Query 038190
Match_columns 531
No_of_seqs 630 out of 3164
Neff 11.6
Searched_HMMs 46136
Date Fri Mar 29 08:30:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038190.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/038190hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03218 maturation of RBCL 1; 100.0 3.3E-63 7.1E-68 506.0 58.2 440 65-525 383-879 (1060)
2 PLN03218 maturation of RBCL 1; 100.0 8.6E-62 1.9E-66 495.6 56.1 442 65-529 419-916 (1060)
3 PLN03081 pentatricopeptide (PP 100.0 3E-60 6.4E-65 482.5 46.3 435 65-526 100-561 (697)
4 PLN03077 Protein ECB2; Provisi 100.0 2.1E-59 4.5E-64 487.7 44.9 426 64-520 133-652 (857)
5 PLN03077 Protein ECB2; Provisi 100.0 2.3E-58 5.1E-63 479.8 47.9 439 64-524 164-688 (857)
6 PLN03081 pentatricopeptide (PP 100.0 2.2E-56 4.9E-61 454.1 45.7 410 83-524 83-525 (697)
7 TIGR02917 PEP_TPR_lipo putativ 100.0 2.3E-27 5E-32 253.4 53.9 427 65-520 444-898 (899)
8 TIGR02917 PEP_TPR_lipo putativ 100.0 7.7E-26 1.7E-30 241.7 53.8 438 65-525 376-869 (899)
9 PRK11447 cellulose synthase su 99.9 1.3E-19 2.7E-24 194.4 51.3 428 65-520 160-738 (1157)
10 PRK11447 cellulose synthase su 99.9 6.8E-19 1.5E-23 188.8 51.5 429 65-523 125-701 (1157)
11 PRK11788 tetratricopeptide rep 99.9 6.2E-21 1.4E-25 182.6 32.0 299 65-383 48-352 (389)
12 PRK11788 tetratricopeptide rep 99.9 1.3E-20 2.7E-25 180.5 33.8 303 94-442 42-354 (389)
13 PRK15174 Vi polysaccharide exp 99.9 8.4E-19 1.8E-23 175.9 43.6 323 65-435 55-381 (656)
14 PRK15174 Vi polysaccharide exp 99.9 3.1E-18 6.6E-23 171.9 46.2 370 67-485 20-401 (656)
15 TIGR00990 3a0801s09 mitochondr 99.9 5.2E-18 1.1E-22 170.9 48.1 390 64-522 139-571 (615)
16 KOG4626 O-linked N-acetylgluco 99.9 6.1E-20 1.3E-24 167.9 30.3 347 67-466 131-481 (966)
17 KOG4626 O-linked N-acetylgluco 99.9 1.3E-19 2.8E-24 165.7 31.9 330 89-469 118-450 (966)
18 PRK10049 pgaA outer membrane p 99.9 5.9E-18 1.3E-22 173.6 46.2 413 66-527 29-461 (765)
19 PRK14574 hmsH outer membrane p 99.9 9.1E-17 2E-21 161.6 46.1 419 64-525 46-516 (822)
20 PRK09782 bacteriophage N4 rece 99.8 5.4E-16 1.2E-20 159.4 47.3 421 65-525 57-709 (987)
21 TIGR00990 3a0801s09 mitochondr 99.8 1.7E-15 3.6E-20 152.9 44.3 382 89-524 129-539 (615)
22 PRK10049 pgaA outer membrane p 99.8 7.9E-16 1.7E-20 158.0 39.2 361 65-470 62-456 (765)
23 KOG2002 TPR-containing nuclear 99.8 1.2E-15 2.5E-20 147.4 37.2 429 67-524 251-747 (1018)
24 KOG4422 Uncharacterized conser 99.8 5.9E-15 1.3E-19 129.8 38.3 316 45-380 114-464 (625)
25 PRK09782 bacteriophage N4 rece 99.8 2.3E-14 4.9E-19 147.6 47.6 430 67-522 162-740 (987)
26 KOG4422 Uncharacterized conser 99.8 6.9E-14 1.5E-18 123.2 37.6 393 87-519 116-548 (625)
27 KOG2076 RNA polymerase III tra 99.8 1.6E-13 3.4E-18 132.0 42.8 365 66-464 153-549 (895)
28 PRK14574 hmsH outer membrane p 99.7 2.4E-13 5.3E-18 137.2 44.2 392 89-525 37-482 (822)
29 KOG2002 TPR-containing nuclear 99.7 2.4E-12 5.3E-17 124.9 41.7 439 65-521 177-708 (1018)
30 KOG1915 Cell cycle control pro 99.7 5.9E-12 1.3E-16 112.7 40.0 414 88-528 74-542 (677)
31 KOG2003 TPR repeat-containing 99.7 2.3E-12 5E-17 114.6 33.4 401 67-508 216-709 (840)
32 PRK10747 putative protoheme IX 99.6 1.4E-12 3E-17 123.7 33.3 282 99-433 96-388 (398)
33 KOG0495 HAT repeat protein [RN 99.6 1.1E-10 2.5E-15 108.7 44.1 425 67-522 391-880 (913)
34 TIGR00540 hemY_coli hemY prote 99.6 2.2E-12 4.8E-17 123.1 33.4 302 90-434 85-398 (409)
35 KOG0547 Translocase of outer m 99.6 5.7E-12 1.2E-16 113.2 33.3 400 64-520 127-564 (606)
36 KOG1915 Cell cycle control pro 99.6 3.1E-10 6.7E-15 101.9 41.5 445 64-522 85-625 (677)
37 PF13429 TPR_15: Tetratricopep 99.6 1.2E-14 2.5E-19 131.8 14.2 193 281-518 80-273 (280)
38 PF13429 TPR_15: Tetratricopep 99.6 5.3E-15 1.1E-19 134.1 11.9 262 92-377 13-276 (280)
39 KOG2076 RNA polymerase III tra 99.6 4E-11 8.6E-16 115.9 37.6 369 97-518 149-551 (895)
40 PRK10747 putative protoheme IX 99.6 8.9E-12 1.9E-16 118.3 33.5 285 65-377 97-389 (398)
41 KOG1155 Anaphase-promoting com 99.6 3.3E-11 7.1E-16 107.7 33.8 400 67-523 141-554 (559)
42 TIGR00540 hemY_coli hemY prote 99.6 1.1E-11 2.4E-16 118.4 32.8 289 64-377 96-398 (409)
43 KOG1155 Anaphase-promoting com 99.6 3.2E-10 6.9E-15 101.6 39.1 354 117-522 159-536 (559)
44 KOG0495 HAT repeat protein [RN 99.6 1.2E-09 2.7E-14 102.0 43.4 420 67-516 361-810 (913)
45 COG2956 Predicted N-acetylgluc 99.6 4.8E-11 1.1E-15 101.8 30.2 293 136-469 49-346 (389)
46 COG2956 Predicted N-acetylgluc 99.6 3.9E-11 8.4E-16 102.4 29.4 298 169-526 47-351 (389)
47 COG3071 HemY Uncharacterized e 99.5 8E-11 1.7E-15 103.7 31.6 292 99-467 96-387 (400)
48 KOG1126 DNA-binding cell divis 99.5 5.6E-12 1.2E-16 117.8 24.3 282 67-379 334-621 (638)
49 KOG2003 TPR repeat-containing 99.5 2.2E-11 4.8E-16 108.4 26.5 408 93-522 207-689 (840)
50 KOG4318 Bicoid mRNA stability 99.5 3.9E-11 8.4E-16 115.5 29.8 228 73-328 11-285 (1088)
51 COG3071 HemY Uncharacterized e 99.5 2.1E-10 4.5E-15 101.1 31.0 270 170-486 97-389 (400)
52 KOG1126 DNA-binding cell divis 99.5 8.7E-12 1.9E-16 116.6 22.7 279 137-467 334-617 (638)
53 KOG1840 Kinesin light chain [C 99.5 3.9E-11 8.4E-16 113.3 26.5 264 196-520 199-477 (508)
54 KOG2047 mRNA splicing factor [ 99.5 9.3E-09 2E-13 96.1 39.6 374 89-470 104-615 (835)
55 PRK12370 invasion protein regu 99.4 8.9E-11 1.9E-15 116.5 26.6 248 104-379 278-536 (553)
56 KOG4318 Bicoid mRNA stability 99.4 8.3E-11 1.8E-15 113.3 25.0 343 108-522 11-370 (1088)
57 KOG2376 Signal recognition par 99.4 2.6E-08 5.7E-13 92.4 36.1 420 53-523 15-521 (652)
58 KOG1840 Kinesin light chain [C 99.4 7.6E-10 1.6E-14 104.7 26.9 255 157-434 199-478 (508)
59 TIGR02521 type_IV_pilW type IV 99.4 7.7E-10 1.7E-14 97.8 26.0 203 277-521 29-231 (234)
60 PRK12370 invasion protein regu 99.4 1.2E-09 2.7E-14 108.4 28.9 234 119-377 253-501 (553)
61 KOG1156 N-terminal acetyltrans 99.4 4.4E-08 9.6E-13 91.9 36.4 418 66-523 21-469 (700)
62 TIGR02521 type_IV_pilW type IV 99.3 1.3E-09 2.7E-14 96.5 24.0 202 86-307 30-231 (234)
63 PF13041 PPR_2: PPR repeat fam 99.3 5.4E-12 1.2E-16 79.9 6.1 50 194-243 1-50 (50)
64 PF12569 NARP1: NMDA receptor- 99.3 8.4E-08 1.8E-12 92.2 37.3 304 94-434 11-333 (517)
65 PF13041 PPR_2: PPR repeat fam 99.3 7E-12 1.5E-16 79.4 6.2 50 85-134 1-50 (50)
66 KOG1129 TPR repeat-containing 99.3 5.7E-10 1.2E-14 95.5 19.3 217 280-525 224-461 (478)
67 KOG1129 TPR repeat-containing 99.3 2.9E-10 6.3E-15 97.3 16.3 232 91-343 227-458 (478)
68 KOG1173 Anaphase-promoting com 99.3 6.6E-08 1.4E-12 89.3 31.8 408 67-521 31-517 (611)
69 PF12569 NARP1: NMDA receptor- 99.3 8.1E-08 1.7E-12 92.4 33.9 287 65-377 17-333 (517)
70 KOG1174 Anaphase-promoting com 99.3 6.5E-07 1.4E-11 79.7 36.3 309 161-493 198-523 (564)
71 KOG2047 mRNA splicing factor [ 99.3 8.5E-07 1.8E-11 83.4 38.6 171 157-343 102-277 (835)
72 KOG3785 Uncharacterized conser 99.2 8.1E-08 1.8E-12 83.5 29.7 359 67-466 37-453 (557)
73 KOG1156 N-terminal acetyltrans 99.2 5.8E-07 1.3E-11 84.6 36.9 377 64-470 53-468 (700)
74 KOG0547 Translocase of outer m 99.2 5.1E-08 1.1E-12 88.4 27.0 341 90-519 118-488 (606)
75 KOG1173 Anaphase-promoting com 99.2 3.2E-08 7E-13 91.3 26.1 276 65-359 257-532 (611)
76 PRK11189 lipoprotein NlpI; Pro 99.2 3.2E-08 6.9E-13 90.0 25.0 224 66-309 40-266 (296)
77 KOG2376 Signal recognition par 99.1 6.2E-07 1.3E-11 83.5 31.6 220 94-346 19-256 (652)
78 cd05804 StaR_like StaR_like; a 99.1 1.7E-06 3.7E-11 81.9 36.2 308 123-470 7-336 (355)
79 COG3063 PilF Tfp pilus assembl 99.1 8.6E-08 1.9E-12 78.6 22.9 199 89-307 37-235 (250)
80 KOG3785 Uncharacterized conser 99.1 1.2E-06 2.5E-11 76.5 30.5 185 94-308 29-214 (557)
81 KOG0548 Molecular co-chaperone 99.1 5.6E-07 1.2E-11 83.0 30.1 358 64-468 14-453 (539)
82 KOG4340 Uncharacterized conser 99.1 8.7E-07 1.9E-11 75.5 28.6 379 87-521 10-442 (459)
83 PRK11189 lipoprotein NlpI; Pro 99.1 2.9E-07 6.3E-12 83.7 27.2 221 99-345 38-267 (296)
84 KOG3617 WD40 and TPR repeat-co 99.1 9.7E-07 2.1E-11 85.3 30.7 178 64-263 740-944 (1416)
85 PRK04841 transcriptional regul 99.1 7E-07 1.5E-11 95.7 33.6 349 97-470 384-760 (903)
86 PRK04841 transcriptional regul 99.0 2.8E-06 6.1E-11 91.1 37.3 349 132-519 384-757 (903)
87 KOG0548 Molecular co-chaperone 99.0 6.1E-06 1.3E-10 76.4 33.5 388 95-504 10-471 (539)
88 COG3063 PilF Tfp pilus assembl 99.0 3.7E-07 8.1E-12 74.9 23.0 206 124-352 37-243 (250)
89 KOG4162 Predicted calmodulin-b 99.0 3.2E-05 6.9E-10 74.8 39.8 389 117-520 318-781 (799)
90 KOG0624 dsRNA-activated protei 99.0 5.9E-06 1.3E-10 72.0 30.5 202 86-308 37-252 (504)
91 KOG4162 Predicted calmodulin-b 99.0 3.8E-06 8.2E-11 81.0 32.0 265 173-468 460-781 (799)
92 cd05804 StaR_like StaR_like; a 99.0 3E-06 6.5E-11 80.2 31.7 312 88-434 7-335 (355)
93 KOG1174 Anaphase-promoting com 99.0 3.5E-06 7.5E-11 75.2 28.1 266 86-378 231-500 (564)
94 PF04733 Coatomer_E: Coatomer 98.9 1.3E-07 2.7E-12 84.7 16.3 249 164-467 8-262 (290)
95 KOG1914 mRNA cleavage and poly 98.9 7.7E-05 1.7E-09 69.3 37.0 141 77-225 11-166 (656)
96 PF04733 Coatomer_E: Coatomer 98.9 2E-07 4.3E-12 83.5 17.3 82 294-377 182-264 (290)
97 PLN02789 farnesyltranstransfer 98.9 4.7E-06 1E-10 75.7 26.2 212 99-326 49-267 (320)
98 KOG0985 Vesicle coat protein c 98.8 2.2E-05 4.8E-10 78.0 31.4 108 406-522 1220-1341(1666)
99 KOG4340 Uncharacterized conser 98.8 9.5E-06 2.1E-10 69.3 24.9 284 67-374 25-335 (459)
100 KOG1125 TPR repeat-containing 98.8 6.1E-07 1.3E-11 83.5 18.9 221 65-298 298-561 (579)
101 KOG0985 Vesicle coat protein c 98.8 3.5E-05 7.6E-10 76.6 31.6 80 67-146 658-748 (1666)
102 KOG3617 WD40 and TPR repeat-co 98.8 7.4E-06 1.6E-10 79.4 26.0 362 86-518 725-1105(1416)
103 KOG1125 TPR repeat-containing 98.8 1.4E-06 3E-11 81.2 20.2 258 165-461 293-562 (579)
104 KOG1127 TPR repeat-containing 98.8 9.7E-05 2.1E-09 73.6 33.6 382 67-467 473-949 (1238)
105 KOG0624 dsRNA-activated protei 98.8 0.00012 2.5E-09 64.2 30.3 341 66-440 52-425 (504)
106 PF12854 PPR_1: PPR repeat 98.7 2.4E-08 5.1E-13 56.5 4.0 32 436-467 2-33 (34)
107 PF12854 PPR_1: PPR repeat 98.7 2.8E-08 6.1E-13 56.2 4.2 33 401-433 2-34 (34)
108 TIGR03302 OM_YfiO outer membra 98.7 8.5E-06 1.8E-10 71.9 22.2 187 277-469 31-231 (235)
109 KOG1127 TPR repeat-containing 98.7 7.1E-05 1.5E-09 74.6 29.2 390 101-522 472-952 (1238)
110 KOG1070 rRNA processing protei 98.7 2.2E-05 4.8E-10 80.6 26.3 227 195-460 1457-1690(1710)
111 PLN02789 farnesyltranstransfer 98.6 2.4E-05 5.2E-10 71.2 23.6 207 66-291 51-267 (320)
112 KOG3081 Vesicle coat complex C 98.6 4.9E-05 1.1E-09 64.2 23.0 45 421-466 188-232 (299)
113 KOG1128 Uncharacterized conser 98.6 4.6E-06 9.9E-11 80.0 18.5 217 158-434 399-615 (777)
114 KOG1070 rRNA processing protei 98.6 4.6E-05 9.9E-10 78.5 26.1 230 122-371 1458-1693(1710)
115 PRK14720 transcript cleavage f 98.6 5E-05 1.1E-09 77.2 26.4 268 156-485 30-304 (906)
116 COG5010 TadD Flp pilus assembl 98.6 3.5E-06 7.5E-11 70.9 15.1 149 67-223 81-229 (257)
117 COG4783 Putative Zn-dependent 98.6 0.00039 8.5E-09 64.2 28.9 185 275-487 270-454 (484)
118 PRK10370 formate-dependent nit 98.6 5.3E-06 1.1E-10 70.1 16.1 119 100-225 52-173 (198)
119 TIGR03302 OM_YfiO outer membra 98.6 1.2E-05 2.5E-10 71.1 19.0 157 65-225 46-232 (235)
120 KOG3081 Vesicle coat complex C 98.5 0.00033 7.1E-09 59.4 25.3 250 94-377 15-270 (299)
121 PRK14720 transcript cleavage f 98.5 7.2E-05 1.6E-09 76.1 25.3 254 86-398 30-304 (906)
122 KOG3616 Selective LIM binding 98.5 0.00039 8.4E-09 67.2 28.1 100 409-520 1082-1182(1636)
123 PRK15359 type III secretion sy 98.5 8.5E-06 1.8E-10 65.1 15.0 109 72-186 13-121 (144)
124 KOG3616 Selective LIM binding 98.5 0.00019 4.1E-09 69.3 25.8 192 129-371 739-930 (1636)
125 PRK15179 Vi polysaccharide bio 98.5 0.00012 2.5E-09 73.9 25.3 132 277-434 84-216 (694)
126 PRK10370 formate-dependent nit 98.5 1E-05 2.2E-10 68.5 15.0 119 65-186 52-173 (198)
127 COG4783 Putative Zn-dependent 98.4 0.00038 8.3E-09 64.2 25.6 122 286-433 313-435 (484)
128 COG5010 TadD Flp pilus assembl 98.4 5.6E-05 1.2E-09 63.9 18.7 158 126-304 70-227 (257)
129 KOG1128 Uncharacterized conser 98.4 1.6E-05 3.4E-10 76.4 17.3 212 93-342 404-615 (777)
130 KOG1914 mRNA cleavage and poly 98.4 0.0017 3.6E-08 60.8 33.3 367 67-470 34-501 (656)
131 PRK15359 type III secretion sy 98.4 6.3E-05 1.4E-09 60.1 16.7 108 300-435 14-121 (144)
132 KOG2053 Mitochondrial inherita 98.3 0.0043 9.2E-08 61.8 41.8 415 67-529 24-509 (932)
133 PRK15179 Vi polysaccharide bio 98.3 0.0001 2.2E-09 74.3 19.9 133 86-225 85-217 (694)
134 TIGR02552 LcrH_SycD type III s 98.3 4.1E-05 8.9E-10 60.8 13.8 110 74-186 5-114 (135)
135 PF09295 ChAPs: ChAPs (Chs5p-A 98.2 0.00013 2.9E-09 67.8 17.8 128 352-525 172-300 (395)
136 PF09295 ChAPs: ChAPs (Chs5p-A 98.2 0.00024 5.3E-09 66.1 18.6 126 280-433 170-295 (395)
137 PF13812 PPR_3: Pentatricopept 98.1 4.1E-06 8.8E-11 47.9 3.6 33 407-439 2-34 (34)
138 TIGR00756 PPR pentatricopeptid 98.1 5.4E-06 1.2E-10 47.7 4.2 33 89-121 2-34 (35)
139 TIGR00756 PPR pentatricopeptid 98.1 5.3E-06 1.2E-10 47.8 4.0 34 408-441 2-35 (35)
140 TIGR02552 LcrH_SycD type III s 98.1 0.00014 3.1E-09 57.7 13.6 117 109-234 5-121 (135)
141 PF13812 PPR_3: Pentatricopept 98.1 6.1E-06 1.3E-10 47.1 4.1 33 88-120 2-34 (34)
142 PF09976 TPR_21: Tetratricopep 98.1 0.0003 6.6E-09 56.4 15.3 118 327-466 24-143 (145)
143 PF07079 DUF1347: Protein of u 98.1 0.0093 2E-07 54.9 35.7 141 64-208 18-179 (549)
144 KOG2053 Mitochondrial inherita 98.0 0.018 4E-07 57.6 39.3 193 62-268 53-256 (932)
145 PF10037 MRP-S27: Mitochondria 98.0 0.00075 1.6E-08 63.2 18.9 108 276-383 63-172 (429)
146 KOG3060 Uncharacterized conser 98.0 0.0054 1.2E-07 51.9 21.5 76 170-251 99-174 (289)
147 PF09976 TPR_21: Tetratricopep 98.0 0.00029 6.4E-09 56.5 14.1 126 89-222 14-144 (145)
148 KOG3060 Uncharacterized conser 98.0 0.0065 1.4E-07 51.4 22.1 199 57-268 17-221 (289)
149 PF06239 ECSIT: Evolutionarily 97.9 0.0002 4.4E-09 59.0 10.8 35 138-172 119-153 (228)
150 PF08579 RPM2: Mitochondrial r 97.9 0.00029 6.4E-09 51.2 9.9 80 282-361 28-116 (120)
151 PF10037 MRP-S27: Mitochondria 97.8 0.00048 1E-08 64.5 13.0 101 86-186 65-167 (429)
152 KOG2041 WD40 repeat protein [G 97.8 0.011 2.4E-07 57.3 21.6 102 124-252 798-899 (1189)
153 PF14938 SNAP: Soluble NSF att 97.8 0.004 8.6E-08 56.4 18.5 136 281-434 116-265 (282)
154 PF01535 PPR: PPR repeat; Int 97.8 3.4E-05 7.4E-10 42.8 3.2 29 198-226 2-30 (31)
155 TIGR02795 tol_pal_ybgF tol-pal 97.7 0.0011 2.5E-08 51.0 12.8 97 90-186 5-105 (119)
156 PF01535 PPR: PPR repeat; Int 97.7 4.9E-05 1.1E-09 42.2 3.7 30 89-118 2-31 (31)
157 PRK10866 outer membrane biogen 97.7 0.023 4.9E-07 49.9 22.1 178 282-466 35-237 (243)
158 PF14938 SNAP: Soluble NSF att 97.7 0.0016 3.5E-08 58.9 15.4 155 199-376 97-264 (282)
159 PF12895 Apc3: Anaphase-promot 97.7 4.7E-05 1E-09 54.4 4.4 80 66-147 3-83 (84)
160 cd00189 TPR Tetratricopeptide 97.7 0.00053 1.2E-08 50.2 10.3 94 90-185 3-96 (100)
161 PF08579 RPM2: Mitochondrial r 97.7 0.0013 2.8E-08 48.0 11.2 89 408-505 27-116 (120)
162 TIGR02795 tol_pal_ybgF tol-pal 97.7 0.0017 3.6E-08 50.1 12.9 102 123-226 3-106 (119)
163 CHL00033 ycf3 photosystem I as 97.7 0.0017 3.6E-08 53.7 13.3 109 157-268 35-150 (168)
164 PLN03088 SGT1, suppressor of 97.6 0.00082 1.8E-08 62.9 12.4 86 65-152 15-100 (356)
165 CHL00033 ycf3 photosystem I as 97.6 0.0028 6E-08 52.4 14.4 107 349-486 35-148 (168)
166 KOG0550 Molecular chaperone (D 97.6 0.032 7E-07 50.8 21.2 275 132-470 59-350 (486)
167 PF05843 Suf: Suppressor of fo 97.6 0.0023 4.9E-08 57.7 14.6 130 316-470 3-136 (280)
168 PRK15363 pathogenicity island 97.6 0.00075 1.6E-08 53.2 9.6 99 87-187 35-133 (157)
169 PF04840 Vps16_C: Vps16, C-ter 97.6 0.061 1.3E-06 49.2 27.2 109 316-466 179-287 (319)
170 PRK02603 photosystem I assembl 97.6 0.003 6.6E-08 52.4 13.6 91 87-178 35-127 (172)
171 KOG1130 Predicted G-alpha GTPa 97.6 0.0047 1E-07 55.9 15.0 138 316-470 197-344 (639)
172 PRK15363 pathogenicity island 97.6 0.0019 4.2E-08 50.9 11.2 96 124-225 37-132 (157)
173 PLN03088 SGT1, suppressor of 97.5 0.0027 5.8E-08 59.4 14.4 91 94-186 9-99 (356)
174 PRK10866 outer membrane biogen 97.5 0.044 9.5E-07 48.1 21.0 61 93-154 38-101 (243)
175 PF06239 ECSIT: Evolutionarily 97.5 0.0026 5.7E-08 52.7 12.0 88 277-364 45-153 (228)
176 KOG1130 Predicted G-alpha GTPa 97.5 0.0014 3E-08 59.2 11.2 160 234-401 198-369 (639)
177 COG4700 Uncharacterized protei 97.5 0.033 7.3E-07 44.8 17.9 162 95-266 64-225 (251)
178 PRK02603 photosystem I assembl 97.5 0.0038 8.3E-08 51.8 13.5 116 122-246 35-166 (172)
179 PF05843 Suf: Suppressor of fo 97.5 0.0015 3.3E-08 58.8 11.7 133 88-225 2-136 (280)
180 PF12895 Apc3: Anaphase-promot 97.5 0.00023 4.9E-09 50.9 5.2 60 405-466 24-83 (84)
181 cd00189 TPR Tetratricopeptide 97.5 0.0023 4.9E-08 46.7 11.1 94 282-377 3-96 (100)
182 KOG2280 Vacuolar assembly/sort 97.5 0.11 2.4E-06 51.2 24.0 84 350-465 685-768 (829)
183 PF12688 TPR_5: Tetratrico pep 97.5 0.0081 1.8E-07 45.7 13.4 55 131-185 10-66 (120)
184 COG5107 RNA14 Pre-mRNA 3'-end 97.4 0.095 2.1E-06 48.5 36.2 92 73-169 30-121 (660)
185 PF13525 YfiO: Outer membrane 97.4 0.047 1E-06 46.6 19.4 178 163-369 11-198 (203)
186 KOG0553 TPR repeat-containing 97.4 0.0032 7E-08 54.7 11.6 87 289-377 91-177 (304)
187 PRK10153 DNA-binding transcrip 97.4 0.016 3.5E-07 56.8 17.8 143 309-469 332-481 (517)
188 KOG0553 TPR repeat-containing 97.4 0.0032 6.9E-08 54.7 11.2 86 98-185 92-177 (304)
189 COG4235 Cytochrome c biogenesi 97.4 0.013 2.7E-07 51.4 14.9 101 119-225 153-256 (287)
190 PF07079 DUF1347: Protein of u 97.3 0.13 2.8E-06 47.7 36.9 376 67-466 60-520 (549)
191 KOG0550 Molecular chaperone (D 97.3 0.12 2.6E-06 47.3 24.1 265 65-379 62-351 (486)
192 PRK10153 DNA-binding transcrip 97.3 0.017 3.6E-07 56.8 17.3 143 83-234 333-489 (517)
193 KOG2041 WD40 repeat protein [G 97.3 0.19 4E-06 49.3 26.2 215 68-339 679-903 (1189)
194 PF04840 Vps16_C: Vps16, C-ter 97.3 0.13 2.7E-06 47.1 26.6 63 89-165 2-64 (319)
195 PF13525 YfiO: Outer membrane 97.3 0.054 1.2E-06 46.2 18.1 170 283-460 9-197 (203)
196 PF12688 TPR_5: Tetratrico pep 97.3 0.019 4.2E-07 43.6 13.4 107 93-207 7-117 (120)
197 COG4700 Uncharacterized protei 97.2 0.075 1.6E-06 42.9 18.6 134 310-466 85-218 (251)
198 PF14559 TPR_19: Tetratricopep 97.2 0.001 2.2E-08 45.2 5.6 51 65-116 4-54 (68)
199 KOG1538 Uncharacterized conser 97.2 0.094 2E-06 50.8 19.9 67 411-485 778-844 (1081)
200 PF03704 BTAD: Bacterial trans 97.2 0.067 1.4E-06 42.9 16.7 79 407-499 63-142 (146)
201 COG3898 Uncharacterized membra 97.1 0.19 4.2E-06 45.7 24.5 288 63-383 95-397 (531)
202 PF13432 TPR_16: Tetratricopep 97.1 0.0033 7.2E-08 42.1 7.2 57 412-469 3-59 (65)
203 PF13414 TPR_11: TPR repeat; P 97.1 0.0033 7.2E-08 42.7 7.2 64 405-469 2-66 (69)
204 COG3898 Uncharacterized membra 97.1 0.23 5E-06 45.2 28.0 300 67-404 68-396 (531)
205 PF13414 TPR_11: TPR repeat; P 97.1 0.0017 3.8E-08 44.1 5.5 63 87-150 3-66 (69)
206 PF14559 TPR_19: Tetratricopep 97.0 0.0017 3.6E-08 44.1 5.2 51 135-186 4-54 (68)
207 KOG1538 Uncharacterized conser 97.0 0.14 3E-06 49.6 18.9 141 355-525 709-849 (1081)
208 COG4235 Cytochrome c biogenesi 97.0 0.051 1.1E-06 47.7 14.8 117 67-186 137-256 (287)
209 PF13432 TPR_16: Tetratricopep 96.9 0.0029 6.3E-08 42.4 5.8 52 97-149 7-58 (65)
210 PRK10803 tol-pal system protei 96.9 0.018 4E-07 50.9 12.1 100 124-225 145-246 (263)
211 PRK10803 tol-pal system protei 96.8 0.022 4.7E-07 50.5 11.7 103 407-526 144-250 (263)
212 KOG2796 Uncharacterized conser 96.8 0.28 6.1E-06 42.1 20.2 144 280-448 178-326 (366)
213 PF13424 TPR_12: Tetratricopep 96.7 0.0085 1.8E-07 41.9 7.1 63 406-468 5-73 (78)
214 PF13281 DUF4071: Domain of un 96.7 0.5 1.1E-05 43.8 24.5 175 281-470 143-334 (374)
215 PRK15331 chaperone protein Sic 96.6 0.2 4.4E-06 40.0 14.5 64 405-469 70-133 (165)
216 PF12921 ATP13: Mitochondrial 96.6 0.055 1.2E-06 41.6 10.9 98 349-453 2-100 (126)
217 KOG2114 Vacuolar assembly/sort 96.5 1.1 2.4E-05 45.3 23.7 178 89-306 336-517 (933)
218 PF03704 BTAD: Bacterial trans 96.5 0.016 3.5E-07 46.5 8.2 73 158-235 63-140 (146)
219 PF13424 TPR_12: Tetratricopep 96.5 0.0066 1.4E-07 42.5 5.1 68 232-307 6-74 (78)
220 PF13371 TPR_9: Tetratricopept 96.5 0.012 2.7E-07 40.4 6.3 55 131-186 4-58 (73)
221 KOG2796 Uncharacterized conser 96.5 0.5 1.1E-05 40.7 16.9 141 197-346 178-318 (366)
222 PF13371 TPR_9: Tetratricopept 96.4 0.018 3.9E-07 39.6 7.0 57 95-152 3-59 (73)
223 PRK15331 chaperone protein Sic 96.4 0.025 5.5E-07 45.0 8.2 92 93-186 43-134 (165)
224 PF12921 ATP13: Mitochondrial 96.4 0.074 1.6E-06 40.9 10.6 89 158-246 3-103 (126)
225 PF13170 DUF4003: Protein of u 96.3 0.8 1.7E-05 41.5 21.9 142 212-359 78-227 (297)
226 COG3118 Thioredoxin domain-con 96.3 0.41 8.8E-06 42.1 15.6 143 96-246 143-287 (304)
227 KOG2280 Vacuolar assembly/sort 96.2 1.6 3.5E-05 43.6 23.1 317 53-433 443-797 (829)
228 KOG2610 Uncharacterized conser 96.2 0.12 2.5E-06 46.0 11.7 151 99-256 115-272 (491)
229 PLN03098 LPA1 LOW PSII ACCUMUL 96.1 0.071 1.5E-06 50.0 10.8 63 405-469 74-140 (453)
230 PF10300 DUF3808: Protein of u 96.1 0.53 1.1E-05 46.0 17.3 168 281-470 190-376 (468)
231 KOG0543 FKBP-type peptidyl-pro 96.1 0.12 2.6E-06 47.3 11.8 97 279-377 257-354 (397)
232 smart00299 CLH Clathrin heavy 96.0 0.59 1.3E-05 37.0 14.4 126 90-242 10-136 (140)
233 KOG1941 Acetylcholine receptor 95.9 1.2 2.7E-05 40.3 19.7 213 124-341 45-273 (518)
234 PF13512 TPR_18: Tetratricopep 95.8 0.57 1.2E-05 36.6 12.8 111 284-399 15-127 (142)
235 PF08631 SPO22: Meiosis protei 95.7 1.5 3.2E-05 39.7 24.2 174 207-383 4-191 (278)
236 KOG3941 Intermediate in Toll s 95.7 0.2 4.3E-06 43.5 11.0 102 405-508 66-173 (406)
237 smart00299 CLH Clathrin heavy 95.7 0.77 1.7E-05 36.4 14.4 127 281-452 9-136 (140)
238 KOG3941 Intermediate in Toll s 95.7 0.13 2.8E-06 44.6 9.8 34 139-172 140-173 (406)
239 KOG4555 TPR repeat-containing 95.6 0.28 6E-06 37.1 10.1 87 65-152 56-145 (175)
240 COG3118 Thioredoxin domain-con 95.6 1.5 3.3E-05 38.7 16.8 145 64-214 146-290 (304)
241 PLN03098 LPA1 LOW PSII ACCUMUL 95.5 0.21 4.6E-06 46.9 11.3 64 86-151 74-141 (453)
242 PF13281 DUF4071: Domain of un 95.5 2.1 4.6E-05 39.8 21.0 100 122-225 141-255 (374)
243 PRK11906 transcriptional regul 95.5 0.94 2E-05 42.9 15.4 149 66-221 272-432 (458)
244 PF13170 DUF4003: Protein of u 95.5 0.84 1.8E-05 41.3 14.8 132 103-239 78-225 (297)
245 COG4105 ComL DNA uptake lipopr 95.5 1.5 3.3E-05 37.9 19.0 72 96-168 43-117 (254)
246 COG4105 ComL DNA uptake lipopr 95.4 1.6 3.5E-05 37.8 21.4 190 158-376 36-231 (254)
247 PF04053 Coatomer_WDAD: Coatom 95.3 0.24 5.1E-06 47.7 11.5 152 99-303 273-426 (443)
248 KOG1941 Acetylcholine receptor 95.3 2.2 4.8E-05 38.8 17.5 174 280-470 84-275 (518)
249 KOG1585 Protein required for f 95.2 1.7 3.7E-05 37.2 16.3 212 90-337 34-250 (308)
250 COG1729 Uncharacterized protei 95.2 0.45 9.7E-06 41.4 11.5 99 351-470 144-244 (262)
251 KOG0543 FKBP-type peptidyl-pro 95.1 0.4 8.6E-06 44.1 11.3 124 95-224 216-354 (397)
252 PF13512 TPR_18: Tetratricopep 95.0 0.78 1.7E-05 35.8 11.3 78 94-172 17-97 (142)
253 PRK11906 transcriptional regul 94.9 3 6.4E-05 39.7 16.7 151 88-244 252-421 (458)
254 PF09205 DUF1955: Domain of un 94.7 1.4 3.1E-05 33.6 14.0 138 167-346 12-152 (161)
255 COG3629 DnrI DNA-binding trans 94.6 0.6 1.3E-05 41.3 11.0 86 406-504 153-238 (280)
256 KOG2114 Vacuolar assembly/sort 94.6 6.1 0.00013 40.3 25.2 43 387-433 721-763 (933)
257 PF13428 TPR_14: Tetratricopep 94.5 0.16 3.5E-06 30.5 5.3 28 159-186 3-30 (44)
258 PF04053 Coatomer_WDAD: Coatom 94.5 0.52 1.1E-05 45.4 11.3 132 280-466 296-427 (443)
259 KOG4555 TPR repeat-containing 94.4 0.82 1.8E-05 34.7 9.6 91 96-187 52-145 (175)
260 PF04097 Nic96: Nup93/Nic96; 94.0 8 0.00017 39.5 22.2 62 89-152 114-182 (613)
261 COG1729 Uncharacterized protei 93.9 0.91 2E-05 39.6 10.5 99 124-225 144-244 (262)
262 COG4649 Uncharacterized protei 93.9 2.9 6.3E-05 33.8 12.5 129 360-526 69-200 (221)
263 KOG2610 Uncharacterized conser 93.8 3.4 7.3E-05 37.2 13.8 152 169-339 115-272 (491)
264 PF13428 TPR_14: Tetratricopep 93.8 0.18 3.9E-06 30.3 4.5 28 89-116 3-30 (44)
265 PF04184 ST7: ST7 protein; In 93.8 4.2 9E-05 39.0 15.1 77 159-238 261-338 (539)
266 PF08631 SPO22: Meiosis protei 93.6 5.3 0.00012 36.1 24.9 162 64-232 5-193 (278)
267 COG5107 RNA14 Pre-mRNA 3'-end 93.6 6.7 0.00014 37.0 31.1 95 280-377 398-494 (660)
268 PF07035 Mic1: Colon cancer-as 93.4 3.6 7.7E-05 33.4 15.1 134 217-377 15-148 (167)
269 COG3629 DnrI DNA-binding trans 93.3 0.93 2E-05 40.2 9.7 84 123-207 154-238 (280)
270 PF04184 ST7: ST7 protein; In 93.2 8.4 0.00018 37.0 19.2 55 321-375 266-321 (539)
271 PF13431 TPR_17: Tetratricopep 93.1 0.11 2.5E-06 29.1 2.5 32 75-107 2-33 (34)
272 KOG1920 IkappaB kinase complex 93.0 15 0.00032 39.4 22.7 23 496-518 1187-1209(1265)
273 PF10602 RPN7: 26S proteasome 93.0 1.2 2.7E-05 36.8 9.7 64 159-224 38-101 (177)
274 COG1747 Uncharacterized N-term 93.0 8.9 0.00019 36.9 21.2 97 311-434 63-159 (711)
275 PF07035 Mic1: Colon cancer-as 92.8 4.5 9.7E-05 32.9 14.5 136 72-225 14-149 (167)
276 PF13176 TPR_7: Tetratricopept 92.8 0.32 7E-06 27.7 4.3 25 443-467 1-25 (36)
277 PF13176 TPR_7: Tetratricopept 92.7 0.23 5E-06 28.3 3.6 27 408-434 1-27 (36)
278 PF10300 DUF3808: Protein of u 92.5 12 0.00025 36.9 21.8 174 90-267 191-376 (468)
279 PF09205 DUF1955: Domain of un 92.5 3.9 8.4E-05 31.4 14.2 61 407-468 87-147 (161)
280 KOG1464 COP9 signalosome, subu 92.4 6.9 0.00015 34.1 24.4 215 151-375 20-257 (440)
281 COG4649 Uncharacterized protei 92.3 5.1 0.00011 32.4 13.2 134 158-308 60-196 (221)
282 PF09613 HrpB1_HrpK: Bacterial 92.1 5 0.00011 32.2 11.3 104 66-177 24-129 (160)
283 KOG1585 Protein required for f 92.1 7.2 0.00016 33.6 21.0 211 197-464 32-250 (308)
284 KOG1258 mRNA processing protei 92.1 13 0.00028 36.5 31.0 169 313-507 296-489 (577)
285 PF10345 Cohesin_load: Cohesin 92.0 16 0.00035 37.5 36.3 295 53-353 65-451 (608)
286 PF10602 RPN7: 26S proteasome 91.5 2.8 6.1E-05 34.7 10.0 97 88-184 37-140 (177)
287 KOG0128 RNA-binding protein SA 91.0 20 0.00044 36.8 33.7 383 86-485 112-541 (881)
288 PF00515 TPR_1: Tetratricopept 90.8 0.52 1.1E-05 26.2 3.7 28 407-434 2-29 (34)
289 KOG1920 IkappaB kinase complex 90.7 27 0.00059 37.6 25.5 104 288-433 948-1053(1265)
290 PF13431 TPR_17: Tetratricopep 90.5 0.32 7E-06 27.2 2.6 21 195-215 12-32 (34)
291 COG4785 NlpI Lipoprotein NlpI, 90.1 11 0.00023 32.0 14.6 205 67-308 61-266 (297)
292 KOG0276 Vesicle coat complex C 90.1 5.3 0.00011 39.1 11.4 103 289-434 647-749 (794)
293 PF00637 Clathrin: Region in C 90.0 0.33 7.2E-06 38.6 3.3 84 93-183 13-96 (143)
294 KOG1258 mRNA processing protei 89.7 22 0.00048 35.0 32.9 369 67-457 60-491 (577)
295 KOG0276 Vesicle coat complex C 89.6 5.2 0.00011 39.2 11.0 132 281-467 616-747 (794)
296 COG4455 ImpE Protein of avirul 89.6 2.9 6.2E-05 35.2 8.1 61 90-151 4-64 (273)
297 PF02284 COX5A: Cytochrome c o 89.5 2.2 4.7E-05 30.9 6.4 46 425-470 29-74 (108)
298 cd00923 Cyt_c_Oxidase_Va Cytoc 89.5 2.7 5.7E-05 30.1 6.8 47 424-470 25-71 (103)
299 KOG2063 Vacuolar assembly/sort 88.5 36 0.00079 35.9 16.9 39 205-243 600-638 (877)
300 PF07719 TPR_2: Tetratricopept 88.4 1 2.2E-05 24.9 3.7 27 408-434 3-29 (34)
301 PF02259 FAT: FAT domain; Int 88.1 23 0.0005 33.2 19.9 66 277-342 144-212 (352)
302 KOG1586 Protein required for f 87.9 16 0.00036 31.3 15.2 18 507-524 209-226 (288)
303 PF00515 TPR_1: Tetratricopept 87.9 1.8 4E-05 23.9 4.5 28 442-469 2-29 (34)
304 KOG0686 COP9 signalosome, subu 87.8 24 0.00052 33.1 13.7 169 158-343 151-333 (466)
305 KOG1586 Protein required for f 87.8 17 0.00036 31.3 21.5 129 241-377 83-223 (288)
306 COG2909 MalT ATP-dependent tra 87.5 40 0.00086 35.2 27.2 165 289-470 468-647 (894)
307 PF13374 TPR_10: Tetratricopep 87.3 1.8 3.9E-05 25.2 4.6 28 441-468 2-29 (42)
308 COG0457 NrfG FOG: TPR repeat [ 87.3 18 0.00039 31.0 27.0 120 100-224 36-158 (291)
309 PF13374 TPR_10: Tetratricopep 87.2 1 2.2E-05 26.4 3.4 32 233-264 4-35 (42)
310 PRK15180 Vi polysaccharide bio 87.1 29 0.00063 33.2 24.7 118 65-186 302-420 (831)
311 PF10579 Rapsyn_N: Rapsyn N-te 86.9 2 4.4E-05 29.4 4.8 44 473-516 21-66 (80)
312 PF09613 HrpB1_HrpK: Bacterial 86.7 15 0.00032 29.6 12.3 52 133-185 21-72 (160)
313 KOG4570 Uncharacterized conser 86.7 7.6 0.00016 34.8 9.4 102 83-186 60-164 (418)
314 PF02284 COX5A: Cytochrome c o 86.6 10 0.00022 27.6 8.5 61 389-450 28-88 (108)
315 PF07719 TPR_2: Tetratricopept 86.6 2.6 5.6E-05 23.1 4.7 28 442-469 2-29 (34)
316 PF07163 Pex26: Pex26 protein; 86.4 23 0.00049 31.4 14.7 89 284-372 88-181 (309)
317 COG1747 Uncharacterized N-term 86.1 34 0.00075 33.2 23.2 63 388-451 186-249 (711)
318 KOG4570 Uncharacterized conser 85.7 13 0.00028 33.4 10.2 101 276-378 61-164 (418)
319 KOG1464 COP9 signalosome, subu 85.4 25 0.00054 30.9 17.1 188 65-253 40-253 (440)
320 PF11207 DUF2989: Protein of u 85.3 12 0.00025 31.4 9.4 22 404-425 176-197 (203)
321 cd00923 Cyt_c_Oxidase_Va Cytoc 85.3 7.6 0.00016 27.9 7.1 45 105-149 25-69 (103)
322 PF13929 mRNA_stabil: mRNA sta 85.3 17 0.00036 32.5 10.8 145 90-240 134-287 (292)
323 KOG1550 Extracellular protein 85.0 46 0.001 33.7 27.0 147 68-226 228-394 (552)
324 KOG2066 Vacuolar assembly/sort 84.7 51 0.0011 33.9 27.2 102 94-208 363-467 (846)
325 PF11207 DUF2989: Protein of u 84.4 13 0.00028 31.2 9.2 56 404-460 139-197 (203)
326 PF13929 mRNA_stabil: mRNA sta 84.4 30 0.00065 30.9 13.2 137 209-355 141-284 (292)
327 TIGR03504 FimV_Cterm FimV C-te 83.9 4.2 9.1E-05 24.4 4.7 23 412-434 5-27 (44)
328 PF08424 NRDE-2: NRDE-2, neces 83.9 36 0.00079 31.5 15.8 151 74-227 7-185 (321)
329 PF07721 TPR_4: Tetratricopept 83.8 1.3 2.9E-05 22.8 2.3 24 495-518 3-26 (26)
330 TIGR02561 HrpB1_HrpK type III 83.7 20 0.00043 28.4 10.2 50 135-185 23-72 (153)
331 KOG2066 Vacuolar assembly/sort 83.5 57 0.0012 33.5 24.5 96 67-169 371-467 (846)
332 KOG0890 Protein kinase of the 83.3 1E+02 0.0023 36.4 24.3 301 127-470 1388-1731(2382)
333 PF04097 Nic96: Nup93/Nic96; 82.1 65 0.0014 33.1 21.1 58 65-123 124-188 (613)
334 PF13181 TPR_8: Tetratricopept 82.1 4.8 0.0001 22.1 4.5 26 443-468 3-28 (34)
335 PF06552 TOM20_plant: Plant sp 81.9 27 0.00059 28.7 10.1 69 227-309 64-137 (186)
336 PF13174 TPR_6: Tetratricopept 81.8 1.9 4E-05 23.5 2.6 30 496-525 3-32 (33)
337 PF13181 TPR_8: Tetratricopept 81.2 3.9 8.5E-05 22.5 3.9 28 407-434 2-29 (34)
338 COG5159 RPN6 26S proteasome re 81.2 24 0.00051 31.3 9.9 119 412-530 9-162 (421)
339 PF00637 Clathrin: Region in C 81.1 0.54 1.2E-05 37.4 0.3 85 284-375 12-96 (143)
340 COG0457 NrfG FOG: TPR repeat [ 81.1 34 0.00073 29.2 28.1 228 135-378 36-265 (291)
341 TIGR02561 HrpB1_HrpK type III 80.9 26 0.00056 27.8 10.2 51 65-117 23-74 (153)
342 KOG0991 Replication factor C, 80.5 26 0.00057 30.1 9.7 79 162-252 135-213 (333)
343 TIGR03504 FimV_Cterm FimV C-te 80.5 4.5 9.7E-05 24.3 3.9 23 320-342 5-27 (44)
344 COG4785 NlpI Lipoprotein NlpI, 79.4 38 0.00083 28.8 14.3 87 64-152 77-163 (297)
345 COG2976 Uncharacterized protei 79.0 37 0.0008 28.4 13.1 58 411-470 131-188 (207)
346 PF13174 TPR_6: Tetratricopept 79.0 5 0.00011 21.7 3.8 24 446-469 5-28 (33)
347 PF06552 TOM20_plant: Plant sp 77.1 22 0.00047 29.3 8.0 88 241-344 38-137 (186)
348 PF07575 Nucleopor_Nup85: Nup8 77.0 90 0.002 31.8 16.3 25 87-112 149-173 (566)
349 PF09986 DUF2225: Uncharacteri 76.8 44 0.00096 28.7 10.5 102 416-527 87-199 (214)
350 PF08424 NRDE-2: NRDE-2, neces 76.7 64 0.0014 29.9 17.5 26 284-309 159-184 (321)
351 PF02259 FAT: FAT domain; Int 76.4 68 0.0015 30.0 23.5 31 348-378 145-175 (352)
352 PF10579 Rapsyn_N: Rapsyn N-te 76.4 11 0.00024 26.0 5.2 47 418-464 18-66 (80)
353 COG2909 MalT ATP-dependent tra 75.7 1.1E+02 0.0024 32.2 28.1 234 133-374 426-684 (894)
354 PF13762 MNE1: Mitochondrial s 75.3 39 0.00085 26.8 9.4 86 159-244 41-128 (145)
355 PF14689 SPOB_a: Sensor_kinase 75.0 3.8 8.3E-05 26.8 2.9 40 491-530 21-60 (62)
356 KOG4077 Cytochrome c oxidase, 74.8 22 0.00047 27.1 6.9 35 400-434 78-112 (149)
357 KOG4234 TPR repeat-containing 74.7 41 0.00089 28.2 9.0 92 95-187 103-198 (271)
358 KOG4648 Uncharacterized conser 74.5 17 0.00036 33.1 7.4 86 64-151 109-194 (536)
359 PRK09687 putative lyase; Provi 74.4 67 0.0015 29.1 27.8 119 313-467 141-260 (280)
360 cd00280 TRFH Telomeric Repeat 74.1 49 0.0011 27.3 10.3 48 138-185 85-139 (200)
361 KOG4077 Cytochrome c oxidase, 74.1 36 0.00078 26.0 7.8 53 424-476 67-119 (149)
362 PRK15180 Vi polysaccharide bio 73.8 35 0.00077 32.7 9.6 94 285-381 295-389 (831)
363 KOG3364 Membrane protein invol 73.7 41 0.00088 26.2 8.5 72 438-523 29-101 (149)
364 KOG4507 Uncharacterized conser 73.6 25 0.00054 34.7 8.7 136 67-209 588-723 (886)
365 KOG4648 Uncharacterized conser 73.4 10 0.00022 34.5 5.8 91 94-186 104-194 (536)
366 PF10475 DUF2450: Protein of u 72.9 40 0.00088 30.7 9.9 103 412-520 104-224 (291)
367 PRK09687 putative lyase; Provi 72.8 74 0.0016 28.8 29.2 233 85-359 35-277 (280)
368 PF07163 Pex26: Pex26 protein; 72.8 47 0.001 29.5 9.5 88 129-220 90-182 (309)
369 KOG1550 Extracellular protein 72.0 1.2E+02 0.0026 30.8 27.1 186 173-380 228-428 (552)
370 KOG4642 Chaperone-dependent E3 70.8 71 0.0015 27.8 10.7 117 99-219 22-140 (284)
371 KOG0890 Protein kinase of the 70.4 2.4E+02 0.0052 33.7 25.9 143 66-220 1397-1542(2382)
372 PF14689 SPOB_a: Sensor_kinase 70.3 15 0.00033 24.0 4.8 47 422-470 6-52 (62)
373 PF11846 DUF3366: Domain of un 68.8 30 0.00066 29.1 7.8 53 417-469 119-172 (193)
374 PRK11619 lytic murein transgly 68.8 1.5E+02 0.0033 30.7 34.3 30 405-434 345-374 (644)
375 PF10345 Cohesin_load: Cohesin 67.5 1.6E+02 0.0034 30.4 38.2 198 68-267 37-261 (608)
376 TIGR02508 type_III_yscG type I 67.1 19 0.00042 26.1 5.0 87 65-161 18-106 (115)
377 PF10366 Vps39_1: Vacuolar sor 65.9 48 0.001 24.8 7.3 51 53-115 17-67 (108)
378 PF11848 DUF3368: Domain of un 65.0 25 0.00055 21.5 4.8 32 99-130 14-45 (48)
379 KOG4234 TPR repeat-containing 64.9 85 0.0018 26.5 12.0 91 287-378 103-197 (271)
380 KOG2396 HAT (Half-A-TPR) repea 64.7 1.5E+02 0.0032 29.1 32.7 86 74-162 93-179 (568)
381 COG3947 Response regulator con 64.0 1.1E+02 0.0024 27.5 15.0 60 317-377 282-341 (361)
382 KOG0545 Aryl-hydrocarbon recep 63.7 1E+02 0.0022 27.0 10.4 105 238-343 185-293 (329)
383 PF10366 Vps39_1: Vacuolar sor 63.1 61 0.0013 24.2 8.5 28 407-434 40-67 (108)
384 PF13762 MNE1: Mitochondrial s 63.0 75 0.0016 25.2 9.5 82 89-170 41-128 (145)
385 PF07575 Nucleopor_Nup85: Nup8 63.0 95 0.0021 31.6 11.2 146 300-450 391-539 (566)
386 PF12968 DUF3856: Domain of Un 62.8 37 0.00079 25.7 5.9 69 230-305 54-126 (144)
387 COG0735 Fur Fe2+/Zn2+ uptake r 62.5 62 0.0013 25.8 7.9 45 111-156 10-54 (145)
388 smart00028 TPR Tetratricopepti 62.3 15 0.00032 18.9 3.3 25 443-467 3-27 (34)
389 COG4455 ImpE Protein of avirul 61.8 1E+02 0.0023 26.4 13.6 77 159-240 3-81 (273)
390 PRK10941 hypothetical protein; 61.4 1.1E+02 0.0024 27.4 10.0 80 159-243 183-263 (269)
391 smart00386 HAT HAT (Half-A-TPR 61.4 20 0.00044 18.9 3.8 29 66-95 1-29 (33)
392 PF11663 Toxin_YhaV: Toxin wit 60.6 11 0.00023 29.2 3.0 30 66-97 109-138 (140)
393 PF09670 Cas_Cas02710: CRISPR- 60.1 1.6E+02 0.0035 28.1 11.7 57 413-470 138-198 (379)
394 PF11848 DUF3368: Domain of un 60.0 37 0.0008 20.8 4.8 36 204-239 10-45 (48)
395 PF12862 Apc5: Anaphase-promot 59.9 61 0.0013 23.4 6.9 54 416-469 8-69 (94)
396 COG5187 RPN7 26S proteasome re 59.4 1.3E+02 0.0028 27.0 9.6 45 474-518 171-217 (412)
397 KOG1839 Uncharacterized protei 59.4 66 0.0014 35.3 9.3 163 204-372 940-1122(1236)
398 KOG2063 Vacuolar assembly/sort 58.9 2.6E+02 0.0056 30.0 19.7 208 198-419 506-745 (877)
399 PF09986 DUF2225: Uncharacteri 58.0 1.2E+02 0.0027 26.1 10.7 103 207-310 88-196 (214)
400 KOG4507 Uncharacterized conser 57.8 76 0.0017 31.5 8.7 152 84-242 568-721 (886)
401 PF14853 Fis1_TPR_C: Fis1 C-te 57.4 39 0.00085 21.3 4.7 30 411-442 6-35 (53)
402 KOG2168 Cullins [Cell cycle co 57.3 2.6E+02 0.0056 29.5 20.8 21 504-524 718-738 (835)
403 PF13934 ELYS: Nuclear pore co 57.2 87 0.0019 27.3 8.5 113 89-216 78-196 (226)
404 cd08819 CARD_MDA5_2 Caspase ac 56.4 70 0.0015 22.7 7.0 66 298-369 21-86 (88)
405 PRK10941 hypothetical protein; 55.0 1.5E+02 0.0034 26.5 9.8 57 94-151 188-244 (269)
406 PF12862 Apc5: Anaphase-promot 54.1 65 0.0014 23.2 6.2 23 163-185 47-69 (94)
407 PF11846 DUF3366: Domain of un 54.0 73 0.0016 26.8 7.5 34 310-343 140-173 (193)
408 PF08311 Mad3_BUB1_I: Mad3/BUB 54.0 1E+02 0.0022 23.8 8.4 26 405-430 98-123 (126)
409 KOG4279 Serine/threonine prote 53.0 2.6E+02 0.0055 29.1 11.5 125 174-315 180-321 (1226)
410 KOG0403 Neoplastic transformat 52.8 2.2E+02 0.0048 27.4 16.6 26 199-224 348-373 (645)
411 PF04190 DUF410: Protein of un 52.5 1.7E+02 0.0037 26.1 17.4 27 405-431 89-115 (260)
412 PF09454 Vps23_core: Vps23 cor 52.2 44 0.00096 22.2 4.5 49 85-134 6-54 (65)
413 PRK10564 maltose regulon perip 51.8 29 0.00063 31.2 4.7 39 89-127 259-297 (303)
414 KOG0687 26S proteasome regulat 51.7 2E+02 0.0043 26.5 12.3 94 329-433 37-131 (393)
415 PF14853 Fis1_TPR_C: Fis1 C-te 51.7 59 0.0013 20.5 5.4 25 446-470 6-30 (53)
416 PF14669 Asp_Glu_race_2: Putat 51.4 1.5E+02 0.0032 24.9 16.0 56 319-374 137-206 (233)
417 PF14561 TPR_20: Tetratricopep 51.1 89 0.0019 22.4 8.5 31 156-186 21-51 (90)
418 KOG3364 Membrane protein invol 50.7 1.2E+02 0.0026 23.8 10.2 78 404-481 30-111 (149)
419 KOG2062 26S proteasome regulat 50.5 3.1E+02 0.0068 28.5 24.4 45 472-517 515-561 (929)
420 PHA02875 ankyrin repeat protei 49.9 2.5E+02 0.0054 27.1 16.4 11 166-176 74-84 (413)
421 KOG4567 GTPase-activating prot 49.7 1.2E+02 0.0025 27.6 7.9 58 299-361 263-320 (370)
422 PF15297 CKAP2_C: Cytoskeleton 49.5 1.1E+02 0.0023 28.4 7.9 64 103-168 119-186 (353)
423 PF00244 14-3-3: 14-3-3 protei 49.2 1.8E+02 0.004 25.5 9.9 59 284-342 6-65 (236)
424 KOG4567 GTPase-activating prot 49.2 2.1E+02 0.0045 26.1 9.9 44 334-377 263-306 (370)
425 KOG1308 Hsp70-interacting prot 49.0 11 0.00024 34.3 1.7 91 98-190 125-215 (377)
426 KOG2908 26S proteasome regulat 49.0 2.2E+02 0.0048 26.3 10.0 90 281-370 77-178 (380)
427 PF11663 Toxin_YhaV: Toxin wit 49.0 24 0.00051 27.3 3.2 31 208-240 107-137 (140)
428 PRK13342 recombination factor 48.3 2.7E+02 0.0058 27.0 19.1 38 418-455 242-279 (413)
429 PF14561 TPR_20: Tetratricopep 48.2 1E+02 0.0022 22.1 8.5 58 79-137 15-73 (90)
430 COG0735 Fur Fe2+/Zn2+ uptake r 48.1 85 0.0019 25.0 6.5 64 75-139 9-72 (145)
431 KOG2300 Uncharacterized conser 47.0 2.9E+02 0.0063 27.1 28.2 360 67-433 62-512 (629)
432 PF11817 Foie-gras_1: Foie gra 46.8 1.6E+02 0.0034 26.1 8.7 61 446-519 183-244 (247)
433 KOG0376 Serine-threonine phosp 46.5 59 0.0013 31.3 6.1 104 130-242 12-116 (476)
434 PF04910 Tcf25: Transcriptiona 46.4 2.6E+02 0.0057 26.4 21.4 112 231-342 40-167 (360)
435 KOG0292 Vesicle coat complex C 46.0 4E+02 0.0087 28.4 19.4 75 453-527 1003-1118(1202)
436 PF10516 SHNi-TPR: SHNi-TPR; 45.4 48 0.001 19.2 3.4 32 233-264 3-34 (38)
437 PF12926 MOZART2: Mitotic-spin 45.2 1.1E+02 0.0024 21.7 7.1 42 108-149 29-70 (88)
438 KOG2034 Vacuolar sorting prote 45.1 4.1E+02 0.0089 28.3 24.3 43 201-252 509-551 (911)
439 PF02184 HAT: HAT (Half-A-TPR) 44.4 50 0.0011 18.2 3.1 25 421-447 2-26 (32)
440 KOG2034 Vacuolar sorting prote 44.3 4.2E+02 0.0092 28.2 24.4 295 130-459 366-679 (911)
441 KOG2422 Uncharacterized conser 44.1 3.5E+02 0.0076 27.2 18.2 168 209-376 251-446 (665)
442 cd08819 CARD_MDA5_2 Caspase ac 43.9 1.2E+02 0.0025 21.6 6.8 36 134-174 48-83 (88)
443 COG3947 Response regulator con 43.6 2.5E+02 0.0055 25.4 17.8 160 295-469 149-341 (361)
444 PF03745 DUF309: Domain of unk 42.9 95 0.0021 20.3 6.3 50 415-464 8-62 (62)
445 PF04190 DUF410: Protein of un 42.9 2.5E+02 0.0054 25.1 20.2 25 313-337 89-113 (260)
446 KOG0991 Replication factor C, 42.9 2.3E+02 0.005 24.8 12.1 104 134-241 171-282 (333)
447 PRK10564 maltose regulon perip 42.6 47 0.001 29.9 4.6 37 198-234 259-295 (303)
448 PF03745 DUF309: Domain of unk 42.4 71 0.0015 20.9 4.3 47 98-144 10-61 (62)
449 PF08311 Mad3_BUB1_I: Mad3/BUB 42.3 1.6E+02 0.0035 22.7 8.6 43 424-466 81-124 (126)
450 KOG2659 LisH motif-containing 41.8 2.3E+02 0.005 24.5 9.7 65 404-470 24-93 (228)
451 COG5108 RPO41 Mitochondrial DN 41.3 2.2E+02 0.0048 29.1 9.1 78 162-242 33-114 (1117)
452 PRK13342 recombination factor 41.2 3.4E+02 0.0075 26.3 18.6 98 160-261 230-335 (413)
453 PRK09462 fur ferric uptake reg 40.8 1.6E+02 0.0034 23.5 7.1 61 303-364 6-67 (148)
454 PF09670 Cas_Cas02710: CRISPR- 40.2 3.4E+02 0.0074 26.0 11.6 50 99-149 143-196 (379)
455 PF11123 DNA_Packaging_2: DNA 40.1 89 0.0019 21.2 4.4 33 67-100 12-44 (82)
456 PRK11639 zinc uptake transcrip 39.7 1.7E+02 0.0037 24.0 7.3 61 304-365 16-76 (169)
457 KOG0403 Neoplastic transformat 39.3 3.7E+02 0.008 26.1 23.7 98 409-507 512-616 (645)
458 PF11817 Foie-gras_1: Foie gra 39.1 1.2E+02 0.0026 26.8 6.8 58 162-222 183-244 (247)
459 KOG0687 26S proteasome regulat 38.9 3.2E+02 0.0069 25.2 16.0 39 281-319 106-148 (393)
460 cd02680 MIT_calpain7_2 MIT: do 38.5 96 0.0021 21.3 4.6 12 454-465 19-30 (75)
461 PF06957 COPI_C: Coatomer (COP 38.4 1.2E+02 0.0025 29.3 6.7 53 475-527 280-334 (422)
462 PF09454 Vps23_core: Vps23 cor 37.8 60 0.0013 21.6 3.4 49 120-169 6-54 (65)
463 PF10255 Paf67: RNA polymerase 37.5 91 0.002 29.8 5.9 66 406-471 122-194 (404)
464 KOG1839 Uncharacterized protei 37.4 4.1E+02 0.0089 29.7 11.0 162 133-302 943-1122(1236)
465 cd07153 Fur_like Ferric uptake 36.3 79 0.0017 23.8 4.6 46 93-138 6-51 (116)
466 COG2976 Uncharacterized protei 36.2 2.7E+02 0.0058 23.6 18.1 128 280-436 55-189 (207)
467 KOG1308 Hsp70-interacting prot 35.0 40 0.00087 30.9 3.0 96 134-235 126-221 (377)
468 TIGR02508 type_III_yscG type I 34.4 1.9E+02 0.0041 21.3 8.1 52 411-468 44-95 (115)
469 PRK11639 zinc uptake transcrip 34.3 2E+02 0.0044 23.6 6.9 44 93-136 31-74 (169)
470 PF10255 Paf67: RNA polymerase 34.0 2.5E+02 0.0054 27.0 8.1 61 316-376 124-191 (404)
471 PF15297 CKAP2_C: Cytoskeleton 33.9 3.4E+02 0.0074 25.3 8.6 65 175-241 121-185 (353)
472 cd02682 MIT_AAA_Arch MIT: doma 33.8 1.6E+02 0.0035 20.3 5.1 35 234-268 9-43 (75)
473 PHA02875 ankyrin repeat protei 33.5 4.5E+02 0.0097 25.3 15.4 136 66-219 13-155 (413)
474 PF09868 DUF2095: Uncharacteri 33.3 1.6E+02 0.0035 22.1 5.2 31 93-124 67-97 (128)
475 COG4259 Uncharacterized protei 32.9 1.7E+02 0.0038 21.4 5.2 41 478-518 57-97 (121)
476 PRK13184 pknD serine/threonine 32.8 7E+02 0.015 27.4 22.8 332 90-468 478-867 (932)
477 PF00244 14-3-3: 14-3-3 protei 32.7 3.4E+02 0.0075 23.8 11.6 50 385-434 15-65 (236)
478 KOG0376 Serine-threonine phosp 32.4 1.1E+02 0.0024 29.7 5.5 98 66-167 18-115 (476)
479 cd02679 MIT_spastin MIT: domai 32.3 93 0.002 21.7 3.8 18 505-522 51-68 (79)
480 KOG1114 Tripeptidyl peptidase 32.2 6.9E+02 0.015 27.1 14.0 120 328-455 1161-1281(1304)
481 PF02847 MA3: MA3 domain; Int 31.9 2E+02 0.0044 21.4 6.2 17 323-339 11-27 (113)
482 KOG0292 Vesicle coat complex C 31.8 80 0.0017 33.1 4.8 118 384-525 656-785 (1202)
483 KOG2471 TPR repeat-containing 31.8 5.1E+02 0.011 25.6 11.9 81 406-505 283-381 (696)
484 COG5108 RPO41 Mitochondrial DN 31.6 4.1E+02 0.0089 27.3 9.2 49 411-459 33-83 (1117)
485 PF05944 Phage_term_smal: Phag 31.5 2.5E+02 0.0055 21.9 7.8 29 90-118 51-79 (132)
486 PF11838 ERAP1_C: ERAP1-like C 31.5 4.2E+02 0.009 24.4 15.7 177 314-531 129-313 (324)
487 KOG2471 TPR repeat-containing 31.3 5.3E+02 0.011 25.5 18.0 119 323-454 249-382 (696)
488 KOG4642 Chaperone-dependent E3 31.1 3.7E+02 0.008 23.7 15.3 84 290-377 21-106 (284)
489 COG0790 FOG: TPR repeat, SEL1 30.3 4.1E+02 0.009 24.0 23.2 91 211-310 128-222 (292)
490 PF01475 FUR: Ferric uptake re 30.1 77 0.0017 24.1 3.6 46 92-137 12-57 (120)
491 PRK14136 recX recombination re 29.7 4.4E+02 0.0096 24.1 13.7 84 347-440 160-243 (309)
492 COG0790 FOG: TPR repeat, SEL1 29.5 4.3E+02 0.0093 23.9 23.1 19 294-312 128-146 (292)
493 COG4003 Uncharacterized protei 29.4 1.8E+02 0.004 20.2 4.6 30 93-123 37-66 (98)
494 TIGR01503 MthylAspMut_E methyl 29.4 5.5E+02 0.012 25.1 10.7 125 137-268 69-206 (480)
495 PF04090 RNA_pol_I_TF: RNA pol 29.4 3.6E+02 0.0077 22.9 11.2 25 91-115 45-69 (199)
496 PRK13341 recombination factor 29.1 7.2E+02 0.016 26.4 15.8 22 169-190 270-291 (725)
497 cd07153 Fur_like Ferric uptake 28.8 1.7E+02 0.0038 21.9 5.4 47 202-248 6-52 (116)
498 KOG4521 Nuclear pore complex, 28.7 8.6E+02 0.019 27.2 13.5 160 354-522 925-1131(1480)
499 PRK13341 recombination factor 28.7 7.3E+02 0.016 26.3 19.4 51 405-456 258-308 (725)
500 PRK14700 recombination factor 28.6 4.6E+02 0.01 24.0 17.5 175 68-262 41-232 (300)
No 1
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=3.3e-63 Score=506.00 Aligned_cols=440 Identities=18% Similarity=0.261 Sum_probs=384.0
Q ss_pred cCCHHHHHHHHHHHHHcCC-CCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCcchHHH
Q 038190 65 EVELNDALCFFNYMIHMQP-TPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFV 143 (531)
Q Consensus 65 ~g~~~~A~~~~~~~~~~~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~ 143 (531)
.|++++|+++|++|.+.+. .++..+++.++.+|.+.|.+++|+.+|+.|.. ||..+|+.++.+|++.|+++.|.+
T Consensus 383 ~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Tyn~LL~a~~k~g~~e~A~~ 458 (1060)
T PLN03218 383 DGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTFNMLMSVCASSQDIDGALR 458 (1060)
T ss_pred CcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHHHHHHHHHHhCcCHHHHHH
Confidence 4699999999999999885 46777778888888888889999888888863 888899999999999999999999
Q ss_pred HHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCCCcHHhHHHHHHHHHhcCChhHHHHHHHHHh
Q 038190 144 ALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMK 223 (531)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 223 (531)
+|+.|.+.|+.||..+|+.+|.+|++.|++++|.++|++|...|+.| |..+|+.||.+|++.|++++|.++|++|.
T Consensus 459 lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~P----dvvTynaLI~gy~k~G~~eeAl~lf~~M~ 534 (1060)
T PLN03218 459 VLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEA----NVHTFGALIDGCARAGQVAKAFGAYGIMR 534 (1060)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 99999888888899999999999999999999999999998877664 88899999999999999999999999998
Q ss_pred hCCCCCCHhhHHHHHHHHHhcCChhhhhcchHHHHHHHHHHHh--CCCCCCccccCCHhhHHHHHHHHhcCCCHHHHHHH
Q 038190 224 GRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVN--GNGELGVICHPDVLSYCSIINSLCKDVLVDKAKEL 301 (531)
Q Consensus 224 ~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~ 301 (531)
+.|+.||..+|+.+|.+|++.|++++|.. +|+.|.. .+ +.||..+|+.++.+|++.|++++|.++
T Consensus 535 ~~Gv~PD~vTYnsLI~a~~k~G~~deA~~-------lf~eM~~~~~g------i~PD~vTynaLI~ay~k~G~ldeA~el 601 (1060)
T PLN03218 535 SKNVKPDRVVFNALISACGQSGAVDRAFD-------VLAEMKAETHP------IDPDHITVGALMKACANAGQVDRAKEV 601 (1060)
T ss_pred HcCCCCCHHHHHHHHHHHHHCCCHHHHHH-------HHHHHHHhcCC------CCCcHHHHHHHHHHHHHCCCHHHHHHH
Confidence 88888999999999999998888888887 8888876 34 678888999999999999999999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 038190 302 FLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVR 381 (531)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~ 381 (531)
|+.|.+.|+.|+..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++|++|.+.|+.
T Consensus 602 f~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~ 681 (1060)
T PLN03218 602 YQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIK 681 (1060)
T ss_pred HHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC
Confidence 99999888888999999999999999999999999999998888899899999999999999999999999999888888
Q ss_pred CC-------------cccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHhhhCCCCCcHHHHHHHH
Q 038190 382 PD-------------NSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMI 448 (531)
Q Consensus 382 ~~-------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~ 448 (531)
|+ .+.+++|.++|+.|.+.++.||..+|+.||.+|++.|++++|.++|++|.+.|+.||..+|+.++
T Consensus 682 pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL 761 (1060)
T PLN03218 682 LGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILL 761 (1060)
T ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 88 67888899999998888888999999999999999999999999999998888899999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHH------------H-----------------------------hhHHHHHHHHHHHHHc
Q 038190 449 CGLCIEGGIEKAYDLLPDMEEK------------I-----------------------------RECLKAIELLHKMAKR 487 (531)
Q Consensus 449 ~~~~~~g~~~~A~~~~~~~~~~------------i-----------------------------~~~~~a~~~~~~~~~~ 487 (531)
.+|++.|++++|.++|++|.+. + +..++|+.+|++|++.
T Consensus 762 ~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~ 841 (1060)
T PLN03218 762 VASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISA 841 (1060)
T ss_pred HHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHC
Confidence 9999999999999999888775 1 1236789999999999
Q ss_pred CCCCCHHHHHHHHHHHhccCChhHHHhhHHHhhhcchh
Q 038190 488 YVKPDEITVSILEELLNKDENCHECMNLLPSFLSRNQE 525 (531)
Q Consensus 488 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 525 (531)
|+.||..||+.++.++++.+..+.+..+++.|...+..
T Consensus 842 Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~ 879 (1060)
T PLN03218 842 GTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADS 879 (1060)
T ss_pred CCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCC
Confidence 99999999999998888888888888888877665543
No 2
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=8.6e-62 Score=495.64 Aligned_cols=442 Identities=19% Similarity=0.246 Sum_probs=414.3
Q ss_pred cCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCcchHHHH
Q 038190 65 EVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVA 144 (531)
Q Consensus 65 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~ 144 (531)
.|.+++|..+|+.|. .|+..+|+.+|.+|++.|+++.|.++|++|.+.|+.||..+|+.+|.+|++.|+++.|.++
T Consensus 419 ~g~~~eAl~lf~~M~----~pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~v 494 (1060)
T PLN03218 419 QRAVKEAFRFAKLIR----NPTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEV 494 (1060)
T ss_pred CCCHHHHHHHHHHcC----CCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHH
Confidence 358999999999984 4899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCCCcHHhHHHHHHHHHhcCChhHHHHHHHHHhh
Q 038190 145 LGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKG 224 (531)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 224 (531)
|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|...|+.| |..+|+.||.+|++.|++++|.++|++|..
T Consensus 495 f~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~P----D~vTYnsLI~a~~k~G~~deA~~lf~eM~~ 570 (1060)
T PLN03218 495 FHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKP----DRVVFNALISACGQSGAVDRAFDVLAEMKA 570 (1060)
T ss_pred HHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999888775 899999999999999999999999999986
Q ss_pred --CCCCCCHhhHHHHHHHHHhcCChhhhhcchHHHHHHHHHHHhCCCCCCccccCCHhhHHHHHHHHhcCCCHHHHHHHH
Q 038190 225 --RGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELF 302 (531)
Q Consensus 225 --~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~ 302 (531)
.|+.||..+|+.+|.+|++.|++++|.+ +|+.|.+.+ +.|+..+|+.+|.+|++.|++++|.++|
T Consensus 571 ~~~gi~PD~vTynaLI~ay~k~G~ldeA~e-------lf~~M~e~g------i~p~~~tynsLI~ay~k~G~~deAl~lf 637 (1060)
T PLN03218 571 ETHPIDPDHITVGALMKACANAGQVDRAKE-------VYQMIHEYN------IKGTPEVYTIAVNSCSQKGDWDFALSIY 637 (1060)
T ss_pred hcCCCCCcHHHHHHHHHHHHHCCCHHHHHH-------HHHHHHHcC------CCCChHHHHHHHHHHHhcCCHHHHHHHH
Confidence 6899999999999999999999999888 999999999 8999999999999999999999999999
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 038190 303 LDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRP 382 (531)
Q Consensus 303 ~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~ 382 (531)
++|.+.|+.||..+|+.++.+|++.|++++|.++|++|.+.|+.|+..+|+.+|.+|++.|++++|.++|++|.+.|+.|
T Consensus 638 ~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~P 717 (1060)
T PLN03218 638 DDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRP 717 (1060)
T ss_pred HHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred C-------------cccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHhhhCCCCCcHHHHHHHHH
Q 038190 383 D-------------NSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMIC 449 (531)
Q Consensus 383 ~-------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~ 449 (531)
+ .+.+++|.++|+.|.+.|+.||..+|+.++.+|++.|++++|.++|++|.+.|+.||..+|+.++.
T Consensus 718 dvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIg 797 (1060)
T PLN03218 718 TVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITG 797 (1060)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 9 788999999999999999999999999999999999999999999999999999999999999987
Q ss_pred HHHH----c-------------------CCHHHHHHHHHHHHHH------------H------hhHHHHHHHHHHHHHcC
Q 038190 450 GLCI----E-------------------GGIEKAYDLLPDMEEK------------I------RECLKAIELLHKMAKRY 488 (531)
Q Consensus 450 ~~~~----~-------------------g~~~~A~~~~~~~~~~------------i------~~~~~a~~~~~~~~~~~ 488 (531)
.|.+ . +..++|+.+|++|.+. + +....+..+++.|...+
T Consensus 798 lc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~ 877 (1060)
T PLN03218 798 LCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISA 877 (1060)
T ss_pred HHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCC
Confidence 6542 1 2246799999999987 1 56777788888887778
Q ss_pred CCCCHHHHHHHHHHHhccCChhHHHhhHHHhhhcchhhhhc
Q 038190 489 VKPDEITVSILEELLNKDENCHECMNLLPSFLSRNQEESKL 529 (531)
Q Consensus 489 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 529 (531)
..|+..+|+++++++.+. .++|..+++.|...|..|+..
T Consensus 878 ~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~~~Gi~p~~~ 916 (1060)
T PLN03218 878 DSQKQSNLSTLVDGFGEY--DPRAFSLLEEAASLGVVPSVS 916 (1060)
T ss_pred CCcchhhhHHHHHhhccC--hHHHHHHHHHHHHcCCCCCcc
Confidence 889999999999998442 468999999999999988754
No 3
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=3e-60 Score=482.50 Aligned_cols=435 Identities=18% Similarity=0.226 Sum_probs=406.5
Q ss_pred cCCHHHHHHHHHHHHHcC-CCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCcchHHH
Q 038190 65 EVELNDALCFFNYMIHMQ-PTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFV 143 (531)
Q Consensus 65 ~g~~~~A~~~~~~~~~~~-~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~ 143 (531)
.|++++|+++|++|...+ ..|+..+|+.++.+|++.++++.+.+++..|.+.|+.||..+|+.++.+|++.|+++.|.+
T Consensus 100 ~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~ 179 (697)
T PLN03081 100 CGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARR 179 (697)
T ss_pred CCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHhcCCCHHHHHH
Confidence 348999999999998865 5789999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCCCcHHhHHHHHHHHHhcCChhHHHHHHHHHh
Q 038190 144 ALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMK 223 (531)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 223 (531)
+|++|. .||..+|++++.+|++.|++++|+++|++|.+.|..| +..+|+.++.+|++.|..+.+.+++..+.
T Consensus 180 lf~~m~----~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p----~~~t~~~ll~a~~~~~~~~~~~~l~~~~~ 251 (697)
T PLN03081 180 LFDEMP----ERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDA----EPRTFVVMLRASAGLGSARAGQQLHCCVL 251 (697)
T ss_pred HHhcCC----CCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCC----ChhhHHHHHHHHhcCCcHHHHHHHHHHHH
Confidence 999996 4799999999999999999999999999999887765 89999999999999999999999999999
Q ss_pred hCCCCCCHhhHHHHHHHHHhcCChhhhhcchHHHHHHHHHHHhCCCCCCccccCCHhhHHHHHHHHhcCCCHHHHHHHHH
Q 038190 224 GRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFL 303 (531)
Q Consensus 224 ~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~ 303 (531)
+.|+.||..+|+.++++|++.|++++|.. +|+.|. .+|..+|+.++.+|++.|++++|.++|+
T Consensus 252 ~~g~~~d~~~~n~Li~~y~k~g~~~~A~~-------vf~~m~----------~~~~vt~n~li~~y~~~g~~~eA~~lf~ 314 (697)
T PLN03081 252 KTGVVGDTFVSCALIDMYSKCGDIEDARC-------VFDGMP----------EKTTVAWNSMLAGYALHGYSEEALCLYY 314 (697)
T ss_pred HhCCCccceeHHHHHHHHHHCCCHHHHHH-------HHHhCC----------CCChhHHHHHHHHHHhCCCHHHHHHHHH
Confidence 99999999999999999999999999988 998884 4678999999999999999999999999
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 038190 304 DMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD 383 (531)
Q Consensus 304 ~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~ 383 (531)
+|.+.|+.||..||+.++.+|++.|++++|.+++..|.+.|+.||..+|+.|+.+|++.|++++|.++|++|.+.++...
T Consensus 315 ~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~ 394 (697)
T PLN03081 315 EMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISW 394 (697)
T ss_pred HHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999976443322
Q ss_pred ---------cccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHhhh-CCCCCcHHHHHHHHHHHHH
Q 038190 384 ---------NSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPR-YGPEPNVVTYTVMICGLCI 453 (531)
Q Consensus 384 ---------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~g~~p~~~~~~~l~~~~~~ 453 (531)
.+..++|.++|++|.+.|+.||..||++++.+|++.|++++|.++|+.|.+ .|+.|+..+|+.++++|++
T Consensus 395 n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r 474 (697)
T PLN03081 395 NALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGR 474 (697)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHh
Confidence 788999999999999999999999999999999999999999999999986 6999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHH---------------HhhHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhccCChhHHHhhHH
Q 038190 454 EGGIEKAYDLLPDMEEK---------------IRECLKAIELLHKMAKRYVKPD-EITVSILEELLNKDENCHECMNLLP 517 (531)
Q Consensus 454 ~g~~~~A~~~~~~~~~~---------------i~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~ 517 (531)
.|++++|.+++++|... .|+.+.|..+++++.+ ..|+ ..+|..++.+|++.|++++|.++++
T Consensus 475 ~G~~~eA~~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~--~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~ 552 (697)
T PLN03081 475 EGLLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYG--MGPEKLNNYVVLLNLYNSSGRQAEAAKVVE 552 (697)
T ss_pred cCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhC--CCCCCCcchHHHHHHHHhCCCHHHHHHHHH
Confidence 99999999999987533 2889999999999974 4454 6799999999999999999999999
Q ss_pred Hhhhcchhh
Q 038190 518 SFLSRNQEE 526 (531)
Q Consensus 518 ~~~~~~~~~ 526 (531)
.|..++...
T Consensus 553 ~m~~~g~~k 561 (697)
T PLN03081 553 TLKRKGLSM 561 (697)
T ss_pred HHHHcCCcc
Confidence 999998653
No 4
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=2.1e-59 Score=487.68 Aligned_cols=426 Identities=23% Similarity=0.329 Sum_probs=320.3
Q ss_pred CcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCcchHHH
Q 038190 64 GEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFV 143 (531)
Q Consensus 64 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~ 143 (531)
+.|+++.|+++|++| +.||..+||.+|.+|++.|++++|+++|++|...|+.||..||+.++.+|++.+++..+.+
T Consensus 133 ~~g~~~~A~~~f~~m----~~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~ 208 (857)
T PLN03077 133 RFGELVHAWYVFGKM----PERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGRE 208 (857)
T ss_pred hCCChHHHHHHHhcC----CCCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHH
Confidence 556888889999888 5678999999999999999999999999999999999999999999999999899999999
Q ss_pred HHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCCCcHHhHHHHHHHHHhcCChhHHHHHHHHHh
Q 038190 144 ALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMK 223 (531)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 223 (531)
++..+.+.|+.|+..++++|+.+|++.|+++.|.++|++|.. ||..+||++|.+|++.|++++|.++|++|.
T Consensus 209 ~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~--------~d~~s~n~li~~~~~~g~~~eAl~lf~~M~ 280 (857)
T PLN03077 209 VHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPR--------RDCISWNAMISGYFENGECLEGLELFFTMR 280 (857)
T ss_pred HHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCC--------CCcchhHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 999999999888888899999999999988888888888853 477888888888888888888888888888
Q ss_pred hCCCCCCHhhHHHHHHHHHhcCChhhhhcchHHHHHHHHHHHhCCCCCCcccc---------------------------
Q 038190 224 GRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICH--------------------------- 276 (531)
Q Consensus 224 ~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~--------------------------- 276 (531)
+.|+.||..||+.++.+|++.|+.+.+.+ ++..+.+.+ ..
T Consensus 281 ~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~-------l~~~~~~~g------~~~d~~~~n~Li~~y~k~g~~~~A~~vf~ 347 (857)
T PLN03077 281 ELSVDPDLMTITSVISACELLGDERLGRE-------MHGYVVKTG------FAVDVSVCNSLIQMYLSLGSWGEAEKVFS 347 (857)
T ss_pred HcCCCCChhHHHHHHHHHHhcCChHHHHH-------HHHHHHHhC------CccchHHHHHHHHHHHhcCCHHHHHHHHh
Confidence 88888888888888888888777776665 444444444 33
Q ss_pred ----CCHhhHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHH
Q 038190 277 ----PDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSY 352 (531)
Q Consensus 277 ----~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~ 352 (531)
||..+|+.++.+|++.|++++|.++|++|.+.|+.||..||+.++.+|++.|+++.|.++++.+.+.|+.|+..+|
T Consensus 348 ~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~ 427 (857)
T PLN03077 348 RMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVA 427 (857)
T ss_pred hCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHH
Confidence 4455555555666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC---------cccHHHHHHHHHHHHhCCCCCCHHHHHH------------
Q 038190 353 NTLINSYSKIEKVEEALSLYGEMISMGVRPD---------NSCILEAAELFRTLHNTKFELDLTVFNC------------ 411 (531)
Q Consensus 353 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~---------~~~~~~a~~~~~~~~~~~~~~~~~~~~~------------ 411 (531)
+.|+.+|++.|++++|.++|++|.+.++... .+..++|..+|++|.. ++.||..+|+.
T Consensus 428 n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~ 506 (857)
T PLN03077 428 NALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALM 506 (857)
T ss_pred HHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHH
Confidence 6666666666666666666655544322111 3344455555555543 24455554444
Q ss_pred -----------------------HHHHHHcCCChHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 038190 412 -----------------------LVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDME 468 (531)
Q Consensus 412 -----------------------l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 468 (531)
|+++|++.|++++|.++|+.+ .||..+|+.+|.+|+++|+.++|+++|++|.
T Consensus 507 ~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~ 581 (857)
T PLN03077 507 CGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-----EKDVVSWNILLTGYVAHGKGSMAVELFNRMV 581 (857)
T ss_pred HhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 444555555555555555544 4677888888889999999999999999988
Q ss_pred HH------------------HhhHHHHHHHHHHHH-HcCCCCCHHHHHHHHHHHhccCChhHHHhhHHHhh
Q 038190 469 EK------------------IRECLKAIELLHKMA-KRYVKPDEITVSILEELLNKDENCHECMNLLPSFL 520 (531)
Q Consensus 469 ~~------------------i~~~~~a~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 520 (531)
+. .|.+++|.++|+.|. +.|+.|+..+|++++++|++.|++++|.+++++|+
T Consensus 582 ~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~ 652 (857)
T PLN03077 582 ESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMP 652 (857)
T ss_pred HcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCC
Confidence 75 188899999999998 67899999999999999999999999999999986
No 5
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=2.3e-58 Score=479.80 Aligned_cols=439 Identities=22% Similarity=0.298 Sum_probs=378.3
Q ss_pred CcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCcchHHH
Q 038190 64 GEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFV 143 (531)
Q Consensus 64 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~ 143 (531)
+.|++++|+++|++|...|..||..+|+.++.+|+..+++..+.+++..|.+.|+.||..+++.|+.+|++.|+++.|..
T Consensus 164 ~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~ 243 (857)
T PLN03077 164 KAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARL 243 (857)
T ss_pred hCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHH
Confidence 55799999999999999999999999999999999888888899999999888888888888888888888888888888
Q ss_pred HHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCCCcHHhHHHHHHHHHhcCChhHHHHHHHHHh
Q 038190 144 ALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMK 223 (531)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 223 (531)
+|+.|. .+|..+||++|.+|++.|++++|+++|++|...|..| |..+|+.++.+|++.|+.+.|.+++..|.
T Consensus 244 lf~~m~----~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~P----d~~ty~~ll~a~~~~g~~~~a~~l~~~~~ 315 (857)
T PLN03077 244 VFDRMP----RRDCISWNAMISGYFENGECLEGLELFFTMRELSVDP----DLMTITSVISACELLGDERLGREMHGYVV 315 (857)
T ss_pred HHhcCC----CCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC----ChhHHHHHHHHHHhcCChHHHHHHHHHHH
Confidence 888875 4677888888888888888888888888888877665 77777777777777777777777777777
Q ss_pred hCCCCCCHhhHHHHHHHHHhcCChhhhhc------------------------chHHHHHHHHHHHhCCCCCCccccCCH
Q 038190 224 GRGIYPDAFVYNSLIRVYCCAVNWEDAKG------------------------NTSAALELHEEFVNGNGELGVICHPDV 279 (531)
Q Consensus 224 ~~g~~p~~~~~~~li~~~~~~~~~~~a~~------------------------~~~~a~~~~~~~~~~~~~~~~~~~~~~ 279 (531)
+.|+.||..+|+.++.+|++.|++++|.+ .+++|+++|+.|...+ +.||.
T Consensus 316 ~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g------~~Pd~ 389 (857)
T PLN03077 316 KTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDN------VSPDE 389 (857)
T ss_pred HhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhC------CCCCc
Confidence 77777777777777777777777777665 2356777999999998 89999
Q ss_pred hhHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 038190 280 LSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSY 359 (531)
Q Consensus 280 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~ 359 (531)
.||+.++.+|++.|+++.|.++++.|.+.|+.|+..+|+.|+.+|++.|++++|.++|++|.+ +|..+|+.+|.+|
T Consensus 390 ~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~d~vs~~~mi~~~ 465 (857)
T PLN03077 390 ITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPE----KDVISWTSIIAGL 465 (857)
T ss_pred eeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCC----CCeeeHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999875 4778899999999
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCC-------------cccHHHHHHHHHHHHhCCC------------------------
Q 038190 360 SKIEKVEEALSLYGEMISMGVRPD-------------NSCILEAAELFRTLHNTKF------------------------ 402 (531)
Q Consensus 360 ~~~~~~~~a~~~~~~~~~~~~~~~-------------~~~~~~a~~~~~~~~~~~~------------------------ 402 (531)
++.|+.++|+.+|++|.. ++.|+ .+.++.+.+++..+.+.|+
T Consensus 466 ~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~ 544 (857)
T PLN03077 466 RLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAW 544 (857)
T ss_pred HHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHH
Confidence 999999999999988875 47777 2334444444444433332
Q ss_pred ------CCCHHHHHHHHHHHHcCCChHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH------
Q 038190 403 ------ELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK------ 470 (531)
Q Consensus 403 ------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------ 470 (531)
.+|..+||++|.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|.+.|++++|.++|+.|.+.
T Consensus 545 ~~f~~~~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~ 624 (857)
T PLN03077 545 NQFNSHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPN 624 (857)
T ss_pred HHHHhcCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCc
Confidence 56889999999999999999999999999999999999999999999999999999999999999954
Q ss_pred -------------HhhHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChhHHHhhHHHhhhcch
Q 038190 471 -------------IRECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLLPSFLSRNQ 524 (531)
Q Consensus 471 -------------i~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 524 (531)
.|++++|.+++++| .++||..+|.+|+.+|...|+.+.+....+++..-.+
T Consensus 625 ~~~y~~lv~~l~r~G~~~eA~~~~~~m---~~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p 688 (857)
T PLN03077 625 LKHYACVVDLLGRAGKLTEAYNFINKM---PITPDPAVWGALLNACRIHRHVELGELAAQHIFELDP 688 (857)
T ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCC
Confidence 18999999999998 4789999999999999999999998888877765443
No 6
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=2.2e-56 Score=454.12 Aligned_cols=410 Identities=18% Similarity=0.224 Sum_probs=385.6
Q ss_pred CCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCC-CCCCHhhHHHHHHHHHccCCcchHHHHHHHHHHCCCCCChhhHH
Q 038190 83 PTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIG-LLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLG 161 (531)
Q Consensus 83 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g-~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 161 (531)
..++..+|+.+|..+.+.|++++|+++|++|...+ +.||..+|+.++.+|++.++++.+.+++..|.+.|+.||..+|+
T Consensus 83 ~~~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n 162 (697)
T PLN03081 83 IRKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMN 162 (697)
T ss_pred CCCCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHH
Confidence 34567799999999999999999999999998765 78999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCCCCCCcHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHH
Q 038190 162 CLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVY 241 (531)
Q Consensus 162 ~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~ 241 (531)
.++.+|++.|+++.|.++|++|.. ||..+||.++.+|++.|++++|.++|++|.+.|+.|+..||+.++.+|
T Consensus 163 ~Li~~y~k~g~~~~A~~lf~~m~~--------~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~ 234 (697)
T PLN03081 163 RVLLMHVKCGMLIDARRLFDEMPE--------RNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRAS 234 (697)
T ss_pred HHHHHHhcCCCHHHHHHHHhcCCC--------CCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHH
Confidence 999999999999999999999964 589999999999999999999999999999999999999999999999
Q ss_pred HhcCChhhhhcchHHHHHHHHHHHhCCCCCCccccCCHhhHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 038190 242 CCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLI 321 (531)
Q Consensus 242 ~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll 321 (531)
+..|....+.. ++..+.+.+ ..+|..+|+.++.+|++.|++++|.++|+.|.+ +|..+|+.++
T Consensus 235 ~~~~~~~~~~~-------l~~~~~~~g------~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~~~vt~n~li 297 (697)
T PLN03081 235 AGLGSARAGQQ-------LHCCVLKTG------VVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE----KTTVAWNSML 297 (697)
T ss_pred hcCCcHHHHHH-------HHHHHHHhC------CCccceeHHHHHHHHHHCCCHHHHHHHHHhCCC----CChhHHHHHH
Confidence 99998888877 999999998 899999999999999999999999999999964 5999999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-------------cccHH
Q 038190 322 DGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD-------------NSCIL 388 (531)
Q Consensus 322 ~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~-------------~~~~~ 388 (531)
.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.+++..|.+.|+.|+ .|.++
T Consensus 298 ~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~ 377 (697)
T PLN03081 298 AGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRME 377 (697)
T ss_pred HHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHH
Confidence 99999999999999999999999999999999999999999999999999999999999998 68899
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 038190 389 EAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDME 468 (531)
Q Consensus 389 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 468 (531)
+|.++|+.|.+ ||..+||+||.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|.+.|.+++|.++|+.|.
T Consensus 378 ~A~~vf~~m~~----~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~ 453 (697)
T PLN03081 378 DARNVFDRMPR----KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMS 453 (697)
T ss_pred HHHHHHHhCCC----CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHH
Confidence 99999999864 68999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HH-------------------HhhHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChhHHHhhHHHhhhcch
Q 038190 469 EK-------------------IRECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLLPSFLSRNQ 524 (531)
Q Consensus 469 ~~-------------------i~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 524 (531)
+. -|+.++|.+++++| ++.|+..+|++++.+|...|+++.|..+++++...++
T Consensus 454 ~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~---~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p 525 (697)
T PLN03081 454 ENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRA---PFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGP 525 (697)
T ss_pred HhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCC
Confidence 74 18899999988765 6789999999999999999999999999988765443
No 7
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.98 E-value=2.3e-27 Score=253.41 Aligned_cols=427 Identities=13% Similarity=0.039 Sum_probs=328.4
Q ss_pred cCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCcchHHHH
Q 038190 65 EVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVA 144 (531)
Q Consensus 65 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~ 144 (531)
.|++++|..+++.+....+. +..+|..+...+...|++++|...|+++.+.. +.+...+..+...+...|++++|...
T Consensus 444 ~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~ 521 (899)
T TIGR02917 444 SGQFDKALAAAKKLEKKQPD-NASLHNLLGAIYLGKGDLAKAREAFEKALSIE-PDFFPAAANLARIDIQEGNPDDAIQR 521 (899)
T ss_pred cCCHHHHHHHHHHHHHhCCC-CcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHCCCHHHHHHH
Confidence 34666777777666654433 55667777777777777777777777776654 34555666677777777777777777
Q ss_pred HHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCCCcHHhHHHHHHHHHhcCChhHHHHHHHHHhh
Q 038190 145 LGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKG 224 (531)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 224 (531)
++.+....+ .+..++..+...+.+.|+.++|...++++... .| .+...+..++..+...|++++|..+++.+.+
T Consensus 522 ~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 595 (899)
T TIGR02917 522 FEKVLTIDP-KNLRAILALAGLYLRTGNEEEAVAWLEKAAEL--NP---QEIEPALALAQYYLGKGQLKKALAILNEAAD 595 (899)
T ss_pred HHHHHHhCc-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--Cc---cchhHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 777776643 35667777777777788888888888777664 23 2556677778888888888888888888776
Q ss_pred CCCCCCHhhHHHHHHHHHhcCChhhhhcchHHHHHHHHHHHhCCCCCCccccCCHhhHHHHHHHHhcCCCHHHHHHHHHH
Q 038190 225 RGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLD 304 (531)
Q Consensus 225 ~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 304 (531)
. .+.+..+|..+..++...|++++|.. .++.+.... +.+...+..+..++...|++++|..+|+.
T Consensus 596 ~-~~~~~~~~~~l~~~~~~~~~~~~A~~-------~~~~~~~~~-------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 660 (899)
T TIGR02917 596 A-APDSPEAWLMLGRAQLAAGDLNKAVS-------SFKKLLALQ-------PDSALALLLLADAYAVMKNYAKAITSLKR 660 (899)
T ss_pred c-CCCCHHHHHHHHHHHHHcCCHHHHHH-------HHHHHHHhC-------CCChHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 4 23466778888888888888777777 666665543 34566777888888888888888888888
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-
Q 038190 305 MKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD- 383 (531)
Q Consensus 305 ~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~- 383 (531)
+.+.. +.+..++..+...+...|++++|.++++.+.+.+. .+...+..+...+...|++++|...|+.+...+..+.
T Consensus 661 ~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 738 (899)
T TIGR02917 661 ALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHP-KAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQN 738 (899)
T ss_pred HHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc-CChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCchH
Confidence 87753 33577888888888888888888888888887753 3667778888888899999999999988877543333
Q ss_pred ----------cccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHH
Q 038190 384 ----------NSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCI 453 (531)
Q Consensus 384 ----------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~ 453 (531)
.+..++|...++.+.+... .+...+..+...|...|++++|..+|+++.+.. +.++.+++.+...+..
T Consensus 739 ~~~l~~~~~~~g~~~~A~~~~~~~l~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~ 816 (899)
T TIGR02917 739 AIKLHRALLASGNTAEAVKTLEAWLKTHP-NDAVLRTALAELYLAQKDYDKAIKHYRTVVKKA-PDNAVVLNNLAWLYLE 816 (899)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHh
Confidence 5777888888888887653 478888999999999999999999999998763 4578888999999999
Q ss_pred cCCHHHHHHHHHHHHHH-----------------HhhHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChhHHHhhH
Q 038190 454 EGGIEKAYDLLPDMEEK-----------------IRECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLL 516 (531)
Q Consensus 454 ~g~~~~A~~~~~~~~~~-----------------i~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 516 (531)
.|+ .+|+.+++++... .|++++|..+++++++.+.. +..++..++.+|.+.|++++|.+++
T Consensus 817 ~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~ 894 (899)
T TIGR02917 817 LKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPE-AAAIRYHLALALLATGRKAEARKEL 894 (899)
T ss_pred cCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-ChHHHHHHHHHHHHcCCHHHHHHHH
Confidence 999 8899999988765 38899999999999987744 7888999999999999999999999
Q ss_pred HHhh
Q 038190 517 PSFL 520 (531)
Q Consensus 517 ~~~~ 520 (531)
++|.
T Consensus 895 ~~~~ 898 (899)
T TIGR02917 895 DKLL 898 (899)
T ss_pred HHHh
Confidence 9874
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.97 E-value=7.7e-26 Score=241.69 Aligned_cols=438 Identities=13% Similarity=0.036 Sum_probs=255.4
Q ss_pred cCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCcchHHHH
Q 038190 65 EVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVA 144 (531)
Q Consensus 65 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~ 144 (531)
.|++++|.++|+++.+..+. +...|..+...+...|++++|++.++.+.+.. +........++..+.+.|++++|..+
T Consensus 376 ~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~ 453 (899)
T TIGR02917 376 LGDFEKAAEYLAKATELDPE-NAAARTQLGISKLSQGDPSEAIADLETAAQLD-PELGRADLLLILSYLRSGQFDKALAA 453 (899)
T ss_pred CCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHhCCChHHHHHHHHHHHhhC-CcchhhHHHHHHHHHhcCCHHHHHHH
Confidence 35777777777777665443 45556666666666666666666666665543 11223333444445555555555555
Q ss_pred HHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCCCcHHhHHHHHHHHHhcCChhHHHHHHHHHhh
Q 038190 145 LGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKG 224 (531)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 224 (531)
++.+.... +.+..++..+..++...|++++|...|+++... .|+ +...+..+...+...|++++|.+.|+.+..
T Consensus 454 ~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~---~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 527 (899)
T TIGR02917 454 AKKLEKKQ-PDNASLHNLLGAIYLGKGDLAKAREAFEKALSI--EPD---FFPAAANLARIDIQEGNPDDAIQRFEKVLT 527 (899)
T ss_pred HHHHHHhC-CCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhh--CCC---cHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 55554432 223444455555555555555555555554443 221 333444444444444555555554444443
Q ss_pred CCCCCCHhhHHHHHHHHHhcCChhhhhcch---------------------------HHHHHHHHHHHhCCCCCCccccC
Q 038190 225 RGIYPDAFVYNSLIRVYCCAVNWEDAKGNT---------------------------SAALELHEEFVNGNGELGVICHP 277 (531)
Q Consensus 225 ~g~~p~~~~~~~li~~~~~~~~~~~a~~~~---------------------------~~a~~~~~~~~~~~~~~~~~~~~ 277 (531)
.+. .+..++..+...+...|+.++|...+ ++|+.+++.+.... +.
T Consensus 528 ~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-------~~ 599 (899)
T TIGR02917 528 IDP-KNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAA-------PD 599 (899)
T ss_pred hCc-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-------CC
Confidence 321 13334444444444444444443311 11111555554432 34
Q ss_pred CHhhHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 038190 278 DVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLIN 357 (531)
Q Consensus 278 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~ 357 (531)
+..+|..+..++...|++++|...|+.+.+.. +.+...+..+..+|.+.|++++|...|+++.+.... +..++..++.
T Consensus 600 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~ 677 (899)
T TIGR02917 600 SPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELKPD-NTEAQIGLAQ 677 (899)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-CHHHHHHHHH
Confidence 45566666666667777777777776666542 224555666666666677777777777766655322 4566666666
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCC------------cccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHH
Q 038190 358 SYSKIEKVEEALSLYGEMISMGVRPD------------NSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSA 425 (531)
Q Consensus 358 ~~~~~~~~~~a~~~~~~~~~~~~~~~------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 425 (531)
.+...|++++|..+++.+.+...... .+++++|...++.+..... +..++..++.++.+.|++++|
T Consensus 678 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A 755 (899)
T TIGR02917 678 LLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAP--SSQNAIKLHRALLASGNTAEA 755 (899)
T ss_pred HHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCC--CchHHHHHHHHHHHCCCHHHH
Confidence 77777777777777776665442221 5667777777777766543 335666677777777777777
Q ss_pred HHHHHHhhhCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-----------------HhhHHHHHHHHHHHHHcC
Q 038190 426 WELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK-----------------IRECLKAIELLHKMAKRY 488 (531)
Q Consensus 426 ~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----------------i~~~~~a~~~~~~~~~~~ 488 (531)
.+.++++.+.. +.+...+..+...|...|++++|++.|+++.+. .++ .+|+.+++++.+..
T Consensus 756 ~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~ 833 (899)
T TIGR02917 756 VKTLEAWLKTH-PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKLA 833 (899)
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhC
Confidence 77777776642 345667777777777777788887777777665 145 66777777777543
Q ss_pred CCCCHHHHHHHHHHHhccCChhHHHhhHHHhhhcchh
Q 038190 489 VKPDEITVSILEELLNKDENCHECMNLLPSFLSRNQE 525 (531)
Q Consensus 489 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 525 (531)
+.+..++..++.++.+.|++++|...++++...++.
T Consensus 834 -~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~ 869 (899)
T TIGR02917 834 -PNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPE 869 (899)
T ss_pred -CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 224556677888888888888888888888776654
No 9
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.91 E-value=1.3e-19 Score=194.44 Aligned_cols=428 Identities=14% Similarity=0.046 Sum_probs=297.0
Q ss_pred cCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCC------------------C-------
Q 038190 65 EVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGL------------------L------- 119 (531)
Q Consensus 65 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~------------------~------- 119 (531)
.|+.++|+..|+++.+..|. +...+..+...+...|++++|+..++++.+... .
T Consensus 160 ~g~~~~A~~~L~~ll~~~P~-~~~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l 238 (1157)
T PRK11447 160 PAQRPEAINQLQRLNADYPG-NTGLRNTLALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAAL 238 (1157)
T ss_pred CccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHH
Confidence 36899999999999997766 677888899999999999999999998754321 0
Q ss_pred -------CCHhhH---------------------HHHHHHHHccCCcchHHHHHHHHHHCCCCCChhhHHHHHHHHHhcC
Q 038190 120 -------PDFVSL---------------------NILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQG 171 (531)
Q Consensus 120 -------~~~~~~---------------------~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 171 (531)
|+...+ .....++...|++++|...|++.++..+. +..++..+..++.+.|
T Consensus 239 ~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~~~G~~~~~~g~~~~A~~~l~~aL~~~P~-~~~a~~~Lg~~~~~~g 317 (1157)
T PRK11447 239 QKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRARAQGLAAVDSGQGGKAIPELQQAVRANPK-DSEALGALGQAYSQQG 317 (1157)
T ss_pred HHHHHHCCCchHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcC
Confidence 110000 01133456779999999999999987543 7788899999999999
Q ss_pred ChHHHHHHHHHHHHcCCCCCCCCcHHhH------------HHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHhhHHHHHH
Q 038190 172 KFTEASGLFTKFVAFDCRPNVIPNVICY------------ASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIR 239 (531)
Q Consensus 172 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~------------~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~ 239 (531)
++++|+..|++..+..... +....| ......+.+.|++++|...|+++.+... .+...+..+..
T Consensus 318 ~~~eA~~~l~~Al~~~p~~---~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P-~~~~a~~~Lg~ 393 (1157)
T PRK11447 318 DRARAVAQFEKALALDPHS---SNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVDN-TDSYAVLGLGD 393 (1157)
T ss_pred CHHHHHHHHHHHHHhCCCc---cchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHH
Confidence 9999999999998763221 111112 1224567789999999999999987632 35666777888
Q ss_pred HHHhcCChhhhhcchHHHHHHHHHHHhCCCCCCccccCCHhhHH------------------------------------
Q 038190 240 VYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYC------------------------------------ 283 (531)
Q Consensus 240 ~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------------ 283 (531)
.+...|++++|+..++++++ .. +.+...+.
T Consensus 394 ~~~~~g~~~eA~~~y~~aL~-------~~-------p~~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l 459 (1157)
T PRK11447 394 VAMARKDYAAAERYYQQALR-------MD-------PGNTNAVRGLANLYRQQSPEKALAFIASLSASQRRSIDDIERSL 459 (1157)
T ss_pred HHHHCCCHHHHHHHHHHHHH-------hC-------CCCHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 99999999999885444443 22 11122222
Q ss_pred ------HHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 038190 284 ------SIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLIN 357 (531)
Q Consensus 284 ------~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~ 357 (531)
.+...+...|++++|.+.|++..+.. +-+...+..+...|.+.|++++|...++++.+.... +...+..+..
T Consensus 460 ~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~-~~~~~~a~al 537 (1157)
T PRK11447 460 QNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPN-DPEQVYAYGL 537 (1157)
T ss_pred hhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHH
Confidence 23344555667777777777666552 124455566666677777777777777776654322 3333334444
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCC----------------------cccHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 038190 358 SYSKIEKVEEALSLYGEMISMGVRPD----------------------NSCILEAAELFRTLHNTKFELDLTVFNCLVDG 415 (531)
Q Consensus 358 ~~~~~~~~~~a~~~~~~~~~~~~~~~----------------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 415 (531)
.+...++.++|+..++.+......+. .+..++|..+++ ..+.+...+..+...
T Consensus 538 ~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~-----~~p~~~~~~~~La~~ 612 (1157)
T PRK11447 538 YLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLR-----QQPPSTRIDLTLADW 612 (1157)
T ss_pred HHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHH-----hCCCCchHHHHHHHH
Confidence 45566667777666655432111110 334455555554 124466677889999
Q ss_pred HHcCCChHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-----------------HhhHHHHH
Q 038190 416 LCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK-----------------IRECLKAI 478 (531)
Q Consensus 416 ~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----------------i~~~~~a~ 478 (531)
+.+.|++++|+..|++..+.. +.+...+..++..|...|++++|++.++...+. .|++++|.
T Consensus 613 ~~~~g~~~~A~~~y~~al~~~-P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~ 691 (1157)
T PRK11447 613 AQQRGDYAAARAAYQRVLTRE-PGNADARLGLIEVDIAQGDLAAARAQLAKLPATANDSLNTQRRVALAWAALGDTAAAQ 691 (1157)
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHhCCCHHHHH
Confidence 999999999999999999852 335778889999999999999999999987754 28899999
Q ss_pred HHHHHHHHcCCC--C---CHHHHHHHHHHHhccCChhHHHhhHHHhh
Q 038190 479 ELLHKMAKRYVK--P---DEITVSILEELLNKDENCHECMNLLPSFL 520 (531)
Q Consensus 479 ~~~~~~~~~~~~--~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 520 (531)
+++++++..... | +...+..+.+.+...|++++|++.+++..
T Consensus 692 ~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al 738 (1157)
T PRK11447 692 RTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAM 738 (1157)
T ss_pred HHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 999999864322 2 22466677889999999999999988864
No 10
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.90 E-value=6.8e-19 Score=188.83 Aligned_cols=429 Identities=11% Similarity=-0.005 Sum_probs=307.8
Q ss_pred cCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCcchHHHH
Q 038190 65 EVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVA 144 (531)
Q Consensus 65 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~ 144 (531)
.|++++|.+.|+.+.+.++.................|++++|++.++++.+.. +-+...+..+...+...|+.++|+..
T Consensus 125 ~g~~~eA~~~~~~~l~~~p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~-P~~~~~~~~LA~ll~~~g~~~eAl~~ 203 (1157)
T PRK11447 125 TGRTEEALASYDKLFNGAPPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADY-PGNTGLRNTLALLLFSSGRRDEGFAV 203 (1157)
T ss_pred CCCHHHHHHHHHHHccCCCCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHccCCHHHHHHH
Confidence 46999999999999876543222111112222335699999999999999875 55677888899999999999999999
Q ss_pred HHHHHHCCCC--------------------------------CChhhH---------------------HHHHHHHHhcC
Q 038190 145 LGRILRKVFS--------------------------------PDVVTL---------------------GCLIRGLCMQG 171 (531)
Q Consensus 145 ~~~~~~~~~~--------------------------------~~~~~~---------------------~~li~~~~~~g 171 (531)
++++...... |+.... ......+...|
T Consensus 204 l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~~~G~~~~~~g 283 (1157)
T PRK11447 204 LEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRARAQGLAAVDSG 283 (1157)
T ss_pred HHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHCC
Confidence 9987653210 110000 01234566789
Q ss_pred ChHHHHHHHHHHHHcCCCCCCCCcHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCC-CHhhHHH------------HH
Q 038190 172 KFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYP-DAFVYNS------------LI 238 (531)
Q Consensus 172 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~------------li 238 (531)
++++|+..|++.... .|+ +..++..+..++.+.|++++|+..|++..+..... ....|.. ..
T Consensus 284 ~~~~A~~~l~~aL~~--~P~---~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g 358 (1157)
T PRK11447 284 QGGKAIPELQQAVRA--NPK---DSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQG 358 (1157)
T ss_pred CHHHHHHHHHHHHHh--CCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHH
Confidence 999999999999886 453 78899999999999999999999999988753221 1122221 23
Q ss_pred HHHHhcCChhhhhcchHHHHHHHHHHHhCCCCCCccccCCHhhHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 038190 239 RVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYS 318 (531)
Q Consensus 239 ~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 318 (531)
..+.+.|++++|.. .|++..... +.+...+..+...+...|++++|++.|+++.+... .+...+.
T Consensus 359 ~~~~~~g~~~eA~~-------~~~~Al~~~-------P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p-~~~~a~~ 423 (1157)
T PRK11447 359 DAALKANNLAQAER-------LYQQARQVD-------NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDP-GNTNAVR 423 (1157)
T ss_pred HHHHHCCCHHHHHH-------HHHHHHHhC-------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHH
Confidence 34566777777777 777766654 34566788889999999999999999999987631 1233332
Q ss_pred HH------------------------------------------HHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 038190 319 SL------------------------------------------IDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLI 356 (531)
Q Consensus 319 ~l------------------------------------------l~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li 356 (531)
.+ ...+...|++++|.+.|++..+..+. +...+..+.
T Consensus 424 ~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~-~~~~~~~LA 502 (1157)
T PRK11447 424 GLANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPG-SVWLTYRLA 502 (1157)
T ss_pred HHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHH
Confidence 22 23345678888888888888876543 566677788
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCC--------------cccHHHHHHHHHHHHhCCCCCCH---------HHHHHHH
Q 038190 357 NSYSKIEKVEEALSLYGEMISMGVRPD--------------NSCILEAAELFRTLHNTKFELDL---------TVFNCLV 413 (531)
Q Consensus 357 ~~~~~~~~~~~a~~~~~~~~~~~~~~~--------------~~~~~~a~~~~~~~~~~~~~~~~---------~~~~~l~ 413 (531)
..|.+.|++++|...++++.+.. |+ .+..++|+..++.+......++. ..+..+.
T Consensus 503 ~~~~~~G~~~~A~~~l~~al~~~--P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a 580 (1157)
T PRK11447 503 QDLRQAGQRSQADALMRRLAQQK--PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETA 580 (1157)
T ss_pred HHHHHcCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHH
Confidence 88888899999988888887632 33 34556666666655432222221 1233456
Q ss_pred HHHHcCCChHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-----------------HhhHHH
Q 038190 414 DGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK-----------------IRECLK 476 (531)
Q Consensus 414 ~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----------------i~~~~~ 476 (531)
..+...|+.++|..+++. .+.+...+..+...+.+.|++++|++.|+++.+. .|++++
T Consensus 581 ~~l~~~G~~~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~e 655 (1157)
T PRK11447 581 NRLRDSGKEAEAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAA 655 (1157)
T ss_pred HHHHHCCCHHHHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHH
Confidence 778889999999988872 2445667778888999999999999999998875 289999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChhHHHhhHHHhhhcc
Q 038190 477 AIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLLPSFLSRN 523 (531)
Q Consensus 477 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 523 (531)
|++.++...+.. +.+...+..+..++...|++++|.++++++....
T Consensus 656 A~~~l~~ll~~~-p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~ 701 (1157)
T PRK11447 656 ARAQLAKLPATA-NDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQA 701 (1157)
T ss_pred HHHHHHHHhccC-CCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhC
Confidence 999999887543 2345667778999999999999999999987654
No 11
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.90 E-value=6.2e-21 Score=182.64 Aligned_cols=299 Identities=11% Similarity=0.025 Sum_probs=245.6
Q ss_pred cCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC---HhhHHHHHHHHHccCCcchH
Q 038190 65 EVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPD---FVSLNILMNCFCKMIGVSDA 141 (531)
Q Consensus 65 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~---~~~~~~li~~~~~~g~~~~a 141 (531)
.|++++|...|.++.+.++. +..+|..+...+...|++++|..+++.+...+..++ ..++..+...|.+.|+++.|
T Consensus 48 ~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~~A 126 (389)
T PRK11788 48 NEQPDKAIDLFIEMLKVDPE-TVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLDRA 126 (389)
T ss_pred cCChHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHHHH
Confidence 46899999999999997664 677899999999999999999999999987642222 25678889999999999999
Q ss_pred HHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCCCcHHhHHHHHHHHHhcCChhHHHHHHHH
Q 038190 142 FVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLD 221 (531)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 221 (531)
..+|+++.+.. +.+..+++.++..+...|++++|++.++.+...+..+........+..+...+...|++++|...|++
T Consensus 127 ~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 205 (389)
T PRK11788 127 EELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKK 205 (389)
T ss_pred HHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 99999998864 34678999999999999999999999999987643221000123456788888999999999999999
Q ss_pred HhhCCCCCCHhhHHHHHHHHHhcCChhhhhcchHHHHHHHHHHHhCCCCCCccccCCHhhHHHHHHHHhcCCCHHHHHHH
Q 038190 222 MKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKEL 301 (531)
Q Consensus 222 m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~ 301 (531)
+.+.. +.+...+..+...+.+.|++++|.. .++.+...+ ......+++.++.+|...|++++|...
T Consensus 206 al~~~-p~~~~~~~~la~~~~~~g~~~~A~~-------~~~~~~~~~------p~~~~~~~~~l~~~~~~~g~~~~A~~~ 271 (389)
T PRK11788 206 ALAAD-PQCVRASILLGDLALAQGDYAAAIE-------ALERVEEQD------PEYLSEVLPKLMECYQALGDEAEGLEF 271 (389)
T ss_pred HHhHC-cCCHHHHHHHHHHHHHCCCHHHHHH-------HHHHHHHHC------hhhHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 98753 2245677788899999999999888 777776654 222245688899999999999999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHHhC
Q 038190 302 FLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSK---IEKVEEALSLYGEMISM 378 (531)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~---~~~~~~a~~~~~~~~~~ 378 (531)
++.+.+. .|+...+..+...+.+.|++++|..+++++.+. .|+...+..++..+.. .|+.++++.+++.|.+.
T Consensus 272 l~~~~~~--~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~ 347 (389)
T PRK11788 272 LRRALEE--YPGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGE 347 (389)
T ss_pred HHHHHHh--CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHH
Confidence 9999886 466667788999999999999999999998876 5888899888887764 56899999999999987
Q ss_pred CCCCC
Q 038190 379 GVRPD 383 (531)
Q Consensus 379 ~~~~~ 383 (531)
++.|+
T Consensus 348 ~~~~~ 352 (389)
T PRK11788 348 QLKRK 352 (389)
T ss_pred HHhCC
Confidence 77664
No 12
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.90 E-value=1.3e-20 Score=180.55 Aligned_cols=303 Identities=14% Similarity=0.018 Sum_probs=223.1
Q ss_pred HHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCcchHHHHHHHHHHCCCCCC---hhhHHHHHHHHHhc
Q 038190 94 LGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPD---VVTLGCLIRGLCMQ 170 (531)
Q Consensus 94 i~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~li~~~~~~ 170 (531)
...+...|++++|+..|.++.+.+ +.+..++..+...+...|+++.|..+++.+...+..++ ..++..++..|...
T Consensus 42 g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~ 120 (389)
T PRK11788 42 GLNFLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKA 120 (389)
T ss_pred HHHHHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHC
Confidence 344567789999999999998875 44566888888899999999999999998887532221 24677888889999
Q ss_pred CChHHHHHHHHHHHHcCCCCCCCCcHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCH----hhHHHHHHHHHhcCC
Q 038190 171 GKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDA----FVYNSLIRVYCCAVN 246 (531)
Q Consensus 171 g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~----~~~~~li~~~~~~~~ 246 (531)
|++++|+.+|+++... .| .+..+++.++..+...|++++|.+.++.+.+.+..+.. ..+..+...+...|+
T Consensus 121 g~~~~A~~~~~~~l~~--~~---~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~ 195 (389)
T PRK11788 121 GLLDRAEELFLQLVDE--GD---FAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGD 195 (389)
T ss_pred CCHHHHHHHHHHHHcC--Cc---chHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCC
Confidence 9999999999998864 23 36778889999999999999999999998876433221 234455666777777
Q ss_pred hhhhhcchHHHHHHHHHHHhCCCCCCccccCCHhhHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 038190 247 WEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCL 326 (531)
Q Consensus 247 ~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 326 (531)
+++|.. .++++.+.. +.+...+..+...+.+.|++++|.++++++.+.+......++..++.+|..
T Consensus 196 ~~~A~~-------~~~~al~~~-------p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~ 261 (389)
T PRK11788 196 LDAARA-------LLKKALAAD-------PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQA 261 (389)
T ss_pred HHHHHH-------HHHHHHhHC-------cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHH
Confidence 777777 665555433 234556777778888888888888888888765322224567777888888
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHhCCCCCCH
Q 038190 327 MGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDL 406 (531)
Q Consensus 327 ~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 406 (531)
.|++++|...++++.+.. |+...+..++..+.+.|++++|..+++++.+. .|+.
T Consensus 262 ~g~~~~A~~~l~~~~~~~--p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~------------------------~P~~ 315 (389)
T PRK11788 262 LGDEAEGLEFLRRALEEY--PGADLLLALAQLLEEQEGPEAAQALLREQLRR------------------------HPSL 315 (389)
T ss_pred cCCHHHHHHHHHHHHHhC--CCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh------------------------CcCH
Confidence 888888888888887763 45556677788888888888888888877663 2366
Q ss_pred HHHHHHHHHHHc---CCChHHHHHHHHHhhhCCCCCcHH
Q 038190 407 TVFNCLVDGLCK---SWRLRSAWELFKKLPRYGPEPNVV 442 (531)
Q Consensus 407 ~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~g~~p~~~ 442 (531)
..+..++..+.. .|+.+++..++++|.+.++.|++.
T Consensus 316 ~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 316 RGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred HHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCC
Confidence 677777766664 457888888888888766666654
No 13
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.89 E-value=8.4e-19 Score=175.93 Aligned_cols=323 Identities=8% Similarity=-0.045 Sum_probs=210.0
Q ss_pred cCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCcchHHHH
Q 038190 65 EVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVA 144 (531)
Q Consensus 65 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~ 144 (531)
.|++++|+.+++.+....+.+ ...+..++.++...|+++.|+..++++.+.. +.+...+..+...+...|+++.|...
T Consensus 55 ~g~~~~A~~l~~~~l~~~p~~-~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~-P~~~~a~~~la~~l~~~g~~~~Ai~~ 132 (656)
T PRK15174 55 KDETDVGLTLLSDRVLTAKNG-RDLLRRWVISPLASSQPDAVLQVVNKLLAVN-VCQPEDVLLVASVLLKSKQYATVADL 132 (656)
T ss_pred cCCcchhHHHhHHHHHhCCCc-hhHHHHHhhhHhhcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHH
Confidence 347777777777777766663 4444555556666777888888887777664 44556677777777777788888877
Q ss_pred HHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCCCcHHhHHHHHHHHHhcCChhHHHHHHHHHhh
Q 038190 145 LGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKG 224 (531)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 224 (531)
++++.+..+ .+...+..+..++...|++++|...++.+... .|+ +...+..+ ..+...|++++|...++.+..
T Consensus 133 l~~Al~l~P-~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~--~P~---~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~ 205 (656)
T PRK15174 133 AEQAWLAFS-GNSQIFALHLRTLVLMDKELQAISLARTQAQE--VPP---RGDMIATC-LSFLNKSRLPEDHDLARALLP 205 (656)
T ss_pred HHHHHHhCC-CcHHHHHHHHHHHHHCCChHHHHHHHHHHHHh--CCC---CHHHHHHH-HHHHHcCCHHHHHHHHHHHHh
Confidence 777776632 25566777777777778888777777776654 221 23333333 236677777778777777765
Q ss_pred CCCCCCHhhHHHHHHHHHhcCChhhhhcchHHHHHHHHHHHhCCCCCCccccCCHhhHHHHHHHHhcCCCHHH----HHH
Q 038190 225 RGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDK----AKE 300 (531)
Q Consensus 225 ~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~----a~~ 300 (531)
....++...+..+..++...|++++|.. .++...... +.+...+..+...+...|++++ |..
T Consensus 206 ~~~~~~~~~~~~l~~~l~~~g~~~eA~~-------~~~~al~~~-------p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~ 271 (656)
T PRK15174 206 FFALERQESAGLAVDTLCAVGKYQEAIQ-------TGESALARG-------LDGAALRRSLGLAYYQSGRSREAKLQAAE 271 (656)
T ss_pred cCCCcchhHHHHHHHHHHHCCCHHHHHH-------HHHHHHhcC-------CCCHHHHHHHHHHHHHcCCchhhHHHHHH
Confidence 5332334444445566667777777766 555554433 2345566667777777777764 677
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 038190 301 LFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGV 380 (531)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~ 380 (531)
.|+...+.. +.+...+..+...+.+.|++++|...+++..+..+. +...+..+..+|.+.|++++|...|+.+.+.+
T Consensus 272 ~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~-~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~- 348 (656)
T PRK15174 272 HWRHALQFN-SDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPD-LPYVRAMYARALRQVGQYTAASDEFVQLAREK- 348 (656)
T ss_pred HHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-
Confidence 777776653 224566777777777777777777777777765433 44556666777777777777777777776532
Q ss_pred CCCcccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHhhhC
Q 038190 381 RPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRY 435 (531)
Q Consensus 381 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 435 (531)
|+ +...+..+..++...|+.++|...|++..+.
T Consensus 349 -P~---------------------~~~~~~~~a~al~~~G~~deA~~~l~~al~~ 381 (656)
T PRK15174 349 -GV---------------------TSKWNRYAAAALLQAGKTSEAESVFEHYIQA 381 (656)
T ss_pred -cc---------------------chHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 21 2233444566677777777777777777663
No 14
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.89 E-value=3.1e-18 Score=171.92 Aligned_cols=370 Identities=11% Similarity=-0.021 Sum_probs=288.2
Q ss_pred CHHHHHHHHHHHHHcC--CCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCcchHHHH
Q 038190 67 ELNDALCFFNYMIHMQ--PTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVA 144 (531)
Q Consensus 67 ~~~~A~~~~~~~~~~~--~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~ 144 (531)
+++.-.-.|+...+.. ..-+..-...++..+.+.|++++|+.+++...... +-+...+..++.++...|+++.|...
T Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~-p~~~~~l~~l~~~~l~~g~~~~A~~~ 98 (656)
T PRK15174 20 DWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTA-KNGRDLLRRWVISPLASSQPDAVLQV 98 (656)
T ss_pred chhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhC-CCchhHHHHHhhhHhhcCCHHHHHHH
Confidence 5555555555544321 11233445567778889999999999999998875 44556677777888889999999999
Q ss_pred HHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCCCcHHhHHHHHHHHHhcCChhHHHHHHHHHhh
Q 038190 145 LGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKG 224 (531)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 224 (531)
++++....+. +...+..+...+...|++++|+..+++.... .|+ +...+..+...+...|++++|...++.+..
T Consensus 99 l~~~l~~~P~-~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l--~P~---~~~a~~~la~~l~~~g~~~eA~~~~~~~~~ 172 (656)
T PRK15174 99 VNKLLAVNVC-QPEDVLLVASVLLKSKQYATVADLAEQAWLA--FSG---NSQIFALHLRTLVLMDKELQAISLARTQAQ 172 (656)
T ss_pred HHHHHHhCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCC---cHHHHHHHHHHHHHCCChHHHHHHHHHHHH
Confidence 9999988543 6678888999999999999999999999986 453 678899999999999999999999998876
Q ss_pred CCCCCCHhhHHHHHHHHHhcCChhhhhcchHHHHHHHHHHHhCCCCCCccccCCHhhHHHHHHHHhcCCCHHHHHHHHHH
Q 038190 225 RGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLD 304 (531)
Q Consensus 225 ~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 304 (531)
.... +...+..+ ..+...|++++|.. .++.+.... ..++...+..+..++...|++++|...++.
T Consensus 173 ~~P~-~~~a~~~~-~~l~~~g~~~eA~~-------~~~~~l~~~------~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~ 237 (656)
T PRK15174 173 EVPP-RGDMIATC-LSFLNKSRLPEDHD-------LARALLPFF------ALERQESAGLAVDTLCAVGKYQEAIQTGES 237 (656)
T ss_pred hCCC-CHHHHHHH-HHHHHcCCHHHHHH-------HHHHHHhcC------CCcchhHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 5333 23333333 34777888888887 777776654 233444555667888999999999999999
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcCCHHH----HHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 038190 305 MKSRGIIPDVVVYSSLIDGYCLMGRIDD----ARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGV 380 (531)
Q Consensus 305 ~~~~~~~~~~~~~~~ll~~~~~~g~~~~----a~~~~~~~~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~ 380 (531)
+.+.. +.+...+..+...|...|++++ |...|++..+..+. +...+..+...+.+.|++++|...+++..+.
T Consensus 238 al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l-- 313 (656)
T PRK15174 238 ALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSD-NVRIVTLYADALIRTGQNEKAIPLLQQSLAT-- 313 (656)
T ss_pred HHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--
Confidence 99874 3367788889999999999986 89999999987543 6778899999999999999999999998874
Q ss_pred CCCcccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHhhhCCCCCcHH-HHHHHHHHHHHcCCHHH
Q 038190 381 RPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVV-TYTVMICGLCIEGGIEK 459 (531)
Q Consensus 381 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~g~~~~ 459 (531)
.|+ +...+..+..+|...|++++|...|+++.+. .|+.. .+..+..++...|++++
T Consensus 314 ~P~---------------------~~~a~~~La~~l~~~G~~~eA~~~l~~al~~--~P~~~~~~~~~a~al~~~G~~de 370 (656)
T PRK15174 314 HPD---------------------LPYVRAMYARALRQVGQYTAASDEFVQLARE--KGVTSKWNRYAAAALLQAGKTSE 370 (656)
T ss_pred CCC---------------------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHCCCHHH
Confidence 343 6778888999999999999999999999875 45543 34445678899999999
Q ss_pred HHHHHHHHHHH-----HhhHHHHHHHHHHHH
Q 038190 460 AYDLLPDMEEK-----IRECLKAIELLHKMA 485 (531)
Q Consensus 460 A~~~~~~~~~~-----i~~~~~a~~~~~~~~ 485 (531)
|++.|++..+. -..+++|...+....
T Consensus 371 A~~~l~~al~~~P~~~~~~~~ea~~~~~~~~ 401 (656)
T PRK15174 371 AESVFEHYIQARASHLPQSFEEGLLALDGQI 401 (656)
T ss_pred HHHHHHHHHHhChhhchhhHHHHHHHHHHHH
Confidence 99999998776 244555555555554
No 15
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.89 E-value=5.2e-18 Score=170.95 Aligned_cols=390 Identities=14% Similarity=0.029 Sum_probs=237.7
Q ss_pred CcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCcchHHH
Q 038190 64 GEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFV 143 (531)
Q Consensus 64 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~ 143 (531)
..|+++.|+..|++.++. .|+...|..+..+|.+.|++++|++.++..++.. +.+..+|..+..++...|++++|..
T Consensus 139 ~~~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~~lg~~~eA~~ 215 (615)
T TIGR00990 139 RNKDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYDGLGKYADALL 215 (615)
T ss_pred HcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 346888888888888774 3456677777888888888888888888887764 4456677788888888888888887
Q ss_pred HHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCCCcHH--------------------------
Q 038190 144 ALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVI-------------------------- 197 (531)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~-------------------------- 197 (531)
.|..+...+...+... ..++..+.. ..+.......... .|...|...
T Consensus 216 ~~~~~~~~~~~~~~~~-~~~~~~~l~----~~a~~~~~~~l~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (615)
T TIGR00990 216 DLTASCIIDGFRNEQS-AQAVERLLK----KFAESKAKEILET--KPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDE 288 (615)
T ss_pred HHHHHHHhCCCccHHH-HHHHHHHHH----HHHHHHHHHHHhc--CCCCCCCHHHHHHHHHHccCCcchhhhhccccccc
Confidence 7766554422212111 111111111 1111111111111 110000000
Q ss_pred ----hHHHHHHH---HHhcCChhHHHHHHHHHhhCC-CCC-CHhhHHHHHHHHHhcCChhhhhcchHHHHHHHHHHHhCC
Q 038190 198 ----CYASIIDG---LCKDGFVNKVRVLFLDMKGRG-IYP-DAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGN 268 (531)
Q Consensus 198 ----~~~~l~~~---~~~~~~~~~a~~~~~~m~~~g-~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~ 268 (531)
.+..+... ....+++++|.+.|+...+.+ ..| ....|..+...+...|++++|.. .++......
T Consensus 289 ~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~-------~~~kal~l~ 361 (615)
T TIGR00990 289 ETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALA-------DLSKSIELD 361 (615)
T ss_pred ccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHH-------HHHHHHHcC
Confidence 00001000 012356777888887777653 222 34456666666777777777777 444444433
Q ss_pred CCCCccccCCHhhHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC
Q 038190 269 GELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPD 348 (531)
Q Consensus 269 ~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~ 348 (531)
+.....|..+...+...|++++|...|+++.+.. +.+..++..+...+...|++++|...|++..+.... +
T Consensus 362 -------P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~-~ 432 (615)
T TIGR00990 362 -------PRVTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPD-F 432 (615)
T ss_pred -------CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCcc-C
Confidence 2234567777777778888888888888777653 235667777777778888888888888887776432 4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHH
Q 038190 349 TSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWEL 428 (531)
Q Consensus 349 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 428 (531)
...+..+...+.+.|++++|+..|++..+. .|+ +...|+.+..++...|++++|.+.
T Consensus 433 ~~~~~~la~~~~~~g~~~eA~~~~~~al~~--~P~---------------------~~~~~~~lg~~~~~~g~~~~A~~~ 489 (615)
T TIGR00990 433 IFSHIQLGVTQYKEGSIASSMATFRRCKKN--FPE---------------------APDVYNYYGELLLDQNKFDEAIEK 489 (615)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCC---------------------ChHHHHHHHHHHHHccCHHHHHHH
Confidence 556666777777888888888888777653 232 567778888888888888888888
Q ss_pred HHHhhhCCCCCcH-HH-------HHHHHHHHHHcCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 038190 429 FKKLPRYGPEPNV-VT-------YTVMICGLCIEGGIEKAYDLLPDMEEKIRECLKAIELLHKMAKRYVKPDEITVSILE 500 (531)
Q Consensus 429 ~~~~~~~g~~p~~-~~-------~~~l~~~~~~~g~~~~A~~~~~~~~~~i~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 500 (531)
|++..+. .|+. .. ++..+..+...|++++| ..++++.++.. +.+...+..++
T Consensus 490 ~~~Al~l--~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA-----------------~~~~~kAl~l~-p~~~~a~~~la 549 (615)
T TIGR00990 490 FDTAIEL--EKETKPMYMNVLPLINKALALFQWKQDFIEA-----------------ENLCEKALIID-PECDIAVATMA 549 (615)
T ss_pred HHHHHhc--CCccccccccHHHHHHHHHHHHHHhhhHHHH-----------------HHHHHHHHhcC-CCcHHHHHHHH
Confidence 8887763 2221 11 11111122224555555 44445554433 22345788899
Q ss_pred HHHhccCChhHHHhhHHHhhhc
Q 038190 501 ELLNKDENCHECMNLLPSFLSR 522 (531)
Q Consensus 501 ~~~~~~g~~~~a~~~~~~~~~~ 522 (531)
.++.+.|++++|..++++....
T Consensus 550 ~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 550 QLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred HHHHHccCHHHHHHHHHHHHHH
Confidence 9999999999999999886544
No 16
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.89 E-value=6.1e-20 Score=167.87 Aligned_cols=347 Identities=16% Similarity=0.153 Sum_probs=157.9
Q ss_pred CHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHh-hHHHHHHHHHccCCcchHHHHH
Q 038190 67 ELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFV-SLNILMNCFCKMIGVSDAFVAL 145 (531)
Q Consensus 67 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~-~~~~li~~~~~~g~~~~a~~~~ 145 (531)
++.+|+.+++.+++..++ ....|-.+..++...|+.+.|.+.|.+.++.+ |+.. ....+...+-..|++++|...|
T Consensus 131 ~~~~al~~y~~aiel~p~-fida~inla~al~~~~~~~~a~~~~~~alqln--P~l~ca~s~lgnLlka~Grl~ea~~cY 207 (966)
T KOG4626|consen 131 QLQDALALYRAAIELKPK-FIDAYINLAAALVTQGDLELAVQCFFEALQLN--PDLYCARSDLGNLLKAEGRLEEAKACY 207 (966)
T ss_pred hHHHHHHHHHHHHhcCch-hhHHHhhHHHHHHhcCCCcccHHHHHHHHhcC--cchhhhhcchhHHHHhhcccchhHHHH
Confidence 444444444444443333 34444444444444444444444444444332 2222 1222222333334444444444
Q ss_pred HHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCCCcHHhHHHHHHHHHhcCChhHHHHHHHHHhhC
Q 038190 146 GRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGR 225 (531)
Q Consensus 146 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 225 (531)
.+.++..+. =..+|..|...+-..|+.-.|+..|++.... +|. -..+|-.|...|...+.+++|...|.+....
T Consensus 208 lkAi~~qp~-fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--dP~---f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~l 281 (966)
T KOG4626|consen 208 LKAIETQPC-FAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--DPN---FLDAYINLGNVYKEARIFDRAVSCYLRALNL 281 (966)
T ss_pred HHHHhhCCc-eeeeehhcchHHhhcchHHHHHHHHHHhhcC--CCc---chHHHhhHHHHHHHHhcchHHHHHHHHHHhc
Confidence 444443211 1234444444444445555555544444443 221 2334444444444444555554444444332
Q ss_pred CCCC-CHhhHHHHHHHHHhcCChhhhhcchHHHHHHHHHHHhCCCCCCccccCC-HhhHHHHHHHHhcCCCHHHHHHHHH
Q 038190 226 GIYP-DAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPD-VLSYCSIINSLCKDVLVDKAKELFL 303 (531)
Q Consensus 226 g~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~ 303 (531)
.| ....+..+...|...|..+.|+..|++|++ . .|+ ..+|+.|..++-..|+..+|.+.|.
T Consensus 282 --rpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~-------~--------~P~F~~Ay~NlanALkd~G~V~ea~~cYn 344 (966)
T KOG4626|consen 282 --RPNHAVAHGNLACIYYEQGLLDLAIDTYKRALE-------L--------QPNFPDAYNNLANALKDKGSVTEAVDCYN 344 (966)
T ss_pred --CCcchhhccceEEEEeccccHHHHHHHHHHHHh-------c--------CCCchHHHhHHHHHHHhccchHHHHHHHH
Confidence 12 223333334444444444444443332222 1 122 2345555555555555555555555
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 038190 304 DMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD 383 (531)
Q Consensus 304 ~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~ 383 (531)
+..... .-.....+.|...|...|.++.|..+|....+-... -...++.|...|-+.|+.++|+..|++..+ +.|+
T Consensus 345 kaL~l~-p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~-~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr--I~P~ 420 (966)
T KOG4626|consen 345 KALRLC-PNHADAMNNLGNIYREQGKIEEATRLYLKALEVFPE-FAAAHNNLASIYKQQGNLDDAIMCYKEALR--IKPT 420 (966)
T ss_pred HHHHhC-CccHHHHHHHHHHHHHhccchHHHHHHHHHHhhChh-hhhhhhhHHHHHHhcccHHHHHHHHHHHHh--cCch
Confidence 544431 112334444555555555555555555544443111 123344445555555555555555554443 2221
Q ss_pred cccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHhhhCCCCCc-HHHHHHHHHHHHHcCCHHHHHH
Q 038190 384 NSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPN-VVTYTVMICGLCIEGGIEKAYD 462 (531)
Q Consensus 384 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~ 462 (531)
-...|+.+...|-..|+++.|.+.+.+.+.. .|. ...++.|...|-.+|+..+|+.
T Consensus 421 ---------------------fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~--nPt~AeAhsNLasi~kDsGni~~AI~ 477 (966)
T KOG4626|consen 421 ---------------------FADALSNMGNTYKEMGDVSAAIQCYTRAIQI--NPTFAEAHSNLASIYKDSGNIPEAIQ 477 (966)
T ss_pred ---------------------HHHHHHhcchHHHHhhhHHHHHHHHHHHHhc--CcHHHHHHhhHHHHhhccCCcHHHHH
Confidence 2345666666666666666666666666652 343 3455566666666666666655
Q ss_pred HHHH
Q 038190 463 LLPD 466 (531)
Q Consensus 463 ~~~~ 466 (531)
-|++
T Consensus 478 sY~~ 481 (966)
T KOG4626|consen 478 SYRT 481 (966)
T ss_pred HHHH
Confidence 4443
No 17
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.89 E-value=1.3e-19 Score=165.72 Aligned_cols=330 Identities=16% Similarity=0.105 Sum_probs=159.1
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCcchHHHHHHHHHHCCCCCChh-hHHHHHHHH
Q 038190 89 SFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVV-TLGCLIRGL 167 (531)
Q Consensus 89 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~li~~~ 167 (531)
+|..+.+.+-..|++++|+.+++.+++.. +-....|..+..++...|+.+.|.+.|.+.++. .|+.. ....+...+
T Consensus 118 ~ysn~aN~~kerg~~~~al~~y~~aiel~-p~fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~lgnLl 194 (966)
T KOG4626|consen 118 AYSNLANILKERGQLQDALALYRAAIELK-PKFIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDLGNLL 194 (966)
T ss_pred HHHHHHHHHHHhchHHHHHHHHHHHHhcC-chhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--CcchhhhhcchhHHH
Confidence 34444444555555555555555555442 223445555555555555555555555555544 22222 122233333
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCCCCCcHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCh
Q 038190 168 CMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNW 247 (531)
Q Consensus 168 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~ 247 (531)
...|++.+|...+.+.++. .|. -..+|+.|...+...|+...|+..|++.... .|+ .+.+|...|++
T Consensus 195 ka~Grl~ea~~cYlkAi~~--qp~---fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--dP~------f~dAYiNLGnV 261 (966)
T KOG4626|consen 195 KAEGRLEEAKACYLKAIET--QPC---FAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--DPN------FLDAYINLGNV 261 (966)
T ss_pred HhhcccchhHHHHHHHHhh--CCc---eeeeehhcchHHhhcchHHHHHHHHHHhhcC--CCc------chHHHhhHHHH
Confidence 3445555555555444443 221 2334555555555555555555555555442 222 12222223332
Q ss_pred hhhhcchHHHHHHHHHHHhCCCCCCccccCCHhhHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHh
Q 038190 248 EDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPD-VVVYSSLIDGYCL 326 (531)
Q Consensus 248 ~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~ll~~~~~ 326 (531)
-+....+++|+.-+....... +-....+..+...|-..|..+.|+..|++..+. .|+ ...|+.|..++-.
T Consensus 262 ~ke~~~~d~Avs~Y~rAl~lr-------pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~--~P~F~~Ay~NlanALkd 332 (966)
T KOG4626|consen 262 YKEARIFDRAVSCYLRALNLR-------PNHAVAHGNLACIYYEQGLLDLAIDTYKRALEL--QPNFPDAYNNLANALKD 332 (966)
T ss_pred HHHHhcchHHHHHHHHHHhcC-------CcchhhccceEEEEeccccHHHHHHHHHHHHhc--CCCchHHHhHHHHHHHh
Confidence 223333333333444444332 123344444555555555555555555555543 222 3445555555555
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHhCCCCCCH
Q 038190 327 MGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDL 406 (531)
Q Consensus 327 ~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 406 (531)
.|++.+|.+.|.+.+..... .....+.|...|...|.+++|..+|....+ +.|. -.
T Consensus 333 ~G~V~ea~~cYnkaL~l~p~-hadam~NLgni~~E~~~~e~A~~ly~~al~--v~p~---------------------~a 388 (966)
T KOG4626|consen 333 KGSVTEAVDCYNKALRLCPN-HADAMNNLGNIYREQGKIEEATRLYLKALE--VFPE---------------------FA 388 (966)
T ss_pred ccchHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhccchHHHHHHHHHHh--hChh---------------------hh
Confidence 55555555555555544222 334444555555555555555555555443 1111 22
Q ss_pred HHHHHHHHHHHcCCChHHHHHHHHHhhhCCCCCc-HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 038190 407 TVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPN-VVTYTVMICGLCIEGGIEKAYDLLPDMEE 469 (531)
Q Consensus 407 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 469 (531)
...+.|...|-+.|++++|+..|++.++ +.|+ ...|+.+...|-..|+.+.|++.+.+.+.
T Consensus 389 aa~nNLa~i~kqqgnl~~Ai~~Ykealr--I~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~ 450 (966)
T KOG4626|consen 389 AAHNNLASIYKQQGNLDDAIMCYKEALR--IKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQ 450 (966)
T ss_pred hhhhhHHHHHHhcccHHHHHHHHHHHHh--cCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHh
Confidence 3456666666666666666666666665 4555 34566666666666666666665555544
No 18
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.88 E-value=5.9e-18 Score=173.60 Aligned_cols=413 Identities=13% Similarity=0.032 Sum_probs=295.7
Q ss_pred CCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCcchHHHHH
Q 038190 66 VELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVAL 145 (531)
Q Consensus 66 g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~ 145 (531)
|+.++|+.++.......+. +...+..+..++...|++++|..+|++.++.. +.+...+..+..++...|++++|...+
T Consensus 29 g~~~~A~~~~~~~~~~~~~-~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~l~~~g~~~eA~~~l 106 (765)
T PRK10049 29 GQDAEVITVYNRYRVHMQL-PARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLILTLADAGQYDEALVKA 106 (765)
T ss_pred CCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 4899999999999763333 55578999999999999999999999998774 556777888889999999999999999
Q ss_pred HHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCCCcHHhHHHHHHHHHhcCChhHHHHHHHHHhhC
Q 038190 146 GRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGR 225 (531)
Q Consensus 146 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 225 (531)
+++++..+. +.. +..+..++...|+.++|+..++++... .|+ +...+..+..++...+..+.|+..++....
T Consensus 107 ~~~l~~~P~-~~~-~~~la~~l~~~g~~~~Al~~l~~al~~--~P~---~~~~~~~la~~l~~~~~~e~Al~~l~~~~~- 178 (765)
T PRK10049 107 KQLVSGAPD-KAN-LLALAYVYKRAGRHWDELRAMTQALPR--APQ---TQQYPTEYVQALRNNRLSAPALGAIDDANL- 178 (765)
T ss_pred HHHHHhCCC-CHH-HHHHHHHHHHCCCHHHHHHHHHHHHHh--CCC---CHHHHHHHHHHHHHCCChHHHHHHHHhCCC-
Confidence 999988433 555 888899999999999999999999986 453 666777788888899999999999987664
Q ss_pred CCCCCH------hhHHHHHHHHHhcCChhh-hhcchHHHHHHHHHHHhCCCCCCccccCCHh-hH----HHHHHHHhcCC
Q 038190 226 GIYPDA------FVYNSLIRVYCCAVNWED-AKGNTSAALELHEEFVNGNGELGVICHPDVL-SY----CSIINSLCKDV 293 (531)
Q Consensus 226 g~~p~~------~~~~~li~~~~~~~~~~~-a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~-~~----~~ll~~~~~~~ 293 (531)
.|+. .....++......+..+. -....++|++.++.+..... ..|+.. .+ ...+..+...|
T Consensus 179 --~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~-----~~p~~~~~~~~a~~d~l~~Ll~~g 251 (765)
T PRK10049 179 --TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWH-----DNPDATADYQRARIDRLGALLARD 251 (765)
T ss_pred --CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcc-----cCCccchHHHHHHHHHHHHHHHhh
Confidence 2331 011222222221111110 00112556667777775421 122221 11 11134556779
Q ss_pred CHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC---CHHHHHHHHHHHHhcCCHHHHH
Q 038190 294 LVDKAKELFLDMKSRGII-PDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIP---DTSSYNTLINSYSKIEKVEEAL 369 (531)
Q Consensus 294 ~~~~a~~~~~~~~~~~~~-~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p---~~~~~~~li~~~~~~~~~~~a~ 369 (531)
++++|...|+.+.+.+.. |+. ....+..+|...|++++|...|+++.+..... .......+..++...|++++|.
T Consensus 252 ~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~ 330 (765)
T PRK10049 252 RYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGAL 330 (765)
T ss_pred hHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHH
Confidence 999999999999987532 332 22335678999999999999999988754221 1345666777889999999999
Q ss_pred HHHHHHHhCCCCCCcccHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHcCCChHHHHHHHHHhhhCCCCCcHHHHHH
Q 038190 370 SLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELD---LTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTV 446 (531)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ 446 (531)
.+++.+.+.. |... .++. .....|+ ...+..+...+...|++++|+++++++.... +-+...+..
T Consensus 331 ~~l~~~~~~~--P~~~------~~~~---~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~-P~n~~l~~~ 398 (765)
T PRK10049 331 TVTAHTINNS--PPFL------RLYG---SPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNA-PGNQGLRID 398 (765)
T ss_pred HHHHHHhhcC--CceE------eecC---CCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHH
Confidence 9999988642 1100 0000 0001223 2356678888999999999999999998752 345778888
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhccCChhHHHhhHHHhhhcchh
Q 038190 447 MICGLCIEGGIEKAYDLLPDMEEKIRECLKAIELLHKMAKRYVKPD-EITVSILEELLNKDENCHECMNLLPSFLSRNQE 525 (531)
Q Consensus 447 l~~~~~~~g~~~~A~~~~~~~~~~i~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 525 (531)
+...+...|++++|++.+++.... .|+ ...+...+..+.+.|++++|..+++++....+.
T Consensus 399 lA~l~~~~g~~~~A~~~l~~al~l-------------------~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd 459 (765)
T PRK10049 399 YASVLQARGWPRAAENELKKAEVL-------------------EPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQ 459 (765)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHhh-------------------CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC
Confidence 999999999999998887765542 344 567777888888999999999999988776655
Q ss_pred hh
Q 038190 526 ES 527 (531)
Q Consensus 526 ~~ 527 (531)
..
T Consensus 460 ~~ 461 (765)
T PRK10049 460 DP 461 (765)
T ss_pred CH
Confidence 43
No 19
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.86 E-value=9.1e-17 Score=161.65 Aligned_cols=419 Identities=13% Similarity=-0.004 Sum_probs=296.2
Q ss_pred CcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCcchHHH
Q 038190 64 GEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFV 143 (531)
Q Consensus 64 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~ 143 (531)
+.|+++.|+..|++..+..|.-....+ .++..+...|+.++|+..+++..... .........+...+...|+++.|.+
T Consensus 46 r~Gd~~~Al~~L~qaL~~~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p~-n~~~~~llalA~ly~~~gdyd~Aie 123 (822)
T PRK14574 46 RAGDTAPVLDYLQEESKAGPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSSM-NISSRGLASAARAYRNEKRWDQALA 123 (822)
T ss_pred hCCCHHHHHHHHHHHHhhCccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccCC-CCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 467999999999999987665222344 78888888999999999999998211 2223333444668888899999999
Q ss_pred HHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCCCcHHhHHHHHHHHHhcCChhHHHHHHHHHh
Q 038190 144 ALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMK 223 (531)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 223 (531)
+|+++++..+. +...+..++..+...++.++|++.++++... .| +...+..++..+...++..+|++.++++.
T Consensus 124 ly~kaL~~dP~-n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp----~~~~~l~layL~~~~~~~~~AL~~~ekll 196 (822)
T PRK14574 124 LWQSSLKKDPT-NPDLISGMIMTQADAGRGGVVLKQATELAER--DP----TVQNYMTLSYLNRATDRNYDALQASSEAV 196 (822)
T ss_pred HHHHHHhhCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--Cc----chHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence 99999998655 5677778889999999999999999999875 33 44455445455545666666999999999
Q ss_pred hCCCCCCHhhHHHHHHHHHhcCChhhhhc-----------------------------------------chHHHHHHHH
Q 038190 224 GRGIYPDAFVYNSLIRVYCCAVNWEDAKG-----------------------------------------NTSAALELHE 262 (531)
Q Consensus 224 ~~g~~p~~~~~~~li~~~~~~~~~~~a~~-----------------------------------------~~~~a~~~~~ 262 (531)
+.. +-+...+..++.++.+.|-...|.+ ..+.|+.-++
T Consensus 197 ~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~ 275 (822)
T PRK14574 197 RLA-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQ 275 (822)
T ss_pred HhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHH
Confidence 863 2245555666666665555444433 2334555555
Q ss_pred HHHhCCCCCCccccCC----HhhHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 038190 263 EFVNGNGELGVICHPD----VLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFV 338 (531)
Q Consensus 263 ~~~~~~~~~~~~~~~~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~ 338 (531)
.+...-+. .++. .....-.+-++...|++.++++.|+.+...+.+....+-..+..+|...+++++|..+|.
T Consensus 276 ~l~~~~~~----~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~ 351 (822)
T PRK14574 276 NLLTRWGK----DPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILS 351 (822)
T ss_pred HHHhhccC----CCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHH
Confidence 55542210 1111 122334566788899999999999999998877667788999999999999999999999
Q ss_pred HHHhcCC-----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHhCCCCCCHH-HHHHH
Q 038190 339 SIESEGC-----IPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLT-VFNCL 412 (531)
Q Consensus 339 ~~~~~g~-----~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l 412 (531)
.+..... .++......|..+|...+++++|..+++.+.+.. |... ..+. -......||-. .+..+
T Consensus 352 ~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~--p~~~------~~~~-~~~~~pn~d~~~~~~l~ 422 (822)
T PRK14574 352 SLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQT--PYQV------GVYG-LPGKEPNDDWIEGQTLL 422 (822)
T ss_pred HHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcC--CcEE------eccC-CCCCCCCccHHHHHHHH
Confidence 9876531 2233445788999999999999999999998732 2100 0000 00011233333 34556
Q ss_pred HHHHHcCCChHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCC
Q 038190 413 VDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECLKAIELLHKMAKRYVKPD 492 (531)
Q Consensus 413 ~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~i~~~~~a~~~~~~~~~~~~~~~ 492 (531)
+..+...|+..+|++.++.+.... +-|......+...+...|.+.+|++.++.... ..|+
T Consensus 423 a~~~~~~gdl~~Ae~~le~l~~~a-P~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~-------------------l~P~ 482 (822)
T PRK14574 423 VQSLVALNDLPTAQKKLEDLSSTA-PANQNLRIALASIYLARDLPRKAEQELKAVES-------------------LAPR 482 (822)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhh-------------------hCCc
Confidence 777889999999999999998752 44788888999999999999999887754432 2333
Q ss_pred -HHHHHHHHHHHhccCChhHHHhhHHHhhhcchh
Q 038190 493 -EITVSILEELLNKDENCHECMNLLPSFLSRNQE 525 (531)
Q Consensus 493 -~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 525 (531)
..+....+.++...|++.+|..+++++....+.
T Consensus 483 ~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~Pe 516 (822)
T PRK14574 483 SLILERAQAETAMALQEWHQMELLTDDVISRSPE 516 (822)
T ss_pred cHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhCCC
Confidence 456667777777888888887777666554443
No 20
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.84 E-value=5.4e-16 Score=159.40 Aligned_cols=421 Identities=11% Similarity=0.032 Sum_probs=261.8
Q ss_pred cCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCcchHHHH
Q 038190 65 EVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVA 144 (531)
Q Consensus 65 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~ 144 (531)
.|++++|+..|+.+.+..|. +..++..+...|.+.|++++|+..+++..+.. |+...|..++..+ +++++|..+
T Consensus 57 ~Gd~~~A~~~l~~Al~~dP~-n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ld--P~n~~~~~~La~i---~~~~kA~~~ 130 (987)
T PRK09782 57 NNDEATAIREFEYIHQQVPD-NIPLTLYLAEAYRHFGHDDRARLLLEDQLKRH--PGDARLERSLAAI---PVEVKSVTT 130 (987)
T ss_pred CCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--cccHHHHHHHHHh---ccChhHHHH
Confidence 57999999999999998887 68899999999999999999999999999874 4444444433222 899999999
Q ss_pred HHHHHHCCCCCChhhHHHHHHH--------HHhcCChHHHHHHHHHHHHcCCCCCCCCcHHhHHH-HHHHHHhcCChhHH
Q 038190 145 LGRILRKVFSPDVVTLGCLIRG--------LCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYAS-IIDGLCKDGFVNKV 215 (531)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~li~~--------~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~a 215 (531)
++++.+..+. +..++..+... |.+. ++|.+.++ ....... |+..+... +...|.+.|++++|
T Consensus 131 ye~l~~~~P~-n~~~~~~la~~~~~~~~l~y~q~---eqAl~AL~-lr~~~~~----~~~~vL~L~~~rlY~~l~dw~~A 201 (987)
T PRK09782 131 VEELLAQQKA-CDAVPTLRCRSEVGQNALRLAQL---PVARAQLN-DATFAAS----PEGKTLRTDLLQRAIYLKQWSQA 201 (987)
T ss_pred HHHHHHhCCC-ChhHHHHHHHHhhccchhhhhhH---HHHHHHHH-HhhhCCC----CCcHHHHHHHHHHHHHHhCHHHH
Confidence 9999988543 45555555554 5555 44444444 2222112 23443444 48888888999999
Q ss_pred HHHHHHHhhCCCCCCHhhHHHHHHHHHhc-CChhhhhcchHHHHHHHHHHHhCCCCCCccccCCHhhHHHHHHHHhcCCC
Q 038190 216 RVLFLDMKGRGIYPDAFVYNSLIRVYCCA-VNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVL 294 (531)
Q Consensus 216 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~-~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~ 294 (531)
++++.++.+.+.. +..-...+..+|... ++ +.+.. +++. . ..-+...+..+...|.+.|+
T Consensus 202 i~lL~~L~k~~pl-~~~~~~~L~~ay~q~l~~-~~a~a-------l~~~----~------lk~d~~l~~ala~~yi~~G~ 262 (987)
T PRK09782 202 DTLYNEARQQNTL-SAAERRQWFDVLLAGQLD-DRLLA-------LQSQ----G------IFTDPQSRITYATALAYRGE 262 (987)
T ss_pred HHHHHHHHhcCCC-CHHHHHHHHHHHHHhhCH-HHHHH-------Hhch----h------cccCHHHHHHHHHHHHHCCC
Confidence 9998888887543 344345555555552 33 32222 3221 1 22234444444444444444
Q ss_pred HHHHHHHHHHHHhCCCC-C-------------------------------------------------------------
Q 038190 295 VDKAKELFLDMKSRGII-P------------------------------------------------------------- 312 (531)
Q Consensus 295 ~~~a~~~~~~~~~~~~~-~------------------------------------------------------------- 312 (531)
.++|.++++++...-.. |
T Consensus 263 ~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (987)
T PRK09782 263 KARLQHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPAN 342 (987)
T ss_pred HHHHHHHHHhCcccccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcc
Confidence 44444444443221000 0
Q ss_pred ---------------------------------------------------------------------CHHHHHHHHHH
Q 038190 313 ---------------------------------------------------------------------DVVVYSSLIDG 323 (531)
Q Consensus 313 ---------------------------------------------------------------------~~~~~~~ll~~ 323 (531)
+.....-++..
T Consensus 343 ~~~~~r~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~ 422 (987)
T PRK09782 343 EMLEERYAVSVATRNKAEALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASL 422 (987)
T ss_pred hHHHHHHhhccccCchhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHH
Confidence 00011111222
Q ss_pred HHhc---------------------------------------------------------------CCHHHHHHHHHHH
Q 038190 324 YCLM---------------------------------------------------------------GRIDDARKLFVSI 340 (531)
Q Consensus 324 ~~~~---------------------------------------------------------------g~~~~a~~~~~~~ 340 (531)
|.+. |+.++|...+.+.
T Consensus 423 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~~~~~eAi~a~~~A 502 (987)
T PRK09782 423 LESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRDTLPGVALYAWLQA 502 (987)
T ss_pred HHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHhCCcHHHHHHHHHH
Confidence 2221 2222333333332
Q ss_pred HhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-----------cccHHHHHHHHHHHHhCCCCCCHHHH
Q 038190 341 ESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD-----------NSCILEAAELFRTLHNTKFELDLTVF 409 (531)
Q Consensus 341 ~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~-----------~~~~~~a~~~~~~~~~~~~~~~~~~~ 409 (531)
... .|+......+...+...|++++|...|+++......+. .++.++|...++.+.+.... +...+
T Consensus 503 l~~--~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~-~~~l~ 579 (987)
T PRK09782 503 EQR--QPDAWQHRAVAYQAYQVEDYATALAAWQKISLHDMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRGLG-DNALY 579 (987)
T ss_pred HHh--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCc-cHHHH
Confidence 222 12222212222333466777777777776544311111 56677777777777765422 33334
Q ss_pred HHHHHHHHcCCChHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-----------------Hh
Q 038190 410 NCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK-----------------IR 472 (531)
Q Consensus 410 ~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----------------i~ 472 (531)
..+...+...|++++|...+++..+. .|+...|..+..++.+.|++++|+..|++.... .|
T Consensus 580 ~~La~~l~~~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G 657 (987)
T PRK09782 580 WWLHAQRYIPGQPELALNDLTRSLNI--APSANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSG 657 (987)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC
Confidence 44444555668888888888888874 567788888888899999999999999888776 27
Q ss_pred hHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChhHHHhhHHHhhhcchh
Q 038190 473 ECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLLPSFLSRNQE 525 (531)
Q Consensus 473 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 525 (531)
+.++|+..+++.++... -+...+..+..++...|++++|+..+++.....+.
T Consensus 658 ~~eeAi~~l~~AL~l~P-~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~ 709 (987)
T PRK09782 658 DIAQSREMLERAHKGLP-DDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDN 709 (987)
T ss_pred CHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence 89999999999987542 35678888999999999999999999887665543
No 21
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.82 E-value=1.7e-15 Score=152.87 Aligned_cols=382 Identities=13% Similarity=-0.024 Sum_probs=249.8
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCcchHHHHHHHHHHCCCCCChhhHHHHHHHHH
Q 038190 89 SFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLC 168 (531)
Q Consensus 89 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 168 (531)
.+......+.+.|++++|+..|++.++. .|+...|..+..+|.+.|+++.|+..++.+++..+. +..+|..+..+|.
T Consensus 129 ~~k~~G~~~~~~~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~-~~~a~~~~a~a~~ 205 (615)
T TIGR00990 129 KLKEKGNKAYRNKDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALELDPD-YSKALNRRANAYD 205 (615)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHH
Confidence 3556677888999999999999999875 578888999999999999999999999999987533 6678888999999
Q ss_pred hcCChHHHHHHHHHHHHcCCCCCCCCcHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCC--CCCHhhHHHHHHH------
Q 038190 169 MQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGI--YPDAFVYNSLIRV------ 240 (531)
Q Consensus 169 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~--~p~~~~~~~li~~------ 240 (531)
..|++++|+..|..+...+... +... ..++.-+.. ..+........+... .|...........
T Consensus 206 ~lg~~~eA~~~~~~~~~~~~~~----~~~~-~~~~~~~l~----~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (615)
T TIGR00990 206 GLGKYADALLDLTASCIIDGFR----NEQS-AQAVERLLK----KFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPR 276 (615)
T ss_pred HcCCHHHHHHHHHHHHHhCCCc----cHHH-HHHHHHHHH----HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcc
Confidence 9999999999887766532111 1111 111111111 111111111111100 0111100000000
Q ss_pred -----------------HHhcCC---hhhhhcchHHHHHHHHHHHhCCCCCCccccCCHhhHHHHHHHHhcCCCHHHHHH
Q 038190 241 -----------------YCCAVN---WEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKE 300 (531)
Q Consensus 241 -----------------~~~~~~---~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~ 300 (531)
+...|. -..+.+.+++|++.|+.....+.. .+.....+..+...+...|++++|..
T Consensus 277 ~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~----~~~~a~a~~~lg~~~~~~g~~~eA~~ 352 (615)
T TIGR00990 277 PAGLEDSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKL----GEKEAIALNLRGTFKCLKGKHLEALA 352 (615)
T ss_pred hhhhhcccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCC----ChhhHHHHHHHHHHHHHcCCHHHHHH
Confidence 000000 001223455666677777765310 12344567777788888899999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 038190 301 LFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGV 380 (531)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~ 380 (531)
.|++..+.. +-+...|..+...+...|++++|...|+++.+.... +...|..+...|...|++++|...|++..+.
T Consensus 353 ~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l-- 428 (615)
T TIGR00990 353 DLSKSIELD-PRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSE-DPDIYYHRAQLHFIKGEFAQAGKDYQKSIDL-- 428 (615)
T ss_pred HHHHHHHcC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--
Confidence 988887762 223557777788888889999999999888776433 5677888888888889999998888888764
Q ss_pred CCCcccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHcCCHHHH
Q 038190 381 RPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKA 460 (531)
Q Consensus 381 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A 460 (531)
.|+ +...+..+..++.+.|++++|+..|++.++. .+-+...|+.+..++...|++++|
T Consensus 429 ~P~---------------------~~~~~~~la~~~~~~g~~~eA~~~~~~al~~-~P~~~~~~~~lg~~~~~~g~~~~A 486 (615)
T TIGR00990 429 DPD---------------------FIFSHIQLGVTQYKEGSIASSMATFRRCKKN-FPEAPDVYNYYGELLLDQNKFDEA 486 (615)
T ss_pred Ccc---------------------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCChHHHHHHHHHHHHccCHHHH
Confidence 232 6677888888999999999999999988874 233577888888889999999888
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhccCChhHHHhhHHHhhhcch
Q 038190 461 YDLLPDMEEKIRECLKAIELLHKMAKRYVKPDE-ITVSILEELLNKDENCHECMNLLPSFLSRNQ 524 (531)
Q Consensus 461 ~~~~~~~~~~i~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 524 (531)
++.|++..+. -.. ..+...+. ..+...+..+...|++++|.+++++....++
T Consensus 487 ~~~~~~Al~l----------~p~--~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p 539 (615)
T TIGR00990 487 IEKFDTAIEL----------EKE--TKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDP 539 (615)
T ss_pred HHHHHHHHhc----------CCc--cccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCC
Confidence 8777654432 000 00000111 1122222334446999999999988655443
No 22
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.80 E-value=7.9e-16 Score=158.02 Aligned_cols=361 Identities=12% Similarity=0.006 Sum_probs=266.0
Q ss_pred cCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCcchHHHH
Q 038190 65 EVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVA 144 (531)
Q Consensus 65 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~ 144 (531)
.|++++|..+|+..++..|. +...+..+...+...|++++|+..++++.+.. +.+.. +..+..++...|+.++|...
T Consensus 62 ~g~~~~A~~~~~~al~~~P~-~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~ 138 (765)
T PRK10049 62 LKQWQNSLTLWQKALSLEPQ-NDDYQRGLILTLADAGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRA 138 (765)
T ss_pred cCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHH
Confidence 45999999999999886654 56778888899999999999999999998874 55666 88888899999999999999
Q ss_pred HHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCC--CcHHhHHHHHHHHHh-----cCCh---hH
Q 038190 145 LGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVI--PNVICYASIIDGLCK-----DGFV---NK 214 (531)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~~~~-----~~~~---~~ 214 (531)
++++.+..+. +...+..+..++...|..+.|+..++.... .|+.. ........++..... .+++ ++
T Consensus 139 l~~al~~~P~-~~~~~~~la~~l~~~~~~e~Al~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~ 214 (765)
T PRK10049 139 MTQALPRAPQ-TQQYPTEYVQALRNNRLSAPALGAIDDANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADR 214 (765)
T ss_pred HHHHHHhCCC-CHHHHHHHHHHHHHCCChHHHHHHHHhCCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHH
Confidence 9999998644 566677788888899999999999886653 22100 001122223332221 2234 77
Q ss_pred HHHHHHHHhhC-CCCCCHh-hHH----HHHHHHHhcCChhhhhcchHHHHHHHHHHHhCCCCCCccccCCHhhHHHHHHH
Q 038190 215 VRVLFLDMKGR-GIYPDAF-VYN----SLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINS 288 (531)
Q Consensus 215 a~~~~~~m~~~-g~~p~~~-~~~----~li~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ 288 (531)
|+..++.+.+. ...|+.. .+. ..+.++...+++++|+. .|+.+...+. ..|+. ....+..+
T Consensus 215 Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~-------~~~~ll~~~~-----~~P~~-a~~~la~~ 281 (765)
T PRK10049 215 ALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVIS-------EYQRLKAEGQ-----IIPPW-AQRWVASA 281 (765)
T ss_pred HHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHH-------HHHHhhccCC-----CCCHH-HHHHHHHH
Confidence 88888888854 2233321 111 11334456677777777 8888877651 11332 22225778
Q ss_pred HhcCCCHHHHHHHHHHHHhCCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-----------CCC---HHH
Q 038190 289 LCKDVLVDKAKELFLDMKSRGIIP---DVVVYSSLIDGYCLMGRIDDARKLFVSIESEGC-----------IPD---TSS 351 (531)
Q Consensus 289 ~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~-----------~p~---~~~ 351 (531)
|...|++++|..+|+.+.+..... .......+..++...|++++|...++.+..... .|+ ...
T Consensus 282 yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a 361 (765)
T PRK10049 282 YLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQG 361 (765)
T ss_pred HHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHH
Confidence 999999999999999987653111 134566677788999999999999999987632 123 234
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHH
Q 038190 352 YNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKK 431 (531)
Q Consensus 352 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 431 (531)
+..+...+...|+.++|+++++++... .|+ +...+..++..+...|++++|++.+++
T Consensus 362 ~~~~a~~l~~~g~~~eA~~~l~~al~~--~P~---------------------n~~l~~~lA~l~~~~g~~~~A~~~l~~ 418 (765)
T PRK10049 362 QSLLSQVAKYSNDLPQAEMRARELAYN--APG---------------------NQGLRIDYASVLQARGWPRAAENELKK 418 (765)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh--CCC---------------------CHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 556777888999999999999998774 343 788999999999999999999999999
Q ss_pred hhhCCCCCc-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 038190 432 LPRYGPEPN-VVTYTVMICGLCIEGGIEKAYDLLPDMEEK 470 (531)
Q Consensus 432 ~~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 470 (531)
..+. .|+ ...+..++..+...|++++|+.+++++.+.
T Consensus 419 al~l--~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~ 456 (765)
T PRK10049 419 AEVL--EPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAR 456 (765)
T ss_pred HHhh--CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 9985 455 566667777889999999999999888776
No 23
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.80 E-value=1.2e-15 Score=147.42 Aligned_cols=429 Identities=14% Similarity=0.046 Sum_probs=273.4
Q ss_pred CHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCC--CCHhhHHHHHHHHHccCCcchHHHH
Q 038190 67 ELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLL--PDFVSLNILMNCFCKMIGVSDAFVA 144 (531)
Q Consensus 67 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~--~~~~~~~~li~~~~~~g~~~~a~~~ 144 (531)
.+..+..++......++. |+.+.+.|...|.-.|+++.++.+...+...... .-...|..+.++|-..|+++.|...
T Consensus 251 s~~~~~~ll~~ay~~n~~-nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~y 329 (1018)
T KOG2002|consen 251 SYKKGVQLLQRAYKENNE-NPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKY 329 (1018)
T ss_pred HHHHHHHHHHHHHhhcCC-CcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHH
Confidence 556666666666554443 5556666666666666666666666666544211 1123456666666666666666666
Q ss_pred HHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCC-------------------------------
Q 038190 145 LGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVI------------------------------- 193 (531)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~------------------------------- 193 (531)
|.+..+....-.+..+--|...|...|+++.+...|+.+... .|+..
T Consensus 330 Y~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~--~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~ 407 (1018)
T KOG2002|consen 330 YMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQ--LPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVL 407 (1018)
T ss_pred HHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHh--CcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHH
Confidence 666555432211223334555566666666666666555543 22200
Q ss_pred ----CcHHhHHHHHHHHHhcCChhHHHHHHHH----HhhCCCCCCHhhHHHHHHHHHhcCChhhhhcchHHHHHHHHHHH
Q 038190 194 ----PNVICYASIIDGLCKDGFVNKVRVLFLD----MKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFV 265 (531)
Q Consensus 194 ----~~~~~~~~l~~~~~~~~~~~~a~~~~~~----m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~a~~~~~~~~ 265 (531)
.|...|-.+...+....-+ .++.+|.. +...+..+.....|.+...+...|++..|...+..|........
T Consensus 408 ~~~~~d~~a~l~laql~e~~d~~-~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~ 486 (1018)
T KOG2002|consen 408 EQTPVDSEAWLELAQLLEQTDPW-ASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVA 486 (1018)
T ss_pred hcccccHHHHHHHHHHHHhcChH-HHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhc
Confidence 2444554444444433322 23555443 33445557777888888889999999999997777776644322
Q ss_pred hCCCCCCccccCCHhhHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 038190 266 NGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDV-VVYSSLIDGYCLMGRIDDARKLFVSIESEG 344 (531)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g 344 (531)
.... + -.+++.+--.+...+...++++.|.+.|..+.+. .|+- ..|..+.-+....+...+|...+......+
T Consensus 487 n~de--~--~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilke--hp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d 560 (1018)
T KOG2002|consen 487 NKDE--G--KSTNLTLKYNLARLLEELHDTEVAEEMYKSILKE--HPGYIDAYLRLGCMARDKNNLYEASLLLKDALNID 560 (1018)
T ss_pred Cccc--c--ccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHH--CchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcc
Confidence 2220 0 1233434445777888889999999999999987 3443 233333333334578889999999988754
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CC-------------------------cccHHHHHHHHHHHH
Q 038190 345 CIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVR-PD-------------------------NSCILEAAELFRTLH 398 (531)
Q Consensus 345 ~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~-~~-------------------------~~~~~~a~~~~~~~~ 398 (531)
..++..++.+...|.+...+..|.+-|....+.... +| ....++|+++|.++.
T Consensus 561 -~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL 639 (1018)
T KOG2002|consen 561 -SSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVL 639 (1018)
T ss_pred -cCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHH
Confidence 336677777787888888888777766655443222 22 445678888888887
Q ss_pred hCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhHHHHH
Q 038190 399 NTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECLKAI 478 (531)
Q Consensus 399 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~i~~~~~a~ 478 (531)
+..+. |..+-|.+.-.++..|++.+|..+|.+..+... -...+|-.+..+|...|+|..|+++|+...+
T Consensus 640 ~~dpk-N~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~-~~~dv~lNlah~~~e~~qy~~AIqmYe~~lk--------- 708 (1018)
T KOG2002|consen 640 RNDPK-NMYAANGIGIVLAEKGRFSEARDIFSQVREATS-DFEDVWLNLAHCYVEQGQYRLAIQMYENCLK--------- 708 (1018)
T ss_pred hcCcc-hhhhccchhhhhhhccCchHHHHHHHHHHHHHh-hCCceeeeHHHHHHHHHHHHHHHHHHHHHHH---------
Confidence 76544 777778888888888888888888888877532 2455777788888888888888777765433
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHhccCChhHHHhhHHHhhhcch
Q 038190 479 ELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLLPSFLSRNQ 524 (531)
Q Consensus 479 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 524 (531)
+.....+..+...|.+++.+.|++.+|.+.+.......+
T Consensus 709 -------kf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p 747 (1018)
T KOG2002|consen 709 -------KFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAP 747 (1018)
T ss_pred -------HhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCC
Confidence 334456778899999999999999999988766544433
No 24
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.80 E-value=5.9e-15 Score=129.80 Aligned_cols=316 Identities=16% Similarity=0.156 Sum_probs=233.8
Q ss_pred chhHHHhhhhhhcccCCCCCcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccC--CHH-HHHHHHHHHHhCC----
Q 038190 45 STVEEKTKLLKYLSENSKSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKK--YYV-NFICLSERLNTIG---- 117 (531)
Q Consensus 45 ~~~~~~~~l~~~l~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~--~~~-~a~~~~~~m~~~g---- 117 (531)
......+.+++.+++. .+.++.-+|+.|...|...+...-..|++..+-.+ +.. .-.+-|-.|...|
T Consensus 114 ~~V~~E~nL~kmIS~~------EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~ 187 (625)
T KOG4422|consen 114 LQVETENNLLKMISSR------EVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDST 187 (625)
T ss_pred hhhcchhHHHHHHhhc------ccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccccc
Confidence 3444555677777765 68999999999999887767766666665433222 111 0111121221111
Q ss_pred ---------------CCCCHhhHHHHHHHHHccCCcchHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHH
Q 038190 118 ---------------LLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTK 182 (531)
Q Consensus 118 ---------------~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 182 (531)
.+-+..++..+|.++|+--..+.|..+|.+........+..++|.+|.+-.-..+ .+++.+
T Consensus 188 ~sWK~G~vAdL~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~----K~Lv~E 263 (625)
T KOG4422|consen 188 SSWKSGAVADLLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVG----KKLVAE 263 (625)
T ss_pred cccccccHHHHHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhcc----HHHHHH
Confidence 2456789999999999999999999999998887778899999999976554433 678889
Q ss_pred HHHcCCCCCCCCcHHhHHHHHHHHHhcCChhH----HHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChhhhhcchHHHH
Q 038190 183 FVAFDCRPNVIPNVICYASIIDGLCKDGFVNK----VRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAAL 258 (531)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~----a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~a~ 258 (531)
|......| |..|||+++.+..+.|+++. |.+++.+|++.|+.|...+|..+|..+++.++..+...
T Consensus 264 Misqkm~P----nl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as------ 333 (625)
T KOG4422|consen 264 MISQKMTP----NLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVAS------ 333 (625)
T ss_pred HHHhhcCC----chHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhH------
Confidence 99876665 99999999999999998765 46778899999999999999999999998888755322
Q ss_pred HHHHHHHh-C-CCCCCccccCCHhhHHHHHHHHhcCCCHHHHHHHHHHHHhCC----CCCC---HHHHHHHHHHHHhcCC
Q 038190 259 ELHEEFVN-G-NGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRG----IIPD---VVVYSSLIDGYCLMGR 329 (531)
Q Consensus 259 ~~~~~~~~-~-~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~----~~~~---~~~~~~ll~~~~~~g~ 329 (531)
.++.++.. . |.....+.+.|..-|...+..|....+.+.|.++...+.... +.|+ ..-|..+....|+...
T Consensus 334 ~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es 413 (625)
T KOG4422|consen 334 SWINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMES 413 (625)
T ss_pred HHHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHH
Confidence 13333332 1 222222234456667888899999999999998876654321 3333 2346777788888999
Q ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 038190 330 IDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGV 380 (531)
Q Consensus 330 ~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~ 380 (531)
.+.....|+.|.-.-.-|+..+...++++..-.|.++-.-++|.+++..|.
T Consensus 414 ~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~gh 464 (625)
T KOG4422|consen 414 IDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGH 464 (625)
T ss_pred HHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhh
Confidence 999999999999887788999999999999999999999999988887663
No 25
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.80 E-value=2.3e-14 Score=147.63 Aligned_cols=430 Identities=9% Similarity=-0.006 Sum_probs=292.3
Q ss_pred CHHHHHHHHHHHHHcCCCCChhhHHHH-HHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHc-cCCcchHHHH
Q 038190 67 ELNDALCFFNYMIHMQPTPFMPSFNSL-LGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCK-MIGVSDAFVA 144 (531)
Q Consensus 67 ~~~~A~~~~~~~~~~~~~~~~~~~~~l-i~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~-~g~~~~a~~~ 144 (531)
+.++|...++ .....+.|...+.... ...|.+.|++++|++++.++.+.+ +.+......|..+|.. .++ +.+..+
T Consensus 162 q~eqAl~AL~-lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~~-pl~~~~~~~L~~ay~q~l~~-~~a~al 238 (987)
T PRK09782 162 QLPVARAQLN-DATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNEARQQN-TLSAAERRQWFDVLLAGQLD-DRLLAL 238 (987)
T ss_pred hHHHHHHHHH-HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhhCH-HHHHHH
Confidence 3455555555 3333344344433333 777888888888888888888876 4455556666667776 355 666666
Q ss_pred HHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-CCCC------------------------------
Q 038190 145 LGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCR-PNVI------------------------------ 193 (531)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~------------------------------ 193 (531)
+.. .+..+..++..++..|.+.|+.++|..+++++...... |...
T Consensus 239 ~~~----~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~ 314 (987)
T PRK09782 239 QSQ----GIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQY 314 (987)
T ss_pred hch----hcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHH
Confidence 443 22347778888889999999999999888887654222 1111
Q ss_pred -------------------------C----------------------------------cHHhHHHHHHHHHhcCChhH
Q 038190 194 -------------------------P----------------------------------NVICYASIIDGLCKDGFVNK 214 (531)
Q Consensus 194 -------------------------~----------------------------------~~~~~~~l~~~~~~~~~~~~ 214 (531)
| +....--+.-...+.|+.++
T Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~ 394 (987)
T PRK09782 315 VVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRNKAEALRLARLLYQQEPANLTRLDQLTWQLMQNGQSRE 394 (987)
T ss_pred HHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCchhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHH
Confidence 0 11111111122334566666
Q ss_pred HHHHHHHHhhC--CCCCCHhhHHHHHHHHHhcCChhhhhcc------------------h---HHHHHHHHHHHhCCCCC
Q 038190 215 VRVLFLDMKGR--GIYPDAFVYNSLIRVYCCAVNWEDAKGN------------------T---SAALELHEEFVNGNGEL 271 (531)
Q Consensus 215 a~~~~~~m~~~--g~~p~~~~~~~li~~~~~~~~~~~a~~~------------------~---~~a~~~~~~~~~~~~~~ 271 (531)
|.++|+..... ...++.....-++..|.+.+......+. . ..+...+......
T Consensus 395 a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~---- 470 (987)
T PRK09782 395 AADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGD---- 470 (987)
T ss_pred HHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhccc----
Confidence 66666665541 1122333344566666665542221110 0 0111122222221
Q ss_pred CccccC--CHhhHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCH
Q 038190 272 GVICHP--DVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDT 349 (531)
Q Consensus 272 ~~~~~~--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~ 349 (531)
.++ +...|..+..++.. ++.++|...+.+.... .|+......+...+...|++++|...|+++... .|+.
T Consensus 471 ---~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~ 542 (987)
T PRK09782 471 ---MSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQR--QPDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSN 542 (987)
T ss_pred ---CCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCc
Confidence 134 56677888877776 8888999988877765 466555444555567899999999999998765 3445
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-----------c---ccHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 038190 350 SSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD-----------N---SCILEAAELFRTLHNTKFELDLTVFNCLVDG 415 (531)
Q Consensus 350 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~-----------~---~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 415 (531)
..+..+...+.+.|++++|...++...+.. |+ . ++.++|...++...+..+ +...|..+..+
T Consensus 543 ~a~~~la~all~~Gd~~eA~~~l~qAL~l~--P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~P--~~~a~~~LA~~ 618 (987)
T PRK09782 543 EDLLAAANTAQAAGNGAARDRWLQQAEQRG--LGDNALYWWLHAQRYIPGQPELALNDLTRSLNIAP--SANAYVARATI 618 (987)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCC--CHHHHHHHHHH
Confidence 556677888999999999999999998754 43 3 889999999999987654 68889999999
Q ss_pred HHcCCChHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-----------------HhhHHHHH
Q 038190 416 LCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK-----------------IRECLKAI 478 (531)
Q Consensus 416 ~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----------------i~~~~~a~ 478 (531)
+.+.|++++|...+++..+.. +-+...++.+..++...|++++|++.|++..+. .|++++|+
T Consensus 619 l~~lG~~deA~~~l~~AL~l~-Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~ 697 (987)
T PRK09782 619 YRQRHNVPAAVSDLRAALELE-PNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQ 697 (987)
T ss_pred HHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHH
Confidence 999999999999999999852 235677888888999999999999999998876 39999999
Q ss_pred HHHHHHHHcCCCCCH-HHHHHHHHHHhccCChhHHHhhHHHhhhc
Q 038190 479 ELLHKMAKRYVKPDE-ITVSILEELLNKDENCHECMNLLPSFLSR 522 (531)
Q Consensus 479 ~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 522 (531)
..+++.++.. |+. .+.....+.+.+..+++.|.+-+++--.-
T Consensus 698 ~~l~~Al~l~--P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~ 740 (987)
T PRK09782 698 HYARLVIDDI--DNQALITPLTPEQNQQRFNFRRLHEEVGRRWTF 740 (987)
T ss_pred HHHHHHHhcC--CCCchhhhhhhHHHHHHHHHHHHHHHHHHHhhc
Confidence 9999999654 443 66667888888888888888877664433
No 26
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.76 E-value=6.9e-14 Score=123.19 Aligned_cols=393 Identities=16% Similarity=0.176 Sum_probs=205.6
Q ss_pred hhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHH--ccCCcc-hHHHHHHHHHHCCCCCChhhHHHH
Q 038190 87 MPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFC--KMIGVS-DAFVALGRILRKVFSPDVVTLGCL 163 (531)
Q Consensus 87 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~--~~g~~~-~a~~~~~~~~~~~~~~~~~~~~~l 163 (531)
+.+=|.|+.. ...|.++.+.-+|++|.+.|++.+...-..|++..+ ...+.- .-++.|-.|.+.| +.+..+|
T Consensus 116 V~~E~nL~km-IS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~-E~S~~sW--- 190 (625)
T KOG4422|consen 116 VETENNLLKM-ISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFG-EDSTSSW--- 190 (625)
T ss_pred hcchhHHHHH-HhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccc-ccccccc---
Confidence 3445565553 456889999999999999998888877666665432 333332 2234444554444 2222333
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCCCCCcHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHh
Q 038190 164 IRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCC 243 (531)
Q Consensus 164 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~ 243 (531)
+.|++.+ -+|+.. | .+..+|..||.++|+--..+.|.+++++-.....+.+..+||.+|.+-.-
T Consensus 191 -----K~G~vAd--L~~E~~------P---KT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~ 254 (625)
T KOG4422|consen 191 -----KSGAVAD--LLFETL------P---KTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSY 254 (625)
T ss_pred -----ccccHHH--HHHhhc------C---CCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHh
Confidence 2232222 122221 1 13445566666666666666666666665555555555666655544332
Q ss_pred cCChhhhhcchHHHHHHHHHHHhCCCCCCccccCCHhhHHHHHHHHhcCCCHHH----HHHHHHHHHhCCCCCCHHHHHH
Q 038190 244 AVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDK----AKELFLDMKSRGIIPDVVVYSS 319 (531)
Q Consensus 244 ~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~----a~~~~~~~~~~~~~~~~~~~~~ 319 (531)
... .+ +..+|.... ..||..|+|+++++..+.|+++. |.+++.+|++-|+.|...+|..
T Consensus 255 ~~~----K~-------Lv~EMisqk------m~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~ 317 (625)
T KOG4422|consen 255 SVG----KK-------LVAEMISQK------MTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHL 317 (625)
T ss_pred hcc----HH-------HHHHHHHhh------cCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHH
Confidence 211 22 555555555 55666666666666666665543 3455555566666666666666
Q ss_pred HHHHHHhcCCHHH-HHHHHHHHH----hcCCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC----CCCC---
Q 038190 320 LIDGYCLMGRIDD-ARKLFVSIE----SEGCIP----DTSSYNTLINSYSKIEKVEEALSLYGEMISMG----VRPD--- 383 (531)
Q Consensus 320 ll~~~~~~g~~~~-a~~~~~~~~----~~g~~p----~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~----~~~~--- 383 (531)
+|..+++-++..+ +..+..++. ...++| |...|...+..|....+.+-|.++-.-+.... +.|+
T Consensus 318 iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~ 397 (625)
T KOG4422|consen 318 IIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHR 397 (625)
T ss_pred HHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHH
Confidence 6655555554432 222222222 112222 23334444555555555555555444332210 1111
Q ss_pred -------------cccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHhhhCCCCCcHHHHHHHHHH
Q 038190 384 -------------NSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICG 450 (531)
Q Consensus 384 -------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~ 450 (531)
...++.-...|+.++-.-+-|+..+...++++..-.|.++-..++|.+++..|..-+......++..
T Consensus 398 ~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~ 477 (625)
T KOG4422|consen 398 NFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILML 477 (625)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHH
Confidence 2223344444555554555568888888999999999999999999999988766555555555555
Q ss_pred HHHcC-CH-HHHHHHHHHHHHH-HhhHHHHHH-HHHHHHHcCCCCCHHHHHHHHHHHhccCChhHHHhhHHHh
Q 038190 451 LCIEG-GI-EKAYDLLPDMEEK-IRECLKAIE-LLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLLPSF 519 (531)
Q Consensus 451 ~~~~g-~~-~~A~~~~~~~~~~-i~~~~~a~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 519 (531)
+++.. +. .-+.+-|.....+ ..++.++.+ .-.+|.+..+ .....+.++-.+.|.|..++|.+++.-+
T Consensus 478 L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r~~~~--~~t~l~~ia~Ll~R~G~~qkA~e~l~l~ 548 (625)
T KOG4422|consen 478 LARDKLHPLTPEREQLQVAFAKCAADIKEAYESQPIRQRAQDW--PATSLNCIAILLLRAGRTQKAWEMLGLF 548 (625)
T ss_pred HhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHhccC--ChhHHHHHHHHHHHcchHHHHHHHHHHH
Confidence 55443 11 1111112111111 111111111 1122333333 3344566666677777777777777665
No 27
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.76 E-value=1.6e-13 Score=132.04 Aligned_cols=365 Identities=13% Similarity=0.068 Sum_probs=254.7
Q ss_pred CCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCcchHHHHH
Q 038190 66 VELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVAL 145 (531)
Q Consensus 66 g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~ 145 (531)
|++++|.+++.++++..|. +...|..|...|-+.|+.+++...+--.-... +-|...|..+.....+.|+++.|.-.|
T Consensus 153 g~~eeA~~i~~EvIkqdp~-~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ladls~~~~~i~qA~~cy 230 (895)
T KOG2076|consen 153 GDLEEAEEILMEVIKQDPR-NPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLADLSEQLGNINQARYCY 230 (895)
T ss_pred CCHHHHHHHHHHHHHhCcc-chhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHhcccHHHHHHHH
Confidence 6999999999999998876 78899999999999999999998877665554 557789999999999999999999999
Q ss_pred HHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCCCcHHhHHHHHHHHHhcCChhHHHHHHHHHhhC
Q 038190 146 GRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGR 225 (531)
Q Consensus 146 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 225 (531)
.++++..+. +...+---...|-+.|+...|..-|.++.......+.......--.+++.+...++-+.|.+.++.....
T Consensus 231 ~rAI~~~p~-n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~ 309 (895)
T KOG2076|consen 231 SRAIQANPS-NWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSK 309 (895)
T ss_pred HHHHhcCCc-chHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhh
Confidence 999998643 5445555678899999999999999999986321100001112223456677778889999988887652
Q ss_pred -CCCCCHhhHHHHHHHHHhcCChhhhhcchHHHHHHHHHHHhCCC---------------------CCCccccCCHhhHH
Q 038190 226 -GIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNG---------------------ELGVICHPDVLSYC 283 (531)
Q Consensus 226 -g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~ 283 (531)
+-..+...++.++..+.+...++.+.. ....+..... ..+....++... .
T Consensus 310 ~~~~~~~ed~ni~ael~l~~~q~d~~~~-------~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v-~ 381 (895)
T KOG2076|consen 310 EKDEASLEDLNILAELFLKNKQSDKALM-------KIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRV-I 381 (895)
T ss_pred ccccccccHHHHHHHHHHHhHHHHHhhH-------HHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchh-H
Confidence 233456677888888887777776665 5544444100 000012223333 1
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh
Q 038190 284 SIINSLCKDVLVDKAKELFLDMKSRG--IIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSK 361 (531)
Q Consensus 284 ~ll~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~ 361 (531)
-++-++......+....+.....+.. ..-+...|.-+..+|...|++..|..+|..+......-+...|-.+..+|..
T Consensus 382 rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~ 461 (895)
T KOG2076|consen 382 RLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYME 461 (895)
T ss_pred hHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHH
Confidence 23334445555555555666666665 3335677888999999999999999999999987555567889999999999
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHhhh-------
Q 038190 362 IEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPR------- 434 (531)
Q Consensus 362 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~------- 434 (531)
.|..+.|.+.|+..+.. .|+ +...-..|...+-+.|+.++|.+.+..+..
T Consensus 462 l~e~e~A~e~y~kvl~~--~p~---------------------~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e 518 (895)
T KOG2076|consen 462 LGEYEEAIEFYEKVLIL--APD---------------------NLDARITLASLYQQLGNHEKALETLEQIINPDGRNAE 518 (895)
T ss_pred HhhHHHHHHHHHHHHhc--CCC---------------------chhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchh
Confidence 99999999999998873 344 444455555666666666666666666431
Q ss_pred -CCCCCcHHHHHHHHHHHHHcCCHHHHHHHH
Q 038190 435 -YGPEPNVVTYTVMICGLCIEGGIEKAYDLL 464 (531)
Q Consensus 435 -~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 464 (531)
.+..|+........+.+.+.|+.++-+...
T Consensus 519 ~~a~~~e~ri~~~r~d~l~~~gk~E~fi~t~ 549 (895)
T KOG2076|consen 519 ACAWEPERRILAHRCDILFQVGKREEFINTA 549 (895)
T ss_pred hccccHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 223444444445555556666655544333
No 28
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.74 E-value=2.4e-13 Score=137.21 Aligned_cols=392 Identities=15% Similarity=0.088 Sum_probs=255.2
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCH--hhHHHHHHHHHccCCcchHHHHHHHHHHCCCCCChhhHHHHHHH
Q 038190 89 SFNSLLGALAGKKYYVNFICLSERLNTIGLLPDF--VSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRG 166 (531)
Q Consensus 89 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~--~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 166 (531)
.|...| ...+.|++..|++.|++..+.. |+. ..+ .++..+...|+.++|+.++++..... +........+...
T Consensus 37 ~y~~ai-i~~r~Gd~~~Al~~L~qaL~~~--P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p~-n~~~~~llalA~l 111 (822)
T PRK14574 37 QYDSLI-IRARAGDTAPVLDYLQEESKAG--PLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSSM-NISSRGLASAARA 111 (822)
T ss_pred HHHHHH-HHHhCCCHHHHHHHHHHHHhhC--ccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccCC-CCCHHHHHHHHHH
Confidence 344444 4568999999999999998774 443 344 88888889999999999999988211 1223333344668
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCCCCCcHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCC
Q 038190 167 LCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVN 246 (531)
Q Consensus 167 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~ 246 (531)
|...|++++|+++|+++.+. .|+ +...+..++..+...++.++|++.++++... .|+...+..++..+...++
T Consensus 112 y~~~gdyd~Aiely~kaL~~--dP~---n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~ 184 (822)
T PRK14574 112 YRNEKRWDQALALWQSSLKK--DPT---NPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDR 184 (822)
T ss_pred HHHcCCHHHHHHHHHHHHhh--CCC---CHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcch
Confidence 88999999999999999987 553 5677778889999999999999999999875 4555555333333333333
Q ss_pred hhhhhcchHHHHHHHHHHHhCCCCCCccccCCHhhHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHH------HHH
Q 038190 247 WEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVY------SSL 320 (531)
Q Consensus 247 ~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~------~~l 320 (531)
..+|+. .++++.... +-+...+..+..++.+.|-...|+++..+-... +.+....+ ..+
T Consensus 185 ~~~AL~-------~~ekll~~~-------P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~-f~~~~~~~l~~~~~a~~ 249 (822)
T PRK14574 185 NYDALQ-------ASSEAVRLA-------PTSEEVLKNHLEILQRNRIVEPALRLAKENPNL-VSAEHYRQLERDAAAEQ 249 (822)
T ss_pred HHHHHH-------HHHHHHHhC-------CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccc-cCHHHHHHHHHHHHHHH
Confidence 333444 888888765 345666777788888888777777666543211 11111000 011
Q ss_pred HHHH---H--hcCC---HHHHHHHHHHHHhc-CCCCCH-HH----HHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CC--
Q 038190 321 IDGY---C--LMGR---IDDARKLFVSIESE-GCIPDT-SS----YNTLINSYSKIEKVEEALSLYGEMISMGVR-PD-- 383 (531)
Q Consensus 321 l~~~---~--~~g~---~~~a~~~~~~~~~~-g~~p~~-~~----~~~li~~~~~~~~~~~a~~~~~~~~~~~~~-~~-- 383 (531)
++.- . ...+ .+.|..-++.+... +..|.. .. ..-.+-++...|++.++++.|+.|...+.. |+
T Consensus 250 vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~ 329 (822)
T PRK14574 250 VRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYA 329 (822)
T ss_pred HhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHH
Confidence 1000 0 1112 23344444444431 111221 11 122344566667777777777777766643 44
Q ss_pred ----------cccHHHHHHHHHHHHhCC-----CCCCHHHHHHHHHHHHcCCChHHHHHHHHHhhhCCC-----------
Q 038190 384 ----------NSCILEAAELFRTLHNTK-----FELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGP----------- 437 (531)
Q Consensus 384 ----------~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~----------- 437 (531)
.+..++|..+++.+.... ..++......|..+|...+++++|..+++++.+.-.
T Consensus 330 ~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~ 409 (822)
T PRK14574 330 RRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGK 409 (822)
T ss_pred HHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCC
Confidence 555667777777665432 123455568899999999999999999999987311
Q ss_pred CC--cHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChhHHHh
Q 038190 438 EP--NVV-TYTVMICGLCIEGGIEKAYDLLPDMEEKIRECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMN 514 (531)
Q Consensus 438 ~p--~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~i~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 514 (531)
.| |-. .+..++..+...|+..+|++.++++... -+-|......+.+++...|...+|.+
T Consensus 410 ~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~------------------aP~n~~l~~~~A~v~~~Rg~p~~A~~ 471 (822)
T PRK14574 410 EPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSST------------------APANQNLRIALASIYLARDLPRKAEQ 471 (822)
T ss_pred CCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------------------CCCCHHHHHHHHHHHHhcCCHHHHHH
Confidence 12 222 2334566677888888887777665442 35578889999999999999999999
Q ss_pred hHHHhhhcchh
Q 038190 515 LLPSFLSRNQE 525 (531)
Q Consensus 515 ~~~~~~~~~~~ 525 (531)
.++.....++.
T Consensus 472 ~~k~a~~l~P~ 482 (822)
T PRK14574 472 ELKAVESLAPR 482 (822)
T ss_pred HHHHHhhhCCc
Confidence 99876665443
No 29
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.70 E-value=2.4e-12 Score=124.93 Aligned_cols=439 Identities=13% Similarity=0.078 Sum_probs=196.8
Q ss_pred cCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHc---cCCcchH
Q 038190 65 EVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCK---MIGVSDA 141 (531)
Q Consensus 65 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~---~g~~~~a 141 (531)
.|++..|+.+|..+....|.--....-.+...+.+.|+.+.|+..|.+.++.. +.++.++..|...-.. ...+..+
T Consensus 177 kkdY~~al~yyk~al~inp~~~aD~rIgig~Cf~kl~~~~~a~~a~~ralqLd-p~~v~alv~L~~~~l~~~d~~s~~~~ 255 (1018)
T KOG2002|consen 177 KKDYRGALKYYKKALRINPACKADVRIGIGHCFWKLGMSEKALLAFERALQLD-PTCVSALVALGEVDLNFNDSDSYKKG 255 (1018)
T ss_pred cccHHHHHHHHHHHHhcCcccCCCccchhhhHHHhccchhhHHHHHHHHHhcC-hhhHHHHHHHHHHHHHccchHHHHHH
Confidence 34666666666665554433111222222334445566666666666555443 1122222221111111 1123333
Q ss_pred HHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCCCcHHhHHHHHHHHHhcCChhHHHHHHHH
Q 038190 142 FVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLD 221 (531)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 221 (531)
...+...-... .-++.+.+.|...|.-.|++..++.+.+.+........ --...|..+.++|-..|++++|...|.+
T Consensus 256 ~~ll~~ay~~n-~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~--~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~ 332 (1018)
T KOG2002|consen 256 VQLLQRAYKEN-NENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKS--IKAESFYQLGRSYHAQGDFEKAFKYYME 332 (1018)
T ss_pred HHHHHHHHhhc-CCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhH--HHHHHHHHHHHHHHhhccHHHHHHHHHH
Confidence 33333333332 12444555555555555555555555555544311100 0122344555555555555555555555
Q ss_pred HhhCCCCCCHh--hHHHHHHHHHhcCChhhhhc-------------------------------chHHHHHHHHHHHhCC
Q 038190 222 MKGRGIYPDAF--VYNSLIRVYCCAVNWEDAKG-------------------------------NTSAALELHEEFVNGN 268 (531)
Q Consensus 222 m~~~g~~p~~~--~~~~li~~~~~~~~~~~a~~-------------------------------~~~~a~~~~~~~~~~~ 268 (531)
..+. .++.. .+..+...+...|+++.+.. ..+.|..++.......
T Consensus 333 s~k~--~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~ 410 (1018)
T KOG2002|consen 333 SLKA--DNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT 410 (1018)
T ss_pred HHcc--CCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc
Confidence 4433 12221 12233344444444444444 1122222333222221
Q ss_pred CCCCccccCCHhhHHHHHHHHhcCCCHHHHHHHHHHH----HhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-
Q 038190 269 GELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDM----KSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESE- 343 (531)
Q Consensus 269 ~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~----~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~- 343 (531)
+.|...|-.+...+....-+.. +.+|... ...+..+.+...|.+...+...|++.+|...|......
T Consensus 411 -------~~d~~a~l~laql~e~~d~~~s-L~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~ 482 (1018)
T KOG2002|consen 411 -------PVDSEAWLELAQLLEQTDPWAS-LDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKL 482 (1018)
T ss_pred -------cccHHHHHHHHHHHHhcChHHH-HHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhh
Confidence 2233333333333333222221 3333222 12233344444444444444555555555555544432
Q ss_pred --CCCCCH------HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--------------cccHHHHHHHHHHHHhCC
Q 038190 344 --GCIPDT------SSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD--------------NSCILEAAELFRTLHNTK 401 (531)
Q Consensus 344 --g~~p~~------~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~--------------~~~~~~a~~~~~~~~~~~ 401 (531)
...++. .+--.+...+...++++.|.+.|..+.+.. |. .+.+.+|...++.+.+..
T Consensus 483 ~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkeh--p~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d 560 (1018)
T KOG2002|consen 483 LEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEH--PGYIDAYLRLGCMARDKNNLYEASLLLKDALNID 560 (1018)
T ss_pred hhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHC--chhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcc
Confidence 111111 111122333334444555555554444321 11 233444444444444332
Q ss_pred CCCCHHHHHHHHHHHHcCCChHHHHHHHHHhhhC-CCCCcHHHHHHHHHHHHH------------cCCHHHHHHHHHHHH
Q 038190 402 FELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRY-GPEPNVVTYTVMICGLCI------------EGGIEKAYDLLPDME 468 (531)
Q Consensus 402 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-g~~p~~~~~~~l~~~~~~------------~g~~~~A~~~~~~~~ 468 (531)
..++..++.+...+.....+..|.+-|....+. -..+|..+.-+|.+.|.+ .+..++|+++|.++.
T Consensus 561 -~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL 639 (1018)
T KOG2002|consen 561 -SSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVL 639 (1018)
T ss_pred -cCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHH
Confidence 224555555555566655665665544444331 112455555555554432 233556666666665
Q ss_pred HH----------H-------hhHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChhHHHhhHHHhhh
Q 038190 469 EK----------I-------RECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLLPSFLS 521 (531)
Q Consensus 469 ~~----------i-------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 521 (531)
+. | |++.+|+.+|.++.+... -...+|-.++.+|...|+|-.|+++++....
T Consensus 640 ~~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~-~~~dv~lNlah~~~e~~qy~~AIqmYe~~lk 708 (1018)
T KOG2002|consen 640 RNDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATS-DFEDVWLNLAHCYVEQGQYRLAIQMYENCLK 708 (1018)
T ss_pred hcCcchhhhccchhhhhhhccCchHHHHHHHHHHHHHh-hCCceeeeHHHHHHHHHHHHHHHHHHHHHHH
Confidence 54 1 677777777777776543 2445566777777777777777777776443
No 30
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.69 E-value=5.9e-12 Score=112.67 Aligned_cols=414 Identities=11% Similarity=0.044 Sum_probs=225.5
Q ss_pred hhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCcchHHHHHHHHHHCCCCCChhhHHHHHHHH
Q 038190 88 PSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGL 167 (531)
Q Consensus 88 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 167 (531)
..|-....-=..++++..|..+|++.+.-. ..+...|..-+.+=.+......|..+++.++..-+..| ..|--.+-+=
T Consensus 74 ~~WikYaqwEesq~e~~RARSv~ERALdvd-~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVd-qlWyKY~ymE 151 (677)
T KOG1915|consen 74 QVWIKYAQWEESQKEIQRARSVFERALDVD-YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVD-QLWYKYIYME 151 (677)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHhcc-cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHH-HHHHHHHHHH
Confidence 334333333334455555666666655443 23444455555555555556666666665555422211 2333333333
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCCCCCcHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCh
Q 038190 168 CMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNW 247 (531)
Q Consensus 168 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~ 247 (531)
-..|++..|.++|++.... . |+..+|++.|+.=.+-..++.|..+|+..+-. .|++.+|-....--.+.|..
T Consensus 152 E~LgNi~gaRqiferW~~w--~----P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~ 223 (677)
T KOG1915|consen 152 EMLGNIAGARQIFERWMEW--E----PDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNV 223 (677)
T ss_pred HHhcccHHHHHHHHHHHcC--C----CcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcH
Confidence 4445566666666655543 2 35556666666555556666666666555542 35555555555555555555
Q ss_pred hhhhcchHHHHHHHHHHHhCCCCCCccccCCHhhHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHH
Q 038190 248 EDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPD--VVVYSSLIDGYC 325 (531)
Q Consensus 248 ~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~ll~~~~ 325 (531)
..+...|+.|++.+..= .-+...+.++..-=.+...++.|.-+|+-..+. ++.+ ...|..+...=-
T Consensus 224 ~~aR~VyerAie~~~~d-----------~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~-~pk~raeeL~k~~~~fEK 291 (677)
T KOG1915|consen 224 ALARSVYERAIEFLGDD-----------EEAEILFVAFAEFEERQKEYERARFIYKYALDH-IPKGRAEELYKKYTAFEK 291 (677)
T ss_pred HHHHHHHHHHHHHhhhH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCcccHHHHHHHHHHHHH
Confidence 55555444444433220 011223333333333444555555555555443 1111 222333332222
Q ss_pred hcCCHHHHHHH--------HHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--------------
Q 038190 326 LMGRIDDARKL--------FVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD-------------- 383 (531)
Q Consensus 326 ~~g~~~~a~~~--------~~~~~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~-------------- 383 (531)
+.|+.....+. ++.+...+. .|-.+|-..+..-...|+.+...++|++.... +.|-
T Consensus 292 qfGd~~gIEd~Iv~KRk~qYE~~v~~np-~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWi 369 (677)
T KOG1915|consen 292 QFGDKEGIEDAIVGKRKFQYEKEVSKNP-YNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWI 369 (677)
T ss_pred HhcchhhhHHHHhhhhhhHHHHHHHhCC-CCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHH
Confidence 33333222221 222333221 24445555555555555555555555555432 2222
Q ss_pred ---------cccHHHHHHHHHHHHhCCCCCCHHHHH----HHHHHHHcCCChHHHHHHHHHhhhCCCCCcHHHHHHHHHH
Q 038190 384 ---------NSCILEAAELFRTLHNTKFELDLTVFN----CLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICG 450 (531)
Q Consensus 384 ---------~~~~~~a~~~~~~~~~~~~~~~~~~~~----~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~ 450 (531)
..+.+.+.++++...+. ++....||. .....-.++.++..|.+++...+. .-|...+|...|..
T Consensus 370 nYalyeEle~ed~ertr~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG--~cPK~KlFk~YIel 446 (677)
T KOG1915|consen 370 NYALYEELEAEDVERTRQVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIG--KCPKDKLFKGYIEL 446 (677)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhc--cCCchhHHHHHHHH
Confidence 34445555555555542 122333433 334444577888888888887774 57888888888888
Q ss_pred HHHcCCHHHHHHHHHHHHHH-----------------HhhHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHhccCChhHH
Q 038190 451 LCIEGGIEKAYDLLPDMEEK-----------------IRECLKAIELLHKMAKRYV-KPDEITVSILEELLNKDENCHEC 512 (531)
Q Consensus 451 ~~~~g~~~~A~~~~~~~~~~-----------------i~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~a 512 (531)
-.+.++++.+..++++..+- +|+.+.|..+|+-.+.... .-....|..+|+--...|.+++|
T Consensus 447 ElqL~efDRcRkLYEkfle~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~eka 526 (677)
T KOG1915|consen 447 ELQLREFDRCRKLYEKFLEFSPENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKA 526 (677)
T ss_pred HHHHhhHHHHHHHHHHHHhcChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHH
Confidence 88888888888888887664 5888999999988885432 22245677788888889999999
Q ss_pred HhhHHHhhhcchhhhh
Q 038190 513 MNLLPSFLSRNQEESK 528 (531)
Q Consensus 513 ~~~~~~~~~~~~~~~~ 528 (531)
..+.+++..++.+.+.
T Consensus 527 R~LYerlL~rt~h~kv 542 (677)
T KOG1915|consen 527 RALYERLLDRTQHVKV 542 (677)
T ss_pred HHHHHHHHHhcccchH
Confidence 9999998888776553
No 31
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.66 E-value=2.3e-12 Score=114.57 Aligned_cols=401 Identities=15% Similarity=0.130 Sum_probs=222.9
Q ss_pred CHHHHHHHHHHHHHcCCCCChhhH-HHHHHHHHccCCHHHHHHHHHHHHhCCCCCC----HhhHHHHHHHHHccCCcchH
Q 038190 67 ELNDALCFFNYMIHMQPTPFMPSF-NSLLGALAGKKYYVNFICLSERLNTIGLLPD----FVSLNILMNCFCKMIGVSDA 141 (531)
Q Consensus 67 ~~~~A~~~~~~~~~~~~~~~~~~~-~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~----~~~~~~li~~~~~~g~~~~a 141 (531)
.+.+|+..++-+.+...-|+.-.. -.+...+.+.+.+.+|+++|+-.+..-...+ ..+.+.+...+.+.|+++.|
T Consensus 216 m~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvtfiq~gqy~da 295 (840)
T KOG2003|consen 216 MTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTFIQAGQYDDA 295 (840)
T ss_pred HHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeEEecccchhh
Confidence 456666666666654444443322 1233445566667777777666554421111 12333344445566777777
Q ss_pred HHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCC--------CcHHhHHH------------
Q 038190 142 FVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVI--------PNVICYAS------------ 201 (531)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~--------~~~~~~~~------------ 201 (531)
+.-|+...+. .|+..+--.|+-++..-|+-++..+.|.+|+..-..++.. |+....+.
T Consensus 296 insfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd~lk~~ek 373 (840)
T KOG2003|consen 296 INSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKNDHLKNMEK 373 (840)
T ss_pred HhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhHHHHHHHH
Confidence 7777666655 3555544445555555666666666666665432111111 11111100
Q ss_pred ---------------------------------------------------HHHHHHhcCChhHHHHHHHHHhhCCCCCC
Q 038190 202 ---------------------------------------------------IIDGLCKDGFVNKVRVLFLDMKGRGIYPD 230 (531)
Q Consensus 202 ---------------------------------------------------l~~~~~~~~~~~~a~~~~~~m~~~g~~p~ 230 (531)
-...+.+.|+++.|+++++-+.+..-+.-
T Consensus 374 ~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilkv~~~kdnk~~ 453 (840)
T KOG2003|consen 374 ENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILKVFEKKDNKTA 453 (840)
T ss_pred hhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHHHHhccchhh
Confidence 01236677888888888877766522211
Q ss_pred HhhHHHHHHHHHh-c-CChhhhhcchHHHHHHHHHHHhCCCCCCccccCCHhhHHHHHHHHhcCCCHHHHHHHHHHHHhC
Q 038190 231 AFVYNSLIRVYCC-A-VNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSR 308 (531)
Q Consensus 231 ~~~~~~li~~~~~-~-~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 308 (531)
...-+.+-..+.- . .++.+|.. +-+.....+ .-+....+.-.+....+|++++|.+.|++....
T Consensus 454 saaa~nl~~l~flqggk~~~~aqq-------yad~aln~d-------ryn~~a~~nkgn~~f~ngd~dka~~~ykeal~n 519 (840)
T KOG2003|consen 454 SAAANNLCALRFLQGGKDFADAQQ-------YADIALNID-------RYNAAALTNKGNIAFANGDLDKAAEFYKEALNN 519 (840)
T ss_pred HHHhhhhHHHHHHhcccchhHHHH-------HHHHHhccc-------ccCHHHhhcCCceeeecCcHHHHHHHHHHHHcC
Confidence 1111222111111 1 12223322 222222211 112222222223334567777777777777765
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-----
Q 038190 309 GIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD----- 383 (531)
Q Consensus 309 ~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~----- 383 (531)
.-.-....||+=+ .+-..|++++|.+.|-++...= .-+..+...+...|....++.+|++++-... .+.|+
T Consensus 520 dasc~ealfnigl-t~e~~~~ldeald~f~klh~il-~nn~evl~qianiye~led~aqaie~~~q~~--slip~dp~il 595 (840)
T KOG2003|consen 520 DASCTEALFNIGL-TAEALGNLDEALDCFLKLHAIL-LNNAEVLVQIANIYELLEDPAQAIELLMQAN--SLIPNDPAIL 595 (840)
T ss_pred chHHHHHHHHhcc-cHHHhcCHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHhhCHHHHHHHHHHhc--ccCCCCHHHH
Confidence 2221222222222 3556677777777776654321 1255566666677777777777777764433 34444
Q ss_pred ---------cccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHhhhCCCCCcHHHHHHHHHHHH-H
Q 038190 384 ---------NSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLC-I 453 (531)
Q Consensus 384 ---------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~-~ 453 (531)
.|+-.+|.+.+..-.. -++-|..+...|..-|....-+++|..+|++..- ++|+..-|..|+..|. +
T Consensus 596 skl~dlydqegdksqafq~~ydsyr-yfp~nie~iewl~ayyidtqf~ekai~y~ekaal--iqp~~~kwqlmiasc~rr 672 (840)
T KOG2003|consen 596 SKLADLYDQEGDKSQAFQCHYDSYR-YFPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQPNQSKWQLMIASCFRR 672 (840)
T ss_pred HHHHHHhhcccchhhhhhhhhhccc-ccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cCccHHHHHHHHHHHHHh
Confidence 2333333333332222 2345888999999999999999999999998765 6899999998887665 6
Q ss_pred cCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCC
Q 038190 454 EGGIEKAYDLLPDMEEKIRECLKAIELLHKMAKRYVKPDEITVSILEELLNKDEN 508 (531)
Q Consensus 454 ~g~~~~A~~~~~~~~~~i~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 508 (531)
.|++.+|.++|++..++ ++-|...+..|++.+...|.
T Consensus 673 sgnyqka~d~yk~~hrk------------------fpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 673 SGNYQKAFDLYKDIHRK------------------FPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred cccHHHHHHHHHHHHHh------------------CccchHHHHHHHHHhccccc
Confidence 89999998888877654 66677777788888777763
No 32
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.65 E-value=1.4e-12 Score=123.71 Aligned_cols=282 Identities=12% Similarity=-0.013 Sum_probs=170.7
Q ss_pred ccCCHHHHHHHHHHHHhCCCCCCHhh-HHHHHHHHHccCCcchHHHHHHHHHHCCCCCChhhH--HHHHHHHHhcCChHH
Q 038190 99 GKKYYVNFICLSERLNTIGLLPDFVS-LNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTL--GCLIRGLCMQGKFTE 175 (531)
Q Consensus 99 ~~~~~~~a~~~~~~m~~~g~~~~~~~-~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~--~~li~~~~~~g~~~~ 175 (531)
-.|+++.|.+.+....+.. +++.. |.....+..+.|+++.|...+.++.+. .|+.... ......+...|+++.
T Consensus 96 ~eGd~~~A~k~l~~~~~~~--~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~ 171 (398)
T PRK10747 96 AEGDYQQVEKLMTRNADHA--EQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHA 171 (398)
T ss_pred hCCCHHHHHHHHHHHHhcc--cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHH
Confidence 3699999998888766542 22333 333345557899999999999999876 3444322 244678899999999
Q ss_pred HHHHHHHHHHcCCCCCCCCcHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHhhHH--------HHHHHHHhcCCh
Q 038190 176 ASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYN--------SLIRVYCCAVNW 247 (531)
Q Consensus 176 a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~--------~li~~~~~~~~~ 247 (531)
|...++++.+. .|+ +......+...|.+.|++++|.+++..+.+.+..++ ..+. .++.......+.
T Consensus 172 Al~~l~~~~~~--~P~---~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~-~~~~~l~~~a~~~l~~~~~~~~~~ 245 (398)
T PRK10747 172 ARHGVDKLLEV--APR---HPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDE-EHRAMLEQQAWIGLMDQAMADQGS 245 (398)
T ss_pred HHHHHHHHHhc--CCC---CHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCH-HHHHHHHHHHHHHHHHHHHHhcCH
Confidence 99999999887 453 778899999999999999999999999998765432 2222 111111111111
Q ss_pred hhhhcchHHHHHHHHHHHhCCCCCCccccCCHhhHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 038190 248 EDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLM 327 (531)
Q Consensus 248 ~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 327 (531)
+...++++.+... .+.+......+...+...|+.++|..++++..+. .++.... ++.+....
T Consensus 246 -------~~l~~~w~~lp~~-------~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~--~l~~~l~~ 307 (398)
T PRK10747 246 -------EGLKRWWKNQSRK-------TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV--LLIPRLKT 307 (398)
T ss_pred -------HHHHHHHHhCCHH-------HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH--HHHhhccC
Confidence 1111133332221 1234555555666666666666666666665553 3333211 22223344
Q ss_pred CCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHhCCCCCCHH
Q 038190 328 GRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLT 407 (531)
Q Consensus 328 g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 407 (531)
++.+++.+..+...+..+. |...+..+...|.+.+++++|.+.|+...+. .|+..
T Consensus 308 ~~~~~al~~~e~~lk~~P~-~~~l~l~lgrl~~~~~~~~~A~~~le~al~~------------------------~P~~~ 362 (398)
T PRK10747 308 NNPEQLEKVLRQQIKQHGD-TPLLWSTLGQLLMKHGEWQEASLAFRAALKQ------------------------RPDAY 362 (398)
T ss_pred CChHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc------------------------CCCHH
Confidence 6666666666665554322 4444555556666666666666666665542 23555
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHhh
Q 038190 408 VFNCLVDGLCKSWRLRSAWELFKKLP 433 (531)
Q Consensus 408 ~~~~l~~~~~~~g~~~~A~~~~~~~~ 433 (531)
.+..+..++.+.|+.++|.+++++..
T Consensus 363 ~~~~La~~~~~~g~~~~A~~~~~~~l 388 (398)
T PRK10747 363 DYAWLADALDRLHKPEEAAAMRRDGL 388 (398)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 55566666666666666666665543
No 33
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.65 E-value=1.1e-10 Score=108.70 Aligned_cols=425 Identities=13% Similarity=0.023 Sum_probs=208.7
Q ss_pred CHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCcchHHHHHH
Q 038190 67 ELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALG 146 (531)
Q Consensus 67 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 146 (531)
+.++|+-++.+..+.-+. +...|. +|++..-|+.|..++++..+. ++.+..+|.+....=-..|+.+.+..+++
T Consensus 391 ~~~darilL~rAveccp~-s~dLwl----AlarLetYenAkkvLNkaRe~-iptd~~IWitaa~LEE~ngn~~mv~kii~ 464 (913)
T KOG0495|consen 391 EPEDARILLERAVECCPQ-SMDLWL----ALARLETYENAKKVLNKAREI-IPTDREIWITAAKLEEANGNVDMVEKIID 464 (913)
T ss_pred ChHHHHHHHHHHHHhccc-hHHHHH----HHHHHHHHHHHHHHHHHHHhh-CCCChhHHHHHHHHHHhcCCHHHHHHHHH
Confidence 455566667666664333 333333 344445566666666666554 45566666665555556666666666654
Q ss_pred HHH----HCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCCCcHHhHHHHHHHHHhcCChhHHHHHHHHH
Q 038190 147 RIL----RKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDM 222 (531)
Q Consensus 147 ~~~----~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m 222 (531)
+.+ ..|+..+...|-.=...|-..|..--+..+....+..|+... .--.+|..-...|.+.+.++-|..+|...
T Consensus 465 rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEee--d~~~tw~~da~~~~k~~~~~carAVya~a 542 (913)
T KOG0495|consen 465 RGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEE--DRKSTWLDDAQSCEKRPAIECARAVYAHA 542 (913)
T ss_pred HHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccc--hhHhHHhhhHHHHHhcchHHHHHHHHHHH
Confidence 432 345555555555555555555555555555555555554432 12335555555555555555555555555
Q ss_pred hhCCCCCCHhhHHHHHHHHHhcCChhhhhcchHHHHHHHHHHHhCCCCCCccccCCHhhHHHHHHHHhcCCCHHHHHHHH
Q 038190 223 KGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELF 302 (531)
Q Consensus 223 ~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~ 302 (531)
.+. ++-+...|......--..|..+.... +++...... +-....|-.....+-..|+...|..++
T Consensus 543 lqv-fp~k~slWlra~~~ek~hgt~Esl~A-------llqkav~~~-------pkae~lwlM~ake~w~agdv~~ar~il 607 (913)
T KOG0495|consen 543 LQV-FPCKKSLWLRAAMFEKSHGTRESLEA-------LLQKAVEQC-------PKAEILWLMYAKEKWKAGDVPAARVIL 607 (913)
T ss_pred Hhh-ccchhHHHHHHHHHHHhcCcHHHHHH-------HHHHHHHhC-------CcchhHHHHHHHHHHhcCCcHHHHHHH
Confidence 443 12233344444333333444444444 333333221 222233333333444444444444444
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 038190 303 LDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRP 382 (531)
Q Consensus 303 ~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~ 382 (531)
....+.... +...|-+-+..-.....++.|..+|.+.... .|+...|.--+..---.+..++|.+++++..+. .|
T Consensus 608 ~~af~~~pn-seeiwlaavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~--fp 682 (913)
T KOG0495|consen 608 DQAFEANPN-SEEIWLAAVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEALRLLEEALKS--FP 682 (913)
T ss_pred HHHHHhCCC-cHHHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh--CC
Confidence 444443211 3334444444444444444444444444432 223333333333333334444444444444331 22
Q ss_pred C--------------cccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHhhhCCCCCcHHHHHHHH
Q 038190 383 D--------------NSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMI 448 (531)
Q Consensus 383 ~--------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~ 448 (531)
+ .++++.|...|..=.+ .++-.+..|..|...--+.|.+-.|..++++..-.+ +-+...|-..|
T Consensus 683 ~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k-~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkN-Pk~~~lwle~I 760 (913)
T KOG0495|consen 683 DFHKLWLMLGQIEEQMENIEMAREAYLQGTK-KCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN-PKNALLWLESI 760 (913)
T ss_pred chHHHHHHHhHHHHHHHHHHHHHHHHHhccc-cCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC-CCcchhHHHHH
Confidence 2 1111111111111000 011123334444444444455555555555444332 12444455555
Q ss_pred HHHHHcCCHHHHHHHHHHHHHH-----------------------------------------------HhhHHHHHHHH
Q 038190 449 CGLCIEGGIEKAYDLLPDMEEK-----------------------------------------------IRECLKAIELL 481 (531)
Q Consensus 449 ~~~~~~g~~~~A~~~~~~~~~~-----------------------------------------------i~~~~~a~~~~ 481 (531)
..-.+.|+.+.|..+..+..+. -.++++|+..|
T Consensus 761 r~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALkkce~dphVllaia~lfw~e~k~~kar~Wf 840 (913)
T KOG0495|consen 761 RMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAIAKLFWSEKKIEKAREWF 840 (913)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555555444444443 17789999999
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHhccCChhHHHhhHHHhhhc
Q 038190 482 HKMAKRYVKPDEITVSILEELLNKDENCHECMNLLPSFLSR 522 (531)
Q Consensus 482 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 522 (531)
.+..+.+. -...+|.-+..-+.+.|.-++-.+++.++...
T Consensus 841 ~Ravk~d~-d~GD~wa~fykfel~hG~eed~kev~~~c~~~ 880 (913)
T KOG0495|consen 841 ERAVKKDP-DNGDAWAWFYKFELRHGTEEDQKEVLKKCETA 880 (913)
T ss_pred HHHHccCC-ccchHHHHHHHHHHHhCCHHHHHHHHHHHhcc
Confidence 99986652 24478888888999999888888888776544
No 34
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.63 E-value=2.2e-12 Score=123.10 Aligned_cols=302 Identities=12% Similarity=-0.020 Sum_probs=212.6
Q ss_pred HHHHHHHH--HccCCHHHHHHHHHHHHhCCCCCCHh-hHHHHHHHHHccCCcchHHHHHHHHHHCCCCCChhhHHHHHHH
Q 038190 90 FNSLLGAL--AGKKYYVNFICLSERLNTIGLLPDFV-SLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRG 166 (531)
Q Consensus 90 ~~~li~~~--~~~~~~~~a~~~~~~m~~~g~~~~~~-~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 166 (531)
+..+..++ ...|+++.|.+.+.+..+.. |+.. .+-....+..+.|+++.|...+.++.+....+...+.......
T Consensus 85 ~~~~~~glla~~~g~~~~A~~~l~~~~~~~--~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l 162 (409)
T TIGR00540 85 QKQTEEALLKLAEGDYAKAEKLIAKNADHA--AEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRI 162 (409)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHhhcC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHH
Confidence 34444443 36799999999999887763 4433 3445567788889999999999998876433333345556888
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCCCCCcHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHhhHH-HHHHHH---H
Q 038190 167 LCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYN-SLIRVY---C 242 (531)
Q Consensus 167 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~-~li~~~---~ 242 (531)
+...|+++.|...++.+.+. .|+ +..++..+...+...|++++|.+.+..+.+.++. +...+. .-..++ .
T Consensus 163 ~l~~~~~~~Al~~l~~l~~~--~P~---~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~~l 236 (409)
T TIGR00540 163 LLAQNELHAARHGVDKLLEM--APR---HKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAEIGLL 236 (409)
T ss_pred HHHCCCHHHHHHHHHHHHHh--CCC---CHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHH
Confidence 99999999999999999987 453 6778999999999999999999999999988755 333332 111222 2
Q ss_pred hcCChhhhhcchHHHHHHHHHHHhCCCCCCccccCCHhhHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHH---HHH
Q 038190 243 CAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVV---YSS 319 (531)
Q Consensus 243 ~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~ 319 (531)
..+..+.+.. .+..+....+. ..+.+...+..+...+...|+.++|.+++++..+.. ||... ...
T Consensus 237 ~~~~~~~~~~-------~L~~~~~~~p~---~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~--pd~~~~~~~~l 304 (409)
T TIGR00540 237 DEAMADEGID-------GLLNWWKNQPR---HRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL--GDDRAISLPLC 304 (409)
T ss_pred HHHHHhcCHH-------HHHHHHHHCCH---HHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC--CCcccchhHHH
Confidence 2222222222 33333332200 012377888889999999999999999999998863 34331 111
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHH
Q 038190 320 LIDGYCLMGRIDDARKLFVSIESEGCIPDT--SSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTL 397 (531)
Q Consensus 320 ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~--~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 397 (531)
........++.+.+.+.++...+.... |. ....++...|.+.|++++|.+.|+.......
T Consensus 305 ~~~~~l~~~~~~~~~~~~e~~lk~~p~-~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~----------------- 366 (409)
T TIGR00540 305 LPIPRLKPEDNEKLEKLIEKQAKNVDD-KPKCCINRALGQLLMKHGEFIEAADAFKNVAACKE----------------- 366 (409)
T ss_pred HHhhhcCCCChHHHHHHHHHHHHhCCC-ChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhc-----------------
Confidence 222234457888899999888776332 34 5566888999999999999999995333222
Q ss_pred HhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHhhh
Q 038190 398 HNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPR 434 (531)
Q Consensus 398 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 434 (531)
.|+...+..+...+.+.|+.++|.++|++...
T Consensus 367 -----~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 367 -----QLDANDLAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred -----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34777788999999999999999999998654
No 35
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.63 E-value=5.7e-12 Score=113.22 Aligned_cols=400 Identities=14% Similarity=0.060 Sum_probs=207.5
Q ss_pred CcCCHHHHHHHHHHHHHcCCCCC-hhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC-HhhHHHHHHHHHccCCcchH
Q 038190 64 GEVELNDALCFFNYMIHMQPTPF-MPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPD-FVSLNILMNCFCKMIGVSDA 141 (531)
Q Consensus 64 ~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~-~~~~~~li~~~~~~g~~~~a 141 (531)
+.|++++|+..+.+.++.. |+ ...|.....+|...|+|+++.+.-...++.+ |+ ...+..-..++-..|++++|
T Consensus 127 ~~kkY~eAIkyY~~AI~l~--p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~--P~Y~KAl~RRA~A~E~lg~~~ea 202 (606)
T KOG0547|consen 127 RNKKYDEAIKYYTQAIELC--PDEPIFYSNRAACYESLGDWEKVIEDCTKALELN--PDYVKALLRRASAHEQLGKFDEA 202 (606)
T ss_pred hcccHHHHHHHHHHHHhcC--CCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcC--cHHHHHHHHHHHHHHhhccHHHH
Confidence 6779999999999998844 45 6677888888889999999998888888663 43 34666666777788888877
Q ss_pred HHHHHHHH-HCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCCCcHHhHHHHHHHHHhcCChhHHHHHHH
Q 038190 142 FVALGRIL-RKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFL 220 (531)
Q Consensus 142 ~~~~~~~~-~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 220 (531)
+.=..-.. -.|+. +..+--.+=+.+-+. |..-.++-.... .+.+-|+....++....+...-..
T Consensus 203 l~D~tv~ci~~~F~-n~s~~~~~eR~Lkk~-----a~~ka~e~~k~n-r~p~lPS~~fi~syf~sF~~~~~~-------- 267 (606)
T KOG0547|consen 203 LFDVTVLCILEGFQ-NASIEPMAERVLKKQ-----AMKKAKEKLKEN-RPPVLPSATFIASYFGSFHADPKP-------- 267 (606)
T ss_pred HHhhhHHHHhhhcc-cchhHHHHHHHHHHH-----HHHHHHHhhccc-CCCCCCcHHHHHHHHhhccccccc--------
Confidence 54222211 11111 111111111111111 111112211111 222234444333333332211000
Q ss_pred HHhhCCCCCCHhhHHHHHHHHHhc-----CChhhhhcchHHHHHHHHHHHhCCCCCCccccCCH------hhHHHHHHHH
Q 038190 221 DMKGRGIYPDAFVYNSLIRVYCCA-----VNWEDAKGNTSAALELHEEFVNGNGELGVICHPDV------LSYCSIINSL 289 (531)
Q Consensus 221 ~m~~~g~~p~~~~~~~li~~~~~~-----~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~------~~~~~ll~~~ 289 (531)
.+ ..+.......+..++... ..+..+.....+....+..-...+ ..|. .+......-+
T Consensus 268 ~~----~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n-------~~d~~le~~A~al~~~gtF~ 336 (606)
T KOG0547|consen 268 LF----DNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVN-------EIDAELEYMAEALLLRGTFH 336 (606)
T ss_pred cc----cCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhcccc-------ccchhHHHHHHHHHHhhhhh
Confidence 00 000000000000000000 000011110000000000000000 0010 0111111112
Q ss_pred hcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 038190 290 CKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEAL 369 (531)
Q Consensus 290 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~~~~~~a~ 369 (531)
.-.|+.-.|..-|+...+....++ ..|--+..+|....+.++.++.|++..+.+.. ++.+|..-...+.-.+++++|.
T Consensus 337 fL~g~~~~a~~d~~~~I~l~~~~~-~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~-n~dvYyHRgQm~flL~q~e~A~ 414 (606)
T KOG0547|consen 337 FLKGDSLGAQEDFDAAIKLDPAFN-SLYIKRAAAYADENQSEKMWKDFNKAEDLDPE-NPDVYYHRGQMRFLLQQYEEAI 414 (606)
T ss_pred hhcCCchhhhhhHHHHHhcCcccc-hHHHHHHHHHhhhhccHHHHHHHHHHHhcCCC-CCchhHhHHHHHHHHHHHHHHH
Confidence 234566666666666665533322 22555555566666666677777666665544 5555655555566666666666
Q ss_pred HHHHHHHhCCCCCCcccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHhhhCCCCCcHHHHHHHHH
Q 038190 370 SLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMIC 449 (531)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~ 449 (531)
.-|++.++. .|. +...|..+.-+..+.+.+++++..|++.++. ++.-+..|+....
T Consensus 415 aDF~Kai~L--~pe---------------------~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAe 470 (606)
T KOG0547|consen 415 ADFQKAISL--DPE---------------------NAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAE 470 (606)
T ss_pred HHHHHHhhc--Chh---------------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHH
Confidence 666666542 222 4455555555556666666666666666654 4445666666666
Q ss_pred HHHHcCCHHHHHHHHHHHHHH------------------------HhhHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc
Q 038190 450 GLCIEGGIEKAYDLLPDMEEK------------------------IRECLKAIELLHKMAKRYVKPDEITVSILEELLNK 505 (531)
Q Consensus 450 ~~~~~g~~~~A~~~~~~~~~~------------------------i~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 505 (531)
.+...+++++|++.|+..++. -+++..|..++.+.++.+.+ ....|..|......
T Consensus 471 iLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~Dpk-ce~A~~tlaq~~lQ 549 (606)
T KOG0547|consen 471 ILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQWKEDINQAENLLRKAIELDPK-CEQAYETLAQFELQ 549 (606)
T ss_pred HHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhhchhhhHHHHHHHHHHHHccCch-HHHHHHHHHHHHHH
Confidence 666666666666666666554 06677778888888765543 34578889999999
Q ss_pred cCChhHHHhhHHHhh
Q 038190 506 DENCHECMNLLPSFL 520 (531)
Q Consensus 506 ~g~~~~a~~~~~~~~ 520 (531)
.|+.++|+++|++-.
T Consensus 550 ~~~i~eAielFEksa 564 (606)
T KOG0547|consen 550 RGKIDEAIELFEKSA 564 (606)
T ss_pred HhhHHHHHHHHHHHH
Confidence 999999999998754
No 36
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.61 E-value=3.1e-10 Score=101.90 Aligned_cols=445 Identities=12% Similarity=0.064 Sum_probs=283.6
Q ss_pred CcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCH-hhHHHHHHHHHccCCcchHH
Q 038190 64 GEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDF-VSLNILMNCFCKMIGVSDAF 142 (531)
Q Consensus 64 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~-~~~~~li~~~~~~g~~~~a~ 142 (531)
.++++..|+.+|++++..+.. +...|-..+..=.++..+..|..+|++.+..- |-+ ..|...+..=-..|+...|.
T Consensus 85 sq~e~~RARSv~ERALdvd~r-~itLWlkYae~Emknk~vNhARNv~dRAvt~l--PRVdqlWyKY~ymEE~LgNi~gaR 161 (677)
T KOG1915|consen 85 SQKEIQRARSVFERALDVDYR-NITLWLKYAEFEMKNKQVNHARNVWDRAVTIL--PRVDQLWYKYIYMEEMLGNIAGAR 161 (677)
T ss_pred hHHHHHHHHHHHHHHHhcccc-cchHHHHHHHHHHhhhhHhHHHHHHHHHHHhc--chHHHHHHHHHHHHHHhcccHHHH
Confidence 356889999999999886644 78889888888889999999999999998653 332 35556666666779999999
Q ss_pred HHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCCCcHHhHHHHHHHHHhcCChhHHHHHHHHH
Q 038190 143 VALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDM 222 (531)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m 222 (531)
++|+.-.+- +|+...|++.|+.=.+-+.++.|..++++.+-. . |++.+|--....=.++|+...|..+|...
T Consensus 162 qiferW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~~--H----P~v~~wikyarFE~k~g~~~~aR~VyerA 233 (677)
T KOG1915|consen 162 QIFERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVLV--H----PKVSNWIKYARFEEKHGNVALARSVYERA 233 (677)
T ss_pred HHHHHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--c----ccHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 999988765 799999999999999999999999999998763 3 58889988888888999999999999887
Q ss_pred hhC-CC-CCCHhhHHHHHHHHHhcCChhhhhcchHHHH---------HHHHHHHhC----CCCCCc--------------
Q 038190 223 KGR-GI-YPDAFVYNSLIRVYCCAVNWEDAKGNTSAAL---------ELHEEFVNG----NGELGV-------------- 273 (531)
Q Consensus 223 ~~~-g~-~p~~~~~~~li~~~~~~~~~~~a~~~~~~a~---------~~~~~~~~~----~~~~~~-------------- 273 (531)
.+. |- ..+...+.+...--.++..++.|...|.-|+ +++...... |...|.
T Consensus 234 ie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~ 313 (677)
T KOG1915|consen 234 IEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEK 313 (677)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHH
Confidence 653 11 0112223333222223333333333222222 122221110 000000
Q ss_pred ---cccCCHhhHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCH--HHHHHHHH-----H---HHhcCCHHHHHHHHHHH
Q 038190 274 ---ICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDV--VVYSSLID-----G---YCLMGRIDDARKLFVSI 340 (531)
Q Consensus 274 ---~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~ll~-----~---~~~~g~~~~a~~~~~~~ 340 (531)
..+-|-.+|-..+..-...|+.+...++|+....+ ++|-. ..|...|. + =....+.+.+.++|+..
T Consensus 314 ~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~ 392 (677)
T KOG1915|consen 314 EVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQAC 392 (677)
T ss_pred HHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 01334556666666666777888888888777754 44421 11111111 1 12356777777777777
Q ss_pred HhcCCCCCHHHHHHHHHH----HHhcCCHHHHHHHHHHHHhCCCCCC-----------cccHHHHHHHHHHHHhCCCCCC
Q 038190 341 ESEGCIPDTSSYNTLINS----YSKIEKVEEALSLYGEMISMGVRPD-----------NSCILEAAELFRTLHNTKFELD 405 (531)
Q Consensus 341 ~~~g~~p~~~~~~~li~~----~~~~~~~~~a~~~~~~~~~~~~~~~-----------~~~~~~a~~~~~~~~~~~~~~~ 405 (531)
++. ++-...||.-+--. -.++.+...|.+++........++. .+.++.+..+++...+.++. |
T Consensus 393 l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~Pe-~ 470 (677)
T KOG1915|consen 393 LDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFSPE-N 470 (677)
T ss_pred Hhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcChH-h
Confidence 663 12233344333322 2456677777777766654322222 45667777777777777654 7
Q ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHhhhCC-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-------H------
Q 038190 406 LTVFNCLVDGLCKSWRLRSAWELFKKLPRYG-PEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK-------I------ 471 (531)
Q Consensus 406 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------i------ 471 (531)
..+|......-...|+.+.|..+|+-++... +..-...|.+.|+--...|.+++|..+++.+.+. |
T Consensus 471 c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h~kvWisFA~fe 550 (677)
T KOG1915|consen 471 CYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQHVKVWISFAKFE 550 (677)
T ss_pred hHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcccchHHHhHHHHh
Confidence 7888888888888899999999998887631 1223456777777777888999999998888776 0
Q ss_pred -------------------hhHHHHHHHHHHHHHc--CCCCCH---HHHHHHHHHHhccCChhHHHhhHHHhhhc
Q 038190 472 -------------------RECLKAIELLHKMAKR--YVKPDE---ITVSILEELLNKDENCHECMNLLPSFLSR 522 (531)
Q Consensus 472 -------------------~~~~~a~~~~~~~~~~--~~~~~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 522 (531)
.....|..+|+..... ...|-. ..+..+...-...|...+...+-.+||..
T Consensus 551 ~s~~~~~~~~~~~~~e~~~~~~~~AR~iferAn~~~k~~~~KeeR~~LLEaw~~~E~~~G~~~d~~~V~s~mPk~ 625 (677)
T KOG1915|consen 551 ASASEGQEDEDLAELEITDENIKRARKIFERANTYLKESTPKEERLMLLEAWKNMEETFGTEGDVERVQSKMPKK 625 (677)
T ss_pred ccccccccccchhhhhcchhHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCchhhHHHHHHhccHH
Confidence 2567788888776532 222221 12223333334456555555555555544
No 37
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.61 E-value=1.2e-14 Score=131.85 Aligned_cols=193 Identities=19% Similarity=0.192 Sum_probs=75.7
Q ss_pred hHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC-CCCCHHHHHHHHHHH
Q 038190 281 SYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEG-CIPDTSSYNTLINSY 359 (531)
Q Consensus 281 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g-~~p~~~~~~~li~~~ 359 (531)
.+..++.. ...+++++|.++++...+. .++...+..++..+...++++++..+++.+.... ...+...|..+...+
T Consensus 80 ~~~~l~~l-~~~~~~~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~ 156 (280)
T PF13429_consen 80 DYERLIQL-LQDGDPEEALKLAEKAYER--DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIY 156 (280)
T ss_dssp -----------------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHH
T ss_pred cccccccc-ccccccccccccccccccc--ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHH
Confidence 34444444 4556666666655554433 2344445555556666666666666666654322 223455555566666
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHhhhCCCCC
Q 038190 360 SKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEP 439 (531)
Q Consensus 360 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p 439 (531)
.+.|+.++|.+.+++..+.. |+ |....+.++..+...|+.+++..+++...+.. +.
T Consensus 157 ~~~G~~~~A~~~~~~al~~~--P~---------------------~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~ 212 (280)
T PF13429_consen 157 EQLGDPDKALRDYRKALELD--PD---------------------DPDARNALAWLLIDMGDYDEAREALKRLLKAA-PD 212 (280)
T ss_dssp HHCCHHHHHHHHHHHHHHH---TT----------------------HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HT
T ss_pred HHcCCHHHHHHHHHHHHHcC--CC---------------------CHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cC
Confidence 66666666666666665531 21 45566666666666666666666666655432 33
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChhHHHhhHHH
Q 038190 440 NVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLLPS 518 (531)
Q Consensus 440 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~i~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 518 (531)
|+..+..+..+|...|+.++|+..|++..+. .+.|+.+...+.+++...|+.++|.++.++
T Consensus 213 ~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~------------------~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~ 273 (280)
T PF13429_consen 213 DPDLWDALAAAYLQLGRYEEALEYLEKALKL------------------NPDDPLWLLAYADALEQAGRKDEALRLRRQ 273 (280)
T ss_dssp SCCHCHHHHHHHHHHT-HHHHHHHHHHHHHH------------------STT-HHHHHHHHHHHT--------------
T ss_pred HHHHHHHHHHHhccccccccccccccccccc------------------cccccccccccccccccccccccccccccc
Confidence 4455566666666666666665555543332 133555666666666666666666666554
No 38
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.61 E-value=5.3e-15 Score=134.08 Aligned_cols=262 Identities=15% Similarity=0.054 Sum_probs=101.5
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHhCC-CCCCHhhHHHHHHHHHccCCcchHHHHHHHHHHCCCCCChhhHHHHHHHHHhc
Q 038190 92 SLLGALAGKKYYVNFICLSERLNTIG-LLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQ 170 (531)
Q Consensus 92 ~li~~~~~~~~~~~a~~~~~~m~~~g-~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 170 (531)
.+...+.+.|++++|++++++..... .+.|...|..+...+...++++.|...++++...+.. +...+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccc
Confidence 45677778889999999886654443 2345555666666777788899999999988877644 56667777776 688
Q ss_pred CChHHHHHHHHHHHHcCCCCCCCCcHHhHHHHHHHHHhcCChhHHHHHHHHHhhCC-CCCCHhhHHHHHHHHHhcCChhh
Q 038190 171 GKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRG-IYPDAFVYNSLIRVYCCAVNWED 249 (531)
Q Consensus 171 g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g-~~p~~~~~~~li~~~~~~~~~~~ 249 (531)
+++++|.++++...+.. ++...+..++..+.+.++++++.++++.+.... .+.+...|..+...+.+.|+.++
T Consensus 91 ~~~~~A~~~~~~~~~~~------~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~ 164 (280)
T PF13429_consen 91 GDPEEALKLAEKAYERD------GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDK 164 (280)
T ss_dssp ---------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHH
T ss_pred ccccccccccccccccc------cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHH
Confidence 88888888887765431 255667778888888899999998888876532 34567778888888888888888
Q ss_pred hhcchHHHHHHHHHHHhCCCCCCccccCCHhhHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 038190 250 AKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGR 329 (531)
Q Consensus 250 a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~ 329 (531)
|.. .++...... +.|......++..+...|+.+++.++++...+.. +.|...+..+..+|...|+
T Consensus 165 A~~-------~~~~al~~~-------P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~ 229 (280)
T PF13429_consen 165 ALR-------DYRKALELD-------PDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGR 229 (280)
T ss_dssp HHH-------HHHHHHHH--------TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-
T ss_pred HHH-------HHHHHHHcC-------CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhccccc
Confidence 888 444444432 3356678888888888999888888887776653 4455677888888889999
Q ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 038190 330 IDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMIS 377 (531)
Q Consensus 330 ~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 377 (531)
.++|...|++..+.... |......+..++...|+.++|..+..+..+
T Consensus 230 ~~~Al~~~~~~~~~~p~-d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 230 YEEALEYLEKALKLNPD-DPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp HHHHHHHHHHHHHHSTT--HHHHHHHHHHHT-----------------
T ss_pred ccccccccccccccccc-cccccccccccccccccccccccccccccc
Confidence 99999999998876433 777778888899999999999888776543
No 39
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.60 E-value=4e-11 Score=115.89 Aligned_cols=369 Identities=14% Similarity=0.052 Sum_probs=257.9
Q ss_pred HHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCcchHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHH
Q 038190 97 LAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEA 176 (531)
Q Consensus 97 ~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 176 (531)
+...|++++|.+++.+.++.. +.+...|..|...|-+.|+.+++...+-.+-...+. |...|..+.....+.|.++.|
T Consensus 149 lfarg~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~-d~e~W~~ladls~~~~~i~qA 226 (895)
T KOG2076|consen 149 LFARGDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPK-DYELWKRLADLSEQLGNINQA 226 (895)
T ss_pred HHHhCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCC-ChHHHHHHHHHHHhcccHHHH
Confidence 334499999999999999886 667889999999999999999999888776665543 668999999999999999999
Q ss_pred HHHHHHHHHcCCCCCCCCcHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHhhHH----HHHHHHHhcCChhhhhc
Q 038190 177 SGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYN----SLIRVYCCAVNWEDAKG 252 (531)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~----~li~~~~~~~~~~~a~~ 252 (531)
.-.|.+.++. .| ++...+-.-...|-+.|+...|.+-|.++.....+.|..-+. .+++.+...++-+.|.+
T Consensus 227 ~~cy~rAI~~--~p---~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~ 301 (895)
T KOG2076|consen 227 RYCYSRAIQA--NP---SNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAK 301 (895)
T ss_pred HHHHHHHHhc--CC---cchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 9999999987 45 255555666778999999999999999998864322322222 23445555555555555
Q ss_pred chHHHHHHHHHHHhCCCCCCccccCCHhhHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCC--------------------
Q 038190 253 NTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIP-------------------- 312 (531)
Q Consensus 253 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-------------------- 312 (531)
.++....... -..+...++.++..+.+...++.|......+......+
T Consensus 302 -------~le~~~s~~~-----~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~ 369 (895)
T KOG2076|consen 302 -------ALEGALSKEK-----DEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCE 369 (895)
T ss_pred -------HHHHHHhhcc-----ccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhcccccccccc
Confidence 5555544221 23455678888999999999999998888776622222
Q ss_pred -------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 038190 313 -------DVVVYSSLIDGYCLMGRIDDARKLFVSIESEG--CIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD 383 (531)
Q Consensus 313 -------~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g--~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~ 383 (531)
+...+ .++-++......+....+...+.+.. +.-+...|.-+..+|...|++..|+.+|..+......-
T Consensus 370 ~~~~~s~~l~v~-rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~- 447 (895)
T KOG2076|consen 370 VGKELSYDLRVI-RLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQ- 447 (895)
T ss_pred CCCCCCccchhH-hHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCcccc-
Confidence 22221 11222233333344444444444444 33356678888889999999999999998887642221
Q ss_pred cccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHhhhCCCCCc-HHHHHHHHHHHHHcCCHHHHHH
Q 038190 384 NSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPN-VVTYTVMICGLCIEGGIEKAYD 462 (531)
Q Consensus 384 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~ 462 (531)
+...|--+..+|...|.+++|.+.|+..+.. .|+ ...--.|...+.+.|+.++|.+
T Consensus 448 ---------------------~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~--~p~~~D~Ri~Lasl~~~~g~~EkalE 504 (895)
T KOG2076|consen 448 ---------------------NAFVWYKLARCYMELGEYEEAIEFYEKVLIL--APDNLDARITLASLYQQLGNHEKALE 504 (895)
T ss_pred ---------------------chhhhHHHHHHHHHHhhHHHHHHHHHHHHhc--CCCchhhhhhHHHHHHhcCCHHHHHH
Confidence 5678888999999999999999999998874 444 3444566777888999999888
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChhHHHhhHHH
Q 038190 463 LLPDMEEKIRECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLLPS 518 (531)
Q Consensus 463 ~~~~~~~~i~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 518 (531)
.+..+... +.+ .....+..|+..........|...|+.++=.+....
T Consensus 505 tL~~~~~~--D~~-------~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi~t~~~ 551 (895)
T KOG2076|consen 505 TLEQIINP--DGR-------NAEACAWEPERRILAHRCDILFQVGKREEFINTAST 551 (895)
T ss_pred HHhcccCC--Ccc-------chhhccccHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 88764311 000 112234556666677788888888888875444333
No 40
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.60 E-value=8.9e-12 Score=118.26 Aligned_cols=285 Identities=9% Similarity=0.028 Sum_probs=218.1
Q ss_pred cCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHH--HHHHHHHccCCcchHH
Q 038190 65 EVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLN--ILMNCFCKMIGVSDAF 142 (531)
Q Consensus 65 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~--~li~~~~~~g~~~~a~ 142 (531)
.|+++.|.+.+....+....| ...|.....+..+.|+++.|...+.++.+. .|+..... .....+...|+++.|.
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p-~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al 173 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQP-VVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAAR 173 (398)
T ss_pred CCCHHHHHHHHHHHHhcccch-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHH
Confidence 579999998888776543332 223333345557999999999999999875 45654333 3366888999999999
Q ss_pred HHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCCCcH------HhHHHHHHHHHhcCChhHHH
Q 038190 143 VALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNV------ICYASIIDGLCKDGFVNKVR 216 (531)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~------~~~~~l~~~~~~~~~~~~a~ 216 (531)
..++.+.+..+. +..++..+...|.+.|++++|.+++..+.+....+ +.. .+|..++.......+.+...
T Consensus 174 ~~l~~~~~~~P~-~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~---~~~~~~l~~~a~~~l~~~~~~~~~~~~l~ 249 (398)
T PRK10747 174 HGVDKLLEVAPR-HPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGD---EEHRAMLEQQAWIGLMDQAMADQGSEGLK 249 (398)
T ss_pred HHHHHHHhcCCC-CHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCC---HHHHHHHHHHHHHHHHHHHHHhcCHHHHH
Confidence 999999988744 77888999999999999999999999999865432 121 23444455445556667777
Q ss_pred HHHHHHhhCCCCCCHhhHHHHHHHHHhcCChhhhhcchHHHHHHHHHHHhCCCCCCccccCCHhhHHHHHHHHhcCCCHH
Q 038190 217 VLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVD 296 (531)
Q Consensus 217 ~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 296 (531)
++++.+... .+.+......+...+...|+.++|.. +++...+.. ++... .++.+....++.+
T Consensus 250 ~~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~-------~L~~~l~~~--------~~~~l--~~l~~~l~~~~~~ 311 (398)
T PRK10747 250 RWWKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQ-------IILDGLKRQ--------YDERL--VLLIPRLKTNNPE 311 (398)
T ss_pred HHHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHH-------HHHHHHhcC--------CCHHH--HHHHhhccCCChH
Confidence 777776543 34477788889999999999999999 666666533 44422 2344455669999
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 038190 297 KAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMI 376 (531)
Q Consensus 297 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 376 (531)
++.+..+...+.. +-|...+..+...|.+.|++++|.+.|+...+. .|+...|..+...+.+.|+.++|.+++++-.
T Consensus 312 ~al~~~e~~lk~~-P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l 388 (398)
T PRK10747 312 QLEKVLRQQIKQH-GDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAMRRDGL 388 (398)
T ss_pred HHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 9999999988773 346677889999999999999999999999986 5889999999999999999999999998765
Q ss_pred h
Q 038190 377 S 377 (531)
Q Consensus 377 ~ 377 (531)
.
T Consensus 389 ~ 389 (398)
T PRK10747 389 M 389 (398)
T ss_pred h
Confidence 4
No 41
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.59 E-value=3.3e-11 Score=107.75 Aligned_cols=400 Identities=13% Similarity=0.035 Sum_probs=259.2
Q ss_pred CHHHHHHHHHHHHH---cCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCcchHHH
Q 038190 67 ELNDALCFFNYMIH---MQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFV 143 (531)
Q Consensus 67 ~~~~A~~~~~~~~~---~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~ 143 (531)
.....+..+++-.+ .+...|...+-...-.+.+.|....|++.|...+..- +-.=..|..|...+ .+.+
T Consensus 141 ~~~~~l~~L~~~le~~~~~~~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~-P~~W~AWleL~~li---t~~e---- 212 (559)
T KOG1155|consen 141 RINSELIELNKPLESKHCGGEKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRY-PWFWSAWLELSELI---TDIE---- 212 (559)
T ss_pred hhhhHHHHHhhHHHHHHhcccchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcC-CcchHHHHHHHHhh---chHH----
Confidence 44445544444333 3344455444444555668899999999998887542 22333444333333 2222
Q ss_pred HHHHHHHCCCCCC-hhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCCCcHHhHHHHHHHHHhcCChhHHHHHHHHH
Q 038190 144 ALGRILRKVFSPD-VVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDM 222 (531)
Q Consensus 144 ~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m 222 (531)
........+...+ ...--.+..++-...+.++++.-.+.....|... +...-+-...+.-...++++|+.+|+++
T Consensus 213 ~~~~l~~~l~~~~h~M~~~F~~~a~~el~q~~e~~~k~e~l~~~gf~~----~~~i~~~~A~~~y~~rDfD~a~s~Feei 288 (559)
T KOG1155|consen 213 ILSILVVGLPSDMHWMKKFFLKKAYQELHQHEEALQKKERLSSVGFPN----SMYIKTQIAAASYNQRDFDQAESVFEEI 288 (559)
T ss_pred HHHHHHhcCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCc----cHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 2223322221111 1111234566777778888888888887776543 3444444444556678899999999998
Q ss_pred hhCCC--CCCHhhHHHHHHHHHhcCChhhhhcchHHHHHHHHHHHhCCCCCCccccCCHhhHHHHHHHHhcCCCHHHHHH
Q 038190 223 KGRGI--YPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKE 300 (531)
Q Consensus 223 ~~~g~--~p~~~~~~~li~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~ 300 (531)
.+... --|..+|+.++-.-....+ +. .+.+-...- .+-...|...+.+.|.-.++.++|..
T Consensus 289 ~knDPYRl~dmdlySN~LYv~~~~sk----Ls-------~LA~~v~~i------dKyR~ETCCiIaNYYSlr~eHEKAv~ 351 (559)
T KOG1155|consen 289 RKNDPYRLDDMDLYSNVLYVKNDKSK----LS-------YLAQNVSNI------DKYRPETCCIIANYYSLRSEHEKAVM 351 (559)
T ss_pred HhcCCCcchhHHHHhHHHHHHhhhHH----HH-------HHHHHHHHh------ccCCccceeeehhHHHHHHhHHHHHH
Confidence 87621 1166777776643322111 11 111111111 23345678888888888889999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 038190 301 LFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGV 380 (531)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~ 380 (531)
+|+...+.+.. ....|+.+.+-|....+...|..-++...+-++. |-..|-.|.++|.-.+.+.-|+-.|++..+ .
T Consensus 352 YFkRALkLNp~-~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~-DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~--~ 427 (559)
T KOG1155|consen 352 YFKRALKLNPK-YLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPR-DYRAWYGLGQAYEIMKMHFYALYYFQKALE--L 427 (559)
T ss_pred HHHHHHhcCcc-hhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCch-hHHHHhhhhHHHHHhcchHHHHHHHHHHHh--c
Confidence 99988887422 4566777778899999999999999998887654 888889999999999999999999988876 4
Q ss_pred CCCcccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHcCCHHHH
Q 038190 381 RPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKA 460 (531)
Q Consensus 381 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A 460 (531)
+|+ |...|.+|..+|.+.++.++|.+.|.+....| ..+...+..+...|-+.++..+|
T Consensus 428 kPn---------------------DsRlw~aLG~CY~kl~~~~eAiKCykrai~~~-dte~~~l~~LakLye~l~d~~eA 485 (559)
T KOG1155|consen 428 KPN---------------------DSRLWVALGECYEKLNRLEEAIKCYKRAILLG-DTEGSALVRLAKLYEELKDLNEA 485 (559)
T ss_pred CCC---------------------chHHHHHHHHHHHHhccHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHHHHhHHHH
Confidence 554 88899999999999999999999999988866 33667888899999999999999
Q ss_pred HHHHHHHHHHH-------hhHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhccCChhHHHhhHHHhhhcc
Q 038190 461 YDLLPDMEEKI-------RECLKAIELLHKMAKRYVKPD-EITVSILEELLNKDENCHECMNLLPSFLSRN 523 (531)
Q Consensus 461 ~~~~~~~~~~i-------~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 523 (531)
...|++..+.. ....+|+..+..-...-..-+ ...|.. .++.-.-..+||..+++++...-
T Consensus 486 a~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~--~~~~~~~e~eeak~LlReir~~~ 554 (559)
T KOG1155|consen 486 AQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYAT--LVLKGETECEEAKALLREIRKIQ 554 (559)
T ss_pred HHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHH--HHhcCCchHHHHHHHHHHHHHhc
Confidence 99888887752 335555555444332111112 233333 33333556788999998877653
No 42
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.59 E-value=1.1e-11 Score=118.36 Aligned_cols=289 Identities=9% Similarity=-0.035 Sum_probs=209.3
Q ss_pred CcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHh--hHHHHHHHHHccCCcchH
Q 038190 64 GEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFV--SLNILMNCFCKMIGVSDA 141 (531)
Q Consensus 64 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~--~~~~li~~~~~~g~~~~a 141 (531)
..|+++.|.+.+....+..+.| ...+-....+..+.|+++.|.+.+.+..+.. |+.. ........+...|+++.|
T Consensus 96 ~~g~~~~A~~~l~~~~~~~~~~-~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~--p~~~l~~~~~~a~l~l~~~~~~~A 172 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADHAAEP-VLNLIKAAEAAQQRGDEARANQHLEEAAELA--GNDNILVEIARTRILLAQNELHAA 172 (409)
T ss_pred hCCCHHHHHHHHHHHhhcCCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CcCchHHHHHHHHHHHHCCCHHHH
Confidence 3679999999999987765442 3344455677888999999999999987653 4443 334457788899999999
Q ss_pred HHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCCCcHHhHH----HHHHHHHhcCChhHHHH
Q 038190 142 FVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYA----SIIDGLCKDGFVNKVRV 217 (531)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~----~l~~~~~~~~~~~~a~~ 217 (531)
...++.+.+..+. +..++..+...+...|++++|.+++..+.+.+..+ ...+. .........+..++..+
T Consensus 173 l~~l~~l~~~~P~-~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~-----~~~~~~l~~~a~~~~l~~~~~~~~~~ 246 (409)
T TIGR00540 173 RHGVDKLLEMAPR-HKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFD-----DEEFADLEQKAEIGLLDEAMADEGID 246 (409)
T ss_pred HHHHHHHHHhCCC-CHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCC-----HHHHHHHHHHHHHHHHHHHHHhcCHH
Confidence 9999999998644 67788899999999999999999999999875432 22221 11111123333333344
Q ss_pred HHHHHhhCC---CCCCHhhHHHHHHHHHhcCChhhhhcchHHHHHHHHHHHhCCCCCCccccCCHhh---HHHHHHHHhc
Q 038190 218 LFLDMKGRG---IYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLS---YCSIINSLCK 291 (531)
Q Consensus 218 ~~~~m~~~g---~~p~~~~~~~li~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~---~~~ll~~~~~ 291 (531)
.+..+.+.. .+.+...+..+...+...|+.++|.. +++...+.. ||... ..........
T Consensus 247 ~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~-------~l~~~l~~~--------pd~~~~~~~~l~~~~~l~ 311 (409)
T TIGR00540 247 GLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQE-------IIFDGLKKL--------GDDRAISLPLCLPIPRLK 311 (409)
T ss_pred HHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHH-------HHHHHHhhC--------CCcccchhHHHHHhhhcC
Confidence 555444431 11377888888999999999999888 777776654 33331 1222223344
Q ss_pred CCCHHHHHHHHHHHHhCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 038190 292 DVLVDKAKELFLDMKSRGIIPDV--VVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEAL 369 (531)
Q Consensus 292 ~~~~~~a~~~~~~~~~~~~~~~~--~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~~~~~~a~ 369 (531)
.++.+.+.+.++...+.. +-|. ....++...+.+.|++++|.+.|+........|+...+..+...+.+.|+.++|.
T Consensus 312 ~~~~~~~~~~~e~~lk~~-p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~ 390 (409)
T TIGR00540 312 PEDNEKLEKLIEKQAKNV-DDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAA 390 (409)
T ss_pred CCChHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 578888999998877762 2244 5667888999999999999999995444344688888999999999999999999
Q ss_pred HHHHHHHh
Q 038190 370 SLYGEMIS 377 (531)
Q Consensus 370 ~~~~~~~~ 377 (531)
++|++...
T Consensus 391 ~~~~~~l~ 398 (409)
T TIGR00540 391 AMRQDSLG 398 (409)
T ss_pred HHHHHHHH
Confidence 99988643
No 43
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.58 E-value=3.2e-10 Score=101.58 Aligned_cols=354 Identities=11% Similarity=0.010 Sum_probs=253.0
Q ss_pred CCCCCHhhHHHHHHHHHccCCcchHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCCCcH
Q 038190 117 GLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNV 196 (531)
Q Consensus 117 g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 196 (531)
+...|...+-.....+-+.|....|...|...... -+..|.+-+....-..+.+.+..+...+ ..+ -..
T Consensus 159 ~~~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~----~P~~W~AWleL~~lit~~e~~~~l~~~l-----~~~--~h~ 227 (559)
T KOG1155|consen 159 GGEKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNR----YPWFWSAWLELSELITDIEILSILVVGL-----PSD--MHW 227 (559)
T ss_pred cccchhHHHHHHHHHHHhhchHHHHHHHHHHHHhc----CCcchHHHHHHHHhhchHHHHHHHHhcC-----ccc--chH
Confidence 44567666666666777889999999999888754 2334444443333333333332222111 110 011
Q ss_pred HhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChhhhhcchHHHHHHHHHHHhCCCCCCcccc
Q 038190 197 ICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICH 276 (531)
Q Consensus 197 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~ 276 (531)
..---+..++-.....+++..-.......|++-+...-+....+.....+++.|+. +|+++.+.++= -.
T Consensus 228 M~~~F~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s-------~Feei~knDPY----Rl 296 (559)
T KOG1155|consen 228 MKKFFLKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAES-------VFEEIRKNDPY----RL 296 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHH-------HHHHHHhcCCC----cc
Confidence 22223456677777889999999999999988777766767777788899999999 99999887621 12
Q ss_pred CCHhhHHHHHHHHhcCCCHH-HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHH
Q 038190 277 PDVLSYCSIINSLCKDVLVD-KAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTL 355 (531)
Q Consensus 277 ~~~~~~~~ll~~~~~~~~~~-~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~l 355 (531)
-|..+|+.++-.-....+.. .|..+++ + -+--+.|+.++.+.|.-.++.++|...|++.++.+.. ....|+.+
T Consensus 297 ~dmdlySN~LYv~~~~skLs~LA~~v~~-i----dKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~-~~~aWTLm 370 (559)
T KOG1155|consen 297 DDMDLYSNVLYVKNDKSKLSYLAQNVSN-I----DKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPK-YLSAWTLM 370 (559)
T ss_pred hhHHHHhHHHHHHhhhHHHHHHHHHHHH-h----ccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcc-hhHHHHHh
Confidence 35678887775543322221 1222221 1 1234578888889999999999999999999998655 67789999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHhhhC
Q 038190 356 INSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRY 435 (531)
Q Consensus 356 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 435 (531)
..-|....+...|++-+++.++-+ | .|-..|-.|.++|.-.+...-|+-+|++..+.
T Consensus 371 GHEyvEmKNt~AAi~sYRrAvdi~--p---------------------~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~ 427 (559)
T KOG1155|consen 371 GHEYVEMKNTHAAIESYRRAVDIN--P---------------------RDYRAWYGLGQAYEIMKMHFYALYYFQKALEL 427 (559)
T ss_pred hHHHHHhcccHHHHHHHHHHHhcC--c---------------------hhHHHHhhhhHHHHHhcchHHHHHHHHHHHhc
Confidence 999999999999999999998743 3 28889999999999999999999999999985
Q ss_pred CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-----------------HhhHHHHHHHHHHHHHc----CCCCC--
Q 038190 436 GPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK-----------------IRECLKAIELLHKMAKR----YVKPD-- 492 (531)
Q Consensus 436 g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----------------i~~~~~a~~~~~~~~~~----~~~~~-- 492 (531)
. +-|...|.+|..+|.+.++.++|++-|.....- +++.++|.+++++-++. |...+
T Consensus 428 k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t 506 (559)
T KOG1155|consen 428 K-PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDET 506 (559)
T ss_pred C-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHH
Confidence 2 337899999999999999999999999887664 48888999998877642 33322
Q ss_pred HHHHHHHHHHHhccCChhHHHhhHHHhhhc
Q 038190 493 EITVSILEELLNKDENCHECMNLLPSFLSR 522 (531)
Q Consensus 493 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 522 (531)
.....-|..-+.+.+++++|.........-
T Consensus 507 ~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~ 536 (559)
T KOG1155|consen 507 IKARLFLAEYFKKMKDFDEASYYATLVLKG 536 (559)
T ss_pred HHHHHHHHHHHHhhcchHHHHHHHHHHhcC
Confidence 233334677788999999998876554443
No 44
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.57 E-value=1.2e-09 Score=101.98 Aligned_cols=420 Identities=10% Similarity=-0.023 Sum_probs=314.1
Q ss_pred CHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCcchHHHHHH
Q 038190 67 ELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALG 146 (531)
Q Consensus 67 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 146 (531)
+...=.+++...++.-|. ++..|...+. ..+.+.|.-++.+..+.- +.+...| .++++..-++.|..+++
T Consensus 361 ~~~~K~RVlRKALe~iP~-sv~LWKaAVe----lE~~~darilL~rAvecc-p~s~dLw----lAlarLetYenAkkvLN 430 (913)
T KOG0495|consen 361 DTKNKKRVLRKALEHIPR-SVRLWKAAVE----LEEPEDARILLERAVECC-PQSMDLW----LALARLETYENAKKVLN 430 (913)
T ss_pred HHHHHHHHHHHHHHhCCc-hHHHHHHHHh----ccChHHHHHHHHHHHHhc-cchHHHH----HHHHHHHHHHHHHHHHH
Confidence 556667788888886555 7777776654 356677999999998763 4444444 45667788899999999
Q ss_pred HHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCCCcHHhHHHHHHHHHhcCChhHHHHHHHHHhhCC
Q 038190 147 RILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRG 226 (531)
Q Consensus 147 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g 226 (531)
...+. ++.+..+|.+-...=-..|+.+...+++++-+..-...++..+...|-.=...|-..|..--+..+.......|
T Consensus 431 kaRe~-iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigig 509 (913)
T KOG0495|consen 431 KAREI-IPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIG 509 (913)
T ss_pred HHHhh-CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhc
Confidence 99876 56688899888888888999999999887755432233333588889888889999999999999999998887
Q ss_pred CCCC--HhhHHHHHHHHHhcCChhhhhcchHHHHHHHHHHHhCCCCCCccccCCHhhHHHHHHHHhcCCCHHHHHHHHHH
Q 038190 227 IYPD--AFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLD 304 (531)
Q Consensus 227 ~~p~--~~~~~~li~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 304 (531)
+.-. ..||..-...|.+.+.++-+...|..++++ .+.+...|......--..|..+....+|++
T Consensus 510 vEeed~~~tw~~da~~~~k~~~~~carAVya~alqv--------------fp~k~slWlra~~~ek~hgt~Esl~Allqk 575 (913)
T KOG0495|consen 510 VEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQV--------------FPCKKSLWLRAAMFEKSHGTRESLEALLQK 575 (913)
T ss_pred cccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhh--------------ccchhHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 7532 468888888999999999999955555554 345666787777777788999999999999
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-
Q 038190 305 MKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD- 383 (531)
Q Consensus 305 ~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~- 383 (531)
.... .+-....|-....-+-..|+...|..++..+.+.... +...|-.-+..-.....++.|..+|.+....+-...
T Consensus 576 av~~-~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pn-seeiwlaavKle~en~e~eraR~llakar~~sgTeRv 653 (913)
T KOG0495|consen 576 AVEQ-CPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPN-SEEIWLAAVKLEFENDELERARDLLAKARSISGTERV 653 (913)
T ss_pred HHHh-CCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCC-cHHHHHHHHHHhhccccHHHHHHHHHHHhccCCcchh
Confidence 9887 2334455666666777789999999999999988655 778888889999999999999999999876433222
Q ss_pred ----------cccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHH
Q 038190 384 ----------NSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCI 453 (531)
Q Consensus 384 ----------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~ 453 (531)
.+..++|++++++..+.- +.-...|-.+.+.+-+.++++.|.+.|..-.+. ++-....|-.+...--+
T Consensus 654 ~mKs~~~er~ld~~eeA~rllEe~lk~f-p~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ipLWllLakleEk 731 (913)
T KOG0495|consen 654 WMKSANLERYLDNVEEALRLLEEALKSF-PDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK-CPNSIPLWLLLAKLEEK 731 (913)
T ss_pred hHHHhHHHHHhhhHHHHHHHHHHHHHhC-CchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CCCCchHHHHHHHHHHH
Confidence 677899999998888653 324568899999999999999999999887764 33345677777777788
Q ss_pred cCCHHHHHHHHHHHHHH-----------------HhhHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChhHHHhhH
Q 038190 454 EGGIEKAYDLLPDMEEK-----------------IRECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLL 516 (531)
Q Consensus 454 ~g~~~~A~~~~~~~~~~-----------------i~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 516 (531)
.|++-+|..+|++..-+ .|..+.|..+..+.++. ++.+...|..-|.+..+.++-.+..+.+
T Consensus 732 ~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQe-cp~sg~LWaEaI~le~~~~rkTks~DAL 810 (913)
T KOG0495|consen 732 DGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELLMAKALQE-CPSSGLLWAEAIWLEPRPQRKTKSIDAL 810 (913)
T ss_pred hcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCccchhHHHHHHhccCcccchHHHHHH
Confidence 99999999999987665 27777777777666643 2223344444444444444433333333
No 45
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.56 E-value=4.8e-11 Score=101.82 Aligned_cols=293 Identities=15% Similarity=0.155 Sum_probs=186.3
Q ss_pred CCcchHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCCCc--HHhHHHHHHHHHhcCChh
Q 038190 136 IGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPN--VICYASIIDGLCKDGFVN 213 (531)
Q Consensus 136 g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~ 213 (531)
.+.++|.+.|-+|.+...+ +..+.-+|.+.|-+.|..|.|+++...+.. .|+..-+ ..+...|..-|...|-++
T Consensus 49 ~Q~dKAvdlF~e~l~~d~~-t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~---spdlT~~qr~lAl~qL~~Dym~aGl~D 124 (389)
T COG2956 49 NQPDKAVDLFLEMLQEDPE-TFEAHLTLGNLFRSRGEVDRAIRIHQTLLE---SPDLTFEQRLLALQQLGRDYMAAGLLD 124 (389)
T ss_pred cCcchHHHHHHHHHhcCch-hhHHHHHHHHHHHhcchHHHHHHHHHHHhc---CCCCchHHHHHHHHHHHHHHHHhhhhh
Confidence 4666677777666664322 444555666667777777777777666665 3322111 123344556666777777
Q ss_pred HHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChhhhhcchHHHHHHHHHHHhCCCCCCccccCCHhhHHHHHHHHhcCC
Q 038190 214 KVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDV 293 (531)
Q Consensus 214 ~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ 293 (531)
.|+.+|..+.+.|.- -......++..|-...+|++|+. .-+.+.+.+++... .-=...|..+...+....
T Consensus 125 RAE~~f~~L~de~ef-a~~AlqqLl~IYQ~treW~KAId-------~A~~L~k~~~q~~~--~eIAqfyCELAq~~~~~~ 194 (389)
T COG2956 125 RAEDIFNQLVDEGEF-AEGALQQLLNIYQATREWEKAID-------VAERLVKLGGQTYR--VEIAQFYCELAQQALASS 194 (389)
T ss_pred HHHHHHHHHhcchhh-hHHHHHHHHHHHHHhhHHHHHHH-------HHHHHHHcCCccch--hHHHHHHHHHHHHHhhhh
Confidence 777777777664322 33445556666666666666555 55555554421100 000234666677777788
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 038190 294 LVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYG 373 (531)
Q Consensus 294 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~ 373 (531)
+.+.|..++.+..+.+.+ .+..--.+.+.+...|+++.|.+.++.+.+.+..--..+...|..+|.+.|+.++....+.
T Consensus 195 ~~d~A~~~l~kAlqa~~~-cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~ 273 (389)
T COG2956 195 DVDRARELLKKALQADKK-CVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLR 273 (389)
T ss_pred hHHHHHHHHHHHHhhCcc-ceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 889999999988876322 3444455667888999999999999999998766556778889999999999999999999
Q ss_pred HHHhCCCCCCcccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHH
Q 038190 374 EMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCI 453 (531)
Q Consensus 374 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~ 453 (531)
++.+... ....-..+.+.-....-.+.|..++.+-+.. .|+...+..+++.-..
T Consensus 274 ~~~~~~~------------------------g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l~ 327 (389)
T COG2956 274 RAMETNT------------------------GADAELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHLA 327 (389)
T ss_pred HHHHccC------------------------CccHHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhhc
Confidence 9887543 2334444444445555566676666555543 7899999988887654
Q ss_pred c---CCHHHHHHHHHHHHH
Q 038190 454 E---GGIEKAYDLLPDMEE 469 (531)
Q Consensus 454 ~---g~~~~A~~~~~~~~~ 469 (531)
. |...+.+-+++.|..
T Consensus 328 daeeg~~k~sL~~lr~mvg 346 (389)
T COG2956 328 DAEEGRAKESLDLLRDMVG 346 (389)
T ss_pred cccccchhhhHHHHHHHHH
Confidence 3 334444444544443
No 46
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.56 E-value=3.9e-11 Score=102.40 Aligned_cols=298 Identities=12% Similarity=0.082 Sum_probs=204.8
Q ss_pred hcCChHHHHHHHHHHHHcCCCCCCCCcHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChh
Q 038190 169 MQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWE 248 (531)
Q Consensus 169 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~ 248 (531)
-+++.++|.++|-+|.+. +|. +..+--+|.+.|-+.|..+.|+++...+.++ || .|+..-+.+....|+--
T Consensus 47 Ls~Q~dKAvdlF~e~l~~--d~~---t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s---pd-lT~~qr~lAl~qL~~Dy 117 (389)
T COG2956 47 LSNQPDKAVDLFLEMLQE--DPE---TFEAHLTLGNLFRSRGEVDRAIRIHQTLLES---PD-LTFEQRLLALQQLGRDY 117 (389)
T ss_pred hhcCcchHHHHHHHHHhc--Cch---hhHHHHHHHHHHHhcchHHHHHHHHHHHhcC---CC-CchHHHHHHHHHHHHHH
Confidence 357889999999999985 332 5667778999999999999999999998876 33 34444333433443333
Q ss_pred hhhcchHHHHHHHHHHHhCCCCCCccccCCHhhHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHH
Q 038190 249 DAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPD----VVVYSSLIDGY 324 (531)
Q Consensus 249 ~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~ll~~~ 324 (531)
.+.+.++.|.++|..+.+.+ ..-..+...++..|-...+|++|+++-+++.+.+-.+. ...|.-|...+
T Consensus 118 m~aGl~DRAE~~f~~L~de~-------efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~ 190 (389)
T COG2956 118 MAAGLLDRAEDIFNQLVDEG-------EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQA 190 (389)
T ss_pred HHhhhhhHHHHHHHHHhcch-------hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHH
Confidence 34445555555999888765 23455677889999999999999999998887754433 23456666666
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHhCCCCC
Q 038190 325 CLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFEL 404 (531)
Q Consensus 325 ~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 404 (531)
....+++.|..++.+..+.+.+ .+..--.+.+.+...|+++.|++.|+...+.+...
T Consensus 191 ~~~~~~d~A~~~l~kAlqa~~~-cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~y---------------------- 247 (389)
T COG2956 191 LASSDVDRARELLKKALQADKK-CVRASIILGRVELAKGDYQKAVEALERVLEQNPEY---------------------- 247 (389)
T ss_pred hhhhhHHHHHHHHHHHHhhCcc-ceehhhhhhHHHHhccchHHHHHHHHHHHHhChHH----------------------
Confidence 6778899999999998887543 33444456677888899999999998888764322
Q ss_pred CHHHHHHHHHHHHcCCChHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 038190 405 DLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECLKAIELLHKM 484 (531)
Q Consensus 405 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~i~~~~~a~~~~~~~ 484 (531)
-..+...|..+|...|+.++....+.++.+. .++...-..+...-....-.+.|..++.+ -
T Consensus 248 l~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~--~~g~~~~l~l~~lie~~~G~~~Aq~~l~~-----------------Q 308 (389)
T COG2956 248 LSEVLEMLYECYAQLGKPAEGLNFLRRAMET--NTGADAELMLADLIELQEGIDAAQAYLTR-----------------Q 308 (389)
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHc--cCCccHHHHHHHHHHHhhChHHHHHHHHH-----------------H
Confidence 3567788899999999999999999988874 33333334444443333334444433332 2
Q ss_pred HHcCCCCCHHHHHHHHHHHhc---cCChhHHHhhHHHhhhcchhh
Q 038190 485 AKRYVKPDEITVSILEELLNK---DENCHECMNLLPSFLSRNQEE 526 (531)
Q Consensus 485 ~~~~~~~~~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~~~~~~ 526 (531)
+. -+|+...+..+++.-.. .|...+-..++++|..+-...
T Consensus 309 l~--r~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvge~l~~ 351 (389)
T COG2956 309 LR--RKPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVGEQLRR 351 (389)
T ss_pred Hh--hCCcHHHHHHHHHhhhccccccchhhhHHHHHHHHHHHHhh
Confidence 22 26888877777776653 455777777888877654443
No 47
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.55 E-value=8e-11 Score=103.66 Aligned_cols=292 Identities=11% Similarity=0.042 Sum_probs=183.6
Q ss_pred ccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCcchHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHH
Q 038190 99 GKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASG 178 (531)
Q Consensus 99 ~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 178 (531)
-.|+|.+|.++..+-.+.+ +-....|..-..+.-+.|+.+.+-.++.++.+....++..+.-+..+.....|+.+.|..
T Consensus 96 ~eG~~~qAEkl~~rnae~~-e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~ 174 (400)
T COG3071 96 FEGDFQQAEKLLRRNAEHG-EQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARE 174 (400)
T ss_pred hcCcHHHHHHHHHHhhhcC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHH
Confidence 4699999999999988887 334445666677888999999999999999887556777888888999999999999999
Q ss_pred HHHHHHHcCCCCCCCCcHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChhhhhcchHHHH
Q 038190 179 LFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAAL 258 (531)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~a~ 258 (531)
-++++...+ | .+........++|.+.|++.....++..|.+.|.--+...-.
T Consensus 175 ~v~~ll~~~--p---r~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~----------------------- 226 (400)
T COG3071 175 NVDQLLEMT--P---RHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAAR----------------------- 226 (400)
T ss_pred HHHHHHHhC--c---CChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHH-----------------------
Confidence 999998874 3 267889999999999999999999999999987654432110
Q ss_pred HHHHHHHhCCCCCCccccCCHhhHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 038190 259 ELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFV 338 (531)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~ 338 (531)
+ ...+|..+++-....+..+.-...|+..... .+-++..-..++.-+.++|+.++|.++..
T Consensus 227 --l----------------e~~a~~glL~q~~~~~~~~gL~~~W~~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~ 287 (400)
T COG3071 227 --L----------------EQQAWEGLLQQARDDNGSEGLKTWWKNQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIE 287 (400)
T ss_pred --H----------------HHHHHHHHHHHHhccccchHHHHHHHhccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHH
Confidence 0 0123333443333333333333344433322 22234444445555555555555555555
Q ss_pred HHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc
Q 038190 339 SIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCK 418 (531)
Q Consensus 339 ~~~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 418 (531)
+..+++..|. -...-.+.+-++...-.+..+.-.... | -++..+.+|...|.+
T Consensus 288 ~~Lk~~~D~~----L~~~~~~l~~~d~~~l~k~~e~~l~~h--~---------------------~~p~L~~tLG~L~~k 340 (400)
T COG3071 288 DALKRQWDPR----LCRLIPRLRPGDPEPLIKAAEKWLKQH--P---------------------EDPLLLSTLGRLALK 340 (400)
T ss_pred HHHHhccChh----HHHHHhhcCCCCchHHHHHHHHHHHhC--C---------------------CChhHHHHHHHHHHH
Confidence 5555544333 111223344444444444444333211 1 133455555566666
Q ss_pred CCChHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 038190 419 SWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDM 467 (531)
Q Consensus 419 ~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 467 (531)
.+.+.+|...|+...+ ..|+..+|+.+..++.+.|+..+|.+.+++.
T Consensus 341 ~~~w~kA~~~leaAl~--~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~ 387 (400)
T COG3071 341 NKLWGKASEALEAALK--LRPSASDYAELADALDQLGEPEEAEQVRREA 387 (400)
T ss_pred hhHHHHHHHHHHHHHh--cCCChhhHHHHHHHHHHcCChHHHHHHHHHH
Confidence 6666666666655544 2455556666666666666666555555544
No 48
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.53 E-value=5.6e-12 Score=117.84 Aligned_cols=282 Identities=15% Similarity=0.072 Sum_probs=217.5
Q ss_pred CHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCC--CCCCHhhHHHHHHHHHccCCcchHHHH
Q 038190 67 ELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIG--LLPDFVSLNILMNCFCKMIGVSDAFVA 144 (531)
Q Consensus 67 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g--~~~~~~~~~~li~~~~~~g~~~~a~~~ 144 (531)
+..+|+.+|..+...... +......+..+|...+++++|..+|+.+.+.. ..-+.++|.+++.-+-+ +-++.+
T Consensus 334 ~~~~A~~~~~klp~h~~n-t~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~----~v~Ls~ 408 (638)
T KOG1126|consen 334 NCREALNLFEKLPSHHYN-TGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD----EVALSY 408 (638)
T ss_pred HHHHHHHHHHhhHHhcCC-chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh----hHHHHH
Confidence 578899999996554333 34566778889999999999999999997653 11356678877765533 223333
Q ss_pred HH-HHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCCCcHHhHHHHHHHHHhcCChhHHHHHHHHHh
Q 038190 145 LG-RILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMK 223 (531)
Q Consensus 145 ~~-~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 223 (531)
+. .+++.. +-.+.+|-++..+|.-.++.+.|++.|++.++. +|+ ...+|+.+..-+.....+|.|...|+...
T Consensus 409 Laq~Li~~~-~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQl--dp~---faYayTLlGhE~~~~ee~d~a~~~fr~Al 482 (638)
T KOG1126|consen 409 LAQDLIDTD-PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQL--DPR---FAYAYTLLGHESIATEEFDKAMKSFRKAL 482 (638)
T ss_pred HHHHHHhhC-CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhcc--CCc---cchhhhhcCChhhhhHHHHhHHHHHHhhh
Confidence 32 233332 347789999999999999999999999999986 442 78899999999999999999999999887
Q ss_pred hCCCCCCHhhHHH---HHHHHHhcCChhhhhcchHHHHHHHHHHHhCCCCCCccccCCHhhHHHHHHHHhcCCCHHHHHH
Q 038190 224 GRGIYPDAFVYNS---LIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKE 300 (531)
Q Consensus 224 ~~g~~p~~~~~~~---li~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~ 300 (531)
.. |...|++ +.-.|.+.++++.|+- .|+....-+ +.+.+....+...+.+.|+.++|++
T Consensus 483 ~~----~~rhYnAwYGlG~vy~Kqek~e~Ae~-------~fqkA~~IN-------P~nsvi~~~~g~~~~~~k~~d~AL~ 544 (638)
T KOG1126|consen 483 GV----DPRHYNAWYGLGTVYLKQEKLEFAEF-------HFQKAVEIN-------PSNSVILCHIGRIQHQLKRKDKALQ 544 (638)
T ss_pred cC----CchhhHHHHhhhhheeccchhhHHHH-------HHHhhhcCC-------ccchhHHhhhhHHHHHhhhhhHHHH
Confidence 64 6666665 5567889998888888 555554443 4567778888889999999999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 038190 301 LFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMG 379 (531)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 379 (531)
++++......+ |+..--.....+...+++++|...++++.+.-+. +...|..+...|.+.|+.+.|+.-|.-+.+..
T Consensus 545 ~~~~A~~ld~k-n~l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~-es~v~~llgki~k~~~~~~~Al~~f~~A~~ld 621 (638)
T KOG1126|consen 545 LYEKAIHLDPK-NPLCKYHRASILFSLGRYVEALQELEELKELVPQ-ESSVFALLGKIYKRLGNTDLALLHFSWALDLD 621 (638)
T ss_pred HHHHHHhcCCC-CchhHHHHHHHHHhhcchHHHHHHHHHHHHhCcc-hHHHHHHHHHHHHHHccchHHHHhhHHHhcCC
Confidence 99999877543 5555555666777889999999999999987332 56678888899999999999999888887644
No 49
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.52 E-value=2.2e-11 Score=108.43 Aligned_cols=408 Identities=15% Similarity=0.076 Sum_probs=238.9
Q ss_pred HHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHH-HHHHHHHccCCcchHHHHHHHHHHCCCCCChh----hHHHHHHHH
Q 038190 93 LLGALAGKKYYVNFICLSERLNTIGLLPDFVSLN-ILMNCFCKMIGVSDAFVALGRILRKVFSPDVV----TLGCLIRGL 167 (531)
Q Consensus 93 li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~-~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~----~~~~li~~~ 167 (531)
|..-|..+....+|+..|+-+++...-|+.-... .+.+.+.+...+..|++.|+..+..-+..+.. ..+.+.-.+
T Consensus 207 laqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvtf 286 (840)
T KOG2003|consen 207 LAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTF 286 (840)
T ss_pred HHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeE
Confidence 3344556666788999999888887777765433 34566778889999999999888774443333 445555667
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCCCCCcHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCH------------hhHH
Q 038190 168 CMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDA------------FVYN 235 (531)
Q Consensus 168 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~------------~~~~ 235 (531)
.+.|.++.|+.-|+...+. . |+..+-..|+-++...|+-++..+.|.+|......||. ...+
T Consensus 287 iq~gqy~dainsfdh~m~~--~----pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~ 360 (840)
T KOG2003|consen 287 IQAGQYDDAINSFDHCMEE--A----PNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLN 360 (840)
T ss_pred EecccchhhHhhHHHHHHh--C----ccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHH
Confidence 8899999999999999875 3 36665555555666779999999999999765333332 2222
Q ss_pred HHHH-----HHHhcCChhhhhcchHHHHHHHHHHHhCCCCCCccccCCHh---------------------hHHHHHHHH
Q 038190 236 SLIR-----VYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVL---------------------SYCSIINSL 289 (531)
Q Consensus 236 ~li~-----~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~ll~~~ 289 (531)
..|. -.-+. +...|.+..-.+.++..-+ +.|+.. .--.-...+
T Consensus 361 eai~nd~lk~~ek~-~ka~aek~i~ta~kiiapv----------i~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~ 429 (840)
T KOG2003|consen 361 EAIKNDHLKNMEKE-NKADAEKAIITAAKIIAPV----------IAPDFAAGCDWCLESLKASQHAELAIDLEINKAGEL 429 (840)
T ss_pred HHHhhHHHHHHHHh-hhhhHHHHHHHHHHHhccc----------cccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHH
Confidence 2221 11111 1111222111111111111 222211 001123356
Q ss_pred hcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH-HHh-cCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHH
Q 038190 290 CKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDG-YCL-MGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEE 367 (531)
Q Consensus 290 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~-~~~-~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~~~~~~ 367 (531)
.++|+++.|.++++-..+..-+.-....+.|-.. |.+ ..++..|...-+...... .-+......-...-...|++++
T Consensus 430 lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd~dk 508 (840)
T KOG2003|consen 430 LKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGDLDK 508 (840)
T ss_pred HhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCcHHH
Confidence 7899999999999887765332222222222221 222 224445554444433221 0111111111122233466666
Q ss_pred HHHHHHHHHhCCCCCC------------cccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHhhhC
Q 038190 368 ALSLYGEMISMGVRPD------------NSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRY 435 (531)
Q Consensus 368 a~~~~~~~~~~~~~~~------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 435 (531)
|.+.|.+.....-.-. .+++++|+..|-++...- ..+..+...+...|-...+...|.+++-+....
T Consensus 509 a~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~il-~nn~evl~qianiye~led~aqaie~~~q~~sl 587 (840)
T KOG2003|consen 509 AAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAIL-LNNAEVLVQIANIYELLEDPAQAIELLMQANSL 587 (840)
T ss_pred HHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc
Confidence 6666665543211000 455666666655544221 125666777777788888888888887776654
Q ss_pred CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-----------------HhhHHHHHHHHHHHHHcCCCCCHHHHHH
Q 038190 436 GPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK-----------------IRECLKAIELLHKMAKRYVKPDEITVSI 498 (531)
Q Consensus 436 g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----------------i~~~~~a~~~~~~~~~~~~~~~~~~~~~ 498 (531)
++.|+.....|...|-+.|+-..|.+.+-+--+- ..=+++++.+|++.. -++|+..-|..
T Consensus 588 -ip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaa--liqp~~~kwql 664 (840)
T KOG2003|consen 588 -IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAA--LIQPNQSKWQL 664 (840)
T ss_pred -CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHH--hcCccHHHHHH
Confidence 4556777777888888888877776554332111 134567777777765 46899999988
Q ss_pred HHHHH-hccCChhHHHhhHHHhhhc
Q 038190 499 LEELL-NKDENCHECMNLLPSFLSR 522 (531)
Q Consensus 499 l~~~~-~~~g~~~~a~~~~~~~~~~ 522 (531)
++..| -|.|++++|.++++.+..+
T Consensus 665 miasc~rrsgnyqka~d~yk~~hrk 689 (840)
T KOG2003|consen 665 MIASCFRRSGNYQKAFDLYKDIHRK 689 (840)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHHh
Confidence 76555 5789999999999887654
No 50
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.52 E-value=3.9e-11 Score=115.50 Aligned_cols=228 Identities=13% Similarity=0.093 Sum_probs=157.1
Q ss_pred HHHHHHHHcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCcchHHHHHHHHHHCC
Q 038190 73 CFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKV 152 (531)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 152 (531)
.++..+...|+.|+.++|..+|.-|+..|+.+.|- +|..|.-...+.+...++.++....+.++.+.+.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk---------- 79 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK---------- 79 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC----------
Confidence 46677888899999999999999999999999998 9999987777777778888888888888877765
Q ss_pred CCCChhhHHHHHHHHHhcCChHH---HHHHHHHHHH----cC-------------CCCCCCCcHHh----------HHHH
Q 038190 153 FSPDVVTLGCLIRGLCMQGKFTE---ASGLFTKFVA----FD-------------CRPNVIPNVIC----------YASI 202 (531)
Q Consensus 153 ~~~~~~~~~~li~~~~~~g~~~~---a~~~~~~~~~----~~-------------~~~~~~~~~~~----------~~~l 202 (531)
.|...+|..|..+|...||+.. ..+.++.+.. .| +.|..-||... |..+
T Consensus 80 -ep~aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaql 158 (1088)
T KOG4318|consen 80 -EPLADTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQL 158 (1088)
T ss_pred -CCchhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHH
Confidence 5677788888888888887544 2222222221 11 11211133222 1111
Q ss_pred HHHHHh------cC-----------ChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChhhhhcchHHHHHHHHHHH
Q 038190 203 IDGLCK------DG-----------FVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFV 265 (531)
Q Consensus 203 ~~~~~~------~~-----------~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~a~~~~~~~~ 265 (531)
+..... .+ ++....++.+......-.|++.+|..++++-..+|+.+.|.. ++..|.
T Consensus 159 lkll~~~Pvsa~~~p~~vfLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~-------ll~emk 231 (1088)
T KOG4318|consen 159 LKLLAKVPVSAWNAPFQVFLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKN-------LLYEMK 231 (1088)
T ss_pred HHHHhhCCcccccchHHHHHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHH-------HHHHHH
Confidence 111110 01 111122222222221115889999999999999999998888 999999
Q ss_pred hCCCCCCccccCCHhhHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 038190 266 NGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMG 328 (531)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g 328 (531)
+.| .+.+.+-|-.++-+ .++...+..+++-|.+.|+.|+..|+...+-.+..+|
T Consensus 232 e~g------fpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~ 285 (1088)
T KOG4318|consen 232 EKG------FPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNG 285 (1088)
T ss_pred HcC------CCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcch
Confidence 998 77777777777655 7788888889999999999999888876665555533
No 51
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.51 E-value=2.1e-10 Score=101.13 Aligned_cols=270 Identities=9% Similarity=0.044 Sum_probs=201.5
Q ss_pred cCChHHHHHHHHHHHHcCCCCCCCCcHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChhh
Q 038190 170 QGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWED 249 (531)
Q Consensus 170 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~ 249 (531)
.|++..|+++..+-.+.+..| ...|..-..+.-..|+.+.+-+++.+..+..-.++...+-+........|++..
T Consensus 97 eG~~~qAEkl~~rnae~~e~p-----~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~a 171 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQP-----VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPA 171 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcch-----HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchh
Confidence 589999999998877765443 566777777888889999999999999886445566677777788888888888
Q ss_pred hhcchHHHHHHHHHHHhCCCCCCccccCCHhhHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCH-------HHHHHHHH
Q 038190 250 AKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDV-------VVYSSLID 322 (531)
Q Consensus 250 a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~ll~ 322 (531)
|.. -..++...+ +...........+|.+.|++.....++..+.+.|.-.+. .+|..+++
T Consensus 172 A~~-------~v~~ll~~~-------pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~ 237 (400)
T COG3071 172 ARE-------NVDQLLEMT-------PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQ 237 (400)
T ss_pred HHH-------HHHHHHHhC-------cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHH
Confidence 888 455554443 456777888999999999999999999999999866554 35677777
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHhCCC
Q 038190 323 GYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKF 402 (531)
Q Consensus 323 ~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 402 (531)
-....+..+.-...|+...+. .+-++..-.+++.-+.+.|+.++|.++..+..+.+..|
T Consensus 238 q~~~~~~~~gL~~~W~~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~-------------------- 296 (400)
T COG3071 238 QARDDNGSEGLKTWWKNQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDP-------------------- 296 (400)
T ss_pred HHhccccchHHHHHHHhccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccCh--------------------
Confidence 666666666666677766543 23366677788889999999999999998888766543
Q ss_pred CCCHHHHHHHHHHHHcCCChHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH------------
Q 038190 403 ELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK------------ 470 (531)
Q Consensus 403 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------------ 470 (531)
. -...-.+.+-++...-.+..+.-.+. .+-++..+..|...|.+++.|.+|.+.|+...+.
T Consensus 297 ----~--L~~~~~~l~~~d~~~l~k~~e~~l~~-h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~ 369 (400)
T COG3071 297 ----R--LCRLIPRLRPGDPEPLIKAAEKWLKQ-HPEDPLLLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELAD 369 (400)
T ss_pred ----h--HHHHHhhcCCCCchHHHHHHHHHHHh-CCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHH
Confidence 2 22223345667777766666665543 2335578889999999999999999999977765
Q ss_pred ----HhhHHHHHHHHHHHHH
Q 038190 471 ----IRECLKAIELLHKMAK 486 (531)
Q Consensus 471 ----i~~~~~a~~~~~~~~~ 486 (531)
.|+.++|.+..++.+.
T Consensus 370 ~~~~~g~~~~A~~~r~e~L~ 389 (400)
T COG3071 370 ALDQLGEPEEAEQVRREALL 389 (400)
T ss_pred HHHHcCChHHHHHHHHHHHH
Confidence 2666666666666553
No 52
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.50 E-value=8.7e-12 Score=116.59 Aligned_cols=279 Identities=13% Similarity=0.058 Sum_probs=184.4
Q ss_pred CcchHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCCCcHHhHHHHHHHHHhcCCh-hHH
Q 038190 137 GVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFV-NKV 215 (531)
Q Consensus 137 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~a 215 (531)
+..+|...|......- .-+..+...+.++|...+++++|.++|+.+... .|-...+..+|.+.+-.+-+.=.. -.|
T Consensus 334 ~~~~A~~~~~klp~h~-~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~--~p~rv~~meiyST~LWHLq~~v~Ls~La 410 (638)
T KOG1126|consen 334 NCREALNLFEKLPSHH-YNTGWVLSQLGRAYFELIEYDQAERIFSLVRRI--EPYRVKGMEIYSTTLWHLQDEVALSYLA 410 (638)
T ss_pred HHHHHHHHHHhhHHhc-CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ccccccchhHHHHHHHHHHhhHHHHHHH
Confidence 4567777777744442 223356666778888888888888888887765 333334667777766544322111 112
Q ss_pred HHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChhhhhcchHHHHHHHHHHHhCCCCCCccccCCHhhHHHHHHHHhcCCCH
Q 038190 216 RVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLV 295 (531)
Q Consensus 216 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 295 (531)
..+.+.. +-.+.+|.++..+|.-+++.+.|++ .|++..+.+ +....+|+.+..-+.....+
T Consensus 411 q~Li~~~-----~~sPesWca~GNcfSLQkdh~~Aik-------~f~RAiQld-------p~faYayTLlGhE~~~~ee~ 471 (638)
T KOG1126|consen 411 QDLIDTD-----PNSPESWCALGNCFSLQKDHDTAIK-------CFKRAIQLD-------PRFAYAYTLLGHESIATEEF 471 (638)
T ss_pred HHHHhhC-----CCCcHHHHHhcchhhhhhHHHHHHH-------HHHHhhccC-------CccchhhhhcCChhhhhHHH
Confidence 2222222 2256778888888888877777777 555554433 22567787777777778888
Q ss_pred HHHHHHHHHHHhCCCCCCHHHH---HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 038190 296 DKAKELFLDMKSRGIIPDVVVY---SSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLY 372 (531)
Q Consensus 296 ~~a~~~~~~~~~~~~~~~~~~~---~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~ 372 (531)
|.|...|+..+.. |+..| -.+...|.+.++++.|+-.|++..+.++. +.+....+...+.+.|+.++|+.++
T Consensus 472 d~a~~~fr~Al~~----~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~-nsvi~~~~g~~~~~~k~~d~AL~~~ 546 (638)
T KOG1126|consen 472 DKAMKSFRKALGV----DPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPS-NSVILCHIGRIQHQLKRKDKALQLY 546 (638)
T ss_pred HhHHHHHHhhhcC----CchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCcc-chhHHhhhhHHHHHhhhhhHHHHHH
Confidence 8888888776654 44444 44555678888888888888888876654 5666666777777888888888888
Q ss_pred HHHHhCCCCCCcccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHhhhCCCCCc-HHHHHHHHHHH
Q 038190 373 GEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPN-VVTYTVMICGL 451 (531)
Q Consensus 373 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~ 451 (531)
++..... |. |+..--..+..+...+++++|+..++++++. .|+ ...|..+...|
T Consensus 547 ~~A~~ld--~k---------------------n~l~~~~~~~il~~~~~~~eal~~LEeLk~~--vP~es~v~~llgki~ 601 (638)
T KOG1126|consen 547 EKAIHLD--PK---------------------NPLCKYHRASILFSLGRYVEALQELEELKEL--VPQESSVFALLGKIY 601 (638)
T ss_pred HHHHhcC--CC---------------------CchhHHHHHHHHHhhcchHHHHHHHHHHHHh--CcchHHHHHHHHHHH
Confidence 8776532 21 5555555566777888899999999988884 454 55677778888
Q ss_pred HHcCCHHHHHHHHHHH
Q 038190 452 CIEGGIEKAYDLLPDM 467 (531)
Q Consensus 452 ~~~g~~~~A~~~~~~~ 467 (531)
.+.|+.+.|+.-|-.+
T Consensus 602 k~~~~~~~Al~~f~~A 617 (638)
T KOG1126|consen 602 KRLGNTDLALLHFSWA 617 (638)
T ss_pred HHHccchHHHHhhHHH
Confidence 8888888876655443
No 53
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.48 E-value=3.9e-11 Score=113.30 Aligned_cols=264 Identities=15% Similarity=0.100 Sum_probs=180.4
Q ss_pred HHhHHHHHHHHHhcCChhHHHHHHHHHhhC-----CC-CCCHhh-HHHHHHHHHhcCChhhhhcchHHHHHHHHHHHhCC
Q 038190 196 VICYASIIDGLCKDGFVNKVRVLFLDMKGR-----GI-YPDAFV-YNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGN 268 (531)
Q Consensus 196 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~-----g~-~p~~~~-~~~li~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~ 268 (531)
..+...+...|...|+++.|+.+++...+. |. .|...+ .+.+...|...+++.+|...|++|+.+++......
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~ 278 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGED 278 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC
Confidence 345666889999999999999999876543 21 223222 33466788899999999999999999998887665
Q ss_pred CCCCccccCCHhhHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC
Q 038190 269 GELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPD 348 (531)
Q Consensus 269 ~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~ 348 (531)
.+.-..+++.|..+|.+.|++++|...++...+- ++..... ..|.
T Consensus 279 ------h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I----------------------------~~~~~~~-~~~~ 323 (508)
T KOG1840|consen 279 ------HPAVAATLNNLAVLYYKQGKFAEAEEYCERALEI----------------------------YEKLLGA-SHPE 323 (508)
T ss_pred ------CHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHH----------------------------HHHhhcc-ChHH
Confidence 4445667888888999999999998888765532 1110000 0011
Q ss_pred H-HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHH
Q 038190 349 T-SSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWE 427 (531)
Q Consensus 349 ~-~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 427 (531)
+ ..++.+...|...+++++|..+++...+ ++.........--..+++.|...|...|++++|.+
T Consensus 324 v~~~l~~~~~~~~~~~~~Eea~~l~q~al~---------------i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~ 388 (508)
T KOG1840|consen 324 VAAQLSELAAILQSMNEYEEAKKLLQKALK---------------IYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEE 388 (508)
T ss_pred HHHHHHHHHHHHHHhcchhHHHHHHHHHHH---------------HHHhhccccchHHHHHHHHHHHHHHHhcchhHHHH
Confidence 1 1234445556666666776666664432 12111111111135689999999999999999999
Q ss_pred HHHHhhhC----CC--CC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 038190 428 LFKKLPRY----GP--EP-NVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECLKAIELLHKMAKRYVKPDEITVSILE 500 (531)
Q Consensus 428 ~~~~~~~~----g~--~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~i~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 500 (531)
+++.++.. +. .+ ....++.|...|.+.+++.+|.++|.+ +..+. +....+.+-...+|..|+
T Consensus 389 ~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~----------~~~i~-~~~g~~~~~~~~~~~nL~ 457 (508)
T KOG1840|consen 389 LYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEE----------AKDIM-KLCGPDHPDVTYTYLNLA 457 (508)
T ss_pred HHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHH----------HHHHH-HHhCCCCCchHHHHHHHH
Confidence 99988752 11 22 245678899999999999999999965 34444 333323222347899999
Q ss_pred HHHhccCChhHHHhhHHHhh
Q 038190 501 ELLNKDENCHECMNLLPSFL 520 (531)
Q Consensus 501 ~~~~~~g~~~~a~~~~~~~~ 520 (531)
.+|.+.|++++|.++.+...
T Consensus 458 ~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 458 ALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHHHHcccHHHHHHHHHHHH
Confidence 99999999999999988765
No 54
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.46 E-value=9.3e-09 Score=96.08 Aligned_cols=374 Identities=12% Similarity=0.077 Sum_probs=203.9
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHhC-CCCCCHhhHHHHHHHHHccCCcchHHHHHHHHHHCCCCCChhhHHHHHHHH
Q 038190 89 SFNSLLGALAGKKYYVNFICLSERLNTI-GLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGL 167 (531)
Q Consensus 89 ~~~~li~~~~~~~~~~~a~~~~~~m~~~-g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 167 (531)
.|-.-+..+..+|++......|++.+.. .+.....+|...+......+-++.+..+|++.++. ++..-+..|..+
T Consensus 104 Iwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~----~P~~~eeyie~L 179 (835)
T KOG2047|consen 104 IWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV----APEAREEYIEYL 179 (835)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc----CHHHHHHHHHHH
Confidence 4555555555666666666666665443 12223345666666666666666666666666654 222345556666
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCCC--------------------------------------CCcH--HhHHHHHHHHH
Q 038190 168 CMQGKFTEASGLFTKFVAFDCRPNV--------------------------------------IPNV--ICYASIIDGLC 207 (531)
Q Consensus 168 ~~~g~~~~a~~~~~~~~~~~~~~~~--------------------------------------~~~~--~~~~~l~~~~~ 207 (531)
+..+++++|.+.+..+.......+. .+|. ..|++|.+.|.
T Consensus 180 ~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdYYI 259 (835)
T KOG2047|consen 180 AKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADYYI 259 (835)
T ss_pred HhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHHHH
Confidence 6666666666655555432111000 0343 37899999999
Q ss_pred hcCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhc----------------CChhhhhcchHHHHHHHHHHHhCCCCC
Q 038190 208 KDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCA----------------VNWEDAKGNTSAALELHEEFVNGNGEL 271 (531)
Q Consensus 208 ~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~----------------~~~~~a~~~~~~a~~~~~~~~~~~~~~ 271 (531)
+.|.++.|.++|++....- .+..-|..+.++|+.. ++-+.- ..++..+.-|+.+....+..
T Consensus 260 r~g~~ekarDvyeeai~~v--~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~-~dl~~~~a~~e~lm~rr~~~ 336 (835)
T KOG2047|consen 260 RSGLFEKARDVYEEAIQTV--MTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDD-VDLELHMARFESLMNRRPLL 336 (835)
T ss_pred HhhhhHHHHHHHHHHHHhh--eehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhh-hhHHHHHHHHHHHHhccchH
Confidence 9999999999998876541 2333344444444321 111000 01122222233322222100
Q ss_pred Cc-------------------------------------cccC------CHhhHHHHHHHHhcCCCHHHHHHHHHHHHhC
Q 038190 272 GV-------------------------------------ICHP------DVLSYCSIINSLCKDVLVDKAKELFLDMKSR 308 (531)
Q Consensus 272 ~~-------------------------------------~~~~------~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 308 (531)
.. .+.| -...|..+...|-..|+.+.|..+|++..+.
T Consensus 337 lNsVlLRQn~~nV~eW~kRV~l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V 416 (835)
T KOG2047|consen 337 LNSVLLRQNPHNVEEWHKRVKLYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKV 416 (835)
T ss_pred HHHHHHhcCCccHHHHHhhhhhhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcC
Confidence 00 0011 1234667778888888888888888887765
Q ss_pred CCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhc----------CCCC-------CHHHHHHHHHHHHhcCCHHHH
Q 038190 309 GIIPD---VVVYSSLIDGYCLMGRIDDARKLFVSIESE----------GCIP-------DTSSYNTLINSYSKIEKVEEA 368 (531)
Q Consensus 309 ~~~~~---~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~----------g~~p-------~~~~~~~li~~~~~~~~~~~a 368 (531)
..+-- ..+|.....+=.+..+++.|.++.+..... |-.| +...|+..++.-...|-++..
T Consensus 417 ~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfest 496 (835)
T KOG2047|consen 417 PYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFEST 496 (835)
T ss_pred CccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHH
Confidence 43321 234444445555666777888777765432 0011 234556666666667788888
Q ss_pred HHHHHHHHhCCCCCC------------cccHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHc---CCChHHHHHHHHHh
Q 038190 369 LSLYGEMISMGVRPD------------NSCILEAAELFRTLHNTKFELDL-TVFNCLVDGLCK---SWRLRSAWELFKKL 432 (531)
Q Consensus 369 ~~~~~~~~~~~~~~~------------~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~---~g~~~~A~~~~~~~ 432 (531)
..+|+++.+..+... ..-++++.+++++-...-.-|++ ..|+..+.-+.+ .-..+.|..+|++.
T Consensus 497 k~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqa 576 (835)
T KOG2047|consen 497 KAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQA 576 (835)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 888888877655433 23344455554443333223443 356665555543 33678888888888
Q ss_pred hhCCCCCcHHHHHHHH--HHHHHcCCHHHHHHHHHHHHHH
Q 038190 433 PRYGPEPNVVTYTVMI--CGLCIEGGIEKAYDLLPDMEEK 470 (531)
Q Consensus 433 ~~~g~~p~~~~~~~l~--~~~~~~g~~~~A~~~~~~~~~~ 470 (531)
++ |++|...-+--|+ ..--..|-...|++++++....
T Consensus 577 L~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~ 615 (835)
T KOG2047|consen 577 LD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSA 615 (835)
T ss_pred Hh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhc
Confidence 87 5665533222222 2222457777777777776554
No 55
>PRK12370 invasion protein regulator; Provisional
Probab=99.43 E-value=8.9e-11 Score=116.49 Aligned_cols=248 Identities=11% Similarity=0.021 Sum_probs=135.7
Q ss_pred HHHHHHHHHHHhCCCCCCHhhHHHHHHHHH---------ccCCcchHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChH
Q 038190 104 VNFICLSERLNTIGLLPDFVSLNILMNCFC---------KMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFT 174 (531)
Q Consensus 104 ~~a~~~~~~m~~~g~~~~~~~~~~li~~~~---------~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 174 (531)
++|+.+|++..+.. +-+...|..+..++. ..+++++|...++++++..+. +..++..+..++...|+++
T Consensus 278 ~~A~~~~~~Al~ld-P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~-~~~a~~~lg~~~~~~g~~~ 355 (553)
T PRK12370 278 QQALKLLTQCVNMS-PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHN-NPQALGLLGLINTIHSEYI 355 (553)
T ss_pred HHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHccCHH
Confidence 56666666666553 223344444444332 123356777777777766533 5566666666677777777
Q ss_pred HHHHHHHHHHHcCCCCCCCCcHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChhhhhcch
Q 038190 175 EASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNT 254 (531)
Q Consensus 175 ~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~ 254 (531)
+|...|++.... .|+ +...+..+...+...|++++|...+++..+.... +...+..++..+...|++++|..
T Consensus 356 ~A~~~~~~Al~l--~P~---~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~~~~~~~~~~~~~~g~~eeA~~-- 427 (553)
T PRK12370 356 VGSLLFKQANLL--SPI---SADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RAAAGITKLWITYYHTGIDDAIR-- 427 (553)
T ss_pred HHHHHHHHHHHh--CCC---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHhccCHHHHHH--
Confidence 777777777665 332 4556666777777777777777777777664322 11222233334555667776766
Q ss_pred HHHHHHHHHHHhCCCCCCccccCCHhhHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHH
Q 038190 255 SAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPD-VVVYSSLIDGYCLMGRIDDA 333 (531)
Q Consensus 255 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~g~~~~a 333 (531)
.+++..... .+-+...+..+..++...|++++|...++++... .|+ ....+.+...|+..| +.|
T Consensus 428 -----~~~~~l~~~------~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g--~~a 492 (553)
T PRK12370 428 -----LGDELRSQH------LQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ--EITGLIAVNLLYAEYCQNS--ERA 492 (553)
T ss_pred -----HHHHHHHhc------cccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc--cchhHHHHHHHHHHHhccH--HHH
Confidence 555544332 1113334555666667777777777777766544 233 333344444556555 366
Q ss_pred HHHHHHHHhcCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 038190 334 RKLFVSIESEGC-IPDTSSYNTLINSYSKIEKVEEALSLYGEMISMG 379 (531)
Q Consensus 334 ~~~~~~~~~~g~-~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 379 (531)
...++.+.+..- .+....+ +-..|.-.|+.+.+..+ +++.+.+
T Consensus 493 ~~~l~~ll~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 493 LPTIREFLESEQRIDNNPGL--LPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred HHHHHHHHHHhhHhhcCchH--HHHHHHHHhhhHHHHHH-HHhhccc
Confidence 666665544211 1121222 33334445555555544 6665544
No 56
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.43 E-value=8.3e-11 Score=113.29 Aligned_cols=343 Identities=15% Similarity=0.121 Sum_probs=184.1
Q ss_pred HHHHHHHhCCCCCCHhhHHHHHHHHHccCCcchHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 038190 108 CLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFD 187 (531)
Q Consensus 108 ~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 187 (531)
.++..+...|+.|+..||..+|.-||..|+.+.|- +|.-|.....+.+..+++.++......++.+.+.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk---------- 79 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK---------- 79 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC----------
Confidence 46777888999999999999999999999999998 9999988877888899999999999999877665
Q ss_pred CCCCCCCcHHhHHHHHHHHHhcCChhHHHHHHHHHh-------hCCCCCCHhhHHHHHHHHHhcCChhhhh---------
Q 038190 188 CRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMK-------GRGIYPDAFVYNSLIRVYCCAVNWEDAK--------- 251 (531)
Q Consensus 188 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~-------~~g~~p~~~~~~~li~~~~~~~~~~~a~--------- 251 (531)
.|...+|..|..+|...||......+=+.|. ..|+.....-+-..++++ -+-..++.
T Consensus 80 -----ep~aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~--p~~lpda~n~illlv~e 152 (1088)
T KOG4318|consen 80 -----EPLADTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCC--PHSLPDAENAILLLVLE 152 (1088)
T ss_pred -----CCchhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccC--cccchhHHHHHHHHHHH
Confidence 1578899999999999999765222211121 122221111111111111 11111111
Q ss_pred cchHHHHHHHHHHHhCCCCCCccccCCHhhHHHHHHHHhcC-CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 038190 252 GNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKD-VLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRI 330 (531)
Q Consensus 252 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~ 330 (531)
+.++.+++++..+..... ..| +-.+++-+... ..+++-..+.+...+ .|+..+|.+++..-...|+.
T Consensus 153 glwaqllkll~~~Pvsa~-----~~p----~~vfLrqnv~~ntpvekLl~~cksl~e---~~~s~~l~a~l~~alaag~~ 220 (1088)
T KOG4318|consen 153 GLWAQLLKLLAKVPVSAW-----NAP----FQVFLRQNVVDNTPVEKLLNMCKSLVE---APTSETLHAVLKRALAAGDV 220 (1088)
T ss_pred HHHHHHHHHHhhCCcccc-----cch----HHHHHHHhccCCchHHHHHHHHHHhhc---CCChHHHHHHHHHHHhcCch
Confidence 111111112222111110 001 11112222221 122222222222221 46666666666666666666
Q ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHhCCCCCCHHHHH
Q 038190 331 DDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFN 410 (531)
Q Consensus 331 ~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 410 (531)
+.|..++.+|.+.|+..+..-|..|+-+ .++...+..++.-|.+.|+.| +..|+.
T Consensus 221 d~Ak~ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p----------------------~seT~a 275 (1088)
T KOG4318|consen 221 DGAKNLLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQP----------------------GSETQA 275 (1088)
T ss_pred hhHHHHHHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCC----------------------CcchhH
Confidence 6666666666666666666655555554 555555555565665555544 666776
Q ss_pred HHHHHHHcCCChHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC
Q 038190 411 CLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECLKAIELLHKMAKRYVK 490 (531)
Q Consensus 411 ~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~i~~~~~a~~~~~~~~~~~~~ 490 (531)
..+-.+...|.... .+.|. +....+.+-+..-.-.| ..|.+.+++-.. .-.+..+.+..-.|+.
T Consensus 276 dyvip~l~N~~t~~--------~~e~s-q~~hg~tAavrsaa~rg--~~a~k~l~~nl~-----~~v~~s~k~~fLlg~d 339 (1088)
T KOG4318|consen 276 DYVIPQLSNGQTKY--------GEEGS-QLAHGFTAAVRSAACRG--LLANKRLRQNLR-----KSVIGSTKKLFLLGTD 339 (1088)
T ss_pred HHHHhhhcchhhhh--------ccccc-chhhhhhHHHHHHHhcc--cHhHHHHHHHHH-----HHHHHHhhHHHHhccc
Confidence 66666666443111 11221 22222222222222222 333333332211 1222333333334555
Q ss_pred CCHHHHHHHHHHHhccCChhHHHhhHHHhhhc
Q 038190 491 PDEITVSILEELLNKDENCHECMNLLPSFLSR 522 (531)
Q Consensus 491 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 522 (531)
....+|...++.. .+|+.++..++...+...
T Consensus 340 ~~~aiws~c~~l~-hQgk~e~veqlvg~l~np 370 (1088)
T KOG4318|consen 340 ILEAIWSMCEKLR-HQGKGEEVEQLVGQLLNP 370 (1088)
T ss_pred cchHHHHHHHHHH-HcCCCchHHHHHhhhcCC
Confidence 5555555444433 378888888888777654
No 57
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.38 E-value=2.6e-08 Score=92.38 Aligned_cols=420 Identities=15% Similarity=0.140 Sum_probs=242.1
Q ss_pred hhhhcccCCCCCcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHH--HHH
Q 038190 53 LLKYLSENSKSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNI--LMN 130 (531)
Q Consensus 53 l~~~l~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~--li~ 130 (531)
++.-+.... ..|++++|....+.++..++. +..++.+-+-++.+.++|++|+.+.+.-.. ..+++. +=.
T Consensus 15 l~t~ln~~~--~~~e~e~a~k~~~Kil~~~pd-d~~a~~cKvValIq~~ky~~ALk~ikk~~~------~~~~~~~~fEK 85 (652)
T KOG2376|consen 15 LLTDLNRHG--KNGEYEEAVKTANKILSIVPD-DEDAIRCKVVALIQLDKYEDALKLIKKNGA------LLVINSFFFEK 85 (652)
T ss_pred HHHHHHHhc--cchHHHHHHHHHHHHHhcCCC-cHhhHhhhHhhhhhhhHHHHHHHHHHhcch------hhhcchhhHHH
Confidence 444444443 356999999999999987765 566777778889999999999966554221 111122 234
Q ss_pred HHH--ccCCcchHHHHHHHHHHCCCCC-ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCCCcHHhHHHHHHHHH
Q 038190 131 CFC--KMIGVSDAFVALGRILRKVFSP-DVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLC 207 (531)
Q Consensus 131 ~~~--~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 207 (531)
+|| +.+..++|+..++ |..+ +..+...-...+.+.|++++|+.+|+.+...+.+- .+...-..++.+-.
T Consensus 86 AYc~Yrlnk~Dealk~~~-----~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd---~d~~~r~nl~a~~a 157 (652)
T KOG2376|consen 86 AYCEYRLNKLDEALKTLK-----GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDD---QDEERRANLLAVAA 157 (652)
T ss_pred HHHHHHcccHHHHHHHHh-----cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCch---HHHHHHHHHHHHHH
Confidence 444 7889999999887 3333 34466667788899999999999999998754321 12222222222111
Q ss_pred hcCChhHHHHHHHHHhhCCCCCCHhhHHHHH---HHHHhcCChhhhhcchHHHHHHHHHHHhCCCCCCccccCCHh-hHH
Q 038190 208 KDGFVNKVRVLFLDMKGRGIYPDAFVYNSLI---RVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVL-SYC 283 (531)
Q Consensus 208 ~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li---~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~-~~~ 283 (531)
-..+. + +......| ..+|..+. ..+...|++.+|++.++.|+++..+-...+....+.+.-... .-.
T Consensus 158 ----~l~~~-~---~q~v~~v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~Irv 228 (652)
T KOG2376|consen 158 ----ALQVQ-L---LQSVPEVP-EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRV 228 (652)
T ss_pred ----hhhHH-H---HHhccCCC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHH
Confidence 11111 2 22222233 33444443 345678999999998888877766655554221110111111 122
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHH----HHHHHHHHH----------------------------------
Q 038190 284 SIINSLCKDVLVDKAKELFLDMKSRGIIPDVVV----YSSLIDGYC---------------------------------- 325 (531)
Q Consensus 284 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~----~~~ll~~~~---------------------------------- 325 (531)
-+.-++-..|+..+|..+|....+.... |... -|.|+.+-.
T Consensus 229 QlayVlQ~~Gqt~ea~~iy~~~i~~~~~-D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~ 307 (652)
T KOG2376|consen 229 QLAYVLQLQGQTAEASSIYVDIIKRNPA-DEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQ 307 (652)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHHhcCC-CchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 3445667899999999999998876432 2211 111111000
Q ss_pred -----------hcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH--hcCCHHHHHHHHHHHHhCCCCCC---------
Q 038190 326 -----------LMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYS--KIEKVEEALSLYGEMISMGVRPD--------- 383 (531)
Q Consensus 326 -----------~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~--~~~~~~~a~~~~~~~~~~~~~~~--------- 383 (531)
-.+..+.+.++...+. +..| ...+.+++..+. +...+..+.+++...-+......
T Consensus 308 ~i~~N~~lL~l~tnk~~q~r~~~a~lp--~~~p-~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQ 384 (652)
T KOG2376|consen 308 AIYRNNALLALFTNKMDQVRELSASLP--GMSP-ESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQ 384 (652)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHhCC--ccCc-hHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHH
Confidence 0011111111111111 1122 233344444332 22246666666666544322111
Q ss_pred ----cccHHHHHHHHH--------HHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHhhhC--CCCCcHHHHHHHH-
Q 038190 384 ----NSCILEAAELFR--------TLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRY--GPEPNVVTYTVMI- 448 (531)
Q Consensus 384 ----~~~~~~a~~~~~--------~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--g~~p~~~~~~~l~- 448 (531)
.|+.+.|++++. .+.+.+.. +.+...++..+.+.++-+.|..++...... .-.+......+++
T Consensus 385 l~is~gn~~~A~~il~~~~~~~~ss~~~~~~~--P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~ 462 (652)
T KOG2376|consen 385 LKISQGNPEVALEILSLFLESWKSSILEAKHL--PGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMR 462 (652)
T ss_pred HHHhcCCHHHHHHHHHHHhhhhhhhhhhhccC--hhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHH
Confidence 678888888887 55555443 456677788888888888888887777641 1122223333333
Q ss_pred ---HHHHHcCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChhHHHhhHHHhhhcc
Q 038190 449 ---CGLCIEGGIEKAYDLLPDMEEKIRECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLLPSFLSRN 523 (531)
Q Consensus 449 ---~~~~~~g~~~~A~~~~~~~~~~i~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 523 (531)
..-.++|+-++|..+++++.+ . .++|..+...++.+|++. +.+.|..+-++++...
T Consensus 463 ~aa~f~lr~G~~~ea~s~leel~k-----------------~-n~~d~~~l~~lV~a~~~~-d~eka~~l~k~L~p~~ 521 (652)
T KOG2376|consen 463 EAAEFKLRHGNEEEASSLLEELVK-----------------F-NPNDTDLLVQLVTAYARL-DPEKAESLSKKLPPLK 521 (652)
T ss_pred HHhHHHHhcCchHHHHHHHHHHHH-----------------h-CCchHHHHHHHHHHHHhc-CHHHHHHHhhcCCCcc
Confidence 333466777777666655544 2 367889999999999997 7899998888776543
No 58
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.37 E-value=7.6e-10 Score=104.72 Aligned_cols=255 Identities=20% Similarity=0.159 Sum_probs=186.7
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHHHHcC--CCCCCCCcHHh-HHHHHHHHHhcCChhHHHHHHHHHhhC-----CC-
Q 038190 157 VVTLGCLIRGLCMQGKFTEASGLFTKFVAFD--CRPNVIPNVIC-YASIIDGLCKDGFVNKVRVLFLDMKGR-----GI- 227 (531)
Q Consensus 157 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~~~~~~-~~~l~~~~~~~~~~~~a~~~~~~m~~~-----g~- 227 (531)
..+...+...|...|+++.|+.+++...+.- ......|.+.+ .+.+...|...+++++|..+|+++..- |-
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~ 278 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGED 278 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC
Confidence 3466678999999999999999999887640 00011134443 344778899999999999999988642 21
Q ss_pred CC-CHhhHHHHHHHHHhcCChhhhhcchHHHHHHHHHHHhCCCCCCccccCCHh-hHHHHHHHHhcCCCHHHHHHHHHHH
Q 038190 228 YP-DAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVL-SYCSIINSLCKDVLVDKAKELFLDM 305 (531)
Q Consensus 228 ~p-~~~~~~~li~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~-~~~~ll~~~~~~~~~~~a~~~~~~~ 305 (531)
.| -..+++.|..+|.+.|++++|...++.|+++++...... .|.+. .++.+...++..+++++|..+++..
T Consensus 279 h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~-------~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~a 351 (508)
T KOG1840|consen 279 HPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGAS-------HPEVAAQLSELAAILQSMNEYEEAKKLLQKA 351 (508)
T ss_pred CHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccC-------hHHHHHHHHHHHHHHHHhcchhHHHHHHHHH
Confidence 12 245677788889999999999999999999999943322 33433 4667788889999999999998876
Q ss_pred HhC---CCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc----CCC--C-CHHHHHHHHHHHHhcCCHHHHHHH
Q 038190 306 KSR---GIIP----DVVVYSSLIDGYCLMGRIDDARKLFVSIESE----GCI--P-DTSSYNTLINSYSKIEKVEEALSL 371 (531)
Q Consensus 306 ~~~---~~~~----~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~----g~~--p-~~~~~~~li~~~~~~~~~~~a~~~ 371 (531)
.+. -..+ -..+++.|...|...|++++|.++|+.++.. +.. + ....++.|...|.+.++..+|.++
T Consensus 352 l~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l 431 (508)
T KOG1840|consen 352 LKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQL 431 (508)
T ss_pred HHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHH
Confidence 543 1112 2467899999999999999999999997653 111 1 245677888899999999999999
Q ss_pred HHHHHhCCCCCCcccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHhhh
Q 038190 372 YGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPR 434 (531)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 434 (531)
|.+... |. .....+.+-...+|..|...|...|+++.|.++.+....
T Consensus 432 ~~~~~~---------------i~-~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 432 FEEAKD---------------IM-KLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred HHHHHH---------------HH-HHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 887543 11 111122222456789999999999999999999887763
No 59
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.37 E-value=7.7e-10 Score=97.83 Aligned_cols=203 Identities=10% Similarity=0.020 Sum_probs=164.1
Q ss_pred CCHhhHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 038190 277 PDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLI 356 (531)
Q Consensus 277 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li 356 (531)
.....+..+...+...|++++|.+.+++..+.. +.+...+..+...|...|++++|.+.+++..+.... +...+..+.
T Consensus 29 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~~ 106 (234)
T TIGR02521 29 KAAKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPN-NGDVLNNYG 106 (234)
T ss_pred cHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHH
Confidence 345677888999999999999999999988763 335778888889999999999999999999887543 567788888
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHhhhCC
Q 038190 357 NSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYG 436 (531)
Q Consensus 357 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g 436 (531)
..+...|++++|...+++..+....+ .....+..+..++...|++++|...+++..+..
T Consensus 107 ~~~~~~g~~~~A~~~~~~~~~~~~~~---------------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 165 (234)
T TIGR02521 107 TFLCQQGKYEQAMQQFEQAIEDPLYP---------------------QPARSLENAGLCALKAGDFDKAEKYLTRALQID 165 (234)
T ss_pred HHHHHcccHHHHHHHHHHHHhccccc---------------------cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 99999999999999999987642222 145677788999999999999999999998752
Q ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChhHHHhhH
Q 038190 437 PEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLL 516 (531)
Q Consensus 437 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~i~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 516 (531)
+.+...+..+...+...|++++|.+.+++... . .+.+...+..++..+...|+.++|..+.
T Consensus 166 -~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~-----------------~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 226 (234)
T TIGR02521 166 -PQRPESLLELAELYYLRGQYKDARAYLERYQQ-----------------T-YNQTAESLWLGIRIARALGDVAAAQRYG 226 (234)
T ss_pred -cCChHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----------------h-CCCCHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 23466788888999999999999887765433 1 2345667778889999999999999998
Q ss_pred HHhhh
Q 038190 517 PSFLS 521 (531)
Q Consensus 517 ~~~~~ 521 (531)
+.+..
T Consensus 227 ~~~~~ 231 (234)
T TIGR02521 227 AQLQK 231 (234)
T ss_pred HHHHh
Confidence 87654
No 60
>PRK12370 invasion protein regulator; Provisional
Probab=99.36 E-value=1.2e-09 Score=108.44 Aligned_cols=234 Identities=16% Similarity=0.043 Sum_probs=169.6
Q ss_pred CCCHhhHHHHHHHHHc-----cCCcchHHHHHHHHHHCCCCCChhhHHHHHHHHHh---------cCChHHHHHHHHHHH
Q 038190 119 LPDFVSLNILMNCFCK-----MIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCM---------QGKFTEASGLFTKFV 184 (531)
Q Consensus 119 ~~~~~~~~~li~~~~~-----~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~---------~g~~~~a~~~~~~~~ 184 (531)
..+...|...+++... .+++++|...|++.++..+. +...|..+..++.. .+++++|...+++..
T Consensus 253 ~~~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ldP~-~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al 331 (553)
T PRK12370 253 LNSIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMSPN-SIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKAT 331 (553)
T ss_pred CCChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHH
Confidence 4455556565555321 23567999999999987533 45566666655442 245889999999999
Q ss_pred HcCCCCCCCCcHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChhhhhcchHHHHHHHHHH
Q 038190 185 AFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEF 264 (531)
Q Consensus 185 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~a~~~~~~~ 264 (531)
+. .|+ +..++..+...+...|++++|...|++..+.+. .+...+..+...+...|++++|.. .++..
T Consensus 332 ~l--dP~---~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P-~~~~a~~~lg~~l~~~G~~~eAi~-------~~~~A 398 (553)
T PRK12370 332 EL--DHN---NPQALGLLGLINTIHSEYIVGSLLFKQANLLSP-ISADIKYYYGWNLFMAGQLEEALQ-------TINEC 398 (553)
T ss_pred hc--CCC---CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHH-------HHHHH
Confidence 87 553 788899999999999999999999999988642 246678888889999999999999 66666
Q ss_pred HhCCCCCCccccCC-HhhHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 038190 265 VNGNGELGVICHPD-VLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESE 343 (531)
Q Consensus 265 ~~~~~~~~~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 343 (531)
...+ |+ ...+..++..+...|++++|...+++..+...+-+...+..+..++...|++++|...+.++...
T Consensus 399 l~l~--------P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~ 470 (553)
T PRK12370 399 LKLD--------PTRAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ 470 (553)
T ss_pred HhcC--------CCChhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc
Confidence 6654 33 22333445556778999999999999876532224556777788888999999999999998765
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 038190 344 GCIPDTSSYNTLINSYSKIEKVEEALSLYGEMIS 377 (531)
Q Consensus 344 g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 377 (531)
... +....+.+...|...| +.|...++.+.+
T Consensus 471 ~~~-~~~~~~~l~~~~~~~g--~~a~~~l~~ll~ 501 (553)
T PRK12370 471 EIT-GLIAVNLLYAEYCQNS--ERALPTIREFLE 501 (553)
T ss_pred cch-hHHHHHHHHHHHhccH--HHHHHHHHHHHH
Confidence 221 3344555666777777 477777777655
No 61
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.35 E-value=4.4e-08 Score=91.91 Aligned_cols=418 Identities=13% Similarity=0.034 Sum_probs=260.2
Q ss_pred CCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCcchHHHHH
Q 038190 66 VELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVAL 145 (531)
Q Consensus 66 g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~ 145 (531)
+++...+.+.+.+++..+. -..+.....-.+...|+-++|.+..+.-.+.. .-+...|+.+.-.+....++++|++.|
T Consensus 21 kQYkkgLK~~~~iL~k~~e-HgeslAmkGL~L~~lg~~~ea~~~vr~glr~d-~~S~vCwHv~gl~~R~dK~Y~eaiKcy 98 (700)
T KOG1156|consen 21 KQYKKGLKLIKQILKKFPE-HGESLAMKGLTLNCLGKKEEAYELVRLGLRND-LKSHVCWHVLGLLQRSDKKYDEAIKCY 98 (700)
T ss_pred HHHHhHHHHHHHHHHhCCc-cchhHHhccchhhcccchHHHHHHHHHHhccC-cccchhHHHHHHHHhhhhhHHHHHHHH
Confidence 4677777777777775444 22344444445667789999999988887754 446778999888888889999999999
Q ss_pred HHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCCCcHHhHHHHHHHHHhcCChhHHHHHHHHHhhC
Q 038190 146 GRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGR 225 (531)
Q Consensus 146 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 225 (531)
..+++.+.. |...+.-+.-.-++.|+++........+.+. .|+ ....|..+..++--.|+...|..++++..+.
T Consensus 99 ~nAl~~~~d-N~qilrDlslLQ~QmRd~~~~~~tr~~LLql--~~~---~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t 172 (700)
T KOG1156|consen 99 RNALKIEKD-NLQILRDLSLLQIQMRDYEGYLETRNQLLQL--RPS---QRASWIGFAVAQHLLGEYKMALEILEEFEKT 172 (700)
T ss_pred HHHHhcCCC-cHHHHHHHHHHHHHHHhhhhHHHHHHHHHHh--hhh---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999988744 7788888888888899999888888887775 332 5668888999999999999999999998865
Q ss_pred C-CCCCHhhHHHHHHHHHhcCChhhhhcchHHHHHHHHHHHhCCCCCCccccCCHhhHHHHHHHHhcCCCHHHHHHHHHH
Q 038190 226 G-IYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLD 304 (531)
Q Consensus 226 g-~~p~~~~~~~li~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 304 (531)
- -.|+...+......+.+.....++.. ++.|++.+...... +.-....-..-...+.+.+++++|..++..
T Consensus 173 ~~~~~s~~~~e~se~~Ly~n~i~~E~g~-~q~ale~L~~~e~~-------i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~ 244 (700)
T KOG1156|consen 173 QNTSPSKEDYEHSELLLYQNQILIEAGS-LQKALEHLLDNEKQ-------IVDKLAFEETKADLLMKLGQLEEAVKVYRR 244 (700)
T ss_pred hccCCCHHHHHHHHHHHHHHHHHHHccc-HHHHHHHHHhhhhH-------HHHHHHHhhhHHHHHHHHhhHHhHHHHHHH
Confidence 3 35676666554433333222222211 33333344443222 111122233456677889999999999999
Q ss_pred HHhCCCCCCHHHHHHHHHH-HHhcCCHHHHH-HHHHHHHhcCCCCCHHHHHHH-HHHHHhcCCHHHHHHHHHHHHhCCCC
Q 038190 305 MKSRGIIPDVVVYSSLIDG-YCLMGRIDDAR-KLFVSIESEGCIPDTSSYNTL-INSYSKIEKVEEALSLYGEMISMGVR 381 (531)
Q Consensus 305 ~~~~~~~~~~~~~~~ll~~-~~~~g~~~~a~-~~~~~~~~~g~~p~~~~~~~l-i~~~~~~~~~~~a~~~~~~~~~~~~~ 381 (531)
+... .||..-|...+.. +.+..+.-++. .+|....+.= |....-..+ +.......-.+..-.++..+.+.|+.
T Consensus 245 Ll~r--nPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y--~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p 320 (700)
T KOG1156|consen 245 LLER--NPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKY--PRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVP 320 (700)
T ss_pred HHhh--CchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcC--cccccchhccHHHhCcchhHHHHHHHHHHHhhcCCC
Confidence 9887 5666666555544 43333333443 6666665531 111111111 11111122334444566666777765
Q ss_pred CCcccHHHHH------HHHHHHH--------hCC----------CCCCHHHH--HHHHHHHHcCCChHHHHHHHHHhhhC
Q 038190 382 PDNSCILEAA------ELFRTLH--------NTK----------FELDLTVF--NCLVDGLCKSWRLRSAWELFKKLPRY 435 (531)
Q Consensus 382 ~~~~~~~~a~------~~~~~~~--------~~~----------~~~~~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~ 435 (531)
+--.++..-. .+++++. ..| -+|+...| -.++..|-+.|+++.|..+++...+.
T Consensus 321 ~vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdH 400 (700)
T KOG1156|consen 321 SVFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDH 400 (700)
T ss_pred chhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhcc
Confidence 5411111000 0222221 111 14555554 45678888899999999999988874
Q ss_pred CCCCc-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChhHHHh
Q 038190 436 GPEPN-VVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMN 514 (531)
Q Consensus 436 g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~i~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 514 (531)
.|+ +..|-.=...+...|++++|..++++..+. + .+|..+-...+.-..++++.++|.+
T Consensus 401 --TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~el-----------------D-~aDR~INsKcAKYmLrAn~i~eA~~ 460 (700)
T KOG1156|consen 401 --TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQEL-----------------D-TADRAINSKCAKYMLRANEIEEAEE 460 (700)
T ss_pred --CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhc-----------------c-chhHHHHHHHHHHHHHccccHHHHH
Confidence 555 334445557788888888887777765543 2 3444444455555666667777777
Q ss_pred hHHHhhhcc
Q 038190 515 LLPSFLSRN 523 (531)
Q Consensus 515 ~~~~~~~~~ 523 (531)
++..+...+
T Consensus 461 ~~skFTr~~ 469 (700)
T KOG1156|consen 461 VLSKFTREG 469 (700)
T ss_pred HHHHhhhcc
Confidence 666655544
No 62
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.32 E-value=1.3e-09 Score=96.46 Aligned_cols=202 Identities=13% Similarity=-0.008 Sum_probs=140.3
Q ss_pred ChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCcchHHHHHHHHHHCCCCCChhhHHHHHH
Q 038190 86 FMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIR 165 (531)
Q Consensus 86 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 165 (531)
....+..+...+...|++++|...+++..+.. +.+...+..+...+...|+++.|...+++..+.... +...+..+..
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~~~ 107 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPN-NGDVLNNYGT 107 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHH
Confidence 34567777788888888888888888887654 445667777778888888888888888888776533 5566777778
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCCCCCcHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcC
Q 038190 166 GLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAV 245 (531)
Q Consensus 166 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~ 245 (531)
.+...|++++|...+++.......+ .....+..+...+...|++++|...|++...... .+...+..+...+...|
T Consensus 108 ~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~ 183 (234)
T TIGR02521 108 FLCQQGKYEQAMQQFEQAIEDPLYP---QPARSLENAGLCALKAGDFDKAEKYLTRALQIDP-QRPESLLELAELYYLRG 183 (234)
T ss_pred HHHHcccHHHHHHHHHHHHhccccc---cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-CChHHHHHHHHHHHHcC
Confidence 8888888888888888887642222 2345666677778888888888888888776422 24556666777777777
Q ss_pred ChhhhhcchHHHHHHHHHHHhCCCCCCccccCCHhhHHHHHHHHhcCCCHHHHHHHHHHHHh
Q 038190 246 NWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKS 307 (531)
Q Consensus 246 ~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 307 (531)
++++|.. .++...... +.+...+..+...+...|+.+.|..+.+.+..
T Consensus 184 ~~~~A~~-------~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 184 QYKDARA-------YLERYQQTY-------NQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred CHHHHHH-------HHHHHHHhC-------CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 7777777 444444332 23444555666666777777777777666543
No 63
>PF13041 PPR_2: PPR repeat family
Probab=99.31 E-value=5.4e-12 Score=79.95 Aligned_cols=50 Identities=44% Similarity=0.853 Sum_probs=44.9
Q ss_pred CcHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHh
Q 038190 194 PNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCC 243 (531)
Q Consensus 194 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~ 243 (531)
||+.+||++|.+|++.|++++|.++|++|.+.|+.||..||+.+|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 58889999999999999999999999999999999999999999988864
No 64
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.31 E-value=8.4e-08 Score=92.24 Aligned_cols=304 Identities=12% Similarity=0.050 Sum_probs=207.2
Q ss_pred HHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCcchHHHHHHHHHHCCCCCChhhHHHHHHHHHhc---
Q 038190 94 LGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQ--- 170 (531)
Q Consensus 94 i~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~--- 170 (531)
...+...|++++|++.++.-... +.............+.+.|+.++|..+|..+++.++. |..-|..+..+..-.
T Consensus 11 ~~il~e~g~~~~AL~~L~~~~~~-I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPd-n~~Yy~~L~~~~g~~~~~ 88 (517)
T PF12569_consen 11 NSILEEAGDYEEALEHLEKNEKQ-ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPD-NYDYYRGLEEALGLQLQL 88 (517)
T ss_pred HHHHHHCCCHHHHHHHHHhhhhh-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHhhhccc
Confidence 34567889999999999875543 3444556778888999999999999999999999643 555555666665332
Q ss_pred --CChHHHHHHHHHHHHcCCCCCCCCcHHhHHHHHHHHHhcCChh-HHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCh
Q 038190 171 --GKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVN-KVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNW 247 (531)
Q Consensus 171 --g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~ 247 (531)
.+.+....+++++... .| ...+...+.-.+.....+. .+..++..+..+|+++ +|+.+-..|....+.
T Consensus 89 ~~~~~~~~~~~y~~l~~~--yp----~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPs---lF~~lk~Ly~d~~K~ 159 (517)
T PF12569_consen 89 SDEDVEKLLELYDELAEK--YP----RSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPS---LFSNLKPLYKDPEKA 159 (517)
T ss_pred ccccHHHHHHHHHHHHHh--Cc----cccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCch---HHHHHHHHHcChhHH
Confidence 2567788899988764 33 3333333433333323333 3455666777778653 355555555533332
Q ss_pred hhhhcchHHHHHHHHHHHhCCCCCC----ccccCCHh--hHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCC-HHHHHHH
Q 038190 248 EDAKGNTSAALELHEEFVNGNGELG----VICHPDVL--SYCSIINSLCKDVLVDKAKELFLDMKSRGIIPD-VVVYSSL 320 (531)
Q Consensus 248 ~~a~~~~~~a~~~~~~~~~~~~~~~----~~~~~~~~--~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l 320 (531)
.-... .+..+...+...+.-.+ ..-+|+.. ++..+...|-..|++++|+++++...+. .|+ +..|..-
T Consensus 160 ~~i~~---l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h--tPt~~ely~~K 234 (517)
T PF12569_consen 160 AIIES---LVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH--TPTLVELYMTK 234 (517)
T ss_pred HHHHH---HHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCcHHHHHHH
Confidence 22222 22222333322221110 11234443 4456678888999999999999999887 455 6778888
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHhC
Q 038190 321 IDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNT 400 (531)
Q Consensus 321 l~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 400 (531)
...+-..|++.+|.+.++.....+.. |...=+-.+..+.++|+.++|.+++....+.+..|
T Consensus 235 arilKh~G~~~~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~------------------ 295 (517)
T PF12569_consen 235 ARILKHAGDLKEAAEAMDEARELDLA-DRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDP------------------ 295 (517)
T ss_pred HHHHHHCCCHHHHHHHHHHHHhCChh-hHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCc------------------
Confidence 88999999999999999999987654 77777778888999999999999998887766433
Q ss_pred CCCCCHH----HH--HHHHHHHHcCCChHHHHHHHHHhhh
Q 038190 401 KFELDLT----VF--NCLVDGLCKSWRLRSAWELFKKLPR 434 (531)
Q Consensus 401 ~~~~~~~----~~--~~l~~~~~~~g~~~~A~~~~~~~~~ 434 (531)
.-|.. .| .....+|.+.|++..|++.|....+
T Consensus 296 --~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k 333 (517)
T PF12569_consen 296 --LSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLK 333 (517)
T ss_pred --ccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 11222 22 4568899999999999999988765
No 65
>PF13041 PPR_2: PPR repeat family
Probab=99.30 E-value=7e-12 Score=79.41 Aligned_cols=50 Identities=26% Similarity=0.495 Sum_probs=44.0
Q ss_pred CChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHc
Q 038190 85 PFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCK 134 (531)
Q Consensus 85 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~ 134 (531)
||+.+||.+|.+|++.|++++|.++|++|.+.|+.||..||+.+|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 68888999999999999999999999999988989999999999888864
No 66
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.30 E-value=5.7e-10 Score=95.47 Aligned_cols=217 Identities=12% Similarity=0.102 Sum_probs=171.2
Q ss_pred hhHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHH-HHHHHH
Q 038190 280 LSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSY-NTLINS 358 (531)
Q Consensus 280 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~-~~li~~ 358 (531)
.--+.+.++|.+.|.+.+|...++...+. .|-+.||..|-.+|.+..++..|..++.+-.+. .|-.+|| .-+.+.
T Consensus 224 wWk~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~--fP~~VT~l~g~ARi 299 (478)
T KOG1129|consen 224 WWKQQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS--FPFDVTYLLGQARI 299 (478)
T ss_pred HHHHHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc--CCchhhhhhhhHHH
Confidence 33467889999999999999999988887 567788889999999999999999999998876 3444444 556677
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHhhhCCCC
Q 038190 359 YSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPE 438 (531)
Q Consensus 359 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~ 438 (531)
+...++.++|.++|+...+.. | .+++...++...|.-.++++.|+.+|+++++.|+.
T Consensus 300 ~eam~~~~~a~~lYk~vlk~~--~---------------------~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~ 356 (478)
T KOG1129|consen 300 HEAMEQQEDALQLYKLVLKLH--P---------------------INVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ 356 (478)
T ss_pred HHHHHhHHHHHHHHHHHHhcC--C---------------------ccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC
Confidence 888899999999998887642 2 26667777777777888888888888888887765
Q ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--------------------HhhHHHHHHHHHHHHHcCCCCCHHHHHH
Q 038190 439 PNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK--------------------IRECLKAIELLHKMAKRYVKPDEITVSI 498 (531)
Q Consensus 439 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------------------i~~~~~a~~~~~~~~~~~~~~~~~~~~~ 498 (531)
++..|+.+.-+|.-.++++-++.-|++.... ||++.-|.+.|+-.+..+. .....++.
T Consensus 357 -speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~-~h~ealnN 434 (478)
T KOG1129|consen 357 -SPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDA-QHGEALNN 434 (478)
T ss_pred -ChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCc-chHHHHHh
Confidence 6777777777777788888887777776655 4788888888887775442 24578999
Q ss_pred HHHHHhccCChhHHHhhHHHhhhcchh
Q 038190 499 LEELLNKDENCHECMNLLPSFLSRNQE 525 (531)
Q Consensus 499 l~~~~~~~g~~~~a~~~~~~~~~~~~~ 525 (531)
|.-.-.+.|++++|..+++......+.
T Consensus 435 LavL~~r~G~i~~Arsll~~A~s~~P~ 461 (478)
T KOG1129|consen 435 LAVLAARSGDILGARSLLNAAKSVMPD 461 (478)
T ss_pred HHHHHhhcCchHHHHHHHHHhhhhCcc
Confidence 999999999999999999886665543
No 67
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.28 E-value=2.9e-10 Score=97.25 Aligned_cols=232 Identities=14% Similarity=0.005 Sum_probs=180.3
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCcchHHHHHHHHHHCCCCCChhhHHHHHHHHHhc
Q 038190 91 NSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQ 170 (531)
Q Consensus 91 ~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 170 (531)
+.+.+.|.+.|-+.+|.+.+...++. .|-+.||..|-++|.+..++..|+.++.+.++.- +-++.......+.+-..
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~f-P~~VT~l~g~ARi~eam 303 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSF-PFDVTYLLGQARIHEAM 303 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcC-CchhhhhhhhHHHHHHH
Confidence 56778888999999999999888776 5677788889999999999999999998888762 22444445567888888
Q ss_pred CChHHHHHHHHHHHHcCCCCCCCCcHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChhhh
Q 038190 171 GKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDA 250 (531)
Q Consensus 171 g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a 250 (531)
++.++|.++++...+. .|. ++.+...+...|.-.++++.|+.+|+++.+.|+. +...|+.+.-+|.-.+.++-+
T Consensus 304 ~~~~~a~~lYk~vlk~--~~~---nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~ 377 (478)
T KOG1129|consen 304 EQQEDALQLYKLVLKL--HPI---NVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLV 377 (478)
T ss_pred HhHHHHHHHHHHHHhc--CCc---cceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhh
Confidence 9999999999998876 332 6667777778888889999999999999998887 778888888888888888888
Q ss_pred hcchHHHHHHHHHHHhCCCCCCccccCCHhhHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 038190 251 KGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRI 330 (531)
Q Consensus 251 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~ 330 (531)
+..++.|+... ...+ --...|-.+.......||+..|.+.|+....++-. +...++.|.-.-.+.|++
T Consensus 378 L~sf~RAlsta---t~~~--------~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~-h~ealnNLavL~~r~G~i 445 (478)
T KOG1129|consen 378 LPSFQRALSTA---TQPG--------QAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQ-HGEALNNLAVLAARSGDI 445 (478)
T ss_pred HHHHHHHHhhc---cCcc--------hhhhhhhccceeEEeccchHHHHHHHHHHhccCcc-hHHHHHhHHHHHhhcCch
Confidence 88555544432 1111 11335666777788889999999999888776432 567788887778888999
Q ss_pred HHHHHHHHHHHhc
Q 038190 331 DDARKLFVSIESE 343 (531)
Q Consensus 331 ~~a~~~~~~~~~~ 343 (531)
+.|..+++.....
T Consensus 446 ~~Arsll~~A~s~ 458 (478)
T KOG1129|consen 446 LGARSLLNAAKSV 458 (478)
T ss_pred HHHHHHHHHhhhh
Confidence 9999998887765
No 68
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.26 E-value=6.6e-08 Score=89.35 Aligned_cols=408 Identities=13% Similarity=0.067 Sum_probs=256.4
Q ss_pred CHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCcchHHHHHH
Q 038190 67 ELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALG 146 (531)
Q Consensus 67 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 146 (531)
++.-|.-+-+++...+- +...---++..+.-.|++++|..+...-.-. ..|..+......++.+..++++|..++.
T Consensus 31 ~y~~a~f~adkV~~l~~--dp~d~~~~aq~l~~~~~y~ra~~lit~~~le--~~d~~cryL~~~~l~~lk~~~~al~vl~ 106 (611)
T KOG1173|consen 31 RYKTALFWADKVAGLTN--DPADIYWLAQVLYLGRQYERAAHLITTYKLE--KRDIACRYLAAKCLVKLKEWDQALLVLG 106 (611)
T ss_pred hhhHHHHHHHHHHhccC--ChHHHHHHHHHHHhhhHHHHHHHHHHHhhhh--hhhHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 66777777777765543 3334445667777788888888877665332 4577778888888899999999999988
Q ss_pred HHHH--CCCCCChhh----------H-----HHH-------HHHHHhcCChHHHHHHHHHHHHcCCCCCCCCcHHhHHHH
Q 038190 147 RILR--KVFSPDVVT----------L-----GCL-------IRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASI 202 (531)
Q Consensus 147 ~~~~--~~~~~~~~~----------~-----~~l-------i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l 202 (531)
.... ..+.-+..+ + +.- ...|....+.++|...|.+.... |...|..+
T Consensus 107 ~~~~~~~~f~yy~~~~~~~l~~n~~~~~~~~~~essic~lRgk~y~al~n~~~ar~~Y~~Al~~--------D~~c~Ea~ 178 (611)
T KOG1173|consen 107 RGHVETNPFSYYEKDAANTLELNSAGEDLMINLESSICYLRGKVYVALDNREEARDKYKEALLA--------DAKCFEAF 178 (611)
T ss_pred ccchhhcchhhcchhhhceeccCcccccccccchhceeeeeeehhhhhccHHHHHHHHHHHHhc--------chhhHHHH
Confidence 3311 111111111 0 000 12233445567777777776653 33333322
Q ss_pred ---HHHHHhc-----------------C-ChhHHHHHHHHH----hhC------------CCCCCHhhHHHHHHHHHhcC
Q 038190 203 ---IDGLCKD-----------------G-FVNKVRVLFLDM----KGR------------GIYPDAFVYNSLIRVYCCAV 245 (531)
Q Consensus 203 ---~~~~~~~-----------------~-~~~~a~~~~~~m----~~~------------g~~p~~~~~~~li~~~~~~~ 245 (531)
+.+..-. + +.+....+|+.. ... +..-+.........-|...+
T Consensus 179 ~~lvs~~mlt~~Ee~~ll~~l~~a~~~~ed~e~l~~lyel~~~k~~n~~~~~r~~~~sl~~l~~~~dll~~~ad~~y~~c 258 (611)
T KOG1173|consen 179 EKLVSAHMLTAQEEFELLESLDLAMLTKEDVERLEILYELKLCKNRNEESLTRNEDESLIGLAENLDLLAEKADRLYYGC 258 (611)
T ss_pred HHHHHHHhcchhHHHHHHhcccHHhhhhhHHHHHHHHHHhhhhhhccccccccCchhhhhhhhhcHHHHHHHHHHHHHcC
Confidence 2221111 1 111111222211 000 11122333333344455555
Q ss_pred ChhhhhcchHHHHHHHHHHHhCCCCCCccccCCHhhHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 038190 246 NWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYC 325 (531)
Q Consensus 246 ~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 325 (531)
++.+..+ +++.+.+.. ++....+..-|.++...|+..+-..+=.++.+. .+....+|-++.-.|.
T Consensus 259 ~f~~c~k-------it~~lle~d-------pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aVg~YYl 323 (611)
T KOG1173|consen 259 RFKECLK-------ITEELLEKD-------PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAVGCYYL 323 (611)
T ss_pred hHHHHHH-------HhHHHHhhC-------CCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhHHHHHH
Confidence 6655555 777777765 566666777778888999888877777777776 3446788888888888
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh--CC-CCCC---------cccHHHHHHH
Q 038190 326 LMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMIS--MG-VRPD---------NSCILEAAEL 393 (531)
Q Consensus 326 ~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~--~~-~~~~---------~~~~~~a~~~ 393 (531)
..|+..+|++.|.+....+.. -...|-.+...|+-.|..++|+..+...-+ .| ..|. .++++.|.+.
T Consensus 324 ~i~k~seARry~SKat~lD~~-fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLAe~F 402 (611)
T KOG1173|consen 324 MIGKYSEARRYFSKATTLDPT-FGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLAEKF 402 (611)
T ss_pred HhcCcHHHHHHHHHHhhcCcc-ccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHHHHH
Confidence 889999999999987765332 356788889999999999999998877654 22 2232 5667778888
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHhhhC--CC----CCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 038190 394 FRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRY--GP----EPNVVTYTVMICGLCIEGGIEKAYDLLPDM 467 (531)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--g~----~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 467 (531)
|.++....+ .|+..++-+.-.....+.+.+|..+|+..+.. .+ .....+++.|..+|.+.+.+++|+..+++.
T Consensus 403 f~~A~ai~P-~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~a 481 (611)
T KOG1173|consen 403 FKQALAIAP-SDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKA 481 (611)
T ss_pred HHHHHhcCC-CcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHH
Confidence 877776543 37777787877777888888888888877631 01 113446777778888888888887777665
Q ss_pred HHHHhhHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChhHHHhhHHHhhh
Q 038190 468 EEKIRECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLLPSFLS 521 (531)
Q Consensus 468 ~~~i~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 521 (531)
... .+.+..++.+++-.|...|+++.|.+.+.+-..
T Consensus 482 L~l------------------~~k~~~~~asig~iy~llgnld~Aid~fhKaL~ 517 (611)
T KOG1173|consen 482 LLL------------------SPKDASTHASIGYIYHLLGNLDKAIDHFHKALA 517 (611)
T ss_pred HHc------------------CCCchhHHHHHHHHHHHhcChHHHHHHHHHHHh
Confidence 543 244666677777777777777777776666433
No 69
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.26 E-value=8.1e-08 Score=92.36 Aligned_cols=287 Identities=12% Similarity=0.044 Sum_probs=191.5
Q ss_pred cCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcc-----CCcc
Q 038190 65 EVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKM-----IGVS 139 (531)
Q Consensus 65 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~-----g~~~ 139 (531)
.|++++|+..++..... +.-...........+.+.|+.++|..+|..+++.+ +.|..-|..+..+..-. .+.+
T Consensus 17 ~g~~~~AL~~L~~~~~~-I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN-Pdn~~Yy~~L~~~~g~~~~~~~~~~~ 94 (517)
T PF12569_consen 17 AGDYEEALEHLEKNEKQ-ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN-PDNYDYYRGLEEALGLQLQLSDEDVE 94 (517)
T ss_pred CCCHHHHHHHHHhhhhh-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHhhhcccccccHH
Confidence 36999999999886553 22234455667778899999999999999999986 33444455555554222 2466
Q ss_pred hHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChH-HHHHHHHHHHHcCCCCCCCCcHHhHHHHHHHHHhcCChhHHHHH
Q 038190 140 DAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFT-EASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVL 218 (531)
Q Consensus 140 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~-~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 218 (531)
....+|+.+...- |...+...+.-.+.....+. .+...+..+...|+. .+|+.|-..|.......-...+
T Consensus 95 ~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvP-------slF~~lk~Ly~d~~K~~~i~~l 165 (517)
T PF12569_consen 95 KLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVP-------SLFSNLKPLYKDPEKAAIIESL 165 (517)
T ss_pred HHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCc-------hHHHHHHHHHcChhHHHHHHHH
Confidence 7788888887653 33333332322222222333 344455566665533 3677787777766666666666
Q ss_pred HHHHhhC----C----------CCCCHh--hHHHHHHHHHhcCChhhhhcchHHHHHHHHHHHhCCCCCCccccCCHhhH
Q 038190 219 FLDMKGR----G----------IYPDAF--VYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSY 282 (531)
Q Consensus 219 ~~~m~~~----g----------~~p~~~--~~~~li~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (531)
+...... + -.|+.. ++..+...|...|++++|+. +++...... +..+..|
T Consensus 166 ~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~-------~Id~aI~ht-------Pt~~ely 231 (517)
T PF12569_consen 166 VEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALE-------YIDKAIEHT-------PTLVELY 231 (517)
T ss_pred HHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHH-------HHHHHHhcC-------CCcHHHH
Confidence 6665432 1 123443 34555667778888888888 555555543 2336678
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHH------HH--HH
Q 038190 283 CSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTS------SY--NT 354 (531)
Q Consensus 283 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~------~~--~~ 354 (531)
..-...+-+.|++.+|.+.++........ |...-+.....+.++|+.++|.+++..+.+.+..|-.. .| ..
T Consensus 232 ~~KarilKh~G~~~~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e 310 (517)
T PF12569_consen 232 MTKARILKHAGDLKEAAEAMDEARELDLA-DRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETE 310 (517)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhCChh-hHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHH
Confidence 88899999999999999999999887544 67777778888899999999999999988776433221 22 34
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHh
Q 038190 355 LINSYSKIEKVEEALSLYGEMIS 377 (531)
Q Consensus 355 li~~~~~~~~~~~a~~~~~~~~~ 377 (531)
...+|.+.|++..|+..|..+.+
T Consensus 311 ~a~a~~r~~~~~~ALk~~~~v~k 333 (517)
T PF12569_consen 311 CAEAYLRQGDYGLALKRFHAVLK 333 (517)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHH
Confidence 56788888998888877665543
No 70
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.25 E-value=6.5e-07 Score=79.72 Aligned_cols=309 Identities=13% Similarity=0.013 Sum_probs=213.1
Q ss_pred HHHHHHHHh--cCChHHHHHHHHHHHHcCCCCCCCCcHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHhh-HHHH
Q 038190 161 GCLIRGLCM--QGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFV-YNSL 237 (531)
Q Consensus 161 ~~li~~~~~--~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~-~~~l 237 (531)
..-+.+++. .++...|...+-.+.....-+ .|+.....+...+...|+.++|...|++.... .|+..+ ....
T Consensus 198 s~wika~Aq~~~~~hs~a~~t~l~le~~~~lr---~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~--dpy~i~~MD~Y 272 (564)
T KOG1174|consen 198 SKWIKALAQMFNFKHSDASQTFLMLHDNTTLR---CNEHLMMALGKCLYYNGDYFQAEDIFSSTLCA--NPDNVEAMDLY 272 (564)
T ss_pred HHHHHHHHHHHhcccchhhhHHHHHHhhccCC---ccHHHHHHHhhhhhhhcCchHHHHHHHHHhhC--ChhhhhhHHHH
Confidence 334444444 355555555554444433344 37888999999999999999999999988764 222221 1111
Q ss_pred HHHHHhcCChhhhhcchHHHHHHHHHHHhCCCCCCccccCCHhhHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHH
Q 038190 238 IRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVY 317 (531)
Q Consensus 238 i~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 317 (531)
.-.+...|+.++... +...+.... .-+...|..-+..+...++++.|+.+-++..+.... +...|
T Consensus 273 a~LL~~eg~~e~~~~-------L~~~Lf~~~-------~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r-~~~al 337 (564)
T KOG1174|consen 273 AVLLGQEGGCEQDSA-------LMDYLFAKV-------KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPR-NHEAL 337 (564)
T ss_pred HHHHHhccCHhhHHH-------HHHHHHhhh-------hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcc-cchHH
Confidence 223345566666555 555554432 123334544555566778899999888887765322 33444
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh----C-------C---CCCC
Q 038190 318 SSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMIS----M-------G---VRPD 383 (531)
Q Consensus 318 ~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~----~-------~---~~~~ 383 (531)
-.-...+...|+++.|.-.|+......+ .+..+|..|+.+|...|.+.+|.-+-..... . | ..|+
T Consensus 338 ilKG~lL~~~~R~~~A~IaFR~Aq~Lap-~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~d 416 (564)
T KOG1174|consen 338 ILKGRLLIALERHTQAVIAFRTAQMLAP-YRLEIYRGLFHSYLAQKRFKEANALANWTIRLFQNSARSLTLFGTLVLFPD 416 (564)
T ss_pred HhccHHHHhccchHHHHHHHHHHHhcch-hhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcchhhhhhhcceeeccC
Confidence 4444567788999999999998877532 3788999999999999999998765544322 1 1 2355
Q ss_pred cccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHcCCHHHHHHH
Q 038190 384 NSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDL 463 (531)
Q Consensus 384 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~ 463 (531)
...-++|.++++......+. -....+.+...+...|....+..++++... ..||....+.|.+.+...+.+.+|++.
T Consensus 417 p~~rEKAKkf~ek~L~~~P~-Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~--~~~D~~LH~~Lgd~~~A~Ne~Q~am~~ 493 (564)
T KOG1174|consen 417 PRMREKAKKFAEKSLKINPI-YTPAVNLIAELCQVEGPTKDIIKLLEKHLI--IFPDVNLHNHLGDIMRAQNEPQKAMEY 493 (564)
T ss_pred chhHHHHHHHHHhhhccCCc-cHHHHHHHHHHHHhhCccchHHHHHHHHHh--hccccHHHHHHHHHHHHhhhHHHHHHH
Confidence 77789999999888765422 345778889999999999999999999887 478999999999999999999999999
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHcCCCCCH
Q 038190 464 LPDMEEKIRECLKAIELLHKMAKRYVKPDE 493 (531)
Q Consensus 464 ~~~~~~~i~~~~~a~~~~~~~~~~~~~~~~ 493 (531)
|....+.=.+.+.+++=++.|.+..-+||.
T Consensus 494 y~~ALr~dP~~~~sl~Gl~~lEK~~~~~DA 523 (564)
T KOG1174|consen 494 YYKALRQDPKSKRTLRGLRLLEKSDDESDA 523 (564)
T ss_pred HHHHHhcCccchHHHHHHHHHHhccCCCCc
Confidence 988877644555666666666655445443
No 71
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.25 E-value=8.5e-07 Score=83.41 Aligned_cols=171 Identities=12% Similarity=0.076 Sum_probs=99.4
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCCCcHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHhhHHH
Q 038190 157 VVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNS 236 (531)
Q Consensus 157 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ 236 (531)
+..|-..+..+...|++......|++.... -| +.....+|...+......+-++-+..+|++..+. ++..-.-
T Consensus 102 pRIwl~Ylq~l~~Q~~iT~tR~tfdrALra--Lp-vtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~----~P~~~ee 174 (835)
T KOG2047|consen 102 PRIWLDYLQFLIKQGLITRTRRTFDRALRA--LP-VTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV----APEAREE 174 (835)
T ss_pred CHHHHHHHHHHHhcchHHHHHHHHHHHHHh--Cc-hHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc----CHHHHHH
Confidence 346666677777777777777777776653 11 1123446777777777777777788888777764 4444566
Q ss_pred HHHHHHhcCChhhhhcchHHHHHHHHHHHhCCCCCCccccCCHhhHHHHHHHHhcCCCHHH---HHHHHHHHHhCCCCCC
Q 038190 237 LIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDK---AKELFLDMKSRGIIPD 313 (531)
Q Consensus 237 li~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~---a~~~~~~~~~~~~~~~ 313 (531)
.|..++..+++++|.+ .+..+.......+..-+.+...|..+.....++-+.-. ..++++.+... -+|
T Consensus 175 yie~L~~~d~~~eaa~-------~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~r--ftD 245 (835)
T KOG2047|consen 175 YIEYLAKSDRLDEAAQ-------RLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRR--FTD 245 (835)
T ss_pred HHHHHHhccchHHHHH-------HHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhccc--CcH
Confidence 6777777777777777 55555443322222123344455555555544433222 23333333322 122
Q ss_pred --HHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 038190 314 --VVVYSSLIDGYCLMGRIDDARKLFVSIESE 343 (531)
Q Consensus 314 --~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 343 (531)
...|..|.+.|.+.|.+++|.++|++..+.
T Consensus 246 q~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~ 277 (835)
T KOG2047|consen 246 QLGFLWCSLADYYIRSGLFEKARDVYEEAIQT 277 (835)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHh
Confidence 345667777777777777777777766553
No 72
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.25 E-value=8.1e-08 Score=83.53 Aligned_cols=359 Identities=9% Similarity=0.026 Sum_probs=197.9
Q ss_pred CHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCcchHHHHHH
Q 038190 67 ELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALG 146 (531)
Q Consensus 67 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 146 (531)
++..|+.+++--...+..-...+-.-+...+.+.|++++|+..|..+.+.. .++...+..|.-++.-.|.+.+|..+-.
T Consensus 37 DytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~Y~eA~~~~~ 115 (557)
T KOG3785|consen 37 DYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQYIEAKSIAE 115 (557)
T ss_pred cchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHHHHHHHHHHh
Confidence 899999998877654433222333445566778999999999999988755 6777777777777777788888887765
Q ss_pred HHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCCCcHHhHHHHHHHHHhcCChhHHHHHHHHHhhCC
Q 038190 147 RILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRG 226 (531)
Q Consensus 147 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g 226 (531)
+..+ ++-.-..++..--+.++-++-..+-+.+.. ...---+|....-..-.+++|+++|......
T Consensus 116 ka~k-----~pL~~RLlfhlahklndEk~~~~fh~~LqD---------~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~d- 180 (557)
T KOG3785|consen 116 KAPK-----TPLCIRLLFHLAHKLNDEKRILTFHSSLQD---------TLEDQLSLASVHYMRMHYQEAIDVYKRVLQD- 180 (557)
T ss_pred hCCC-----ChHHHHHHHHHHHHhCcHHHHHHHHHHHhh---------hHHHHHhHHHHHHHHHHHHHHHHHHHHHHhc-
Confidence 5322 333333444555566776665555555443 1122223333333444677888888877654
Q ss_pred CCCCHhhHHHHHH-HHHhcCChhhhhcchHHHHHHHHHHHhCCCCCCccccCCHhhHHHHHHHHhc--CCC---------
Q 038190 227 IYPDAFVYNSLIR-VYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCK--DVL--------- 294 (531)
Q Consensus 227 ~~p~~~~~~~li~-~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~--~~~--------- 294 (531)
.|+-...|.-+. +|.+..-++-+.+ +++-....- +.+..+.|..+....+ +|+
T Consensus 181 -n~ey~alNVy~ALCyyKlDYydvsqe-------vl~vYL~q~-------pdStiA~NLkacn~fRl~ngr~ae~E~k~l 245 (557)
T KOG3785|consen 181 -NPEYIALNVYMALCYYKLDYYDVSQE-------VLKVYLRQF-------PDSTIAKNLKACNLFRLINGRTAEDEKKEL 245 (557)
T ss_pred -ChhhhhhHHHHHHHHHhcchhhhHHH-------HHHHHHHhC-------CCcHHHHHHHHHHHhhhhccchhHHHHHHH
Confidence 233333443332 3444433333322 554444432 2233333333322222 111
Q ss_pred ------------------------HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHH
Q 038190 295 ------------------------VDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTS 350 (531)
Q Consensus 295 ------------------------~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~ 350 (531)
-+.|++++--+.+. . +..-..|+-.|.+.+++.+|..+.+++.-. .|-..
T Consensus 246 adN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~--I--PEARlNL~iYyL~q~dVqeA~~L~Kdl~Pt--tP~Ey 319 (557)
T KOG3785|consen 246 ADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMKH--I--PEARLNLIIYYLNQNDVQEAISLCKDLDPT--TPYEY 319 (557)
T ss_pred HhcccccchhHHHHHHcCeEEEeCCccHHHhchHHHhh--C--hHhhhhheeeecccccHHHHHHHHhhcCCC--ChHHH
Confidence 12222222222211 1 122334555688899999999887765422 12222
Q ss_pred HHHHHHHHHHhcC-------CHHHHHHHHHHHHhCCCCCC--------------cccHHHHHHHHHHHHhCCCCCCHHHH
Q 038190 351 SYNTLINSYSKIE-------KVEEALSLYGEMISMGVRPD--------------NSCILEAAELFRTLHNTKFELDLTVF 409 (531)
Q Consensus 351 ~~~~li~~~~~~~-------~~~~a~~~~~~~~~~~~~~~--------------~~~~~~a~~~~~~~~~~~~~~~~~~~ 409 (531)
....++ ++..| ...-|.+.|+-.-+.+..-| ...++..+..+..+...-.. |...-
T Consensus 320 ilKgvv--~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~N-dD~Fn 396 (557)
T KOG3785|consen 320 ILKGVV--FAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTN-DDDFN 396 (557)
T ss_pred HHHHHH--HHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-cchhh
Confidence 222222 22222 34445555554433333322 22234444444444433223 33333
Q ss_pred HHHHHHHHcCCChHHHHHHHHHhhhCCCCCcHHHHH-HHHHHHHHcCCHHHHHHHHHH
Q 038190 410 NCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYT-VMICGLCIEGGIEKAYDLLPD 466 (531)
Q Consensus 410 ~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~-~l~~~~~~~g~~~~A~~~~~~ 466 (531)
-.+.++++..|++.+|+++|-++....++ |..+|. .|..+|.+.++++.|..++-+
T Consensus 397 ~N~AQAk~atgny~eaEelf~~is~~~ik-n~~~Y~s~LArCyi~nkkP~lAW~~~lk 453 (557)
T KOG3785|consen 397 LNLAQAKLATGNYVEAEELFIRISGPEIK-NKILYKSMLARCYIRNKKPQLAWDMMLK 453 (557)
T ss_pred hHHHHHHHHhcChHHHHHHHhhhcChhhh-hhHHHHHHHHHHHHhcCCchHHHHHHHh
Confidence 35788999999999999999888765444 556665 456788899999988766644
No 73
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.23 E-value=5.8e-07 Score=84.62 Aligned_cols=377 Identities=14% Similarity=0.054 Sum_probs=242.3
Q ss_pred CcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCcchHHH
Q 038190 64 GEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFV 143 (531)
Q Consensus 64 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~ 143 (531)
..|+.++|........+.++. +.+.|+.+.-.+-...++++|++.|......+ +.|...+.-+.-.-++.|+++....
T Consensus 53 ~lg~~~ea~~~vr~glr~d~~-S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~-~dN~qilrDlslLQ~QmRd~~~~~~ 130 (700)
T KOG1156|consen 53 CLGKKEEAYELVRLGLRNDLK-SHVCWHVLGLLQRSDKKYDEAIKCYRNALKIE-KDNLQILRDLSLLQIQMRDYEGYLE 130 (700)
T ss_pred cccchHHHHHHHHHHhccCcc-cchhHHHHHHHHhhhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHHHhhhhHHH
Confidence 367999999999988886665 88899999999989999999999999999886 6677888888888888999999998
Q ss_pred HHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCCCcHHhHHHHH------HHHHhcCChhHHHH
Q 038190 144 ALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASII------DGLCKDGFVNKVRV 217 (531)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~------~~~~~~~~~~~a~~ 217 (531)
......+..+. ....|..+..++.-.|+...|..++++..+....+ |+...+.... ......|..+.|.+
T Consensus 131 tr~~LLql~~~-~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~---~s~~~~e~se~~Ly~n~i~~E~g~~q~ale 206 (700)
T KOG1156|consen 131 TRNQLLQLRPS-QRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTS---PSKEDYEHSELLLYQNQILIEAGSLQKALE 206 (700)
T ss_pred HHHHHHHhhhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC---CCHHHHHHHHHHHHHHHHHHHcccHHHHHH
Confidence 88888877432 55688888889999999999999999998764312 3444444332 34456788888887
Q ss_pred HHHHHhhCCCCCCHhh-HHHHHHHHHhcCChhhhhcchHHHHHHHHHHHhCCCCCCccccCCHhhHHHHHHHHh-cCCCH
Q 038190 218 LFLDMKGRGIYPDAFV-YNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLC-KDVLV 295 (531)
Q Consensus 218 ~~~~m~~~g~~p~~~~-~~~li~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~-~~~~~ 295 (531)
.+..-... + .|... -..-...+.+.+++++|.. ++..+.... ||...|...+..+. +..+.
T Consensus 207 ~L~~~e~~-i-~Dkla~~e~ka~l~~kl~~lEeA~~-------~y~~Ll~rn--------Pdn~~Yy~~l~~~lgk~~d~ 269 (700)
T KOG1156|consen 207 HLLDNEKQ-I-VDKLAFEETKADLLMKLGQLEEAVK-------VYRRLLERN--------PDNLDYYEGLEKALGKIKDM 269 (700)
T ss_pred HHHhhhhH-H-HHHHHHhhhHHHHHHHHhhHHhHHH-------HHHHHHhhC--------chhHHHHHHHHHHHHHHhhh
Confidence 77655432 1 12222 2233455667777777777 999998876 66666665554444 44444
Q ss_pred HHHH-HHHHHHHhCCCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHH----HH
Q 038190 296 DKAK-ELFLDMKSRGIIPDVVVYSSLIDGYCL-MGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEE----AL 369 (531)
Q Consensus 296 ~~a~-~~~~~~~~~~~~~~~~~~~~ll~~~~~-~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~~~~~~----a~ 369 (531)
-++. .+|....+.- |....-..+--.... ..-.+...+.+..+.+.|+.+ ++..+...|-.-...+- +.
T Consensus 270 ~~~lk~ly~~ls~~y--~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~---vf~dl~SLyk~p~k~~~le~Lvt 344 (700)
T KOG1156|consen 270 LEALKALYAILSEKY--PRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPS---VFKDLRSLYKDPEKVAFLEKLVT 344 (700)
T ss_pred HHHHHHHHHHHhhcC--cccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCc---hhhhhHHHHhchhHhHHHHHHHH
Confidence 4444 6666655441 111111111111111 122334455666677777643 23333333322111110 11
Q ss_pred HHHHHHHhCCC----------CCC---------------cccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHH
Q 038190 370 SLYGEMISMGV----------RPD---------------NSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRS 424 (531)
Q Consensus 370 ~~~~~~~~~~~----------~~~---------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 424 (531)
.+...+...|. .|. .++++.|...++.+.+.-+. -+..|..-.+.+..+|++++
T Consensus 345 ~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHTPT-liEly~~KaRI~kH~G~l~e 423 (700)
T KOG1156|consen 345 SYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHTPT-LIELYLVKARIFKHAGLLDE 423 (700)
T ss_pred HHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCch-HHHHHHHHHHHHHhcCChHH
Confidence 11111111111 111 67788898888888875321 23456666799999999999
Q ss_pred HHHHHHHhhhCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 038190 425 AWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK 470 (531)
Q Consensus 425 A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 470 (531)
|..++++..+.. .+|...-..-..-..++++.++|.++.....+.
T Consensus 424 Aa~~l~ea~elD-~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~ 468 (700)
T KOG1156|consen 424 AAAWLDEAQELD-TADRAINSKCAKYMLRANEIEEAEEVLSKFTRE 468 (700)
T ss_pred HHHHHHHHHhcc-chhHHHHHHHHHHHHHccccHHHHHHHHHhhhc
Confidence 999999998753 345444335566667889999998877665543
No 74
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.19 E-value=5.1e-08 Score=88.43 Aligned_cols=341 Identities=14% Similarity=0.087 Sum_probs=211.4
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC-HhhHHHHHHHHHccCCcchHHHHHHHHHHCCCCCChhhHHHHHHHHH
Q 038190 90 FNSLLGALAGKKYYVNFICLSERLNTIGLLPD-FVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLC 168 (531)
Q Consensus 90 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 168 (531)
+....+-|.++|.+++|++.|.+.++. .|| +..|.....+|...|+|+.+.+.-...++..+. -+.++..-.+++-
T Consensus 118 lK~~GN~~f~~kkY~eAIkyY~~AI~l--~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~-Y~KAl~RRA~A~E 194 (606)
T KOG0547|consen 118 LKTKGNKFFRNKKYDEAIKYYTQAIEL--CPDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPD-YVKALLRRASAHE 194 (606)
T ss_pred HHhhhhhhhhcccHHHHHHHHHHHHhc--CCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcH-HHHHHHHHHHHHH
Confidence 344456688999999999999999987 577 778889999999999999999988888876432 3446666677778
Q ss_pred hcCChHHHHHHHHHHHHcCCCCCCCCcHHhHHHHHHHHHhcCChhHHHHHHH--------H-HhhC--CCCCCHhhHHHH
Q 038190 169 MQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFL--------D-MKGR--GIYPDAFVYNSL 237 (531)
Q Consensus 169 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~--------~-m~~~--g~~p~~~~~~~l 237 (531)
..|++++|+.=..-. .+..++....-.-.+.++++ + +.+. .+.|+.....+.
T Consensus 195 ~lg~~~eal~D~tv~-----------------ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~sy 257 (606)
T KOG0547|consen 195 QLGKFDEALFDVTVL-----------------CILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASY 257 (606)
T ss_pred hhccHHHHHHhhhHH-----------------HHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHH
Confidence 888888775433222 12222222222222222222 2 2212 233454444433
Q ss_pred HHHHHhcCChhhhhcchHHHHHHHHHHHhCCCCCCccccCCHhhHHHHHHHHhc-----CCCHHHHHHHHHHHHhCC-CC
Q 038190 238 IRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCK-----DVLVDKAKELFLDMKSRG-II 311 (531)
Q Consensus 238 i~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~-----~~~~~~a~~~~~~~~~~~-~~ 311 (531)
...+... ....+ ..+.......+..++.. ...+..|.+.+.+-.... ..
T Consensus 258 f~sF~~~---------------~~~~~----------~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~ 312 (606)
T KOG0547|consen 258 FGSFHAD---------------PKPLF----------DNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESS 312 (606)
T ss_pred Hhhcccc---------------ccccc----------cCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhh
Confidence 3332211 00000 00111111122211111 112333333332211110 01
Q ss_pred C--C---------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 038190 312 P--D---------VVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGV 380 (531)
Q Consensus 312 ~--~---------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~ 380 (531)
+ + ..+.......+.-.|+.-.|..-|+..+.....++ ..|--+...|....+.++....|.+..+.
T Consensus 313 ~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~~~~~-~lyI~~a~~y~d~~~~~~~~~~F~~A~~l-- 389 (606)
T KOG0547|consen 313 LSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAIKLDPAFN-SLYIKRAAAYADENQSEKMWKDFNKAEDL-- 389 (606)
T ss_pred ccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHHhcCcccc-hHHHHHHHHHhhhhccHHHHHHHHHHHhc--
Confidence 1 1 11222222234557999999999999998765533 33777788899999999999999998763
Q ss_pred CCCcccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHhhhCCCCC-cHHHHHHHHHHHHHcCCHHH
Q 038190 381 RPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEP-NVVTYTVMICGLCIEGGIEK 459 (531)
Q Consensus 381 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~ 459 (531)
.|. |+.+|-.-.+.+.-.+++++|..=|++.+.. .| +...|..+..+..+.+++++
T Consensus 390 dp~---------------------n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L--~pe~~~~~iQl~~a~Yr~~k~~~ 446 (606)
T KOG0547|consen 390 DPE---------------------NPDVYYHRGQMRFLLQQYEEAIADFQKAISL--DPENAYAYIQLCCALYRQHKIAE 446 (606)
T ss_pred CCC---------------------CCchhHhHHHHHHHHHHHHHHHHHHHHHhhc--ChhhhHHHHHHHHHHHHHHHHHH
Confidence 343 7778888889999999999999999999984 44 45667777777778899999
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChhHHHhhHHHh
Q 038190 460 AYDLLPDMEEKIRECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLLPSF 519 (531)
Q Consensus 460 A~~~~~~~~~~i~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 519 (531)
++..|++.+++ ++..+..|+....++...+++++|.+.++..
T Consensus 447 ~m~~Fee~kkk------------------FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~a 488 (606)
T KOG0547|consen 447 SMKTFEEAKKK------------------FPNCPEVYNLFAEILTDQQQFDKAVKQYDKA 488 (606)
T ss_pred HHHHHHHHHHh------------------CCCCchHHHHHHHHHhhHHhHHHHHHHHHHH
Confidence 99988887765 5555667777777777777777777766653
No 75
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.19 E-value=3.2e-08 Score=91.33 Aligned_cols=276 Identities=13% Similarity=0.047 Sum_probs=214.2
Q ss_pred cCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCcchHHHH
Q 038190 65 EVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVA 144 (531)
Q Consensus 65 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~ 144 (531)
.+++.+...+++.+.+..|. ....+..-|..+...|+..+...+-.+|++.- |-.+.+|-++.-.|.-.|...+|.+.
T Consensus 257 ~c~f~~c~kit~~lle~dpf-h~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y-P~~a~sW~aVg~YYl~i~k~seARry 334 (611)
T KOG1173|consen 257 GCRFKECLKITEELLEKDPF-HLPCLPLHIACLYELGKSNKLFLLSHKLVDLY-PSKALSWFAVGCYYLMIGKYSEARRY 334 (611)
T ss_pred cChHHHHHHHhHHHHhhCCC-CcchHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCCcchhhHHHHHHHhcCcHHHHHH
Confidence 34899999999999887664 55566677778888999888888888888774 55677999999999989999999999
Q ss_pred HHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCCCcHHhHHHHHHHHHhcCChhHHHHHHHHHhh
Q 038190 145 LGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKG 224 (531)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 224 (531)
|.+....... -...|-.+...|+-.|..++|+..+...-+. -++ ...-+--+.--|.+.++.+.|.++|.+...
T Consensus 335 ~SKat~lD~~-fgpaWl~fghsfa~e~EhdQAmaaY~tAarl--~~G---~hlP~LYlgmey~~t~n~kLAe~Ff~~A~a 408 (611)
T KOG1173|consen 335 FSKATTLDPT-FGPAWLAFGHSFAGEGEHDQAMAAYFTAARL--MPG---CHLPSLYLGMEYMRTNNLKLAEKFFKQALA 408 (611)
T ss_pred HHHHhhcCcc-ccHHHHHHhHHhhhcchHHHHHHHHHHHHHh--ccC---CcchHHHHHHHHHHhccHHHHHHHHHHHHh
Confidence 9988765322 3458999999999999999999998887664 222 111233355568889999999999999886
Q ss_pred CCCCCCHhhHHHHHHHHHhcCChhhhhcchHHHHHHHHHHHhCCCCCCccccCCHhhHHHHHHHHhcCCCHHHHHHHHHH
Q 038190 225 RGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLD 304 (531)
Q Consensus 225 ~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 304 (531)
. .+-|+..++-+.-.....+.+.+|...++.++...+...... .....+++.+..+|.+.+.+++|+..+++
T Consensus 409 i-~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~-------~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~ 480 (611)
T KOG1173|consen 409 I-APSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEK-------IFWEPTLNNLGHAYRKLNKYEEAIDYYQK 480 (611)
T ss_pred c-CCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccc-------cchhHHHHhHHHHHHHHhhHHHHHHHHHH
Confidence 4 233677777777667778888888886666665444443332 23566789999999999999999999999
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 038190 305 MKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSY 359 (531)
Q Consensus 305 ~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~ 359 (531)
..... +-+..++..+.-.|...|+++.|.+.|.+.+.. .|+-.+-..++..+
T Consensus 481 aL~l~-~k~~~~~asig~iy~llgnld~Aid~fhKaL~l--~p~n~~~~~lL~~a 532 (611)
T KOG1173|consen 481 ALLLS-PKDASTHASIGYIYHLLGNLDKAIDHFHKALAL--KPDNIFISELLKLA 532 (611)
T ss_pred HHHcC-CCchhHHHHHHHHHHHhcChHHHHHHHHHHHhc--CCccHHHHHHHHHH
Confidence 88874 448899999999999999999999999998764 57776666666543
No 76
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.16 E-value=3.2e-08 Score=89.96 Aligned_cols=224 Identities=11% Similarity=-0.050 Sum_probs=151.5
Q ss_pred CCHHHHHHHHHHHHHcCC-CC--ChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCcchHH
Q 038190 66 VELNDALCFFNYMIHMQP-TP--FMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAF 142 (531)
Q Consensus 66 g~~~~A~~~~~~~~~~~~-~~--~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~ 142 (531)
+..+.++..+.+++...+ .| ....|..+...+...|++++|...|++..+.. +.+...|+.+...+...|+++.|.
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~ 118 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAY 118 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 367888888888876432 22 23567788888999999999999999998875 556789999999999999999999
Q ss_pred HHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCCCcHHhHHHHHHHHHhcCChhHHHHHHHHH
Q 038190 143 VALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDM 222 (531)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m 222 (531)
..|++.++..+. +..+|..+..++...|++++|++.|++.... .|+ +.. .......+...++.++|...|.+.
T Consensus 119 ~~~~~Al~l~P~-~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~--~P~---~~~-~~~~~~l~~~~~~~~~A~~~l~~~ 191 (296)
T PRK11189 119 EAFDSVLELDPT-YNYAYLNRGIALYYGGRYELAQDDLLAFYQD--DPN---DPY-RALWLYLAESKLDPKQAKENLKQR 191 (296)
T ss_pred HHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCC---CHH-HHHHHHHHHccCCHHHHHHHHHHH
Confidence 999999987543 5678888888999999999999999999876 332 221 122222344567899999999775
Q ss_pred hhCCCCCCHhhHHHHHHHHHhcCChhhhhcchHHHHHHHHHHHhCCCCCCccccCCHhhHHHHHHHHhcCCCHHHHHHHH
Q 038190 223 KGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELF 302 (531)
Q Consensus 223 ~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~ 302 (531)
... ..|+...+ . ......|+...+ . .+..+...........+....+|..+...+.+.|++++|...|
T Consensus 192 ~~~-~~~~~~~~-~--~~~~~lg~~~~~-~-------~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~ 259 (296)
T PRK11189 192 YEK-LDKEQWGW-N--IVEFYLGKISEE-T-------LMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALF 259 (296)
T ss_pred Hhh-CCccccHH-H--HHHHHccCCCHH-H-------HHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 543 22332222 2 222334554433 2 2222221110000001123456777888888888888888888
Q ss_pred HHHHhCC
Q 038190 303 LDMKSRG 309 (531)
Q Consensus 303 ~~~~~~~ 309 (531)
++..+.+
T Consensus 260 ~~Al~~~ 266 (296)
T PRK11189 260 KLALANN 266 (296)
T ss_pred HHHHHhC
Confidence 8887764
No 77
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.13 E-value=6.2e-07 Score=83.53 Aligned_cols=220 Identities=12% Similarity=-0.007 Sum_probs=138.1
Q ss_pred HHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCcchHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCh
Q 038190 94 LGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKF 173 (531)
Q Consensus 94 i~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 173 (531)
++-+...+++++|.....++...+ +.|...+..-+-++.+.+.+++|+.+.+.-... ..+..-+-.-.-+..+.+..
T Consensus 19 ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~--~~~~~~~fEKAYc~Yrlnk~ 95 (652)
T KOG2376|consen 19 LNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNGAL--LVINSFFFEKAYCEYRLNKL 95 (652)
T ss_pred HHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchh--hhcchhhHHHHHHHHHcccH
Confidence 556778899999999999999876 666778888888899999999998655432211 11111111122334468999
Q ss_pred HHHHHHHHHHHHcCCCCCCCCcHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCC-CHhhHHHHHHHHHhcCChhhhhc
Q 038190 174 TEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYP-DAFVYNSLIRVYCCAVNWEDAKG 252 (531)
Q Consensus 174 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~~~~~~a~~ 252 (531)
++|+..++-. ++. +..+...-...+-+.|++++|.++|+.+.+.+..- +...-..++.+-... .
T Consensus 96 Dealk~~~~~-----~~~---~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l-------~ 160 (652)
T KOG2376|consen 96 DEALKTLKGL-----DRL---DDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAAL-------Q 160 (652)
T ss_pred HHHHHHHhcc-----ccc---chHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhh-------h
Confidence 9999998833 332 55577777888999999999999999998774331 111111122111100 0
Q ss_pred chHHHHHHHHHHHhCCCCCCccccCCHhhHH---HHHHHHhcCCCHHHHHHHHHHHHhCC-------------CCCCH-H
Q 038190 253 NTSAALELHEEFVNGNGELGVICHPDVLSYC---SIINSLCKDVLVDKAKELFLDMKSRG-------------IIPDV-V 315 (531)
Q Consensus 253 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~---~ll~~~~~~~~~~~a~~~~~~~~~~~-------------~~~~~-~ 315 (531)
. ..+.... ..| ..+|. .....+...|++.+|+++++...+.+ +.... .
T Consensus 161 -------~-~~~q~v~------~v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~ 225 (652)
T KOG2376|consen 161 -------V-QLLQSVP------EVP-EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNP 225 (652)
T ss_pred -------H-HHHHhcc------CCC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHH
Confidence 1 0111111 122 22333 33445678999999999999883221 11111 1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 038190 316 VYSSLIDGYCLMGRIDDARKLFVSIESEGCI 346 (531)
Q Consensus 316 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~ 346 (531)
+-..|..++...|+..+|..++..+++....
T Consensus 226 IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~~~ 256 (652)
T KOG2376|consen 226 IRVQLAYVLQLQGQTAEASSIYVDIIKRNPA 256 (652)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHhcCC
Confidence 2234555677899999999999999887543
No 78
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.13 E-value=1.7e-06 Score=81.86 Aligned_cols=308 Identities=11% Similarity=-0.005 Sum_probs=170.3
Q ss_pred hhHHHHHHHHHccCCcchHHHHHHHHHHCCCC-CCh-hhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCCCcHHhHH
Q 038190 123 VSLNILMNCFCKMIGVSDAFVALGRILRKVFS-PDV-VTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYA 200 (531)
Q Consensus 123 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~-~~~-~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 200 (531)
..|..+...+...|+.+.+...+....+.... .+. .........+...|++++|..++++.... .|+ +...+.
T Consensus 7 ~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~--~P~---~~~a~~ 81 (355)
T cd05804 7 LGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDD--YPR---DLLALK 81 (355)
T ss_pred HHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCC---cHHHHH
Confidence 34555556666667777766666665544221 121 11222234456678888888888887765 342 444444
Q ss_pred HHHHHHHh----cCChhHHHHHHHHHhhCCCCCC-HhhHHHHHHHHHhcCChhhhhcchHHHHHHHHHHHhCCCCCCccc
Q 038190 201 SIIDGLCK----DGFVNKVRVLFLDMKGRGIYPD-AFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVIC 275 (531)
Q Consensus 201 ~l~~~~~~----~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~ 275 (531)
. ...+.. .+....+.+.+.. .....|+ ......+...+...|++++|.. .++......
T Consensus 82 ~-~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~-------~~~~al~~~------- 144 (355)
T cd05804 82 L-HLGAFGLGDFSGMRDHVARVLPL--WAPENPDYWYLLGMLAFGLEEAGQYDRAEE-------AARRALELN------- 144 (355)
T ss_pred H-hHHHHHhcccccCchhHHHHHhc--cCcCCCCcHHHHHHHHHHHHHcCCHHHHHH-------HHHHHHhhC-------
Confidence 2 222222 3444444444443 1122233 3333445566777788877777 666655544
Q ss_pred cCCHhhHHHHHHHHhcCCCHHHHHHHHHHHHhCCC-CCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC-HHH
Q 038190 276 HPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGI-IPDV--VVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPD-TSS 351 (531)
Q Consensus 276 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~--~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~-~~~ 351 (531)
+.+...+..+..++...|++++|...+++..+... .++. ..|..+...+...|++++|..++++.......+. ...
T Consensus 145 p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~ 224 (355)
T cd05804 145 PDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALD 224 (355)
T ss_pred CCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHH
Confidence 34456677788888889999999999888776532 1222 3455677888899999999999998764422111 111
Q ss_pred H-H--HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHH
Q 038190 352 Y-N--TLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWEL 428 (531)
Q Consensus 352 ~-~--~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 428 (531)
. + .++.-+...|....+.++ +.+... ..... .+ ............++...|+.+.|..+
T Consensus 225 ~~~~~~~l~~~~~~g~~~~~~~w-~~~~~~---------------~~~~~-~~-~~~~~~~~~~a~~~~~~~~~~~a~~~ 286 (355)
T cd05804 225 LLDAASLLWRLELAGHVDVGDRW-EDLADY---------------AAWHF-PD-HGLAFNDLHAALALAGAGDKDALDKL 286 (355)
T ss_pred HhhHHHHHHHHHhcCCCChHHHH-HHHHHH---------------HHhhc-Cc-ccchHHHHHHHHHHhcCCCHHHHHHH
Confidence 1 1 222223333332222222 111110 00000 00 11222334677888899999999999
Q ss_pred HHHhhhCCCC------C--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 038190 429 FKKLPRYGPE------P--NVVTYTVMICGLCIEGGIEKAYDLLPDMEEK 470 (531)
Q Consensus 429 ~~~~~~~g~~------p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 470 (531)
++.+...... . .....-....++...|++++|.+.+......
T Consensus 287 L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~ 336 (355)
T cd05804 287 LAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDD 336 (355)
T ss_pred HHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 9998763211 0 1112222333456899999999988766554
No 79
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.12 E-value=8.6e-08 Score=78.58 Aligned_cols=199 Identities=13% Similarity=-0.036 Sum_probs=123.9
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCcchHHHHHHHHHHCCCCCChhhHHHHHHHHH
Q 038190 89 SFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLC 168 (531)
Q Consensus 89 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 168 (531)
+...|.-.|.+.|++..|..-+++.++.. +-+..+|..+...|.+.|..+.|.+.|++.++..+. +-.+.|.....+|
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~-~GdVLNNYG~FLC 114 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPN-NGDVLNNYGAFLC 114 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCC-ccchhhhhhHHHH
Confidence 34445566777777777777777777764 334556777777777777777777777777776533 5567777777777
Q ss_pred hcCChHHHHHHHHHHHHcCCCCCCCCcHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChh
Q 038190 169 MQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWE 248 (531)
Q Consensus 169 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~ 248 (531)
..|++++|...|++... .|....-..+|..+.-+..+.|+.+.|...|++..+.... ...+.-.+.....+.|++.
T Consensus 115 ~qg~~~eA~q~F~~Al~---~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~-~~~~~l~~a~~~~~~~~y~ 190 (250)
T COG3063 115 AQGRPEEAMQQFERALA---DPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQ-FPPALLELARLHYKAGDYA 190 (250)
T ss_pred hCCChHHHHHHHHHHHh---CCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcC-CChHHHHHHHHHHhcccch
Confidence 77777777777777776 3333334556777777777777777777777776664322 2334444555555555555
Q ss_pred hhhcchHHHHHHHHHHHhCCCCCCccccCCHhhHHHHHHHHhcCCCHHHHHHHHHHHHh
Q 038190 249 DAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKS 307 (531)
Q Consensus 249 ~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 307 (531)
.|.. .++.....+ .++..+.-..|..-...|+.+.+-++=.++.+
T Consensus 191 ~Ar~-------~~~~~~~~~-------~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r 235 (250)
T COG3063 191 PARL-------YLERYQQRG-------GAQAESLLLGIRIAKRLGDRAAAQRYQAQLQR 235 (250)
T ss_pred HHHH-------HHHHHHhcc-------cccHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 5554 555554444 24455555555555555665555554444443
No 80
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.11 E-value=1.2e-06 Score=76.52 Aligned_cols=185 Identities=13% Similarity=0.085 Sum_probs=124.3
Q ss_pred HHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCcchHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCh
Q 038190 94 LGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKF 173 (531)
Q Consensus 94 i~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 173 (531)
+.-+...+++..|+.+++.-...+-.-...+-..+..++...|++++|...|..+.+.. .++...+-.|.-++.-.|.+
T Consensus 29 Ledfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~Y 107 (557)
T KOG3785|consen 29 LEDFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQY 107 (557)
T ss_pred HHHHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHHH
Confidence 55666788999999999887654422222344445567779999999999999887754 56777777788778888999
Q ss_pred HHHHHHHHHHHHcCCCCCCCCcHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChhhhhcc
Q 038190 174 TEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGN 253 (531)
Q Consensus 174 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~ 253 (531)
.+|..+-..... +.-.-..|....-+.++-++-..+-..+.+. ...--++....... ..
T Consensus 108 ~eA~~~~~ka~k---------~pL~~RLlfhlahklndEk~~~~fh~~LqD~-----~EdqLSLAsvhYmR-------~H 166 (557)
T KOG3785|consen 108 IEAKSIAEKAPK---------TPLCIRLLFHLAHKLNDEKRILTFHSSLQDT-----LEDQLSLASVHYMR-------MH 166 (557)
T ss_pred HHHHHHHhhCCC---------ChHHHHHHHHHHHHhCcHHHHHHHHHHHhhh-----HHHHHhHHHHHHHH-------HH
Confidence 999888766532 3444555666667778877777666666542 11122233333322 34
Q ss_pred hHHHHHHHHHHHhCCCCCCccccCCHhhHHHHH-HHHhcCCCHHHHHHHHHHHHhC
Q 038190 254 TSAALELHEEFVNGNGELGVICHPDVLSYCSII-NSLCKDVLVDKAKELFLDMKSR 308 (531)
Q Consensus 254 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll-~~~~~~~~~~~a~~~~~~~~~~ 308 (531)
|++|++++..+...+ |.....|.-+ -+|.+..-++.+.++++-..+.
T Consensus 167 YQeAIdvYkrvL~dn--------~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q 214 (557)
T KOG3785|consen 167 YQEAIDVYKRVLQDN--------PEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ 214 (557)
T ss_pred HHHHHHHHHHHHhcC--------hhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh
Confidence 566666999988766 5555555544 4566777788888888776665
No 81
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.11 E-value=5.6e-07 Score=82.96 Aligned_cols=358 Identities=14% Similarity=0.049 Sum_probs=206.4
Q ss_pred CcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCcchHHH
Q 038190 64 GEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFV 143 (531)
Q Consensus 64 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~ 143 (531)
..|+++.|...|-..+...|. |-..|..=..+|+..|++++|++=-.+-.+.. +.=+..|.....++.-.|++++|+.
T Consensus 14 s~~d~~~ai~~~t~ai~l~p~-nhvlySnrsaa~a~~~~~~~al~da~k~~~l~-p~w~kgy~r~Gaa~~~lg~~~eA~~ 91 (539)
T KOG0548|consen 14 SSGDFETAIRLFTEAIMLSPT-NHVLYSNRSAAYASLGSYEKALKDATKTRRLN-PDWAKGYSRKGAALFGLGDYEEAIL 91 (539)
T ss_pred ccccHHHHHHHHHHHHccCCC-ccchhcchHHHHHHHhhHHHHHHHHHHHHhcC-CchhhHHHHhHHHHHhcccHHHHHH
Confidence 467999999999999988776 88889888999999999999998888777664 3335689999999999999999999
Q ss_pred HHHHHHHCCCCCChhhHHHHHHHHHhcCC------------------------------------------------hHH
Q 038190 144 ALGRILRKVFSPDVVTLGCLIRGLCMQGK------------------------------------------------FTE 175 (531)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~------------------------------------------------~~~ 175 (531)
.|..-++..+. +...+..+..++..... .+.
T Consensus 92 ay~~GL~~d~~-n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~l~d~r 170 (539)
T KOG0548|consen 92 AYSEGLEKDPS-NKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLYLNDPR 170 (539)
T ss_pred HHHHHhhcCCc-hHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhcccccHH
Confidence 99998887533 55566666665521100 000
Q ss_pred HHHHHHHHHHc--------C-------CCCCC-----CC-------------cHHhHHHHHHHHHhcCChhHHHHHHHHH
Q 038190 176 ASGLFTKFVAF--------D-------CRPNV-----IP-------------NVICYASIIDGLCKDGFVNKVRVLFLDM 222 (531)
Q Consensus 176 a~~~~~~~~~~--------~-------~~~~~-----~~-------------~~~~~~~l~~~~~~~~~~~~a~~~~~~m 222 (531)
.....-.+... + ..|.. .| -..-...+.++.-+..+++.|.+-+...
T Consensus 171 ~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q~y~~a 250 (539)
T KOG0548|consen 171 LMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQHYAKA 250 (539)
T ss_pred HHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 00000000000 0 00000 00 0112334455555556666666666666
Q ss_pred hhCCCCCCHhhHHHHHHHHHhcCChhhhhcchHHHHHHHHHHHhCCCCCCccccCCHhhHHHHHHHHhcCCCHHHHHHHH
Q 038190 223 KGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELF 302 (531)
Q Consensus 223 ~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~ 302 (531)
.+.. -+..-++....+|...|.+.......+.+++.-.+....- ..=...+..+..+|.+.++++.|...|
T Consensus 251 ~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~-------klIak~~~r~g~a~~k~~~~~~ai~~~ 321 (539)
T KOG0548|consen 251 LELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADY-------KLIAKALARLGNAYTKREDYEGAIKYY 321 (539)
T ss_pred HhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHH-------HHHHHHHHHhhhhhhhHHhHHHHHHHH
Confidence 5543 2444455556667777777777776666555444433321 111122233444566667777777777
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 038190 303 LDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRP 382 (531)
Q Consensus 303 ~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~ 382 (531)
.+.......|+. ..+....+++.+..+...-.+... ..-...-...+.+.|++..|+..|.+++... |
T Consensus 322 ~kaLte~Rt~~~---------ls~lk~~Ek~~k~~e~~a~~~pe~-A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~--P 389 (539)
T KOG0548|consen 322 QKALTEHRTPDL---------LSKLKEAEKALKEAERKAYINPEK-AEEEREKGNEAFKKGDYPEAVKHYTEAIKRD--P 389 (539)
T ss_pred HHHhhhhcCHHH---------HHHHHHHHHHHHHHHHHHhhChhH-HHHHHHHHHHHHhccCHHHHHHHHHHHHhcC--C
Confidence 775554333222 122333444444444433322221 1111122455667777777777777776643 4
Q ss_pred CcccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHhhhCCCCCc-HHHHHHHHHHHHHcCCHHHHH
Q 038190 383 DNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPN-VVTYTVMICGLCIEGGIEKAY 461 (531)
Q Consensus 383 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~ 461 (531)
+ |...|....-+|.+.|.+..|+.=.+...+. .|+ ...|..=..++....++++|+
T Consensus 390 ~---------------------Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL--~p~~~kgy~RKg~al~~mk~ydkAl 446 (539)
T KOG0548|consen 390 E---------------------DARLYSNRAACYLKLGEYPEALKDAKKCIEL--DPNFIKAYLRKGAALRAMKEYDKAL 446 (539)
T ss_pred c---------------------hhHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--CchHHHHHHHHHHHHHHHHHHHHHH
Confidence 3 7788888888888888888888877777764 333 222322233333344444444
Q ss_pred HHHHHHH
Q 038190 462 DLLPDME 468 (531)
Q Consensus 462 ~~~~~~~ 468 (531)
+.|++..
T Consensus 447 eay~eal 453 (539)
T KOG0548|consen 447 EAYQEAL 453 (539)
T ss_pred HHHHHHH
Confidence 4444433
No 82
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.10 E-value=8.7e-07 Score=75.45 Aligned_cols=379 Identities=12% Similarity=0.092 Sum_probs=225.8
Q ss_pred hhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCcchHHHHHHHHHHCCCCCChhhHHH-HHH
Q 038190 87 MPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGC-LIR 165 (531)
Q Consensus 87 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~-li~ 165 (531)
.--+.+++..+.+..++..|++++....++. +.+......|..+|-...++..|-..|+++-.. .|...-|.. -..
T Consensus 10 EGeftaviy~lI~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQ 86 (459)
T KOG4340|consen 10 EGEFTAVVYRLIRDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQ 86 (459)
T ss_pred CCchHHHHHHHHHHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHH
Confidence 3347788888888899999999998888775 336677888888888999999999999998776 344444442 345
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCCCCCcHHhHHHHHH--HHHhcCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHh
Q 038190 166 GLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIID--GLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCC 243 (531)
Q Consensus 166 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~ 243 (531)
.+-+.+.+..|+++...|... + +...-..-+. ..-..+++..+..++++....| +..+.+.......+
T Consensus 87 SLY~A~i~ADALrV~~~~~D~---~----~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllyk 156 (459)
T KOG4340|consen 87 SLYKACIYADALRVAFLLLDN---P----ALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYK 156 (459)
T ss_pred HHHHhcccHHHHHHHHHhcCC---H----HHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeec
Confidence 667788899999998887641 1 1111111122 2335678888888888877432 44444444444567
Q ss_pred cCChhhhhcchHHHHHHHHHHHhCCCCCCccccCCHhhHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCC-----------
Q 038190 244 AVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIP----------- 312 (531)
Q Consensus 244 ~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~----------- 312 (531)
.|+++.|.+ -|....+-++ .. ....|+..+ +..+.++++.|+++..++.+.|++-
T Consensus 157 egqyEaAvq-------kFqaAlqvsG-----yq-pllAYniAL-aHy~~~qyasALk~iSEIieRG~r~HPElgIGm~te 222 (459)
T KOG4340|consen 157 EGQYEAAVQ-------KFQAALQVSG-----YQ-PLLAYNLAL-AHYSSRQYASALKHISEIIERGIRQHPELGIGMTTE 222 (459)
T ss_pred cccHHHHHH-------HHHHHHhhcC-----CC-chhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceec
Confidence 777777777 5555544442 22 345666544 4456788899999999888877542
Q ss_pred --CHH---------------HHHHHHHHHHhcCCHHHHHHHHHHHHhc-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 038190 313 --DVV---------------VYSSLIDGYCLMGRIDDARKLFVSIESE-GCIPDTSSYNTLINSYSKIEKVEEALSLYGE 374 (531)
Q Consensus 313 --~~~---------------~~~~ll~~~~~~g~~~~a~~~~~~~~~~-g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~ 374 (531)
|+. .+|.-...+.+.|+++.|.+.+-.|.-+ ....|++|...+.-.-. .+++.+..+-++-
T Consensus 223 giDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n~-~~~p~~g~~KLqF 301 (459)
T KOG4340|consen 223 GIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMNM-DARPTEGFEKLQF 301 (459)
T ss_pred cCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhcc-cCCccccHHHHHH
Confidence 111 1122222344566677776666665422 12234444433322111 2333333333333
Q ss_pred HHhCCCCCCcccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHhhhCCCC-CcHHHHHHHHHHHH-
Q 038190 375 MISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPE-PNVVTYTVMICGLC- 452 (531)
Q Consensus 375 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~-p~~~~~~~l~~~~~- 452 (531)
+.+.+. -...||..++-.||+..-++.|-+++-+-...-.. .+...|+ +++++.
T Consensus 302 LL~~nP-----------------------fP~ETFANlLllyCKNeyf~lAADvLAEn~~lTyk~L~~Yly~-LLdaLIt 357 (459)
T KOG4340|consen 302 LLQQNP-----------------------FPPETFANLLLLYCKNEYFDLAADVLAENAHLTYKFLTPYLYD-LLDALIT 357 (459)
T ss_pred HHhcCC-----------------------CChHHHHHHHHHHhhhHHHhHHHHHHhhCcchhHHHhhHHHHH-HHHHHHh
Confidence 333221 24679999999999999999999888664432111 1333444 344444
Q ss_pred HcCCHHHHHHHHHHHHHHH--------------------hhHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChhHH
Q 038190 453 IEGGIEKAYDLLPDMEEKI--------------------RECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHEC 512 (531)
Q Consensus 453 ~~g~~~~A~~~~~~~~~~i--------------------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 512 (531)
..-..++|.+-++.+.+.. .....++.-+++.++.- ..+.....+.|++..++.-+
T Consensus 358 ~qT~pEea~KKL~~La~~l~~kLRklAi~vQe~r~~~dd~a~R~ai~~Yd~~LE~Y----LPVlMa~AkiyW~~~Dy~~v 433 (459)
T KOG4340|consen 358 CQTAPEEAFKKLDGLAGMLTEKLRKLAIQVQEARHNRDDEAIRKAVNEYDETLEKY----LPVLMAQAKIYWNLEDYPMV 433 (459)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHH----HHHHHHHHHhhccccccHHH
Confidence 3456777777666655541 11122222233322221 12345566778888899999
Q ss_pred HhhHHHhhh
Q 038190 513 MNLLPSFLS 521 (531)
Q Consensus 513 ~~~~~~~~~ 521 (531)
.++|..-..
T Consensus 434 Ek~Fr~Sve 442 (459)
T KOG4340|consen 434 EKIFRKSVE 442 (459)
T ss_pred HHHHHHHHh
Confidence 888876443
No 83
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.08 E-value=2.9e-07 Score=83.71 Aligned_cols=221 Identities=13% Similarity=0.017 Sum_probs=150.0
Q ss_pred ccCCHHHHHHHHHHHHhCC-CCCC--HhhHHHHHHHHHccCCcchHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHH
Q 038190 99 GKKYYVNFICLSERLNTIG-LLPD--FVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTE 175 (531)
Q Consensus 99 ~~~~~~~a~~~~~~m~~~g-~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 175 (531)
..+..+.++.-+.+++... ..|+ ...|..+...+...|+++.|...|++.++..+. +...|+.+...+...|++++
T Consensus 38 ~~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~~~~~g~~~~ 116 (296)
T PRK11189 38 PTLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPD-MADAYNYLGIYLTQAGNFDA 116 (296)
T ss_pred CchHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHCCCHHH
Confidence 3456677888888887543 1222 345777888889999999999999999988643 67899999999999999999
Q ss_pred HHHHHHHHHHcCCCCCCCCcHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChhhhhcchH
Q 038190 176 ASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTS 255 (531)
Q Consensus 176 a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~ 255 (531)
|...|++..+. .|+ +..+|..+..++...|++++|.+.|+...+.. |+..........+...++.++|..
T Consensus 117 A~~~~~~Al~l--~P~---~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~--P~~~~~~~~~~l~~~~~~~~~A~~--- 186 (296)
T PRK11189 117 AYEAFDSVLEL--DPT---YNYAYLNRGIALYYGGRYELAQDDLLAFYQDD--PNDPYRALWLYLAESKLDPKQAKE--- 186 (296)
T ss_pred HHHHHHHHHHh--CCC---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHccCCHHHHHH---
Confidence 99999999876 453 67788889999999999999999999988753 333222222222334455556655
Q ss_pred HHHHHHHHHHhCCCCCCccccCCHhhHHHHHHHHhcCCCHHHHHHHHHHHHhC---CC--C-CCHHHHHHHHHHHHhcCC
Q 038190 256 AALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSR---GI--I-PDVVVYSSLIDGYCLMGR 329 (531)
Q Consensus 256 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---~~--~-~~~~~~~~ll~~~~~~g~ 329 (531)
.+....... .++...+ .+.. ...|+...+ ..++.+.+. .+ . .....|..+...+.+.|+
T Consensus 187 ----~l~~~~~~~-------~~~~~~~-~~~~--~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~ 251 (296)
T PRK11189 187 ----NLKQRYEKL-------DKEQWGW-NIVE--FYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGD 251 (296)
T ss_pred ----HHHHHHhhC-------CccccHH-HHHH--HHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCC
Confidence 765544322 2222222 2222 234554443 344444422 11 1 123568888888999999
Q ss_pred HHHHHHHHHHHHhcCC
Q 038190 330 IDDARKLFVSIESEGC 345 (531)
Q Consensus 330 ~~~a~~~~~~~~~~g~ 345 (531)
+++|...|++..+.++
T Consensus 252 ~~~A~~~~~~Al~~~~ 267 (296)
T PRK11189 252 LDEAAALFKLALANNV 267 (296)
T ss_pred HHHHHHHHHHHHHhCC
Confidence 9999999999887653
No 84
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=99.07 E-value=9.7e-07 Score=85.29 Aligned_cols=178 Identities=9% Similarity=-0.047 Sum_probs=113.2
Q ss_pred CcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhC-C-------CCCCHhhHHHHHHHHHcc
Q 038190 64 GEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTI-G-------LLPDFVSLNILMNCFCKM 135 (531)
Q Consensus 64 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-g-------~~~~~~~~~~li~~~~~~ 135 (531)
..|+.+.|.+-..-+. +...|..+.+.|.+.++++-|.-.+..|... | .+-+..+=..+.......
T Consensus 740 tiG~MD~AfksI~~Ik------S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~e~eakvAvLAieL 813 (1416)
T KOG3617|consen 740 TIGSMDAAFKSIQFIK------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGEEDEAKVAVLAIEL 813 (1416)
T ss_pred EeccHHHHHHHHHHHh------hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCcchhhHHHHHHHHH
Confidence 4568888887776552 5678999999999999999888777776422 1 111113333334444577
Q ss_pred CCcchHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCCCcHHhHHHHHHHHHhcCChhHH
Q 038190 136 IGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKV 215 (531)
Q Consensus 136 g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 215 (531)
|.+++|+.+|.+-++. ..|=..|...|.+++|.++-+.--+.. -..||......+-..++.+.|
T Consensus 814 gMlEeA~~lYr~ckR~---------DLlNKlyQs~g~w~eA~eiAE~~DRiH-------Lr~Tyy~yA~~Lear~Di~~A 877 (1416)
T KOG3617|consen 814 GMLEEALILYRQCKRY---------DLLNKLYQSQGMWSEAFEIAETKDRIH-------LRNTYYNYAKYLEARRDIEAA 877 (1416)
T ss_pred hhHHHHHHHHHHHHHH---------HHHHHHHHhcccHHHHHHHHhhcccee-------hhhhHHHHHHHHHhhccHHHH
Confidence 8999999999887653 334456777899999988865432211 234666677777777888888
Q ss_pred HHHHHHHhhCC-------------------CCCCHhhHHHHHHHHHhcCChhhhhcchHHHHHHHHH
Q 038190 216 RVLFLDMKGRG-------------------IYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEE 263 (531)
Q Consensus 216 ~~~~~~m~~~g-------------------~~p~~~~~~~li~~~~~~~~~~~a~~~~~~a~~~~~~ 263 (531)
++.|++..... -.-|...|.....-+-..|+.+.|+..|..|.+.|..
T Consensus 878 leyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D~fs~ 944 (1416)
T KOG3617|consen 878 LEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKDYFSM 944 (1416)
T ss_pred HHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhhhhhh
Confidence 87776532110 0113344444444455667777777755555555443
No 85
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.05 E-value=7e-07 Score=95.66 Aligned_cols=349 Identities=10% Similarity=-0.056 Sum_probs=214.4
Q ss_pred HHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCcchHHHHHHHHHHCCCC------CC--hhhHHHHHHHHH
Q 038190 97 LAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFS------PD--VVTLGCLIRGLC 168 (531)
Q Consensus 97 ~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~------~~--~~~~~~li~~~~ 168 (531)
+...|++..+...++.+.......+..........+...|+++++..++......-.. +. ......+...+.
T Consensus 384 l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 463 (903)
T PRK04841 384 LFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAI 463 (903)
T ss_pred HHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHH
Confidence 3445666666565555421111122333334445556778999999998877543111 11 112223345566
Q ss_pred hcCChHHHHHHHHHHHHcCCCCCCCCcHHhHHHHHHHHHhcCChhHHHHHHHHHhhC----CC-CCCHhhHHHHHHHHHh
Q 038190 169 MQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGR----GI-YPDAFVYNSLIRVYCC 243 (531)
Q Consensus 169 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~----g~-~p~~~~~~~li~~~~~ 243 (531)
..|++++|...+++............-..+.+.+...+...|++++|...+.+.... |- .....++..+...+..
T Consensus 464 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~ 543 (903)
T PRK04841 464 NDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFA 543 (903)
T ss_pred hCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHH
Confidence 789999999999988763111100001234566777788899999999999887642 11 1112344556677888
Q ss_pred cCChhhhhcchHHHHHHHHHHHhCCCCCCccccCCHhhHHHHHHHHhcCCCHHHHHHHHHHHHhCC--CCC--CHHHHHH
Q 038190 244 AVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRG--IIP--DVVVYSS 319 (531)
Q Consensus 244 ~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~~~--~~~~~~~ 319 (531)
.|+++.|...+++++.+.+...... .......+..+...+...|++++|...+++..... ..+ ....+..
T Consensus 544 ~G~~~~A~~~~~~al~~~~~~~~~~------~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 617 (903)
T PRK04841 544 QGFLQAAYETQEKAFQLIEEQHLEQ------LPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAM 617 (903)
T ss_pred CCCHHHHHHHHHHHHHHHHHhcccc------ccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHH
Confidence 9999999998888877765532111 11123345556667778899999999988875531 112 2334445
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCC-CHHHH-----HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHH
Q 038190 320 LIDGYCLMGRIDDARKLFVSIESEGCIP-DTSSY-----NTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAEL 393 (531)
Q Consensus 320 ll~~~~~~g~~~~a~~~~~~~~~~g~~p-~~~~~-----~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~ 393 (531)
+...+...|+++.|...++......... ....+ ...+..+...|+.+.|..++...........
T Consensus 618 la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~---------- 687 (903)
T PRK04841 618 LAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANN---------- 687 (903)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccc----------
Confidence 6667888999999999998875431111 11111 1122444567888888888766433111000
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHhhhC----CCCCc-HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 038190 394 FRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRY----GPEPN-VVTYTVMICGLCIEGGIEKAYDLLPDME 468 (531)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 468 (531)
......+..+..++...|++++|..++++.... |..++ ..++..+..++.+.|+.++|.+.+.+..
T Consensus 688 ---------~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al 758 (903)
T PRK04841 688 ---------HFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEAL 758 (903)
T ss_pred ---------hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 001122456778889999999999999988752 32222 3456667778889999999999999887
Q ss_pred HH
Q 038190 469 EK 470 (531)
Q Consensus 469 ~~ 470 (531)
+.
T Consensus 759 ~l 760 (903)
T PRK04841 759 KL 760 (903)
T ss_pred HH
Confidence 76
No 86
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.04 E-value=2.8e-06 Score=91.08 Aligned_cols=349 Identities=11% Similarity=-0.024 Sum_probs=207.3
Q ss_pred HHccCCcchHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC--CCCc--HHhHHHHHHHHH
Q 038190 132 FCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPN--VIPN--VICYASIIDGLC 207 (531)
Q Consensus 132 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~--~~~~~~l~~~~~ 207 (531)
....|+++.+..+++.+.......+..........+...|+++++..++......-...+ ..+. ......+...+.
T Consensus 384 l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 463 (903)
T PRK04841 384 LFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAI 463 (903)
T ss_pred HHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHH
Confidence 334566666666665542211112233334455666788999999999988754311110 0011 122233445567
Q ss_pred hcCChhHHHHHHHHHhhCCCCCCH----hhHHHHHHHHHhcCChhhhhcchHHHHHHHHHHHhCCCCCCccccCCHhhHH
Q 038190 208 KDGFVNKVRVLFLDMKGRGIYPDA----FVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYC 283 (531)
Q Consensus 208 ~~~~~~~a~~~~~~m~~~g~~p~~----~~~~~li~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (531)
..|++++|...+++....-...+. ...+.+...+...|+++.|...+.+++........ ......++.
T Consensus 464 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~--------~~~~~~~~~ 535 (903)
T PRK04841 464 NDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDV--------YHYALWSLL 535 (903)
T ss_pred hCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcc--------hHHHHHHHH
Confidence 889999999999987653111121 23455566677889999999977777766554211 112234556
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHhC----CCC--C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc----CCCCCHHHH
Q 038190 284 SIINSLCKDVLVDKAKELFLDMKSR----GII--P-DVVVYSSLIDGYCLMGRIDDARKLFVSIESE----GCIPDTSSY 352 (531)
Q Consensus 284 ~ll~~~~~~~~~~~a~~~~~~~~~~----~~~--~-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~----g~~p~~~~~ 352 (531)
.+...+...|+++.|...+++.... +.. + ....+..+...+...|++++|...+.+.... +.......+
T Consensus 536 ~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~ 615 (903)
T PRK04841 536 QQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCL 615 (903)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHH
Confidence 6777888999999999998876552 211 1 2233445556677789999999999887543 111123344
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHhCCCCCCH--HHHHHHHHHHHcCCChHHHHHHHH
Q 038190 353 NTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDL--TVFNCLVDGLCKSWRLRSAWELFK 430 (531)
Q Consensus 353 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~ 430 (531)
..+...+...|+++.|...++......... +..... ......+..+...|+.+.|..++.
T Consensus 616 ~~la~~~~~~G~~~~A~~~l~~a~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~ 677 (903)
T PRK04841 616 AMLAKISLARGDLDNARRYLNRLENLLGNG------------------RYHSDWIANADKVRLIYWQMTGDKEAAANWLR 677 (903)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHhcc------------------cccHhHhhHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 445667788999999999888875421000 000000 011112344556899999999987
Q ss_pred HhhhCCCCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhcc
Q 038190 431 KLPRYGPEPN---VVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECLKAIELLHKMAKRYVKPD-EITVSILEELLNKD 506 (531)
Q Consensus 431 ~~~~~g~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~i~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~ 506 (531)
.......... ...+..+..++...|++++|...+++.... . ...|...+ ..++..+..++.+.
T Consensus 678 ~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~----------~---~~~g~~~~~a~~~~~la~a~~~~ 744 (903)
T PRK04841 678 QAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNEN----------A---RSLRLMSDLNRNLILLNQLYWQQ 744 (903)
T ss_pred hcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH----------H---HHhCchHHHHHHHHHHHHHHHHc
Confidence 7664211111 111345667788899999998888765432 1 12233222 24556677777788
Q ss_pred CChhHHHhhHHHh
Q 038190 507 ENCHECMNLLPSF 519 (531)
Q Consensus 507 g~~~~a~~~~~~~ 519 (531)
|+.++|.+.+.+.
T Consensus 745 G~~~~A~~~L~~A 757 (903)
T PRK04841 745 GRKSEAQRVLLEA 757 (903)
T ss_pred CCHHHHHHHHHHH
Confidence 8887777776654
No 87
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.04 E-value=6.1e-06 Score=76.37 Aligned_cols=388 Identities=14% Similarity=0.087 Sum_probs=247.1
Q ss_pred HHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCcchHHHHHHHHHHCCCCCC-hhhHHHHHHHHHhcCCh
Q 038190 95 GALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPD-VVTLGCLIRGLCMQGKF 173 (531)
Q Consensus 95 ~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~ 173 (531)
.+....|+++.|+.+|.+.+... ++|...|..-..+|+..|++++|++=-.+-.+. .|+ ...|.-...++.-.|++
T Consensus 10 naa~s~~d~~~ai~~~t~ai~l~-p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l--~p~w~kgy~r~Gaa~~~lg~~ 86 (539)
T KOG0548|consen 10 NAAFSSGDFETAIRLFTEAIMLS-PTNHVLYSNRSAAYASLGSYEKALKDATKTRRL--NPDWAKGYSRKGAALFGLGDY 86 (539)
T ss_pred HhhcccccHHHHHHHHHHHHccC-CCccchhcchHHHHHHHhhHHHHHHHHHHHHhc--CCchhhHHHHhHHHHHhcccH
Confidence 45667899999999999998876 568889999999999999999998877776665 344 35888889999999999
Q ss_pred HHHHHHHHHHHHcCCCCCCCCcHHhHHHHHHHHHhcCChhHH---HHHHHHHhhC---CCCCCHhhHHHHHHHHHhc---
Q 038190 174 TEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKV---RVLFLDMKGR---GIYPDAFVYNSLIRVYCCA--- 244 (531)
Q Consensus 174 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a---~~~~~~m~~~---g~~p~~~~~~~li~~~~~~--- 244 (531)
++|+..|.+=.+. .|+ +...++.+..++.......+. -.++..+... ........|..++..+-+.
T Consensus 87 ~eA~~ay~~GL~~--d~~---n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~ 161 (539)
T KOG0548|consen 87 EEAILAYSEGLEK--DPS---NKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTS 161 (539)
T ss_pred HHHHHHHHHHhhc--CCc---hHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHh
Confidence 9999999998876 443 677788887777211000000 0011111100 0000111222222222111
Q ss_pred -------CChhhhhcchHHHHHHHHH-----HHhCCCC-CCccccC------------C----------HhhHHHHHHHH
Q 038190 245 -------VNWEDAKGNTSAALELHEE-----FVNGNGE-LGVICHP------------D----------VLSYCSIINSL 289 (531)
Q Consensus 245 -------~~~~~a~~~~~~a~~~~~~-----~~~~~~~-~~~~~~~------------~----------~~~~~~ll~~~ 289 (531)
.+...+.. .+.. +...+.. ......| | ..-...+.++.
T Consensus 162 l~~~l~d~r~m~a~~-------~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaa 234 (539)
T KOG0548|consen 162 LKLYLNDPRLMKADG-------QLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAA 234 (539)
T ss_pred hhcccccHHHHHHHH-------HHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHH
Confidence 00111111 0000 0000000 0000001 0 12345677788
Q ss_pred hcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHH-------HHHHHHHHhc
Q 038190 290 CKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSY-------NTLINSYSKI 362 (531)
Q Consensus 290 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~-------~~li~~~~~~ 362 (531)
.+..+++.|.+-+....+.. -+..-++....+|...|.+..+....+...+.|.. ...-| ..+..+|.+.
T Consensus 235 ykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~g~a~~k~ 311 (539)
T KOG0548|consen 235 YKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARLGNAYTKR 311 (539)
T ss_pred HHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHhhhhhhhH
Confidence 88889999999999888774 35566677778899999988888887777666543 22222 2344477778
Q ss_pred CCHHHHHHHHHHHHhCCCCCC----cccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHhhhCCCC
Q 038190 363 EKVEEALSLYGEMISMGVRPD----NSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPE 438 (531)
Q Consensus 363 ~~~~~a~~~~~~~~~~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~ 438 (531)
++++.++..|.+....-..|+ ....++++.......-.+... ..-...-...+.+.|++..|+..|.+++... +
T Consensus 312 ~~~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~-A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~-P 389 (539)
T KOG0548|consen 312 EDYEGAIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEK-AEEEREKGNEAFKKGDYPEAVKHYTEAIKRD-P 389 (539)
T ss_pred HhHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhH-HHHHHHHHHHHHhccCHHHHHHHHHHHHhcC-C
Confidence 899999999999877666665 333444444444443333222 1122233778889999999999999999864 4
Q ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-----------------HhhHHHHHHHHHHHHHcCCCCCH-HHHHHHH
Q 038190 439 PNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK-----------------IRECLKAIELLHKMAKRYVKPDE-ITVSILE 500 (531)
Q Consensus 439 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----------------i~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~ 500 (531)
-|...|....-+|.+.|.+..|++=.+..++. +.++++|+..|.+.++.. |+. .....+.
T Consensus 390 ~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~d--p~~~e~~~~~~ 467 (539)
T KOG0548|consen 390 EDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELD--PSNAEAIDGYR 467 (539)
T ss_pred chhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--chhHHHHHHHH
Confidence 47888999999999999999998855554443 589999999999998765 443 3444444
Q ss_pred HHHh
Q 038190 501 ELLN 504 (531)
Q Consensus 501 ~~~~ 504 (531)
+++.
T Consensus 468 rc~~ 471 (539)
T KOG0548|consen 468 RCVE 471 (539)
T ss_pred HHHH
Confidence 4443
No 88
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.04 E-value=3.7e-07 Score=74.94 Aligned_cols=206 Identities=13% Similarity=-0.011 Sum_probs=152.9
Q ss_pred hHHHHHHHHHccCCcchHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCCCcHHhHHHHH
Q 038190 124 SLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASII 203 (531)
Q Consensus 124 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~ 203 (531)
+..-|.-.|.+.|+...|..-++++++..+. +..+|..+...|.+.|+.+.|.+-|++.... .|+ +-.+.|...
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~DPs-~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl--~p~---~GdVLNNYG 110 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHDPS-YYLAHLVRAHYYQKLGENDLADESYRKALSL--APN---NGDVLNNYG 110 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCChhhHHHHHHHHHhc--CCC---ccchhhhhh
Confidence 4556667788889999999999999888543 5678888888899999999999999988876 443 667888888
Q ss_pred HHHHhcCChhHHHHHHHHHhhCCC-CCCHhhHHHHHHHHHhcCChhhhhcchHHHHHHHHHHHhCCCCCCccccCCHhhH
Q 038190 204 DGLCKDGFVNKVRVLFLDMKGRGI-YPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSY 282 (531)
Q Consensus 204 ~~~~~~~~~~~a~~~~~~m~~~g~-~p~~~~~~~li~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (531)
..+|..|.+++|...|++....-. .--..+|..+.-+..+.|+.+.|.. .|++....+ +-...+.
T Consensus 111 ~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~-------~l~raL~~d-------p~~~~~~ 176 (250)
T COG3063 111 AFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEE-------YLKRALELD-------PQFPPAL 176 (250)
T ss_pred HHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHH-------HHHHHHHhC-------cCCChHH
Confidence 888999999999999988876521 2234567777777778888888888 555554443 2234456
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHH
Q 038190 283 CSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSY 352 (531)
Q Consensus 283 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~ 352 (531)
..+.....+.|++-.|..+++.....+. ++.......|..--..|+.+.+.+.=..+.+. .|...-|
T Consensus 177 l~~a~~~~~~~~y~~Ar~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~--fP~s~e~ 243 (250)
T COG3063 177 LELARLHYKAGDYAPARLYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQRL--FPYSEEY 243 (250)
T ss_pred HHHHHHHHhcccchHHHHHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCcHHH
Confidence 6777788888888888888888776654 77777777778777888888777766666554 3444433
No 89
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.01 E-value=3.2e-05 Score=74.84 Aligned_cols=389 Identities=13% Similarity=0.014 Sum_probs=242.5
Q ss_pred CCCCCHhhHHHHHHHHHccCCcchHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCCCcH
Q 038190 117 GLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNV 196 (531)
Q Consensus 117 g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 196 (531)
.+.-|...|..+.-+....|+++.+.+.|++....-+. ....|..+...|...|.-..|..+++.-......| +|.
T Consensus 318 ~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~-~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~p---s~~ 393 (799)
T KOG4162|consen 318 KFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFG-EHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQP---SDI 393 (799)
T ss_pred hhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhh-hHHHHHHHHHHHHHhccchHHHHHHHhhcccccCC---Ccc
Confidence 35567888888888888899999999999988765433 66788888888999999888999888776543223 244
Q ss_pred HhHHHHHHHHHh-cCChhHHHHHHHHHhhC--CC--CCCHhhHHHHHHHHH----hcCChhhhhcchHHHHHHHHHHHhC
Q 038190 197 ICYASIIDGLCK-DGFVNKVRVLFLDMKGR--GI--YPDAFVYNSLIRVYC----CAVNWEDAKGNTSAALELHEEFVNG 267 (531)
Q Consensus 197 ~~~~~l~~~~~~-~~~~~~a~~~~~~m~~~--g~--~p~~~~~~~li~~~~----~~~~~~~a~~~~~~a~~~~~~~~~~ 267 (531)
..+-..-..|.+ .+.+++++++-.+.... +. ......|..+.-+|. ....+.+-.....++++.+++..+.
T Consensus 394 s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~ 473 (799)
T KOG4162|consen 394 SVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQF 473 (799)
T ss_pred hHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhc
Confidence 444444444443 46677777766665541 11 112223333333332 2334444445667788888888777
Q ss_pred CCCCCccccCCHhhHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-CCC
Q 038190 268 NGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESE-GCI 346 (531)
Q Consensus 268 ~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-g~~ 346 (531)
++ ..|++..|- .--|+..++.+.|.+..++..+.+-..+...|..|.-.+...+++.+|+.+.+...+. |.
T Consensus 474 d~-----~dp~~if~l--alq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~- 545 (799)
T KOG4162|consen 474 DP-----TDPLVIFYL--ALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGD- 545 (799)
T ss_pred CC-----CCchHHHHH--HHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhh-
Confidence 63 345444443 3346677889999999999999876778999999999999999999999999876543 21
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh---------------------CCCCCCccc-------HHHHHHHHH-HH
Q 038190 347 PDTSSYNTLINSYSKIEKVEEALSLYGEMIS---------------------MGVRPDNSC-------ILEAAELFR-TL 397 (531)
Q Consensus 347 p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~---------------------~~~~~~~~~-------~~~a~~~~~-~~ 397 (531)
|......-+..-...++.++++.....+.. .|+....+. ...+..+.. +.
T Consensus 546 -N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~ 624 (799)
T KOG4162|consen 546 -NHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQL 624 (799)
T ss_pred -hhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhh
Confidence 111100111111123444444333222211 111111111 111111111 11
Q ss_pred HhCC---------CC--CC------HHHHHHHHHHHHcCCChHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHcCCHHHH
Q 038190 398 HNTK---------FE--LD------LTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKA 460 (531)
Q Consensus 398 ~~~~---------~~--~~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A 460 (531)
...+ .. |+ ...|......+.+.+..++|.-.+.+.... ..-.+..|......+...|++.+|
T Consensus 625 ~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~-~~l~~~~~~~~G~~~~~~~~~~EA 703 (799)
T KOG4162|consen 625 KSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKI-DPLSASVYYLRGLLLEVKGQLEEA 703 (799)
T ss_pred hhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhc-chhhHHHHHHhhHHHHHHHhhHHH
Confidence 1111 11 11 234556677778888888888777777663 233566677777778888888888
Q ss_pred HHHHHHHHHH-----------------HhhH--HHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChhHHHhhHHHhh
Q 038190 461 YDLLPDMEEK-----------------IREC--LKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLLPSFL 520 (531)
Q Consensus 461 ~~~~~~~~~~-----------------i~~~--~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 520 (531)
.+.|...... .|+. .+...++..+.+.+. .+...|..++.++.+.|+.++|.+-++...
T Consensus 704 ~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp-~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~ 781 (799)
T KOG4162|consen 704 KEAFLVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDP-LNHEAWYYLGEVFKKLGDSKQAAECFQAAL 781 (799)
T ss_pred HHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHccchHHHHHHHHHHH
Confidence 8888766554 1433 344448888887763 477899999999999999999988887643
No 90
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.01 E-value=5.9e-06 Score=71.97 Aligned_cols=202 Identities=11% Similarity=0.013 Sum_probs=126.2
Q ss_pred ChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCH-hhHHHHHHHHHccCCcchHHHHHHHHHHCCCCCChhh-HHHH
Q 038190 86 FMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDF-VSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVT-LGCL 163 (531)
Q Consensus 86 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~-~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~-~~~l 163 (531)
++.-.-.+...+...|++..|+.-|...++-. |+. .++..-...|...|+-..|+.-+..+++. .||-.. ..--
T Consensus 37 dvekhlElGk~lla~~Q~sDALt~yHaAve~d--p~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQR 112 (504)
T KOG0624|consen 37 DVEKHLELGKELLARGQLSDALTHYHAAVEGD--PNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQR 112 (504)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCC--chhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHh
Confidence 44445566777888899999999999888642 332 23444456788889999999999998876 455432 2233
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCCCCCcHHhHH------------HHHHHHHhcCChhHHHHHHHHHhhCCCCCCH
Q 038190 164 IRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYA------------SIIDGLCKDGFVNKVRVLFLDMKGRGIYPDA 231 (531)
Q Consensus 164 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~------------~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~ 231 (531)
...+.+.|.+++|..-|+.++......+. ....+. ..+..+...|+...|+.....+.+--+- |.
T Consensus 113 g~vllK~Gele~A~~DF~~vl~~~~s~~~--~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~W-da 189 (504)
T KOG0624|consen 113 GVVLLKQGELEQAEADFDQVLQHEPSNGL--VLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPW-DA 189 (504)
T ss_pred chhhhhcccHHHHHHHHHHHHhcCCCcch--hHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcc-hh
Confidence 45688899999999999999876332211 111111 2233444567777777777777664222 55
Q ss_pred hhHHHHHHHHHhcCChhhhhcchHHHHHHHHHHHhCCCCCCccccCCHhhHHHHHHHHhcCCCHHHHHHHHHHHHhC
Q 038190 232 FVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSR 308 (531)
Q Consensus 232 ~~~~~li~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 308 (531)
..|..-..+|...|++..|+. -++...+.. ..+..++--+-..+...|+.+.++...++.++.
T Consensus 190 ~l~~~Rakc~i~~~e~k~AI~-------Dlk~askLs-------~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKl 252 (504)
T KOG0624|consen 190 SLRQARAKCYIAEGEPKKAIH-------DLKQASKLS-------QDNTEGHYKISQLLYTVGDAENSLKEIRECLKL 252 (504)
T ss_pred HHHHHHHHHHHhcCcHHHHHH-------HHHHHHhcc-------ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHcc
Confidence 555566666777776666666 333322222 234445555566666677777776666666654
No 91
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.00 E-value=3.8e-06 Score=80.97 Aligned_cols=265 Identities=16% Similarity=0.071 Sum_probs=161.2
Q ss_pred hHHHHHHHHHHHHcCCCCCCCCcHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChhhhhc
Q 038190 173 FTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKG 252 (531)
Q Consensus 173 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~ 252 (531)
..++++.+++..+.+... |++..| +.--|+..++.+.|.+..++..+.+-.-+...|..+.-.+...+++.+|+.
T Consensus 460 h~kslqale~av~~d~~d---p~~if~--lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~ 534 (799)
T KOG4162|consen 460 HKKSLQALEEAVQFDPTD---PLVIFY--LALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALD 534 (799)
T ss_pred HHHHHHHHHHHHhcCCCC---chHHHH--HHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHH
Confidence 345666777776653221 333333 333466667788888888888776555577777777777777788888887
Q ss_pred chHHHHHHHHHHHhCC-CC------CCccccCCHhhHHHHHHHHhc------C-----------------CCHHHHHHHH
Q 038190 253 NTSAALELHEEFVNGN-GE------LGVICHPDVLSYCSIINSLCK------D-----------------VLVDKAKELF 302 (531)
Q Consensus 253 ~~~~a~~~~~~~~~~~-~~------~~~~~~~~~~~~~~ll~~~~~------~-----------------~~~~~a~~~~ 302 (531)
..+.+++-|..-...- +. .+. ..-...|...++..+-. . .+..++....
T Consensus 535 vvd~al~E~~~N~~l~~~~~~i~~~~~~-~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~s 613 (799)
T KOG4162|consen 535 VVDAALEEFGDNHVLMDGKIHIELTFND-REEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTS 613 (799)
T ss_pred HHHHHHHHhhhhhhhchhhhhhhhhccc-HHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhh
Confidence 7777666555400000 00 000 01111222222222220 0 0111111111
Q ss_pred HH-----------------HHhCCCCC--C------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 038190 303 LD-----------------MKSRGIIP--D------VVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLIN 357 (531)
Q Consensus 303 ~~-----------------~~~~~~~~--~------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~ 357 (531)
.. +...-..| + ...|......+.+.+..++|...+.+.....+ .....|.....
T Consensus 614 r~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~-l~~~~~~~~G~ 692 (799)
T KOG4162|consen 614 RYLSSLVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKIDP-LSASVYYLRGL 692 (799)
T ss_pred HHHHHHHHhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcch-hhHHHHHHhhH
Confidence 11 01111111 1 12334455567777888888777777665432 25566666667
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHH--HHHHhhhC
Q 038190 358 SYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWE--LFKKLPRY 435 (531)
Q Consensus 358 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~--~~~~~~~~ 435 (531)
.+...|.+++|.+.|..... +.|+ ++.+..++..++.+.|+..-|.. ++..+.+.
T Consensus 693 ~~~~~~~~~EA~~af~~Al~--ldP~---------------------hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~ 749 (799)
T KOG4162|consen 693 LLEVKGQLEEAKEAFLVALA--LDPD---------------------HVPSMTALAELLLELGSPRLAEKRSLLSDALRL 749 (799)
T ss_pred HHHHHHhhHHHHHHHHHHHh--cCCC---------------------CcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhh
Confidence 77788888888888877665 3444 77889999999999999888888 99999986
Q ss_pred CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 038190 436 GPEPNVVTYTVMICGLCIEGGIEKAYDLLPDME 468 (531)
Q Consensus 436 g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 468 (531)
+ +-+...|..+...+-+.|+.++|.+.|+...
T Consensus 750 d-p~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~ 781 (799)
T KOG4162|consen 750 D-PLNHEAWYYLGEVFKKLGDSKQAAECFQAAL 781 (799)
T ss_pred C-CCCHHHHHHHHHHHHHccchHHHHHHHHHHH
Confidence 4 3378899999999999999999988886543
No 92
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.99 E-value=3e-06 Score=80.15 Aligned_cols=312 Identities=10% Similarity=-0.047 Sum_probs=170.0
Q ss_pred hhHHHHHHHHHccCCHHHHHHHHHHHHhCCC-CCCHh-hHHHHHHHHHccCCcchHHHHHHHHHHCCCCCChhhHHHHHH
Q 038190 88 PSFNSLLGALAGKKYYVNFICLSERLNTIGL-LPDFV-SLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIR 165 (531)
Q Consensus 88 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~-~~~~~-~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 165 (531)
..|..+...+...|+.+.+...+.+..+... .++.. ........+...|+++.|...+++..+..+. +...+.. ..
T Consensus 7 ~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~-~~~a~~~-~~ 84 (355)
T cd05804 7 LGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPR-DLLALKL-HL 84 (355)
T ss_pred HHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHH-hH
Confidence 3455555556666677776666665543321 11221 1222233445668888888888887776432 3333332 22
Q ss_pred HHHh----cCChHHHHHHHHHHHHcCCCCCCCCcHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHH
Q 038190 166 GLCM----QGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVY 241 (531)
Q Consensus 166 ~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~ 241 (531)
.+.. .+..+.+.+.++. ..+...........+...+...|++++|...+++..+.. +.+...+..+...+
T Consensus 85 ~~~~~~~~~~~~~~~~~~l~~-----~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~ 158 (355)
T cd05804 85 GAFGLGDFSGMRDHVARVLPL-----WAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVL 158 (355)
T ss_pred HHHHhcccccCchhHHHHHhc-----cCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHH
Confidence 2222 3344444444433 122211234455566677788888888888888887753 22455667777788
Q ss_pred HhcCChhhhhcchHHHHHHHHHHHhCCCCCCccccCC--HhhHHHHHHHHhcCCCHHHHHHHHHHHHhCCC-CCCHHHH-
Q 038190 242 CCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPD--VLSYCSIINSLCKDVLVDKAKELFLDMKSRGI-IPDVVVY- 317 (531)
Q Consensus 242 ~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~- 317 (531)
...|+++++.. .++....... ..++ ...|..+...+...|++++|..++++...... .+.....
T Consensus 159 ~~~g~~~eA~~-------~l~~~l~~~~-----~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~ 226 (355)
T cd05804 159 EMQGRFKEGIA-------FMESWRDTWD-----CSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLL 226 (355)
T ss_pred HHcCCHHHHHH-------HHHhhhhccC-----CCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHh
Confidence 88888888887 5555544321 0122 23455677888889999999999988754322 1122111
Q ss_pred H--HHHHHHHhcCCHHHHHHH---HHHHHhcCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHH
Q 038190 318 S--SLIDGYCLMGRIDDARKL---FVSIESEGC-IPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAA 391 (531)
Q Consensus 318 ~--~ll~~~~~~g~~~~a~~~---~~~~~~~g~-~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~a~ 391 (531)
+ .++..+...|....+.+. ......... ............++...|+.+.|..+++.+.......+
T Consensus 227 ~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~-------- 298 (355)
T cd05804 227 DAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSAD-------- 298 (355)
T ss_pred hHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccC--------
Confidence 1 223333344433322222 111111100 11112222456677888999999999988865321100
Q ss_pred HHHHHHHhCC-CCCCHHHHHHHHHHHHcCCChHHHHHHHHHhhh
Q 038190 392 ELFRTLHNTK-FELDLTVFNCLVDGLCKSWRLRSAWELFKKLPR 434 (531)
Q Consensus 392 ~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 434 (531)
..+ .............++...|++++|.+.+.....
T Consensus 299 -------~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~ 335 (355)
T cd05804 299 -------DNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRD 335 (355)
T ss_pred -------chhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 000 001223334445566789999999999988875
No 93
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.97 E-value=3.5e-06 Score=75.22 Aligned_cols=266 Identities=14% Similarity=0.054 Sum_probs=174.9
Q ss_pred ChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC-HhhHHHHHHHHHccCCcchHHHHHHHHHHCCCCCChhhHHHHH
Q 038190 86 FMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPD-FVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLI 164 (531)
Q Consensus 86 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li 164 (531)
|+.....+...+...|+.++|+..|++....+ |+ ........-.+.+.|+.+....+...+.... ..+...|-.-.
T Consensus 231 NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~d--py~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~ 307 (564)
T KOG1174|consen 231 NEHLMMALGKCLYYNGDYFQAEDIFSSTLCAN--PDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHA 307 (564)
T ss_pred cHHHHHHHhhhhhhhcCchHHHHHHHHHhhCC--hhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhh
Confidence 56666777777777777777777777766442 22 1222222233345666666666666555432 12333343344
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCCCCCcHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhc
Q 038190 165 RGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCA 244 (531)
Q Consensus 165 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 244 (531)
..+....++..|+.+-++.+.. ++. +...|-.-...+...+++++|.-.|+...... +-+...|..+++.|...
T Consensus 308 ~~l~~~K~~~rAL~~~eK~I~~--~~r---~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La-p~rL~~Y~GL~hsYLA~ 381 (564)
T KOG1174|consen 308 QLLYDEKKFERALNFVEKCIDS--EPR---NHEALILKGRLLIALERHTQAVIAFRTAQMLA-PYRLEIYRGLFHSYLAQ 381 (564)
T ss_pred hhhhhhhhHHHHHHHHHHHhcc--Ccc---cchHHHhccHHHHhccchHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHhh
Confidence 4455667778888887777765 332 55566666677788889999988888877542 23678899999999988
Q ss_pred CChhhhhcchHHHHHHHHHHHhCCCCCCccccCCHhhHHHHH-HHHh-cCCCHHHHHHHHHHHHhCCCCCC-HHHHHHHH
Q 038190 245 VNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSII-NSLC-KDVLVDKAKELFLDMKSRGIIPD-VVVYSSLI 321 (531)
Q Consensus 245 ~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll-~~~~-~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~ll 321 (531)
|++.+|.-....+...+ +.+..+.+.+. ..|. ....-++|..+++...+. .|+ ....+.+.
T Consensus 382 ~~~kEA~~~An~~~~~~--------------~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~--~P~Y~~AV~~~A 445 (564)
T KOG1174|consen 382 KRFKEANALANWTIRLF--------------QNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKI--NPIYTPAVNLIA 445 (564)
T ss_pred chHHHHHHHHHHHHHHh--------------hcchhhhhhhcceeeccCchhHHHHHHHHHhhhcc--CCccHHHHHHHH
Confidence 88888877433333322 23444444442 2222 222347788888776654 454 34456667
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 038190 322 DGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISM 378 (531)
Q Consensus 322 ~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 378 (531)
..+...|..++++.+++..+.. .||....+.|...+...+.+.+|++.|....+.
T Consensus 446 EL~~~Eg~~~D~i~LLe~~L~~--~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~ 500 (564)
T KOG1174|consen 446 ELCQVEGPTKDIIKLLEKHLII--FPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQ 500 (564)
T ss_pred HHHHhhCccchHHHHHHHHHhh--ccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 7788889999999999987764 578888899999999999999999999888764
No 94
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.87 E-value=1.3e-07 Score=84.75 Aligned_cols=249 Identities=16% Similarity=0.112 Sum_probs=140.7
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCCCCCcHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHh
Q 038190 164 IRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCC 243 (531)
Q Consensus 164 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~ 243 (531)
++-+.-.|.+..++.-.+ .... .+ ..+......+.+++...|.++.++ .++.... .|.......+...+..
T Consensus 8 vrn~fy~G~Y~~~i~e~~-~~~~--~~--~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~ 78 (290)
T PF04733_consen 8 VRNQFYLGNYQQCINEAS-LKSF--SP--ENKLERDFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSS 78 (290)
T ss_dssp HHHHHCTT-HHHHCHHHH-CHTS--TC--HHHHHHHHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCT
T ss_pred HHHHHHhhhHHHHHHHhh-ccCC--Cc--hhHHHHHHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhC
Confidence 444555678777776665 3221 22 123445556777888888766543 3443332 4555555444433322
Q ss_pred cCChhhhhcchHHHHHHHHHHHhCCCCCCcccc-CCHhhHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 038190 244 AVNWEDAKGNTSAALELHEEFVNGNGELGVICH-PDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLID 322 (531)
Q Consensus 244 ~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~-~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 322 (531)
..+.+.+.. -++...... .. .+..........+...|++++|++++... .+.......++
T Consensus 79 ~~~~e~~l~-------~l~~~~~~~------~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vq 139 (290)
T PF04733_consen 79 PSDKESALE-------ELKELLADQ------AGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQ 139 (290)
T ss_dssp STTHHCHHH-------HHHHCCCTS---------CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHH
T ss_pred ccchHHHHH-------HHHHHHHhc------cccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHH
Confidence 122222211 333322222 12 22223333345566778888888877542 35666777788
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHH
Q 038190 323 GYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSK----IEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLH 398 (531)
Q Consensus 323 ~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 398 (531)
.|.+.++++.|.+.++.|.+.+ .| .+...+..++.. ...+.+|..+|+++.+.
T Consensus 140 i~L~~~R~dlA~k~l~~~~~~~--eD-~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-------------------- 196 (290)
T PF04733_consen 140 ILLKMNRPDLAEKELKNMQQID--ED-SILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-------------------- 196 (290)
T ss_dssp HHHHTT-HHHHHHHHHHHHCCS--CC-HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC--------------------
T ss_pred HHHHcCCHHHHHHHHHHHHhcC--Cc-HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc--------------------
Confidence 8888888888888888887653 23 333344444432 33577888888887553
Q ss_pred hCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHcCCH-HHHHHHHHHH
Q 038190 399 NTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGI-EKAYDLLPDM 467 (531)
Q Consensus 399 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~-~~A~~~~~~~ 467 (531)
+.+++.+.+.+..++...|++++|.+++.+..+.. +-++.+...++.+....|+. +.+.+++.++
T Consensus 197 ---~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~-~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL 262 (290)
T PF04733_consen 197 ---FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKD-PNDPDTLANLIVCSLHLGKPTEAAERYLSQL 262 (290)
T ss_dssp ---S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC--CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHC
T ss_pred ---cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc-cCCHHHHHHHHHHHHHhCCChhHHHHHHHHH
Confidence 13377888888888888888888888888877643 23566777777777777776 4454444443
No 95
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.87 E-value=7.7e-05 Score=69.31 Aligned_cols=141 Identities=11% Similarity=0.029 Sum_probs=94.9
Q ss_pred HHHHcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCcchHHHHHHHHHHCCCCCC
Q 038190 77 YMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPD 156 (531)
Q Consensus 77 ~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~ 156 (531)
+-++.+|. |..+|+.||+-+..+ .++++.+.++++... ++-.+..|..-|..-....+++.++.+|.+-+..- .+
T Consensus 11 ~rie~nP~-di~sw~~lire~qt~-~~~~~R~~YEq~~~~-FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkv--Ln 85 (656)
T KOG1914|consen 11 ERIEENPY-DIDSWSQLIREAQTQ-PIDKVRETYEQLVNV-FPSSPRAWKLYIERELASKDFESVEKLFSRCLVKV--LN 85 (656)
T ss_pred HHHhcCCc-cHHHHHHHHHHHccC-CHHHHHHHHHHHhcc-CCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH--hh
Confidence 33445565 899999999988666 999999999999854 24456789999999999999999999999988763 45
Q ss_pred hhhHHHHHHHHHh-cCChHH----HHHHHHHHH-HcCCCCCCCCcHHhHHHHHHH---------HHhcCChhHHHHHHHH
Q 038190 157 VVTLGCLIRGLCM-QGKFTE----ASGLFTKFV-AFDCRPNVIPNVICYASIIDG---------LCKDGFVNKVRVLFLD 221 (531)
Q Consensus 157 ~~~~~~li~~~~~-~g~~~~----a~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~---------~~~~~~~~~a~~~~~~ 221 (531)
...|...+.---+ .|+... ..+.|+-.. ..|.++. +...|+..+.. |..+.+.+...++|.+
T Consensus 86 lDLW~lYl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~---s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqr 162 (656)
T KOG1914|consen 86 LDLWKLYLSYVRETKGKLFGYREKMVQAYDFALEKIGMDIK---SYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQR 162 (656)
T ss_pred HhHHHHHHHHHHHHccCcchHHHHHHHHHHHHHHHhccCcc---cchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHH
Confidence 6677766653322 233222 223333332 2343442 44566666653 3344567778888888
Q ss_pred HhhC
Q 038190 222 MKGR 225 (531)
Q Consensus 222 m~~~ 225 (531)
+...
T Consensus 163 al~t 166 (656)
T KOG1914|consen 163 ALVT 166 (656)
T ss_pred HhcC
Confidence 8764
No 96
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.87 E-value=2e-07 Score=83.50 Aligned_cols=82 Identities=15% Similarity=0.139 Sum_probs=37.5
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCH-HHHHHHH
Q 038190 294 LVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKV-EEALSLY 372 (531)
Q Consensus 294 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~~~~-~~a~~~~ 372 (531)
.+.+|..+|+++.+. ..+++.+.+.+..++...|++++|.+++.+..+.+.. +..+...++.+....|+. +.+.+++
T Consensus 182 ~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~-~~d~LaNliv~~~~~gk~~~~~~~~l 259 (290)
T PF04733_consen 182 KYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPN-DPDTLANLIVCSLHLGKPTEAAERYL 259 (290)
T ss_dssp CCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CC-HHHHHHHHHHHHHHTT-TCHHHHHHH
T ss_pred hHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccC-CHHHHHHHHHHHHHhCCChhHHHHHH
Confidence 355555555554433 3345555555555555555555555555555443322 334444444444444444 3344444
Q ss_pred HHHHh
Q 038190 373 GEMIS 377 (531)
Q Consensus 373 ~~~~~ 377 (531)
..+..
T Consensus 260 ~qL~~ 264 (290)
T PF04733_consen 260 SQLKQ 264 (290)
T ss_dssp HHCHH
T ss_pred HHHHH
Confidence 44443
No 97
>PLN02789 farnesyltranstransferase
Probab=98.86 E-value=4.7e-06 Score=75.75 Aligned_cols=212 Identities=9% Similarity=0.019 Sum_probs=129.0
Q ss_pred ccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccC-CcchHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCh--HH
Q 038190 99 GKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMI-GVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKF--TE 175 (531)
Q Consensus 99 ~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~--~~ 175 (531)
..++.++|+.+.+++++.. +-+..+|+....++...| ++++++..++++++..+. +..+|+....++.+.|+. ++
T Consensus 49 ~~e~serAL~lt~~aI~ln-P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npk-nyqaW~~R~~~l~~l~~~~~~~ 126 (320)
T PLN02789 49 SDERSPRALDLTADVIRLN-PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPK-NYQIWHHRRWLAEKLGPDAANK 126 (320)
T ss_pred cCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCc-chHHhHHHHHHHHHcCchhhHH
Confidence 3455667777777776653 333345555555555555 467777777777766543 445666555555555542 56
Q ss_pred HHHHHHHHHHcCCCCCCCCcHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChhhhhcchH
Q 038190 176 ASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTS 255 (531)
Q Consensus 176 a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~ 255 (531)
++.+++++.+. +|. +..+|+...-++...|+++++++.++++.+.+.. +...|+.....+.+.+....-....+
T Consensus 127 el~~~~kal~~--dpk---Ny~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~~~~~~~e 200 (320)
T PLN02789 127 ELEFTRKILSL--DAK---NYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLLGGLEAMRD 200 (320)
T ss_pred HHHHHHHHHHh--Ccc---cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhccccccccccHH
Confidence 67777777765 332 6777777777777777888888888887776544 55556555544444322111111233
Q ss_pred HHHHHHHHHHhCCCCCCccccCCHhhHHHHHHHHhcC----CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 038190 256 AALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKD----VLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCL 326 (531)
Q Consensus 256 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~----~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 326 (531)
..++......... +-+...|+-+...+... +...+|.+.+.+..+.+ ..+......|+..|+.
T Consensus 201 ~el~y~~~aI~~~-------P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~-~~s~~al~~l~d~~~~ 267 (320)
T PLN02789 201 SELKYTIDAILAN-------PRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKD-SNHVFALSDLLDLLCE 267 (320)
T ss_pred HHHHHHHHHHHhC-------CCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhccc-CCcHHHHHHHHHHHHh
Confidence 4455665655544 44667777777777663 34466878887766653 2366777888888875
No 98
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.85 E-value=2.2e-05 Score=78.00 Aligned_cols=108 Identities=19% Similarity=0.088 Sum_probs=61.9
Q ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHcCCHHHHHHH-------HHHHHHHH------h
Q 038190 406 LTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDL-------LPDMEEKI------R 472 (531)
Q Consensus 406 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~-------~~~~~~~i------~ 472 (531)
+.-|..|...+...|+++.|.+.-++.- +..||..+-.+|...+.+.-|.-. -+++.+.| |
T Consensus 1220 vSN~a~La~TLV~LgeyQ~AVD~aRKAn------s~ktWK~VcfaCvd~~EFrlAQiCGL~iivhadeLeeli~~Yq~rG 1293 (1666)
T KOG0985|consen 1220 VSNFAKLASTLVYLGEYQGAVDAARKAN------STKTWKEVCFACVDKEEFRLAQICGLNIIVHADELEELIEYYQDRG 1293 (1666)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhhcc------chhHHHHHHHHHhchhhhhHHHhcCceEEEehHhHHHHHHHHHhcC
Confidence 3467777778888888888877665543 556777777777777666655210 01111111 4
Q ss_pred hHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhccCChhHHHhhHHHhhhc
Q 038190 473 ECLKAIELLHKMAKRYVKPD-EITVSILEELLNKDENCHECMNLLPSFLSR 522 (531)
Q Consensus 473 ~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 522 (531)
-+++-+.+++..+ |+..- ...|+-|.-.|.+- +.++.++-++-+-.+
T Consensus 1294 yFeElIsl~Ea~L--GLERAHMgmfTELaiLYsky-kp~km~EHl~LFwsR 1341 (1666)
T KOG0985|consen 1294 YFEELISLLEAGL--GLERAHMGMFTELAILYSKY-KPEKMMEHLKLFWSR 1341 (1666)
T ss_pred cHHHHHHHHHhhh--chhHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHh
Confidence 4555555555444 43322 24566677677665 566666666554444
No 99
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.83 E-value=9.5e-06 Score=69.33 Aligned_cols=284 Identities=15% Similarity=0.093 Sum_probs=193.3
Q ss_pred CHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHH-HHHHHHccCCcchHHHHH
Q 038190 67 ELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNI-LMNCFCKMIGVSDAFVAL 145 (531)
Q Consensus 67 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~-li~~~~~~g~~~~a~~~~ 145 (531)
++++|++++....++.++ +......|...|-...++..|-+.|+++-.. .|...-|.. -...+-+.+.+.+|+.+.
T Consensus 25 ry~DaI~~l~s~~Er~p~-~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSLY~A~i~ADALrV~ 101 (459)
T KOG4340|consen 25 RYADAIQLLGSELERSPR-SRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSLYKACIYADALRVA 101 (459)
T ss_pred hHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHHHHhcccHHHHHHH
Confidence 799999999998887665 7888888999999999999999999999765 344443332 234556778999999999
Q ss_pred HHHHHCCCCCChhhHHHHH--HHHHhcCChHHHHHHHHHHHHcCCCCCCCCcHHhHHHHHHHHHhcCChhHHHHHHHHHh
Q 038190 146 GRILRKVFSPDVVTLGCLI--RGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMK 223 (531)
Q Consensus 146 ~~~~~~~~~~~~~~~~~li--~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 223 (531)
..|... ++...-..-+ ...-..+|+..+..++++....+ +..+.+...-...+.|+++.|.+-|+...
T Consensus 102 ~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en-------~Ad~~in~gCllykegqyEaAvqkFqaAl 171 (459)
T KOG4340|consen 102 FLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN-------EADGQINLGCLLYKEGQYEAAVQKFQAAL 171 (459)
T ss_pred HHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC-------ccchhccchheeeccccHHHHHHHHHHHH
Confidence 887643 2222111111 22335688888999888876422 44555556666678999999999999988
Q ss_pred hC-CCCCCHhhHHHHHHHHHhcCChhhhhcchHHHHHHHHHHHhCC----CCCCcccc---CC---------------Hh
Q 038190 224 GR-GIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGN----GELGVICH---PD---------------VL 280 (531)
Q Consensus 224 ~~-g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~----~~~~~~~~---~~---------------~~ 280 (531)
+- |.. ....|+..+. +.+.++++.|++ ...++.+.| ++.|.... +| +.
T Consensus 172 qvsGyq-pllAYniALa-Hy~~~qyasALk-------~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~e 242 (459)
T KOG4340|consen 172 QVSGYQ-PLLAYNLALA-HYSSRQYASALK-------HISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVE 242 (459)
T ss_pred hhcCCC-chhHHHHHHH-HHhhhhHHHHHH-------HHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHH
Confidence 75 555 5566776664 445666666666 766666655 22222111 11 12
Q ss_pred hHHHHHHHHhcCCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 038190 281 SYCSIINSLCKDVLVDKAKELFLDMKSR-GIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSY 359 (531)
Q Consensus 281 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~ 359 (531)
.+|.-...+.+.++++.|.+-+-.|.-. ....|+.|...+.-. ...+++....+-+.-+.+.++- ...||..++-.|
T Consensus 243 AfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~-n~~~~p~~g~~KLqFLL~~nPf-P~ETFANlLlly 320 (459)
T KOG4340|consen 243 AFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALM-NMDARPTEGFEKLQFLLQQNPF-PPETFANLLLLY 320 (459)
T ss_pred HhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHh-cccCCccccHHHHHHHHhcCCC-ChHHHHHHHHHH
Confidence 2333334456788999999888888654 245577777665432 2245666666777777777654 567888899999
Q ss_pred HhcCCHHHHHHHHHH
Q 038190 360 SKIEKVEEALSLYGE 374 (531)
Q Consensus 360 ~~~~~~~~a~~~~~~ 374 (531)
|++.-++-|..++.+
T Consensus 321 CKNeyf~lAADvLAE 335 (459)
T KOG4340|consen 321 CKNEYFDLAADVLAE 335 (459)
T ss_pred hhhHHHhHHHHHHhh
Confidence 999999988888755
No 100
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.81 E-value=6.1e-07 Score=83.50 Aligned_cols=221 Identities=15% Similarity=0.078 Sum_probs=160.7
Q ss_pred cCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCcchHHHH
Q 038190 65 EVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVA 144 (531)
Q Consensus 65 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~ 144 (531)
.|++.+|.-.|+..++.+|. +..+|..|....+.+++-..|+..+.+.++.. +-|..+.-.|.-.|...|.-..|..+
T Consensus 298 nG~L~~A~LafEAAVkqdP~-haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~q~~Al~~ 375 (579)
T KOG1125|consen 298 NGDLSEAALAFEAAVKQDPQ-HAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGLQNQALKM 375 (579)
T ss_pred cCCchHHHHHHHHHHhhChH-HHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhHHHHHHH
Confidence 46899999999999998887 88999999999999999999999999999875 44666777777777776666666665
Q ss_pred HHHHHH------------------------------------------CCCCCChhhHHHHHHHHHhcCChHHHHHHHHH
Q 038190 145 LGRILR------------------------------------------KVFSPDVVTLGCLIRGLCMQGKFTEASGLFTK 182 (531)
Q Consensus 145 ~~~~~~------------------------------------------~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 182 (531)
++.-+. .+..+|..++..|.-.|--.|++++|.+.|+.
T Consensus 376 L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~ 455 (579)
T KOG1125|consen 376 LDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEA 455 (579)
T ss_pred HHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHH
Confidence 554432 22235677777788888888999999999999
Q ss_pred HHHcCCCCCCCCcHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCC-HhhHHHHHHHHHhcCChhhhhcchHHHHHHH
Q 038190 183 FVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPD-AFVYNSLIRVYCCAVNWEDAKGNTSAALELH 261 (531)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~~~~~~a~~~~~~a~~~~ 261 (531)
.+.. .|+ |..+||-|...++...+.++|+..|++.++. +|+ +.+...|.-.|...|.+++|.+.+-.|+.+-
T Consensus 456 AL~v--~Pn---d~~lWNRLGAtLAN~~~s~EAIsAY~rALqL--qP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq 528 (579)
T KOG1125|consen 456 ALQV--KPN---DYLLWNRLGATLANGNRSEEAISAYNRALQL--QPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQ 528 (579)
T ss_pred HHhc--CCc---hHHHHHHhhHHhcCCcccHHHHHHHHHHHhc--CCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhh
Confidence 8876 664 8889999999999999999999999998875 454 2333445557888898888888777776654
Q ss_pred HHHHhCCCCCCccccCCHhhHHHHHHHHhcCCCHHHH
Q 038190 262 EEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKA 298 (531)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a 298 (531)
+.-...... ..++...|.+|=.++...++.|.+
T Consensus 529 ~ks~~~~~~----~~~se~iw~tLR~als~~~~~D~l 561 (579)
T KOG1125|consen 529 RKSRNHNKA----PMASENIWQTLRLALSAMNRSDLL 561 (579)
T ss_pred hcccccccC----CcchHHHHHHHHHHHHHcCCchHH
Confidence 442221100 122344555555555555555433
No 101
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.81 E-value=3.5e-05 Score=76.62 Aligned_cols=80 Identities=11% Similarity=0.031 Sum_probs=61.4
Q ss_pred CHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhC-----------CCCCCHhhHHHHHHHHHcc
Q 038190 67 ELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTI-----------GLLPDFVSLNILMNCFCKM 135 (531)
Q Consensus 67 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-----------g~~~~~~~~~~li~~~~~~ 135 (531)
.++++.+.+..|...+++-|..+.-.+..-|...=-.+..+++|+..+.. ++.-|+...-..|.+.++.
T Consensus 658 sve~s~eclkaml~~NirqNlQi~VQvatky~eqlg~~~li~lFE~fks~eGL~yfLgSivn~seDpevh~KYIqAA~kt 737 (1666)
T KOG0985|consen 658 SVEDSLECLKAMLSANIRQNLQIVVQVATKYHEQLGAQALIELFESFKSYEGLYYFLGSIVNFSEDPEVHFKYIQAACKT 737 (1666)
T ss_pred CHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCHHHHHHHHHhhccchhHHHHHHHHhccccCchHHHHHHHHHHhh
Confidence 58899999999998888888887777777777666677778888876543 2456777788889999999
Q ss_pred CCcchHHHHHH
Q 038190 136 IGVSDAFVALG 146 (531)
Q Consensus 136 g~~~~a~~~~~ 146 (531)
|++.+..++-+
T Consensus 738 ~QikEvERicr 748 (1666)
T KOG0985|consen 738 GQIKEVERICR 748 (1666)
T ss_pred ccHHHHHHHHh
Confidence 88877766543
No 102
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.80 E-value=7.4e-06 Score=79.45 Aligned_cols=362 Identities=15% Similarity=0.088 Sum_probs=205.7
Q ss_pred ChhhHHHHHH--HHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCcchHHHHHHHHHHCC---------CC
Q 038190 86 FMPSFNSLLG--ALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKV---------FS 154 (531)
Q Consensus 86 ~~~~~~~li~--~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~---------~~ 154 (531)
|..+-..+++ .|..-|+.+.|.+-.+.++ +...|..+.+.|.+..+++-|.-.+..|.... -.
T Consensus 725 d~~TRkaml~FSfyvtiG~MD~AfksI~~Ik------S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~ 798 (1416)
T KOG3617|consen 725 DESTRKAMLDFSFYVTIGSMDAAFKSIQFIK------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQN 798 (1416)
T ss_pred CHHHHHhhhceeEEEEeccHHHHHHHHHHHh------hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhC
Confidence 5566667765 3678899999988777655 45689999999999999998887777765421 11
Q ss_pred CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCCCcHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHhhH
Q 038190 155 PDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVY 234 (531)
Q Consensus 155 ~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~ 234 (531)
++ .+-....-.....|.+++|+.+|.+-.+ |..|=..|-..|.|++|.++-+.--.-.+ ..||
T Consensus 799 ~~-e~eakvAvLAieLgMlEeA~~lYr~ckR-------------~DLlNKlyQs~g~w~eA~eiAE~~DRiHL---r~Ty 861 (1416)
T KOG3617|consen 799 GE-EDEAKVAVLAIELGMLEEALILYRQCKR-------------YDLLNKLYQSQGMWSEAFEIAETKDRIHL---RNTY 861 (1416)
T ss_pred Cc-chhhHHHHHHHHHhhHHHHHHHHHHHHH-------------HHHHHHHHHhcccHHHHHHHHhhccceeh---hhhH
Confidence 21 2222233345678999999999998875 44455667788999999988654332222 2344
Q ss_pred HHHHHHHHhcCChhhhhcchHH----HHHHHHHHHhCCCCCCc--cccCCHhhHHHHHHHHhcCCCHHHHHHHHHHHHhC
Q 038190 235 NSLIRVYCCAVNWEDAKGNTSA----ALELHEEFVNGNGELGV--ICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSR 308 (531)
Q Consensus 235 ~~li~~~~~~~~~~~a~~~~~~----a~~~~~~~~~~~~~~~~--~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 308 (531)
.....-+-..++.+.|++.|++ |.++++.+.+..+.... .-..|...|.--...+...|+.+.|+.+|....+
T Consensus 862 y~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D- 940 (1416)
T KOG3617|consen 862 YNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD- 940 (1416)
T ss_pred HHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh-
Confidence 4444445555666666665544 33343333321100000 0012233344444445556777777777665543
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHH
Q 038190 309 GIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCIL 388 (531)
Q Consensus 309 ~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 388 (531)
|-.+++..|-.|+.++|-++-++-. |......|.+.|...|++.+|..+|.+... +.
T Consensus 941 --------~fs~VrI~C~qGk~~kAa~iA~esg------d~AAcYhlaR~YEn~g~v~~Av~FfTrAqa---------fs 997 (1416)
T KOG3617|consen 941 --------YFSMVRIKCIQGKTDKAARIAEESG------DKAACYHLARMYENDGDVVKAVKFFTRAQA---------FS 997 (1416)
T ss_pred --------hhhheeeEeeccCchHHHHHHHhcc------cHHHHHHHHHHhhhhHHHHHHHHHHHHHHH---------HH
Confidence 3445555666777777776655422 455556677888888888888888877643 22
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHcC--CChHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 038190 389 EAAELFRTLHNTKFELDLTVFNCLVDGLCKS--WRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPD 466 (531)
Q Consensus 389 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 466 (531)
.|+++.+ +.++ -..|...+... .+.-.|-.+|++.-. . +..-+..|-++|.+.+|+++-=+
T Consensus 998 nAIRlcK---End~------~d~L~nlal~s~~~d~v~aArYyEe~g~---~-----~~~AVmLYHkAGm~~kALelAF~ 1060 (1416)
T KOG3617|consen 998 NAIRLCK---ENDM------KDRLANLALMSGGSDLVSAARYYEELGG---Y-----AHKAVMLYHKAGMIGKALELAFR 1060 (1416)
T ss_pred HHHHHHH---hcCH------HHHHHHHHhhcCchhHHHHHHHHHHcch---h-----hhHHHHHHHhhcchHHHHHHHHh
Confidence 2333322 1111 11122222222 233344555554321 1 11223357777777777765432
Q ss_pred HHHHHhhHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChhHHHhhHHH
Q 038190 467 MEEKIRECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLLPS 518 (531)
Q Consensus 467 ~~~~i~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 518 (531)
-++ -.|++++-+=+ ....|+..++...+-++...++++|..++-.
T Consensus 1061 tqQ-----f~aL~lIa~DL--d~~sDp~ll~RcadFF~~~~qyekAV~lL~~ 1105 (1416)
T KOG3617|consen 1061 TQQ-----FSALDLIAKDL--DAGSDPKLLRRCADFFENNQQYEKAVNLLCL 1105 (1416)
T ss_pred hcc-----cHHHHHHHHhc--CCCCCHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 221 13333333323 3335666677777777777777777766543
No 103
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.78 E-value=1.4e-06 Score=81.20 Aligned_cols=258 Identities=15% Similarity=0.073 Sum_probs=180.0
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCCCCCcHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhc
Q 038190 165 RGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCA 244 (531)
Q Consensus 165 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 244 (531)
.-+.+.|++.+|.-.|+..+.. +|. +..+|..|.......++-..|+..+.+..+.... +....-.|.-.|...
T Consensus 293 ~~lm~nG~L~~A~LafEAAVkq--dP~---haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~-NleaLmaLAVSytNe 366 (579)
T KOG1125|consen 293 CNLMKNGDLSEAALAFEAAVKQ--DPQ---HAEAWQKLGITQAENENEQNAISALRRCLELDPT-NLEALMALAVSYTNE 366 (579)
T ss_pred HHHHhcCCchHHHHHHHHHHhh--ChH---HHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCc-cHHHHHHHHHHHhhh
Confidence 3467789999999999999887 553 7889999999999999999999999999886332 566666777778877
Q ss_pred CChhhhhcchHHHHHHHHHHHhCCCCCCcccc--CCHhhHHHHHHHHhcCCCHHHHHHHHHHH-HhCCCCCCHHHHHHHH
Q 038190 245 VNWEDAKGNTSAALELHEEFVNGNGELGVICH--PDVLSYCSIINSLCKDVLVDKAKELFLDM-KSRGIIPDVVVYSSLI 321 (531)
Q Consensus 245 ~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~--~~~~~~~~ll~~~~~~~~~~~a~~~~~~~-~~~~~~~~~~~~~~ll 321 (531)
|.-..|.. .++.............. ++...-.. ..+.....+....++|-++ ...+..+|+.+...|-
T Consensus 367 g~q~~Al~-------~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LG 437 (579)
T KOG1125|consen 367 GLQNQALK-------MLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLG 437 (579)
T ss_pred hhHHHHHH-------HHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhH
Confidence 77666666 66666443311111000 00000000 1112222234444555444 4445456777788888
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHhCC
Q 038190 322 DGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTK 401 (531)
Q Consensus 322 ~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 401 (531)
-.|--.|++++|.+.|+..+...+. |...||.|...++...+.++|+..|.+.++ +.|.
T Consensus 438 VLy~ls~efdraiDcf~~AL~v~Pn-d~~lWNRLGAtLAN~~~s~EAIsAY~rALq--LqP~------------------ 496 (579)
T KOG1125|consen 438 VLYNLSGEFDRAVDCFEAALQVKPN-DYLLWNRLGATLANGNRSEEAISAYNRALQ--LQPG------------------ 496 (579)
T ss_pred HHHhcchHHHHHHHHHHHHHhcCCc-hHHHHHHhhHHhcCCcccHHHHHHHHHHHh--cCCC------------------
Confidence 8889999999999999999987654 889999999999999999999999999987 3443
Q ss_pred CCCCHHHHHHHHHHHHcCCChHHHHHHHHHhhh---C------CCCCcHHHHHHHHHHHHHcCCHHHHH
Q 038190 402 FELDLTVFNCLVDGLCKSWRLRSAWELFKKLPR---Y------GPEPNVVTYTVMICGLCIEGGIEKAY 461 (531)
Q Consensus 402 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~------g~~p~~~~~~~l~~~~~~~g~~~~A~ 461 (531)
-+.+.-.|.-+|...|.+.+|.+.|-..+. . +..++...|..|=.++.-.++.+-+.
T Consensus 497 ---yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~ 562 (579)
T KOG1125|consen 497 ---YVRVRYNLGISCMNLGAYKEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQ 562 (579)
T ss_pred ---eeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHH
Confidence 345666788889999999999999877653 1 11223456666666666666666443
No 104
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.78 E-value=9.7e-05 Score=73.64 Aligned_cols=382 Identities=13% Similarity=-0.006 Sum_probs=176.7
Q ss_pred CHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCcchHHH---
Q 038190 67 ELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFV--- 143 (531)
Q Consensus 67 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~--- 143 (531)
+...|+..|-+..+..+. =...|..|...|....+...|.+.|....+.. ..+...+..+...|++..+++.|..
T Consensus 473 ~~~~al~ali~alrld~~-~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~I~l 550 (1238)
T KOG1127|consen 473 NSALALHALIRALRLDVS-LAPAFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFEICL 550 (1238)
T ss_pred hHHHHHHHHHHHHhcccc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHHHHH
Confidence 455555555555443332 22345555555555555555555555555443 2334444455555555555555444
Q ss_pred ---------------------------------HHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 038190 144 ---------------------------------ALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRP 190 (531)
Q Consensus 144 ---------------------------------~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~ 190 (531)
.|+...+..+. |...|..+..+|.++|++..|+++|.+.... .|
T Consensus 551 ~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPk-D~n~W~gLGeAY~~sGry~~AlKvF~kAs~L--rP 627 (1238)
T KOG1127|consen 551 RAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPK-DYNLWLGLGEAYPESGRYSHALKVFTKASLL--RP 627 (1238)
T ss_pred HHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCch-hHHHHHHHHHHHHhcCceehHHHhhhhhHhc--Cc
Confidence 44444443322 5566777777777777777777777666654 33
Q ss_pred CCCCcHHhHHHHHHHHHhcCChhHHHHHHHHHhhC------CCCCCHhhHHHHHHHHHhcCChhhhhcchHHHHHHHHHH
Q 038190 191 NVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGR------GIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEF 264 (531)
Q Consensus 191 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~------g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~a~~~~~~~ 264 (531)
. +...---..-.-+..|.+.+|...+...... +..--..++..+...+...|-...+...++.+++.|.-.
T Consensus 628 ~---s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~ 704 (1238)
T KOG1127|consen 628 L---SKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVS 704 (1238)
T ss_pred H---hHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHH
Confidence 1 2222122223345566777776666655432 111112223333333333344444444555555555444
Q ss_pred HhCCCCCCccccCCHhhHHHHHHHHhcCCCHH------HHHHH-HHHHHhCCCC--------------------CCHHHH
Q 038190 265 VNGNGELGVICHPDVLSYCSIINSLCKDVLVD------KAKEL-FLDMKSRGII--------------------PDVVVY 317 (531)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~------~a~~~-~~~~~~~~~~--------------------~~~~~~ 317 (531)
.... ...+...|-.+-.+|.-.-..+ ....+ +.+....+.. .+..+|
T Consensus 705 l~h~------~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~W 778 (1238)
T KOG1127|consen 705 LIHS------LQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPW 778 (1238)
T ss_pred HHHh------hhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchH
Confidence 3332 1112222221111111000000 00000 1111111111 122233
Q ss_pred HHHHHHHHh----c----CCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC------
Q 038190 318 SSLIDGYCL----M----GRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD------ 383 (531)
Q Consensus 318 ~~ll~~~~~----~----g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~------ 383 (531)
..+...|.+ . .+...|...+.+..+..- -+..+|+.|.-. ...|.+.-|...|-.-... .|.
T Consensus 779 yNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L~a-nn~~~WnaLGVl-sg~gnva~aQHCfIks~~s--ep~~~~~W~ 854 (1238)
T KOG1127|consen 779 YNLGINYLRYFLLLGETMKDACTAIRCCKKAVSLCA-NNEGLWNALGVL-SGIGNVACAQHCFIKSRFS--EPTCHCQWL 854 (1238)
T ss_pred HHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHHhh-ccHHHHHHHHHh-hccchhhhhhhhhhhhhhc--cccchhhee
Confidence 333322222 1 123356666666554321 255666665544 4446666665555443321 121
Q ss_pred --------cccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHh--hh--CCCCCcHHHHHHHHHHH
Q 038190 384 --------NSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKL--PR--YGPEPNVVTYTVMICGL 451 (531)
Q Consensus 384 --------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~--~g~~p~~~~~~~l~~~~ 451 (531)
..+++.|.+.|.......+. |...|-.........|+.-++..+|..- .. .|-.|+..-|-+.....
T Consensus 855 NlgvL~l~n~d~E~A~~af~~~qSLdP~-nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h 933 (1238)
T KOG1127|consen 855 NLGVLVLENQDFEHAEPAFSSVQSLDPL-NLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIH 933 (1238)
T ss_pred ccceeEEecccHHHhhHHHHhhhhcCch-hhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHH
Confidence 56677777777776655322 5555655555555677777777777652 21 23344555555544455
Q ss_pred HHcCCHHHHHHHHHHH
Q 038190 452 CIEGGIEKAYDLLPDM 467 (531)
Q Consensus 452 ~~~g~~~~A~~~~~~~ 467 (531)
..+|+.++-+...+++
T Consensus 934 ~~Ng~~e~~I~t~~ki 949 (1238)
T KOG1127|consen 934 LQNGNIEESINTARKI 949 (1238)
T ss_pred HhccchHHHHHHhhhh
Confidence 5666666555444443
No 105
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.75 E-value=0.00012 Score=64.22 Aligned_cols=341 Identities=12% Similarity=0.060 Sum_probs=224.5
Q ss_pred CCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhh-HHHHHHHHHccCCcchHHHH
Q 038190 66 VELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVS-LNILMNCFCKMIGVSDAFVA 144 (531)
Q Consensus 66 g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~-~~~li~~~~~~g~~~~a~~~ 144 (531)
|.+.+|+.-|...++-+|. +-.++-.-...|...|+-..|+.=+.+.++. +||-.. -..-...+.+.|.++.|..-
T Consensus 52 ~Q~sDALt~yHaAve~dp~-~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQRg~vllK~Gele~A~~D 128 (504)
T KOG0624|consen 52 GQLSDALTHYHAAVEGDPN-NYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQRGVVLLKQGELEQAEAD 128 (504)
T ss_pred hhHHHHHHHHHHHHcCCch-hHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHhchhhhhcccHHHHHHH
Confidence 3789999999888775544 3333444445788889988898888888876 677532 22233467799999999999
Q ss_pred HHHHHHCCCCCCh--hhH------------HHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCCCcHHhHHHHHHHHHhcC
Q 038190 145 LGRILRKVFSPDV--VTL------------GCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDG 210 (531)
Q Consensus 145 ~~~~~~~~~~~~~--~~~------------~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 210 (531)
|+.+++..+..+. .++ ...+..+...|+...|+.....+++. .| .|...|..-..+|...|
T Consensus 129 F~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi--~~---Wda~l~~~Rakc~i~~~ 203 (504)
T KOG0624|consen 129 FDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEI--QP---WDASLRQARAKCYIAEG 203 (504)
T ss_pred HHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhc--Cc---chhHHHHHHHHHHHhcC
Confidence 9999987542111 111 22344566689999999999999875 33 47888888899999999
Q ss_pred ChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChhhhhcchHHHHHHHHHHHhCCCCCCccccCCHhh----HHH--
Q 038190 211 FVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLS----YCS-- 284 (531)
Q Consensus 211 ~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~----~~~-- 284 (531)
++..|+.=++...+..-. +..++--+-..+...|+.+.++. ..++..+.+ ||... |-.
T Consensus 204 e~k~AI~Dlk~askLs~D-nTe~~ykis~L~Y~vgd~~~sL~-------~iRECLKld--------pdHK~Cf~~YKklk 267 (504)
T KOG0624|consen 204 EPKKAIHDLKQASKLSQD-NTEGHYKISQLLYTVGDAENSLK-------EIRECLKLD--------PDHKLCFPFYKKLK 267 (504)
T ss_pred cHHHHHHHHHHHHhcccc-chHHHHHHHHHHHhhhhHHHHHH-------HHHHHHccC--------cchhhHHHHHHHHH
Confidence 999999888777665333 45555566667788888888888 555554433 44322 111
Q ss_pred -------HHHHHhcCCCHHHHHHHHHHHHhCCCCCCHH---HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHH
Q 038190 285 -------IINSLCKDVLVDKAKELFLDMKSRGIIPDVV---VYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNT 354 (531)
Q Consensus 285 -------ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~ 354 (531)
-+......++|.++++-.+...+........ .+..+-.+|...|++.+|++...+.++.... |+.++.-
T Consensus 268 Kv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~-dv~~l~d 346 (504)
T KOG0624|consen 268 KVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPD-DVQVLCD 346 (504)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCch-HHHHHHH
Confidence 1233455778888888888887764332222 3444556677789999999999999876322 4778888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCC--cccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHh
Q 038190 355 LINSYSKIEKVEEALSLYGEMISMGVRPD--NSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKL 432 (531)
Q Consensus 355 li~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 432 (531)
-..+|.-...++.|+.-|+...+.+-..+ ...++.|.++.+...+. | -|-+| +--+...-.+..+.|++|
T Consensus 347 RAeA~l~dE~YD~AI~dye~A~e~n~sn~~~reGle~Akrlkkqs~kR----D--YYKIL--GVkRnAsKqEI~KAYRKl 418 (504)
T KOG0624|consen 347 RAEAYLGDEMYDDAIHDYEKALELNESNTRAREGLERAKRLKKQSGKR----D--YYKIL--GVKRNASKQEITKAYRKL 418 (504)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHhccc----h--HHHHh--hhcccccHHHHHHHHHHH
Confidence 88899999999999999999887542221 22334444443333322 1 22222 122333445566666666
Q ss_pred hhCCCCCc
Q 038190 433 PRYGPEPN 440 (531)
Q Consensus 433 ~~~g~~p~ 440 (531)
-.. ..||
T Consensus 419 Aqk-WHPD 425 (504)
T KOG0624|consen 419 AQK-WHPD 425 (504)
T ss_pred HHh-cCCc
Confidence 543 3454
No 106
>PF12854 PPR_1: PPR repeat
Probab=98.71 E-value=2.4e-08 Score=56.55 Aligned_cols=32 Identities=44% Similarity=0.928 Sum_probs=16.6
Q ss_pred CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 038190 436 GPEPNVVTYTVMICGLCIEGGIEKAYDLLPDM 467 (531)
Q Consensus 436 g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 467 (531)
|+.||..+|+.||.+|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 44555555555555555555555555555444
No 107
>PF12854 PPR_1: PPR repeat
Probab=98.70 E-value=2.8e-08 Score=56.24 Aligned_cols=33 Identities=39% Similarity=0.762 Sum_probs=31.3
Q ss_pred CCCCCHHHHHHHHHHHHcCCChHHHHHHHHHhh
Q 038190 401 KFELDLTVFNCLVDGLCKSWRLRSAWELFKKLP 433 (531)
Q Consensus 401 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 433 (531)
|+.||..+|++||.+||+.|++++|.++|++|.
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 678899999999999999999999999999984
No 108
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.70 E-value=8.5e-06 Score=71.90 Aligned_cols=187 Identities=14% Similarity=0.008 Sum_probs=130.8
Q ss_pred CCHhhHHHHHHHHhcCCCHHHHHHHHHHHHhCCCC-C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCH--HHH
Q 038190 277 PDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGII-P-DVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDT--SSY 352 (531)
Q Consensus 277 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~--~~~ 352 (531)
.....+..+...+...|+++.|...|+++...... | ....+..+..++.+.|++++|...++++.+....... ..+
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 110 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAY 110 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHH
Confidence 45567778888899999999999999998876311 1 1246677888999999999999999999886433121 134
Q ss_pred HHHHHHHHhc--------CCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHH
Q 038190 353 NTLINSYSKI--------EKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRS 424 (531)
Q Consensus 353 ~~li~~~~~~--------~~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 424 (531)
..+..++... |++++|.+.|+.+.+. .|+......+......+... .......+...|.+.|++++
T Consensus 111 ~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~~~~~~~----~~~~~~~~a~~~~~~g~~~~ 184 (235)
T TIGR03302 111 YLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRMDYLRNR----LAGKELYVARFYLKRGAYVA 184 (235)
T ss_pred HHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHHHHHHHH----HHHHHHHHHHHHHHcCChHH
Confidence 4555555544 7788999999988764 34433333333322222210 01122356778999999999
Q ss_pred HHHHHHHhhhCCC-CC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 038190 425 AWELFKKLPRYGP-EP-NVVTYTVMICGLCIEGGIEKAYDLLPDMEE 469 (531)
Q Consensus 425 A~~~~~~~~~~g~-~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 469 (531)
|...++...+... .| ....+..+..++...|++++|..+++.+..
T Consensus 185 A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~ 231 (235)
T TIGR03302 185 AINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGA 231 (235)
T ss_pred HHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 9999999987421 12 356888999999999999999888876543
No 109
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.68 E-value=7.1e-05 Score=74.56 Aligned_cols=390 Identities=11% Similarity=0.026 Sum_probs=208.9
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCcchHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHH
Q 038190 101 KYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLF 180 (531)
Q Consensus 101 ~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 180 (531)
.+...++..|-+..+.. +-=...|..|...|+..-+...|.+.|+.+.+.... +...+..+.+.|++..+++.|..+.
T Consensus 472 K~~~~al~ali~alrld-~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDat-daeaaaa~adtyae~~~we~a~~I~ 549 (1238)
T KOG1127|consen 472 KNSALALHALIRALRLD-VSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDAT-DAEAAAASADTYAEESTWEEAFEIC 549 (1238)
T ss_pred hhHHHHHHHHHHHHhcc-cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCch-hhhhHHHHHHHhhccccHHHHHHHH
Confidence 34777777777776553 222457999999999888999999999999887533 6678888889999988888888774
Q ss_pred HHHHHc-------------C---------------------CCCCCCCcHHhHHHHHHHHHhcCChhHHHHHHHHHhhCC
Q 038190 181 TKFVAF-------------D---------------------CRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRG 226 (531)
Q Consensus 181 ~~~~~~-------------~---------------------~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g 226 (531)
-..-+. | ..| .|...|..++.+|.+.|.+..|.++|++....
T Consensus 550 l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dP---kD~n~W~gLGeAY~~sGry~~AlKvF~kAs~L- 625 (1238)
T KOG1127|consen 550 LRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDP---KDYNLWLGLGEAYPESGRYSHALKVFTKASLL- 625 (1238)
T ss_pred HHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCc---hhHHHHHHHHHHHHhcCceehHHHhhhhhHhc-
Confidence 332211 1 122 46778889999999999999999999888764
Q ss_pred CCCCHhhHHHH--HHHHHhcCChhhhhcchHHHHHHHHHHHhCCCCCCccccCCHhhHHHHHHHHhcCCCHHHHHHHHHH
Q 038190 227 IYPDAFVYNSL--IRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLD 304 (531)
Q Consensus 227 ~~p~~~~~~~l--i~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 304 (531)
.|+. +|... ...-+..|++.++...+...+..+..-.... .--..++-.+...+.-.|-..++.++++.
T Consensus 626 -rP~s-~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q-------~gLaE~~ir~akd~~~~gf~~kavd~~ek 696 (1238)
T KOG1127|consen 626 -RPLS-KYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQ-------NGLAESVIRDAKDSAITGFQKKAVDFFEK 696 (1238)
T ss_pred -CcHh-HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhh-------hhHHHHHHHHHHHHHHHHHhhhhhHHHHH
Confidence 3332 23222 2234556777777775555444433322211 11122233333333333333333333333
Q ss_pred HH-------hCCCCCCHHHHHHHHHHHHhcCCHH------HHHHHHH-HHHhcCCCC--------------------CHH
Q 038190 305 MK-------SRGIIPDVVVYSSLIDGYCLMGRID------DARKLFV-SIESEGCIP--------------------DTS 350 (531)
Q Consensus 305 ~~-------~~~~~~~~~~~~~ll~~~~~~g~~~------~a~~~~~-~~~~~g~~p--------------------~~~ 350 (531)
-. ......+...|-.+-++|.-.-..+ ....+|. ++...+.-| +..
T Consensus 697 sie~f~~~l~h~~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~ 776 (1238)
T KOG1127|consen 697 SIESFIVSLIHSLQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMY 776 (1238)
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccc
Confidence 22 1111112222222222111000000 0001111 111111111 122
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHH
Q 038190 351 SYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFK 430 (531)
Q Consensus 351 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 430 (531)
+|..++..| ++.....+- +..+...|+..++..++..- .+..+|+.|.-. ..-|++.-|.-.|-
T Consensus 777 ~WyNLGiny------------lr~f~~l~e--t~~~~~~Ai~c~KkaV~L~a-nn~~~WnaLGVl-sg~gnva~aQHCfI 840 (1238)
T KOG1127|consen 777 PWYNLGINY------------LRYFLLLGE--TMKDACTAIRCCKKAVSLCA-NNEGLWNALGVL-SGIGNVACAQHCFI 840 (1238)
T ss_pred hHHHHhHHH------------HHHHHHcCC--cchhHHHHHHHHHHHHHHhh-ccHHHHHHHHHh-hccchhhhhhhhhh
Confidence 222222222 111111110 01122344444444443221 166677777666 55567776766665
Q ss_pred HhhhCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-----------------HhhHHHHHHHHHHHH----HcCC
Q 038190 431 KLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK-----------------IRECLKAIELLHKMA----KRYV 489 (531)
Q Consensus 431 ~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----------------i~~~~~a~~~~~~~~----~~~~ 489 (531)
+-... .+....+|..+...+.+..+++-|...|...+.. +|+.-++..+|..-. ..|-
T Consensus 841 ks~~s-ep~~~~~W~NlgvL~l~n~d~E~A~~af~~~qSLdP~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gk 919 (1238)
T KOG1127|consen 841 KSRFS-EPTCHCQWLNLGVLVLENQDFEHAEPAFSSVQSLDPLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGK 919 (1238)
T ss_pred hhhhc-cccchhheeccceeEEecccHHHhhHHHHhhhhcCchhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccc
Confidence 55543 1335667777777788888888888888776654 365666666665522 2344
Q ss_pred CCCHHHHHHHHHHHhccCChhHHHhhHHHhhhc
Q 038190 490 KPDEITVSILEELLNKDENCHECMNLLPSFLSR 522 (531)
Q Consensus 490 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 522 (531)
-++..-|-+........|++++-+.-.++++.-
T Consensus 920 a~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki~sA 952 (1238)
T KOG1127|consen 920 AKKFQYWLCATEIHLQNGNIEESINTARKISSA 952 (1238)
T ss_pred cchhhHHHHHHHHHHhccchHHHHHHhhhhhhh
Confidence 456666666666677778877766666655543
No 110
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.67 E-value=2.2e-05 Score=80.64 Aligned_cols=227 Identities=11% Similarity=0.020 Sum_probs=164.0
Q ss_pred cHHhHHHHHHHHHhcCChhHHHHHHHHHhhC-CCCCCH---hhHHHHHHHHHhcCChhhhhcchHHHHHHHHHHHhCCCC
Q 038190 195 NVICYASIIDGLCKDGFVNKVRVLFLDMKGR-GIYPDA---FVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGE 270 (531)
Q Consensus 195 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~-g~~p~~---~~~~~li~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~ 270 (531)
+...|-..|......++.++|.+++++.... ++.-.. -.|.++++.-..-|.-+...+ +|++..+..
T Consensus 1457 SSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~k-------VFeRAcqyc-- 1527 (1710)
T KOG1070|consen 1457 SSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKK-------VFERACQYC-- 1527 (1710)
T ss_pred cchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHH-------HHHHHHHhc--
Confidence 5667888888888899999999999888754 222122 235555554444444444444 777766643
Q ss_pred CCccccCCHhhHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC-CH
Q 038190 271 LGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIP-DT 349 (531)
Q Consensus 271 ~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p-~~ 349 (531)
-....|..|...|.+.+.+++|.++++.|.+. +.-....|...+..+.+..+-+.|..++.+.++.=++- ..
T Consensus 1528 ------d~~~V~~~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv 1600 (1710)
T KOG1070|consen 1528 ------DAYTVHLKLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHV 1600 (1710)
T ss_pred ------chHHHHHHHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhH
Confidence 23456888899999999999999999999886 33467888888999999999999999999887752221 23
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHH
Q 038190 350 SSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELF 429 (531)
Q Consensus 350 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 429 (531)
....-.+..-.+.|+.+.+..+|+....... --...|+.+++.-.++|+.+.++.+|
T Consensus 1601 ~~IskfAqLEFk~GDaeRGRtlfEgll~ayP-----------------------KRtDlW~VYid~eik~~~~~~vR~lf 1657 (1710)
T KOG1070|consen 1601 EFISKFAQLEFKYGDAERGRTLFEGLLSAYP-----------------------KRTDLWSVYIDMEIKHGDIKYVRDLF 1657 (1710)
T ss_pred HHHHHHHHHHhhcCCchhhHHHHHHHHhhCc-----------------------cchhHHHHHHHHHHccCCHHHHHHHH
Confidence 3344455566788999999999988876432 14578999999999999999999999
Q ss_pred HHhhhCCCCCc--HHHHHHHHHHHHHcCCHHHH
Q 038190 430 KKLPRYGPEPN--VVTYTVMICGLCIEGGIEKA 460 (531)
Q Consensus 430 ~~~~~~g~~p~--~~~~~~l~~~~~~~g~~~~A 460 (531)
++....++.|. -..|...+..--.+|+-..+
T Consensus 1658 eRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~v 1690 (1710)
T KOG1070|consen 1658 ERVIELKLSIKKMKFFFKKWLEYEKSHGDEKNV 1690 (1710)
T ss_pred HHHHhcCCChhHhHHHHHHHHHHHHhcCchhhH
Confidence 99998877765 34566666655566765444
No 111
>PLN02789 farnesyltranstransferase
Probab=98.64 E-value=2.4e-05 Score=71.17 Aligned_cols=207 Identities=10% Similarity=0.015 Sum_probs=148.3
Q ss_pred CCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccC-CHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCc--chHH
Q 038190 66 VELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKK-YYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGV--SDAF 142 (531)
Q Consensus 66 g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~-~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~--~~a~ 142 (531)
++.++|+.+.+.+++.+|. +..+|+.--..+...| ++++++..++++.+.. +-+..+|+....++.+.|.. +.+.
T Consensus 51 e~serAL~lt~~aI~lnP~-~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~l~~l~~~~~~~el 128 (320)
T PLN02789 51 ERSPRALDLTADVIRLNPG-NYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWLAEKLGPDAANKEL 128 (320)
T ss_pred CCCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHHHHHcCchhhHHHH
Confidence 3889999999999997776 6678887777777777 6899999999999876 44666788776666666653 6788
Q ss_pred HHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCCCcHHhHHHHHHHHHhc---CCh----hHH
Q 038190 143 VALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKD---GFV----NKV 215 (531)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~----~~a 215 (531)
.+++.+++.... +..+|+....++...|+++++++.++++++.+.. +..+|+.....+.+. |.. ++.
T Consensus 129 ~~~~kal~~dpk-Ny~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-----N~sAW~~R~~vl~~~~~l~~~~~~~e~e 202 (320)
T PLN02789 129 EFTRKILSLDAK-NYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-----NNSAWNQRYFVITRSPLLGGLEAMRDSE 202 (320)
T ss_pred HHHHHHHHhCcc-cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-----chhHHHHHHHHHHhccccccccccHHHH
Confidence 899999988644 8889999999999999999999999999987433 677888777666554 222 456
Q ss_pred HHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChhhhhcchHHHHHHHHHHHhCCCCCCccccCCHhhHHHHHHHHhc
Q 038190 216 RVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCK 291 (531)
Q Consensus 216 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 291 (531)
+....++..... -+...|+.+...+...+.. +....++.+.+.+....+ +.+......++..|+.
T Consensus 203 l~y~~~aI~~~P-~N~SaW~Yl~~ll~~~~~~---l~~~~~~~~~~~~~~~~~-------~~s~~al~~l~d~~~~ 267 (320)
T PLN02789 203 LKYTIDAILANP-RNESPWRYLRGLFKDDKEA---LVSDPEVSSVCLEVLSKD-------SNHVFALSDLLDLLCE 267 (320)
T ss_pred HHHHHHHHHhCC-CCcCHHHHHHHHHhcCCcc---cccchhHHHHHHHhhccc-------CCcHHHHHHHHHHHHh
Confidence 666666665432 2677787777777653221 111222333665554433 3456677777777764
No 112
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.63 E-value=4.9e-05 Score=64.17 Aligned_cols=45 Identities=20% Similarity=0.279 Sum_probs=21.9
Q ss_pred ChHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 038190 421 RLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPD 466 (531)
Q Consensus 421 ~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 466 (531)
.+.+|.-+|++|.++ ..|++.+.+....++...|++++|..+++.
T Consensus 188 k~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~e 232 (299)
T KOG3081|consen 188 KIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEE 232 (299)
T ss_pred hhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHH
Confidence 344555555555442 344555555555555555555555444443
No 113
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.61 E-value=4.6e-06 Score=79.96 Aligned_cols=217 Identities=14% Similarity=0.061 Sum_probs=127.2
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCCCcHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHhhHHHH
Q 038190 158 VTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSL 237 (531)
Q Consensus 158 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l 237 (531)
..-..+...+...|-...|..+|+++. .|..++..|+..|+..+|..+..+..++ +||...|..+
T Consensus 399 q~q~~laell~slGitksAl~I~Erle-------------mw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~L 463 (777)
T KOG1128|consen 399 QLQRLLAELLLSLGITKSALVIFERLE-------------MWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLL 463 (777)
T ss_pred hHHHHHHHHHHHcchHHHHHHHHHhHH-------------HHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHh
Confidence 344456666777777777777776653 4677777777777777777776666652 4555555444
Q ss_pred HHHHHhcCChhhhhcchHHHHHHHHHHHhCCCCCCccccCCHhhHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHH
Q 038190 238 IRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVY 317 (531)
Q Consensus 238 i~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 317 (531)
.+... -...+++|+++.+..... +-..+.......+++.++.+.|+.-.+.+ +.-..+|
T Consensus 464 GDv~~-------d~s~yEkawElsn~~sar-------------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~w 522 (777)
T KOG1128|consen 464 GDVLH-------DPSLYEKAWELSNYISAR-------------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTW 522 (777)
T ss_pred hhhcc-------ChHHHHHHHHHhhhhhHH-------------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHH
Confidence 43332 334444455565543221 11112222233566777777766655442 2234555
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHH
Q 038190 318 SSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTL 397 (531)
Q Consensus 318 ~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 397 (531)
-.+-.++.+.++++.|.+.|..-....+. +...||.+-.+|.+.++-.+|...+.+..+.+..
T Consensus 523 f~~G~~ALqlek~q~av~aF~rcvtL~Pd-~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~---------------- 585 (777)
T KOG1128|consen 523 FGLGCAALQLEKEQAAVKAFHRCVTLEPD-NAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQ---------------- 585 (777)
T ss_pred HhccHHHHHHhhhHHHHHHHHHHhhcCCC-chhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCC----------------
Confidence 55555666667777777777666654322 4556777777777777777777777666665433
Q ss_pred HhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHhhh
Q 038190 398 HNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPR 434 (531)
Q Consensus 398 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 434 (531)
+..+|...+....+.|.+++|.+.+.++.+
T Consensus 586 -------~w~iWENymlvsvdvge~eda~~A~~rll~ 615 (777)
T KOG1128|consen 586 -------HWQIWENYMLVSVDVGEFEDAIKAYHRLLD 615 (777)
T ss_pred -------CCeeeechhhhhhhcccHHHHHHHHHHHHH
Confidence 334566666666677777777777776654
No 114
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.60 E-value=4.6e-05 Score=78.49 Aligned_cols=230 Identities=12% Similarity=0.007 Sum_probs=138.4
Q ss_pred HhhHHHHHHHHHccCCcchHHHHHHHHHHC-CCCC---ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCCCcHH
Q 038190 122 FVSLNILMNCFCKMIGVSDAFVALGRILRK-VFSP---DVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVI 197 (531)
Q Consensus 122 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-~~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 197 (531)
...|-..+....+.++.+.|..+.++++.. ++.- -...|.++++.-...|.-+...++|++..+.- + .-.
T Consensus 1458 Si~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc-d-----~~~ 1531 (1710)
T KOG1070|consen 1458 SILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC-D-----AYT 1531 (1710)
T ss_pred chHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc-c-----hHH
Confidence 345666666666666666666666666542 1111 12356666666666666666677777766531 1 234
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChhhhhcchHHHHHHHHHHHhCCCCCCccccC
Q 038190 198 CYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHP 277 (531)
Q Consensus 198 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~ 277 (531)
.|..|...|.+.+.+++|.++|+.|.++ +.-....|...+..+.+..+-+.|...+.+|++.+.. .-
T Consensus 1532 V~~~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk------------~e 1598 (1710)
T KOG1070|consen 1532 VHLKLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPK------------QE 1598 (1710)
T ss_pred HHHHHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcch------------hh
Confidence 5666777777777777777777777654 2235566777777777776666666633333332111 00
Q ss_pred CHhhHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCH--HHHHHH
Q 038190 278 DVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDT--SSYNTL 355 (531)
Q Consensus 278 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~--~~~~~l 355 (531)
.+....-.+..-.+.|+.+.+..+|+...... +--...|+..+++-.+.|+.+.++.+|+++...++.|.. ..|...
T Consensus 1599 Hv~~IskfAqLEFk~GDaeRGRtlfEgll~ay-PKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkw 1677 (1710)
T KOG1070|consen 1599 HVEFISKFAQLEFKYGDAERGRTLFEGLLSAY-PKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKW 1677 (1710)
T ss_pred hHHHHHHHHHHHhhcCCchhhHHHHHHHHhhC-ccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHH
Confidence 12233344445556777888888887777652 335667888888888888888888888888877766543 345555
Q ss_pred HHHHHhcCCHHHHHHH
Q 038190 356 INSYSKIEKVEEALSL 371 (531)
Q Consensus 356 i~~~~~~~~~~~a~~~ 371 (531)
+..--+.|+-+.+..+
T Consensus 1678 LeyEk~~Gde~~vE~V 1693 (1710)
T KOG1070|consen 1678 LEYEKSHGDEKNVEYV 1693 (1710)
T ss_pred HHHHHhcCchhhHHHH
Confidence 6555555655444333
No 115
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.59 E-value=5e-05 Score=77.23 Aligned_cols=268 Identities=10% Similarity=0.037 Sum_probs=175.0
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCCCcHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHhhHH
Q 038190 156 DVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYN 235 (531)
Q Consensus 156 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~ 235 (531)
+...+..|+..+...+++++|.++.+..... .|+ ....|-.+...+...++...+..+ .+... .+...-|.
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~--~P~---~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~--~~~~~~~~ 100 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLKE--HKK---SISALYISGILSLSRRPLNDSNLL--NLIDS--FSQNLKWA 100 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCc---ceehHHHHHHHHHhhcchhhhhhh--hhhhh--cccccchh
Confidence 4567778888888888888888888866664 332 333444444466666665555544 22211 11111122
Q ss_pred HHHHHHHhcCChhhhhcchHHHHHHHHHHHhCCCCCCccccCCHhhHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHH
Q 038190 236 SLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVV 315 (531)
Q Consensus 236 ~li~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 315 (531)
.+- . +...+...+ -+..++..+..+|-+.|+.++|..+|+++.+.. +-|+.
T Consensus 101 ~ve-------------~-------~~~~i~~~~--------~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~ 151 (906)
T PRK14720 101 IVE-------------H-------ICDKILLYG--------ENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPE 151 (906)
T ss_pred HHH-------------H-------HHHHHHhhh--------hhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHH
Confidence 111 1 222222222 234467778889999999999999999998886 44788
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHH
Q 038190 316 VYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFR 395 (531)
Q Consensus 316 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~ 395 (531)
+.|.+...|... ++++|..++.+.... |...+++..+.++|.++..... .+.+.-..+.+
T Consensus 152 aLNn~AY~~ae~-dL~KA~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~~~----~d~d~f~~i~~ 211 (906)
T PRK14720 152 IVKKLATSYEEE-DKEKAITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHYNS----DDFDFFLRIER 211 (906)
T ss_pred HHHHHHHHHHHh-hHHHHHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhcCc----ccchHHHHHHH
Confidence 888888888888 999998888777654 6666788888888888877432 24455556666
Q ss_pred HHHhC-CCCCCHHHHHHHHHHHHcCCChHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--H-
Q 038190 396 TLHNT-KFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK--I- 471 (531)
Q Consensus 396 ~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--i- 471 (531)
.+... +..--..++-.+-..|...++++++..+++.+.+.. +-|.....-++.+|. +.+.. -..|++..+. |
T Consensus 212 ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~-~~n~~a~~~l~~~y~--~kY~~-~~~~ee~l~~s~l~ 287 (906)
T PRK14720 212 KVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHD-NKNNKAREELIRFYK--EKYKD-HSLLEDYLKMSDIG 287 (906)
T ss_pred HHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcC-CcchhhHHHHHHHHH--HHccC-cchHHHHHHHhccc
Confidence 66543 444556677788888999999999999999999853 235666777887776 33322 3444444443 2
Q ss_pred ---hhHHHHHHHHHHHH
Q 038190 472 ---RECLKAIELLHKMA 485 (531)
Q Consensus 472 ---~~~~~a~~~~~~~~ 485 (531)
..+..++.-|+...
T Consensus 288 ~~~~~~~~~i~~fek~i 304 (906)
T PRK14720 288 NNRKPVKDCIADFEKNI 304 (906)
T ss_pred cCCccHHHHHHHHHHHe
Confidence 34456666666554
No 116
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.58 E-value=3.5e-06 Score=70.94 Aligned_cols=149 Identities=9% Similarity=0.037 Sum_probs=88.3
Q ss_pred CHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCcchHHHHHH
Q 038190 67 ELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALG 146 (531)
Q Consensus 67 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 146 (531)
+-+.+..+........++ +....+..+....+.|++..|+..+.+..... ++|..+|+.+.-+|.+.|+++.|...|.
T Consensus 81 ~a~~~l~~~~~~~~~~~~-d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~Gr~~~Ar~ay~ 158 (257)
T COG5010 81 DADSSLAVLQKSAIAYPK-DRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQLGRFDEARRAYR 158 (257)
T ss_pred cccchHHHHhhhhccCcc-cHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHccChhHHHHHHH
Confidence 344444444443322222 44444556666666677777777776666554 5666677777777777777777777776
Q ss_pred HHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCCCcHHhHHHHHHHHHhcCChhHHHHHHHHHh
Q 038190 147 RILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMK 223 (531)
Q Consensus 147 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 223 (531)
+..+.-+. +....|.+.-.|.-.|+.+.|..++......+. .|..+-..+.......|++++|.++...-.
T Consensus 159 qAl~L~~~-~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~-----ad~~v~~NLAl~~~~~g~~~~A~~i~~~e~ 229 (257)
T COG5010 159 QALELAPN-EPSIANNLGMSLLLRGDLEDAETLLLPAYLSPA-----ADSRVRQNLALVVGLQGDFREAEDIAVQEL 229 (257)
T ss_pred HHHHhccC-CchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCC-----CchHHHHHHHHHHhhcCChHHHHhhccccc
Confidence 66665332 445566666666666777777776666655321 155556666666666677776666654433
No 117
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.57 E-value=0.00039 Score=64.18 Aligned_cols=185 Identities=14% Similarity=0.102 Sum_probs=138.1
Q ss_pred ccCCHhhHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHH
Q 038190 275 CHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNT 354 (531)
Q Consensus 275 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~ 354 (531)
..|+...+...+.+.........+..++.+..+. .-...-|..-+ .+...|++++|+..++.+...-+. |...+..
T Consensus 270 d~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~--~~~aa~YG~A~-~~~~~~~~d~A~~~l~~L~~~~P~-N~~~~~~ 345 (484)
T COG4783 270 DSPDFQLARARIRAKYEALPNQQAADLLAKRSKR--GGLAAQYGRAL-QTYLAGQYDEALKLLQPLIAAQPD-NPYYLEL 345 (484)
T ss_pred CCccHHHHHHHHHHHhccccccchHHHHHHHhCc--cchHHHHHHHH-HHHHhcccchHHHHHHHHHHhCCC-CHHHHHH
Confidence 3456666666666554444333333333332221 11223333333 355679999999999999887432 5666677
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHhhh
Q 038190 355 LINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPR 434 (531)
Q Consensus 355 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 434 (531)
..+.+.+.|+.++|.+.++++... .|+ .....-.+..+|.+.|++.+|..++++...
T Consensus 346 ~~~i~~~~nk~~~A~e~~~kal~l--~P~---------------------~~~l~~~~a~all~~g~~~eai~~L~~~~~ 402 (484)
T COG4783 346 AGDILLEANKAKEAIERLKKALAL--DPN---------------------SPLLQLNLAQALLKGGKPQEAIRILNRYLF 402 (484)
T ss_pred HHHHHHHcCChHHHHHHHHHHHhc--CCC---------------------ccHHHHHHHHHHHhcCChHHHHHHHHHHhh
Confidence 788999999999999999999874 232 356778899999999999999999999987
Q ss_pred CCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHc
Q 038190 435 YGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECLKAIELLHKMAKR 487 (531)
Q Consensus 435 ~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~i~~~~~a~~~~~~~~~~ 487 (531)
. .+-|+..|..|..+|...|+..+|.....+....-|++++|+..+....+.
T Consensus 403 ~-~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~~~G~~~~A~~~l~~A~~~ 454 (484)
T COG4783 403 N-DPEDPNGWDLLAQAYAELGNRAEALLARAEGYALAGRLEQAIIFLMRASQQ 454 (484)
T ss_pred c-CCCCchHHHHHHHHHHHhCchHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh
Confidence 5 355899999999999999999999999988888889999999999988864
No 118
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.56 E-value=5.3e-06 Score=70.13 Aligned_cols=119 Identities=10% Similarity=0.023 Sum_probs=87.0
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCcchHHHHHHHHHHCCCCCChhhHHHHHHHH-HhcCC--hHHH
Q 038190 100 KKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGL-CMQGK--FTEA 176 (531)
Q Consensus 100 ~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~-~~~g~--~~~a 176 (531)
.++.++++..++...+.. +.|...|..+...|...|+++.|...|++..+..+. +...+..+..++ ...|+ .++|
T Consensus 52 ~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~-~~~~~~~lA~aL~~~~g~~~~~~A 129 (198)
T PRK10370 52 QQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGE-NAELYAALATVLYYQAGQHMTPQT 129 (198)
T ss_pred chhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCCCCcHHH
Confidence 566677777777776665 567777888888888888888888888888777543 666777777653 56666 4788
Q ss_pred HHHHHHHHHcCCCCCCCCcHHhHHHHHHHHHhcCChhHHHHHHHHHhhC
Q 038190 177 SGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGR 225 (531)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 225 (531)
.+++++..+. .|+ +..++..+...+...|++++|...|+++.+.
T Consensus 130 ~~~l~~al~~--dP~---~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l 173 (198)
T PRK10370 130 REMIDKALAL--DAN---EVTALMLLASDAFMQADYAQAIELWQKVLDL 173 (198)
T ss_pred HHHHHHHHHh--CCC---ChhHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 8888888776 342 6677777888888888888888888887765
No 119
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.56 E-value=1.2e-05 Score=71.06 Aligned_cols=157 Identities=14% Similarity=0.123 Sum_probs=108.4
Q ss_pred cCCHHHHHHHHHHHHHcCCC-C-ChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHh---hHHHHHHHHHcc----
Q 038190 65 EVELNDALCFFNYMIHMQPT-P-FMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFV---SLNILMNCFCKM---- 135 (531)
Q Consensus 65 ~g~~~~A~~~~~~~~~~~~~-~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~---~~~~li~~~~~~---- 135 (531)
.|++++|...|+++....|. | ...++..+..++.+.|++++|+..++++.+.. +.+.. ++..+..++.+.
T Consensus 46 ~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~a~~~~g~~~~~~~~~~ 124 (235)
T TIGR03302 46 SGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLH-PNHPDADYAYYLRGLSNYNQIDRV 124 (235)
T ss_pred cCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC-cCCCchHHHHHHHHHHHHHhcccc
Confidence 34899999999999886654 1 12467778888999999999999999998764 21222 455555555544
Q ss_pred ----CCcchHHHHHHHHHHCCCCCChhhHH-----------------HHHHHHHhcCChHHHHHHHHHHHHcCCCCCCCC
Q 038190 136 ----IGVSDAFVALGRILRKVFSPDVVTLG-----------------CLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIP 194 (531)
Q Consensus 136 ----g~~~~a~~~~~~~~~~~~~~~~~~~~-----------------~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 194 (531)
|+++.|...++.+.+..+. +...+. .+...|.+.|++++|+..+++.... .|+...
T Consensus 125 ~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~p~~~~ 201 (235)
T TIGR03302 125 DRDQTAAREAFEAFQELIRRYPN-SEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAINRFETVVEN--YPDTPA 201 (235)
T ss_pred cCCHHHHHHHHHHHHHHHHHCCC-ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH--CCCCcc
Confidence 6788899999998876433 222221 3345567778888888888887765 222222
Q ss_pred cHHhHHHHHHHHHhcCChhHHHHHHHHHhhC
Q 038190 195 NVICYASIIDGLCKDGFVNKVRVLFLDMKGR 225 (531)
Q Consensus 195 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 225 (531)
....+..+..++...|++++|..+++.+...
T Consensus 202 ~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 202 TEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 4567778888888888888888887777654
No 120
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.54 E-value=0.00033 Score=59.36 Aligned_cols=250 Identities=10% Similarity=0.032 Sum_probs=139.7
Q ss_pred HHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCcchHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCh
Q 038190 94 LGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKF 173 (531)
Q Consensus 94 i~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 173 (531)
++-+.-.|++..++..-...... +-+...-..+-++|...|.+.....- ++. |-.+.......+...+..-++.
T Consensus 15 iRn~fY~Gnyq~~ine~~~~~~~--~~~~e~d~y~~raylAlg~~~~~~~e---I~~-~~~~~lqAvr~~a~~~~~e~~~ 88 (299)
T KOG3081|consen 15 IRNYFYLGNYQQCINEAEKFSSS--KTDVELDVYMYRAYLALGQYQIVISE---IKE-GKATPLQAVRLLAEYLELESNK 88 (299)
T ss_pred HHHHHHhhHHHHHHHHHHhhccc--cchhHHHHHHHHHHHHcccccccccc---ccc-ccCChHHHHHHHHHHhhCcchh
Confidence 34455567777777666655433 13444455556677776666544322 111 1133333333333333334444
Q ss_pred HHHHH-HHHHHHHcCCCCCCCCcHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChhhhhc
Q 038190 174 TEASG-LFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKG 252 (531)
Q Consensus 174 ~~a~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~ 252 (531)
+.-+. +.+.+...... .+......-...|+..|++++|++...... +......=+..+.+..+.+-|.+
T Consensus 89 ~~~~~~l~E~~a~~~~~----sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~ 158 (299)
T KOG3081|consen 89 KSILASLYELVADSTDG----SNLIDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEK 158 (299)
T ss_pred HHHHHHHHHHHHhhccc----hhHHHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHH
Confidence 44433 33333332111 132333334456778888888888776622 22222222333445555555555
Q ss_pred chHHHHHHHHHHHhCCCCCCccccCCHhhHHHHHHHHhc----CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 038190 253 NTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCK----DVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMG 328 (531)
Q Consensus 253 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g 328 (531)
.++.|.+.+ +..|.+-|..++.+ .+.+..|.-+|++|-++ ..|+..+.+....++...|
T Consensus 159 -------~lk~mq~id---------ed~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~ 221 (299)
T KOG3081|consen 159 -------ELKKMQQID---------EDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLG 221 (299)
T ss_pred -------HHHHHHccc---------hHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhc
Confidence 777777654 45566666665543 45677888888888764 5778888888888888888
Q ss_pred CHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHH-HHHHHHHHh
Q 038190 329 RIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEA-LSLYGEMIS 377 (531)
Q Consensus 329 ~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~~~~~~a-~~~~~~~~~ 377 (531)
++++|..+++..+..... ++.+...++.+-...|...++ .+.+..++.
T Consensus 222 ~~eeAe~lL~eaL~kd~~-dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~ 270 (299)
T KOG3081|consen 222 RYEEAESLLEEALDKDAK-DPETLANLIVLALHLGKDAEVTERNLSQLKL 270 (299)
T ss_pred CHHHHHHHHHHHHhccCC-CHHHHHHHHHHHHHhCCChHHHHHHHHHHHh
Confidence 888888888888876544 555555555544455554333 344444443
No 121
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.52 E-value=7.2e-05 Score=76.14 Aligned_cols=254 Identities=12% Similarity=0.080 Sum_probs=134.0
Q ss_pred ChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCH-hhHHHHHHHHHccCCcchHHHH------------------HH
Q 038190 86 FMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDF-VSLNILMNCFCKMIGVSDAFVA------------------LG 146 (531)
Q Consensus 86 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~-~~~~~li~~~~~~g~~~~a~~~------------------~~ 146 (531)
+...|..|+..+...+++++|.++.+...+. .|+. ..|..+...+.+.++.+.+..+ +.
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~--~P~~i~~yy~~G~l~~q~~~~~~~~lv~~l~~~~~~~~~~~ve~~~~ 107 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLKE--HKKSISALYISGILSLSRRPLNDSNLLNLIDSFSQNLKWAIVEHICD 107 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCcceehHHHHHHHHHhhcchhhhhhhhhhhhcccccchhHHHHHHH
Confidence 5667888888888888888888888876665 3433 3333333455555555444433 11
Q ss_pred HHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCCCcHHhHHHHHHHHHhcCChhHHHHHHHHHhhCC
Q 038190 147 RILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRG 226 (531)
Q Consensus 147 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g 226 (531)
.+... .-+..++..+..+|-+.|+.++|..+|+++.+.+ |. |..+.|.+...|+.. ++++|.+++.+....
T Consensus 108 ~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D--~~---n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~- 178 (906)
T PRK14720 108 KILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKAD--RD---NPEIVKKLATSYEEE-DKEKAITYLKKAIYR- 178 (906)
T ss_pred HHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC--cc---cHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH-
Confidence 11111 1122344445555555555555555555555542 31 555555555555555 555555555554432
Q ss_pred CCCCHhhHHHHHHHHHhcCChhhhhcchHHHHHHHHHHHhCCCCCCccccCCHhhHHHHHHHHhcCCCHHHHHHHHHHHH
Q 038190 227 IYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMK 306 (531)
Q Consensus 227 ~~p~~~~~~~li~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 306 (531)
+....++..+.. +|..+.... | .+++.-..+.+.+.
T Consensus 179 --------------~i~~kq~~~~~e-------~W~k~~~~~--------~---------------~d~d~f~~i~~ki~ 214 (906)
T PRK14720 179 --------------FIKKKQYVGIEE-------IWSKLVHYN--------S---------------DDFDFFLRIERKVL 214 (906)
T ss_pred --------------HHhhhcchHHHH-------HHHHHHhcC--------c---------------ccchHHHHHHHHHH
Confidence 222222222222 444444332 1 12222233333333
Q ss_pred hC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-hCCCCCCc
Q 038190 307 SR-GIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMI-SMGVRPDN 384 (531)
Q Consensus 307 ~~-~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~-~~~~~~~~ 384 (531)
.. |..--..++-.+-..|-...+++++..+++.+++.... |.....-++.+|.. .+.. ...|++.. -.|+.-..
T Consensus 215 ~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~-n~~a~~~l~~~y~~--kY~~-~~~~ee~l~~s~l~~~~ 290 (906)
T PRK14720 215 GHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNK-NNKAREELIRFYKE--KYKD-HSLLEDYLKMSDIGNNR 290 (906)
T ss_pred hhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCc-chhhHHHHHHHHHH--HccC-cchHHHHHHHhccccCC
Confidence 33 22233445556666777788888888888888887544 66666777777752 2222 22233222 23444444
Q ss_pred ccHHHHHHHHHHHH
Q 038190 385 SCILEAAELFRTLH 398 (531)
Q Consensus 385 ~~~~~a~~~~~~~~ 398 (531)
..+..++..|+...
T Consensus 291 ~~~~~~i~~fek~i 304 (906)
T PRK14720 291 KPVKDCIADFEKNI 304 (906)
T ss_pred ccHHHHHHHHHHHe
Confidence 55666666666543
No 122
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.51 E-value=0.00039 Score=67.22 Aligned_cols=100 Identities=8% Similarity=0.018 Sum_probs=51.4
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhHHHHHHHH-HHHHHc
Q 038190 409 FNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECLKAIELL-HKMAKR 487 (531)
Q Consensus 409 ~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~i~~~~~a~~~~-~~~~~~ 487 (531)
|+.-.+.-...|++..|..++-+.. +|+. .+.-|...+-|.+|+++-+...-+ ......+-+ ++..+.
T Consensus 1082 ~tgqar~aiee~d~~kae~fllran----kp~i-----~l~yf~e~~lw~dalri~kdylp~--q~a~iqeeyek~~~k~ 1150 (1636)
T KOG3616|consen 1082 LTGQARGAIEEGDFLKAEGFLLRAN----KPDI-----ALNYFIEAELWPDALRIAKDYLPH--QAAAIQEEYEKEALKK 1150 (1636)
T ss_pred HhhhhhccccccchhhhhhheeecC----CCch-----HHHHHHHhccChHHHHHHHhhChh--HHHHHHHHHHHHHHhc
Confidence 3444444455666666666654444 3442 344555667777777776654332 000011111 122333
Q ss_pred CCCCCHHHHHHHHHHHhccCChhHHHhhHHHhh
Q 038190 488 YVKPDEITVSILEELLNKDENCHECMNLLPSFL 520 (531)
Q Consensus 488 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 520 (531)
|-+ ....+..-.+-...+|+|.+|...+-++.
T Consensus 1151 gar-gvd~fvaqak~weq~gd~rkav~~~lkin 1182 (1636)
T KOG3616|consen 1151 GAR-GVDGFVAQAKEWEQAGDWRKAVDALLKIN 1182 (1636)
T ss_pred ccc-ccHHHHHHHHHHHhcccHHHHHHHHhhhc
Confidence 432 33445555566667777777777766653
No 123
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.50 E-value=8.5e-06 Score=65.08 Aligned_cols=109 Identities=12% Similarity=-0.053 Sum_probs=85.8
Q ss_pred HHHHHHHHHcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCcchHHHHHHHHHHC
Q 038190 72 LCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRK 151 (531)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 151 (531)
..+|++..+.+ |+ .+..+..++.+.|++++|...|.+..... +.+..+|..+..++.+.|++++|...|+.+...
T Consensus 13 ~~~~~~al~~~--p~--~~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l 87 (144)
T PRK15359 13 EDILKQLLSVD--PE--TVYASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALML 87 (144)
T ss_pred HHHHHHHHHcC--HH--HHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 45666666533 33 24556777888899999999999888775 557778888888888899999999999998887
Q ss_pred CCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 038190 152 VFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAF 186 (531)
Q Consensus 152 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 186 (531)
.+ .+...+..+..++...|++++|+..|+.....
T Consensus 88 ~p-~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~ 121 (144)
T PRK15359 88 DA-SHPEPVYQTGVCLKMMGEPGLAREAFQTAIKM 121 (144)
T ss_pred CC-CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 54 37778888888888899999999999888875
No 124
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.50 E-value=0.00019 Score=69.27 Aligned_cols=192 Identities=18% Similarity=0.125 Sum_probs=103.3
Q ss_pred HHHHHccCCcchHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCCCcHHhHHHHHHHHHh
Q 038190 129 MNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCK 208 (531)
Q Consensus 129 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 208 (531)
+.+......|.+|+.+++.+.... .-..-|..+...|+..|+++.|.++|.+. ..++..|.+|.+
T Consensus 739 ieaai~akew~kai~ildniqdqk--~~s~yy~~iadhyan~~dfe~ae~lf~e~-------------~~~~dai~my~k 803 (1636)
T KOG3616|consen 739 IEAAIGAKEWKKAISILDNIQDQK--TASGYYGEIADHYANKGDFEIAEELFTEA-------------DLFKDAIDMYGK 803 (1636)
T ss_pred HHHHhhhhhhhhhHhHHHHhhhhc--cccccchHHHHHhccchhHHHHHHHHHhc-------------chhHHHHHHHhc
Confidence 334445566777777777666542 22335566667777777777777777543 235566777777
Q ss_pred cCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChhhhhcchHHHHHHHHHHHhCCCCCCccccCCHhhHHHHHHH
Q 038190 209 DGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINS 288 (531)
Q Consensus 209 ~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ 288 (531)
.|+|+.|.++-.+... .......|.+-..-.-+.|++.+|.+ ++-.+. .|+ ..|.+
T Consensus 804 ~~kw~da~kla~e~~~--~e~t~~~yiakaedldehgkf~eaeq-------lyiti~----------~p~-----~aiqm 859 (1636)
T KOG3616|consen 804 AGKWEDAFKLAEECHG--PEATISLYIAKAEDLDEHGKFAEAEQ-------LYITIG----------EPD-----KAIQM 859 (1636)
T ss_pred cccHHHHHHHHHHhcC--chhHHHHHHHhHHhHHhhcchhhhhh-------eeEEcc----------Cch-----HHHHH
Confidence 7777777776655442 22334444444444555566555555 332211 122 24556
Q ss_pred HhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 038190 289 LCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEA 368 (531)
Q Consensus 289 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~~~~~~a 368 (531)
|-+.|..+..+++.++-... .-..|...+..-|-..|++..|...|-+..+ |.+.++.|-..+-|++|
T Consensus 860 ydk~~~~ddmirlv~k~h~d---~l~dt~~~f~~e~e~~g~lkaae~~flea~d---------~kaavnmyk~s~lw~da 927 (1636)
T KOG3616|consen 860 YDKHGLDDDMIRLVEKHHGD---HLHDTHKHFAKELEAEGDLKAAEEHFLEAGD---------FKAAVNMYKASELWEDA 927 (1636)
T ss_pred HHhhCcchHHHHHHHHhChh---hhhHHHHHHHHHHHhccChhHHHHHHHhhhh---------HHHHHHHhhhhhhHHHH
Confidence 66666666666555432211 1123444455556666666666665543322 33444455555555555
Q ss_pred HHH
Q 038190 369 LSL 371 (531)
Q Consensus 369 ~~~ 371 (531)
.++
T Consensus 928 yri 930 (1636)
T KOG3616|consen 928 YRI 930 (1636)
T ss_pred HHH
Confidence 443
No 125
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.47 E-value=0.00012 Score=73.87 Aligned_cols=132 Identities=14% Similarity=0.125 Sum_probs=76.5
Q ss_pred CCHhhHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHH
Q 038190 277 PDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPD-VVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTL 355 (531)
Q Consensus 277 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~l 355 (531)
.+...+-.|.....+.|.+++|..+++...+. .|+ ......+..++.+.+++++|...+++.....+. +......+
T Consensus 84 ~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~--~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~-~~~~~~~~ 160 (694)
T PRK15179 84 HTELFQVLVARALEAAHRSDEGLAVWRGIHQR--FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSS-SAREILLE 160 (694)
T ss_pred ccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCC-CHHHHHHH
Confidence 34555566666666666666666666666554 333 344455555666666666666666666655433 44444555
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHhhh
Q 038190 356 INSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPR 434 (531)
Q Consensus 356 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 434 (531)
..++.+.|++++|..+|+++...+ |+ +..++..+..++...|+.++|...|++..+
T Consensus 161 a~~l~~~g~~~~A~~~y~~~~~~~--p~---------------------~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~ 216 (694)
T PRK15179 161 AKSWDEIGQSEQADACFERLSRQH--PE---------------------FENGYVGWAQSLTRRGALWRARDVLQAGLD 216 (694)
T ss_pred HHHHHHhcchHHHHHHHHHHHhcC--CC---------------------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 556666666666666666665522 11 455666666666666666666666666655
No 126
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.45 E-value=1e-05 Score=68.47 Aligned_cols=119 Identities=13% Similarity=0.074 Sum_probs=102.1
Q ss_pred cCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHH-HccCC--cchH
Q 038190 65 EVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCF-CKMIG--VSDA 141 (531)
Q Consensus 65 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~-~~~g~--~~~a 141 (531)
.++.+++...++...+.+|. +...|..+...|...|+++.|+..|++..+.. +.+...+..+..++ ...|+ .++|
T Consensus 52 ~~~~~~~i~~l~~~L~~~P~-~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A 129 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANPQ-NSEQWALLGEYYLWRNDYDNALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQT 129 (198)
T ss_pred chhHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHH
Confidence 45788999999999888776 88899999999999999999999999998876 55777888888764 66676 5899
Q ss_pred HHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 038190 142 FVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAF 186 (531)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 186 (531)
..++++.++..+. +..++..+...+...|++++|+..|+++...
T Consensus 130 ~~~l~~al~~dP~-~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l 173 (198)
T PRK10370 130 REMIDKALALDAN-EVTALMLLASDAFMQADYAQAIELWQKVLDL 173 (198)
T ss_pred HHHHHHHHHhCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 9999999998655 7788888999999999999999999999876
No 127
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.45 E-value=0.00038 Score=64.25 Aligned_cols=122 Identities=12% Similarity=-0.026 Sum_probs=84.5
Q ss_pred HHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC-HHHHHHHHHHHHhcCC
Q 038190 286 INSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPD-TSSYNTLINSYSKIEK 364 (531)
Q Consensus 286 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~-~~~~~~li~~~~~~~~ 364 (531)
...+...|+++.|+..++.+.+. .+-|+..+....+.+.+.++.++|.+.++++.... |+ ...+-.+..+|.+.|+
T Consensus 313 A~~~~~~~~~d~A~~~l~~L~~~-~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~--P~~~~l~~~~a~all~~g~ 389 (484)
T COG4783 313 ALQTYLAGQYDEALKLLQPLIAA-QPDNPYYLELAGDILLEANKAKEAIERLKKALALD--PNSPLLQLNLAQALLKGGK 389 (484)
T ss_pred HHHHHHhcccchHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC--CCccHHHHHHHHHHHhcCC
Confidence 33445677778888888777765 33355566666677788888888888888877763 44 4555666777888888
Q ss_pred HHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHhh
Q 038190 365 VEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLP 433 (531)
Q Consensus 365 ~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 433 (531)
+.+|+.++++..... | -|+..|..|.++|...|+..+|.....++.
T Consensus 390 ~~eai~~L~~~~~~~--p---------------------~dp~~w~~LAqay~~~g~~~~a~~A~AE~~ 435 (484)
T COG4783 390 PQEAIRILNRYLFND--P---------------------EDPNGWDLLAQAYAELGNRAEALLARAEGY 435 (484)
T ss_pred hHHHHHHHHHHhhcC--C---------------------CCchHHHHHHHHHHHhCchHHHHHHHHHHH
Confidence 888888777776542 2 267778888888888777777776665544
No 128
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.44 E-value=5.6e-05 Score=63.88 Aligned_cols=158 Identities=13% Similarity=0.051 Sum_probs=93.9
Q ss_pred HHHHHHHHccCCcchHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCCCcHHhHHHHHHH
Q 038190 126 NILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDG 205 (531)
Q Consensus 126 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 205 (531)
..+-..+...|+-+....+........ .-+....+.++....+.|++..|+..|.+.... .| +|..+|+.+.-+
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~-~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l--~p---~d~~~~~~lgaa 143 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIAY-PKDRELLAAQGKNQIRNGNFGEAVSVLRKAARL--AP---TDWEAWNLLGAA 143 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhccC-cccHHHHHHHHHHHHHhcchHHHHHHHHHHhcc--CC---CChhhhhHHHHH
Confidence 445555556666666666655543321 234455556667777777777777777776654 34 366777777777
Q ss_pred HHhcCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChhhhhcchHHHHHHHHHHHhCCCCCCccccCCHhhHHHH
Q 038190 206 LCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSI 285 (531)
Q Consensus 206 ~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l 285 (531)
|.+.|+++.|..-|.+..+.... +...++.+.-.+.-.|+.+.|.. ++....... .-|...-..+
T Consensus 144 ldq~Gr~~~Ar~ay~qAl~L~~~-~p~~~nNlgms~~L~gd~~~A~~-------lll~a~l~~-------~ad~~v~~NL 208 (257)
T COG5010 144 LDQLGRFDEARRAYRQALELAPN-EPSIANNLGMSLLLRGDLEDAET-------LLLPAYLSP-------AADSRVRQNL 208 (257)
T ss_pred HHHccChhHHHHHHHHHHHhccC-CchhhhhHHHHHHHcCCHHHHHH-------HHHHHHhCC-------CCchHHHHHH
Confidence 77777777777777666654222 34445555555666666666666 555544443 2345555556
Q ss_pred HHHHhcCCCHHHHHHHHHH
Q 038190 286 INSLCKDVLVDKAKELFLD 304 (531)
Q Consensus 286 l~~~~~~~~~~~a~~~~~~ 304 (531)
.......|++++|..+...
T Consensus 209 Al~~~~~g~~~~A~~i~~~ 227 (257)
T COG5010 209 ALVVGLQGDFREAEDIAVQ 227 (257)
T ss_pred HHHHhhcCChHHHHhhccc
Confidence 6666666666666665543
No 129
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.44 E-value=1.6e-05 Score=76.41 Aligned_cols=212 Identities=12% Similarity=-0.017 Sum_probs=112.7
Q ss_pred HHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCcchHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCC
Q 038190 93 LLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGK 172 (531)
Q Consensus 93 li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 172 (531)
+...+...|-...|+.+++++. .|.-+|.+|+..|+..+|..+..+-++. +|+...|..+.+.....--
T Consensus 404 laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGDv~~d~s~ 472 (777)
T KOG1128|consen 404 LAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGDVLHDPSL 472 (777)
T ss_pred HHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhhhccChHH
Confidence 4444555556666666665543 4555566666666666666666655553 4555566655555555555
Q ss_pred hHHHHHHHHHHHHcCCCCCCCCcHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChhhhhc
Q 038190 173 FTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKG 252 (531)
Q Consensus 173 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~ 252 (531)
+++|.++++..... +-..+.....+.++++++.+.|+.-.+.. +....+|-..-.+..+.+++..+..
T Consensus 473 yEkawElsn~~sar-----------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~q~av~ 540 (777)
T KOG1128|consen 473 YEKAWELSNYISAR-----------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKEQAAVK 540 (777)
T ss_pred HHHHHHHhhhhhHH-----------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhhHHHHH
Confidence 55666655554321 11122222233566666666665544321 1133444444444445555554444
Q ss_pred chHHHHHHHHHHHhCCCCCCccccCCHhhHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 038190 253 NTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDD 332 (531)
Q Consensus 253 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~ 332 (531)
.|..-.... +-+...||++-.+|.+.++-.+|...+.+..+.+ .-+...|...+....+.|.+++
T Consensus 541 -------aF~rcvtL~-------Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~ed 605 (777)
T KOG1128|consen 541 -------AFHRCVTLE-------PDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFED 605 (777)
T ss_pred -------HHHHHhhcC-------CCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHH
Confidence 444444432 2234556666666666666666666666666655 2244445555555566666666
Q ss_pred HHHHHHHHHh
Q 038190 333 ARKLFVSIES 342 (531)
Q Consensus 333 a~~~~~~~~~ 342 (531)
|.+.+.++..
T Consensus 606 a~~A~~rll~ 615 (777)
T KOG1128|consen 606 AIKAYHRLLD 615 (777)
T ss_pred HHHHHHHHHH
Confidence 6666666543
No 130
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.42 E-value=0.0017 Score=60.82 Aligned_cols=367 Identities=13% Similarity=0.086 Sum_probs=216.7
Q ss_pred CHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcc-CCcch----H
Q 038190 67 ELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKM-IGVSD----A 141 (531)
Q Consensus 67 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~-g~~~~----a 141 (531)
.+++++..++++...-|. +...|..-|..-...++++....+|.+.+.. ..+...|..-+..-.+. |+... .
T Consensus 34 ~~~~~R~~YEq~~~~FP~-s~r~W~~yi~~El~skdfe~VEkLF~RCLvk--vLnlDLW~lYl~YVR~~~~~~~~~r~~m 110 (656)
T KOG1914|consen 34 PIDKVRETYEQLVNVFPS-SPRAWKLYIERELASKDFESVEKLFSRCLVK--VLNLDLWKLYLSYVRETKGKLFGYREKM 110 (656)
T ss_pred CHHHHHHHHHHHhccCCC-CcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--HhhHhHHHHHHHHHHHHccCcchHHHHH
Confidence 699999999999874444 5678999999999999999999999999876 35666777777654432 33333 2
Q ss_pred HHHHHHHH-HCCCCCC-hhhHHHHHHHH---------HhcCChHHHHHHHHHHHHcCCCCCCCCcHHhHHHH------HH
Q 038190 142 FVALGRIL-RKVFSPD-VVTLGCLIRGL---------CMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASI------ID 204 (531)
Q Consensus 142 ~~~~~~~~-~~~~~~~-~~~~~~li~~~---------~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l------~~ 204 (531)
.+.|+-.+ +.|+++- -..|+..+..+ ....+++...+++.++.. .|-.. =...|+-. |+
T Consensus 111 ~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~---tPm~n-lEkLW~DY~~fE~~IN 186 (656)
T KOG1914|consen 111 VQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALV---TPMHN-LEKLWKDYEAFEQEIN 186 (656)
T ss_pred HHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhc---Ccccc-HHHHHHHHHHHHHHHH
Confidence 23344333 3454332 23455544432 233355666677777664 22110 01122211 11
Q ss_pred HH-------HhcCChhHHHHHHHHHhh--CCCCCCHhh---------------HHHHHH---------------------
Q 038190 205 GL-------CKDGFVNKVRVLFLDMKG--RGIYPDAFV---------------YNSLIR--------------------- 239 (531)
Q Consensus 205 ~~-------~~~~~~~~a~~~~~~m~~--~g~~p~~~~---------------~~~li~--------------------- 239 (531)
.. -+...+..|.++++++.. +|+.....+ |-.+|.
T Consensus 187 ~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wEksNpL~t~~~~~~~~Rv~y 266 (656)
T KOG1914|consen 187 IITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWEKSNPLRTLDGTMLTRRVMY 266 (656)
T ss_pred HHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHHhcCCcccccccHHHHHHHH
Confidence 11 112334455555555432 232211111 222221
Q ss_pred ----------------------------HHHhcCChhhhhcchHHHHHHHHHHHhCCCCCCccccCCHhhHHHHHHHHhc
Q 038190 240 ----------------------------VYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCK 291 (531)
Q Consensus 240 ----------------------------~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 291 (531)
.+...|+..+|...-+++..+++.....- ..-+..+|..+...-..
T Consensus 267 ayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l------~~~~~~Ly~~~a~~eE~ 340 (656)
T KOG1914|consen 267 AYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGL------LKENKLLYFALADYEES 340 (656)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHH------HHHHHHHHHHHHhhHHH
Confidence 22233444444444444444444443322 12223333333221111
Q ss_pred C---CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC-CHHHHHHHHHHHHhcCCHHH
Q 038190 292 D---VLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIP-DTSSYNTLINSYSKIEKVEE 367 (531)
Q Consensus 292 ~---~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p-~~~~~~~li~~~~~~~~~~~ 367 (531)
. .+.+....++++....-..--+.+|..+|+...+..-+..|..+|.+..+.+..+ ++..++++++-||. ++.+-
T Consensus 341 ~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cs-kD~~~ 419 (656)
T KOG1914|consen 341 RYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCS-KDKET 419 (656)
T ss_pred hcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhc-CChhH
Confidence 1 1245555666666554322234567778888888888999999999999887776 67777888887765 67888
Q ss_pred HHHHHHHHHhCCCCCCcccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHhhhCCCCCc--HHHHH
Q 038190 368 ALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPN--VVTYT 445 (531)
Q Consensus 368 a~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~--~~~~~ 445 (531)
|.++|+--.+.- .-++.-....++-+...++-..|..+|++....++.|+ ...|.
T Consensus 420 AfrIFeLGLkkf-----------------------~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~ 476 (656)
T KOG1914|consen 420 AFRIFELGLKKF-----------------------GDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWD 476 (656)
T ss_pred HHHHHHHHHHhc-----------------------CCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHH
Confidence 899987654421 11445557778888888888889999999887755555 46788
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHH
Q 038190 446 VMICGLCIEGGIEKAYDLLPDMEEK 470 (531)
Q Consensus 446 ~l~~~~~~~g~~~~A~~~~~~~~~~ 470 (531)
.++.--..-|+...++++-+++...
T Consensus 477 r~l~yES~vGdL~si~~lekR~~~a 501 (656)
T KOG1914|consen 477 RMLEYESNVGDLNSILKLEKRRFTA 501 (656)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHHh
Confidence 8888888888888887776665443
No 131
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.36 E-value=6.3e-05 Score=60.06 Aligned_cols=108 Identities=12% Similarity=0.022 Sum_probs=82.2
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 038190 300 ELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMG 379 (531)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 379 (531)
.+++...+. .|+ .+..+...+...|++++|...|+......+. +...|..+..++...|++++|...|+...+.
T Consensus 14 ~~~~~al~~--~p~--~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l- 87 (144)
T PRK15359 14 DILKQLLSV--DPE--TVYASGYASWQEGDYSRAVIDFSWLVMAQPW-SWRAHIALAGTWMMLKEYTTAINFYGHALML- 87 (144)
T ss_pred HHHHHHHHc--CHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc-
Confidence 455555544 233 3445667778888888898888888877543 6778888888888888999988888888763
Q ss_pred CCCCcccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHhhhC
Q 038190 380 VRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRY 435 (531)
Q Consensus 380 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 435 (531)
.|+ +...+..+..++...|++++|...|+...+.
T Consensus 88 -~p~---------------------~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~ 121 (144)
T PRK15359 88 -DAS---------------------HPEPVYQTGVCLKMMGEPGLAREAFQTAIKM 121 (144)
T ss_pred -CCC---------------------CcHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 333 7788888888888889999999988888874
No 132
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.34 E-value=0.0043 Score=61.81 Aligned_cols=415 Identities=15% Similarity=0.093 Sum_probs=234.3
Q ss_pred CHHHHHHHHHHHHHcCCCCChhhHHHHHHH--HHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCcchHHHH
Q 038190 67 ELNDALCFFNYMIHMQPTPFMPSFNSLLGA--LAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVA 144 (531)
Q Consensus 67 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~--~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~ 144 (531)
++..|+.....+.+..|+ ..|..++.+ +.+.|+.++|..+++.....+.. |..|...+-.+|.+.+..++|..+
T Consensus 24 qfkkal~~~~kllkk~Pn---~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~~~~~ 99 (932)
T KOG2053|consen 24 QFKKALAKLGKLLKKHPN---ALYAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDEAVHL 99 (932)
T ss_pred HHHHHHHHHHHHHHHCCC---cHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhHHHHH
Confidence 799999999999886654 234555555 45889999999999988776644 888999999999999999999999
Q ss_pred HHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCCCcHHhHHHHHHHHHhcC-C---------hhH
Q 038190 145 LGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDG-F---------VNK 214 (531)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~---------~~~ 214 (531)
|++.... .|+......+..+|.+.+++.+-.++--++-+. .|. +...|-++++.+...- . ..-
T Consensus 100 Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~--~pk---~~yyfWsV~Slilqs~~~~~~~~~~i~l~L 172 (932)
T KOG2053|consen 100 YERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKN--FPK---RAYYFWSVISLILQSIFSENELLDPILLAL 172 (932)
T ss_pred HHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CCc---ccchHHHHHHHHHHhccCCcccccchhHHH
Confidence 9999877 566777777888899988776544333233221 221 4555555555554431 1 223
Q ss_pred HHHHHHHHhhCC-CCCCHhhHHHHHHHHHhcCChhhhhcchHHHHHHHH-HHHhCCCCCCccccCCHhhHHHHHHHHhcC
Q 038190 215 VRVLFLDMKGRG-IYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHE-EFVNGNGELGVICHPDVLSYCSIINSLCKD 292 (531)
Q Consensus 215 a~~~~~~m~~~g-~~p~~~~~~~li~~~~~~~~~~~a~~~~~~a~~~~~-~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 292 (531)
|.+.++.+.+.+ -.-+..-...-...+...|++++|.. ++. ...+.- ..-+...-+.-+..+...
T Consensus 173 A~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~-------~l~~~la~~l------~~~~~~l~~~~~dllk~l 239 (932)
T KOG2053|consen 173 AEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALE-------FLAITLAEKL------TSANLYLENKKLDLLKLL 239 (932)
T ss_pred HHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHH-------HHHHHHHHhc------cccchHHHHHHHHHHHHh
Confidence 556666666553 21122222222334455666666666 652 222222 223344445567778888
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH----------------HhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 038190 293 VLVDKAKELFLDMKSRGIIPDVVVYSSLIDGY----------------CLMGRIDDARKLFVSIESEGCIPDTSSYNTLI 356 (531)
Q Consensus 293 ~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~----------------~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li 356 (531)
+++.+..++-.++...|. |. |...++.+ ...+..+...+..++..... ....|-+-+
T Consensus 240 ~~w~~l~~l~~~Ll~k~~--Dd--y~~~~~sv~klLe~~~~~~a~~~~s~~~~l~~~~ek~~~~i~~~---~Rgp~LA~l 312 (932)
T KOG2053|consen 240 NRWQELFELSSRLLEKGN--DD--YKIYTDSVFKLLELLNKEPAEAAHSLSKSLDECIEKAQKNIGSK---SRGPYLARL 312 (932)
T ss_pred cChHHHHHHHHHHHHhCC--cc--hHHHHHHHHHHHHhcccccchhhhhhhhhHHHHHHHHHHhhccc---ccCcHHHHH
Confidence 999999888888888753 32 32222211 11223333333333333321 112233333
Q ss_pred HHH---HhcCCHHHHHHHHHHHHhCCCCCC----------cccHHHHHHHHHHHHhCCCCC--CHH---HHHHHHHHHHc
Q 038190 357 NSY---SKIEKVEEALSLYGEMISMGVRPD----------NSCILEAAELFRTLHNTKFEL--DLT---VFNCLVDGLCK 418 (531)
Q Consensus 357 ~~~---~~~~~~~~a~~~~~~~~~~~~~~~----------~~~~~~a~~~~~~~~~~~~~~--~~~---~~~~l~~~~~~ 418 (531)
.++ -.-|+.+++...|-+-. |-.|- .-...+-..+........... |.. -+.+.+..-..
T Consensus 313 el~kr~~~~gd~ee~~~~y~~kf--g~kpcc~~Dl~~yl~~l~~~q~~~l~~~l~~~~~~~s~~~k~l~~h~c~l~~~rl 390 (932)
T KOG2053|consen 313 ELDKRYKLIGDSEEMLSYYFKKF--GDKPCCAIDLNHYLGHLNIDQLKSLMSKLVLADDDSSGDEKVLQQHLCVLLLLRL 390 (932)
T ss_pred HHHHHhcccCChHHHHHHHHHHh--CCCcHhHhhHHHhhccCCHHHHHHHHHHhhccCCcchhhHHHHHHHHHHHHHHHH
Confidence 333 34577777665553321 22221 122233333443333221110 111 12222333333
Q ss_pred CCC-----hHHHHHHHHHhh---hCC------CCCcH---------HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhHH
Q 038190 419 SWR-----LRSAWELFKKLP---RYG------PEPNV---------VTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECL 475 (531)
Q Consensus 419 ~g~-----~~~A~~~~~~~~---~~g------~~p~~---------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~i~~~~ 475 (531)
.|. .+.-..++.+.. +.| +-|+. .+.+.|++.|.+.++... +-
T Consensus 391 ~G~~~~l~ad~i~a~~~kl~~~ye~gls~~K~ll~TE~~~g~~~llLav~~Lid~~rktnd~~~--------------l~ 456 (932)
T KOG2053|consen 391 LGLYEKLPADSILAYVRKLKLTYEKGLSLSKDLLPTEYSFGDELLLLAVNHLIDLWRKTNDLTD--------------LF 456 (932)
T ss_pred hhccccCChHHHHHHHHHHHHHHhccccccccccccccccHHHHHHHHHHHHHHHHHhcCcHHH--------------HH
Confidence 342 233444444332 223 22232 234567777777777652 23
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChhHHHhhHHHhhhcchhhhhc
Q 038190 476 KAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLLPSFLSRNQEESKL 529 (531)
Q Consensus 476 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 529 (531)
+|+-+++...... +.|..+--.+++.|.-.|-+..|.++++.+--+++..+++
T Consensus 457 eaI~LLE~glt~s-~hnf~~KLlLiriY~~lGa~p~a~~~y~tLdIK~IQ~DTl 509 (932)
T KOG2053|consen 457 EAITLLENGLTKS-PHNFQTKLLLIRIYSYLGAFPDAYELYKTLDIKNIQTDTL 509 (932)
T ss_pred HHHHHHHHHhhcC-CccHHHHHHHHHHHHHhcCChhHHHHHHhcchHHhhhccc
Confidence 4566666655433 2345555568888888899999999999988888877764
No 133
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.29 E-value=0.0001 Score=74.32 Aligned_cols=133 Identities=9% Similarity=-0.009 Sum_probs=84.4
Q ss_pred ChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCcchHHHHHHHHHHCCCCCChhhHHHHHH
Q 038190 86 FMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIR 165 (531)
Q Consensus 86 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 165 (531)
++.++-.|.....+.|.+++|..+++...+.. +-+...+..+..++.+.+++++|...+++.....+. +......+..
T Consensus 85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~-Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~-~~~~~~~~a~ 162 (694)
T PRK15179 85 TELFQVLVARALEAAHRSDEGLAVWRGIHQRF-PDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSS-SAREILLEAK 162 (694)
T ss_pred cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCC-CHHHHHHHHH
Confidence 45566666666666677777777777766653 333445666666666777777777777776666433 5555566666
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCCCCCcHHhHHHHHHHHHhcCChhHHHHHHHHHhhC
Q 038190 166 GLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGR 225 (531)
Q Consensus 166 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 225 (531)
++.+.|++++|..+|+++... .|+ +..++..+...+...|+.++|...|+...+.
T Consensus 163 ~l~~~g~~~~A~~~y~~~~~~--~p~---~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~ 217 (694)
T PRK15179 163 SWDEIGQSEQADACFERLSRQ--HPE---FENGYVGWAQSLTRRGALWRARDVLQAGLDA 217 (694)
T ss_pred HHHHhcchHHHHHHHHHHHhc--CCC---cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 666777777777777776653 221 4556666666666777777777777666553
No 134
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.26 E-value=4.1e-05 Score=60.78 Aligned_cols=110 Identities=12% Similarity=-0.015 Sum_probs=79.5
Q ss_pred HHHHHHHcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCcchHHHHHHHHHHCCC
Q 038190 74 FFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVF 153 (531)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 153 (531)
.|+.+....+. +......+...+.+.|++++|...|+.+...+ +.+...+..+...+...|+++.|..+++...+.+
T Consensus 5 ~~~~~l~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~- 81 (135)
T TIGR02552 5 TLKDLLGLDSE-QLEQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD- 81 (135)
T ss_pred hHHHHHcCChh-hHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-
Confidence 34555554443 44556666677778888888888888887765 4566777778888888888888888888877765
Q ss_pred CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 038190 154 SPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAF 186 (531)
Q Consensus 154 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 186 (531)
+.+...+..+..++...|++++|...|+.....
T Consensus 82 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 82 PDDPRPYFHAAECLLALGEPESALKALDLAIEI 114 (135)
T ss_pred CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 335666777777888888888888888887775
No 135
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.22 E-value=0.00013 Score=67.80 Aligned_cols=128 Identities=16% Similarity=0.027 Sum_probs=93.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHH
Q 038190 352 YNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKK 431 (531)
Q Consensus 352 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 431 (531)
...|+..+...++++.|..+|+++.+.. +.....++..+...++-.+|.+++++
T Consensus 172 v~~Ll~~l~~t~~~~~ai~lle~L~~~~--------------------------pev~~~LA~v~l~~~~E~~AI~ll~~ 225 (395)
T PF09295_consen 172 VDTLLKYLSLTQRYDEAIELLEKLRERD--------------------------PEVAVLLARVYLLMNEEVEAIRLLNE 225 (395)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHhcC--------------------------CcHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 3455566666788888888888887642 23555678888888888889999888
Q ss_pred hhhCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhccCChh
Q 038190 432 LPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECLKAIELLHKMAKRYVKPD-EITVSILEELLNKDENCH 510 (531)
Q Consensus 432 ~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~i~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~ 510 (531)
..... +-+...+......|.+.++++.|+++.+++.+. .|+ ..+|..|+.+|...|+++
T Consensus 226 aL~~~-p~d~~LL~~Qa~fLl~k~~~~lAL~iAk~av~l-------------------sP~~f~~W~~La~~Yi~~~d~e 285 (395)
T PF09295_consen 226 ALKEN-PQDSELLNLQAEFLLSKKKYELALEIAKKAVEL-------------------SPSEFETWYQLAECYIQLGDFE 285 (395)
T ss_pred HHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh-------------------CchhHHHHHHHHHHHHhcCCHH
Confidence 88642 235666666667788888888887776665542 344 568999999999999999
Q ss_pred HHHhhHHHhhhcchh
Q 038190 511 ECMNLLPSFLSRNQE 525 (531)
Q Consensus 511 ~a~~~~~~~~~~~~~ 525 (531)
+|+..++.+|.....
T Consensus 286 ~ALlaLNs~Pm~~~~ 300 (395)
T PF09295_consen 286 NALLALNSCPMLTYK 300 (395)
T ss_pred HHHHHHhcCcCCCCc
Confidence 999999988866433
No 136
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.18 E-value=0.00024 Score=66.09 Aligned_cols=126 Identities=20% Similarity=0.213 Sum_probs=104.1
Q ss_pred hhHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 038190 280 LSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSY 359 (531)
Q Consensus 280 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~ 359 (531)
.....++..+...++++.|..+++++.+.. |+ ....++..+...++-.+|.+++++..+.... +......-...|
T Consensus 170 yLv~~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~-d~~LL~~Qa~fL 244 (395)
T PF09295_consen 170 YLVDTLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKENPQ-DSELLNLQAEFL 244 (395)
T ss_pred HHHHHHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCC-CHHHHHHHHHHH
Confidence 345567777888899999999999999873 44 4455788888889999999999998876433 666666677789
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHhh
Q 038190 360 SKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLP 433 (531)
Q Consensus 360 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 433 (531)
.+.++++.|+.+.+++.+. .|+ +..+|..|..+|...|+++.|+..++.+.
T Consensus 245 l~k~~~~lAL~iAk~av~l--sP~---------------------~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 245 LSKKKYELALEIAKKAVEL--SPS---------------------EFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred HhcCCHHHHHHHHHHHHHh--Cch---------------------hHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 9999999999999999874 343 67899999999999999999999998876
No 137
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.11 E-value=4.1e-06 Score=47.86 Aligned_cols=33 Identities=24% Similarity=0.437 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHcCCChHHHHHHHHHhhhCCCCC
Q 038190 407 TVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEP 439 (531)
Q Consensus 407 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p 439 (531)
.+|+.++.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 589999999999999999999999999999887
No 138
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.11 E-value=5.4e-06 Score=47.72 Aligned_cols=33 Identities=21% Similarity=0.343 Sum_probs=27.2
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC
Q 038190 89 SFNSLLGALAGKKYYVNFICLSERLNTIGLLPD 121 (531)
Q Consensus 89 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~ 121 (531)
+||.+|.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 688888888888888888888888888888776
No 139
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.10 E-value=5.3e-06 Score=47.77 Aligned_cols=34 Identities=50% Similarity=0.885 Sum_probs=32.1
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHhhhCCCCCcH
Q 038190 408 VFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNV 441 (531)
Q Consensus 408 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~ 441 (531)
+|++++.+|++.|++++|.++|++|.+.|+.||.
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 7999999999999999999999999999999973
No 140
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.09 E-value=0.00014 Score=57.68 Aligned_cols=117 Identities=11% Similarity=-0.047 Sum_probs=92.6
Q ss_pred HHHHHHhCCCCCCHhhHHHHHHHHHccCCcchHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 038190 109 LSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDC 188 (531)
Q Consensus 109 ~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 188 (531)
.++++.+.. +.+......+...+...|++++|...++.+...++ .+...+..+...+...|++++|...+++....
T Consensus 5 ~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-- 80 (135)
T TIGR02552 5 TLKDLLGLD-SEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDP-YNSRYWLGLAACCQMLKEYEEAIDAYALAAAL-- 80 (135)
T ss_pred hHHHHHcCC-hhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--
Confidence 455555543 23445666777888899999999999999988763 37788889999999999999999999998876
Q ss_pred CCCCCCcHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHhhH
Q 038190 189 RPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVY 234 (531)
Q Consensus 189 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~ 234 (531)
.| .+...+..+...+...|++++|...|+...+. .|+...+
T Consensus 81 ~p---~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~ 121 (135)
T TIGR02552 81 DP---DDPRPYFHAAECLLALGEPESALKALDLAIEI--CGENPEY 121 (135)
T ss_pred CC---CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--ccccchH
Confidence 34 26778888899999999999999999998875 3444443
No 141
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.09 E-value=6.1e-06 Score=47.13 Aligned_cols=33 Identities=24% Similarity=0.273 Sum_probs=25.0
Q ss_pred hhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCC
Q 038190 88 PSFNSLLGALAGKKYYVNFICLSERLNTIGLLP 120 (531)
Q Consensus 88 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~ 120 (531)
.+|+.+|.+|++.|+++.|.++|+.|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 467777777777777777777777777777765
No 142
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.08 E-value=0.0003 Score=56.40 Aligned_cols=118 Identities=12% Similarity=0.037 Sum_probs=67.9
Q ss_pred cCCHHHHHHHHHHHHhcCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHhCCCCC
Q 038190 327 MGRIDDARKLFVSIESEGCIPD--TSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFEL 404 (531)
Q Consensus 327 ~g~~~~a~~~~~~~~~~g~~p~--~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 404 (531)
.++...+...++.+.+...... ....-.+...+...|++++|...|+........+ ..
T Consensus 24 ~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~--------------------~l 83 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDP--------------------EL 83 (145)
T ss_pred CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCH--------------------HH
Confidence 5666677666777666532211 1122233455666777777777777766643111 00
Q ss_pred CHHHHHHHHHHHHcCCChHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 038190 405 DLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPD 466 (531)
Q Consensus 405 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 466 (531)
.......|...+...|++++|+..++..... ......+....+.|.+.|++++|+..|+.
T Consensus 84 ~~~a~l~LA~~~~~~~~~d~Al~~L~~~~~~--~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 84 KPLARLRLARILLQQGQYDEALATLQQIPDE--AFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHhccCc--chHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 1223445666777777777777777664432 22344556667777777777777776654
No 143
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=98.07 E-value=0.0093 Score=54.87 Aligned_cols=141 Identities=13% Similarity=0.070 Sum_probs=77.7
Q ss_pred CcCCHHHHHHHHHHHHHcCCC-CC----hhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHH--HccC
Q 038190 64 GEVELNDALCFFNYMIHMQPT-PF----MPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCF--CKMI 136 (531)
Q Consensus 64 ~~g~~~~A~~~~~~~~~~~~~-~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~--~~~g 136 (531)
.++++.+|..+|.++...... |. ...-+.++++|..+ +.+.....+..+.+. .| ...|-.+..++ -+.+
T Consensus 18 kq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl~-nld~Me~~l~~l~~~--~~-~s~~l~LF~~L~~Y~~k 93 (549)
T PF07079_consen 18 KQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFLN-NLDLMEKQLMELRQQ--FG-KSAYLPLFKALVAYKQK 93 (549)
T ss_pred HHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHHh-hHHHHHHHHHHHHHh--cC-CchHHHHHHHHHHHHhh
Confidence 456888888888887664322 11 11234566666543 444444444444433 12 33444555443 3667
Q ss_pred CcchHHHHHHHHHHC--CCCC---C---------hhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCCCcHHhHHHH
Q 038190 137 GVSDAFVALGRILRK--VFSP---D---------VVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASI 202 (531)
Q Consensus 137 ~~~~a~~~~~~~~~~--~~~~---~---------~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l 202 (531)
.+..|.+.+..-... +..+ + -..-+..+.++...|++.++..+++++...-.......++.+|+.+
T Consensus 94 ~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~ 173 (549)
T PF07079_consen 94 EYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDRA 173 (549)
T ss_pred hHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHHH
Confidence 777777777665543 2221 1 1112344566677777777777777777665554444566666665
Q ss_pred HHHHHh
Q 038190 203 IDGLCK 208 (531)
Q Consensus 203 ~~~~~~ 208 (531)
+-.+.+
T Consensus 174 vlmlsr 179 (549)
T PF07079_consen 174 VLMLSR 179 (549)
T ss_pred HHHHhH
Confidence 555544
No 144
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.05 E-value=0.018 Score=57.58 Aligned_cols=193 Identities=10% Similarity=0.025 Sum_probs=128.6
Q ss_pred CCCcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCcchH
Q 038190 62 KSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDA 141 (531)
Q Consensus 62 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a 141 (531)
.-+.|+.++|..+++.....++. |..+...+-..|...++.++|..+|++.... .|+......++.+|.+.+++..-
T Consensus 53 l~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~q 129 (932)
T KOG2053|consen 53 LFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDEAVHLYERANQK--YPSEELLYHLFMAYVREKSYKKQ 129 (932)
T ss_pred HHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhHHHHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHH
Confidence 33578999999999988776665 8889999999999999999999999999876 57788888999999998887765
Q ss_pred HHHHHHHHHCCCCCChhhHHHHHHHHHhcCC----------hHHHHHHHHHHHHcCCCCCCCCcHHhHHHHHHHHHhcCC
Q 038190 142 FVALGRILRKVFSPDVVTLGCLIRGLCMQGK----------FTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGF 211 (531)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~----------~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 211 (531)
.++--++-+.- +-+...+=++++.+...-. ..-|.+.++.+...+..- -+..-...-...+...|.
T Consensus 130 Qkaa~~LyK~~-pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~---~s~aE~~Lyl~iL~~~~k 205 (932)
T KOG2053|consen 130 QKAALQLYKNF-PKRAYYFWSVISLILQSIFSENELLDPILLALAEKMVQKLLEKKGKI---ESEAEIILYLLILELQGK 205 (932)
T ss_pred HHHHHHHHHhC-CcccchHHHHHHHHHHhccCCcccccchhHHHHHHHHHHHhccCCcc---chHHHHHHHHHHHHhccc
Confidence 55544444432 2244444345555444321 234556666666643111 122233334455667888
Q ss_pred hhHHHHHHH-HHhhCCCCCCHhhHHHHHHHHHhcCChhhhhcchHHHHHHHHHHHhCC
Q 038190 212 VNKVRVLFL-DMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGN 268 (531)
Q Consensus 212 ~~~a~~~~~-~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~ 268 (531)
+++|.+++. ...+.-...+...-+.-+..+...++|.+..+ +-.++...+
T Consensus 206 ~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~-------l~~~Ll~k~ 256 (932)
T KOG2053|consen 206 YQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFE-------LSSRLLEKG 256 (932)
T ss_pred HHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHH-------HHHHHHHhC
Confidence 999999994 44443333344444566677777777777666 666666655
No 145
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=98.04 E-value=0.00075 Score=63.22 Aligned_cols=108 Identities=16% Similarity=0.169 Sum_probs=91.8
Q ss_pred cCCHhhHHHHHHHHhcCCCHHHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHH
Q 038190 276 HPDVLSYCSIINSLCKDVLVDKAKELFLDMKSR--GIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYN 353 (531)
Q Consensus 276 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~ 353 (531)
+.+......+++.+....+.+.+..++...... ....-..|..++++.|.+.|..+.+..++..=...|+-||..+++
T Consensus 63 ~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n 142 (429)
T PF10037_consen 63 PVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFN 142 (429)
T ss_pred CCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHH
Confidence 456667777888888888899999999888776 232334566799999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 038190 354 TLINSYSKIEKVEEALSLYGEMISMGVRPD 383 (531)
Q Consensus 354 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~ 383 (531)
.|+..+.+.|++..|.++...|...+...+
T Consensus 143 ~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~ 172 (429)
T PF10037_consen 143 LLMDHFLKKGNYKSAAKVATEMMLQEEFDN 172 (429)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHHhhccCC
Confidence 999999999999999999999987766554
No 146
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.03 E-value=0.0054 Score=51.88 Aligned_cols=76 Identities=16% Similarity=0.243 Sum_probs=30.0
Q ss_pred cCChHHHHHHHHHHHHcCCCCCCCCcHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChhh
Q 038190 170 QGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWED 249 (531)
Q Consensus 170 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~ 249 (531)
.|.+++|+++++.+.+.+ |. |.+++--=+...-..|..-+|++-+....+. +..|...|.-+...|...|+++.
T Consensus 99 ~~~~~~A~e~y~~lL~dd--pt---~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~k 172 (289)
T KOG3060|consen 99 TGNYKEAIEYYESLLEDD--PT---DTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEK 172 (289)
T ss_pred hhchhhHHHHHHHHhccC--cc---hhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHH
Confidence 344444444444444431 21 3334433333333334433444444333332 22244444444444443333333
Q ss_pred hh
Q 038190 250 AK 251 (531)
Q Consensus 250 a~ 251 (531)
|.
T Consensus 173 A~ 174 (289)
T KOG3060|consen 173 AA 174 (289)
T ss_pred HH
Confidence 33
No 147
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.02 E-value=0.00029 Score=56.50 Aligned_cols=126 Identities=17% Similarity=0.084 Sum_probs=86.9
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHh---hHHHHHHHHHccCCcchHHHHHHHHHHCCCCCCh--hhHHHH
Q 038190 89 SFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFV---SLNILMNCFCKMIGVSDAFVALGRILRKVFSPDV--VTLGCL 163 (531)
Q Consensus 89 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~---~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~l 163 (531)
.|..++..+ ..++...+...++.+.... +.+.. ..-.+...+...|++++|...|+.+......++. .....|
T Consensus 14 ~y~~~~~~~-~~~~~~~~~~~~~~l~~~~-~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~L 91 (145)
T PF09976_consen 14 LYEQALQAL-QAGDPAKAEAAAEQLAKDY-PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRL 91 (145)
T ss_pred HHHHHHHHH-HCCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHH
Confidence 344445444 4778888888888887764 22322 3334456677889999999999998887633332 244556
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCCCCCcHHhHHHHHHHHHhcCChhHHHHHHHHH
Q 038190 164 IRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDM 222 (531)
Q Consensus 164 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m 222 (531)
..++...|++++|+..++..... + .....+......|.+.|++++|...|+..
T Consensus 92 A~~~~~~~~~d~Al~~L~~~~~~---~---~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 92 ARILLQQGQYDEALATLQQIPDE---A---FKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHcCCHHHHHHHHHhccCc---c---hHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 78888889999999888664321 1 24556777888889999999998888753
No 148
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.02 E-value=0.0065 Score=51.40 Aligned_cols=199 Identities=11% Similarity=-0.019 Sum_probs=138.8
Q ss_pred cccCCCCCcCCHHHHHHHHHHHHHc---C-CCCCh-hhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHH
Q 038190 57 LSENSKSGEVELNDALCFFNYMIHM---Q-PTPFM-PSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNC 131 (531)
Q Consensus 57 l~~~~~~~~g~~~~A~~~~~~~~~~---~-~~~~~-~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~ 131 (531)
+.........+.++..++++.+... + ..++. ..|..++-+....|+.+.|...++++...- +-+...-..-...
T Consensus 17 ~~~wr~~~~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f-p~S~RV~~lkam~ 95 (289)
T KOG3060|consen 17 MRKWREETVRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF-PGSKRVGKLKAML 95 (289)
T ss_pred HHHHHhccccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC-CCChhHHHHHHHH
Confidence 3344556667899999999998763 2 23333 356667777888999999999999998763 2232222222223
Q ss_pred HHccCCcchHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCCCcHHhHHHHHHHHHhcCC
Q 038190 132 FCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGF 211 (531)
Q Consensus 132 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 211 (531)
+-..|++++|.++|+..++.. +.|..++---+.+.-..|+..+|++-+...... -+ .|..+|.-+...|...|+
T Consensus 96 lEa~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~--F~---~D~EAW~eLaeiY~~~~~ 169 (289)
T KOG3060|consen 96 LEATGNYKEAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK--FM---NDQEAWHELAEIYLSEGD 169 (289)
T ss_pred HHHhhchhhHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH--hc---CcHHHHHHHHHHHHhHhH
Confidence 445689999999999999886 346677777777777788888888887777664 23 289999999999999999
Q ss_pred hhHHHHHHHHHhhCCCCC-CHhhHHHHHHHHHhcCChhhhhcchHHHHHHHHHHHhCC
Q 038190 212 VNKVRVLFLDMKGRGIYP-DAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGN 268 (531)
Q Consensus 212 ~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~ 268 (531)
+++|.-.++++.-. .| +...+..+...+.-.|. ...++.+.++|.+..+..
T Consensus 170 f~kA~fClEE~ll~--~P~n~l~f~rlae~~Yt~gg----~eN~~~arkyy~~alkl~ 221 (289)
T KOG3060|consen 170 FEKAAFCLEELLLI--QPFNPLYFQRLAEVLYTQGG----AENLELARKYYERALKLN 221 (289)
T ss_pred HHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHHhh----HHHHHHHHHHHHHHHHhC
Confidence 99999999999864 33 44444455555444432 233444555666666544
No 149
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.89 E-value=0.0002 Score=59.04 Aligned_cols=35 Identities=17% Similarity=0.056 Sum_probs=23.9
Q ss_pred cchHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCC
Q 038190 138 VSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGK 172 (531)
Q Consensus 138 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 172 (531)
-+-|++++++|...|+-||..++..+++.+++.+.
T Consensus 119 q~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 119 QECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred HHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 35567777777777777777777777777766553
No 150
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.85 E-value=0.00029 Score=51.23 Aligned_cols=80 Identities=21% Similarity=0.367 Sum_probs=69.2
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHhcC--------CHHHHHHHHHHHHhcCCCCCHHHH
Q 038190 282 YCSIINSLCKDVLVDKAKELFLDMKSRGI-IPDVVVYSSLIDGYCLMG--------RIDDARKLFVSIESEGCIPDTSSY 352 (531)
Q Consensus 282 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~ll~~~~~~g--------~~~~a~~~~~~~~~~g~~p~~~~~ 352 (531)
-...|..+...+++...-.+|+.+++.|+ .|+..+|+.++.+.++.. ++.....+|+.|+..+++|+..+|
T Consensus 28 ~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etY 107 (120)
T PF08579_consen 28 QIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETY 107 (120)
T ss_pred HHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHH
Confidence 34456667777999999999999999999 999999999999888753 356778899999999999999999
Q ss_pred HHHHHHHHh
Q 038190 353 NTLINSYSK 361 (531)
Q Consensus 353 ~~li~~~~~ 361 (531)
+.++..+.+
T Consensus 108 nivl~~Llk 116 (120)
T PF08579_consen 108 NIVLGSLLK 116 (120)
T ss_pred HHHHHHHHH
Confidence 999998765
No 151
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.79 E-value=0.00048 Score=64.45 Aligned_cols=101 Identities=10% Similarity=0.053 Sum_probs=51.9
Q ss_pred ChhhHHHHHHHHHccCCHHHHHHHHHHHHhC--CCCCCHhhHHHHHHHHHccCCcchHHHHHHHHHHCCCCCChhhHHHH
Q 038190 86 FMPSFNSLLGALAGKKYYVNFICLSERLNTI--GLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCL 163 (531)
Q Consensus 86 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~--g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 163 (531)
+......++..+....+++.+..++-+.... ....-+.|.+++++.|.+.|..+.++.++..=...|+-||..++|.|
T Consensus 65 S~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~L 144 (429)
T PF10037_consen 65 SSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLL 144 (429)
T ss_pred cHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHH
Confidence 3444455555555555555555555555433 11222334445555555555555555555555555555555555555
Q ss_pred HHHHHhcCChHHHHHHHHHHHHc
Q 038190 164 IRGLCMQGKFTEASGLFTKFVAF 186 (531)
Q Consensus 164 i~~~~~~g~~~~a~~~~~~~~~~ 186 (531)
++.+.+.|++..|.++...|...
T Consensus 145 md~fl~~~~~~~A~~V~~~~~lQ 167 (429)
T PF10037_consen 145 MDHFLKKGNYKSAAKVATEMMLQ 167 (429)
T ss_pred HHHHhhcccHHHHHHHHHHHHHh
Confidence 55555555555555555555443
No 152
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.77 E-value=0.011 Score=57.28 Aligned_cols=102 Identities=13% Similarity=0.093 Sum_probs=59.0
Q ss_pred hHHHHHHHHHccCCcchHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCCCcHHhHHHHH
Q 038190 124 SLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASII 203 (531)
Q Consensus 124 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~ 203 (531)
+|+.+...++....|+.|.+.|..-.. . ...+.+|.+..++++-..+...+.+ +....-.+.
T Consensus 798 A~r~ig~~fa~~~~We~A~~yY~~~~~------~---e~~~ecly~le~f~~LE~la~~Lpe---------~s~llp~~a 859 (1189)
T KOG2041|consen 798 AFRNIGETFAEMMEWEEAAKYYSYCGD------T---ENQIECLYRLELFGELEVLARTLPE---------DSELLPVMA 859 (1189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccc------h---HhHHHHHHHHHhhhhHHHHHHhcCc---------ccchHHHHH
Confidence 455555555555556666555543211 1 1244555555555544444444332 566677788
Q ss_pred HHHHhcCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChhhhhc
Q 038190 204 DGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKG 252 (531)
Q Consensus 204 ~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~ 252 (531)
.++.+.|..++|.+.|-+...- ...++.|....+|.+|.+
T Consensus 860 ~mf~svGMC~qAV~a~Lr~s~p---------kaAv~tCv~LnQW~~ave 899 (1189)
T KOG2041|consen 860 DMFTSVGMCDQAVEAYLRRSLP---------KAAVHTCVELNQWGEAVE 899 (1189)
T ss_pred HHHHhhchHHHHHHHHHhccCc---------HHHHHHHHHHHHHHHHHH
Confidence 8888888888888777544321 234567777777766665
No 153
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.77 E-value=0.004 Score=56.38 Aligned_cols=136 Identities=11% Similarity=0.068 Sum_probs=73.9
Q ss_pred hHHHHHHHHhcC-CCHHHHHHHHHHHHhC----CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC-----CH
Q 038190 281 SYCSIINSLCKD-VLVDKAKELFLDMKSR----GII-PDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIP-----DT 349 (531)
Q Consensus 281 ~~~~ll~~~~~~-~~~~~a~~~~~~~~~~----~~~-~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p-----~~ 349 (531)
.+..+...|... |+++.|.+.|++..+. +.. .-..++..+...+.+.|++++|.++|+++...-... +.
T Consensus 116 ~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~ 195 (282)
T PF14938_consen 116 CLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSA 195 (282)
T ss_dssp HHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhH
Confidence 455566666666 7777777777765542 200 012345566677788888888888888876543221 11
Q ss_pred H-HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc--CCChHHHH
Q 038190 350 S-SYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCK--SWRLRSAW 426 (531)
Q Consensus 350 ~-~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~g~~~~A~ 426 (531)
. .|-..+-++...|++..|...+++......... -.........|+.+|-. ...++.|+
T Consensus 196 ~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~------------------~s~E~~~~~~l~~A~~~~D~e~f~~av 257 (282)
T PF14938_consen 196 KEYFLKAILCHLAMGDYVAARKALERYCSQDPSFA------------------SSREYKFLEDLLEAYEEGDVEAFTEAV 257 (282)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTST------------------TSHHHHHHHHHHHHHHTT-CCCHHHHC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCC------------------CcHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 1 222334466667888888888888765321110 01123345556666643 33466666
Q ss_pred HHHHHhhh
Q 038190 427 ELFKKLPR 434 (531)
Q Consensus 427 ~~~~~~~~ 434 (531)
.-|+.+.+
T Consensus 258 ~~~d~~~~ 265 (282)
T PF14938_consen 258 AEYDSISR 265 (282)
T ss_dssp HHHTTSS-
T ss_pred HHHcccCc
Confidence 66666654
No 154
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.76 E-value=3.4e-05 Score=42.81 Aligned_cols=29 Identities=38% Similarity=0.713 Sum_probs=17.7
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHhhCC
Q 038190 198 CYASIIDGLCKDGFVNKVRVLFLDMKGRG 226 (531)
Q Consensus 198 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~g 226 (531)
+|+.++++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 46666666666666666666666666554
No 155
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.74 E-value=0.0011 Score=50.99 Aligned_cols=97 Identities=12% Similarity=-0.067 Sum_probs=44.4
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHhCCCC--CCHhhHHHHHHHHHccCCcchHHHHHHHHHHCCCCC--ChhhHHHHHH
Q 038190 90 FNSLLGALAGKKYYVNFICLSERLNTIGLL--PDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSP--DVVTLGCLIR 165 (531)
Q Consensus 90 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~--~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~li~ 165 (531)
+..+...+.+.|++++|.+.|+.+.+.... .....+..+..++.+.|+++.|...|+.+....+.. ...++..+..
T Consensus 5 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~ 84 (119)
T TIGR02795 5 YYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGM 84 (119)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHH
Confidence 344444455555555555555555443200 012233444455555555555555555554432211 1223444444
Q ss_pred HHHhcCChHHHHHHHHHHHHc
Q 038190 166 GLCMQGKFTEASGLFTKFVAF 186 (531)
Q Consensus 166 ~~~~~g~~~~a~~~~~~~~~~ 186 (531)
++...|+.++|...++++...
T Consensus 85 ~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 85 SLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHhCChHHHHHHHHHHHHH
Confidence 555555555555555555443
No 156
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.74 E-value=4.9e-05 Score=42.15 Aligned_cols=30 Identities=13% Similarity=0.326 Sum_probs=22.3
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHhCCC
Q 038190 89 SFNSLLGALAGKKYYVNFICLSERLNTIGL 118 (531)
Q Consensus 89 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~ 118 (531)
+|+.+|++|++.|++++|.++|++|.+.|+
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 677777777777777777777777776653
No 157
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.74 E-value=0.023 Score=49.91 Aligned_cols=178 Identities=9% Similarity=-0.009 Sum_probs=118.6
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHH---HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 038190 282 YCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVY---SSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINS 358 (531)
Q Consensus 282 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~---~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~ 358 (531)
+-.....+...|++++|.+.|+.+...... +.... -.+..+|.+.++++.|...+++..+..+.-...-|...+.+
T Consensus 35 ~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~-s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g 113 (243)
T PRK10866 35 IYATAQQKLQDGNWKQAITQLEALDNRYPF-GPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRG 113 (243)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHH
Confidence 333455567789999999999999886322 22332 45567788999999999999999887544333344444444
Q ss_pred HHh--c---------------CC---HHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc
Q 038190 359 YSK--I---------------EK---VEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCK 418 (531)
Q Consensus 359 ~~~--~---------------~~---~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 418 (531)
.+. . .+ ..+|+..|+++++. -|+..-..+|...+..+.+. =...--.+...|.+
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~--yP~S~ya~~A~~rl~~l~~~----la~~e~~ia~~Y~~ 187 (243)
T PRK10866 114 LTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRG--YPNSQYTTDATKRLVFLKDR----LAKYELSVAEYYTK 187 (243)
T ss_pred HhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHH--CcCChhHHHHHHHHHHHHHH----HHHHHHHHHHHHHH
Confidence 321 1 12 24566777777763 56656666666555544421 01122356777999
Q ss_pred CCChHHHHHHHHHhhhC--CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 038190 419 SWRLRSAWELFKKLPRY--GPEPNVVTYTVMICGLCIEGGIEKAYDLLPD 466 (531)
Q Consensus 419 ~g~~~~A~~~~~~~~~~--g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 466 (531)
.|.+..|..-++.+++. +.+........++.+|...|..++|.+....
T Consensus 188 ~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~ 237 (243)
T PRK10866 188 RGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKI 237 (243)
T ss_pred cCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 99999999999999873 3333456677888999999999998766543
No 158
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.74 E-value=0.0016 Score=58.91 Aligned_cols=155 Identities=17% Similarity=0.154 Sum_probs=97.7
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhc-CChhhhhcchHHHHHHHHHHHhCCCCCCccccC
Q 038190 199 YASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCA-VNWEDAKGNTSAALELHEEFVNGNGELGVICHP 277 (531)
Q Consensus 199 ~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~-~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~ 277 (531)
|...+..|...|++..|-+++..+-+ .|... |+++.|...|.+|.++|+.-.. ...
T Consensus 97 ~~~A~~~y~~~G~~~~aA~~~~~lA~---------------~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~--------~~~ 153 (282)
T PF14938_consen 97 YEKAIEIYREAGRFSQAAKCLKELAE---------------IYEEQLGDYEKAIEYYQKAAELYEQEGS--------PHS 153 (282)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHH---------------HHCCTT--HHHHHHHHHHHHHHHHHTT---------HHH
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHH---------------HHHHHcCCHHHHHHHHHHHHHHHHHCCC--------hhh
Confidence 33344556777887777766665543 45555 7888899988888888876331 112
Q ss_pred CHhhHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCC-----CHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CCCC-
Q 038190 278 DVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIP-----DVV-VYSSLIDGYCLMGRIDDARKLFVSIESEG--CIPD- 348 (531)
Q Consensus 278 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-----~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~g--~~p~- 348 (531)
-..++..+...+.+.|++++|.++|+++....... +.. .+-..+-++...||+..|.+.|++..... +..+
T Consensus 154 a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~ 233 (282)
T PF14938_consen 154 AAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSR 233 (282)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcH
Confidence 24467778889999999999999999988753321 222 22333446677899999999999987653 2212
Q ss_pred -HHHHHHHHHHHHhc--CCHHHHHHHHHHHH
Q 038190 349 -TSSYNTLINSYSKI--EKVEEALSLYGEMI 376 (531)
Q Consensus 349 -~~~~~~li~~~~~~--~~~~~a~~~~~~~~ 376 (531)
......|+.+|-.. ..+..++.-|+.+.
T Consensus 234 E~~~~~~l~~A~~~~D~e~f~~av~~~d~~~ 264 (282)
T PF14938_consen 234 EYKFLEDLLEAYEEGDVEAFTEAVAEYDSIS 264 (282)
T ss_dssp HHHHHHHHHHHHHTT-CCCHHHHCHHHTTSS
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHcccC
Confidence 34456677777542 35666666665543
No 159
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.73 E-value=4.7e-05 Score=54.42 Aligned_cols=80 Identities=18% Similarity=0.265 Sum_probs=42.3
Q ss_pred CCHHHHHHHHHHHHHcCCC-CChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCcchHHHH
Q 038190 66 VELNDALCFFNYMIHMQPT-PFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVA 144 (531)
Q Consensus 66 g~~~~A~~~~~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~ 144 (531)
|+++.|+.+|+++.+..+. ++...|..+..++.+.|++++|+.++++ .+.+ +.+......+..++.+.|++++|+.+
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~-~~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLD-PSNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHH-HCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCC-CCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 4666666666666665542 2333444456666666666666666665 2221 11223333445566666666666666
Q ss_pred HHH
Q 038190 145 LGR 147 (531)
Q Consensus 145 ~~~ 147 (531)
|++
T Consensus 81 l~~ 83 (84)
T PF12895_consen 81 LEK 83 (84)
T ss_dssp HHH
T ss_pred Hhc
Confidence 554
No 160
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.72 E-value=0.00053 Score=50.16 Aligned_cols=94 Identities=14% Similarity=0.039 Sum_probs=57.5
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCcchHHHHHHHHHHCCCCCChhhHHHHHHHHHh
Q 038190 90 FNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCM 169 (531)
Q Consensus 90 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 169 (531)
|..+...+...|++++|...+++..+.. +.+...+..+..++...++++.|...++...+.... +..++..+...+..
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 80 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPD-NAKAYYNLGLAYYK 80 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc-chhHHHHHHHHHHH
Confidence 4445555666677777777777666543 233355566666666667777777777666665422 33455666666666
Q ss_pred cCChHHHHHHHHHHHH
Q 038190 170 QGKFTEASGLFTKFVA 185 (531)
Q Consensus 170 ~g~~~~a~~~~~~~~~ 185 (531)
.|+++.|...+.....
T Consensus 81 ~~~~~~a~~~~~~~~~ 96 (100)
T cd00189 81 LGKYEEALEAYEKALE 96 (100)
T ss_pred HHhHHHHHHHHHHHHc
Confidence 6777777666666554
No 161
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.71 E-value=0.0013 Score=47.98 Aligned_cols=89 Identities=15% Similarity=0.131 Sum_probs=70.2
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHhhhCCC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 038190 408 VFNCLVDGLCKSWRLRSAWELFKKLPRYGP-EPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECLKAIELLHKMAK 486 (531)
Q Consensus 408 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~i~~~~~a~~~~~~~~~ 486 (531)
+-...|..+...+++...-.+|+.+++.|+ -|...+|+.++.+.++..--..++ = .+.-..+.+|+.|+.
T Consensus 27 t~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~i--e-------~kl~~LLtvYqDiL~ 97 (120)
T PF08579_consen 27 TQIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDI--E-------NKLTNLLTVYQDILS 97 (120)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhH--H-------HHHHHHHHHHHHHHH
Confidence 334556677777999999999999999999 999999999999887543221111 1 133456889999999
Q ss_pred cCCCCCHHHHHHHHHHHhc
Q 038190 487 RYVKPDEITVSILEELLNK 505 (531)
Q Consensus 487 ~~~~~~~~~~~~l~~~~~~ 505 (531)
.+++|+..+|+.++..+.+
T Consensus 98 ~~lKP~~etYnivl~~Llk 116 (120)
T PF08579_consen 98 NKLKPNDETYNIVLGSLLK 116 (120)
T ss_pred hccCCcHHHHHHHHHHHHH
Confidence 9999999999999998875
No 162
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.68 E-value=0.0017 Score=50.05 Aligned_cols=102 Identities=18% Similarity=0.030 Sum_probs=70.9
Q ss_pred hhHHHHHHHHHccCCcchHHHHHHHHHHCCCC--CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCCCcHHhHH
Q 038190 123 VSLNILMNCFCKMIGVSDAFVALGRILRKVFS--PDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYA 200 (531)
Q Consensus 123 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 200 (531)
.++..+...+.+.|++++|...|+.+...... .....+..+..++.+.|+++.|...|+.+.... |+......++.
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~~~ 80 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKY--PKSPKAPDALL 80 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHC--CCCCcccHHHH
Confidence 34556667777788888888888888765322 113455667788888888888888888877652 32212345677
Q ss_pred HHHHHHHhcCChhHHHHHHHHHhhCC
Q 038190 201 SIIDGLCKDGFVNKVRVLFLDMKGRG 226 (531)
Q Consensus 201 ~l~~~~~~~~~~~~a~~~~~~m~~~g 226 (531)
.+..++...|+.++|...++++.+..
T Consensus 81 ~~~~~~~~~~~~~~A~~~~~~~~~~~ 106 (119)
T TIGR02795 81 KLGMSLQELGDKEKAKATLQQVIKRY 106 (119)
T ss_pred HHHHHHHHhCChHHHHHHHHHHHHHC
Confidence 77778888888888888888887763
No 163
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.66 E-value=0.0017 Score=53.74 Aligned_cols=109 Identities=13% Similarity=-0.019 Sum_probs=66.6
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCCCcHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHhhHHH
Q 038190 157 VVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNS 236 (531)
Q Consensus 157 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ 236 (531)
...|..+...+...|++++|+..|++.......+ .....+|..+...+...|++++|+..++...... +....++..
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~--~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~-~~~~~~~~~ 111 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDP--YDRSYILYNIGLIHTSNGEHTKALEYYFQALERN-PFLPQALNN 111 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccc--hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHH
Confidence 3445555566666677777777776665542111 0123456666666777777777777776666431 112334444
Q ss_pred HHHHHH-------hcCChhhhhcchHHHHHHHHHHHhCC
Q 038190 237 LIRVYC-------CAVNWEDAKGNTSAALELHEEFVNGN 268 (531)
Q Consensus 237 li~~~~-------~~~~~~~a~~~~~~a~~~~~~~~~~~ 268 (531)
+...+. ..|+++.|...+++++.+++......
T Consensus 112 la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~ 150 (168)
T CHL00033 112 MAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALA 150 (168)
T ss_pred HHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhC
Confidence 444444 77888888888888888888887654
No 164
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.65 E-value=0.00082 Score=62.85 Aligned_cols=86 Identities=9% Similarity=-0.007 Sum_probs=56.6
Q ss_pred cCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCcchHHHH
Q 038190 65 EVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVA 144 (531)
Q Consensus 65 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~ 144 (531)
.|+++.|++.|+++++..+. +...|..+..+|.+.|++++|+..++++++.. +.+...|..+..+|...|+++.|...
T Consensus 15 ~~~~~~Ai~~~~~Al~~~P~-~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg~~~eA~~~ 92 (356)
T PLN03088 15 DDDFALAVDLYTQAIDLDPN-NAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLEEYQTAKAA 92 (356)
T ss_pred cCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 34677777777777666554 55566666666677777777777777776654 33555666666666677777777777
Q ss_pred HHHHHHCC
Q 038190 145 LGRILRKV 152 (531)
Q Consensus 145 ~~~~~~~~ 152 (531)
|+..++..
T Consensus 93 ~~~al~l~ 100 (356)
T PLN03088 93 LEKGASLA 100 (356)
T ss_pred HHHHHHhC
Confidence 77766653
No 165
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.65 E-value=0.0028 Score=52.40 Aligned_cols=107 Identities=15% Similarity=-0.022 Sum_probs=72.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHH
Q 038190 349 TSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWEL 428 (531)
Q Consensus 349 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 428 (531)
...|..+...+...|++++|...|++.......+ .....++..+..+|...|++++|...
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~--------------------~~~~~~~~~lg~~~~~~g~~~eA~~~ 94 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDP--------------------YDRSYILYNIGLIHTSNGEHTKALEY 94 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccc--------------------hhhHHHHHHHHHHHHHcCCHHHHHHH
Confidence 4456666777777888888888888876532111 01235788888888899999999999
Q ss_pred HHHhhhCCCCCcHHHHHHHHHHHH-------HcCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 038190 429 FKKLPRYGPEPNVVTYTVMICGLC-------IEGGIEKAYDLLPDMEEKIRECLKAIELLHKMAK 486 (531)
Q Consensus 429 ~~~~~~~g~~p~~~~~~~l~~~~~-------~~g~~~~A~~~~~~~~~~i~~~~~a~~~~~~~~~ 486 (531)
+++..... +....++..+...+. ..|+++.|+..+ ++|..++++...
T Consensus 95 ~~~Al~~~-~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~----------~~a~~~~~~a~~ 148 (168)
T CHL00033 95 YFQALERN-PFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWF----------DQAAEYWKQAIA 148 (168)
T ss_pred HHHHHHhC-cCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHH----------HHHHHHHHHHHH
Confidence 98888641 223455666666666 777777776655 456677777764
No 166
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.63 E-value=0.032 Score=50.83 Aligned_cols=275 Identities=13% Similarity=0.032 Sum_probs=146.8
Q ss_pred HHccCCcchHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCCCcHHhHHHHHHHHHhcCC
Q 038190 132 FCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGF 211 (531)
Q Consensus 132 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 211 (531)
+.+..++..|+..+..+++..+. +..-|..-...+...|++++|.--.+.-++. +++ ......-.-+.+...++
T Consensus 59 ~yk~k~Y~nal~~yt~Ai~~~pd-~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~--kd~---~~k~~~r~~~c~~a~~~ 132 (486)
T KOG0550|consen 59 FYKQKTYGNALKNYTFAIDMCPD-NASYYSNRAATLMMLGRFEEALGDARQSVRL--KDG---FSKGQLREGQCHLALSD 132 (486)
T ss_pred HHHHhhHHHHHHHHHHHHHhCcc-chhhhchhHHHHHHHHhHhhcccchhhheec--CCC---ccccccchhhhhhhhHH
Confidence 34455666666667666666543 4555555555566666666665544443332 221 12223333333334444
Q ss_pred hhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChhhhhcchHHHHHHHHHHHhCCCCCCccccCCHhhHHHH-HHHHh
Q 038190 212 VNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSI-INSLC 290 (531)
Q Consensus 212 ~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l-l~~~~ 290 (531)
..+|.+.++ +...+ .. ..++. .++.+..... -+|...++..+ ..++.
T Consensus 133 ~i~A~~~~~---------~~~~~-~~----------anal~-------~~~~~~~s~s-----~~pac~~a~~lka~cl~ 180 (486)
T KOG0550|consen 133 LIEAEEKLK---------SKQAY-KA----------ANALP-------TLEKLAPSHS-----REPACFKAKLLKAECLA 180 (486)
T ss_pred HHHHHHHhh---------hhhhh-HH----------hhhhh-------hhhccccccc-----CCchhhHHHHhhhhhhh
Confidence 444444443 11111 00 00111 2222222210 12333334333 23455
Q ss_pred cCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH--HhcCCHHHHHHHHHHHHhcCCCCCHHHH-------------HHH
Q 038190 291 KDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGY--CLMGRIDDARKLFVSIESEGCIPDTSSY-------------NTL 355 (531)
Q Consensus 291 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~--~~~g~~~~a~~~~~~~~~~g~~p~~~~~-------------~~l 355 (531)
-.|++++|..+--.+++.. ....+...+++. --.++.+.+...|++.+..+ |+...- ..=
T Consensus 181 ~~~~~~~a~~ea~~ilkld---~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ld--pdh~~sk~~~~~~k~le~~k~~ 255 (486)
T KOG0550|consen 181 FLGDYDEAQSEAIDILKLD---ATNAEALYVRGLCLYYNDNADKAINHFQQALRLD--PDHQKSKSASMMPKKLEVKKER 255 (486)
T ss_pred hcccchhHHHHHHHHHhcc---cchhHHHHhcccccccccchHHHHHHHhhhhccC--hhhhhHHhHhhhHHHHHHHHhh
Confidence 6777777777766666542 122333333332 23567788888888777654 222211 111
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHhhhC
Q 038190 356 INSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRY 435 (531)
Q Consensus 356 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 435 (531)
.+-..+.|.+..|.+.|.+.+. +.| .+..++...|.....+..+.|+..+|+.-.++....
T Consensus 256 gN~~fk~G~y~~A~E~Yteal~--idP-----------------~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~i 316 (486)
T KOG0550|consen 256 GNDAFKNGNYRKAYECYTEALN--IDP-----------------SNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKI 316 (486)
T ss_pred hhhHhhccchhHHHHHHHHhhc--CCc-----------------cccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhc
Confidence 1223456677777777766654 333 245668888988899999999999999999988863
Q ss_pred CCCCc-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 038190 436 GPEPN-VVTYTVMICGLCIEGGIEKAYDLLPDMEEK 470 (531)
Q Consensus 436 g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 470 (531)
.+. ...|-.-..++...++|++|++-|++..+.
T Consensus 317 --D~syikall~ra~c~l~le~~e~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 317 --DSSYIKALLRRANCHLALEKWEEAVEDYEKAMQL 350 (486)
T ss_pred --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 222 122333344566788999999999887765
No 167
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.63 E-value=0.0023 Score=57.68 Aligned_cols=130 Identities=16% Similarity=0.081 Sum_probs=60.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHH-HHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHH
Q 038190 316 VYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINS-YSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELF 394 (531)
Q Consensus 316 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~ 394 (531)
+|..+++...+.+..+.|..+|.+..+.+. .+...|...... |...++.+.|..+|+...+. .
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~-~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~--f------------- 66 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDKR-CTYHVYVAYALMEYYCNKDPKRARKIFERGLKK--F------------- 66 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-S-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH--H-------------
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--C-------------
Confidence 445555555555555555555555553321 122223222222 12234444455555555442 1
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHhhhCCCCCcH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 038190 395 RTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNV---VTYTVMICGLCIEGGIEKAYDLLPDMEEK 470 (531)
Q Consensus 395 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 470 (531)
..+...|...++.+.+.|+.+.|..+|++.... +.++. ..|...+.--.+.|+.+.+.++.+++.+.
T Consensus 67 --------~~~~~~~~~Y~~~l~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 67 --------PSDPDFWLEYLDFLIKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp --------TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred --------CCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 114555555555556666666666666665543 22221 35555555555566666555555554443
No 168
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.60 E-value=0.00075 Score=53.17 Aligned_cols=99 Identities=13% Similarity=-0.015 Sum_probs=81.1
Q ss_pred hhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCcchHHHHHHHHHHCCCCCChhhHHHHHHH
Q 038190 87 MPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRG 166 (531)
Q Consensus 87 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 166 (531)
....-.+...+...|++++|..+|+.+.... +-+..-|-.|.-++-..|++++|+..|.......+. +...+-.+..+
T Consensus 35 l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~D-p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~d-dp~~~~~ag~c 112 (157)
T PRK15363 35 LNTLYRYAMQLMEVKEFAGAARLFQLLTIYD-AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKID-APQAPWAAAEC 112 (157)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CchHHHHHHHH
Confidence 3445556666778899999999999988765 446667778888888899999999999999888754 77788888999
Q ss_pred HHhcCChHHHHHHHHHHHHcC
Q 038190 167 LCMQGKFTEASGLFTKFVAFD 187 (531)
Q Consensus 167 ~~~~g~~~~a~~~~~~~~~~~ 187 (531)
+...|+.+.|.+.|+..+...
T Consensus 113 ~L~lG~~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 113 YLACDNVCYAIKALKAVVRIC 133 (157)
T ss_pred HHHcCCHHHHHHHHHHHHHHh
Confidence 999999999999999888753
No 169
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.57 E-value=0.061 Score=49.16 Aligned_cols=109 Identities=16% Similarity=0.094 Sum_probs=63.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHH
Q 038190 316 VYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFR 395 (531)
Q Consensus 316 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~ 395 (531)
+.+..|.-+...|+...|.++-.+.. .|+..-|...+.+++..++|++-..+... .-
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s----kK--------------- 235 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS----KK--------------- 235 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC----CC---------------
Confidence 33444555566666666666654442 25666677777777777777665544221 10
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 038190 396 TLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPD 466 (531)
Q Consensus 396 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 466 (531)
.+.-|..++.+|.+.|+..+|..+..++. +..-+..|.+.|++.+|.+.--+
T Consensus 236 ---------sPIGyepFv~~~~~~~~~~eA~~yI~k~~----------~~~rv~~y~~~~~~~~A~~~A~~ 287 (319)
T PF04840_consen 236 ---------SPIGYEPFVEACLKYGNKKEASKYIPKIP----------DEERVEMYLKCGDYKEAAQEAFK 287 (319)
T ss_pred ---------CCCChHHHHHHHHHCCCHHHHHHHHHhCC----------hHHHHHHHHHCCCHHHHHHHHHH
Confidence 33456666777777777777776666522 13345566667777766655443
No 170
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.57 E-value=0.003 Score=52.36 Aligned_cols=91 Identities=11% Similarity=-0.056 Sum_probs=56.2
Q ss_pred hhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC--HhhHHHHHHHHHccCCcchHHHHHHHHHHCCCCCChhhHHHHH
Q 038190 87 MPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPD--FVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLI 164 (531)
Q Consensus 87 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li 164 (531)
...|..+...+...|++++|+..|++..+....+. ...+..+..++.+.|+++.|...++++++..+. +...+..+.
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg 113 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPK-QPSALNNIA 113 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-cHHHHHHHH
Confidence 33566666667777777777777777765432221 345666666777777777777777777665322 344555556
Q ss_pred HHHHhcCChHHHHH
Q 038190 165 RGLCMQGKFTEASG 178 (531)
Q Consensus 165 ~~~~~~g~~~~a~~ 178 (531)
.++...|+...+..
T Consensus 114 ~~~~~~g~~~~a~~ 127 (172)
T PRK02603 114 VIYHKRGEKAEEAG 127 (172)
T ss_pred HHHHHcCChHhHhh
Confidence 66666666555443
No 171
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.56 E-value=0.0047 Score=55.91 Aligned_cols=138 Identities=15% Similarity=0.046 Sum_probs=93.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH----hcCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHH
Q 038190 316 VYSSLIDGYCLMGRIDDARKLFVSIE----SEGCI-PDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEA 390 (531)
Q Consensus 316 ~~~~ll~~~~~~g~~~~a~~~~~~~~----~~g~~-p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~a 390 (531)
.|..|-+.|--.|+++.|+...+.-+ +.|-. .....+..+..++.-.|+++.|.+.|..-.. .|
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~-----------LA 265 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLN-----------LA 265 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHH-----------HH
Confidence 45555566666789999987766422 22322 2345677888899999999999998876532 12
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHhhhC-----CCCCcHHHHHHHHHHHHHcCCHHHHHHHHH
Q 038190 391 AELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRY-----GPEPNVVTYTVMICGLCIEGGIEKAYDLLP 465 (531)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 465 (531)
+++-++.. .....-+|...|.-..+++.|+.++.+-+.. ...-....+-+|..++...|..++|+.+.+
T Consensus 266 ielg~r~v------EAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae 339 (639)
T KOG1130|consen 266 IELGNRTV------EAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAE 339 (639)
T ss_pred HHhcchhH------HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 22222222 2334567888888889999999998865431 112245678889999999999999998887
Q ss_pred HHHHH
Q 038190 466 DMEEK 470 (531)
Q Consensus 466 ~~~~~ 470 (531)
.-.+.
T Consensus 340 ~hl~~ 344 (639)
T KOG1130|consen 340 LHLRS 344 (639)
T ss_pred HHHHH
Confidence 76655
No 172
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.55 E-value=0.0019 Score=50.90 Aligned_cols=96 Identities=7% Similarity=-0.187 Sum_probs=78.3
Q ss_pred hHHHHHHHHHccCCcchHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCCCcHHhHHHHH
Q 038190 124 SLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASII 203 (531)
Q Consensus 124 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~ 203 (531)
....+...+...|++++|..+|+.+....+. +..-|-.|.-++-..|++.+|+..|......+ |+ |...+-.+.
T Consensus 37 ~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~-~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~--~d---dp~~~~~ag 110 (157)
T PRK15363 37 TLYRYAMQLMEVKEFAGAARLFQLLTIYDAW-SFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK--ID---APQAPWAAA 110 (157)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC--CC---CchHHHHHH
Confidence 3444555666889999999999998887644 66677778888889999999999999988874 43 788888899
Q ss_pred HHHHhcCChhHHHHHHHHHhhC
Q 038190 204 DGLCKDGFVNKVRVLFLDMKGR 225 (531)
Q Consensus 204 ~~~~~~~~~~~a~~~~~~m~~~ 225 (531)
.++...|+.+.|.+.|+.....
T Consensus 111 ~c~L~lG~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 111 ECYLACDNVCYAIKALKAVVRI 132 (157)
T ss_pred HHHHHcCCHHHHHHHHHHHHHH
Confidence 9999999999999999987765
No 173
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.55 E-value=0.0027 Score=59.45 Aligned_cols=91 Identities=7% Similarity=-0.117 Sum_probs=75.1
Q ss_pred HHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCcchHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCh
Q 038190 94 LGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKF 173 (531)
Q Consensus 94 i~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 173 (531)
...+...|+++.|+++|+++++.. +.+...|..+..+|...|+++.|+..+++++...+. +...|..+..+|...|++
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~-~~~a~~~lg~~~~~lg~~ 86 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIELDPS-LAKAYLRKGTACMKLEEY 86 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHhCCH
Confidence 445667789999999999998875 456778888888888999999999999999887533 667788888889999999
Q ss_pred HHHHHHHHHHHHc
Q 038190 174 TEASGLFTKFVAF 186 (531)
Q Consensus 174 ~~a~~~~~~~~~~ 186 (531)
++|+..|++....
T Consensus 87 ~eA~~~~~~al~l 99 (356)
T PLN03088 87 QTAKAALEKGASL 99 (356)
T ss_pred HHHHHHHHHHHHh
Confidence 9999999988876
No 174
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.54 E-value=0.044 Score=48.13 Aligned_cols=61 Identities=16% Similarity=-0.012 Sum_probs=34.1
Q ss_pred HHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhH---HHHHHHHHccCCcchHHHHHHHHHHCCCC
Q 038190 93 LLGALAGKKYYVNFICLSERLNTIGLLPDFVSL---NILMNCFCKMIGVSDAFVALGRILRKVFS 154 (531)
Q Consensus 93 li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~---~~li~~~~~~g~~~~a~~~~~~~~~~~~~ 154 (531)
....+...|++++|++.|+.+...- +-+..+. -.++.++.+.++++.|...+++.++..+.
T Consensus 38 ~A~~~~~~g~y~~Ai~~f~~l~~~y-P~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~ 101 (243)
T PRK10866 38 TAQQKLQDGNWKQAITQLEALDNRY-PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPT 101 (243)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcC
Confidence 3344455667777777777766543 1112221 33445556667777777777666665443
No 175
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.52 E-value=0.0026 Score=52.68 Aligned_cols=88 Identities=19% Similarity=0.306 Sum_probs=75.3
Q ss_pred CCHhhHHHHHHHHhc-----CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc----------------CCHHHHHH
Q 038190 277 PDVLSYCSIINSLCK-----DVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLM----------------GRIDDARK 335 (531)
Q Consensus 277 ~~~~~~~~ll~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~----------------g~~~~a~~ 335 (531)
.+-.+|..++..|.+ .|..+-....+..|.+-|+.-|..+|+.|++.+=+. .+.+-|++
T Consensus 45 k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i~ 124 (228)
T PF06239_consen 45 KDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAID 124 (228)
T ss_pred ccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHHH
Confidence 567788888888864 477888888899999999999999999999987542 24578999
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHhcCC
Q 038190 336 LFVSIESEGCIPDTSSYNTLINSYSKIEK 364 (531)
Q Consensus 336 ~~~~~~~~g~~p~~~~~~~li~~~~~~~~ 364 (531)
++++|...|+.||..++..+++.+.+.+.
T Consensus 125 lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 125 LLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred HHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 99999999999999999999999976654
No 176
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.52 E-value=0.0014 Score=59.21 Aligned_cols=160 Identities=14% Similarity=0.085 Sum_probs=96.9
Q ss_pred HHHHHHHHHhcCChhhhhcchHHHHHHHHHHHhCCCCCCccccCCHhhHHHHHHHHhcCCCHHHHHHHHHHHHhC----C
Q 038190 234 YNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSR----G 309 (531)
Q Consensus 234 ~~~li~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~ 309 (531)
|..+-..|.-.|+++.|+...+.-+.+-+++-.. .....++..+.+++.-.|+++.|.+.|+..... |
T Consensus 198 ~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDr--------AaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg 269 (639)
T KOG1130|consen 198 YGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDR--------AAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELG 269 (639)
T ss_pred hcccCceeeeeccHHHHHHHHHHHHHHHHHhhhH--------HHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhc
Confidence 4444444555566666655444433333333221 233567888999999999999999988865432 2
Q ss_pred -CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc----C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC--
Q 038190 310 -IIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESE----G-CIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVR-- 381 (531)
Q Consensus 310 -~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~----g-~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~-- 381 (531)
-......+-.|.+.|.-..++++|+..+.+-+.. + ..-....+.+|..+|...|..++|+.+.+.-.+....
T Consensus 270 ~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~~s~ev~ 349 (639)
T KOG1130|consen 270 NRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLRSSLEVN 349 (639)
T ss_pred chhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhC
Confidence 1223455667777888888899998888763321 1 0114567788999999999999999887765543222
Q ss_pred CCcccHHHHHHHHHHHHhCC
Q 038190 382 PDNSCILEAAELFRTLHNTK 401 (531)
Q Consensus 382 ~~~~~~~~a~~~~~~~~~~~ 401 (531)
-..|.+..-..+.+.....|
T Consensus 350 D~sgelTar~Nlsdl~~~lG 369 (639)
T KOG1130|consen 350 DTSGELTARDNLSDLILELG 369 (639)
T ss_pred CcchhhhhhhhhHHHHHHhC
Confidence 12333333344444444444
No 177
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.51 E-value=0.033 Score=44.83 Aligned_cols=162 Identities=13% Similarity=0.087 Sum_probs=111.9
Q ss_pred HHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCcchHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChH
Q 038190 95 GALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFT 174 (531)
Q Consensus 95 ~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 174 (531)
.+..+.=|++....-..+-.+ +.|+..-...|..++.+.|+..+|...|++...--+..|......+.++....+++.
T Consensus 64 ~a~~q~ldP~R~~Rea~~~~~--~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A 141 (251)
T COG4700 64 MALQQKLDPERHLREATEELA--IAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFA 141 (251)
T ss_pred HHHHHhcChhHHHHHHHHHHh--hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHH
Confidence 334444444444333333222 356777777888999999999999999999887656667788888889999999999
Q ss_pred HHHHHHHHHHHcCCCCCCCCcHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChhhhhcch
Q 038190 175 EASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNT 254 (531)
Q Consensus 175 ~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~ 254 (531)
.|...++.+.+.. |. ..+..+.-.+.+.+...|.+..|...|+..... -|+...-......+.+.|+.+++..
T Consensus 142 ~a~~tLe~l~e~~--pa-~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La~qgr~~ea~a-- 214 (251)
T COG4700 142 AAQQTLEDLMEYN--PA-FRSPDGHLLFARTLAAQGKYADAESAFEVAISY--YPGPQARIYYAEMLAKQGRLREANA-- 214 (251)
T ss_pred HHHHHHHHHhhcC--Cc-cCCCCchHHHHHHHHhcCCchhHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcchhHHHH--
Confidence 9999999998753 21 124445666788899999999999999998875 3444333333445667777777665
Q ss_pred HHHHHHHHHHHh
Q 038190 255 SAALELHEEFVN 266 (531)
Q Consensus 255 ~~a~~~~~~~~~ 266 (531)
+..++++.+.+
T Consensus 215 -q~~~v~d~~~r 225 (251)
T COG4700 215 -QYVAVVDTAKR 225 (251)
T ss_pred -HHHHHHHHHHh
Confidence 33335555444
No 178
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.51 E-value=0.0038 Score=51.76 Aligned_cols=116 Identities=10% Similarity=-0.052 Sum_probs=76.7
Q ss_pred HhhHHHHHHHHHccCCcchHHHHHHHHHHCCCCCC--hhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCCCcHHhH
Q 038190 122 FVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPD--VVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICY 199 (531)
Q Consensus 122 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 199 (531)
...+..+...+...|++++|...|+++++....+. ...+..+..++.+.|++++|+..+++.... .|. +...+
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~---~~~~~ 109 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALEL--NPK---QPSAL 109 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--Ccc---cHHHH
Confidence 34566666677777888888888877776543322 346677777777788888888877777765 332 56666
Q ss_pred HHHHHHHHhcCC--------------hhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCC
Q 038190 200 ASIIDGLCKDGF--------------VNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVN 246 (531)
Q Consensus 200 ~~l~~~~~~~~~--------------~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~ 246 (531)
..+...+...|+ +++|.+++++.... +...|..++..+...|+
T Consensus 110 ~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~----~p~~~~~~~~~~~~~~~ 166 (172)
T PRK02603 110 NNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRL----APNNYIEAQNWLKTTGR 166 (172)
T ss_pred HHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhh----CchhHHHHHHHHHhcCc
Confidence 677777777666 67788888777776 23335555555555544
No 179
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.50 E-value=0.0015 Score=58.78 Aligned_cols=133 Identities=13% Similarity=-0.003 Sum_probs=96.9
Q ss_pred hhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHH-HHccCCcchHHHHHHHHHHCCCCCChhhHHHHHHH
Q 038190 88 PSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNC-FCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRG 166 (531)
Q Consensus 88 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~-~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 166 (531)
.+|-.+|+..-+.+..+.|..+|.+..+.+ ..+..+|...... +.-.++.+.|..+|+...+. +..+...|...++.
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHH
Confidence 468888888888888999999999998654 2233444444443 22346777799999998876 45578888899999
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCCCCC-cHHhHHHHHHHHHhcCChhHHHHHHHHHhhC
Q 038190 167 LCMQGKFTEASGLFTKFVAFDCRPNVIP-NVICYASIIDGLCKDGFVNKVRVLFLDMKGR 225 (531)
Q Consensus 167 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 225 (531)
+...|+.+.|..+|++.... -+. .. ....|...+..=.+.|+.+.+..+.+++.+.
T Consensus 80 l~~~~d~~~aR~lfer~i~~--l~~-~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISS--LPK-EKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCT--SSC-HHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHHh--cCc-hhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 99999999999999998764 211 01 2358999999889999999999999888874
No 180
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.50 E-value=0.00023 Score=50.85 Aligned_cols=60 Identities=20% Similarity=0.175 Sum_probs=45.2
Q ss_pred CHHHHHHHHHHHHcCCChHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 038190 405 DLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPD 466 (531)
Q Consensus 405 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 466 (531)
+...+-.+..+|.+.|++++|..++++ .+.+. .+....-.+..+|...|++++|++.|++
T Consensus 24 ~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~-~~~~~~~l~a~~~~~l~~y~eAi~~l~~ 83 (84)
T PF12895_consen 24 NSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDP-SNPDIHYLLARCLLKLGKYEEAIKALEK 83 (84)
T ss_dssp HHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHH-CHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCC-CCHHHHHHHHHHHHHhCCHHHHHHHHhc
Confidence 445566689999999999999999998 33211 2334455668889999999999998875
No 181
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.50 E-value=0.0023 Score=46.66 Aligned_cols=94 Identities=21% Similarity=0.209 Sum_probs=77.8
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh
Q 038190 282 YCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSK 361 (531)
Q Consensus 282 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~ 361 (531)
+..+...+...|++++|..+++.+.+.. +.+...+..+...+...|++++|.+.++...+.... +...+..+...+..
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 80 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPD-NAKAYYNLGLAYYK 80 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc-chhHHHHHHHHHHH
Confidence 5567778888999999999999988763 234467778888899999999999999998886543 45678888899999
Q ss_pred cCCHHHHHHHHHHHHh
Q 038190 362 IEKVEEALSLYGEMIS 377 (531)
Q Consensus 362 ~~~~~~a~~~~~~~~~ 377 (531)
.|+++.|...+....+
T Consensus 81 ~~~~~~a~~~~~~~~~ 96 (100)
T cd00189 81 LGKYEEALEAYEKALE 96 (100)
T ss_pred HHhHHHHHHHHHHHHc
Confidence 9999999999988765
No 182
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.48 E-value=0.11 Score=51.24 Aligned_cols=84 Identities=13% Similarity=0.123 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHH
Q 038190 350 SSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELF 429 (531)
Q Consensus 350 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 429 (531)
.+.+--+..+...|+..+|.++-.+.+ -||-..|-.-+.+++..+++++-+++-
T Consensus 685 lSl~dTv~~li~~g~~k~a~ql~~~Fk--------------------------ipdKr~~wLk~~aLa~~~kweeLekfA 738 (829)
T KOG2280|consen 685 LSLHDTVTTLILIGQNKRAEQLKSDFK--------------------------IPDKRLWWLKLTALADIKKWEELEKFA 738 (829)
T ss_pred CcHHHHHHHHHHccchHHHHHHHHhcC--------------------------CcchhhHHHHHHHHHhhhhHHHHHHHH
Confidence 344455555666677777766654432 235666766777777777777766665
Q ss_pred HHhhhCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHH
Q 038190 430 KKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLP 465 (531)
Q Consensus 430 ~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 465 (531)
+..+ .+.-|.-.+.+|.+.|+.++|.+++.
T Consensus 739 kskk------sPIGy~PFVe~c~~~~n~~EA~KYip 768 (829)
T KOG2280|consen 739 KSKK------SPIGYLPFVEACLKQGNKDEAKKYIP 768 (829)
T ss_pred hccC------CCCCchhHHHHHHhcccHHHHhhhhh
Confidence 5544 24456667777778888777766664
No 183
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.47 E-value=0.0081 Score=45.67 Aligned_cols=55 Identities=20% Similarity=0.123 Sum_probs=24.8
Q ss_pred HHHccCCcchHHHHHHHHHHCCCCCC--hhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 038190 131 CFCKMIGVSDAFVALGRILRKVFSPD--VVTLGCLIRGLCMQGKFTEASGLFTKFVA 185 (531)
Q Consensus 131 ~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 185 (531)
++-..|+.++|..+|++.+..|+... ...+-.+...+...|++++|+.+|++...
T Consensus 10 a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~ 66 (120)
T PF12688_consen 10 AHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALE 66 (120)
T ss_pred HHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 33344455555555555544443322 12333344444445555555555554443
No 184
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=97.45 E-value=0.095 Score=48.46 Aligned_cols=92 Identities=13% Similarity=0.030 Sum_probs=67.9
Q ss_pred HHHHHHHHcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCcchHHHHHHHHHHCC
Q 038190 73 CFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKV 152 (531)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 152 (531)
++-+++ +.+|. |..+|-.|+.-+..++.+++..+++++|..- ++--..+|..-+.+-....++..+..+|.+-+...
T Consensus 30 rLRerI-kdNPt-nI~S~fqLiq~~~tq~s~~~~re~yeq~~~p-fp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~ 106 (660)
T COG5107 30 RLRERI-KDNPT-NILSYFQLIQYLETQESMDAEREMYEQLSSP-FPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKS 106 (660)
T ss_pred HHHHHh-hcCch-hHHHHHHHHHHHhhhhhHHHHHHHHHHhcCC-CccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhh
Confidence 444444 34455 8889999999999999999999999999743 23344577777777777789999999999988774
Q ss_pred CCCChhhHHHHHHHHHh
Q 038190 153 FSPDVVTLGCLIRGLCM 169 (531)
Q Consensus 153 ~~~~~~~~~~li~~~~~ 169 (531)
+ +...|...+..--+
T Consensus 107 l--~ldLW~lYl~YIRr 121 (660)
T COG5107 107 L--NLDLWMLYLEYIRR 121 (660)
T ss_pred c--cHhHHHHHHHHHHh
Confidence 4 46666666654433
No 185
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.42 E-value=0.047 Score=46.61 Aligned_cols=178 Identities=17% Similarity=0.115 Sum_probs=91.2
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCCCCCcHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHH
Q 038190 163 LIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYC 242 (531)
Q Consensus 163 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~ 242 (531)
....+...|++.+|...|+.+... -|...--..+.-.++.++-+.|+++.|...++.+.+.-..-...-+...+.+.+
T Consensus 11 ~a~~~~~~g~y~~Ai~~f~~l~~~--~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~ 88 (203)
T PF13525_consen 11 KALEALQQGDYEEAIKLFEKLIDR--YPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLS 88 (203)
T ss_dssp HHHHHHHCT-HHHHHHHHHHHHHH---TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHH--CCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHH
Confidence 344556677777777777777765 232222344555667777777777777777777665311111112222222222
Q ss_pred hcCChhh------hhcchHHHHHHHHHHHhCCCCCCccccCCHhhHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHH
Q 038190 243 CAVNWED------AKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVV 316 (531)
Q Consensus 243 ~~~~~~~------a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 316 (531)
....... -.....+|+.. +..++.-|-...-..+|...+..+.+. =..-
T Consensus 89 ~~~~~~~~~~~~~D~~~~~~A~~~---------------------~~~li~~yP~S~y~~~A~~~l~~l~~~----la~~ 143 (203)
T PF13525_consen 89 YYKQIPGILRSDRDQTSTRKAIEE---------------------FEELIKRYPNSEYAEEAKKRLAELRNR----LAEH 143 (203)
T ss_dssp HHHHHHHHH-TT---HHHHHHHHH---------------------HHHHHHH-TTSTTHHHHHHHHHHHHHH----HHHH
T ss_pred HHHhCccchhcccChHHHHHHHHH---------------------HHHHHHHCcCchHHHHHHHHHHHHHHH----HHHH
Confidence 1111111 11112222223 444445555555556665555554432 0111
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCH----HHHHHHHHHHHhcCCHHHHH
Q 038190 317 YSSLIDGYCLMGRIDDARKLFVSIESEGCIPDT----SSYNTLINSYSKIEKVEEAL 369 (531)
Q Consensus 317 ~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~----~~~~~li~~~~~~~~~~~a~ 369 (531)
--.+...|.+.|.+..|..-++.+++.= |+. .....++.+|.+.|..+.+.
T Consensus 144 e~~ia~~Y~~~~~y~aA~~r~~~v~~~y--p~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 144 ELYIARFYYKRGKYKAAIIRFQYVIENY--PDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp HHHHHHHHHCTT-HHHHHHHHHHHHHHS--TTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHHC--CCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 1234567888999999999888888762 333 34566778888888877443
No 186
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.39 E-value=0.0032 Score=54.67 Aligned_cols=87 Identities=23% Similarity=0.245 Sum_probs=42.2
Q ss_pred HhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 038190 289 LCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEA 368 (531)
Q Consensus 289 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~~~~~~a 368 (531)
+.+.+++.+|+..|.+.++.. +-|.+.|..-..+|.+.|.++.|++-.+..+..+.. ...+|..|..+|...|++++|
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~-yskay~RLG~A~~~~gk~~~A 168 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPH-YSKAYGRLGLAYLALGKYEEA 168 (304)
T ss_pred HHHhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChH-HHHHHHHHHHHHHccCcHHHH
Confidence 344555555555555555442 124444444455555555555555555554443211 233445555555555555555
Q ss_pred HHHHHHHHh
Q 038190 369 LSLYGEMIS 377 (531)
Q Consensus 369 ~~~~~~~~~ 377 (531)
++.|++.++
T Consensus 169 ~~aykKaLe 177 (304)
T KOG0553|consen 169 IEAYKKALE 177 (304)
T ss_pred HHHHHhhhc
Confidence 555554443
No 187
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.37 E-value=0.016 Score=56.84 Aligned_cols=143 Identities=10% Similarity=0.034 Sum_probs=94.1
Q ss_pred CCCCCHHHHHHHHHHHHh--cC---CHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 038190 309 GIIPDVVVYSSLIDGYCL--MG---RIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD 383 (531)
Q Consensus 309 ~~~~~~~~~~~ll~~~~~--~g---~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~ 383 (531)
+.+.+...|...+++... .+ +...|..+|++..+..+. ....|..+..+|.....+. +.
T Consensus 332 ~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~-~a~a~A~la~~~~~~~~~~---------------~~ 395 (517)
T PRK10153 332 GLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPD-FTYAQAEKALADIVRHSQQ---------------PL 395 (517)
T ss_pred cCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHHhcC---------------Cc
Confidence 345677888888887443 33 377999999999987433 3444554444332211110 00
Q ss_pred -cccHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHcCCChHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHcCCHHHHH
Q 038190 384 -NSCILEAAELFRTLHNT-KFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAY 461 (531)
Q Consensus 384 -~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~ 461 (531)
...+..+.+........ ....+...|.++.-.+...|++++|...++++.+. .|+...|..+...+...|+.++|.
T Consensus 396 ~~~~l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L--~ps~~a~~~lG~~~~~~G~~~eA~ 473 (517)
T PRK10153 396 DEKQLAALSTELDNIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDL--EMSWLNYVLLGKVYELKGDNRLAA 473 (517)
T ss_pred cHHHHHHHHHHHHHhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHcCCHHHHH
Confidence 11122222222222221 12336678888887888889999999999999985 578899999999999999999998
Q ss_pred HHHHHHHH
Q 038190 462 DLLPDMEE 469 (531)
Q Consensus 462 ~~~~~~~~ 469 (531)
+.+++...
T Consensus 474 ~~~~~A~~ 481 (517)
T PRK10153 474 DAYSTAFN 481 (517)
T ss_pred HHHHHHHh
Confidence 88876543
No 188
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.36 E-value=0.0032 Score=54.71 Aligned_cols=86 Identities=16% Similarity=0.046 Sum_probs=45.0
Q ss_pred HccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCcchHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHH
Q 038190 98 AGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEAS 177 (531)
Q Consensus 98 ~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 177 (531)
.+.++|.+|+..|.+.++.. +-|...|..-..+|.+.|.++.|++-.+..+..... ...+|..|..+|...|++++|+
T Consensus 92 m~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~-yskay~RLG~A~~~~gk~~~A~ 169 (304)
T KOG0553|consen 92 MKNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPH-YSKAYGRLGLAYLALGKYEEAI 169 (304)
T ss_pred HHhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChH-HHHHHHHHHHHHHccCcHHHHH
Confidence 34455555555555555543 334444555555555555555555555555544321 3345555555555555555555
Q ss_pred HHHHHHHH
Q 038190 178 GLFTKFVA 185 (531)
Q Consensus 178 ~~~~~~~~ 185 (531)
+.|++.+.
T Consensus 170 ~aykKaLe 177 (304)
T KOG0553|consen 170 EAYKKALE 177 (304)
T ss_pred HHHHhhhc
Confidence 55555544
No 189
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.36 E-value=0.013 Score=51.42 Aligned_cols=101 Identities=18% Similarity=0.147 Sum_probs=60.1
Q ss_pred CCCHhhHHHHHHHHHccCCcchHHHHHHHHHHCCCCCChhhHHHHHHHHHhcC---ChHHHHHHHHHHHHcCCCCCCCCc
Q 038190 119 LPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQG---KFTEASGLFTKFVAFDCRPNVIPN 195 (531)
Q Consensus 119 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g---~~~~a~~~~~~~~~~~~~~~~~~~ 195 (531)
+-|...|-.|..+|...|+++.|...|.+..+... ++...+..+..++.... +..++..+|+++... +|. |
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g-~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~--D~~---~ 226 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLAG-DNPEILLGLAEALYYQAGQQMTAKARALLRQALAL--DPA---N 226 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhc--CCc---c
Confidence 44566666666666666666666666666666532 25555555554443332 344566666666655 332 5
Q ss_pred HHhHHHHHHHHHhcCChhHHHHHHHHHhhC
Q 038190 196 VICYASIIDGLCKDGFVNKVRVLFLDMKGR 225 (531)
Q Consensus 196 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 225 (531)
+.+...|...+...|++.+|...|+.|.+.
T Consensus 227 iral~lLA~~afe~g~~~~A~~~Wq~lL~~ 256 (287)
T COG4235 227 IRALSLLAFAAFEQGDYAEAAAAWQMLLDL 256 (287)
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHhc
Confidence 556666666666666666666666666665
No 190
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=97.34 E-value=0.13 Score=47.73 Aligned_cols=376 Identities=15% Similarity=0.124 Sum_probs=181.9
Q ss_pred CHHHHHHHHHHHHHcCCCCChhhHHHHHHHH--HccCCHHHHHHHHHHHHhC--CCCC------------CHhhHHHHHH
Q 038190 67 ELNDALCFFNYMIHMQPTPFMPSFNSLLGAL--AGKKYYVNFICLSERLNTI--GLLP------------DFVSLNILMN 130 (531)
Q Consensus 67 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~--~~~~~~~~a~~~~~~m~~~--g~~~------------~~~~~~~li~ 130 (531)
+++.....+....+..+ ...|-.+..++ -+.+.+..|++.+..-... +..+ |-..-+..+.
T Consensus 60 nld~Me~~l~~l~~~~~---~s~~l~LF~~L~~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~ 136 (549)
T PF07079_consen 60 NLDLMEKQLMELRQQFG---KSAYLPLFKALVAYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAH 136 (549)
T ss_pred hHHHHHHHHHHHHHhcC---CchHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHH
Confidence 45555555555544322 23455555543 3778899999988877654 3221 2222345667
Q ss_pred HHHccCCcchHHHHHHHHHHCCCC----CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCCCcHHhHHHHHHHH
Q 038190 131 CFCKMIGVSDAFVALGRILRKVFS----PDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGL 206 (531)
Q Consensus 131 ~~~~~g~~~~a~~~~~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 206 (531)
++...|++.++..+++++...-++ .+..+|+.++-.++++ .|-++.+. ...+..|+ |..++-.|
T Consensus 137 sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~vlmlsrS--------YfLEl~e~-~s~dl~pd---yYemilfY 204 (549)
T PF07079_consen 137 SLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDRAVLMLSRS--------YFLELKES-MSSDLYPD---YYEMILFY 204 (549)
T ss_pred HHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHhHH--------HHHHHHHh-cccccChH---HHHHHHHH
Confidence 788999999999999988775444 7899999999888764 33333221 11111122 44444444
Q ss_pred Hhc-C--------ChhHHHHHHHHHhhCC-CCCCHh--hHHHHHHHHH---hcCChhh--------hhcchHHHHHHHHH
Q 038190 207 CKD-G--------FVNKVRVLFLDMKGRG-IYPDAF--VYNSLIRVYC---CAVNWED--------AKGNTSAALELHEE 263 (531)
Q Consensus 207 ~~~-~--------~~~~a~~~~~~m~~~g-~~p~~~--~~~~li~~~~---~~~~~~~--------a~~~~~~a~~~~~~ 263 (531)
.+. . .+.-...++..+.+.= +.|-.. .+..++..+- ...+.+- .....+++..+.+.
T Consensus 205 ~kki~~~d~~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~mq~l~~We~~yv~p~~~LVi~~L~~~f~~~~e~~~~~ce~ 284 (549)
T PF07079_consen 205 LKKIHAFDQRPYEKFIPEEELFSTIMQHLFIVPKERLPPLMQILENWENFYVHPNYDLVIEPLKQQFMSDPEQVGHFCEA 284 (549)
T ss_pred HHHHHHHhhchHHhhCcHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHhhccCCchhHHHHHHHHHHhcChHHHHHHHHH
Confidence 432 1 1111233333332220 111100 0111111110 0000110 11111222222222
Q ss_pred HHhCCCCCCccccCCHhhHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHH-------HHHHHHHHh-cC---CHHH
Q 038190 264 FVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVY-------SSLIDGYCL-MG---RIDD 332 (531)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-------~~ll~~~~~-~g---~~~~ 332 (531)
+.... .......=+.+|..++....+.++...|.+.+.-+.-. .|+...- ..+-+..+. .. +..+
T Consensus 285 ia~~~--i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~l--dp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~ 360 (549)
T PF07079_consen 285 IASSK--IEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKIL--DPRISVSEKLLLSPKVLQDIVCEDDESYTKLRD 360 (549)
T ss_pred HHHHh--HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhc--CCcchhhhhhhcCHHHHHHHHhcchHHHHHHHH
Confidence 22111 00000111335566666666666666666666555443 3332211 111222221 11 1122
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHH---HHHhcCC-HHHHHHHHHHHHhCCCCCC---------------------cccH
Q 038190 333 ARKLFVSIESEGCIPDTSSYNTLIN---SYSKIEK-VEEALSLYGEMISMGVRPD---------------------NSCI 387 (531)
Q Consensus 333 a~~~~~~~~~~g~~p~~~~~~~li~---~~~~~~~-~~~a~~~~~~~~~~~~~~~---------------------~~~~ 387 (531)
=..+|+.+...++. .......|+. -+-+.|. -++|+++++.+.+- .+. ...+
T Consensus 361 yL~lwe~~qs~DiD-rqQLvh~L~~~Ak~lW~~g~~dekalnLLk~il~f--t~yD~ec~n~v~~fvKq~Y~qaLs~~~~ 437 (549)
T PF07079_consen 361 YLNLWEEIQSYDID-RQQLVHYLVFGAKHLWEIGQCDEKALNLLKLILQF--TNYDIECENIVFLFVKQAYKQALSMHAI 437 (549)
T ss_pred HHHHHHHHHhhccc-HHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHh--ccccHHHHHHHHHHHHHHHHHHHhhhhH
Confidence 23333333333221 0111111221 2223333 66677777666542 111 2223
Q ss_pred HHHHHHHHHHHhCCCCCC----HHHHHHHHHH--HHcCCChHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHcCCHHHHH
Q 038190 388 LEAAELFRTLHNTKFELD----LTVFNCLVDG--LCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAY 461 (531)
Q Consensus 388 ~~a~~~~~~~~~~~~~~~----~~~~~~l~~~--~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~ 461 (531)
.....+-+.+.+.|+.|- ...-|.|.++ +...|++.++.-+-..+.+ +.|++.+|..+.-++....++++|.
T Consensus 438 ~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~--iaPS~~~~RLlGl~l~e~k~Y~eA~ 515 (549)
T PF07079_consen 438 PRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTK--IAPSPQAYRLLGLCLMENKRYQEAW 515 (549)
T ss_pred HHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH--hCCcHHHHHHHHHHHHHHhhHHHHH
Confidence 333344444556666653 3344555444 3568899998887777776 6889999999988888899999998
Q ss_pred HHHHH
Q 038190 462 DLLPD 466 (531)
Q Consensus 462 ~~~~~ 466 (531)
.++..
T Consensus 516 ~~l~~ 520 (549)
T PF07079_consen 516 EYLQK 520 (549)
T ss_pred HHHHh
Confidence 88764
No 191
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.34 E-value=0.12 Score=47.29 Aligned_cols=265 Identities=16% Similarity=0.075 Sum_probs=141.5
Q ss_pred cCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCcchHHHH
Q 038190 65 EVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVA 144 (531)
Q Consensus 65 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~ 144 (531)
+.++..|+..+...++..|. ++..|..-...+...+++++|+--.+.-.+.. +-....+...-+++...++..+|...
T Consensus 62 ~k~Y~nal~~yt~Ai~~~pd-~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~k-d~~~k~~~r~~~c~~a~~~~i~A~~~ 139 (486)
T KOG0550|consen 62 QKTYGNALKNYTFAIDMCPD-NASYYSNRAATLMMLGRFEEALGDARQSVRLK-DGFSKGQLREGQCHLALSDLIEAEEK 139 (486)
T ss_pred HhhHHHHHHHHHHHHHhCcc-chhhhchhHHHHHHHHhHhhcccchhhheecC-CCccccccchhhhhhhhHHHHHHHHH
Confidence 34778888888888877665 45566555556666677777766555544332 11112333333333333443333333
Q ss_pred HH------------HHHH---CC-CCCChhhHHHH-HHHHHhcCChHHHHHHHHHHHHcCCCCCCCCcHHhHHHHHHH--
Q 038190 145 LG------------RILR---KV-FSPDVVTLGCL-IRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDG-- 205 (531)
Q Consensus 145 ~~------------~~~~---~~-~~~~~~~~~~l-i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-- 205 (531)
++ ...+ .. -+|....+..+ ..++.-.|+.++|.++--.+.+.+ ....+..++++
T Consensus 140 ~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld-------~~n~~al~vrg~~ 212 (486)
T KOG0550|consen 140 LKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLD-------ATNAEALYVRGLC 212 (486)
T ss_pred hhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcc-------cchhHHHHhcccc
Confidence 32 1111 00 01222333332 244555667777666665555542 11223333332
Q ss_pred HHhcCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChhhhhcchHHHHHHHHHHHhCCCCCCccccCCHhhHHHH
Q 038190 206 LCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSI 285 (531)
Q Consensus 206 ~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l 285 (531)
+--.++.+.+...|++.+.. .|+...-..+-..+ + .++.+...
T Consensus 213 ~yy~~~~~ka~~hf~qal~l--dpdh~~sk~~~~~~----------k-------~le~~k~~------------------ 255 (486)
T KOG0550|consen 213 LYYNDNADKAINHFQQALRL--DPDHQKSKSASMMP----------K-------KLEVKKER------------------ 255 (486)
T ss_pred cccccchHHHHHHHhhhhcc--ChhhhhHHhHhhhH----------H-------HHHHHHhh------------------
Confidence 23345666666666665543 23322211111000 1 22222222
Q ss_pred HHHHhcCCCHHHHHHHHHHHHhC---CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHH---HHHHHHH
Q 038190 286 INSLCKDVLVDKAKELFLDMKSR---GIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSY---NTLINSY 359 (531)
Q Consensus 286 l~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~---~~li~~~ 359 (531)
.+-..+.|.+..|.+.|.+.+.. +..++...|.....+..+.|+..+|+.-.+..... |..-. ..-..++
T Consensus 256 gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~i----D~syikall~ra~c~ 331 (486)
T KOG0550|consen 256 GNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKI----DSSYIKALLRRANCH 331 (486)
T ss_pred hhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhc----CHHHHHHHHHHHHHH
Confidence 23345788888888888887754 35556667777777778888888888888877765 33322 2223456
Q ss_pred HhcCCHHHHHHHHHHHHhCC
Q 038190 360 SKIEKVEEALSLYGEMISMG 379 (531)
Q Consensus 360 ~~~~~~~~a~~~~~~~~~~~ 379 (531)
...++|++|++-|+...+..
T Consensus 332 l~le~~e~AV~d~~~a~q~~ 351 (486)
T KOG0550|consen 332 LALEKWEEAVEDYEKAMQLE 351 (486)
T ss_pred HHHHHHHHHHHHHHHHHhhc
Confidence 66788888888888776643
No 192
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.33 E-value=0.017 Score=56.77 Aligned_cols=143 Identities=10% Similarity=-0.103 Sum_probs=98.1
Q ss_pred CCCChhhHHHHHHHHHcc-----CCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCC--------cchHHHHHHHHH
Q 038190 83 PTPFMPSFNSLLGALAGK-----KYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIG--------VSDAFVALGRIL 149 (531)
Q Consensus 83 ~~~~~~~~~~li~~~~~~-----~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~--------~~~a~~~~~~~~ 149 (531)
+..+..+|...+++.... ++...|+.+|++..+.. +-....|..+..++..... +..+.+...+..
T Consensus 333 ~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ld-P~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~ 411 (517)
T PRK10153 333 LPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSE-PDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIV 411 (517)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhh
Confidence 445778999999885532 23779999999999874 3345566655554433221 223333344433
Q ss_pred HC-CCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCCCcHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCC
Q 038190 150 RK-VFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIY 228 (531)
Q Consensus 150 ~~-~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~ 228 (531)
.. ....+..+|..+.-.....|++++|...+++..... |+...|..+...+...|+.++|.+.|++.... .
T Consensus 412 al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~------ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L--~ 483 (517)
T PRK10153 412 ALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE------MSWLNYVLLGKVYELKGDNRLAADAYSTAFNL--R 483 (517)
T ss_pred hcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--C
Confidence 32 123355677777777777899999999999998863 36778999999999999999999999998765 3
Q ss_pred CCHhhH
Q 038190 229 PDAFVY 234 (531)
Q Consensus 229 p~~~~~ 234 (531)
|...||
T Consensus 484 P~~pt~ 489 (517)
T PRK10153 484 PGENTL 489 (517)
T ss_pred CCCchH
Confidence 444444
No 193
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.33 E-value=0.19 Score=49.27 Aligned_cols=215 Identities=12% Similarity=0.009 Sum_probs=117.5
Q ss_pred HHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHH----------HccCC
Q 038190 68 LNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCF----------CKMIG 137 (531)
Q Consensus 68 ~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~----------~~~g~ 137 (531)
+++|.++.+ -.|-...|..+.....+.-.++.|...|-+... .+.......|-..+ +--|.
T Consensus 679 ledA~qfiE------dnPHprLWrllAe~Al~Kl~l~tAE~AFVrc~d---Y~Gik~vkrl~~i~s~~~q~aei~~~~g~ 749 (1189)
T KOG2041|consen 679 LEDAIQFIE------DNPHPRLWRLLAEYALFKLALDTAEHAFVRCGD---YAGIKLVKRLRTIHSKEQQRAEISAFYGE 749 (1189)
T ss_pred hHHHHHHHh------cCCchHHHHHHHHHHHHHHhhhhHhhhhhhhcc---ccchhHHHHhhhhhhHHHHhHhHhhhhcc
Confidence 566665554 335667888888877777777777777665533 12221111111111 12378
Q ss_pred cchHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCCCcHHhHHHHHHHHHhcCChhHHHH
Q 038190 138 VSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRV 217 (531)
Q Consensus 138 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 217 (531)
+++|.++|-.|.++. ..|..+.+.||+-.+.++++.= |...+...-..+|+.+...++....|++|.+
T Consensus 750 feeaek~yld~drrD---------LAielr~klgDwfrV~qL~r~g---~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~ 817 (1189)
T KOG2041|consen 750 FEEAEKLYLDADRRD---------LAIELRKKLGDWFRVYQLIRNG---GSDDDDEGKEDAFRNIGETFAEMMEWEEAAK 817 (1189)
T ss_pred hhHhhhhhhccchhh---------hhHHHHHhhhhHHHHHHHHHcc---CCCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888887765542 2456677778877766665331 1111111124578888888888888888888
Q ss_pred HHHHHhhCCCCCCHhhHHHHHHHHHhcCChhhhhcchHHHHHHHHHHHhCCCCCCccccCCHhhHHHHHHHHhcCCCHHH
Q 038190 218 LFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDK 297 (531)
Q Consensus 218 ~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~ 297 (531)
.|..-... ...+.++.+...+++-+. +.+. .+-+....-.+..++...|.-++
T Consensus 818 yY~~~~~~---------e~~~ecly~le~f~~LE~-------la~~-----------Lpe~s~llp~~a~mf~svGMC~q 870 (1189)
T KOG2041|consen 818 YYSYCGDT---------ENQIECLYRLELFGELEV-------LART-----------LPEDSELLPVMADMFTSVGMCDQ 870 (1189)
T ss_pred HHHhccch---------HhHHHHHHHHHhhhhHHH-------HHHh-----------cCcccchHHHHHHHHHhhchHHH
Confidence 77654321 223445554443333222 2222 23344455566677777777777
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 038190 298 AKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVS 339 (531)
Q Consensus 298 a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~ 339 (531)
|.+.|-+ .+. | .+.+..|....++.+|.++-+.
T Consensus 871 AV~a~Lr---~s~-p-----kaAv~tCv~LnQW~~avelaq~ 903 (1189)
T KOG2041|consen 871 AVEAYLR---RSL-P-----KAAVHTCVELNQWGEAVELAQR 903 (1189)
T ss_pred HHHHHHh---ccC-c-----HHHHHHHHHHHHHHHHHHHHHh
Confidence 7665532 211 1 1223445555555555555443
No 194
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.32 E-value=0.13 Score=47.15 Aligned_cols=63 Identities=16% Similarity=0.026 Sum_probs=37.1
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCcchHHHHHHHHHHCCCCCChhhHHHHHH
Q 038190 89 SFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIR 165 (531)
Q Consensus 89 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 165 (531)
+|..+...-...|+.+.|..+++. .|+..-- +..+.+.|+.+.| +.+..+.| .||. +|..|+.
T Consensus 2 S~a~IA~~A~~~GR~~LA~~LL~~------Ep~~~~q---VplLL~m~e~e~A---L~kAi~Sg-D~DL-i~~vLl~ 64 (319)
T PF04840_consen 2 SYAEIARKAYEEGRPKLATKLLEL------EPRASKQ---VPLLLKMGEDELA---LNKAIESG-DTDL-IYLVLLH 64 (319)
T ss_pred CHHHHHHHHHHcChHHHHHHHHHc------CCChHHH---HHHHhcCCchHHH---HHHHHHcC-CccH-HHHHHHH
Confidence 466677777788888888887653 5655322 3444556665555 55666665 3332 4444444
No 195
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.28 E-value=0.054 Score=46.25 Aligned_cols=170 Identities=14% Similarity=0.043 Sum_probs=106.2
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 038190 283 CSIINSLCKDVLVDKAKELFLDMKSRGI--IPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYS 360 (531)
Q Consensus 283 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~ 360 (531)
-.....+...|++.+|...|+.+..... +--....-.++.++.+.|+++.|...++++.+.-+.-...-+...+.+.+
T Consensus 9 Y~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~ 88 (203)
T PF13525_consen 9 YQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLS 88 (203)
T ss_dssp HHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHH
Confidence 3455667789999999999999987621 22244556677889999999999999999887643322222222222221
Q ss_pred -------------hcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHH
Q 038190 361 -------------KIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWE 427 (531)
Q Consensus 361 -------------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 427 (531)
..+...+|...|+.+++. -|+..-..+|...+..+.+. =...--.+...|.+.|.+..|..
T Consensus 89 ~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~--yP~S~y~~~A~~~l~~l~~~----la~~e~~ia~~Y~~~~~y~aA~~ 162 (203)
T PF13525_consen 89 YYKQIPGILRSDRDQTSTRKAIEEFEELIKR--YPNSEYAEEAKKRLAELRNR----LAEHELYIARFYYKRGKYKAAII 162 (203)
T ss_dssp HHHHHHHHH-TT---HHHHHHHHHHHHHHHH---TTSTTHHHHHHHHHHHHHH----HHHHHHHHHHHHHCTT-HHHHHH
T ss_pred HHHhCccchhcccChHHHHHHHHHHHHHHHH--CcCchHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHcccHHHHHH
Confidence 112345677777777763 46666666666655554421 01122346778999999999999
Q ss_pred HHHHhhhCCCCCc----HHHHHHHHHHHHHcCCHHHH
Q 038190 428 LFKKLPRYGPEPN----VVTYTVMICGLCIEGGIEKA 460 (531)
Q Consensus 428 ~~~~~~~~g~~p~----~~~~~~l~~~~~~~g~~~~A 460 (531)
-++.+++. -|+ ......++.+|.+.|..+.|
T Consensus 163 r~~~v~~~--yp~t~~~~~al~~l~~~y~~l~~~~~a 197 (203)
T PF13525_consen 163 RFQYVIEN--YPDTPAAEEALARLAEAYYKLGLKQAA 197 (203)
T ss_dssp HHHHHHHH--STTSHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred HHHHHHHH--CCCCchHHHHHHHHHHHHHHhCChHHH
Confidence 99998874 233 34556778888888887754
No 196
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.27 E-value=0.019 Score=43.64 Aligned_cols=107 Identities=19% Similarity=0.040 Sum_probs=73.0
Q ss_pred HHHHHHccCCHHHHHHHHHHHHhCCCCCC--HhhHHHHHHHHHccCCcchHHHHHHHHHHCCCCC--ChhhHHHHHHHHH
Q 038190 93 LLGALAGKKYYVNFICLSERLNTIGLLPD--FVSLNILMNCFCKMIGVSDAFVALGRILRKVFSP--DVVTLGCLIRGLC 168 (531)
Q Consensus 93 li~~~~~~~~~~~a~~~~~~m~~~g~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~li~~~~ 168 (531)
+..++-..|+.++|+.+|++....|.... ...+-.+...+...|++++|..+++......+.. +......+..++.
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence 34556677899999999999988886544 3356667778888899999999998887763221 2223333445677
Q ss_pred hcCChHHHHHHHHHHHHcCCCCCCCCcHHhHHHHHHHHH
Q 038190 169 MQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLC 207 (531)
Q Consensus 169 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 207 (531)
..|+.++|++.+-..... +...|.--|..|.
T Consensus 87 ~~gr~~eAl~~~l~~la~--------~~~~y~ra~~~ya 117 (120)
T PF12688_consen 87 NLGRPKEALEWLLEALAE--------TLPRYRRAIRFYA 117 (120)
T ss_pred HCCCHHHHHHHHHHHHHH--------HHHHHHHHHHHHH
Confidence 889999998887766542 4445555555554
No 197
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.24 E-value=0.075 Score=42.91 Aligned_cols=134 Identities=16% Similarity=0.102 Sum_probs=103.0
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHH
Q 038190 310 IIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILE 389 (531)
Q Consensus 310 ~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 389 (531)
+.|++..-..|..+....|++.+|...|++...--+.-|....-.+.++....+++..|...++++.+.. |.
T Consensus 85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~--pa------ 156 (251)
T COG4700 85 IAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYN--PA------ 156 (251)
T ss_pred hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcC--Cc------
Confidence 4678777888889999999999999999998875455677788888888899999999999999988754 21
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 038190 390 AAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPD 466 (531)
Q Consensus 390 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 466 (531)
+ .++...-.+.+.|...|.+..|+.-|+..... -|+...-......+.+.|+.++|..-+..
T Consensus 157 -----------~--r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La~qgr~~ea~aq~~~ 218 (251)
T COG4700 157 -----------F--RSPDGHLLFARTLAAQGKYADAESAFEVAISY--YPGPQARIYYAEMLAKQGRLREANAQYVA 218 (251)
T ss_pred -----------c--CCCCchHHHHHHHHhcCCchhHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcchhHHHHHHHH
Confidence 1 13344556788899999999999999999985 56655555555567788877777554433
No 198
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.22 E-value=0.001 Score=45.19 Aligned_cols=51 Identities=16% Similarity=0.091 Sum_probs=34.8
Q ss_pred cCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 038190 65 EVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTI 116 (531)
Q Consensus 65 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 116 (531)
.|++++|+++|+.+....|. +...+..+..+|.+.|++++|..+++++...
T Consensus 4 ~~~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 4 QGDYDEAIELLEKALQRNPD-NPEARLLLAQCYLKQGQYDEAEELLERLLKQ 54 (68)
T ss_dssp TTHHHHHHHHHHHHHHHTTT-SHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred ccCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 35677777777777776665 6666667777777777777777777777655
No 199
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=97.21 E-value=0.094 Score=50.75 Aligned_cols=67 Identities=21% Similarity=0.280 Sum_probs=33.5
Q ss_pred HHHHHHHcCCChHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 038190 411 CLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECLKAIELLHKMA 485 (531)
Q Consensus 411 ~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~i~~~~~a~~~~~~~~ 485 (531)
.+++.....+++++|..+-++..+. .||+ |....+-++...++++|.+.|-+. |+.++|.++++++.
T Consensus 778 siVqlHve~~~W~eAFalAe~hPe~--~~dV--y~pyaqwLAE~DrFeEAqkAfhkA----Gr~~EA~~vLeQLt 844 (1081)
T KOG1538|consen 778 SLVQLHVETQRWDEAFALAEKHPEF--KDDV--YMPYAQWLAENDRFEEAQKAFHKA----GRQREAVQVLEQLT 844 (1081)
T ss_pred HHhhheeecccchHhHhhhhhCccc--cccc--cchHHHHhhhhhhHHHHHHHHHHh----cchHHHHHHHHHhh
Confidence 4556666777777777777766652 3332 223333344444444444444332 33344444444443
No 200
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.17 E-value=0.067 Score=42.90 Aligned_cols=79 Identities=13% Similarity=0.225 Sum_probs=58.4
Q ss_pred HHHHHHHHHHHcCCChHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHH-
Q 038190 407 TVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECLKAIELLHKMA- 485 (531)
Q Consensus 407 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~i~~~~~a~~~~~~~~- 485 (531)
.+...++..+...|++++|..+.+.+.... +-+...|..+|.+|...|+..+|++.|+++.+. +.
T Consensus 63 ~~~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~-------------l~~ 128 (146)
T PF03704_consen 63 DALERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRR-------------LRE 128 (146)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-------------HHH
T ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH-------------HHH
Confidence 467778888999999999999999999852 347889999999999999999999999876553 22
Q ss_pred HcCCCCCHHHHHHH
Q 038190 486 KRYVKPDEITVSIL 499 (531)
Q Consensus 486 ~~~~~~~~~~~~~l 499 (531)
+.|+.|+..+-...
T Consensus 129 elg~~Ps~~~~~l~ 142 (146)
T PF03704_consen 129 ELGIEPSPETRALY 142 (146)
T ss_dssp HHS----HHHHHHH
T ss_pred HhCcCcCHHHHHHH
Confidence 45899998765443
No 201
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.14 E-value=0.19 Score=45.68 Aligned_cols=288 Identities=14% Similarity=0.046 Sum_probs=182.5
Q ss_pred CCcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHH--HHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHH----HHHccC
Q 038190 63 SGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGA--LAGKKYYVNFICLSERLNTIGLLPDFVSLNILMN----CFCKMI 136 (531)
Q Consensus 63 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~--~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~----~~~~~g 136 (531)
.+.|+-..|+++-.+..+. +.-|....-.|+.+ -.-.|+++.|.+-|+.|.. |+++-..=++ ..-+.|
T Consensus 95 agAGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~-----dPEtRllGLRgLyleAqr~G 168 (531)
T COG3898 95 AGAGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLD-----DPETRLLGLRGLYLEAQRLG 168 (531)
T ss_pred hccCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhc-----ChHHHHHhHHHHHHHHHhcc
Confidence 3567889998887776532 23355555555554 3356999999999999984 3334333333 334778
Q ss_pred CcchHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCCCcHH--hHHHHHHHHHh---cCC
Q 038190 137 GVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVI--CYASIIDGLCK---DGF 211 (531)
Q Consensus 137 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~~---~~~ 211 (531)
+.+.|.++-+..-...+. -...+.+.+...+..|+++.|+++++.-....+.. +++. .-..|+.+-.. ..+
T Consensus 169 areaAr~yAe~Aa~~Ap~-l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie---~~~aeR~rAvLLtAkA~s~ldad 244 (531)
T COG3898 169 AREAARHYAERAAEKAPQ-LPWAARATLEARCAAGDWDGALKLVDAQRAAKVIE---KDVAERSRAVLLTAKAMSLLDAD 244 (531)
T ss_pred cHHHHHHHHHHHHhhccC-CchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhc---hhhHHHHHHHHHHHHHHHHhcCC
Confidence 999999888887766432 45688889999999999999999998876543222 2333 22233332221 234
Q ss_pred hhHHHHHHHHHhhCCCCCCHhhH-HHHHHHHHhcCChhhhhcchHHHHHHHHHHHhCCCCCCccccCCHhhHHHHHHHHh
Q 038190 212 VNKVRVLFLDMKGRGIYPDAFVY-NSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLC 290 (531)
Q Consensus 212 ~~~a~~~~~~m~~~g~~p~~~~~-~~li~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~ 290 (531)
...|...-.+..+ +.||..-- .....++.+.|+..++-+ +++.+-+.. ..|++ + .+..+.
T Consensus 245 p~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~-------ilE~aWK~e------PHP~i--a--~lY~~a 305 (531)
T COG3898 245 PASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSK-------ILETAWKAE------PHPDI--A--LLYVRA 305 (531)
T ss_pred hHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhh-------HHHHHHhcC------CChHH--H--HHHHHh
Confidence 5566665555443 34553322 233467888888888888 777777765 44543 2 233445
Q ss_pred cCCCHHHHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH-hcCCHHH
Q 038190 291 KDVLVDKAKELFLDMKSR-GIIP-DVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYS-KIEKVEE 367 (531)
Q Consensus 291 ~~~~~~~a~~~~~~~~~~-~~~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~-~~~~~~~ 367 (531)
+.|+.. ..-++...+. ..+| +....-.+..+....|++..|..--+...+. .|....|-.|.+.-. ..|+-.+
T Consensus 306 r~gdta--~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~--~pres~~lLlAdIeeAetGDqg~ 381 (531)
T COG3898 306 RSGDTA--LDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAARE--APRESAYLLLADIEEAETGDQGK 381 (531)
T ss_pred cCCCcH--HHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhh--CchhhHHHHHHHHHhhccCchHH
Confidence 666532 2222222211 1223 5566667778888889999888877776654 577778877777554 4599999
Q ss_pred HHHHHHHHHhCCCCCC
Q 038190 368 ALSLYGEMISMGVRPD 383 (531)
Q Consensus 368 a~~~~~~~~~~~~~~~ 383 (531)
+...+.+..+.--.|.
T Consensus 382 vR~wlAqav~APrdPa 397 (531)
T COG3898 382 VRQWLAQAVKAPRDPA 397 (531)
T ss_pred HHHHHHHHhcCCCCCc
Confidence 9999888877554444
No 202
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.10 E-value=0.0033 Score=42.10 Aligned_cols=57 Identities=16% Similarity=0.121 Sum_probs=47.2
Q ss_pred HHHHHHcCCChHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 038190 412 LVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEE 469 (531)
Q Consensus 412 l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 469 (531)
+...+...|++++|...|+++++.. +-+...+..+..++...|++++|+..|+++.+
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4677889999999999999999864 22678888999999999999999888877654
No 203
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.08 E-value=0.0033 Score=42.72 Aligned_cols=64 Identities=16% Similarity=0.082 Sum_probs=55.0
Q ss_pred CHHHHHHHHHHHHcCCChHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHcC-CHHHHHHHHHHHHH
Q 038190 405 DLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEG-GIEKAYDLLPDMEE 469 (531)
Q Consensus 405 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~ 469 (531)
+..+|..+...+...|++++|+..|++.++.. +-+...|..+..+|...| ++++|++.+++..+
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 56789999999999999999999999999863 236778899999999999 79999888877654
No 204
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.06 E-value=0.23 Score=45.20 Aligned_cols=300 Identities=13% Similarity=0.034 Sum_probs=180.4
Q ss_pred CHHHHHHHHHHHHHcCCCCChhhHHHHHHHHH--ccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHH--ccCCcchHH
Q 038190 67 ELNDALCFFNYMIHMQPTPFMPSFNSLLGALA--GKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFC--KMIGVSDAF 142 (531)
Q Consensus 67 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~--~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~--~~g~~~~a~ 142 (531)
....+.+.|..-.+ ..-|..|-.++. -.|+-..|.++-.+.... +.-|......|+.+-. -.|+++.|.
T Consensus 68 sP~t~~Ryfr~rKR------drgyqALStGliAagAGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar 140 (531)
T COG3898 68 SPYTARRYFRERKR------DRGYQALSTGLIAAGAGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDAR 140 (531)
T ss_pred CcHHHHHHHHHHHh------hhHHHHHhhhhhhhccCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHH
Confidence 34567777766543 123555554443 567888888877765422 2446666666666543 569999999
Q ss_pred HHHHHHHHCCCCCChh--hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCCCcHHhHHHHHHHHHhcCChhHHHHHHH
Q 038190 143 VALGRILRKVFSPDVV--TLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFL 220 (531)
Q Consensus 143 ~~~~~~~~~~~~~~~~--~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 220 (531)
+-|+.|... |... -...|.-.--+.|+.+.|...-++.-.. .|. -...+..++...|..|+|+.|+++++
T Consensus 141 ~kfeAMl~d---PEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~--Ap~---l~WA~~AtLe~r~~~gdWd~AlkLvd 212 (531)
T COG3898 141 KKFEAMLDD---PETRLLGLRGLYLEAQRLGAREAARHYAERAAEK--APQ---LPWAARATLEARCAAGDWDGALKLVD 212 (531)
T ss_pred HHHHHHhcC---hHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhh--ccC---CchHHHHHHHHHHhcCChHHHHHHHH
Confidence 999999863 3332 2333444456789999999888887765 332 46899999999999999999999999
Q ss_pred HHhhCC-CCCCHhhH--HHHHHHHH---hcCChhhhhcchHHHHHHHHHHHhCCCCCCccccCCHhh-HHHHHHHHhcCC
Q 038190 221 DMKGRG-IYPDAFVY--NSLIRVYC---CAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLS-YCSIINSLCKDV 293 (531)
Q Consensus 221 ~m~~~g-~~p~~~~~--~~li~~~~---~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~-~~~ll~~~~~~~ 293 (531)
.-+... +.++..-- ..|+.+-. -..+...|.. .-.+..+ ..||... -.....++.+.|
T Consensus 213 ~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~-------~A~~a~K--------L~pdlvPaav~AAralf~d~ 277 (531)
T COG3898 213 AQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARD-------DALEANK--------LAPDLVPAAVVAARALFRDG 277 (531)
T ss_pred HHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHH-------HHHHHhh--------cCCccchHHHHHHHHHHhcc
Confidence 876542 34443322 22222211 1122333333 3333222 3455433 333467889999
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-CCCC-CHHHHHHHHHHHHhcCCHHHHHHH
Q 038190 294 LVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESE-GCIP-DTSSYNTLINSYSKIEKVEEALSL 371 (531)
Q Consensus 294 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-g~~p-~~~~~~~li~~~~~~~~~~~a~~~ 371 (531)
+..++-.+++.+-+.. |.+..+. +..+.+.|+.. ..-+++.... .++| +..+.-.+.++-...|++..|..-
T Consensus 278 ~~rKg~~ilE~aWK~e--PHP~ia~--lY~~ar~gdta--~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~ 351 (531)
T COG3898 278 NLRKGSKILETAWKAE--PHPDIAL--LYVRARSGDTA--LDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAK 351 (531)
T ss_pred chhhhhhHHHHHHhcC--CChHHHH--HHHHhcCCCcH--HHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHH
Confidence 9999999999999884 4444333 33456667633 2222222211 1223 455556667777778888776654
Q ss_pred HHHHHhCCCCCC--------------cccHHHHHHHHHHHHhCCCCC
Q 038190 372 YGEMISMGVRPD--------------NSCILEAAELFRTLHNTKFEL 404 (531)
Q Consensus 372 ~~~~~~~~~~~~--------------~~~~~~a~~~~~~~~~~~~~~ 404 (531)
-+..... .|. .|+-.++.+.+.+.++..-.|
T Consensus 352 Aeaa~r~--~pres~~lLlAdIeeAetGDqg~vR~wlAqav~APrdP 396 (531)
T COG3898 352 AEAAARE--APRESAYLLLADIEEAETGDQGKVRQWLAQAVKAPRDP 396 (531)
T ss_pred HHHHhhh--CchhhHHHHHHHHHhhccCchHHHHHHHHHHhcCCCCC
Confidence 4443321 222 356666777777776554444
No 205
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.05 E-value=0.0017 Score=44.13 Aligned_cols=63 Identities=13% Similarity=0.061 Sum_probs=32.7
Q ss_pred hhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccC-CcchHHHHHHHHHH
Q 038190 87 MPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMI-GVSDAFVALGRILR 150 (531)
Q Consensus 87 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g-~~~~a~~~~~~~~~ 150 (531)
...|..+...+...|++++|+..|++.++.. +-+...|..+..++...| ++++|+..+++.++
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 3445555555555555555555555555543 234445555555555555 45555555555544
No 206
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.02 E-value=0.0017 Score=44.06 Aligned_cols=51 Identities=18% Similarity=0.174 Sum_probs=23.9
Q ss_pred cCCcchHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 038190 135 MIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAF 186 (531)
Q Consensus 135 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 186 (531)
.|++++|...|+.+....+. +..++..+..+|.+.|++++|..+++++...
T Consensus 4 ~~~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 4 QGDYDEAIELLEKALQRNPD-NPEARLLLAQCYLKQGQYDEAEELLERLLKQ 54 (68)
T ss_dssp TTHHHHHHHHHHHHHHHTTT-SHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred ccCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 34455555555555444322 4444444555555555555555555555443
No 207
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=97.00 E-value=0.14 Score=49.61 Aligned_cols=141 Identities=12% Similarity=0.055 Sum_probs=81.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHhhh
Q 038190 355 LINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPR 434 (531)
Q Consensus 355 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 434 (531)
..+.+...|+.++|..+.. +.+-.+.++.+-.++... +..+...+..-+.+...+.-|-++|..|-+
T Consensus 709 AAEmLiSaGe~~KAi~i~~---------d~gW~d~lidI~rkld~~----ere~l~~~a~ylk~l~~~gLAaeIF~k~gD 775 (1081)
T KOG1538|consen 709 AAEMLISAGEHVKAIEICG---------DHGWVDMLIDIARKLDKA----EREPLLLCATYLKKLDSPGLAAEIFLKMGD 775 (1081)
T ss_pred HHHHhhcccchhhhhhhhh---------cccHHHHHHHHHhhcchh----hhhHHHHHHHHHhhccccchHHHHHHHhcc
Confidence 3444555666666665432 122333333333333322 445666666666777788888899988764
Q ss_pred CCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChhHHHh
Q 038190 435 YGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMN 514 (531)
Q Consensus 435 ~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~i~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 514 (531)
. ..+++.....++|.+|..+-++..+-+.+.- --+. .+-....-+.-.-.+|.++|+-.||..
T Consensus 776 ~---------ksiVqlHve~~~W~eAFalAe~hPe~~~dVy---~pya-----qwLAE~DrFeEAqkAfhkAGr~~EA~~ 838 (1081)
T KOG1538|consen 776 L---------KSLVQLHVETQRWDEAFALAEKHPEFKDDVY---MPYA-----QWLAENDRFEEAQKAFHKAGRQREAVQ 838 (1081)
T ss_pred H---------HHHhhheeecccchHhHhhhhhCcccccccc---chHH-----HHhhhhhhHHHHHHHHHHhcchHHHHH
Confidence 2 2466777788999999887766544310000 0000 000112224455678889999999999
Q ss_pred hHHHhhhcchh
Q 038190 515 LLPSFLSRNQE 525 (531)
Q Consensus 515 ~~~~~~~~~~~ 525 (531)
+++++......
T Consensus 839 vLeQLtnnav~ 849 (1081)
T KOG1538|consen 839 VLEQLTNNAVA 849 (1081)
T ss_pred HHHHhhhhhhh
Confidence 99988765443
No 208
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=96.98 E-value=0.051 Score=47.74 Aligned_cols=117 Identities=13% Similarity=0.060 Sum_probs=93.2
Q ss_pred CHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcc---CCcchHHH
Q 038190 67 ELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKM---IGVSDAFV 143 (531)
Q Consensus 67 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~---g~~~~a~~ 143 (531)
..+....-++.-+..+|. |...|-.|..+|.+.|++..|..-|.+..+.- ++++..+..+..++... ....++..
T Consensus 137 ~~~~l~a~Le~~L~~nP~-d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ 214 (287)
T COG4235 137 EMEALIARLETHLQQNPG-DAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARA 214 (287)
T ss_pred cHHHHHHHHHHHHHhCCC-CchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHH
Confidence 567777777777777777 88899999999999999999999999988764 56677777666665433 34567888
Q ss_pred HHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 038190 144 ALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAF 186 (531)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 186 (531)
+|+++++..+. |+.+...|...+...|++.+|...|+.|...
T Consensus 215 ll~~al~~D~~-~iral~lLA~~afe~g~~~~A~~~Wq~lL~~ 256 (287)
T COG4235 215 LLRQALALDPA-NIRALSLLAFAAFEQGDYAEAAAAWQMLLDL 256 (287)
T ss_pred HHHHHHhcCCc-cHHHHHHHHHHHHHcccHHHHHHHHHHHHhc
Confidence 99999887543 6777777888899999999999999999876
No 209
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=96.94 E-value=0.0029 Score=42.38 Aligned_cols=52 Identities=15% Similarity=0.032 Sum_probs=20.4
Q ss_pred HHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCcchHHHHHHHHH
Q 038190 97 LAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRIL 149 (531)
Q Consensus 97 ~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 149 (531)
+.+.|++++|+..|+++++.. +-+...+..+..++...|++++|...|+.++
T Consensus 7 ~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~ 58 (65)
T PF13432_consen 7 LYQQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERAL 58 (65)
T ss_dssp HHHCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 333444444444444444332 2233334444444444444444444444443
No 210
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.93 E-value=0.018 Score=50.93 Aligned_cols=100 Identities=15% Similarity=0.061 Sum_probs=68.1
Q ss_pred hHHHHHHHHHccCCcchHHHHHHHHHHCCCCCC--hhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCCCcHHhHHH
Q 038190 124 SLNILMNCFCKMIGVSDAFVALGRILRKVFSPD--VVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYAS 201 (531)
Q Consensus 124 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (531)
.|...+....+.|++++|...|+.+++..+... ..++-.+..+|...|++++|...|+.+... .|+......++-.
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~--yP~s~~~~dAl~k 222 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKN--YPKSPKAADAMFK 222 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCcchhHHHHH
Confidence 455555554566888888888888887643311 245666777888888888888888888765 3332234455666
Q ss_pred HHHHHHhcCChhHHHHHHHHHhhC
Q 038190 202 IIDGLCKDGFVNKVRVLFLDMKGR 225 (531)
Q Consensus 202 l~~~~~~~~~~~~a~~~~~~m~~~ 225 (531)
+...+...|+.++|..+|+.+.+.
T Consensus 223 lg~~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 223 VGVIMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHH
Confidence 667777788888888888877764
No 211
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.82 E-value=0.022 Score=50.49 Aligned_cols=103 Identities=8% Similarity=0.015 Sum_probs=75.1
Q ss_pred HHHHHHHHHHHcCCChHHHHHHHHHhhhCCCCCc----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 038190 407 TVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPN----VVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECLKAIELLH 482 (531)
Q Consensus 407 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~i~~~~~a~~~~~ 482 (531)
..|...+..+.+.|++++|...|+.+++. -|+ +..+..+..+|...|++++|+..|+.+.+.
T Consensus 144 ~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~--yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~------------ 209 (263)
T PRK10803 144 TDYNAAIALVQDKSRQDDAIVAFQNFVKK--YPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKN------------ 209 (263)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH------------
Confidence 44666666667789999999999999985 344 356778888899999999998887766543
Q ss_pred HHHHcCCCCCHHHHHHHHHHHhccCChhHHHhhHHHhhhcchhh
Q 038190 483 KMAKRYVKPDEITVSILEELLNKDENCHECMNLLPSFLSRNQEE 526 (531)
Q Consensus 483 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 526 (531)
-.+-......+-.++.++...|+.++|...++++....+..
T Consensus 210 ---yP~s~~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~yP~s 250 (263)
T PRK10803 210 ---YPKSPKAADAMFKVGVIMQDKGDTAKAKAVYQQVIKKYPGT 250 (263)
T ss_pred ---CCCCcchhHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 00111124556667888889999999999999887765544
No 212
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.80 E-value=0.28 Score=42.11 Aligned_cols=144 Identities=15% Similarity=0.055 Sum_probs=107.0
Q ss_pred hhHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHH---
Q 038190 280 LSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLI--- 356 (531)
Q Consensus 280 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li--- 356 (531)
...+.++..+...|.+.-....+.+..+...+-++.....|...-.+.||.+.|...|++..+..-+.+..+++.++
T Consensus 178 ~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n 257 (366)
T KOG2796|consen 178 RVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMN 257 (366)
T ss_pred HHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhh
Confidence 34567788888888888889999999887767788888999999999999999999999877654444444444443
Q ss_pred --HHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHhhh
Q 038190 357 --NSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPR 434 (531)
Q Consensus 357 --~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 434 (531)
..|.-.+++..|...+.++.... +.|+...|.-.-+..-.|+...|.+.++.|++
T Consensus 258 ~a~i~lg~nn~a~a~r~~~~i~~~D-----------------------~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~ 314 (366)
T KOG2796|consen 258 SAFLHLGQNNFAEAHRFFTEILRMD-----------------------PRNAVANNNKALCLLYLGKLKDALKQLEAMVQ 314 (366)
T ss_pred hhhheecccchHHHHHHHhhccccC-----------------------CCchhhhchHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34556678888888888776543 12556666666666677999999999999998
Q ss_pred CCCCCcHHHHHHHH
Q 038190 435 YGPEPNVVTYTVMI 448 (531)
Q Consensus 435 ~g~~p~~~~~~~l~ 448 (531)
. .|.+.+-++++
T Consensus 315 ~--~P~~~l~es~~ 326 (366)
T KOG2796|consen 315 Q--DPRHYLHESVL 326 (366)
T ss_pred c--CCccchhhhHH
Confidence 4 56666555444
No 213
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.74 E-value=0.0085 Score=41.91 Aligned_cols=63 Identities=16% Similarity=0.101 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHhhhC--CCC---Cc-HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 038190 406 LTVFNCLVDGLCKSWRLRSAWELFKKLPRY--GPE---PN-VVTYTVMICGLCIEGGIEKAYDLLPDME 468 (531)
Q Consensus 406 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--g~~---p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 468 (531)
..+|+.+...|...|++++|+..|++..+. ... |+ ..++..+..+|...|++++|++++++..
T Consensus 5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 5 ANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 457899999999999999999999988752 112 22 5678889999999999999999997654
No 214
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.71 E-value=0.5 Score=43.81 Aligned_cols=175 Identities=13% Similarity=0.033 Sum_probs=104.4
Q ss_pred hHHHHHHHHhcCCCHHHHHHHHHHHHhCC---CCCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHHhcCCCCCHHHHHH
Q 038190 281 SYCSIINSLCKDVLVDKAKELFLDMKSRG---IIPDVVVYSSLIDGYCL---MGRIDDARKLFVSIESEGCIPDTSSYNT 354 (531)
Q Consensus 281 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~ll~~~~~---~g~~~~a~~~~~~~~~~g~~p~~~~~~~ 354 (531)
+...++-+|....+++...++.+.+...- +.-+...-.....++.+ .|+.++|.+++..+......++..+|..
T Consensus 143 iv~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL 222 (374)
T PF13281_consen 143 IVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGL 222 (374)
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHH
Confidence 34466677999999999999999988751 11123333344455666 8999999999999766666678888887
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCC----hHHHHHHH-
Q 038190 355 LINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWR----LRSAWELF- 429 (531)
Q Consensus 355 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----~~~A~~~~- 429 (531)
+...|-. +-......+...+++|+..|.+..+.. ||...--.++..+...|. -.+..++-
T Consensus 223 ~GRIyKD-------------~~~~s~~~d~~~ldkAi~~Y~kgFe~~--~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~ 287 (374)
T PF13281_consen 223 LGRIYKD-------------LFLESNFTDRESLDKAIEWYRKGFEIE--PDYYSGINAATLLMLAGHDFETSEELRKIGV 287 (374)
T ss_pred HHHHHHH-------------HHHHcCccchHHHHHHHHHHHHHHcCC--ccccchHHHHHHHHHcCCcccchHHHHHHHH
Confidence 7766532 111111123334566666666555443 343332222222333332 12233332
Q ss_pred ---HHhhhCC---CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 038190 430 ---KKLPRYG---PEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK 470 (531)
Q Consensus 430 ---~~~~~~g---~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 470 (531)
..+.+.| -..+...+..++.++.-.|++++|.+.+++|...
T Consensus 288 ~l~~llg~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 288 KLSSLLGRKGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred HHHHHHHhhccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 1222233 2345566678888899999999988887776654
No 215
>PRK15331 chaperone protein SicA; Provisional
Probab=96.63 E-value=0.2 Score=39.98 Aligned_cols=64 Identities=9% Similarity=-0.118 Sum_probs=36.5
Q ss_pred CHHHHHHHHHHHHcCCChHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 038190 405 DLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEE 469 (531)
Q Consensus 405 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 469 (531)
|..-|..|..+|-..+++++|...|......+. -|+..+-....++...|+.+.|...|+....
T Consensus 70 n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~-~dp~p~f~agqC~l~l~~~~~A~~~f~~a~~ 133 (165)
T PRK15331 70 NPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK-NDYRPVFFTGQCQLLMRKAAKARQCFELVNE 133 (165)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-CCCCccchHHHHHHHhCCHHHHHHHHHHHHh
Confidence 445556666666666666666666665544322 2444445556666666666666666554443
No 216
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=96.57 E-value=0.055 Score=41.63 Aligned_cols=98 Identities=9% Similarity=0.043 Sum_probs=65.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHH
Q 038190 349 TSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWEL 428 (531)
Q Consensus 349 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 428 (531)
..++..++.++++.|+.+....+++..- |+..+....... .-......|+..+..+++.+|+..|++..|+++
T Consensus 2 e~~~~~ii~al~r~g~~~~i~~~i~~~W--gI~~~~~~~~~~-----~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~ 74 (126)
T PF12921_consen 2 EELLCNIIYALGRSGQLDSIKSYIKSVW--GIDVNGKKKEGD-----YPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKL 74 (126)
T ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHHhc--CCCCCCccccCc-----cCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHH
Confidence 3455566666666666666655554432 222110000000 111345678999999999999999999999999
Q ss_pred HHHhhh-CCCCCcHHHHHHHHHHHHH
Q 038190 429 FKKLPR-YGPEPNVVTYTVMICGLCI 453 (531)
Q Consensus 429 ~~~~~~-~g~~p~~~~~~~l~~~~~~ 453 (531)
.+...+ .+++.+..+|..|+.-+..
T Consensus 75 vd~fs~~Y~I~i~~~~W~~Ll~W~~v 100 (126)
T PF12921_consen 75 VDFFSRKYPIPIPKEFWRRLLEWAYV 100 (126)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 999976 6788788999988875543
No 217
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.52 E-value=1.1 Score=45.30 Aligned_cols=178 Identities=12% Similarity=0.057 Sum_probs=111.2
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHH----HHccCCcchHHHHHHHHHHCCCCCChhhHHHHH
Q 038190 89 SFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNC----FCKMIGVSDAFVALGRILRKVFSPDVVTLGCLI 164 (531)
Q Consensus 89 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~----~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li 164 (531)
....-+..+.+..-++.|+.+...- + .+..+...+... +.+.|++++|...|-+.+.. ++|+ .+|
T Consensus 336 ~le~kL~iL~kK~ly~~Ai~LAk~~---~--~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~s-----~Vi 404 (933)
T KOG2114|consen 336 DLETKLDILFKKNLYKVAINLAKSQ---H--LDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEPS-----EVI 404 (933)
T ss_pred cHHHHHHHHHHhhhHHHHHHHHHhc---C--CCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CChH-----HHH
Confidence 3455666777777788887776543 2 344444444444 45789999999888776543 2322 356
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCCCCCcHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhc
Q 038190 165 RGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCA 244 (531)
Q Consensus 165 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 244 (531)
.-|.......+-..+++.+.+.|.. +..--..|+.+|.+.++.+.-.++.+... .|... .-....+..+.+.
T Consensus 405 ~kfLdaq~IknLt~YLe~L~~~gla-----~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~~--fd~e~al~Ilr~s 476 (933)
T KOG2114|consen 405 KKFLDAQRIKNLTSYLEALHKKGLA-----NSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEWF--FDVETALEILRKS 476 (933)
T ss_pred HHhcCHHHHHHHHHHHHHHHHcccc-----cchhHHHHHHHHHHhcchHHHHHHHhcCC-Cccee--eeHHHHHHHHHHh
Confidence 6667777778888888999888766 45556779999999999998887776655 33221 1134455666666
Q ss_pred CChhhhhcchHHHHHHHHHHHhCCCCCCccccCCHhhHHHHHHHHhcCCCHHHHHHHHHHHH
Q 038190 245 VNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMK 306 (531)
Q Consensus 245 ~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 306 (531)
+-.++|.. +-..... +... +--.+-..+++++|++++..+.
T Consensus 477 nyl~~a~~-------LA~k~~~-----------he~v---l~ille~~~ny~eAl~yi~slp 517 (933)
T KOG2114|consen 477 NYLDEAEL-------LATKFKK-----------HEWV---LDILLEDLHNYEEALRYISSLP 517 (933)
T ss_pred ChHHHHHH-------HHHHhcc-----------CHHH---HHHHHHHhcCHHHHHHHHhcCC
Confidence 55555543 3332211 1222 2333445678888888887653
No 218
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.52 E-value=0.016 Score=46.50 Aligned_cols=73 Identities=21% Similarity=0.276 Sum_probs=54.6
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCCCcHHhHHHHHHHHHhcCChhHHHHHHHHHhh-----CCCCCCHh
Q 038190 158 VTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKG-----RGIYPDAF 232 (531)
Q Consensus 158 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~-----~g~~p~~~ 232 (531)
.+...++..+...|++++|+.+++.+... .| -+...|..+|.+|...|+...|.++|+.+.. .|+.|+..
T Consensus 63 ~~~~~l~~~~~~~~~~~~a~~~~~~~l~~--dP---~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~ 137 (146)
T PF03704_consen 63 DALERLAEALLEAGDYEEALRLLQRALAL--DP---YDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPE 137 (146)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH--ST---T-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HH
T ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHhc--CC---CCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHH
Confidence 35566788888999999999999999987 55 2788999999999999999999999988753 48888876
Q ss_pred hHH
Q 038190 233 VYN 235 (531)
Q Consensus 233 ~~~ 235 (531)
+-.
T Consensus 138 ~~~ 140 (146)
T PF03704_consen 138 TRA 140 (146)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
No 219
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.50 E-value=0.0066 Score=42.47 Aligned_cols=68 Identities=22% Similarity=0.290 Sum_probs=49.9
Q ss_pred hhHHHHHHHHHhcCChhhhhcchHHHHHHHHHHHhCCCCCCccccCC-HhhHHHHHHHHhcCCCHHHHHHHHHHHHh
Q 038190 232 FVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPD-VLSYCSIINSLCKDVLVDKAKELFLDMKS 307 (531)
Q Consensus 232 ~~~~~li~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 307 (531)
.+++.+...|...|++++|+..+++++++.+.+... .|+ ..++..+..++...|++++|++++++..+
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~--------~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDD--------HPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTH--------HHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCC--------CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 456677777888888888888777777774443221 232 66788899999999999999999987654
No 220
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.47 E-value=0.012 Score=40.39 Aligned_cols=55 Identities=18% Similarity=0.123 Sum_probs=26.1
Q ss_pred HHHccCCcchHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 038190 131 CFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAF 186 (531)
Q Consensus 131 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 186 (531)
.|.+.++++.|..+++.++..++. +...+.....++...|++++|...|+.....
T Consensus 4 ~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~ 58 (73)
T PF13371_consen 4 IYLQQEDYEEALEVLERALELDPD-DPELWLQRARCLFQLGRYEEALEDLERALEL 58 (73)
T ss_pred HHHhCCCHHHHHHHHHHHHHhCcc-cchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 344444555555555555444322 4444444444555555555555555554443
No 221
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.46 E-value=0.5 Score=40.69 Aligned_cols=141 Identities=9% Similarity=-0.022 Sum_probs=93.2
Q ss_pred HhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChhhhhcchHHHHHHHHHHHhCCCCCCcccc
Q 038190 197 ICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICH 276 (531)
Q Consensus 197 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~ 276 (531)
...+.++..+...|.+.-...++++..+...+.++.....+.+.-.+.|+.+.+.. .|+...+..+.++. ..
T Consensus 178 ~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~-------yf~~vek~~~kL~~-~q 249 (366)
T KOG2796|consen 178 RVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEK-------YFQDVEKVTQKLDG-LQ 249 (366)
T ss_pred HHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHH-------HHHHHHHHHhhhhc-cc
Confidence 34566777777788888888999998887666678888888888889999888888 66665554421111 11
Q ss_pred CCHhhHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 038190 277 PDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCI 346 (531)
Q Consensus 277 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~ 346 (531)
-...........|.-.+++..|...+.++....-. |+...|.-.-+..-.|+..+|.+..+.|....+.
T Consensus 250 ~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~-~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~ 318 (366)
T KOG2796|consen 250 GKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPR-NAVANNNKALCLLYLGKLKDALKQLEAMVQQDPR 318 (366)
T ss_pred hhHHHHhhhhhheecccchHHHHHHHhhccccCCC-chhhhchHHHHHHHHHHHHHHHHHHHHHhccCCc
Confidence 11222223334556677888888888887766322 3333333333333358999999999999887433
No 222
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.43 E-value=0.018 Score=39.57 Aligned_cols=57 Identities=16% Similarity=0.098 Sum_probs=34.7
Q ss_pred HHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCcchHHHHHHHHHHCC
Q 038190 95 GALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKV 152 (531)
Q Consensus 95 ~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 152 (531)
..|.+.++++.|++.++++...+ +.+...+.....++.+.|+++.|...|+...+.+
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~ 59 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERALELS 59 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHHHHC
Confidence 34556666666666666666554 3355555566666666666666666666666553
No 223
>PRK15331 chaperone protein SicA; Provisional
Probab=96.40 E-value=0.025 Score=45.01 Aligned_cols=92 Identities=8% Similarity=-0.195 Sum_probs=70.7
Q ss_pred HHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCcchHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCC
Q 038190 93 LLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGK 172 (531)
Q Consensus 93 li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 172 (531)
....+-+.|++++|..+|.-+...+ .-+..-|..|..++-..++++.|...|......+.. |....-....+|...|+
T Consensus 43 ~Ay~~y~~Gk~~eA~~~F~~L~~~d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~-dp~p~f~agqC~l~l~~ 120 (165)
T PRK15331 43 HAYEFYNQGRLDEAETFFRFLCIYD-FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKN-DYRPVFFTGQCQLLMRK 120 (165)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccC-CCCccchHHHHHHHhCC
Confidence 3444557899999999999887765 345666777777777888999999998887776543 55556667888888999
Q ss_pred hHHHHHHHHHHHHc
Q 038190 173 FTEASGLFTKFVAF 186 (531)
Q Consensus 173 ~~~a~~~~~~~~~~ 186 (531)
.+.|...|+.....
T Consensus 121 ~~~A~~~f~~a~~~ 134 (165)
T PRK15331 121 AAKARQCFELVNER 134 (165)
T ss_pred HHHHHHHHHHHHhC
Confidence 99999999888873
No 224
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=96.39 E-value=0.074 Score=40.93 Aligned_cols=89 Identities=12% Similarity=0.063 Sum_probs=60.8
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHHcC-----------CCCCCCCcHHhHHHHHHHHHhcCChhHHHHHHHHHhh-C
Q 038190 158 VTLGCLIRGLCMQGKFTEASGLFTKFVAFD-----------CRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKG-R 225 (531)
Q Consensus 158 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~-----------~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~-~ 225 (531)
.++.+++.++++.|+.+....+++..=.-+ ......|+..+..+++.+|+..+++..|.++++...+ .
T Consensus 3 ~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y 82 (126)
T PF12921_consen 3 ELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKY 82 (126)
T ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHc
Confidence 344455555555555555555444332111 1222348999999999999999999999999999875 4
Q ss_pred CCCCCHhhHHHHHHHHHhcCC
Q 038190 226 GIYPDAFVYNSLIRVYCCAVN 246 (531)
Q Consensus 226 g~~p~~~~~~~li~~~~~~~~ 246 (531)
+++.+..+|..|+..+....+
T Consensus 83 ~I~i~~~~W~~Ll~W~~v~s~ 103 (126)
T PF12921_consen 83 PIPIPKEFWRRLLEWAYVLSS 103 (126)
T ss_pred CCCCCHHHHHHHHHHHHHhcC
Confidence 788889999999987665544
No 225
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=96.32 E-value=0.8 Score=41.48 Aligned_cols=142 Identities=13% Similarity=0.153 Sum_probs=93.8
Q ss_pred hhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChhhhhcchHHHHHHHHHHHhCCCCCCccccCCHhhHHHHHHHHhc
Q 038190 212 VNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCK 291 (531)
Q Consensus 212 ~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 291 (531)
+++...+++.|.+.|+.-+..+|-+....... .+..+.......+..+|+.|++..+-+ ..++...+..++.. .
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~-~~~~~~~~~~~ra~~iy~~mKk~H~fL---Ts~~D~~~a~lLA~--~ 151 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEE-EEKEDYDEIIQRAKEIYKEMKKKHPFL---TSPEDYPFAALLAM--T 151 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHh-cccccHHHHHHHHHHHHHHHHHhCccc---cCccchhHHHHHhc--c
Confidence 44566788889999999888777665444433 344445566778888999999877321 34556667766554 3
Q ss_pred CCC----HHHHHHHHHHHHhCCCCCCH--HHHHHHHHHHHhcCC--HHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 038190 292 DVL----VDKAKELFLDMKSRGIIPDV--VVYSSLIDGYCLMGR--IDDARKLFVSIESEGCIPDTSSYNTLINSY 359 (531)
Q Consensus 292 ~~~----~~~a~~~~~~~~~~~~~~~~--~~~~~ll~~~~~~g~--~~~a~~~~~~~~~~g~~p~~~~~~~li~~~ 359 (531)
.++ .+.++.+|+.+.+.|+..+- .....++..+-.... ..++.++++.+.+.|+++....|..+.-..
T Consensus 152 ~~~~e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGlLa 227 (297)
T PF13170_consen 152 SEDVEELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGLLA 227 (297)
T ss_pred cccHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHHHH
Confidence 333 35678888888887766542 333333333222222 457889999999999998888877665433
No 226
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.31 E-value=0.41 Score=42.14 Aligned_cols=143 Identities=16% Similarity=0.106 Sum_probs=73.5
Q ss_pred HHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCcchHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHH
Q 038190 96 ALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTE 175 (531)
Q Consensus 96 ~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 175 (531)
.....|++.+|..+|....... +-+...-..++.+|...|+.+.|..++..+...--.........-|..+.+.....+
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~ 221 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPE 221 (304)
T ss_pred hhhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCC
Confidence 3445666666666666665543 223445555666666666666666666665443211111122223444444444444
Q ss_pred HHHHHHHHHHcCCCCCCCCcHHhHHHHHHHHHhcCChhHHHHHHHHHhhC--CCCCCHhhHHHHHHHHHhcCC
Q 038190 176 ASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGR--GIYPDAFVYNSLIRVYCCAVN 246 (531)
Q Consensus 176 a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~--g~~p~~~~~~~li~~~~~~~~ 246 (531)
...+-.+.-. +|+ |...-..+...+...|+.+.|.+.+-.+..+ |.. |...-..++..+...|.
T Consensus 222 ~~~l~~~~aa---dPd---d~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~-d~~~Rk~lle~f~~~g~ 287 (304)
T COG3118 222 IQDLQRRLAA---DPD---DVEAALALADQLHLVGRNEAALEHLLALLRRDRGFE-DGEARKTLLELFEAFGP 287 (304)
T ss_pred HHHHHHHHHh---CCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccc-CcHHHHHHHHHHHhcCC
Confidence 4444444443 342 5555556666666666666666655444432 333 44444555555554443
No 227
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.17 E-value=1.6 Score=43.58 Aligned_cols=317 Identities=12% Similarity=0.015 Sum_probs=170.5
Q ss_pred hhhhcccCCCCCcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCC---HHHHHHHHHHHHhCCCCCCHhhHHHHH
Q 038190 53 LLKYLSENSKSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKY---YVNFICLSERLNTIGLLPDFVSLNILM 129 (531)
Q Consensus 53 l~~~l~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~---~~~a~~~~~~m~~~g~~~~~~~~~~li 129 (531)
++..|.... .+..|+++-..+...-.. +...|..-...+.+..+ -+.+..+-+++... . .+...|..+.
T Consensus 443 vi~Rl~~r~-----~Y~vaIQva~~l~~p~~~-~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~-~-~~~iSy~~iA 514 (829)
T KOG2280|consen 443 VIDRLVDRH-----LYSVAIQVAKLLNLPESQ-GDRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAK-L-TPGISYAAIA 514 (829)
T ss_pred hhHHHHhcc-----hhHHHHHHHHHhCCcccc-ccHHHHHHHHHHHhccCccchHHHHHHHHHhccc-C-CCceeHHHHH
Confidence 445555544 788888888877431111 13344555555554422 22333333333322 2 3445677777
Q ss_pred HHHHccCCcchHHHHHHHHHHCCCC----CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCCCcHHhHHHHH--
Q 038190 130 NCFCKMIGVSDAFVALGRILRKVFS----PDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASII-- 203 (531)
Q Consensus 130 ~~~~~~g~~~~a~~~~~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~-- 203 (531)
+.....|+++.|..+++.=...+.. .+..-+...+.-....|+.+-...++-.+...- +...|...+
T Consensus 515 ~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~-------~~s~l~~~l~~ 587 (829)
T KOG2280|consen 515 RRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKL-------NRSSLFMTLRN 587 (829)
T ss_pred HHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHH-------HHHHHHHHHHh
Confidence 7777889999988877653322211 122334445556667777777666665554321 111111111
Q ss_pred --------HHHHhc------------CChhHHHHHHH--HH----hhCCCCCCHhhHHHHHHHHHhcCChh---hhhcch
Q 038190 204 --------DGLCKD------------GFVNKVRVLFL--DM----KGRGIYPDAFVYNSLIRVYCCAVNWE---DAKGNT 254 (531)
Q Consensus 204 --------~~~~~~------------~~~~~a~~~~~--~m----~~~g~~p~~~~~~~li~~~~~~~~~~---~a~~~~ 254 (531)
.-+++. ++-.++..-|. .. ...|..|+ ......++.+..... ++.+..
T Consensus 588 ~p~a~~lY~~~~r~~~~~~l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~---lk~~a~~~a~sk~~s~e~ka~ed~ 664 (829)
T KOG2280|consen 588 QPLALSLYRQFMRHQDRATLYDFYNQDDNHQALASFHLQASYAAETIEGRIPA---LKTAANAFAKSKEKSFEAKALEDQ 664 (829)
T ss_pred chhhhHHHHHHHHhhchhhhhhhhhcccchhhhhhhhhhhhhhhhhhcccchh---HHHHHHHHhhhhhhhhHHHHHHHH
Confidence 112221 11111111111 00 00122222 223334444443322 222222
Q ss_pred HHHHHHHHHHHhCCCCCCccccCCHhhHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 038190 255 SAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDAR 334 (531)
Q Consensus 255 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~ 334 (531)
.+-+.+.+.+...-+ ......+.+--+.-+...|+..+|.++-.+.+ .||...|..-+.+++..+++++-+
T Consensus 665 ~kLl~lQ~~Le~q~~-----~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLe 735 (829)
T KOG2280|consen 665 MKLLKLQRTLEDQFG-----GSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELE 735 (829)
T ss_pred HHHHHHHHHHHHHhc-----cccccCcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHH
Confidence 233334444433221 12333455566667777888888888776654 568888888888999989888776
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 038190 335 KLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVD 414 (531)
Q Consensus 335 ~~~~~~~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 414 (531)
++-+... .+.-|.-.+.+|.+.|+.++|.+++.+... +.-.+.
T Consensus 736 kfAkskk------sPIGy~PFVe~c~~~~n~~EA~KYiprv~~-------------------------------l~ekv~ 778 (829)
T KOG2280|consen 736 KFAKSKK------SPIGYLPFVEACLKQGNKDEAKKYIPRVGG-------------------------------LQEKVK 778 (829)
T ss_pred HHHhccC------CCCCchhHHHHHHhcccHHHHhhhhhccCC-------------------------------hHHHHH
Confidence 6654433 356677788999999999999888755421 115677
Q ss_pred HHHcCCChHHHHHHHHHhh
Q 038190 415 GLCKSWRLRSAWELFKKLP 433 (531)
Q Consensus 415 ~~~~~g~~~~A~~~~~~~~ 433 (531)
+|.+.|++.+|.++--+-.
T Consensus 779 ay~~~~~~~eAad~A~~~r 797 (829)
T KOG2280|consen 779 AYLRVGDVKEAADLAAEHR 797 (829)
T ss_pred HHHHhccHHHHHHHHHHhc
Confidence 8888888888877655433
No 228
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.16 E-value=0.12 Score=45.99 Aligned_cols=151 Identities=11% Similarity=0.021 Sum_probs=78.9
Q ss_pred ccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCcchHHHHHHHHHHCCCCCCh----hhHHHHHHHHHhcCChH
Q 038190 99 GKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDV----VTLGCLIRGLCMQGKFT 174 (531)
Q Consensus 99 ~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~li~~~~~~g~~~ 174 (531)
-+|++.+|-..|+++++.- +.|..++...=++|.-.|+.+.-...+++++..- .++. .+...+.-++..+|-++
T Consensus 115 ~~g~~h~a~~~wdklL~d~-PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~w-n~dlp~~sYv~GmyaFgL~E~g~y~ 192 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDDY-PTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKW-NADLPCYSYVHGMYAFGLEECGIYD 192 (491)
T ss_pred ccccccHHHHHHHHHHHhC-chhhhhhhhhhhHHHhccchhhhhhHHHHhcccc-CCCCcHHHHHHHHHHhhHHHhccch
Confidence 4566666666666666542 4455556665666666666666666666665431 1222 22233334445566666
Q ss_pred HHHHHHHHHHHcCCCCCCCCcHHhHHHHHHHHHhcCChhHHHHHHHHHhhC---CCCCCHhhHHHHHHHHHhcCChhhhh
Q 038190 175 EASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGR---GIYPDAFVYNSLIRVYCCAVNWEDAK 251 (531)
Q Consensus 175 ~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~---g~~p~~~~~~~li~~~~~~~~~~~a~ 251 (531)
+|++.-++..+. ++. |..+-.++...+-..|++.++.+++.+-... +--.-...|-...-.+...+.++.|+
T Consensus 193 dAEk~A~ralqi--N~~---D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~al 267 (491)
T KOG2610|consen 193 DAEKQADRALQI--NRF---DCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKAL 267 (491)
T ss_pred hHHHHHHhhccC--CCc---chHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHH
Confidence 666666665544 221 5666666666666666666666665543221 10011122222222344446666666
Q ss_pred cchHH
Q 038190 252 GNTSA 256 (531)
Q Consensus 252 ~~~~~ 256 (531)
+.|+.
T Consensus 268 eIyD~ 272 (491)
T KOG2610|consen 268 EIYDR 272 (491)
T ss_pred HHHHH
Confidence 65554
No 229
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.11 E-value=0.071 Score=49.97 Aligned_cols=63 Identities=21% Similarity=0.125 Sum_probs=56.2
Q ss_pred CHHHHHHHHHHHHcCCChHHHHHHHHHhhhCCCCCcH----HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 038190 405 DLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNV----VTYTVMICGLCIEGGIEKAYDLLPDMEE 469 (531)
Q Consensus 405 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 469 (531)
+...++.+..+|...|++++|+..|++.++. .|+. .+|..+..+|...|+.++|++.+++..+
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL--~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALe 140 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALEL--NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALR 140 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 7788999999999999999999999999984 6664 3589999999999999999999988765
No 230
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=96.08 E-value=0.53 Score=46.01 Aligned_cols=168 Identities=13% Similarity=0.118 Sum_probs=114.4
Q ss_pred hHHHHHHHHhcCCCHHHHHHHHHHHHhCC-CCCCH-----HHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCCHH
Q 038190 281 SYCSIINSLCKDVLVDKAKELFLDMKSRG-IIPDV-----VVYSSLIDGYCL----MGRIDDARKLFVSIESEGCIPDTS 350 (531)
Q Consensus 281 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~-----~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~g~~p~~~ 350 (531)
.+..+++...-.||-+.+++.+....+.+ +.-.. -.|..++..++. ..+.+.|.++++.+.+. -|+..
T Consensus 190 ~~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP~s~ 267 (468)
T PF10300_consen 190 KVLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--YPNSA 267 (468)
T ss_pred HHHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--CCCcH
Confidence 35667888888999999999998876643 22111 223444443333 45788999999999886 46776
Q ss_pred HHHHH-HHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHH
Q 038190 351 SYNTL-INSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELF 429 (531)
Q Consensus 351 ~~~~l-i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 429 (531)
.|... .+.+...|++++|++.|++....... +. ......+--+...+.-.+++++|.+.|
T Consensus 268 lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~------------~~-------Ql~~l~~~El~w~~~~~~~w~~A~~~f 328 (468)
T PF10300_consen 268 LFLFFEGRLERLKGNLEEAIESFERAIESQSE------------WK-------QLHHLCYFELAWCHMFQHDWEEAAEYF 328 (468)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHhccchhh------------HH-------hHHHHHHHHHHHHHHHHchHHHHHHHH
Confidence 66544 34667789999999999976532100 00 113345667888899999999999999
Q ss_pred HHhhhCCCCCcHHHHHHHHH-HHHHcCCH-------HHHHHHHHHHHHH
Q 038190 430 KKLPRYGPEPNVVTYTVMIC-GLCIEGGI-------EKAYDLLPDMEEK 470 (531)
Q Consensus 430 ~~~~~~g~~p~~~~~~~l~~-~~~~~g~~-------~~A~~~~~~~~~~ 470 (531)
.++.+.. .-...+|.-+.. ++...|+. ++|.++|.++...
T Consensus 329 ~~L~~~s-~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l 376 (468)
T PF10300_consen 329 LRLLKES-KWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKL 376 (468)
T ss_pred HHHHhcc-ccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHH
Confidence 9999742 123444444333 34567888 8888888888776
No 231
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.07 E-value=0.12 Score=47.34 Aligned_cols=97 Identities=16% Similarity=0.081 Sum_probs=71.1
Q ss_pred HhhHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 038190 279 VLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINS 358 (531)
Q Consensus 279 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~ 358 (531)
..++..+.-++.+.+++..|+......+..+ ++|....-.-..+|...|+++.|+..|+++++..+. |...-+.|+.+
T Consensus 257 ~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~-Nka~~~el~~l 334 (397)
T KOG0543|consen 257 LACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKALYRRGQALLALGEYDLARDDFQKALKLEPS-NKAARAELIKL 334 (397)
T ss_pred HHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCC-cHHHHHHHHHH
Confidence 4467788889999999999999999998875 447777777788899999999999999999987433 33444444444
Q ss_pred HHhcCCHH-HHHHHHHHHHh
Q 038190 359 YSKIEKVE-EALSLYGEMIS 377 (531)
Q Consensus 359 ~~~~~~~~-~a~~~~~~~~~ 377 (531)
-.+..... ...++|..|..
T Consensus 335 ~~k~~~~~~kekk~y~~mF~ 354 (397)
T KOG0543|consen 335 KQKIREYEEKEKKMYANMFA 354 (397)
T ss_pred HHHHHHHHHHHHHHHHHHhh
Confidence 44444433 33677777755
No 232
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=95.96 E-value=0.59 Score=37.04 Aligned_cols=126 Identities=11% Similarity=0.113 Sum_probs=75.4
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCcchHHHHHHHHHHCCCCCChhhHHHHHHHHHh
Q 038190 90 FNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCM 169 (531)
Q Consensus 90 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 169 (531)
...++..+...+.......+++.+...+ ..+...++.++..|++.. .......+.. ..+......+++.|.+
T Consensus 10 ~~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~------~~~~yd~~~~~~~c~~ 81 (140)
T smart00299 10 VSEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYD-PQKEIERLDN------KSNHYDIEKVGKLCEK 81 (140)
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC-HHHHHHHHHh------ccccCCHHHHHHHHHH
Confidence 3456666666677777777777777766 356667777777777653 2333333331 1233444556777777
Q ss_pred cCChHHHHHHHHHHHHcCCCCCCCCcHHhHHHHHHHHHhc-CChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHH
Q 038190 170 QGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKD-GFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYC 242 (531)
Q Consensus 170 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~ 242 (531)
.+-++++.-++.++.. |...+..+... ++++.|.+++.+-. +...|..++..+.
T Consensus 82 ~~l~~~~~~l~~k~~~-------------~~~Al~~~l~~~~d~~~a~~~~~~~~------~~~lw~~~~~~~l 136 (140)
T smart00299 82 AKLYEEAVELYKKDGN-------------FKDAIVTLIEHLGNYEKAIEYFVKQN------NPELWAEVLKALL 136 (140)
T ss_pred cCcHHHHHHHHHhhcC-------------HHHHHHHHHHcccCHHHHHHHHHhCC------CHHHHHHHHHHHH
Confidence 7777777777766532 22233333333 67777777766521 5556666665554
No 233
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=95.94 E-value=1.2 Score=40.30 Aligned_cols=213 Identities=13% Similarity=0.015 Sum_probs=121.1
Q ss_pred hHHHHHHHHHccCCcchHHHHHHHHHHC--CCCC---ChhhHHHHHHHHHhcCChHHHHHHHHHHHHc-CCCCCCCCcHH
Q 038190 124 SLNILMNCFCKMIGVSDAFVALGRILRK--VFSP---DVVTLGCLIRGLCMQGKFTEASGLFTKFVAF-DCRPNVIPNVI 197 (531)
Q Consensus 124 ~~~~li~~~~~~g~~~~a~~~~~~~~~~--~~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~ 197 (531)
++..+..+.++.|.+++++..--..+.. ..+. -...|..+.+++-+.-++.+++.+-+.-... |..++..+. .
T Consensus 45 ~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~g-q 123 (518)
T KOG1941|consen 45 VLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGG-Q 123 (518)
T ss_pred HhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccc-h
Confidence 4445555566666655554332111110 0011 1234555666666666666776665554432 112211111 2
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHhhCC-----CCCCHhhHHHHHHHHHhcCChhhhhcchHHHHHHHHHHHhCCCCCC
Q 038190 198 CYASIIDGLCKDGFVNKVRVLFLDMKGRG-----IYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELG 272 (531)
Q Consensus 198 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~g-----~~p~~~~~~~li~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~ 272 (531)
..-++..++...+.++++++.|+...... ......++..+-..|.+..+++++.-...+|.++.+...-.+..
T Consensus 124 ~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~-- 201 (518)
T KOG1941|consen 124 VSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWS-- 201 (518)
T ss_pred hhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchh--
Confidence 33446677777788888888888765421 12234567888888899999999888777877776665432200
Q ss_pred ccccCCHhhHHHHHHHHhcCCCHHHHHHHHHHHHh----CCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 038190 273 VICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKS----RGIIP-DVVVYSSLIDGYCLMGRIDDARKLFVSIE 341 (531)
Q Consensus 273 ~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~----~~~~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 341 (531)
..-.....-.|.-++...|....|.+..++..+ .|-.+ -......+.+.|...|+.+.|+.-|+...
T Consensus 202 --~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am 273 (518)
T KOG1941|consen 202 --LKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAM 273 (518)
T ss_pred --HHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHH
Confidence 000011122344566677777777777666544 34222 23345667788999999999988887754
No 234
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=95.80 E-value=0.57 Score=36.58 Aligned_cols=111 Identities=13% Similarity=0.009 Sum_probs=72.9
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh
Q 038190 284 SIINSLCKDVLVDKAKELFLDMKSRG--IIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSK 361 (531)
Q Consensus 284 ~ll~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~ 361 (531)
.-.....+.|++++|.+.|+.+...- -+-....--.++.+|.+.|++++|...++++++..+.-...-|...+.+++.
T Consensus 15 ~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~ 94 (142)
T PF13512_consen 15 QEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSY 94 (142)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHH
Confidence 34555668899999999999988762 1223456677888999999999999999999988665444556666666654
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHh
Q 038190 362 IEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHN 399 (531)
Q Consensus 362 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 399 (531)
-...+. .+..+. +..-|.+....|..-|+.+++
T Consensus 95 ~~~~~~---~~~~~~--~~drD~~~~~~A~~~f~~lv~ 127 (142)
T PF13512_consen 95 YEQDEG---SLQSFF--RSDRDPTPARQAFRDFEQLVR 127 (142)
T ss_pred HHHhhh---HHhhhc--ccccCcHHHHHHHHHHHHHHH
Confidence 433332 222332 344444555555555555543
No 235
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=95.75 E-value=1.5 Score=39.66 Aligned_cols=174 Identities=11% Similarity=0.010 Sum_probs=97.5
Q ss_pred HhcCChhHHHHHHHHHhhCC--CCCCH------hhHHHHHHHHHhcC-ChhhhhcchHHHHHHHHHHHhCCCCCCccccC
Q 038190 207 CKDGFVNKVRVLFLDMKGRG--IYPDA------FVYNSLIRVYCCAV-NWEDAKGNTSAALELHEEFVNGNGELGVICHP 277 (531)
Q Consensus 207 ~~~~~~~~a~~~~~~m~~~g--~~p~~------~~~~~li~~~~~~~-~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~ 277 (531)
.+.|+.+.|..++.+..... ..|+. ..|+.-... ...+ ++++|..-.++|.++++.-.+...........
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l-~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~el 82 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSL-LSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSEL 82 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHH-HHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHH
Confidence 35566677776666665432 22221 122222222 3344 77777777777777775522111100000112
Q ss_pred CHhhHHHHHHHHhcCCCHH---HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHH
Q 038190 278 DVLSYCSIINSLCKDVLVD---KAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNT 354 (531)
Q Consensus 278 ~~~~~~~ll~~~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~ 354 (531)
-..++..++.+|...+..+ +|..+++.+.... .-...++..-+..+.+.++.+.+.+++.+|...-.. ....+..
T Consensus 83 r~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~-~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~-~e~~~~~ 160 (278)
T PF08631_consen 83 RLSILRLLANAYLEWDTYESVEKALNALRLLESEY-GNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDH-SESNFDS 160 (278)
T ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhccc-ccchHHH
Confidence 2346777888888877654 5666776665442 223455555567777789999999999999986221 3345555
Q ss_pred HHHHHH--hcCCHHHHHHHHHHHHhCCCCCC
Q 038190 355 LINSYS--KIEKVEEALSLYGEMISMGVRPD 383 (531)
Q Consensus 355 li~~~~--~~~~~~~a~~~~~~~~~~~~~~~ 383 (531)
++..+. .......|...+..+....+.|.
T Consensus 161 ~l~~i~~l~~~~~~~a~~~ld~~l~~r~~~~ 191 (278)
T PF08631_consen 161 ILHHIKQLAEKSPELAAFCLDYLLLNRFKSS 191 (278)
T ss_pred HHHHHHHHHhhCcHHHHHHHHHHHHHHhCCC
Confidence 555552 22344566677776666555553
No 236
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=95.74 E-value=0.2 Score=43.48 Aligned_cols=102 Identities=18% Similarity=0.161 Sum_probs=75.1
Q ss_pred CHHHHHHHHHHHHc-----CCChHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-HhhHHHHH
Q 038190 405 DLTVFNCLVDGLCK-----SWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK-IRECLKAI 478 (531)
Q Consensus 405 ~~~~~~~l~~~~~~-----~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-i~~~~~a~ 478 (531)
|-.+|-..+..+.. .+.++-.-..++.|.+.|+..|..+|+.|+..+=+..-... .+|++.--+ =...+-++
T Consensus 66 dK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~--nvfQ~~F~HYP~QQ~C~I 143 (406)
T KOG3941|consen 66 DKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQ--NVFQKVFLHYPQQQNCAI 143 (406)
T ss_pred cHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccH--HHHHHHHhhCchhhhHHH
Confidence 55666666666643 45666677778899999999999999999988755432221 222222111 14567789
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHhccCC
Q 038190 479 ELLHKMAKRYVKPDEITVSILEELLNKDEN 508 (531)
Q Consensus 479 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 508 (531)
.++++|...|+.||..+-..|+.++.+.|-
T Consensus 144 ~vLeqME~hGVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 144 KVLEQMEWHGVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred HHHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence 999999999999999999999999999875
No 237
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=95.74 E-value=0.77 Score=36.37 Aligned_cols=127 Identities=15% Similarity=0.133 Sum_probs=82.8
Q ss_pred hHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 038190 281 SYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYS 360 (531)
Q Consensus 281 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~ 360 (531)
....++..+...+.......+++.+...+. .+....+.++..|++.+. .+....+.. . .+......++..|.
T Consensus 9 ~~~~vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~~~-~~ll~~l~~---~---~~~yd~~~~~~~c~ 80 (140)
T smart00299 9 DVSEVVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAKYDP-QKEIERLDN---K---SNHYDIEKVGKLCE 80 (140)
T ss_pred CHHHHHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHHCH-HHHHHHHHh---c---cccCCHHHHHHHHH
Confidence 345677777778888999999998888763 577888999999987643 344444432 1 23344455778888
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcC-CChHHHHHHHHHhhhCCCCC
Q 038190 361 KIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKS-WRLRSAWELFKKLPRYGPEP 439 (531)
Q Consensus 361 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~g~~p 439 (531)
+.+.++++..++.++.. +...+..+... ++++.|.+++.+-.
T Consensus 81 ~~~l~~~~~~l~~k~~~-------------------------------~~~Al~~~l~~~~d~~~a~~~~~~~~------ 123 (140)
T smart00299 81 KAKLYEEAVELYKKDGN-------------------------------FKDAIVTLIEHLGNYEKAIEYFVKQN------ 123 (140)
T ss_pred HcCcHHHHHHHHHhhcC-------------------------------HHHHHHHHHHcccCHHHHHHHHHhCC------
Confidence 88888888888776522 22222333333 77777877776522
Q ss_pred cHHHHHHHHHHHH
Q 038190 440 NVVTYTVMICGLC 452 (531)
Q Consensus 440 ~~~~~~~l~~~~~ 452 (531)
+...|..++..+.
T Consensus 124 ~~~lw~~~~~~~l 136 (140)
T smart00299 124 NPELWAEVLKALL 136 (140)
T ss_pred CHHHHHHHHHHHH
Confidence 5567777766654
No 238
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=95.70 E-value=0.13 Score=44.55 Aligned_cols=34 Identities=15% Similarity=0.034 Sum_probs=21.2
Q ss_pred chHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCC
Q 038190 139 SDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGK 172 (531)
Q Consensus 139 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 172 (531)
+-++.++++|...|+-||..+-..|+.++.+.+-
T Consensus 140 ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 140 NCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred hHHHHHHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence 3456666666666666666666666666666553
No 239
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=95.64 E-value=0.28 Score=37.15 Aligned_cols=87 Identities=10% Similarity=-0.046 Sum_probs=62.8
Q ss_pred cCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHh---hHHHHHHHHHccCCcchH
Q 038190 65 EVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFV---SLNILMNCFCKMIGVSDA 141 (531)
Q Consensus 65 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~---~~~~li~~~~~~g~~~~a 141 (531)
.|+++.|++.|.+.+..-|. ...+||.-..++--+|+.++|++=+++.++..-..... .|..-...|...|+.+.|
T Consensus 56 ~g~Ld~AlE~F~qal~l~P~-raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~dd~A 134 (175)
T KOG4555|consen 56 AGDLDGALELFGQALCLAPE-RASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGNDDAA 134 (175)
T ss_pred ccchHHHHHHHHHHHHhccc-chHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCchHHH
Confidence 45888999998888876555 66788888888888888888888888887653222322 233333456677888888
Q ss_pred HHHHHHHHHCC
Q 038190 142 FVALGRILRKV 152 (531)
Q Consensus 142 ~~~~~~~~~~~ 152 (531)
..-|+..-+.|
T Consensus 135 R~DFe~AA~LG 145 (175)
T KOG4555|consen 135 RADFEAAAQLG 145 (175)
T ss_pred HHhHHHHHHhC
Confidence 88888877776
No 240
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.59 E-value=1.5 Score=38.73 Aligned_cols=145 Identities=10% Similarity=-0.001 Sum_probs=79.9
Q ss_pred CcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCcchHHH
Q 038190 64 GEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFV 143 (531)
Q Consensus 64 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~ 143 (531)
..|++.+|..+|.......+. +...--.+..+|...|+.+.|..++..+...--.........-|..+.+.....+...
T Consensus 146 ~~e~~~~a~~~~~~al~~~~~-~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~~~~ 224 (304)
T COG3118 146 EAEDFGEAAPLLKQALQAAPE-NSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPEIQD 224 (304)
T ss_pred hccchhhHHHHHHHHHHhCcc-cchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCCHHH
Confidence 445777777777777765554 4555566667777777777777777766433211111111223344444444444444
Q ss_pred HHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCCCcHHhHHHHHHHHHhcCChhH
Q 038190 144 ALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNK 214 (531)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 214 (531)
+-...-.. +-|...-..+...+...|+.+.|++.+-.+...+..- .|...-..|+..+.-.|.-+.
T Consensus 225 l~~~~aad--Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~---~d~~~Rk~lle~f~~~g~~Dp 290 (304)
T COG3118 225 LQRRLAAD--PDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGF---EDGEARKTLLELFEAFGPADP 290 (304)
T ss_pred HHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccc---cCcHHHHHHHHHHHhcCCCCH
Confidence 44443332 2255566666677777777777777666665543222 144555556665555554333
No 241
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=95.51 E-value=0.21 Score=46.94 Aligned_cols=64 Identities=16% Similarity=0.001 Sum_probs=52.3
Q ss_pred ChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCH----hhHHHHHHHHHccCCcchHHHHHHHHHHC
Q 038190 86 FMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDF----VSLNILMNCFCKMIGVSDAFVALGRILRK 151 (531)
Q Consensus 86 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~----~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 151 (531)
+...|+.+..+|...|++++|+..|++.++.. |+. .+|..+..+|...|+.++|...++++++.
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~--Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALELN--PNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 56788888888999999999999999888764 442 35888888888888888888888888875
No 242
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=95.50 E-value=2.1 Score=39.81 Aligned_cols=100 Identities=7% Similarity=-0.125 Sum_probs=66.2
Q ss_pred HhhHHHHHHHHHccCCcchHHHHHHHHHHCC---CCCChhhHHHHHHHHHh---cCChHHHHHHHHHHHHcCCCCCCCCc
Q 038190 122 FVSLNILMNCFCKMIGVSDAFVALGRILRKV---FSPDVVTLGCLIRGLCM---QGKFTEASGLFTKFVAFDCRPNVIPN 195 (531)
Q Consensus 122 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~~~~~li~~~~~---~g~~~~a~~~~~~~~~~~~~~~~~~~ 195 (531)
..+...++-.|....+++...++.+.+...- +.-...+--...-++.+ .|+.++|++++..+...... ++
T Consensus 141 ~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~----~~ 216 (374)
T PF13281_consen 141 PDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDEN----PD 216 (374)
T ss_pred hhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCC----CC
Confidence 3345566667888899999999999987651 11122233344556666 89999999999986554323 37
Q ss_pred HHhHHHHHHHHHhc---------CChhHHHHHHHHHhhC
Q 038190 196 VICYASIIDGLCKD---------GFVNKVRVLFLDMKGR 225 (531)
Q Consensus 196 ~~~~~~l~~~~~~~---------~~~~~a~~~~~~m~~~ 225 (531)
..+|..+.+.|-.. ...++|+..|.+.-+.
T Consensus 217 ~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~ 255 (374)
T PF13281_consen 217 PDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEI 255 (374)
T ss_pred hHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcC
Confidence 77888888776432 2366777777766543
No 243
>PRK11906 transcriptional regulator; Provisional
Probab=95.49 E-value=0.94 Score=42.90 Aligned_cols=149 Identities=11% Similarity=-0.014 Sum_probs=101.0
Q ss_pred CCHHHHHHHHHHHH---HcCCCCChhhHHHHHHHHH---------ccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHH
Q 038190 66 VELNDALCFFNYMI---HMQPTPFMPSFNSLLGALA---------GKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFC 133 (531)
Q Consensus 66 g~~~~A~~~~~~~~---~~~~~~~~~~~~~li~~~~---------~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~ 133 (531)
-..+.|+.+|.+.. +.+|. ...+|..+...+. ...+..+|.++.++..+.+ +-|+.+...+..+..
T Consensus 272 ~~~~~Al~lf~ra~~~~~ldp~-~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld-~~Da~a~~~~g~~~~ 349 (458)
T PRK11906 272 ESIYRAMTIFDRLQNKSDIQTL-KTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDIT-TVDGKILAIMGLITG 349 (458)
T ss_pred HHHHHHHHHHHHHhhcccCCcc-cHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHH
Confidence 36788999999998 43332 2334433333222 2345667888888888887 678888888888888
Q ss_pred ccCCcchHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCCCcHHhHHHHHHHHHhcCChh
Q 038190 134 KMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVN 213 (531)
Q Consensus 134 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 213 (531)
-.++++.|..+|++....++. ...+|-.....+.-+|+.++|.+.+++..+. .|.. .-.......+..|+..+ .+
T Consensus 350 ~~~~~~~a~~~f~rA~~L~Pn-~A~~~~~~~~~~~~~G~~~~a~~~i~~alrL--sP~~-~~~~~~~~~~~~~~~~~-~~ 424 (458)
T PRK11906 350 LSGQAKVSHILFEQAKIHSTD-IASLYYYRALVHFHNEKIEEARICIDKSLQL--EPRR-RKAVVIKECVDMYVPNP-LK 424 (458)
T ss_pred hhcchhhHHHHHHHHhhcCCc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc--Cchh-hHHHHHHHHHHHHcCCc-hh
Confidence 888899999999999887543 4556666666777789999999999997765 3311 12333444455666544 56
Q ss_pred HHHHHHHH
Q 038190 214 KVRVLFLD 221 (531)
Q Consensus 214 ~a~~~~~~ 221 (531)
.|+.+|-+
T Consensus 425 ~~~~~~~~ 432 (458)
T PRK11906 425 NNIKLYYK 432 (458)
T ss_pred hhHHHHhh
Confidence 66666644
No 244
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=95.48 E-value=0.84 Score=41.34 Aligned_cols=132 Identities=14% Similarity=0.116 Sum_probs=86.5
Q ss_pred HHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHc--cC----CcchHHHHHHHHHHCCCC---CChhhHHHHHHHHHhcCC-
Q 038190 103 YVNFICLSERLNTIGLLPDFVSLNILMNCFCK--MI----GVSDAFVALGRILRKVFS---PDVVTLGCLIRGLCMQGK- 172 (531)
Q Consensus 103 ~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~--~g----~~~~a~~~~~~~~~~~~~---~~~~~~~~li~~~~~~g~- 172 (531)
+++.+.+++.|.+.|+.-+.++|-+..-.... .. ....+..+|+.|++..+- ++..++..++.. ..++
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 55678899999999999888777664444333 22 356788999999987543 233455545433 3333
Q ss_pred ---hHHHHHHHHHHHHcCCCCCCCCcHHhHHHHHHHHHhc-CC--hhHHHHHHHHHhhCCCCCCHhhHHHHHH
Q 038190 173 ---FTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKD-GF--VNKVRVLFLDMKGRGIYPDAFVYNSLIR 239 (531)
Q Consensus 173 ---~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~--~~~a~~~~~~m~~~g~~p~~~~~~~li~ 239 (531)
.+.+..+|+.+...|...+ |..-+.+-+-++... .. ...+.++++.+.+.|+++....|..+.-
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kg---n~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGl 225 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKG---NDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGL 225 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCC---cHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHH
Confidence 3567788888888787765 443333333333332 22 4478889999999999988877765543
No 245
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=95.46 E-value=1.5 Score=37.92 Aligned_cols=72 Identities=17% Similarity=0.054 Sum_probs=42.1
Q ss_pred HHHccCCHHHHHHHHHHHHhCCCCCC---HhhHHHHHHHHHccCCcchHHHHHHHHHHCCCCCChhhHHHHHHHHH
Q 038190 96 ALAGKKYYVNFICLSERLNTIGLLPD---FVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLC 168 (531)
Q Consensus 96 ~~~~~~~~~~a~~~~~~m~~~g~~~~---~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 168 (531)
.-.+.|++++|.+.|+.+...- +-+ ..+.-.++-++-+.++++.|....++.++.-+......|-..|.+++
T Consensus 43 ~~L~~gn~~~A~~~fe~l~~~~-p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs 117 (254)
T COG4105 43 TELQKGNYEEAIKYFEALDSRH-PFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLS 117 (254)
T ss_pred HHHhcCCHHHHHHHHHHHHHcC-CCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHH
Confidence 3446677777777777776542 222 33444455556677777777777777766544434445555555554
No 246
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=95.38 E-value=1.6 Score=37.76 Aligned_cols=190 Identities=13% Similarity=0.050 Sum_probs=100.1
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCCCcHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHhhHHHH
Q 038190 158 VTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSL 237 (531)
Q Consensus 158 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l 237 (531)
..|+.-+ .-.+.|++++|.+.|+.+... .|...-...+.-.++.++-+.++++.|...+++....-..-...-|..-
T Consensus 36 ~LY~~g~-~~L~~gn~~~A~~~fe~l~~~--~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Y 112 (254)
T COG4105 36 ELYNEGL-TELQKGNYEEAIKYFEALDSR--HPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYY 112 (254)
T ss_pred HHHHHHH-HHHhcCCHHHHHHHHHHHHHc--CCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHH
Confidence 3444333 344678888888888888765 3433334556666777788888888888888877654222222334444
Q ss_pred HHHHHhcCChhhhhcchH---HHHHHHHHHHhCCCCCCccccCCHhhHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCH
Q 038190 238 IRVYCCAVNWEDAKGNTS---AALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDV 314 (531)
Q Consensus 238 i~~~~~~~~~~~a~~~~~---~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 314 (531)
|.+++..-..+...+... +|..-|+.++..- |+. .=...|..-+..+... =.
T Consensus 113 lkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ry--------PnS-------------~Ya~dA~~~i~~~~d~----LA 167 (254)
T COG4105 113 LKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRY--------PNS-------------RYAPDAKARIVKLNDA----LA 167 (254)
T ss_pred HHHHHHhccCCccccCHHHHHHHHHHHHHHHHHC--------CCC-------------cchhhHHHHHHHHHHH----HH
Confidence 555544333333333222 2333333333322 221 1111222221111110 00
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 038190 315 VVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPD---TSSYNTLINSYSKIEKVEEALSLYGEMI 376 (531)
Q Consensus 315 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~---~~~~~~li~~~~~~~~~~~a~~~~~~~~ 376 (531)
.-=..+.+.|.+.|.+..|..-++.|.+. ..-+ ....-.+..+|...|-.++|...-.-+.
T Consensus 168 ~~Em~IaryY~kr~~~~AA~nR~~~v~e~-y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~ 231 (254)
T COG4105 168 GHEMAIARYYLKRGAYVAAINRFEEVLEN-YPDTSAVREALARLEEAYYALGLTDEAKKTAKVLG 231 (254)
T ss_pred HHHHHHHHHHHHhcChHHHHHHHHHHHhc-cccccchHHHHHHHHHHHHHhCChHHHHHHHHHHH
Confidence 00023345678888888888888888776 2212 2344556677888888777766655443
No 247
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=95.34 E-value=0.24 Score=47.66 Aligned_cols=152 Identities=10% Similarity=0.022 Sum_probs=71.3
Q ss_pred ccCCHHHHHHHHH--HHHhCCCCCCHhhHHHHHHHHHccCCcchHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHH
Q 038190 99 GKKYYVNFICLSE--RLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEA 176 (531)
Q Consensus 99 ~~~~~~~a~~~~~--~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 176 (531)
-+++++.+..+.+ ++. ..+ +..-.+.++..+-+.|..+.|+++-. |. ..-.....++|+++.|
T Consensus 273 ~~~d~~~v~~~i~~~~ll-~~i--~~~~~~~i~~fL~~~G~~e~AL~~~~---------D~---~~rFeLAl~lg~L~~A 337 (443)
T PF04053_consen 273 LRGDFEEVLRMIAASNLL-PNI--PKDQGQSIARFLEKKGYPELALQFVT---------DP---DHRFELALQLGNLDIA 337 (443)
T ss_dssp HTT-HHH-----HHHHTG-GG----HHHHHHHHHHHHHTT-HHHHHHHSS----------H---HHHHHHHHHCT-HHHH
T ss_pred HcCChhhhhhhhhhhhhc-ccC--ChhHHHHHHHHHHHCCCHHHHHhhcC---------Ch---HHHhHHHHhcCCHHHH
Confidence 4456666555554 111 111 13345666666666666666655432 21 1234445566666666
Q ss_pred HHHHHHHHHcCCCCCCCCcHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChhhhhcchHH
Q 038190 177 SGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSA 256 (531)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~ 256 (531)
.++.++. .+...|..|.....+.|+++-|.+.|.+... |..++-.|...|+.+.-.+
T Consensus 338 ~~~a~~~----------~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~k---- 394 (443)
T PF04053_consen 338 LEIAKEL----------DDPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSK---- 394 (443)
T ss_dssp HHHCCCC----------STHHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHH----
T ss_pred HHHHHhc----------CcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHH----
Confidence 6654333 1455666777777777777777666666543 3444445555555544333
Q ss_pred HHHHHHHHHhCCCCCCccccCCHhhHHHHHHHHhcCCCHHHHHHHHH
Q 038190 257 ALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFL 303 (531)
Q Consensus 257 a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~ 303 (531)
+.+.....+ -++....++.-.|+.+++.+++.
T Consensus 395 ---l~~~a~~~~------------~~n~af~~~~~lgd~~~cv~lL~ 426 (443)
T PF04053_consen 395 ---LAKIAEERG------------DINIAFQAALLLGDVEECVDLLI 426 (443)
T ss_dssp ---HHHHHHHTT-------------HHHHHHHHHHHT-HHHHHHHHH
T ss_pred ---HHHHHHHcc------------CHHHHHHHHHHcCCHHHHHHHHH
Confidence 333333333 13444444455566665555553
No 248
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=95.29 E-value=2.2 Score=38.75 Aligned_cols=174 Identities=13% Similarity=0.040 Sum_probs=93.5
Q ss_pred hhHHHHHHHHhcCCCHHHHHHHHHHHHhC-CCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-----CCCHH
Q 038190 280 LSYCSIINSLCKDVLVDKAKELFLDMKSR-GIIP---DVVVYSSLIDGYCLMGRIDDARKLFVSIESEGC-----IPDTS 350 (531)
Q Consensus 280 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~-----~p~~~ 350 (531)
..|..+.+++.+.-++.+++.+-+.-... |..| .-....++..++...+.++++.+.|+...+... .....
T Consensus 84 ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElq 163 (518)
T KOG1941|consen 84 EAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQ 163 (518)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeee
Confidence 34555666666666666666665554432 2222 112334455666677778888888877654311 12235
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHh----CCCCCCcccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHH
Q 038190 351 SYNTLINSYSKIEKVEEALSLYGEMIS----MGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAW 426 (531)
Q Consensus 351 ~~~~li~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 426 (531)
++-.|...|.+..++++|.-+..+..+ -++... ..+-.....-.+.-++...|..-.|.
T Consensus 164 vcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~-----------------~~kyr~~~lyhmaValR~~G~LgdA~ 226 (518)
T KOG1941|consen 164 VCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDW-----------------SLKYRAMSLYHMAVALRLLGRLGDAM 226 (518)
T ss_pred hhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCch-----------------hHHHHHHHHHHHHHHHHHhcccccHH
Confidence 677777888888888887766554432 111110 00001112223445566666666666
Q ss_pred HHHHHhhh----CCCCCc-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 038190 427 ELFKKLPR----YGPEPN-VVTYTVMICGLCIEGGIEKAYDLLPDMEEK 470 (531)
Q Consensus 427 ~~~~~~~~----~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 470 (531)
+..++..+ .|-++. ......+.+.|...|+.+.|..-|++....
T Consensus 227 e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~ 275 (518)
T KOG1941|consen 227 ECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAMGT 275 (518)
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHH
Confidence 66665543 232211 233345666677777777776666655443
No 249
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.23 E-value=1.7 Score=37.15 Aligned_cols=212 Identities=13% Similarity=0.019 Sum_probs=97.0
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCcchHHHHHHHHHHCCCCCChhhHHHHHHHHHh
Q 038190 90 FNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCM 169 (531)
Q Consensus 90 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 169 (531)
|..-..+|-..+++++|...+.+..+- ..-+...|+ .. ..++.|.-+..++.+. +--+..|+-....|..
T Consensus 34 yekAAvafRnAk~feKakdcLlkA~~~-yEnnrslfh-AA------KayEqaamLake~~kl--sEvvdl~eKAs~lY~E 103 (308)
T KOG1585|consen 34 YEKAAVAFRNAKKFEKAKDCLLKASKG-YENNRSLFH-AA------KAYEQAAMLAKELSKL--SEVVDLYEKASELYVE 103 (308)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHH-HHhcccHHH-HH------HHHHHHHHHHHHHHHh--HHHHHHHHHHHHHHHH
Confidence 444455666777777777766665431 122222221 11 2234444444444432 1123355556667777
Q ss_pred cCChHHHHHHHHHHHHcCCCCCCCCc--HHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCh
Q 038190 170 QGKFTEASGLFTKFVAFDCRPNVIPN--VICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNW 247 (531)
Q Consensus 170 ~g~~~~a~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~ 247 (531)
+|.++.|-..+++.-.. ..++.|+ ...|.--+......++...|.+++... -..+.+..++
T Consensus 104 ~GspdtAAmaleKAak~--lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~---------------sr~lVrl~kf 166 (308)
T KOG1585|consen 104 CGSPDTAAMALEKAAKA--LENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKC---------------SRVLVRLEKF 166 (308)
T ss_pred hCCcchHHHHHHHHHHH--hhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHh---------------hhHhhhhHHh
Confidence 77777776666665432 1111112 112333333333333333443333332 2233333333
Q ss_pred hhhhcchHHHHHHHHHHHhCCCCCCccccCCHhhHHHHHHHHhcCCCHHHHHHHHHHHHhC---CCCCCHHHHHHHHHHH
Q 038190 248 EDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSR---GIIPDVVVYSSLIDGY 324 (531)
Q Consensus 248 ~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~ll~~~ 324 (531)
+++-..+.+-..+.......+ .--..|...|-.+.-..++..|...++.--+. .-.-+..+...|+.+|
T Consensus 167 ~Eaa~a~lKe~~~~~~~~~y~--------~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay 238 (308)
T KOG1585|consen 167 TEAATAFLKEGVAADKCDAYN--------SQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY 238 (308)
T ss_pred hHHHHHHHHhhhHHHHHhhcc--------cHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh
Confidence 333331111111111111111 11123445555566666777777777763332 1223456667777666
Q ss_pred HhcCCHHHHHHHH
Q 038190 325 CLMGRIDDARKLF 337 (531)
Q Consensus 325 ~~~g~~~~a~~~~ 337 (531)
- .|+.+.+.+++
T Consensus 239 d-~gD~E~~~kvl 250 (308)
T KOG1585|consen 239 D-EGDIEEIKKVL 250 (308)
T ss_pred c-cCCHHHHHHHH
Confidence 4 46666666554
No 250
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.17 E-value=0.45 Score=41.45 Aligned_cols=99 Identities=15% Similarity=0.140 Sum_probs=74.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHH
Q 038190 351 SYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFK 430 (531)
Q Consensus 351 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 430 (531)
.|+.-+.. .+.|++..|...|...++..... .-....+-.|..++...|++++|..+|.
T Consensus 144 ~Y~~A~~~-~ksgdy~~A~~~F~~fi~~YP~s--------------------~~~~nA~yWLGe~~y~qg~y~~Aa~~f~ 202 (262)
T COG1729 144 LYNAALDL-YKSGDYAEAEQAFQAFIKKYPNS--------------------TYTPNAYYWLGESLYAQGDYEDAAYIFA 202 (262)
T ss_pred HHHHHHHH-HHcCCHHHHHHHHHHHHHcCCCC--------------------cccchhHHHHHHHHHhcccchHHHHHHH
Confidence 46655554 45677999999998888754221 1244567779999999999999999999
Q ss_pred HhhhC-CCCCc-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 038190 431 KLPRY-GPEPN-VVTYTVMICGLCIEGGIEKAYDLLPDMEEK 470 (531)
Q Consensus 431 ~~~~~-g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 470 (531)
.+.+. +-.|. +..+--|..+..+.|+.++|...|+++.+.
T Consensus 203 ~~~k~~P~s~KApdallKlg~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 203 RVVKDYPKSPKAPDALLKLGVSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHhCCCCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 99863 22232 467778888899999999999888887765
No 251
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=95.07 E-value=0.4 Score=44.11 Aligned_cols=124 Identities=17% Similarity=0.125 Sum_probs=81.3
Q ss_pred HHHHccCCHHHHHHHHHHHHhC-----CCCC---------CHhhHHHHHHHHHccCCcchHHHHHHHHHHCCCCCChhhH
Q 038190 95 GALAGKKYYVNFICLSERLNTI-----GLLP---------DFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTL 160 (531)
Q Consensus 95 ~~~~~~~~~~~a~~~~~~m~~~-----g~~~---------~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 160 (531)
..|.+.|++..|...|++.+.. +..+ -..++..|.-++.+.+++..|+..-+.++..+. .|+-..
T Consensus 216 n~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~-~N~KAL 294 (397)
T KOG0543|consen 216 NVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDP-NNVKAL 294 (397)
T ss_pred hHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCC-CchhHH
Confidence 4677888888888888875432 1111 123466677777788888888888888887753 366666
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCCCcHHhHHHHHHHHHhcCChhH-HHHHHHHHhh
Q 038190 161 GCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNK-VRVLFLDMKG 224 (531)
Q Consensus 161 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-a~~~~~~m~~ 224 (531)
---..+|...|+++.|...|.++.+. .|+ |-.+-+.|+...-+.....+ ..++|..|..
T Consensus 295 yRrG~A~l~~~e~~~A~~df~ka~k~--~P~---Nka~~~el~~l~~k~~~~~~kekk~y~~mF~ 354 (397)
T KOG0543|consen 295 YRRGQALLALGEYDLARDDFQKALKL--EPS---NKAARAELIKLKQKIREYEEKEKKMYANMFA 354 (397)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHHh--CCC---cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 66677888888888888888888875 443 55555555554444443333 3566666654
No 252
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=95.03 E-value=0.78 Score=35.84 Aligned_cols=78 Identities=21% Similarity=0.083 Sum_probs=53.3
Q ss_pred HHHHHccCCHHHHHHHHHHHHhCCCCC---CHhhHHHHHHHHHccCCcchHHHHHHHHHHCCCCCChhhHHHHHHHHHhc
Q 038190 94 LGALAGKKYYVNFICLSERLNTIGLLP---DFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQ 170 (531)
Q Consensus 94 i~~~~~~~~~~~a~~~~~~m~~~g~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 170 (531)
.....+.|++++|.+.|+.+..+- +. ...+--.|+.+|.+.++++.|...+++.++..+......|-..+.+++..
T Consensus 17 a~~~l~~~~Y~~A~~~le~L~~ry-P~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~ 95 (142)
T PF13512_consen 17 AQEALQKGNYEEAIKQLEALDTRY-PFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYY 95 (142)
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcC-CCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHH
Confidence 344557788888888888887652 22 23355667778888888888888888888876655556666666666554
Q ss_pred CC
Q 038190 171 GK 172 (531)
Q Consensus 171 g~ 172 (531)
..
T Consensus 96 ~~ 97 (142)
T PF13512_consen 96 EQ 97 (142)
T ss_pred HH
Confidence 43
No 253
>PRK11906 transcriptional regulator; Provisional
Probab=94.89 E-value=3 Score=39.70 Aligned_cols=151 Identities=11% Similarity=0.067 Sum_probs=100.3
Q ss_pred hhH--HHHHHHHHcc-----CCHHHHHHHHHHHHhC-CCCCC-HhhHHHHHHHHHcc---------CCcchHHHHHHHHH
Q 038190 88 PSF--NSLLGALAGK-----KYYVNFICLSERLNTI-GLLPD-FVSLNILMNCFCKM---------IGVSDAFVALGRIL 149 (531)
Q Consensus 88 ~~~--~~li~~~~~~-----~~~~~a~~~~~~m~~~-g~~~~-~~~~~~li~~~~~~---------g~~~~a~~~~~~~~ 149 (531)
..| ...+++.... -+.+.|+.+|.+.... .+.|+ ...|..+..++... .+..+|...-+...
T Consensus 252 ~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAv 331 (458)
T PRK11906 252 NHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVS 331 (458)
T ss_pred cchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence 677 7777766542 2467889999999822 12343 44555555444322 23456677777888
Q ss_pred HCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCCCcHHhHHHHHHHHHhcCChhHHHHHHHHHhhCC-CC
Q 038190 150 RKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRG-IY 228 (531)
Q Consensus 150 ~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g-~~ 228 (531)
+.+.. |..+...+..++.-.++++.|..+|++.... .|+ ...+|....-.+.-.|+.++|.+.+++..+.. ..
T Consensus 332 eld~~-Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L--~Pn---~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~ 405 (458)
T PRK11906 332 DITTV-DGKILAIMGLITGLSGQAKVSHILFEQAKIH--STD---IASLYYYRALVHFHNEKIEEARICIDKSLQLEPRR 405 (458)
T ss_pred hcCCC-CHHHHHHHHHHHHhhcchhhHHHHHHHHhhc--CCc---cHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchh
Confidence 87644 7888888888888889999999999999887 553 45666666667778899999999999966542 12
Q ss_pred CCHhhHHHHHHHHHhc
Q 038190 229 PDAFVYNSLIRVYCCA 244 (531)
Q Consensus 229 p~~~~~~~li~~~~~~ 244 (531)
.-.......++.|+..
T Consensus 406 ~~~~~~~~~~~~~~~~ 421 (458)
T PRK11906 406 RKAVVIKECVDMYVPN 421 (458)
T ss_pred hHHHHHHHHHHHHcCC
Confidence 1223333444455543
No 254
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=94.70 E-value=1.4 Score=33.58 Aligned_cols=138 Identities=14% Similarity=0.119 Sum_probs=84.1
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCCCCCcHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHhh---HHHHHHHHHh
Q 038190 167 LCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFV---YNSLIRVYCC 243 (531)
Q Consensus 167 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~---~~~li~~~~~ 243 (531)
+.-.|..++..++..+..... +..-+|.+|--....-+-+-..++++.+-+. .|... ...++.+|..
T Consensus 12 ~ildG~V~qGveii~k~v~Ss-------ni~E~NWvICNiiDaa~C~yvv~~LdsIGki---FDis~C~NlKrVi~C~~~ 81 (161)
T PF09205_consen 12 RILDGDVKQGVEIIEKTVNSS-------NIKEYNWVICNIIDAADCDYVVETLDSIGKI---FDISKCGNLKRVIECYAK 81 (161)
T ss_dssp HHHTT-HHHHHHHHHHHHHHS--------HHHHTHHHHHHHHH--HHHHHHHHHHHGGG---S-GGG-S-THHHHHHHHH
T ss_pred HHHhchHHHHHHHHHHHcCcC-------CccccceeeeecchhhchhHHHHHHHHHhhh---cCchhhcchHHHHHHHHH
Confidence 344688888888888887641 4556666766666666666666666665442 23222 2334444443
Q ss_pred cCChhhhhcchHHHHHHHHHHHhCCCCCCccccCCHhhHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 038190 244 AVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDG 323 (531)
Q Consensus 244 ~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 323 (531)
.+. +...+...+..+...|+-+.-.+++..+.+. -.+++.....+..+
T Consensus 82 ~n~-------------------------------~se~vD~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~A 129 (161)
T PF09205_consen 82 RNK-------------------------------LSEYVDLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANA 129 (161)
T ss_dssp TT----------------------------------HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHH
T ss_pred hcc-------------------------------hHHHHHHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHH
Confidence 332 2334555677788888888888888888763 36678888888889
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCC
Q 038190 324 YCLMGRIDDARKLFVSIESEGCI 346 (531)
Q Consensus 324 ~~~~g~~~~a~~~~~~~~~~g~~ 346 (531)
|.+.|+..++.+++.+.-+.|++
T Consensus 130 y~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 130 YKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp HHHTT-HHHHHHHHHHHHHTT-H
T ss_pred HHHhcchhhHHHHHHHHHHhchH
Confidence 99999999999999888887754
No 255
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=94.60 E-value=0.6 Score=41.35 Aligned_cols=86 Identities=14% Similarity=0.195 Sum_probs=71.2
Q ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 038190 406 LTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECLKAIELLHKMA 485 (531)
Q Consensus 406 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~i~~~~~a~~~~~~~~ 485 (531)
..++..++..+...|+.+.+...++++.... +-+...|..++.+|.+.|+...|+..|+++.+. .+.
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~------------~~e 219 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKT------------LAE 219 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHH------------hhh
Confidence 3578889999999999999999999999853 347889999999999999999999999887653 345
Q ss_pred HcCCCCCHHHHHHHHHHHh
Q 038190 486 KRYVKPDEITVSILEELLN 504 (531)
Q Consensus 486 ~~~~~~~~~~~~~l~~~~~ 504 (531)
+.|+.|...+...+.....
T Consensus 220 dlgi~P~~~~~~~y~~~~~ 238 (280)
T COG3629 220 ELGIDPAPELRALYEEILR 238 (280)
T ss_pred hcCCCccHHHHHHHHHHhc
Confidence 6788888887777766643
No 256
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.58 E-value=6.1 Score=40.31 Aligned_cols=43 Identities=12% Similarity=0.124 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHhh
Q 038190 387 ILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLP 433 (531)
Q Consensus 387 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 433 (531)
.+.++.+.+...+. ++..|..++..+++.+.++...++..+.+
T Consensus 721 ~E~~it~~~~~g~~----~p~l~~~~L~yF~~~~~i~~~~~~v~~vl 763 (933)
T KOG2114|consen 721 PETVITLCERLGKE----DPSLWLHALKYFVSEESIEDCYEIVYKVL 763 (933)
T ss_pred hHHHHHHHHHhCcc----ChHHHHHHHHHHhhhcchhhHHHHHHHHH
Confidence 34444444443333 67788888888888886666555544443
No 257
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=94.50 E-value=0.16 Score=30.55 Aligned_cols=28 Identities=25% Similarity=0.249 Sum_probs=17.3
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 038190 159 TLGCLIRGLCMQGKFTEASGLFTKFVAF 186 (531)
Q Consensus 159 ~~~~li~~~~~~g~~~~a~~~~~~~~~~ 186 (531)
++..+...|.+.|++++|+++|+++++.
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~ 30 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALAL 30 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4455566666666666666666666654
No 258
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=94.48 E-value=0.52 Score=45.38 Aligned_cols=132 Identities=18% Similarity=0.119 Sum_probs=86.7
Q ss_pred hhHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 038190 280 LSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSY 359 (531)
Q Consensus 280 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~ 359 (531)
.-.+.++..+.+.|-.+.|+.+...-. .-.....+.|+++.|.++.+++ .+...|..|....
T Consensus 296 ~~~~~i~~fL~~~G~~e~AL~~~~D~~------------~rFeLAl~lg~L~~A~~~a~~~------~~~~~W~~Lg~~A 357 (443)
T PF04053_consen 296 DQGQSIARFLEKKGYPELALQFVTDPD------------HRFELALQLGNLDIALEIAKEL------DDPEKWKQLGDEA 357 (443)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHSS-HH------------HHHHHHHHCT-HHHHHHHCCCC------STHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHCCCHHHHHhhcCChH------------HHhHHHHhcCCHHHHHHHHHhc------CcHHHHHHHHHHH
Confidence 346777777888888888887754322 1244566788888887765433 3677888888888
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHhhhCCCCC
Q 038190 360 SKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEP 439 (531)
Q Consensus 360 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p 439 (531)
.+.|+++-|.+.|++.. -|..|+-.|.-.|+.+.-.++.+.....|
T Consensus 358 L~~g~~~lAe~c~~k~~-------------------------------d~~~L~lLy~~~g~~~~L~kl~~~a~~~~--- 403 (443)
T PF04053_consen 358 LRQGNIELAEECYQKAK-------------------------------DFSGLLLLYSSTGDREKLSKLAKIAEERG--- 403 (443)
T ss_dssp HHTTBHHHHHHHHHHCT--------------------------------HHHHHHHHHHCT-HHHHHHHHHHHHHTT---
T ss_pred HHcCCHHHHHHHHHhhc-------------------------------CccccHHHHHHhCCHHHHHHHHHHHHHcc---
Confidence 88888888888887643 35667777788888777777776666543
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 038190 440 NVVTYTVMICGLCIEGGIEKAYDLLPD 466 (531)
Q Consensus 440 ~~~~~~~l~~~~~~~g~~~~A~~~~~~ 466 (531)
-++....++.-.|+.++.++++.+
T Consensus 404 ---~~n~af~~~~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 404 ---DINIAFQAALLLGDVEECVDLLIE 427 (443)
T ss_dssp ----HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred ---CHHHHHHHHHHcCCHHHHHHHHHH
Confidence 245555566667777777666644
No 259
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=94.43 E-value=0.82 Score=34.72 Aligned_cols=91 Identities=12% Similarity=-0.068 Sum_probs=61.9
Q ss_pred HHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCcchHHHHHHHHHHCCCCCChhhHHH---HHHHHHhcCC
Q 038190 96 ALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGC---LIRGLCMQGK 172 (531)
Q Consensus 96 ~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~---li~~~~~~g~ 172 (531)
+++..|+++.|++.|.+.+..- +-....||.-..++.-.|+.++|++-+++.++..-..+...+.+ -...|-..|+
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~-P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLA-PERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhc-ccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCc
Confidence 5667788888888888877653 45677788888888888888888888887776532223333322 2334556677
Q ss_pred hHHHHHHHHHHHHcC
Q 038190 173 FTEASGLFTKFVAFD 187 (531)
Q Consensus 173 ~~~a~~~~~~~~~~~ 187 (531)
.+.|..-|+...+.|
T Consensus 131 dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 131 DDAARADFEAAAQLG 145 (175)
T ss_pred hHHHHHhHHHHHHhC
Confidence 777777777766654
No 260
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=94.04 E-value=8 Score=39.50 Aligned_cols=62 Identities=6% Similarity=-0.007 Sum_probs=36.5
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCC-------cchHHHHHHHHHHCC
Q 038190 89 SFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIG-------VSDAFVALGRILRKV 152 (531)
Q Consensus 89 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~-------~~~a~~~~~~~~~~~ 152 (531)
.| .+|-.|.+.|++++|.++....... .......+...+..|....+ -+....-|++..+..
T Consensus 114 ~W-a~Iyy~LR~G~~~~A~~~~~~~~~~-~~~~~~~f~~~l~~~~~s~~~~l~~~~~~~l~~ey~~~~r~~ 182 (613)
T PF04097_consen 114 IW-ALIYYCLRCGDYDEALEVANENRNQ-FQKIERSFPTYLKAYASSPDRRLPPELRDKLKLEYNQRIRNS 182 (613)
T ss_dssp HH-HHHHHHHTTT-HHHHHHHHHHTGGG-S-TTTTHHHHHHHHCTTTTSS---TCCCHHHHHHHHHHTTT-
T ss_pred cH-HHHHHHHhcCCHHHHHHHHHHhhhh-hcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhcCC
Confidence 44 3466778999999999888554433 34455667777777766432 224445556555543
No 261
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.94 E-value=0.91 Score=39.62 Aligned_cols=99 Identities=16% Similarity=0.130 Sum_probs=66.3
Q ss_pred hHHHHHHHHHccCCcchHHHHHHHHHHCCCCC--ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCCCcHHhHHH
Q 038190 124 SLNILMNCFCKMIGVSDAFVALGRILRKVFSP--DVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYAS 201 (531)
Q Consensus 124 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (531)
.|+..+..+ +.|++..|...|...++..+.- ....+--|..++...|+++.|..+|..+.+. .|....-..++--
T Consensus 144 ~Y~~A~~~~-ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~--~P~s~KApdallK 220 (262)
T COG1729 144 LYNAALDLY-KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKD--YPKSPKAPDALLK 220 (262)
T ss_pred HHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHh--CCCCCCChHHHHH
Confidence 466555544 4567888888888877764331 1223334677788888888888888887775 3333334456667
Q ss_pred HHHHHHhcCChhHHHHHHHHHhhC
Q 038190 202 IIDGLCKDGFVNKVRVLFLDMKGR 225 (531)
Q Consensus 202 l~~~~~~~~~~~~a~~~~~~m~~~ 225 (531)
|.....+.|+.++|..+|+++.+.
T Consensus 221 lg~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 221 LGVSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHH
Confidence 777777888888888888887765
No 262
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.86 E-value=2.9 Score=33.75 Aligned_cols=129 Identities=10% Similarity=0.046 Sum_probs=74.9
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHhhhCCCCC
Q 038190 360 SKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEP 439 (531)
Q Consensus 360 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p 439 (531)
.+.+..++|+.-|..+.+.|...- .+..--.........|+...|...|+++-...-.|
T Consensus 69 A~~~k~d~Alaaf~~lektg~g~Y---------------------pvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P 127 (221)
T COG4649 69 AQENKTDDALAAFTDLEKTGYGSY---------------------PVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIP 127 (221)
T ss_pred HHcCCchHHHHHHHHHHhcCCCcc---------------------hHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCc
Confidence 456777888888888777654320 11122223444567888889999998887643333
Q ss_pred cHH-HHHHHH--HHHHHcCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChhHHHhhH
Q 038190 440 NVV-TYTVMI--CGLCIEGGIEKAYDLLPDMEEKIRECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLL 516 (531)
Q Consensus 440 ~~~-~~~~l~--~~~~~~g~~~~A~~~~~~~~~~i~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 516 (531)
-.. -...|= ..+..+|.+++.....+.+.. .+-+--...-..|.-+-.+.|++.+|..+|
T Consensus 128 ~~~rd~ARlraa~lLvD~gsy~dV~srvepLa~-----------------d~n~mR~sArEALglAa~kagd~a~A~~~F 190 (221)
T COG4649 128 QIGRDLARLRAAYLLVDNGSYDDVSSRVEPLAG-----------------DGNPMRHSAREALGLAAYKAGDFAKAKSWF 190 (221)
T ss_pred chhhHHHHHHHHHHHhccccHHHHHHHhhhccC-----------------CCChhHHHHHHHHhHHHHhccchHHHHHHH
Confidence 322 111121 234567777766544433221 122222344566777778888888888888
Q ss_pred HHhhhcchhh
Q 038190 517 PSFLSRNQEE 526 (531)
Q Consensus 517 ~~~~~~~~~~ 526 (531)
+.+......|
T Consensus 191 ~qia~Da~ap 200 (221)
T COG4649 191 VQIANDAQAP 200 (221)
T ss_pred HHHHccccCc
Confidence 8877755444
No 263
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.83 E-value=3.4 Score=37.22 Aligned_cols=152 Identities=13% Similarity=0.016 Sum_probs=80.9
Q ss_pred hcCChHHHHHHHHHHHHcCCCCCCCCcHHhHHHHHHHHHhcCChhHHHHHHHHHhhC---CCCCCHhhHHHHHHHHHhcC
Q 038190 169 MQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGR---GIYPDAFVYNSLIRVYCCAV 245 (531)
Q Consensus 169 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~---g~~p~~~~~~~li~~~~~~~ 245 (531)
..|++.+|-..++++... .| .|..+++-.-.+|.-.|+.+.-...++++... +++-.+..-....-++...|
T Consensus 115 ~~g~~h~a~~~wdklL~d--~P---tDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g 189 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDD--YP---TDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECG 189 (491)
T ss_pred ccccccHHHHHHHHHHHh--Cc---hhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhc
Confidence 456666666666776654 33 26666666667777777777777777666543 22211222222333444556
Q ss_pred ChhhhhcchHHHHHHHHHHHhCCCCCCccccCCHhhHHHHHHHHhcCCCHHHHHHHHHHHHhC---CCCCCHHHHHHHHH
Q 038190 246 NWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSR---GIIPDVVVYSSLID 322 (531)
Q Consensus 246 ~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~ll~ 322 (531)
-+++|++..++|++ . .+.|.-+-.+....+...|+..++.+...+-... +--.-...|-...-
T Consensus 190 ~y~dAEk~A~ralq-------i-------N~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al 255 (491)
T KOG2610|consen 190 IYDDAEKQADRALQ-------I-------NRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTAL 255 (491)
T ss_pred cchhHHHHHHhhcc-------C-------CCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHH
Confidence 66666663333333 2 2345555666666666777777776655443221 00001122333333
Q ss_pred HHHhcCCHHHHHHHHHH
Q 038190 323 GYCLMGRIDDARKLFVS 339 (531)
Q Consensus 323 ~~~~~g~~~~a~~~~~~ 339 (531)
.+...+.++.|.++|+.
T Consensus 256 ~~iE~aeye~aleIyD~ 272 (491)
T KOG2610|consen 256 FHIEGAEYEKALEIYDR 272 (491)
T ss_pred hhhcccchhHHHHHHHH
Confidence 45556777777777765
No 264
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=93.79 E-value=0.18 Score=30.33 Aligned_cols=28 Identities=14% Similarity=-0.064 Sum_probs=15.9
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 038190 89 SFNSLLGALAGKKYYVNFICLSERLNTI 116 (531)
Q Consensus 89 ~~~~li~~~~~~~~~~~a~~~~~~m~~~ 116 (531)
+|..+..+|.+.|++++|.++|+++++.
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~ 30 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALAL 30 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3445555555556666666666655554
No 265
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=93.79 E-value=4.2 Score=38.95 Aligned_cols=77 Identities=17% Similarity=0.208 Sum_probs=54.7
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCCCcHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCC-CHhhHHHH
Q 038190 159 TLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYP-DAFVYNSL 237 (531)
Q Consensus 159 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~l 237 (531)
+-..+..++-+.|+.++|++.|.+|.+.. |. .....+...|+.++...+.+.++..++.+..+...+. -...|+..
T Consensus 261 ~KrRLAmCarklGr~~EAIk~~rdLlke~--p~-~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaA 337 (539)
T PF04184_consen 261 AKRRLAMCARKLGRLREAIKMFRDLLKEF--PN-LDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAA 337 (539)
T ss_pred hHHHHHHHHHHhCChHHHHHHHHHHHhhC--Cc-cchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHH
Confidence 33456677778899999999999998752 21 1145578889999999999999999999876532221 23445544
Q ss_pred H
Q 038190 238 I 238 (531)
Q Consensus 238 i 238 (531)
+
T Consensus 338 L 338 (539)
T PF04184_consen 338 L 338 (539)
T ss_pred H
Confidence 3
No 266
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=93.64 E-value=5.3 Score=36.10 Aligned_cols=162 Identities=14% Similarity=0.043 Sum_probs=98.5
Q ss_pred CcCCHHHHHHHHHHHHHcC--CCCCh------hhHHHHHHHHHccCCHHHHHHHHHHHHhC--------CCCCCH-----
Q 038190 64 GEVELNDALCFFNYMIHMQ--PTPFM------PSFNSLLGALAGKKYYVNFICLSERLNTI--------GLLPDF----- 122 (531)
Q Consensus 64 ~~g~~~~A~~~~~~~~~~~--~~~~~------~~~~~li~~~~~~~~~~~a~~~~~~m~~~--------g~~~~~----- 122 (531)
.+|+++.|..++.++.... ..|+. ..||.-...+.+..+++.|...+++..+. ...++.
T Consensus 5 ~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~ 84 (278)
T PF08631_consen 5 KQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRL 84 (278)
T ss_pred hhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHH
Confidence 4679999999999987643 22322 13444444444433888887777766433 122332
Q ss_pred hhHHHHHHHHHccCCcc---hHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCCCcHHhH
Q 038190 123 VSLNILMNCFCKMIGVS---DAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICY 199 (531)
Q Consensus 123 ~~~~~li~~~~~~g~~~---~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 199 (531)
.++..++.+|...+..+ .|..+++.+.+.... ...++..-+..+.+.++.+.+.+.+.+|+..-.. ....+
T Consensus 85 ~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~-~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~-----~e~~~ 158 (278)
T PF08631_consen 85 SILRLLANAYLEWDTYESVEKALNALRLLESEYGN-KPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDH-----SESNF 158 (278)
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCC-CcHHHHHHHHHHhccCChhHHHHHHHHHHHhccc-----ccchH
Confidence 35667777887777654 455666666554332 3556656677777789999999999999975221 22345
Q ss_pred HHHHHHH---HhcCChhHHHHHHHHHhhCCCCCCHh
Q 038190 200 ASIIDGL---CKDGFVNKVRVLFLDMKGRGIYPDAF 232 (531)
Q Consensus 200 ~~l~~~~---~~~~~~~~a~~~~~~m~~~g~~p~~~ 232 (531)
...+..+ ... ....|...++.+....+.|...
T Consensus 159 ~~~l~~i~~l~~~-~~~~a~~~ld~~l~~r~~~~~~ 193 (278)
T PF08631_consen 159 DSILHHIKQLAEK-SPELAAFCLDYLLLNRFKSSED 193 (278)
T ss_pred HHHHHHHHHHHhh-CcHHHHHHHHHHHHHHhCCChh
Confidence 5555444 333 3455666666666554555543
No 267
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=93.56 E-value=6.7 Score=36.99 Aligned_cols=95 Identities=21% Similarity=0.426 Sum_probs=66.6
Q ss_pred hhHHHHHHHHhcCCCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHH-HHHHH
Q 038190 280 LSYCSIINSLCKDVLVDKAKELFLDMKSRG-IIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSY-NTLIN 357 (531)
Q Consensus 280 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~-~~li~ 357 (531)
.+|+..++.-.+....+.|..+|-+..+.| +.+++..++++|..++ .|+...|..+|+--... .||...| +..+.
T Consensus 398 ~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~--f~d~~~y~~kyl~ 474 (660)
T COG5107 398 FVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK--FPDSTLYKEKYLL 474 (660)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh--CCCchHHHHHHHH
Confidence 456677777777777888888888888877 6677788888888666 47777888888764433 2444444 34555
Q ss_pred HHHhcCCHHHHHHHHHHHHh
Q 038190 358 SYSKIEKVEEALSLYGEMIS 377 (531)
Q Consensus 358 ~~~~~~~~~~a~~~~~~~~~ 377 (531)
.+...++-+.|..+|+..++
T Consensus 475 fLi~inde~naraLFetsv~ 494 (660)
T COG5107 475 FLIRINDEENARALFETSVE 494 (660)
T ss_pred HHHHhCcHHHHHHHHHHhHH
Confidence 66677888888888875543
No 268
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=93.42 E-value=3.6 Score=33.43 Aligned_cols=134 Identities=14% Similarity=0.127 Sum_probs=64.7
Q ss_pred HHHHHHhhCCCCCCHhhHHHHHHHHHhcCChhhhhcchHHHHHHHHHHHhCCCCCCccccCCHhhHHHHHHHHhcCCCHH
Q 038190 217 VLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVD 296 (531)
Q Consensus 217 ~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 296 (531)
++++.+.+.++.|+...+..++..+.+.|.+. .+..+...+ +-+|.......+-.+.. ...
T Consensus 15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~-----------~L~qllq~~------Vi~DSk~lA~~LLs~~~--~~~ 75 (167)
T PF07035_consen 15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFS-----------QLHQLLQYH------VIPDSKPLACQLLSLGN--QYP 75 (167)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHH-----------HHHHHHhhc------ccCCcHHHHHHHHHhHc--cCh
Confidence 34455555666777777777777777666544 333344433 33443333333322222 122
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 038190 297 KAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMI 376 (531)
Q Consensus 297 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 376 (531)
.+.++--+|.+. =...+..++..+...|++-+|.++.+..... +......++++-.+.++...-..+|+-..
T Consensus 76 ~~~Ql~lDMLkR----L~~~~~~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~lf~~V~~ff~ 147 (167)
T PF07035_consen 76 PAYQLGLDMLKR----LGTAYEEIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQLFYAVFRFFE 147 (167)
T ss_pred HHHHHHHHHHHH----hhhhHHHHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 222222223222 0012445556666677777777766554322 22223445566556666555445554444
Q ss_pred h
Q 038190 377 S 377 (531)
Q Consensus 377 ~ 377 (531)
+
T Consensus 148 ~ 148 (167)
T PF07035_consen 148 E 148 (167)
T ss_pred H
Confidence 3
No 269
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=93.26 E-value=0.93 Score=40.19 Aligned_cols=84 Identities=13% Similarity=0.048 Sum_probs=52.4
Q ss_pred hhHHHHHHHHHccCCcchHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHH-cCCCCCCCCcHHhHHH
Q 038190 123 VSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVA-FDCRPNVIPNVICYAS 201 (531)
Q Consensus 123 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~~~~~~~~~ 201 (531)
.++..++..+...|+++.+...++.+....+. +...|..++.+|.+.|+...|+..|+++.. .....++.|...+...
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~-~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~ 232 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELDPY-DEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRAL 232 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence 35566666666677777777777777666433 556677777777777777777777766655 2234444456666655
Q ss_pred HHHHHH
Q 038190 202 IIDGLC 207 (531)
Q Consensus 202 l~~~~~ 207 (531)
......
T Consensus 233 y~~~~~ 238 (280)
T COG3629 233 YEEILR 238 (280)
T ss_pred HHHHhc
Confidence 555533
No 270
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=93.17 E-value=8.4 Score=37.00 Aligned_cols=55 Identities=16% Similarity=0.183 Sum_probs=26.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 038190 321 IDGYCLMGRIDDARKLFVSIESEGCI-PDTSSYNTLINSYSKIEKVEEALSLYGEM 375 (531)
Q Consensus 321 l~~~~~~g~~~~a~~~~~~~~~~g~~-p~~~~~~~li~~~~~~~~~~~a~~~~~~~ 375 (531)
..++-+.|+.++|.+.|++|.+.... -.......|++++...+.+.++..++.+.
T Consensus 266 AmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kY 321 (539)
T PF04184_consen 266 AMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKY 321 (539)
T ss_pred HHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHh
Confidence 33344455555555555555443211 12223444555555555555555555544
No 271
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=93.06 E-value=0.11 Score=29.10 Aligned_cols=32 Identities=19% Similarity=0.345 Sum_probs=21.3
Q ss_pred HHHHHHcCCCCChhhHHHHHHHHHccCCHHHHH
Q 038190 75 FNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFI 107 (531)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 107 (531)
|++.++..|. +..+|+.+...|...|++++|+
T Consensus 2 y~kAie~~P~-n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPN-NAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCC-CHHHHHHHHHHHHHCcCHHhhc
Confidence 4455555555 6677777777777777777764
No 272
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=93.05 E-value=15 Score=39.42 Aligned_cols=23 Identities=17% Similarity=0.014 Sum_probs=15.5
Q ss_pred HHHHHHHHhccCChhHHHhhHHH
Q 038190 496 VSILEELLNKDENCHECMNLLPS 518 (531)
Q Consensus 496 ~~~l~~~~~~~g~~~~a~~~~~~ 518 (531)
...|+.++.+.|..+.|.++=+.
T Consensus 1187 ~~~Ll~~l~~~g~~eqa~~Lq~~ 1209 (1265)
T KOG1920|consen 1187 LKRLLEVLVTFGMDEQARALQKA 1209 (1265)
T ss_pred HHHHHHHHHHcCCcHHHHHHHHH
Confidence 44677777777877777665444
No 273
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=93.03 E-value=1.2 Score=36.80 Aligned_cols=64 Identities=16% Similarity=0.149 Sum_probs=38.2
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCCCcHHhHHHHHHHHHhcCChhHHHHHHHHHhh
Q 038190 159 TLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKG 224 (531)
Q Consensus 159 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 224 (531)
.+..+...|++.|+.+.|++.|.++......++ .-...+-.+|+.....+++..+...+.+...
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~--~~id~~l~~irv~i~~~d~~~v~~~i~ka~~ 101 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPG--HKIDMCLNVIRVAIFFGDWSHVEKYIEKAES 101 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHH--HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 555666667777777777777766665433322 2233555666666666777766666655543
No 274
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=93.02 E-value=8.9 Score=36.87 Aligned_cols=97 Identities=18% Similarity=0.171 Sum_probs=62.1
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHH
Q 038190 311 IPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEA 390 (531)
Q Consensus 311 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~a 390 (531)
..|.....+++..+.......-.+.+..+|...| -+...|..++.+|... ..++-..+|+++.+..+.
T Consensus 63 ~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn--------- 130 (711)
T COG1747 63 LLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN--------- 130 (711)
T ss_pred cccchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch---------
Confidence 3456666777777777777777777777777765 2566777777877777 556677777777765432
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHhhh
Q 038190 391 AELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPR 434 (531)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 434 (531)
|+..-..|+.-|-+ ++.+.+..+|.++..
T Consensus 131 --------------Dvv~~ReLa~~yEk-ik~sk~a~~f~Ka~y 159 (711)
T COG1747 131 --------------DVVIGRELADKYEK-IKKSKAAEFFGKALY 159 (711)
T ss_pred --------------hHHHHHHHHHHHHH-hchhhHHHHHHHHHH
Confidence 33344444444444 555566666655554
No 275
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=92.79 E-value=4.5 Score=32.86 Aligned_cols=136 Identities=12% Similarity=0.106 Sum_probs=81.0
Q ss_pred HHHHHHHHHcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCcchHHHHHHHHHHC
Q 038190 72 LCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRK 151 (531)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 151 (531)
.+.+..+.+.++.|+...|..++..+.+.|++.... .+++.++-+|.......+-.+.. ....+.++=-.|.++
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~----qllq~~Vi~DSk~lA~~LLs~~~--~~~~~~Ql~lDMLkR 87 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLH----QLLQYHVIPDSKPLACQLLSLGN--QYPPAYQLGLDMLKR 87 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHH----HHHhhcccCCcHHHHHHHHHhHc--cChHHHHHHHHHHHH
Confidence 334455556677788888888888888888865544 44455556666555544433332 233344444444332
Q ss_pred CCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCCCcHHhHHHHHHHHHhcCChhHHHHHHHHHhhC
Q 038190 152 VFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGR 225 (531)
Q Consensus 152 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 225 (531)
=...+..+++.+...|++-+|+++....... +...-..++.+..+.+|...-..+|+-..++
T Consensus 88 ----L~~~~~~iievLL~~g~vl~ALr~ar~~~~~--------~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~~ 149 (167)
T PF07035_consen 88 ----LGTAYEEIIEVLLSKGQVLEALRYARQYHKV--------DSVPARKFLEAAANSNDDQLFYAVFRFFEER 149 (167)
T ss_pred ----hhhhHHHHHHHHHhCCCHHHHHHHHHHcCCc--------ccCCHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 0114456777888888888888887765321 2233455677777777766666666665553
No 276
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=92.77 E-value=0.32 Score=27.66 Aligned_cols=25 Identities=16% Similarity=0.069 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHH
Q 038190 443 TYTVMICGLCIEGGIEKAYDLLPDM 467 (531)
Q Consensus 443 ~~~~l~~~~~~~g~~~~A~~~~~~~ 467 (531)
+|..|...|.+.|++++|+++|++.
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~a 25 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQA 25 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3667778888888888888877764
No 277
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=92.74 E-value=0.23 Score=28.28 Aligned_cols=27 Identities=15% Similarity=0.047 Sum_probs=23.1
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHhhh
Q 038190 408 VFNCLVDGLCKSWRLRSAWELFKKLPR 434 (531)
Q Consensus 408 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 434 (531)
+|..|...|.+.|++++|..+|++...
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~ 27 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALA 27 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 478899999999999999999999653
No 278
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=92.52 E-value=12 Score=36.91 Aligned_cols=174 Identities=14% Similarity=0.060 Sum_probs=109.1
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCH------hhHHHHHHHHHc----cCCcchHHHHHHHHHHCCCCCChhh
Q 038190 90 FNSLLGALAGKKYYVNFICLSERLNTIGLLPDF------VSLNILMNCFCK----MIGVSDAFVALGRILRKVFSPDVVT 159 (531)
Q Consensus 90 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~------~~~~~li~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~ 159 (531)
...++....-.||-+.+++++.+..+.+---.+ -+|+.++..++. ..+.+.|.++++.+.+. -|+...
T Consensus 191 ~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP~s~l 268 (468)
T PF10300_consen 191 VLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--YPNSAL 268 (468)
T ss_pred HHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--CCCcHH
Confidence 344555666778999999998887654311111 234444444443 34677899999999887 456655
Q ss_pred HHH-HHHHHHhcCChHHHHHHHHHHHHcCCCCCCCCcHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHhhHHHHH
Q 038190 160 LGC-LIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLI 238 (531)
Q Consensus 160 ~~~-li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li 238 (531)
|.. -.+.+...|++++|++.|++.......-. .-....+-.+.-.+.-..+|++|.+.|..+.+..-- +..+|.-+.
T Consensus 269 fl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~-Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~W-Ska~Y~Y~~ 346 (468)
T PF10300_consen 269 FLFFEGRLERLKGNLEEAIESFERAIESQSEWK-QLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKW-SKAFYAYLA 346 (468)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHhccchhhHH-hHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcccc-HHHHHHHHH
Confidence 553 34677788999999999997653110100 013345556667788899999999999999875322 233333333
Q ss_pred H-HHHhcCChhhhhcchHHHHHHHHHHHhC
Q 038190 239 R-VYCCAVNWEDAKGNTSAALELHEEFVNG 267 (531)
Q Consensus 239 ~-~~~~~~~~~~a~~~~~~a~~~~~~~~~~ 267 (531)
. ++...++.+.+....++|.++|.++...
T Consensus 347 a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l 376 (468)
T PF10300_consen 347 AACLLMLGREEEAKEHKKEAEELFRKVPKL 376 (468)
T ss_pred HHHHHhhccchhhhhhHHHHHHHHHHHHHH
Confidence 2 3445566645555556666677776543
No 279
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=92.47 E-value=3.9 Score=31.36 Aligned_cols=61 Identities=16% Similarity=0.118 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHcCCChHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 038190 407 TVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDME 468 (531)
Q Consensus 407 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 468 (531)
..+...++.+...|+-+.-.+++..+.+. -.+++...-.+..+|.+.|+..++-+++.+.-
T Consensus 87 e~vD~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~AC 147 (161)
T PF09205_consen 87 EYVDLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEAC 147 (161)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHH
Confidence 44555566666677777766776666542 25566666677777777777776665555443
No 280
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=92.45 E-value=6.9 Score=34.14 Aligned_cols=215 Identities=12% Similarity=0.022 Sum_probs=126.2
Q ss_pred CCCCCChhhHHHHHHH-HHhcCChHHHHHHHHHHHHcCCCCCCCCcHHhHHHHHHHHHhcCChhHHHHHHHHHhhC---C
Q 038190 151 KVFSPDVVTLGCLIRG-LCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGR---G 226 (531)
Q Consensus 151 ~~~~~~~~~~~~li~~-~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~---g 226 (531)
.+-+||+..-|..-.. -.+..++++|+.-|+++.+.....+ ...-.+..-++..+.+.+++++....|.+|... .
T Consensus 20 s~sEpdVDlENQYYnsK~l~e~~p~~Al~sF~kVlelEgEKg-eWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSA 98 (440)
T KOG1464|consen 20 SNSEPDVDLENQYYNSKGLKEDEPKEALSSFQKVLELEGEKG-EWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSA 98 (440)
T ss_pred cCCCCCcchHhhhhccccccccCHHHHHHHHHHHHhcccccc-hhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHH
Confidence 3345665544433221 1223467888888888776532221 012234455677788888888888877776531 1
Q ss_pred --CCCCHhhHHHHHHHHHhcCChhhhhcchHHHHHHHHHHHhCCCCCCccccCCHhhHHHHHHHHhcCCCHHHHHHHHHH
Q 038190 227 --IYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLD 304 (531)
Q Consensus 227 --~~p~~~~~~~li~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 304 (531)
-.-+..+.|++++-.+...+.+--...|+..++.++...... .-..|-+-+...|...+.+....+++++
T Consensus 99 VTrNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeR--------LWFKTNtKLgkl~fd~~e~~kl~KIlkq 170 (440)
T KOG1464|consen 99 VTRNYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNER--------LWFKTNTKLGKLYFDRGEYTKLQKILKQ 170 (440)
T ss_pred HhccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcce--------eeeeccchHhhhheeHHHHHHHHHHHHH
Confidence 112445567777666655555555555666555655554433 2333455677888888888888888888
Q ss_pred HHhCCCCC-----------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC-CCCCHHHHHHHHHHH-----HhcCCHHH
Q 038190 305 MKSRGIIP-----------DVVVYSSLIDGYCLMGRIDDARKLFVSIESEG-CIPDTSSYNTLINSY-----SKIEKVEE 367 (531)
Q Consensus 305 ~~~~~~~~-----------~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g-~~p~~~~~~~li~~~-----~~~~~~~~ 367 (531)
+....-.. =...|..-|++|....+-.+...++++.+... --|.+... .+|+-| .+.|++++
T Consensus 171 Lh~SCq~edGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlIm-GvIRECGGKMHlreg~fe~ 249 (440)
T KOG1464|consen 171 LHQSCQTEDGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIM-GVIRECGGKMHLREGEFEK 249 (440)
T ss_pred HHHHhccccCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHHH-hHHHHcCCccccccchHHH
Confidence 76542111 13467777888888888888888888765432 22444333 334433 46678887
Q ss_pred HHHHHHHH
Q 038190 368 ALSLYGEM 375 (531)
Q Consensus 368 a~~~~~~~ 375 (531)
|-.-|-+.
T Consensus 250 AhTDFFEA 257 (440)
T KOG1464|consen 250 AHTDFFEA 257 (440)
T ss_pred HHhHHHHH
Confidence 76444333
No 281
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.35 E-value=5.1 Score=32.42 Aligned_cols=134 Identities=13% Similarity=0.074 Sum_probs=63.8
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCCCcHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHh-hHHH
Q 038190 158 VTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAF-VYNS 236 (531)
Q Consensus 158 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~-~~~~ 236 (531)
..|..-+. +++.+..++|+.-|..+...|...- .+-..--+.......|+...|...|+++-...-.|... -...
T Consensus 60 d~flaAL~-lA~~~k~d~Alaaf~~lektg~g~Y---pvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~AR 135 (221)
T COG4649 60 DAFLAALK-LAQENKTDDALAAFTDLEKTGYGSY---PVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLAR 135 (221)
T ss_pred HHHHHHHH-HHHcCCchHHHHHHHHHHhcCCCcc---hHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHH
Confidence 34444433 4556677777777777776543320 11112222334556677777777777776543333322 1111
Q ss_pred HHH--HHHhcCChhhhhcchHHHHHHHHHHHhCCCCCCccccCCHhhHHHHHHHHhcCCCHHHHHHHHHHHHhC
Q 038190 237 LIR--VYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSR 308 (531)
Q Consensus 237 li~--~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 308 (531)
+=. .+...|.+++... ..+.+...+ .+-....-..|.-+-.+.|++..|...|.++...
T Consensus 136 lraa~lLvD~gsy~dV~s-------rvepLa~d~------n~mR~sArEALglAa~kagd~a~A~~~F~qia~D 196 (221)
T COG4649 136 LRAAYLLVDNGSYDDVSS-------RVEPLAGDG------NPMRHSAREALGLAAYKAGDFAKAKSWFVQIAND 196 (221)
T ss_pred HHHHHHHhccccHHHHHH-------HhhhccCCC------ChhHHHHHHHHhHHHHhccchHHHHHHHHHHHcc
Confidence 111 2233444443333 333333222 1222233344444555666666666666665543
No 282
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=92.08 E-value=5 Score=32.17 Aligned_cols=104 Identities=16% Similarity=0.226 Sum_probs=53.1
Q ss_pred CCHHHHHHHHHHHHHcCCCC-ChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCcchHHHH
Q 038190 66 VELNDALCFFNYMIHMQPTP-FMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVA 144 (531)
Q Consensus 66 g~~~~A~~~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~ 144 (531)
++.+++..++.-+.-..|.. ...++.. ..+.+.|+|.+|+.+|+.+.+.+ |.......|+..|....+ +..++.
T Consensus 24 ~~~~D~e~lL~ALrvLRP~~~e~~~~~~--~l~i~r~~w~dA~rlLr~l~~~~--~~~p~~kALlA~CL~~~~-D~~Wr~ 98 (160)
T PF09613_consen 24 GDPDDAEALLDALRVLRPEFPELDLFDG--WLHIVRGDWDDALRLLRELEERA--PGFPYAKALLALCLYALG-DPSWRR 98 (160)
T ss_pred CChHHHHHHHHHHHHhCCCchHHHHHHH--HHHHHhCCHHHHHHHHHHHhccC--CCChHHHHHHHHHHHHcC-ChHHHH
Confidence 37888888888887754441 2223332 33567788888888888876553 333333344443333222 222332
Q ss_pred -HHHHHHCCCCCChhhHHHHHHHHHhcCChHHHH
Q 038190 145 -LGRILRKVFSPDVVTLGCLIRGLCMQGKFTEAS 177 (531)
Q Consensus 145 -~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 177 (531)
-+++...+..|+. ..+++.+....+...|.
T Consensus 99 ~A~evle~~~d~~a---~~Lv~~Ll~~~~~~~a~ 129 (160)
T PF09613_consen 99 YADEVLESGADPDA---RALVRALLARADLEPAH 129 (160)
T ss_pred HHHHHHhcCCChHH---HHHHHHHHHhccccchh
Confidence 3445555433333 23444444444444433
No 283
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.08 E-value=7.2 Score=33.57 Aligned_cols=211 Identities=13% Similarity=0.014 Sum_probs=105.9
Q ss_pred HhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChhhhhcchHHHHHHHHHHHhCCCCCCcccc
Q 038190 197 ICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICH 276 (531)
Q Consensus 197 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~ 276 (531)
..|.-...+|....++++|...+.+..+ +|-.+..+=.|-+.+++|.-+.+++....
T Consensus 32 s~yekAAvafRnAk~feKakdcLlkA~~---------------~yEnnrslfhAAKayEqaamLake~~kls-------- 88 (308)
T KOG1585|consen 32 SLYEKAAVAFRNAKKFEKAKDCLLKASK---------------GYENNRSLFHAAKAYEQAAMLAKELSKLS-------- 88 (308)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHH---------------HHHhcccHHHHHHHHHHHHHHHHHHHHhH--------
Confidence 3444455566666777777766655542 22222222233344444444555554432
Q ss_pred CCHhhHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc---CCC--CCHHH
Q 038190 277 PDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESE---GCI--PDTSS 351 (531)
Q Consensus 277 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~---g~~--p~~~~ 351 (531)
--+..|+-....|...|..+-|-..+++.-+. ...-++++|.++|++.... +-. --...
T Consensus 89 Evvdl~eKAs~lY~E~GspdtAAmaleKAak~----------------lenv~Pd~AlqlYqralavve~~dr~~ma~el 152 (308)
T KOG1585|consen 89 EVVDLYEKASELYVECGSPDTAAMALEKAAKA----------------LENVKPDDALQLYQRALAVVEEDDRDQMAFEL 152 (308)
T ss_pred HHHHHHHHHHHHHHHhCCcchHHHHHHHHHHH----------------hhcCCHHHHHHHHHHHHHHHhccchHHHHHHH
Confidence 11334555556666666666655555543321 1233444455544443211 100 01122
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHH
Q 038190 352 YNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKK 431 (531)
Q Consensus 352 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 431 (531)
+...-+.+.+..++++|-..+.+-... ....... ..-...|.+.|-.|....++..|.+.++.
T Consensus 153 ~gk~sr~lVrl~kf~Eaa~a~lKe~~~---------------~~~~~~y--~~~~k~~va~ilv~L~~~Dyv~aekc~r~ 215 (308)
T KOG1585|consen 153 YGKCSRVLVRLEKFTEAATAFLKEGVA---------------ADKCDAY--NSQCKAYVAAILVYLYAHDYVQAEKCYRD 215 (308)
T ss_pred HHHhhhHhhhhHHhhHHHHHHHHhhhH---------------HHHHhhc--ccHHHHHHHHHHHHhhHHHHHHHHHHhcc
Confidence 333444555666666655444332110 0000000 00124566777778888899999999988
Q ss_pred hhhCC---CCCcHHHHHHHHHHHHHcCCHHHHHHHH
Q 038190 432 LPRYG---PEPNVVTYTVMICGLCIEGGIEKAYDLL 464 (531)
Q Consensus 432 ~~~~g---~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 464 (531)
-.+.+ -.-+..+...|+.+| ..|+.+++.+++
T Consensus 216 ~~qip~f~~sed~r~lenLL~ay-d~gD~E~~~kvl 250 (308)
T KOG1585|consen 216 CSQIPAFLKSEDSRSLENLLTAY-DEGDIEEIKKVL 250 (308)
T ss_pred hhcCccccChHHHHHHHHHHHHh-ccCCHHHHHHHH
Confidence 54421 123566777888777 567777766554
No 284
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=92.07 E-value=13 Score=36.54 Aligned_cols=169 Identities=12% Similarity=0.027 Sum_probs=86.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHH
Q 038190 313 DVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAE 392 (531)
Q Consensus 313 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~a~~ 392 (531)
+..+|..-+..-.+.|+.+.+.-+|++..-. +..-...|--.+.-....|+.+-|..++....+--++.
T Consensus 296 ql~nw~~yLdf~i~~g~~~~~~~l~ercli~-cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~---------- 364 (577)
T KOG1258|consen 296 QLKNWRYYLDFEITLGDFSRVFILFERCLIP-CALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKK---------- 364 (577)
T ss_pred HHHHHHHHhhhhhhcccHHHHHHHHHHHHhH-HhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCC----------
Confidence 3456666677777778888887777776531 01112233333333344466666665555443321111
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHhhhCCCCCcHH-HHHHHHHHHHHcCCHHHHHH---HHHHHH
Q 038190 393 LFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVV-TYTVMICGLCIEGGIEKAYD---LLPDME 468 (531)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~g~~~~A~~---~~~~~~ 468 (531)
.|....+.+. ..-..|+++.|..+++.+.+. . |+.. .-..-+....+.|+.+.+.. ++....
T Consensus 365 ----------~~~i~L~~a~--f~e~~~n~~~A~~~lq~i~~e-~-pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~ 430 (577)
T KOG1258|consen 365 ----------TPIIHLLEAR--FEESNGNFDDAKVILQRIESE-Y-PGLVEVVLRKINWERRKGNLEDANYKNELYSSIY 430 (577)
T ss_pred ----------CcHHHHHHHH--HHHhhccHHHHHHHHHHHHhh-C-CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhc
Confidence 1222222222 233456777777777777654 2 3322 11222334445566665552 222111
Q ss_pred HH--------------------H-hhHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccC
Q 038190 469 EK--------------------I-RECLKAIELLHKMAKRYVKPDEITVSILEELLNKDE 507 (531)
Q Consensus 469 ~~--------------------i-~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 507 (531)
.. | ++.+.|..++.++.+.- +++...|..+++.....+
T Consensus 431 ~~~~~~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~~-~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 431 EGKENNGILEKLYVKFARLRYKIREDADLARIILLEANDIL-PDCKVLYLELIRFELIQP 489 (577)
T ss_pred ccccCcchhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhcC-CccHHHHHHHHHHHHhCC
Confidence 11 1 56677777777777543 456666777766665554
No 285
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=92.02 E-value=16 Score=37.46 Aligned_cols=295 Identities=13% Similarity=0.082 Sum_probs=160.5
Q ss_pred hhhhcccCCCCCcCCHHHHHHHHHHHHHcCCCCChh-----hHHHHHHHHHccCCHHHHHHHHHHHHhCCCC----CCHh
Q 038190 53 LLKYLSENSKSGEVELNDALCFFNYMIHMQPTPFMP-----SFNSLLGALAGKKYYVNFICLSERLNTIGLL----PDFV 123 (531)
Q Consensus 53 l~~~l~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-----~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~----~~~~ 123 (531)
+-.+|-.... +++.|...+++......+++.. +...++..+.+.+... |....++.++.--. +-..
T Consensus 65 la~iL~~eT~----n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~ 139 (608)
T PF10345_consen 65 LASILLEETE----NLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYY 139 (608)
T ss_pred HHHHHHHHcC----CHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHHH
Confidence 4455554432 8999999999876644333322 2234455566665555 88888887654211 2223
Q ss_pred hHHHH-HHHHHccCCcchHHHHHHHHHHCC---CCCChhhHHHHHHHHHh--cCChHHHHHHHHHHHHcCC------CCC
Q 038190 124 SLNIL-MNCFCKMIGVSDAFVALGRILRKV---FSPDVVTLGCLIRGLCM--QGKFTEASGLFTKFVAFDC------RPN 191 (531)
Q Consensus 124 ~~~~l-i~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~~~~~li~~~~~--~g~~~~a~~~~~~~~~~~~------~~~ 191 (531)
.|..+ +..+...+++..|.+.++.+...- ..+...++-.++.+... .+..+++++.++++..... .+
T Consensus 140 ~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~- 218 (608)
T PF10345_consen 140 AFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSV- 218 (608)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCC-
Confidence 33333 223333479999999998876642 23445555555555443 4556777777776633221 12
Q ss_pred CCCcHHhHHHHHHHHH--hcCChhHHHHHHHHHhh-------CC----------CC-------------CCHhhH-----
Q 038190 192 VIPNVICYASIIDGLC--KDGFVNKVRVLFLDMKG-------RG----------IY-------------PDAFVY----- 234 (531)
Q Consensus 192 ~~~~~~~~~~l~~~~~--~~~~~~~a~~~~~~m~~-------~g----------~~-------------p~~~~~----- 234 (531)
..|...+|..+++.++ ..|+++.+...++++.+ .. ++ +....|
T Consensus 219 ~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~~~~~~~~~~~w~~~~~d~~i~l~~~~~~~~~~~~~~~f~wl~~~~ 298 (608)
T PF10345_consen 219 HIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQFLDEIKKSPSWPSWDEDGSIPLNIGEGSSNSGGTPLVFSWLPKEE 298 (608)
T ss_pred CcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCccCCCcCCCeeEEeecccccccCCCceeEEeecCHHH
Confidence 2356677888877665 45776677666555432 11 00 111111
Q ss_pred ----HHHHH--HHHhcCChhhhhcchHHHHHHHHHHH-hCCCCCCccc--cCCHhhHHHHHH---------HHhcCCCHH
Q 038190 235 ----NSLIR--VYCCAVNWEDAKGNTSAALELHEEFV-NGNGELGVIC--HPDVLSYCSIIN---------SLCKDVLVD 296 (531)
Q Consensus 235 ----~~li~--~~~~~~~~~~a~~~~~~a~~~~~~~~-~~~~~~~~~~--~~~~~~~~~ll~---------~~~~~~~~~ 296 (531)
.-++. ..+..+..+.+.+.++++++..+... ......+..+ ..+...|...+. ..+-.+++.
T Consensus 299 l~~L~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~sl~~~~~~~~~~~~l~~~~~~y~~~~~~~~~~~~ 378 (608)
T PF10345_consen 299 LYALVYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLKIKSPSAPSESLSEASERIQWLRYLQCYLLFYQIWCNFIRGDWS 378 (608)
T ss_pred HHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccCCCCCCcCHHHHHHhHHHHHHHHHHHHHHHHHHHHHCcCHH
Confidence 11122 23344555689999999999999988 2221100000 001111222222 223478899
Q ss_pred HHHHHHHHHHhCCC-CC-----CHHHHHHHHH--HHHhcCCHHHHHHHHH--------HHHhcCCCCCHHHHH
Q 038190 297 KAKELFLDMKSRGI-IP-----DVVVYSSLID--GYCLMGRIDDARKLFV--------SIESEGCIPDTSSYN 353 (531)
Q Consensus 297 ~a~~~~~~~~~~~~-~~-----~~~~~~~ll~--~~~~~g~~~~a~~~~~--------~~~~~g~~p~~~~~~ 353 (531)
.|...++.+.+... .| ....+...+. .+...|+.+.|...|. .....+...+..++.
T Consensus 379 ~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~~~~~~~~~~El~ila 451 (608)
T PF10345_consen 379 KATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCEAANRKSKFRELYILA 451 (608)
T ss_pred HHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhhhhccCCcchHHHHHH
Confidence 99999998876421 11 1222233332 2445799999999997 444555544444443
No 286
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=91.46 E-value=2.8 Score=34.71 Aligned_cols=97 Identities=10% Similarity=-0.076 Sum_probs=58.1
Q ss_pred hhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCH--hhHHHHHHHHHccCCcchHHHHHHHHHHCCCC---CChhhHHH
Q 038190 88 PSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDF--VSLNILMNCFCKMIGVSDAFVALGRILRKVFS---PDVVTLGC 162 (531)
Q Consensus 88 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~--~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~---~~~~~~~~ 162 (531)
..+..+...|.+.|+.+.|++.|.++.+....+.. ..+-.+|+...-.+++..+...+.++...--. ++....-.
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 35677777888888888888888888776544433 35667777777778888877777666543111 11111111
Q ss_pred HHH--HHHhcCChHHHHHHHHHHH
Q 038190 163 LIR--GLCMQGKFTEASGLFTKFV 184 (531)
Q Consensus 163 li~--~~~~~g~~~~a~~~~~~~~ 184 (531)
... .+...+++..|-+.|-...
T Consensus 117 ~~~gL~~l~~r~f~~AA~~fl~~~ 140 (177)
T PF10602_consen 117 VYEGLANLAQRDFKEAAELFLDSL 140 (177)
T ss_pred HHHHHHHHHhchHHHHHHHHHccC
Confidence 111 1233567777766665553
No 287
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=91.05 E-value=20 Score=36.76 Aligned_cols=383 Identities=11% Similarity=-0.028 Sum_probs=188.4
Q ss_pred ChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHH---ccCCcchHHHHHHHHHHCCCCCChhhHHH
Q 038190 86 FMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFC---KMIGVSDAFVALGRILRKVFSPDVVTLGC 162 (531)
Q Consensus 86 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~---~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 162 (531)
+...++.||..+-+.|++++...--..|.+.- +.++..|..-+.... ..++...+..+|++.+..- -++..|.-
T Consensus 112 ~~~~~v~Li~llrk~~dl~kl~~ar~~~~~~~-pl~~~lWl~Wl~d~~~mt~s~~~~~v~~~~ekal~dy--~~v~iw~e 188 (881)
T KOG0128|consen 112 KYAQMVQLIGLLRKLGDLEKLRQARLEMSEIA-PLPPHLWLEWLKDELSMTQSEERKEVEELFEKALGDY--NSVPIWEE 188 (881)
T ss_pred chHHHHHHHHHHHHhcchHHHHHHHHHHHHhc-CCChHHHHHHHHHHHhhccCcchhHHHHHHHHHhccc--ccchHHHH
Confidence 66778889999999999988877777776653 556666665555433 4467777788888776553 24444444
Q ss_pred HHHHHH-------hcCChHHHHHHHHHHHHc-CCCCCCCCcHHhHHHH---HHHHHhcCChhHHHHHHHHHhhCCCCCCH
Q 038190 163 LIRGLC-------MQGKFTEASGLFTKFVAF-DCRPNVIPNVICYASI---IDGLCKDGFVNKVRVLFLDMKGRGIYPDA 231 (531)
Q Consensus 163 li~~~~-------~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~~~~~l---~~~~~~~~~~~~a~~~~~~m~~~g~~p~~ 231 (531)
.+..+. ..++++....+|++.... |..- ......|... -..|..+-..++...+|..-...+ .|.
T Consensus 189 ~~~y~~~~~~~~~~~~d~k~~R~vf~ral~s~g~~~--t~G~~~we~~~E~e~~~l~n~~~~qv~a~~~~el~~~--~D~ 264 (881)
T KOG0128|consen 189 VVNYLVGFGNVAKKSEDYKKERSVFERALRSLGSHI--TEGAAIWEMYREFEVTYLCNVEQRQVIALFVRELKQP--LDE 264 (881)
T ss_pred HHHHHHhccccccccccchhhhHHHHHHHhhhhhhh--cccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhcc--chh
Confidence 443332 346778888888887753 1111 0122333333 334455555567777777666554 344
Q ss_pred hhHHHHHHHHHhcCChhhhhcchHHHHH-------HHHHHHhCCCCCCccccCCHhhHHHHHHHHhcCCCHHHHHHHHHH
Q 038190 232 FVYNSLIRVYCCAVNWEDAKGNTSAALE-------LHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLD 304 (531)
Q Consensus 232 ~~~~~li~~~~~~~~~~~a~~~~~~a~~-------~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 304 (531)
.+-+.-+....+...++.....++.+.. .|+...... .+-...|-.++.-+...|+.-....++++
T Consensus 265 ~~~~~~~~~~sk~h~~~~~~~~~~~a~~~l~~~~~~~e~~~q~~-------~~~~q~~~~yidfe~~~G~p~ri~l~~eR 337 (881)
T KOG0128|consen 265 DTRGWDLSEQSKAHVYDVETKKLDDALKNLAKILFKFERLVQKE-------PIKDQEWMSYIDFEKKSGDPVRIQLIEER 337 (881)
T ss_pred hhhHHHHHHHHhcchHHHHhccHHHHHHHHHHHHHHHHHHhhhh-------HHHHHHHHHHHHHHHhcCCchHHHHHHHH
Confidence 4433333333333333333333333333 333333322 23345577777888888887666666665
Q ss_pred HHhCCCCCCHHHH---HHHH-----------HHHH-hcCCHHHHHHHHHH---HHhcCCCCCHHHHHHHHHHHHhcCCHH
Q 038190 305 MKSRGIIPDVVVY---SSLI-----------DGYC-LMGRIDDARKLFVS---IESEGCIPDTSSYNTLINSYSKIEKVE 366 (531)
Q Consensus 305 ~~~~~~~~~~~~~---~~ll-----------~~~~-~~g~~~~a~~~~~~---~~~~g~~p~~~~~~~li~~~~~~~~~~ 366 (531)
+..... .+...| ...+ .+|. ..+...-...++++ ....+-.+....+..+-..+... +.
T Consensus 338 ~~~E~~-~~~~~wi~y~~~~d~eLkv~~~~~~~~~ra~R~cp~tgdL~~rallAleR~re~~~vI~~~l~~~ls~~--~~ 414 (881)
T KOG0128|consen 338 AVAEMV-LDRALWIGYGVYLDTELKVPQRGVSVHPRAVRSCPWTGDLWKRALLALERNREEITVIVQNLEKDLSMT--VE 414 (881)
T ss_pred HHHhcc-ccHHHHhhhhhhcccccccccccccccchhhcCCchHHHHHHHHHHHHHhcCcchhhHHHHHHHHHHHH--HH
Confidence 543311 111111 1111 1111 00111111111111 11222223333332222222110 01
Q ss_pred HHHHHHHHHHhCCCCCC-------cccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH-HcCCChHHHHHHHHHhhhCCCC
Q 038190 367 EALSLYGEMISMGVRPD-------NSCILEAAELFRTLHNTKFELDLTVFNCLVDGL-CKSWRLRSAWELFKKLPRYGPE 438 (531)
Q Consensus 367 ~a~~~~~~~~~~~~~~~-------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~~~~A~~~~~~~~~~g~~ 438 (531)
.+..++......+-..+ ...+..|...|.........+...+.......+ .-.++.+.|+.+|+.....|..
T Consensus 415 l~~~~~~~rr~~~~~~~s~~~s~lr~~F~~A~~eLt~~~~~~~Dt~~~~~q~wA~~E~sl~~nmd~~R~iWn~imty~~~ 494 (881)
T KOG0128|consen 415 LHNDYLAYRRRCTNIIDSQDYSSLRAAFNHAWEELTELYGDQLDTRTEVLQLWAQVEASLLKNMDKAREIWNFIMTYGGG 494 (881)
T ss_pred HHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHhhchhhhhHhhhccccCCcc
Confidence 11111111111121111 223344444444433322222222222233333 2468899999999998876543
Q ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 038190 439 PNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECLKAIELLHKMA 485 (531)
Q Consensus 439 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~i~~~~~a~~~~~~~~ 485 (531)
-=...|-..++.-...|+...+..+++......-..+.+..+++.+.
T Consensus 495 ~iag~Wle~~~lE~~~g~~~~~R~~~R~ay~~~~~~~~~~ev~~~~~ 541 (881)
T KOG0128|consen 495 SIAGKWLEAINLEREYGDGPSARKVLRKAYSQVVDPEDALEVLEFFR 541 (881)
T ss_pred hHHHHHHHHHhHHHHhCCchhHHHHHHHHHhcCcCchhHHHHHHHHH
Confidence 22225666666666778888888877776666444444444444443
No 288
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=90.78 E-value=0.52 Score=26.19 Aligned_cols=28 Identities=11% Similarity=0.141 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHcCCChHHHHHHHHHhhh
Q 038190 407 TVFNCLVDGLCKSWRLRSAWELFKKLPR 434 (531)
Q Consensus 407 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 434 (531)
.+|..+..+|...|++++|+..|++.++
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 3566777777777777777777777766
No 289
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=90.71 E-value=27 Score=37.58 Aligned_cols=104 Identities=19% Similarity=0.176 Sum_probs=54.0
Q ss_pred HHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHH--HHHHHHHHHHhcCCH
Q 038190 288 SLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTS--SYNTLINSYSKIEKV 365 (531)
Q Consensus 288 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~--~~~~li~~~~~~~~~ 365 (531)
.+...+.+++|.-.|+..-+. ..-+.+|..+|++.+|..+..++... -+.. +-..|+.-+...+++
T Consensus 948 hL~~~~~~~~Aal~Ye~~Gkl---------ekAl~a~~~~~dWr~~l~~a~ql~~~---~de~~~~a~~L~s~L~e~~kh 1015 (1265)
T KOG1920|consen 948 HLREELMSDEAALMYERCGKL---------EKALKAYKECGDWREALSLAAQLSEG---KDELVILAEELVSRLVEQRKH 1015 (1265)
T ss_pred HHHHhccccHHHHHHHHhccH---------HHHHHHHHHhccHHHHHHHHHhhcCC---HHHHHHHHHHHHHHHHHcccc
Confidence 333455555555555433211 22345566666666666666555432 1111 124455566666666
Q ss_pred HHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHhh
Q 038190 366 EEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLP 433 (531)
Q Consensus 366 ~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 433 (531)
-+|-++..+... -..-.+..|+++..+++|..+.....
T Consensus 1016 ~eAa~il~e~~s------------------------------d~~~av~ll~ka~~~~eAlrva~~~~ 1053 (1265)
T KOG1920|consen 1016 YEAAKILLEYLS------------------------------DPEEAVALLCKAKEWEEALRVASKAK 1053 (1265)
T ss_pred hhHHHHHHHHhc------------------------------CHHHHHHHHhhHhHHHHHHHHHHhcc
Confidence 666666655443 12233445666677777777765554
No 290
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=90.55 E-value=0.32 Score=27.23 Aligned_cols=21 Identities=14% Similarity=0.213 Sum_probs=9.1
Q ss_pred cHHhHHHHHHHHHhcCChhHH
Q 038190 195 NVICYASIIDGLCKDGFVNKV 215 (531)
Q Consensus 195 ~~~~~~~l~~~~~~~~~~~~a 215 (531)
+..+|+.+...|...|++++|
T Consensus 12 n~~a~~nla~~~~~~g~~~~A 32 (34)
T PF13431_consen 12 NAEAYNNLANLYLNQGDYEEA 32 (34)
T ss_pred CHHHHHHHHHHHHHCcCHHhh
Confidence 444444444444444444443
No 291
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=90.15 E-value=11 Score=31.98 Aligned_cols=205 Identities=14% Similarity=0.050 Sum_probs=104.2
Q ss_pred CHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCcchHHHHHH
Q 038190 67 ELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALG 146 (531)
Q Consensus 67 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 146 (531)
+=+.|.-+|++- . .|.++.---....|+.+++.+. +.-+.+||.|.-.+...|+++.|.+.|+
T Consensus 61 ~eeRA~l~fERG----v-----lYDSlGL~~LAR~DftQaLai~--------P~m~~vfNyLG~Yl~~a~~fdaa~eaFd 123 (297)
T COG4785 61 DEERAQLLFERG----V-----LYDSLGLRALARNDFSQALAIR--------PDMPEVFNYLGIYLTQAGNFDAAYEAFD 123 (297)
T ss_pred hHHHHHHHHHhc----c-----hhhhhhHHHHHhhhhhhhhhcC--------CCcHHHHHHHHHHHHhcccchHHHHHhh
Confidence 456666666542 2 3444332222234555555442 2235678888888889999999999999
Q ss_pred HHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCCCcHHhHHHHHHHHHhcCChhHHHHHH-HHHhhC
Q 038190 147 RILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLF-LDMKGR 225 (531)
Q Consensus 147 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~-~~m~~~ 225 (531)
...+..+.-+-...|.-| ++--.|++.-|.+-|...-+.+ |+ .|-...|--+. -..-++.+|..-+ ++..+.
T Consensus 124 s~~ELDp~y~Ya~lNRgi-~~YY~gR~~LAq~d~~~fYQ~D--~~-DPfR~LWLYl~---E~k~dP~~A~tnL~qR~~~~ 196 (297)
T COG4785 124 SVLELDPTYNYAHLNRGI-ALYYGGRYKLAQDDLLAFYQDD--PN-DPFRSLWLYLN---EQKLDPKQAKTNLKQRAEKS 196 (297)
T ss_pred hHhccCCcchHHHhccce-eeeecCchHhhHHHHHHHHhcC--CC-ChHHHHHHHHH---HhhCCHHHHHHHHHHHHHhc
Confidence 998875443333333222 3344688888888777766642 21 02233333222 2334555665443 333333
Q ss_pred CCCCCHhhHHHHHHHHHhcCChhhhhcchHHHHHHHHHHHhCCCCCCccccCCHhhHHHHHHHHhcCCCHHHHHHHHHHH
Q 038190 226 GIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDM 305 (531)
Q Consensus 226 g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 305 (531)
|..-|...|-.+.- |+..+ .. +++.+.....+.......-..||--+..-+...|+.++|..+|+..
T Consensus 197 ----d~e~WG~~iV~~yL-gkiS~-e~-------l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLa 263 (297)
T COG4785 197 ----DKEQWGWNIVEFYL-GKISE-ET-------LMERLKADATDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLA 263 (297)
T ss_pred ----cHhhhhHHHHHHHH-hhccH-HH-------HHHHHHhhccchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHH
Confidence 55556555544432 22111 11 3333332220000000011335555666666777777777777666
Q ss_pred HhC
Q 038190 306 KSR 308 (531)
Q Consensus 306 ~~~ 308 (531)
...
T Consensus 264 ian 266 (297)
T COG4785 264 VAN 266 (297)
T ss_pred HHH
Confidence 554
No 292
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.10 E-value=5.3 Score=39.12 Aligned_cols=103 Identities=19% Similarity=0.112 Sum_probs=71.0
Q ss_pred HhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 038190 289 LCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEA 368 (531)
Q Consensus 289 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~~~~~~a 368 (531)
..+.|+++.|.++..+.. +..-|..|.++..+.|++..|.+.|.+..+ |..|+-.+...|+.+..
T Consensus 647 al~lgrl~iA~~la~e~~------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l 711 (794)
T KOG0276|consen 647 ALKLGRLDIAFDLAVEAN------SEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGL 711 (794)
T ss_pred hhhcCcHHHHHHHHHhhc------chHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHH
Confidence 456788888877765532 567788888888888888888888877654 34566666667776655
Q ss_pred HHHHHHHHhCCCCCCcccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHhhh
Q 038190 369 LSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPR 434 (531)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 434 (531)
..+-....+.| ..|...-+|...|+++++.+++..-.+
T Consensus 712 ~~la~~~~~~g----------------------------~~N~AF~~~~l~g~~~~C~~lLi~t~r 749 (794)
T KOG0276|consen 712 AVLASLAKKQG----------------------------KNNLAFLAYFLSGDYEECLELLISTQR 749 (794)
T ss_pred HHHHHHHHhhc----------------------------ccchHHHHHHHcCCHHHHHHHHHhcCc
Confidence 55555555444 223344567788999999988866543
No 293
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=89.99 E-value=0.33 Score=38.65 Aligned_cols=84 Identities=17% Similarity=0.111 Sum_probs=43.3
Q ss_pred HHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCcchHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCC
Q 038190 93 LLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGK 172 (531)
Q Consensus 93 li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 172 (531)
++..+.+.+.+.....+++.+...+...+....+.++..|++.++.+....+++.. +..-...++..|.+.|.
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~-------~~yd~~~~~~~c~~~~l 85 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTS-------NNYDLDKALRLCEKHGL 85 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSS-------SSS-CTHHHHHHHTTTS
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccc-------cccCHHHHHHHHHhcch
Confidence 34555555666666666666665554445566666666666665556555555411 11222334455555555
Q ss_pred hHHHHHHHHHH
Q 038190 173 FTEASGLFTKF 183 (531)
Q Consensus 173 ~~~a~~~~~~~ 183 (531)
+++|.-++.++
T Consensus 86 ~~~a~~Ly~~~ 96 (143)
T PF00637_consen 86 YEEAVYLYSKL 96 (143)
T ss_dssp HHHHHHHHHCC
T ss_pred HHHHHHHHHHc
Confidence 55555555443
No 294
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=89.67 E-value=22 Score=35.03 Aligned_cols=369 Identities=9% Similarity=-0.053 Sum_probs=180.9
Q ss_pred CHHHHHHHHHHHHHcCCCCChh-hHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHH-ccCCcchHHHH
Q 038190 67 ELNDALCFFNYMIHMQPTPFMP-SFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFC-KMIGVSDAFVA 144 (531)
Q Consensus 67 ~~~~A~~~~~~~~~~~~~~~~~-~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~-~~g~~~~a~~~ 144 (531)
+.+.+..+++.++..- |... -|......=.+.|..+.+.++|++.+. |++.+...|......+. ..|+.+.....
T Consensus 60 ~~~~~r~~y~~fL~ky--Pl~~gyW~kfA~~E~klg~~~~s~~Vfergv~-aip~SvdlW~~Y~~f~~n~~~d~~~lr~~ 136 (577)
T KOG1258|consen 60 DVDALREVYDIFLSKY--PLCYGYWKKFADYEYKLGNAENSVKVFERGVQ-AIPLSVDLWLSYLAFLKNNNGDPETLRDL 136 (577)
T ss_pred HHHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-hhhhHHHHHHHHHHHHhccCCCHHHHHHH
Confidence 4466677777776533 3333 455555555677778888888888765 35666666766665444 44677777777
Q ss_pred HHHHHHC-CCC-CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCCCcHHhHHHHHHHHHh-----cCChhHHHH
Q 038190 145 LGRILRK-VFS-PDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCK-----DGFVNKVRV 217 (531)
Q Consensus 145 ~~~~~~~-~~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-----~~~~~~a~~ 217 (531)
|+.++.. |.. .+...|...|.--..++++.....+++++++ .|...-+. .|.......-. ....+++.+
T Consensus 137 fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRile---iP~~~~~~-~f~~f~~~l~~~~~~~l~~~d~~~~ 212 (577)
T KOG1258|consen 137 FERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILE---IPLHQLNR-HFDRFKQLLNQNEEKILLSIDELIQ 212 (577)
T ss_pred HHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHh---hhhhHhHH-HHHHHHHHHhcCChhhhcCHHHHHH
Confidence 7777653 221 2455677777766777777777777777765 22211111 11111111110 111122111
Q ss_pred HHHHHh--------------------hCCCCCCHhhH--HHHHHHH-------HhcCChhhhhcchHHHHHHHHHHHhCC
Q 038190 218 LFLDMK--------------------GRGIYPDAFVY--NSLIRVY-------CCAVNWEDAKGNTSAALELHEEFVNGN 268 (531)
Q Consensus 218 ~~~~m~--------------------~~g~~p~~~~~--~~li~~~-------~~~~~~~~a~~~~~~a~~~~~~~~~~~ 268 (531)
+-.... ..+-+-+..+- +.+-..+ -..-...+... .|+.-....
T Consensus 213 l~~~~~~~~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~~~~~~~~~s~~~~~kr~-------~fE~~Ikrp 285 (577)
T KOG1258|consen 213 LRSDVAERSKITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIVSIHEKVYQKSEEEEEKRW-------GFEEGIKRP 285 (577)
T ss_pred HhhhHHhhhhcccccChhHHHHHHHhhccCccchhhHHHHHHHHHHHHHHHHHHhhHhHHHHHH-------hhhhhcccc
Confidence 111111 11000010000 0010000 00000011111 111111111
Q ss_pred CCC-CccccCCHhhHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-
Q 038190 269 GEL-GVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCI- 346 (531)
Q Consensus 269 ~~~-~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~- 346 (531)
... .....++..+|...+.--...|+.+.+.-+|+...-.--. =...|-..+.-....|+.+-|..++....+--.+
T Consensus 286 Yfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~-Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~ 364 (577)
T KOG1258|consen 286 YFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIPCAL-YDEFWIKYARWMESSGDVSLANNVLARACKIHVKK 364 (577)
T ss_pred ccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhh-hHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCC
Confidence 000 0002334567777777778888888888777766532111 1122333333333447777777777665544322
Q ss_pred -CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--------------cccHHHHH---HHHHHHHhCCCCCCHHH
Q 038190 347 -PDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD--------------NSCILEAA---ELFRTLHNTKFELDLTV 408 (531)
Q Consensus 347 -p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~--------------~~~~~~a~---~~~~~~~~~~~~~~~~~ 408 (531)
|....+.+.+ +-..|+++.|..+++.+.+.- |+ .+..+.+. .++....+... +..+
T Consensus 365 ~~~i~L~~a~f--~e~~~n~~~A~~~lq~i~~e~--pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~--~~~i 438 (577)
T KOG1258|consen 365 TPIIHLLEARF--EESNGNFDDAKVILQRIESEY--PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKE--NNGI 438 (577)
T ss_pred CcHHHHHHHHH--HHhhccHHHHHHHHHHHHhhC--CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhccccc--Ccch
Confidence 2222222222 234578888888888877643 44 33444444 22222222211 2222
Q ss_pred HHHHHHHH-----HcCCChHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHcCCH
Q 038190 409 FNCLVDGL-----CKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGI 457 (531)
Q Consensus 409 ~~~l~~~~-----~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~ 457 (531)
.+.+.--+ .-.++.+.|..++.++.+. .+++...|..++..+...+-.
T Consensus 439 ~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~-~~~~k~~~~~~~~~~~~~~~~ 491 (577)
T KOG1258|consen 439 LEKLYVKFARLRYKIREDADLARIILLEANDI-LPDCKVLYLELIRFELIQPSG 491 (577)
T ss_pred hHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhc-CCccHHHHHHHHHHHHhCCcc
Confidence 22222222 2367888999999998875 455677777787777666533
No 295
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.64 E-value=5.2 Score=39.17 Aligned_cols=132 Identities=17% Similarity=0.098 Sum_probs=93.8
Q ss_pred hHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 038190 281 SYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYS 360 (531)
Q Consensus 281 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~ 360 (531)
.-+.++.-+.+.|-.++|+++-. .||. - .....+.|+++.|.++..+.. +..-|..|.++..
T Consensus 616 ~rt~va~Fle~~g~~e~AL~~s~-------D~d~-r----Felal~lgrl~iA~~la~e~~------s~~Kw~~Lg~~al 677 (794)
T KOG0276|consen 616 IRTKVAHFLESQGMKEQALELST-------DPDQ-R----FELALKLGRLDIAFDLAVEAN------SEVKWRQLGDAAL 677 (794)
T ss_pred hhhhHHhHhhhccchHhhhhcCC-------Chhh-h----hhhhhhcCcHHHHHHHHHhhc------chHHHHHHHHHHh
Confidence 45566777777777777766531 2221 1 233457899999988876543 6778999999999
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHhhhCCCCCc
Q 038190 361 KIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPN 440 (531)
Q Consensus 361 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~ 440 (531)
+.+++..|.+.|.+.. -|..|+-.+...|+-+.-..+-....+.|.
T Consensus 678 ~~~~l~lA~EC~~~a~-------------------------------d~~~LlLl~t~~g~~~~l~~la~~~~~~g~--- 723 (794)
T KOG0276|consen 678 SAGELPLASECFLRAR-------------------------------DLGSLLLLYTSSGNAEGLAVLASLAKKQGK--- 723 (794)
T ss_pred hcccchhHHHHHHhhc-------------------------------chhhhhhhhhhcCChhHHHHHHHHHHhhcc---
Confidence 9999999999887754 366777788888887766666666666543
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 038190 441 VVTYTVMICGLCIEGGIEKAYDLLPDM 467 (531)
Q Consensus 441 ~~~~~~l~~~~~~~g~~~~A~~~~~~~ 467 (531)
.|.-.-+|...|+++++++++.+-
T Consensus 724 ---~N~AF~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 724 ---NNLAFLAYFLSGDYEECLELLIST 747 (794)
T ss_pred ---cchHHHHHHHcCCHHHHHHHHHhc
Confidence 233445778899999998888543
No 296
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=89.59 E-value=2.9 Score=35.21 Aligned_cols=61 Identities=13% Similarity=0.090 Sum_probs=36.9
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCcchHHHHHHHHHHC
Q 038190 90 FNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRK 151 (531)
Q Consensus 90 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 151 (531)
.+..+..+.+.+++.+++.+.+.-++.. +.|...-..++..++-.|++++|..-++-.-..
T Consensus 4 l~~t~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l 64 (273)
T COG4455 4 LRDTISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLAATL 64 (273)
T ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHHhhc
Confidence 3444556666666666666666655554 445556666666666667776666655555443
No 297
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=89.53 E-value=2.2 Score=30.92 Aligned_cols=46 Identities=13% Similarity=0.091 Sum_probs=21.0
Q ss_pred HHHHHHHhhhCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 038190 425 AWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK 470 (531)
Q Consensus 425 A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 470 (531)
..+-++.+....+.|.+....+.+.+|.+.+++.-|+++|+-+..+
T Consensus 29 ~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K 74 (108)
T PF02284_consen 29 LRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDK 74 (108)
T ss_dssp HHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 3344444444444555555555555555555555555555555444
No 298
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=89.50 E-value=2.7 Score=30.12 Aligned_cols=47 Identities=13% Similarity=0.092 Sum_probs=22.8
Q ss_pred HHHHHHHHhhhCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 038190 424 SAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK 470 (531)
Q Consensus 424 ~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 470 (531)
++.+-++.+....+.|++....+.+.+|.+.+++.-|+++|+-+..+
T Consensus 25 e~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K 71 (103)
T cd00923 25 ELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDK 71 (103)
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 33444444444444455555555555555555555555555544444
No 299
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.47 E-value=36 Score=35.93 Aligned_cols=39 Identities=8% Similarity=0.065 Sum_probs=20.9
Q ss_pred HHHhcCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHh
Q 038190 205 GLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCC 243 (531)
Q Consensus 205 ~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~ 243 (531)
.|......+.+..+++.+....-.++..-.+.++..|+.
T Consensus 600 ~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e 638 (877)
T KOG2063|consen 600 NYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLE 638 (877)
T ss_pred HHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHH
Confidence 344555566666666666544334445555555555543
No 300
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=88.38 E-value=1 Score=24.87 Aligned_cols=27 Identities=19% Similarity=0.153 Sum_probs=17.6
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHhhh
Q 038190 408 VFNCLVDGLCKSWRLRSAWELFKKLPR 434 (531)
Q Consensus 408 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 434 (531)
.|..+...|...|++++|.+.|++..+
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 455666667777777777777776665
No 301
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=88.08 E-value=23 Score=33.21 Aligned_cols=66 Identities=8% Similarity=-0.093 Sum_probs=50.4
Q ss_pred CCHhhHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 038190 277 PDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIP---DVVVYSSLIDGYCLMGRIDDARKLFVSIES 342 (531)
Q Consensus 277 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 342 (531)
....+|..++..+.+.|.++.|...+..+...+... ++.....-....-..|+..+|...++....
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 445678899999999999999999999988754211 334444445666778999999999988877
No 302
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.93 E-value=16 Score=31.30 Aligned_cols=18 Identities=6% Similarity=0.073 Sum_probs=8.8
Q ss_pred CChhHHHhhHHHhhhcch
Q 038190 507 ENCHECMNLLPSFLSRNQ 524 (531)
Q Consensus 507 g~~~~a~~~~~~~~~~~~ 524 (531)
++.-.+...+++....++
T Consensus 209 ~D~v~a~~ALeky~~~dP 226 (288)
T KOG1586|consen 209 ADEVNAQRALEKYQELDP 226 (288)
T ss_pred ccHHHHHHHHHHHHhcCC
Confidence 344445555555544443
No 303
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=87.92 E-value=1.8 Score=23.88 Aligned_cols=28 Identities=18% Similarity=0.114 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 038190 442 VTYTVMICGLCIEGGIEKAYDLLPDMEE 469 (531)
Q Consensus 442 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 469 (531)
.+|..+..+|...|++++|+..|++..+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 5688899999999999999988887654
No 304
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=87.85 E-value=24 Score=33.06 Aligned_cols=169 Identities=11% Similarity=0.018 Sum_probs=95.7
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCCCcHHhHHHHHHHHHhcCChhHHHHHHHHHhhCC---------CC
Q 038190 158 VTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRG---------IY 228 (531)
Q Consensus 158 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g---------~~ 228 (531)
..+.-+...|..+|+++.|++.|-+...- +.. ....+..|-.+|..-.-.|+|..+..+..+....- +.
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdY-CTs-~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~ 228 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARDY-CTS-AKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVP 228 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhhh-hcc-hHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcC
Confidence 46777889999999999999999985432 111 11245567778888888899998888887776541 12
Q ss_pred CCHhhHHHHHHHHHhcCChhhhhcchHHHHHHHHHHHhCCCCCCccccCCHhhHHHHHHHHhcCCCHHHHHHH-----HH
Q 038190 229 PDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKEL-----FL 303 (531)
Q Consensus 229 p~~~~~~~li~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~-----~~ 303 (531)
+-...+..+... .++.|..|.+.|-.......+...++.|...+.-..+.+++-.++-+.-..+ |+
T Consensus 229 ~kl~C~agLa~L---------~lkkyk~aa~~fL~~~~~~~d~~~ivtpsdv~iYggLcALAtfdr~~Lk~~vi~n~~Fk 299 (466)
T KOG0686|consen 229 AKLKCAAGLANL---------LLKKYKSAAKYFLLAEFDHCDYPEIVTPSDVAIYGGLCALATFDRQDLKLNVIKNESFK 299 (466)
T ss_pred cchHHHHHHHHH---------HHHHHHHHHHHHHhCCCCccCccceecchhhHHHHhhHhhccCCHHHHHHHHHcchhhh
Confidence 222222222222 2233444443554443333334455666655555556665555443322222 22
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 038190 304 DMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESE 343 (531)
Q Consensus 304 ~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 343 (531)
...+. .+.....+...| .+++....++++++...
T Consensus 300 ~flel----~Pqlr~il~~fy--~sky~~cl~~L~~~k~~ 333 (466)
T KOG0686|consen 300 LFLEL----EPQLREILFKFY--SSKYASCLELLREIKPR 333 (466)
T ss_pred hHHhc----ChHHHHHHHHHh--hhhHHHHHHHHHHhccc
Confidence 22222 344444444444 37788888888887653
No 305
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.84 E-value=17 Score=31.27 Aligned_cols=129 Identities=10% Similarity=0.001 Sum_probs=68.1
Q ss_pred HHhcCChhhhhcchHHHHHHHHHHHhCCCCCCccccCCHhhHHHHHHHHhcC-CCHHHHHHHHHHHHhC--CCCCCHH--
Q 038190 241 YCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKD-VLVDKAKELFLDMKSR--GIIPDVV-- 315 (531)
Q Consensus 241 ~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~-~~~~~a~~~~~~~~~~--~~~~~~~-- 315 (531)
|.+..++.+|...++.|+++|-.|-.-. .-....-.+...|... .+++.|+..|++.-+- |-..+..
T Consensus 83 cykk~~~~eAv~cL~~aieIyt~~Grf~--------~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssAN 154 (288)
T KOG1586|consen 83 CYKKVDPEEAVNCLEKAIEIYTDMGRFT--------MAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSAN 154 (288)
T ss_pred HhhccChHHHHHHHHHHHHHHHhhhHHH--------HHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHH
Confidence 3444566777776777777766654322 1122233444555443 5667777777665442 2122222
Q ss_pred -HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHH---HHH-H--HHhcCCHHHHHHHHHHHHh
Q 038190 316 -VYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNT---LIN-S--YSKIEKVEEALSLYGEMIS 377 (531)
Q Consensus 316 -~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~---li~-~--~~~~~~~~~a~~~~~~~~~ 377 (531)
.+.-+...-+..+++.+|+++|+++....+..+..-|.. ++. + +.-..+.-.+...+++..+
T Consensus 155 KC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~ 223 (288)
T KOG1586|consen 155 KCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQE 223 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHh
Confidence 223333444567899999999999887755444433322 111 1 1222455455555555554
No 306
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=87.49 E-value=40 Score=35.21 Aligned_cols=165 Identities=15% Similarity=0.104 Sum_probs=86.4
Q ss_pred HhcCCCHHHHHHHHHHHHhC----CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHH---HHHHH--HH
Q 038190 289 LCKDVLVDKAKELFLDMKSR----GIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSY---NTLIN--SY 359 (531)
Q Consensus 289 ~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~---~~li~--~~ 359 (531)
....|+++.|.++.+..... -..+....+..+..+..-.|++++|..+.....+..-.-+...+ ..+.. .+
T Consensus 468 al~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il 547 (894)
T COG2909 468 ALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEIL 547 (894)
T ss_pred HHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHH
Confidence 34578889998888776654 23345566677777888889999999888776654222233333 33322 34
Q ss_pred HhcCCHHHH--HHHHHHHHhCCCCCCcccHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHcC-CChHHHHHHHHHhhhC
Q 038190 360 SKIEKVEEA--LSLYGEMISMGVRPDNSCILEAAELFRTLHNTK-FELDLTVFNCLVDGLCKS-WRLRSAWELFKKLPRY 435 (531)
Q Consensus 360 ~~~~~~~~a--~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~ 435 (531)
...|+...+ ...|....... ..+.. ..+-..++..+..++.+. +...+|..-+.-....
T Consensus 548 ~~qGq~~~a~~~~~~~~~~~q~-----------------l~q~~~~~f~~~~r~~ll~~~~r~~~~~~ear~~~~~~~~~ 610 (894)
T COG2909 548 EAQGQVARAEQEKAFNLIREQH-----------------LEQKPRHEFLVRIRAQLLRAWLRLDLAEAEARLGIEVGSVY 610 (894)
T ss_pred HHhhHHHHHHHHHHHHHHHHHH-----------------hhhcccchhHHHHHHHHHHHHHHHhhhhHHhhhcchhhhhc
Confidence 455633222 22222221110 00000 011234556666666651 1222222223222222
Q ss_pred CCCCcHHHHH--HHHHHHHHcCCHHHHHHHHHHHHHH
Q 038190 436 GPEPNVVTYT--VMICGLCIEGGIEKAYDLLPDMEEK 470 (531)
Q Consensus 436 g~~p~~~~~~--~l~~~~~~~g~~~~A~~~~~~~~~~ 470 (531)
...|-...+. .|+..+...|+.++|...++++...
T Consensus 611 ~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l 647 (894)
T COG2909 611 TPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERL 647 (894)
T ss_pred ccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 2222222222 5677778899999998888776554
No 307
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=87.32 E-value=1.8 Score=25.22 Aligned_cols=28 Identities=18% Similarity=0.227 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 038190 441 VVTYTVMICGLCIEGGIEKAYDLLPDME 468 (531)
Q Consensus 441 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 468 (531)
..+++.+...|...|++++|+.++++..
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al 29 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEAL 29 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHH
Confidence 3567788888888898888888886543
No 308
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=87.29 E-value=18 Score=31.02 Aligned_cols=120 Identities=20% Similarity=0.063 Sum_probs=67.5
Q ss_pred cCCHHHHHHHHHHHHhCCCCC-CHhhHHHHHHHHHccCCcchHHHHHHHHHHC-CCCCChhhHHHHHHHHHhcCChHHHH
Q 038190 100 KKYYVNFICLSERLNTIGLLP-DFVSLNILMNCFCKMIGVSDAFVALGRILRK-VFSPDVVTLGCLIRGLCMQGKFTEAS 177 (531)
Q Consensus 100 ~~~~~~a~~~~~~m~~~g~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~a~ 177 (531)
.+.+..+...+.......... ....+......+...+.+..+...+...... ........+......+...+++..+.
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (291)
T COG0457 36 LGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEAL 115 (291)
T ss_pred HhhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHH
Confidence 345555555555555443111 2455666666666777777777777666542 22334455555666666667777777
Q ss_pred HHHHHHHHcCCCCCCCCcHHhHHHHHH-HHHhcCChhHHHHHHHHHhh
Q 038190 178 GLFTKFVAFDCRPNVIPNVICYASIID-GLCKDGFVNKVRVLFLDMKG 224 (531)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~a~~~~~~m~~ 224 (531)
..+.........+ ......... .+...|+++.+...+.+...
T Consensus 116 ~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 158 (291)
T COG0457 116 ELLEKALALDPDP-----DLAEALLALGALYELGDYEEALELYEKALE 158 (291)
T ss_pred HHHHHHHcCCCCc-----chHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 7777776542221 122222222 56667777777777776643
No 309
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=87.18 E-value=1 Score=26.36 Aligned_cols=32 Identities=28% Similarity=0.381 Sum_probs=15.3
Q ss_pred hHHHHHHHHHhcCChhhhhcchHHHHHHHHHH
Q 038190 233 VYNSLIRVYCCAVNWEDAKGNTSAALELHEEF 264 (531)
Q Consensus 233 ~~~~li~~~~~~~~~~~a~~~~~~a~~~~~~~ 264 (531)
+++.+...|...|++++|...+++++.+.+.+
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 35 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEALEIRERL 35 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHHHHHHHH
Confidence 44555555555555555555555555554444
No 310
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=87.05 E-value=29 Score=33.23 Aligned_cols=118 Identities=11% Similarity=0.076 Sum_probs=68.4
Q ss_pred cCCHHHHHHHHHHHHHcCC-CCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCcchHHH
Q 038190 65 EVELNDALCFFNYMIHMQP-TPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFV 143 (531)
Q Consensus 65 ~g~~~~A~~~~~~~~~~~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~ 143 (531)
.|++..|-+-+...++..+ .|+....-+ ..+...|+++.+...+...... +.....+...+++...+.|+++.|..
T Consensus 302 ~gd~~aas~~~~~~lr~~~~~p~~i~l~~--~i~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~~~a~s 378 (831)
T PRK15180 302 DGDIIAASQQLFAALRNQQQDPVLIQLRS--VIFSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARWREALS 378 (831)
T ss_pred ccCHHHHHHHHHHHHHhCCCCchhhHHHH--HHHHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhHHHHHH
Confidence 3466666544333333222 233332222 2344568888887777655432 23345567777888888888888888
Q ss_pred HHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 038190 144 ALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAF 186 (531)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 186 (531)
.-+-|+...++ +..+........-..|-++++.-.|+++...
T Consensus 379 ~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~ 420 (831)
T PRK15180 379 TAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLLL 420 (831)
T ss_pred HHHHHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHHhcc
Confidence 88777776555 3333332222333456677888777777654
No 311
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=86.89 E-value=2 Score=29.41 Aligned_cols=44 Identities=11% Similarity=0.074 Sum_probs=31.4
Q ss_pred hHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHhccCChhHHHhhH
Q 038190 473 ECLKAIELLHKMAKRYVKPD--EITVSILEELLNKDENCHECMNLL 516 (531)
Q Consensus 473 ~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~ 516 (531)
+.++|+..|.+.++.-..+. ..++.+++.+|+..|++.+++++.
T Consensus 21 ~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA 66 (80)
T PF10579_consen 21 ETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFA 66 (80)
T ss_pred hHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566677777765443333 257888999999999999988764
No 312
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=86.73 E-value=15 Score=29.56 Aligned_cols=52 Identities=12% Similarity=-0.116 Sum_probs=27.3
Q ss_pred HccCCcchHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 038190 133 CKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVA 185 (531)
Q Consensus 133 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 185 (531)
.+.++.+++..+++.+.-..+. ....-..-...+...|++.+|+.+|+++..
T Consensus 21 l~~~~~~D~e~lL~ALrvLRP~-~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~ 72 (160)
T PF09613_consen 21 LRLGDPDDAEALLDALRVLRPE-FPELDLFDGWLHIVRGDWDDALRLLRELEE 72 (160)
T ss_pred HccCChHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHhCCHHHHHHHHHHHhc
Confidence 3455666666666666554322 111112223345566667777777666654
No 313
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.70 E-value=7.6 Score=34.77 Aligned_cols=102 Identities=12% Similarity=0.152 Sum_probs=65.8
Q ss_pred CCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCC---CCCCHhhHHHHHHHHHccCCcchHHHHHHHHHHCCCCCChhh
Q 038190 83 PTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIG---LLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVT 159 (531)
Q Consensus 83 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g---~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 159 (531)
...++.+-..++..-....+++.+...+-++.... ..++. +-..+++.|.+ -++++++.++..-++.|+-||.++
T Consensus 60 ~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~-~~~~~irlllk-y~pq~~i~~l~npIqYGiF~dqf~ 137 (418)
T KOG4570|consen 60 LPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNW-TIHTWIRLLLK-YDPQKAIYTLVNPIQYGIFPDQFT 137 (418)
T ss_pred CCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccc-cHHHHHHHHHc-cChHHHHHHHhCcchhccccchhh
Confidence 33455556666666666677788877777665431 11221 22233333333 366678888877788888888888
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHc
Q 038190 160 LGCLIRGLCMQGKFTEASGLFTKFVAF 186 (531)
Q Consensus 160 ~~~li~~~~~~g~~~~a~~~~~~~~~~ 186 (531)
++.+|+.+.+.+++.+|.++...|+..
T Consensus 138 ~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 138 FCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 888888888888888888777666643
No 314
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=86.60 E-value=10 Score=27.59 Aligned_cols=61 Identities=7% Similarity=0.041 Sum_probs=43.7
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHhhhCCCCCcHHHHHHHHHH
Q 038190 389 EAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICG 450 (531)
Q Consensus 389 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~ 450 (531)
+..+-+..+......|++.+..+.+++|.+.+++..|.++|+-.+.+ +.+....|..+++-
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K-~~~~~~~Y~~~lqE 88 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDK-CGNKKEIYPYILQE 88 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TTT-TTHHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-ccChHHHHHHHHHH
Confidence 45556667778888999999999999999999999999999998864 22333367666643
No 315
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=86.56 E-value=2.6 Score=23.13 Aligned_cols=28 Identities=14% Similarity=0.105 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 038190 442 VTYTVMICGLCIEGGIEKAYDLLPDMEE 469 (531)
Q Consensus 442 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 469 (531)
..|..+..++...|++++|++.|++..+
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 4577788899999999999988877654
No 316
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=86.43 E-value=23 Score=31.39 Aligned_cols=89 Identities=12% Similarity=-0.012 Sum_probs=61.4
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh--
Q 038190 284 SIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSK-- 361 (531)
Q Consensus 284 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~-- 361 (531)
.=|.+++..++|.+++...-+.-+.--+....+...-|-.|.+.|.+..+.++-....+.--.-+..-|..+++.|..
T Consensus 88 vGIQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~V 167 (309)
T PF07163_consen 88 VGIQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHV 167 (309)
T ss_pred hhHHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHH
Confidence 347889999999988765544333211223445555566699999999999998887765323344558777777654
Q ss_pred ---cCCHHHHHHHH
Q 038190 362 ---IEKVEEALSLY 372 (531)
Q Consensus 362 ---~~~~~~a~~~~ 372 (531)
.|.+++|.++.
T Consensus 168 LlPLG~~~eAeelv 181 (309)
T PF07163_consen 168 LLPLGHFSEAEELV 181 (309)
T ss_pred HhccccHHHHHHHH
Confidence 69999998876
No 317
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=86.14 E-value=34 Score=33.17 Aligned_cols=63 Identities=11% Similarity=0.026 Sum_probs=37.4
Q ss_pred HHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHhhhCCCCCcHHHHHHHHHHH
Q 038190 388 LEAAELFRTLH-NTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGL 451 (531)
Q Consensus 388 ~~a~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~ 451 (531)
+..+.+...+. +.|...-...+.-+-.-|....++++|.+++..+.+.. ..|...-..++.-+
T Consensus 186 D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~~eN~~eai~Ilk~il~~d-~k~~~ar~~~i~~l 249 (711)
T COG1747 186 DFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSENENWTEAIRILKHILEHD-EKDVWARKEIIENL 249 (711)
T ss_pred HHHHHHHHHHHHhhccchHHHHHHHHHHHhccccCHHHHHHHHHHHhhhc-chhhhHHHHHHHHH
Confidence 33444444443 23333345566666678888999999999999887753 22444444444433
No 318
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=85.66 E-value=13 Score=33.43 Aligned_cols=101 Identities=16% Similarity=0.182 Sum_probs=71.1
Q ss_pred cCCHhhHHHHHHHHhcCCCHHHHHHHHHHHHhCC---CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHH
Q 038190 276 HPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRG---IIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSY 352 (531)
Q Consensus 276 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~ 352 (531)
+.+..+...++..-....+++.+..++-+++..- ..++. +-...++.+. .-++++++.++..=++.|+-||..++
T Consensus 61 ~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~-~~~~~irlll-ky~pq~~i~~l~npIqYGiF~dqf~~ 138 (418)
T KOG4570|consen 61 PVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNW-TIHTWIRLLL-KYDPQKAIYTLVNPIQYGIFPDQFTF 138 (418)
T ss_pred CcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccc-cHHHHHHHHH-ccChHHHHHHHhCcchhccccchhhH
Confidence 3445555566666666778888888887776541 11221 1122333333 45677999998888899999999999
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhC
Q 038190 353 NTLINSYSKIEKVEEALSLYGEMISM 378 (531)
Q Consensus 353 ~~li~~~~~~~~~~~a~~~~~~~~~~ 378 (531)
+.+|+.+.+.+++.+|..+...|+..
T Consensus 139 c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 139 CLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 99999999999999998887777653
No 319
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=85.40 E-value=25 Score=30.87 Aligned_cols=188 Identities=13% Similarity=0.086 Sum_probs=118.6
Q ss_pred cCCHHHHHHHHHHHHHcCCCCC---hhhHHHHHHHHHccCCHHHHHHHHHHHHh---CCCC--CCHhhHHHHHHHHHccC
Q 038190 65 EVELNDALCFFNYMIHMQPTPF---MPSFNSLLGALAGKKYYVNFICLSERLNT---IGLL--PDFVSLNILMNCFCKMI 136 (531)
Q Consensus 65 ~g~~~~A~~~~~~~~~~~~~~~---~~~~~~li~~~~~~~~~~~a~~~~~~m~~---~g~~--~~~~~~~~li~~~~~~g 136 (531)
...+++|+.-|+..++...... -.+...+|....+.+++++..+.|.+|+. ..+. -+....|.++.......
T Consensus 40 e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~ 119 (440)
T KOG1464|consen 40 EDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSK 119 (440)
T ss_pred ccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhh
Confidence 3489999999999988554322 33556678889999999999999888853 1111 24556778887777666
Q ss_pred CcchHHHHHHHHHHCC-CCCChh----hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCC-------CcHHhHHHHHH
Q 038190 137 GVSDAFVALGRILRKV-FSPDVV----TLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVI-------PNVICYASIID 204 (531)
Q Consensus 137 ~~~~a~~~~~~~~~~~-~~~~~~----~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-------~~~~~~~~l~~ 204 (531)
+.+.....|+.-++.- -.-+.. +-..|...|...|++....++++++...-...+.. .-...|..=|.
T Consensus 120 ~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQ 199 (440)
T KOG1464|consen 120 NMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQ 199 (440)
T ss_pred hhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhh
Confidence 6666555555433210 001111 33457778888889999889988887543222211 12346777788
Q ss_pred HHHhcCChhHHHHHHHHHhhC-CCCCCHhhHHHHHHHH-----HhcCChhhhhcc
Q 038190 205 GLCKDGFVNKVRVLFLDMKGR-GIYPDAFVYNSLIRVY-----CCAVNWEDAKGN 253 (531)
Q Consensus 205 ~~~~~~~~~~a~~~~~~m~~~-g~~p~~~~~~~li~~~-----~~~~~~~~a~~~ 253 (531)
.|....+-.....+|++...- .-.|.+... .+|+-| .+.|.+++|...
T Consensus 200 mYT~qKnNKkLK~lYeqalhiKSAIPHPlIm-GvIRECGGKMHlreg~fe~AhTD 253 (440)
T KOG1464|consen 200 MYTEQKNNKKLKALYEQALHIKSAIPHPLIM-GVIRECGGKMHLREGEFEKAHTD 253 (440)
T ss_pred hhhhhcccHHHHHHHHHHHHhhccCCchHHH-hHHHHcCCccccccchHHHHHhH
Confidence 898888888888888876532 223344333 233333 345666666553
No 320
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=85.30 E-value=12 Score=31.43 Aligned_cols=22 Identities=14% Similarity=0.099 Sum_probs=12.2
Q ss_pred CCHHHHHHHHHHHHcCCChHHH
Q 038190 404 LDLTVFNCLVDGLCKSWRLRSA 425 (531)
Q Consensus 404 ~~~~~~~~l~~~~~~~g~~~~A 425 (531)
+|+..+.+|+..|.+.|+++.|
T Consensus 176 ~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 176 FNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred CCHHHHHHHHHHHHHhcchhhh
Confidence 3555555555555555555554
No 321
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=85.30 E-value=7.6 Score=27.93 Aligned_cols=45 Identities=13% Similarity=0.055 Sum_probs=21.7
Q ss_pred HHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCcchHHHHHHHHH
Q 038190 105 NFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRIL 149 (531)
Q Consensus 105 ~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 149 (531)
++.+-++.+....+.|++.+..+.+++|.+.+|+..|..+++-++
T Consensus 25 e~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK 69 (103)
T cd00923 25 ELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIK 69 (103)
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 333444444444444555555555555555555555555555443
No 322
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=85.27 E-value=17 Score=32.47 Aligned_cols=145 Identities=12% Similarity=0.129 Sum_probs=101.2
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHh-CCCCCCHhhHHHHHHHHHc-cC-CcchHHHHHHHHHH-CCCCCChhhHHHHHH
Q 038190 90 FNSLLGALAGKKYYVNFICLSERLNT-IGLLPDFVSLNILMNCFCK-MI-GVSDAFVALGRILR-KVFSPDVVTLGCLIR 165 (531)
Q Consensus 90 ~~~li~~~~~~~~~~~a~~~~~~m~~-~g~~~~~~~~~~li~~~~~-~g-~~~~a~~~~~~~~~-~~~~~~~~~~~~li~ 165 (531)
|..|+. ++..+.+|+.+|+.... ..+--|..+...+++.... .+ ....-.++.+.+.. .+-.++..+...++.
T Consensus 134 Y~~LVk---~N~~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~ 210 (292)
T PF13929_consen 134 YWDLVK---RNKIVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILE 210 (292)
T ss_pred HHHHHH---hhHHHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHH
Confidence 555553 34567889999985432 2355688888888887765 22 23333344444443 234678888889999
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCCCCCcHHhHHHHHHHHHhcCChhHHHHHHHH-----HhhCCCCCCHhhHHHHHHH
Q 038190 166 GLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLD-----MKGRGIYPDAFVYNSLIRV 240 (531)
Q Consensus 166 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~-----m~~~g~~p~~~~~~~li~~ 240 (531)
.++..+++..-.++++....... | ..|...|..+|......|+..-...+.++ ++..|+..+...-..+-..
T Consensus 211 ~L~~~~dW~kl~~fW~~~~~~~~-~--~~D~rpW~~FI~li~~sgD~~~~~kiI~~GhLLwikR~~V~v~~~L~~~L~~L 287 (292)
T PF13929_consen 211 ILAESRDWNKLFQFWEQCIPNSV-P--GNDPRPWAEFIKLIVESGDQEVMRKIIDDGHLLWIKRNNVDVTDELRSQLSEL 287 (292)
T ss_pred HHHhcccHHHHHHHHHHhcccCC-C--CCCCchHHHHHHHHHHcCCHHHHHHHhhCCCeEEeeecCCcCCHHHHHHHHHH
Confidence 99999999999999988876411 1 24888899999999999999999999986 3556777666554444433
No 323
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=85.04 E-value=46 Score=33.67 Aligned_cols=147 Identities=7% Similarity=-0.052 Sum_probs=73.7
Q ss_pred HHHHHHHHHHHHHcCCCCChhhHHHHHH--H-HHccCCHHHHHHHHHHHHh-------CCCCCCHhhHHHHHHHHHccC-
Q 038190 68 LNDALCFFNYMIHMQPTPFMPSFNSLLG--A-LAGKKYYVNFICLSERLNT-------IGLLPDFVSLNILMNCFCKMI- 136 (531)
Q Consensus 68 ~~~A~~~~~~~~~~~~~~~~~~~~~li~--~-~~~~~~~~~a~~~~~~m~~-------~g~~~~~~~~~~li~~~~~~g- 136 (531)
...|...++.....|.. .......++. + +....|.+.|+..|+.+.+ .| .......+..+|.+..
T Consensus 228 ~~~a~~~~~~~a~~g~~-~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~ 303 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGHS-EAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLG 303 (552)
T ss_pred hhHHHHHHHHHHhhcch-HHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCC
Confidence 56777788777765532 1111122222 2 3456678888888887766 33 3334555555555532
Q ss_pred ----CcchHHHHHHHHHHCCCCCChhhHHHHHHHHHh-cCChHHHHHHHHHHHHcCCCCCCCCcHHhHHHHHHHHH----
Q 038190 137 ----GVSDAFVALGRILRKVFSPDVVTLGCLIRGLCM-QGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLC---- 207 (531)
Q Consensus 137 ----~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~-~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---- 207 (531)
+.+.|..+|...-+.|.+ +....-..+..... ..+...|.++|......|.. .++-.+...|.
T Consensus 304 ~~~~d~~~A~~~~~~aA~~g~~-~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~-------~A~~~la~~y~~G~g 375 (552)
T KOG1550|consen 304 VEKIDYEKALKLYTKAAELGNP-DAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHI-------LAIYRLALCYELGLG 375 (552)
T ss_pred CccccHHHHHHHHHHHHhcCCc-hHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCCh-------HHHHHHHHHHHhCCC
Confidence 445566666666666522 33222222211111 13456677777666655422 12212222111
Q ss_pred hcCChhHHHHHHHHHhhCC
Q 038190 208 KDGFVNKVRVLFLDMKGRG 226 (531)
Q Consensus 208 ~~~~~~~a~~~~~~m~~~g 226 (531)
-..+...|..++.+..+.|
T Consensus 376 v~r~~~~A~~~~k~aA~~g 394 (552)
T KOG1550|consen 376 VERNLELAFAYYKKAAEKG 394 (552)
T ss_pred cCCCHHHHHHHHHHHHHcc
Confidence 1235666666666666665
No 324
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=84.74 E-value=51 Score=33.88 Aligned_cols=102 Identities=9% Similarity=0.003 Sum_probs=53.6
Q ss_pred HHHHHccCCHHHHHHHHHHHHhCCCCC---CHhhHHHHHHHHHccCCcchHHHHHHHHHHCCCCCChhhHHHHHHHHHhc
Q 038190 94 LGALAGKKYYVNFICLSERLNTIGLLP---DFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQ 170 (531)
Q Consensus 94 i~~~~~~~~~~~a~~~~~~m~~~g~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 170 (531)
+..+.+.+.+++|+++.+..... .+ -.......|..+.-.|+++.|-...-.|... +..-|.--+..++..
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~~~--~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn----~~~eWe~~V~~f~e~ 436 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASIGN--EERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGN----NAAEWELWVFKFAEL 436 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhccCC--ccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcc----hHHHHHHHHHHhccc
Confidence 34555666777777766654422 33 2234556666666667777776666666533 455555555555555
Q ss_pred CChHHHHHHHHHHHHcCCCCCCCCcHHhHHHHHHHHHh
Q 038190 171 GKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCK 208 (531)
Q Consensus 171 g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 208 (531)
++......+ +.. + .| ..+...|..++..+..
T Consensus 437 ~~l~~Ia~~---lPt-~-~~--rL~p~vYemvLve~L~ 467 (846)
T KOG2066|consen 437 DQLTDIAPY---LPT-G-PP--RLKPLVYEMVLVEFLA 467 (846)
T ss_pred cccchhhcc---CCC-C-Cc--ccCchHHHHHHHHHHH
Confidence 554332221 111 1 11 1244566666666665
No 325
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=84.42 E-value=13 Score=31.22 Aligned_cols=56 Identities=9% Similarity=-0.101 Sum_probs=45.9
Q ss_pred CCHHHHHHHHHHHHcCCChHHHHHHHHHhhh---CCCCCcHHHHHHHHHHHHHcCCHHHH
Q 038190 404 LDLTVFNCLVDGLCKSWRLRSAWELFKKLPR---YGPEPNVVTYTVMICGLCIEGGIEKA 460 (531)
Q Consensus 404 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~g~~p~~~~~~~l~~~~~~~g~~~~A 460 (531)
-++...-.|...|. ..+.+++..++.+..+ .+-.+|+..+..|+..+.+.|+++.|
T Consensus 139 ~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 139 ETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred CCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 36777777777776 6688999999998876 23367899999999999999999987
No 326
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=84.35 E-value=30 Score=30.94 Aligned_cols=137 Identities=15% Similarity=0.054 Sum_probs=81.8
Q ss_pred cCChhHHHHHHHHHhh-CCCCCCHhhHHHHHHHHHhcCChhhhhcchHHHHHHHHHHHhCCCCCCccccCCHhhHHHHHH
Q 038190 209 DGFVNKVRVLFLDMKG-RGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIIN 287 (531)
Q Consensus 209 ~~~~~~a~~~~~~m~~-~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~ 287 (531)
+..+.+|+++|+.... ..+--|..+...+++......+. -.. .-.++.+.+...-+ -.++..+...++.
T Consensus 141 N~~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~--~l~---alYEvV~~l~~t~~-----~~l~~~vi~~Il~ 210 (292)
T PF13929_consen 141 NKIVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENT--KLN---ALYEVVDFLVSTFS-----KSLTRNVIISILE 210 (292)
T ss_pred hHHHHHHHHHhhccCcccceeeChHHHHHHHHHHHhcccc--chh---hHHHHHHHHHhccc-----cCCChhHHHHHHH
Confidence 3345666666663222 22444666677777666552221 111 11123333333211 2466667778888
Q ss_pred HHhcCCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH-----HHhcCCCCCHHHHHHH
Q 038190 288 SLCKDVLVDKAKELFLDMKSR-GIIPDVVVYSSLIDGYCLMGRIDDARKLFVS-----IESEGCIPDTSSYNTL 355 (531)
Q Consensus 288 ~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~-----~~~~g~~p~~~~~~~l 355 (531)
.++..+++..-.++++..... +..-|...|..+|....+.|+..-..++.++ +.+.|+..+...-..+
T Consensus 211 ~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~GhLLwikR~~V~v~~~L~~~L 284 (292)
T PF13929_consen 211 ILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDDGHLLWIKRNNVDVTDELRSQL 284 (292)
T ss_pred HHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhCCCeEEeeecCCcCCHHHHHHH
Confidence 888999998888888776655 5566788888888888888888777766654 2344444444443333
No 327
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=83.91 E-value=4.2 Score=24.39 Aligned_cols=23 Identities=22% Similarity=0.232 Sum_probs=12.2
Q ss_pred HHHHHHcCCChHHHHHHHHHhhh
Q 038190 412 LVDGLCKSWRLRSAWELFKKLPR 434 (531)
Q Consensus 412 l~~~~~~~g~~~~A~~~~~~~~~ 434 (531)
|..+|...|+.+.|.+++++...
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHH
Confidence 44555555555555555555543
No 328
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=83.90 E-value=36 Score=31.53 Aligned_cols=151 Identities=9% Similarity=-0.048 Sum_probs=93.5
Q ss_pred HHHHHHHcCCCCChhhHHHHHHHHH---ccC---------CHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCcchH
Q 038190 74 FFNYMIHMQPTPFMPSFNSLLGALA---GKK---------YYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDA 141 (531)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~li~~~~---~~~---------~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a 141 (531)
-|++..+.+|. |+.+|-.++..-- ..+ -.+.-+.++++.++.+ +.+...+...+..+.+..+.+..
T Consensus 7 el~~~v~~~P~-di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~n-p~~~~L~l~~l~~~~~~~~~~~l 84 (321)
T PF08424_consen 7 ELNRRVRENPH-DIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHN-PDSERLLLGYLEEGEKVWDSEKL 84 (321)
T ss_pred HHHHHHHhCcc-cHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHH
Confidence 35555565565 7888888875422 111 1456678888888875 46677788888888888888888
Q ss_pred HHHHHHHHHCCCCCChhhHHHHHHHHHhc---CChHHHHHHHHHHHHc------CCCCCCCCcHH-------hHHHHHHH
Q 038190 142 FVALGRILRKVFSPDVVTLGCLIRGLCMQ---GKFTEASGLFTKFVAF------DCRPNVIPNVI-------CYASIIDG 205 (531)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~---g~~~~a~~~~~~~~~~------~~~~~~~~~~~-------~~~~l~~~ 205 (531)
.+.++.++...+. +...|...+...... -.++....+|.+.... +......+-.. .+.-+...
T Consensus 85 ~~~we~~l~~~~~-~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~f 163 (321)
T PF08424_consen 85 AKKWEELLFKNPG-SPELWREYLDFRQSNFASFTVSDVRDVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRF 163 (321)
T ss_pred HHHHHHHHHHCCC-ChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHH
Confidence 8999999887433 677888877665542 2455666666554321 10000001111 22223334
Q ss_pred HHhcCChhHHHHHHHHHhhCCC
Q 038190 206 LCKDGFVNKVRVLFLDMKGRGI 227 (531)
Q Consensus 206 ~~~~~~~~~a~~~~~~m~~~g~ 227 (531)
+..+|..+.|..+++-+.+.++
T Consensus 164 l~~aG~~E~Ava~~Qa~lE~n~ 185 (321)
T PF08424_consen 164 LRQAGYTERAVALWQALLEFNF 185 (321)
T ss_pred HHHCCchHHHHHHHHHHHHHHc
Confidence 4567888888888888877543
No 329
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=83.85 E-value=1.3 Score=22.84 Aligned_cols=24 Identities=21% Similarity=0.119 Sum_probs=20.1
Q ss_pred HHHHHHHHHhccCChhHHHhhHHH
Q 038190 495 TVSILEELLNKDENCHECMNLLPS 518 (531)
Q Consensus 495 ~~~~l~~~~~~~g~~~~a~~~~~~ 518 (531)
....+..++...|+.++|.+++++
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l~~ 26 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLLRR 26 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHhC
Confidence 345688999999999999998863
No 330
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=83.71 E-value=20 Score=28.39 Aligned_cols=50 Identities=14% Similarity=-0.034 Sum_probs=23.9
Q ss_pred cCCcchHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 038190 135 MIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVA 185 (531)
Q Consensus 135 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 185 (531)
.++++++..+++.+.-..+. ....-..-...+...|++++|+++|+++..
T Consensus 23 ~~d~~D~e~lLdALrvLrP~-~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~ 72 (153)
T TIGR02561 23 SADPYDAQAMLDALRVLRPN-LKELDMFDGWLLIARGNYDEAARILRELLS 72 (153)
T ss_pred cCCHHHHHHHHHHHHHhCCC-ccccchhHHHHHHHcCCHHHHHHHHHhhhc
Confidence 45555555555555544221 111111122334555666666666666654
No 331
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=83.55 E-value=57 Score=33.53 Aligned_cols=96 Identities=8% Similarity=-0.019 Sum_probs=62.4
Q ss_pred CHHHHHHHHHHHHHcCCCC-ChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCcchHHHHH
Q 038190 67 ELNDALCFFNYMIHMQPTP-FMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVAL 145 (531)
Q Consensus 67 ~~~~A~~~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~ 145 (531)
.+++|+..-+.....-+.. -...+...|..+...|++++|-...-.|... +..-|..-+..+...++......
T Consensus 371 ~yeeAl~~~k~~~~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn----~~~eWe~~V~~f~e~~~l~~Ia~-- 444 (846)
T KOG2066|consen 371 KYEEALDAAKASIGNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGN----NAAEWELWVFKFAELDQLTDIAP-- 444 (846)
T ss_pred HHHHHHHHHHhccCCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcc----hHHHHHHHHHHhccccccchhhc--
Confidence 7888887776654321110 3457888899999999999999998888743 56677777777777666554432
Q ss_pred HHHHHCCCCCChhhHHHHHHHHHh
Q 038190 146 GRILRKVFSPDVVTLGCLIRGLCM 169 (531)
Q Consensus 146 ~~~~~~~~~~~~~~~~~li~~~~~ 169 (531)
-+.......+..+|..++..+..
T Consensus 445 -~lPt~~~rL~p~vYemvLve~L~ 467 (846)
T KOG2066|consen 445 -YLPTGPPRLKPLVYEMVLVEFLA 467 (846)
T ss_pred -cCCCCCcccCchHHHHHHHHHHH
Confidence 22222222455677777766665
No 332
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=83.26 E-value=1e+02 Score=36.35 Aligned_cols=301 Identities=10% Similarity=-0.057 Sum_probs=156.4
Q ss_pred HHHHHHHccCCcchHHHHHHHH----HHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCCCcHHhHHHH
Q 038190 127 ILMNCFCKMIGVSDAFVALGRI----LRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASI 202 (531)
Q Consensus 127 ~li~~~~~~g~~~~a~~~~~~~----~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l 202 (531)
.+..+-.+++.+..|...+++- ++. ......+..+...|+..+++|....+...... . . .....
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~--~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a---~------~-sl~~q 1455 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEK--ETEEALYFLLQNLYGSIHDPDGVEGVSARRFA---D------P-SLYQQ 1455 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchh--HHHHHHHHHHHHHHHhcCCcchhhhHHHHhhc---C------c-cHHHH
Confidence 4445566778888998888873 222 11223444455589999999988887764222 1 1 23344
Q ss_pred HHHHHhcCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChhhhhcchHHHHHHHHHHHhCCCCCCccccCCHhhH
Q 038190 203 IDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSY 282 (531)
Q Consensus 203 ~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (531)
+......|++..|...|+.+.+.+.. ...+++.++......+.+....- ..+...... .+....+
T Consensus 1456 il~~e~~g~~~da~~Cye~~~q~~p~-~~~~~~g~l~sml~~~~l~t~i~-------~~dg~~~~~-------se~~~~~ 1520 (2382)
T KOG0890|consen 1456 ILEHEASGNWADAAACYERLIQKDPD-KEKHHSGVLKSMLAIQHLSTEIL-------HLDGLIINR-------SEEVDEL 1520 (2382)
T ss_pred HHHHHhhccHHHHHHHHHHhhcCCCc-cccchhhHHHhhhcccchhHHHh-------hhcchhhcc-------CHHHHHH
Confidence 55567789999999999999876322 35567766666555555554443 333222221 1222223
Q ss_pred HHH-HHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHH--HHHHHh--cCCHHHHHHHHHHHHhc--------CCC-CC
Q 038190 283 CSI-INSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSL--IDGYCL--MGRIDDARKLFVSIESE--------GCI-PD 348 (531)
Q Consensus 283 ~~l-l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l--l~~~~~--~g~~~~a~~~~~~~~~~--------g~~-p~ 348 (531)
+.+ +.+--+.++++.....+. +. +..+|... .....+ ..|.-.-.+..+.+.+. +.. .-
T Consensus 1521 ~s~~~eaaW~l~qwD~~e~~l~---~~----n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy 1593 (2382)
T KOG0890|consen 1521 NSLGVEAAWRLSQWDLLESYLS---DR----NIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSY 1593 (2382)
T ss_pred HHHHHHHHhhhcchhhhhhhhh---cc----cccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchH
Confidence 322 344467777777766654 11 11222222 111111 11211111222222211 000 01
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--------------------cccHHHHHHHHHHHHhCCCC-----
Q 038190 349 TSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD--------------------NSCILEAAELFRTLHNTKFE----- 403 (531)
Q Consensus 349 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~--------------------~~~~~~a~~~~~~~~~~~~~----- 403 (531)
...|..++....-...-.... .+ .++.++ -...+-.+.+-+.+......
T Consensus 1594 ~~~Y~~~~kLH~l~el~~~~~----~l--~~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~ 1667 (2382)
T KOG0890|consen 1594 VRSYEILMKLHLLLELENSIE----EL--KKVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKS 1667 (2382)
T ss_pred HHHHHHHHHHHHHHHHHHHHH----Hh--hccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccc
Confidence 123333333322111000000 00 011111 00111112222222222112
Q ss_pred CCHHHHHHHHHHHHcCCChHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 038190 404 LDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK 470 (531)
Q Consensus 404 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 470 (531)
--..+|-...+....+|.++.|...+-...+.+ -+..+-....-+...|+...|+.++++..+.
T Consensus 1668 ~~ge~wLqsAriaR~aG~~q~A~nall~A~e~r---~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~ 1731 (2382)
T KOG0890|consen 1668 RLGECWLQSARIARLAGHLQRAQNALLNAKESR---LPEIVLERAKLLWQTGDELNALSVLQEILSK 1731 (2382)
T ss_pred hhHHHHHHHHHHHHhcccHHHHHHHHHhhhhcc---cchHHHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence 135678888999999999999998887777754 3345566777788999999999999988865
No 333
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=82.12 E-value=65 Score=33.13 Aligned_cols=58 Identities=16% Similarity=-0.083 Sum_probs=34.8
Q ss_pred cCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCC-------HHHHHHHHHHHHhCCCCCCHh
Q 038190 65 EVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKY-------YVNFICLSERLNTIGLLPDFV 123 (531)
Q Consensus 65 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~-------~~~a~~~~~~m~~~g~~~~~~ 123 (531)
.|++++|.++.+..... .......+-..+..|....+ -++...-|++..+.....|++
T Consensus 124 ~G~~~~A~~~~~~~~~~-~~~~~~~f~~~l~~~~~s~~~~l~~~~~~~l~~ey~~~~r~~~~~Dpy 188 (613)
T PF04097_consen 124 CGDYDEALEVANENRNQ-FQKIERSFPTYLKAYASSPDRRLPPELRDKLKLEYNQRIRNSTDGDPY 188 (613)
T ss_dssp TT-HHHHHHHHHHTGGG-S-TTTTHHHHHHHHCTTTTSS---TCCCHHHHHHHHHHTTT-TTS-HH
T ss_pred cCCHHHHHHHHHHhhhh-hcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhcCCCCCChH
Confidence 45999999999555443 33345677788888876533 236666777776654333554
No 334
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=82.11 E-value=4.8 Score=22.06 Aligned_cols=26 Identities=15% Similarity=0.028 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH
Q 038190 443 TYTVMICGLCIEGGIEKAYDLLPDME 468 (531)
Q Consensus 443 ~~~~l~~~~~~~g~~~~A~~~~~~~~ 468 (531)
+|..+...|...|++++|.+.|++..
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~ 28 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKAL 28 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 45666667777777777777776544
No 335
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=81.94 E-value=27 Score=28.70 Aligned_cols=69 Identities=22% Similarity=0.280 Sum_probs=40.9
Q ss_pred CCCCH-hhHHHHHHHHHhc----CChhhhhcchHHHHHHHHHHHhCCCCCCccccCCHhhHHHHHHHHhcCCCHHHHHHH
Q 038190 227 IYPDA-FVYNSLIRVYCCA----VNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKEL 301 (531)
Q Consensus 227 ~~p~~-~~~~~li~~~~~~----~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~ 301 (531)
+.|+. .++..+..+|... .+..++...+++|.+.|+...... |+...|+.-+... ++|-++
T Consensus 64 I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~~--------P~ne~Y~ksLe~~------~kap~l 129 (186)
T PF06552_consen 64 INPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDED--------PNNELYRKSLEMA------AKAPEL 129 (186)
T ss_dssp H-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH---------TT-HHHHHHHHHH------HTHHHH
T ss_pred cCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhcC--------CCcHHHHHHHHHH------HhhHHH
Confidence 34543 4555555555443 344566677888888888877744 7888888777776 345666
Q ss_pred HHHHHhCC
Q 038190 302 FLDMKSRG 309 (531)
Q Consensus 302 ~~~~~~~~ 309 (531)
+.++.+.+
T Consensus 130 h~e~~~~~ 137 (186)
T PF06552_consen 130 HMEIHKQG 137 (186)
T ss_dssp HHHHHHSS
T ss_pred HHHHHHHH
Confidence 66666654
No 336
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=81.79 E-value=1.9 Score=23.51 Aligned_cols=30 Identities=13% Similarity=0.216 Sum_probs=23.0
Q ss_pred HHHHHHHHhccCChhHHHhhHHHhhhcchh
Q 038190 496 VSILEELLNKDENCHECMNLLPSFLSRNQE 525 (531)
Q Consensus 496 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 525 (531)
+-.++.++.+.|++++|.+.++++...-+.
T Consensus 3 ~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 3 LYRLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 345778888889999999999888766543
No 337
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=81.19 E-value=3.9 Score=22.45 Aligned_cols=28 Identities=18% Similarity=0.061 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHcCCChHHHHHHHHHhhh
Q 038190 407 TVFNCLVDGLCKSWRLRSAWELFKKLPR 434 (531)
Q Consensus 407 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 434 (531)
.+|..+...|...|++++|...|++..+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 4678889999999999999999999886
No 338
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=81.17 E-value=24 Score=31.31 Aligned_cols=119 Identities=15% Similarity=0.145 Sum_probs=0.0
Q ss_pred HHHHHHcCCChHHHHHHHHHhhhCCCCCc-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-------------
Q 038190 412 LVDGLCKSWRLRSAWELFKKLPRYGPEPN-------VVTYTVMICGLCIEGGIEKAYDLLPDMEEKI------------- 471 (531)
Q Consensus 412 l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~i------------- 471 (531)
+.+-..+.+++++|...+.++...|+..+ ..+...+...|.+.|++..--++.....+.+
T Consensus 9 ~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~Kiir 88 (421)
T COG5159 9 LANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKIIR 88 (421)
T ss_pred HHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHHHH
Q ss_pred ----------hhHHHHHHHHHHHHHcCCCCCHHHHHH-----HHHHHhccCChhHHHhhHHHhhhcchhhhhcc
Q 038190 472 ----------RECLKAIELLHKMAKRYVKPDEITVSI-----LEELLNKDENCHECMNLLPSFLSRNQEESKLT 530 (531)
Q Consensus 472 ----------~~~~~a~~~~~~~~~~~~~~~~~~~~~-----l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 530 (531)
..++.-+.+....++...+-....+.. ++.++.+.|++.+|..++..+..+=..-++.+
T Consensus 89 tLiekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~ 162 (421)
T COG5159 89 TLIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLLHELKKYDDKI 162 (421)
T ss_pred HHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCcc
No 339
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=81.12 E-value=0.54 Score=37.41 Aligned_cols=85 Identities=12% Similarity=0.144 Sum_probs=65.2
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC
Q 038190 284 SIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIE 363 (531)
Q Consensus 284 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~~ 363 (531)
.++..+.+.+.+.....+++.+...+...+....+.++..|++.++.++..++++.. +..-...++..|.+.|
T Consensus 12 ~vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~-------~~yd~~~~~~~c~~~~ 84 (143)
T PF00637_consen 12 EVISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTS-------NNYDLDKALRLCEKHG 84 (143)
T ss_dssp CCHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSS-------SSS-CTHHHHHHHTTT
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccc-------cccCHHHHHHHHHhcc
Confidence 356777788889999999999998776678899999999999998888888877621 2233356778888888
Q ss_pred CHHHHHHHHHHH
Q 038190 364 KVEEALSLYGEM 375 (531)
Q Consensus 364 ~~~~a~~~~~~~ 375 (531)
.++.+.-++.++
T Consensus 85 l~~~a~~Ly~~~ 96 (143)
T PF00637_consen 85 LYEEAVYLYSKL 96 (143)
T ss_dssp SHHHHHHHHHCC
T ss_pred hHHHHHHHHHHc
Confidence 888888888765
No 340
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=81.07 E-value=34 Score=29.20 Aligned_cols=228 Identities=16% Similarity=0.042 Sum_probs=151.9
Q ss_pred cCCcchHHHHHHHHHHCCCC-CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCCCcHHhHHHHHHHHHhcCChh
Q 038190 135 MIGVSDAFVALGRILRKVFS-PDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVN 213 (531)
Q Consensus 135 ~g~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 213 (531)
.+....+...+......... .....+......+...+++..+...+.........+ .....+......+...+++.
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~ 112 (291)
T COG0457 36 LGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLP---NLAEALLNLGLLLEALGKYE 112 (291)
T ss_pred HhhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhcc---chHHHHHHHHHHHHHHhhHH
Confidence 34555566666666555322 135677778888999999999999888877520122 25667778888888889999
Q ss_pred HHHHHHHHHhhCCCCCCHhhHHHHHH-HHHhcCChhhhhcchHHHHHHHHHHHhCCCCCCccccCCHhhHHHHHHHHhcC
Q 038190 214 KVRVLFLDMKGRGIYPDAFVYNSLIR-VYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKD 292 (531)
Q Consensus 214 ~a~~~~~~m~~~g~~p~~~~~~~li~-~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 292 (531)
.+...+.........+ ......... .+...|+++.+.. .+......... .......+......+...
T Consensus 113 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~-------~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~ 180 (291)
T COG0457 113 EALELLEKALALDPDP-DLAEALLALGALYELGDYEEALE-------LYEKALELDPE----LNELAEALLALGALLEAL 180 (291)
T ss_pred HHHHHHHHHHcCCCCc-chHHHHHHHHHHHHcCCHHHHHH-------HHHHHHhcCCC----ccchHHHHHHhhhHHHHh
Confidence 9999999988754433 122222233 6778888888888 55555332200 012233444444556778
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 038190 293 VLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLY 372 (531)
Q Consensus 293 ~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~ 372 (531)
++.+.+...+..............+..+...+...++++.+...+......... ....+..+...+...+..+.+...+
T Consensus 181 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (291)
T COG0457 181 GRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPD-NAEALYNLALLLLELGRYEEALEAL 259 (291)
T ss_pred cCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcc-cHHHHhhHHHHHHHcCCHHHHHHHH
Confidence 899999999999887632214677788888888899999999999998876322 2344444555555667788888888
Q ss_pred HHHHhC
Q 038190 373 GEMISM 378 (531)
Q Consensus 373 ~~~~~~ 378 (531)
......
T Consensus 260 ~~~~~~ 265 (291)
T COG0457 260 EKALEL 265 (291)
T ss_pred HHHHHh
Confidence 777653
No 341
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=80.90 E-value=26 Score=27.78 Aligned_cols=51 Identities=14% Similarity=0.202 Sum_probs=33.8
Q ss_pred cCCHHHHHHHHHHHHHcCCC-CChhhHHHHHHHHHccCCHHHHHHHHHHHHhCC
Q 038190 65 EVELNDALCFFNYMIHMQPT-PFMPSFNSLLGALAGKKYYVNFICLSERLNTIG 117 (531)
Q Consensus 65 ~g~~~~A~~~~~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g 117 (531)
.++++++..+++.+.-..|+ +...++... .+...|+|.+|+.+|+++.+.+
T Consensus 23 ~~d~~D~e~lLdALrvLrP~~~e~d~~dg~--l~i~rg~w~eA~rvlr~l~~~~ 74 (153)
T TIGR02561 23 SADPYDAQAMLDALRVLRPNLKELDMFDGW--LLIARGNYDEAARILRELLSSA 74 (153)
T ss_pred cCCHHHHHHHHHHHHHhCCCccccchhHHH--HHHHcCCHHHHHHHHHhhhccC
Confidence 34788888888888764444 222333333 3557888888888888887664
No 342
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=80.53 E-value=26 Score=30.13 Aligned_cols=79 Identities=11% Similarity=0.055 Sum_probs=40.2
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCCCCCCcHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHH
Q 038190 162 CLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVY 241 (531)
Q Consensus 162 ~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~ 241 (531)
..+..|...-++.-|-...+++.+ ...+-.+++ -|.+..+.+--.++.+-....++.-+..-..+++ +
T Consensus 135 RtMEiyS~ttRFalaCN~s~KIiE---------PIQSRCAiL-Rysklsd~qiL~Rl~~v~k~Ekv~yt~dgLeaii--f 202 (333)
T KOG0991|consen 135 RTMEIYSNTTRFALACNQSEKIIE---------PIQSRCAIL-RYSKLSDQQILKRLLEVAKAEKVNYTDDGLEAII--F 202 (333)
T ss_pred HHHHHHcccchhhhhhcchhhhhh---------hHHhhhHhh-hhcccCHHHHHHHHHHHHHHhCCCCCcchHHHhh--h
Confidence 345556666666555555555553 122222222 2455555554455555555556665555555554 3
Q ss_pred HhcCChhhhhc
Q 038190 242 CCAVNWEDAKG 252 (531)
Q Consensus 242 ~~~~~~~~a~~ 252 (531)
...|+...|+.
T Consensus 203 ta~GDMRQalN 213 (333)
T KOG0991|consen 203 TAQGDMRQALN 213 (333)
T ss_pred hccchHHHHHH
Confidence 44566555555
No 343
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=80.52 E-value=4.5 Score=24.27 Aligned_cols=23 Identities=30% Similarity=0.533 Sum_probs=11.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHh
Q 038190 320 LIDGYCLMGRIDDARKLFVSIES 342 (531)
Q Consensus 320 ll~~~~~~g~~~~a~~~~~~~~~ 342 (531)
|..+|...|+.+.|.++++++..
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHH
Confidence 34445555555555555555443
No 344
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=79.43 E-value=38 Score=28.82 Aligned_cols=87 Identities=10% Similarity=-0.188 Sum_probs=57.8
Q ss_pred CcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCcchHHH
Q 038190 64 GEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFV 143 (531)
Q Consensus 64 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~ 143 (531)
..|-..-|+--|.+.....|. -...||-+.--+...|+++.|.+.|+...+.... ..+++..-.-++---|++..|.+
T Consensus 77 SlGL~~LAR~DftQaLai~P~-m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~-y~Ya~lNRgi~~YY~gR~~LAq~ 154 (297)
T COG4785 77 SLGLRALARNDFSQALAIRPD-MPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPT-YNYAHLNRGIALYYGGRYKLAQD 154 (297)
T ss_pred hhhHHHHHhhhhhhhhhcCCC-cHHHHHHHHHHHHhcccchHHHHHhhhHhccCCc-chHHHhccceeeeecCchHhhHH
Confidence 345666777777777764443 3468999999999999999999999999877522 22222222222334578888877
Q ss_pred HHHHHHHCC
Q 038190 144 ALGRILRKV 152 (531)
Q Consensus 144 ~~~~~~~~~ 152 (531)
-+-+.-+..
T Consensus 155 d~~~fYQ~D 163 (297)
T COG4785 155 DLLAFYQDD 163 (297)
T ss_pred HHHHHHhcC
Confidence 666665543
No 345
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=79.01 E-value=37 Score=28.39 Aligned_cols=58 Identities=10% Similarity=-0.035 Sum_probs=36.1
Q ss_pred HHHHHHHcCCChHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 038190 411 CLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK 470 (531)
Q Consensus 411 ~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 470 (531)
.|.+.....|.+++|+..++...+.+. .......-.+.+...|+-++|..-|++....
T Consensus 131 RLArvq~q~~k~D~AL~~L~t~~~~~w--~~~~~elrGDill~kg~k~~Ar~ay~kAl~~ 188 (207)
T COG2976 131 RLARVQLQQKKADAALKTLDTIKEESW--AAIVAELRGDILLAKGDKQEARAAYEKALES 188 (207)
T ss_pred HHHHHHHHhhhHHHHHHHHhccccccH--HHHHHHHhhhHHHHcCchHHHHHHHHHHHHc
Confidence 345666677788888888777665432 2222334456677777777777666655443
No 346
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=78.96 E-value=5 Score=21.69 Aligned_cols=24 Identities=8% Similarity=0.106 Sum_probs=15.4
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHH
Q 038190 446 VMICGLCIEGGIEKAYDLLPDMEE 469 (531)
Q Consensus 446 ~l~~~~~~~g~~~~A~~~~~~~~~ 469 (531)
.+..++.+.|++++|++.|+++.+
T Consensus 5 ~~a~~~~~~g~~~~A~~~~~~~~~ 28 (33)
T PF13174_consen 5 RLARCYYKLGDYDEAIEYFQRLIK 28 (33)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHH
Confidence 445566667777777776666554
No 347
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=77.12 E-value=22 Score=29.27 Aligned_cols=88 Identities=19% Similarity=0.191 Sum_probs=47.0
Q ss_pred HHhcCChhhhhcchHHHHHHHHHHHhCCCCCCccccCC-HhhHHHHHHHHhcCC----C-------HHHHHHHHHHHHhC
Q 038190 241 YCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPD-VLSYCSIINSLCKDV----L-------VDKAKELFLDMKSR 308 (531)
Q Consensus 241 ~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~~----~-------~~~a~~~~~~~~~~ 308 (531)
+++.....++...+++|+.-|++....+ |+ ..++..+..+|...+ + +++|...|+.....
T Consensus 38 LAqfk~g~es~~miedAisK~eeAL~I~--------P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~ 109 (186)
T PF06552_consen 38 LAQFKQGPESKKMIEDAISKFEEALKIN--------PNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDE 109 (186)
T ss_dssp HHHHS-HHHHHHHHHHHHHHHHHHHHH---------TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccCcchHHHHHHHHHHHHHHHHhcC--------CchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhc
Confidence 3344444556677777777787777744 54 355666666665433 2 33344444444433
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 038190 309 GIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEG 344 (531)
Q Consensus 309 ~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g 344 (531)
.|+..+|+.-+.... +|-++..++.+++
T Consensus 110 --~P~ne~Y~ksLe~~~------kap~lh~e~~~~~ 137 (186)
T PF06552_consen 110 --DPNNELYRKSLEMAA------KAPELHMEIHKQG 137 (186)
T ss_dssp ---TT-HHHHHHHHHHH------THHHHHHHHHHSS
T ss_pred --CCCcHHHHHHHHHHH------hhHHHHHHHHHHH
Confidence 567677766665542 3555555555544
No 348
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=77.02 E-value=90 Score=31.79 Aligned_cols=25 Identities=8% Similarity=-0.033 Sum_probs=15.3
Q ss_pred hhhHHHHHHHHHccCCHHHHHHHHHH
Q 038190 87 MPSFNSLLGALAGKKYYVNFICLSER 112 (531)
Q Consensus 87 ~~~~~~li~~~~~~~~~~~a~~~~~~ 112 (531)
..-|+ .+..+.-.|.++.|.++++.
T Consensus 149 p~FW~-~v~~lvlrG~~~~a~~lL~~ 173 (566)
T PF07575_consen 149 PDFWD-YVQRLVLRGLFDQARQLLRL 173 (566)
T ss_dssp HHHHH-HHHHHHHTT-HHHHHHHH-T
T ss_pred hhHHH-HHHHHHHcCCHHHHHHHHHh
Confidence 45566 46666667777777777743
No 349
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=76.78 E-value=44 Score=28.73 Aligned_cols=102 Identities=17% Similarity=0.130 Sum_probs=63.2
Q ss_pred HHcCCChHHHHHHHHHhhh----CCCCCc--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCC
Q 038190 416 LCKSWRLRSAWELFKKLPR----YGPEPN--VVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECLKAIELLHKMAKRYV 489 (531)
Q Consensus 416 ~~~~g~~~~A~~~~~~~~~----~g~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~i~~~~~a~~~~~~~~~~~~ 489 (531)
|.....+++|.+.|.-+.- .+..|. ...+-.+.+.|...|+.+....++ ..|+..|++.....-
T Consensus 87 ~~~~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl----------~~Al~~y~~a~~~e~ 156 (214)
T PF09986_consen 87 FSGERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFL----------RKALEFYEEAYENED 156 (214)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHH----------HHHHHHHHHHHHhCc
Confidence 3344456666665554432 222333 344556677777788866665555 457777887774332
Q ss_pred CC----C-HHHHHHHHHHHhccCChhHHHhhHHHhhhcchhhh
Q 038190 490 KP----D-EITVSILEELLNKDENCHECMNLLPSFLSRNQEES 527 (531)
Q Consensus 490 ~~----~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 527 (531)
.| + ....-.++....+.|++++|.+.+.++......+.
T Consensus 157 ~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~s~ 199 (214)
T PF09986_consen 157 FPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKKASK 199 (214)
T ss_pred CCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCCCCC
Confidence 21 2 23344577778899999999999999887755443
No 350
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=76.65 E-value=64 Score=29.91 Aligned_cols=26 Identities=12% Similarity=0.112 Sum_probs=17.5
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHhCC
Q 038190 284 SIINSLCKDVLVDKAKELFLDMKSRG 309 (531)
Q Consensus 284 ~ll~~~~~~~~~~~a~~~~~~~~~~~ 309 (531)
.+...+.+.|..+.|..+++.+.+.+
T Consensus 159 r~~~fl~~aG~~E~Ava~~Qa~lE~n 184 (321)
T PF08424_consen 159 RLCRFLRQAGYTERAVALWQALLEFN 184 (321)
T ss_pred HHHHHHHHCCchHHHHHHHHHHHHHH
Confidence 33444556777888888887777764
No 351
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=76.37 E-value=68 Score=30.04 Aligned_cols=31 Identities=13% Similarity=0.146 Sum_probs=22.7
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 038190 348 DTSSYNTLINSYSKIEKVEEALSLYGEMISM 378 (531)
Q Consensus 348 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 378 (531)
...+|..+...+.+.|.++.|...+..+...
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~ 175 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQL 175 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhcc
Confidence 4556777777788888888888777777653
No 352
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=76.36 E-value=11 Score=25.98 Aligned_cols=47 Identities=9% Similarity=-0.004 Sum_probs=35.5
Q ss_pred cCCChHHHHHHHHHhhhCCCCCc--HHHHHHHHHHHHHcCCHHHHHHHH
Q 038190 418 KSWRLRSAWELFKKLPRYGPEPN--VVTYTVMICGLCIEGGIEKAYDLL 464 (531)
Q Consensus 418 ~~g~~~~A~~~~~~~~~~g~~p~--~~~~~~l~~~~~~~g~~~~A~~~~ 464 (531)
...+.++|+..|...++.-..+. -.++..++.+|+..|++++++++-
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA 66 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFA 66 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77888999999999887533322 346678888999999998887654
No 353
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=75.75 E-value=1.1e+02 Score=32.19 Aligned_cols=234 Identities=11% Similarity=-0.033 Sum_probs=124.4
Q ss_pred HccCCcchHHHHHHHHHHCCCCCChh-------hHHHHH-HHHHhcCChHHHHHHHHHHHHcCCCCCCCCcHHhHHHHHH
Q 038190 133 CKMIGVSDAFVALGRILRKVFSPDVV-------TLGCLI-RGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIID 204 (531)
Q Consensus 133 ~~~g~~~~a~~~~~~~~~~~~~~~~~-------~~~~li-~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 204 (531)
....++++|..++.++...-..|+.. .++++- ......|+++.|.++.+.....-......+....+..+..
T Consensus 426 ~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~ 505 (894)
T COG2909 426 ASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGE 505 (894)
T ss_pred HHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhH
Confidence 45678999999988876643333322 333332 2234568999999988887764222222246677888888
Q ss_pred HHHhcCChhHHHHHHHHHhhCCCCCCHhhHHHHH-----HHHHhcCChhhhhcchHHHHHHHHHHHhCCCCCCccccCCH
Q 038190 205 GLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLI-----RVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDV 279 (531)
Q Consensus 205 ~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li-----~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 279 (531)
+..-.|++++|..+..+..+..-.-+...+..+. ..+...|....+ +....|...............+-.
T Consensus 506 a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a-----~~~~~~~~~~~q~l~q~~~~~f~~ 580 (894)
T COG2909 506 AAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARA-----EQEKAFNLIREQHLEQKPRHEFLV 580 (894)
T ss_pred HHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHH-----HHHHHHHHHHHHHhhhcccchhHH
Confidence 8999999999998887765532222443333222 234445522221 112222222221100000011223
Q ss_pred hhHHHHHHHHhcCCCHHHHHH----HHHHHHhCCCCCCHHHHH--HHHHHHHhcCCHHHHHHHHHHHHhcCCCC----CH
Q 038190 280 LSYCSIINSLCKDVLVDKAKE----LFLDMKSRGIIPDVVVYS--SLIDGYCLMGRIDDARKLFVSIESEGCIP----DT 349 (531)
Q Consensus 280 ~~~~~ll~~~~~~~~~~~a~~----~~~~~~~~~~~~~~~~~~--~ll~~~~~~g~~~~a~~~~~~~~~~g~~p----~~ 349 (531)
.++..++.++.+ .+.+.. -++........|-...+. .|+..+...|++++|...++++......+ +.
T Consensus 581 ~~r~~ll~~~~r---~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~ 657 (894)
T COG2909 581 RIRAQLLRAWLR---LDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDY 657 (894)
T ss_pred HHHHHHHHHHHH---HhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchH
Confidence 455555666655 333322 222222222222222222 66777888999999999999887653333 22
Q ss_pred HHHHHHH--HHHHhcCCHHHHHHHHHH
Q 038190 350 SSYNTLI--NSYSKIEKVEEALSLYGE 374 (531)
Q Consensus 350 ~~~~~li--~~~~~~~~~~~a~~~~~~ 374 (531)
.+-...+ ......|+...+.....+
T Consensus 658 ~a~~~~v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 658 LAAAYKVKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred HHHHHHhhHHHhcccCCHHHHHHHHHh
Confidence 2222222 233456788777776655
No 354
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=75.32 E-value=39 Score=26.77 Aligned_cols=86 Identities=14% Similarity=0.142 Sum_probs=55.5
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-CCCCCcHHhHHHHHHHHHhcCC-hhHHHHHHHHHhhCCCCCCHhhHHH
Q 038190 159 TLGCLIRGLCMQGKFTEASGLFTKFVAFDCR-PNVIPNVICYASIIDGLCKDGF-VNKVRVLFLDMKGRGIYPDAFVYNS 236 (531)
Q Consensus 159 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~m~~~g~~p~~~~~~~ 236 (531)
..|+++.-.+..+.+...+.+++.+...... -....+...|+.++.+..+..- ---+..+|+-|.+.+.+++..-|..
T Consensus 41 fiN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~ 120 (145)
T PF13762_consen 41 FINCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSC 120 (145)
T ss_pred HHHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 3455555556666666666666655332110 0001255678888888866655 4456778888888888889999999
Q ss_pred HHHHHHhc
Q 038190 237 LIRVYCCA 244 (531)
Q Consensus 237 li~~~~~~ 244 (531)
+|.++.+.
T Consensus 121 li~~~l~g 128 (145)
T PF13762_consen 121 LIKAALRG 128 (145)
T ss_pred HHHHHHcC
Confidence 99887654
No 355
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=75.04 E-value=3.8 Score=26.83 Aligned_cols=40 Identities=18% Similarity=0.037 Sum_probs=30.6
Q ss_pred CCHHHHHHHHHHHhccCChhHHHhhHHHhhhcchhhhhcc
Q 038190 491 PDEITVSILEELLNKDENCHECMNLLPSFLSRNQEESKLT 530 (531)
Q Consensus 491 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 530 (531)
-|....-.++.+|...|++++|.++++++...-...+.+.
T Consensus 21 HD~~NhLqvI~gllqlg~~~~a~eYi~~~~~~~~~~s~l~ 60 (62)
T PF14689_consen 21 HDFLNHLQVIYGLLQLGKYEEAKEYIKELSKDLQQESELL 60 (62)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555566799999999999999999999887766555543
No 356
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=74.81 E-value=22 Score=27.13 Aligned_cols=35 Identities=6% Similarity=0.059 Sum_probs=18.5
Q ss_pred CCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHhhh
Q 038190 400 TKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPR 434 (531)
Q Consensus 400 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 434 (531)
..+.|++.+...-+++|.+.+++..|..+|+-.+.
T Consensus 78 yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~ 112 (149)
T KOG4077|consen 78 YDLVPSPKVIEAALRACRRVNDFATAVRILEAIKD 112 (149)
T ss_pred cccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 33344555555555555555555555555555543
No 357
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=74.69 E-value=41 Score=28.24 Aligned_cols=92 Identities=11% Similarity=-0.043 Sum_probs=65.8
Q ss_pred HHHHccCCHHHHHHHHHHHHhCCCCCCH----hhHHHHHHHHHccCCcchHHHHHHHHHHCCCCCChhhHHHHHHHHHhc
Q 038190 95 GALAGKKYYVNFICLSERLNTIGLLPDF----VSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQ 170 (531)
Q Consensus 95 ~~~~~~~~~~~a~~~~~~m~~~g~~~~~----~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 170 (531)
.-+..+|++++|..-|.+.++.-..... ..|..-..++.+.+.++.|+.--.+.++.++. ...+...-..+|.+.
T Consensus 103 N~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pt-y~kAl~RRAeayek~ 181 (271)
T KOG4234|consen 103 NELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPT-YEKALERRAEAYEKM 181 (271)
T ss_pred HHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCch-hHHHHHHHHHHHHhh
Confidence 3466789999999999988876422222 23444456677888999999888888877643 333334445678888
Q ss_pred CChHHHHHHHHHHHHcC
Q 038190 171 GKFTEASGLFTKFVAFD 187 (531)
Q Consensus 171 g~~~~a~~~~~~~~~~~ 187 (531)
..+++|+.-|+.+....
T Consensus 182 ek~eealeDyKki~E~d 198 (271)
T KOG4234|consen 182 EKYEEALEDYKKILESD 198 (271)
T ss_pred hhHHHHHHHHHHHHHhC
Confidence 89999999999988763
No 358
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=74.50 E-value=17 Score=33.13 Aligned_cols=86 Identities=10% Similarity=-0.066 Sum_probs=37.9
Q ss_pred CcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCcchHHH
Q 038190 64 GEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFV 143 (531)
Q Consensus 64 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~ 143 (531)
.+|++++|+.+|.......|. |.+++..-..+|.+..++..|..=.+..+..+ ..-...|..-+.+--..|...+|.+
T Consensus 109 KQgKy~EAIDCYs~~ia~~P~-NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd-~~Y~KAYSRR~~AR~~Lg~~~EAKk 186 (536)
T KOG4648|consen 109 KQGKYEEAIDCYSTAIAVYPH-NPVYHINRALAYLKQKSFAQAEEDCEAAIALD-KLYVKAYSRRMQARESLGNNMEAKK 186 (536)
T ss_pred hccchhHHHHHhhhhhccCCC-CccchhhHHHHHHHHHHHHHHHHhHHHHHHhh-HHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 345566666666555443332 44455444555555555555444444333221 1111223333333333344444444
Q ss_pred HHHHHHHC
Q 038190 144 ALGRILRK 151 (531)
Q Consensus 144 ~~~~~~~~ 151 (531)
-++.++..
T Consensus 187 D~E~vL~L 194 (536)
T KOG4648|consen 187 DCETVLAL 194 (536)
T ss_pred hHHHHHhh
Confidence 44444443
No 359
>PRK09687 putative lyase; Provisional
Probab=74.38 E-value=67 Score=29.05 Aligned_cols=119 Identities=11% Similarity=0.077 Sum_probs=64.3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhCCCCCCcccHHHHH
Q 038190 313 DVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIE-KVEEALSLYGEMISMGVRPDNSCILEAA 391 (531)
Q Consensus 313 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~a~ 391 (531)
+..+-...+.++.+.|+ +.+...+-.+.+. ++...-...+.++.+.+ +...+...+..+...
T Consensus 141 ~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~d---~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~D------------- 203 (280)
T PRK09687 141 STNVRFAVAFALSVIND-EAAIPLLINLLKD---PNGDVRNWAAFALNSNKYDNPDIREAFVAMLQD------------- 203 (280)
T ss_pred CHHHHHHHHHHHhccCC-HHHHHHHHHHhcC---CCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhcC-------------
Confidence 55555566666666666 3455555555543 34444445555555442 233455555555432
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 038190 392 ELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDM 467 (531)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 467 (531)
+|..+-...+.++.+.|+ ..|...+-+..+.+ + .....+.++...|.. +|+..+.++
T Consensus 204 ------------~~~~VR~~A~~aLg~~~~-~~av~~Li~~L~~~---~--~~~~a~~ALg~ig~~-~a~p~L~~l 260 (280)
T PRK09687 204 ------------KNEEIRIEAIIGLALRKD-KRVLSVLIKELKKG---T--VGDLIIEAAGELGDK-TLLPVLDTL 260 (280)
T ss_pred ------------CChHHHHHHHHHHHccCC-hhHHHHHHHHHcCC---c--hHHHHHHHHHhcCCH-hHHHHHHHH
Confidence 255666777777777777 35555555555432 2 233556666666664 454444433
No 360
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=74.10 E-value=49 Score=27.34 Aligned_cols=48 Identities=15% Similarity=0.280 Sum_probs=28.1
Q ss_pred cchHHHHHHHHHHCCCCCCh-------hhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 038190 138 VSDAFVALGRILRKVFSPDV-------VTLGCLIRGLCMQGKFTEASGLFTKFVA 185 (531)
Q Consensus 138 ~~~a~~~~~~~~~~~~~~~~-------~~~~~li~~~~~~g~~~~a~~~~~~~~~ 185 (531)
++.|+.+|+.+.+.-..|.. ..--..+-.|.+.|.+++|.+++++...
T Consensus 85 LESAl~v~~~I~~E~~~~~~lhe~i~~lik~~aV~VCm~~g~Fk~A~eiLkr~~~ 139 (200)
T cd00280 85 LESALMVLESIEKEFSLPETLHEEIRKLIKEQAVAVCMENGEFKKAEEVLKRLFS 139 (200)
T ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhc
Confidence 45667777766654322211 0112334567777888888888877776
No 361
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=74.07 E-value=36 Score=26.02 Aligned_cols=53 Identities=11% Similarity=0.081 Sum_probs=43.4
Q ss_pred HHHHHHHHhhhCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhHHH
Q 038190 424 SAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECLK 476 (531)
Q Consensus 424 ~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~i~~~~~ 476 (531)
+..+-++.+....+.|++.....-+.+|.+.+++..|+++|+-+..+.|..++
T Consensus 67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K~g~~k~ 119 (149)
T KOG4077|consen 67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDKCGAQKQ 119 (149)
T ss_pred HHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHhcccHHH
Confidence 45566667777788999999999999999999999999999988777544444
No 362
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=73.82 E-value=35 Score=32.71 Aligned_cols=94 Identities=19% Similarity=0.191 Sum_probs=64.1
Q ss_pred HHHHHhcCCCHHHHHH-HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC
Q 038190 285 IINSLCKDVLVDKAKE-LFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIE 363 (531)
Q Consensus 285 ll~~~~~~~~~~~a~~-~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~~ 363 (531)
-|.-....|+...|-+ ++..+....-.|+.....+. .+...|+++.+...+...... +.....+..++++...+.|
T Consensus 295 si~k~~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~--i~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~ 371 (831)
T PRK15180 295 SITKQLADGDIIAASQQLFAALRNQQQDPVLIQLRSV--IFSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLA 371 (831)
T ss_pred HHHHHhhccCHHHHHHHHHHHHHhCCCCchhhHHHHH--HHHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchh
Confidence 3444456777777654 44444444344554444443 356779999999888766543 2235677888999999999
Q ss_pred CHHHHHHHHHHHHhCCCC
Q 038190 364 KVEEALSLYGEMISMGVR 381 (531)
Q Consensus 364 ~~~~a~~~~~~~~~~~~~ 381 (531)
+++.|...-.-|....+.
T Consensus 372 r~~~a~s~a~~~l~~eie 389 (831)
T PRK15180 372 RWREALSTAEMMLSNEIE 389 (831)
T ss_pred hHHHHHHHHHHHhccccC
Confidence 999999999888876654
No 363
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=73.71 E-value=41 Score=26.21 Aligned_cols=72 Identities=10% Similarity=0.071 Sum_probs=39.9
Q ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHhccCChhHHHhhH
Q 038190 438 EPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECLKAIELLHKMAKRY-VKPDEITVSILEELLNKDENCHECMNLL 516 (531)
Q Consensus 438 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~i~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 516 (531)
.+...+--.+.+++.+..+.++ .++++.+++...+.. ..-.......|.-++.|.|+++++.+++
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~d--------------v~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yv 94 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTED--------------VQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYV 94 (149)
T ss_pred cchHHHHHHHHHHHHcccchHH--------------HHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHH
Confidence 3445555556666666655543 245566666666411 1112234445666667777777777777
Q ss_pred HHhhhcc
Q 038190 517 PSFLSRN 523 (531)
Q Consensus 517 ~~~~~~~ 523 (531)
+.+....
T Consensus 95 d~ll~~e 101 (149)
T KOG3364|consen 95 DALLETE 101 (149)
T ss_pred HHHHhhC
Confidence 6655443
No 364
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=73.59 E-value=25 Score=34.68 Aligned_cols=136 Identities=17% Similarity=0.018 Sum_probs=91.6
Q ss_pred CHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCcchHHHHHH
Q 038190 67 ELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALG 146 (531)
Q Consensus 67 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 146 (531)
.-+-|-.+|-.|.+. ..|--...|...-.+.-.|+...|...+....-....-.......|.+...+.|-..+|..++.
T Consensus 588 e~e~~~~~~~~~~~~-~~p~w~~ln~aglywr~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~ 666 (886)
T KOG4507|consen 588 EEEIGSFLFHAINKP-NAPIWLILNEAGLYWRAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLL 666 (886)
T ss_pred HHHHHHHHHHHhcCC-CCCeEEEeecccceeeecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHH
Confidence 456677777766431 2222233344333445678999998888877644322233345666777778888889999998
Q ss_pred HHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCCCcHHhHHHHHHHHHhc
Q 038190 147 RILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKD 209 (531)
Q Consensus 147 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 209 (531)
+.+... ...+.++-.+.+++....+++.|++.|++.... .++ +...-+.|...-|+.
T Consensus 667 q~l~~~-~sepl~~~~~g~~~l~l~~i~~a~~~~~~a~~~--~~~---~~~~~~~l~~i~c~~ 723 (886)
T KOG4507|consen 667 QALAIN-SSEPLTFLSLGNAYLALKNISGALEAFRQALKL--TTK---CPECENSLKLIRCMQ 723 (886)
T ss_pred HHHhhc-ccCchHHHhcchhHHHHhhhHHHHHHHHHHHhc--CCC---ChhhHHHHHHHHHhh
Confidence 888775 335567777889999999999999999998876 442 666667666655544
No 365
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=73.39 E-value=10 Score=34.46 Aligned_cols=91 Identities=11% Similarity=-0.113 Sum_probs=62.8
Q ss_pred HHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCcchHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCh
Q 038190 94 LGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKF 173 (531)
Q Consensus 94 i~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 173 (531)
.+.|.++|.+++|++.|.+..... +-|+.++..-..+|.+...+..|..--..++..+ ..-+..|..-+.+-...|..
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia~~-P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd-~~Y~KAYSRR~~AR~~Lg~~ 181 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIAVY-PHNPVYHINRALAYLKQKSFAQAEEDCEAAIALD-KLYVKAYSRRMQARESLGNN 181 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhccC-CCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhh-HHHHHHHHHHHHHHHHHhhH
Confidence 346889999999999999887653 3388889888999999988888776665555432 11233444444444455667
Q ss_pred HHHHHHHHHHHHc
Q 038190 174 TEASGLFTKFVAF 186 (531)
Q Consensus 174 ~~a~~~~~~~~~~ 186 (531)
.+|.+-++...+.
T Consensus 182 ~EAKkD~E~vL~L 194 (536)
T KOG4648|consen 182 MEAKKDCETVLAL 194 (536)
T ss_pred HHHHHhHHHHHhh
Confidence 7777777766664
No 366
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=72.86 E-value=40 Score=30.68 Aligned_cols=103 Identities=17% Similarity=0.169 Sum_probs=55.7
Q ss_pred HHHHHHcCCChHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-------------hhHHHHH
Q 038190 412 LVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKI-------------RECLKAI 478 (531)
Q Consensus 412 l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~i-------------~~~~~a~ 478 (531)
++..+.+.++.......++.+.. ...-...+..+...|++..|++++.+..+.+ .+.++-.
T Consensus 104 Il~~~rkr~~l~~ll~~L~~i~~------v~~~~~~l~~ll~~~dy~~Al~li~~~~~~l~~l~~~~c~~~L~~~L~e~~ 177 (291)
T PF10475_consen 104 ILRLQRKRQNLKKLLEKLEQIKT------VQQTQSRLQELLEEGDYPGALDLIEECQQLLEELKGYSCVRHLSSQLQETL 177 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcccchHHHHHhHHHHHHH
Confidence 33444444444444444444432 2222344555556666666666666555541 2222223
Q ss_pred HHHHHHHHc-----CCCCCHHHHHHHHHHHhccCChhHHHhhHHHhh
Q 038190 479 ELLHKMAKR-----YVKPDEITVSILEELLNKDENCHECMNLLPSFL 520 (531)
Q Consensus 479 ~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 520 (531)
...+.+++. -..-|+..|..+..+|.-.|+.+.+.+-+....
T Consensus 178 ~~i~~~ld~~l~~~~~~Fd~~~Y~~v~~AY~lLgk~~~~~dkl~~~f 224 (291)
T PF10475_consen 178 ELIEEQLDSDLSKVCQDFDPDKYSKVQEAYQLLGKTQSAMDKLQMHF 224 (291)
T ss_pred HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 333322211 124678889999999999998877765554443
No 367
>PRK09687 putative lyase; Provisional
Probab=72.77 E-value=74 Score=28.80 Aligned_cols=233 Identities=10% Similarity=-0.003 Sum_probs=127.7
Q ss_pred CChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCc----chHHHHHHHHHHCCCCCChhhH
Q 038190 85 PFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGV----SDAFVALGRILRKVFSPDVVTL 160 (531)
Q Consensus 85 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~----~~a~~~~~~~~~~~~~~~~~~~ 160 (531)
++.......+.++...|. +.+...+..+.. .+|...-...+.++++.|+. ..+...+..+... .++..+.
T Consensus 35 ~d~~vR~~A~~aL~~~~~-~~~~~~l~~ll~---~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~VR 108 (280)
T PRK09687 35 HNSLKRISSIRVLQLRGG-QDVFRLAIELCS---SKNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSACVR 108 (280)
T ss_pred CCHHHHHHHHHHHHhcCc-chHHHHHHHHHh---CCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHHHH
Confidence 456666667777777665 334444444443 34666666777777777764 3566666666433 4566666
Q ss_pred HHHHHHHHhcCCh-----HHHHHHHHHHHHcCCCCCCCCcHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHhhHH
Q 038190 161 GCLIRGLCMQGKF-----TEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYN 235 (531)
Q Consensus 161 ~~li~~~~~~g~~-----~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~ 235 (531)
...+.+++..+.. ..+...+..... ++ +..+-...+.++.+.++ +.+...+-.+.+. ++...-.
T Consensus 109 ~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~---D~----~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~d---~~~~VR~ 177 (280)
T PRK09687 109 ASAINATGHRCKKNPLYSPKIVEQSQITAF---DK----STNVRFAVAFALSVIND-EAAIPLLINLLKD---PNGDVRN 177 (280)
T ss_pred HHHHHHHhcccccccccchHHHHHHHHHhh---CC----CHHHHHHHHHHHhccCC-HHHHHHHHHHhcC---CCHHHHH
Confidence 6666666665421 223333333332 22 44555566777777776 4455555555542 3444444
Q ss_pred HHHHHHHhcCC-hhhhhcchHHHHHHHHHHHhCCCCCCccccCCHhhHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCH
Q 038190 236 SLIRVYCCAVN-WEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDV 314 (531)
Q Consensus 236 ~li~~~~~~~~-~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 314 (531)
..+.++...+. ...+.. .+..+.. .++...-...+.++.+.++. .|...+-...+.+ +
T Consensus 178 ~A~~aLg~~~~~~~~~~~-------~L~~~L~---------D~~~~VR~~A~~aLg~~~~~-~av~~Li~~L~~~---~- 236 (280)
T PRK09687 178 WAAFALNSNKYDNPDIRE-------AFVAMLQ---------DKNEEIRIEAIIGLALRKDK-RVLSVLIKELKKG---T- 236 (280)
T ss_pred HHHHHHhcCCCCCHHHHH-------HHHHHhc---------CCChHHHHHHHHHHHccCCh-hHHHHHHHHHcCC---c-
Confidence 44555544321 112222 4444432 23555566677777777774 4555555555442 2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 038190 315 VVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSY 359 (531)
Q Consensus 315 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~ 359 (531)
.....+.++...|+. +|...+..+.+. .||..+-...+.+|
T Consensus 237 -~~~~a~~ALg~ig~~-~a~p~L~~l~~~--~~d~~v~~~a~~a~ 277 (280)
T PRK09687 237 -VGDLIIEAAGELGDK-TLLPVLDTLLYK--FDDNEIITKAIDKL 277 (280)
T ss_pred -hHHHHHHHHHhcCCH-hHHHHHHHHHhh--CCChhHHHHHHHHH
Confidence 234566777777775 577777776654 23555555555544
No 368
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=72.77 E-value=47 Score=29.53 Aligned_cols=88 Identities=8% Similarity=-0.007 Sum_probs=38.9
Q ss_pred HHHHHccCCcchHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCCCcHHhHHHHHHHHHh
Q 038190 129 MNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCK 208 (531)
Q Consensus 129 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 208 (531)
|.+++..++|.++..+.-+.-..--+....+...-|-.|.+.+++..+.++-...... |+.. +..-|.+++..|..
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~---p~Nq-~lp~y~~vaELyLl 165 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQD---PSNQ-SLPEYGTVAELYLL 165 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhC---cccC-CchhhHHHHHHHHH
Confidence 4555555555555544333322111112223333444555555555555555555542 1111 22234444443333
Q ss_pred -----cCChhHHHHHHH
Q 038190 209 -----DGFVNKVRVLFL 220 (531)
Q Consensus 209 -----~~~~~~a~~~~~ 220 (531)
.|.+++|+++..
T Consensus 166 ~VLlPLG~~~eAeelv~ 182 (309)
T PF07163_consen 166 HVLLPLGHFSEAEELVV 182 (309)
T ss_pred HHHhccccHHHHHHHHh
Confidence 366666655554
No 369
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=72.05 E-value=1.2e+02 Score=30.83 Aligned_cols=186 Identities=14% Similarity=0.098 Sum_probs=109.7
Q ss_pred hHHHHHHHHHHHHcCCCCCCCCcHHhHHHHHHH-----HHhcCChhHHHHHHHHHhh-------CCCCCCHhhHHHHHHH
Q 038190 173 FTEASGLFTKFVAFDCRPNVIPNVICYASIIDG-----LCKDGFVNKVRVLFLDMKG-------RGIYPDAFVYNSLIRV 240 (531)
Q Consensus 173 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-----~~~~~~~~~a~~~~~~m~~-------~g~~p~~~~~~~li~~ 240 (531)
...|...++.....| +...-..+... +....|.+.|+.+|....+ .| .......+..+
T Consensus 228 ~~~a~~~~~~~a~~g-------~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~ 297 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLG-------HSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRL 297 (552)
T ss_pred hhHHHHHHHHHHhhc-------chHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHH
Confidence 467888888887764 33333333322 4456799999999998876 44 33345566667
Q ss_pred HHhcCChhhhhcchHHHHHHHHHHHhCCCCCCccccCCHhhHHHHHHHHhc-CCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 038190 241 YCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCK-DVLVDKAKELFLDMKSRGIIPDVVVYSS 319 (531)
Q Consensus 241 ~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 319 (531)
|.+....... ....|+.++......+ .|+....-..+..... ..+...|.++|...-+.|..+ ...+..
T Consensus 298 Y~~g~~~~~~--d~~~A~~~~~~aA~~g-------~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~~-A~~~la 367 (552)
T KOG1550|consen 298 YLQGLGVEKI--DYEKALKLYTKAAELG-------NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHIL-AIYRLA 367 (552)
T ss_pred HhcCCCCccc--cHHHHHHHHHHHHhcC-------CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCChH-HHHHHH
Confidence 7665433322 4555666888887776 4555444333333333 246789999999999887542 222222
Q ss_pred HHHHHH--hcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 038190 320 LIDGYC--LMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGV 380 (531)
Q Consensus 320 ll~~~~--~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~ 380 (531)
++.... ...+...|...+.+.-+.| .|...--...+..+.. +.++.+...+..+.+.|.
T Consensus 368 ~~y~~G~gv~r~~~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g~ 428 (552)
T KOG1550|consen 368 LCYELGLGVERNLELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAELGY 428 (552)
T ss_pred HHHHhCCCcCCCHHHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhhh
Confidence 221111 2347889999999998887 2222222223333444 677777766666665543
No 370
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=70.80 E-value=71 Score=27.78 Aligned_cols=117 Identities=16% Similarity=0.012 Sum_probs=56.0
Q ss_pred ccCCHHHHHHHHHHHHhCCCCCCH-hhHHHHHHHHHccCCcchHHHHHHHHHHCCCCCChh-hHHHHHHHHHhcCChHHH
Q 038190 99 GKKYYVNFICLSERLNTIGLLPDF-VSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVV-TLGCLIRGLCMQGKFTEA 176 (531)
Q Consensus 99 ~~~~~~~a~~~~~~m~~~g~~~~~-~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~a 176 (531)
...++..|+..|.+.+.. .|+. .-|..-+.++.+..+++.+..--...++. .||.. ..-.+...+.....+++|
T Consensus 22 ~~k~y~~ai~~y~raI~~--nP~~~~Y~tnralchlk~~~~~~v~~dcrralql--~~N~vk~h~flg~~~l~s~~~~ea 97 (284)
T KOG4642|consen 22 IPKRYDDAIDCYSRAICI--NPTVASYYTNRALCHLKLKHWEPVEEDCRRALQL--DPNLVKAHYFLGQWLLQSKGYDEA 97 (284)
T ss_pred chhhhchHHHHHHHHHhc--CCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhc--ChHHHHHHHHHHHHHHhhccccHH
Confidence 334556666655555544 3443 33445555556666666665555544443 33433 222334445555666666
Q ss_pred HHHHHHHHHcCCCCCCCCcHHhHHHHHHHHHhcCChhHHHHHH
Q 038190 177 SGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLF 219 (531)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 219 (531)
+..+.+....+......+....+..|..+--..-...+..++.
T Consensus 98 I~~Lqra~sl~r~~~~~~~~di~~~L~~ak~~~w~v~e~~Ri~ 140 (284)
T KOG4642|consen 98 IKVLQRAYSLLREQPFTFGDDIPKALRDAKKKRWEVSEEKRIR 140 (284)
T ss_pred HHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCccchhHHHHHH
Confidence 6666665433222222233344555554433333334444433
No 371
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=70.39 E-value=2.4e+02 Score=33.72 Aligned_cols=143 Identities=9% Similarity=-0.030 Sum_probs=76.7
Q ss_pred CCHHHHHHHHHHHHHcCC-C-CChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCcchHHH
Q 038190 66 VELNDALCFFNYMIHMQP-T-PFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFV 143 (531)
Q Consensus 66 g~~~~A~~~~~~~~~~~~-~-~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~ 143 (531)
+.+..|...|+.-..... + .....|-.+...|+.-++++....+...-. .+...+ .-|......|++..|..
T Consensus 1397 ~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~-----a~~sl~-~qil~~e~~g~~~da~~ 1470 (2382)
T KOG0890|consen 1397 KAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRF-----ADPSLY-QQILEHEASGNWADAAA 1470 (2382)
T ss_pred HHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhh-----cCccHH-HHHHHHHhhccHHHHHH
Confidence 367777777776311000 0 112233444447777777777766665311 122222 23344556688888888
Q ss_pred HHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCCCcHHhHHHH-HHHHHhcCChhHHHHHHH
Q 038190 144 ALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASI-IDGLCKDGFVNKVRVLFL 220 (531)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~a~~~~~ 220 (531)
.|+.+.+.+.+ ...+++.++......|.++.++...+-.... .+ +....|+.+ +.+-.+.++++.......
T Consensus 1471 Cye~~~q~~p~-~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~--~s---e~~~~~~s~~~eaaW~l~qwD~~e~~l~ 1542 (2382)
T KOG0890|consen 1471 CYERLIQKDPD-KEKHHSGVLKSMLAIQHLSTEILHLDGLIIN--RS---EEVDELNSLGVEAAWRLSQWDLLESYLS 1542 (2382)
T ss_pred HHHHhhcCCCc-cccchhhHHHhhhcccchhHHHhhhcchhhc--cC---HHHHHHHHHHHHHHhhhcchhhhhhhhh
Confidence 88888776422 3556666666666667776666655544432 11 123333332 334456667766665544
No 372
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=70.25 E-value=15 Score=24.02 Aligned_cols=47 Identities=21% Similarity=0.283 Sum_probs=29.2
Q ss_pred hHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 038190 422 LRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK 470 (531)
Q Consensus 422 ~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 470 (531)
++...++++.+... +-|..-.-.+|.+|...|++++|.++++++.+.
T Consensus 6 ~~~~~~~~~~lR~~--RHD~~NhLqvI~gllqlg~~~~a~eYi~~~~~~ 52 (62)
T PF14689_consen 6 LEELEELIDSLRAQ--RHDFLNHLQVIYGLLQLGKYEEAKEYIKELSKD 52 (62)
T ss_dssp HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH--hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 34455555555432 224444456788888888888888888777654
No 373
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=68.83 E-value=30 Score=29.13 Aligned_cols=53 Identities=15% Similarity=0.066 Sum_probs=32.5
Q ss_pred HcCCChHHHHHHHHHhhh-CCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 038190 417 CKSWRLRSAWELFKKLPR-YGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEE 469 (531)
Q Consensus 417 ~~~g~~~~A~~~~~~~~~-~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 469 (531)
...++.+......+.+.+ ....|++.+|..++.++...|+.++|.+..+++..
T Consensus 119 ~~~~~~~~l~~~~~~a~~~l~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~ 172 (193)
T PF11846_consen 119 RLPPDPEMLEAYIEWAERLLRRRPDPNVYQRYALALALLGDPEEARQWLARARR 172 (193)
T ss_pred cCCCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344444444433333332 12468888888888888888888888776665543
No 374
>PRK11619 lytic murein transglycosylase; Provisional
Probab=68.76 E-value=1.5e+02 Score=30.72 Aligned_cols=30 Identities=20% Similarity=0.035 Sum_probs=22.3
Q ss_pred CHHHHHHHHHHHHcCCChHHHHHHHHHhhh
Q 038190 405 DLTVFNCLVDGLCKSWRLRSAWELFKKLPR 434 (531)
Q Consensus 405 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 434 (531)
...-.--+.+++...|+.++|..+|+.+..
T Consensus 345 ~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~ 374 (644)
T PRK11619 345 KDEWRYWQADLLLEQGRKAEAEEILRQLMQ 374 (644)
T ss_pred CHhhHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 334455677777778999999999988753
No 375
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=67.49 E-value=1.6e+02 Score=30.44 Aligned_cols=198 Identities=13% Similarity=0.098 Sum_probs=116.1
Q ss_pred HHHHHHHHHHHHH-cCCCCC--hhhHHHHHHHHH-ccCCHHHHHHHHHHHHhCCCCCCH-----hhHHHHHHHHHccCCc
Q 038190 68 LNDALCFFNYMIH-MQPTPF--MPSFNSLLGALA-GKKYYVNFICLSERLNTIGLLPDF-----VSLNILMNCFCKMIGV 138 (531)
Q Consensus 68 ~~~A~~~~~~~~~-~~~~~~--~~~~~~li~~~~-~~~~~~~a~~~~~~m~~~g~~~~~-----~~~~~li~~~~~~g~~ 138 (531)
+..|+..++.+.+ ..+.|. ..++-.+...+. ...+++.|...+++.....-.++- .....++..+.+.+..
T Consensus 37 I~~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~ 116 (608)
T PF10345_consen 37 IATAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPK 116 (608)
T ss_pred HHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHH
Confidence 4556777777773 333333 335556666665 668899999999987544322221 1233455666666655
Q ss_pred chHHHHHHHHHHCC----CCCChhhHHHH-HHHHHhcCChHHHHHHHHHHHHcCCCCCCCCcHHhHHHHHHHHH--hcCC
Q 038190 139 SDAFVALGRILRKV----FSPDVVTLGCL-IRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLC--KDGF 211 (531)
Q Consensus 139 ~~a~~~~~~~~~~~----~~~~~~~~~~l-i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~ 211 (531)
. |...+++.++.- ..+-...+..+ +..+...+++..|.+.++.+....... ..|-..++..++.+.. +.+.
T Consensus 117 ~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~-~d~~~~v~~~l~~~~l~l~~~~ 194 (608)
T PF10345_consen 117 A-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQR-GDPAVFVLASLSEALLHLRRGS 194 (608)
T ss_pred H-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhc-CCHHHHHHHHHHHHHHHhcCCC
Confidence 5 988888876642 11222333333 333333479999999999987653211 1134555555555544 3455
Q ss_pred hhHHHHHHHHHhhCC---------CCCCHhhHHHHHHHHH--hcCChhhhhcchHHHHHHHHHHHhC
Q 038190 212 VNKVRVLFLDMKGRG---------IYPDAFVYNSLIRVYC--CAVNWEDAKGNTSAALELHEEFVNG 267 (531)
Q Consensus 212 ~~~a~~~~~~m~~~g---------~~p~~~~~~~li~~~~--~~~~~~~a~~~~~~a~~~~~~~~~~ 267 (531)
.+.+.+.++.+.... ..|...+|..+++.++ ..|+++.+.....+..+.++.....
T Consensus 195 ~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~~~~~~~~~ 261 (608)
T PF10345_consen 195 PDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQFLDEIKKS 261 (608)
T ss_pred chhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcC
Confidence 677777777663321 2345666777766554 5566667777666666666666554
No 376
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=67.11 E-value=19 Score=26.13 Aligned_cols=87 Identities=16% Similarity=0.111 Sum_probs=57.9
Q ss_pred cCCHHHHHHHHHHHHHcCCCCChhhHHHHHH--HHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCcchHH
Q 038190 65 EVELNDALCFFNYMIHMQPTPFMPSFNSLLG--ALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAF 142 (531)
Q Consensus 65 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~--~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~ 142 (531)
....++|..+-+++...+ +..-...+|+ .+...|+|++|+.+.+.+ ..||...|..|-. .+.|-.+.+.
T Consensus 18 ~HcHqEA~tIAdwL~~~~---~~~E~v~lIRlsSLmNrG~Yq~Al~l~~~~----~~pdlepw~ALce--~rlGl~s~l~ 88 (115)
T TIGR02508 18 HHCHQEANTIADWLHLKG---ESEEAVQLIRLSSLMNRGDYQSALQLGNKL----CYPDLEPWLALCE--WRLGLGSALE 88 (115)
T ss_pred chHHHHHHHHHHHHhcCC---chHHHHHHHHHHHHHccchHHHHHHhcCCC----CCchHHHHHHHHH--HhhccHHHHH
Confidence 446788988888886543 2233344444 567889999999888766 3788877765543 4667777777
Q ss_pred HHHHHHHHCCCCCChhhHH
Q 038190 143 VALGRILRKVFSPDVVTLG 161 (531)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~ 161 (531)
..+..+-..| .|....|.
T Consensus 89 ~rl~rla~sg-~p~lq~Fa 106 (115)
T TIGR02508 89 SRLNRLAASG-DPRLQTFV 106 (115)
T ss_pred HHHHHHHhCC-CHHHHHHH
Confidence 7777777766 34444443
No 377
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=65.87 E-value=48 Score=24.76 Aligned_cols=51 Identities=16% Similarity=0.151 Sum_probs=36.8
Q ss_pred hhhhcccCCCCCcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHh
Q 038190 53 LLKYLSENSKSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNT 115 (531)
Q Consensus 53 l~~~l~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 115 (531)
+..+++....| ++++..+.+.+- .-|..|+..|...|..++|++++.++..
T Consensus 17 l~~llr~~N~C---~~~~~e~~L~~~---------~~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 17 LGPLLRLPNYC---DLEEVEEVLKEH---------GKYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred HHHHHccCCcC---CHHHHHHHHHHc---------CCHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 44445544444 677777666432 2588999999999999999999998876
No 378
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=65.00 E-value=25 Score=21.53 Aligned_cols=32 Identities=13% Similarity=0.122 Sum_probs=18.5
Q ss_pred ccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHH
Q 038190 99 GKKYYVNFICLSERLNTIGLLPDFVSLNILMN 130 (531)
Q Consensus 99 ~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~ 130 (531)
+.|-..++..++++|.+.|+..+...+..++.
T Consensus 14 ~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 14 RRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 45555566666666666666655555555543
No 379
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=64.94 E-value=85 Score=26.48 Aligned_cols=91 Identities=18% Similarity=0.174 Sum_probs=64.4
Q ss_pred HHHhcCCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc
Q 038190 287 NSLCKDVLVDKAKELFLDMKSRGIIPD----VVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKI 362 (531)
Q Consensus 287 ~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~ 362 (531)
+-+.++|++++|..-|...++...... ...|..-..++.+.+.++.|+.-..+.++.+.. .......-..+|.+.
T Consensus 103 N~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pt-y~kAl~RRAeayek~ 181 (271)
T KOG4234|consen 103 NELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPT-YEKALERRAEAYEKM 181 (271)
T ss_pred HHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCch-hHHHHHHHHHHHHhh
Confidence 345678999999999999887632111 233444455677889999999988888887543 222223334578888
Q ss_pred CCHHHHHHHHHHHHhC
Q 038190 363 EKVEEALSLYGEMISM 378 (531)
Q Consensus 363 ~~~~~a~~~~~~~~~~ 378 (531)
.++++|+.-|..+.+.
T Consensus 182 ek~eealeDyKki~E~ 197 (271)
T KOG4234|consen 182 EKYEEALEDYKKILES 197 (271)
T ss_pred hhHHHHHHHHHHHHHh
Confidence 9999999999998874
No 380
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=64.71 E-value=1.5e+02 Score=29.10 Aligned_cols=86 Identities=10% Similarity=-0.103 Sum_probs=56.4
Q ss_pred HHHHHHHcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHH-HHccCCcchHHHHHHHHHHCC
Q 038190 74 FFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNC-FCKMIGVSDAFVALGRILRKV 152 (531)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~-~~~~g~~~~a~~~~~~~~~~~ 152 (531)
+|...... ...|+..|..-+.-+-+.+.+.+.-.+|..|.... +.++..|.....- +-..-+++.|..+|...++.+
T Consensus 93 lyr~at~r-f~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~H-p~~~dLWI~aA~wefe~n~ni~saRalflrgLR~n 170 (568)
T KOG2396|consen 93 LYRRATNR-FNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKH-PNNPDLWIYAAKWEFEINLNIESARALFLRGLRFN 170 (568)
T ss_pred HHHHHHHh-cCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCchhHHhhhhhHHhhccchHHHHHHHHHHhhcC
Confidence 34444332 23388999999988888888999999999998764 4455555444332 233334888888888888765
Q ss_pred CCCChhhHHH
Q 038190 153 FSPDVVTLGC 162 (531)
Q Consensus 153 ~~~~~~~~~~ 162 (531)
+. ++..|-.
T Consensus 171 pd-sp~Lw~e 179 (568)
T KOG2396|consen 171 PD-SPKLWKE 179 (568)
T ss_pred CC-ChHHHHH
Confidence 33 3344433
No 381
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=64.02 E-value=1.1e+02 Score=27.52 Aligned_cols=60 Identities=13% Similarity=0.150 Sum_probs=49.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 038190 317 YSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMIS 377 (531)
Q Consensus 317 ~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 377 (531)
++.....|..+|.+.+|.++.++..+.+. .+...|-.++..+...|+--.+..-++++.+
T Consensus 282 lgkva~~yle~g~~neAi~l~qr~ltldp-L~e~~nk~lm~~la~~gD~is~~khyerya~ 341 (361)
T COG3947 282 LGKVARAYLEAGKPNEAIQLHQRALTLDP-LSEQDNKGLMASLATLGDEISAIKHYERYAE 341 (361)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhcCh-hhhHHHHHHHHHHHHhccchhhhhHHHHHHH
Confidence 35556678899999999999999988753 3778888999999999998888888777743
No 382
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=63.74 E-value=1e+02 Score=26.97 Aligned_cols=105 Identities=8% Similarity=-0.112 Sum_probs=68.9
Q ss_pred HHHHHhcCChhhhhcchHHHHHHHHHHHhCCCCCC-ccc---cCCHhhHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCC
Q 038190 238 IRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELG-VIC---HPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPD 313 (531)
Q Consensus 238 i~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~-~~~---~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 313 (531)
.+-+.+.|++.+|...|.+|+..++.+.-...... .=+ .-....+.....++...|++-++++.-.++.... +-|
T Consensus 185 GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~~~-~~n 263 (329)
T KOG0545|consen 185 GNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILRHH-PGN 263 (329)
T ss_pred hhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHhcC-Cch
Confidence 34567889999999999999888888765431000 000 0012234445556667788888888877777662 346
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 038190 314 VVVYSSLIDGYCLMGRIDDARKLFVSIESE 343 (531)
Q Consensus 314 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 343 (531)
+..|-.-..+.+..-+.++|..=|...++.
T Consensus 264 vKA~frRakAhaa~Wn~~eA~~D~~~vL~l 293 (329)
T KOG0545|consen 264 VKAYFRRAKAHAAVWNEAEAKADLQKVLEL 293 (329)
T ss_pred HHHHHHHHHHHHhhcCHHHHHHHHHHHHhc
Confidence 667766667777777788888888877775
No 383
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=63.14 E-value=61 Score=24.20 Aligned_cols=28 Identities=36% Similarity=0.272 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHcCCChHHHHHHHHHhhh
Q 038190 407 TVFNCLVDGLCKSWRLRSAWELFKKLPR 434 (531)
Q Consensus 407 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 434 (531)
.-|..|+..|...|..++|++++.++.+
T Consensus 40 ~~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 40 GKYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CCHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 3688999999999999999999998876
No 384
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=63.02 E-value=75 Score=25.21 Aligned_cols=82 Identities=15% Similarity=0.210 Sum_probs=47.4
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHhCC-----CCCCHhhHHHHHHHHHccCC-cchHHHHHHHHHHCCCCCChhhHHH
Q 038190 89 SFNSLLGALAGKKYYVNFICLSERLNTIG-----LLPDFVSLNILMNCFCKMIG-VSDAFVALGRILRKVFSPDVVTLGC 162 (531)
Q Consensus 89 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g-----~~~~~~~~~~li~~~~~~g~-~~~a~~~~~~~~~~~~~~~~~~~~~ 162 (531)
..|.++.-.+..+++...+.+++.+.-.. -..+...|+.++.+..+... --.+..+|+.+.+.+.+.+..-|..
T Consensus 41 fiN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~ 120 (145)
T PF13762_consen 41 FINCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSC 120 (145)
T ss_pred HHHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 34666666666777777777776663211 02344456666666655444 3344555666666556666666666
Q ss_pred HHHHHHhc
Q 038190 163 LIRGLCMQ 170 (531)
Q Consensus 163 li~~~~~~ 170 (531)
+|.++.+.
T Consensus 121 li~~~l~g 128 (145)
T PF13762_consen 121 LIKAALRG 128 (145)
T ss_pred HHHHHHcC
Confidence 66655544
No 385
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=62.98 E-value=95 Score=31.64 Aligned_cols=146 Identities=10% Similarity=0.064 Sum_probs=29.5
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 038190 300 ELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMG 379 (531)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 379 (531)
...+.+...-.-.+......++..|.+.|-.+.|.++.+.+-..-. ...-|..-+..+.+.|+...+..+.+.+.+..
T Consensus 391 ~~i~~lL~~~p~~t~~~~~k~l~iC~~~~L~~~a~~I~~~~~~~~~--~~~~~g~AL~~~~ra~d~~~v~~i~~~ll~~~ 468 (566)
T PF07575_consen 391 ERIEELLPRVPLDTNDDAEKLLEICAELGLEDVAREICKILGQRLL--KEGRYGEALSWFIRAGDYSLVTRIADRLLEEY 468 (566)
T ss_dssp HHHHHHGGG----SHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHH--HHHHHHHHHHHHH-------------------
T ss_pred HHHHHHHhhCCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH--HCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 3344444332233455556666667777777777776666544311 23345555566666676666666555555432
Q ss_pred CCCCcccHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHH--HcCCChHHHHHHHHHhhhCCCCCcHHHHHHHHHH
Q 038190 380 VRPDNSCILEAAELFRTLHNT-KFELDLTVFNCLVDGL--CKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICG 450 (531)
Q Consensus 380 ~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~--~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~ 450 (531)
...+.. ....+.+.+... .+.+....|..+-+.| .+.|++.+|.+.+-.+...+..|...-...|.++
T Consensus 469 ~~~~~~---~~~~ll~~i~~~~~~~~~L~fla~yreF~~~~~~~~~~~Aa~~Lv~Ll~~~~~Pk~f~~~LL~d~ 539 (566)
T PF07575_consen 469 CNNGEP---LDDDLLDNIGSPMLLSQRLSFLAKYREFYELYDEGDFREAASLLVSLLKSPIAPKSFWPLLLCDA 539 (566)
T ss_dssp --------------------------------------------------------------------------
T ss_pred hcCCCc---ccHHHHHHhcchhhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHCCCCCcHHHHHHHHHHH
Confidence 222210 111111111111 1111222233332222 3447888888777777776666665554445444
No 386
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=62.80 E-value=37 Score=25.72 Aligned_cols=69 Identities=14% Similarity=0.012 Sum_probs=43.9
Q ss_pred CHhhHHHHHHHHHhcCChhhhhcchHHHHHHHHHHHhCCCCCCccccCCHhhHH----HHHHHHhcCCCHHHHHHHHHHH
Q 038190 230 DAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYC----SIINSLCKDVLVDKAKELFLDM 305 (531)
Q Consensus 230 ~~~~~~~li~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~----~ll~~~~~~~~~~~a~~~~~~~ 305 (531)
|...+..|-.++...|++++++...+.|+.+|+.--+... ..-..|- .-..++...|+.++|...|+..
T Consensus 54 DA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~q-------deGklWIaaVfsra~Al~~~Gr~~eA~~~fr~a 126 (144)
T PF12968_consen 54 DAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQ-------DEGKLWIAAVFSRAVALEGLGRKEEALKEFRMA 126 (144)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTS-------THHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhcccccc-------ccchhHHHHHHHHHHHHHhcCChHHHHHHHHHH
Confidence 3445666778888999999999999999988887654431 1122222 2234566788888888877653
No 387
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=62.54 E-value=62 Score=25.76 Aligned_cols=45 Identities=16% Similarity=0.012 Sum_probs=20.4
Q ss_pred HHHHhCCCCCCHhhHHHHHHHHHccCCcchHHHHHHHHHHCCCCCC
Q 038190 111 ERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPD 156 (531)
Q Consensus 111 ~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~ 156 (531)
+.+.+.|++++. --..++..+.+.++.-.|.++|+.+.+.++..+
T Consensus 10 ~~lk~~glr~T~-qR~~vl~~L~~~~~~~sAeei~~~l~~~~p~is 54 (145)
T COG0735 10 ERLKEAGLRLTP-QRLAVLELLLEADGHLSAEELYEELREEGPGIS 54 (145)
T ss_pred HHHHHcCCCcCH-HHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCC
Confidence 333444444333 223344444444444555555555555544443
No 388
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=62.35 E-value=15 Score=18.91 Aligned_cols=25 Identities=8% Similarity=0.021 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHH
Q 038190 443 TYTVMICGLCIEGGIEKAYDLLPDM 467 (531)
Q Consensus 443 ~~~~l~~~~~~~g~~~~A~~~~~~~ 467 (531)
.|..+...+...|++++|...|+..
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~ 27 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKA 27 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 4555666667777777776666543
No 389
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=61.79 E-value=1e+02 Score=26.42 Aligned_cols=77 Identities=23% Similarity=0.158 Sum_probs=49.5
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCCCcHHhHHHHHHHHHhcCChhHHHHHHHHHhhC--CCCCCHhhHHH
Q 038190 159 TLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGR--GIYPDAFVYNS 236 (531)
Q Consensus 159 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~--g~~p~~~~~~~ 236 (531)
+.+..++.+.+.+.+.+|+...++-++. +|. |...-..+++.+|-.|+|++|..-++..-.. ...+...+|..
T Consensus 3 Tl~~t~seLL~~~sL~dai~~a~~qVka--kPt---da~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~ 77 (273)
T COG4455 3 TLRDTISELLDDNSLQDAIGLARDQVKA--KPT---DAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRH 77 (273)
T ss_pred chHHHHHHHHHhccHHHHHHHHHHHHhc--CCc---cccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHH
Confidence 3445566777777888888777666654 442 6666777788888888888887776665443 12234455665
Q ss_pred HHHH
Q 038190 237 LIRV 240 (531)
Q Consensus 237 li~~ 240 (531)
+|.+
T Consensus 78 lir~ 81 (273)
T COG4455 78 LIRC 81 (273)
T ss_pred HHHH
Confidence 5544
No 390
>PRK10941 hypothetical protein; Provisional
Probab=61.44 E-value=1.1e+02 Score=27.41 Aligned_cols=80 Identities=10% Similarity=-0.090 Sum_probs=57.4
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCCCcHHhHHHHHHHHHhcCChhHHHHHHHHHhhC-CCCCCHhhHHHH
Q 038190 159 TLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGR-GIYPDAFVYNSL 237 (531)
Q Consensus 159 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~-g~~p~~~~~~~l 237 (531)
..+.+-.+|.+.++++.|+.+.+.+... .|+ +..-+..-.-.|.+.|.+..|..=++...+. .-.|+.......
T Consensus 183 ml~nLK~~~~~~~~~~~AL~~~e~ll~l--~P~---dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~q 257 (269)
T PRK10941 183 LLDTLKAALMEEKQMELALRASEALLQF--DPE---DPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQ 257 (269)
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHh--CCC---CHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHH
Confidence 3455677788889999999999888876 443 5666776777788889888888877777543 445666666666
Q ss_pred HHHHHh
Q 038190 238 IRVYCC 243 (531)
Q Consensus 238 i~~~~~ 243 (531)
+.....
T Consensus 258 l~~l~~ 263 (269)
T PRK10941 258 IHSIEQ 263 (269)
T ss_pred HHHHhh
Confidence 655543
No 391
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=61.43 E-value=20 Score=18.94 Aligned_cols=29 Identities=7% Similarity=0.077 Sum_probs=17.3
Q ss_pred CCHHHHHHHHHHHHHcCCCCChhhHHHHHH
Q 038190 66 VELNDALCFFNYMIHMQPTPFMPSFNSLLG 95 (531)
Q Consensus 66 g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 95 (531)
|+.+.|..+|+++....+. +...|...+.
T Consensus 1 ~~~~~~r~i~e~~l~~~~~-~~~~W~~y~~ 29 (33)
T smart00386 1 GDIERARKIYERALEKFPK-SVELWLKYAE 29 (33)
T ss_pred CcHHHHHHHHHHHHHHCCC-ChHHHHHHHH
Confidence 3566777777777665442 5555655543
No 392
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=60.57 E-value=11 Score=29.16 Aligned_cols=30 Identities=23% Similarity=0.317 Sum_probs=23.0
Q ss_pred CCHHHHHHHHHHHHHcCCCCChhhHHHHHHHH
Q 038190 66 VELNDALCFFNYMIHMQPTPFMPSFNSLLGAL 97 (531)
Q Consensus 66 g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~ 97 (531)
|.-.+|..+|..|++.|-.|| .|+.|+...
T Consensus 109 gsk~DaY~VF~kML~~G~pPd--dW~~Ll~~a 138 (140)
T PF11663_consen 109 GSKTDAYAVFRKMLERGNPPD--DWDALLKEA 138 (140)
T ss_pred ccCCcHHHHHHHHHhCCCCCc--cHHHHHHHh
Confidence 466788888888888887766 688887654
No 393
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=60.06 E-value=1.6e+02 Score=28.09 Aligned_cols=57 Identities=14% Similarity=0.132 Sum_probs=40.7
Q ss_pred HHHHHcCCChHHHHHHHHHhhhCCCCCcHH--HHHHHHHHHH--HcCCHHHHHHHHHHHHHH
Q 038190 413 VDGLCKSWRLRSAWELFKKLPRYGPEPNVV--TYTVMICGLC--IEGGIEKAYDLLPDMEEK 470 (531)
Q Consensus 413 ~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~--~~~~l~~~~~--~~g~~~~A~~~~~~~~~~ 470 (531)
+..+.+.+++..|.++|+.+.+. ++++.. .+..+..+|. ..-++++|.+.++.....
T Consensus 138 a~~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 138 AKELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 34456889999999999999876 555544 4455555554 578888999988876654
No 394
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=59.96 E-value=37 Score=20.80 Aligned_cols=36 Identities=14% Similarity=0.240 Sum_probs=25.7
Q ss_pred HHHHhcCChhHHHHHHHHHhhCCCCCCHhhHHHHHH
Q 038190 204 DGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIR 239 (531)
Q Consensus 204 ~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~ 239 (531)
....+.|-..++..++++|.+.|+..+...+..++.
T Consensus 10 ~~Ak~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 10 LLAKRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHHHHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 334566777788888888888887777777766654
No 395
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=59.92 E-value=61 Score=23.36 Aligned_cols=54 Identities=11% Similarity=-0.020 Sum_probs=33.2
Q ss_pred HHcCCChHHHHHHHHHhhh----CCCCCc----HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 038190 416 LCKSWRLRSAWELFKKLPR----YGPEPN----VVTYTVMICGLCIEGGIEKAYDLLPDMEE 469 (531)
Q Consensus 416 ~~~~g~~~~A~~~~~~~~~----~g~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 469 (531)
..+.|++.+|.+.+.++-+ .+.... ....-.+.......|++++|++.+++..+
T Consensus 8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 4578899999766666554 222221 12222345556678999999888876544
No 396
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=59.39 E-value=1.3e+02 Score=27.01 Aligned_cols=45 Identities=11% Similarity=0.162 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHh-ccCChhHHHhhHHH
Q 038190 474 CLKAIELLHKMAKRYVKPDEI-TVSILEELLN-KDENCHECMNLLPS 518 (531)
Q Consensus 474 ~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~-~~g~~~~a~~~~~~ 518 (531)
.++.++..+.|++.|-.-+.. -|..+-..++ ...++.+|-.++-.
T Consensus 171 V~e~lE~~~~~iEkGgDWeRrNRyK~Y~Gi~~m~~RnFkeAa~Ll~d 217 (412)
T COG5187 171 VEESLEVADDIIEKGGDWERRNRYKVYKGIFKMMRRNFKEAAILLSD 217 (412)
T ss_pred HHHHHHHHHHHHHhCCCHHhhhhHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 355677778888877654442 2222222222 22357776666544
No 397
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=59.38 E-value=66 Score=35.32 Aligned_cols=163 Identities=15% Similarity=0.074 Sum_probs=102.5
Q ss_pred HHHHhcCChhHHHH------HHHHHhhCCCCCCHhhHHHHHHHHHhcCChhhhhcchHHHHHHHHHHHhCCCCCCccccC
Q 038190 204 DGLCKDGFVNKVRV------LFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHP 277 (531)
Q Consensus 204 ~~~~~~~~~~~a~~------~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~ 277 (531)
......|.+.++.+ ++...-..-.++....|..+...+.+.++.++|......|.-+.+.+...+ ..-
T Consensus 940 q~~~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~d------s~~ 1013 (1236)
T KOG1839|consen 940 QEALLEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKD------SPN 1013 (1236)
T ss_pred hhhhcccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCC------CHH
Confidence 34445566666666 554322222234566778888888899999998886666666666666555 444
Q ss_pred CHhhHHHHHHHHhcCCCHHHHHHHHHHHHhC-----C--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-----CC
Q 038190 278 DVLSYCSIINSLCKDVLVDKAKELFLDMKSR-----G--IIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESE-----GC 345 (531)
Q Consensus 278 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~--~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-----g~ 345 (531)
+...|..+...+...+....|...+...... | .+|...+++.+-..+...++++.|.+.++.+... |.
T Consensus 1014 t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~g~ 1093 (1236)
T KOG1839|consen 1014 TKLAYGNLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKKVLGP 1093 (1236)
T ss_pred HHHHhhHHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcCc
Confidence 5566766666666666777777777665543 2 3444455555555555668899999999887653 21
Q ss_pred --CCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 038190 346 --IPDTSSYNTLINSYSKIEKVEEALSLY 372 (531)
Q Consensus 346 --~p~~~~~~~li~~~~~~~~~~~a~~~~ 372 (531)
-.+..++..+.+.+...+++..|....
T Consensus 1094 ~~l~~~~~~~~~a~l~~s~~dfr~al~~e 1122 (1236)
T KOG1839|consen 1094 KELETALSYHALARLFESMKDFRNALEHE 1122 (1236)
T ss_pred cchhhhhHHHHHHHHHhhhHHHHHHHHHH
Confidence 124556667766666666666655443
No 398
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=58.86 E-value=2.6e+02 Score=30.03 Aligned_cols=208 Identities=15% Similarity=0.092 Sum_probs=113.6
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCC---HhhHHHHHHHHHhcCChhhhhcchHHHHHHHHHHHhCCCCCCcc
Q 038190 198 CYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPD---AFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVI 274 (531)
Q Consensus 198 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~---~~~~~~li~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~ 274 (531)
-|..|+..|...|+.++|++++.+.....-.-| ..-+..++.-+.+.+.. ..+..++.-..........|..
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e~ii~YL~~l~~~-----~~~Li~~y~~wvl~~~p~~gi~ 580 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDGLEKIIEYLKKLGAE-----NLDLILEYADWVLNKNPEAGIQ 580 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhccc-----chhHHHHHhhhhhccCchhhee
Confidence 488999999999999999999999987420001 11222344444444332 1112222333333333222211
Q ss_pred ccCC--H---hhH-HHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC--------CHHHHHHH----
Q 038190 275 CHPD--V---LSY-CSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMG--------RIDDARKL---- 336 (531)
Q Consensus 275 ~~~~--~---~~~-~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g--------~~~~a~~~---- 336 (531)
+-.+ . .+. ...+-.|......+.+..+++.+....-.++....+.++..|+..= +-+++.+.
T Consensus 581 Ift~~~~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e~v~~~~~~~~kg~e~~E~~~re 660 (877)
T KOG2063|consen 581 IFTSEDKQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLEKVLEQASTDGKGEEAPETTVRE 660 (877)
T ss_pred eeeccChhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHHHHhhccCchhccccchhhhHHH
Confidence 1111 0 000 1123345566777888899999887766667777888888777531 12222222
Q ss_pred -HHHHHh--cCCCCC--------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHhCCCCCC
Q 038190 337 -FVSIES--EGCIPD--------TSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELD 405 (531)
Q Consensus 337 -~~~~~~--~g~~p~--------~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 405 (531)
+..+.+ ....|. ...|....-.+.+.|+.++|+.++-.... +++.|........+ ..+++
T Consensus 661 kl~~~l~~s~~Y~p~~~L~~~~~~~l~ee~aill~rl~khe~aL~Iyv~~L~--------d~~~A~~Yc~~~y~-~~~~~ 731 (877)
T KOG2063|consen 661 KLLDFLESSDLYDPQLLLERLNGDELYEERAILLGRLGKHEEALHIYVHELD--------DIDAAESYCLPQYE-SDKTN 731 (877)
T ss_pred HHHHHhhhhcccCcchhhhhccchhHHHHHHHHHhhhhhHHHHHHHHHHHhc--------chhHHHHHHHHhcc-CCCcc
Confidence 112221 112221 22233333334488999999998877654 34455555555555 44557
Q ss_pred HHHHHHHHHHHHcC
Q 038190 406 LTVFNCLVDGLCKS 419 (531)
Q Consensus 406 ~~~~~~l~~~~~~~ 419 (531)
...|-.++..|...
T Consensus 732 ~~~y~~lL~~~l~~ 745 (877)
T KOG2063|consen 732 KEIYLTLLRIYLNP 745 (877)
T ss_pred cHHHHHHHHHHhcc
Confidence 77888888887766
No 399
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=58.02 E-value=1.2e+02 Score=26.05 Aligned_cols=103 Identities=15% Similarity=-0.055 Sum_probs=57.7
Q ss_pred HhcCChhHHHHHHHHHhh----CCCCCCHh--hHHHHHHHHHhcCChhhhhcchHHHHHHHHHHHhCCCCCCccccCCHh
Q 038190 207 CKDGFVNKVRVLFLDMKG----RGIYPDAF--VYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVL 280 (531)
Q Consensus 207 ~~~~~~~~a~~~~~~m~~----~g~~p~~~--~~~~li~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 280 (531)
.....+++|.+.|....- .+.++... .+-.+.-.|...++.+.....+..|++.|............ ...+..
T Consensus 88 ~~~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~-~~~~~~ 166 (214)
T PF09986_consen 88 SGERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIE-GMDEAT 166 (214)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCC-CchHHH
Confidence 334455555555544321 12233322 22333344556667666777788888888888766521110 011123
Q ss_pred hHHHHHHHHhcCCCHHHHHHHHHHHHhCCC
Q 038190 281 SYCSIINSLCKDVLVDKAKELFLDMKSRGI 310 (531)
Q Consensus 281 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 310 (531)
..-.+.....+.|+.++|.+.|..+...+-
T Consensus 167 l~YLigeL~rrlg~~~eA~~~fs~vi~~~~ 196 (214)
T PF09986_consen 167 LLYLIGELNRRLGNYDEAKRWFSRVIGSKK 196 (214)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHcCCC
Confidence 333455667788899999999888887643
No 400
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=57.80 E-value=76 Score=31.55 Aligned_cols=152 Identities=17% Similarity=0.031 Sum_probs=99.3
Q ss_pred CCChhhHHHHHHHHHccC--CHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCcchHHHHHHHHHHCCCCCChhhHH
Q 038190 84 TPFMPSFNSLLGALAGKK--YYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLG 161 (531)
Q Consensus 84 ~~~~~~~~~li~~~~~~~--~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 161 (531)
-|+..+...++.-....- ..+-+-.++--|..- +.|--.+.|...-.+...|+...|...+..+....+....+...
T Consensus 568 ~~~~~~~k~~~~r~~~~~i~e~e~~~~~~~~~~~~-~~p~w~~ln~aglywr~~gn~~~a~~cl~~a~~~~p~~~~v~~v 646 (886)
T KOG4507|consen 568 MPDDHARKILLSRINNYTIPEEEIGSFLFHAINKP-NAPIWLILNEAGLYWRAVGNSTFAIACLQRALNLAPLQQDVPLV 646 (886)
T ss_pred CchHHHHHHHHHHHhcccCcHHHHHHHHHHHhcCC-CCCeEEEeecccceeeecCCcHHHHHHHHHHhccChhhhcccHH
Confidence 355656555554443222 233444555555422 23333334433334456799999999998887765555556666
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCCCCCCcHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHH
Q 038190 162 CLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVY 241 (531)
Q Consensus 162 ~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~ 241 (531)
.|...+.+.|..-.|-.++.+....... ...++..+.+++....+++.|++.|++..+.... +...-+.+...-
T Consensus 647 ~la~~~~~~~~~~da~~~l~q~l~~~~s-----epl~~~~~g~~~l~l~~i~~a~~~~~~a~~~~~~-~~~~~~~l~~i~ 720 (886)
T KOG4507|consen 647 NLANLLIHYGLHLDATKLLLQALAINSS-----EPLTFLSLGNAYLALKNISGALEAFRQALKLTTK-CPECENSLKLIR 720 (886)
T ss_pred HHHHHHHHhhhhccHHHHHHHHHhhccc-----CchHHHhcchhHHHHhhhHHHHHHHHHHHhcCCC-ChhhHHHHHHHH
Confidence 7888888888888899888887765321 4567888999999999999999999998876433 455555555443
Q ss_pred H
Q 038190 242 C 242 (531)
Q Consensus 242 ~ 242 (531)
|
T Consensus 721 c 721 (886)
T KOG4507|consen 721 C 721 (886)
T ss_pred H
Confidence 3
No 401
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=57.38 E-value=39 Score=21.27 Aligned_cols=30 Identities=23% Similarity=0.148 Sum_probs=19.5
Q ss_pred HHHHHHHcCCChHHHHHHHHHhhhCCCCCcHH
Q 038190 411 CLVDGLCKSWRLRSAWELFKKLPRYGPEPNVV 442 (531)
Q Consensus 411 ~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~ 442 (531)
.+.-++.+.|++++|.+..+.+++. .|+-.
T Consensus 6 ~lAig~ykl~~Y~~A~~~~~~lL~~--eP~N~ 35 (53)
T PF14853_consen 6 YLAIGHYKLGEYEKARRYCDALLEI--EPDNR 35 (53)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHH--TTS-H
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhh--CCCcH
Confidence 3455677788888888888887773 56543
No 402
>KOG2168 consensus Cullins [Cell cycle control, cell division, chromosome partitioning]
Probab=57.35 E-value=2.6e+02 Score=29.55 Aligned_cols=21 Identities=10% Similarity=0.094 Sum_probs=14.7
Q ss_pred hccCChhHHHhhHHHhhhcch
Q 038190 504 NKDENCHECMNLLPSFLSRNQ 524 (531)
Q Consensus 504 ~~~g~~~~a~~~~~~~~~~~~ 524 (531)
...|++++|.+.++.+..-..
T Consensus 718 y~~~~~e~aL~~le~l~LiP~ 738 (835)
T KOG2168|consen 718 YHNGEWEEALSILEHLDLIPL 738 (835)
T ss_pred HhhhHHHHHHHHHHHHhccCC
Confidence 367888888888877654443
No 403
>PF13934 ELYS: Nuclear pore complex assembly
Probab=57.18 E-value=87 Score=27.26 Aligned_cols=113 Identities=9% Similarity=0.052 Sum_probs=63.9
Q ss_pred hHHHHHHHHH--ccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCcchHHHHHHHHHHCCCCCChhhHHHHHHH
Q 038190 89 SFNSLLGALA--GKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRG 166 (531)
Q Consensus 89 ~~~~li~~~~--~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 166 (531)
.|...+.++. ..+++++|++++..- .+. ......++.++...|+...|..++..+.-.. .+......++..
T Consensus 78 ~~~~~~~g~W~LD~~~~~~A~~~L~~p---s~~--~~~~~~Il~~L~~~~~~~lAL~y~~~~~p~l--~s~~~~~~~~~~ 150 (226)
T PF13934_consen 78 KYIKFIQGFWLLDHGDFEEALELLSHP---SLI--PWFPDKILQALLRRGDPKLALRYLRAVGPPL--SSPEALTLYFVA 150 (226)
T ss_pred HHHHHHHHHHHhChHhHHHHHHHhCCC---CCC--cccHHHHHHHHHHCCChhHHHHHHHhcCCCC--CCHHHHHHHHHH
Confidence 3556666644 567788888777322 111 1223357778888899998888887653221 122233333333
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCCCCCcHHhHHHHHHHHH----hcCChhHHH
Q 038190 167 LCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLC----KDGFVNKVR 216 (531)
Q Consensus 167 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~~~~~~a~ 216 (531)
..++.+.+|...-+...... ....+..++..+. +.+..++-.
T Consensus 151 -La~~~v~EAf~~~R~~~~~~-------~~~l~e~l~~~~~~~~~~~~~~~~Ll 196 (226)
T PF13934_consen 151 -LANGLVTEAFSFQRSYPDEL-------RRRLFEQLLEHCLEECARSGRLDELL 196 (226)
T ss_pred -HHcCCHHHHHHHHHhCchhh-------hHHHHHHHHHHHHHHhhhhhHHHHHH
Confidence 66688888887766655421 1334444444444 666655543
No 404
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=56.35 E-value=70 Score=22.70 Aligned_cols=66 Identities=14% Similarity=0.158 Sum_probs=44.0
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 038190 298 AKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEAL 369 (531)
Q Consensus 298 a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~~~~~~a~ 369 (531)
+.+++..+.+.|+- +......+-.+-...|+.+.|.+++..+. .| +..|..++.++...|.-+-|.
T Consensus 21 ~~~v~d~ll~~~il-T~~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg----~~aF~~Fl~aLreT~~~~LA~ 86 (88)
T cd08819 21 TRDVCDKCLEQGLL-TEEDRNRIEAATENHGNESGARELLKRIV-QK----EGWFSKFLQALRETEHHELAR 86 (88)
T ss_pred HHHHHHHHHhcCCC-CHHHHHHHHHhccccCcHHHHHHHHHHhc-cC----CcHHHHHHHHHHHcCchhhhh
Confidence 45677777777643 33333333333336689999999999998 63 456788888888887765553
No 405
>PRK10941 hypothetical protein; Provisional
Probab=54.96 E-value=1.5e+02 Score=26.55 Aligned_cols=57 Identities=16% Similarity=0.011 Sum_probs=31.2
Q ss_pred HHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCcchHHHHHHHHHHC
Q 038190 94 LGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRK 151 (531)
Q Consensus 94 i~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 151 (531)
-.+|.+.++++.|+.+.+.+.... +.++.-+.--.-.|.+.|.+..|..=++..++.
T Consensus 188 K~~~~~~~~~~~AL~~~e~ll~l~-P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~ 244 (269)
T PRK10941 188 KAALMEEKQMELALRASEALLQFD-PEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQ 244 (269)
T ss_pred HHHHHHcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHh
Confidence 344556666666666666665543 334444444444555666666666655555544
No 406
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=54.15 E-value=65 Score=23.20 Aligned_cols=23 Identities=17% Similarity=0.118 Sum_probs=12.5
Q ss_pred HHHHHHhcCChHHHHHHHHHHHH
Q 038190 163 LIRGLCMQGKFTEASGLFTKFVA 185 (531)
Q Consensus 163 li~~~~~~g~~~~a~~~~~~~~~ 185 (531)
+.......|++++|...+++.+.
T Consensus 47 lA~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 47 LAELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHH
Confidence 33444555666666666655544
No 407
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=54.00 E-value=73 Score=26.79 Aligned_cols=34 Identities=24% Similarity=0.327 Sum_probs=24.1
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 038190 310 IIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESE 343 (531)
Q Consensus 310 ~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 343 (531)
..|+..+|..++.++...|+.++|.+..+++...
T Consensus 140 ~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~l 173 (193)
T PF11846_consen 140 RRPDPNVYQRYALALALLGDPEEARQWLARARRL 173 (193)
T ss_pred hCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3567777777777777777777777777776654
No 408
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=53.98 E-value=1e+02 Score=23.83 Aligned_cols=26 Identities=15% Similarity=0.115 Sum_probs=12.7
Q ss_pred CHHHHHHHHHHHHcCCChHHHHHHHH
Q 038190 405 DLTVFNCLVDGLCKSWRLRSAWELFK 430 (531)
Q Consensus 405 ~~~~~~~l~~~~~~~g~~~~A~~~~~ 430 (531)
-...|......+...|++++|.++|+
T Consensus 98 ~A~fY~~wA~~le~~~~~~~A~~I~~ 123 (126)
T PF08311_consen 98 LALFYEEWAEFLEKRGNFKKADEIYQ 123 (126)
T ss_dssp BHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 33445555555555555555555554
No 409
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=53.02 E-value=2.6e+02 Score=29.12 Aligned_cols=125 Identities=15% Similarity=0.142 Sum_probs=71.7
Q ss_pred HHHHHHHHHHHHcCCCCCCCCcHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHhh----------HHHHHHHHHh
Q 038190 174 TEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFV----------YNSLIRVYCC 243 (531)
Q Consensus 174 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~----------~~~li~~~~~ 243 (531)
++-...+++|...-.+|++- ...+...++-.|....+++...++.+.++.. ||..- |...++---+
T Consensus 180 ~~l~~~L~~mR~RlDnp~VL-~~d~V~nlmlSyRDvQdY~amirLVe~Lk~i---P~t~~vve~~nv~f~YaFALNRRNr 255 (1226)
T KOG4279|consen 180 DQLNDYLDKMRTRLDNPDVL-HPDTVSNLMLSYRDVQDYDAMIRLVEDLKRI---PDTLKVVETHNVRFHYAFALNRRNR 255 (1226)
T ss_pred HHHHHHHHHHHhhcCCcccc-CHHHHHHHHhhhccccchHHHHHHHHHHHhC---cchhhhhccCceEEEeeehhcccCC
Confidence 34456677887764455432 3455666777788888999999999988864 33221 2222222223
Q ss_pred cCChhhhhcchHHHHHHHHHHHhCCCCCCccccCCHhhHHH-------HHHHHhcCCCHHHHHHHHHHHHhCCCCCCHH
Q 038190 244 AVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCS-------IINSLCKDVLVDKAKELFLDMKSRGIIPDVV 315 (531)
Q Consensus 244 ~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~-------ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 315 (531)
-|+-+.|+. ..-.+.+..+. +.||...... +-+.|...+..+.|..+|++.-+. .|+..
T Consensus 256 ~GDRakAL~-------~~l~lve~eg~----vapDm~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFev--eP~~~ 321 (1226)
T KOG4279|consen 256 PGDRAKALN-------TVLPLVEKEGP----VAPDMYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFEV--EPLEY 321 (1226)
T ss_pred CccHHHHHH-------HHHHHHHhcCC----CCCceeeeechhhhhhhhccCCcchhhHHHHHHHHHHHhcc--Cchhh
Confidence 344444444 55555544432 6677554322 123345566677888888877654 45443
No 410
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=52.79 E-value=2.2e+02 Score=27.44 Aligned_cols=26 Identities=19% Similarity=0.126 Sum_probs=19.8
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHhh
Q 038190 199 YASIIDGLCKDGFVNKVRVLFLDMKG 224 (531)
Q Consensus 199 ~~~l~~~~~~~~~~~~a~~~~~~m~~ 224 (531)
...+|+-|...|+..+..+.++.+-.
T Consensus 348 ~~~IIqEYFlsgDt~Evi~~L~DLn~ 373 (645)
T KOG0403|consen 348 LTPIIQEYFLSGDTPEVIRSLRDLNL 373 (645)
T ss_pred hHHHHHHHHhcCChHHHHHHHHHcCC
Confidence 45678888888998888888876543
No 411
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=52.50 E-value=1.7e+02 Score=26.10 Aligned_cols=27 Identities=22% Similarity=0.124 Sum_probs=20.2
Q ss_pred CHHHHHHHHHHHHcCCChHHHHHHHHH
Q 038190 405 DLTVFNCLVDGLCKSWRLRSAWELFKK 431 (531)
Q Consensus 405 ~~~~~~~l~~~~~~~g~~~~A~~~~~~ 431 (531)
|+.....+...|.+.|++.+|+..|-.
T Consensus 89 dp~LH~~~a~~~~~e~~~~~A~~Hfl~ 115 (260)
T PF04190_consen 89 DPELHHLLAEKLWKEGNYYEAERHFLL 115 (260)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHHT
T ss_pred CHHHHHHHHHHHHhhccHHHHHHHHHh
Confidence 777888888999999999888866643
No 412
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=52.16 E-value=44 Score=22.15 Aligned_cols=49 Identities=16% Similarity=0.095 Sum_probs=31.3
Q ss_pred CChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHc
Q 038190 85 PFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCK 134 (531)
Q Consensus 85 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~ 134 (531)
|....++.++..++...-.++++..+.++...| ..+..+|..-++.+++
T Consensus 6 ~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g-~I~~d~~lK~vR~LaR 54 (65)
T PF09454_consen 6 AEDPLSNQLYELVAEDHAIEDTIYYLDRALQRG-SIDLDTFLKQVRSLAR 54 (65)
T ss_dssp -SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SS-HHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence 445566777777777777777777777777776 3455666666665554
No 413
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=51.79 E-value=29 Score=31.21 Aligned_cols=39 Identities=13% Similarity=0.056 Sum_probs=29.6
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHH
Q 038190 89 SFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNI 127 (531)
Q Consensus 89 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ 127 (531)
.|+..|....+.||+++|+.++++..+.|+.--..+|-.
T Consensus 259 Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFik 297 (303)
T PRK10564 259 YFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFIS 297 (303)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHHH
Confidence 467888888888899999999988888886544444433
No 414
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=51.73 E-value=2e+02 Score=26.51 Aligned_cols=94 Identities=16% Similarity=0.108 Sum_probs=41.4
Q ss_pred CHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHhC-CCCCCHH
Q 038190 329 RIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNT-KFELDLT 407 (531)
Q Consensus 329 ~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~ 407 (531)
+.+....++..+.+.+..| +-...+..+.++--..++..|.+.+ ...+++..+..+...+. |-.--..
T Consensus 37 ~~~~~e~l~~~Ird~~Map-------~Ye~lce~~~i~~D~~~l~~m~~~n----eeki~eld~~iedaeenlGE~ev~e 105 (393)
T KOG0687|consen 37 KAAAREKLLAAIRDEDMAP-------LYEYLCESLVIKLDQDLLNSMKKAN----EEKIKELDEKIEDAEENLGESEVRE 105 (393)
T ss_pred CHHHHHHHHHHHHhcccch-------HHHHHHhhcceeccHHHHHHHHHhh----HHHHHHHHHHHHHHHHhcchHHHHH
Confidence 4444455555555544332 4444444444444444555554432 12222333333333322 1111223
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHhh
Q 038190 408 VFNCLVDGLCKSWRLRSAWELFKKLP 433 (531)
Q Consensus 408 ~~~~l~~~~~~~g~~~~A~~~~~~~~ 433 (531)
.+-....-||+-|+.+.|.+.+.+-.
T Consensus 106 a~~~kaeYycqigDkena~~~~~~t~ 131 (393)
T KOG0687|consen 106 AMLRKAEYYCQIGDKENALEALRKTY 131 (393)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 44445555666666666665555443
No 415
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=51.71 E-value=59 Score=20.49 Aligned_cols=25 Identities=24% Similarity=0.139 Sum_probs=19.0
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHH
Q 038190 446 VMICGLCIEGGIEKAYDLLPDMEEK 470 (531)
Q Consensus 446 ~l~~~~~~~g~~~~A~~~~~~~~~~ 470 (531)
.+.-++.+.|++++|.+..+.+.+.
T Consensus 6 ~lAig~ykl~~Y~~A~~~~~~lL~~ 30 (53)
T PF14853_consen 6 YLAIGHYKLGEYEKARRYCDALLEI 30 (53)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhh
Confidence 4556788999999998888877765
No 416
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=51.42 E-value=1.5e+02 Score=24.92 Aligned_cols=56 Identities=18% Similarity=0.162 Sum_probs=35.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCC--------------CCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 038190 319 SLIDGYCLMGRIDDARKLFVSIESEGC--------------IPDTSSYNTLINSYSKIEKVEEALSLYGE 374 (531)
Q Consensus 319 ~ll~~~~~~g~~~~a~~~~~~~~~~g~--------------~p~~~~~~~li~~~~~~~~~~~a~~~~~~ 374 (531)
.++..|-+..++.+..++++.|.+..+ .+--...|.....+.+.|..+.|+.++++
T Consensus 137 S~m~~Yhk~~qW~KGrkvLd~l~el~i~ft~LKGL~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLre 206 (233)
T PF14669_consen 137 SLMYSYHKTLQWSKGRKVLDKLHELQIHFTSLKGLTGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLRE 206 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCccCccccCchhhhHHHHHHHHHHcCCchHHHHHHhc
Confidence 344556666667777777766654321 12334556777788888888888888763
No 417
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=51.14 E-value=89 Score=22.37 Aligned_cols=31 Identities=23% Similarity=0.233 Sum_probs=17.3
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 038190 156 DVVTLGCLIRGLCMQGKFTEASGLFTKFVAF 186 (531)
Q Consensus 156 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 186 (531)
|....-.+...+...|++++|++.+-+++..
T Consensus 21 D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~ 51 (90)
T PF14561_consen 21 DLDARYALADALLAAGDYEEALDQLLELVRR 51 (90)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 4445555556666666666666666666554
No 418
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=50.74 E-value=1.2e+02 Score=23.76 Aligned_cols=78 Identities=13% Similarity=0.049 Sum_probs=52.4
Q ss_pred CCHHHHHHHHHHHHcCC---ChHHHHHHHHHhhhCCCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhHHHHHH
Q 038190 404 LDLTVFNCLVDGLCKSW---RLRSAWELFKKLPRYGPE-PNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECLKAIE 479 (531)
Q Consensus 404 ~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~g~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~i~~~~~a~~ 479 (531)
++..+--.+.+++.+.. ++.+...+++.+.+...+ -......-|.-++.+.+++++++++.+...+.-.+..+|..
T Consensus 30 ~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~ 109 (149)
T KOG3364|consen 30 VSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALE 109 (149)
T ss_pred chHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHH
Confidence 35556666777777765 466778888888862211 12333445666788999999999999988887556666665
Q ss_pred HH
Q 038190 480 LL 481 (531)
Q Consensus 480 ~~ 481 (531)
+-
T Consensus 110 Lk 111 (149)
T KOG3364|consen 110 LK 111 (149)
T ss_pred HH
Confidence 43
No 419
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=50.46 E-value=3.1e+02 Score=28.49 Aligned_cols=45 Identities=16% Similarity=0.011 Sum_probs=27.6
Q ss_pred hhHHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHhccCChhHHHhhHH
Q 038190 472 RECLKAIELLHKMAKRYVKPDE--ITVSILEELLNKDENCHECMNLLP 517 (531)
Q Consensus 472 ~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~a~~~~~ 517 (531)
|+.++|--+.++|.... .|-. .-.-++..+|+-.|+-....+++.
T Consensus 515 grqe~Ad~lI~el~~dk-dpilR~~Gm~t~alAy~GTgnnkair~lLh 561 (929)
T KOG2062|consen 515 GRQEDADPLIKELLRDK-DPILRYGGMYTLALAYVGTGNNKAIRRLLH 561 (929)
T ss_pred hhhhhhHHHHHHHhcCC-chhhhhhhHHHHHHHHhccCchhhHHHhhc
Confidence 78888888888888432 2221 112246667777777666655553
No 420
>PHA02875 ankyrin repeat protein; Provisional
Probab=49.90 E-value=2.5e+02 Score=27.13 Aligned_cols=11 Identities=9% Similarity=0.184 Sum_probs=4.9
Q ss_pred HHHhcCChHHH
Q 038190 166 GLCMQGKFTEA 176 (531)
Q Consensus 166 ~~~~~g~~~~a 176 (531)
..+..|+.+.+
T Consensus 74 ~A~~~g~~~~v 84 (413)
T PHA02875 74 DAVEEGDVKAV 84 (413)
T ss_pred HHHHCCCHHHH
Confidence 34444554443
No 421
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=49.71 E-value=1.2e+02 Score=27.60 Aligned_cols=58 Identities=17% Similarity=0.240 Sum_probs=47.3
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh
Q 038190 299 KELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSK 361 (531)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~ 361 (531)
.++|+.+.+.++.|.-..+.-+.-.+.+.=.+.+...+|+.+.. |..-|..|+..|+.
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~s-----D~~rfd~Ll~iCcs 320 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLS-----DPQRFDFLLYICCS 320 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhc-----ChhhhHHHHHHHHH
Confidence 57888888899999988888888888888889999999999886 44457777777764
No 422
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=49.53 E-value=1.1e+02 Score=28.41 Aligned_cols=64 Identities=13% Similarity=-0.036 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHhCCCCCCH----hhHHHHHHHHHccCCcchHHHHHHHHHHCCCCCChhhHHHHHHHHH
Q 038190 103 YVNFICLSERLNTIGLLPDF----VSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLC 168 (531)
Q Consensus 103 ~~~a~~~~~~m~~~g~~~~~----~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 168 (531)
.++++.+++.++.. -|+. .-|..+++.....|.++.++.+|+.++..|..|-......++..+-
T Consensus 119 ~eei~~~L~~li~~--IP~A~K~aKYWIC~Arl~~~~~~~e~vi~iyEeAi~agAqPieElR~~l~diL~ 186 (353)
T PF15297_consen 119 KEEILATLSDLIKN--IPDAKKLAKYWICLARLEPRTGPIEDVIAIYEEAILAGAQPIEELRHVLVDILK 186 (353)
T ss_pred HHHHHHHHHHHHhc--CchHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence 34556666666544 3443 2466666777777777777777777777777776666666666655
No 423
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=49.24 E-value=1.8e+02 Score=25.47 Aligned_cols=59 Identities=14% Similarity=0.027 Sum_probs=41.5
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHh
Q 038190 284 SIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCL-MGRIDDARKLFVSIES 342 (531)
Q Consensus 284 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~-~g~~~~a~~~~~~~~~ 342 (531)
.++..+.+.++++++...++++...+...+..-.+.|-.+|-. .|....+++++..+.+
T Consensus 6 ~~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e~ 65 (236)
T PF00244_consen 6 YLAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSIEQ 65 (236)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhHhh
Confidence 4667788899999999999999998777777767766666643 4555666666666554
No 424
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=49.19 E-value=2.1e+02 Score=26.10 Aligned_cols=44 Identities=14% Similarity=0.264 Sum_probs=35.1
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 038190 334 RKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMIS 377 (531)
Q Consensus 334 ~~~~~~~~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 377 (531)
.++|+.+.+.++.|.-.+|.-+.-.+.+.=.+.+.+.+|+.+..
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~s 306 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLS 306 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhc
Confidence 46777788888888888887777777777788888888888876
No 425
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=49.05 E-value=11 Score=34.32 Aligned_cols=91 Identities=11% Similarity=-0.030 Sum_probs=67.6
Q ss_pred HccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCcchHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHH
Q 038190 98 AGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEAS 177 (531)
Q Consensus 98 ~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 177 (531)
...|.++.|++.|...+..+ ++....|..-..++.+.+.+..|+.=++..+..... +..-|-.--.+-...|++++|.
T Consensus 125 ln~G~~~~ai~~~t~ai~ln-p~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~D-sa~~ykfrg~A~rllg~~e~aa 202 (377)
T KOG1308|consen 125 LNDGEFDTAIELFTSAIELN-PPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPD-SAKGYKFRGYAERLLGNWEEAA 202 (377)
T ss_pred hcCcchhhhhcccccccccC-CchhhhcccccceeeeccCCchhhhhhhhhhccCcc-cccccchhhHHHHHhhchHHHH
Confidence 35688999999999888876 666777888888888999999998888888876432 2233333334444568899998
Q ss_pred HHHHHHHHcCCCC
Q 038190 178 GLFTKFVAFDCRP 190 (531)
Q Consensus 178 ~~~~~~~~~~~~~ 190 (531)
..|....+.+..+
T Consensus 203 ~dl~~a~kld~dE 215 (377)
T KOG1308|consen 203 HDLALACKLDYDE 215 (377)
T ss_pred HHHHHHHhccccH
Confidence 8888888877766
No 426
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=49.03 E-value=2.2e+02 Score=26.33 Aligned_cols=90 Identities=17% Similarity=0.179 Sum_probs=0.0
Q ss_pred hHHHHHHHHhcCCCHHHHHHHHHHHHhC---CCCCCHHHH--HHHHHHHHhcCCHHHHHHHHHHHHh-----cCCCCCHH
Q 038190 281 SYCSIINSLCKDVLVDKAKELFLDMKSR---GIIPDVVVY--SSLIDGYCLMGRIDDARKLFVSIES-----EGCIPDTS 350 (531)
Q Consensus 281 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~--~~ll~~~~~~g~~~~a~~~~~~~~~-----~g~~p~~~ 350 (531)
....++...-+.++.++|+++++++.+. .-.|+...| ......+...||..++.+++++... .|+.|++.
T Consensus 77 lvei~l~~~~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v~~~Vh 156 (380)
T KOG2908|consen 77 LVEILLVVSEQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDGVTSNVH 156 (380)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCCChhhh
Q ss_pred HHHHHHH--HHHhcCCHHHHHH
Q 038190 351 SYNTLIN--SYSKIEKVEEALS 370 (531)
Q Consensus 351 ~~~~li~--~~~~~~~~~~a~~ 370 (531)
+--..+. .|-..|++.....
T Consensus 157 ~~fY~lssqYyk~~~d~a~yYr 178 (380)
T KOG2908|consen 157 SSFYSLSSQYYKKIGDFASYYR 178 (380)
T ss_pred hhHHHHHHHHHHHHHhHHHHHH
No 427
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=48.96 E-value=24 Score=27.34 Aligned_cols=31 Identities=26% Similarity=0.423 Sum_probs=21.2
Q ss_pred hcCChhHHHHHHHHHhhCCCCCCHhhHHHHHHH
Q 038190 208 KDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRV 240 (531)
Q Consensus 208 ~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~ 240 (531)
..|.-..|..+|..|.+.|-+||. |+.|+..
T Consensus 107 ~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~ 137 (140)
T PF11663_consen 107 AYGSKTDAYAVFRKMLERGNPPDD--WDALLKE 137 (140)
T ss_pred hhccCCcHHHHHHHHHhCCCCCcc--HHHHHHH
Confidence 345566678888888888877774 5666544
No 428
>PRK13342 recombination factor protein RarA; Reviewed
Probab=48.32 E-value=2.7e+02 Score=27.04 Aligned_cols=38 Identities=13% Similarity=0.151 Sum_probs=29.1
Q ss_pred cCCChHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHcC
Q 038190 418 KSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEG 455 (531)
Q Consensus 418 ~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g 455 (531)
+.++.+.|+.++.+|.+.|..|....-..++.++-.-|
T Consensus 242 rgsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~edig 279 (413)
T PRK13342 242 RGSDPDAALYYLARMLEAGEDPLFIARRLVIIASEDIG 279 (413)
T ss_pred hcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhc
Confidence 35789999999999999988887666666666655554
No 429
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=48.19 E-value=1e+02 Score=22.11 Aligned_cols=58 Identities=16% Similarity=0.009 Sum_probs=28.6
Q ss_pred HHcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCC-CHhhHHHHHHHHHccCC
Q 038190 79 IHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLP-DFVSLNILMNCFCKMIG 137 (531)
Q Consensus 79 ~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~-~~~~~~~li~~~~~~g~ 137 (531)
...+|. |...--.+...+...|+++.|++.+-.+++..-.. +...-..++..+.-.|.
T Consensus 15 ~a~~P~-D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~ 73 (90)
T PF14561_consen 15 LAANPD-DLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGP 73 (90)
T ss_dssp HHHSTT--HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-T
T ss_pred HHcCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCC
Confidence 333444 55566666666677777777777766666543221 22333444444444443
No 430
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=48.11 E-value=85 Score=24.97 Aligned_cols=64 Identities=11% Similarity=-0.095 Sum_probs=46.9
Q ss_pred HHHHHHcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCcc
Q 038190 75 FNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVS 139 (531)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~ 139 (531)
.+.+.+.|.+++. --..++..+.+.++.-.|.++|+++.+.+...+..|....++.+...|-+.
T Consensus 9 ~~~lk~~glr~T~-qR~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~Glv~ 72 (145)
T COG0735 9 IERLKEAGLRLTP-QRLAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAGLVH 72 (145)
T ss_pred HHHHHHcCCCcCH-HHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCCCEE
Confidence 3444556665443 346678888888888999999999999887777777777777777776443
No 431
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=46.99 E-value=2.9e+02 Score=27.09 Aligned_cols=360 Identities=12% Similarity=0.011 Sum_probs=181.5
Q ss_pred CHHHHHHHHHHHHHcC-CCCCh-----hhHHHHHHHHHccC-CHHHHHHHHHHHHhCC--CC-CCHhhHHHHHHHHHccC
Q 038190 67 ELNDALCFFNYMIHMQ-PTPFM-----PSFNSLLGALAGKK-YYVNFICLSERLNTIG--LL-PDFVSLNILMNCFCKMI 136 (531)
Q Consensus 67 ~~~~A~~~~~~~~~~~-~~~~~-----~~~~~li~~~~~~~-~~~~a~~~~~~m~~~g--~~-~~~~~~~~li~~~~~~g 136 (531)
+++.|..-++...... .-|+. .++..|...|.+.. .+..+..++++.++.. ++ -.-.....|+..+.-..
T Consensus 62 N~elAksHLekA~~i~~~ip~fydvKf~a~SlLa~lh~~~~~s~~~~KalLrkaielsq~~p~wsckllfQLaql~~idk 141 (629)
T KOG2300|consen 62 NVELAKSHLEKAWLISKSIPSFYDVKFQAASLLAHLHHQLAQSFPPAKALLRKAIELSQSVPYWSCKLLFQLAQLHIIDK 141 (629)
T ss_pred cHHHHHHHHHHHHHHHcccccHHhhhhHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhhhc
Confidence 6777777766654321 22332 35666777777665 7888888998887643 21 01112234555666678
Q ss_pred CcchHHHHHHHHHHCCCCCChhhHHHHHHHH------HhcC---ChHHHHHHHHHHHHcCCCCCCCC----cHHhHHHHH
Q 038190 137 GVSDAFVALGRILRKVFSPDVVTLGCLIRGL------CMQG---KFTEASGLFTKFVAFDCRPNVIP----NVICYASII 203 (531)
Q Consensus 137 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~------~~~g---~~~~a~~~~~~~~~~~~~~~~~~----~~~~~~~l~ 203 (531)
++..|.+++.---.. -.+-...|.-++..+ .... ++..+.....+|.+.- .++... .+.-.+.-+
T Consensus 142 D~~sA~elLavga~s-Ad~~~~~ylr~~ftls~~~ll~me~d~~dV~~ll~~~~qi~~n~-~sdk~~~E~LkvFyl~lql 219 (629)
T KOG2300|consen 142 DFPSALELLAVGAES-ADHICFPYLRMLFTLSMLMLLIMERDDYDVEKLLQRCGQIWQNI-SSDKTQKEMLKVFYLVLQL 219 (629)
T ss_pred cchhHHHHHhccccc-cchhhhHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcc-CCChHHHHHHHHHHHHHHH
Confidence 888888874322111 111222332222211 1222 3444444555555431 221000 011122223
Q ss_pred HHHHhcCChhHHHHHHHHHhhC---CC------------CCCHhhHHHHHH----H---------HHhcCChhhhhcchH
Q 038190 204 DGLCKDGFVNKVRVLFLDMKGR---GI------------YPDAFVYNSLIR----V---------YCCAVNWEDAKGNTS 255 (531)
Q Consensus 204 ~~~~~~~~~~~a~~~~~~m~~~---g~------------~p~~~~~~~li~----~---------~~~~~~~~~a~~~~~ 255 (531)
..|.-.|+...+...++++.+. +. .|....+..+.. + -...|-++++.+..+
T Consensus 220 ~yy~~~gq~rt~k~~lkQLQ~siqtist~~~~h~e~ilgsps~~l~~wlpkeqicaLV~l~tv~hsm~~gy~~~~~K~tD 299 (629)
T KOG2300|consen 220 SYYLLPGQVRTVKPALKQLQDSIQTISTSSRGHDEKILGSPSPILFEWLPKEQICALVYLVTVIHSMPAGYFKKAQKYTD 299 (629)
T ss_pred HHHhcccchhhhHHHHHHHHHHHhccCCCCCCccccccCCCChHHHhhccHhhhHhhhhhhHHhhhhhhHHHHHHHHHHH
Confidence 4566678888888887776532 11 122222221111 1 113455667777777
Q ss_pred HHHHHHHHHHhCCCCCCccccCC-----HhhHHHHHHHHhcCCCHHHHHHHHHHHHhCC-CCCCHH-------HHHHHHH
Q 038190 256 AALELHEEFVNGNGELGVICHPD-----VLSYCSIINSLCKDVLVDKAKELFLDMKSRG-IIPDVV-------VYSSLID 322 (531)
Q Consensus 256 ~a~~~~~~~~~~~~~~~~~~~~~-----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~-------~~~~ll~ 322 (531)
+++...++....+. ..|- ..+...++-+-.-.|++.+|++-+..|.+-. -.|.+. ....++.
T Consensus 300 e~i~q~eklkq~d~-----~srilsm~km~~LE~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlG 374 (629)
T KOG2300|consen 300 EAIKQTEKLKQADL-----MSRILSMFKMILLEHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLG 374 (629)
T ss_pred HHHHHHhhcccccc-----hhHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHh
Confidence 77777666655441 1111 1112222222345789999998888887642 123311 1223333
Q ss_pred H-HHhcCCHHHHHHHHHHHHhcCCCCCHHHH--HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC----------------
Q 038190 323 G-YCLMGRIDDARKLFVSIESEGCIPDTSSY--NTLINSYSKIEKVEEALSLYGEMISMGVRPD---------------- 383 (531)
Q Consensus 323 ~-~~~~g~~~~a~~~~~~~~~~g~~p~~~~~--~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~---------------- 383 (531)
. ++..+.++.|+.-|....+.--..|...+ ..+...|.+.|+.+.-.++++.+--.+-.+-
T Consensus 375 lys~sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi~YL~~~~~ed~y~~ld~i~p~nt~s~ssq~l~a~~~~v~glf 454 (629)
T KOG2300|consen 375 LYSHSVNCYENAEFHFIEATKLTESIDLQAFCNLNLAISYLRIGDAEDLYKALDLIGPLNTNSLSSQRLEASILYVYGLF 454 (629)
T ss_pred hHhhhcchHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHHHHhccHHHHHHHHHhcCCCCCCcchHHHHHHHHHHHHHHH
Confidence 3 44578899999988887654322333333 2345578888887777776665533221111
Q ss_pred ---cccHHHHHHHHHHHHhCCCCCC-----HHHHHHHHHHHHcCCChHHHHHHHHHhh
Q 038190 384 ---NSCILEAAELFRTLHNTKFELD-----LTVFNCLVDGLCKSWRLRSAWELFKKLP 433 (531)
Q Consensus 384 ---~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 433 (531)
.+++.+|...+.+..+..-.-| .-....|...+...|+..++.+...-..
T Consensus 455 af~qn~lnEaK~~l~e~Lkmanaed~~rL~a~~LvLLs~v~lslgn~~es~nmvrpam 512 (629)
T KOG2300|consen 455 AFKQNDLNEAKRFLRETLKMANAEDLNRLTACSLVLLSHVFLSLGNTVESRNMVRPAM 512 (629)
T ss_pred HHHhccHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHhcchHHHHhccchHH
Confidence 5666677766665553221111 1122233344455677777666655433
No 432
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=46.78 E-value=1.6e+02 Score=26.09 Aligned_cols=61 Identities=13% Similarity=0.009 Sum_probs=36.9
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHhccCChhHHHhhHHHh
Q 038190 446 VMICGLCIEGGIEKAYDLLPDMEEKIRECLKAIELLHKMAKRYV-KPDEITVSILEELLNKDENCHECMNLLPSF 519 (531)
Q Consensus 446 ~l~~~~~~~g~~~~A~~~~~~~~~~i~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 519 (531)
.+..-|.+.|++++|+++|+.+... -.+.|. .+...+...+..++.+.|+.++...+.=++
T Consensus 183 ~~A~ey~~~g~~~~A~~~l~~~~~~-------------yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leL 244 (247)
T PF11817_consen 183 EMAEEYFRLGDYDKALKLLEPAASS-------------YRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLEL 244 (247)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHH-------------HHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 4556677788888887777654221 122232 233456666777777788877766654443
No 433
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=46.53 E-value=59 Score=31.35 Aligned_cols=104 Identities=14% Similarity=0.024 Sum_probs=51.2
Q ss_pred HHHHccCCcchHHHHHHHHHHCCCCCChh-hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCCCcHHhHHHHHHHHHh
Q 038190 130 NCFCKMIGVSDAFVALGRILRKVFSPDVV-TLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCK 208 (531)
Q Consensus 130 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 208 (531)
.-+.+.+.++.|..++.++++. .||.. .|..-..++.+.+++..|+.=+...++.. |. ....|.-=..++.+
T Consensus 12 n~~l~~~~fd~avdlysKaI~l--dpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~d--P~---~~K~Y~rrg~a~m~ 84 (476)
T KOG0376|consen 12 NEALKDKVFDVAVDLYSKAIEL--DPNCAIYFANRALAHLKVESFGGALHDALKAIELD--PT---YIKAYVRRGTAVMA 84 (476)
T ss_pred hhhcccchHHHHHHHHHHHHhc--CCcceeeechhhhhheeechhhhHHHHHHhhhhcC--ch---hhheeeeccHHHHh
Confidence 3344556666666666666665 34333 33334456666666666666555555532 21 12222222333334
Q ss_pred cCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHH
Q 038190 209 DGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYC 242 (531)
Q Consensus 209 ~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~ 242 (531)
.+.+.+|+..|+.... +.|+..-....++-|-
T Consensus 85 l~~~~~A~~~l~~~~~--l~Pnd~~~~r~~~Ec~ 116 (476)
T KOG0376|consen 85 LGEFKKALLDLEKVKK--LAPNDPDATRKIDECN 116 (476)
T ss_pred HHHHHHHHHHHHHhhh--cCcCcHHHHHHHHHHH
Confidence 4444445544444443 3455555555554443
No 434
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=46.37 E-value=2.6e+02 Score=26.45 Aligned_cols=112 Identities=17% Similarity=-0.052 Sum_probs=69.4
Q ss_pred HhhHHHHHHHHHhcCChhhhhcchHHHHHHHHHHHhCCC-------CCCc-----cccCCHhhHHH---HHHHHhcCCCH
Q 038190 231 AFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNG-------ELGV-----ICHPDVLSYCS---IINSLCKDVLV 295 (531)
Q Consensus 231 ~~~~~~li~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~-------~~~~-----~~~~~~~~~~~---ll~~~~~~~~~ 295 (531)
..++-.+-..+...|+...|.+.+++|+-.|+....... ..|. ...-|...|.+ .|..+.+.|-+
T Consensus 40 idtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i~~L~~RG~~ 119 (360)
T PF04910_consen 40 IDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYIQSLGRRGCW 119 (360)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHHHHHHhcCcH
Confidence 334444444555555555555555555555554332221 0000 01112333333 46778899999
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHH-hcCCHHHHHHHHHHHHh
Q 038190 296 DKAKELFLDMKSRGIIPDVVVYSSLIDGYC-LMGRIDDARKLFVSIES 342 (531)
Q Consensus 296 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~-~~g~~~~a~~~~~~~~~ 342 (531)
..|+++.+-+......-|+.....+|+.|+ +.++++-.+++.+....
T Consensus 120 rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~ 167 (360)
T PF04910_consen 120 RTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLA 167 (360)
T ss_pred HHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhh
Confidence 999999999998876667777788888776 57888888888887655
No 435
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=45.96 E-value=4e+02 Score=28.44 Aligned_cols=75 Identities=13% Similarity=0.135 Sum_probs=51.7
Q ss_pred HcCCHHHHHHHHHHHHHHH---------------------------------------hhHHHHHHHHHHHHHcCCCCCH
Q 038190 453 IEGGIEKAYDLLPDMEEKI---------------------------------------RECLKAIELLHKMAKRYVKPDE 493 (531)
Q Consensus 453 ~~g~~~~A~~~~~~~~~~i---------------------------------------~~~~~a~~~~~~~~~~~~~~~~ 493 (531)
..|++.+|++.|+.++-.| ...+++.++-.......++|-.
T Consensus 1003 t~gKf~eAie~Frsii~~i~l~vvd~~~e~aea~~li~i~~eYi~gL~~E~~Rr~l~~~~~~~~~ElAaYFt~~~Lqp~H 1082 (1202)
T KOG0292|consen 1003 TEGKFGEAIEKFRSIIYSIPLLVVDSKEEEAEADELIKICREYIVGLSVELERRKLKKPNLEQQLELAAYFTHCKLQPMH 1082 (1202)
T ss_pred ccCcHHHHHHHHHHHHhheeEEEecchhhHHHHHHHHHHHHHHHhhheeeeeecccCCchHHHHHHHHHHhhcCCCCcHH
Confidence 5788999999888877651 2334444444444455666665
Q ss_pred H--HHHHHHHHHhccCChhHHHhhHHHhhhcchhhh
Q 038190 494 I--TVSILEELLNKDENCHECMNLLPSFLSRNQEES 527 (531)
Q Consensus 494 ~--~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 527 (531)
. +....+.++.+.+++..|-.+..++....+.++
T Consensus 1083 ~ilalrtA~n~ffK~kN~ktAs~fa~rLlel~~~~~ 1118 (1202)
T KOG0292|consen 1083 RILALRTAMNVFFKLKNLKTAAEFARRLLELAPSPP 1118 (1202)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCh
Confidence 4 456678889999999999888888777666443
No 436
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=45.41 E-value=48 Score=19.15 Aligned_cols=32 Identities=34% Similarity=0.422 Sum_probs=23.6
Q ss_pred hHHHHHHHHHhcCChhhhhcchHHHHHHHHHH
Q 038190 233 VYNSLIRVYCCAVNWEDAKGNTSAALELHEEF 264 (531)
Q Consensus 233 ~~~~li~~~~~~~~~~~a~~~~~~a~~~~~~~ 264 (531)
+|..+.......++++.|...+..++++.+++
T Consensus 3 v~~~Lgeisle~e~f~qA~~D~~~aL~i~~~l 34 (38)
T PF10516_consen 3 VYDLLGEISLENENFEQAIEDYEKALEIQEEL 34 (38)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHh
Confidence 45666667777788888888888888777665
No 437
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=45.24 E-value=1.1e+02 Score=21.67 Aligned_cols=42 Identities=17% Similarity=0.139 Sum_probs=20.7
Q ss_pred HHHHHHHhCCCCCCHhhHHHHHHHHHccCCcchHHHHHHHHH
Q 038190 108 CLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRIL 149 (531)
Q Consensus 108 ~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 149 (531)
++|+-....|+..|+..|..++....-.=.++...+++..|.
T Consensus 29 EL~ELa~~AGv~~dp~VFriildLL~~nVsP~AI~qmLK~m~ 70 (88)
T PF12926_consen 29 ELYELAQLAGVPMDPEVFRIILDLLRLNVSPDAIFQMLKSMC 70 (88)
T ss_pred HHHHHHHHhCCCcChHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 455555555555555555555554444444444444444443
No 438
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=45.10 E-value=4.1e+02 Score=28.30 Aligned_cols=43 Identities=16% Similarity=0.217 Sum_probs=23.8
Q ss_pred HHHHHHHhcCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChhhhhc
Q 038190 201 SIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKG 252 (531)
Q Consensus 201 ~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~ 252 (531)
+....+...|+.++...+-.-|.. |..++.-+.+.+.+++|++
T Consensus 509 tv~~l~~~~~~~e~ll~fA~l~~d---------~~~vv~~~~q~e~yeeaLe 551 (911)
T KOG2034|consen 509 TVYQLLASHGRQEELLQFANLIKD---------YEFVVSYWIQQENYEEALE 551 (911)
T ss_pred HHHHHHHHccCHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHH
Confidence 333444455555555544444432 4556666777777766666
No 439
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=44.39 E-value=50 Score=18.23 Aligned_cols=25 Identities=12% Similarity=0.325 Sum_probs=18.0
Q ss_pred ChHHHHHHHHHhhhCCCCCcHHHHHHH
Q 038190 421 RLRSAWELFKKLPRYGPEPNVVTYTVM 447 (531)
Q Consensus 421 ~~~~A~~~~~~~~~~g~~p~~~~~~~l 447 (531)
.++.|..+|++.+.. .|++.+|...
T Consensus 2 E~dRAR~IyeR~v~~--hp~~k~Wiky 26 (32)
T PF02184_consen 2 EFDRARSIYERFVLV--HPEVKNWIKY 26 (32)
T ss_pred hHHHHHHHHHHHHHh--CCCchHHHHH
Confidence 467888888888874 5777776543
No 440
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=44.30 E-value=4.2e+02 Score=28.22 Aligned_cols=295 Identities=10% Similarity=0.033 Sum_probs=134.4
Q ss_pred HHHHccCCcchHHHHHHHHHHCCCCCCh--hhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCCCcHHhHHHHHHHHH
Q 038190 130 NCFCKMIGVSDAFVALGRILRKVFSPDV--VTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLC 207 (531)
Q Consensus 130 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 207 (531)
+.|...|+++.|+++-+. .|+. .++..-...|.+.+++..|-+++.++.+ .|..+.--+.
T Consensus 366 k~yLd~g~y~kAL~~ar~------~p~~le~Vl~~qAdf~f~~k~y~~AA~~yA~t~~------------~FEEVaLKFl 427 (911)
T KOG2034|consen 366 KTYLDKGEFDKALEIART------RPDALETVLLKQADFLFQDKEYLRAAEIYAETLS------------SFEEVALKFL 427 (911)
T ss_pred HHHHhcchHHHHHHhccC------CHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhh------------hHHHHHHHHH
Confidence 345555666666554322 1222 2333445566777888888888887743 2444555555
Q ss_pred hcCChhHHHHHHHHHhhCCCCCCHhhHHH-----HHHHHH-hcCChh----hhhcchHHHHHHHH-HHHhCCCCCCcccc
Q 038190 208 KDGFVNKVRVLFLDMKGRGIYPDAFVYNS-----LIRVYC-CAVNWE----DAKGNTSAALELHE-EFVNGNGELGVICH 276 (531)
Q Consensus 208 ~~~~~~~a~~~~~~m~~~g~~p~~~~~~~-----li~~~~-~~~~~~----~a~~~~~~a~~~~~-~~~~~~~~~~~~~~ 276 (531)
...+.+.-..++.+=.+ .+.|...+-.. ++..|. +.++.+ ++...++.-.+-+. .+..... ..
T Consensus 428 ~~~~~~~L~~~L~KKL~-~lt~~dk~q~~~Lv~WLlel~L~~Ln~l~~~de~~~en~~~~~~~~~re~~~~~~-----~~ 501 (911)
T KOG2034|consen 428 EINQERALRTFLDKKLD-RLTPEDKTQRDALVTWLLELYLEQLNDLDSTDEEALENWRLEYDEVQREFSKFLV-----LH 501 (911)
T ss_pred hcCCHHHHHHHHHHHHh-hCChHHHHHHHHHHHHHHHHHHHHHhcccccChhHHHHHHHHHHHHHHHHHHHHH-----hh
Confidence 55555533333322222 23333322221 222222 223222 22222222222111 1111000 11
Q ss_pred CCHhhHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC----CC--CHH
Q 038190 277 PDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGC----IP--DTS 350 (531)
Q Consensus 277 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~----~p--~~~ 350 (531)
.+.....+.-..+...|+.+.+..+-.-|.+ |..++..+.+.|.+++|.+++..-..... .| -..
T Consensus 502 ~~~~nretv~~l~~~~~~~e~ll~fA~l~~d---------~~~vv~~~~q~e~yeeaLevL~~~~~~el~yk~ap~Li~~ 572 (911)
T KOG2034|consen 502 KDELNRETVYQLLASHGRQEELLQFANLIKD---------YEFVVSYWIQQENYEEALEVLLNQRNPELFYKYAPELITH 572 (911)
T ss_pred HHhhhHHHHHHHHHHccCHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHhccchhhHHHhhhHHHhc
Confidence 2223344445555667777777665544432 56778888889999999888765421100 00 001
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHH
Q 038190 351 SYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFK 430 (531)
Q Consensus 351 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 430 (531)
.-...+.++.+.++......+.--+.-..-.+.......+....+.....-..-++..+|.++..|++..+-+ ....++
T Consensus 573 ~p~~tV~~wm~~~d~~~~~li~~~L~~~~~~~~~~~~~~~i~yl~f~~~~l~~~~~~ihn~ll~lya~~~~~~-ll~~le 651 (911)
T KOG2034|consen 573 SPKETVSAWMAQKDLDPNRLIPPILSYFSNWHSEYEENQAIRYLEFCIEVLGMTNPAIHNSLLHLYAKHERDD-LLLYLE 651 (911)
T ss_pred CcHHHHHHHHHccccCchhhhHHHHHHHhcCCccccHHHHHHHHHHHHHhccCcCHHHHHHHHHHhhcCCccc-hHHHHH
Confidence 1123344445555444333322222110000111223445555555444333458889999998888765533 333333
Q ss_pred HhhhCCCCCcHHHHHHHHHHHHHcCCHHH
Q 038190 431 KLPRYGPEPNVVTYTVMICGLCIEGGIEK 459 (531)
Q Consensus 431 ~~~~~g~~p~~~~~~~l~~~~~~~g~~~~ 459 (531)
.....+-. ...-....+..|.+.+.-..
T Consensus 652 ~~~~~~~~-~~YDl~~alRlc~~~~~~ra 679 (911)
T KOG2034|consen 652 IIKFMKSR-VHYDLDYALRLCLKFKKTRA 679 (911)
T ss_pred HHhhcccc-ceecHHHHHHHHHHhCccce
Confidence 32221111 22223345566666555433
No 441
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=44.06 E-value=3.5e+02 Score=27.21 Aligned_cols=168 Identities=14% Similarity=-0.018 Sum_probs=106.4
Q ss_pred cCChhHHHHHHHHHhhC----CC-------CCCHhhHHHHHHHHHhcCChhhhhcchHHHHHHHHHHHhCCCCCC-----
Q 038190 209 DGFVNKVRVLFLDMKGR----GI-------YPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELG----- 272 (531)
Q Consensus 209 ~~~~~~a~~~~~~m~~~----g~-------~p~~~~~~~li~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~----- 272 (531)
...+++|...|.-.... ++ +--..+.-.+...+...|+.+.+.+..+.++-.|+..........
T Consensus 251 s~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cR 330 (665)
T KOG2422|consen 251 SNSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCR 330 (665)
T ss_pred chHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhcccccccccccc
Confidence 34566777777655543 11 112334455667888999999999999999999998876551100
Q ss_pred --ccccCCHhhHHH---HHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH-hcCCHHHHHHHHHHHHhcC--
Q 038190 273 --VICHPDVLSYCS---IINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYC-LMGRIDDARKLFVSIESEG-- 344 (531)
Q Consensus 273 --~~~~~~~~~~~~---ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~-~~g~~~~a~~~~~~~~~~g-- 344 (531)
-...-+..-|-+ -|..+.+.|-+.-|+++.+.+......-|+.....+|+.|+ +..++.-.+++++.....+
T Consensus 331 L~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n~l 410 (665)
T KOG2422|consen 331 LPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENMNKL 410 (665)
T ss_pred CcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhccH
Confidence 001112222322 35667789999999999999988866667888888898876 5678888888888775432
Q ss_pred -CCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHH
Q 038190 345 -CIPDTSSYNTLINSYSKIEK---VEEALSLYGEMI 376 (531)
Q Consensus 345 -~~p~~~~~~~li~~~~~~~~---~~~a~~~~~~~~ 376 (531)
.-|+-.--.++...|..... -..|...+.+..
T Consensus 411 ~~~PN~~yS~AlA~f~l~~~~~~~rqsa~~~l~qAl 446 (665)
T KOG2422|consen 411 SQLPNFGYSLALARFFLRKNEEDDRQSALNALLQAL 446 (665)
T ss_pred hhcCCchHHHHHHHHHHhcCChhhHHHHHHHHHHHH
Confidence 23454433455555655444 334444444443
No 442
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=43.95 E-value=1.2e+02 Score=21.64 Aligned_cols=36 Identities=17% Similarity=0.004 Sum_probs=17.1
Q ss_pred ccCCcchHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChH
Q 038190 134 KMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFT 174 (531)
Q Consensus 134 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 174 (531)
..|+.+.|.++++.+. .|. ..|...+.++-..|.-+
T Consensus 48 ~~g~~~~ar~LL~~L~-rg~----~aF~~Fl~aLreT~~~~ 83 (88)
T cd08819 48 NHGNESGARELLKRIV-QKE----GWFSKFLQALRETEHHE 83 (88)
T ss_pred ccCcHHHHHHHHHHhc-cCC----cHHHHHHHHHHHcCchh
Confidence 3455555555555554 321 24444555555544433
No 443
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=43.61 E-value=2.5e+02 Score=25.44 Aligned_cols=160 Identities=16% Similarity=0.116 Sum_probs=94.0
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH-------Hh-------------------cCCCCC
Q 038190 295 VDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSI-------ES-------------------EGCIPD 348 (531)
Q Consensus 295 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~-------~~-------------------~g~~p~ 348 (531)
..+|+++|..+.++.- -..+-+.++.++-...+..+|...+... +. .++..|
T Consensus 149 s~KA~ELFayLv~hkg--k~v~~~~~ie~lwpe~D~kka~s~lhTtvyqlRKaLs~L~~ne~vts~d~~Ykld~~~~k~D 226 (361)
T COG3947 149 SRKALELFAYLVEHKG--KEVTSWEAIEALWPEKDEKKASSLLHTTVYQLRKALSRLNANEAVTSQDRKYKLDAGLPKYD 226 (361)
T ss_pred hhHHHHHHHHHHHhcC--CcccHhHHHHHHccccchhhHHHHHHHHHHHHHHHhchhccCceEEEcCCceEEecCCcccc
Confidence 3567788877776521 2233445555555555555555444332 11 123345
Q ss_pred HHHHHHHHHHHHhc-CCHHHHHHHHHHHHhCCCCCC------cccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCC
Q 038190 349 TSSYNTLINSYSKI-EKVEEALSLYGEMISMGVRPD------NSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWR 421 (531)
Q Consensus 349 ~~~~~~li~~~~~~-~~~~~a~~~~~~~~~~~~~~~------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 421 (531)
..-|...++....- -..+++.++...... +..|+ .+.-+.+..++ ..+++.....|..+|.
T Consensus 227 v~e~es~~rqi~~inltide~kelv~~ykg-dyl~e~~y~Waedererle~ly-----------~kllgkva~~yle~g~ 294 (361)
T COG3947 227 VQEYESLARQIEAINLTIDELKELVGQYKG-DYLPEADYPWAEDERERLEQLY-----------MKLLGKVARAYLEAGK 294 (361)
T ss_pred HHHHHHHhhhhhccccCHHHHHHHHHHhcC-CcCCccccccccchHHHHHHHH-----------HHHHHHHHHHHHHcCC
Confidence 55555555544322 334555555544322 22222 11111122221 2356677888999999
Q ss_pred hHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 038190 422 LRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEE 469 (531)
Q Consensus 422 ~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 469 (531)
+.+|.++.++.+... +.+...|..++..+...|+--.|.+-++.+.+
T Consensus 295 ~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyerya~ 341 (361)
T COG3947 295 PNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERYAE 341 (361)
T ss_pred hHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHHHH
Confidence 999999999998852 34677788999999999998888887776654
No 444
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=42.94 E-value=95 Score=20.34 Aligned_cols=50 Identities=22% Similarity=0.163 Sum_probs=34.1
Q ss_pred HHHcCCChHHHHHHHHHhhhCCCCCcHHHHHHHHHHHH-----HcCCHHHHHHHH
Q 038190 415 GLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLC-----IEGGIEKAYDLL 464 (531)
Q Consensus 415 ~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~-----~~g~~~~A~~~~ 464 (531)
.+...|++=+|-++++.+=.....+....+..+|...+ +.|+...|..++
T Consensus 8 ~l~n~g~f~EaHEvlE~~W~~~~~~~~~~lqglIq~A~a~~h~~~gn~~gA~~l~ 62 (62)
T PF03745_consen 8 ELFNAGDFFEAHEVLEELWKAAPGPERDFLQGLIQLAVALYHLRRGNPRGARRLL 62 (62)
T ss_dssp HHHHTT-HHHHHHHHHHHCCCT-CCHHHHHHHHHHHHHHHHHHHCTSHHHHHHHH
T ss_pred HHHcCCCHHHhHHHHHHHHHHCCcchHHHHHHHHHHHHHHHHHHhCCHHHHHHhC
Confidence 35678999999999999864322346667777776543 678888876654
No 445
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=42.93 E-value=2.5e+02 Score=25.13 Aligned_cols=25 Identities=20% Similarity=0.198 Sum_probs=16.7
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHH
Q 038190 313 DVVVYSSLIDGYCLMGRIDDARKLF 337 (531)
Q Consensus 313 ~~~~~~~ll~~~~~~g~~~~a~~~~ 337 (531)
++.....+...|.+.|++.+|+..|
T Consensus 89 dp~LH~~~a~~~~~e~~~~~A~~Hf 113 (260)
T PF04190_consen 89 DPELHHLLAEKLWKEGNYYEAERHF 113 (260)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred CHHHHHHHHHHHHhhccHHHHHHHH
Confidence 5666677777778888887777655
No 446
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=42.90 E-value=2.3e+02 Score=24.76 Aligned_cols=104 Identities=13% Similarity=0.104 Sum_probs=63.0
Q ss_pred ccCCcchHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHc-CC-------CCCCCCcHHhHHHHHHH
Q 038190 134 KMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAF-DC-------RPNVIPNVICYASIIDG 205 (531)
Q Consensus 134 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-~~-------~~~~~~~~~~~~~l~~~ 205 (531)
+..+.+--.++.+-....++.-+.....+++ +...||..+|+..++.-... |. ..-..|.......++..
T Consensus 171 klsd~qiL~Rl~~v~k~Ekv~yt~dgLeaii--fta~GDMRQalNnLQst~~g~g~Vn~enVfKv~d~PhP~~v~~ml~~ 248 (333)
T KOG0991|consen 171 KLSDQQILKRLLEVAKAEKVNYTDDGLEAII--FTAQGDMRQALNNLQSTVNGFGLVNQENVFKVCDEPHPLLVKKMLQA 248 (333)
T ss_pred ccCHHHHHHHHHHHHHHhCCCCCcchHHHhh--hhccchHHHHHHHHHHHhccccccchhhhhhccCCCChHHHHHHHHH
Confidence 3333333334444444555555555555444 56789999988888766542 10 00012566666677765
Q ss_pred HHhcCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHH
Q 038190 206 LCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVY 241 (531)
Q Consensus 206 ~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~ 241 (531)
|. .+++++|.+++.++-+.|+.|... .+.+.+.+
T Consensus 249 ~~-~~~~~~A~~il~~lw~lgysp~Di-i~~~FRv~ 282 (333)
T KOG0991|consen 249 CL-KRNIDEALKILAELWKLGYSPEDI-ITTLFRVV 282 (333)
T ss_pred HH-hccHHHHHHHHHHHHHcCCCHHHH-HHHHHHHH
Confidence 54 578999999999999999987543 33444443
No 447
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=42.59 E-value=47 Score=29.94 Aligned_cols=37 Identities=19% Similarity=0.214 Sum_probs=27.9
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHhhH
Q 038190 198 CYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVY 234 (531)
Q Consensus 198 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~ 234 (531)
-|+..|....+.||+++|+.++++....|+.--..+|
T Consensus 259 Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tF 295 (303)
T PRK10564 259 YFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTF 295 (303)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHH
Confidence 4668888888888888888888888888766444444
No 448
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=42.40 E-value=71 Score=20.94 Aligned_cols=47 Identities=13% Similarity=-0.099 Sum_probs=23.2
Q ss_pred HccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHH-----ccCCcchHHHH
Q 038190 98 AGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFC-----KMIGVSDAFVA 144 (531)
Q Consensus 98 ~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~-----~~g~~~~a~~~ 144 (531)
...|++-+|.++++.+=.....+....+..+|.... +.|+...|..+
T Consensus 10 ~n~g~f~EaHEvlE~~W~~~~~~~~~~lqglIq~A~a~~h~~~gn~~gA~~l 61 (62)
T PF03745_consen 10 FNAGDFFEAHEVLEELWKAAPGPERDFLQGLIQLAVALYHLRRGNPRGARRL 61 (62)
T ss_dssp HHTT-HHHHHHHHHHHCCCT-CCHHHHHHHHHHHHHHHHHHHCTSHHHHHHH
T ss_pred HcCCCHHHhHHHHHHHHHHCCcchHHHHHHHHHHHHHHHHHHhCCHHHHHHh
Confidence 345666666666666643221234445555554432 44666555544
No 449
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=42.26 E-value=1.6e+02 Score=22.74 Aligned_cols=43 Identities=23% Similarity=0.153 Sum_probs=35.5
Q ss_pred HHHHHHHHhhhCCCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 038190 424 SAWELFKKLPRYGPEP-NVVTYTVMICGLCIEGGIEKAYDLLPD 466 (531)
Q Consensus 424 ~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~ 466 (531)
.+.++|..|...|+-- -+..|......+...|++++|.++|+.
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 9999999999876654 466788888899999999999998864
No 450
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=41.82 E-value=2.3e+02 Score=24.51 Aligned_cols=65 Identities=23% Similarity=0.194 Sum_probs=41.4
Q ss_pred CCHHHHHHHHHHHHcCCChHHHHHHHHHhhhCCCCC---cHHHHH--HHHHHHHHcCCHHHHHHHHHHHHHH
Q 038190 404 LDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEP---NVVTYT--VMICGLCIEGGIEKAYDLLPDMEEK 470 (531)
Q Consensus 404 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p---~~~~~~--~l~~~~~~~g~~~~A~~~~~~~~~~ 470 (531)
+...-+|.|+--|.-...+.+|-+.|..-. |+.| +..+++ .-|......|+.++|++..++....
T Consensus 24 ~~~~d~n~LVmnylv~eg~~EaA~~Fa~e~--~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~Pe 93 (228)
T KOG2659|consen 24 VMREDLNRLVMNYLVHEGYVEAAEKFAKES--GIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLNPE 93 (228)
T ss_pred cchhhHHHHHHHHHHhccHHHHHHHhcccc--CCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhChH
Confidence 345566677766666666666666665433 3443 444443 4566778999999998888765443
No 451
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=41.31 E-value=2.2e+02 Score=29.06 Aligned_cols=78 Identities=13% Similarity=0.196 Sum_probs=52.4
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCCCCCCcHHhHHHHHHHHHhcCChhHHHHHHHH----HhhCCCCCCHhhHHHH
Q 038190 162 CLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLD----MKGRGIYPDAFVYNSL 237 (531)
Q Consensus 162 ~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~----m~~~g~~p~~~~~~~l 237 (531)
+|+.+|...|++..+.++++.+.... .+...-...+|..++.+.+.|.++-. +++.. +....+.-|..||..+
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~--~~~k~~l~~~nlyi~~~~q~~sf~l~-~~~~~~~~~lq~a~ln~d~~t~all 109 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHN--KGDKILLPMINLYIREIIQRGSFELT-DVLSNAKELLQQARLNGDSLTYALL 109 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCC--cCCeeehhHHHHHHHHHHhcCCccHH-HHHHHHHHHHHHhhcCCcchHHHHH
Confidence 78999999999999999999988752 21112344678888888888876532 23322 3334566677777777
Q ss_pred HHHHH
Q 038190 238 IRVYC 242 (531)
Q Consensus 238 i~~~~ 242 (531)
+.+-.
T Consensus 110 ~~~sl 114 (1117)
T COG5108 110 CQASL 114 (1117)
T ss_pred HHhhc
Confidence 66544
No 452
>PRK13342 recombination factor protein RarA; Reviewed
Probab=41.15 E-value=3.4e+02 Score=26.28 Aligned_cols=98 Identities=14% Similarity=0.001 Sum_probs=48.4
Q ss_pred HHHHHHHHHh---cCChHHHHHHHHHHHHcCCCCCCCCcHHhHHHHHHHHHhcCC-----hhHHHHHHHHHhhCCCCCCH
Q 038190 160 LGCLIRGLCM---QGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGF-----VNKVRVLFLDMKGRGIYPDA 231 (531)
Q Consensus 160 ~~~li~~~~~---~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-----~~~a~~~~~~m~~~g~~p~~ 231 (531)
+..++.++.+ ..+++.|+..+..|...|.+| ....-..++.++-..|. ..-|...++.....|++--.
T Consensus 230 ~~~~isa~~ks~rgsd~~aal~~l~~~l~~G~d~----~~i~rrl~~~a~edig~a~~~~~~~~~~~~~~~~~~g~pe~~ 305 (413)
T PRK13342 230 HYDLISALHKSIRGSDPDAALYYLARMLEAGEDP----LFIARRLVIIASEDIGLADPNALQVAVAAADAVERIGMPEGR 305 (413)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCH----HHHHHHHHHHHHHhhcccCHHHHHHHHHHHHHHHHhCCcHHH
Confidence 3344555544 478888888888888877665 33344444444434332 22334444444555554333
Q ss_pred hhHHHHHHHHHhcCChhhhhcchHHHHHHH
Q 038190 232 FVYNSLIRVYCCAVNWEDAKGNTSAALELH 261 (531)
Q Consensus 232 ~~~~~li~~~~~~~~~~~a~~~~~~a~~~~ 261 (531)
......+--++.+-+-..+...+..|++..
T Consensus 306 ~~l~~~~~~l~~~pksn~~~~a~~~a~~~~ 335 (413)
T PRK13342 306 IALAQAVIYLALAPKSNAAYTAINAALADV 335 (413)
T ss_pred HHHHHHHHHHHcCCCccHHHHHHHHHHHHH
Confidence 333333333333444333444444444433
No 453
>PRK09462 fur ferric uptake regulator; Provisional
Probab=40.75 E-value=1.6e+02 Score=23.54 Aligned_cols=61 Identities=10% Similarity=0.091 Sum_probs=38.0
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC
Q 038190 303 LDMKSRGIIPDVVVYSSLIDGYCLM-GRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEK 364 (531)
Q Consensus 303 ~~~~~~~~~~~~~~~~~ll~~~~~~-g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~~~ 364 (531)
+.+.+.|++.+..- ..++..+... +..-.|.++++.+.+.+...+..|....+..+...|-
T Consensus 6 ~~l~~~glr~T~qR-~~Il~~l~~~~~~h~sa~eI~~~l~~~~~~i~~aTVYR~L~~L~e~Gl 67 (148)
T PRK09462 6 TALKKAGLKVTLPR-LKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGI 67 (148)
T ss_pred HHHHHcCCCCCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCC
Confidence 34556677765443 3344444443 4677889999998888766666665555555555554
No 454
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=40.20 E-value=3.4e+02 Score=25.96 Aligned_cols=50 Identities=16% Similarity=0.060 Sum_probs=22.2
Q ss_pred ccCCHHHHHHHHHHHHhCCCCCCHh--hHHHHHHHHH--ccCCcchHHHHHHHHH
Q 038190 99 GKKYYVNFICLSERLNTIGLLPDFV--SLNILMNCFC--KMIGVSDAFVALGRIL 149 (531)
Q Consensus 99 ~~~~~~~a~~~~~~m~~~g~~~~~~--~~~~li~~~~--~~g~~~~a~~~~~~~~ 149 (531)
+.+++..|.++++.+.+. ++++.. .+..+..+|. ..-++.+|.+.++...
T Consensus 143 n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~ 196 (379)
T PF09670_consen 143 NRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLL 196 (379)
T ss_pred hcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 455555555555555554 333332 2233333332 2334445555554443
No 455
>PF11123 DNA_Packaging_2: DNA packaging protein ; InterPro: IPR024345 This entry represents Gp18 (gene 18 product), also known as DNA maturase A, from T7-like bacteriophages. In Bacteriophage T3, this protein is required for DNA packaging and functions in a complex with Gp19 [].
Probab=40.08 E-value=89 Score=21.18 Aligned_cols=33 Identities=9% Similarity=-0.010 Sum_probs=24.9
Q ss_pred CHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHcc
Q 038190 67 ELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGK 100 (531)
Q Consensus 67 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 100 (531)
+.+.|.+++..+.... +.+.+.||++...+.+.
T Consensus 12 DtEmA~~mL~DLr~de-kRsPQLYnAI~k~L~RH 44 (82)
T PF11123_consen 12 DTEMAQQMLADLRDDE-KRSPQLYNAIGKLLDRH 44 (82)
T ss_pred HHHHHHHHHHHhcchh-hcChHHHHHHHHHHHHc
Confidence 6788888888886543 34788999988877654
No 456
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=39.70 E-value=1.7e+02 Score=24.01 Aligned_cols=61 Identities=8% Similarity=-0.070 Sum_probs=39.8
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCH
Q 038190 304 DMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKV 365 (531)
Q Consensus 304 ~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~~~~ 365 (531)
.+.+.|+..+..-. .++..+...++.-.|.++++.+.+.+..++..|....+..+...|-+
T Consensus 16 ~L~~~GlR~T~qR~-~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Glv 76 (169)
T PRK11639 16 LCAQRNVRLTPQRL-EVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGFV 76 (169)
T ss_pred HHHHcCCCCCHHHH-HHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCCE
Confidence 34566777665443 44555555566778899999998888776766655556666655543
No 457
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=39.32 E-value=3.7e+02 Score=26.08 Aligned_cols=98 Identities=13% Similarity=0.043 Sum_probs=59.5
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH----HhhHHHHH-HHHHH
Q 038190 409 FNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK----IRECLKAI-ELLHK 483 (531)
Q Consensus 409 ~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----i~~~~~a~-~~~~~ 483 (531)
...|+.-|...|++.+|...++++--- +--....+.+++.+.-+.|+-..-+.+++..... +.+..++. ++++.
T Consensus 512 I~~LLeEY~~~GdisEA~~CikeLgmP-fFhHEvVkkAlVm~mEkk~d~t~~ldLLk~cf~sglIT~nQMtkGf~RV~ds 590 (645)
T KOG0403|consen 512 IDMLLEEYELSGDISEACHCIKELGMP-FFHHEVVKKALVMVMEKKGDSTMILDLLKECFKSGLITTNQMTKGFERVYDS 590 (645)
T ss_pred HHHHHHHHHhccchHHHHHHHHHhCCC-cchHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCceeHHHhhhhhhhhhcc
Confidence 456788899999999999998876521 1124667889999999999877666666665444 11111111 11122
Q ss_pred HHH--cCCCCCHHHHHHHHHHHhccC
Q 038190 484 MAK--RYVKPDEITVSILEELLNKDE 507 (531)
Q Consensus 484 ~~~--~~~~~~~~~~~~l~~~~~~~g 507 (531)
+-+ .+++.....++.++.-+...|
T Consensus 591 l~DlsLDvPna~ekf~~~Ve~~~~~G 616 (645)
T KOG0403|consen 591 LPDLSLDVPNAYEKFERYVEECFQNG 616 (645)
T ss_pred CcccccCCCcHHHHHHHHHHHHHHcC
Confidence 211 233222356777777777776
No 458
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=39.11 E-value=1.2e+02 Score=26.77 Aligned_cols=58 Identities=10% Similarity=0.023 Sum_probs=33.3
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHH----cCCCCCCCCcHHhHHHHHHHHHhcCChhHHHHHHHHH
Q 038190 162 CLIRGLCMQGKFTEASGLFTKFVA----FDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDM 222 (531)
Q Consensus 162 ~li~~~~~~g~~~~a~~~~~~~~~----~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m 222 (531)
.+..-|...|++++|.++|+.+.. .|+.. ....+...+..++.+.|+.+....+--++
T Consensus 183 ~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~---l~~~~l~~l~~Ca~~~~~~~~~l~~~leL 244 (247)
T PF11817_consen 183 EMAEEYFRLGDYDKALKLLEPAASSYRREGWWS---LLTEVLWRLLECAKRLGDVEDYLTTSLEL 244 (247)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHH---HHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 355566666666666666666532 22222 35556666666666666666666554444
No 459
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=38.90 E-value=3.2e+02 Score=25.25 Aligned_cols=39 Identities=21% Similarity=0.128 Sum_probs=20.7
Q ss_pred hHHHHHHHHhcCCCHHHHHHHHHHHHh----CCCCCCHHHHHH
Q 038190 281 SYCSIINSLCKDVLVDKAKELFLDMKS----RGIIPDVVVYSS 319 (531)
Q Consensus 281 ~~~~ll~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~~~~~ 319 (531)
.+-.....||+.|+-+.|++.++...+ .|.+.|+..+.+
T Consensus 106 a~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~i 148 (393)
T KOG0687|consen 106 AMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKI 148 (393)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHH
Confidence 344455566666666666655554332 255555544443
No 460
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=38.52 E-value=96 Score=21.33 Aligned_cols=12 Identities=33% Similarity=0.576 Sum_probs=6.9
Q ss_pred cCCHHHHHHHHH
Q 038190 454 EGGIEKAYDLLP 465 (531)
Q Consensus 454 ~g~~~~A~~~~~ 465 (531)
.|++++|+++|.
T Consensus 19 ~gny~eA~~lY~ 30 (75)
T cd02680 19 KGNAEEAIELYT 30 (75)
T ss_pred hhhHHHHHHHHH
Confidence 455666665554
No 461
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=38.38 E-value=1.2e+02 Score=29.27 Aligned_cols=53 Identities=13% Similarity=0.129 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHcCCCCCHH--HHHHHHHHHhccCChhHHHhhHHHhhhcchhhh
Q 038190 475 LKAIELLHKMAKRYVKPDEI--TVSILEELLNKDENCHECMNLLPSFLSRNQEES 527 (531)
Q Consensus 475 ~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 527 (531)
++.+++--.+....++|... ++..-+....+.+++.-|-.+.+++...++.++
T Consensus 280 kR~lELAAYFThc~LQp~H~~LaLr~AM~~~~K~KNf~tAa~FArRLLel~p~~~ 334 (422)
T PF06957_consen 280 KRNLELAAYFTHCKLQPSHLILALRSAMSQAFKLKNFITAASFARRLLELNPSPE 334 (422)
T ss_dssp HHHHHHHHHHCCS---HHHHHHHHHHHHHHCCCTTBHHHHHHHHHHHHCT--SCH
T ss_pred HHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCHH
Confidence 34445555555556666653 455566777788888888888888777665543
No 462
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=37.82 E-value=60 Score=21.55 Aligned_cols=49 Identities=20% Similarity=0.130 Sum_probs=29.9
Q ss_pred CCHhhHHHHHHHHHccCCcchHHHHHHHHHHCCCCCChhhHHHHHHHHHh
Q 038190 120 PDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCM 169 (531)
Q Consensus 120 ~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 169 (531)
|....++.++..+++-.-.++++..++++.+.|. .+..+|.--++.+++
T Consensus 6 ~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g~-I~~d~~lK~vR~LaR 54 (65)
T PF09454_consen 6 AEDPLSNQLYELVAEDHAIEDTIYYLDRALQRGS-IDLDTFLKQVRSLAR 54 (65)
T ss_dssp -SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-S-HHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHH
Confidence 4455666777777776667777777777777663 355555555555544
No 463
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=37.50 E-value=91 Score=29.82 Aligned_cols=66 Identities=12% Similarity=0.048 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHhhh--CC----CC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 038190 406 LTVFNCLVDGLCKSWRLRSAWELFKKLPR--YG----PE-PNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKI 471 (531)
Q Consensus 406 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~g----~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~i 471 (531)
-.+...|++.++-.||+..|+++++.+.= .+ +. -...+|-.+.-+|...+++.+|++.|..+.--+
T Consensus 122 YFSligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~yi 194 (404)
T PF10255_consen 122 YFSLIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILLYI 194 (404)
T ss_pred HHHHHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34667889999999999999999987642 11 11 234567788889999999999999999876653
No 464
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=37.39 E-value=4.1e+02 Score=29.71 Aligned_cols=162 Identities=13% Similarity=0.006 Sum_probs=93.2
Q ss_pred HccCCcchHHH------HHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHH-----cCCCCCCCCcHHhHHH
Q 038190 133 CKMIGVSDAFV------ALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVA-----FDCRPNVIPNVICYAS 201 (531)
Q Consensus 133 ~~~g~~~~a~~------~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~-----~~~~~~~~~~~~~~~~ 201 (531)
...|.+.++.+ ++......-.+.....|..|...+-+.|+.++|+..-....- .|.++ ..+...|..
T Consensus 943 ~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds--~~t~~~y~n 1020 (1236)
T KOG1839|consen 943 LLEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDS--PNTKLAYGN 1020 (1236)
T ss_pred hcccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCC--HHHHHHhhH
Confidence 34455555555 555333322234556788888889999999999876544321 11122 124456666
Q ss_pred HHHHHHhcCChhHHHHHHHHHhhC-----C-CCCCH-hhHHHHHHHHHhcCChhhhhcchHHHHHHHHHHHhCCCCCCcc
Q 038190 202 IIDGLCKDGFVNKVRVLFLDMKGR-----G-IYPDA-FVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVI 274 (531)
Q Consensus 202 l~~~~~~~~~~~~a~~~~~~m~~~-----g-~~p~~-~~~~~li~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~ 274 (531)
+...+...+....|...+.+.... | ..|.. .+++.+-..+...++.+.|....+.|...-+.+....
T Consensus 1021 lal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~g~~------ 1094 (1236)
T KOG1839|consen 1021 LALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKKVLGPK------ 1094 (1236)
T ss_pred HHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcCcc------
Confidence 666666677888888777766542 2 13333 3333333333444777778887777766444443322
Q ss_pred ccCCHhhHHHHHHHHhcCCCHHHHHHHH
Q 038190 275 CHPDVLSYCSIINSLCKDVLVDKAKELF 302 (531)
Q Consensus 275 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~ 302 (531)
...+..++..+.+.+...+++..|....
T Consensus 1095 ~l~~~~~~~~~a~l~~s~~dfr~al~~e 1122 (1236)
T KOG1839|consen 1095 ELETALSYHALARLFESMKDFRNALEHE 1122 (1236)
T ss_pred chhhhhHHHHHHHHHhhhHHHHHHHHHH
Confidence 3345666777777777677666655433
No 465
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=36.33 E-value=79 Score=23.77 Aligned_cols=46 Identities=15% Similarity=0.038 Sum_probs=24.7
Q ss_pred HHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCc
Q 038190 93 LLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGV 138 (531)
Q Consensus 93 li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~ 138 (531)
++..+...+..-.|.++++.+.+.+...+..|....++.+.+.|-.
T Consensus 6 Il~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gli 51 (116)
T cd07153 6 ILEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGLV 51 (116)
T ss_pred HHHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCE
Confidence 3444444445555666666666655455555555555555555543
No 466
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=36.16 E-value=2.7e+02 Score=23.58 Aligned_cols=128 Identities=13% Similarity=0.009 Sum_probs=79.9
Q ss_pred hhHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHH--HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHH---
Q 038190 280 LSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVY--SSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNT--- 354 (531)
Q Consensus 280 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~--- 354 (531)
..|..++.... .+.. +.....+.+....-.....++ -.+...+..+|++++|...++..... |....+..
T Consensus 55 ~~Y~~~i~~~~-ak~~-~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~---t~De~lk~l~~ 129 (207)
T COG2976 55 AQYQNAIKAVQ-AKKP-KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQ---TKDENLKALAA 129 (207)
T ss_pred HHHHHHHHHHh-cCCc-hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHcc---chhHHHHHHHH
Confidence 34555555543 2333 444445555554211111122 22345677889999999999887754 23333333
Q ss_pred --HHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHh
Q 038190 355 --LINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKL 432 (531)
Q Consensus 355 --li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 432 (531)
|.+.....|.+++|+..++...+.+.. ......-.+.+...|+-++|+.-|+..
T Consensus 130 lRLArvq~q~~k~D~AL~~L~t~~~~~w~------------------------~~~~elrGDill~kg~k~~Ar~ay~kA 185 (207)
T COG2976 130 LRLARVQLQQKKADAALKTLDTIKEESWA------------------------AIVAELRGDILLAKGDKQEARAAYEKA 185 (207)
T ss_pred HHHHHHHHHhhhHHHHHHHHhccccccHH------------------------HHHHHHhhhHHHHcCchHHHHHHHHHH
Confidence 445667889999999988877664322 233455678889999999999999999
Q ss_pred hhCC
Q 038190 433 PRYG 436 (531)
Q Consensus 433 ~~~g 436 (531)
++.+
T Consensus 186 l~~~ 189 (207)
T COG2976 186 LESD 189 (207)
T ss_pred HHcc
Confidence 8864
No 467
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=35.00 E-value=40 Score=30.89 Aligned_cols=96 Identities=7% Similarity=-0.189 Sum_probs=69.0
Q ss_pred ccCCcchHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCCCcHHhHHHHHHHHHhcCChh
Q 038190 134 KMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVN 213 (531)
Q Consensus 134 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 213 (531)
..|.++.|++.|...+... ++....|..-.+++.+.+.+..|++=++..... .++ +..-|-.=-.+-...|+|+
T Consensus 126 n~G~~~~ai~~~t~ai~ln-p~~a~l~~kr~sv~lkl~kp~~airD~d~A~ei--n~D---sa~~ykfrg~A~rllg~~e 199 (377)
T KOG1308|consen 126 NDGEFDTAIELFTSAIELN-PPLAILYAKRASVFLKLKKPNAAIRDCDFAIEI--NPD---SAKGYKFRGYAERLLGNWE 199 (377)
T ss_pred cCcchhhhhcccccccccC-CchhhhcccccceeeeccCCchhhhhhhhhhcc--Ccc---cccccchhhHHHHHhhchH
Confidence 4477888888888888775 346667777778888888888888877777664 332 2334555555666778888
Q ss_pred HHHHHHHHHhhCCCCCCHhhHH
Q 038190 214 KVRVLFLDMKGRGIYPDAFVYN 235 (531)
Q Consensus 214 ~a~~~~~~m~~~g~~p~~~~~~ 235 (531)
+|...|....+.++.+....|.
T Consensus 200 ~aa~dl~~a~kld~dE~~~a~l 221 (377)
T KOG1308|consen 200 EAAHDLALACKLDYDEANSATL 221 (377)
T ss_pred HHHHHHHHHHhccccHHHHHHH
Confidence 8888888888888877765543
No 468
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=34.35 E-value=1.9e+02 Score=21.32 Aligned_cols=52 Identities=17% Similarity=0.065 Sum_probs=35.6
Q ss_pred HHHHHHHcCCChHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 038190 411 CLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDME 468 (531)
Q Consensus 411 ~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 468 (531)
+-+..+...|+|++|..+.+.+ ..||...|.+|- -.+.|-.+++..-+..+.
T Consensus 44 IRlsSLmNrG~Yq~Al~l~~~~----~~pdlepw~ALc--e~rlGl~s~l~~rl~rla 95 (115)
T TIGR02508 44 IRLSSLMNRGDYQSALQLGNKL----CYPDLEPWLALC--EWRLGLGSALESRLNRLA 95 (115)
T ss_pred HHHHHHHccchHHHHHHhcCCC----CCchHHHHHHHH--HHhhccHHHHHHHHHHHH
Confidence 4455678899999999988776 378888887664 346676665554444433
No 469
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=34.28 E-value=2e+02 Score=23.59 Aligned_cols=44 Identities=7% Similarity=-0.069 Sum_probs=20.5
Q ss_pred HHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccC
Q 038190 93 LLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMI 136 (531)
Q Consensus 93 li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g 136 (531)
++..+....+.-.|.++++++.+.+...+..|....+..+.+.|
T Consensus 31 IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~G 74 (169)
T PRK11639 31 VLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQG 74 (169)
T ss_pred HHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCC
Confidence 33333333444455555555555544444444444444444444
No 470
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=34.00 E-value=2.5e+02 Score=27.00 Aligned_cols=61 Identities=20% Similarity=0.348 Sum_probs=45.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHh--cC-----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 038190 316 VYSSLIDGYCLMGRIDDARKLFVSIES--EG-----CIPDTSSYNTLINSYSKIEKVEEALSLYGEMI 376 (531)
Q Consensus 316 ~~~~ll~~~~~~g~~~~a~~~~~~~~~--~g-----~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 376 (531)
+...|++.++-.||+..|.++++.+.- .+ ......+|-.+.-+|.-.+++.+|.+.|....
T Consensus 124 SligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 124 SLIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQIL 191 (404)
T ss_pred HHHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 446678888889999999999887532 11 11234566777788889999999999988763
No 471
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=33.90 E-value=3.4e+02 Score=25.32 Aligned_cols=65 Identities=11% Similarity=0.129 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHcCCCCCCCCcHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHH
Q 038190 175 EASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVY 241 (531)
Q Consensus 175 ~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~ 241 (531)
+++.++..++.. -|+...-+.-|-.+++.....|.++.++.+|++....|-.|-...-..+++.+
T Consensus 121 ei~~~L~~li~~--IP~A~K~aKYWIC~Arl~~~~~~~e~vi~iyEeAi~agAqPieElR~~l~diL 185 (353)
T PF15297_consen 121 EILATLSDLIKN--IPDAKKLAKYWICLARLEPRTGPIEDVIAIYEEAILAGAQPIEELRHVLVDIL 185 (353)
T ss_pred HHHHHHHHHHhc--CchHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHH
Confidence 444455544443 22222223445666666666666666666666666666666555444444443
No 472
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=33.77 E-value=1.6e+02 Score=20.28 Aligned_cols=35 Identities=26% Similarity=0.107 Sum_probs=27.4
Q ss_pred HHHHHHHHHhcCChhhhhcchHHHHHHHHHHHhCC
Q 038190 234 YNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGN 268 (531)
Q Consensus 234 ~~~li~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~ 268 (531)
|....--|-+.|++.+|+..|.+|++++.++....
T Consensus 9 ~a~~AVe~D~~gr~~eAi~~Y~~aIe~L~q~~~~~ 43 (75)
T cd02682 9 YAINAVKAEKEGNAEDAITNYKKAIEVLSQIVKNY 43 (75)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHhC
Confidence 33334456788999999999999999999988864
No 473
>PHA02875 ankyrin repeat protein; Provisional
Probab=33.48 E-value=4.5e+02 Score=25.35 Aligned_cols=136 Identities=15% Similarity=0.031 Sum_probs=65.9
Q ss_pred CCHHHHHHHHHHHHHcCCCCChhh--HHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHh--hHHHHHHHHHccCCcchH
Q 038190 66 VELNDALCFFNYMIHMQPTPFMPS--FNSLLGALAGKKYYVNFICLSERLNTIGLLPDFV--SLNILMNCFCKMIGVSDA 141 (531)
Q Consensus 66 g~~~~A~~~~~~~~~~~~~~~~~~--~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~--~~~~li~~~~~~g~~~~a 141 (531)
|+.+-+..++ +.|..|+... ....+...+..|+.+ +.+.+.+.|..|+.. .....+...+..|+.+.+
T Consensus 13 g~~~iv~~Ll----~~g~~~n~~~~~g~tpL~~A~~~~~~~----~v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~~~~v 84 (413)
T PHA02875 13 GELDIARRLL----DIGINPNFEIYDGISPIKLAMKFRDSE----AIKLLMKHGAIPDVKYPDIESELHDAVEEGDVKAV 84 (413)
T ss_pred CCHHHHHHHH----HCCCCCCccCCCCCCHHHHHHHcCCHH----HHHHHHhCCCCccccCCCcccHHHHHHHCCCHHHH
Confidence 3555444444 4555554432 234455556677765 444555666555432 112334455567887776
Q ss_pred HHHHHHHHHCCCCCChh---hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCCCcHHhHHHHHHHHHhcCChhHHHHH
Q 038190 142 FVALGRILRKVFSPDVV---TLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVL 218 (531)
Q Consensus 142 ~~~~~~~~~~~~~~~~~---~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 218 (531)
..+++ .|...+.. .-.+.+...+..|+.+ +++.+.+.|..++.. +..-. +.+...+..|+.+-+..+
T Consensus 85 ~~Ll~----~~~~~~~~~~~~g~tpL~~A~~~~~~~----iv~~Ll~~gad~~~~-~~~g~-tpLh~A~~~~~~~~v~~L 154 (413)
T PHA02875 85 EELLD----LGKFADDVFYKDGMTPLHLATILKKLD----IMKLLIARGADPDIP-NTDKF-SPLHLAVMMGDIKGIELL 154 (413)
T ss_pred HHHHH----cCCcccccccCCCCCHHHHHHHhCCHH----HHHHHHhCCCCCCCC-CCCCC-CHHHHHHHcCCHHHHHHH
Confidence 65554 33221110 1123344455667654 455555666555432 22222 334455567776654444
Q ss_pred H
Q 038190 219 F 219 (531)
Q Consensus 219 ~ 219 (531)
+
T Consensus 155 l 155 (413)
T PHA02875 155 I 155 (413)
T ss_pred H
Confidence 4
No 474
>PF09868 DUF2095: Uncharacterized protein conserved in archaea (DUF2095); InterPro: IPR018662 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=33.35 E-value=1.6e+02 Score=22.07 Aligned_cols=31 Identities=13% Similarity=-0.056 Sum_probs=17.5
Q ss_pred HHHHHHccCCHHHHHHHHHHHHhCCCCCCHhh
Q 038190 93 LLGALAGKKYYVNFICLSERLNTIGLLPDFVS 124 (531)
Q Consensus 93 li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~ 124 (531)
++..+.++...++|+++.+.|.+.| ..+...
T Consensus 67 ViD~lrRC~T~EEALEVInylek~G-EIt~e~ 97 (128)
T PF09868_consen 67 VIDYLRRCKTDEEALEVINYLEKRG-EITPEE 97 (128)
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHhC-CCCHHH
Confidence 3444555566666666666666666 444433
No 475
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=32.91 E-value=1.7e+02 Score=21.35 Aligned_cols=41 Identities=10% Similarity=0.018 Sum_probs=29.3
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHhccCChhHHHhhHHH
Q 038190 478 IELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLLPS 518 (531)
Q Consensus 478 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 518 (531)
.+.+++....+...-+.....|.-.|.+.|+.+.|.+-|+.
T Consensus 57 e~~~ek~~ak~~~vpPG~HAhLGlLys~~G~~e~a~~eFet 97 (121)
T COG4259 57 EKYLEKIGAKNGAVPPGYHAHLGLLYSNSGKDEQAVREFET 97 (121)
T ss_pred HHHHHHHhhcCCCCCCcHHHHHHHHHhhcCChHHHHHHHHH
Confidence 34555565444443444566899999999999999988876
No 476
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=32.83 E-value=7e+02 Score=27.39 Aligned_cols=332 Identities=8% Similarity=0.004 Sum_probs=153.1
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHH-------HHccCC---cchHHHHHHHHHHCCCCCChhh
Q 038190 90 FNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNC-------FCKMIG---VSDAFVALGRILRKVFSPDVVT 159 (531)
Q Consensus 90 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~-------~~~~g~---~~~a~~~~~~~~~~~~~~~~~~ 159 (531)
+-++-.++...+.+++|+..|++.... ++-....|.+..++ ....|+ +++|+.-|+.+... .--+--
T Consensus 478 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 554 (932)
T PRK13184 478 CLAVPDAFLAEKLYDQALIFYRRIRES-FPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLHGG--VGAPLE 554 (932)
T ss_pred cccCcHHHHhhHHHHHHHHHHHHHhhc-CCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhcCC--CCCchH
Confidence 444556777788888888888888654 22223334333322 223333 55566666655432 112223
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcC-CCCCCC----------------CcHHhHHHHHHHHHh---cCChhHHHHHH
Q 038190 160 LGCLIRGLCMQGKFTEASGLFTKFVAFD-CRPNVI----------------PNVICYASIIDGLCK---DGFVNKVRVLF 219 (531)
Q Consensus 160 ~~~li~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~----------------~~~~~~~~l~~~~~~---~~~~~~a~~~~ 219 (531)
|-.-.-+|-+.|++++-++.+.-..+.. ..|... ....+|.-++-+... .-...+-.++|
T Consensus 555 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 634 (932)
T PRK13184 555 YLGKALVYQRLGEYNEEIKSLLLALKRYSQHPEISRLRDHLVYRLHESLYKHRREALVFMLLALWIAPEKISSREEEKFL 634 (932)
T ss_pred HHhHHHHHHHhhhHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccccchHHHHHH
Confidence 3333445777788877666665554432 122111 111222222222221 11223334555
Q ss_pred HHHhhC-------CCCCCHhh-----HHHHHHHHHhcCChhhhhcchHHHHHHHHHHHhCCCCCCccccCCHhhHHHHHH
Q 038190 220 LDMKGR-------GIYPDAFV-----YNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIIN 287 (531)
Q Consensus 220 ~~m~~~-------g~~p~~~~-----~~~li~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~ 287 (531)
+.+..+ .+.+.+.+ +..++.-+. |..---.+ +|+..... ++..+...+.-
T Consensus 635 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~-------~~~~~~~~---------~~~~~~~~~~~ 696 (932)
T PRK13184 635 EILYHKQQATLFCQLDKTPLQFRSSKMELFLSFWS--GFTPFLPE-------LFQRAWDL---------RDYRALADIFY 696 (932)
T ss_pred HHHHhhccCCceeeccCchhhhhhhhHHHHHHHHh--cCchhhHH-------HHHHHhhc---------ccHHHHHHHHH
Confidence 555443 11122211 222222221 11111112 44444432 34566666666
Q ss_pred HHhcCCCHHHHHHHHHHHHhCC--CC--CCH--------HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCH--HHHH
Q 038190 288 SLCKDVLVDKAKELFLDMKSRG--II--PDV--------VVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDT--SSYN 353 (531)
Q Consensus 288 ~~~~~~~~~~a~~~~~~~~~~~--~~--~~~--------~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~--~~~~ 353 (531)
+.+..|.++-+.+....+.+.- +. -+. ..|-.-+.+.....+++++.+.+..+. |.. ..+.
T Consensus 697 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~ 771 (932)
T PRK13184 697 VACDLGNWEFFSQFSDILAEVSDEITFTESIVEQKVEELMFFLKGLEALSNKEDYEKAFKHLDNTD-----PTLILYAFD 771 (932)
T ss_pred HHHHhccHHHHHHHHHHHHHHhhhccchHHHHhhhHHHHHHHHHHHHHHHccccHHHHHhhhhhCC-----HHHHHHHHH
Confidence 7788999888877776665421 11 111 012222344444455666555333221 122 2233
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHhh
Q 038190 354 TLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLP 433 (531)
Q Consensus 354 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 433 (531)
.++.-+.-.++.+....+.+.+...-... .-.......-|++|.-..++++|-+++....
T Consensus 772 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 831 (932)
T PRK13184 772 LFAIQALLDEEGESIIQLLQLIYDYVSEE--------------------ERHDHLLVYEIQAHLWNRDLKKAYKLLNRYP 831 (932)
T ss_pred HHHHHHHHhccchHHHHHHHHHHhccCCh--------------------hhhhhhhHHHHHHHHHhccHHHHHHHHHhCC
Confidence 33333333444444444443333211110 0123345667888888999999999998776
Q ss_pred hCCCCCcHHHHHHHHHHH--HHcCCHHHHHHHHHHHH
Q 038190 434 RYGPEPNVVTYTVMICGL--CIEGGIEKAYDLLPDME 468 (531)
Q Consensus 434 ~~g~~p~~~~~~~l~~~~--~~~g~~~~A~~~~~~~~ 468 (531)
..-.. +..+...++.+| +-.++.+-|...|....
T Consensus 832 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 867 (932)
T PRK13184 832 LDLLL-DEYSEAFVLYGCYLALTEDREAAKAHFSGCR 867 (932)
T ss_pred hhhhc-cccchHHHHHHHHHHhcCchhHHHHHHhhcc
Confidence 53222 222333333333 23566666666665544
No 477
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=32.65 E-value=3.4e+02 Score=23.79 Aligned_cols=50 Identities=16% Similarity=0.152 Sum_probs=28.7
Q ss_pred ccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH-cCCChHHHHHHHHHhhh
Q 038190 385 SCILEAAELFRTLHNTKFELDLTVFNCLVDGLC-KSWRLRSAWELFKKLPR 434 (531)
Q Consensus 385 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~ 434 (531)
+.+++....++.+.+.+...+..=-+.|..+|- ..|....+++++..+.+
T Consensus 15 eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e~ 65 (236)
T PF00244_consen 15 ERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSIEQ 65 (236)
T ss_dssp THHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhHhh
Confidence 455666677777776666666666666666663 34555556666655543
No 478
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=32.37 E-value=1.1e+02 Score=29.66 Aligned_cols=98 Identities=9% Similarity=0.017 Sum_probs=63.7
Q ss_pred CCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCcchHHHHH
Q 038190 66 VELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVAL 145 (531)
Q Consensus 66 g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~ 145 (531)
++++.|..++..+++..++ ++..|..=..++.+.+++..|+.=+.++++.. +--...|..-..++.+.+.+.+|+..|
T Consensus 18 ~~fd~avdlysKaI~ldpn-ca~~~anRa~a~lK~e~~~~Al~Da~kaie~d-P~~~K~Y~rrg~a~m~l~~~~~A~~~l 95 (476)
T KOG0376|consen 18 KVFDVAVDLYSKAIELDPN-CAIYFANRALAHLKVESFGGALHDALKAIELD-PTYIKAYVRRGTAVMALGEFKKALLDL 95 (476)
T ss_pred chHHHHHHHHHHHHhcCCc-ceeeechhhhhheeechhhhHHHHHHhhhhcC-chhhheeeeccHHHHhHHHHHHHHHHH
Confidence 3789999999998885543 33344444467788888888888777777664 222334555555666667777888888
Q ss_pred HHHHHCCCCCChhhHHHHHHHH
Q 038190 146 GRILRKVFSPDVVTLGCLIRGL 167 (531)
Q Consensus 146 ~~~~~~~~~~~~~~~~~li~~~ 167 (531)
+..... .|+..-....+.-|
T Consensus 96 ~~~~~l--~Pnd~~~~r~~~Ec 115 (476)
T KOG0376|consen 96 EKVKKL--APNDPDATRKIDEC 115 (476)
T ss_pred HHhhhc--CcCcHHHHHHHHHH
Confidence 777665 45555544444444
No 479
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=32.29 E-value=93 Score=21.65 Aligned_cols=18 Identities=6% Similarity=0.036 Sum_probs=12.1
Q ss_pred ccCChhHHHhhHHHhhhc
Q 038190 505 KDENCHECMNLLPSFLSR 522 (531)
Q Consensus 505 ~~g~~~~a~~~~~~~~~~ 522 (531)
..-.|++|.++-++|...
T Consensus 51 ~~~~w~~ar~~~~Km~~~ 68 (79)
T cd02679 51 VGSQWERARRLQQKMKTN 68 (79)
T ss_pred ccHHHHHHHHHHHHHHHH
Confidence 334677788887777654
No 480
>KOG1114 consensus Tripeptidyl peptidase II [Posttranslational modification, protein turnover, chaperones]
Probab=32.19 E-value=6.9e+02 Score=27.14 Aligned_cols=120 Identities=17% Similarity=0.024 Sum_probs=64.5
Q ss_pred CCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHhCCCCCCHH
Q 038190 328 GRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLT 407 (531)
Q Consensus 328 g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 407 (531)
..-.+|.++-.+|... -+.+|.++++.|..-.-.+.++.-.+..-.-....++...+.|.++.+.--.-|..
T Consensus 1161 D~r~da~klk~~me~q--------k~tli~AL~kKg~a~ak~e~l~g~~e~daeee~s~ld~~~e~y~el~kw~d~~dsK 1232 (1304)
T KOG1114|consen 1161 DTRPDAVKLKKKMEKQ--------KDTLIDALVKKGEAFAKYEALKGHKEQDAEEELSKLDSYNENYQELLKWLDASDSK 1232 (1304)
T ss_pred CCcchHHHHHHHHHHH--------HHHHHHHHHHhhhHHhhhhhhcccccccchhhhhhhhhHHHHHHHHHHHhhcCCch
Confidence 3344566666666654 25677777766543222222221111100000122344445555554433333666
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHhhh-CCCCCcHHHHHHHHHHHHHcC
Q 038190 408 VFNCLVDGLCKSWRLRSAWELFKKLPR-YGPEPNVVTYTVMICGLCIEG 455 (531)
Q Consensus 408 ~~~~l~~~~~~~g~~~~A~~~~~~~~~-~g~~p~~~~~~~l~~~~~~~g 455 (531)
++..-...+...|++..|.+++.++.+ .|-.++...|..++..+...|
T Consensus 1233 ~~~~a~~ha~~~~~yGr~lK~l~kliee~~es~t~~~~~~~~el~~~Lg 1281 (1304)
T KOG1114|consen 1233 VWQIAKKHAKALGQYGRALKALLKLIEENGESATKDVAVLLAELLENLG 1281 (1304)
T ss_pred heehhHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhC
Confidence 777777777778888888888877765 445566666666666555555
No 481
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=31.94 E-value=2e+02 Score=21.36 Aligned_cols=17 Identities=24% Similarity=0.395 Sum_probs=7.1
Q ss_pred HHHhcCCHHHHHHHHHH
Q 038190 323 GYCLMGRIDDARKLFVS 339 (531)
Q Consensus 323 ~~~~~g~~~~a~~~~~~ 339 (531)
-|...|+.++|...+.+
T Consensus 11 ey~~~~d~~ea~~~l~e 27 (113)
T PF02847_consen 11 EYFSSGDVDEAVECLKE 27 (113)
T ss_dssp HHHHHT-HHHHHHHHHH
T ss_pred HHhcCCCHHHHHHHHHH
Confidence 34444444444444444
No 482
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=31.85 E-value=80 Score=33.11 Aligned_cols=118 Identities=13% Similarity=0.075 Sum_probs=66.0
Q ss_pred cccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHcCCHHHHHHH
Q 038190 384 NSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDL 463 (531)
Q Consensus 384 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~ 463 (531)
.++++.|++.-..+- +..+|..|+..-...|+.+-|+..|++.+.. +.|--.|.-.|+.++-.++
T Consensus 656 ~gnle~ale~akkld------d~d~w~rLge~Al~qgn~~IaEm~yQ~~knf---------ekLsfLYliTgn~eKL~Km 720 (1202)
T KOG0292|consen 656 CGNLEVALEAAKKLD------DKDVWERLGEEALRQGNHQIAEMCYQRTKNF---------EKLSFLYLITGNLEKLSKM 720 (1202)
T ss_pred cCCHHHHHHHHHhcC------cHHHHHHHHHHHHHhcchHHHHHHHHHhhhh---------hheeEEEEEeCCHHHHHHH
Confidence 444554444443332 6779999999999999999999998887752 2222335556666665444
Q ss_pred HHHHHHH------------HhhHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChhHHHhhHHHhhhcchh
Q 038190 464 LPDMEEK------------IRECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLLPSFLSRNQE 525 (531)
Q Consensus 464 ~~~~~~~------------i~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 525 (531)
.+..+.. +++.++-.++++.- |..| . .| + .....|.-++|.++.++.......
T Consensus 721 ~~iae~r~D~~~~~qnalYl~dv~ervkIl~n~---g~~~-l-ay---l-ta~~~G~~~~ae~l~ee~~~~~~~ 785 (1202)
T KOG0292|consen 721 MKIAEIRNDATGQFQNALYLGDVKERVKILENG---GQLP-L-AY---L-TAAAHGLEDQAEKLGEELEKQVPS 785 (1202)
T ss_pred HHHHHhhhhhHHHHHHHHHhccHHHHHHHHHhc---Cccc-H-HH---H-HHhhcCcHHHHHHHHHhhccccCC
Confidence 4433222 13333333333221 2221 1 11 1 122357778888888887765443
No 483
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=31.84 E-value=5.1e+02 Score=25.56 Aligned_cols=81 Identities=16% Similarity=-0.023 Sum_probs=54.2
Q ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHhhh-------CCCCCc-----------HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 038190 406 LTVFNCLVDGLCKSWRLRSAWELFKKLPR-------YGPEPN-----------VVTYTVMICGLCIEGGIEKAYDLLPDM 467 (531)
Q Consensus 406 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------~g~~p~-----------~~~~~~l~~~~~~~g~~~~A~~~~~~~ 467 (531)
...||.|.-.+.+.|.+..+..+|.+..+ .|++|. ..+||.= -.|...|++-.|.+.|.+.
T Consensus 283 cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG-~~~Lh~grPl~AfqCf~~a 361 (696)
T KOG2471|consen 283 CIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCG-LLYLHSGRPLLAFQCFQKA 361 (696)
T ss_pred heeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhh-HHHHhcCCcHHHHHHHHHH
Confidence 33457777777888888888888887763 465553 2344433 3577889988887777654
Q ss_pred HHHHhhHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc
Q 038190 468 EEKIRECLKAIELLHKMAKRYVKPDEITVSILEELLNK 505 (531)
Q Consensus 468 ~~~i~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 505 (531)
... +..++..|-.+.++|..
T Consensus 362 v~v------------------fh~nPrlWLRlAEcCim 381 (696)
T KOG2471|consen 362 VHV------------------FHRNPRLWLRLAECCIM 381 (696)
T ss_pred HHH------------------HhcCcHHHHHHHHHHHH
Confidence 432 35567778888887764
No 484
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=31.61 E-value=4.1e+02 Score=27.29 Aligned_cols=49 Identities=14% Similarity=0.128 Sum_probs=40.2
Q ss_pred HHHHHHHcCCChHHHHHHHHHhhhC--CCCCcHHHHHHHHHHHHHcCCHHH
Q 038190 411 CLVDGLCKSWRLRSAWELFKKLPRY--GPEPNVVTYTVMICGLCIEGGIEK 459 (531)
Q Consensus 411 ~l~~~~~~~g~~~~A~~~~~~~~~~--g~~p~~~~~~~l~~~~~~~g~~~~ 459 (531)
+|..+|...|++-.+.++++.+... |-+.-...||..|....+.|.++-
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l 83 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFEL 83 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccH
Confidence 8999999999999999999999863 333345678888999999998763
No 485
>PF05944 Phage_term_smal: Phage small terminase subunit; InterPro: IPR010270 This entry is represented by Bacteriophage P2, GpM. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several phage small terminase subunit proteins as well as some related bacterial sequences []. M protein is probably an endonuclease which directs cos cleavage. The Q, P and M proteins are needed to package DNA into proheads and for the conversion of proheads to capsids.; GO: 0003677 DNA binding, 0004519 endonuclease activity, 0019069 viral capsid assembly
Probab=31.51 E-value=2.5e+02 Score=21.92 Aligned_cols=29 Identities=14% Similarity=0.061 Sum_probs=17.3
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHhCCC
Q 038190 90 FNSLLGALAGKKYYVNFICLSERLNTIGL 118 (531)
Q Consensus 90 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~ 118 (531)
+..++--+...|+++.|+++.+.+++.|.
T Consensus 51 l~~~mvW~~D~Gd~~~AL~~a~yAi~~~l 79 (132)
T PF05944_consen 51 LMTVMVWLFDVGDFDGALDIAEYAIEHGL 79 (132)
T ss_pred HHhhHhhhhcccCHHHHHHHHHHHHHcCC
Confidence 33444455566666666666666666663
No 486
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=31.46 E-value=4.2e+02 Score=24.38 Aligned_cols=177 Identities=14% Similarity=0.053 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhcCC---HHHHHHHHHHHHhcCC----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCccc
Q 038190 314 VVVYSSLIDGYCLMGR---IDDARKLFVSIESEGC----IPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSC 386 (531)
Q Consensus 314 ~~~~~~ll~~~~~~g~---~~~a~~~~~~~~~~g~----~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 386 (531)
......++...+ |+ ...|.+.|+.....+. ..+......++....+.|..+.-..+++......
T Consensus 129 ~~lr~~~~~~a~--~~~~~~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~~~------- 199 (324)
T PF11838_consen 129 RLLRALLLSLAC--GDPECVAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKNST------- 199 (324)
T ss_dssp HHHHHHHHHHHH--T-HHHHHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHTTS-------
T ss_pred HHHHHHHHHHhc--cchhHHHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhccC-------
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHhhhCCCCCcHHHHHHHHHHH-HHcCCHHHHHHHHH
Q 038190 387 ILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGL-CIEGGIEKAYDLLP 465 (531)
Q Consensus 387 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~-~~~g~~~~A~~~~~ 465 (531)
+..--..++.+++...+.+...++++.....+..+....+..+.... ...-..+.+.+++
T Consensus 200 ------------------~~~~k~~~l~aLa~~~d~~~~~~~l~~~l~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~- 260 (324)
T PF11838_consen 200 ------------------SPEEKRRLLSALACSPDPELLKRLLDLLLSNDKVRSQDIRYVLAGLASSNPVGRDLAWEFF- 260 (324)
T ss_dssp ------------------THHHHHHHHHHHTT-S-HHHHHHHHHHHHCTSTS-TTTHHHHHHHHH-CSTTCHHHHHHHH-
T ss_pred ------------------CHHHHHHHHHhhhccCCHHHHHHHHHHHcCCcccccHHHHHHHHHHhcCChhhHHHHHHHH-
Q ss_pred HHHHHHhhHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChhHHHhhHHHhhhcchhhhhccC
Q 038190 466 DMEEKIRECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLLPSFLSRNQEESKLTR 531 (531)
Q Consensus 466 ~~~~~i~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~r 531 (531)
...|+.+.+.--.-+. ....++..+...-..++-.+.++++......+.+..|
T Consensus 261 ------------~~n~~~i~~~~~~~~~-~~~~~~~~~~~~~~t~~~~~~~~~f~~~~~~~~~~~~ 313 (324)
T PF11838_consen 261 ------------KENWDAIIKKFGTNSS-ALSRVIKSFAGNFSTEEQLDELEEFFEDKPKPPPGLR 313 (324)
T ss_dssp ------------HHCHHHHHCHC-TTSH-CCHHHHHCCCTT--SHHHHHHHHHHHHHHCTCCCTTT
T ss_pred ------------HHHHHHHHHHhcCCCh-HHHHHHHHHhccCCCHHHHHHHHHHHhhCcCCChHHH
No 487
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=31.26 E-value=5.3e+02 Score=25.49 Aligned_cols=119 Identities=14% Similarity=0.038 Sum_probs=72.0
Q ss_pred HHHhcCCHHHHHHHHHHHH---hcCCCCCH-----HHHHHHHHHHHhcCCHHHHHHHHHHHHh-------CCCCCCcccH
Q 038190 323 GYCLMGRIDDARKLFVSIE---SEGCIPDT-----SSYNTLINSYSKIEKVEEALSLYGEMIS-------MGVRPDNSCI 387 (531)
Q Consensus 323 ~~~~~g~~~~a~~~~~~~~---~~g~~p~~-----~~~~~li~~~~~~~~~~~a~~~~~~~~~-------~~~~~~~~~~ 387 (531)
.+--.|++.+|.+++...- ..|...+. ..||.|...+.+.|.+..+..+|.+..+ .|+.|.
T Consensus 249 ~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~---- 324 (696)
T KOG2471|consen 249 LEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPA---- 324 (696)
T ss_pred HHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCC----
Confidence 3445799999998886642 22322221 2345555556677777777777766543 333332
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHc
Q 038190 388 LEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIE 454 (531)
Q Consensus 388 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~ 454 (531)
.++.-. -.......-...-.|...|++-.|.+.|...... +..++..|-.|..+|...
T Consensus 325 ----~~~tls----~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~v-fh~nPrlWLRlAEcCima 382 (696)
T KOG2471|consen 325 ----KTFTLS----QNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHV-FHRNPRLWLRLAECCIMA 382 (696)
T ss_pred ----cceehh----cccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHH-HhcCcHHHHHHHHHHHHH
Confidence 000000 0001222223455678899999999999998874 466889999999998753
No 488
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=31.10 E-value=3.7e+02 Score=23.67 Aligned_cols=84 Identities=13% Similarity=0.012 Sum_probs=53.1
Q ss_pred hcCCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHH-HHHHHHHhcCCHHH
Q 038190 290 CKDVLVDKAKELFLDMKSRGIIPDV-VVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYN-TLINSYSKIEKVEE 367 (531)
Q Consensus 290 ~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~-~li~~~~~~~~~~~ 367 (531)
....+++.|..-|.+... +.|+. .-|+.-+..+.+..+++.+..--.+.++. .|+..--. .+..+......++.
T Consensus 21 f~~k~y~~ai~~y~raI~--~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql--~~N~vk~h~flg~~~l~s~~~~e 96 (284)
T KOG4642|consen 21 FIPKRYDDAIDCYSRAIC--INPTVASYYTNRALCHLKLKHWEPVEEDCRRALQL--DPNLVKAHYFLGQWLLQSKGYDE 96 (284)
T ss_pred cchhhhchHHHHHHHHHh--cCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhc--ChHHHHHHHHHHHHHHhhccccH
Confidence 344556777775555444 46666 44566666778888888887766666654 44544333 34445567778888
Q ss_pred HHHHHHHHHh
Q 038190 368 ALSLYGEMIS 377 (531)
Q Consensus 368 a~~~~~~~~~ 377 (531)
|+..+++...
T Consensus 97 aI~~Lqra~s 106 (284)
T KOG4642|consen 97 AIKVLQRAYS 106 (284)
T ss_pred HHHHHHHHHH
Confidence 8888877643
No 489
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=30.26 E-value=4.1e+02 Score=23.97 Aligned_cols=91 Identities=13% Similarity=-0.030 Sum_probs=42.5
Q ss_pred ChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChhhhhcchHHHHHHHHHHHhCCCCCCccccCCHhhHHHHHHHHh
Q 038190 211 FVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLC 290 (531)
Q Consensus 211 ~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~ 290 (531)
+..+|..+|+...+.|..+...+...+-..|...............|...+...-..+ +......+...|.
T Consensus 128 d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~---------~~~a~~~lg~~y~ 198 (292)
T COG0790 128 DLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG---------NPDAQLLLGRMYE 198 (292)
T ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc---------CHHHHHHHHHHHH
Confidence 5666666666666665443211122222222221100011111234555666665554 2333333444442
Q ss_pred c----CCCHHHHHHHHHHHHhCCC
Q 038190 291 K----DVLVDKAKELFLDMKSRGI 310 (531)
Q Consensus 291 ~----~~~~~~a~~~~~~~~~~~~ 310 (531)
. ..+..+|...|...-+.|.
T Consensus 199 ~G~Gv~~d~~~A~~wy~~Aa~~g~ 222 (292)
T COG0790 199 KGLGVPRDLKKAFRWYKKAAEQGD 222 (292)
T ss_pred cCCCCCcCHHHHHHHHHHHHHCCC
Confidence 2 3467778888877777764
No 490
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=30.12 E-value=77 Score=24.09 Aligned_cols=46 Identities=9% Similarity=0.007 Sum_probs=22.8
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCC
Q 038190 92 SLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIG 137 (531)
Q Consensus 92 ~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~ 137 (531)
.++..+...+..-.|.++++.+.+.+...+..|....++.+.+.|-
T Consensus 12 ~Il~~l~~~~~~~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gl 57 (120)
T PF01475_consen 12 AILELLKESPEHLTAEEIYDKLRKKGPRISLATVYRTLDLLEEAGL 57 (120)
T ss_dssp HHHHHHHHHSSSEEHHHHHHHHHHTTTT--HHHHHHHHHHHHHTTS
T ss_pred HHHHHHHcCCCCCCHHHHHHHhhhccCCcCHHHHHHHHHHHHHCCe
Confidence 3444444444455555666666655555555554445555554443
No 491
>PRK14136 recX recombination regulator RecX; Provisional
Probab=29.71 E-value=4.4e+02 Score=24.14 Aligned_cols=84 Identities=15% Similarity=0.123 Sum_probs=43.0
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHH
Q 038190 347 PDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAW 426 (531)
Q Consensus 347 p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 426 (531)
|-...++..+..|....... .++.++|.+.|+.+ +....+++.+.+.++.-|...-..++.... +.+ .-.
T Consensus 160 ~~~~lk~kAL~lLSrReRSe--~ELr~KL~kkG~~e-----e~IE~VIerLke~gYLDDeRFAesyVr~R~--~kk-Gp~ 229 (309)
T PRK14136 160 PARSLKGRALGYLSRREYSR--AELARKLAPYADES-----DSVEPLLDALEREGWLSDARFAESLVHRRA--SRV-GSA 229 (309)
T ss_pred cHHHHHHHHHHHhhcccccH--HHHHHHHHHcCCCH-----HHHHHHHHHHHHcCCcCHHHHHHHHHHHHh--hch-hHH
Confidence 33444444444444332222 24444555544433 344455555556665556655566665432 232 335
Q ss_pred HHHHHhhhCCCCCc
Q 038190 427 ELFKKLPRYGPEPN 440 (531)
Q Consensus 427 ~~~~~~~~~g~~p~ 440 (531)
.|-.++.++||.++
T Consensus 230 rIrqELrQKGId~e 243 (309)
T PRK14136 230 RIVSELKRHAVGDA 243 (309)
T ss_pred HHHHHHHHcCCCHH
Confidence 66778888888643
No 492
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=29.47 E-value=4.3e+02 Score=23.88 Aligned_cols=19 Identities=16% Similarity=0.100 Sum_probs=12.6
Q ss_pred CHHHHHHHHHHHHhCCCCC
Q 038190 294 LVDKAKELFLDMKSRGIIP 312 (531)
Q Consensus 294 ~~~~a~~~~~~~~~~~~~~ 312 (531)
+..+|..+|+...+.|..+
T Consensus 128 d~~~A~~~~~~Aa~~g~~~ 146 (292)
T COG0790 128 DLVKALKYYEKAAKLGNVE 146 (292)
T ss_pred CHHHHHHHHHHHHHcCChh
Confidence 6667777777777666443
No 493
>COG4003 Uncharacterized protein conserved in archaea [Function unknown]
Probab=29.44 E-value=1.8e+02 Score=20.18 Aligned_cols=30 Identities=10% Similarity=-0.079 Sum_probs=19.3
Q ss_pred HHHHHHccCCHHHHHHHHHHHHhCCCCCCHh
Q 038190 93 LLGALAGKKYYVNFICLSERLNTIGLLPDFV 123 (531)
Q Consensus 93 li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~ 123 (531)
++..+.++.-.++|+++++.|.++| ..+..
T Consensus 37 V~D~L~rCdT~EEAlEii~yleKrG-Ei~~E 66 (98)
T COG4003 37 VIDFLRRCDTEEEALEIINYLEKRG-EITPE 66 (98)
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHhC-CCCHH
Confidence 4555566666777777777777776 44443
No 494
>TIGR01503 MthylAspMut_E methylaspartate mutase, E subunit. This model represents the E (epsilon) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=29.37 E-value=5.5e+02 Score=25.14 Aligned_cols=125 Identities=16% Similarity=0.139 Sum_probs=61.7
Q ss_pred CcchHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcC-----CCCCCCCcHHhHHHHHHHH-----
Q 038190 137 GVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFD-----CRPNVIPNVICYASIIDGL----- 206 (531)
Q Consensus 137 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~-----~~~~~~~~~~~~~~l~~~~----- 206 (531)
.+++-.++++.+.+.| .+| .....|+.|.+.+++++|...+++-.+.| .-|-+.....+...++...
T Consensus 69 ~~~e~i~lL~~l~~~g-~ad--~lp~TIDSyTR~n~y~~A~~~l~~s~~~~~s~LNGfP~VnhGv~~~R~l~~~v~~PvQ 145 (480)
T TIGR01503 69 LLDEHIELLRTLQEEG-GAD--FLPSTIDAYTRQNRYDEAAVGIKESIKAGRSLLNGFPGVNHGVKGCRKVLEAVNLPLQ 145 (480)
T ss_pred cHHHHHHHHHHHHHcc-CCC--ccceeeecccccccHHHHHHHHHhhhhcCcccccCCCcccccHHHHHHHHHhCCCCee
Confidence 4556666666666654 122 33445777888888888887777665422 1222222333444444332
Q ss_pred HhcCChhHHHHHHHHHhhCCCCCC---HhhHHHHHHHHHhcCChhhhhcchHHHHHHHHHHHhCC
Q 038190 207 CKDGFVNKVRVLFLDMKGRGIYPD---AFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGN 268 (531)
Q Consensus 207 ~~~~~~~~a~~~~~~m~~~g~~p~---~~~~~~li~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~ 268 (531)
.+.|. ..+..+++.+...|+.-. ..+|+. -|++.--++++...++.+-++.-...+.+
T Consensus 146 vRHGt-pDarlL~e~~~a~G~~a~EGG~ISYnl---PYsK~vpLe~si~~WqyvdRL~g~y~e~g 206 (480)
T TIGR01503 146 IRHGT-PDARLLAEIILAGGFTSFEGGGISYNI---PYAKNVTLEKSLEDWQYCDRLVGFYEEQG 206 (480)
T ss_pred ccCCC-CcHHHHHHHHHHcCCCccCCCcceecc---ccCCCCCHHHHHHHHHHHHHHHHHHHhcC
Confidence 12232 335666666666655422 233332 23344444555554444444444443333
No 495
>PF04090 RNA_pol_I_TF: RNA polymerase I specific initiation factor; InterPro: IPR007224 The RNA polymerase I specific transcription initiation factor Rrn11 is a member of a multiprotein complex essential for the initiation of transcription by RNA polymerase I. Binding to the DNA template is dependent on the initial binding of other factors [].
Probab=29.36 E-value=3.6e+02 Score=22.94 Aligned_cols=25 Identities=12% Similarity=-0.152 Sum_probs=12.1
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHh
Q 038190 91 NSLLGALAGKKYYVNFICLSERLNT 115 (531)
Q Consensus 91 ~~li~~~~~~~~~~~a~~~~~~m~~ 115 (531)
+.+++.+...|+++.|-++|.-+.+
T Consensus 45 ~~lLh~~llr~d~~rA~Raf~lLiR 69 (199)
T PF04090_consen 45 TDLLHLCLLRGDWDRAYRAFGLLIR 69 (199)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHc
Confidence 3444444445555555555544444
No 496
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=29.09 E-value=7.2e+02 Score=26.40 Aligned_cols=22 Identities=14% Similarity=0.039 Sum_probs=16.1
Q ss_pred hcCChHHHHHHHHHHHHcCCCC
Q 038190 169 MQGKFTEASGLFTKFVAFDCRP 190 (531)
Q Consensus 169 ~~g~~~~a~~~~~~~~~~~~~~ 190 (531)
+.+|++.|+..+.+|...|.+|
T Consensus 270 rgsD~daAl~~la~ml~~Gedp 291 (725)
T PRK13341 270 RGSDPDAALYWLARMVEAGEDP 291 (725)
T ss_pred hcCCHHHHHHHHHHHHHcCCCH
Confidence 3467888888888888777664
No 497
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=28.79 E-value=1.7e+02 Score=21.86 Aligned_cols=47 Identities=9% Similarity=-0.024 Sum_probs=32.0
Q ss_pred HHHHHHhcCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChh
Q 038190 202 IIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWE 248 (531)
Q Consensus 202 l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~ 248 (531)
++..+...+..-.|.++++.+.+.+..++..|....++.+...|-..
T Consensus 6 Il~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gli~ 52 (116)
T cd07153 6 ILEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGLVR 52 (116)
T ss_pred HHHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCEE
Confidence 44555555666678888888887776667777666777777666544
No 498
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=28.70 E-value=8.6e+02 Score=27.19 Aligned_cols=160 Identities=13% Similarity=0.025 Sum_probs=0.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHh---------CCCCCCHHH-----HHHHHHHHHcC
Q 038190 354 TLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHN---------TKFELDLTV-----FNCLVDGLCKS 419 (531)
Q Consensus 354 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~---------~~~~~~~~~-----~~~l~~~~~~~ 419 (531)
.+..+|...|...+|+..|.+... ...+-..+++.... .|-.|...- |..+++.+-+.
T Consensus 925 mlg~~yl~tge~~kAl~cF~~a~S--------g~ge~~aL~~lv~~~~p~~~sv~dG~t~s~e~t~lhYYlkv~rlle~h 996 (1480)
T KOG4521|consen 925 MLGIAYLGTGEPVKALNCFQSALS--------GFGEGNALRKLVYFLLPKRFSVADGKTPSEELTALHYYLKVVRLLEEH 996 (1480)
T ss_pred hhheeeecCCchHHHHHHHHHHhh--------ccccHHHHHHHHHHhcCCCCchhcCCCCCchHHHHHHHHHHHHHHHHh
Q ss_pred CChHHHHHHHHHhhhCCCCCc----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-------------------------
Q 038190 420 WRLRSAWELFKKLPRYGPEPN----VVTYTVMICGLCIEGGIEKAYDLLPDMEEK------------------------- 470 (531)
Q Consensus 420 g~~~~A~~~~~~~~~~g~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------------------------- 470 (531)
+-.+.+.++-..+++. +.++ +.+++.+..-....|.+-+|.+.+-.....
T Consensus 997 n~~E~vcQlA~~AIe~-l~dd~ps~a~~~t~vFnhhldlgh~~qAy~ai~~npdserrrdcLRqlvivLfecg~l~~L~~ 1075 (1480)
T KOG4521|consen 997 NHAEEVCQLAVKAIEN-LPDDNPSVALISTTVFNHHLDLGHWFQAYKAILRNPDSERRRDCLRQLVIVLFECGELEALAT 1075 (1480)
T ss_pred ccHHHHHHHHHHHHHh-CCCcchhHHHHHHHHHHhhhchhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhccchHHHhh
Q ss_pred ---HhhHHHHHH-HHHHHHHcCCCCCHHHHHHHHHHHhccCChhHHHhhHHHhhhc
Q 038190 471 ---IRECLKAIE-LLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLLPSFLSR 522 (531)
Q Consensus 471 ---i~~~~~a~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 522 (531)
||..++... +++..-+....-....|+.|..-+.+.+++-+|-.+.=+...+
T Consensus 1076 fpfigl~~eve~~l~esaaRs~~~mk~nyYelLYAfh~~RhN~RkaatvMYEyamr 1131 (1480)
T KOG4521|consen 1076 FPFIGLEQEVEDFLRESAARSSPSMKKNYYELLYAFHVARHNFRKAATVMYEYAMR 1131 (1480)
T ss_pred CCccchHHHHHHHHHHHHhhcCccccccHHHHHHHHHHhhcchhHHHHHHHHHHHH
No 499
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=28.67 E-value=7.3e+02 Score=26.35 Aligned_cols=51 Identities=10% Similarity=0.169 Sum_probs=35.5
Q ss_pred CHHHHHHHHHHHHcCCChHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHcCC
Q 038190 405 DLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGG 456 (531)
Q Consensus 405 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~ 456 (531)
+....++++.. ++.++++.|+.++.+|.+.|..|....-..++.+.-.-|.
T Consensus 258 hyd~Isa~~ks-irgsD~daAl~~la~ml~~Gedp~~I~Rrl~~~asEdigl 308 (725)
T PRK13341 258 HFDTISAFIKS-LRGSDPDAALYWLARMVEAGEDPRFIFRRMLIAASEDVGL 308 (725)
T ss_pred CHHHHHHHHHH-HhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccCC
Confidence 44445555554 4558999999999999999988876666666655544453
No 500
>PRK14700 recombination factor protein RarA; Provisional
Probab=28.58 E-value=4.6e+02 Score=23.99 Aligned_cols=175 Identities=11% Similarity=-0.019 Sum_probs=91.2
Q ss_pred HHHHHHHHHHHHHc-------CCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCH--hhHHHHHHHHHccCCc
Q 038190 68 LNDALCFFNYMIHM-------QPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDF--VSLNILMNCFCKMIGV 138 (531)
Q Consensus 68 ~~~A~~~~~~~~~~-------~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~--~~~~~li~~~~~~g~~ 138 (531)
.++-..++++.... .+..+..+...++.. ..||...|+.+++.+.......+. .+ .
T Consensus 41 ~~di~~il~ral~~~~~~~~~~~~i~~~al~~ia~~--a~GDaR~aLN~LE~a~~~~~~~~~~~it-------------~ 105 (300)
T PRK14700 41 LVATQKLIEKALSQDEVLAKHKFKIDDGLYNAMHNY--NEGDCRKILNLLERMFLISTRGDEIYLN-------------K 105 (300)
T ss_pred HHHHHHHHHHHHHhhhccCCcCCCcCHHHHHHHHHh--cCCHHHHHHHHHHHHHhhccccCCCccC-------------H
Confidence 44455555555542 133455566665554 468999999999886532100010 11 1
Q ss_pred chHHHHHHHHHHCCCCCChhhHHHHHHHHHh---cCChHHHHHHHHHHHHcCCCCCCCCcHHhHHHHHHHHHhcCC----
Q 038190 139 SDAFVALGRILRKVFSPDVVTLGCLIRGLCM---QGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGF---- 211 (531)
Q Consensus 139 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~---~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---- 211 (531)
+...++...-. ....-+-..+-.+|+++.+ -.|.+.|+-.+.+|++.|.+| ....-..++-++-..|.
T Consensus 106 ~~~~~~~~~~~-~~yDk~gd~HYd~iSAf~KSiRGSDpDAAlYyLArml~~GEDp----~~IaRRLii~AsEDIGlAdP~ 180 (300)
T PRK14700 106 ELFDQAVGETS-RDFHREGKEFYEQLSAFHKSVRGTDPDAAIFWLSVMLDNGVDP----LVIARRMLCIASEDIGNADPQ 180 (300)
T ss_pred HHHHHHHhHHH-hcccCCcchhHHHHHHHHHHhhcCCccHHHHHHHHHHHcCCCH----HHHHHHHHHHHHhhccCCCHH
Confidence 11222221111 1112222233335666655 468899999999999988775 55566666666666664
Q ss_pred -hhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChhhhhcchHHHHHHHH
Q 038190 212 -VNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHE 262 (531)
Q Consensus 212 -~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~a~~~~~ 262 (531)
...|...++....-|++--.......+--++.+-+-..+...+..|++..+
T Consensus 181 al~~a~aa~~A~~~iG~PEa~i~La~aviyLA~aPKSNs~y~A~~~A~~~v~ 232 (300)
T PRK14700 181 ALRVAMDAWNAYEKLGMPEGRLVLAQAAIYLAVAPKSNACYKALAQAQQLVK 232 (300)
T ss_pred HHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHH
Confidence 334555555556666653333343333344444444444444444444443
Done!