Query 038190
Match_columns 531
No_of_seqs 630 out of 3164
Neff 11.6
Searched_HMMs 29240
Date Mon Mar 25 14:24:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038190.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/038190hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpi_A Anaphase-promoting comp 100.0 2.2E-35 7.7E-40 298.8 43.9 436 67-526 68-583 (597)
2 2xpi_A Anaphase-promoting comp 100.0 2.2E-32 7.4E-37 276.9 39.9 411 65-504 97-595 (597)
3 1w3b_A UDP-N-acetylglucosamine 100.0 1.4E-27 4.7E-32 228.0 44.8 376 65-508 12-388 (388)
4 4g26_A Pentatricopeptide repea 100.0 2.4E-30 8.4E-35 250.7 23.9 214 175-419 8-223 (501)
5 4g26_A Pentatricopeptide repea 100.0 3.4E-30 1.2E-34 249.7 23.5 207 213-454 7-223 (501)
6 1w3b_A UDP-N-acetylglucosamine 100.0 1.1E-26 3.6E-31 221.9 42.3 367 93-525 5-371 (388)
7 2y4t_A DNAJ homolog subfamily 99.9 1.5E-22 5.2E-27 197.2 39.0 333 68-450 8-372 (450)
8 2gw1_A Mitochondrial precursor 99.9 2.2E-22 7.6E-27 199.5 40.8 367 65-470 19-478 (514)
9 3fp2_A TPR repeat-containing p 99.9 7.1E-23 2.4E-27 204.3 35.5 400 88-526 26-495 (537)
10 2gw1_A Mitochondrial precursor 99.9 8.4E-23 2.9E-27 202.5 34.7 379 87-526 6-482 (514)
11 2y4t_A DNAJ homolog subfamily 99.9 2.6E-21 8.8E-26 188.4 38.3 288 65-378 39-358 (450)
12 3fp2_A TPR repeat-containing p 99.9 2.9E-20 1E-24 185.3 35.6 365 64-470 37-491 (537)
13 3ieg_A DNAJ homolog subfamily 99.9 1.8E-18 6.2E-23 162.7 37.4 319 87-451 3-350 (359)
14 3ieg_A DNAJ homolog subfamily 99.9 4.2E-18 1.4E-22 160.2 37.5 303 121-469 2-334 (359)
15 2xm6_A Protein corresponding t 99.9 2.7E-16 9.3E-21 154.4 48.5 337 86-466 38-428 (490)
16 2xm6_A Protein corresponding t 99.8 2.4E-16 8.3E-21 154.7 47.3 328 64-436 55-433 (490)
17 3hym_B Cell division cycle pro 99.8 2.9E-18 9.9E-23 159.3 31.2 293 85-423 20-322 (330)
18 3hym_B Cell division cycle pro 99.8 8.3E-18 2.8E-22 156.2 32.3 294 119-458 19-322 (330)
19 2ooe_A Cleavage stimulation fa 99.8 8.9E-17 3E-21 159.5 39.4 404 65-524 25-494 (530)
20 1fch_A Peroxisomal targeting s 99.8 6.1E-18 2.1E-22 159.8 24.2 289 64-374 37-355 (368)
21 1fch_A Peroxisomal targeting s 99.8 8.8E-18 3E-22 158.7 25.3 304 97-433 35-357 (368)
22 4eqf_A PEX5-related protein; a 99.8 7.6E-18 2.6E-22 159.0 21.5 273 159-465 67-351 (365)
23 4eqf_A PEX5-related protein; a 99.8 3.3E-17 1.1E-21 154.6 23.4 268 85-374 63-352 (365)
24 1b89_A Protein (clathrin heavy 99.8 2.5E-17 8.7E-22 152.1 20.9 373 65-519 16-414 (449)
25 2ooe_A Cleavage stimulation fa 99.8 1.4E-14 4.8E-19 143.6 41.9 372 64-470 58-492 (530)
26 3cv0_A Peroxisome targeting si 99.8 1.7E-16 5.9E-21 147.1 25.1 267 86-375 20-312 (327)
27 4g1t_A Interferon-induced prot 99.8 2.7E-15 9.2E-20 146.8 34.7 225 292-523 226-460 (472)
28 3cv0_A Peroxisome targeting si 99.8 4.9E-16 1.7E-20 144.0 27.6 278 123-467 22-312 (327)
29 1xi4_A Clathrin heavy chain; a 99.8 7.6E-15 2.6E-19 151.3 37.6 351 66-514 999-1376(1630)
30 3mkr_A Coatomer subunit epsilo 99.7 1E-15 3.5E-20 138.6 25.1 247 99-377 11-263 (291)
31 1b89_A Protein (clathrin heavy 99.7 1.6E-17 5.6E-22 153.4 12.2 220 99-376 15-234 (449)
32 3spa_A Mtrpol, DNA-directed RN 99.7 6.9E-18 2.4E-22 168.3 9.8 151 278-455 126-286 (1134)
33 3spa_A Mtrpol, DNA-directed RN 99.7 1.3E-17 4.4E-22 166.4 10.9 133 348-516 126-259 (1134)
34 3mkr_A Coatomer subunit epsilo 99.7 1.4E-15 4.7E-20 137.7 23.5 271 65-371 12-287 (291)
35 4g1t_A Interferon-induced prot 99.7 1.4E-14 4.8E-19 141.7 31.2 312 85-434 49-400 (472)
36 1xi4_A Clathrin heavy chain; a 99.7 8.5E-13 2.9E-17 136.4 39.3 336 89-516 987-1339(1630)
37 2pl2_A Hypothetical conserved 99.7 3.1E-14 1.1E-18 123.0 23.1 200 276-520 2-212 (217)
38 3e4b_A ALGK; tetratricopeptide 99.6 5.9E-14 2E-18 135.6 25.2 336 65-468 16-385 (452)
39 2pl2_A Hypothetical conserved 99.6 3.5E-14 1.2E-18 122.7 19.8 200 85-307 3-213 (217)
40 3e4b_A ALGK; tetratricopeptide 99.6 8.8E-14 3E-18 134.4 24.4 141 294-469 194-350 (452)
41 2h6f_A Protein farnesyltransfe 99.6 1.8E-13 6.2E-18 128.0 25.5 254 87-360 97-364 (382)
42 3uq3_A Heat shock protein STI1 99.6 2.9E-13 1E-17 120.5 25.8 231 196-469 5-235 (258)
43 3uq3_A Heat shock protein STI1 99.6 1.1E-13 3.7E-18 123.3 22.5 226 87-343 5-236 (258)
44 4e6h_A MRNA 3'-END-processing 99.6 2.9E-11 1E-15 120.7 40.7 444 68-528 48-576 (679)
45 3u4t_A TPR repeat-containing p 99.6 4.5E-13 1.5E-17 120.4 23.8 245 88-354 4-260 (272)
46 1ouv_A Conserved hypothetical 99.6 4E-12 1.4E-16 114.2 29.7 222 195-469 5-250 (273)
47 1xnf_A Lipoprotein NLPI; TPR, 99.6 9.1E-14 3.1E-18 125.2 18.9 153 64-224 17-172 (275)
48 1ouv_A Conserved hypothetical 99.6 6.8E-12 2.3E-16 112.7 30.6 224 156-436 5-252 (273)
49 3u4t_A TPR repeat-containing p 99.6 3.6E-13 1.2E-17 121.0 22.1 241 65-320 16-261 (272)
50 1xnf_A Lipoprotein NLPI; TPR, 99.6 1.1E-13 3.7E-18 124.7 18.3 249 97-372 15-269 (275)
51 2vq2_A PILW, putative fimbrial 99.6 2.4E-12 8.1E-17 111.9 25.7 208 277-525 6-214 (225)
52 3sf4_A G-protein-signaling mod 99.6 1.2E-13 4.2E-18 132.0 18.7 312 156-509 8-363 (406)
53 2h6f_A Protein farnesyltransfe 99.6 1.4E-12 4.6E-17 122.1 25.0 248 122-452 97-364 (382)
54 2ho1_A Type 4 fimbrial biogene 99.6 9.9E-13 3.4E-17 116.7 23.1 132 88-224 38-169 (252)
55 2ho1_A Type 4 fimbrial biogene 99.6 3.4E-12 1.2E-16 113.1 26.6 202 122-344 37-239 (252)
56 4a1s_A PINS, partner of inscut 99.5 2.6E-13 8.8E-18 130.1 19.5 280 89-377 50-371 (411)
57 2vq2_A PILW, putative fimbrial 99.5 1.9E-12 6.6E-17 112.5 22.9 160 87-252 8-168 (225)
58 3sf4_A G-protein-signaling mod 99.5 2.5E-13 8.6E-18 129.8 18.8 284 85-377 7-335 (406)
59 4a1s_A PINS, partner of inscut 99.5 2.2E-13 7.4E-18 130.6 18.1 286 123-434 49-371 (411)
60 2q7f_A YRRB protein; TPR, prot 99.5 1.3E-12 4.3E-17 115.2 21.3 206 277-526 21-226 (243)
61 2q7f_A YRRB protein; TPR, prot 99.5 6E-13 2.1E-17 117.3 18.8 201 86-308 22-222 (243)
62 3ro2_A PINS homolog, G-protein 99.5 4.3E-13 1.5E-17 124.5 18.0 281 89-378 7-332 (338)
63 4abn_A Tetratricopeptide repea 99.5 4.6E-12 1.6E-16 123.2 24.0 217 251-520 81-319 (474)
64 3ro2_A PINS homolog, G-protein 99.5 6.5E-13 2.2E-17 123.2 17.2 285 124-434 7-331 (338)
65 3nf1_A KLC 1, kinesin light ch 99.5 1E-12 3.4E-17 120.6 16.0 253 195-469 26-306 (311)
66 3ulq_A Response regulator aspa 99.5 1.5E-11 5.2E-16 116.4 24.2 306 97-434 22-367 (383)
67 3ulq_A Response regulator aspa 99.5 3.2E-12 1.1E-16 121.1 19.3 311 132-469 22-367 (383)
68 2ond_A Cleavage stimulation fa 99.5 8.1E-11 2.8E-15 107.6 27.9 218 104-343 33-270 (308)
69 2ond_A Cleavage stimulation fa 99.4 2.4E-10 8.2E-15 104.5 29.7 224 213-470 33-270 (308)
70 1hz4_A MALT regulatory protein 99.4 1.4E-10 4.8E-15 109.4 28.3 282 162-470 19-322 (373)
71 3nf1_A KLC 1, kinesin light ch 99.4 5.3E-13 1.8E-17 122.5 10.6 253 86-377 26-306 (311)
72 3vtx_A MAMA; tetratricopeptide 99.4 6.7E-11 2.3E-15 99.1 22.7 164 278-467 4-167 (184)
73 4abn_A Tetratricopeptide repea 99.4 4.9E-12 1.7E-16 123.0 17.3 212 68-302 84-315 (474)
74 3vtx_A MAMA; tetratricopeptide 99.4 7.7E-11 2.6E-15 98.8 22.2 150 313-487 4-170 (184)
75 1hz4_A MALT regulatory protein 99.4 2.4E-10 8.2E-15 107.7 27.9 283 199-520 17-320 (373)
76 3q15_A PSP28, response regulat 99.4 4.6E-11 1.6E-15 112.9 21.8 241 201-469 106-364 (378)
77 4e6h_A MRNA 3'-END-processing 99.4 1.2E-08 4E-13 102.1 38.4 390 66-470 80-570 (679)
78 3q15_A PSP28, response regulat 99.4 2.4E-10 8.3E-15 107.9 25.0 317 85-434 8-364 (378)
79 3edt_B KLC 2, kinesin light ch 99.3 1.1E-11 3.8E-16 111.7 14.2 207 241-468 11-279 (283)
80 4gyw_A UDP-N-acetylglucosamine 99.3 6.4E-11 2.2E-15 119.7 19.0 175 86-268 8-182 (723)
81 3edt_B KLC 2, kinesin light ch 99.3 1.8E-11 6.1E-16 110.4 12.7 236 65-307 14-280 (283)
82 3as5_A MAMA; tetratricopeptide 99.3 5.2E-10 1.8E-14 93.5 19.1 162 280-467 9-170 (186)
83 3as5_A MAMA; tetratricopeptide 99.3 8.4E-10 2.9E-14 92.2 20.2 147 315-486 9-172 (186)
84 4i17_A Hypothetical protein; T 99.3 3.4E-09 1.2E-13 92.1 24.5 186 277-488 5-210 (228)
85 4gyw_A UDP-N-acetylglucosamine 99.2 3.4E-10 1.1E-14 114.5 19.7 168 276-470 6-174 (723)
86 4i17_A Hypothetical protein; T 99.2 4E-09 1.4E-13 91.7 21.2 174 87-268 7-210 (228)
87 1qqe_A Vesicular transport pro 99.1 2.3E-09 7.9E-14 97.0 17.2 214 211-466 32-265 (292)
88 3mv2_B Coatomer subunit epsilo 99.1 4.9E-08 1.7E-12 86.5 24.8 254 203-525 20-285 (310)
89 2pzi_A Probable serine/threoni 99.1 1.1E-09 3.8E-14 111.3 15.2 190 64-264 403-602 (681)
90 1qqe_A Vesicular transport pro 99.1 7.6E-09 2.6E-13 93.6 17.9 245 139-434 2-268 (292)
91 3mv2_B Coatomer subunit epsilo 99.0 1.4E-07 4.7E-12 83.7 24.8 244 94-378 20-282 (310)
92 3qky_A Outer membrane assembly 99.0 2.8E-08 9.5E-13 88.3 20.1 214 276-515 12-254 (261)
93 2fo7_A Synthetic consensus TPR 99.0 1.2E-08 4.1E-13 80.0 15.7 130 89-225 3-132 (136)
94 3qky_A Outer membrane assembly 99.0 1.6E-08 5.4E-13 89.9 17.1 158 65-225 28-224 (261)
95 2fo7_A Synthetic consensus TPR 99.0 3.8E-08 1.3E-12 77.0 17.6 126 317-467 4-129 (136)
96 2uy1_A Cleavage stimulation fa 99.0 7.9E-07 2.7E-11 86.2 29.9 269 68-375 11-312 (493)
97 3rjv_A Putative SEL1 repeat pr 99.0 1.5E-07 5.1E-12 80.4 22.1 173 259-470 7-197 (212)
98 3urz_A Uncharacterized protein 99.0 1.2E-08 3.9E-13 87.2 14.7 157 94-266 11-185 (208)
99 4ga2_A E3 SUMO-protein ligase 99.0 5.5E-09 1.9E-13 83.8 11.2 139 65-211 10-149 (150)
100 2r5s_A Uncharacterized protein 98.9 1.1E-08 3.7E-13 84.8 13.0 152 65-223 19-171 (176)
101 3urz_A Uncharacterized protein 98.9 5.6E-08 1.9E-12 82.9 17.5 160 281-468 6-184 (208)
102 2vsy_A XCC0866; transferase, g 98.9 2.2E-08 7.5E-13 100.0 16.8 153 66-226 3-158 (568)
103 2ifu_A Gamma-SNAP; membrane fu 98.9 1.2E-08 4E-13 93.1 13.5 232 65-335 4-253 (307)
104 3dra_A Protein farnesyltransfe 98.9 1.1E-06 3.9E-11 78.7 25.9 222 67-307 48-286 (306)
105 3rjv_A Putative SEL1 repeat pr 98.9 2.7E-07 9.1E-12 78.8 20.5 179 296-525 3-200 (212)
106 3qou_A Protein YBBN; thioredox 98.9 5.5E-08 1.9E-12 87.6 16.9 181 67-259 101-283 (287)
107 4ga2_A E3 SUMO-protein ligase 98.9 9.9E-09 3.4E-13 82.3 10.8 145 93-245 3-148 (150)
108 3dra_A Protein farnesyltransfe 98.9 1.3E-06 4.4E-11 78.3 25.4 225 102-342 48-286 (306)
109 2r5s_A Uncharacterized protein 98.9 1.7E-08 5.9E-13 83.5 12.5 163 88-258 7-171 (176)
110 2yhc_A BAMD, UPF0169 lipoprote 98.9 3.9E-07 1.4E-11 78.7 21.2 183 279-469 4-212 (225)
111 2pzi_A Probable serine/threoni 98.9 3.3E-08 1.1E-12 100.5 16.4 174 98-294 402-583 (681)
112 2yhc_A BAMD, UPF0169 lipoprote 98.9 1.1E-07 3.7E-12 82.3 17.3 158 65-226 17-214 (225)
113 3qou_A Protein YBBN; thioredox 98.9 4.5E-08 1.5E-12 88.2 15.2 153 64-223 129-282 (287)
114 2uy1_A Cleavage stimulation fa 98.9 7.4E-06 2.5E-10 79.4 31.0 367 100-521 7-412 (493)
115 2ifu_A Gamma-SNAP; membrane fu 98.8 5.6E-08 1.9E-12 88.6 15.1 204 135-376 4-222 (307)
116 2vsy_A XCC0866; transferase, g 98.8 1.4E-07 4.8E-12 94.1 15.9 150 100-257 2-154 (568)
117 3u3w_A Transcriptional activat 98.7 5.6E-06 1.9E-10 74.7 24.1 170 282-468 78-264 (293)
118 3q7a_A Farnesyltransferase alp 98.7 1.9E-05 6.4E-10 71.6 26.6 172 67-247 69-258 (349)
119 4gco_A Protein STI-1; structur 98.7 3.6E-07 1.2E-11 70.5 13.4 109 88-203 14-122 (126)
120 3q7a_A Farnesyltransferase alp 98.7 6.7E-06 2.3E-10 74.5 23.5 244 67-343 52-331 (349)
121 3u3w_A Transcriptional activat 98.7 2.4E-06 8.1E-11 77.2 20.8 171 162-342 80-265 (293)
122 1hh8_A P67PHOX, NCF-2, neutrop 98.7 1.2E-06 4E-11 74.9 17.7 133 89-226 8-151 (213)
123 3gyz_A Chaperone protein IPGC; 98.7 8.1E-07 2.8E-11 70.7 14.8 99 278-378 35-133 (151)
124 2vgx_A Chaperone SYCD; alterna 98.7 1.6E-07 5.5E-12 74.9 10.4 110 74-186 9-118 (148)
125 2qfc_A PLCR protein; TPR, HTH, 98.6 1.6E-06 5.4E-11 78.3 18.1 173 279-468 75-264 (293)
126 1na0_A Designed protein CTPR3; 98.6 8.6E-07 3E-11 68.0 14.0 114 87-207 9-122 (125)
127 1hh8_A P67PHOX, NCF-2, neutrop 98.6 2.6E-06 8.8E-11 72.7 18.1 140 281-435 8-150 (213)
128 1a17_A Serine/threonine protei 98.6 9.1E-07 3.1E-11 72.0 14.4 129 88-223 14-144 (166)
129 3gyz_A Chaperone protein IPGC; 98.6 1.3E-07 4.3E-12 75.4 8.7 99 86-186 35-133 (151)
130 1p5q_A FKBP52, FK506-binding p 98.6 5.6E-08 1.9E-12 89.6 7.3 150 67-223 128-292 (336)
131 2e2e_A Formate-dependent nitri 98.6 4.2E-07 1.4E-11 75.1 12.0 120 64-186 22-144 (177)
132 2qfc_A PLCR protein; TPR, HTH, 98.6 1.8E-06 6.3E-11 77.9 17.2 178 87-264 75-270 (293)
133 3gw4_A Uncharacterized protein 98.6 3.3E-07 1.1E-11 77.6 11.6 159 65-224 5-175 (203)
134 1a17_A Serine/threonine protei 98.6 3E-06 1E-10 68.9 16.7 128 315-467 14-143 (166)
135 2lni_A Stress-induced-phosphop 98.6 1.2E-06 4.1E-11 68.1 13.3 118 86-210 15-132 (133)
136 4gco_A Protein STI-1; structur 98.6 2.7E-06 9.4E-11 65.5 14.6 96 316-435 15-110 (126)
137 2vyi_A SGTA protein; chaperone 98.6 1.7E-06 5.8E-11 66.9 13.7 119 87-212 12-130 (131)
138 3gw4_A Uncharacterized protein 98.5 6.8E-07 2.3E-11 75.6 11.7 143 157-307 26-175 (203)
139 2c2l_A CHIP, carboxy terminus 98.5 2.2E-06 7.5E-11 76.7 15.3 98 87-186 4-101 (281)
140 2e2e_A Formate-dependent nitri 98.5 6.9E-07 2.4E-11 73.8 10.3 122 97-225 20-144 (177)
141 4f3v_A ESX-1 secretion system 98.5 1.2E-06 4.1E-11 76.6 11.8 187 65-268 19-238 (282)
142 1na0_A Designed protein CTPR3; 98.5 9.1E-06 3.1E-10 62.1 15.9 97 315-435 10-106 (125)
143 1p5q_A FKBP52, FK506-binding p 98.5 4.6E-06 1.6E-10 76.8 16.1 98 349-470 196-294 (336)
144 2fbn_A 70 kDa peptidylprolyl i 98.5 2.7E-07 9.4E-12 77.9 7.1 131 87-224 38-185 (198)
145 2vgx_A Chaperone SYCD; alterna 98.5 7.1E-07 2.4E-11 71.1 9.1 110 109-225 9-118 (148)
146 2xcb_A PCRH, regulatory protei 98.5 1.4E-06 4.9E-11 68.8 10.7 99 86-186 17-115 (142)
147 2c2l_A CHIP, carboxy terminus 98.4 5.2E-06 1.8E-10 74.3 15.5 186 278-469 3-198 (281)
148 4f3v_A ESX-1 secretion system 98.4 2.5E-06 8.4E-11 74.7 12.8 128 201-344 107-238 (282)
149 2lni_A Stress-induced-phosphop 98.4 7.4E-06 2.5E-10 63.5 14.2 96 315-434 17-112 (133)
150 3upv_A Heat shock protein STI1 98.4 5.3E-06 1.8E-10 63.9 13.1 98 87-186 4-101 (126)
151 2vyi_A SGTA protein; chaperone 98.4 6.8E-06 2.3E-10 63.4 13.7 120 121-247 11-130 (131)
152 4gcn_A Protein STI-1; structur 98.4 7.6E-06 2.6E-10 63.1 13.0 98 349-469 8-111 (127)
153 1elw_A TPR1-domain of HOP; HOP 98.4 1.1E-05 3.6E-10 61.0 13.6 98 87-186 4-101 (118)
154 3dss_A Geranylgeranyl transfer 98.4 7.2E-05 2.5E-09 67.4 20.8 193 67-268 45-268 (331)
155 3q49_B STIP1 homology and U bo 98.4 6.3E-06 2.2E-10 64.5 12.3 99 86-186 8-106 (137)
156 3sz7_A HSC70 cochaperone (SGT) 98.4 6.3E-06 2.1E-10 67.0 12.5 100 86-187 10-109 (164)
157 3upv_A Heat shock protein STI1 98.3 2E-05 6.9E-10 60.5 14.1 95 316-434 6-100 (126)
158 2kck_A TPR repeat; tetratricop 98.3 8E-06 2.7E-10 61.0 11.6 103 405-526 5-110 (112)
159 4b4t_Q 26S proteasome regulato 98.3 5.3E-05 1.8E-09 72.6 20.1 200 65-264 17-249 (434)
160 3dss_A Geranylgeranyl transfer 98.3 0.00051 1.8E-08 61.9 24.3 229 98-343 40-304 (331)
161 2xcb_A PCRH, regulatory protei 98.3 4E-06 1.4E-10 66.2 9.5 98 122-225 18-115 (142)
162 3sz7_A HSC70 cochaperone (SGT) 98.3 2.6E-05 8.9E-10 63.2 14.4 97 314-434 11-107 (164)
163 4gcn_A Protein STI-1; structur 98.3 1.4E-05 4.9E-10 61.5 11.9 98 88-186 9-112 (127)
164 1elw_A TPR1-domain of HOP; HOP 98.2 4.4E-05 1.5E-09 57.4 14.2 100 121-226 3-102 (118)
165 2dba_A Smooth muscle cell asso 98.2 4.4E-05 1.5E-09 60.4 14.6 98 86-186 27-128 (148)
166 1hxi_A PEX5, peroxisome target 98.2 5.9E-06 2E-10 63.1 8.9 96 89-186 19-114 (121)
167 2fbn_A 70 kDa peptidylprolyl i 98.2 1.4E-05 4.7E-10 67.3 11.9 131 279-433 38-184 (198)
168 4b4t_Q 26S proteasome regulato 98.2 1.9E-05 6.6E-10 75.6 14.5 207 94-307 11-244 (434)
169 2kck_A TPR repeat; tetratricop 98.2 1.8E-05 6.1E-10 59.1 11.3 97 88-185 7-105 (112)
170 3q49_B STIP1 homology and U bo 98.2 2.9E-05 1E-09 60.5 12.7 101 119-225 6-106 (137)
171 1elr_A TPR2A-domain of HOP; HO 98.2 1.7E-05 5.8E-10 61.2 10.9 98 88-186 5-108 (131)
172 1kt0_A FKBP51, 51 kDa FK506-bi 98.2 1.3E-06 4.4E-11 84.2 5.2 148 67-222 249-412 (457)
173 1elr_A TPR2A-domain of HOP; HO 98.2 2.2E-05 7.4E-10 60.6 11.2 115 314-451 4-122 (131)
174 1wao_1 Serine/threonine protei 98.1 8.4E-06 2.9E-10 78.9 10.3 115 64-181 18-134 (477)
175 1hxi_A PEX5, peroxisome target 98.1 2E-05 6.7E-10 60.1 10.3 96 124-225 19-114 (121)
176 2dba_A Smooth muscle cell asso 98.1 0.00017 5.7E-09 56.9 15.9 100 276-378 25-128 (148)
177 2xev_A YBGF; tetratricopeptide 98.1 9E-05 3.1E-09 57.0 13.9 95 91-186 6-105 (129)
178 3n71_A Histone lysine methyltr 98.1 1E-05 3.5E-10 77.8 9.8 137 166-308 318-464 (490)
179 1wao_1 Serine/threonine protei 98.1 3.3E-06 1.1E-10 81.7 6.5 124 90-220 9-134 (477)
180 3ro3_A PINS homolog, G-protein 98.1 3.1E-05 1E-09 62.3 11.4 136 316-469 11-157 (164)
181 3k9i_A BH0479 protein; putativ 98.1 6E-06 2.1E-10 62.6 6.2 25 90-114 30-54 (117)
182 3ro3_A PINS homolog, G-protein 98.1 1.7E-05 5.8E-10 63.9 9.0 136 88-223 10-156 (164)
183 3n71_A Histone lysine methyltr 98.0 2.4E-05 8.3E-10 75.2 11.3 133 205-343 318-464 (490)
184 3k9i_A BH0479 protein; putativ 98.0 7.2E-06 2.5E-10 62.2 5.6 106 99-208 2-109 (117)
185 1ihg_A Cyclophilin 40; ppiase 98.0 4.6E-05 1.6E-09 70.9 12.1 120 89-214 225-359 (370)
186 3rkv_A Putative peptidylprolyl 98.0 4.7E-05 1.6E-09 61.5 10.2 99 87-186 11-126 (162)
187 1dce_A Protein (RAB geranylger 98.0 0.00097 3.3E-08 65.7 21.2 189 293-511 43-244 (567)
188 1kt0_A FKBP51, 51 kDa FK506-bi 98.0 0.00014 4.8E-09 69.9 15.0 88 349-461 317-405 (457)
189 2xev_A YBGF; tetratricopeptide 97.9 0.00025 8.6E-09 54.4 13.5 96 282-378 5-105 (129)
190 3rkv_A Putative peptidylprolyl 97.9 0.00016 5.4E-09 58.3 12.6 67 349-440 63-129 (162)
191 1dce_A Protein (RAB geranylger 97.9 0.00021 7.4E-09 70.4 15.8 174 67-249 44-244 (567)
192 2l6j_A TPR repeat-containing p 97.9 3.9E-05 1.3E-09 57.2 7.8 98 405-522 3-107 (111)
193 1ihg_A Cyclophilin 40; ppiase 97.9 0.00017 5.8E-09 67.1 13.6 89 348-461 272-361 (370)
194 2if4_A ATFKBP42; FKBP-like, al 97.9 3.8E-05 1.3E-09 70.6 8.6 129 88-224 180-327 (338)
195 2hr2_A Hypothetical protein; a 97.8 0.00024 8.3E-09 55.9 11.2 63 159-224 59-130 (159)
196 2hr2_A Hypothetical protein; a 97.8 0.00019 6.4E-09 56.6 10.5 97 89-186 13-131 (159)
197 1klx_A Cysteine rich protein B 97.8 0.00086 3E-08 52.2 14.4 111 293-436 9-127 (138)
198 1klx_A Cysteine rich protein B 97.8 0.00059 2E-08 53.2 13.1 108 67-185 10-125 (138)
199 2kat_A Uncharacterized protein 97.8 8.2E-05 2.8E-09 55.9 7.7 80 70-151 3-82 (115)
200 2if4_A ATFKBP42; FKBP-like, al 97.7 0.00013 4.4E-09 67.1 10.0 145 279-467 179-325 (338)
201 2l6j_A TPR repeat-containing p 97.7 3.2E-05 1.1E-09 57.7 4.0 93 86-179 3-100 (111)
202 1zu2_A Mitochondrial import re 97.7 8.3E-05 2.8E-09 58.4 6.2 96 65-164 15-131 (158)
203 2kat_A Uncharacterized protein 97.6 0.00034 1.2E-08 52.4 8.8 79 105-185 3-81 (115)
204 1na3_A Designed protein CTPR2; 97.5 0.00052 1.8E-08 48.6 8.7 63 88-151 10-72 (91)
205 1na3_A Designed protein CTPR2; 97.4 0.0014 4.6E-08 46.4 9.7 81 122-208 9-89 (91)
206 3qww_A SET and MYND domain-con 97.4 0.00073 2.5E-08 63.8 9.9 92 418-520 310-409 (433)
207 1zu2_A Mitochondrial import re 97.4 0.0006 2E-08 53.6 7.6 87 98-186 13-120 (158)
208 3ma5_A Tetratricopeptide repea 97.4 0.0025 8.7E-08 46.1 10.7 65 405-470 6-70 (100)
209 3ma5_A Tetratricopeptide repea 97.3 0.00066 2.3E-08 49.4 7.4 61 123-184 8-68 (100)
210 3mkq_A Coatomer beta'-subunit; 97.2 0.01 3.5E-07 61.8 17.2 169 283-515 633-805 (814)
211 3qwp_A SET and MYND domain-con 97.2 0.0015 5E-08 61.9 9.5 105 164-268 294-408 (429)
212 3qww_A SET and MYND domain-con 97.1 0.00077 2.6E-08 63.6 7.2 94 208-307 310-410 (433)
213 3qwp_A SET and MYND domain-con 97.1 0.0013 4.5E-08 62.2 8.6 99 203-307 294-399 (429)
214 3ly7_A Transcriptional activat 97.0 0.027 9.2E-07 51.1 15.9 142 311-469 191-338 (372)
215 3ly7_A Transcriptional activat 96.8 0.036 1.2E-06 50.2 14.5 144 83-235 190-347 (372)
216 3u64_A Protein TP_0956; tetrat 96.7 0.099 3.4E-06 45.4 16.0 63 405-469 198-268 (301)
217 2kc7_A BFR218_protein; tetratr 96.5 0.0042 1.4E-07 44.7 5.6 57 95-152 8-65 (99)
218 1pc2_A Mitochondria fission pr 96.5 0.038 1.3E-06 42.8 10.8 83 386-470 13-100 (152)
219 2kc7_A BFR218_protein; tetratr 96.4 0.014 4.7E-07 41.8 7.8 58 412-470 6-64 (99)
220 3bee_A Putative YFRE protein; 96.4 0.051 1.7E-06 38.4 10.3 47 138-185 25-71 (93)
221 3mkq_A Coatomer beta'-subunit; 96.3 0.039 1.3E-06 57.3 13.8 117 96-249 608-725 (814)
222 3u64_A Protein TP_0956; tetrat 96.3 0.23 7.7E-06 43.2 15.6 115 232-354 155-282 (301)
223 2v5f_A Prolyl 4-hydroxylase su 96.2 0.051 1.8E-06 39.4 9.8 67 404-470 3-75 (104)
224 3mkq_B Coatomer subunit alpha; 96.2 0.3 1E-05 38.9 14.6 130 164-340 12-141 (177)
225 1pc2_A Mitochondria fission pr 96.0 0.09 3.1E-06 40.8 10.7 97 295-395 14-115 (152)
226 3ffl_A Anaphase-promoting comp 95.7 0.065 2.2E-06 41.9 8.8 121 409-529 23-158 (167)
227 3bee_A Putative YFRE protein; 95.6 0.12 4E-06 36.5 9.4 68 154-226 3-73 (93)
228 2v5f_A Prolyl 4-hydroxylase su 95.6 0.1 3.6E-06 37.7 9.3 62 125-186 8-75 (104)
229 3lvg_A Clathrin heavy chain 1; 95.3 0.0017 5.7E-08 60.2 -1.5 244 87-369 54-324 (624)
230 1wy6_A Hypothetical protein ST 95.2 0.7 2.4E-05 34.6 14.9 146 159-346 7-157 (172)
231 3mkq_B Coatomer subunit alpha; 95.0 1 3.5E-05 35.8 16.3 46 290-341 16-61 (177)
232 1nzn_A CGI-135 protein, fissio 94.1 0.56 1.9E-05 34.9 9.7 66 404-470 33-103 (126)
233 2ff4_A Probable regulatory pro 93.1 5.4 0.00019 36.8 19.2 85 408-505 173-257 (388)
234 1nzn_A CGI-135 protein, fissio 92.8 0.84 2.9E-05 33.9 8.8 83 103-186 17-103 (126)
235 4ady_A RPN2, 26S proteasome re 92.7 10 0.00036 39.2 21.0 257 97-377 384-657 (963)
236 3lvg_A Clathrin heavy chain 1; 92.6 0.017 5.7E-07 53.8 -0.7 193 66-292 68-276 (624)
237 4h7y_A Dual specificity protei 92.5 2 6.7E-05 33.0 10.4 55 170-229 73-127 (161)
238 4h7y_A Dual specificity protei 92.2 2 7E-05 32.9 10.2 54 293-347 74-127 (161)
239 4gns_B Protein CSD3, chitin bi 91.9 1 3.5E-05 45.4 10.9 49 472-521 351-399 (754)
240 4gns_B Protein CSD3, chitin bi 91.3 1 3.6E-05 45.3 10.3 126 91-223 252-398 (754)
241 3o48_A Mitochondria fission 1 90.7 2.8 9.6E-05 31.3 9.5 71 438-522 37-107 (134)
242 1v54_E Cytochrome C oxidase po 90.7 1.3 4.4E-05 31.1 7.1 47 424-470 28-74 (109)
243 1wy6_A Hypothetical protein ST 90.6 4.3 0.00015 30.5 14.9 64 405-469 90-153 (172)
244 4b4t_P 26S proteasome regulato 90.5 12 0.0004 35.3 18.0 197 292-519 29-244 (445)
245 2ff4_A Probable regulatory pro 89.9 1.3 4.6E-05 40.9 9.1 110 121-235 111-249 (388)
246 1y8m_A FIS1; mitochondria, unk 89.5 5.6 0.00019 30.2 11.5 73 438-524 36-108 (144)
247 2wpv_A GET4, UPF0363 protein Y 88.6 12 0.00042 33.0 20.6 168 281-485 35-215 (312)
248 4fhn_B Nucleoporin NUP120; pro 88.0 6.9 0.00024 42.2 14.2 151 90-248 815-988 (1139)
249 3o48_A Mitochondria fission 1 87.1 7.8 0.00027 29.0 10.0 70 401-470 35-107 (134)
250 1zbp_A Hypothetical protein VP 87.0 1.8 6.2E-05 37.0 7.2 51 99-150 9-59 (273)
251 2y69_E Cytochrome C oxidase su 86.4 3.1 0.00011 31.0 7.1 32 403-434 85-116 (152)
252 4fhn_B Nucleoporin NUP120; pro 85.9 22 0.00077 38.3 16.7 87 280-368 900-990 (1139)
253 1v54_E Cytochrome C oxidase po 85.8 7.3 0.00025 27.4 10.7 64 386-450 25-88 (109)
254 3ffl_A Anaphase-promoting comp 85.2 2.3 7.9E-05 33.3 6.3 22 284-305 127-148 (167)
255 3txn_A 26S proteasome regulato 85.1 23 0.00079 32.5 14.2 93 284-376 104-208 (394)
256 2y69_E Cytochrome C oxidase su 83.3 12 0.00042 27.9 10.7 50 421-470 68-117 (152)
257 3txn_A 26S proteasome regulato 80.3 36 0.0012 31.3 18.1 168 89-257 21-207 (394)
258 4b4t_R RPN7, 26S proteasome re 79.4 12 0.0004 35.1 10.2 65 158-224 132-196 (429)
259 1zbp_A Hypothetical protein VP 78.9 30 0.001 29.6 13.9 55 166-225 6-60 (273)
260 3lpz_A GET4 (YOR164C homolog); 78.7 36 0.0012 30.4 21.9 170 281-485 37-214 (336)
261 1y8m_A FIS1; mitochondria, unk 78.7 19 0.00066 27.3 11.7 68 403-470 36-106 (144)
262 1qsa_A Protein (soluble lytic 77.8 57 0.0019 32.2 29.2 29 406-434 319-347 (618)
263 4b4t_R RPN7, 26S proteasome re 77.7 18 0.0006 33.9 10.9 63 408-470 133-197 (429)
264 3esl_A Checkpoint serine/threo 77.1 24 0.00083 28.6 9.8 56 364-440 94-149 (202)
265 4b4t_P 26S proteasome regulato 75.6 54 0.0018 30.8 20.7 178 275-470 52-247 (445)
266 4ady_A RPN2, 26S proteasome re 75.1 83 0.0028 32.7 28.8 53 289-342 534-588 (963)
267 2wpv_A GET4, UPF0363 protein Y 74.1 46 0.0016 29.3 21.1 117 198-338 35-158 (312)
268 3esl_A Checkpoint serine/threo 68.7 46 0.0016 27.0 11.9 73 311-383 74-149 (202)
269 1wdy_A 2-5A-dependent ribonucl 68.7 37 0.0012 29.0 10.3 119 93-229 8-131 (285)
270 1k1a_A B-cell lymphoma 3-encod 65.6 56 0.0019 27.0 10.8 27 94-120 13-39 (241)
271 4a1g_A Mitotic checkpoint seri 64.7 46 0.0016 25.6 9.5 52 368-440 84-135 (152)
272 4b4t_S RPN3, 26S proteasome re 64.7 50 0.0017 31.5 10.4 71 195-268 230-300 (523)
273 4b4t_S RPN3, 26S proteasome re 59.4 1.2E+02 0.0042 28.9 12.0 111 406-518 231-366 (523)
274 2uwj_G Type III export protein 56.4 49 0.0017 23.2 6.6 47 133-185 50-96 (115)
275 2wvi_A Mitotic checkpoint seri 55.7 72 0.0024 24.9 9.4 54 368-442 79-132 (164)
276 2p58_C Putative type III secre 55.6 51 0.0017 23.2 7.4 14 98-111 51-64 (116)
277 3kea_A K1L; tropism, ANK repea 54.6 51 0.0017 28.5 8.5 9 67-75 11-19 (285)
278 1ug3_A EIF4GI, eukaryotic prot 51.9 59 0.002 29.1 8.5 25 282-306 14-38 (339)
279 3bu8_A Telomeric repeat-bindin 49.6 1.1E+02 0.0036 25.1 11.1 16 253-268 87-102 (235)
280 2ion_A PDCD4, programmed cell 48.3 86 0.003 24.1 7.7 64 318-382 13-78 (152)
281 3eu9_A Huntingtin-interacting 47.6 1E+02 0.0036 25.1 9.2 19 322-340 215-233 (240)
282 4aez_C MAD3, mitotic spindle c 46.7 53 0.0018 27.2 6.5 36 405-440 149-184 (223)
283 1k1a_A B-cell lymphoma 3-encod 45.9 84 0.0029 25.8 8.3 45 130-174 14-60 (241)
284 1wdy_A 2-5A-dependent ribonucl 45.4 95 0.0032 26.3 8.8 209 128-368 8-235 (285)
285 3eu9_A Huntingtin-interacting 44.4 81 0.0028 25.8 8.0 14 360-373 218-231 (240)
286 3kea_A K1L; tropism, ANK repea 44.4 1.1E+02 0.0037 26.3 9.0 16 129-144 66-81 (285)
287 2fe3_A Peroxide operon regulat 44.3 1E+02 0.0035 23.3 8.0 58 113-171 13-70 (145)
288 2rfa_A Transient receptor pote 44.2 98 0.0033 25.3 8.4 22 288-309 160-181 (232)
289 2uwj_G Type III export protein 43.9 82 0.0028 22.1 7.2 52 411-468 44-95 (115)
290 2nsz_A Programmed cell death p 43.2 99 0.0034 22.9 9.1 64 318-382 11-76 (129)
291 3bu8_A Telomeric repeat-bindin 43.0 1.4E+02 0.0047 24.5 9.5 32 498-529 119-150 (235)
292 4aez_C MAD3, mitotic spindle c 42.7 1.3E+02 0.0043 24.9 8.2 60 423-482 131-195 (223)
293 4a1g_A Mitotic checkpoint seri 42.3 1.1E+02 0.0039 23.4 9.7 50 298-347 84-134 (152)
294 3pvs_A Replication-associated 42.1 2.2E+02 0.0075 26.6 13.3 22 169-190 267-288 (447)
295 3ygs_P Procaspase 9; apoptosis 41.9 43 0.0015 23.3 4.7 34 102-139 52-85 (97)
296 2yru_A Steroid receptor RNA ac 41.3 1E+02 0.0035 22.5 7.1 43 260-308 48-90 (118)
297 1mzb_A Ferric uptake regulatio 40.6 1.1E+02 0.0038 22.8 7.7 58 113-171 9-67 (136)
298 2xig_A Ferric uptake regulatio 39.6 1.1E+02 0.0037 23.4 7.1 62 302-364 15-76 (150)
299 2xig_A Ferric uptake regulatio 39.1 1.3E+02 0.0043 23.0 7.6 45 127-171 31-75 (150)
300 2w57_A Ferric uptake regulatio 38.8 1.3E+02 0.0044 22.9 7.8 58 113-171 8-66 (150)
301 3eyy_A Putative iron uptake re 38.7 1E+02 0.0036 23.3 6.9 57 113-171 10-66 (145)
302 2wvi_A Mitotic checkpoint seri 38.6 1.4E+02 0.0047 23.3 9.4 69 311-382 60-129 (164)
303 1n11_A Ankyrin; clathrin, BAND 38.0 1.6E+02 0.0056 27.0 9.7 80 93-181 50-134 (437)
304 2d2s_A Exocyst complex compone 36.8 1.5E+02 0.005 24.8 8.0 42 297-341 77-118 (235)
305 4ets_A Ferric uptake regulatio 36.6 62 0.0021 25.2 5.4 58 114-172 25-84 (162)
306 3kae_A CDC27, possible protein 36.4 1.6E+02 0.0053 23.3 7.2 29 196-224 114-142 (242)
307 2p58_C Putative type III secre 36.3 1.1E+02 0.0038 21.5 8.8 51 411-467 45-95 (116)
308 3jxi_A Vanilloid receptor-rela 35.9 33 0.0011 29.0 4.2 22 321-342 229-250 (260)
309 2fe3_A Peroxide operon regulat 35.4 95 0.0033 23.5 6.2 62 77-139 12-73 (145)
310 2ijq_A Hypothetical protein; s 34.5 1.6E+02 0.0055 22.8 8.4 52 326-377 44-103 (161)
311 3bge_A Predicted ATPase; struc 34.4 1.8E+02 0.0062 23.4 8.5 19 136-154 21-39 (201)
312 2b7e_A PRE-mRNA processing pro 34.3 41 0.0014 20.9 3.0 29 69-97 3-31 (59)
313 3qil_A Clathrin heavy chain 1; 34.3 17 0.0006 26.4 1.6 50 281-333 34-83 (125)
314 2cos_A Serine/threonine protei 34.1 35 0.0012 20.6 2.6 39 479-522 11-51 (54)
315 1mzb_A Ferric uptake regulatio 33.3 98 0.0033 23.1 5.9 61 78-139 9-70 (136)
316 2ijq_A Hypothetical protein; s 32.3 1.8E+02 0.006 22.6 9.1 61 409-470 36-104 (161)
317 3ltm_A Alpha-REP4; protein eng 32.2 1.9E+02 0.0066 23.1 18.7 142 85-246 31-172 (211)
318 2f6m_A Suppressor protein STP2 31.3 77 0.0026 20.1 4.0 45 89-134 4-48 (65)
319 2ion_A PDCD4, programmed cell 30.9 1.8E+02 0.0061 22.3 8.1 64 160-228 12-77 (152)
320 3ctd_A Putative ATPase, AAA fa 30.2 2.2E+02 0.0077 23.2 9.6 96 163-263 38-141 (213)
321 2zu6_B Programmed cell death p 30.1 2.8E+02 0.0096 24.3 10.8 66 317-383 169-236 (307)
322 2w57_A Ferric uptake regulatio 30.0 1.1E+02 0.0038 23.3 5.8 62 77-139 7-69 (150)
323 4ets_A Ferric uptake regulatio 29.7 1.6E+02 0.0055 22.8 6.7 47 92-138 37-85 (162)
324 3lpz_A GET4 (YOR164C homolog); 29.6 3E+02 0.01 24.5 26.4 116 198-337 37-159 (336)
325 2fu4_A Ferric uptake regulatio 29.6 1.2E+02 0.0041 19.9 7.5 58 113-171 8-66 (83)
326 3mkr_B Coatomer subunit alpha; 28.8 2.7E+02 0.0094 24.5 8.5 78 451-528 112-233 (320)
327 1ug3_A EIF4GI, eukaryotic prot 27.9 1.8E+02 0.0063 25.9 7.7 25 160-184 14-38 (339)
328 3hra_A Ankyrin repeat family p 27.4 1.3E+02 0.0044 23.8 6.2 14 299-312 158-171 (201)
329 3eyy_A Putative iron uptake re 27.3 97 0.0033 23.5 5.0 61 77-139 9-69 (145)
330 2o03_A Probable zinc uptake re 27.0 77 0.0026 23.5 4.3 45 93-137 16-60 (131)
331 3t8k_A Uncharacterized protein 26.9 2.3E+02 0.0079 22.3 7.8 171 129-314 10-186 (186)
332 1oai_A Nuclear RNA export fact 26.8 54 0.0018 20.3 2.7 23 100-122 33-56 (59)
333 3mwm_A ZUR, putative metal upt 26.4 70 0.0024 24.0 4.0 44 93-136 19-62 (139)
334 3t5v_B Nuclear mRNA export pro 26.1 4.1E+02 0.014 24.9 13.3 111 407-518 177-320 (455)
335 3kae_A CDC27, possible protein 25.7 2.5E+02 0.0084 22.2 14.4 112 414-525 70-240 (242)
336 4gq2_M Nucleoporin NUP120; bet 25.0 5.8E+02 0.02 26.7 11.8 108 320-435 816-926 (950)
337 2nsz_A Programmed cell death p 24.2 2.2E+02 0.0074 21.0 9.4 64 160-228 10-75 (129)
338 4gq2_M Nucleoporin NUP120; bet 24.1 2.4E+02 0.0082 29.6 8.7 132 92-245 815-950 (950)
339 2o03_A Probable zinc uptake re 23.1 1.6E+02 0.0056 21.6 5.5 49 200-248 14-62 (131)
340 3mwm_A ZUR, putative metal upt 23.0 1.6E+02 0.0055 22.0 5.5 47 126-172 17-63 (139)
341 2r9g_A AAA ATPase, central reg 22.6 3.1E+02 0.011 22.2 9.8 64 90-154 14-85 (204)
342 3bqo_A Telomeric repeat-bindin 22.1 1.1E+02 0.0039 24.5 4.4 19 96-114 126-144 (211)
343 3jxi_A Vanilloid receptor-rela 21.9 1.2E+02 0.0041 25.3 5.3 28 203-230 9-36 (260)
344 2r9g_A AAA ATPase, central reg 21.6 3.2E+02 0.011 22.1 9.6 66 124-190 13-86 (204)
345 3bqo_A Telomeric repeat-bindin 21.5 41 0.0014 27.0 1.8 30 498-527 122-151 (211)
346 3f3f_C Nucleoporin NUP85; stru 21.4 2.7E+02 0.0093 26.9 7.6 69 141-215 500-568 (570)
347 1wgl_A TOLL-interacting protei 21.4 81 0.0028 19.5 2.8 49 68-121 9-57 (59)
348 3aji_A 26S proteasome non-ATPa 21.3 3.2E+02 0.011 21.9 9.3 19 94-112 10-28 (231)
349 3bge_A Predicted ATPase; struc 21.2 3.3E+02 0.011 22.0 8.2 55 99-153 19-78 (201)
350 2rpa_A Katanin P60 ATPase-cont 21.1 1.1E+02 0.0037 20.3 3.5 24 447-470 18-41 (78)
351 3f3f_C Nucleoporin NUP85; stru 20.8 2.2E+02 0.0074 27.5 6.8 87 88-176 480-568 (570)
352 3e3v_A Regulatory protein RECX 20.3 3.2E+02 0.011 21.5 9.8 51 389-440 51-101 (177)
353 2h7o_A Protein kinase YPKA; YO 20.3 3.8E+02 0.013 22.4 8.0 86 435-521 153-256 (303)
354 3pvs_A Replication-associated 20.1 5.3E+02 0.018 24.0 13.3 48 67-116 166-221 (447)
355 3qil_A Clathrin heavy chain 1; 20.0 91 0.0031 22.8 3.1 52 89-143 34-85 (125)
No 1
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=2.2e-35 Score=298.81 Aligned_cols=436 Identities=9% Similarity=-0.064 Sum_probs=236.9
Q ss_pred CHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCcchHHHHHH
Q 038190 67 ELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALG 146 (531)
Q Consensus 67 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 146 (531)
.+..+...+..+ +.++...|+.++..|.+.|++++|+.+|++|... .|+..++..++.+|.+.|++++|..+|+
T Consensus 68 ~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 141 (597)
T 2xpi_A 68 SFLKERNAQNTD----SLSREDYLRLWRHDALMQQQYKCAAFVGEKVLDI--TGNPNDAFWLAQVYCCTGDYARAKCLLT 141 (597)
T ss_dssp ------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ccCCCCCccccc----hHHHHHHHHHHHHHHHHccCchHHHHHHHHHHhh--CCCchHHHHHHHHHHHcCcHHHHHHHHH
Confidence 344444444433 3345555666666666666666666666666532 3455555566666666666666666666
Q ss_pred HHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcC-----------CCCCCCCcHHhHHHHHHHHHhcCChhHH
Q 038190 147 RILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFD-----------CRPNVIPNVICYASIIDGLCKDGFVNKV 215 (531)
Q Consensus 147 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~-----------~~~~~~~~~~~~~~l~~~~~~~~~~~~a 215 (531)
.+... +++..+++.++.+|.+.|++++|+++|+++.... ...+...+..+|+.++.+|.+.|++++|
T Consensus 142 ~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 219 (597)
T 2xpi_A 142 KEDLY--NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRA 219 (597)
T ss_dssp HTCGG--GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHhcc--ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHH
Confidence 55432 3455566666666666666666666665321110 0000012355566666666666666666
Q ss_pred HHHHHHHhhCCCCCCHhhHHHHHHHH-------------------------------HhcCChhhhhcchHHHHHHHHHH
Q 038190 216 RVLFLDMKGRGIYPDAFVYNSLIRVY-------------------------------CCAVNWEDAKGNTSAALELHEEF 264 (531)
Q Consensus 216 ~~~~~~m~~~g~~p~~~~~~~li~~~-------------------------------~~~~~~~~a~~~~~~a~~~~~~~ 264 (531)
.++|++|.+.+.. +...+..+...+ ...+..-...+.+++|+++|+.+
T Consensus 220 ~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~ 298 (597)
T 2xpi_A 220 KECYKEALMVDAK-CYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSI 298 (597)
T ss_dssp HHHHHHHHHHCTT-CHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHhCch-hhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHh
Confidence 6666666543211 222222221100 00011111112223333355544
Q ss_pred HhCCCCCCccccCCHhhHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 038190 265 VNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEG 344 (531)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g 344 (531)
... +++..+++.++.+|.+.|++++|.++|+++.+.+ +.+..++..++.+|.+.|++++|..+++++.+..
T Consensus 299 ~~~--------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 369 (597)
T 2xpi_A 299 NGL--------EKSSDLLLCKADTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH 369 (597)
T ss_dssp TTG--------GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred hcC--------CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC
Confidence 331 2455555555666666666666666665555443 1244555555555555555555555555555432
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--------------cccHHHHHHHHHHHHhCCCCCCHHHHH
Q 038190 345 CIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD--------------NSCILEAAELFRTLHNTKFELDLTVFN 410 (531)
Q Consensus 345 ~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~--------------~~~~~~a~~~~~~~~~~~~~~~~~~~~ 410 (531)
. .+..+|+.++..|.+.|++++|.++|+++.+.. |+ .++.++|+++|+.+.+.+. .+..+|.
T Consensus 370 ~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~ 445 (597)
T 2xpi_A 370 P-EKAVTWLAVGIYYLCVNKISEARRYFSKSSTMD--PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQ-GTHLPYL 445 (597)
T ss_dssp T-TSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTT-TCSHHHH
T ss_pred c-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-cchHHHH
Confidence 2 245555555555555555555555555555421 22 4455555555555554432 2556666
Q ss_pred HHHHHHHcCCChHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--------------------
Q 038190 411 CLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK-------------------- 470 (531)
Q Consensus 411 ~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------------------- 470 (531)
.++.+|.+.|++++|.++|+++.+.. +.+..+|+.++.+|.+.|++++|+++|+++.+.
T Consensus 446 ~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~ 524 (597)
T 2xpi_A 446 FLGMQHMQLGNILLANEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGH 524 (597)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHH
Confidence 67777777777777777777666542 235666667777777777777777776666432
Q ss_pred ----HhhHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChhHHHhhHHHhhhcchhh
Q 038190 471 ----IRECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLLPSFLSRNQEE 526 (531)
Q Consensus 471 ----i~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 526 (531)
.|++++|..+++++.+.+ +.+..+|..++.+|.+.|++++|.+.++++...++..
T Consensus 525 ~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~ 583 (597)
T 2xpi_A 525 AYRKLKMYDAAIDALNQGLLLS-TNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNE 583 (597)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCC
Confidence 166677777777777655 3478999999999999999999999999988776543
No 2
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=2.2e-32 Score=276.93 Aligned_cols=411 Identities=12% Similarity=0.041 Sum_probs=351.0
Q ss_pred cCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCcchHHHH
Q 038190 65 EVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVA 144 (531)
Q Consensus 65 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~ 144 (531)
.|++++|+.+|+++... .|+..+|..++.+|.+.|++++|+.+|+++... +++..+++.++.+|.+.|++++|..+
T Consensus 97 ~g~~~~A~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~ 172 (597)
T 2xpi_A 97 QQQYKCAAFVGEKVLDI--TGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLY--NRSSACRYLAAFCLVKLYDWQGALNL 172 (597)
T ss_dssp TTCHHHHHHHHHHHHHH--HCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG--GTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred ccCchHHHHHHHHHHhh--CCCchHHHHHHHHHHHcCcHHHHHHHHHHHhcc--ccchhHHHHHHHHHHHHhhHHHHHHH
Confidence 45999999999999864 457789999999999999999999999998654 67899999999999999999999999
Q ss_pred HHHHHHC---------------CCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCCCcHHhHHH--------
Q 038190 145 LGRILRK---------------VFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYAS-------- 201 (531)
Q Consensus 145 ~~~~~~~---------------~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~-------- 201 (531)
|+++... +...+..+|+.++.+|.+.|++++|+++|+++...+ |+ +...+..
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--p~---~~~~~~~l~~~~~~~ 247 (597)
T 2xpi_A 173 LGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVD--AK---CYEAFDQLVSNHLLT 247 (597)
T ss_dssp HCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TT---CHHHHHHHHHTTCSC
T ss_pred HhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--ch---hhHHHHHHHHhhccc
Confidence 9853222 223357899999999999999999999999999863 32 3333333
Q ss_pred ------------------------------HHHHHHhcCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChhhhh
Q 038190 202 ------------------------------IIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAK 251 (531)
Q Consensus 202 ------------------------------l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~ 251 (531)
++..|.+.|++++|.++|+++.+. +++..+|..++.+|.+.|++++|.
T Consensus 248 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~ 325 (597)
T 2xpi_A 248 ADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL--EKSSDLLLCKADTLFVRSRFIDVL 325 (597)
T ss_dssp HHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG--GGCHHHHHHHHHHHHHTTCHHHHH
T ss_pred chhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC--CchHHHHHHHHHHHHHhcCHHHHH
Confidence 355667889999999999998875 579999999999999999999999
Q ss_pred cchHHHHHHHHHHHhCCCCCCccccCCHhhHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH
Q 038190 252 GNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRID 331 (531)
Q Consensus 252 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~ 331 (531)
. +|+.+...+ +.+..+++.++.++.+.|++++|..+++.+.+.. +.+..+++.++.+|.+.|+++
T Consensus 326 ~-------~~~~~~~~~-------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~ 390 (597)
T 2xpi_A 326 A-------ITTKILEID-------PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKIS 390 (597)
T ss_dssp H-------HHHHHHHHC-------TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHH
T ss_pred H-------HHHHHHHcC-------cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHH
Confidence 9 888887665 3477889999999999999999999999998653 457889999999999999999
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC------------cccHHHHHHHHHHHHh
Q 038190 332 DARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD------------NSCILEAAELFRTLHN 399 (531)
Q Consensus 332 ~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~------------~~~~~~a~~~~~~~~~ 399 (531)
+|.++|+++.+.... +..+|+.++.+|.+.|++++|.++|+++.+.+.... .+.+++|.++|+.+.+
T Consensus 391 ~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 469 (597)
T 2xpi_A 391 EARRYFSKSSTMDPQ-FGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYA 469 (597)
T ss_dssp HHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 999999999886433 688999999999999999999999999987543222 6889999999999987
Q ss_pred CCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHhhhC----CCCCc--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH---
Q 038190 400 TKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRY----GPEPN--VVTYTVMICGLCIEGGIEKAYDLLPDMEEK--- 470 (531)
Q Consensus 400 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----g~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--- 470 (531)
.... +..+|+.++.+|.+.|++++|.++|+++.+. +..|+ ..+|..++.+|.+.|++++|+++|+++.+.
T Consensus 470 ~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 548 (597)
T 2xpi_A 470 LFQY-DPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTN 548 (597)
T ss_dssp HCCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSC
T ss_pred hCCC-ChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC
Confidence 6543 7899999999999999999999999999875 66888 789999999999999999999999999876
Q ss_pred --------------HhhHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHh
Q 038190 471 --------------IRECLKAIELLHKMAKRYVKPDEITVSILEELLN 504 (531)
Q Consensus 471 --------------i~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 504 (531)
.|++++|..+++++++... .+...+..+..+|.
T Consensus 549 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~l~~~~~ 595 (597)
T 2xpi_A 549 DANVHTAIALVYLHKKIPGLAITHLHESLAISP-NEIMASDLLKRALE 595 (597)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHTTC
T ss_pred ChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCC-CChHHHHHHHHHHh
Confidence 2999999999999998653 35667777776664
No 3
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.97 E-value=1.4e-27 Score=227.99 Aligned_cols=376 Identities=15% Similarity=0.052 Sum_probs=320.4
Q ss_pred cCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCcchHHHH
Q 038190 65 EVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVA 144 (531)
Q Consensus 65 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~ 144 (531)
.|++++|.+.|+.+.+..|. +...+..+...+.+.|++++|...++...+.. +.+..+|..+..++.+.|++++|...
T Consensus 12 ~g~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~ 89 (388)
T 1w3b_A 12 AGDFEAAERHCMQLWRQEPD-NTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQLQEAIEH 89 (388)
T ss_dssp HTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHHHHHH
Confidence 56999999999999987765 66778888888999999999999999998765 66788999999999999999999999
Q ss_pred HHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCCCcHHhHHHHHHHHHhcCChhHHHHHHHHHhh
Q 038190 145 LGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKG 224 (531)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 224 (531)
|+++++..+ .+..+|..+..++...|++++|+..|+++... .|+ +...+..+...+...|++++|...|+++.+
T Consensus 90 ~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~---~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 163 (388)
T 1w3b_A 90 YRHALRLKP-DFIDGYINLAAALVAAGDMEGAVQAYVSALQY--NPD---LYCVRSDLGNLLKALGRLEEAKACYLKAIE 163 (388)
T ss_dssp HHHHHHHCT-TCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHH--CTT---CTHHHHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHcCc-chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCC---cHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 999998753 25668999999999999999999999999986 443 567888899999999999999999999987
Q ss_pred CCCCCCHhhHHHHHHHHHhcCChhhhhcchHHHHHHHHHHHhCCCCCCccccCCHhhHHHHHHHHhcCCCHHHHHHHHHH
Q 038190 225 RGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLD 304 (531)
Q Consensus 225 ~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 304 (531)
.. +-+..+|..+...+...|++++|.. .|+++...+ +.+...+..+...+...|++++|...|++
T Consensus 164 ~~-p~~~~~~~~l~~~~~~~g~~~~A~~-------~~~~al~~~-------p~~~~~~~~lg~~~~~~~~~~~A~~~~~~ 228 (388)
T 1w3b_A 164 TQ-PNFAVAWSNLGCVFNAQGEIWLAIH-------HFEKAVTLD-------PNFLDAYINLGNVLKEARIFDRAVAAYLR 228 (388)
T ss_dssp HC-TTCHHHHHHHHHHHHTTTCHHHHHH-------HHHHHHHHC-------TTCHHHHHHHHHHHHTTTCTTHHHHHHHH
T ss_pred hC-CCCHHHHHHHHHHHHHcCCHHHHHH-------HHHHHHhcC-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 53 2257889999999999999999888 666666544 34577899999999999999999999999
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCc
Q 038190 305 MKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDN 384 (531)
Q Consensus 305 ~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 384 (531)
..+.. +.+..++..+..+|.+.|++++|...|+++.+.+.. +..+|..+...|.+.|++++|...|+++.+.. |
T Consensus 229 al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p-- 302 (388)
T 1w3b_A 229 ALSLS-PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPH-FPDAYCNLANALKEKGSVAEAEDCYNTALRLC--P-- 302 (388)
T ss_dssp HHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSS-CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC--T--
T ss_pred HHhhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--c--
Confidence 88763 336788999999999999999999999999987543 57789999999999999999999999998742 3
Q ss_pred ccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHcCCHHHHHHHH
Q 038190 385 SCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLL 464 (531)
Q Consensus 385 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 464 (531)
.+..++..++..+...|++++|...++++.+.. +.+..++..+..+|.+.|++++|++.|
T Consensus 303 -------------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~ 362 (388)
T 1w3b_A 303 -------------------THADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHY 362 (388)
T ss_dssp -------------------TCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHHHHH
T ss_pred -------------------ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 378899999999999999999999999999852 345788999999999999999998877
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhccCC
Q 038190 465 PDMEEKIRECLKAIELLHKMAKRYVKP-DEITVSILEELLNKDEN 508 (531)
Q Consensus 465 ~~~~~~i~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~ 508 (531)
+++.+ ..| +...+..+..++.+.|+
T Consensus 363 ~~a~~-------------------~~p~~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 363 KEAIR-------------------ISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HHHHT-------------------TCTTCHHHHHHHHHHHHHTCC
T ss_pred HHHHh-------------------hCCCCHHHHHhHHHHHHHccC
Confidence 66543 234 45677778887776653
No 4
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.97 E-value=2.4e-30 Score=250.73 Aligned_cols=214 Identities=14% Similarity=0.201 Sum_probs=183.0
Q ss_pred HHHHHHHHHHHcCCCCCCCCcHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChhhhh--c
Q 038190 175 EASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAK--G 252 (531)
Q Consensus 175 ~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~--~ 252 (531)
.+..+.+++.+.+.... ....++.+|.+|++.|++++|.++|++|.+.|+.||..||+.+|.+|++.+...++. .
T Consensus 8 ~~e~L~~~~~~k~~~~s---pe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~ 84 (501)
T 4g26_A 8 PSENLSRKAKKKAIQQS---PEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNP 84 (501)
T ss_dssp ----------------C---HHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCH
T ss_pred hHHHHHHHHHHhcccCC---CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcc
Confidence 34555566665544431 345688899999999999999999999999999999999999999999887765543 2
Q ss_pred chHHHHHHHHHHHhCCCCCCccccCCHhhHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 038190 253 NTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDD 332 (531)
Q Consensus 253 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~ 332 (531)
.++.|.++|++|...| +.||..||+++|.+|++.|++++|.++|++|.+.|+.||..||+.+|.+|++.|++++
T Consensus 85 ~l~~A~~lf~~M~~~G------~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~ 158 (501)
T 4g26_A 85 GLSRGFDIFKQMIVDK------VVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADK 158 (501)
T ss_dssp HHHHHHHHHHHHHHTT------CCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHH
T ss_pred hHHHHHHHHHHHHHhC------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHH
Confidence 4677888999999999 9999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 038190 333 ARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCL 412 (531)
Q Consensus 333 a~~~~~~~~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 412 (531)
|.++|++|.+.|+.||..+|++||.+|++.|++++|.++|++|.+.|..| +..||+.+
T Consensus 159 A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~p----------------------s~~T~~~l 216 (501)
T 4g26_A 159 AYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQV----------------------SKSTFDMI 216 (501)
T ss_dssp HHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSB----------------------CHHHHHHH
T ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCc----------------------CHHHHHHH
Confidence 99999999999999999999999999999999999999999999988766 88899999
Q ss_pred HHHHHcC
Q 038190 413 VDGLCKS 419 (531)
Q Consensus 413 ~~~~~~~ 419 (531)
+..|+..
T Consensus 217 ~~~F~s~ 223 (501)
T 4g26_A 217 EEWFKSE 223 (501)
T ss_dssp HHHHHSH
T ss_pred HHHHhcC
Confidence 9988763
No 5
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.97 E-value=3.4e-30 Score=249.72 Aligned_cols=207 Identities=11% Similarity=0.123 Sum_probs=180.4
Q ss_pred hHHHHHHHHHhhCCCCCCH-hhHHHHHHHHHhcCChhhhhcchHHHHHHHHHHHhCCCCCCccccCCHhhHHHHHHHHhc
Q 038190 213 NKVRVLFLDMKGRGIYPDA-FVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCK 291 (531)
Q Consensus 213 ~~a~~~~~~m~~~g~~p~~-~~~~~li~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 291 (531)
..+..+.+++.+.+....+ ..++.+|++|++.|++++|.. +|++|...| +.||..+|+.+|.+|++
T Consensus 7 s~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~-------lf~~M~~~G------v~pd~~tyn~Li~~c~~ 73 (501)
T 4g26_A 7 SPSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALR-------LYDEARRNG------VQLSQYHYNVLLYVCSL 73 (501)
T ss_dssp -----------------CHHHHHHHHHHHTTTSCCHHHHHH-------HHHHHHHHT------CCCCHHHHHHHHHHHTT
T ss_pred chHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHH-------HHHHHHHcC------CCCCHhHHHHHHHHHHh
Confidence 4456666778777766544 468889999999999999999 999999999 99999999999999987
Q ss_pred CCC---------HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc
Q 038190 292 DVL---------VDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKI 362 (531)
Q Consensus 292 ~~~---------~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~ 362 (531)
.+. +++|.++|++|.+.|+.||..||++||.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.
T Consensus 74 ~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~ 153 (501)
T 4g26_A 74 AEAATESSPNPGLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRK 153 (501)
T ss_dssp CCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHT
T ss_pred CCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHC
Confidence 664 68899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHhhhCCCCCcHH
Q 038190 363 EKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVV 442 (531)
Q Consensus 363 ~~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~ 442 (531)
|++++|.++|++|.+.|+.| |..+|++||.+|++.|++++|.+++++|.+.|..|+..
T Consensus 154 g~~~~A~~l~~~M~~~G~~P----------------------d~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~ 211 (501)
T 4g26_A 154 GDADKAYEVDAHMVESEVVP----------------------EEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKS 211 (501)
T ss_dssp TCHHHHHHHHHHHHHTTCCC----------------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHH
T ss_pred CCHHHHHHHHHHHHhcCCCC----------------------CHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHH
Confidence 99999999999999988766 89999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHc
Q 038190 443 TYTVMICGLCIE 454 (531)
Q Consensus 443 ~~~~l~~~~~~~ 454 (531)
||+.++..+...
T Consensus 212 T~~~l~~~F~s~ 223 (501)
T 4g26_A 212 TFDMIEEWFKSE 223 (501)
T ss_dssp HHHHHHHHHHSH
T ss_pred HHHHHHHHHhcC
Confidence 999999988754
No 6
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.97 E-value=1.1e-26 Score=221.85 Aligned_cols=367 Identities=12% Similarity=0.012 Sum_probs=311.1
Q ss_pred HHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCcchHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCC
Q 038190 93 LLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGK 172 (531)
Q Consensus 93 li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 172 (531)
+...+.+.|++++|++.++++.+.. +.+...+..+...+...|+++.|...++..++.. +.+..+|..+..+|.+.|+
T Consensus 5 ~a~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~ 82 (388)
T 1w3b_A 5 LAHREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQ 82 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCC
Confidence 3456778999999999999998774 4556677888888999999999999999998875 3477899999999999999
Q ss_pred hHHHHHHHHHHHHcCCCCCCCCcHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChhhhhc
Q 038190 173 FTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKG 252 (531)
Q Consensus 173 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~ 252 (531)
+++|+..|+++... .|+ +..+|..+..++...|++++|...|+++.+.... +...+..+...+...|++++|..
T Consensus 83 ~~~A~~~~~~al~~--~p~---~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~ 156 (388)
T 1w3b_A 83 LQEAIEHYRHALRL--KPD---FIDGYINLAAALVAAGDMEGAVQAYVSALQYNPD-LYCVRSDLGNLLKALGRLEEAKA 156 (388)
T ss_dssp HHHHHHHHHHHHHH--CTT---CHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTT-CTHHHHHHHHHHHTTSCHHHHHH
T ss_pred HHHHHHHHHHHHHc--Ccc---hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHccCHHHHHH
Confidence 99999999999886 453 6778999999999999999999999999875322 45567778888888899988888
Q ss_pred chHHHHHHHHHHHhCCCCCCccccCCHhhHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 038190 253 NTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDD 332 (531)
Q Consensus 253 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~ 332 (531)
.|+.+.... +.+..+|..+...+...|++++|...|+++.+.+ +.+...+..+...+...|++++
T Consensus 157 -------~~~~al~~~-------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~ 221 (388)
T 1w3b_A 157 -------CYLKAIETQ-------PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDR 221 (388)
T ss_dssp -------HHHHHHHHC-------TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTH
T ss_pred -------HHHHHHHhC-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHH
Confidence 676666654 3457889999999999999999999999999864 3357788999999999999999
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 038190 333 ARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCL 412 (531)
Q Consensus 333 a~~~~~~~~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 412 (531)
|...|++..+..+. +..++..+...|...|++++|...|+++.+.. |+ +..+|..+
T Consensus 222 A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~---------------------~~~~~~~l 277 (388)
T 1w3b_A 222 AVAAYLRALSLSPN-HAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ--PH---------------------FPDAYCNL 277 (388)
T ss_dssp HHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC--SS---------------------CHHHHHHH
T ss_pred HHHHHHHHHhhCcC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CC---------------------CHHHHHHH
Confidence 99999999887543 67889999999999999999999999998743 32 67889999
Q ss_pred HHHHHcCCChHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCC
Q 038190 413 VDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECLKAIELLHKMAKRYVKPD 492 (531)
Q Consensus 413 ~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~i~~~~~a~~~~~~~~~~~~~~~ 492 (531)
+.+|.+.|++++|...|+++.+.. +.+..+|..+...+...|++++|++.++++.+ . .+.+
T Consensus 278 ~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~-----------------~-~p~~ 338 (388)
T 1w3b_A 278 ANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKREQGNIEEAVRLYRKALE-----------------V-FPEF 338 (388)
T ss_dssp HHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTT-----------------S-CTTC
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-----------------c-CCCc
Confidence 999999999999999999999852 45788999999999999999999877765543 1 2345
Q ss_pred HHHHHHHHHHHhccCChhHHHhhHHHhhhcchh
Q 038190 493 EITVSILEELLNKDENCHECMNLLPSFLSRNQE 525 (531)
Q Consensus 493 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 525 (531)
..++..++.+|.+.|++++|.+.++++...++.
T Consensus 339 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~ 371 (388)
T 1w3b_A 339 AAAHSNLASVLQQQGKLQEALMHYKEAIRISPT 371 (388)
T ss_dssp HHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 778999999999999999999999998765543
No 7
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.93 E-value=1.5e-22 Score=197.18 Aligned_cols=333 Identities=11% Similarity=-0.002 Sum_probs=262.9
Q ss_pred HHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCcchHHHHHHH
Q 038190 68 LNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGR 147 (531)
Q Consensus 68 ~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 147 (531)
...+...|..+....|. +...|..+...+.+.|++++|+.+|+++.+.. +.+..++..+..++...|++++|...|++
T Consensus 8 ~~~~~~~~~~~~~~~p~-~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 85 (450)
T 2y4t_A 8 SSGVDLGTENLYFQSMA-DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTK 85 (450)
T ss_dssp ---------------CH-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred cccccccccccccccHH-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 33444555555554443 67789999999999999999999999998764 56788999999999999999999999999
Q ss_pred HHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCCCcH---HhHHHH------------HHHHHhcCCh
Q 038190 148 ILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNV---ICYASI------------IDGLCKDGFV 212 (531)
Q Consensus 148 ~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~---~~~~~l------------~~~~~~~~~~ 212 (531)
+++.++. +..++..+..+|...|++++|...|+++... .|. +. .++..+ ...+...|++
T Consensus 86 al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~---~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 159 (450)
T 2y4t_A 86 VIQLKMD-FTAARLQRGHLLLKQGKLDEAEDDFKKVLKS--NPS---ENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDY 159 (450)
T ss_dssp HHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--CCC---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCH
T ss_pred HHhcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCC---ChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCH
Confidence 9988643 6789999999999999999999999999875 332 44 566655 4448899999
Q ss_pred hHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChhhhhcchHHHHHHHHHHHhCCCCCCccccCCHhhHHHHHHHHhcC
Q 038190 213 NKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKD 292 (531)
Q Consensus 213 ~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 292 (531)
++|...|+++.+.. +.+...+..+..+|...|++++|.. .|+.+.... +.+..++..+..+|...
T Consensus 160 ~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~-------~~~~~~~~~-------~~~~~~~~~l~~~~~~~ 224 (450)
T 2y4t_A 160 TAAIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAIS-------DLKAASKLK-------NDNTEAFYKISTLYYQL 224 (450)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHH-------HHHHHHHHH-------CSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHH-------HHHHHHHhC-------CCCHHHHHHHHHHHHHc
Confidence 99999999998753 3377889999999999999999999 666655543 45678999999999999
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHH------------HHHHHhcCCHHHHHHHHHHHHhcCCCCC----HHHHHHHH
Q 038190 293 VLVDKAKELFLDMKSRGIIPDVVVYSSL------------IDGYCLMGRIDDARKLFVSIESEGCIPD----TSSYNTLI 356 (531)
Q Consensus 293 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l------------l~~~~~~g~~~~a~~~~~~~~~~g~~p~----~~~~~~li 356 (531)
|++++|...|+.+.+.. +.+...+..+ ...|...|++++|...|+++.+.... + ...|..+.
T Consensus 225 g~~~~A~~~~~~~~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~l~ 302 (450)
T 2y4t_A 225 GDHELSLSEVRECLKLD-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPS-IAEYTVRSKERIC 302 (450)
T ss_dssp TCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhC-CChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-chHHHHHHHHHHH
Confidence 99999999999998753 2244445444 78899999999999999999886432 2 44788889
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHhhhCC
Q 038190 357 NSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYG 436 (531)
Q Consensus 357 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g 436 (531)
..+.+.|++++|...++++.+.. |+ +..+|..++.+|...|++++|...|+++.+.
T Consensus 303 ~~~~~~g~~~~A~~~~~~a~~~~--p~---------------------~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~- 358 (450)
T 2y4t_A 303 HCFSKDEKPVEAIRVCSEVLQME--PD---------------------NVNALKDRAEAYLIEEMYDEAIQDYETAQEH- 358 (450)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHC--TT---------------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT-
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC--cc---------------------cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-
Confidence 99999999999999999987642 32 7889999999999999999999999999984
Q ss_pred CCCc-HHHHHHHHHH
Q 038190 437 PEPN-VVTYTVMICG 450 (531)
Q Consensus 437 ~~p~-~~~~~~l~~~ 450 (531)
.|+ ...+..+..+
T Consensus 359 -~p~~~~~~~~l~~~ 372 (450)
T 2y4t_A 359 -NENDQQIREGLEKA 372 (450)
T ss_dssp -SSSCHHHHHHHHHH
T ss_pred -CcchHHHHHHHHHH
Confidence 454 5555555533
No 8
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.93 E-value=2.2e-22 Score=199.51 Aligned_cols=367 Identities=11% Similarity=-0.020 Sum_probs=298.2
Q ss_pred cCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCcchHHHH
Q 038190 65 EVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVA 144 (531)
Q Consensus 65 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~ 144 (531)
.|++++|+..|+++...+ |+..+|..+..++.+.|++++|+..++++.+.+ +.+..++..+..++...|++++|...
T Consensus 19 ~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~ 95 (514)
T 2gw1_A 19 NKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASANEGLGKFADAMFD 95 (514)
T ss_dssp TSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 469999999999999966 588999999999999999999999999999876 55678999999999999999999999
Q ss_pred HHHHHHCCCCCC--------------------------------------------------------------------
Q 038190 145 LGRILRKVFSPD-------------------------------------------------------------------- 156 (531)
Q Consensus 145 ~~~~~~~~~~~~-------------------------------------------------------------------- 156 (531)
|+++.+.+...+
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (514)
T 2gw1_A 96 LSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPEL 175 (514)
T ss_dssp HHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHHHHHHTTSCCCC
T ss_pred HHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhhcCHHH
Confidence 999988753211
Q ss_pred ----------hhhHHHHHHHHHh---cCChHHHHHHHHHHHH-----cCCCCCC----CCcHHhHHHHHHHHHhcCChhH
Q 038190 157 ----------VVTLGCLIRGLCM---QGKFTEASGLFTKFVA-----FDCRPNV----IPNVICYASIIDGLCKDGFVNK 214 (531)
Q Consensus 157 ----------~~~~~~li~~~~~---~g~~~~a~~~~~~~~~-----~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~ 214 (531)
...+..+...+.. .|++++|+..|+++.. ....|+. ..+..++..+...+...|++++
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (514)
T 2gw1_A 176 TFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLG 255 (514)
T ss_dssp CCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHH
T ss_pred HHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHH
Confidence 2222233333333 7999999999999987 3222221 1246688889999999999999
Q ss_pred HHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChhhhhcchHHHHHHHHHHHhCCCCCCccccCCHhhHHHHHHHHhcCCC
Q 038190 215 VRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVL 294 (531)
Q Consensus 215 a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~ 294 (531)
|...|+++.+... +...+..+...+...|++++|.. .++...... +.+..++..+...+...|+
T Consensus 256 A~~~~~~~l~~~~--~~~~~~~l~~~~~~~~~~~~A~~-------~~~~~~~~~-------~~~~~~~~~l~~~~~~~~~ 319 (514)
T 2gw1_A 256 AHEDIKKAIELFP--RVNSYIYMALIMADRNDSTEYYN-------YFDKALKLD-------SNNSSVYYHRGQMNFILQN 319 (514)
T ss_dssp HHHHHHHHHHHCC--CHHHHHHHHHHHHTSSCCTTGGG-------HHHHHHTTC-------TTCTHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhhCc--cHHHHHHHHHHHHHCCCHHHHHH-------HHHHHhhcC-------cCCHHHHHHHHHHHHHhCC
Confidence 9999999987643 37888889999999999999999 777776654 3466788899999999999
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 038190 295 VDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGE 374 (531)
Q Consensus 295 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~ 374 (531)
+++|...++.+.+... .+...+..+...|...|++++|...++++.+.... +...+..+...|...|++++|...+++
T Consensus 320 ~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~ 397 (514)
T 2gw1_A 320 YDQAGKDFDKAKELDP-ENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPE-APEVPNFFAEILTDKNDFDKALKQYDL 397 (514)
T ss_dssp TTHHHHHHHHHHHTCS-SCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCh-hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccc-CHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 9999999999988743 35678888999999999999999999999886433 567888999999999999999999998
Q ss_pred HHhCCCCCCcccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc---CCChHHHHHHHHHhhhCCCCCcHHHHHHHHHHH
Q 038190 375 MISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCK---SWRLRSAWELFKKLPRYGPEPNVVTYTVMICGL 451 (531)
Q Consensus 375 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~ 451 (531)
+.+...... .......++..+..+|.. .|++++|...++++.+.. +.+..++..+..+|
T Consensus 398 a~~~~~~~~-----------------~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 459 (514)
T 2gw1_A 398 AIELENKLD-----------------GIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD-PRSEQAKIGLAQMK 459 (514)
T ss_dssp HHHHHHTSS-----------------SCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHhhhccc-----------------hHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHH
Confidence 876321100 000014489999999999 999999999999998853 33677888999999
Q ss_pred HHcCCHHHHHHHHHHHHHH
Q 038190 452 CIEGGIEKAYDLLPDMEEK 470 (531)
Q Consensus 452 ~~~g~~~~A~~~~~~~~~~ 470 (531)
...|++++|.+.|++..+.
T Consensus 460 ~~~g~~~~A~~~~~~a~~~ 478 (514)
T 2gw1_A 460 LQQEDIDEAITLFEESADL 478 (514)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHh
Confidence 9999999998888876654
No 9
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.93 E-value=7.1e-23 Score=204.30 Aligned_cols=400 Identities=13% Similarity=0.046 Sum_probs=280.4
Q ss_pred hhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCcchHHHHHHHHHHCCCCCChhhHHHHHHHH
Q 038190 88 PSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGL 167 (531)
Q Consensus 88 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 167 (531)
..|..+...+.+.|++++|+..|+++.+.. +.+..++..+..++.+.|++++|...++++++..+. +..++..+..++
T Consensus 26 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~ 103 (537)
T 3fp2_A 26 VQLKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPD-HSKALLRRASAN 103 (537)
T ss_dssp HHHHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-hHHHHHHHHHHH
Confidence 455566666667777777777777766654 445666666666777777777777777776665432 555666666677
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCCCCCcHHhHHHHHHHHHhcCChhHHHHHHHHHhhC------CCCCCHh---------
Q 038190 168 CMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGR------GIYPDAF--------- 232 (531)
Q Consensus 168 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~------g~~p~~~--------- 232 (531)
...|++++|+..|+.+ .. .|+ .....+..+...+....|...++.+... ...|+..
T Consensus 104 ~~~g~~~~A~~~~~~~-~~--~~~------~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 174 (537)
T 3fp2_A 104 ESLGNFTDAMFDLSVL-SL--NGD------FDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIF 174 (537)
T ss_dssp HHHTCHHHHHHHHHHH-C-------------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTS
T ss_pred HHcCCHHHHHHHHHHH-hc--CCC------CChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhc
Confidence 7777777777766522 21 111 1111233334444445566666555432 1111111
Q ss_pred ---------------------hHHHHHHHHHh-cCChhhhhcchHHHHHHHHHHHhCCCCCCccccCCHhhHHHHHHHHh
Q 038190 233 ---------------------VYNSLIRVYCC-AVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLC 290 (531)
Q Consensus 233 ---------------------~~~~li~~~~~-~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~ 290 (531)
....+...+.. .+.+..+.+.+++|+.+++.+....+........-..++..+...+.
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~ 254 (537)
T 3fp2_A 175 DSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHF 254 (537)
T ss_dssp CHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHH
Confidence 11112222111 14556666778888889999988652100000000335777778889
Q ss_pred cCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 038190 291 KDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALS 370 (531)
Q Consensus 291 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~~~~~~a~~ 370 (531)
..|++++|...++.+.+. .|+...+..+...|...|++++|...|+++.+.... +..+|..+...|...|++++|..
T Consensus 255 ~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~ 331 (537)
T 3fp2_A 255 LKNNLLDAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPE-YPPTYYHRGQMYFILQDYKNAKE 331 (537)
T ss_dssp HTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hcccHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCCC-CHHHHHHHHHHHHhcCCHHHHHH
Confidence 999999999999999986 456888889999999999999999999999887543 67889999999999999999999
Q ss_pred HHHHHHhCCCCCCcccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHhhhCCCCCcHHHHHHHHHH
Q 038190 371 LYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICG 450 (531)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~ 450 (531)
.|+++.+.. |+ +...+..+..+|...|++++|..+++++.+.. +.+...+..+..+
T Consensus 332 ~~~~a~~~~--~~---------------------~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~ 387 (537)
T 3fp2_A 332 DFQKAQSLN--PE---------------------NVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEI 387 (537)
T ss_dssp HHHHHHHHC--TT---------------------CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHH
T ss_pred HHHHHHHhC--CC---------------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHH
Confidence 999998743 22 56789999999999999999999999998853 3357788899999
Q ss_pred HHHcCCHHHHHHHHHHHHHH-----------------------H----------hhHHHHHHHHHHHHHcCCCCCHHHHH
Q 038190 451 LCIEGGIEKAYDLLPDMEEK-----------------------I----------RECLKAIELLHKMAKRYVKPDEITVS 497 (531)
Q Consensus 451 ~~~~g~~~~A~~~~~~~~~~-----------------------i----------~~~~~a~~~~~~~~~~~~~~~~~~~~ 497 (531)
+...|++++|++.|+++.+. . +++++|+..++++++.. +.+...+.
T Consensus 388 ~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~ 466 (537)
T 3fp2_A 388 LTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELD-PRSEQAKI 466 (537)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhC-CCCHHHHH
Confidence 99999999999999998775 2 88999999999999765 34678899
Q ss_pred HHHHHHhccCChhHHHhhHHHhhhcchhh
Q 038190 498 ILEELLNKDENCHECMNLLPSFLSRNQEE 526 (531)
Q Consensus 498 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 526 (531)
.++.+|.+.|++++|.+.+++....++..
T Consensus 467 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~ 495 (537)
T 3fp2_A 467 GLAQLKLQMEKIDEAIELFEDSAILARTM 495 (537)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC--C
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhCCCc
Confidence 99999999999999999999977765543
No 10
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.93 E-value=8.4e-23 Score=202.55 Aligned_cols=379 Identities=12% Similarity=-0.033 Sum_probs=288.0
Q ss_pred hhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCcchHHHHHHHHHHCCCCCChhhHHHHHHH
Q 038190 87 MPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRG 166 (531)
Q Consensus 87 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 166 (531)
...|......+.+.|++++|+..|+++.+.. |+..+|..+..++.+.|++++|...++++++..+ .+..++..+..+
T Consensus 6 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~ 82 (514)
T 2gw1_A 6 ALALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELKP-DYSKVLLRRASA 82 (514)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccCh-HHHHHHHHHHHH
Confidence 4567777888999999999999999999875 6899999999999999999999999999998864 367899999999
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCCC------------------------------------------------------
Q 038190 167 LCMQGKFTEASGLFTKFVAFDCRPNV------------------------------------------------------ 192 (531)
Q Consensus 167 ~~~~g~~~~a~~~~~~~~~~~~~~~~------------------------------------------------------ 192 (531)
|...|++++|+..|+++...+.....
T Consensus 83 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (514)
T 2gw1_A 83 NEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVT 162 (514)
T ss_dssp HHHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHH
T ss_pred HHHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhH
Confidence 99999999999999999876421100
Q ss_pred --------------------CCcHHhHHHHHHHHHh---cCChhHHHHHHHHHhh-----CCCC--------CCHhhHHH
Q 038190 193 --------------------IPNVICYASIIDGLCK---DGFVNKVRVLFLDMKG-----RGIY--------PDAFVYNS 236 (531)
Q Consensus 193 --------------------~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~m~~-----~g~~--------p~~~~~~~ 236 (531)
..+...+......+.. .|++++|..+|+++.+ ..-. .+..++..
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (514)
T 2gw1_A 163 SMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEH 242 (514)
T ss_dssp HHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHH
Confidence 0012333333333443 7888888888888876 3111 13456667
Q ss_pred HHHHHHhcCChhhhhcchHHHHHHHHHHHhCCCCCCccccCCHhhHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHH
Q 038190 237 LIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVV 316 (531)
Q Consensus 237 li~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 316 (531)
+...+...|++++|.. .++.+.... |+...+..+..++...|++++|...++.+.+.. +.+...
T Consensus 243 ~~~~~~~~~~~~~A~~-------~~~~~l~~~--------~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~ 306 (514)
T 2gw1_A 243 TGIFKFLKNDPLGAHE-------DIKKAIELF--------PRVNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSV 306 (514)
T ss_dssp HHHHHHHSSCHHHHHH-------HHHHHHHHC--------CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHH
T ss_pred HHHHHHHCCCHHHHHH-------HHHHHHhhC--------ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHH
Confidence 7777888888777777 666665544 337778888888888888888888888887763 335667
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHH
Q 038190 317 YSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRT 396 (531)
Q Consensus 317 ~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 396 (531)
+..+...|...|++++|...|+++.+.... +...+..+...|...|++++|...++++.+.. |+
T Consensus 307 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~------------- 370 (514)
T 2gw1_A 307 YYHRGQMNFILQNYDQAGKDFDKAKELDPE-NIFPYIQLACLAYRENKFDDCETLFSEAKRKF--PE------------- 370 (514)
T ss_dssp HHHHHHHHHHTTCTTHHHHHHHHHHHTCSS-CSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS--TT-------------
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHhChh-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc--cc-------------
Confidence 788888888888888888888888876543 56677888888888888888888888877632 21
Q ss_pred HHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHhhhCCC-CCc----HHHHHHHHHHHHH---cCCHHHHHHHHHHHH
Q 038190 397 LHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGP-EPN----VVTYTVMICGLCI---EGGIEKAYDLLPDME 468 (531)
Q Consensus 397 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~-~p~----~~~~~~l~~~~~~---~g~~~~A~~~~~~~~ 468 (531)
+..++..+...|...|++++|...++++.+... .++ ...|..+..++.. .|++++|++.|+++.
T Consensus 371 --------~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~ 442 (514)
T 2gw1_A 371 --------APEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKAS 442 (514)
T ss_dssp --------CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHH
T ss_pred --------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHH
Confidence 567888899999999999999999998876311 111 3378888888888 898888887776654
Q ss_pred HHHhhHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChhHHHhhHHHhhhcchhh
Q 038190 469 EKIRECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLLPSFLSRNQEE 526 (531)
Q Consensus 469 ~~i~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 526 (531)
+. . +.+...+..++.+|.+.|++++|...+++....++..
T Consensus 443 ~~-----------------~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 482 (514)
T 2gw1_A 443 KL-----------------D-PRSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTM 482 (514)
T ss_dssp HH-----------------C-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSH
T ss_pred Hh-----------------C-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhcccc
Confidence 43 2 3356777888888888899999888888876665543
No 11
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.92 E-value=2.6e-21 Score=188.44 Aligned_cols=288 Identities=11% Similarity=0.033 Sum_probs=243.9
Q ss_pred cCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCcchHHHH
Q 038190 65 EVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVA 144 (531)
Q Consensus 65 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~ 144 (531)
.|++++|+.+|+.+.+..+. +..+|..+...+...|++++|+..|+++.+.+ +.+..++..+..++.+.|++++|...
T Consensus 39 ~g~~~~A~~~~~~~l~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~ 116 (450)
T 2y4t_A 39 AGQLADALSQFHAAVDGDPD-NYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRGHLLLKQGKLDEAEDD 116 (450)
T ss_dssp TTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHH
Confidence 45999999999999987665 78899999999999999999999999999876 55688999999999999999999999
Q ss_pred HHHHHHCCCCCCh---hhHHHH------------HHHHHhcCChHHHHHHHHHHHHcCCCCCCCCcHHhHHHHHHHHHhc
Q 038190 145 LGRILRKVFSPDV---VTLGCL------------IRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKD 209 (531)
Q Consensus 145 ~~~~~~~~~~~~~---~~~~~l------------i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 209 (531)
|+++.+..+. +. .++..+ ...+...|++++|+..|+++... .|. +..++..+..+|...
T Consensus 117 ~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~---~~~~~~~l~~~~~~~ 190 (450)
T 2y4t_A 117 FKKVLKSNPS-ENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEV--CVW---DAELRELRAECFIKE 190 (450)
T ss_dssp HHHHHTSCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTT---CHHHHHHHHHHHHHT
T ss_pred HHHHHhcCCC-ChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCC---ChHHHHHHHHHHHHC
Confidence 9999987532 33 555555 44588999999999999999886 442 788999999999999
Q ss_pred CChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChhhhhcchHHHHHHHHHHHhCCCCCCccccCCHhhHHHH----
Q 038190 210 GFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSI---- 285 (531)
Q Consensus 210 ~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l---- 285 (531)
|++++|...|+++.+.. +.+..++..+...|...|++++|.. .|+.+.... +.+...+..+
T Consensus 191 g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~-------~~~~~~~~~-------p~~~~~~~~~~~~~ 255 (450)
T 2y4t_A 191 GEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLS-------EVRECLKLD-------QDHKRCFAHYKQVK 255 (450)
T ss_dssp TCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHH-------HHHHHHHHC-------TTCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHH-------HHHHHHHhC-------CChHHHHHHHHHHH
Confidence 99999999999998753 3368889999999999999999988 666666543 2334444444
Q ss_pred --------HHHHhcCCCHHHHHHHHHHHHhCCCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHH
Q 038190 286 --------INSLCKDVLVDKAKELFLDMKSRGIIPD-----VVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSY 352 (531)
Q Consensus 286 --------l~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~ 352 (531)
...+...|++++|..+|+.+.+. .|+ ...+..+..++.+.|++++|...++++.+... .+...|
T Consensus 256 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~~ 332 (450)
T 2y4t_A 256 KLNKLIESAEELIRDGRYTDATSKYESVMKT--EPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEP-DNVNAL 332 (450)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCT-TCHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc-ccHHHH
Confidence 78899999999999999999885 344 45788889999999999999999999987643 268899
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhC
Q 038190 353 NTLINSYSKIEKVEEALSLYGEMISM 378 (531)
Q Consensus 353 ~~li~~~~~~~~~~~a~~~~~~~~~~ 378 (531)
..+..+|...|++++|...|+++.+.
T Consensus 333 ~~l~~~~~~~~~~~~A~~~~~~al~~ 358 (450)
T 2y4t_A 333 KDRAEAYLIEEMYDEAIQDYETAQEH 358 (450)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 99999999999999999999999873
No 12
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.89 E-value=2.9e-20 Score=185.34 Aligned_cols=365 Identities=13% Similarity=0.037 Sum_probs=268.0
Q ss_pred CcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCcchHHH
Q 038190 64 GEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFV 143 (531)
Q Consensus 64 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~ 143 (531)
..|++++|+..|+.+.+..|. +..+|..+..++.+.|++++|++.|+++.+.+ +.+..++..+..++...|++++|..
T Consensus 37 ~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~ 114 (537)
T 3fp2_A 37 TAKNFNEAIKYYQYAIELDPN-EPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASANESLGNFTDAMF 114 (537)
T ss_dssp HTTCCC-CHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HhccHHHHHHHHHHHHhhCCC-CcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHHHHHcCCHHHHHH
Confidence 356999999999999998776 78899999999999999999999999999876 5578899999999999999999999
Q ss_pred HHHHHHHCCCCCChh-----------------------------------------------------------------
Q 038190 144 ALGRILRKVFSPDVV----------------------------------------------------------------- 158 (531)
Q Consensus 144 ~~~~~~~~~~~~~~~----------------------------------------------------------------- 158 (531)
.|+. ....+.....
T Consensus 115 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (537)
T 3fp2_A 115 DLSV-LSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAY 193 (537)
T ss_dssp HHHH-HC-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCCCCSSCSSH
T ss_pred HHHH-HhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhhccccccHH
Confidence 9963 3221111100
Q ss_pred --hHHHHHHHHH--------hcCChHHHHHHHHHHHHcCCCCCCCCc-----HHhHHHHHHHHHhcCChhHHHHHHHHHh
Q 038190 159 --TLGCLIRGLC--------MQGKFTEASGLFTKFVAFDCRPNVIPN-----VICYASIIDGLCKDGFVNKVRVLFLDMK 223 (531)
Q Consensus 159 --~~~~li~~~~--------~~g~~~~a~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 223 (531)
....+...+. ..|++++|+.+|+++... .|+. ++ ..++..+...+...|++++|...|+++.
T Consensus 194 ~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~--~p~~-~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~ 270 (537)
T 3fp2_A 194 ALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSA--NTVD-DPLRENAALALCYTGIFHFLKNNLLDAQVLLQESI 270 (537)
T ss_dssp HHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC----CCC-HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH--CCCc-chhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 1111111111 114678888888888765 3320 11 2246666777888888899999888888
Q ss_pred hCCCCCCHhhHHHHHHHHHhcCChhhhhcchHHHHHHHHHHHhCCCCCCccccCCHhhHHHHHHHHhcCCCHHHHHHHHH
Q 038190 224 GRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFL 303 (531)
Q Consensus 224 ~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~ 303 (531)
+. .|+...+..+...+...|++++|.. .++...... +.+..++..+...+...|++++|...++
T Consensus 271 ~~--~~~~~~~~~l~~~~~~~~~~~~A~~-------~~~~~~~~~-------~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 334 (537)
T 3fp2_A 271 NL--HPTPNSYIFLALTLADKENSQEFFK-------FFQKAVDLN-------PEYPPTYYHRGQMYFILQDYKNAKEDFQ 334 (537)
T ss_dssp HH--CCCHHHHHHHHHHTCCSSCCHHHHH-------HHHHHHHHC-------TTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred hc--CCCchHHHHHHHHHHHhcCHHHHHH-------HHHHHhccC-------CCCHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 75 3456777778888888888888777 555555543 3456778888888888899999999888
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 038190 304 DMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD 383 (531)
Q Consensus 304 ~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~ 383 (531)
++.+.. +.+...+..+...|...|++++|...++++.+.... +...+..+...|...|++++|...|+++.+.....
T Consensus 335 ~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~- 411 (537)
T 3fp2_A 335 KAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPT-LPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQ- 411 (537)
T ss_dssp HHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcc-
Confidence 887763 224567888888888889999999999888876433 56678888888888899999988888876532100
Q ss_pred cccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcC----------CChHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHH
Q 038190 384 NSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKS----------WRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCI 453 (531)
Q Consensus 384 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~ 453 (531)
.........+..+..++... |++++|...|+++.+.. +.+...+..+..+|..
T Consensus 412 ----------------~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~ 474 (537)
T 3fp2_A 412 ----------------EKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELD-PRSEQAKIGLAQLKLQ 474 (537)
T ss_dssp ----------------SSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred ----------------hhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence 00111233355566777777 99999999999998853 3367888999999999
Q ss_pred cCCHHHHHHHHHHHHHH
Q 038190 454 EGGIEKAYDLLPDMEEK 470 (531)
Q Consensus 454 ~g~~~~A~~~~~~~~~~ 470 (531)
.|++++|++.|++..+.
T Consensus 475 ~g~~~~A~~~~~~al~~ 491 (537)
T 3fp2_A 475 MEKIDEAIELFEDSAIL 491 (537)
T ss_dssp TTCHHHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHh
Confidence 99999999999887765
No 13
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.87 E-value=1.8e-18 Score=162.72 Aligned_cols=319 Identities=12% Similarity=0.006 Sum_probs=203.3
Q ss_pred hhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCcchHHHHHHHHHHCCCCCChhhHHHHHHH
Q 038190 87 MPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRG 166 (531)
Q Consensus 87 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 166 (531)
+..|..+...+...|++++|+..|+++.+.. +.+..++..+..++...|++++|...++++.+..+. +..++..+..+
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~ 80 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMD-FTAARLQRGHL 80 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-cchHHHHHHHH
Confidence 4566677777777788888888888777654 445667777777777778888888888777776432 55677777777
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCCCCCcHHhHHHH------------HHHHHhcCChhHHHHHHHHHhhCCCCCCHhhH
Q 038190 167 LCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASI------------IDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVY 234 (531)
Q Consensus 167 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l------------~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~ 234 (531)
+...|++++|...|+++.... |....+...+..+ ...+...|++++|...|+++.+.. +.+...+
T Consensus 81 ~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~ 157 (359)
T 3ieg_A 81 LLKQGKLDEAEDDFKKVLKSN--PSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVC-VWDAELR 157 (359)
T ss_dssp HHHHTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred HHHcCChHHHHHHHHHHHhcC--CcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCchHHH
Confidence 777888888888887777642 2000033344444 456666777777777777766542 2245566
Q ss_pred HHHHHHHHhcCChhhhhcchHHHHHHHHHHHhCCCCCCccccCCHhhHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCH
Q 038190 235 NSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDV 314 (531)
Q Consensus 235 ~~li~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 314 (531)
..+...+...|++++|.. .++...... +.+..++..+...+...|++++|...++...+... .+.
T Consensus 158 ~~~~~~~~~~~~~~~A~~-------~~~~~~~~~-------~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~-~~~ 222 (359)
T 3ieg_A 158 ELRAECFIKEGEPRKAIS-------DLKAASKLK-------SDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQ-DHK 222 (359)
T ss_dssp HHHHHHHHHTTCHHHHHH-------HHHHHHTTC-------SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCH
T ss_pred HHHHHHHHHCCCHHHHHH-------HHHHHHHhC-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc-cch
Confidence 666666676666666666 555555443 34556666677777777777777777776665421 122
Q ss_pred HHHH------------HHHHHHHhcCCHHHHHHHHHHHHhcCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 038190 315 VVYS------------SLIDGYCLMGRIDDARKLFVSIESEGCIPDT----SSYNTLINSYSKIEKVEEALSLYGEMISM 378 (531)
Q Consensus 315 ~~~~------------~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~----~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 378 (531)
..+. .+...+.+.|++++|...++++.+.... +. ..+..+...|.+.|++++|...+++..+.
T Consensus 223 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 301 (359)
T 3ieg_A 223 RCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPS-VAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQM 301 (359)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 2222 2245567777777777777777765432 22 22444566777777777777777777663
Q ss_pred CCCCCcccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHhhhCCCCCc-HHHHHHHHHHH
Q 038190 379 GVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPN-VVTYTVMICGL 451 (531)
Q Consensus 379 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~ 451 (531)
.|+ +..++..+..+|...|++++|...|+++.+. .|+ ...+..+..+.
T Consensus 302 --~~~---------------------~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~--~p~~~~~~~~l~~~~ 350 (359)
T 3ieg_A 302 --EPD---------------------NVNALKDRAEAYLIEEMYDEAIQDYEAAQEH--NENDQQIREGLEKAQ 350 (359)
T ss_dssp --CTT---------------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CTTCHHHHHHHHHHH
T ss_pred --Ccc---------------------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCChHHHHHHHHHH
Confidence 222 5667777777777777777777777777764 343 44444444443
No 14
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.86 E-value=4.2e-18 Score=160.20 Aligned_cols=303 Identities=11% Similarity=-0.017 Sum_probs=246.3
Q ss_pred CHhhHHHHHHHHHccCCcchHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCCCcHHhHH
Q 038190 121 DFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYA 200 (531)
Q Consensus 121 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 200 (531)
+...+..+...+...|++++|...|+++++..+. +..++..+..++...|++++|+..|+++... .|+ +..+|.
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~---~~~~~~ 75 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPD-NYIAYYRRATVFLAMGKSKAALPDLTKVIAL--KMD---FTAARL 75 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTT---CHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCC---cchHHH
Confidence 4567788889999999999999999999987543 6789999999999999999999999999986 442 678899
Q ss_pred HHHHHHHhcCChhHHHHHHHHHhhCCCC--CCHhhHHHH------------HHHHHhcCChhhhhcchHHHHHHHHHHHh
Q 038190 201 SIIDGLCKDGFVNKVRVLFLDMKGRGIY--PDAFVYNSL------------IRVYCCAVNWEDAKGNTSAALELHEEFVN 266 (531)
Q Consensus 201 ~l~~~~~~~~~~~~a~~~~~~m~~~g~~--p~~~~~~~l------------i~~~~~~~~~~~a~~~~~~a~~~~~~~~~ 266 (531)
.+...+...|++++|...|+++.+.... .+...+..+ ...+...|++++|.. .++.+..
T Consensus 76 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~-------~~~~~~~ 148 (359)
T 3ieg_A 76 QRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAIT-------FLDKILE 148 (359)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHH-------HHHHHHH
T ss_pred HHHHHHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHH-------HHHHHHH
Confidence 9999999999999999999999875320 133444444 467778888888877 7776666
Q ss_pred CCCCCCccccCCHhhHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 038190 267 GNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCI 346 (531)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~ 346 (531)
.. +.+...+..+...+...|++++|...++.+.+.. +.+..++..+...|...|++++|...|++..+....
T Consensus 149 ~~-------~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~ 220 (359)
T 3ieg_A 149 VC-------VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQD 220 (359)
T ss_dssp HC-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT
T ss_pred hC-------CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc
Confidence 54 4567889999999999999999999999998874 447888999999999999999999999999886433
Q ss_pred CCHHHHH------------HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHhCCCCCCH----HHHH
Q 038190 347 PDTSSYN------------TLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDL----TVFN 410 (531)
Q Consensus 347 p~~~~~~------------~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~ 410 (531)
+...+. .+...+.+.|++++|...++++.+.. |+ +. ..+.
T Consensus 221 -~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~---------------------~~~~~~~~~~ 276 (359)
T 3ieg_A 221 -HKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE--PS---------------------VAEYTVRSKE 276 (359)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CS---------------------SHHHHHHHHH
T ss_pred -chHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CC---------------------chHHHHHHHH
Confidence 333333 23667889999999999999987743 21 22 3466
Q ss_pred HHHHHHHcCCChHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 038190 411 CLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEE 469 (531)
Q Consensus 411 ~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 469 (531)
.+..+|...|++++|..++++..+.. +.+..+|..+..+|...|++++|++.|+++.+
T Consensus 277 ~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~ 334 (359)
T 3ieg_A 277 RICHCFSKDEKPVEAIRICSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYEAAQE 334 (359)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 78899999999999999999998852 33688999999999999999999888876554
No 15
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.85 E-value=2.7e-16 Score=154.38 Aligned_cols=337 Identities=13% Similarity=-0.004 Sum_probs=189.0
Q ss_pred ChhhHHHHHHHHHc----cCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHc----cCCcchHHHHHHHHHHCCCCCCh
Q 038190 86 FMPSFNSLLGALAG----KKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCK----MIGVSDAFVALGRILRKVFSPDV 157 (531)
Q Consensus 86 ~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~~~~~~~ 157 (531)
+..++..+...|.. .+++++|+..|++..+.| +...+..|...|.. .+++++|..+|++..+.| +.
T Consensus 38 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~ 111 (490)
T 2xm6_A 38 EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LP 111 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CH
T ss_pred CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CH
Confidence 45555666666655 666777777777666654 45556666666665 666777777777666654 44
Q ss_pred hhHHHHHHHHHh----cCChHHHHHHHHHHHHcCCCCCCCCcHHhHHHHHHHHHh----cCChhHHHHHHHHHhhCCCCC
Q 038190 158 VTLGCLIRGLCM----QGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCK----DGFVNKVRVLFLDMKGRGIYP 229 (531)
Q Consensus 158 ~~~~~li~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~m~~~g~~p 229 (531)
..+..|...|.. .+++++|+..|++....+ +...+..|...|.. .+++++|.+.|++..+.|
T Consensus 112 ~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~-------~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~--- 181 (490)
T 2xm6_A 112 QAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG-------RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG--- 181 (490)
T ss_dssp HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---
T ss_pred HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC-------CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---
Confidence 555556666666 566777777776666532 44556666666665 566777777776666553
Q ss_pred CHhhHHHHHHHHHh----cCChhhhhcchHHHHHHHHHHHhCCCCCCccccCCHhhHHHHHHHHhc----CCCHHHHHHH
Q 038190 230 DAFVYNSLIRVYCC----AVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCK----DVLVDKAKEL 301 (531)
Q Consensus 230 ~~~~~~~li~~~~~----~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~ 301 (531)
+...+..+...|.. .++.++|.. .|+.....+ +..++..+...|.. .+++++|..+
T Consensus 182 ~~~a~~~Lg~~y~~g~g~~~~~~~A~~-------~~~~a~~~~---------~~~a~~~lg~~y~~g~g~~~~~~~A~~~ 245 (490)
T 2xm6_A 182 NVWSCNQLGYMYSRGLGVERNDAISAQ-------WYRKSATSG---------DELGQLHLADMYYFGIGVTQDYTQSRVL 245 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHH-------HHHHHHHTT---------CHHHHHHHHHHHHHTSSSCCCHHHHHHH
T ss_pred CHHHHHHHHHHHhcCCCCCcCHHHHHH-------HHHHHHHCC---------CHHHHHHHHHHHHcCCCCCCCHHHHHHH
Confidence 45555555555554 344444444 555555443 34455555555554 5667777777
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc-----CCHHHHHHHH
Q 038190 302 FLDMKSRGIIPDVVVYSSLIDGYCL----MGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKI-----EKVEEALSLY 372 (531)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~-----~~~~~a~~~~ 372 (531)
|++..+.| +...+..+...|.. .+++++|...|++..+.| +...+..+...|... +++++|+.+|
T Consensus 246 ~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~ 319 (490)
T 2xm6_A 246 FSQSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWY 319 (490)
T ss_dssp HHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHH
T ss_pred HHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHH
Confidence 76666553 34455555555555 666777777777666553 444555556666555 6666666666
Q ss_pred HHHHhCCCCCC-------------cccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc----CCChHHHHHHHHHhhhC
Q 038190 373 GEMISMGVRPD-------------NSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCK----SWRLRSAWELFKKLPRY 435 (531)
Q Consensus 373 ~~~~~~~~~~~-------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~ 435 (531)
++..+.+.... ..+.++|+..++...+.+ ++..+..|...|.. .+++++|..+|++..+.
T Consensus 320 ~~a~~~~~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~ 396 (490)
T 2xm6_A 320 TKSAEQGDATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQ 396 (490)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred HHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhC
Confidence 66655431000 012233333333333322 44555555555555 55555555555555553
Q ss_pred CCCCcHHHHHHHHHHHHH----cCCHHHHHHHHHH
Q 038190 436 GPEPNVVTYTVMICGLCI----EGGIEKAYDLLPD 466 (531)
Q Consensus 436 g~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~ 466 (531)
| ++..+..+...|.. .+++++|.+.|++
T Consensus 397 ~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~ 428 (490)
T 2xm6_A 397 G---LSAAQVQLGEIYYYGLGVERDYVQAWAWFDT 428 (490)
T ss_dssp T---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHH
T ss_pred C---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHH
Confidence 2 34445555555554 4555555444433
No 16
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.85 E-value=2.4e-16 Score=154.74 Aligned_cols=328 Identities=12% Similarity=0.058 Sum_probs=272.9
Q ss_pred CcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHc----cCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHc----c
Q 038190 64 GEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAG----KKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCK----M 135 (531)
Q Consensus 64 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~----~ 135 (531)
..++++.|...|+...+.+ +..++..|...|.. .+++++|+..|++..+.| +...+..|...|.. .
T Consensus 55 ~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~ 128 (490)
T 2xm6_A 55 TTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LPQAQQNLGVMYHEGNGVK 128 (490)
T ss_dssp SCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSC
T ss_pred CCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCC
Confidence 4579999999999998864 56788888889988 899999999999999876 66778888888887 7
Q ss_pred CCcchHHHHHHHHHHCCCCCChhhHHHHHHHHHh----cCChHHHHHHHHHHHHcCCCCCCCCcHHhHHHHHHHHHh---
Q 038190 136 IGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCM----QGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCK--- 208 (531)
Q Consensus 136 g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--- 208 (531)
+++++|..+|++..+.| +...+..|...|.. .+++++|+..|++....+ +..++..+...|..
T Consensus 129 ~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~-------~~~a~~~Lg~~y~~g~g 198 (490)
T 2xm6_A 129 VDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG-------NVWSCNQLGYMYSRGLG 198 (490)
T ss_dssp CCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-------CHHHHHHHHHHHHHTSS
T ss_pred CCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC-------CHHHHHHHHHHHhcCCC
Confidence 89999999999999876 56778888888887 789999999999998752 67788889999988
Q ss_pred -cCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHh----cCChhhhhcchHHHHHHHHHHHhCCCCCCccccCCHhhHH
Q 038190 209 -DGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCC----AVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYC 283 (531)
Q Consensus 209 -~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~----~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (531)
.++.++|..+|++..+.| +...+..+...|.. .+++++|.. +|+.....+ +...+.
T Consensus 199 ~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~-------~~~~a~~~~---------~~~a~~ 259 (490)
T 2xm6_A 199 VERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRV-------LFSQSAEQG---------NSIAQF 259 (490)
T ss_dssp SCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHH-------HHHHHHTTT---------CHHHHH
T ss_pred CCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHH-------HHHHHHHCC---------CHHHHH
Confidence 899999999999998875 55667777777765 455555555 888877665 455677
Q ss_pred HHHHHHhc----CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc-----CCHHHHHHHHHHHHhcCCCCCHHHHHH
Q 038190 284 SIINSLCK----DVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLM-----GRIDDARKLFVSIESEGCIPDTSSYNT 354 (531)
Q Consensus 284 ~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~-----g~~~~a~~~~~~~~~~g~~p~~~~~~~ 354 (531)
.+...|.. .+++++|..+|++..+.| +...+..+...|... +++++|...|++..+.| +...+..
T Consensus 260 ~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~ 333 (490)
T 2xm6_A 260 RLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQAN 333 (490)
T ss_dssp HHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred HHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHH
Confidence 77777777 899999999999998764 566777888888887 89999999999999875 5667778
Q ss_pred HHHHHHhcC---CHHHHHHHHHHHHhCCCCCC---------------cccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 038190 355 LINSYSKIE---KVEEALSLYGEMISMGVRPD---------------NSCILEAAELFRTLHNTKFELDLTVFNCLVDGL 416 (531)
Q Consensus 355 li~~~~~~~---~~~~a~~~~~~~~~~~~~~~---------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 416 (531)
+...|...| +.++|+++|++..+.+. +. .++.++|...++...+.+ +...+..|...|
T Consensus 334 lg~~y~~~g~~~~~~~A~~~~~~a~~~~~-~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~---~~~a~~~Lg~~y 409 (490)
T 2xm6_A 334 LGAIYFRLGSEEEHKKAVEWFRKAAAKGE-KAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG---LSAAQVQLGEIY 409 (490)
T ss_dssp HHHHHHHSCCHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHH
T ss_pred HHHHHHhCCCcccHHHHHHHHHHHHHCCC-HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC---CHHHHHHHHHHH
Confidence 888887766 78999999999887642 21 478899999999999876 678899999999
Q ss_pred Hc----CCChHHHHHHHHHhhhCC
Q 038190 417 CK----SWRLRSAWELFKKLPRYG 436 (531)
Q Consensus 417 ~~----~g~~~~A~~~~~~~~~~g 436 (531)
.. .+++++|...|++..+.+
T Consensus 410 ~~g~g~~~d~~~A~~~~~~A~~~~ 433 (490)
T 2xm6_A 410 YYGLGVERDYVQAWAWFDTASTND 433 (490)
T ss_dssp HHTSSSCCCHHHHHHHHHHHHHHH
T ss_pred HcCCCCCCCHHHHHHHHHHHHHCC
Confidence 98 899999999999999864
No 17
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.84 E-value=2.9e-18 Score=159.35 Aligned_cols=293 Identities=11% Similarity=-0.022 Sum_probs=240.4
Q ss_pred CChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCcchHHHHHHHHHHCCCCCChhhHHHHH
Q 038190 85 PFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLI 164 (531)
Q Consensus 85 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li 164 (531)
.+...+..+...+...|++++|+.+|+++.+.. +.+..++..++.++...|++++|...++++.+..+. +..++..+.
T Consensus 20 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~ 97 (330)
T 3hym_B 20 ENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPS-NPVSWFAVG 97 (330)
T ss_dssp CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-STHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcC-CHHHHHHHH
Confidence 356678888888899999999999999998775 556677888888899999999999999999987533 677888899
Q ss_pred HHHHhcC-ChHHHHHHHHHHHHcCCCCCCCCcHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHh
Q 038190 165 RGLCMQG-KFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCC 243 (531)
Q Consensus 165 ~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~ 243 (531)
..+...| ++++|...|++.... .|. +..+|..+...+...|++++|...|+++.+.... +...+..+...+..
T Consensus 98 ~~~~~~~~~~~~A~~~~~~a~~~--~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~ 171 (330)
T 3hym_B 98 CYYLMVGHKNEHARRYLSKATTL--EKT---YGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKG-CHLPMLYIGLEYGL 171 (330)
T ss_dssp HHHHHSCSCHHHHHHHHHHHHTT--CTT---CTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTT-CSHHHHHHHHHHHH
T ss_pred HHHHHhhhhHHHHHHHHHHHHHh--CCc---cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccc-cHHHHHHHHHHHHH
Confidence 9999999 999999999999876 342 5778999999999999999999999998875322 45667778888999
Q ss_pred cCChhhhhcchHHHHHHHHHHHhCCCCCCccccCCHhhHHHHHHHHhcCCCHHHHHHHHHHHHhCC--------CCCCHH
Q 038190 244 AVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRG--------IIPDVV 315 (531)
Q Consensus 244 ~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--------~~~~~~ 315 (531)
.|++++|.. .++...... +.+...+..+...+...|++++|...++++.+.. .+.+..
T Consensus 172 ~~~~~~A~~-------~~~~al~~~-------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 237 (330)
T 3hym_B 172 TNNSKLAER-------FFSQALSIA-------PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEP 237 (330)
T ss_dssp TTCHHHHHH-------HHHHHHTTC-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCH
T ss_pred HhhHHHHHH-------HHHHHHHhC-------CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHH
Confidence 998888888 777777654 4567888999999999999999999999887641 133457
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHH
Q 038190 316 VYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFR 395 (531)
Q Consensus 316 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~ 395 (531)
++..+...|...|++++|...|++..+.... +...|..+...|.+.|++++|...|++..+. .|+
T Consensus 238 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~------------ 302 (330)
T 3hym_B 238 LLNNLGHVCRKLKKYAEALDYHRQALVLIPQ-NASTYSAIGYIHSLMGNFENAVDYFHTALGL--RRD------------ 302 (330)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHHTCHHHHHHHHHTTTTT--CSC------------
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhhCcc-chHHHHHHHHHHHHhccHHHHHHHHHHHHcc--CCC------------
Confidence 8889999999999999999999999887543 6788899999999999999999999988763 343
Q ss_pred HHHhCCCCCCHHHHHHHHHHH-HcCCChH
Q 038190 396 TLHNTKFELDLTVFNCLVDGL-CKSWRLR 423 (531)
Q Consensus 396 ~~~~~~~~~~~~~~~~l~~~~-~~~g~~~ 423 (531)
+...+..+..++ ...|+.+
T Consensus 303 ---------~~~~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 303 ---------DTFSVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp ---------CHHHHHHHHHHHHTTTTC--
T ss_pred ---------chHHHHHHHHHHHHHhCchh
Confidence 777888888887 4556543
No 18
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.84 E-value=8.3e-18 Score=156.24 Aligned_cols=294 Identities=13% Similarity=0.001 Sum_probs=241.9
Q ss_pred CCCHhhHHHHHHHHHccCCcchHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCCCcHHh
Q 038190 119 LPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVIC 198 (531)
Q Consensus 119 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ 198 (531)
+.+...+..+...+...|++++|..+++++.+..+. +...+..++.++...|++++|..+++++... .|. +..+
T Consensus 19 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~---~~~~ 92 (330)
T 3hym_B 19 QENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPF-HASCLPVHIGTLVELNKANELFYLSHKLVDL--YPS---NPVS 92 (330)
T ss_dssp -CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTTTHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTT---STHH
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-ChhhHHHHHHHHHHhhhHHHHHHHHHHHHHh--CcC---CHHH
Confidence 556778888899999999999999999999987543 6667778889999999999999999999986 442 6788
Q ss_pred HHHHHHHHHhcC-ChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChhhhhcchHHHHHHHHHHHhCCCCCCccccC
Q 038190 199 YASIIDGLCKDG-FVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHP 277 (531)
Q Consensus 199 ~~~l~~~~~~~~-~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~ 277 (531)
|..+...+...| ++++|...|++..+... .+...|..+...+...|++++|.. .++...... +.
T Consensus 93 ~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~-------~~~~a~~~~-------~~ 157 (330)
T 3hym_B 93 WFAVGCYYLMVGHKNEHARRYLSKATTLEK-TYGPAWIAYGHSFAVESEHDQAMA-------AYFTAAQLM-------KG 157 (330)
T ss_dssp HHHHHHHHHHSCSCHHHHHHHHHHHHTTCT-TCTHHHHHHHHHHHHHTCHHHHHH-------HHHHHHHHT-------TT
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHccCHHHHHH-------HHHHHHHhc-------cc
Confidence 999999999999 99999999999987642 256778899999999999999888 666655543 33
Q ss_pred CHhhHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC--------CCCH
Q 038190 278 DVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGC--------IPDT 349 (531)
Q Consensus 278 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~--------~p~~ 349 (531)
+...+..+...+...|++++|...++++.+.. +.+...+..+...|...|++++|...++++.+... ....
T Consensus 158 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 236 (330)
T 3hym_B 158 CHLPMLYIGLEYGLTNNSKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWE 236 (330)
T ss_dssp CSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCC
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHH
Confidence 45677779999999999999999999998874 44678899999999999999999999999876421 2345
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHH
Q 038190 350 SSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELF 429 (531)
Q Consensus 350 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 429 (531)
..+..+...|...|++++|...+++..+.. |+ +..++..+..+|...|++++|...|
T Consensus 237 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--~~---------------------~~~~~~~la~~~~~~g~~~~A~~~~ 293 (330)
T 3hym_B 237 PLLNNLGHVCRKLKKYAEALDYHRQALVLI--PQ---------------------NASTYSAIGYIHSLMGNFENAVDYF 293 (330)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TT---------------------CSHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhhC--cc---------------------chHHHHHHHHHHHHhccHHHHHHHH
Confidence 788999999999999999999999988743 22 6778999999999999999999999
Q ss_pred HHhhhCCCCCcHHHHHHHHHHH-HHcCCHH
Q 038190 430 KKLPRYGPEPNVVTYTVMICGL-CIEGGIE 458 (531)
Q Consensus 430 ~~~~~~g~~p~~~~~~~l~~~~-~~~g~~~ 458 (531)
+++.+.. +.+...+..+..++ ...|+.+
T Consensus 294 ~~al~~~-p~~~~~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 294 HTALGLR-RDDTFSVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp HTTTTTC-SCCHHHHHHHHHHHHTTTTC--
T ss_pred HHHHccC-CCchHHHHHHHHHHHHHhCchh
Confidence 9998852 23577777888777 4556543
No 19
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.83 E-value=8.9e-17 Score=159.48 Aligned_cols=404 Identities=10% Similarity=-0.034 Sum_probs=280.1
Q ss_pred cCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHH-HccCCcchHHH
Q 038190 65 EVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCF-CKMIGVSDAFV 143 (531)
Q Consensus 65 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~-~~~g~~~~a~~ 143 (531)
.|+++.|..+|+++.+..|. +...|...+..+.+.|++++|..+|++++... |+...|...+... ...|+.+.|.+
T Consensus 25 ~~~~~~a~~~~e~al~~~P~-~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~--p~~~lw~~~~~~~~~~~~~~~~a~~ 101 (530)
T 2ooe_A 25 NQPIDKARKTYERLVAQFPS-SGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV--LHIDLWKCYLSYVRETKGKLPSYKE 101 (530)
T ss_dssp SSCHHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC--CCHHHHHHHHHHHHHHTTTSTTHHH
T ss_pred hCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CChHHHHHHHHHHHHHccchhhHHH
Confidence 56999999999999987665 77889999999999999999999999998774 6777777777533 45678887765
Q ss_pred ----HHHHHHH-CCCCC-ChhhHHHHHHHHHh---------cCChHHHHHHHHHHHHcCCCCCCCCcHHhHHHHHHHH--
Q 038190 144 ----ALGRILR-KVFSP-DVVTLGCLIRGLCM---------QGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGL-- 206 (531)
Q Consensus 144 ----~~~~~~~-~~~~~-~~~~~~~li~~~~~---------~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-- 206 (531)
+|+..+. .|..| +...|...+....+ .|+++.|..+|++.+. .|.. .....|.......
T Consensus 102 ~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~---~P~~-~~~~~~~~~~~~e~~ 177 (530)
T 2ooe_A 102 KMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCV---NPMI-NIEQLWRDYNKYEEG 177 (530)
T ss_dssp HHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTT---SCCT-THHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHh---chhh-hHHHHHHHHHHHHHh
Confidence 7776655 35443 56788888887776 6889999999999987 2321 1234454433321
Q ss_pred -----------HhcCChhHHHHHHHHH------hhCC---CCCC--------HhhHHHHHHHHHhcC-ChhhhhcchHHH
Q 038190 207 -----------CKDGFVNKVRVLFLDM------KGRG---IYPD--------AFVYNSLIRVYCCAV-NWEDAKGNTSAA 257 (531)
Q Consensus 207 -----------~~~~~~~~a~~~~~~m------~~~g---~~p~--------~~~~~~li~~~~~~~-~~~~a~~~~~~a 257 (531)
.+.+++..|..++..+ .+.. ++|+ ...|...+......+ ..++.......+
T Consensus 178 ~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a 257 (530)
T 2ooe_A 178 INIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRV 257 (530)
T ss_dssp HCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHH
T ss_pred hchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHH
Confidence 1245677777777663 2221 2343 234444443322211 011110012344
Q ss_pred HHHHHHHHhCCCCCCccccCCHhhHHHHHHHHhc-------CCCHH-------HHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 038190 258 LELHEEFVNGNGELGVICHPDVLSYCSIINSLCK-------DVLVD-------KAKELFLDMKSRGIIPDVVVYSSLIDG 323 (531)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~-------~~~~~-------~a~~~~~~~~~~~~~~~~~~~~~ll~~ 323 (531)
+.+|++..... +.+...|...+..+.+ .|+++ +|..+|+...+.-.+.+...|..++..
T Consensus 258 ~~~y~~al~~~-------p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~ 330 (530)
T 2ooe_A 258 MFAYEQCLLVL-------GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADY 330 (530)
T ss_dssp HHHHHHHHHHH-------TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHH
T ss_pred HHHHHHHHHhC-------CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence 45666666543 4467788888887775 78877 899999998863233468889999999
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHhCCC
Q 038190 324 YCLMGRIDDARKLFVSIESEGCIPD-TSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKF 402 (531)
Q Consensus 324 ~~~~g~~~~a~~~~~~~~~~g~~p~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 402 (531)
+.+.|++++|..+|+++.+.... + ...|..++..+.+.|++++|..+|++..+.. |.
T Consensus 331 ~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~--~~------------------- 388 (530)
T 2ooe_A 331 EESRMKYEKVHSIYNRLLAIEDI-DPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA--RT------------------- 388 (530)
T ss_dssp HHHTTCHHHHHHHHHHHHHSSSS-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT--TC-------------------
T ss_pred HHhcCCHHHHHHHHHHHhCcccc-CchHHHHHHHHHHHHhcCHHHHHHHHHHHHhcc--CC-------------------
Confidence 99999999999999999986322 3 2578888888888999999999999987642 21
Q ss_pred CCCHHHHHHHHHH-HHcCCChHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhHHHHHHHH
Q 038190 403 ELDLTVFNCLVDG-LCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECLKAIELL 481 (531)
Q Consensus 403 ~~~~~~~~~l~~~-~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~i~~~~~a~~~~ 481 (531)
+...|...+.. +...|++++|..+|++..+.. +-++..|..++..+.+.|+.++|..+|++...
T Consensus 389 --~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~-p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~------------ 453 (530)
T 2ooe_A 389 --RHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLT------------ 453 (530)
T ss_dssp --CTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHH------------
T ss_pred --chHHHHHHHHHHHHHcCChhHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHh------------
Confidence 23333333222 336899999999999988752 23578888999999899999888777765433
Q ss_pred HHHHHcC-CCCC--HHHHHHHHHHHhccCChhHHHhhHHHhhhcch
Q 038190 482 HKMAKRY-VKPD--EITVSILEELLNKDENCHECMNLLPSFLSRNQ 524 (531)
Q Consensus 482 ~~~~~~~-~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 524 (531)
.. ..|+ ...|..++....+.|+.+.+..+.+++....+
T Consensus 454 -----~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~~p 494 (530)
T 2ooe_A 454 -----SGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFR 494 (530)
T ss_dssp -----SCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHTH
T ss_pred -----ccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 22 2332 45788888888889999999988887765544
No 20
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.81 E-value=6.1e-18 Score=159.83 Aligned_cols=289 Identities=13% Similarity=0.024 Sum_probs=229.2
Q ss_pred CcCCHHHHHH-HHHHHHHcCCC---CChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCcc
Q 038190 64 GEVELNDALC-FFNYMIHMQPT---PFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVS 139 (531)
Q Consensus 64 ~~g~~~~A~~-~~~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~ 139 (531)
..|++++|.. .|+......+. .+...|..+...+.+.|++++|+..|+++.+.. +.+..++..+..++...|+++
T Consensus 37 ~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~ 115 (368)
T 1fch_A 37 WLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQEL 115 (368)
T ss_dssp ---------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHH
Confidence 3468999998 88877664432 245678899999999999999999999999875 567889999999999999999
Q ss_pred hHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCCCcHHhHHH---------------HHH
Q 038190 140 DAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYAS---------------IID 204 (531)
Q Consensus 140 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~---------------l~~ 204 (531)
+|...|+++++..+ .+..++..+..+|...|++++|+..|+++.... |. +...+.. .+.
T Consensus 116 ~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~---~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (368)
T 1fch_A 116 LAISALRRCLELKP-DNQTALMALAVSFTNESLQRQACEILRDWLRYT--PA---YAHLVTPAEEGAGGAGLGPSKRILG 189 (368)
T ss_dssp HHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS--TT---TGGGCC---------------CTTH
T ss_pred HHHHHHHHHHhcCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cC---cHHHHHHHHHHhhhhcccHHHHHHH
Confidence 99999999998864 378899999999999999999999999999864 32 2222221 233
Q ss_pred HHHhcCChhHHHHHHHHHhhCCCCC-CHhhHHHHHHHHHhcCChhhhhcchHHHHHHHHHHHhCCCCCCccccCCHhhHH
Q 038190 205 GLCKDGFVNKVRVLFLDMKGRGIYP-DAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYC 283 (531)
Q Consensus 205 ~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (531)
.+...|++++|...|+++.+..... +..++..+...+...|++++|.. .++...... +.+..++.
T Consensus 190 ~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~-------~~~~al~~~-------~~~~~~~~ 255 (368)
T 1fch_A 190 SLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVD-------CFTAALSVR-------PNDYLLWN 255 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHH-------HHHHHHHHC-------TTCHHHHH
T ss_pred HHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHH-------HHHHHHHhC-------cCCHHHHH
Confidence 3448899999999999998753221 57888999999999999999988 555555543 34577899
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC----------CHHHHH
Q 038190 284 SIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIP----------DTSSYN 353 (531)
Q Consensus 284 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p----------~~~~~~ 353 (531)
.+...+...|++++|...|+++.+.. +.+...+..+..+|.+.|++++|...|+++.+..... ...+|.
T Consensus 256 ~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~ 334 (368)
T 1fch_A 256 KLGATLANGNQSEEAVAAYRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWS 334 (368)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHH
Confidence 99999999999999999999998763 3467889999999999999999999999987653221 268899
Q ss_pred HHHHHHHhcCCHHHHHHHHHH
Q 038190 354 TLINSYSKIEKVEEALSLYGE 374 (531)
Q Consensus 354 ~li~~~~~~~~~~~a~~~~~~ 374 (531)
.+..+|...|++++|..++.+
T Consensus 335 ~l~~~~~~~g~~~~A~~~~~~ 355 (368)
T 1fch_A 335 TLRLALSMLGQSDAYGAADAR 355 (368)
T ss_dssp HHHHHHHHHTCGGGHHHHHTT
T ss_pred HHHHHHHHhCChHhHHHhHHH
Confidence 999999999999999988764
No 21
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.81 E-value=8.8e-18 Score=158.74 Aligned_cols=304 Identities=11% Similarity=-0.028 Sum_probs=227.1
Q ss_pred HHccCCHHHHHH-HHHHHHhCCC---CCCHhhHHHHHHHHHccCCcchHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCC
Q 038190 97 LAGKKYYVNFIC-LSERLNTIGL---LPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGK 172 (531)
Q Consensus 97 ~~~~~~~~~a~~-~~~~m~~~g~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 172 (531)
+...|++++|++ .+++...... ..+...+..+...+.+.|++++|...|+++++..+ .+..++..+..++...|+
T Consensus 35 ~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~ 113 (368)
T 1fch_A 35 HPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDP-KHMEAWQYLGTTQAENEQ 113 (368)
T ss_dssp -----------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCT-TCHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCcC
Confidence 334578999998 8887654421 11356788899999999999999999999999864 377899999999999999
Q ss_pred hHHHHHHHHHHHHcCCCCCCCCcHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHhhHHH---------------H
Q 038190 173 FTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNS---------------L 237 (531)
Q Consensus 173 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~---------------l 237 (531)
+++|+..|+++... .|+ +..++..+...+...|++++|...|+++...... +...+.. .
T Consensus 114 ~~~A~~~~~~al~~--~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 187 (368)
T 1fch_A 114 ELLAISALRRCLEL--KPD---NQTALMALAVSFTNESLQRQACEILRDWLRYTPA-YAHLVTPAEEGAGGAGLGPSKRI 187 (368)
T ss_dssp HHHHHHHHHHHHHH--CTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTT-TGGGCC---------------CT
T ss_pred HHHHHHHHHHHHhc--CCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHhhhhcccHHHHH
Confidence 99999999999987 342 7889999999999999999999999999876432 2222211 2
Q ss_pred HHHHHhcCChhhhhcchHHHHHHHHHHHhCCCCCCccccCCHhhHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHH
Q 038190 238 IRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVY 317 (531)
Q Consensus 238 i~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 317 (531)
+..+...|++++|.. .++.+....+ ..++..++..+...+...|++++|...|+++.+.. +.+..++
T Consensus 188 ~~~~~~~~~~~~A~~-------~~~~a~~~~p-----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~ 254 (368)
T 1fch_A 188 LGSLLSDSLFLEVKE-------LFLAAVRLDP-----TSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLW 254 (368)
T ss_dssp THHHHHHHHHHHHHH-------HHHHHHHHST-----TSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred HHHHhhcccHHHHHH-------HHHHHHHhCc-----CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHH
Confidence 333346777777777 7777666541 11157889999999999999999999999998763 3367889
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHH
Q 038190 318 SSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTL 397 (531)
Q Consensus 318 ~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 397 (531)
..+...|...|++++|...|+++.+... .+...+..+...|.+.|++++|...|+++.+...... . -
T Consensus 255 ~~l~~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~--~----------~ 321 (368)
T 1fch_A 255 NKLGATLANGNQSEEAVAAYRRALELQP-GYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSR--G----------P 321 (368)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC---------------
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCC--C----------c
Confidence 9999999999999999999999988753 3678899999999999999999999998876321100 0 0
Q ss_pred HhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHhh
Q 038190 398 HNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLP 433 (531)
Q Consensus 398 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 433 (531)
..........+|..+..+|...|++++|..++.+..
T Consensus 322 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 357 (368)
T 1fch_A 322 RGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDL 357 (368)
T ss_dssp ---CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTCH
T ss_pred cccccchhhHHHHHHHHHHHHhCChHhHHHhHHHHH
Confidence 000011136789999999999999999998887554
No 22
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.79 E-value=7.6e-18 Score=158.98 Aligned_cols=273 Identities=12% Similarity=-0.015 Sum_probs=173.5
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCCCcHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHhhHHHHH
Q 038190 159 TLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLI 238 (531)
Q Consensus 159 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li 238 (531)
.+..+...+.+.|++++|+..|+++... .|+ +..+|..+...|...|++++|...|+++.+.. +.+..++..+.
T Consensus 67 ~~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~---~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~ 140 (365)
T 4eqf_A 67 GAFEEGLKRLKEGDLPVTILFMEAAILQ--DPG---DAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALA 140 (365)
T ss_dssp THHHHHHHHHHHTCHHHHHHHHHHHHHH--CTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHh--CcC---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHH
Confidence 3444455555555555555555555443 221 34445555555555555555555555544432 11344445555
Q ss_pred HHHHhcCChhhhhcchHHHHHHHHHHHhCCCCCCccccCCHhhHHHHHHHHhcCCCHHHHHHHHHHHHhCCCC-CCHHHH
Q 038190 239 RVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGII-PDVVVY 317 (531)
Q Consensus 239 ~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~ 317 (531)
..|...|++++|...+++++++.......... .......+..+...+...|++++|..+|+++.+.... .+..++
T Consensus 141 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 216 (365)
T 4eqf_A 141 VSYTNTSHQQDACEALKNWIKQNPKYKYLVKN----KKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQ 216 (365)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCHHHHCC-----------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHH
T ss_pred HHHHccccHHHHHHHHHHHHHhCccchHHHhh----hccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHH
Confidence 55555555555555222222221111000000 0011234556688899999999999999999887422 168899
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHH
Q 038190 318 SSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTL 397 (531)
Q Consensus 318 ~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 397 (531)
..+...|...|++++|...|+++.+.... +..+|..+..+|...|++++|...|+++.+.. |+
T Consensus 217 ~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~-------------- 279 (365)
T 4eqf_A 217 TGLGVLFHLSGEFNRAIDAFNAALTVRPE-DYSLWNRLGATLANGDRSEEAVEAYTRALEIQ--PG-------------- 279 (365)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TT--------------
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CC--------------
Confidence 99999999999999999999999987543 68899999999999999999999999988742 32
Q ss_pred HhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHhhhCCC---C--------CcHHHHHHHHHHHHHcCCHHHHHHHHH
Q 038190 398 HNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGP---E--------PNVVTYTVMICGLCIEGGIEKAYDLLP 465 (531)
Q Consensus 398 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~---~--------p~~~~~~~l~~~~~~~g~~~~A~~~~~ 465 (531)
+..++..+..+|...|++++|...|+++.+... . .+...|..+..++...|+.+.+.++.+
T Consensus 280 -------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 351 (365)
T 4eqf_A 280 -------FIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANL 351 (365)
T ss_dssp -------CHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHT
T ss_pred -------chHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 688999999999999999999999999986310 1 136788999999999999998876654
No 23
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.78 E-value=3.3e-17 Score=154.61 Aligned_cols=268 Identities=12% Similarity=-0.014 Sum_probs=216.9
Q ss_pred CChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCcchHHHHHHHHHHCCCCCChhhHHHHH
Q 038190 85 PFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLI 164 (531)
Q Consensus 85 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li 164 (531)
.+...|..+...+.+.|++++|+.+|+++.+.. +.+..++..+..++...|++++|...|+++++..+ .+..++..+.
T Consensus 63 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~ 140 (365)
T 4eqf_A 63 KDWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQP-NNLKALMALA 140 (365)
T ss_dssp TTCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHH
T ss_pred cchhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CCHHHHHHHH
Confidence 355679999999999999999999999999875 56788999999999999999999999999998753 3678999999
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCCCCCcHH----------hHHHHHHHHHhcCChhHHHHHHHHHhhCCCC-CCHhh
Q 038190 165 RGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVI----------CYASIIDGLCKDGFVNKVRVLFLDMKGRGIY-PDAFV 233 (531)
Q Consensus 165 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~----------~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~-p~~~~ 233 (531)
.+|...|++++|+..|+++.... |. +.. .+..+...+...|++++|...|+++.+.... ++..+
T Consensus 141 ~~~~~~g~~~~A~~~~~~al~~~--p~---~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 215 (365)
T 4eqf_A 141 VSYTNTSHQQDACEALKNWIKQN--PK---YKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDL 215 (365)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC--HH---HHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHH
T ss_pred HHHHccccHHHHHHHHHHHHHhC--cc---chHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHH
Confidence 99999999999999999998753 21 222 3344588899999999999999999876322 25788
Q ss_pred HHHHHHHHHhcCChhhhhcchHHHHHHHHHHHhCCCCCCccccCCHhhHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCC
Q 038190 234 YNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPD 313 (531)
Q Consensus 234 ~~~li~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 313 (531)
+..+...+...|++++|.. .++...... +.+..+|..+..+|...|++++|...|+++.+.. +.+
T Consensus 216 ~~~l~~~~~~~g~~~~A~~-------~~~~al~~~-------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~ 280 (365)
T 4eqf_A 216 QTGLGVLFHLSGEFNRAID-------AFNAALTVR-------PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQ-PGF 280 (365)
T ss_dssp HHHHHHHHHHHTCHHHHHH-------HHHHHHHHC-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTC
T ss_pred HHHHHHHHHHCCCHHHHHH-------HHHHHHHhC-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCc
Confidence 9999999999999999988 666555543 4567899999999999999999999999998863 335
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-----------CCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 038190 314 VVVYSSLIDGYCLMGRIDDARKLFVSIESEGCI-----------PDTSSYNTLINSYSKIEKVEEALSLYGE 374 (531)
Q Consensus 314 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~-----------p~~~~~~~li~~~~~~~~~~~a~~~~~~ 374 (531)
..++..+..+|...|++++|...|+++.+.... .+...|..+..++...|+.+.+..+..+
T Consensus 281 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 281 IRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 888999999999999999999999998765311 1357889999999999999988776654
No 24
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.77 E-value=2.5e-17 Score=152.12 Aligned_cols=373 Identities=13% Similarity=0.059 Sum_probs=171.1
Q ss_pred cCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCcchHHHH
Q 038190 65 EVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVA 144 (531)
Q Consensus 65 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~ 144 (531)
.|++++|.++++++ .. ..+|..++.++.+.|++++|++.|.+. +|..+|..++.++...|++++|...
T Consensus 16 ~~~ld~A~~fae~~----~~--~~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~y 83 (449)
T 1b89_A 16 IGNLDRAYEFAERC----NE--PAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKY 83 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccCHHHHHHHHHhC----CC--hHHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHHH
Confidence 34899999999998 22 349999999999999999999999763 5777999999999999999999998
Q ss_pred HHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCCCcHHhHHHHHHHHHhcCChhHHHHHHHHHhh
Q 038190 145 LGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKG 224 (531)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 224 (531)
++...+. .+++.+.+.++.+|.+.|+++++.++++ . |+..+|+.+...|...|.+++|..+|..+
T Consensus 84 l~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~----pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a-- 148 (449)
T 1b89_A 84 LQMARKK--ARESYVETELIFALAKTNRLAELEEFIN-------G----PNNAHIQQVGDRCYDEKMYDAAKLLYNNV-- 148 (449)
T ss_dssp ---------------------------CHHHHTTTTT-------C----C----------------CTTTHHHHHHHT--
T ss_pred HHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------C----CcHHHHHHHHHHHHHcCCHHHHHHHHHHh--
Confidence 8887764 4567889999999999999999888774 2 46679999999999999999999999977
Q ss_pred CCCCCCHhhHHHHHHHHHhcCChhhhhcchHHHHHHHHHHHhCCCCCCccccCCHhhHHHHHHHHhcCCCHHHHHHHHHH
Q 038190 225 RGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLD 304 (531)
Q Consensus 225 ~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 304 (531)
..|..++.++.+.|++++|.. .+..+ .++.+|..++.+|...|+++.|......
T Consensus 149 -------~n~~~LA~~L~~Lg~yq~AVe-------a~~KA------------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~ 202 (449)
T 1b89_A 149 -------SNFGRLASTLVHLGEYQAAVD-------GARKA------------NSTRTWKEVCFACVDGKEFRLAQMCGLH 202 (449)
T ss_dssp -------TCHHHHHHHHHTTTCHHHHHH-------HHHHH------------TCHHHHHHHHHHHHHTTCHHHHHHTTTT
T ss_pred -------hhHHHHHHHHHHhccHHHHHH-------HHHHc------------CCchhHHHHHHHHHHcCcHHHHHHHHHH
Confidence 369999999999999999888 66654 1578999999999999999999655443
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCc
Q 038190 305 MKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDN 384 (531)
Q Consensus 305 ~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 384 (531)
+..++.-...++..|.+.|.+++|..+++...... ......|+-+..+|++- ++++..+.++..... +.
T Consensus 203 -----L~~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky-~p~k~~ehl~~~~~~-in--- 271 (449)
T 1b89_A 203 -----IVVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKF-KPQKMREHLELFWSR-VN--- 271 (449)
T ss_dssp -----TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTT-CHHHHHHHHHHHSTT-SC---
T ss_pred -----HHhCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHH-hc---
Confidence 22344446678999999999999999999998765 44778888888888765 344444333322211 11
Q ss_pred ccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHhhhCC-----------CCCcHHHHHHHHHHHH-
Q 038190 385 SCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYG-----------PEPNVVTYTVMICGLC- 452 (531)
Q Consensus 385 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g-----------~~p~~~~~~~l~~~~~- 452 (531)
+...++.. . +...|..++..|..-++++.|....-+-...- -..+...|-..+.-|.
T Consensus 272 --i~k~~~~~---~------~~~~w~e~~~ly~~~~e~d~A~~tm~~h~~~a~~~~~f~~~~~kv~n~elyYkai~fyl~ 340 (449)
T 1b89_A 272 --IPKVLRAA---E------QAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYLE 340 (449)
T ss_dssp --HHHHHHHH---H------TTTCHHHHHHHHHHTTCHHHHHHHHHHSTTTTCCHHHHHHHHHHCSSTHHHHHHHHHHHH
T ss_pred --CcHHHHHH---H------HHHHHHHHHHHHHhhchHHHHHHHHHhCChhhhhhHHHHHHHhchhHHHHHHHHHHHHHh
Confidence 11111111 1 45689999999999999998876443322110 0123444433343333
Q ss_pred --------------HcCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChhHHHhhHHH
Q 038190 453 --------------IEGGIEKAYDLLPDMEEKIRECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLLPS 518 (531)
Q Consensus 453 --------------~~g~~~~A~~~~~~~~~~i~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 518 (531)
..=+...++++|++. +...-...++..+... .+..+-.++-+.|...++++.-+.-++.
T Consensus 341 ~~p~~l~~ll~~l~~~ld~~r~v~~~~~~----~~l~l~~~yl~~v~~~---n~~~vnealn~l~ieeed~~~lr~si~~ 413 (449)
T 1b89_A 341 FKPLLLNDLLMVLSPRLDHTRAVNYFSKV----KQLPLVKPYLRSVQNH---NNKSVNESLNNLFITEEDYQALRTSIDA 413 (449)
T ss_dssp HCGGGHHHHHHHHGGGCCHHHHHHHHHHT----TCTTTTHHHHHHHHTT---CCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHhccCcHHHHHHHHHc----CCcHHHHHHHHHHHHh---hHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 333333333333221 3333334444444422 2445556677777777777776666654
Q ss_pred h
Q 038190 519 F 519 (531)
Q Consensus 519 ~ 519 (531)
.
T Consensus 414 ~ 414 (449)
T 1b89_A 414 Y 414 (449)
T ss_dssp C
T ss_pred h
Confidence 3
No 25
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.77 E-value=1.4e-14 Score=143.64 Aligned_cols=372 Identities=10% Similarity=0.011 Sum_probs=255.7
Q ss_pred CcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHH-HccCCHHHHHH----HHHHHHhC-CCCC-CHhhHHHHHHHHHc--
Q 038190 64 GEVELNDALCFFNYMIHMQPTPFMPSFNSLLGAL-AGKKYYVNFIC----LSERLNTI-GLLP-DFVSLNILMNCFCK-- 134 (531)
Q Consensus 64 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~-~~~~~~~~a~~----~~~~m~~~-g~~~-~~~~~~~li~~~~~-- 134 (531)
..|+++.|..+|++++... |+...|...+... ...|+++.|.+ +|++.... |..| +...|...+....+
T Consensus 58 ~~~~~~~a~~~~~ral~~~--p~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~ 135 (530)
T 2ooe_A 58 KAKNYDKVEKLFQRCLMKV--LHIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVE 135 (530)
T ss_dssp HTTCHHHHHHHHHHHTTTC--CCHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSC
T ss_pred hcCCHHHHHHHHHHHHhcC--CChHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCC
Confidence 3569999999999998855 5777888877533 45677776665 77776543 5433 45678877776654
Q ss_pred -------cCCcchHHHHHHHHHHCCCCCChhhHHHHHHHH-------------HhcCChHHHHHHHHHHHHc--CCC---
Q 038190 135 -------MIGVSDAFVALGRILRKVFSPDVVTLGCLIRGL-------------CMQGKFTEASGLFTKFVAF--DCR--- 189 (531)
Q Consensus 135 -------~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~-------------~~~g~~~~a~~~~~~~~~~--~~~--- 189 (531)
.|+++.|..+|++.++.........|....... ...+++..|..++.++... +..
T Consensus 136 ~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~ 215 (530)
T 2ooe_A 136 AVGSYAENQRITAVRRVYQRGCVNPMINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNA 215 (530)
T ss_dssp CCSSTTHHHHHHHHHHHHHHHTTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSS
T ss_pred CcccHHHHhHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhcccc
Confidence 688999999999999831111123443322211 1234567777777663211 111
Q ss_pred CCCCCc--------HHhHHHHHHHHHhc----CCh----hHHHHHHHHHhhCCCCCCHhhHHHHHHHHHh-------cCC
Q 038190 190 PNVIPN--------VICYASIIDGLCKD----GFV----NKVRVLFLDMKGRGIYPDAFVYNSLIRVYCC-------AVN 246 (531)
Q Consensus 190 ~~~~~~--------~~~~~~l~~~~~~~----~~~----~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~-------~~~ 246 (531)
+...|+ ...|...+...... ++. +.+..+|++.... .+-+...|......+.+ .|+
T Consensus 216 ~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~-~p~~~~~w~~~~~~~~~~~~~~~~~g~ 294 (530)
T 2ooe_A 216 PSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLV-LGHHPDIWYEAAQYLEQSSKLLAEKGD 294 (530)
T ss_dssp CCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred ccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhchhhhhccc
Confidence 011122 34566655443332 222 3677889888764 23367778877777765 677
Q ss_pred hhhhhcchHHHHHHHHHHHhCCCCCCccccCCHhhHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHH
Q 038190 247 WEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPD--VVVYSSLIDGY 324 (531)
Q Consensus 247 ~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~ll~~~ 324 (531)
++.+....++|+.+++.....- .+.+...|..++..+.+.|++++|..+|+.+.+. .|+ ...|..++..+
T Consensus 295 ~~~a~~~~~~A~~~~~~Al~~~------~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~ 366 (530)
T 2ooe_A 295 MNNAKLFSDEAANIYERAISTL------LKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFA 366 (530)
T ss_dssp CHHHHHHHHHHHHHHHHHTTTT------CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHH
T ss_pred hhhhhhhhHHHHHHHHHHHHHh------CcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCc--cccCchHHHHHHHHHH
Confidence 7633222334555888877532 2446788999999999999999999999999986 443 35888888888
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHH-HHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHhCCCC
Q 038190 325 CLMGRIDDARKLFVSIESEGCIPDTSSYNTLIN-SYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFE 403 (531)
Q Consensus 325 ~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 403 (531)
.+.|++++|..+|++..+.... +...|..... .+...|+.++|..+|+...+.. |+
T Consensus 367 ~~~~~~~~A~~~~~~Al~~~~~-~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~--p~-------------------- 423 (530)
T 2ooe_A 367 RRAEGIKSGRMIFKKAREDART-RHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY--GD-------------------- 423 (530)
T ss_dssp HHHHHHHHHHHHHHHHHTCTTC-CTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH--TT--------------------
T ss_pred HHhcCHHHHHHHHHHHHhccCC-chHHHHHHHHHHHHHcCChhHHHHHHHHHHHHC--CC--------------------
Confidence 9999999999999999886322 2333332222 2346899999999999887642 32
Q ss_pred CCHHHHHHHHHHHHcCCChHHHHHHHHHhhhCC-CCCc--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 038190 404 LDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYG-PEPN--VVTYTVMICGLCIEGGIEKAYDLLPDMEEK 470 (531)
Q Consensus 404 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g-~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 470 (531)
++..|..++..+.+.|+.++|..+|++....+ ..|+ ...|...+......|+.+.+.++++++.+.
T Consensus 424 -~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~ 492 (530)
T 2ooe_A 424 -IPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 492 (530)
T ss_dssp -CHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHH
T ss_pred -CHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 78899999999999999999999999999853 2232 447888888888999999998888776554
No 26
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.76 E-value=1.7e-16 Score=147.05 Aligned_cols=267 Identities=12% Similarity=-0.031 Sum_probs=210.0
Q ss_pred ChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCcchHHHHHHHHHHCCCCCChhhHHHHHH
Q 038190 86 FMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIR 165 (531)
Q Consensus 86 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 165 (531)
+...|..+...+...|++++|+.+|+++.+.. +.+..++..+..++...|++++|...++++.+..+ .+..++..+..
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~ 97 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDP-KDIAVHAALAV 97 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCc-CCHHHHHHHHH
Confidence 44566777788888889999999998887764 44677888888888888999999999988887743 36678888888
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCCCCCcHHhHHHH--------------HH-HHHhcCChhHHHHHHHHHhhCCCCCC
Q 038190 166 GLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASI--------------ID-GLCKDGFVNKVRVLFLDMKGRGIYPD 230 (531)
Q Consensus 166 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l--------------~~-~~~~~~~~~~a~~~~~~m~~~g~~p~ 230 (531)
.+...|++++|+..++++.... |. +...+..+ .. .+...|++++|...++++.+... .+
T Consensus 98 ~~~~~~~~~~A~~~~~~~~~~~--~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~ 171 (327)
T 3cv0_A 98 SHTNEHNANAALASLRAWLLSQ--PQ---YEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNP-ND 171 (327)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTS--TT---TTTC--------------------CCTTSHHHHHHHHHHHHHHHHHST-TC
T ss_pred HHHHcCCHHHHHHHHHHHHHhC--Cc---cHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCC-CC
Confidence 8889999999999998888753 32 23333333 22 37778899999999999887532 26
Q ss_pred HhhHHHHHHHHHhcCChhhhhcchHHHHHHHHHHHhCCCCCCccccCCHhhHHHHHHHHhcCCCHHHHHHHHHHHHhCCC
Q 038190 231 AFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGI 310 (531)
Q Consensus 231 ~~~~~~li~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 310 (531)
...+..+...+...|++++|.. .++...... +.+..++..+...+...|++++|...++++.+..
T Consensus 172 ~~~~~~la~~~~~~~~~~~A~~-------~~~~~~~~~-------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~- 236 (327)
T 3cv0_A 172 AQLHASLGVLYNLSNNYDSAAA-------NLRRAVELR-------PDDAQLWNKLGATLANGNRPQEALDAYNRALDIN- 236 (327)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHH-------HHHHHHHHC-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHhccHHHHHH-------HHHHHHHhC-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-
Confidence 7888888999999999888888 666655543 3457789999999999999999999999988763
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC-----------CHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 038190 311 IPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIP-----------DTSSYNTLINSYSKIEKVEEALSLYGEM 375 (531)
Q Consensus 311 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p-----------~~~~~~~li~~~~~~~~~~~a~~~~~~~ 375 (531)
+.+..++..+...|...|++++|...|+++.+..... +...|..+..+|.+.|++++|..++++.
T Consensus 237 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 312 (327)
T 3cv0_A 237 PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQN 312 (327)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCC
T ss_pred CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 3367889999999999999999999999988764332 4678889999999999999999988653
No 27
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.76 E-value=2.7e-15 Score=146.80 Aligned_cols=225 Identities=13% Similarity=-0.067 Sum_probs=122.4
Q ss_pred CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 038190 292 DVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSL 371 (531)
Q Consensus 292 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~ 371 (531)
.+++++|.+++++..... +.+..++..+...|...|++++|...+++..+..+. +..++..+..+|...+....+...
T Consensus 226 ~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~y~~~~~~~~~~~~ 303 (472)
T 4g1t_A 226 GEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPN-NAYLHCQIGCCYRAKVFQVMNLRE 303 (472)
T ss_dssp ----CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHC--
T ss_pred hhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCC-hHHHHHHHHHHHHHHHHHhhhHHH
Confidence 345566666666655542 234555666666666777777777777666665332 344455554444321111000000
Q ss_pred HHHHHhCCCCCCcccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHhhhCCCCCcH--HHHHHHHH
Q 038190 372 YGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNV--VTYTVMIC 449 (531)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~--~~~~~l~~ 449 (531)
... ..........+.|...++.+.+... .+..++..+...|...|++++|...|++..+....+.. ..+..+..
T Consensus 304 ~~~---~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~ 379 (472)
T 4g1t_A 304 NGM---YGKRKLLELIGHAVAHLKKADEAND-NLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGN 379 (472)
T ss_dssp -------CHHHHHHHHHHHHHHHHHHHHHCT-TTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHH
T ss_pred HHH---HHHHHHHhhHHHHHHHHHHHhhcCC-chhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Confidence 000 0000001123444555555444332 25567889999999999999999999999885333221 12233332
Q ss_pred -HHHHcCCHHHHHHHHHHHHHH-------HhhHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChhHHHhhHHHhhh
Q 038190 450 -GLCIEGGIEKAYDLLPDMEEK-------IRECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLLPSFLS 521 (531)
Q Consensus 450 -~~~~~g~~~~A~~~~~~~~~~-------i~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 521 (531)
.+...|++++|++.|++..+. .+....+..++++.+... +.+..+|..++.+|...|++++|++.+++...
T Consensus 380 ~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~~~~~l~~~~~~~l~~~-p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe 458 (472)
T 4g1t_A 380 FQLYQMKCEDKAIHHFIEGVKINQKSREKEKMKDKLQKIAKMRLSKN-GADSEALHVLAFLQELNEKMQQADEDSERGLE 458 (472)
T ss_dssp HHHHTSSCHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHHHHHC-C-CTTHHHHHHHHHHHHHHCC-----------
T ss_pred HHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 234689999999999988765 244455556666666544 34667899999999999999999999998665
Q ss_pred cc
Q 038190 522 RN 523 (531)
Q Consensus 522 ~~ 523 (531)
.+
T Consensus 459 ~~ 460 (472)
T 4g1t_A 459 SG 460 (472)
T ss_dssp --
T ss_pred cC
Confidence 43
No 28
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.76 E-value=4.9e-16 Score=144.01 Aligned_cols=278 Identities=10% Similarity=-0.032 Sum_probs=196.6
Q ss_pred hhHHHHHHHHHccCCcchHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCCCcHHhHHHH
Q 038190 123 VSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASI 202 (531)
Q Consensus 123 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l 202 (531)
..+..+...+...|++++|..+|+++.+..+. +..++..+..++...|++++|...|+++... .|. +..++..+
T Consensus 22 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~---~~~~~~~l 95 (327)
T 3cv0_A 22 ENPMEEGLSMLKLANLAEAALAFEAVCQAAPE-REEAWRSLGLTQAENEKDGLAIIALNHARML--DPK---DIAVHAAL 95 (327)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTT---CHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CcC---CHHHHHHH
Confidence 34556666666777777777777777665432 5556666667777777777777777776665 231 45566666
Q ss_pred HHHHHhcCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChhhhhcchHHHHHHHHHHHhCCCCCCccccCCHhhH
Q 038190 203 IDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSY 282 (531)
Q Consensus 203 ~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (531)
...+...|++++|...|+++.+.... +...+..+.. ..|+....
T Consensus 96 a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~-----------------------------------~~~~~~~~ 139 (327)
T 3cv0_A 96 AVSHTNEHNANAALASLRAWLLSQPQ-YEQLGSVNLQ-----------------------------------ADVDIDDL 139 (327)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTSTT-TTTC-------------------------------------------------
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCc-cHHHHHHHhH-----------------------------------HHHHHHHH
Confidence 77777777777777777666654211 1111111100 00111111
Q ss_pred HHHHH--HHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 038190 283 CSIIN--SLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYS 360 (531)
Q Consensus 283 ~~ll~--~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~ 360 (531)
..+.. .+...|++++|..+++++.+.. +.+...+..+...|...|++++|...++++.+.... +...|..+...|.
T Consensus 140 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~ 217 (327)
T 3cv0_A 140 NVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPD-DAQLWNKLGATLA 217 (327)
T ss_dssp ------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHH
Confidence 12212 3778889999999999998764 337888999999999999999999999999887533 6788999999999
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHhhhCCCCC-
Q 038190 361 KIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEP- 439 (531)
Q Consensus 361 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p- 439 (531)
..|++++|...++++.+.. |+ +..++..+..+|...|++++|...++++.+.....
T Consensus 218 ~~~~~~~A~~~~~~a~~~~--~~---------------------~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~ 274 (327)
T 3cv0_A 218 NGNRPQEALDAYNRALDIN--PG---------------------YVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGT 274 (327)
T ss_dssp HTTCHHHHHHHHHHHHHHC--TT---------------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSC
T ss_pred HcCCHHHHHHHHHHHHHcC--CC---------------------CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccc
Confidence 9999999999999987742 22 67889999999999999999999999998742221
Q ss_pred ----------cHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 038190 440 ----------NVVTYTVMICGLCIEGGIEKAYDLLPDM 467 (531)
Q Consensus 440 ----------~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 467 (531)
+...|..+..++...|++++|..++++.
T Consensus 275 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 312 (327)
T 3cv0_A 275 TPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQN 312 (327)
T ss_dssp C-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCC
T ss_pred cccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 4778899999999999999998888643
No 29
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.76 E-value=7.6e-15 Score=151.31 Aligned_cols=351 Identities=12% Similarity=0.086 Sum_probs=207.7
Q ss_pred CCHHHHHHHHHHHHHcCC--CCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCcchHHH
Q 038190 66 VELNDALCFFNYMIHMQP--TPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFV 143 (531)
Q Consensus 66 g~~~~A~~~~~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~ 143 (531)
|.+.+|+++++++.-.+. .-+....+.++.+..+. +..+..++.+++... ....+...+...|.+++|..
T Consensus 999 glp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~-------d~~eIA~Iai~lglyEEAf~ 1070 (1630)
T 1xi4_A 999 DLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNY-------DAPDIANIAISNELFEEAFA 1070 (1630)
T ss_pred CCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhc-------cHHHHHHHHHhCCCHHHHHH
Confidence 366666666666653211 01234445555554444 445555554444311 12335555666677777777
Q ss_pred HHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCCCcHHhHHHHHHHHHhcCChhHHHHHHHHHh
Q 038190 144 ALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMK 223 (531)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 223 (531)
+|++.. ......+.++. ..+++++|.++.+++. +..+|..+..++...|++++|++.|.+.
T Consensus 1071 IYkKa~-----~~~~A~~VLie---~i~nldrAiE~Aervn----------~p~vWsqLAKAql~~G~~kEAIdsYiKA- 1131 (1630)
T 1xi4_A 1071 IFRKFD-----VNTSAVQVLIE---HIGNLDRAYEFAERCN----------EPAVWSQLAKAQLQKGMVKEAIDSYIKA- 1131 (1630)
T ss_pred HHHHcC-----CHHHHHHHHHH---HHhhHHHHHHHHHhcC----------CHHHHHHHHHHHHhCCCHHHHHHHHHhc-
Confidence 776642 11122222222 5566777777666542 4556777777777777777777777553
Q ss_pred hCCCCCCHhhHHHHHHHHHhcCChhhhhcchHHHHHHHHHHHhCCCCCCccccCCHhhHHHHHHHHhcCCCHHHHHHHHH
Q 038190 224 GRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFL 303 (531)
Q Consensus 224 ~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~ 303 (531)
-|...|..++.++.+.|+++++.+ .+....+.. ++....+.++.+|++.+++++...+.
T Consensus 1132 -----dD~say~eVa~~~~~lGkyEEAIe-------yL~mArk~~--------~e~~Idt~LafaYAKl~rleele~fI- 1190 (1630)
T 1xi4_A 1132 -----DDPSSYMEVVQAANTSGNWEELVK-------YLQMARKKA--------RESYVETELIFALAKTNRLAELEEFI- 1190 (1630)
T ss_pred -----CChHHHHHHHHHHHHcCCHHHHHH-------HHHHHHhhc--------ccccccHHHHHHHHhhcCHHHHHHHH-
Confidence 256666667777777777777766 443333322 22223334666777777666433332
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 038190 304 DMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD 383 (531)
Q Consensus 304 ~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~ 383 (531)
+ .++...|..+...|...|++++|..+|... ..|..+..+|.+.|++++|.+.+++..
T Consensus 1191 ---~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA~------- 1248 (1630)
T 1xi4_A 1191 ---N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKAN------- 1248 (1630)
T ss_pred ---h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHhC-------
Confidence 1 234555566667777777777777777663 356777777777777777777776542
Q ss_pred cccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHcCCHHHHHHH
Q 038190 384 NSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDL 463 (531)
Q Consensus 384 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~ 463 (531)
+..+|..+..+|...|++..|......+. .++..+..++..|.+.|.+++|+++
T Consensus 1249 ---------------------n~~aWkev~~acve~~Ef~LA~~cgl~Ii-----v~~deLeeli~yYe~~G~feEAI~L 1302 (1630)
T 1xi4_A 1249 ---------------------STRTWKEVCFACVDGKEFRLAQMCGLHIV-----VHADELEELINYYQDRGYFEELITM 1302 (1630)
T ss_pred ---------------------CHHHHHHHHHHHhhhhHHHHHHHHHHhhh-----cCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 45666666677777777666666554322 2455566677777777777777777
Q ss_pred HHHHHHH-------------------HhhHHHHHHHHHHHHHcCCCC------CHHHHHHHHHHHhccCChhHHHh
Q 038190 464 LPDMEEK-------------------IRECLKAIELLHKMAKRYVKP------DEITVSILEELLNKDENCHECMN 514 (531)
Q Consensus 464 ~~~~~~~-------------------i~~~~~a~~~~~~~~~~~~~~------~~~~~~~l~~~~~~~g~~~~a~~ 514 (531)
++..... -++..+++++|..-. .+++ +...|.-++..|.+.|++++|..
T Consensus 1303 lE~aL~LeraH~gmftELaiLyaKy~peklmEhlk~f~~ri--ni~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~ 1376 (1630)
T 1xi4_A 1303 LEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRV--NIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 1376 (1630)
T ss_pred HHHHhccChhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhc--ccchHhHHHHHHHHHHHHHHHHHhcccHHHHHH
Confidence 7665332 155556666665443 2222 45679999999999999999884
No 30
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.74 E-value=1e-15 Score=138.58 Aligned_cols=247 Identities=9% Similarity=0.028 Sum_probs=117.5
Q ss_pred ccCCHHHHHHHHHHHHhCCCCCCH--hhHHHHHHHHHccCCcchHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHH
Q 038190 99 GKKYYVNFICLSERLNTIGLLPDF--VSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEA 176 (531)
Q Consensus 99 ~~~~~~~a~~~~~~m~~~g~~~~~--~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 176 (531)
..|++..|+..++..... .|+. .....+.++|...|+++.|...++. . -+|+..++..+...+...|+.++|
T Consensus 11 ~~g~y~~ai~~~~~~~~~--~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~---~-~~~~~~a~~~la~~~~~~~~~~~A 84 (291)
T 3mkr_A 11 YIGSYQQCINEAQRVKPS--SPERDVERDVFLYRAYLAQRKYGVVLDEIKP---S-SAPELQAVRMFAEYLASHSRRDAI 84 (291)
T ss_dssp HTTCHHHHHHHHHHSCCC--SHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT---T-SCHHHHHHHHHHHHHHCSTTHHHH
T ss_pred HHHHHHHHHHHHHhcccC--CchhhHHHHHHHHHHHHHCCCHHHHHHHhcc---c-CChhHHHHHHHHHHHcCCCcHHHH
Confidence 345555555544443322 1221 2333344455555555554443322 1 123344444444555555555555
Q ss_pred HHHHHHHHHcCCCCCCCCcHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChhhhhcchHH
Q 038190 177 SGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSA 256 (531)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~ 256 (531)
++.++++...+..|+ +...+..+...+...|++++|++.+++ +.+...+..+...+.+.|++++|..
T Consensus 85 ~~~l~~ll~~~~~P~---~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~---- 151 (291)
T 3mkr_A 85 VAELDREMSRSVDVT---NTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARK---- 151 (291)
T ss_dssp HHHHHHHHHSCCCCS---CHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHH----
T ss_pred HHHHHHHHhcccCCC---CHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHH----
Confidence 555555544332232 334444444555555555555555544 2244444445555555555555554
Q ss_pred HHHHHHHHHhCCCCCCccccCCHhh---HHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 038190 257 ALELHEEFVNGNGELGVICHPDVLS---YCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDA 333 (531)
Q Consensus 257 a~~~~~~~~~~~~~~~~~~~~~~~~---~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a 333 (531)
.++.+.... |+... ....+..+...|++++|..+|+++.+. .+.+...++.+..++.+.|++++|
T Consensus 152 ---~l~~~~~~~--------p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~-~p~~~~~~~~la~~~~~~g~~~eA 219 (291)
T 3mkr_A 152 ---ELKKMQDQD--------EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK-CSPTLLLLNGQAACHMAQGRWEAA 219 (291)
T ss_dssp ---HHHHHHHHC--------TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH-SCCCHHHHHHHHHHHHHTTCHHHH
T ss_pred ---HHHHHHhhC--------cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHcCCHHHH
Confidence 333333322 22110 011222233445666666666666554 234555666666666666666666
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHH-HHHHHHHHHh
Q 038190 334 RKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEE-ALSLYGEMIS 377 (531)
Q Consensus 334 ~~~~~~~~~~g~~p~~~~~~~li~~~~~~~~~~~-a~~~~~~~~~ 377 (531)
...|+++.+..+. +..++..++..+...|+.++ +.++++++.+
T Consensus 220 ~~~l~~al~~~p~-~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~ 263 (291)
T 3mkr_A 220 EGVLQEALDKDSG-HPETLINLVVLSQHLGKPPEVTNRYLSQLKD 263 (291)
T ss_dssp HHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 6666666555332 45556666666666666544 3455555554
No 31
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.73 E-value=1.6e-17 Score=153.38 Aligned_cols=220 Identities=11% Similarity=0.013 Sum_probs=62.5
Q ss_pred ccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCcchHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHH
Q 038190 99 GKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASG 178 (531)
Q Consensus 99 ~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 178 (531)
+.|++++|.++++++ +++.+|..++.++.+.|++++|.+.|.+. +|..+|..++..+...|++++|+.
T Consensus 15 ~~~~ld~A~~fae~~------~~~~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~ 82 (449)
T 1b89_A 15 HIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVK 82 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhC------CChHHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHH
Confidence 445566666666665 23346666666666666666666666432 345566666666666666666666
Q ss_pred HHHHHHHcCCCCCCCCcHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChhhhhcchHHHH
Q 038190 179 LFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAAL 258 (531)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~a~ 258 (531)
.++..++. . +++.+.+.++.+|.+.|+++++.++++ .|+..+|..+...|...|++++|..
T Consensus 83 yl~~ark~--~----~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~------ 143 (449)
T 1b89_A 83 YLQMARKK--A----RESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKL------ 143 (449)
T ss_dssp --------------------------------CHHHHTTTTT-------CC----------------CTTTHHH------
T ss_pred HHHHHHHh--C----ccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHH------
Confidence 55555442 1 244556666666666666666665553 2455566666666666666666666
Q ss_pred HHHHHHHhCCCCCCccccCCHhhHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 038190 259 ELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFV 338 (531)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~ 338 (531)
.|..+ ..|..++.++.+.|++++|.+.++++ .++.+|..++.+|...|+++.|.....
T Consensus 144 -~Y~~a---------------~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l 201 (449)
T 1b89_A 144 -LYNNV---------------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGL 201 (449)
T ss_dssp -HHHHT---------------TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTT
T ss_pred -HHHHh---------------hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHH
Confidence 55432 24666666666666666666666655 155666666666666666666644333
Q ss_pred HHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 038190 339 SIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMI 376 (531)
Q Consensus 339 ~~~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 376 (531)
.+. ..+.....++..|.+.|.+++|..+++...
T Consensus 202 ~L~-----~~ad~l~~lv~~Yek~G~~eEai~lLe~aL 234 (449)
T 1b89_A 202 HIV-----VHADELEELINYYQDRGYFEELITMLEAAL 234 (449)
T ss_dssp TTT-----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHH-----hCHhhHHHHHHHHHHCCCHHHHHHHHHHHh
Confidence 211 233333445666666666666666666554
No 32
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.73 E-value=6.9e-18 Score=168.29 Aligned_cols=151 Identities=11% Similarity=0.143 Sum_probs=120.3
Q ss_pred CHhhHHHHHHHHhcCCCHHHHHHHHHHHHh---CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHH
Q 038190 278 DVLSYCSIINSLCKDVLVDKAKELFLDMKS---RGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNT 354 (531)
Q Consensus 278 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~ 354 (531)
-..||+++|++||+.|++++|.++|++|.+ .|+.||..|||+||.+|++.|++++|.++|++|.+.|+.||..||++
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYnt 205 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence 356899999999999999999999988764 47899999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCH-HHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHhh
Q 038190 355 LINSYSKIEKV-EEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLP 433 (531)
Q Consensus 355 li~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 433 (531)
+|.++++.|+. ++|.++|++|.+.|+.| |..+|++++.++.+. ..++..+++
T Consensus 206 LI~glcK~G~~~e~A~~Ll~EM~~kG~~P----------------------D~vtY~~ll~~~eR~----~vL~~Vrkv- 258 (1134)
T 3spa_A 206 ALQCMGRQDQDAGTIERCLEQMSQEGLKL----------------------QALFTAVLLSEEDRA----TVLKAVHKV- 258 (1134)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHTCCS----------------------HHHHHHSCCCHHHHH----HHHHHHGGG-
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCCCC----------------------ChhhcccccChhhHH----HHHHHHHHh-
Confidence 99999999874 78889999998888766 889999888765554 333444444
Q ss_pred hCCCCCc------HHHHHHHHHHHHHcC
Q 038190 434 RYGPEPN------VVTYTVMICGLCIEG 455 (531)
Q Consensus 434 ~~g~~p~------~~~~~~l~~~~~~~g 455 (531)
..++.|+ ..+...|.+.|.+.+
T Consensus 259 ~P~f~p~~~~~~~~~t~~LL~dl~s~d~ 286 (1134)
T 3spa_A 259 KPTFSLPPQLPPPVNTSKLLRDVYAKDG 286 (1134)
T ss_dssp CCCCCCCCCCCCCCCCCTTTHHHHCCCS
T ss_pred CcccCCCCCCcccccchHHHHHHHccCC
Confidence 2334443 445555666666655
No 33
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.72 E-value=1.3e-17 Score=166.40 Aligned_cols=133 Identities=10% Similarity=0.094 Sum_probs=112.1
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHH
Q 038190 348 DTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWE 427 (531)
Q Consensus 348 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 427 (531)
-..+|+++|.+|++.|++++|.++|++|.+.+ ..|+.||..+||+||.+||+.|++++|.+
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~-------------------~kG~~PdvvTYNtLI~Glck~G~~~eA~~ 186 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQR-------------------QKRKLLTLDMYNAVMLGWARQGAFKELVY 186 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSH-------------------HHHTTCCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh-------------------hcCCCCCHhHHHHHHHHHHhCCCHHHHHH
Confidence 45689999999999999999999999886531 22345699999999999999999999999
Q ss_pred HHHHhhhCCCCCcHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcc
Q 038190 428 LFKKLPRYGPEPNVVTYTVMICGLCIEGGI-EKAYDLLPDMEEKIRECLKAIELLHKMAKRYVKPDEITVSILEELLNKD 506 (531)
Q Consensus 428 ~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~i~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 506 (531)
+|++|.+.|+.||..||+++|.++++.|+. ++|.++|++|. +.|+.||..+|++++....+.
T Consensus 187 Lf~eM~~~G~~PDvvTYntLI~glcK~G~~~e~A~~Ll~EM~-----------------~kG~~PD~vtY~~ll~~~eR~ 249 (1134)
T 3spa_A 187 VLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMS-----------------QEGLKLQALFTAVLLSEEDRA 249 (1134)
T ss_dssp HHHHHHHTTCCCCHHHHHHHHHHHHHHTCCHHHHHHHHHHHH-----------------HHTCCSHHHHHHSCCCHHHHH
T ss_pred HHHHHHHcCCCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHHH-----------------HcCCCCChhhcccccChhhHH
Confidence 999999999999999999999999999974 66766665554 459999999999998877776
Q ss_pred CChhHHHhhH
Q 038190 507 ENCHECMNLL 516 (531)
Q Consensus 507 g~~~~a~~~~ 516 (531)
+-++.+.++.
T Consensus 250 ~vL~~Vrkv~ 259 (1134)
T 3spa_A 250 TVLKAVHKVK 259 (1134)
T ss_dssp HHHHHHGGGC
T ss_pred HHHHHHHHhC
Confidence 6555555443
No 34
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.72 E-value=1.4e-15 Score=137.69 Aligned_cols=271 Identities=10% Similarity=0.048 Sum_probs=208.8
Q ss_pred cCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCcchHHHH
Q 038190 65 EVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVA 144 (531)
Q Consensus 65 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~ 144 (531)
.|++..|+..++......|.........+.++|...|+++.|+..++. . -+|+..++..+...+...++.+.|...
T Consensus 12 ~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~---~-~~~~~~a~~~la~~~~~~~~~~~A~~~ 87 (291)
T 3mkr_A 12 IGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP---S-SAPELQAVRMFAEYLASHSRRDAIVAE 87 (291)
T ss_dssp TTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT---T-SCHHHHHHHHHHHHHHCSTTHHHHHHH
T ss_pred HHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc---c-CChhHHHHHHHHHHHcCCCcHHHHHHH
Confidence 468999999998875543332234667778999999999999987754 2 366778889999999999999999999
Q ss_pred HHHHHHCCCCC-ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCCCcHHhHHHHHHHHHhcCChhHHHHHHHHHh
Q 038190 145 LGRILRKVFSP-DVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMK 223 (531)
Q Consensus 145 ~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 223 (531)
++++...+..| +...+..+..++...|++++|++.+++ | .+..++..++..+.+.|++++|...|+++.
T Consensus 88 l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~-------~---~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~ 157 (291)
T 3mkr_A 88 LDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ-------G---DSLECMAMTVQILLKLDRLDLARKELKKMQ 157 (291)
T ss_dssp HHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT-------C---CSHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC-------C---CCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 99999876444 556777788999999999999999987 2 378899999999999999999999999998
Q ss_pred hCCCCCCHhhH---HHHHHHHHhcCChhhhhcchHHHHHHHHHHHhCCCCCCccccCCHhhHHHHHHHHhcCCCHHHHHH
Q 038190 224 GRGIYPDAFVY---NSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKE 300 (531)
Q Consensus 224 ~~g~~p~~~~~---~~li~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~ 300 (531)
+.. |+.... ..++..+...|++++|.. +|+++.... +.+...++.+..++.+.|++++|..
T Consensus 158 ~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~-------~~~~~l~~~-------p~~~~~~~~la~~~~~~g~~~eA~~ 221 (291)
T 3mkr_A 158 DQD--EDATLTQLATAWVSLAAGGEKLQDAYY-------IFQEMADKC-------SPTLLLLNGQAACHMAQGRWEAAEG 221 (291)
T ss_dssp HHC--TTCHHHHHHHHHHHHHHCTTHHHHHHH-------HHHHHHHHS-------CCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hhC--cCcHHHHHHHHHHHHHhCchHHHHHHH-------HHHHHHHhC-------CCcHHHHHHHHHHHHHcCCHHHHHH
Confidence 763 443211 122333444466676666 887777764 4678899999999999999999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH-HHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 038190 301 LFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDD-ARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSL 371 (531)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~-a~~~~~~~~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~ 371 (531)
.|++..+.. +-+..++..++..+...|+.++ +.++++++.+.. |+... +.....+.+.++++..-
T Consensus 222 ~l~~al~~~-p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~--P~~~~---~~d~~~~~~~fd~~~~~ 287 (291)
T 3mkr_A 222 VLQEALDKD-SGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAH--RSHPF---IKEYRAKENDFDRLVLQ 287 (291)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC--TTCHH---HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC--CCChH---HHHHHHHHHHHHHHHHH
Confidence 999988864 3478889999999999999875 678999998874 33322 23344555555555443
No 35
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.71 E-value=1.4e-14 Score=141.70 Aligned_cols=312 Identities=11% Similarity=-0.085 Sum_probs=214.9
Q ss_pred CChhhHHHHHHHHHccCCHHHHHHHHHHHHhC-----C---CCCCHhhHHHHHHHHHccCCcchHHHHHHHHHHCC----
Q 038190 85 PFMPSFNSLLGALAGKKYYVNFICLSERLNTI-----G---LLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKV---- 152 (531)
Q Consensus 85 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-----g---~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~---- 152 (531)
.....||.|...+...|++++|++.|++..+. + -+....+|..+..+|...|++++|...++++.+..
T Consensus 49 ~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~ 128 (472)
T 4g1t_A 49 FKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFS 128 (472)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC
T ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcc
Confidence 34568999999999999999999999987542 1 12235688999999999999999999999887531
Q ss_pred -C-C-CChhhHHHHHHHHHhc--CChHHHHHHHHHHHHcCCCCCCCCcHHhHHHHHHH---HHhcCChhHHHHHHHHHhh
Q 038190 153 -F-S-PDVVTLGCLIRGLCMQ--GKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDG---LCKDGFVNKVRVLFLDMKG 224 (531)
Q Consensus 153 -~-~-~~~~~~~~li~~~~~~--g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~~~~~~a~~~~~~m~~ 224 (531)
. . ....++..+..++... +++++|+..|++.... .|+ +...+..+..+ +...++.++|++.|++..+
T Consensus 129 ~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~--~p~---~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~ 203 (472)
T 4g1t_A 129 SPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEK--KPK---NPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIR 203 (472)
T ss_dssp CSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--STT---CHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHH
T ss_pred cccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHh--CCC---CHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhh
Confidence 1 1 1234666666566554 4689999999999886 443 55666655555 3456788899999988876
Q ss_pred CCCCCCHhhHHHHHHHHHhcCChhhhhcchHHHHHHHHHHHhCCCCCCccccCCHhhHHHHHHHHhcCCCHHHHHHHHHH
Q 038190 225 RGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLD 304 (531)
Q Consensus 225 ~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 304 (531)
... .+...+..+...+...+... +.+++|.+.++...... +.+..++..+...|...|++++|...+++
T Consensus 204 l~p-~~~~~~~~l~~~~~~~~~~~---~~~~~a~~~~~~al~~~-------~~~~~~~~~lg~~~~~~~~~~~A~~~~~~ 272 (472)
T 4g1t_A 204 LNP-DNQYLKVLLALKLHKMREEG---EEEGEGEKLVEEALEKA-------PGVTDVLRSAAKFYRRKDEPDKAIELLKK 272 (472)
T ss_dssp HCS-SCHHHHHHHHHHHHHCC---------CHHHHHHHHHHHHC-------SSCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred cCC-cchHHHHHHHHHHHHHHhhh---hHHHHHHHHHHHHHHhC-------ccHHHHHHHHHHHHHHcCchHHHHHHHHH
Confidence 532 24555655555555443321 22334444777666654 45677888999999999999999999999
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhc-------------------CCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCH
Q 038190 305 MKSRGIIPDVVVYSSLIDGYCLM-------------------GRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKV 365 (531)
Q Consensus 305 ~~~~~~~~~~~~~~~ll~~~~~~-------------------g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~~~~ 365 (531)
..+.. +-+..++..+...|... +.++.|...+++..+.... +...+..+...|...|++
T Consensus 273 al~~~-p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~lg~~~~~~~~~ 350 (472)
T 4g1t_A 273 ALEYI-PNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDN-LFRVCSILASLHALADQY 350 (472)
T ss_dssp HHHHS-TTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCTT-TCCCHHHHHHHHHHTTCH
T ss_pred HHHhC-CChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCc-hhhhhhhHHHHHHHhccH
Confidence 98763 23566666666555332 2356788888887776543 566788899999999999
Q ss_pred HHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHhCCCCCCHHHHHHHHH-HHHcCCChHHHHHHHHHhhh
Q 038190 366 EEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVD-GLCKSWRLRSAWELFKKLPR 434 (531)
Q Consensus 366 ~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~g~~~~A~~~~~~~~~ 434 (531)
++|...|++..+....+. . ....+..+.. .+...|++++|+..|++..+
T Consensus 351 ~~A~~~~~kaL~~~~~~~-----~---------------~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~ 400 (472)
T 4g1t_A 351 EEAEYYFQKEFSKELTPV-----A---------------KQLLHLRYGNFQLYQMKCEDKAIHHFIEGVK 400 (472)
T ss_dssp HHHHHHHHHHHHSCCCHH-----H---------------HHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCh-----H---------------HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 999999999887543221 0 0012222222 23467888888888887776
No 36
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.67 E-value=8.5e-13 Score=136.40 Aligned_cols=336 Identities=13% Similarity=0.067 Sum_probs=225.3
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHhCCC--CCCHhhHHHHHHHHHccCCcchHHHHHHHHHHCCCCCChhhHHHHHHH
Q 038190 89 SFNSLLGALAGKKYYVNFICLSERLNTIGL--LPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRG 166 (531)
Q Consensus 89 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 166 (531)
--...+++|...|.+.+|++++++..-.+- .-+....+.++.+..+. +..+..++.+...+. ....+...
T Consensus 987 eVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~-------d~~eIA~I 1058 (1630)
T 1xi4_A 987 EVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNY-------DAPDIANI 1058 (1630)
T ss_pred HhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhc-------cHHHHHHH
Confidence 345566777788888888888888773321 12334555566666655 445555555544321 13346677
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCCCCCcHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCC
Q 038190 167 LCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVN 246 (531)
Q Consensus 167 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~ 246 (531)
+...|.+++|..+|++... .....+.++. ..+++++|.++.++.. +..+|..+..++...|+
T Consensus 1059 ai~lglyEEAf~IYkKa~~---------~~~A~~VLie---~i~nldrAiE~Aervn------~p~vWsqLAKAql~~G~ 1120 (1630)
T 1xi4_A 1059 AISNELFEEAFAIFRKFDV---------NTSAVQVLIE---HIGNLDRAYEFAERCN------EPAVWSQLAKAQLQKGM 1120 (1630)
T ss_pred HHhCCCHHHHHHHHHHcCC---------HHHHHHHHHH---HHhhHHHHHHHHHhcC------CHHHHHHHHHHHHhCCC
Confidence 7778888888888887531 2223333332 6677888888877552 46677788888888888
Q ss_pred hhhhhcchHHHHHHHHHHHhCCCCCCccccCCHhhHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 038190 247 WEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCL 326 (531)
Q Consensus 247 ~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 326 (531)
+++|.. .|... -|...|..++.+|.+.|++++|.++|....+.. ++....+.++.+|++
T Consensus 1121 ~kEAId-------sYiKA------------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAK 1179 (1630)
T 1xi4_A 1121 VKEAID-------SYIKA------------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAK 1179 (1630)
T ss_pred HHHHHH-------HHHhc------------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHh
Confidence 877777 44321 245667778888888888888888887766653 333334457778888
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHhCCCCCCH
Q 038190 327 MGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDL 406 (531)
Q Consensus 327 ~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 406 (531)
.+++++...+ .+ .++...|..+...|...|++++|..+|...
T Consensus 1180 l~rleele~f----I~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA------------------------------- 1221 (1630)
T 1xi4_A 1180 TNRLAELEEF----IN---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV------------------------------- 1221 (1630)
T ss_pred hcCHHHHHHH----Hh---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh-------------------------------
Confidence 8877754333 22 245666777888888888888888888663
Q ss_pred HHHHHHHHHHHcCCChHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-------------Hhh
Q 038190 407 TVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK-------------IRE 473 (531)
Q Consensus 407 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------------i~~ 473 (531)
..|..++.+|++.|++++|.+.+++.. +..+|..+..+|...|++..|......+... .|.
T Consensus 1222 ~ny~rLA~tLvkLge~q~AIEaarKA~------n~~aWkev~~acve~~Ef~LA~~cgl~Iiv~~deLeeli~yYe~~G~ 1295 (1630)
T 1xi4_A 1222 SNFGRLASTLVHLGEYQAAVDGARKAN------STRTWKEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGY 1295 (1630)
T ss_pred hHHHHHHHHHHHhCCHHHHHHHHHHhC------CHHHHHHHHHHHhhhhHHHHHHHHHHhhhcCHHHHHHHHHHHHHcCC
Confidence 278999999999999999999999874 6689999999999999999887766433111 388
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcc--CChhHHHhhH
Q 038190 474 CLKAIELLHKMAKRYVKPDEITVSILEELLNKD--ENCHECMNLL 516 (531)
Q Consensus 474 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--g~~~~a~~~~ 516 (531)
+++|+.+++..+... +-....|.-+..+|.+. ++..++.+++
T Consensus 1296 feEAI~LlE~aL~Le-raH~gmftELaiLyaKy~peklmEhlk~f 1339 (1630)
T 1xi4_A 1296 FEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELF 1339 (1630)
T ss_pred HHHHHHHHHHHhccC-hhHhHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 999999998887433 22234566666666654 3344444433
No 37
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.66 E-value=3.1e-14 Score=123.04 Aligned_cols=200 Identities=13% Similarity=-0.049 Sum_probs=158.8
Q ss_pred cCCHhhHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHH
Q 038190 276 HPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTL 355 (531)
Q Consensus 276 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~l 355 (531)
+++...+..+...+.+.|++++|...|++..+.. +.+...+..+...+.+.|++++|...|++..+..+. +...+..+
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~l 79 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVARTPR-YLGGYMVL 79 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHH
Confidence 4566788889999999999999999999998874 346888999999999999999999999999987644 67788899
Q ss_pred HHHHHhc-----------CCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHH
Q 038190 356 INSYSKI-----------EKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRS 424 (531)
Q Consensus 356 i~~~~~~-----------~~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 424 (531)
...|... |++++|+..|++..+. .|+ +...+..+..+|...|++++
T Consensus 80 g~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~P~---------------------~~~~~~~lg~~~~~~g~~~~ 136 (217)
T 2pl2_A 80 SEAYVALYRQAEDRERGKGYLEQALSVLKDAERV--NPR---------------------YAPLHLQRGLVYALLGERDK 136 (217)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHH--CTT---------------------CHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHh--Ccc---------------------cHHHHHHHHHHHHHcCChHH
Confidence 9999999 9999999999988774 333 78899999999999999999
Q ss_pred HHHHHHHhhhCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHh
Q 038190 425 AWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECLKAIELLHKMAKRYVKPDEITVSILEELLN 504 (531)
Q Consensus 425 A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~i~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 504 (531)
|...|++..+.. .++..+..+..+|...|++++|+..|++..+. . +.+...+..+..++.
T Consensus 137 A~~~~~~al~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-----------------~-P~~~~~~~~la~~~~ 196 (217)
T 2pl2_A 137 AEASLKQALALE--DTPEIRSALAELYLSMGRLDEALAQYAKALEQ-----------------A-PKDLDLRVRYASALL 196 (217)
T ss_dssp HHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----------------S-TTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHhcc--cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----------------C-CCChHHHHHHHHHHH
Confidence 999999999876 68889999999999999999998888765543 2 335678889999999
Q ss_pred ccCChhHHHhhHHHhh
Q 038190 505 KDENCHECMNLLPSFL 520 (531)
Q Consensus 505 ~~g~~~~a~~~~~~~~ 520 (531)
+.|++++|.+.+++..
T Consensus 197 ~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 197 LKGKAEEAARAAALEH 212 (217)
T ss_dssp C---------------
T ss_pred HccCHHHHHHHHHHHh
Confidence 9999999999998764
No 38
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.64 E-value=5.9e-14 Score=135.58 Aligned_cols=336 Identities=11% Similarity=-0.039 Sum_probs=180.9
Q ss_pred cCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCCH---HHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccC-----
Q 038190 65 EVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYY---VNFICLSERLNTIGLLPDFVSLNILMNCFCKMI----- 136 (531)
Q Consensus 65 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~---~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g----- 136 (531)
.|++++|.++|+...+.| +..++..|...|...|+. ++|+..|++..+. ++..+..+...+...+
T Consensus 16 ~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~~~~~~~~~ 88 (452)
T 3e4b_A 16 RGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLAAKPGATEA 88 (452)
T ss_dssp HHHHHHHHHHHHHHHHHT---CCTGGGTCC--------------------------------CHHHHHHHHHTC--CCHH
T ss_pred CCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHHhCCCCCCc
Confidence 347777777777776654 334455555556666666 7777777777643 4555666666444443
Q ss_pred CcchHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHH---HHHHHHHHHHcCCCCCCCCcHHhHHHHHHHHHhcCChh
Q 038190 137 GVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTE---ASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVN 213 (531)
Q Consensus 137 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~---a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 213 (531)
++++|..+|++..+.|. ...+..|...|...+..+. +.+.+......| +...+..|...|...+.++
T Consensus 89 ~~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g-------~~~a~~~Lg~~y~~~~~~~ 158 (452)
T 3e4b_A 89 EHHEAESLLKKAFANGE---GNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG-------YPEAGLAQVLLYRTQGTYD 158 (452)
T ss_dssp HHHHHHHHHHHHHHTTC---SSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT-------CTTHHHHHHHHHHHHTCGG
T ss_pred CHHHHHHHHHHHHHCCC---HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC-------CHHHHHHHHHHHHcCCCcc
Confidence 56677777777777652 2366667777766665433 333444433322 3445666677777766555
Q ss_pred HHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcC---ChhhhhcchHHHHHHHHHHHhCCCCCCccccCCHhhHHHHHHHHh
Q 038190 214 KVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAV---NWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLC 290 (531)
Q Consensus 214 ~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~---~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~ 290 (531)
++......+...-...+...+..+...|...| +.++|.. .|+.....+ .++...+..+...|.
T Consensus 159 ~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~-------~~~~aa~~g-------~~~a~~~~~Lg~~y~ 224 (452)
T 3e4b_A 159 QHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLK-------QMEAGVSRG-------TVTAQRVDSVARVLG 224 (452)
T ss_dssp GGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHH-------HHHHHHHTT-------CSCHHHHHHHHHHHT
T ss_pred cCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHH-------HHHHHHHCC-------CHHHHHHHHHHHHHh
Confidence 44444333222111113335666666666655 3333333 777777766 344444455666665
Q ss_pred cC----CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH-H--HhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC
Q 038190 291 KD----VLVDKAKELFLDMKSRGIIPDVVVYSSLIDG-Y--CLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIE 363 (531)
Q Consensus 291 ~~----~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~-~--~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~~ 363 (531)
.. +++++|..+|++.. .| +...+..|... | ...+++++|...|++..+.| +...+..|...|. .|
T Consensus 225 ~g~~~~~d~~~A~~~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G 296 (452)
T 3e4b_A 225 DATLGTPDEKTAQALLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EG 296 (452)
T ss_dssp CGGGSSCCHHHHHHHHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HC
T ss_pred CCCCCCCCHHHHHHHHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cC
Confidence 44 57777777777766 32 44455555554 3 34677777777777777665 5556666666665 34
Q ss_pred -----CHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc----CCChHHHHHHHHHhhh
Q 038190 364 -----KVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCK----SWRLRSAWELFKKLPR 434 (531)
Q Consensus 364 -----~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~ 434 (531)
++++|+.+|++.. .| ++..+..|...|.. ..++++|..+|++..+
T Consensus 297 ~g~~~d~~~A~~~~~~Aa-~g-------------------------~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~ 350 (452)
T 3e4b_A 297 KWVPADAKAAEAHFEKAV-GR-------------------------EVAADYYLGQIYRRGYLGKVYPQKALDHLLTAAR 350 (452)
T ss_dssp SSSCCCHHHHHHHHHTTT-TT-------------------------CHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHh-CC-------------------------CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHh
Confidence 6666666666554 22 66777777777766 3478888888888877
Q ss_pred CCCCCcHHHHHHHHHHHHH----cCCHHHHHHHHHHHH
Q 038190 435 YGPEPNVVTYTVMICGLCI----EGGIEKAYDLLPDME 468 (531)
Q Consensus 435 ~g~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~ 468 (531)
.| +......|...|.. ..++.+|...|+...
T Consensus 351 ~g---~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~ 385 (452)
T 3e4b_A 351 NG---QNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAK 385 (452)
T ss_dssp TT---CTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHH
T ss_pred hC---hHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHH
Confidence 55 33444555555543 345666655555443
No 39
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.62 E-value=3.5e-14 Score=122.73 Aligned_cols=200 Identities=12% Similarity=-0.054 Sum_probs=155.6
Q ss_pred CChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCcchHHHHHHHHHHCCCCCChhhHHHHH
Q 038190 85 PFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLI 164 (531)
Q Consensus 85 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li 164 (531)
++...|..+...+.+.|++++|+..|++..+.. +.+...+..+..++.+.|++++|...++++++..+. +...+..+.
T Consensus 3 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg 80 (217)
T 2pl2_A 3 TAEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVARTPR-YLGGYMVLS 80 (217)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHH
Confidence 366788888889999999999999999998875 557788899999999999999999999999987643 677888899
Q ss_pred HHHHhc-----------CChHHHHHHHHHHHHcCCCCCCCCcHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHhh
Q 038190 165 RGLCMQ-----------GKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFV 233 (531)
Q Consensus 165 ~~~~~~-----------g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~ 233 (531)
.++... |++++|+..|++.... .|+ +..+|..+..++...|++++|+..|++..+.. .+...
T Consensus 81 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~P~---~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~ 153 (217)
T 2pl2_A 81 EAYVALYRQAEDRERGKGYLEQALSVLKDAERV--NPR---YAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEI 153 (217)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHH--CTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHH
T ss_pred HHHHHhhhhhhhhcccccCHHHHHHHHHHHHHh--Ccc---cHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHH
Confidence 999999 9999999999999886 453 67889999999999999999999999998876 57888
Q ss_pred HHHHHHHHHhcCChhhhhcchHHHHHHHHHHHhCCCCCCccccCCHhhHHHHHHHHhcCCCHHHHHHHHHHHHh
Q 038190 234 YNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKS 307 (531)
Q Consensus 234 ~~~li~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 307 (531)
+..+..++...|++++|.. .|+...... +.+...+..+...+...|++++|...|++...
T Consensus 154 ~~~la~~~~~~g~~~~A~~-------~~~~al~~~-------P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 213 (217)
T 2pl2_A 154 RSALAELYLSMGRLDEALA-------QYAKALEQA-------PKDLDLRVRYASALLLKGKAEEAARAAALEHH 213 (217)
T ss_dssp HHHHHHHHHHHTCHHHHHH-------HHHHHHHHS-------TTCHHHHHHHHHHHTC----------------
T ss_pred HHHHHHHHHHcCCHHHHHH-------HHHHHHHhC-------CCChHHHHHHHHHHHHccCHHHHHHHHHHHhh
Confidence 8889999999999999888 555555443 34677888889999999999999998887643
No 40
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.62 E-value=8.8e-14 Score=134.36 Aligned_cols=141 Identities=16% Similarity=-0.001 Sum_probs=64.8
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc----CCHHHHHHHHHHHHhcCCCCCHHHHHHHHHH-H--HhcCCHH
Q 038190 294 LVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLM----GRIDDARKLFVSIESEGCIPDTSSYNTLINS-Y--SKIEKVE 366 (531)
Q Consensus 294 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~----g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~-~--~~~~~~~ 366 (531)
+.++|...|+...+.|. ++...+..+...|... +++++|...|++.. .| +...+..+... | ...++++
T Consensus 194 ~~~~A~~~~~~aa~~g~-~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~ 268 (452)
T 3e4b_A 194 QQAELLKQMEAGVSRGT-VTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA-PG---YPASWVSLAQLLYDFPELGDVE 268 (452)
T ss_dssp HHHHHHHHHHHHHHTTC-SCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-GG---STHHHHHHHHHHHHSGGGCCHH
T ss_pred cHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHH
Confidence 45555555555555442 2333333344444332 45555555555554 22 33333344333 2 2345555
Q ss_pred HHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCC-----ChHHHHHHHHHhhhCCCCCcH
Q 038190 367 EALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSW-----RLRSAWELFKKLPRYGPEPNV 441 (531)
Q Consensus 367 ~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-----~~~~A~~~~~~~~~~g~~p~~ 441 (531)
+|+.+|++..+.| +...+..|...|. .| ++++|..+|++.. .| ++
T Consensus 269 ~A~~~~~~Aa~~g-------------------------~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-~g---~~ 318 (452)
T 3e4b_A 269 QMMKYLDNGRAAD-------------------------QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-GR---EV 318 (452)
T ss_dssp HHHHHHHHHHHTT-------------------------CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-TT---CH
T ss_pred HHHHHHHHHHHCC-------------------------CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-CC---CH
Confidence 5555555555433 3444444554444 22 5555555555554 21 33
Q ss_pred HHHHHHHHHHHH----cCCHHHHHHHHHHHHH
Q 038190 442 VTYTVMICGLCI----EGGIEKAYDLLPDMEE 469 (531)
Q Consensus 442 ~~~~~l~~~~~~----~g~~~~A~~~~~~~~~ 469 (531)
..+..|...|.. ..++++|++.|++..+
T Consensus 319 ~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~ 350 (452)
T 3e4b_A 319 AADYYLGQIYRRGYLGKVYPQKALDHLLTAAR 350 (452)
T ss_dssp HHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHh
Confidence 444444444433 2255555555555443
No 41
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.62 E-value=1.8e-13 Score=128.00 Aligned_cols=254 Identities=8% Similarity=-0.009 Sum_probs=203.3
Q ss_pred hhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCC-cchHHHHHHHHHHCCCCCChhhHHHHHH
Q 038190 87 MPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIG-VSDAFVALGRILRKVFSPDVVTLGCLIR 165 (531)
Q Consensus 87 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~-~~~a~~~~~~~~~~~~~~~~~~~~~li~ 165 (531)
..+|+.+...+...|++++|+..++++++.. +-+..+|+.+..++...|+ +++|+..|+++++..+. +..+|..+..
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~-~~~a~~~~g~ 174 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK-NYQVWHHRRV 174 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCC-CHHHHHHHHH
Confidence 4578888889999999999999999999875 5567889999999999996 99999999999998644 7889999999
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCCCCCcHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHh-c
Q 038190 166 GLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCC-A 244 (531)
Q Consensus 166 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~-~ 244 (531)
++...|++++|+..|++++.. .|+ +..+|..+..++...|++++|+..|+++.+.... +...|+.+..++.. .
T Consensus 175 ~~~~~g~~~eAl~~~~kal~l--dP~---~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~-~~~a~~~lg~~l~~l~ 248 (382)
T 2h6f_A 175 LVEWLRDPSQELEFIADILNQ--DAK---NYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR-NNSVWNQRYFVISNTT 248 (382)
T ss_dssp HHHHHTCCTTHHHHHHHHHHH--CTT---CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTT
T ss_pred HHHHccCHHHHHHHHHHHHHh--Ccc---CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhc
Confidence 999999999999999999987 553 7889999999999999999999999999986443 67888888888888 5
Q ss_pred CChhhhhcchHHHHHHHHHHHhCCCCCCccccCCHhhHHHHHHHHhcCC--CHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 038190 245 VNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDV--LVDKAKELFLDMKSRGIIPDVVVYSSLID 322 (531)
Q Consensus 245 ~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 322 (531)
|..++|. .+.+++.++...... +-+...|..+...+...| ++++|.+.+..+ +. .+.+...+..+..
T Consensus 249 ~~~~eA~--~~~el~~~~~Al~l~-------P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~-~p~~~~al~~La~ 317 (382)
T 2h6f_A 249 GYNDRAV--LEREVQYTLEMIKLV-------PHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QP-SHSSPYLIAFLVD 317 (382)
T ss_dssp CSCSHHH--HHHHHHHHHHHHHHS-------TTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TT-TCCCHHHHHHHHH
T ss_pred CcchHHH--HHHHHHHHHHHHHHC-------CCCHHHHHHHHHHHHccCccchHHHHHHHHHh-cc-CCCCHHHHHHHHH
Confidence 5546663 222334666666544 346778888888898888 689999999888 33 3446788889999
Q ss_pred HHHhcC---------CHHHHHHHHHHH-HhcCCCCCHHHHHHHHHHHH
Q 038190 323 GYCLMG---------RIDDARKLFVSI-ESEGCIPDTSSYNTLINSYS 360 (531)
Q Consensus 323 ~~~~~g---------~~~~a~~~~~~~-~~~g~~p~~~~~~~li~~~~ 360 (531)
+|.+.| ..++|.++|+++ .+.... ....|..+...+.
T Consensus 318 ~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~~DP~-r~~~w~~~~~~l~ 364 (382)
T 2h6f_A 318 IYEDMLENQCDNKEDILNKALELCEILAKEKDTI-RKEYWRYIGRSLQ 364 (382)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHHHHHTTCGG-GHHHHHHHHHHHH
T ss_pred HHHHHhcccccchHHHHHHHHHHHHHHHHHhCch-hHHHHHHHHHHHH
Confidence 998874 358999999998 665321 3445555555443
No 42
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.62 E-value=2.9e-13 Score=120.48 Aligned_cols=231 Identities=14% Similarity=-0.004 Sum_probs=175.0
Q ss_pred HHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChhhhhcchHHHHHHHHHHHhCCCCCCccc
Q 038190 196 VICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVIC 275 (531)
Q Consensus 196 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~ 275 (531)
...|..+...+...|++++|...|++..+.. .+...+..+...+...|++++|...+.+++++...... . .
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~-~------~ 75 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRA-D------Y 75 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC-C------H
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCccccc-c------h
Confidence 3456666667777777777777777766654 45666667777777777777777644444443221100 0 0
Q ss_pred cCCHhhHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHH
Q 038190 276 HPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTL 355 (531)
Q Consensus 276 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~l 355 (531)
.....++..+...+...|++++|...|+++.+. .|+. ..+...|++++|...++.+...... +...+..+
T Consensus 76 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~-------~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~ 145 (258)
T 3uq3_A 76 KVISKSFARIGNAYHKLGDLKKTIEYYQKSLTE--HRTA-------DILTKLRNAEKELKKAEAEAYVNPE-KAEEARLE 145 (258)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCH-------HHHHHHHHHHHHHHHHHHHHHCCHH-HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhc--Cchh-------HHHHHHhHHHHHHHHHHHHHHcCcc-hHHHHHHH
Confidence 011567888999999999999999999999885 3443 3466778999999999999886432 56678888
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHhhhC
Q 038190 356 INSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRY 435 (531)
Q Consensus 356 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 435 (531)
...+...|++++|...|++..+.. | .+..++..+..+|...|++++|...|+++.+.
T Consensus 146 ~~~~~~~~~~~~A~~~~~~a~~~~--~---------------------~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 202 (258)
T 3uq3_A 146 GKEYFTKSDWPNAVKAYTEMIKRA--P---------------------EDARGYSNRAAALAKLMSFPEAIADCNKAIEK 202 (258)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC--T---------------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHhcC--c---------------------ccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 999999999999999999988743 2 26789999999999999999999999999885
Q ss_pred CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 038190 436 GPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEE 469 (531)
Q Consensus 436 g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 469 (531)
. +.+...|..+..++...|++++|++.|++..+
T Consensus 203 ~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 235 (258)
T 3uq3_A 203 D-PNFVRAYIRKATAQIAVKEYASALETLDAART 235 (258)
T ss_dssp C-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred C-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 3 33578899999999999999999998876554
No 43
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.61 E-value=1.1e-13 Score=123.30 Aligned_cols=226 Identities=12% Similarity=-0.017 Sum_probs=149.8
Q ss_pred hhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCcchHHHHHHHHHHCCCCC--C----hhhH
Q 038190 87 MPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSP--D----VVTL 160 (531)
Q Consensus 87 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~--~----~~~~ 160 (531)
...|..+...+...|++++|+..|+++.+.. .+..++..+..++...|++++|...++++.+..... + ..++
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 82 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSF 82 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHH
Confidence 3466777777778888888888888887766 667777777788888888888888887777653221 1 4677
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCCCcHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHhhHHHHHHH
Q 038190 161 GCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRV 240 (531)
Q Consensus 161 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~ 240 (531)
..+..++...|++++|+..|++.... .| +. ..+...|++++|...++.+.... +.+...+..+...
T Consensus 83 ~~l~~~~~~~~~~~~A~~~~~~a~~~--~~----~~-------~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~ 148 (258)
T 3uq3_A 83 ARIGNAYHKLGDLKKTIEYYQKSLTE--HR----TA-------DILTKLRNAEKELKKAEAEAYVN-PEKAEEARLEGKE 148 (258)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--CC----CH-------HHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhc--Cc----hh-------HHHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHHHHH
Confidence 77777777888888888888777764 22 21 23455566777777777776642 1134455666666
Q ss_pred HHhcCChhhhhcchHHHHHHHHHHHhCCCCCCccccCCHhhHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 038190 241 YCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSL 320 (531)
Q Consensus 241 ~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 320 (531)
+...|++++|.. .++...... +.+..++..+..++...|++++|...++...+.. +.+...+..+
T Consensus 149 ~~~~~~~~~A~~-------~~~~a~~~~-------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l 213 (258)
T 3uq3_A 149 YFTKSDWPNAVK-------AYTEMIKRA-------PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRK 213 (258)
T ss_dssp HHHTTCHHHHHH-------HHHHHHHHC-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred HHHhcCHHHHHH-------HHHHHHhcC-------cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHHH
Confidence 666666666666 444444432 2345666667777777777777777777766653 2245666666
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhc
Q 038190 321 IDGYCLMGRIDDARKLFVSIESE 343 (531)
Q Consensus 321 l~~~~~~g~~~~a~~~~~~~~~~ 343 (531)
...|...|++++|...|++..+.
T Consensus 214 ~~~~~~~g~~~~A~~~~~~a~~~ 236 (258)
T 3uq3_A 214 ATAQIAVKEYASALETLDAARTK 236 (258)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHh
Confidence 67777777777777777766554
No 44
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.60 E-value=2.9e-11 Score=120.71 Aligned_cols=444 Identities=12% Similarity=0.027 Sum_probs=287.8
Q ss_pred HHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCC---cchHHHH
Q 038190 68 LNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIG---VSDAFVA 144 (531)
Q Consensus 68 ~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~---~~~a~~~ 144 (531)
..+.+..|++.+..+|. |..+|..++..+.+.+.++.+..+|+++... ++.....|...+..-.+.++ ++.+..+
T Consensus 48 ~~d~i~~lE~~l~~np~-d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~l 125 (679)
T 4e6h_A 48 ESDVIGKLNDMIEEQPT-DIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELDAAVIEPV 125 (679)
T ss_dssp CSCHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCCHHHHHHH
T ss_pred CHHHHHHHHHHHHHCcC-CHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcchHHHHHHH
Confidence 45566677888887776 9999999999999999999999999999887 36677889999988888888 9999999
Q ss_pred HHHHHHCCC-CCChhhHHHHHHHHHhcCCh--------HHHHHHHHHHHHc-CC-CCCCCCcHHhHHHHHHHHHh-----
Q 038190 145 LGRILRKVF-SPDVVTLGCLIRGLCMQGKF--------TEASGLFTKFVAF-DC-RPNVIPNVICYASIIDGLCK----- 208 (531)
Q Consensus 145 ~~~~~~~~~-~~~~~~~~~li~~~~~~g~~--------~~a~~~~~~~~~~-~~-~~~~~~~~~~~~~l~~~~~~----- 208 (531)
|++.+...+ +|++..|...+....+.++. +.+.++|+..... |. .+ .+...|...+.....
T Consensus 126 feRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~---~s~~iW~~Yi~f~~~~~~~~ 202 (679)
T 4e6h_A 126 LARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEP---KSIQFWNEYLHFLEHWKPVN 202 (679)
T ss_dssp HHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCS---SCHHHHHHHHHHHHTCCCCS
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccc---cchHHHHHHHHHHHhccccC
Confidence 999998742 37888999888766665553 3345788876653 44 44 245688888876543
Q ss_pred ----cCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCC------hhhhhcchHHHHHHHHHHHhCCCCCCcc----
Q 038190 209 ----DGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVN------WEDAKGNTSAALELHEEFVNGNGELGVI---- 274 (531)
Q Consensus 209 ----~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~------~~~a~~~~~~a~~~~~~~~~~~~~~~~~---- 274 (531)
.++++.+..+|+.........-..+|......-...+. ..+....|..|...+..+..........
T Consensus 203 ~~eeq~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~ 282 (679)
T 4e6h_A 203 KFEEQQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPIT 282 (679)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSS
T ss_pred cHHHHhHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccc
Confidence 34577899999998864222122333322211111111 1111123444455555443222111000
Q ss_pred --------ccC-C------HhhHHHHHHHHhcCC-------CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 038190 275 --------CHP-D------VLSYCSIINSLCKDV-------LVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDD 332 (531)
Q Consensus 275 --------~~~-~------~~~~~~ll~~~~~~~-------~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~ 332 (531)
+++ + ...|...+.---..+ ..+.+..+|++.... .+-+...|...+..+...|+.++
T Consensus 283 ~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~~~ 361 (679)
T 4e6h_A 283 LNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH-VCFAPEIWFNMANYQGEKNTDST 361 (679)
T ss_dssp STTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHSCCTT
T ss_pred cccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHhcCcHHH
Confidence 010 1 134555554333332 134456778887765 34477888888888888899999
Q ss_pred HH-HHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC---------CCCcccHHHHHHHHHHHHhCCC
Q 038190 333 AR-KLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGV---------RPDNSCILEAAELFRTLHNTKF 402 (531)
Q Consensus 333 a~-~~~~~~~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~---------~~~~~~~~~a~~~~~~~~~~~~ 402 (531)
|. .+|++..... +.+...|-..+....+.|+++.|.++|+.+..... .|+.. .. .+.+..
T Consensus 362 a~r~il~rAi~~~-P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~---~~---~~~~~~--- 431 (679)
T 4e6h_A 362 VITKYLKLGQQCI-PNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNE---SA---INQLKS--- 431 (679)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCH---HH---HHHHHH---
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcch---hh---hhhhcc---
Confidence 96 9999998753 23566677888888999999999999999876310 01000 00 000000
Q ss_pred CCCHHHHHHHHHHHHcCCChHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHH-----------
Q 038190 403 ELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIE-GGIEKAYDLLPDMEEK----------- 470 (531)
Q Consensus 403 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~----------- 470 (531)
-...+|...+....+.|+.+.|..+|.++.+.-.......|...+..-.+. ++.+.|.++|+...+.
T Consensus 432 -~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y 510 (679)
T 4e6h_A 432 -KLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKY 510 (679)
T ss_dssp -HHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred -chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHH
Confidence 023467777777778888888888888887640011233333333223333 4478888888887776
Q ss_pred ------HhhHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHhccCChhHHHhhHHHhhhcchhhhh
Q 038190 471 ------IRECLKAIELLHKMAKRYVKP--DEITVSILEELLNKDENCHECMNLLPSFLSRNQEESK 528 (531)
Q Consensus 471 ------i~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 528 (531)
+++.+.|+.+|+..+.....+ ....|..+++.-.+.|+.+.+..+.+++....+..++
T Consensus 511 ~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~~~~ 576 (679)
T 4e6h_A 511 LDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPEVNK 576 (679)
T ss_dssp HHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTTCCH
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcH
Confidence 277888888998888654322 3467888888888999999999999999887766543
No 45
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.59 E-value=4.5e-13 Score=120.43 Aligned_cols=245 Identities=11% Similarity=0.004 Sum_probs=161.6
Q ss_pred hhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCcchHHHHHHHHHHCCCCCC--hhhHHHHHH
Q 038190 88 PSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPD--VVTLGCLIR 165 (531)
Q Consensus 88 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~li~ 165 (531)
..+......+...|++++|+..|+++.+.. +.+..++..+..++...|++++|...++++.+....++ ..+|..+..
T Consensus 4 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~ 82 (272)
T 3u4t_A 4 DVEFRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGK 82 (272)
T ss_dssp -CHHHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHH
Confidence 345566677778888888888888887764 34555777777888888888888888888877432222 223777788
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCCCCCcHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcC
Q 038190 166 GLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAV 245 (531)
Q Consensus 166 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~ 245 (531)
++...|++++|+..|++.... .|. +..+|..+...|...|++++|...|++..+.. +.+...+..+...+...+
T Consensus 83 ~~~~~~~~~~A~~~~~~a~~~--~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~ 156 (272)
T 3u4t_A 83 ILMKKGQDSLAIQQYQAAVDR--DTT---RLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYNK 156 (272)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--STT---CTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHTT
T ss_pred HHHHcccHHHHHHHHHHHHhc--Ccc---cHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHHH
Confidence 888888888888888888775 332 56678888888888888888888888877652 224555555552333344
Q ss_pred ChhhhhcchHHHHHHHHHHHhCCCCCCccccCCHhhHHHHHHHHhcCCC---HHHHHHHHHHHHhCC-CCCC------HH
Q 038190 246 NWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVL---VDKAKELFLDMKSRG-IIPD------VV 315 (531)
Q Consensus 246 ~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~---~~~a~~~~~~~~~~~-~~~~------~~ 315 (531)
++++|.. .|+...... +.+...+..+..++...|+ +++|...+++..+.. -.|+ ..
T Consensus 157 ~~~~A~~-------~~~~a~~~~-------p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 222 (272)
T 3u4t_A 157 EYVKADS-------SFVKVLELK-------PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIE 222 (272)
T ss_dssp CHHHHHH-------HHHHHHHHS-------TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHH
T ss_pred HHHHHHH-------HHHHHHHhC-------ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHH
Confidence 5555555 555555543 2335566666777766666 666777777665531 1122 24
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHH
Q 038190 316 VYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNT 354 (531)
Q Consensus 316 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~ 354 (531)
+|..+...|...|++++|...|++..+..+. +...+..
T Consensus 223 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~a~~~ 260 (272)
T 3u4t_A 223 ANEYIAYYYTINRDKVKADAAWKNILALDPT-NKKAIDG 260 (272)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCcc-HHHHHHH
Confidence 5666777777888888888888887776432 3444433
No 46
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.58 E-value=4e-12 Score=114.23 Aligned_cols=222 Identities=12% Similarity=-0.025 Sum_probs=134.0
Q ss_pred cHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHh----cCChhhhhcchHHHHHHHHHHHhCCCC
Q 038190 195 NVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCC----AVNWEDAKGNTSAALELHEEFVNGNGE 270 (531)
Q Consensus 195 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~----~~~~~~a~~~~~~a~~~~~~~~~~~~~ 270 (531)
+..++..+...+...|++++|...|++..+.+ +...+..+...|.. .+++++|.. .|+.....+
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~-------~~~~a~~~~-- 72 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAAS-------FYAKACDLN-- 72 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHH-------HHHHHHHTT--
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcCCCHHHHHH-------HHHHHHHCC--
Confidence 34445555555555555555555555555421 33444444455554 444444444 444433322
Q ss_pred CCccccCCHhhHHHHHHHHhc----CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHh
Q 038190 271 LGVICHPDVLSYCSIINSLCK----DVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCL----MGRIDDARKLFVSIES 342 (531)
Q Consensus 271 ~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~ 342 (531)
+...+..+...|.. .+++++|...|++..+.+ +...+..+...|.. .+++++|...|++..+
T Consensus 73 -------~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~ 142 (273)
T 1ouv_A 73 -------YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACD 142 (273)
T ss_dssp -------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHH
T ss_pred -------CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHh
Confidence 34455556666666 677777777777766653 55666666666766 6777777777777766
Q ss_pred cCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc
Q 038190 343 EGCIPDTSSYNTLINSYSK----IEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCK 418 (531)
Q Consensus 343 ~g~~p~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 418 (531)
.+ +...+..+...|.. .+++++|+..|++..+.+ +...+..+...|..
T Consensus 143 ~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~-------------------------~~~a~~~lg~~~~~ 194 (273)
T 1ouv_A 143 LN---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLK-------------------------DSPGCFNAGNMYHH 194 (273)
T ss_dssp TT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-------------------------CHHHHHHHHHHHHH
T ss_pred cC---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC-------------------------CHHHHHHHHHHHHc
Confidence 54 45556666666666 667777777776666543 45566667777777
Q ss_pred ----CCChHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHH----cCCHHHHHHHHHHHHH
Q 038190 419 ----SWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCI----EGGIEKAYDLLPDMEE 469 (531)
Q Consensus 419 ----~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~ 469 (531)
.+++++|...|++..+.+ +...+..+...|.. .+++++|++.|++..+
T Consensus 195 g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~ 250 (273)
T 1ouv_A 195 GEGATKNFKEALARYSKACELE---NGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCK 250 (273)
T ss_dssp TCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHH
T ss_pred CCCCCccHHHHHHHHHHHHhCC---CHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHH
Confidence 777777777777777643 25556666666666 6777777666665544
No 47
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.58 E-value=9.1e-14 Score=125.17 Aligned_cols=153 Identities=8% Similarity=-0.150 Sum_probs=99.7
Q ss_pred CcCCHHHHHHHHHHHHHcCCC---CChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCcch
Q 038190 64 GEVELNDALCFFNYMIHMQPT---PFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSD 140 (531)
Q Consensus 64 ~~g~~~~A~~~~~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~ 140 (531)
..|++++|+..|+.+.+..+. .+..+|..+...+...|++++|+..|+++.+.. +.+..++..+..++...|++++
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~ 95 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDA 95 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHH
Confidence 346888888888888775322 135567777777888888888888888877664 4456677777777777777777
Q ss_pred HHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCCCcHHhHHHHHHHHHhcCChhHHHHHHH
Q 038190 141 AFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFL 220 (531)
Q Consensus 141 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 220 (531)
|...|+++++..+. +..++..+..+|...|++++|...|+++... .| +.......+..+...|++++|...++
T Consensus 96 A~~~~~~al~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~----~~~~~~~~~~~~~~~~~~~~A~~~~~ 168 (275)
T 1xnf_A 96 AYEAFDSVLELDPT-YNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DP----NDPFRSLWLYLAEQKLDEKQAKEVLK 168 (275)
T ss_dssp HHHHHHHHHHHCTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CT----TCHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred HHHHHHHHHhcCcc-ccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CC----CChHHHHHHHHHHHhcCHHHHHHHHH
Confidence 77777777765422 4566677777777777777777777777664 22 22222233333444566666666665
Q ss_pred HHhh
Q 038190 221 DMKG 224 (531)
Q Consensus 221 ~m~~ 224 (531)
+...
T Consensus 169 ~~~~ 172 (275)
T 1xnf_A 169 QHFE 172 (275)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 5444
No 48
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.58 E-value=6.8e-12 Score=112.75 Aligned_cols=224 Identities=16% Similarity=0.025 Sum_probs=158.9
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCCCcHHhHHHHHHHHHh----cCChhHHHHHHHHHhhCCCCCCH
Q 038190 156 DVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCK----DGFVNKVRVLFLDMKGRGIYPDA 231 (531)
Q Consensus 156 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~m~~~g~~p~~ 231 (531)
+..++..+...+...|++++|+..|++.... + +..++..+...|.. .+++++|...|++..+.+ +.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~----~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~ 74 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL----K---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YS 74 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT----T---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC----C---CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CH
Confidence 3445556666666677777777777766652 1 44566666666666 777777777777766654 55
Q ss_pred hhHHHHHHHHHh----cCChhhhhcchHHHHHHHHHHHhCCCCCCccccCCHhhHHHHHHHHhc----CCCHHHHHHHHH
Q 038190 232 FVYNSLIRVYCC----AVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCK----DVLVDKAKELFL 303 (531)
Q Consensus 232 ~~~~~li~~~~~----~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~ 303 (531)
..+..+...|.. .+++++|.. .|+.....+ +..++..+...|.. .+++++|...|+
T Consensus 75 ~a~~~lg~~~~~g~~~~~~~~~A~~-------~~~~a~~~~---------~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~ 138 (273)
T 1ouv_A 75 NGCHLLGNLYYSGQGVSQNTNKALQ-------YYSKACDLK---------YAEGCASLGGIYHDGKVVTRDFKKAVEYFT 138 (273)
T ss_dssp HHHHHHHHHHHHTSSSCCCHHHHHH-------HHHHHHHTT---------CHHHHHHHHHHHHHCSSSCCCHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCcccCHHHHHH-------HHHHHHHcC---------CccHHHHHHHHHHcCCCcccCHHHHHHHHH
Confidence 556666666666 666665555 555444433 45566777777777 788888888888
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHH
Q 038190 304 DMKSRGIIPDVVVYSSLIDGYCL----MGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSK----IEKVEEALSLYGEM 375 (531)
Q Consensus 304 ~~~~~~~~~~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~----~~~~~~a~~~~~~~ 375 (531)
+..+.+ +...+..+...|.. .+++++|...|++..+.+ +...+..+...|.. .+++++|+..|++.
T Consensus 139 ~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a 212 (273)
T 1ouv_A 139 KACDLN---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKA 212 (273)
T ss_dssp HHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHH
T ss_pred HHHhcC---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHH
Confidence 888765 56667777777777 788888888888888764 56677778888888 88888888888887
Q ss_pred HhCCCCCCcccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc----CCChHHHHHHHHHhhhCC
Q 038190 376 ISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCK----SWRLRSAWELFKKLPRYG 436 (531)
Q Consensus 376 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~g 436 (531)
.+.+ +...+..+...|.. .+++++|...|++..+.|
T Consensus 213 ~~~~-------------------------~~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 213 CELE-------------------------NGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp HHTT-------------------------CHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HhCC-------------------------CHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 7653 45677788888888 888999999998888754
No 49
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.57 E-value=3.6e-13 Score=121.05 Aligned_cols=241 Identities=10% Similarity=-0.092 Sum_probs=186.2
Q ss_pred cCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC--HhhHHHHHHHHHccCCcchHH
Q 038190 65 EVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPD--FVSLNILMNCFCKMIGVSDAF 142 (531)
Q Consensus 65 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~--~~~~~~li~~~~~~g~~~~a~ 142 (531)
.|++++|+..|+.+.+..|. +..+|..+...+...|++++|+..++++.+.+..++ ..+|..+...+...|++++|.
T Consensus 16 ~~~~~~A~~~~~~~l~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~ 94 (272)
T 3u4t_A 16 NNNYAEAIEVFNKLEAKKYN-SPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKKGQDSLAI 94 (272)
T ss_dssp TTCHHHHHHHHHHHHHTTCC-CSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred hcCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHcccHHHHH
Confidence 46999999999999997765 666899999999999999999999999998431222 224889999999999999999
Q ss_pred HHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCCCcHHhHHHHHHHHHhcCChhHHHHHHHHH
Q 038190 143 VALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDM 222 (531)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m 222 (531)
..|+++.+..+. +..++..+..+|...|++++|+..|++.... .|. +..+|..+...+...+++++|...|++.
T Consensus 95 ~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~a 168 (272)
T 3u4t_A 95 QQYQAAVDRDTT-RLDMYGQIGSYFYNKGNFPLAIQYMEKQIRP--TTT---DPKVFYELGQAYYYNKEYVKADSSFVKV 168 (272)
T ss_dssp HHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHGGGCCS--SCC---CHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHhcCcc-cHHHHHHHHHHHHHccCHHHHHHHHHHHhhc--CCC---cHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999987543 6679999999999999999999999999875 442 6778888883444456999999999999
Q ss_pred hhCCCCCCHhhHHHHHHHHHhcCC---hhhhhcchHHHHHHHHHHHhCCCCCCccccCCHhhHHHHHHHHhcCCCHHHHH
Q 038190 223 KGRGIYPDAFVYNSLIRVYCCAVN---WEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAK 299 (531)
Q Consensus 223 ~~~g~~p~~~~~~~li~~~~~~~~---~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 299 (531)
.+... .+...+..+...+...++ +++|...+++++++........ ...-..+|..+...|...|++++|.
T Consensus 169 ~~~~p-~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~~~~~~A~ 241 (272)
T 3u4t_A 169 LELKP-NIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKY------KDELIEANEYIAYYYTINRDKVKAD 241 (272)
T ss_dssp HHHST-TCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGG------HHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHhCc-cchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccc------hHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 87532 246777778888888888 7888886666666543211100 0001357888999999999999999
Q ss_pred HHHHHHHhCCCCCCHHHHHHH
Q 038190 300 ELFLDMKSRGIIPDVVVYSSL 320 (531)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~l 320 (531)
+.|++..+.. +-+......+
T Consensus 242 ~~~~~al~~~-p~~~~a~~~l 261 (272)
T 3u4t_A 242 AAWKNILALD-PTNKKAIDGL 261 (272)
T ss_dssp HHHHHHHHHC-TTCHHHHHHH
T ss_pred HHHHHHHhcC-ccHHHHHHHh
Confidence 9999998863 2244444333
No 50
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.57 E-value=1.1e-13 Score=124.67 Aligned_cols=249 Identities=11% Similarity=-0.012 Sum_probs=192.5
Q ss_pred HHccCCHHHHHHHHHHHHhCCCC---CCHhhHHHHHHHHHccCCcchHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCh
Q 038190 97 LAGKKYYVNFICLSERLNTIGLL---PDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKF 173 (531)
Q Consensus 97 ~~~~~~~~~a~~~~~~m~~~g~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 173 (531)
+...|++++|+..|+++.+.... .+..++..+..++...|++++|...|+++++..+. +..++..+..+|...|++
T Consensus 15 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~~~~ 93 (275)
T 1xnf_A 15 LQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPD-MPEVFNYLGIYLTQAGNF 93 (275)
T ss_dssp CCCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCH
T ss_pred cCccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHccCH
Confidence 34568999999999999986421 24568889999999999999999999999987543 688999999999999999
Q ss_pred HHHHHHHHHHHHcCCCCCCCCcHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChhhhhcc
Q 038190 174 TEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGN 253 (531)
Q Consensus 174 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~ 253 (531)
++|+..|++.... .|. +..++..+...|...|++++|...|+++.+. .|+.......+..+...|++++|..
T Consensus 94 ~~A~~~~~~al~~--~~~---~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~- 165 (275)
T 1xnf_A 94 DAAYEAFDSVLEL--DPT---YNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKE- 165 (275)
T ss_dssp HHHHHHHHHHHHH--CTT---CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHH-
T ss_pred HHHHHHHHHHHhc--Ccc---ccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHH-
Confidence 9999999999986 442 6788999999999999999999999999875 3444444445555566677777776
Q ss_pred hHHHHHHHHHHHhCCCCCCccccCCHhhHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCC---CHHHHHHHHHHHHhcCCH
Q 038190 254 TSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIP---DVVVYSSLIDGYCLMGRI 330 (531)
Q Consensus 254 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~ll~~~~~~g~~ 330 (531)
.+....... +++...+ .++..+...++.++|...++...+..... +..++..+...|...|++
T Consensus 166 ------~~~~~~~~~-------~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 231 (275)
T 1xnf_A 166 ------VLKQHFEKS-------DKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDL 231 (275)
T ss_dssp ------HHHHHHHHS-------CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCH
T ss_pred ------HHHHHHhcC-------CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCH
Confidence 776665543 2333344 47788888999999999999987653211 257788899999999999
Q ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 038190 331 DDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLY 372 (531)
Q Consensus 331 ~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~ 372 (531)
++|...|++..+.. |+. +.....++...|++++|++.+
T Consensus 232 ~~A~~~~~~al~~~--p~~--~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 232 DSATALFKLAVANN--VHN--FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp HHHHHHHHHHHTTC--CTT--CHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHhCC--chh--HHHHHHHHHHHHHHHhhHHHH
Confidence 99999999999874 322 334456777888999988776
No 51
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.56 E-value=2.4e-12 Score=111.89 Aligned_cols=208 Identities=8% Similarity=-0.064 Sum_probs=173.0
Q ss_pred CCHhhHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 038190 277 PDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLI 356 (531)
Q Consensus 277 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li 356 (531)
.+...+..+...+...|++++|..+++.+.+.. +.+...+..+...|...|++++|...++++.+.... +...+..+.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~ 83 (225)
T 2vq2_A 6 QVSNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPD-SAEINNNYG 83 (225)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-ChHHHHHHH
Confidence 456678889999999999999999999988763 346788999999999999999999999999887543 678889999
Q ss_pred HHHHhc-CCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHhhhC
Q 038190 357 NSYSKI-EKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRY 435 (531)
Q Consensus 357 ~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 435 (531)
..|... |++++|...++++.+.+..|. +...+..+..++...|++++|...++++.+.
T Consensus 84 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~---------------------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 142 (225)
T 2vq2_A 84 WFLCGRLNRPAESMAYFDKALADPTYPT---------------------PYIANLNKGICSAKQGQFGLAEAYLKRSLAA 142 (225)
T ss_dssp HHHHTTTCCHHHHHHHHHHHHTSTTCSC---------------------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhcCcHHHHHHHHHHHHcCcCCcc---------------------hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 999999 999999999999987322232 5778999999999999999999999999875
Q ss_pred CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChhHHHhh
Q 038190 436 GPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNL 515 (531)
Q Consensus 436 g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~i~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 515 (531)
. +.+...+..+..++...|++++|.+.++++.+. ....+...+..+...+...|+.++|..+
T Consensus 143 ~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 204 (225)
T 2vq2_A 143 Q-PQFPPAFKELARTKMLAGQLGDADYYFKKYQSR-----------------VEVLQADDLLLGWKIAKALGNAQAAYEY 204 (225)
T ss_dssp S-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----------------HCSCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred C-CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----------------CCCCCHHHHHHHHHHHHhcCcHHHHHHH
Confidence 3 235788889999999999999998888765442 2214667788888889999999999999
Q ss_pred HHHhhhcchh
Q 038190 516 LPSFLSRNQE 525 (531)
Q Consensus 516 ~~~~~~~~~~ 525 (531)
++.+...++.
T Consensus 205 ~~~~~~~~p~ 214 (225)
T 2vq2_A 205 EAQLQANFPY 214 (225)
T ss_dssp HHHHHHHCTT
T ss_pred HHHHHHhCCC
Confidence 9998765543
No 52
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.56 E-value=1.2e-13 Score=132.03 Aligned_cols=312 Identities=13% Similarity=0.036 Sum_probs=206.0
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCCCc--HHhHHHHHHHHHhcCChhHHHHHHHHHhhC----CCCC
Q 038190 156 DVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPN--VICYASIIDGLCKDGFVNKVRVLFLDMKGR----GIYP 229 (531)
Q Consensus 156 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~----g~~p 229 (531)
....+......+...|++++|+..|++.... .|.. +. ..+|..+...+...|++++|...|++.... +-.|
T Consensus 8 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~--~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 84 (406)
T 3sf4_A 8 SCLELALEGERLCKSGDCRAGVSFFEAAVQV--GTED-LKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQL 84 (406)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSC-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhc--Cccc-HHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccH
Confidence 3444555566666777777777777776665 2210 11 245666667777777777777777665332 1111
Q ss_pred -CHhhHHHHHHHHHhcCChhhhhcchHHHHHHHHHHHhCCCCCCccccCCHhhHHHHHHHHhcCCC--------------
Q 038190 230 -DAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVL-------------- 294 (531)
Q Consensus 230 -~~~~~~~li~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~-------------- 294 (531)
...++..+...+...|++++|...+++++++...... ......++..+...+...|+
T Consensus 85 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~--------~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~ 156 (406)
T 3sf4_A 85 GEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELND--------KVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFP 156 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC--------HHHHHHHHHHHHHHHHHHHHTCC-------CCCC
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhccc--------ccchHHHHHHHHHHHHHcCCcccccccchhhhhh
Confidence 2345666667777778888887777776666655421 11224567778888888888
Q ss_pred ------HHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-CC----HHHHHHHHHH
Q 038190 295 ------VDKAKELFLDMKSR----GIIP-DVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCI-PD----TSSYNTLINS 358 (531)
Q Consensus 295 ------~~~a~~~~~~~~~~----~~~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~-p~----~~~~~~li~~ 358 (531)
+++|...+++..+. +..+ ...++..+...|...|++++|...+++..+.... ++ ..++..+...
T Consensus 157 ~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~ 236 (406)
T 3sf4_A 157 EEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNA 236 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHH
Confidence 89999888876542 1111 2456788888999999999999999987653111 12 2378888899
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHcCCChHHHHHHHHHhhhC--
Q 038190 359 YSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFE-LDLTVFNCLVDGLCKSWRLRSAWELFKKLPRY-- 435 (531)
Q Consensus 359 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-- 435 (531)
|...|++++|...+++..+... +.+.. ....++..+...|...|++++|...+++..+.
T Consensus 237 ~~~~g~~~~A~~~~~~al~~~~------------------~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 298 (406)
T 3sf4_A 237 YIFLGEFETASEYYKKTLLLAR------------------QLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQ 298 (406)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHH------------------HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHcCChHHHHHHHHHHHHHHH------------------hCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHH
Confidence 9999999999999988764210 00000 02557889999999999999999999988752
Q ss_pred --CCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhccCCh
Q 038190 436 --GPEP-NVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECLKAIELLHKMAKRYVKP-DEITVSILEELLNKDENC 509 (531)
Q Consensus 436 --g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~i~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~ 509 (531)
+-.+ ...++..+..+|...|++++|++.+++..+ +.... +..+ ...++..+..++...|+.
T Consensus 299 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~----------~~~~~---~~~~~~~~~~~~l~~~~~~~g~~ 363 (406)
T 3sf4_A 299 ELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE----------ISREV---GDKSGELTARLNLSDLQMVLGLS 363 (406)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH----------HHHHT---TCHHHHHHHHHHHHHHHHHHHTT
T ss_pred hcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----------HHHHh---cCCcchhHHHHHHHHHHHHhhHh
Confidence 1111 155778889999999999999999876543 22222 2222 234566677777777765
No 53
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.56 E-value=1.4e-12 Score=122.08 Aligned_cols=248 Identities=12% Similarity=-0.015 Sum_probs=151.6
Q ss_pred HhhHHHHHHHHHccCCcchHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCC-hHHHHHHHHHHHHcCCCCCCCCcHHhHH
Q 038190 122 FVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGK-FTEASGLFTKFVAFDCRPNVIPNVICYA 200 (531)
Q Consensus 122 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~-~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 200 (531)
..+|..+..++.+.|++++|+..++++++..+. +..+|+.+..++...|+ +++|+..|++.+.. .|+ +..+|+
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~-~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l--~P~---~~~a~~ 170 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELNAA-NYTVWHFRRVLLKSLQKDLHEEMNYITAIIEE--QPK---NYQVWH 170 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH--CTT---CHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhCcc-CHHHHHHHHHHHHHcccCHHHHHHHHHHHHHH--CCC---CHHHHH
Confidence 345666666666667777777777777666433 55666667777777775 77777777777665 332 566666
Q ss_pred HHHHHHHhcCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChhhhhcchHHHHHHHHHHHhCCCCCCccccCCHh
Q 038190 201 SIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVL 280 (531)
Q Consensus 201 ~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 280 (531)
.+..++...|++++|+..|+++.+.... +...|..+..+
T Consensus 171 ~~g~~~~~~g~~~eAl~~~~kal~ldP~-~~~a~~~lg~~---------------------------------------- 209 (382)
T 2h6f_A 171 HRRVLVEWLRDPSQELEFIADILNQDAK-NYHAWQHRQWV---------------------------------------- 209 (382)
T ss_dssp HHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHH----------------------------------------
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHhCcc-CHHHHHHHHHH----------------------------------------
Confidence 6666666666666666666666553211 34444444444
Q ss_pred hHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh-cCCHHHH-----HHHHHHHHhcCCCCCHHHHHH
Q 038190 281 SYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCL-MGRIDDA-----RKLFVSIESEGCIPDTSSYNT 354 (531)
Q Consensus 281 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~-~g~~~~a-----~~~~~~~~~~g~~p~~~~~~~ 354 (531)
+...|++++|+..|+++.+... -+...|+.+..++.. .|..++| ...|++.+..... +...|..
T Consensus 210 --------~~~~g~~~eAl~~~~~al~l~P-~~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~P~-~~~a~~~ 279 (382)
T 2h6f_A 210 --------IQEFKLWDNELQYVDQLLKEDV-RNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPH-NESAWNY 279 (382)
T ss_dssp --------HHHHTCCTTHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTT-CHHHHHH
T ss_pred --------HHHcCChHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHCCC-CHHHHHH
Confidence 4444455555555555444321 134445555555554 3333444 4667776665433 5667777
Q ss_pred HHHHHHhcC--CHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCC---------ChH
Q 038190 355 LINSYSKIE--KVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSW---------RLR 423 (531)
Q Consensus 355 li~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---------~~~ 423 (531)
+...+...| ++++|++.+.++ + ..|+ +...+..++.+|.+.| .++
T Consensus 280 l~~ll~~~g~~~~~~a~~~~~~~-~--~~p~---------------------~~~al~~La~~~~~~~~~~~~~~~~~~~ 335 (382)
T 2h6f_A 280 LKGILQDRGLSKYPNLLNQLLDL-Q--PSHS---------------------SPYLIAFLVDIYEDMLENQCDNKEDILN 335 (382)
T ss_dssp HHHHHTTTCGGGCHHHHHHHHHH-T--TTCC---------------------CHHHHHHHHHHHHHHHHTTCSSHHHHHH
T ss_pred HHHHHHccCccchHHHHHHHHHh-c--cCCC---------------------CHHHHHHHHHHHHHHhcccccchHHHHH
Confidence 777777777 578888877776 2 3333 6788888888888864 258
Q ss_pred HHHHHHHHh-hhCCCCCc-HHHHHHHHHHHH
Q 038190 424 SAWELFKKL-PRYGPEPN-VVTYTVMICGLC 452 (531)
Q Consensus 424 ~A~~~~~~~-~~~g~~p~-~~~~~~l~~~~~ 452 (531)
+|.++|+++ .+. .|. ...|..+...+.
T Consensus 336 ~A~~~~~~l~~~~--DP~r~~~w~~~~~~l~ 364 (382)
T 2h6f_A 336 KALELCEILAKEK--DTIRKEYWRYIGRSLQ 364 (382)
T ss_dssp HHHHHHHHHHHTT--CGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh--CchhHHHHHHHHHHHH
Confidence 999999998 653 454 445665555544
No 54
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.56 E-value=9.9e-13 Score=116.68 Aligned_cols=132 Identities=10% Similarity=-0.098 Sum_probs=68.8
Q ss_pred hhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCcchHHHHHHHHHHCCCCCChhhHHHHHHHH
Q 038190 88 PSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGL 167 (531)
Q Consensus 88 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 167 (531)
..|..+...+...|++++|+..|+++.+.. +.+..++..+..++...|++++|...++++.+.... +..++..+...|
T Consensus 38 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~ 115 (252)
T 2ho1_A 38 DAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASDSR-NARVLNNYGGFL 115 (252)
T ss_dssp HHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC-cHHHHHHHHHHH
Confidence 445555555666666666666666665543 334445555555555555555555555555554321 344555555555
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCCCCCcHHhHHHHHHHHHhcCChhHHHHHHHHHhh
Q 038190 168 CMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKG 224 (531)
Q Consensus 168 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 224 (531)
...|++++|+..|+++...+..| .+...+..+...+...|++++|...|++..+
T Consensus 116 ~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 169 (252)
T 2ho1_A 116 YEQKRYEEAYQRLLEASQDTLYP---ERSRVFENLGLVSLQMKKPAQAKEYFEKSLR 169 (252)
T ss_dssp HHTTCHHHHHHHHHHHTTCTTCT---THHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHhCccCc---ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 55555555555555554411122 1344455555555555555555555555443
No 55
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.56 E-value=3.4e-12 Score=113.15 Aligned_cols=202 Identities=14% Similarity=-0.018 Sum_probs=162.2
Q ss_pred HhhHHHHHHHHHccCCcchHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCCCcHHhHHH
Q 038190 122 FVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYAS 201 (531)
Q Consensus 122 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (531)
...+..+...+...|++++|...|+++.+... .+..++..+..+|...|++++|+..|+++... .|. +..++..
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~--~~~---~~~~~~~ 110 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDP-SSADAHAALAVVFQTEMEPKLADEEYRKALAS--DSR---NARVLNN 110 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTT---CHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCC-ChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcC---cHHHHHH
Confidence 45677888888899999999999999988753 36778888999999999999999999998876 332 6778889
Q ss_pred HHHHHHhcCChhHHHHHHHHHhhCCCCC-CHhhHHHHHHHHHhcCChhhhhcchHHHHHHHHHHHhCCCCCCccccCCHh
Q 038190 202 IIDGLCKDGFVNKVRVLFLDMKGRGIYP-DAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVL 280 (531)
Q Consensus 202 l~~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 280 (531)
+...+...|++++|..+|+++...+..| +...+..+...+...|++++|.. .++...... +.+..
T Consensus 111 la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~-------~~~~~~~~~-------~~~~~ 176 (252)
T 2ho1_A 111 YGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKE-------YFEKSLRLN-------RNQPS 176 (252)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHH-------HHHHHHHHC-------SCCHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHH-------HHHHHHhcC-------cccHH
Confidence 9999999999999999999988743344 45667778888888888888888 555555543 33567
Q ss_pred hHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 038190 281 SYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEG 344 (531)
Q Consensus 281 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g 344 (531)
.+..+...+...|++++|..+++.+.+.. +.+...+..+...+...|++++|.+.++++.+..
T Consensus 177 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~ 239 (252)
T 2ho1_A 177 VALEMADLLYKEREYVPARQYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLY 239 (252)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 78888888889999999999998887753 3466777888888888899999999998888764
No 56
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.54 E-value=2.6e-13 Score=130.09 Aligned_cols=280 Identities=14% Similarity=0.051 Sum_probs=202.4
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCH----hhHHHHHHHHHccCCcchHHHHHHHHHHC----C-CCCChhh
Q 038190 89 SFNSLLGALAGKKYYVNFICLSERLNTIGLLPDF----VSLNILMNCFCKMIGVSDAFVALGRILRK----V-FSPDVVT 159 (531)
Q Consensus 89 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~----~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~-~~~~~~~ 159 (531)
.+..+...+...|++++|+..|+++.+.+ +.+. .++..+..++...|++++|...++++++. + ......+
T Consensus 50 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 128 (411)
T 4a1s_A 50 ELALEGERLCNAGDCRAGVAFFQAAIQAG-TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKS 128 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHhc-ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHH
Confidence 34455667778888888888888887764 2233 46777788888888888888888877653 1 1223457
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-CCCcHHhHHHHHHHHHhcCC-----------------hhHHHHHHHH
Q 038190 160 LGCLIRGLCMQGKFTEASGLFTKFVAFDCRPN-VIPNVICYASIIDGLCKDGF-----------------VNKVRVLFLD 221 (531)
Q Consensus 160 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~-----------------~~~a~~~~~~ 221 (531)
+..+...|...|++++|+..|++........+ ......++..+...|...|+ +++|...+++
T Consensus 129 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~ 208 (411)
T 4a1s_A 129 SGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQE 208 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHH
Confidence 77888888899999999988888765411100 00134578888888999999 8888888877
Q ss_pred HhhC----CCC-CCHhhHHHHHHHHHhcCChhhhhcchHHHHHHHHHHHhCCCCCCccccCCHhhHHHHHHHHhcCCCHH
Q 038190 222 MKGR----GIY-PDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVD 296 (531)
Q Consensus 222 m~~~----g~~-p~~~~~~~li~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 296 (531)
..+. +.. ....++..+...+...|++++|...+++++++...... ......++..+...|...|+++
T Consensus 209 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~--------~~~~~~~~~~la~~~~~~g~~~ 280 (411)
T 4a1s_A 209 NLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGD--------RAAERRANSNLGNSHIFLGQFE 280 (411)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC--------HHHHHHHHHHHHHHHHTTTCHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCC--------cHHHHHHHHHHHHHHHHCcCHH
Confidence 6542 111 12346777888899999999999988887777665321 1122447888999999999999
Q ss_pred HHHHHHHHHHhCCC--C---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-----CCHHHHHHHHHHHHhcCCHH
Q 038190 297 KAKELFLDMKSRGI--I---PDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCI-----PDTSSYNTLINSYSKIEKVE 366 (531)
Q Consensus 297 ~a~~~~~~~~~~~~--~---~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~-----p~~~~~~~li~~~~~~~~~~ 366 (531)
+|...+++..+... . ....++..+...|...|++++|...+++..+.... ....++..+...|...|+++
T Consensus 281 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 360 (411)
T 4a1s_A 281 DAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHE 360 (411)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHH
Confidence 99999988765411 0 12467788888999999999999999987653110 12347778889999999999
Q ss_pred HHHHHHHHHHh
Q 038190 367 EALSLYGEMIS 377 (531)
Q Consensus 367 ~a~~~~~~~~~ 377 (531)
+|...|++..+
T Consensus 361 ~A~~~~~~al~ 371 (411)
T 4a1s_A 361 RALKYAEQHLQ 371 (411)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999998876
No 57
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.54 E-value=1.9e-12 Score=112.46 Aligned_cols=160 Identities=13% Similarity=-0.049 Sum_probs=83.7
Q ss_pred hhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCcchHHHHHHHHHHCCCCCChhhHHHHHHH
Q 038190 87 MPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRG 166 (531)
Q Consensus 87 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 166 (531)
...|..+...+...|++++|+..++++.+.. +.+..++..+...+...|++++|...++++.+..+ .+..++..+...
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~ 85 (225)
T 2vq2_A 8 SNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKP-DSAEINNNYGWF 85 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC-CChHHHHHHHHH
Confidence 4455556666666666666666666665543 33455555555666666666666666666555432 244455555555
Q ss_pred HHhc-CChHHHHHHHHHHHHcCCCCCCCCcHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcC
Q 038190 167 LCMQ-GKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAV 245 (531)
Q Consensus 167 ~~~~-g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~ 245 (531)
+... |++++|+..++++......| .+..++..+...+...|++++|...|+++.+... .+...+..+...+...|
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~ 161 (225)
T 2vq2_A 86 LCGRLNRPAESMAYFDKALADPTYP---TPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQP-QFPPAFKELARTKMLAG 161 (225)
T ss_dssp HHTTTCCHHHHHHHHHHHHTSTTCS---CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHT
T ss_pred HHHhcCcHHHHHHHHHHHHcCcCCc---chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCchHHHHHHHHHHHcC
Confidence 5666 66666666665555411111 1344555555555555555555555555544311 12334444444444444
Q ss_pred Chhhhhc
Q 038190 246 NWEDAKG 252 (531)
Q Consensus 246 ~~~~a~~ 252 (531)
++++|..
T Consensus 162 ~~~~A~~ 168 (225)
T 2vq2_A 162 QLGDADY 168 (225)
T ss_dssp CHHHHHH
T ss_pred CHHHHHH
Confidence 4444444
No 58
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.54 E-value=2.5e-13 Score=129.82 Aligned_cols=284 Identities=14% Similarity=0.052 Sum_probs=210.7
Q ss_pred CChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC----HhhHHHHHHHHHccCCcchHHHHHHHHHHC----CCC-C
Q 038190 85 PFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPD----FVSLNILMNCFCKMIGVSDAFVALGRILRK----VFS-P 155 (531)
Q Consensus 85 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~----~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~~-~ 155 (531)
.....+......+...|++++|+..|+++.+.+ +.+ ..++..+...+...|+++.|...++++... +.. .
T Consensus 7 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 85 (406)
T 3sf4_A 7 ASCLELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLG 85 (406)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHH
Confidence 355566777788889999999999999998774 333 356778888899999999999999887653 111 1
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-CCCcHHhHHHHHHHHHhcCC--------------------hhH
Q 038190 156 DVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPN-VIPNVICYASIIDGLCKDGF--------------------VNK 214 (531)
Q Consensus 156 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~--------------------~~~ 214 (531)
...++..+...|...|++++|+..+++......... ......++..+...|...|+ +++
T Consensus 86 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~ 165 (406)
T 3sf4_A 86 EAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQA 165 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHH
Confidence 245778888999999999999999988775421110 00124478888899999999 999
Q ss_pred HHHHHHHHhhC----CCCC-CHhhHHHHHHHHHhcCChhhhhcchHHHHHHHHHHHhCCCCCCccccCCHhhHHHHHHHH
Q 038190 215 VRVLFLDMKGR----GIYP-DAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSL 289 (531)
Q Consensus 215 a~~~~~~m~~~----g~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~ 289 (531)
|...+++.... +..+ ...++..+...+...|++++|...+++++++...... ......++..+...+
T Consensus 166 A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~--------~~~~~~~~~~la~~~ 237 (406)
T 3sf4_A 166 AVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGD--------KAAERRAYSNLGNAY 237 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCC--------cHHHHHHHHHHHHHH
Confidence 99998876532 2111 2346777888899999999999988887777655211 112244788899999
Q ss_pred hcCCCHHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-CC----HHHHHHHHHHH
Q 038190 290 CKDVLVDKAKELFLDMKSR----GIIP-DVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCI-PD----TSSYNTLINSY 359 (531)
Q Consensus 290 ~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~-p~----~~~~~~li~~~ 359 (531)
...|++++|...+++..+. +..+ ...++..+...|...|++++|...+++..+.... .+ ..++..+...|
T Consensus 238 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~ 317 (406)
T 3sf4_A 238 IFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAY 317 (406)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHH
Confidence 9999999999999987653 1111 1557788889999999999999999987653111 11 45778888999
Q ss_pred HhcCCHHHHHHHHHHHHh
Q 038190 360 SKIEKVEEALSLYGEMIS 377 (531)
Q Consensus 360 ~~~~~~~~a~~~~~~~~~ 377 (531)
...|++++|...+++..+
T Consensus 318 ~~~g~~~~A~~~~~~al~ 335 (406)
T 3sf4_A 318 TALGNHDQAMHFAEKHLE 335 (406)
T ss_dssp HHHTCHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHH
Confidence 999999999999988754
No 59
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.54 E-value=2.2e-13 Score=130.61 Aligned_cols=286 Identities=11% Similarity=0.044 Sum_probs=195.5
Q ss_pred hhHHHHHHHHHccCCcchHHHHHHHHHHCCCCCCh----hhHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-CCCCCcHH
Q 038190 123 VSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDV----VTLGCLIRGLCMQGKFTEASGLFTKFVAFDCR-PNVIPNVI 197 (531)
Q Consensus 123 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~ 197 (531)
..+..+...+...|++++|...|+++++.... +. .++..+...|...|++++|+..|++....... .+......
T Consensus 49 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 127 (411)
T 4a1s_A 49 LELALEGERLCNAGDCRAGVAFFQAAIQAGTE-DLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAK 127 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHhccc-ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHH
Confidence 34555667888999999999999999987533 33 47888999999999999999999988754111 10112456
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHhhC----C-CCCCHhhHHHHHHHHHhcCC-----------------hhhhhcchH
Q 038190 198 CYASIIDGLCKDGFVNKVRVLFLDMKGR----G-IYPDAFVYNSLIRVYCCAVN-----------------WEDAKGNTS 255 (531)
Q Consensus 198 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~----g-~~p~~~~~~~li~~~~~~~~-----------------~~~a~~~~~ 255 (531)
++..+...|...|++++|...|++..+. + ......++..+...|...|+ +++|...++
T Consensus 128 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~ 207 (411)
T 4a1s_A 128 SSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQ 207 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHH
Confidence 7889999999999999999999887653 1 11134567778888999999 666666555
Q ss_pred HHHHHHHHHHhCCCCCCccccCCHhhHHHHHHHHhcCCCHHHHHHHHHHHHhCCCC-CC----HHHHHHHHHHHHhcCCH
Q 038190 256 AALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGII-PD----VVVYSSLIDGYCLMGRI 330 (531)
Q Consensus 256 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~ll~~~~~~g~~ 330 (531)
+++++...... ......++..+...+...|++++|...+++..+.... .+ ..++..+...|...|++
T Consensus 208 ~al~~~~~~~~--------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 279 (411)
T 4a1s_A 208 ENLKLMRDLGD--------RGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQF 279 (411)
T ss_dssp HHHHHHHHHTC--------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCH
T ss_pred HHHHHHHHcCC--------HHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCH
Confidence 55555544321 1223457888888999999999999999887654110 11 23677788888889999
Q ss_pred HHHHHHHHHHHhcCCC-----CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHhCCCCCC
Q 038190 331 DDARKLFVSIESEGCI-----PDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELD 405 (531)
Q Consensus 331 ~~a~~~~~~~~~~g~~-----p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 405 (531)
++|...+++..+.... ....++..+...|...|++++|...+++..+.. .... .....
T Consensus 280 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~---------------~~~~--~~~~~ 342 (411)
T 4a1s_A 280 EDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIA---------------QELG--DRIGE 342 (411)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH---------------HHHT--CHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH---------------HHCC--ChHHH
Confidence 9999888887653111 014566777778888888888888877765410 0000 00002
Q ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHhhh
Q 038190 406 LTVFNCLVDGLCKSWRLRSAWELFKKLPR 434 (531)
Q Consensus 406 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 434 (531)
..++..+..+|...|++++|..+|++..+
T Consensus 343 ~~~~~~la~~~~~~g~~~~A~~~~~~al~ 371 (411)
T 4a1s_A 343 ARACWSLGNAHSAIGGHERALKYAEQHLQ 371 (411)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 33555666666666666666666666655
No 60
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.53 E-value=1.3e-12 Score=115.20 Aligned_cols=206 Identities=14% Similarity=0.093 Sum_probs=156.8
Q ss_pred CCHhhHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 038190 277 PDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLI 356 (531)
Q Consensus 277 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li 356 (531)
.....|..+...+...|++++|..+|+++.+.. +.+...+..+...|...|++++|...++++.+.... +...+..+.
T Consensus 21 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la 98 (243)
T 2q7f_A 21 MASMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELDSS-AATAYYGAG 98 (243)
T ss_dssp ---------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCc-chHHHHHHH
Confidence 455678888889999999999999999998863 346888899999999999999999999999887543 678889999
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHhhhCC
Q 038190 357 NSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYG 436 (531)
Q Consensus 357 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g 436 (531)
..|...|++++|...++++.+.. | .+...+..+...+...|++++|..+++++.+..
T Consensus 99 ~~~~~~~~~~~A~~~~~~~~~~~--~---------------------~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~ 155 (243)
T 2q7f_A 99 NVYVVKEMYKEAKDMFEKALRAG--M---------------------ENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN 155 (243)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHT--C---------------------CSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC
T ss_pred HHHHHhccHHHHHHHHHHHHHhC--C---------------------CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 99999999999999999988743 2 267889999999999999999999999998752
Q ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChhHHHhhH
Q 038190 437 PEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLL 516 (531)
Q Consensus 437 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~i~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 516 (531)
+.+...+..+...+...|++++|++.|+++.+. . +.+..++..++.+|.+.|++++|...+
T Consensus 156 -~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----------------~-~~~~~~~~~la~~~~~~~~~~~A~~~~ 216 (243)
T 2q7f_A 156 -ENDTEARFQFGMCLANEGMLDEALSQFAAVTEQ-----------------D-PGHADAFYNAGVTYAYKENREKALEML 216 (243)
T ss_dssp -TTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHH-----------------C-TTCHHHHHHHHHHHHHTTCTTHHHHHH
T ss_pred -CccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----------------C-cccHHHHHHHHHHHHHccCHHHHHHHH
Confidence 346788889999999999999998888765442 2 345778899999999999999999999
Q ss_pred HHhhhcchhh
Q 038190 517 PSFLSRNQEE 526 (531)
Q Consensus 517 ~~~~~~~~~~ 526 (531)
++....++..
T Consensus 217 ~~~~~~~p~~ 226 (243)
T 2q7f_A 217 DKAIDIQPDH 226 (243)
T ss_dssp HHHHHHCTTC
T ss_pred HHHHccCcch
Confidence 9987765543
No 61
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.53 E-value=6e-13 Score=117.30 Aligned_cols=201 Identities=9% Similarity=-0.082 Sum_probs=100.6
Q ss_pred ChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCcchHHHHHHHHHHCCCCCChhhHHHHHH
Q 038190 86 FMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIR 165 (531)
Q Consensus 86 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 165 (531)
....|..+...+...|++++|+..|+++.+.. +.+..++..+...+...|++++|...++++.+... .+..++..+..
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~ 99 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELDS-SAATAYYGAGN 99 (243)
T ss_dssp --------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-cchHHHHHHHH
Confidence 34455555666666666666666666666543 33455666666666666666666666666665532 24556666666
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCCCCCcHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcC
Q 038190 166 GLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAV 245 (531)
Q Consensus 166 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~ 245 (531)
.+...|++++|+..++++.... | .+..++..+...+...|++++|...++++.+.. +.+...+..+...+...|
T Consensus 100 ~~~~~~~~~~A~~~~~~~~~~~--~---~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~ 173 (243)
T 2q7f_A 100 VYVVKEMYKEAKDMFEKALRAG--M---ENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEG 173 (243)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHT--C---CSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHT
T ss_pred HHHHhccHHHHHHHHHHHHHhC--C---CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcC
Confidence 6666666666666666666542 2 145556666666666666666666666655432 123444555555555555
Q ss_pred ChhhhhcchHHHHHHHHHHHhCCCCCCccccCCHhhHHHHHHHHhcCCCHHHHHHHHHHHHhC
Q 038190 246 NWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSR 308 (531)
Q Consensus 246 ~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 308 (531)
++++|.. .++...... +.+..++..+..++...|++++|...++++.+.
T Consensus 174 ~~~~A~~-------~~~~~~~~~-------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 222 (243)
T 2q7f_A 174 MLDEALS-------QFAAVTEQD-------PGHADAFYNAGVTYAYKENREKALEMLDKAIDI 222 (243)
T ss_dssp CCHHHHH-------HHHHHHHHC-------TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred CHHHHHH-------HHHHHHHhC-------cccHHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence 5555555 333333322 223444555555555555555555555555543
No 62
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.52 E-value=4.3e-13 Score=124.48 Aligned_cols=281 Identities=14% Similarity=0.065 Sum_probs=198.5
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC----HhhHHHHHHHHHccCCcchHHHHHHHHHHC----CC-CCChhh
Q 038190 89 SFNSLLGALAGKKYYVNFICLSERLNTIGLLPD----FVSLNILMNCFCKMIGVSDAFVALGRILRK----VF-SPDVVT 159 (531)
Q Consensus 89 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~----~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~-~~~~~~ 159 (531)
.+......+...|++++|+..|+++.+.. +.+ ..++..+...+...|+++.|...++++.+. +. .....+
T Consensus 7 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 85 (338)
T 3ro2_A 7 ELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKA 85 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHH
Confidence 34445566778888888888888887764 223 356777777888888888888888776543 11 112456
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-CCCcHHhHHHHHHHHHhcCC--------------------hhHHHHH
Q 038190 160 LGCLIRGLCMQGKFTEASGLFTKFVAFDCRPN-VIPNVICYASIIDGLCKDGF--------------------VNKVRVL 218 (531)
Q Consensus 160 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~--------------------~~~a~~~ 218 (531)
+..+...+...|++++|...+++........+ ......++..+...+...|+ +++|...
T Consensus 86 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~ 165 (338)
T 3ro2_A 86 SGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDL 165 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHH
Confidence 77788888888999999888888765421111 00113477788888888888 8888888
Q ss_pred HHHHhhC----CCCC-CHhhHHHHHHHHHhcCChhhhhcchHHHHHHHHHHHhCCCCCCccccCCHhhHHHHHHHHhcCC
Q 038190 219 FLDMKGR----GIYP-DAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDV 293 (531)
Q Consensus 219 ~~~m~~~----g~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ 293 (531)
+++.... +..+ ....+..+...+...|++++|...+++++++...... ......++..+...+...|
T Consensus 166 ~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~--------~~~~~~~~~~l~~~~~~~g 237 (338)
T 3ro2_A 166 YEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGD--------KAAERRAYSNLGNAYIFLG 237 (338)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTC--------HHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCC--------hHHHHHHHHHHHHHHHHcC
Confidence 8776432 1111 2346777788888999999999977777777655321 1223457888899999999
Q ss_pred CHHHHHHHHHHHHhCCCC-CC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC----C-CCHHHHHHHHHHHHhcC
Q 038190 294 LVDKAKELFLDMKSRGII-PD----VVVYSSLIDGYCLMGRIDDARKLFVSIESEGC----I-PDTSSYNTLINSYSKIE 363 (531)
Q Consensus 294 ~~~~a~~~~~~~~~~~~~-~~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~----~-p~~~~~~~li~~~~~~~ 363 (531)
++++|...+++..+.... .+ ..++..+...|...|++++|...+++..+... . ....++..+...|.+.|
T Consensus 238 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g 317 (338)
T 3ro2_A 238 EFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALG 317 (338)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcC
Confidence 999999999887653110 11 55677888899999999999999998765311 1 11346778889999999
Q ss_pred CHHHHHHHHHHHHhC
Q 038190 364 KVEEALSLYGEMISM 378 (531)
Q Consensus 364 ~~~~a~~~~~~~~~~ 378 (531)
++++|...+++..+.
T Consensus 318 ~~~~A~~~~~~a~~~ 332 (338)
T 3ro2_A 318 NHDQAMHFAEKHLEI 332 (338)
T ss_dssp CHHHHHHHHHHHHHC
T ss_pred ChHHHHHHHHHHHHH
Confidence 999999999998763
No 63
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.50 E-value=4.6e-12 Score=123.16 Aligned_cols=217 Identities=11% Similarity=-0.011 Sum_probs=180.0
Q ss_pred hcchHHHHHHHHHHHhCCCCCCccccCCHhhHHHHHHHHhcCCCH-HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 038190 251 KGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLV-DKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGR 329 (531)
Q Consensus 251 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~ 329 (531)
...+++++..++...... +.+...+..+...+...|++ ++|.+.|++..+.. +.+...|..+..+|...|+
T Consensus 81 ~~~~~~al~~l~~~~~~~-------~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~ 152 (474)
T 4abn_A 81 QEEMEKTLQQMEEVLGSA-------QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGD 152 (474)
T ss_dssp HHHHHHHHHHHHHHHTTC-------CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHhccC-------chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCC
Confidence 344566666777766544 45788899999999999999 99999999998863 3358899999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc---------CCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHhC
Q 038190 330 IDDARKLFVSIESEGCIPDTSSYNTLINSYSKI---------EKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNT 400 (531)
Q Consensus 330 ~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~---------~~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 400 (531)
+++|...|++..+.. |+...+..+...|... |++++|+..|++..+.. |+
T Consensus 153 ~~~A~~~~~~al~~~--p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~--p~----------------- 211 (474)
T 4abn_A 153 VTSAHTCFSGALTHC--KNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD--VL----------------- 211 (474)
T ss_dssp HHHHHHHHHHHHTTC--CCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC--TT-----------------
T ss_pred HHHHHHHHHHHHhhC--CCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC--CC-----------------
Confidence 999999999999874 6678899999999999 99999999999988742 32
Q ss_pred CCCCCHHHHHHHHHHHHcC--------CChHHHHHHHHHhhhCCCCC----cHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 038190 401 KFELDLTVFNCLVDGLCKS--------WRLRSAWELFKKLPRYGPEP----NVVTYTVMICGLCIEGGIEKAYDLLPDME 468 (531)
Q Consensus 401 ~~~~~~~~~~~l~~~~~~~--------g~~~~A~~~~~~~~~~g~~p----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 468 (531)
+...|..+..+|... |++++|...|++..+. .| +...|..+..+|...|++++|++.|++..
T Consensus 212 ----~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 285 (474)
T 4abn_A 212 ----DGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKV--DRKASSNPDLHLNRATLHKYEESYGEALEGFSQAA 285 (474)
T ss_dssp ----CHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH--CGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ----CHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 788999999999998 9999999999999985 44 78889999999999999999988887655
Q ss_pred HHHhhHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChhHHHhhHHHhh
Q 038190 469 EKIRECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLLPSFL 520 (531)
Q Consensus 469 ~~i~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 520 (531)
+. . +.+...+..+..++...|++++|.+..+++.
T Consensus 286 ~l-----------------~-p~~~~a~~~l~~~~~~lg~~~eAi~~~~~~~ 319 (474)
T 4abn_A 286 AL-----------------D-PAWPEPQQREQQLLEFLSRLTSLLESKGKTK 319 (474)
T ss_dssp HH-----------------C-TTCHHHHHHHHHHHHHHHHHHHHHHHTTTCC
T ss_pred Hh-----------------C-CCCHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 43 2 2345678889999999999999987666553
No 64
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.49 E-value=6.5e-13 Score=123.23 Aligned_cols=285 Identities=13% Similarity=0.034 Sum_probs=199.7
Q ss_pred hHHHHHHHHHccCCcchHHHHHHHHHHCCCCCC----hhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-CCCCCcHHh
Q 038190 124 SLNILMNCFCKMIGVSDAFVALGRILRKVFSPD----VVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCR-PNVIPNVIC 198 (531)
Q Consensus 124 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~~ 198 (531)
.+......+...|++++|...|+++++.... + ..++..+...+...|++++|+..+++....... .+......+
T Consensus 7 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 85 (338)
T 3ro2_A 7 ELALEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKA 85 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhCcc-cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHH
Confidence 4455667788999999999999999987533 3 357888999999999999999999887643111 100013567
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHhhCCC-CCC----HhhHHHHHHHHHhcCC--------------------hhhhhcc
Q 038190 199 YASIIDGLCKDGFVNKVRVLFLDMKGRGI-YPD----AFVYNSLIRVYCCAVN--------------------WEDAKGN 253 (531)
Q Consensus 199 ~~~l~~~~~~~~~~~~a~~~~~~m~~~g~-~p~----~~~~~~li~~~~~~~~--------------------~~~a~~~ 253 (531)
+..+...+...|++++|...+++..+... .++ ..++..+...+...|+ +++|...
T Consensus 86 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~ 165 (338)
T 3ro2_A 86 SGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDL 165 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHH
Confidence 88899999999999999999988764310 112 3467778888888998 6666665
Q ss_pred hHHHHHHHHHHHhCCCCCCccccCCHhhHHHHHHHHhcCCCHHHHHHHHHHHHhCC----C-CCCHHHHHHHHHHHHhcC
Q 038190 254 TSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRG----I-IPDVVVYSSLIDGYCLMG 328 (531)
Q Consensus 254 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~----~-~~~~~~~~~ll~~~~~~g 328 (531)
+++++.+...... ......++..+...+...|++++|...+++..+.. . .....++..+...|...|
T Consensus 166 ~~~a~~~~~~~~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g 237 (338)
T 3ro2_A 166 YEENLSLVTALGD--------RAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLG 237 (338)
T ss_dssp HHHHHHHHHHHTC--------HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhcCC--------HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcC
Confidence 5555555544321 12234578888889999999999999998876531 0 111336777888889999
Q ss_pred CHHHHHHHHHHHHhcCCC-CC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHhCCCC
Q 038190 329 RIDDARKLFVSIESEGCI-PD----TSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFE 403 (531)
Q Consensus 329 ~~~~a~~~~~~~~~~g~~-p~----~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 403 (531)
++++|...+++..+.... .+ ..++..+...|...|++++|...+++..+.. .... ...
T Consensus 238 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~---------------~~~~--~~~ 300 (338)
T 3ro2_A 238 EFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIA---------------QELK--DRI 300 (338)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH---------------HHHT--CHH
T ss_pred CHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH---------------HhcC--CcH
Confidence 999999999887643111 11 4566777888888999999988888765421 0000 000
Q ss_pred CCHHHHHHHHHHHHcCCChHHHHHHHHHhhh
Q 038190 404 LDLTVFNCLVDGLCKSWRLRSAWELFKKLPR 434 (531)
Q Consensus 404 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 434 (531)
....++..+...|...|++++|...+++..+
T Consensus 301 ~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 331 (338)
T 3ro2_A 301 GEGRACWSLGNAYTALGNHDQAMHFAEKHLE 331 (338)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 1234667777888888888888888887776
No 65
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.47 E-value=1e-12 Score=120.60 Aligned_cols=253 Identities=14% Similarity=0.016 Sum_probs=169.6
Q ss_pred cHHhHHHHHHHHHhcCChhHHHHHHHHHhhC-------CCCCCHhhHHHHHHHHHhcCChhhhhcchHHHHHHHHHHHhC
Q 038190 195 NVICYASIIDGLCKDGFVNKVRVLFLDMKGR-------GIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNG 267 (531)
Q Consensus 195 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~-------g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~a~~~~~~~~~~ 267 (531)
+..++..+...+...|++++|..+|+++.+. ........+..+...+...|++++|...+++++.+++.....
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 105 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK 105 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 4556777777788888888888888777652 122235567777788888888888888777777777766443
Q ss_pred CCCCCccccCCHhhHHHHHHHHhcCCCHHHHHHHHHHHHhC------CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 038190 268 NGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSR------GI-IPDVVVYSSLIDGYCLMGRIDDARKLFVSI 340 (531)
Q Consensus 268 ~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~------~~-~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 340 (531)
. .+....++..+...+...|++++|...++++.+. +. ......+..+...|...|++++|...++++
T Consensus 106 ~------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 179 (311)
T 3nf1_A 106 D------HPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRA 179 (311)
T ss_dssp T------CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred C------ChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3 2345677889999999999999999999988764 22 223566788889999999999999999998
Q ss_pred Hhc------CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-------CCCCcccHHHHHHHHHHHHhCCCCCCH
Q 038190 341 ESE------GCIP-DTSSYNTLINSYSKIEKVEEALSLYGEMISMG-------VRPDNSCILEAAELFRTLHNTKFELDL 406 (531)
Q Consensus 341 ~~~------g~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~-------~~~~~~~~~~a~~~~~~~~~~~~~~~~ 406 (531)
.+. +..| ...++..+...|...|++++|...++++.+.. ..+.... .....
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~---------------~~~~~ 244 (311)
T 3nf1_A 180 LEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKP---------------IWMHA 244 (311)
T ss_dssp HHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CC---------------HHHHH
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHH---------------HHHHH
Confidence 764 2122 34577888999999999999999999887521 1110000 00012
Q ss_pred HHHHHHHHHHHcCCChHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 038190 407 TVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEE 469 (531)
Q Consensus 407 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 469 (531)
..+..+...+...+.+.+|...++...... ..+..++..+..+|...|++++|+++|++..+
T Consensus 245 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 245 EEREECKGKQKDGTSFGEYGGWYKACKVDS-PTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp HHHHHC-------CCSCCCC---------C-HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHhcCchhhHHHHHHHHHHHhhcCCCC-chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 233344445555667777777777776531 23467788999999999999999999877654
No 66
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.46 E-value=1.5e-11 Score=116.44 Aligned_cols=306 Identities=11% Similarity=-0.089 Sum_probs=204.2
Q ss_pred HHccCCHHHHHHHHHHHHhC--CCCCCH--hhHHHHHHH--HHccCCcchHH-----------HHHHHHHHCCCCCC---
Q 038190 97 LAGKKYYVNFICLSERLNTI--GLLPDF--VSLNILMNC--FCKMIGVSDAF-----------VALGRILRKVFSPD--- 156 (531)
Q Consensus 97 ~~~~~~~~~a~~~~~~m~~~--g~~~~~--~~~~~li~~--~~~~g~~~~a~-----------~~~~~~~~~~~~~~--- 156 (531)
+.+.+++++|..+++++.+. .+..|. ..|..++.. ..-.++++.+. +.++.+.......+
T Consensus 22 ~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~~~~~~~~l 101 (383)
T 3ulq_A 22 YIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDKKQARLTGLL 101 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHHHHhcCCCchhHH
Confidence 34567888888888877543 122233 233333322 11223333333 56666544211111
Q ss_pred -hhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-CCCCCcHHhHHHHHHHHHhcCChhHHHHHHHHHhhC----CC--C
Q 038190 157 -VVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCR-PNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGR----GI--Y 228 (531)
Q Consensus 157 -~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~----g~--~ 228 (531)
...+......+...|++++|+..|++....... ++......+|..+...|...|++++|...+++..+. +- .
T Consensus 102 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~ 181 (383)
T 3ulq_A 102 EYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNI 181 (383)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchH
Confidence 111223566778899999999999998764211 110013467888999999999999999999887643 11 1
Q ss_pred CCHhhHHHHHHHHHhcCChhhhhcchHHHHHHHHHHHhCCCCCCccccCCHhhHHHHHHHHhcCCCHHHHHHHHHHHHhC
Q 038190 229 PDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSR 308 (531)
Q Consensus 229 p~~~~~~~li~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 308 (531)
....++..+...|...|++++|...+.+|+++...... ......++..+..+|...|++++|...+++..+.
T Consensus 182 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~--------~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~ 253 (383)
T 3ulq_A 182 RLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQ--------PQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAV 253 (383)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCC--------hHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 12356778888999999999999988888887765421 1223457888999999999999999999988772
Q ss_pred ----CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc----CCCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHH
Q 038190 309 ----GI-IPDVVVYSSLIDGYCLMGRIDDARKLFVSIESE----GCIPDTSSYNTLINSYSKIEK---VEEALSLYGEMI 376 (531)
Q Consensus 309 ----~~-~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~----g~~p~~~~~~~li~~~~~~~~---~~~a~~~~~~~~ 376 (531)
+. +....++..+...|.+.|++++|...+++..+. +.......+..+...|...|+ .++|+.++++.
T Consensus 254 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~- 332 (383)
T 3ulq_A 254 FEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK- 332 (383)
T ss_dssp HHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT-
T ss_pred HHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC-
Confidence 22 334677888999999999999999999987653 111122335667778888888 66666666554
Q ss_pred hCCCCCCcccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHhhh
Q 038190 377 SMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPR 434 (531)
Q Consensus 377 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 434 (531)
+..+ .....+..+...|...|++++|...|++..+
T Consensus 333 --~~~~---------------------~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 333 --MLYA---------------------DLEDFAIDVAKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp --TCHH---------------------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred --cCHH---------------------HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 2111 1345677889999999999999999998875
No 67
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.46 E-value=3.2e-12 Score=121.13 Aligned_cols=311 Identities=10% Similarity=-0.054 Sum_probs=211.9
Q ss_pred HHccCCcchHHHHHHHHHHCC--CCCC--hhhHHHHHHH--HHhcCChHHHH-----------HHHHHHHHcCCCCCCCC
Q 038190 132 FCKMIGVSDAFVALGRILRKV--FSPD--VVTLGCLIRG--LCMQGKFTEAS-----------GLFTKFVAFDCRPNVIP 194 (531)
Q Consensus 132 ~~~~g~~~~a~~~~~~~~~~~--~~~~--~~~~~~li~~--~~~~g~~~~a~-----------~~~~~~~~~~~~~~~~~ 194 (531)
+.+.+++++|..+++.+.+.- .+.+ ...|-.++.. ....++++.+. +.++.+.......+...
T Consensus 22 ~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~~~~~~~~l 101 (383)
T 3ulq_A 22 YIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDKKQARLTGLL 101 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHHHHhcCCCchhHH
Confidence 346799999999999986642 2223 3333333322 22234444444 66666654210000000
Q ss_pred cHHhHHHHHHHHHhcCChhHHHHHHHHHhhC----CCCC-CHhhHHHHHHHHHhcCChhhhhcchHHHHHHHHHHHhCCC
Q 038190 195 NVICYASIIDGLCKDGFVNKVRVLFLDMKGR----GIYP-DAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNG 269 (531)
Q Consensus 195 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~----g~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~ 269 (531)
....+......+...|++++|...|++..+. +-.+ ...++..+...|...|+++.|...+.+|++++......
T Consensus 102 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~-- 179 (383)
T 3ulq_A 102 EYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAY-- 179 (383)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTT--
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccc--
Confidence 0111223566788899999999999998764 1111 24577888899999999999999888888887653210
Q ss_pred CCCccccCCHhhHHHHHHHHhcCCCHHHHHHHHHHHHhCCCC-CC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-
Q 038190 270 ELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGII-PD----VVVYSSLIDGYCLMGRIDDARKLFVSIESE- 343 (531)
Q Consensus 270 ~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~- 343 (531)
......+++.+...|...|++++|...+++..+.... ++ ..++..+...|...|++++|...|++..+.
T Consensus 180 -----~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~ 254 (383)
T 3ulq_A 180 -----NIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVF 254 (383)
T ss_dssp -----HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred -----hHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 1123467888999999999999999999987753110 11 247888899999999999999999998762
Q ss_pred ---CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcC
Q 038190 344 ---GC-IPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKS 419 (531)
Q Consensus 344 ---g~-~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 419 (531)
+. .....++..+...|.+.|++++|...+++..+.. ... +.+.....+..+...|...
T Consensus 255 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~---------------~~~---~~~~~~~~~~~l~~~~~~~ 316 (383)
T 3ulq_A 255 EESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYS---------------QKA---GDVIYLSEFEFLKSLYLSG 316 (383)
T ss_dssp HHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH---------------HHH---TCHHHHHHHHHHHHHHTSS
T ss_pred HhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH---------------HHc---CCHHHHHHHHHHHHHHhCC
Confidence 22 2245678889999999999999999998876521 100 1011223467788999999
Q ss_pred CC---hHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 038190 420 WR---LRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEE 469 (531)
Q Consensus 420 g~---~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 469 (531)
|+ +++|..++++... .......+..+...|...|++++|.+.|++..+
T Consensus 317 ~~~~~~~~al~~~~~~~~--~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 317 PDEEAIQGFFDFLESKML--YADLEDFAIDVAKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp CCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHCcC--HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 99 7888888887632 122345677889999999999999998876543
No 68
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.46 E-value=8.1e-11 Score=107.62 Aligned_cols=218 Identities=10% Similarity=0.025 Sum_probs=146.2
Q ss_pred HHHHHHHHHHHhCCCCCCHhhHHHHHHHHH-------ccCCc-------chHHHHHHHHHH-CCCCCChhhHHHHHHHHH
Q 038190 104 VNFICLSERLNTIGLLPDFVSLNILMNCFC-------KMIGV-------SDAFVALGRILR-KVFSPDVVTLGCLIRGLC 168 (531)
Q Consensus 104 ~~a~~~~~~m~~~g~~~~~~~~~~li~~~~-------~~g~~-------~~a~~~~~~~~~-~~~~~~~~~~~~li~~~~ 168 (531)
++|+.+|++++... +.+...|..++..+. +.|++ ++|..+|++.++ .. +-+...|..++..+.
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~-p~~~~~~~~~~~~~~ 110 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLL-KKNMLLYFAYADYEE 110 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTT-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhC-cccHHHHHHHHHHHH
Confidence 56777777776653 456667777666654 34776 788888888887 33 235668888888888
Q ss_pred hcCChHHHHHHHHHHHHcCCCCCCCCcHH-hHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHH-hcCC
Q 038190 169 MQGKFTEASGLFTKFVAFDCRPNVIPNVI-CYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYC-CAVN 246 (531)
Q Consensus 169 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~-~~~~ 246 (531)
..|++++|..+|++.... .|. +.. +|..++..+.+.|++++|..+|++..+... .+...|........ ..|+
T Consensus 111 ~~~~~~~A~~~~~~al~~--~p~---~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~~a~~~~~~~~~ 184 (308)
T 2ond_A 111 SRMKYEKVHSIYNRLLAI--EDI---DPTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR-TRHHVYVTAALMEYYCSKD 184 (308)
T ss_dssp HTTCHHHHHHHHHHHHTS--SSS---CTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTT-CCTHHHHHHHHHHHHTSCC
T ss_pred hcCCHHHHHHHHHHHHhc--ccc---CccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHcCC
Confidence 888888888888888874 332 333 788888888888888888888888887532 23333332222211 2466
Q ss_pred hhhhhcchHHHHHHHHHHHhCCCCCCccccCCHhhHHHHHHHHhcCCCHHHHHHHHHHHHhCC-CCC--CHHHHHHHHHH
Q 038190 247 WEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRG-IIP--DVVVYSSLIDG 323 (531)
Q Consensus 247 ~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~--~~~~~~~ll~~ 323 (531)
.++|.. +|+...... +.+...|..++..+.+.|++++|..+|+...... +.| ....|..++..
T Consensus 185 ~~~A~~-------~~~~al~~~-------p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~ 250 (308)
T 2ond_A 185 KSVAFK-------IFELGLKKY-------GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAF 250 (308)
T ss_dssp HHHHHH-------HHHHHHHHH-------TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHH
T ss_pred HHHHHH-------HHHHHHHhC-------CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHH
Confidence 666666 444433322 2355667777777777788888888887777752 343 35567777777
Q ss_pred HHhcCCHHHHHHHHHHHHhc
Q 038190 324 YCLMGRIDDARKLFVSIESE 343 (531)
Q Consensus 324 ~~~~g~~~~a~~~~~~~~~~ 343 (531)
+.+.|+.+.|..+++++.+.
T Consensus 251 ~~~~g~~~~a~~~~~~a~~~ 270 (308)
T 2ond_A 251 ESNIGDLASILKVEKRRFTA 270 (308)
T ss_dssp HHHHSCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHH
Confidence 77777777777777777765
No 69
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.44 E-value=2.4e-10 Score=104.46 Aligned_cols=224 Identities=11% Similarity=0.017 Sum_probs=168.7
Q ss_pred hHHHHHHHHHhhCCCCCCHhhHHHHHHHHH-------hcCChhhhhcchHHHHHHHHHHHhC-CCCCCccccCCHhhHHH
Q 038190 213 NKVRVLFLDMKGRGIYPDAFVYNSLIRVYC-------CAVNWEDAKGNTSAALELHEEFVNG-NGELGVICHPDVLSYCS 284 (531)
Q Consensus 213 ~~a~~~~~~m~~~g~~p~~~~~~~li~~~~-------~~~~~~~a~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 284 (531)
++|..+|++..... +-+...|..+...+. ..|+++......++|+.+|++.... . +.+...|..
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~-------p~~~~~~~~ 104 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLL-------KKNMLLYFA 104 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTT-------TTCHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhC-------cccHHHHHH
Confidence 56777777776642 225666666666554 3466633333345555688888773 3 345668999
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHhCCCCCC-HH-HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH-h
Q 038190 285 IINSLCKDVLVDKAKELFLDMKSRGIIPD-VV-VYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYS-K 361 (531)
Q Consensus 285 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~-~ 361 (531)
++..+...|++++|..+|+++.+. .|+ .. .|..+...+.+.|++++|..+|++..+.... +...|........ .
T Consensus 105 ~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~~a~~~~~~ 181 (308)
T 2ond_A 105 YADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDART-RHHVYVTAALMEYYC 181 (308)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTC-CTHHHHHHHHHHHHT
T ss_pred HHHHHHhcCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHH
Confidence 999999999999999999999985 443 33 7999999999999999999999999987542 4445544333322 3
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHhhhCC-CCC-
Q 038190 362 IEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYG-PEP- 439 (531)
Q Consensus 362 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g-~~p- 439 (531)
.|++++|..+|++..+. .|+ +...|..++..+.+.|++++|..+|++..+.. +.|
T Consensus 182 ~~~~~~A~~~~~~al~~--~p~---------------------~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~ 238 (308)
T 2ond_A 182 SKDKSVAFKIFELGLKK--YGD---------------------IPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPE 238 (308)
T ss_dssp SCCHHHHHHHHHHHHHH--HTT---------------------CHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGG
T ss_pred cCCHHHHHHHHHHHHHh--CCC---------------------cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHH
Confidence 69999999999988763 232 78899999999999999999999999999852 455
Q ss_pred -cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 038190 440 -NVVTYTVMICGLCIEGGIEKAYDLLPDMEEK 470 (531)
Q Consensus 440 -~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 470 (531)
....|..++..+.+.|+.++|..+++++.+.
T Consensus 239 ~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~ 270 (308)
T 2ond_A 239 KSGEIWARFLAFESNIGDLASILKVEKRRFTA 270 (308)
T ss_dssp GCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3668888999999999999998888776654
No 70
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.43 E-value=1.4e-10 Score=109.37 Aligned_cols=282 Identities=11% Similarity=-0.028 Sum_probs=188.5
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCCCCCC--cHHhHHHHHHHHHhcCChhHHHHHHHHHhhC----CCCC-CHhhH
Q 038190 162 CLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIP--NVICYASIIDGLCKDGFVNKVRVLFLDMKGR----GIYP-DAFVY 234 (531)
Q Consensus 162 ~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~----g~~p-~~~~~ 234 (531)
.....+...|++++|...+++..... +...+ -..+++.+...+...|++++|...+++.... |... ...++
T Consensus 19 ~~a~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 96 (373)
T 1hz4_A 19 LRAQVAINDGNPDEAERLAKLALEEL--PPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSL 96 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTC--CTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHcC--CCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 34455667788888888888877643 21101 1124566667777888888888888776542 1110 12234
Q ss_pred HHHHHHHHhcCChhhhhcchHHHHHHHHHHHhCCCCCCccccCCHhhHHHHHHHHhcCCCHHHHHHHHHHHHhCCCC---
Q 038190 235 NSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGII--- 311 (531)
Q Consensus 235 ~~li~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--- 311 (531)
..+...+...|++++|...+++++++........ .+.....+..+...+...|++++|...+++..+....
T Consensus 97 ~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 170 (373)
T 1hz4_A 97 IQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQ------LPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQP 170 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTT------STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCG
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcccc------CcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCc
Confidence 5667778889999999997777777665432111 0112445677888899999999999999988764221
Q ss_pred -CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCH-HHHH-----HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCc
Q 038190 312 -PDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDT-SSYN-----TLINSYSKIEKVEEALSLYGEMISMGVRPDN 384 (531)
Q Consensus 312 -~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~-~~~~-----~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 384 (531)
....++..+...+...|++++|...+++.......++. ..+. ..+..+...|++++|...+++.......+.
T Consensus 171 ~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~- 249 (373)
T 1hz4_A 171 QQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANN- 249 (373)
T ss_dssp GGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTC-
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcc-
Confidence 12456777888899999999999999998754222111 1222 233457789999999999988754321110
Q ss_pred ccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHhhhC----CCCCcH-HHHHHHHHHHHHcCCHHH
Q 038190 385 SCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRY----GPEPNV-VTYTVMICGLCIEGGIEK 459 (531)
Q Consensus 385 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----g~~p~~-~~~~~l~~~~~~~g~~~~ 459 (531)
......+..+...+...|++++|...+++.... |..++. ..+..+..++...|++++
T Consensus 250 ------------------~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 311 (373)
T 1hz4_A 250 ------------------HFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSD 311 (373)
T ss_dssp ------------------GGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred ------------------hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHH
Confidence 112335678889999999999999999988652 222222 366677788899999999
Q ss_pred HHHHHHHHHHH
Q 038190 460 AYDLLPDMEEK 470 (531)
Q Consensus 460 A~~~~~~~~~~ 470 (531)
|...+++....
T Consensus 312 A~~~l~~al~~ 322 (373)
T 1hz4_A 312 AQRVLLDALKL 322 (373)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99988776543
No 71
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.42 E-value=5.3e-13 Score=122.47 Aligned_cols=253 Identities=14% Similarity=0.028 Sum_probs=134.3
Q ss_pred ChhhHHHHHHHHHccCCHHHHHHHHHHHHhC-------CCCCCHhhHHHHHHHHHccCCcchHHHHHHHHHHCCCCCChh
Q 038190 86 FMPSFNSLLGALAGKKYYVNFICLSERLNTI-------GLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVV 158 (531)
Q Consensus 86 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-------g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 158 (531)
+..+|..+...+...|++++|+.+++++.+. ..+....++..+...+...|++++|...++++++..
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~------ 99 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIR------ 99 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH------
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH------
Confidence 3445666666666677777777766666542 111223344444444445555555555444443320
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCCCcHHhHHHHHHHHHhcCChhHHHHHHHHHhhC------CC-CCCH
Q 038190 159 TLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGR------GI-YPDA 231 (531)
Q Consensus 159 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~------g~-~p~~ 231 (531)
+.... +..+ ....++..+...|...|++++|...|++..+. +. ....
T Consensus 100 ----------------------~~~~~-~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 153 (311)
T 3nf1_A 100 ----------------------EKTLG-KDHP---AVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVA 153 (311)
T ss_dssp ----------------------HHHHC-TTCH---HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHH
T ss_pred ----------------------HHHhC-CCCh---HHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHH
Confidence 00000 0011 13344555555555556666655555555432 11 1123
Q ss_pred hhHHHHHHHHHhcCChhhhhcchHHHHHHHHHHHhCCCCCCccccCCHhhHHHHHHHHhcCCCHHHHHHHHHHHHhC---
Q 038190 232 FVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSR--- 308 (531)
Q Consensus 232 ~~~~~li~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--- 308 (531)
..+..+...+...|++++|...++++++++....... .+....++..+..++...|++++|...++++.+.
T Consensus 154 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 227 (311)
T 3nf1_A 154 KQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPD------DPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHE 227 (311)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTT------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 4456666677777777777776666665554432222 1233557888999999999999999999988763
Q ss_pred ----CCCCCHHH-------HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 038190 309 ----GIIPDVVV-------YSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMIS 377 (531)
Q Consensus 309 ----~~~~~~~~-------~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 377 (531)
...+.... +..+...+...+.+.++...+....... .....++..+..+|.+.|++++|..+|++..+
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 228 REFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDS-PTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp HHHC------CCHHHHHHHHHHC-------CCSCCCC---------C-HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred hcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCC-chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 11122111 2222223334445555555666655432 12456788899999999999999999998765
No 72
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.42 E-value=6.7e-11 Score=99.11 Aligned_cols=164 Identities=13% Similarity=0.031 Sum_probs=95.1
Q ss_pred CHhhHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 038190 278 DVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLIN 357 (531)
Q Consensus 278 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~ 357 (531)
+...|..+...|...|++++|.+.|++..+.. +-+..++..+..+|.+.|++++|...+......... +...+..+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTT-SAEAYYILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCch-hHHHHHHHHH
Confidence 44556666666666666666666666665542 224555666666666666666666666666554332 4445555555
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHhhhCCC
Q 038190 358 SYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGP 437 (531)
Q Consensus 358 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~ 437 (531)
.+...++++.|...+.+..+.. |+ +...+..+..+|...|++++|++.|++..+..
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~~--~~---------------------~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~- 137 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIALN--TV---------------------YADAYYKLGLVYDSMGEHDKAIEAYEKTISIK- 137 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC--TT---------------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred HHHHcCCHHHHHHHHHHHHHhC--cc---------------------chHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-
Confidence 6666666666666666555421 21 45556666666666666666666666665532
Q ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 038190 438 EPNVVTYTVMICGLCIEGGIEKAYDLLPDM 467 (531)
Q Consensus 438 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 467 (531)
+.+..+|..+..+|.+.|++++|++.|++.
T Consensus 138 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 167 (184)
T 3vtx_A 138 PGFIRAYQSIGLAYEGKGLRDEAVKYFKKA 167 (184)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred chhhhHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 224555666666666666666665555443
No 73
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.41 E-value=4.9e-12 Score=122.97 Aligned_cols=212 Identities=9% Similarity=-0.093 Sum_probs=134.3
Q ss_pred HHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCCH-HHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCcchHHHHHH
Q 038190 68 LNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYY-VNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALG 146 (531)
Q Consensus 68 ~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~-~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 146 (531)
+++|+..++......+ .+...|..+...+...|++ ++|++.|++..+.. +.+..+|..+..+|...|++++|...|+
T Consensus 84 ~~~al~~l~~~~~~~~-~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 84 MEKTLQQMEEVLGSAQ-VEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHTTCC-CCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCc-hhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 5555566665544333 2566667777777777777 77777777776654 3346677777777777777777777777
Q ss_pred HHHHCCCCCChhhHHHHHHHHHhc---------CChHHHHHHHHHHHHcCCCCCCCCcHHhHHHHHHHHHhc--------
Q 038190 147 RILRKVFSPDVVTLGCLIRGLCMQ---------GKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKD-------- 209 (531)
Q Consensus 147 ~~~~~~~~~~~~~~~~li~~~~~~---------g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-------- 209 (531)
++++.. |+..++..+..+|... |++++|+..|++.... .|+ +...|..+..+|...
T Consensus 162 ~al~~~--p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~---~~~~~~~lg~~~~~~~~~~~~~~ 234 (474)
T 4abn_A 162 GALTHC--KNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQM--DVL---DGRSWYILGNAYLSLYFNTGQNP 234 (474)
T ss_dssp HHHTTC--CCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHH--CTT---CHHHHHHHHHHHHHHHHHTTCCH
T ss_pred HHHhhC--CCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHh--CCC---CHHHHHHHHHHHHHHHHhhcccc
Confidence 777663 4456666677777777 7777777777777665 332 566677777777766
Q ss_pred CChhHHHHHHHHHhhCCCC--CCHhhHHHHHHHHHhcCChhhhhcchHHHHHHHHHHHhCCCCCCccccCCHhhHHHHHH
Q 038190 210 GFVNKVRVLFLDMKGRGIY--PDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIIN 287 (531)
Q Consensus 210 ~~~~~a~~~~~~m~~~g~~--p~~~~~~~li~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~ 287 (531)
|++++|...|++..+.... -+...|..+..+|...|++++|.. .|+...... +.+...+..+..
T Consensus 235 g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~-------~~~~al~l~-------p~~~~a~~~l~~ 300 (474)
T 4abn_A 235 KISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALE-------GFSQAAALD-------PAWPEPQQREQQ 300 (474)
T ss_dssp HHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHH-------HHHHHHHHC-------TTCHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHH-------HHHHHHHhC-------CCCHHHHHHHHH
Confidence 7777777777776654210 255666667777777777766666 443333322 233445666666
Q ss_pred HHhcCCCHHHHHHHH
Q 038190 288 SLCKDVLVDKAKELF 302 (531)
Q Consensus 288 ~~~~~~~~~~a~~~~ 302 (531)
++...|++++|.+.+
T Consensus 301 ~~~~lg~~~eAi~~~ 315 (474)
T 4abn_A 301 LLEFLSRLTSLLESK 315 (474)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHh
Confidence 666666666666544
No 74
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.41 E-value=7.7e-11 Score=98.76 Aligned_cols=150 Identities=11% Similarity=0.074 Sum_probs=132.7
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHH
Q 038190 313 DVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAE 392 (531)
Q Consensus 313 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~a~~ 392 (531)
++.+|..+...|.+.|++++|...|++.++..+. +...|..+..+|.+.|++++|...+....... |+
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~--~~--------- 71 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPN-NVETLLKLGKTYMDIGLPNDAIESLKKFVVLD--TT--------- 71 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CC---------
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--ch---------
Confidence 6788999999999999999999999999988654 78889999999999999999999999987743 22
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--
Q 038190 393 LFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK-- 470 (531)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-- 470 (531)
+...+..+...+...++++.|...+.+..+.. +-+...+..+..+|...|++++|++.|++..+.
T Consensus 72 ------------~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p 138 (184)
T 3vtx_A 72 ------------SAEAYYILGSANFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKP 138 (184)
T ss_dssp ------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred ------------hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcc
Confidence 67788899999999999999999999998752 336788899999999999999999999999886
Q ss_pred ---------------HhhHHHHHHHHHHHHHc
Q 038190 471 ---------------IRECLKAIELLHKMAKR 487 (531)
Q Consensus 471 ---------------i~~~~~a~~~~~~~~~~ 487 (531)
.|++++|+..|++.++.
T Consensus 139 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 170 (184)
T 3vtx_A 139 GFIRAYQSIGLAYEGKGLRDEAVKYFKKALEK 170 (184)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred hhhhHHHHHHHHHHHCCCHHHHHHHHHHHHhC
Confidence 39999999999999864
No 75
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.40 E-value=2.4e-10 Score=107.74 Aligned_cols=283 Identities=12% Similarity=-0.017 Sum_probs=192.5
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHh----hHHHHHHHHHhcCChhhhhcchHHHHHHHHHHHhCCCCCCcc
Q 038190 199 YASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAF----VYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVI 274 (531)
Q Consensus 199 ~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~----~~~~li~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~ 274 (531)
+......+...|++++|...+++........+.. .+..+...+...|++++|...+++++.+.... +.
T Consensus 17 ~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~---~~----- 88 (373)
T 1hz4_A 17 NALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQH---DV----- 88 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT---TC-----
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhc---Cc-----
Confidence 3445556778999999999999987653222222 45566677888999999999777777765542 10
Q ss_pred ccCCHhhHHHHHHHHhcCCCHHHHHHHHHHHHhC----CCC--C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 038190 275 CHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSR----GII--P-DVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIP 347 (531)
Q Consensus 275 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~--~-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p 347 (531)
......++..+...+...|++++|...+++..+. +.. | ....+..+...+...|++++|...+++........
T Consensus 89 ~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 168 (373)
T 1hz4_A 89 WHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSY 168 (373)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTS
T ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcc
Confidence 1112344667888899999999999999887653 222 2 23456677888999999999999999987653221
Q ss_pred ----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHhCCCCCCHHHH--HHHHHHHHcCCC
Q 038190 348 ----DTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVF--NCLVDGLCKSWR 421 (531)
Q Consensus 348 ----~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~g~ 421 (531)
....+..+...+...|++++|...+++.......+ +..+..... ...+..+...|+
T Consensus 169 ~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~g~ 230 (373)
T 1hz4_A 169 QPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNG------------------KYHSDWISNANKVRVIYWQMTGD 230 (373)
T ss_dssp CGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTS------------------CCCHHHHHHHHHHHHHHHHHTTC
T ss_pred CcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc------------------CcchhHHHHHHHHHHHHHHHCCC
Confidence 23567778888999999999999999876531111 011011111 134455789999
Q ss_pred hHHHHHHHHHhhhCCCCC---cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCCH-HHHH
Q 038190 422 LRSAWELFKKLPRYGPEP---NVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECLKAIELLHKMAKRYVKPDE-ITVS 497 (531)
Q Consensus 422 ~~~A~~~~~~~~~~g~~p---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~i~~~~~a~~~~~~~~~~~~~~~~-~~~~ 497 (531)
+++|..++++.......+ ....+..+...+...|++++|.+.+++.... . ...+..++. ..+.
T Consensus 231 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~----------~---~~~~~~~~~~~~~~ 297 (373)
T 1hz4_A 231 KAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNEN----------A---RSLRLMSDLNRNLL 297 (373)
T ss_dssp HHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------H---HHTTCHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH----------H---HhCcchhhHHHHHH
Confidence 999999999988643221 1235667788899999999999988765432 1 122322222 2566
Q ss_pred HHHHHHhccCChhHHHhhHHHhh
Q 038190 498 ILEELLNKDENCHECMNLLPSFL 520 (531)
Q Consensus 498 ~l~~~~~~~g~~~~a~~~~~~~~ 520 (531)
.+..++...|+.++|...+++..
T Consensus 298 ~la~~~~~~g~~~~A~~~l~~al 320 (373)
T 1hz4_A 298 LLNQLYWQAGRKSDAQRVLLDAL 320 (373)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHH
Confidence 67777888888888887777643
No 76
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.39 E-value=4.6e-11 Score=112.85 Aligned_cols=241 Identities=10% Similarity=-0.085 Sum_probs=174.0
Q ss_pred HHHHHHHhcCChhHHHHHHHHHhhCCC-CCC----HhhHHHHHHHHHhcCChhhhhcchHHHHHHHHHHHhCCCCCCccc
Q 038190 201 SIIDGLCKDGFVNKVRVLFLDMKGRGI-YPD----AFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVIC 275 (531)
Q Consensus 201 ~l~~~~~~~~~~~~a~~~~~~m~~~g~-~p~----~~~~~~li~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~ 275 (531)
.....+...|++++|...|++..+.-. .++ ..++..+...|...|+++.|...+.+|++++.......
T Consensus 106 ~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~------- 178 (378)
T 3q15_A 106 FRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYS------- 178 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCH-------
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCch-------
Confidence 345556778888888888888765311 112 34567777888888999988888888777765422100
Q ss_pred cCCHhhHHHHHHHHhcCCCHHHHHHHHHHHHhC----CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-----cCC
Q 038190 276 HPDVLSYCSIINSLCKDVLVDKAKELFLDMKSR----GII-PDVVVYSSLIDGYCLMGRIDDARKLFVSIES-----EGC 345 (531)
Q Consensus 276 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-----~g~ 345 (531)
.....+++.+..+|...|++++|.+.|++..+. +.. ....++..+...|...|++++|...|++..+ ...
T Consensus 179 ~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~ 258 (378)
T 3q15_A 179 IRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPD 258 (378)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGG
T ss_pred hhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCCh
Confidence 113557888999999999999999999887753 111 1235678888899999999999999999876 332
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCC---h
Q 038190 346 IPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWR---L 422 (531)
Q Consensus 346 ~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~ 422 (531)
. ...++..+...|.+.|++++|...+++..+..... +.+.....+..+...|...|+ +
T Consensus 259 ~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~------------------~~~~~~~~~~~l~~ly~~~~~~~~~ 319 (378)
T 3q15_A 259 L-LPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITAR------------------SHKFYKELFLFLQAVYKETVDERKI 319 (378)
T ss_dssp G-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTT------------------CCSCHHHHHHHHHHHHSSSCCHHHH
T ss_pred h-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHc------------------CCHHHHHHHHHHHHHHhCCCcHHHH
Confidence 2 36778888999999999999999999987632211 111234456777778888888 8
Q ss_pred HHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 038190 423 RSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEE 469 (531)
Q Consensus 423 ~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 469 (531)
.+|..++++... .......+..+...|...|++++|.+.|++..+
T Consensus 320 ~~al~~~~~~~~--~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 320 HDLLSYFEKKNL--HAYIEACARSAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHHHHHHTTC--HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCC--hhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 888888877432 112344667888999999999999999976543
No 77
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.37 E-value=1.2e-08 Score=102.07 Aligned_cols=390 Identities=13% Similarity=0.035 Sum_probs=257.8
Q ss_pred CCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCC---HHHHHHHHHHHHhCC-CCCCHhhHHHHHHHHHccCCc---
Q 038190 66 VELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKY---YVNFICLSERLNTIG-LLPDFVSLNILMNCFCKMIGV--- 138 (531)
Q Consensus 66 g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~---~~~a~~~~~~m~~~g-~~~~~~~~~~li~~~~~~g~~--- 138 (531)
+.++.|..+|+++...-|. +...|..-+..-.+.++ ++.+..+|++.+... .+|+...|..-+....+.++.
T Consensus 80 ~~~~~aR~vyEraL~~fP~-~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~ 158 (679)
T 4e6h_A 80 KQWKQVYETFDKLHDRFPL-MANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDLSLWLSYITYVRKKNDIITG 158 (679)
T ss_dssp TCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTT
T ss_pred CcHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcccccc
Confidence 4899999999999997665 77889999998888888 999999999998864 238888898888776665554
Q ss_pred -----chHHHHHHHHHH-CCC-CC-ChhhHHHHHHHHHh---------cCChHHHHHHHHHHHHcCCCCCCCCcHHhHHH
Q 038190 139 -----SDAFVALGRILR-KVF-SP-DVVTLGCLIRGLCM---------QGKFTEASGLFTKFVAFDCRPNVIPNVICYAS 201 (531)
Q Consensus 139 -----~~a~~~~~~~~~-~~~-~~-~~~~~~~li~~~~~---------~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (531)
+.+.++|+.++. .|. .+ +...|...+..... .++++.+..+|++.+. .|.. .-..+|..
T Consensus 159 ~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~raL~---iP~~-~~~~~w~~ 234 (679)
T 4e6h_A 159 GEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLLC---QPMD-CLESMWQR 234 (679)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHTT---SCCS-SHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHHHh---CccH-HHHHHHHH
Confidence 334477877665 455 44 34688887765442 3457788899999885 2321 12233432
Q ss_pred HHHHHHh-------------cCChhHHHHHHHHHhh--CCCC---CC--------------------HhhHHHHHHHHHh
Q 038190 202 IIDGLCK-------------DGFVNKVRVLFLDMKG--RGIY---PD--------------------AFVYNSLIRVYCC 243 (531)
Q Consensus 202 l~~~~~~-------------~~~~~~a~~~~~~m~~--~g~~---p~--------------------~~~~~~li~~~~~ 243 (531)
....-.. ..+++.|...+.++.. .++. |. ...|...+..--.
T Consensus 235 Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~ 314 (679)
T 4e6h_A 235 YTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESD 314 (679)
T ss_dssp HHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhccCCCCchhHHHHHHHHHHHHHHHHh
Confidence 2221111 1123344455544321 1111 10 1233333332222
Q ss_pred cCC-hhhhhcchHHHHHHHHHHHhCCCCCCccccCCHhhHHHHHHHHhcCCCHHHHH-HHHHHHHhCCCCCCHHHHHHHH
Q 038190 244 AVN-WEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAK-ELFLDMKSRGIIPDVVVYSSLI 321 (531)
Q Consensus 244 ~~~-~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~ll 321 (531)
.+. .++. ........+|++..... +-....|...+..+...|+.++|. .+|+..... .+.+...|...+
T Consensus 315 ~~~~l~~~-~~~~Rv~~~Ye~aL~~~-------p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a 385 (679)
T 4e6h_A 315 NKLELSDD-LHKARMTYVYMQAAQHV-------CFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVLAFSLS 385 (679)
T ss_dssp CTTCCCHH-HHHHHHHHHHHHHHHHT-------TTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHHHHHHH
T ss_pred CCccccch-hhHHHHHHHHHHHHHHc-------CCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHHHHHHH
Confidence 110 1110 11233444666666543 456777888888888889988996 999998874 344666777888
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCC---------CCC------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-C
Q 038190 322 DGYCLMGRIDDARKLFVSIESEGC---------IPD------------TSSYNTLINSYSKIEKVEEALSLYGEMISM-G 379 (531)
Q Consensus 322 ~~~~~~g~~~~a~~~~~~~~~~g~---------~p~------------~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-~ 379 (531)
...-+.|+++.|.++|+.+.+... .|+ ...|...+....+.|..+.|..+|.+..+. +
T Consensus 386 ~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~ 465 (679)
T 4e6h_A 386 EQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKK 465 (679)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGG
T ss_pred HHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC
Confidence 888899999999999999876410 132 236777788888889999999999999875 2
Q ss_pred CCCC-------------cccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHhhhCCCCC--cHHHH
Q 038190 380 VRPD-------------NSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEP--NVVTY 444 (531)
Q Consensus 380 ~~~~-------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p--~~~~~ 444 (531)
.... .++.+.|..+|+...+. ++-+...|...++.....|+.+.|..+|++.+.....+ ....|
T Consensus 466 ~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw 544 (679)
T 4e6h_A 466 LVTPDIYLENAYIEYHISKDTKTACKVLELGLKY-FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIF 544 (679)
T ss_dssp GSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHH
T ss_pred CCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 2211 23467888888887765 33466777788888888888888999998888753211 34567
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHH
Q 038190 445 TVMICGLCIEGGIEKAYDLLPDMEEK 470 (531)
Q Consensus 445 ~~l~~~~~~~g~~~~A~~~~~~~~~~ 470 (531)
...+.--.+.|+.+.+.++.+++.+.
T Consensus 545 ~~~~~fE~~~G~~~~~~~v~~R~~~~ 570 (679)
T 4e6h_A 545 QKVIFFESKVGSLNSVRTLEKRFFEK 570 (679)
T ss_dssp HHHHHHHHHTCCSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 77777777888888888888887765
No 78
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.36 E-value=2.4e-10 Score=107.88 Aligned_cols=317 Identities=13% Similarity=-0.043 Sum_probs=213.1
Q ss_pred CChhhHHHHHHHH--HccCCHHHHHHHHHHHHhC--CCCCCH--hhHHHHHHH--HHccCCcchHH---------HHHHH
Q 038190 85 PFMPSFNSLLGAL--AGKKYYVNFICLSERLNTI--GLLPDF--VSLNILMNC--FCKMIGVSDAF---------VALGR 147 (531)
Q Consensus 85 ~~~~~~~~li~~~--~~~~~~~~a~~~~~~m~~~--g~~~~~--~~~~~li~~--~~~~g~~~~a~---------~~~~~ 147 (531)
|+...-+.|-..| ...+++++|..+++++.+. .+..|. ..|-.++.. ..-.+.+..+. ..++.
T Consensus 8 ~~~~v~~~l~~wy~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~ 87 (378)
T 3q15_A 8 PSSRVGVKINEWYKMIRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELLET 87 (378)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHGGGBCCCHHHHHHHHHHHHHHHHHHHTCCC--------CHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcCcccccccccchHHHHHH
Confidence 3444444555555 6788899999988887542 122232 233444332 11223444444 66666
Q ss_pred HHHCCCCCCh----hhHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-CCCCCcHHhHHHHHHHHHhcCChhHHHHHHHHH
Q 038190 148 ILRKVFSPDV----VTLGCLIRGLCMQGKFTEASGLFTKFVAFDCR-PNVIPNVICYASIIDGLCKDGFVNKVRVLFLDM 222 (531)
Q Consensus 148 ~~~~~~~~~~----~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m 222 (531)
+.......+. ..+......+...|++++|+..|++....... ++......++..+...|...|+++.|...+++.
T Consensus 88 i~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~a 167 (378)
T 3q15_A 88 IETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQA 167 (378)
T ss_dssp HHGGGHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HhccCCCCccHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 5432211111 12333455677899999999999998764221 111113557888999999999999999999887
Q ss_pred hhC----CC-CC-CHhhHHHHHHHHHhcCChhhhhcchHHHHHHHHHHHhCCCCCCccccCCHhhHHHHHHHHhcCCCHH
Q 038190 223 KGR----GI-YP-DAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVD 296 (531)
Q Consensus 223 ~~~----g~-~p-~~~~~~~li~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 296 (531)
.+. +- .+ ...+++.+...|...|++++|...+.+|+++.+.... ......++..+..+|...|+++
T Consensus 168 l~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~--------~~~~~~~~~~lg~~y~~~~~~~ 239 (378)
T 3q15_A 168 LDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQN--------DRFIAISLLNIANSYDRSGDDQ 239 (378)
T ss_dssp HHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCC--------HHHHHHHHHHHHHHHHHCCCHH
Confidence 642 11 11 2456778888999999999999988888887755311 1223457888999999999999
Q ss_pred HHHHHHHHHHh-----CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC----CCCHHHHHHHHHHHHhcCC---
Q 038190 297 KAKELFLDMKS-----RGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGC----IPDTSSYNTLINSYSKIEK--- 364 (531)
Q Consensus 297 ~a~~~~~~~~~-----~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~----~p~~~~~~~li~~~~~~~~--- 364 (531)
+|...+++..+ .. +....++..+...|.+.|++++|...+++..+... ......+..+...|...++
T Consensus 240 ~A~~~~~~al~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~ 318 (378)
T 3q15_A 240 MAVEHFQKAAKVSREKVP-DLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERK 318 (378)
T ss_dssp HHHHHHHHHHHHHHHHCG-GGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHH
T ss_pred HHHHHHHHHHHHHHhhCC-hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHH
Confidence 99999999887 42 22367788899999999999999999999876422 1123455666667777777
Q ss_pred HHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHhhh
Q 038190 365 VEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPR 434 (531)
Q Consensus 365 ~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 434 (531)
..+|+..+++. +..+ .....+..+...|...|++++|...|++..+
T Consensus 319 ~~~al~~~~~~---~~~~---------------------~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 319 IHDLLSYFEKK---NLHA---------------------YIEACARSAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHHHHHHHT---TCHH---------------------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhC---CChh---------------------HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 66666666552 2111 1334677899999999999999999998875
No 79
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.35 E-value=1.1e-11 Score=111.73 Aligned_cols=207 Identities=16% Similarity=0.008 Sum_probs=155.9
Q ss_pred HHhcCChhhhhcchHHHHHHHHHHHhCCCCCCccccCCHhhHHHHHHHHhcCCCHHHHHHHHHHHHhC------CC-CCC
Q 038190 241 YCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSR------GI-IPD 313 (531)
Q Consensus 241 ~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~------~~-~~~ 313 (531)
....|++++|...+++|++++......+ .+....++..+...+...|++++|...++++.+. +- +..
T Consensus 11 ~~~~~~~~~A~~~~~~al~~~~~~~~~~------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 84 (283)
T 3edt_B 11 SSGLVPRGSAVPLCKQALEDLEKTSGHD------HPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAV 84 (283)
T ss_dssp --CCSCSSSHHHHHHHHHHHHHHHHCSS------SHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHH
T ss_pred cCCCCCHHHHHHHHHHHHHHHHHhcCCC------CHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHH
Confidence 3567899999999999999999887655 3445778899999999999999999999988764 21 224
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-----CC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCccc
Q 038190 314 VVVYSSLIDGYCLMGRIDDARKLFVSIESE-----GC--IPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSC 386 (531)
Q Consensus 314 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-----g~--~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 386 (531)
..++..+...|...|++++|...|++..+. +. ......+..+...|...|++++|...+++..+.
T Consensus 85 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-------- 156 (283)
T 3edt_B 85 AATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEI-------- 156 (283)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH--------
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--------
Confidence 567888999999999999999999998764 11 123567888899999999999999999887653
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHhhhC-------------------------------
Q 038190 387 ILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRY------------------------------- 435 (531)
Q Consensus 387 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------------------------------- 435 (531)
++.......+....++..+..+|...|++++|..+++++.+.
T Consensus 157 -------~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (283)
T 3edt_B 157 -------YATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRR 229 (283)
T ss_dssp -------HHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCC
T ss_pred -------HHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchh
Confidence 111100111124567889999999999999999999988752
Q ss_pred -----------------CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 038190 436 -----------------GPEPNVVTYTVMICGLCIEGGIEKAYDLLPDME 468 (531)
Q Consensus 436 -----------------g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 468 (531)
.......++..+..+|...|++++|+++|++..
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 279 (283)
T 3edt_B 230 DSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCAS 279 (283)
T ss_dssp C------------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 001123456777888888888888888777654
No 80
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.32 E-value=6.4e-11 Score=119.73 Aligned_cols=175 Identities=10% Similarity=0.014 Sum_probs=150.9
Q ss_pred ChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCcchHHHHHHHHHHCCCCCChhhHHHHHH
Q 038190 86 FMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIR 165 (531)
Q Consensus 86 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 165 (531)
+..+|+.|...+.+.|++++|++.|++.++.. +-+..+|..+..+|.+.|++++|+..|+++++..+. +..+|..+..
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~-~~~a~~nLg~ 85 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT-FADAYSNMGN 85 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHH
Confidence 46789999999999999999999999998875 446788999999999999999999999999987543 6789999999
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCCCCCcHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcC
Q 038190 166 GLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAV 245 (531)
Q Consensus 166 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~ 245 (531)
+|...|++++|++.|++..+. .|+ +..+|+.+..+|...|++++|+..|++..+.... +...+..+..++...|
T Consensus 86 ~l~~~g~~~~A~~~~~kAl~l--~P~---~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~-~~~a~~~L~~~l~~~g 159 (723)
T 4gyw_A 86 TLKEMQDVQGALQCYTRAIQI--NPA---FADAHSNLASIHKDSGNIPEAIASYRTALKLKPD-FPDAYCNLAHCLQIVC 159 (723)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--CTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTT
T ss_pred HHHHcCCHHHHHHHHHHHHHh--CCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHhhhhhHHHhcc
Confidence 999999999999999999886 553 7889999999999999999999999998875322 5778888999999999
Q ss_pred ChhhhhcchHHHHHHHHHHHhCC
Q 038190 246 NWEDAKGNTSAALELHEEFVNGN 268 (531)
Q Consensus 246 ~~~~a~~~~~~a~~~~~~~~~~~ 268 (531)
++++|.+.+++++++........
T Consensus 160 ~~~~A~~~~~kal~l~~~~~~~~ 182 (723)
T 4gyw_A 160 DWTDYDERMKKLVSIVADQLEKN 182 (723)
T ss_dssp CCTTHHHHHHHHHHHHHHHHHTT
T ss_pred cHHHHHHHHHHHHHhChhHHhhc
Confidence 99999998988888887766554
No 81
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.30 E-value=1.8e-11 Score=110.39 Aligned_cols=236 Identities=12% Similarity=-0.050 Sum_probs=155.9
Q ss_pred cCCHHHHHHHHHHHHHc-------CCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhC------CC-CCCHhhHHHHHH
Q 038190 65 EVELNDALCFFNYMIHM-------QPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTI------GL-LPDFVSLNILMN 130 (531)
Q Consensus 65 ~g~~~~A~~~~~~~~~~-------~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~------g~-~~~~~~~~~li~ 130 (531)
.|++++|...|++..+. .......+|..+...+...|++++|+..++++.+. +- +....++..+..
T Consensus 14 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~ 93 (283)
T 3edt_B 14 LVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAV 93 (283)
T ss_dssp CSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHH
Confidence 45666677666666552 22224668899999999999999999999998754 21 223557889999
Q ss_pred HHHccCCcchHHHHHHHHHHCC-----C--CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcC---CCCCCCCcHHhHH
Q 038190 131 CFCKMIGVSDAFVALGRILRKV-----F--SPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFD---CRPNVIPNVICYA 200 (531)
Q Consensus 131 ~~~~~g~~~~a~~~~~~~~~~~-----~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~~~~~~~~ 200 (531)
++...|++++|...++++++.. . +....++..+...|...|++++|+..|++..... ..++......++.
T Consensus 94 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 173 (283)
T 3edt_B 94 LYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKN 173 (283)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence 9999999999999999988751 1 2245688889999999999999999999988751 0111112466889
Q ss_pred HHHHHHHhcCChhHHHHHHHHHhhC-------CCCCCHhhHHHHHHHHHhcCChhhhhcchHHHHHHHHHHHhCCCCCCc
Q 038190 201 SIIDGLCKDGFVNKVRVLFLDMKGR-------GIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGV 273 (531)
Q Consensus 201 ~l~~~~~~~~~~~~a~~~~~~m~~~-------g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~ 273 (531)
.+...|...|++++|...|++..+. ...+....+...+..+...+........+..+...++.....
T Consensus 174 ~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------ 247 (283)
T 3edt_B 174 NLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVD------ 247 (283)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCC------
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCC------
Confidence 9999999999999999999988753 122332233333333333333333333233333333222111
Q ss_pred cccCCHhhHHHHHHHHhcCCCHHHHHHHHHHHHh
Q 038190 274 ICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKS 307 (531)
Q Consensus 274 ~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 307 (531)
.+....++..+...|...|++++|..+|++..+
T Consensus 248 -~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 248 -SPTVNTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp -CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred -CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 123345677788888888888888888887764
No 82
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.27 E-value=5.2e-10 Score=93.53 Aligned_cols=162 Identities=18% Similarity=0.083 Sum_probs=87.4
Q ss_pred hhHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 038190 280 LSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSY 359 (531)
Q Consensus 280 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~ 359 (531)
..+..+...+...|++++|...++.+.+.. +.+...+..+...+...|++++|...++++.+.... +...+..+...+
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~ 86 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPD-NVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHH
Confidence 344555555666666666666666555432 224555555555666666666666666665554321 445555555555
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHhhhCCCCC
Q 038190 360 SKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEP 439 (531)
Q Consensus 360 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p 439 (531)
...|++++|...++++.+.. | .+...+..+...+...|++++|..+++++.+.. +.
T Consensus 87 ~~~~~~~~A~~~~~~~~~~~--~---------------------~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~ 142 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEAN--P---------------------INFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PN 142 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHHC--T---------------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TT
T ss_pred HHhcCHHHHHHHHHHHHhcC--c---------------------HhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-cc
Confidence 55666666666655554421 1 144555555555555666666666655555432 22
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 038190 440 NVVTYTVMICGLCIEGGIEKAYDLLPDM 467 (531)
Q Consensus 440 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 467 (531)
+...+..+...+...|++++|.+.++++
T Consensus 143 ~~~~~~~la~~~~~~~~~~~A~~~~~~~ 170 (186)
T 3as5_A 143 EGKVHRAIAFSYEQMGRHEEALPHFKKA 170 (186)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3445555555555555555555555443
No 83
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.26 E-value=8.4e-10 Score=92.23 Aligned_cols=147 Identities=17% Similarity=0.089 Sum_probs=104.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHH
Q 038190 315 VVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELF 394 (531)
Q Consensus 315 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~ 394 (531)
..+..+...+...|++++|...++++.+.... +...+..+...+...|++++|...++++.+.. |
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~------------ 73 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDADAF-DVDVALHLGIAYVKTGAVDRGTELLERSLADA--P------------ 73 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--T------------
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcc-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--C------------
Confidence 44556666777778888888888777665332 56677777777788888888888887776532 2
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH----
Q 038190 395 RTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK---- 470 (531)
Q Consensus 395 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---- 470 (531)
.+..++..+...+...|++++|.++++++.+.. +.+...+..+..++...|++++|++.++++.+.
T Consensus 74 ---------~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~ 143 (186)
T 3as5_A 74 ---------DNVKVATVLGLTYVQVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNE 143 (186)
T ss_dssp ---------TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred ---------CCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccc
Confidence 156677777777888888888888888777642 335667777777777888888888888777665
Q ss_pred -------------HhhHHHHHHHHHHHHH
Q 038190 471 -------------IRECLKAIELLHKMAK 486 (531)
Q Consensus 471 -------------i~~~~~a~~~~~~~~~ 486 (531)
.|++++|...++++.+
T Consensus 144 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 172 (186)
T 3as5_A 144 GKVHRAIAFSYEQMGRHEEALPHFKKANE 172 (186)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 2667777777776664
No 84
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.26 E-value=3.4e-09 Score=92.07 Aligned_cols=186 Identities=13% Similarity=-0.000 Sum_probs=146.3
Q ss_pred CCHhhHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 038190 277 PDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLI 356 (531)
Q Consensus 277 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li 356 (531)
.|...+......+...|++++|...|++..+....++...+..+..++...|++++|...|++..+.... +...|..+.
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~ 83 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYN-LANAYIGKS 83 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCS-HHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcc-hHHHHHHHH
Confidence 4567888899999999999999999999998754367788888999999999999999999999987544 667888999
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHhCCCCCCH-------HHHHHHHHHHHcCCChHHHHHHH
Q 038190 357 NSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDL-------TVFNCLVDGLCKSWRLRSAWELF 429 (531)
Q Consensus 357 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~A~~~~ 429 (531)
..|...|++++|...+++..+.. |+ +. .+|..+...+...|++++|...|
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~~--p~---------------------~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~ 140 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKAV--PG---------------------NATIEKLYAIYYLKEGQKFQQAGNIEKAEENY 140 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS--TT---------------------CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHC--CC---------------------cHHHHHHHHHHHHHHhHHHHHhccHHHHHHHH
Confidence 99999999999999999988743 32 34 46888899999999999999999
Q ss_pred HHhhhCCCCCc---HHHHHHHHHHHHHcCCH--HHHHHH-------H-HHHHHHHhhHHHHHHHHHHHHHcC
Q 038190 430 KKLPRYGPEPN---VVTYTVMICGLCIEGGI--EKAYDL-------L-PDMEEKIRECLKAIELLHKMAKRY 488 (531)
Q Consensus 430 ~~~~~~g~~p~---~~~~~~l~~~~~~~g~~--~~A~~~-------~-~~~~~~i~~~~~a~~~~~~~~~~~ 488 (531)
++..+. .|+ ...|..+..+|...|+. +++..+ + .......+.+++|+..+++.++..
T Consensus 141 ~~al~~--~p~~~~~~~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~ 210 (228)
T 4i17_A 141 KHATDV--TSKKWKTDALYSLGVLFYNNGADVLRKATPLASSNKEKYASEKAKADAAFKKAVDYLGEAVTLS 210 (228)
T ss_dssp HHHTTS--SCHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHhc--CCCcccHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 999984 565 56777888888776654 222211 0 111111366778888888887654
No 85
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.24 E-value=3.4e-10 Score=114.52 Aligned_cols=168 Identities=14% Similarity=0.079 Sum_probs=148.2
Q ss_pred cCCHhhHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHH
Q 038190 276 HPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTL 355 (531)
Q Consensus 276 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~l 355 (531)
+-+..+|+.+...+.+.|++++|++.|++..+.. +-+...+..+..+|.+.|++++|...|++.++.... +...|..+
T Consensus 6 P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~-~~~a~~nL 83 (723)
T 4gyw_A 6 PTHADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT-FADAYSNM 83 (723)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHH
Confidence 3456789999999999999999999999998863 235788999999999999999999999999987544 67899999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHhhhC
Q 038190 356 INSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRY 435 (531)
Q Consensus 356 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 435 (531)
..+|...|++++|++.|++..+. .|+ +...|..+..+|...|++++|++.|++.++.
T Consensus 84 g~~l~~~g~~~~A~~~~~kAl~l--~P~---------------------~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l 140 (723)
T 4gyw_A 84 GNTLKEMQDVQGALQCYTRAIQI--NPA---------------------FADAHSNLASIHKDSGNIPEAIASYRTALKL 140 (723)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH--CTT---------------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh--CCC---------------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 99999999999999999998874 343 7889999999999999999999999999985
Q ss_pred CCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 038190 436 GPEP-NVVTYTVMICGLCIEGGIEKAYDLLPDMEEK 470 (531)
Q Consensus 436 g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 470 (531)
.| +...|..+..+|...|++++|.+.+++..+.
T Consensus 141 --~P~~~~a~~~L~~~l~~~g~~~~A~~~~~kal~l 174 (723)
T 4gyw_A 141 --KPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSI 174 (723)
T ss_dssp --CSCCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHH
T ss_pred --CCCChHHHhhhhhHHHhcccHHHHHHHHHHHHHh
Confidence 44 5778999999999999999999998877654
No 86
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.18 E-value=4e-09 Score=91.66 Aligned_cols=174 Identities=12% Similarity=-0.031 Sum_probs=93.8
Q ss_pred hhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCcchHHHHHHHHHHCCCCCChhhHHHHHHH
Q 038190 87 MPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRG 166 (531)
Q Consensus 87 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 166 (531)
...|......+...|++++|+..|++..+...+++...+..+..++...|++++|...+++.++..+. +..++..+..+
T Consensus 7 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~ 85 (228)
T 4i17_A 7 PNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYN-LANAYIGKSAA 85 (228)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCS-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcc-hHHHHHHHHHH
Confidence 34555555555566666666666666655542245555555555566666666666666666555322 44455555666
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCCCCCcH-------HhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCC---HhhHHH
Q 038190 167 LCMQGKFTEASGLFTKFVAFDCRPNVIPNV-------ICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPD---AFVYNS 236 (531)
Q Consensus 167 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~---~~~~~~ 236 (531)
|...|++++|+..|++.... .|+ +. .+|..+...+...|++++|...|++..+. .|+ ...+..
T Consensus 86 ~~~~~~~~~A~~~~~~al~~--~p~---~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~ 158 (228)
T 4i17_A 86 YRDMKNNQEYIATLTEGIKA--VPG---NATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--TSKKWKTDALYS 158 (228)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--STT---CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--SCHHHHHHHHHH
T ss_pred HHHcccHHHHHHHHHHHHHH--CCC---cHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--CCCcccHHHHHH
Confidence 66666666666666665554 221 23 33555555555666666666666665543 232 234444
Q ss_pred HHHHHHhcCCh--------------------hhhhcchHHHHHHHHHHHhCC
Q 038190 237 LIRVYCCAVNW--------------------EDAKGNTSAALELHEEFVNGN 268 (531)
Q Consensus 237 li~~~~~~~~~--------------------~~a~~~~~~a~~~~~~~~~~~ 268 (531)
+...+...|+. ..+.+.+++|+..++...+..
T Consensus 159 l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~ 210 (228)
T 4i17_A 159 LGVLFYNNGADVLRKATPLASSNKEKYASEKAKADAAFKKAVDYLGEAVTLS 210 (228)
T ss_dssp HHHHHHHHHHHHHHHHGGGTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 44444444443 222334466666777777654
No 87
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.12 E-value=2.3e-09 Score=97.02 Aligned_cols=214 Identities=9% Similarity=-0.063 Sum_probs=146.2
Q ss_pred ChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChhhhhcchHHHHHHHHHHHhCCCCCCccccCCHhhHHHHHHHHh
Q 038190 211 FVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLC 290 (531)
Q Consensus 211 ~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~ 290 (531)
++++|...|++. ...|...|++++|...+.+|++++..... ......+|+.+..+|.
T Consensus 32 ~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~--------~~~~a~~~~~lg~~~~ 88 (292)
T 1qqe_A 32 KFEEAADLCVQA---------------ATIYRLRKELNLAGDSFLKAADYQKKAGN--------EDEAGNTYVEAYKCFK 88 (292)
T ss_dssp HHHHHHHHHHHH---------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCC--------HHHHHHHHHHHHHHHH
Confidence 477787777776 33567788888888888888777654311 1112567888899999
Q ss_pred cCCCHHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhc-CCHHHHHHHHHHHHhcCCCC-C----HHHHHHHHHHH
Q 038190 291 KDVLVDKAKELFLDMKSR----GIIP-DVVVYSSLIDGYCLM-GRIDDARKLFVSIESEGCIP-D----TSSYNTLINSY 359 (531)
Q Consensus 291 ~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~ll~~~~~~-g~~~~a~~~~~~~~~~g~~p-~----~~~~~~li~~~ 359 (531)
..|++++|...|++..+. |-.. -..+++.+..+|... |++++|...|++..+..... + ..++..+...|
T Consensus 89 ~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~ 168 (292)
T 1qqe_A 89 SGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLK 168 (292)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHH
Confidence 999999999888877653 1110 135778888889986 99999999999877642110 1 35688889999
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHcCCChHHHHHHHHHhhhCCCC
Q 038190 360 SKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFEL-DLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPE 438 (531)
Q Consensus 360 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~ 438 (531)
.+.|++++|+..|++..+...... .... ....|..+..++...|++++|...|++..+. .
T Consensus 169 ~~~g~~~~A~~~~~~al~~~~~~~-----------------~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~ 229 (292)
T 1qqe_A 169 ALDGQYIEASDIYSKLIKSSMGNR-----------------LSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSE--D 229 (292)
T ss_dssp HHTTCHHHHHHHHHHHHHTTSSCT-----------------TTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---
T ss_pred HHhCCHHHHHHHHHHHHHHHhcCC-----------------cccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--C
Confidence 999999999999999887532211 0000 1126788889999999999999999999873 4
Q ss_pred CcHH------HHHHHHHHHH--HcCCHHHHHHHHHH
Q 038190 439 PNVV------TYTVMICGLC--IEGGIEKAYDLLPD 466 (531)
Q Consensus 439 p~~~------~~~~l~~~~~--~~g~~~~A~~~~~~ 466 (531)
|+.. .+..++.++. ..+++++|++.|++
T Consensus 230 p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~ 265 (292)
T 1qqe_A 230 PNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDN 265 (292)
T ss_dssp --------HHHHHHHHHHHHTTCTTTHHHHHHHHTT
T ss_pred CCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhcc
Confidence 4321 2344555553 34556666555543
No 88
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.11 E-value=4.9e-08 Score=86.52 Aligned_cols=254 Identities=10% Similarity=-0.008 Sum_probs=162.6
Q ss_pred HHHHHhcCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChhhhhcchHHHHHHHHHHHhCCCCCCccccCCHhhH
Q 038190 203 IDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSY 282 (531)
Q Consensus 203 ~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (531)
++-..-.|++..++.-...+.. .. .......+.+++...|++..... ..|....+
T Consensus 20 ikn~fy~G~yq~~i~e~~~~~~--~~-~~~~~~~~~Rs~iAlg~~~~~~~----------------------~~~~~~a~ 74 (310)
T 3mv2_B 20 IKQNYYTGNFVQCLQEIEKFSK--VT-DNTLLFYKAKTLLALGQYQSQDP----------------------TSKLGKVL 74 (310)
T ss_dssp HHHHHTTTCHHHHTHHHHTSSC--CC-CHHHHHHHHHHHHHTTCCCCCCS----------------------SSTTHHHH
T ss_pred HHHHHHhhHHHHHHHHHHhcCc--cc-hHHHHHHHHHHHHHcCCCccCCC----------------------CCHHHHHH
Confidence 3344456888877763332221 11 22333445577777776654221 23444444
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-CCHHHHHHHHHHHHh
Q 038190 283 CSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCI-PDTSSYNTLINSYSK 361 (531)
Q Consensus 283 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~-p~~~~~~~li~~~~~ 361 (531)
..+...+ ..+ |...|++..+.+ .++..++..+..++...|++++|.+++.+.+..|.. -+...+..++..+.+
T Consensus 75 ~~la~~~-~~~----a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~ 148 (310)
T 3mv2_B 75 DLYVQFL-DTK----NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALL 148 (310)
T ss_dssp HHHHHHH-TTT----CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHH
T ss_pred HHHHHHh-ccc----HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHH
Confidence 4444433 322 677888777665 456666678888999999999999999998776541 256778888999999
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHhCCCCC-----CHHHHHHHHHH--HHc--CCChHHHHHHHHHh
Q 038190 362 IEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFEL-----DLTVFNCLVDG--LCK--SWRLRSAWELFKKL 432 (531)
Q Consensus 362 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~-----~~~~~~~l~~~--~~~--~g~~~~A~~~~~~~ 432 (531)
.|+.+.|.+.+++|.+. .| +..+...|+.+ ... .+++++|..+|+++
T Consensus 149 ~~r~d~A~k~l~~~~~~------------------------~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El 204 (310)
T 3mv2_B 149 NNNVSTASTIFDNYTNA------------------------IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEEL 204 (310)
T ss_dssp TTCHHHHHHHHHHHHHH------------------------SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhc------------------------CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHH
Confidence 99999999999999774 22 23455555555 333 34999999999999
Q ss_pred hhCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhHHHHHHHHHHH-HHcC-CCCCHHHHHHHHHHHhccCChh
Q 038190 433 PRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECLKAIELLHKM-AKRY-VKPDEITVSILEELLNKDENCH 510 (531)
Q Consensus 433 ~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~i~~~~~a~~~~~~~-~~~~-~~~~~~~~~~l~~~~~~~g~~~ 510 (531)
.+. .|+..+-..++.++.+.|++++|.+.++.+.+. +-.. .+.+ -+-+..++..++.+....|+
T Consensus 205 ~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~----------~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk-- 270 (310)
T 3mv2_B 205 SQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSD----------YYSVEQKENAVLYKPTFLANQITLALMQGL-- 270 (310)
T ss_dssp HTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSH----------HHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--
T ss_pred HHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHh----------cccccccccCCCCCHHHHHHHHHHHHHhCh--
Confidence 874 455334444555888999999998888654321 0000 0000 02355677667666666776
Q ss_pred HHHhhHHHhhhcchh
Q 038190 511 ECMNLLPSFLSRNQE 525 (531)
Q Consensus 511 ~a~~~~~~~~~~~~~ 525 (531)
+|.++++++....+.
T Consensus 271 ~a~~l~~qL~~~~P~ 285 (310)
T 3mv2_B 271 DTEDLTNQLVKLDHE 285 (310)
T ss_dssp TTHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHhCCC
Confidence 788888887766543
No 89
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.09 E-value=1.1e-09 Score=111.28 Aligned_cols=190 Identities=6% Similarity=-0.145 Sum_probs=152.1
Q ss_pred CcCCHHHHHHHHHHHH--------HcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcc
Q 038190 64 GEVELNDALCFFNYMI--------HMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKM 135 (531)
Q Consensus 64 ~~g~~~~A~~~~~~~~--------~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~ 135 (531)
..|++++|++.|+++. +..+. +...|..+..++.+.|++++|+..|+++.+.. +.+...|..+..++...
T Consensus 403 ~~~~~~~A~~~~~~al~~~~~~~~~~~p~-~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 403 VLSQPVQTLDSLRAARHGALDADGVDFSE-SVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELLT 480 (681)
T ss_dssp TTCCHHHHHHHHHHHHTC-------CCTT-CSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHhhhhccccccccccc-chhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHHc
Confidence 4569999999999998 54444 66789999999999999999999999998875 55778999999999999
Q ss_pred CCcchHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCCCcHHhHHHHHHHHHhcCChhHH
Q 038190 136 IGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKV 215 (531)
Q Consensus 136 g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 215 (531)
|++++|...|+++++..+. +...+..+..+|.+.|++++ +..|++..+. .|+ +..+|..+..++.+.|++++|
T Consensus 481 g~~~~A~~~~~~al~l~P~-~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~--~P~---~~~a~~~lg~~~~~~g~~~~A 553 (681)
T 2pzi_A 481 GDYDSATKHFTEVLDTFPG-ELAPKLALAATAELAGNTDE-HKFYQTVWST--NDG---VISAAFGLARARSAEGDRVGA 553 (681)
T ss_dssp TCHHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHHTCCCT-TCHHHHHHHH--CTT---CHHHHHHHHHHHHHTTCHHHH
T ss_pred CCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCChHH-HHHHHHHHHh--CCc---hHHHHHHHHHHHHHcCCHHHH
Confidence 9999999999999988643 67788999999999999999 9999999986 453 778999999999999999999
Q ss_pred HHHHHHHhhCCCCCC-HhhHHHHHHHHHhcCChhhh-hcchHHHHHHHHHH
Q 038190 216 RVLFLDMKGRGIYPD-AFVYNSLIRVYCCAVNWEDA-KGNTSAALELHEEF 264 (531)
Q Consensus 216 ~~~~~~m~~~g~~p~-~~~~~~li~~~~~~~~~~~a-~~~~~~a~~~~~~~ 264 (531)
...|++..+. .|+ ...+..+..++...+..+++ .+.+++|.+.+..+
T Consensus 554 ~~~~~~al~l--~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~~ 602 (681)
T 2pzi_A 554 VRTLDEVPPT--SRHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEAL 602 (681)
T ss_dssp HHHHHTSCTT--STTHHHHHHHHHHHTC-------CCHHHHHHHHHHHHTS
T ss_pred HHHHHhhccc--CcccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhhC
Confidence 9999998875 344 55666677777666654444 45555665565544
No 90
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.06 E-value=7.6e-09 Score=93.58 Aligned_cols=245 Identities=16% Similarity=0.054 Sum_probs=167.1
Q ss_pred chHHHHHHHHHHCCCCCChhhHHHHHHHHHhc--C-ChHHHHHHHHHHHHcCCCCCCCCcHHhHHHHHHHHHhcCChhHH
Q 038190 139 SDAFVALGRILRKVFSPDVVTLGCLIRGLCMQ--G-KFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKV 215 (531)
Q Consensus 139 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~--g-~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 215 (531)
.+|.+++.+..+.- +.+...+ .+ + +. + ++++|...|++. ...|...|++++|
T Consensus 2 ~~a~~~~~~a~k~~-~~~~~~~-~~---~-~~~~~~~~~~A~~~~~~a-------------------~~~~~~~g~~~~A 56 (292)
T 1qqe_A 2 SDPVELLKRAEKKG-VPSSGFM-KL---F-SGSDSYKFEEAADLCVQA-------------------ATIYRLRKELNLA 56 (292)
T ss_dssp CCHHHHHHHHHHHS-SCCCTHH-HH---H-SCCSHHHHHHHHHHHHHH-------------------HHHHHHTTCTHHH
T ss_pred CcHHHHHHHHHHHh-CcCCCcc-hh---c-CCCCCccHHHHHHHHHHH-------------------HHHHHHcCCHHHH
Confidence 35666777666652 2221122 22 2 32 2 477777777665 3346778999999
Q ss_pred HHHHHHHhhC----CCCCC-HhhHHHHHHHHHhcCChhhhhcchHHHHHHHHHHHhCCCCCCccccCCHhhHHHHHHHHh
Q 038190 216 RVLFLDMKGR----GIYPD-AFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLC 290 (531)
Q Consensus 216 ~~~~~~m~~~----g~~p~-~~~~~~li~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~ 290 (531)
...|++..+. |-.++ ..+|+.+..+|...|++++|...+++|++++..... ...-..+++.+...|.
T Consensus 57 ~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~--------~~~~a~~~~~lg~~~~ 128 (292)
T 1qqe_A 57 GDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQ--------FRRGANFKFELGEILE 128 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCC--------HHHHHHHHHHHHHHHH
Confidence 9998877543 22222 467888899999999999999988888887754311 1112457888999999
Q ss_pred cC-CCHHHHHHHHHHHHhCCCCC-C----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCH------HHHHHHHHH
Q 038190 291 KD-VLVDKAKELFLDMKSRGIIP-D----VVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDT------SSYNTLINS 358 (531)
Q Consensus 291 ~~-~~~~~a~~~~~~~~~~~~~~-~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~------~~~~~li~~ 358 (531)
.. |++++|...|++..+..... + ..++..+...|.+.|++++|...|++..+....... ..|..+..+
T Consensus 129 ~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~ 208 (292)
T 1qqe_A 129 NDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLC 208 (292)
T ss_dssp HTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHH
T ss_pred HhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHH
Confidence 96 99999999999887641110 1 356888899999999999999999999986543222 156778888
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH--cCCChHHHHHHHHHhhh
Q 038190 359 YSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLC--KSWRLRSAWELFKKLPR 434 (531)
Q Consensus 359 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~g~~~~A~~~~~~~~~ 434 (531)
+...|++++|...|++..+. .|+... ......+..++.+|. ..+++++|+..|+++..
T Consensus 209 ~~~~g~~~~A~~~~~~al~l--~p~~~~----------------~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~ 268 (292)
T 1qqe_A 209 QLAATDAVAAARTLQEGQSE--DPNFAD----------------SRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMR 268 (292)
T ss_dssp HHHTTCHHHHHHHHHGGGCC---------------------------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSC
T ss_pred HHHcCCHHHHHHHHHHHHhh--CCCCCC----------------cHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCc
Confidence 99999999999999987652 232000 001224555666665 56789999999988775
No 91
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.05 E-value=1.4e-07 Score=83.71 Aligned_cols=244 Identities=9% Similarity=-0.024 Sum_probs=158.6
Q ss_pred HHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCcchHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCh
Q 038190 94 LGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKF 173 (531)
Q Consensus 94 i~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 173 (531)
|+-..-.|++..++.-...+.. .........+.+++...|++... ....|....+..+... ...+
T Consensus 20 ikn~fy~G~yq~~i~e~~~~~~---~~~~~~~~~~~Rs~iAlg~~~~~---------~~~~~~~~a~~~la~~-~~~~-- 84 (310)
T 3mv2_B 20 IKQNYYTGNFVQCLQEIEKFSK---VTDNTLLFYKAKTLLALGQYQSQ---------DPTSKLGKVLDLYVQF-LDTK-- 84 (310)
T ss_dssp HHHHHTTTCHHHHTHHHHTSSC---CCCHHHHHHHHHHHHHTTCCCCC---------CSSSTTHHHHHHHHHH-HTTT--
T ss_pred HHHHHHhhHHHHHHHHHHhcCc---cchHHHHHHHHHHHHHcCCCccC---------CCCCHHHHHHHHHHHH-hccc--
Confidence 4445567888888774333221 22223444455778777777642 1123333344433333 2322
Q ss_pred HHHHHHHHHHHHcCCCCCCCCcHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCC-CCCHhhHHHHHHHHHhcCChhhhhc
Q 038190 174 TEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGI-YPDAFVYNSLIRVYCCAVNWEDAKG 252 (531)
Q Consensus 174 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~-~p~~~~~~~li~~~~~~~~~~~a~~ 252 (531)
|+..|+++...+ + ++..++..+..++...|++++|++++.+....|. .-+...+..++..+.+.|+.+.|.+
T Consensus 85 --a~~~l~~l~~~~--~---~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k 157 (310)
T 3mv2_B 85 --NIEELENLLKDK--Q---NSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTAST 157 (310)
T ss_dssp --CCHHHHHTTTTS--C---CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred --HHHHHHHHHhcC--C---CCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHH
Confidence 677777776543 1 2455566888888889999999999988766543 1256667778888888888888888
Q ss_pred chHHHHHHHHHHHhCCCCCCccccC-----CHhhHHHHHHHHh----cCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 038190 253 NTSAALELHEEFVNGNGELGVICHP-----DVLSYCSIINSLC----KDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDG 323 (531)
Q Consensus 253 ~~~~a~~~~~~~~~~~~~~~~~~~~-----~~~~~~~ll~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 323 (531)
.++.|.... | +..+...++.++. ..+++.+|..+|+++.+. .|+..+...++.+
T Consensus 158 -------~l~~~~~~~--------~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~ 220 (310)
T 3mv2_B 158 -------IFDNYTNAI--------EDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNL 220 (310)
T ss_dssp -------HHHHHHHHS--------CHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHH
T ss_pred -------HHHHHHhcC--------ccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHH
Confidence 888776643 5 3455555665532 234899999999999776 4554444555558
Q ss_pred HHhcCCHHHHHHHHHHHHhcC---------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 038190 324 YCLMGRIDDARKLFVSIESEG---------CIPDTSSYNTLINSYSKIEKVEEALSLYGEMISM 378 (531)
Q Consensus 324 ~~~~g~~~~a~~~~~~~~~~g---------~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 378 (531)
+.+.|++++|.+.++.+.+.- -.-+..+...+|......|+ +|.++++++.+.
T Consensus 221 ~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~ 282 (310)
T 3mv2_B 221 HLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKL 282 (310)
T ss_dssp HHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHT
T ss_pred HHHcCCHHHHHHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHh
Confidence 999999999999999776531 02256666566666666676 888999999874
No 92
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.03 E-value=2.8e-08 Score=88.29 Aligned_cols=214 Identities=11% Similarity=0.020 Sum_probs=148.2
Q ss_pred cCCHhhHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-C-CHH
Q 038190 276 HPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPD---VVVYSSLIDGYCLMGRIDDARKLFVSIESEGCI-P-DTS 350 (531)
Q Consensus 276 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~-p-~~~ 350 (531)
+.+...+......+.+.|++++|...|+.+.+... .+ ...+..+..+|.+.|++++|...|+++.+..+. | ...
T Consensus 12 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 90 (261)
T 3qky_A 12 HSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGR-THEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQ 90 (261)
T ss_dssp CSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCS-CSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHH
T ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC-CCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHH
Confidence 34566777788899999999999999999988632 13 677888889999999999999999999987432 1 245
Q ss_pred HHHHHHHHHHh--------cCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCh
Q 038190 351 SYNTLINSYSK--------IEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRL 422 (531)
Q Consensus 351 ~~~~li~~~~~--------~~~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 422 (531)
.+..+..++.. .|++++|...|+++.+. .|+......+...+..+... ....+..+...|...|++
T Consensus 91 a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a~~~~~~~~~~----~~~~~~~la~~~~~~g~~ 164 (261)
T 3qky_A 91 AEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR--YPNHELVDDATQKIRELRAK----LARKQYEAARLYERRELY 164 (261)
T ss_dssp HHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH--CTTCTTHHHHHHHHHHHHHH----HHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHH--CcCchhHHHHHHHHHHHHHH----HHHHHHHHHHHHHHccCH
Confidence 67777888888 99999999999999874 34433333333332222211 122346778999999999
Q ss_pred HHHHHHHHHhhhCCCCCc----HHHHHHHHHHHHHc----------CCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcC
Q 038190 423 RSAWELFKKLPRYGPEPN----VVTYTVMICGLCIE----------GGIEKAYDLLPDMEEKIRECLKAIELLHKMAKRY 488 (531)
Q Consensus 423 ~~A~~~~~~~~~~g~~p~----~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~i~~~~~a~~~~~~~~~~~ 488 (531)
++|...|+++++. .|+ ...+..+..+|... |++++|+..|+ ++++..
T Consensus 165 ~~A~~~~~~~l~~--~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~-----------------~~~~~~ 225 (261)
T 3qky_A 165 EAAAVTYEAVFDA--YPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYE-----------------RLLQIF 225 (261)
T ss_dssp HHHHHHHHHHHHH--CTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHH-----------------HHHHHC
T ss_pred HHHHHHHHHHHHH--CCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHH-----------------HHHHHC
Confidence 9999999999874 233 45677777788766 55555555554 444333
Q ss_pred CCCC--HHHHHHHHHHHhccCChhHHHhh
Q 038190 489 VKPD--EITVSILEELLNKDENCHECMNL 515 (531)
Q Consensus 489 ~~~~--~~~~~~l~~~~~~~g~~~~a~~~ 515 (531)
.... ......+..++.+.|+++++..+
T Consensus 226 p~~~~~~~a~~~l~~~~~~~~~~~~~~~~ 254 (261)
T 3qky_A 226 PDSPLLRTAEELYTRARQRLTELEGDASL 254 (261)
T ss_dssp TTCTHHHHHHHHHHHHHHHHHHHHTCTTC
T ss_pred CCChHHHHHHHHHHHHHHHHHHhhhhhHH
Confidence 2211 23455566666666666665544
No 93
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.03 E-value=1.2e-08 Score=79.97 Aligned_cols=130 Identities=14% Similarity=0.080 Sum_probs=104.5
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCcchHHHHHHHHHHCCCCCChhhHHHHHHHHH
Q 038190 89 SFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLC 168 (531)
Q Consensus 89 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 168 (531)
+|..+...+...|++++|+.+++++.+.+ +.+..++..+...+...|+++.|...++++.+.+. .+...+..+...+.
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~ 80 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-RSAEAWYNLGNAYY 80 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCC-CchHHHHHHHHHHH
Confidence 56777888888899999999998887764 44667788888888888999999999988887653 35667888888888
Q ss_pred hcCChHHHHHHHHHHHHcCCCCCCCCcHHhHHHHHHHHHhcCChhHHHHHHHHHhhC
Q 038190 169 MQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGR 225 (531)
Q Consensus 169 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 225 (531)
..|++++|...++++... .| .+..++..+...+...|++++|...|+++...
T Consensus 81 ~~~~~~~A~~~~~~~~~~--~~---~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 81 KQGDYDEAIEYYQKALEL--DP---RSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp TTTCHHHHHHHHHHHHHH--CT---TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHh--CC---CChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 899999999999888875 33 25677888888888999999999988887653
No 94
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.00 E-value=1.6e-08 Score=89.87 Aligned_cols=158 Identities=11% Similarity=-0.021 Sum_probs=126.1
Q ss_pred cCCHHHHHHHHHHHHHcCCCCC--hhhHHHHHHHHHccCCHHHHHHHHHHHHhCCC--CCCHhhHHHHHHHHHc------
Q 038190 65 EVELNDALCFFNYMIHMQPTPF--MPSFNSLLGALAGKKYYVNFICLSERLNTIGL--LPDFVSLNILMNCFCK------ 134 (531)
Q Consensus 65 ~g~~~~A~~~~~~~~~~~~~~~--~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~--~~~~~~~~~li~~~~~------ 134 (531)
.|++++|+..|+.+.+..|... ..++..+..++.+.|++++|+..|+++.+... +....++..+..++..
T Consensus 28 ~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~ 107 (261)
T 3qky_A 28 QGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYERAMCYYKLSPPYE 107 (261)
T ss_dssp TTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHCCCTT
T ss_pred hCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHHHHHHHHHhccccc
Confidence 4699999999999998766521 56888899999999999999999999988631 1224567778888888
Q ss_pred --cCCcchHHHHHHHHHHCCCCCChhhH-----------------HHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCCCc
Q 038190 135 --MIGVSDAFVALGRILRKVFSPDVVTL-----------------GCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPN 195 (531)
Q Consensus 135 --~g~~~~a~~~~~~~~~~~~~~~~~~~-----------------~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 195 (531)
.|++++|...|+++++..+. +.... ..+..+|...|++++|+..|++++.. .|+....
T Consensus 108 ~~~~~~~~A~~~~~~~l~~~p~-~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~ 184 (261)
T 3qky_A 108 LDQTDTRKAIEAFQLFIDRYPN-HELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEAVFDA--YPDTPWA 184 (261)
T ss_dssp SCCHHHHHHHHHHHHHHHHCTT-CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTSTTH
T ss_pred ccchhHHHHHHHHHHHHHHCcC-chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH--CCCCchH
Confidence 99999999999999987533 33333 45678899999999999999999886 3432224
Q ss_pred HHhHHHHHHHHHhc----------CChhHHHHHHHHHhhC
Q 038190 196 VICYASIIDGLCKD----------GFVNKVRVLFLDMKGR 225 (531)
Q Consensus 196 ~~~~~~l~~~~~~~----------~~~~~a~~~~~~m~~~ 225 (531)
...+..+..+|... |++++|...|+++.+.
T Consensus 185 ~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~ 224 (261)
T 3qky_A 185 DDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQI 224 (261)
T ss_dssp HHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHH
Confidence 55788888888866 8899999999999875
No 95
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.00 E-value=3.8e-08 Score=77.01 Aligned_cols=126 Identities=16% Similarity=0.221 Sum_probs=69.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHH
Q 038190 317 YSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRT 396 (531)
Q Consensus 317 ~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 396 (531)
+..+...+...|++++|..+++++.+.+.. +...+..+...+...|++++|..+++++.+.+ |
T Consensus 4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~-------------- 66 (136)
T 2fo7_A 4 WYNLGNAYYKQGDYDEAIEYYQKALELDPR-SAEAWYNLGNAYYKQGDYDEAIEYYQKALELD--P-------------- 66 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--T--------------
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHcCCc-chhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC--C--------------
Confidence 344455555556666666666655544322 44455555555666666666666666555422 1
Q ss_pred HHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 038190 397 LHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDM 467 (531)
Q Consensus 397 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 467 (531)
.+...+..+...+...|++++|..+++++.+.. +.+...+..+..++...|++++|.+.++++
T Consensus 67 -------~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 129 (136)
T 2fo7_A 67 -------RSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKA 129 (136)
T ss_dssp -------TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred -------CchHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHH
Confidence 144555556666666666666666666665532 223455555666666666666665555544
No 96
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.99 E-value=7.9e-07 Score=86.23 Aligned_cols=269 Identities=10% Similarity=-0.091 Sum_probs=138.8
Q ss_pred HHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCC-cchHHHHHH
Q 038190 68 LNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIG-VSDAFVALG 146 (531)
Q Consensus 68 ~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~-~~~a~~~~~ 146 (531)
++.|+.+|+.+...-| . |+++.+..+|++.+.. .|+...|...+....+.++ .+....+|+
T Consensus 11 i~~aR~vyer~l~~~P--~--------------~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe 72 (493)
T 2uy1_A 11 LSSPSAIMEHARRLYM--S--------------KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFKLYEVYE 72 (493)
T ss_dssp -CCHHHHHHHHHHHHH--T--------------TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----CTHHHHH
T ss_pred hHHHHHHHHHHHHHCC--C--------------CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHHHHHHHH
Confidence 6666777766655322 1 6677777777777764 4577777776666655552 345566666
Q ss_pred HHHHC-CCCC-ChhhHHHHHHHHH----hcCChHHHHHHHHHHHHcCCCCCCCCcHHhHHHHHHHHHh------------
Q 038190 147 RILRK-VFSP-DVVTLGCLIRGLC----MQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCK------------ 208 (531)
Q Consensus 147 ~~~~~-~~~~-~~~~~~~li~~~~----~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~------------ 208 (531)
.++.. |..+ +...|...+..+. ..++.+.+..+|++.+.. |... -...|......-..
T Consensus 73 ~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~---P~~~-~~~lw~~Y~~fE~~~~~~~~~~~~~~ 148 (493)
T 2uy1_A 73 FTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQT---PMGS-LSELWKDFENFELELNKITGKKIVGD 148 (493)
T ss_dssp HHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTS---CCTT-HHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred HHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhC---hhhh-HHHHHHHHHHHHHHhccccHHHHHHH
Confidence 66542 3222 4556666665443 234566677777777652 2110 11222222221100
Q ss_pred -cCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcC-ChhhhhcchHHHHHHHHHHHhCCCCCCccccCCHhhHHHHH
Q 038190 209 -DGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAV-NWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSII 286 (531)
Q Consensus 209 -~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~-~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll 286 (531)
.+.+..|..+++.+...--..+...|...+..-...+ ..++. .....+..+|++..... +.+...|...+
T Consensus 149 ~~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~-~~~~Rv~~~ye~al~~~-------p~~~~lW~~ya 220 (493)
T 2uy1_A 149 TLPIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGR-PHESRMHFIHNYILDSF-------YYAEEVYFFYS 220 (493)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHH-HHHHHHHHHHHHHHHHT-------TTCHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcch-hhHHHHHHHHHHHHHcC-------CCCHHHHHHHH
Confidence 1123334444444332100013334554444322111 01111 01233445777776643 44577788888
Q ss_pred HHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC---------CCC---CHHHHHH
Q 038190 287 NSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEG---------CIP---DTSSYNT 354 (531)
Q Consensus 287 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g---------~~p---~~~~~~~ 354 (531)
..+.+.|+.+.|..+|+..... +.+...+. .|+...+.++ +++.+.+.- ..+ ....|..
T Consensus 221 ~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~----~y~~~~e~~~---~~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~ 291 (493)
T 2uy1_A 221 EYLIGIGQKEKAKKVVERGIEM--SDGMFLSL----YYGLVMDEEA---VYGDLKRKYSMGEAESAEKVFSKELDLLRIN 291 (493)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH--CCSSHHHH----HHHHHTTCTH---HHHHHHHHTC----------CHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHhC--CCcHHHHH----HHHhhcchhH---HHHHHHHHHHhhccchhhhhcccccHHHHHH
Confidence 8889999999999999999987 33332222 2222211111 122222110 001 1245666
Q ss_pred HHHHHHhcCCHHHHHHHHHHH
Q 038190 355 LINSYSKIEKVEEALSLYGEM 375 (531)
Q Consensus 355 li~~~~~~~~~~~a~~~~~~~ 375 (531)
.+..+.+.+..+.|..+|++.
T Consensus 292 y~~~~~r~~~~~~AR~i~~~A 312 (493)
T 2uy1_A 292 HLNYVLKKRGLELFRKLFIEL 312 (493)
T ss_dssp HHHHHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHh
Confidence 677777778899999999988
No 97
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.99 E-value=1.5e-07 Score=80.45 Aligned_cols=173 Identities=13% Similarity=-0.042 Sum_probs=137.5
Q ss_pred HHHHHHHhCCCCCCccccCCHhhHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC----CHHHHH
Q 038190 259 ELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMG----RIDDAR 334 (531)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g----~~~~a~ 334 (531)
..|+...+.+ +..++..+...|...+++++|..+|++..+.| +...+..|...|.. + ++++|.
T Consensus 7 ~~~~~aa~~g---------~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~ 73 (212)
T 3rjv_A 7 SQYQQQAEAG---------DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQAR 73 (212)
T ss_dssp HHHHHHHHTT---------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHH
T ss_pred HHHHHHHHCC---------CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHH
Confidence 3777776655 67788889999999999999999999998875 66778888888887 6 899999
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHhCCCCCCHHHHH
Q 038190 335 KLFVSIESEGCIPDTSSYNTLINSYSK----IEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFN 410 (531)
Q Consensus 335 ~~~~~~~~~g~~p~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 410 (531)
..|++..+.| +...+..|...|.. .+++++|+.+|++..+.+... .++..+.
T Consensus 74 ~~~~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~---------------------~~~~a~~ 129 (212)
T 3rjv_A 74 QLAEKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESD---------------------AAVDAQM 129 (212)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSH---------------------HHHHHHH
T ss_pred HHHHHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCc---------------------chHHHHH
Confidence 9999998875 67778888888877 788999999998887754210 0267888
Q ss_pred HHHHHHHc----CCChHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHc-C-----CHHHHHHHHHHHHHH
Q 038190 411 CLVDGLCK----SWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIE-G-----GIEKAYDLLPDMEEK 470 (531)
Q Consensus 411 ~l~~~~~~----~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~-g-----~~~~A~~~~~~~~~~ 470 (531)
.|...|.. .+++++|..+|++..+. ..+...+..|...|... | ++++|++.|++..+.
T Consensus 130 ~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~ 197 (212)
T 3rjv_A 130 LLGLIYASGVHGPEDDVKASEYFKGSSSL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLE 197 (212)
T ss_dssp HHHHHHHHTSSSSCCHHHHHHHHHHHHHT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCCCCHHHHHHHHHHHHHc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHc
Confidence 99999988 88999999999999885 23555777787777653 3 788888888766554
No 98
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.98 E-value=1.2e-08 Score=87.17 Aligned_cols=157 Identities=10% Similarity=0.040 Sum_probs=89.1
Q ss_pred HHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHH----------------HHHHHHccCCcchHHHHHHHHHHCCCCCCh
Q 038190 94 LGALAGKKYYVNFICLSERLNTIGLLPDFVSLNI----------------LMNCFCKMIGVSDAFVALGRILRKVFSPDV 157 (531)
Q Consensus 94 i~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~----------------li~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 157 (531)
...+...|++++|+..|++..+.. +-+...|.. +..++.+.|++++|...|++.++..+. +.
T Consensus 11 g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~ 88 (208)
T 3urz_A 11 VSAAIEAGQNGQAVSYFRQTIALN-IDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKAPN-NV 88 (208)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-HHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC-CH
Confidence 334445566666666666555442 222334444 667777777777777777777776533 56
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCCCcHHhHHHHHHHHHhcCC--hhHHHHHHHHHhhCCCCCCHhhHH
Q 038190 158 VTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGF--VNKVRVLFLDMKGRGIYPDAFVYN 235 (531)
Q Consensus 158 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~a~~~~~~m~~~g~~p~~~~~~ 235 (531)
.++..+..++...|++++|+..|++.... .|+ +..+|..+...|...|. .+.+...++.... ..|....+.
T Consensus 89 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~P~---~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~a~~ 161 (208)
T 3urz_A 89 DCLEACAEMQVCRGQEKDALRMYEKILQL--EAD---NLAANIFLGNYYYLTAEQEKKKLETDYKKLSS--PTKMQYARY 161 (208)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTT---CHHHHHHHHHHHHHHHHHHHHHHHHHHC---C--CCHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCC---CHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhC--CCchhHHHH
Confidence 67777777777777777777777777765 442 56677777776655443 3334444444432 122222222
Q ss_pred HHHHHHHhcCChhhhhcchHHHHHHHHHHHh
Q 038190 236 SLIRVYCCAVNWEDAKGNTSAALELHEEFVN 266 (531)
Q Consensus 236 ~li~~~~~~~~~~~a~~~~~~a~~~~~~~~~ 266 (531)
....++...|++++|.. .|++...
T Consensus 162 ~~g~~~~~~~~~~~A~~-------~~~~al~ 185 (208)
T 3urz_A 162 RDGLSKLFTTRYEKARN-------SLQKVIL 185 (208)
T ss_dssp HHHHHHHHHHTHHHHHH-------HHHHHTT
T ss_pred HHHHHHHHccCHHHHHH-------HHHHHHH
Confidence 33334444555555555 5555554
No 99
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.96 E-value=5.5e-09 Score=83.82 Aligned_cols=139 Identities=9% Similarity=-0.108 Sum_probs=92.4
Q ss_pred cCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCcchHHHH
Q 038190 65 EVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVA 144 (531)
Q Consensus 65 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~ 144 (531)
.|++++|+..|.......+. +...+-.+...|.+.|++++|++.|++.++.. +-+..+|..+..++.+.|++++|...
T Consensus 10 ~~~~e~ai~~~~~a~~~~p~-~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~A~~~ 87 (150)
T 4ga2_A 10 KADVERYIASVQGSTPSPRQ-KSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELEENTDKAVEC 87 (150)
T ss_dssp HHHHHHHHHHHHHHSCSHHH-HHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cChHHHHHHHHHHhcccCcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCchHHHHHH
Confidence 34777777777776553322 34455667777777778888887777777664 44666777777777777777777777
Q ss_pred HHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHH-HHHHHHcCCCCCCCCcHHhHHHHHHHHHhcCC
Q 038190 145 LGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGL-FTKFVAFDCRPNVIPNVICYASIIDGLCKDGF 211 (531)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 211 (531)
|+++++..+. +..++..+..+|.+.|++++|... +++..+. .|+ +..+|......+...|+
T Consensus 88 ~~~al~~~p~-~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l--~P~---~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 88 YRRSVELNPT-QKDLVLKIAELLCKNDVTDGRAKYWVERAAKL--FPG---SPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHCTT-CHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHH--STT---CHHHHHHHHHHHHTCCC
T ss_pred HHHHHHhCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHHh--CcC---CHHHHHHHHHHHHHhCc
Confidence 7777776433 566777777777777777665544 4666654 443 56666666666655553
No 100
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.95 E-value=1.1e-08 Score=84.77 Aligned_cols=152 Identities=13% Similarity=-0.030 Sum_probs=103.1
Q ss_pred cCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHH-HHccCCcchHHH
Q 038190 65 EVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNC-FCKMIGVSDAFV 143 (531)
Q Consensus 65 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~-~~~~g~~~~a~~ 143 (531)
.|++++|...|+++.+..|. +...|..+...+.+.|++++|+..+++..... |+...+..+... +...+....|..
T Consensus 19 ~g~~~~A~~~~~~al~~~P~-~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~~~~~~~~~a~~ 95 (176)
T 2r5s_A 19 QGEHAQALNVIQTLSDELQS-RGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKLELHQQAAESPELK 95 (176)
T ss_dssp TTCHHHHHHHHHTSCHHHHT-SHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHHHHHHHHTSCHHHH
T ss_pred cCCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHHHHHhhcccchHHH
Confidence 35788888888887776555 66778888888888888888888888876553 244433322212 222234445677
Q ss_pred HHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCCCcHHhHHHHHHHHHhcCChhHHHHHHHHHh
Q 038190 144 ALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMK 223 (531)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 223 (531)
.+++.++..+. +...+..+..++...|++++|+..|+++......+ .+...+..+...+...|+.++|...|++..
T Consensus 96 ~~~~al~~~P~-~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~a~~~l~~~~~~~g~~~~A~~~y~~al 171 (176)
T 2r5s_A 96 RLEQELAANPD-NFELACELAVQYNQVGRDEEALELLWNILKVNLGA---QDGEVKKTFMDILSALGQGNAIASKYRRQL 171 (176)
T ss_dssp HHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTT---TTTHHHHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred HHHHHHHhCCC-CHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCccc---ChHHHHHHHHHHHHHhCCCCcHHHHHHHHH
Confidence 77777776432 56777778888888888888888888877653221 134567777888888888888888777654
No 101
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.94 E-value=5.6e-08 Score=82.89 Aligned_cols=160 Identities=13% Similarity=0.046 Sum_probs=114.2
Q ss_pred hHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCC-CHHHHHH----------------HHHHHHhcCCHHHHHHHHHHHHhc
Q 038190 281 SYCSIINSLCKDVLVDKAKELFLDMKSRGIIP-DVVVYSS----------------LIDGYCLMGRIDDARKLFVSIESE 343 (531)
Q Consensus 281 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~----------------ll~~~~~~g~~~~a~~~~~~~~~~ 343 (531)
.+......+...|++++|...|++..+. .| +...+.. +..+|.+.|++++|...|++..+.
T Consensus 6 ~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 83 (208)
T 3urz_A 6 EMLQKVSAAIEAGQNGQAVSYFRQTIAL--NIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQK 83 (208)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 3444556677899999999999998876 33 3445555 788899999999999999999887
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCC--
Q 038190 344 GCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWR-- 421 (531)
Q Consensus 344 g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-- 421 (531)
.+. +...|..+...|...|++++|...|++..+. .|+ +..+|..+..+|...|+
T Consensus 84 ~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~P~---------------------~~~a~~~lg~~~~~~~~~~ 139 (208)
T 3urz_A 84 APN-NVDCLEACAEMQVCRGQEKDALRMYEKILQL--EAD---------------------NLAANIFLGNYYYLTAEQE 139 (208)
T ss_dssp CTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTT---------------------CHHHHHHHHHHHHHHHHHH
T ss_pred CCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCC---------------------CHHHHHHHHHHHHHHhHHH
Confidence 644 7788899999999999999999999998874 343 77888888888876654
Q ss_pred hHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 038190 422 LRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDME 468 (531)
Q Consensus 422 ~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 468 (531)
...+...++.... ..|....+.....++...|++++|+..|++..
T Consensus 140 ~~~~~~~~~~~~~--~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al 184 (208)
T 3urz_A 140 KKKLETDYKKLSS--PTKMQYARYRDGLSKLFTTRYEKARNSLQKVI 184 (208)
T ss_dssp HHHHHHHHC---C--CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhC--CCchhHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 3445555555542 22223334444555666777777766665543
No 102
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.93 E-value=2.2e-08 Score=99.97 Aligned_cols=153 Identities=12% Similarity=-0.025 Sum_probs=120.2
Q ss_pred CCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCcchHHHHH
Q 038190 66 VELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVAL 145 (531)
Q Consensus 66 g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~ 145 (531)
|++++|...|+++.+..+. +...|..+...+.+.|++++|++.|++..+.. +.+..++..+..++...|++++|...+
T Consensus 3 g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 3 ADGPRELLQLRAAVRHRPQ-DFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp ------------------C-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 6899999999999887665 67889999999999999999999999999875 556788999999999999999999999
Q ss_pred HHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCCCcHHhHHHHHHHHHhc---CChhHHHHHHHHH
Q 038190 146 GRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKD---GFVNKVRVLFLDM 222 (531)
Q Consensus 146 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~a~~~~~~m 222 (531)
++.++..+. +...+..+..+|...|++++|.+.|++..+. .|+ +..++..+...+... |+.++|.+.+++.
T Consensus 81 ~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~---~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~a 154 (568)
T 2vsy_A 81 QQASDAAPE-HPGIALWLGHALEDAGQAEAAAAAYTRAHQL--LPE---EPYITAQLLNWRRRLCDWRALDVLSAQVRAA 154 (568)
T ss_dssp HHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTT---CHHHHHHHHHHHHHTTCCTTHHHHHHHHHHH
T ss_pred HHHHhcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCC---CHHHHHHHHHHHHHhhccccHHHHHHHHHHH
Confidence 999987543 6789999999999999999999999999886 442 678899999999999 9999999999998
Q ss_pred hhCC
Q 038190 223 KGRG 226 (531)
Q Consensus 223 ~~~g 226 (531)
.+.+
T Consensus 155 l~~~ 158 (568)
T 2vsy_A 155 VAQG 158 (568)
T ss_dssp HHHT
T ss_pred HhcC
Confidence 8753
No 103
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.92 E-value=1.2e-08 Score=93.12 Aligned_cols=232 Identities=10% Similarity=-0.014 Sum_probs=153.2
Q ss_pred cCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCcchHHHH
Q 038190 65 EVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVA 144 (531)
Q Consensus 65 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~ 144 (531)
.|++++|.+++++..+.... + + +...++++.|...|.+. ...|...|++++|...
T Consensus 4 ~~~~~eA~~~~~~a~k~~~~-~------~---~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~ 58 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYLKT-S------F---MKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAKDA 58 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHCC-C------S---SSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHccc-c------c---cCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHHHH
Confidence 35788999999888764332 1 0 11147788888887765 3466677888888888
Q ss_pred HHHHHHCCCCC-----ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCC-CcHHhHHHHHHHHHhcCChhHHHHH
Q 038190 145 LGRILRKVFSP-----DVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVI-PNVICYASIIDGLCKDGFVNKVRVL 218 (531)
Q Consensus 145 ~~~~~~~~~~~-----~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~ 218 (531)
|.+........ -..+|+.+..+|...|++++|+..|++........+.. .-..+++.+...|.. |++++|+..
T Consensus 59 ~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~ 137 (307)
T 2ifu_A 59 YLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHL 137 (307)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHH
Confidence 88776542111 13477788888889999999999998876542221100 123577888888888 999999999
Q ss_pred HHHHhhC----CCCC-CHhhHHHHHHHHHhcCChhhhhcchHHHHHHHHHHHhCCCCCCccccCC-HhhHHHHHHHHhcC
Q 038190 219 FLDMKGR----GIYP-DAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPD-VLSYCSIINSLCKD 292 (531)
Q Consensus 219 ~~~m~~~----g~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~ 292 (531)
|++..+. |-.. ...++..+...|...|++++|...+++++++...... .+. ...+..+..++...
T Consensus 138 ~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~---------~~~~~~~~~~~g~~~~~~ 208 (307)
T 2ifu_A 138 YQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMEN---------YPTCYKKCIAQVLVQLHR 208 (307)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC---------HHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCC---------hhHHHHHHHHHHHHHHHc
Confidence 9887643 1110 1456777888899999999999977777766543211 111 23566677778888
Q ss_pred CCHHHHHHHHHHHHhCCCCCC------HHHHHHHHHHHHhcCCHHHHHH
Q 038190 293 VLVDKAKELFLDMKSRGIIPD------VVVYSSLIDGYCLMGRIDDARK 335 (531)
Q Consensus 293 ~~~~~a~~~~~~~~~~~~~~~------~~~~~~ll~~~~~~g~~~~a~~ 335 (531)
|++++|...|++.. . .|+ ......++.++ ..|+.+.+..
T Consensus 209 g~~~~A~~~~~~al-~--~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 209 ADYVAAQKCVRESY-S--IPGFSGSEDCAALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp TCHHHHHHHHHHHT-T--STTSTTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred CCHHHHHHHHHHHh-C--CCCCCCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence 99999999999887 4 222 12234444444 4566655554
No 104
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.92 E-value=1.1e-06 Score=78.66 Aligned_cols=222 Identities=9% Similarity=-0.031 Sum_probs=159.7
Q ss_pred CHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccC--CHHHHHHHHHHHHhCCCCCCHhhHHHHHHHH----Hcc---CC
Q 038190 67 ELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKK--YYVNFICLSERLNTIGLLPDFVSLNILMNCF----CKM---IG 137 (531)
Q Consensus 67 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~--~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~----~~~---g~ 137 (531)
..++|+.+++.++..+|. +..+|+.--..+...+ ++++++++++.+.... +-+..+|+.-...+ ... ++
T Consensus 48 ~s~~aL~~t~~~L~~nP~-~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~~~~~l~~~~~ 125 (306)
T 3dra_A 48 YSERALHITELGINELAS-HYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQIMELNNNDFD 125 (306)
T ss_dssp CSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHHHHHTTTCCC
T ss_pred CCHHHHHHHHHHHHHCcH-HHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHHHHHhccccCC
Confidence 557899999999998776 6778888888888888 9999999999998875 44555677665555 445 78
Q ss_pred cchHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChH--HHHHHHHHHHHcCCCCCCCCcHHhHHHHHHHHHhcCC----
Q 038190 138 VSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFT--EASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGF---- 211 (531)
Q Consensus 138 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~--~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---- 211 (531)
+++++.+++.+++..+. +-.+|+.-..++.+.|.++ ++++.+++++..+ |. |..+|+.-...+...+.
T Consensus 126 ~~~EL~~~~~~l~~~pk-ny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d--~~---N~sAW~~R~~ll~~l~~~~~~ 199 (306)
T 3dra_A 126 PYREFDILEAMLSSDPK-NHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD--LK---NNSAWSHRFFLLFSKKHLATD 199 (306)
T ss_dssp THHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC--TT---CHHHHHHHHHHHHSSGGGCCH
T ss_pred HHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC--CC---CHHHHHHHHHHHHhccccchh
Confidence 89999999999987644 7888888888888888888 9999999999873 42 78888877777777666
Q ss_pred --hhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChhhhhcchHHHHHHHHHHHhCCCCCCccccCCHhhHHHHHHHH
Q 038190 212 --VNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSL 289 (531)
Q Consensus 212 --~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~ 289 (531)
++++++.++.+...... |...|+.+-..+.+.|+...... +....+...+. .-+.+...+..+..++
T Consensus 200 ~~~~eEl~~~~~aI~~~p~-n~SaW~y~~~ll~~~~~~~~~~~------~~~~~~~~~~~----~~~~s~~al~~la~~~ 268 (306)
T 3dra_A 200 NTIDEELNYVKDKIVKCPQ-NPSTWNYLLGIHERFDRSITQLE------EFSLQFVDLEK----DQVTSSFALETLAKIY 268 (306)
T ss_dssp HHHHHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCCGGGGH------HHHHTTEEGGG----TEESCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHhCCC-CccHHHHHHHHHHhcCCChHHHH------HHHHHHHhccC----CCCCCHHHHHHHHHHH
Confidence 77788888877765433 67777777666666665433221 13333322110 0134556666677777
Q ss_pred hcCCCHHHHHHHHHHHHh
Q 038190 290 CKDVLVDKAKELFLDMKS 307 (531)
Q Consensus 290 ~~~~~~~~a~~~~~~~~~ 307 (531)
.+.|+.++|.++++.+.+
T Consensus 269 ~~~~~~~~A~~~~~~l~~ 286 (306)
T 3dra_A 269 TQQKKYNESRTVYDLLKS 286 (306)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HccCCHHHHHHHHHHHHh
Confidence 777777777777777664
No 105
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.90 E-value=2.7e-07 Score=78.84 Aligned_cols=179 Identities=12% Similarity=0.065 Sum_probs=139.0
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC----CHHHHHHH
Q 038190 296 DKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIE----KVEEALSL 371 (531)
Q Consensus 296 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~~----~~~~a~~~ 371 (531)
.+|.+.|++..+.| +...+..+...|...+++++|...|++..+.| +...+..|...|.. + ++++|+.+
T Consensus 3 ~eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~ 75 (212)
T 3rjv_A 3 TEPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQL 75 (212)
T ss_dssp -CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHH
T ss_pred chHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHH
Confidence 35677888888774 77888889999999999999999999999875 67778888888887 6 89999999
Q ss_pred HHHHHhCCCCCCcccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc----CCChHHHHHHHHHhhhCCCC-CcHHHHHH
Q 038190 372 YGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCK----SWRLRSAWELFKKLPRYGPE-PNVVTYTV 446 (531)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~g~~-p~~~~~~~ 446 (531)
|++..+.| +...+..|...|.. .+++++|..+|++..+.|.. .++..+..
T Consensus 76 ~~~A~~~g-------------------------~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~ 130 (212)
T 3rjv_A 76 AEKAVEAG-------------------------SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQML 130 (212)
T ss_dssp HHHHHHTT-------------------------CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHH
T ss_pred HHHHHHCC-------------------------CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHH
Confidence 98887755 77888999999988 89999999999999986421 12778888
Q ss_pred HHHHHHH----cCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcc-C-----ChhHHHhhH
Q 038190 447 MICGLCI----EGGIEKAYDLLPDMEEKIRECLKAIELLHKMAKRYVKPDEITVSILEELLNKD-E-----NCHECMNLL 516 (531)
Q Consensus 447 l~~~~~~----~g~~~~A~~~~~~~~~~i~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g-----~~~~a~~~~ 516 (531)
|...|.. .+++++|++.|++. .+. ..+...+..|..+|... | ++++|...+
T Consensus 131 Lg~~y~~g~g~~~d~~~A~~~~~~A-----------------~~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~ 191 (212)
T 3rjv_A 131 LGLIYASGVHGPEDDVKASEYFKGS-----------------SSL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWL 191 (212)
T ss_dssp HHHHHHHTSSSSCCHHHHHHHHHHH-----------------HHT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHH
T ss_pred HHHHHHcCCCCCCCHHHHHHHHHHH-----------------HHc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHH
Confidence 8888888 77788887666554 333 22344566777777653 3 788999998
Q ss_pred HHhhhcchh
Q 038190 517 PSFLSRNQE 525 (531)
Q Consensus 517 ~~~~~~~~~ 525 (531)
++....+..
T Consensus 192 ~~A~~~g~~ 200 (212)
T 3rjv_A 192 NVSCLEGFD 200 (212)
T ss_dssp HHHHHHTCH
T ss_pred HHHHHcCCH
Confidence 887665543
No 106
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.90 E-value=5.5e-08 Score=87.58 Aligned_cols=181 Identities=12% Similarity=-0.001 Sum_probs=141.4
Q ss_pred CHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCcchHHHHHH
Q 038190 67 ELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALG 146 (531)
Q Consensus 67 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 146 (531)
..+.....+.... ..+...+..+...+.+.|++++|+..|++..+.. +-+...+..+..++.+.|++++|...++
T Consensus 101 ~~~~l~~~l~~~l----p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~ 175 (287)
T 3qou_A 101 PEEAIRALLDXVL----PREEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLX 175 (287)
T ss_dssp CHHHHHHHHHHHS----CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHT
T ss_pred CHHHHHHHHHHHc----CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHH
Confidence 3444445555442 2355677888888999999999999999998875 5577889999999999999999999999
Q ss_pred HHHHCCCCCChhhHH-HHHHHHHhcCChHHHHHHHHHHHHcCCCCCCCCcHHhHHHHHHHHHhcCChhHHHHHHHHHhhC
Q 038190 147 RILRKVFSPDVVTLG-CLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGR 225 (531)
Q Consensus 147 ~~~~~~~~~~~~~~~-~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 225 (531)
++.... |+..... .....+...++.++|+..|++.... .|+ +...+..+...+...|++++|...|.++.+.
T Consensus 176 ~~~~~~--p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~--~P~---~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~ 248 (287)
T 3qou_A 176 TIPLQD--QDTRYQGLVAQIELLXQAADTPEIQQLQQQVAE--NPE---DAALATQLALQLHQVGRNEEALELLFGHLRX 248 (287)
T ss_dssp TSCGGG--CSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHH--CTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hCchhh--cchHHHHHHHHHHHHhhcccCccHHHHHHHHhc--CCc---cHHHHHHHHHHHHHcccHHHHHHHHHHHHhc
Confidence 988764 4443333 2334467778888999999998886 553 7889999999999999999999999999876
Q ss_pred CCCC-CHhhHHHHHHHHHhcCChhhhhcchHHHHH
Q 038190 226 GIYP-DAFVYNSLIRVYCCAVNWEDAKGNTSAALE 259 (531)
Q Consensus 226 g~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~a~~ 259 (531)
.... +...+..+...+...|+.+++...+.+++.
T Consensus 249 ~p~~~~~~a~~~l~~~~~~~g~~~~a~~~~r~al~ 283 (287)
T 3qou_A 249 DLTAADGQTRXTFQEILAALGTGDALASXYRRQLY 283 (287)
T ss_dssp CTTGGGGHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred ccccccchHHHHHHHHHHHcCCCCcHHHHHHHHHH
Confidence 3221 266788999999999999999885555543
No 107
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.90 E-value=9.9e-09 Score=82.33 Aligned_cols=145 Identities=11% Similarity=-0.018 Sum_probs=112.9
Q ss_pred HHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCcchHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCC
Q 038190 93 LLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGK 172 (531)
Q Consensus 93 li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 172 (531)
|...+...|++++|+..+....... +-+...+..+...|.+.|++++|...|+++++..+. +..+|..+..+|...|+
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~~~-p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~~~ 80 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTPSP-RQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQER-DPKAHRFLGLLYELEEN 80 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSCSH-HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHcChHHHHHHHHHHhcccC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCc
Confidence 3445567789999999999987553 234556778899999999999999999999998644 78899999999999999
Q ss_pred hHHHHHHHHHHHHcCCCCCCCCcHHhHHHHHHHHHhcCChhHHHHH-HHHHhhCCCCCCHhhHHHHHHHHHhcC
Q 038190 173 FTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVL-FLDMKGRGIYPDAFVYNSLIRVYCCAV 245 (531)
Q Consensus 173 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~-~~~m~~~g~~p~~~~~~~li~~~~~~~ 245 (531)
+++|+..|++..+. .|+ +..+|..+...|.+.|++++|... +++..+... -+..+|......+...|
T Consensus 81 ~~~A~~~~~~al~~--~p~---~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P-~~~~~~~l~~~ll~~~G 148 (150)
T 4ga2_A 81 TDKAVECYRRSVEL--NPT---QKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFP-GSPAVYKLKEQLLDCEG 148 (150)
T ss_dssp HHHHHHHHHHHHHH--CTT---CHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHST-TCHHHHHHHHHHHHTCC
T ss_pred hHHHHHHHHHHHHh--CCC---CHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHhC
Confidence 99999999999987 553 788999999999999999876665 577776422 25566666555555544
No 108
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.90 E-value=1.3e-06 Score=78.30 Aligned_cols=225 Identities=7% Similarity=-0.019 Sum_probs=170.3
Q ss_pred CHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccC--CcchHHHHHHHHHHCCCCCChhhHHHHHHHH----Hhc---CC
Q 038190 102 YYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMI--GVSDAFVALGRILRKVFSPDVVTLGCLIRGL----CMQ---GK 172 (531)
Q Consensus 102 ~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g--~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~----~~~---g~ 172 (531)
..++|+++++.++..+ +-+..+|+.--.++...| ++++++..++.++...+. +..+|+.-..++ ... ++
T Consensus 48 ~s~~aL~~t~~~L~~n-P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk-~y~aW~~R~~iL~~~~~~l~~~~~ 125 (306)
T 3dra_A 48 YSERALHITELGINEL-ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEK-NYQIWNYRQLIIGQIMELNNNDFD 125 (306)
T ss_dssp CSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTT-CCHHHHHHHHHHHHHHHHTTTCCC
T ss_pred CCHHHHHHHHHHHHHC-cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcc-cHHHHHHHHHHHHHHHHhccccCC
Confidence 3468999999998875 445667888888888888 999999999999998654 667787766666 555 78
Q ss_pred hHHHHHHHHHHHHcCCCCCCCCcHHhHHHHHHHHHhcCChh--HHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChhhh
Q 038190 173 FTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVN--KVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDA 250 (531)
Q Consensus 173 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a 250 (531)
+++++.+++++... .| .+..+|+.-.-.+.+.|.++ ++++.++++.+.... |...|+.-...+...+... .
T Consensus 126 ~~~EL~~~~~~l~~--~p---kny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~-N~sAW~~R~~ll~~l~~~~-~ 198 (306)
T 3dra_A 126 PYREFDILEAMLSS--DP---KNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLK-NNSAWSHRFFLLFSKKHLA-T 198 (306)
T ss_dssp THHHHHHHHHHHHH--CT---TCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHSSGGGC-C
T ss_pred HHHHHHHHHHHHHh--CC---CCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccc-h
Confidence 99999999999987 45 28889998888888889988 999999999987554 6777776665555555411 1
Q ss_pred hcchHHHHHHHHHHHhCCCCCCccccCCHhhHHHHHHHHhcCCCHHH-HHHHHHHHHhCC--CCCCHHHHHHHHHHHHhc
Q 038190 251 KGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDK-AKELFLDMKSRG--IIPDVVVYSSLIDGYCLM 327 (531)
Q Consensus 251 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~-a~~~~~~~~~~~--~~~~~~~~~~ll~~~~~~ 327 (531)
...++++++.++...... +-|...|+-.-..+.+.|+... +..+..++.+.+ -..+...+..+..+|.+.
T Consensus 199 ~~~~~eEl~~~~~aI~~~-------p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~ 271 (306)
T 3dra_A 199 DNTIDEELNYVKDKIVKC-------PQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQ 271 (306)
T ss_dssp HHHHHHHHHHHHHHHHHC-------SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHT
T ss_pred hhhHHHHHHHHHHHHHhC-------CCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHcc
Confidence 123555666777777765 4577888888888877777443 445666555432 134678888889999999
Q ss_pred CCHHHHHHHHHHHHh
Q 038190 328 GRIDDARKLFVSIES 342 (531)
Q Consensus 328 g~~~~a~~~~~~~~~ 342 (531)
|+.++|.++++.+.+
T Consensus 272 ~~~~~A~~~~~~l~~ 286 (306)
T 3dra_A 272 KKYNESRTVYDLLKS 286 (306)
T ss_dssp TCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHh
Confidence 999999999999886
No 109
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.90 E-value=1.7e-08 Score=83.52 Aligned_cols=163 Identities=10% Similarity=-0.019 Sum_probs=126.5
Q ss_pred hhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCcchHHHHHHHHHHCCCCCChhhHHHHHHH-
Q 038190 88 PSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRG- 166 (531)
Q Consensus 88 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~- 166 (531)
..+..+...+.+.|++++|+..|++..+.. +.+...+..+..++...|++++|...++.+....+ +...+..+...
T Consensus 7 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p--~~~~~~~~~~~~ 83 (176)
T 2r5s_A 7 EQLLKQVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ--DNSYKSLIAKLE 83 (176)
T ss_dssp TTHHHHHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC--CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC--ChHHHHHHHHHH
Confidence 356667778889999999999999987764 45678899999999999999999999999877643 44433332222
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCCCCCcHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCC-CHhhHHHHHHHHHhcC
Q 038190 167 LCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYP-DAFVYNSLIRVYCCAV 245 (531)
Q Consensus 167 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~~ 245 (531)
+...++...|+..|++.... .|+ +...+..+...+...|++++|...|+++.+....+ +...+..+...+...|
T Consensus 84 ~~~~~~~~~a~~~~~~al~~--~P~---~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g 158 (176)
T 2r5s_A 84 LHQQAAESPELKRLEQELAA--NPD---NFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALG 158 (176)
T ss_dssp HHHHHTSCHHHHHHHHHHHH--STT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHC
T ss_pred HHhhcccchHHHHHHHHHHh--CCC---CHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhC
Confidence 22333444578899998876 453 68899999999999999999999999998864432 3567888999999999
Q ss_pred ChhhhhcchHHHH
Q 038190 246 NWEDAKGNTSAAL 258 (531)
Q Consensus 246 ~~~~a~~~~~~a~ 258 (531)
+.++|...+.+++
T Consensus 159 ~~~~A~~~y~~al 171 (176)
T 2r5s_A 159 QGNAIASKYRRQL 171 (176)
T ss_dssp SSCHHHHHHHHHH
T ss_pred CCCcHHHHHHHHH
Confidence 9999998555543
No 110
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.88 E-value=3.9e-07 Score=78.67 Aligned_cols=183 Identities=10% Similarity=-0.034 Sum_probs=127.1
Q ss_pred HhhHHHHHHHHhcCCCHHHHHHHHHHHHhCCCC-C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCH--HHHHH
Q 038190 279 VLSYCSIINSLCKDVLVDKAKELFLDMKSRGII-P-DVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDT--SSYNT 354 (531)
Q Consensus 279 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~--~~~~~ 354 (531)
...+..+...+...|++++|...|+.+.+.... + ....+..+..+|.+.|++++|...|+++.+..+.... ..+..
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~ 83 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYM 83 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHH
Confidence 345566777889999999999999999875321 1 1356778889999999999999999999987543211 23444
Q ss_pred HHHHHHh------------------cCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 038190 355 LINSYSK------------------IEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGL 416 (531)
Q Consensus 355 li~~~~~------------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 416 (531)
+..++.. .|++++|...|+++.+. .|+......+......+... .......+...|
T Consensus 84 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~P~~~~a~~a~~~l~~~~~~----~~~~~~~~a~~~ 157 (225)
T 2yhc_A 84 RGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG--YPNSQYTTDATKRLVFLKDR----LAKYEYSVAEYY 157 (225)
T ss_dssp HHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT--CTTCTTHHHHHHHHHHHHHH----HHHHHHHHHHHH
T ss_pred HHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH--CcCChhHHHHHHHHHHHHHH----HHHHHHHHHHHH
Confidence 4445543 56778888888887763 34433333333222222210 011224567889
Q ss_pred HcCCChHHHHHHHHHhhhCCCCCc----HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 038190 417 CKSWRLRSAWELFKKLPRYGPEPN----VVTYTVMICGLCIEGGIEKAYDLLPDMEE 469 (531)
Q Consensus 417 ~~~g~~~~A~~~~~~~~~~g~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 469 (531)
.+.|++++|...|+++++. .|+ ...+..+..+|.+.|++++|++.++.+..
T Consensus 158 ~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~ 212 (225)
T 2yhc_A 158 TERGAWVAVVNRVEGMLRD--YPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA 212 (225)
T ss_dssp HHHTCHHHHHHHHHHHHHH--STTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHcCcHHHHHHHHHHHHHH--CcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHh
Confidence 9999999999999999874 343 25678889999999999999888876543
No 111
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.88 E-value=3.3e-08 Score=100.45 Aligned_cols=174 Identities=9% Similarity=-0.075 Sum_probs=141.3
Q ss_pred HccCCHHHHHHHHHHHH--------hCCCCCCHhhHHHHHHHHHccCCcchHHHHHHHHHHCCCCCChhhHHHHHHHHHh
Q 038190 98 AGKKYYVNFICLSERLN--------TIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCM 169 (531)
Q Consensus 98 ~~~~~~~~a~~~~~~m~--------~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 169 (531)
...|++++|++.+++.. +.. +.+...+..+..++.+.|++++|...|+++++..+. +...|..+..+|..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERVGW-RWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcc-hHHHHHHHHHHHHH
Confidence 78899999999999998 443 456678889999999999999999999999987543 77899999999999
Q ss_pred cCChHHHHHHHHHHHHcCCCCCCCCcHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChhh
Q 038190 170 QGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWED 249 (531)
Q Consensus 170 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~ 249 (531)
.|++++|+..|++..+. .|+ +...|..+..++.+.|++++ ...|++..+.... +...|..+..++.+.|++++
T Consensus 480 ~g~~~~A~~~~~~al~l--~P~---~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~ 552 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDT--FPG---ELAPKLALAATAELAGNTDE-HKFYQTVWSTNDG-VISAAFGLARARSAEGDRVG 552 (681)
T ss_dssp HTCHHHHHHHHHHHHHH--STT---CSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHH
T ss_pred cCCHHHHHHHHHHHHHh--CCC---ChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCc-hHHHHHHHHHHHHHcCCHHH
Confidence 99999999999999987 453 67889999999999999999 9999999875332 67788889999999999998
Q ss_pred hhcchHHHHHHHHHHHhCCCCCCccccCCHhhHHHHHHHHhcCCC
Q 038190 250 AKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVL 294 (531)
Q Consensus 250 a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~ 294 (531)
|.. .|++....+ +-+...+..+..++...++
T Consensus 553 A~~-------~~~~al~l~-------P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 553 AVR-------TLDEVPPTS-------RHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHH-------HHHTSCTTS-------TTHHHHHHHHHHHTC----
T ss_pred HHH-------HHHhhcccC-------cccHHHHHHHHHHHHccCC
Confidence 888 666665543 2235567777777766554
No 112
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.88 E-value=1.1e-07 Score=82.28 Aligned_cols=158 Identities=7% Similarity=-0.050 Sum_probs=116.6
Q ss_pred cCCHHHHHHHHHHHHHcCCCCC--hhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCH---hhHHHHHHHHHc-----
Q 038190 65 EVELNDALCFFNYMIHMQPTPF--MPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDF---VSLNILMNCFCK----- 134 (531)
Q Consensus 65 ~g~~~~A~~~~~~~~~~~~~~~--~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~---~~~~~li~~~~~----- 134 (531)
.|++++|+..|+.+.+..|... ..++..+..++.+.|++++|+..|+++.+.. +-+. .++..+..++..
T Consensus 17 ~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~-P~~~~~~~a~~~~g~~~~~~~~~~ 95 (225)
T 2yhc_A 17 DGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN-PTHPNIDYVMYMRGLTNMALDDSA 95 (225)
T ss_dssp HTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTHHHHHHHHHHHHHHHHC--
T ss_pred cCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC-cCCCcHHHHHHHHHHHHHhhhhhh
Confidence 4699999999999998766422 3578888899999999999999999998764 2122 244444544443
Q ss_pred -------------cCCcchHHHHHHHHHHCCCCCChhhH-----------------HHHHHHHHhcCChHHHHHHHHHHH
Q 038190 135 -------------MIGVSDAFVALGRILRKVFSPDVVTL-----------------GCLIRGLCMQGKFTEASGLFTKFV 184 (531)
Q Consensus 135 -------------~g~~~~a~~~~~~~~~~~~~~~~~~~-----------------~~li~~~~~~g~~~~a~~~~~~~~ 184 (531)
.|++++|...|+++++..+. +..++ ..+...|.+.|++++|+..|++++
T Consensus 96 ~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~-~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l 174 (225)
T 2yhc_A 96 LQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPN-SQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGML 174 (225)
T ss_dssp ------------CCHHHHHHHHHHHHHHTTCTT-CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred hhhhhccchhhcCcHHHHHHHHHHHHHHHHCcC-ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHH
Confidence 57899999999999987433 33333 234567788899999999999988
Q ss_pred HcCCCCCCCCcHHhHHHHHHHHHhcCChhHHHHHHHHHhhCC
Q 038190 185 AFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRG 226 (531)
Q Consensus 185 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g 226 (531)
.. .|+......++..+..++.+.|++++|.+.++.+...+
T Consensus 175 ~~--~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~ 214 (225)
T 2yhc_A 175 RD--YPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANS 214 (225)
T ss_dssp HH--STTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCC
T ss_pred HH--CcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC
Confidence 76 33211123568888889999999999999999887763
No 113
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.87 E-value=4.5e-08 Score=88.16 Aligned_cols=153 Identities=11% Similarity=-0.036 Sum_probs=127.6
Q ss_pred CcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHH-HHHHHHHccCCcchHH
Q 038190 64 GEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLN-ILMNCFCKMIGVSDAF 142 (531)
Q Consensus 64 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~-~li~~~~~~g~~~~a~ 142 (531)
..|++++|...|+++.+..|. +..++..+...+.+.|++++|+..++++.... |+..... .....+.+.++.+.|.
T Consensus 129 ~~g~~~~A~~~~~~al~~~P~-~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~~~~~~~l~~~~~~~~a~ 205 (287)
T 3qou_A 129 QESNYTDALPLLXDAWQLSNQ-NGEIGLLLAETLIALNRSEDAEAVLXTIPLQD--QDTRYQGLVAQIELLXQAADTPEI 205 (287)
T ss_dssp HTTCHHHHHHHHHHHHHHTTS-CHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGG--CSHHHHHHHHHHHHHHHHTSCHHH
T ss_pred hCCCHHHHHHHHHHHHHhCCc-chhHHHHHHHHHHHCCCHHHHHHHHHhCchhh--cchHHHHHHHHHHHHhhcccCccH
Confidence 356999999999999998776 77889999999999999999999999987763 4544333 3333466788899999
Q ss_pred HHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCCCcHHhHHHHHHHHHhcCChhHHHHHHHHH
Q 038190 143 VALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDM 222 (531)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m 222 (531)
..+++.....+. +...+..+...+...|++++|+..|.++... .|+. .+...+..++..+...|+.++|...|++.
T Consensus 206 ~~l~~al~~~P~-~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~--~p~~-~~~~a~~~l~~~~~~~g~~~~a~~~~r~a 281 (287)
T 3qou_A 206 QQLQQQVAENPE-DAALATQLALQLHQVGRNEEALELLFGHLRX--DLTA-ADGQTRXTFQEILAALGTGDALASXYRRQ 281 (287)
T ss_dssp HHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTG-GGGHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHhcCCc-cHHHHHHHHHHHHHcccHHHHHHHHHHHHhc--cccc-ccchHHHHHHHHHHHcCCCCcHHHHHHHH
Confidence 999999988643 7789999999999999999999999999987 3321 13778999999999999999999998876
Q ss_pred h
Q 038190 223 K 223 (531)
Q Consensus 223 ~ 223 (531)
.
T Consensus 282 l 282 (287)
T 3qou_A 282 L 282 (287)
T ss_dssp H
T ss_pred H
Confidence 4
No 114
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.85 E-value=7.4e-06 Score=79.42 Aligned_cols=367 Identities=11% Similarity=-0.031 Sum_probs=191.5
Q ss_pred cC-CHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCcchHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCC-hHHHH
Q 038190 100 KK-YYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGK-FTEAS 177 (531)
Q Consensus 100 ~~-~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~-~~~a~ 177 (531)
.| ++..|..+|+++... -|. |+++.+..+|++.+.. .|++..|...+....+.++ .+...
T Consensus 7 ~~~~i~~aR~vyer~l~~--~P~--------------~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~i~ 68 (493)
T 2uy1_A 7 MGVELSSPSAIMEHARRL--YMS--------------KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFKLY 68 (493)
T ss_dssp -----CCHHHHHHHHHHH--HHT--------------TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----CTH
T ss_pred cCcchHHHHHHHHHHHHH--CCC--------------CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHHHH
Confidence 45 377777777777654 233 7899999999999885 5799999999988877764 45677
Q ss_pred HHHHHHHHc-CCCCCCCCcHHhHHHHHHHHH----hcCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChhhhh-
Q 038190 178 GLFTKFVAF-DCRPNVIPNVICYASIIDGLC----KDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAK- 251 (531)
Q Consensus 178 ~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~----~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~- 251 (531)
.+|+..... |.++ .+...|...+..+. ..++.+.+..+|++.......--...|...... ........+.
T Consensus 69 ~~fe~al~~vg~d~---~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~f-E~~~~~~~~~~ 144 (493)
T 2uy1_A 69 EVYEFTLGQFENYW---DSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENF-ELELNKITGKK 144 (493)
T ss_dssp HHHHHHHHHSTTCT---TCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHH-HHHHCHHHHHH
T ss_pred HHHHHHHHHcCCCc---ccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHH-HHHhccccHHH
Confidence 888887764 4344 36678888887654 346788999999999874221112222222211 1111111111
Q ss_pred ------cchHHHHHHHHHHHhCCCCCCccccCCHhhHHHHHHHHhcCC--C-----HHHHHHHHHHHHhCCCCCCHHHHH
Q 038190 252 ------GNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDV--L-----VDKAKELFLDMKSRGIIPDVVVYS 318 (531)
Q Consensus 252 ------~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~--~-----~~~a~~~~~~~~~~~~~~~~~~~~ 318 (531)
..+..|..+++.+...- ...+...|...+.--...+ - .+.+..+|+++.... +.+...|.
T Consensus 145 ~~~~~~~~y~~ar~~y~~~~~~~------~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~-p~~~~lW~ 217 (493)
T 2uy1_A 145 IVGDTLPIFQSSFQRYQQIQPLI------RGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSF-YYAEEVYF 217 (493)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH------HTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHHHHHH------hhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcC-CCCHHHHH
Confidence 12222333444333211 0113345555554432221 1 345677888888753 44677888
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHH
Q 038190 319 SLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLH 398 (531)
Q Consensus 319 ~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 398 (531)
..+..+.+.|+.+.|..+|++.... + .+...|. .|....+.++. ++.+.+.-..... +.+ ..
T Consensus 218 ~ya~~~~~~~~~~~ar~i~erAi~~-P-~~~~l~~----~y~~~~e~~~~---~~~l~~~~~~~~~---~~~-----~~- 279 (493)
T 2uy1_A 218 FYSEYLIGIGQKEKAKKVVERGIEM-S-DGMFLSL----YYGLVMDEEAV---YGDLKRKYSMGEA---ESA-----EK- 279 (493)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH-C-CSSHHHH----HHHHHTTCTHH---HHHHHHHTC------------------
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhC-C-CcHHHHH----HHHhhcchhHH---HHHHHHHHHhhcc---chh-----hh-
Confidence 8888888899999999999999887 2 2333332 22221111111 2222211000000 000 00
Q ss_pred hCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHH-------
Q 038190 399 NTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCI-EGGIEKAYDLLPDMEEK------- 470 (531)
Q Consensus 399 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~------- 470 (531)
.. .......|...+..+.+.++.+.|..+|+++ +. ...+...|......-.. .++.+.|..+|+...+.
T Consensus 280 ~~-~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~ 356 (493)
T 2uy1_A 280 VF-SKELDLLRINHLNYVLKKRGLELFRKLFIEL-GN-EGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLL 356 (493)
T ss_dssp -C-HHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TT-SCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHH
T ss_pred hc-ccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hC-CCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHH
Confidence 00 0001233444455544555555566666555 21 01122233221111111 22455555555554442
Q ss_pred ----------HhhHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChhHHHhhHHHhhh
Q 038190 471 ----------IRECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLLPSFLS 521 (531)
Q Consensus 471 ----------i~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 521 (531)
+++.+.|+.+|+.+. .....|..++..-...|+.+.+..++++...
T Consensus 357 ~~~yid~e~~~~~~~~aR~l~er~~-----k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 357 KEEFFLFLLRIGDEENARALFKRLE-----KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHSC-----CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 134455555555541 2466677777766777888888877776553
No 115
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.85 E-value=5.6e-08 Score=88.56 Aligned_cols=204 Identities=9% Similarity=-0.036 Sum_probs=143.4
Q ss_pred cCCcchHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCCCcHHhHHHHHHHHHhcCChhH
Q 038190 135 MIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNK 214 (531)
Q Consensus 135 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 214 (531)
.|++++|..++++..+.... . + +...++++.|...|.+. ...|...|++++
T Consensus 4 ~~~~~eA~~~~~~a~k~~~~-~------~---~~~~~~~~~A~~~~~~a-------------------~~~~~~~g~~~~ 54 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYLKT-S------F---MKWKPDYDSAASEYAKA-------------------AVAFKNAKQLEQ 54 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHCC-C------S---SSCSCCHHHHHHHHHHH-------------------HHHHHHTTCHHH
T ss_pred cchHHHHHHHHHHHHHHccc-c------c---cCCCCCHHHHHHHHHHH-------------------HHHHHHcCCHHH
Confidence 46777888888877654211 1 0 11146677777666554 345677889999
Q ss_pred HHHHHHHHhhC----CCCC-CHhhHHHHHHHHHhcCChhhhhcchHHHHHHHHHHHhCCCCCCccccCCHhhHHHHHHHH
Q 038190 215 VRVLFLDMKGR----GIYP-DAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSL 289 (531)
Q Consensus 215 a~~~~~~m~~~----g~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~ 289 (531)
|...|.+..+. +-.. -..+|+.+...|...|++++|...+++|++++..... ...-..++..+...|
T Consensus 55 A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~--------~~~~a~~~~~lg~~~ 126 (307)
T 2ifu_A 55 AKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGT--------PDTAAMALDRAGKLM 126 (307)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTC--------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCC--------HHHHHHHHHHHHHHH
Confidence 98888876542 1111 1346778888899999999999988888887754211 111245788888999
Q ss_pred hcCCCHHHHHHHHHHHHhCCCC----C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc----CCCCC-HHHHHHHHHHH
Q 038190 290 CKDVLVDKAKELFLDMKSRGII----P-DVVVYSSLIDGYCLMGRIDDARKLFVSIESE----GCIPD-TSSYNTLINSY 359 (531)
Q Consensus 290 ~~~~~~~~a~~~~~~~~~~~~~----~-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~----g~~p~-~~~~~~li~~~ 359 (531)
.. |++++|+..|++..+.... . ...++..+...|.+.|++++|...|++..+. +..+. ...+..+..++
T Consensus 127 ~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~ 205 (307)
T 2ifu_A 127 EP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQ 205 (307)
T ss_dssp TT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred Hc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHH
Confidence 88 9999999999987653111 0 1457888889999999999999999998763 11111 23566677788
Q ss_pred HhcCCHHHHHHHHHHHH
Q 038190 360 SKIEKVEEALSLYGEMI 376 (531)
Q Consensus 360 ~~~~~~~~a~~~~~~~~ 376 (531)
...|++++|...|++..
T Consensus 206 ~~~g~~~~A~~~~~~al 222 (307)
T 2ifu_A 206 LHRADYVAAQKCVRESY 222 (307)
T ss_dssp HHTTCHHHHHHHHHHHT
T ss_pred HHcCCHHHHHHHHHHHh
Confidence 88899999999999987
No 116
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.75 E-value=1.4e-07 Score=94.13 Aligned_cols=150 Identities=13% Similarity=-0.014 Sum_probs=112.1
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCcchHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHH
Q 038190 100 KKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGL 179 (531)
Q Consensus 100 ~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 179 (531)
.|++++|++.+++..+.. +.+...+..+...+...|++++|...|++.++..+. +..++..+..+|...|++++|+..
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPG-HPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTT-CHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHH
Confidence 478899999999998764 446788999999999999999999999999987543 678899999999999999999999
Q ss_pred HHHHHHcCCCCCCCCcHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhc---CChhhhhcchHH
Q 038190 180 FTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCA---VNWEDAKGNTSA 256 (531)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~---~~~~~a~~~~~~ 256 (531)
|++..+. .|+ +...+..+...|...|++++|.+.|++..+... .+...+..+...+... |+.++|...+++
T Consensus 80 ~~~al~~--~p~---~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~ 153 (568)
T 2vsy_A 80 LQQASDA--APE---HPGIALWLGHALEDAGQAEAAAAAYTRAHQLLP-EEPYITAQLLNWRRRLCDWRALDVLSAQVRA 153 (568)
T ss_dssp HHHHHHH--CTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCTTHHHHHHHHHH
T ss_pred HHHHHhc--CCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhhccccHHHHHHHHHH
Confidence 9999986 443 678999999999999999999999999887532 2577888889999999 888888874433
Q ss_pred H
Q 038190 257 A 257 (531)
Q Consensus 257 a 257 (531)
+
T Consensus 154 a 154 (568)
T 2vsy_A 154 A 154 (568)
T ss_dssp H
T ss_pred H
Confidence 3
No 117
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.72 E-value=5.6e-06 Score=74.69 Aligned_cols=170 Identities=12% Similarity=0.025 Sum_probs=123.8
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHhCCC-CCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-CC----HHH
Q 038190 282 YCSIINSLCKDVLVDKAKELFLDMKSRGI-IPDV----VVYSSLIDGYCLMGRIDDARKLFVSIESEGCI-PD----TSS 351 (531)
Q Consensus 282 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~-p~----~~~ 351 (531)
+...+..+...|++++|..++++..+... .|+. ..+..+...+...|++++|...|++..+.... ++ ..+
T Consensus 78 l~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~ 157 (293)
T 3u3w_A 78 FKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYI 157 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHH
Confidence 33446778899999999999999887532 2221 13344666777788999999999999874322 22 236
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHcCCChHHHHHHHH
Q 038190 352 YNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFE-LDLTVFNCLVDGLCKSWRLRSAWELFK 430 (531)
Q Consensus 352 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~ 430 (531)
++.+...|...|++++|...|+++.+. ++... +.. ....+|..+...|.+.|++++|..+++
T Consensus 158 ~~~lg~~y~~~g~~~~A~~~~~~al~~---------------~~~~~--~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~ 220 (293)
T 3u3w_A 158 ENAIANIYAENGYLKKGIDLFEQILKQ---------------LEALH--DNEEFDVKVRYNHAKALYLDSRYEESLYQVN 220 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH---------------HHHSS--CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH---------------HHhcc--cchhHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 889999999999999999999988641 00000 001 133478899999999999999999999
Q ss_pred HhhhC----CCCCc-HHHHHHHHHHHHHcC-CHHHHHHHHHHHH
Q 038190 431 KLPRY----GPEPN-VVTYTVMICGLCIEG-GIEKAYDLLPDME 468 (531)
Q Consensus 431 ~~~~~----g~~p~-~~~~~~l~~~~~~~g-~~~~A~~~~~~~~ 468 (531)
+..+. +..+. ..+|..+..+|...| ++++|++.+++..
T Consensus 221 ~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al 264 (293)
T 3u3w_A 221 KAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence 88752 22222 678889999999999 4799998886543
No 118
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.71 E-value=1.9e-05 Score=71.59 Aligned_cols=172 Identities=8% Similarity=-0.050 Sum_probs=138.1
Q ss_pred CHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccC-CHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcc-C-CcchHHH
Q 038190 67 ELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKK-YYVNFICLSERLNTIGLLPDFVSLNILMNCFCKM-I-GVSDAFV 143 (531)
Q Consensus 67 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~-~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~-g-~~~~a~~ 143 (531)
..++|+.+++.++..+|. +..+|+.--..+...| ++++++.+++.+.... +-+..+|+.-..++... + ++++++.
T Consensus 69 ~se~AL~lt~~~L~~nP~-~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~l~~~~~~~EL~ 146 (349)
T 3q7a_A 69 KSERALELTEIIVRMNPA-HYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDRISPQDPVSEIE 146 (349)
T ss_dssp CSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHCCSCCHHHHH
T ss_pred CCHHHHHHHHHHHHhCch-hHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhcCCChHHHHH
Confidence 567899999999998887 7788998888888888 5999999999999886 55777888888777776 7 8999999
Q ss_pred HHHHHHHCCCCCChhhHHHHHHHHHhcCChH--------HHHHHHHHHHHcCCCCCCCCcHHhHHHHHHHHHhcCC----
Q 038190 144 ALGRILRKVFSPDVVTLGCLIRGLCMQGKFT--------EASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGF---- 211 (531)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~--------~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---- 211 (531)
+++.+++..+. |..+|+....++.+.|.++ ++++.++++++. .|. |..+|+.....+.+.+.
T Consensus 147 ~~~k~L~~dpk-Ny~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~--dp~---N~SAW~~R~~lL~~l~~~~~~ 220 (349)
T 3q7a_A 147 YIHGSLLPDPK-NYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRV--DGR---NNSAWGWRWYLRVSRPGAETS 220 (349)
T ss_dssp HHHHHTSSCTT-CHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHH--CTT---CHHHHHHHHHHHTTSTTCCCC
T ss_pred HHHHHHHhCCC-CHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHh--CCC---CHHHHHHHHHHHHhccccccc
Confidence 99999987643 7788887777777766666 899999999987 442 88899999888888876
Q ss_pred ---hhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCh
Q 038190 212 ---VNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNW 247 (531)
Q Consensus 212 ---~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~ 247 (531)
++++++.++++...... |...|+-+-..+.+.|..
T Consensus 221 ~~~~~eELe~~~~aI~~~P~-n~SaW~Ylr~Ll~~~~~~ 258 (349)
T 3q7a_A 221 SRSLQDELIYILKSIHLIPH-NVSAWNYLRGFLKHFSLP 258 (349)
T ss_dssp HHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCC
T ss_pred hHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCCC
Confidence 68888888888775433 777777666666555543
No 119
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.70 E-value=3.6e-07 Score=70.54 Aligned_cols=109 Identities=9% Similarity=0.005 Sum_probs=83.2
Q ss_pred hhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCcchHHHHHHHHHHCCCCCChhhHHHHHHHH
Q 038190 88 PSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGL 167 (531)
Q Consensus 88 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 167 (531)
..|......+.+.|++++|++.|++.++.. +.+..+|..+..++.+.|++++|+..++++++..+. +..+|..+..+|
T Consensus 14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~ 91 (126)
T 4gco_A 14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSK-FIKGYIRKAACL 91 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhh-hhHHHHHHHHHH
Confidence 466777778888888888888888887765 556778888888888888888888888888877533 667788888888
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCCCCCcHHhHHHHH
Q 038190 168 CMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASII 203 (531)
Q Consensus 168 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~ 203 (531)
...|++++|+..|++..+. .|+ +..++..+.
T Consensus 92 ~~~~~~~~A~~~~~~al~l--~P~---~~~a~~~l~ 122 (126)
T 4gco_A 92 VAMREWSKAQRAYEDALQV--DPS---NEEAREGVR 122 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHH--CTT---CHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHH--CcC---CHHHHHHHH
Confidence 8888888888888888876 443 555555443
No 120
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.70 E-value=6.7e-06 Score=74.45 Aligned_cols=244 Identities=12% Similarity=0.046 Sum_probs=171.9
Q ss_pred CHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccC-CcchHHHHH
Q 038190 67 ELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMI-GVSDAFVAL 145 (531)
Q Consensus 67 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g-~~~~a~~~~ 145 (531)
++.+|...|..+...+ +..++|+++++.++..+ +-+..+|+.--.++...| ++++++..+
T Consensus 52 ~y~~~~~~~r~~~~~~------------------e~se~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~ 112 (349)
T 3q7a_A 52 EYKDAMDYFRAIAAKE------------------EKSERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLM 112 (349)
T ss_dssp HHHHHHHHHHHHHHTT------------------CCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhC------------------CCCHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 5666666665554433 34468999999998875 446667888888888888 599999999
Q ss_pred HHHHHCCCCCChhhHHHHHHHHHhc-C-ChHHHHHHHHHHHHcCCCCCCCCcHHhHHHHHHHHHhcCChh--------HH
Q 038190 146 GRILRKVFSPDVVTLGCLIRGLCMQ-G-KFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVN--------KV 215 (531)
Q Consensus 146 ~~~~~~~~~~~~~~~~~li~~~~~~-g-~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--------~a 215 (531)
+.++...+. +..+|+.-..++... + ++++++.+++++... .| .+..+|+.-.-.+.+.|.++ ++
T Consensus 113 ~~~L~~nPK-ny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~--dp---kNy~AW~~R~wvl~~l~~~~~~~~~~~~eE 186 (349)
T 3q7a_A 113 NEFAVQNLK-SYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLP--DP---KNYHTWAYLHWLYSHFSTLGRISEAQWGSE 186 (349)
T ss_dssp HHHHHTTCC-CHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSS--CT---TCHHHHHHHHHHHHHHHHTTCCCHHHHHHH
T ss_pred HHHHHhCCC-cHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHh--CC---CCHHHHHHHHHHHHHhccccccchhhHHHH
Confidence 999998755 778999888888777 7 899999999999876 44 27888887777776666666 89
Q ss_pred HHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChhhhhcchHHHHHHHHHHHhCCCCCCccccCCHhhHHHHHHHHhcCCCH
Q 038190 216 RVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLV 295 (531)
Q Consensus 216 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 295 (531)
++.++++.+.... |...|+.....+.+.+........++++++.+....... +-|...|+-+-..+.+.|+.
T Consensus 187 Le~~~k~I~~dp~-N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~-------P~n~SaW~Ylr~Ll~~~~~~ 258 (349)
T 3q7a_A 187 LDWCNEMLRVDGR-NNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLI-------PHNVSAWNYLRGFLKHFSLP 258 (349)
T ss_dssp HHHHHHHHHHCTT-CHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHhCCC-CHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHhcCCC
Confidence 9999999886544 777888777777776653222334566677887777765 45677777666666655543
Q ss_pred --------------------HHHHHHHHHHHhCC-----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 038190 296 --------------------DKAKELFLDMKSRG-----IIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESE 343 (531)
Q Consensus 296 --------------------~~a~~~~~~~~~~~-----~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 343 (531)
.........+...+ -.+.......++..|...|+.++|.++++.+.+.
T Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~ 331 (349)
T 3q7a_A 259 LVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSE 331 (349)
T ss_dssp SGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred cccccccccccccccccccchhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Confidence 22222222222221 1356777888888888888888888888887643
No 121
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.70 E-value=2.4e-06 Score=77.17 Aligned_cols=171 Identities=10% Similarity=-0.005 Sum_probs=122.2
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCCCCCCcH----HhHHHHHHHHHhcCChhHHHHHHHHHhhCCCC-CC----Hh
Q 038190 162 CLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNV----ICYASIIDGLCKDGFVNKVRVLFLDMKGRGIY-PD----AF 232 (531)
Q Consensus 162 ~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~-p~----~~ 232 (531)
..+..+...|++++|..++++....... .++. ..+..+...+...+++++|...|++....... ++ ..
T Consensus 80 ~~i~~~~~~~~y~~a~~~~~~~l~~~~~---~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 3u3w_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEEY---HPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCC---CHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhccccC---ChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHH
Confidence 3467788899999999999998874211 1232 23445777777888999999999998874222 22 23
Q ss_pred hHHHHHHHHHhcCChhhhhcchHHHHHHHHHHHhCCCCCCccccCCHhhHHHHHHHHhcCCCHHHHHHHHHHHHhC----
Q 038190 233 VYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSR---- 308 (531)
Q Consensus 233 ~~~~li~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---- 308 (531)
+++.+...|...|++++|...+++|++.++.... . ......++..+...|.+.|++++|...+++..+.
T Consensus 157 ~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~-~------~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~ 229 (293)
T 3u3w_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHD-N------EEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRI 229 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSC-C------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhccc-c------hhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHc
Confidence 6888889999999999999988888877655311 1 1223447888889999999999999988877643
Q ss_pred CCCCC-HHHHHHHHHHHHhcC-CHHHHHHHHHHHHh
Q 038190 309 GIIPD-VVVYSSLIDGYCLMG-RIDDARKLFVSIES 342 (531)
Q Consensus 309 ~~~~~-~~~~~~ll~~~~~~g-~~~~a~~~~~~~~~ 342 (531)
+..+. ..+|..+..+|.+.| ++++|.+.+++...
T Consensus 230 ~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 230 NSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp TBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 22222 566777777888888 46888887777653
No 122
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.69 E-value=1.2e-06 Score=74.89 Aligned_cols=133 Identities=11% Similarity=-0.153 Sum_probs=106.3
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCcchHHHHHHHHHHCCCCCChhhHHHHHHHHH
Q 038190 89 SFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLC 168 (531)
Q Consensus 89 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 168 (531)
.+..+...+...|++++|+..|++.. .|+..++..+..++...|++++|...|++.++..+ .+..++..+..+|.
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~lg~~~~ 82 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDK-HLAVAYFQRGMLYY 82 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-cchHHHHHHHHHHH
Confidence 34556667788899999999998774 56788899999999999999999999999888753 36778888999999
Q ss_pred hcCChHHHHHHHHHHHHcCCCCC----------CC-CcHHhHHHHHHHHHhcCChhHHHHHHHHHhhCC
Q 038190 169 MQGKFTEASGLFTKFVAFDCRPN----------VI-PNVICYASIIDGLCKDGFVNKVRVLFLDMKGRG 226 (531)
Q Consensus 169 ~~g~~~~a~~~~~~~~~~~~~~~----------~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g 226 (531)
..|++++|+..|++......... .. ....++..+..+|...|++++|...|+...+..
T Consensus 83 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 151 (213)
T 1hh8_A 83 QTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 151 (213)
T ss_dssp HTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcC
Confidence 99999999999999887532110 00 123678889999999999999999999988763
No 123
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.67 E-value=8.1e-07 Score=70.74 Aligned_cols=99 Identities=12% Similarity=0.034 Sum_probs=84.5
Q ss_pred CHhhHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 038190 278 DVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLIN 357 (531)
Q Consensus 278 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~ 357 (531)
+...+..+...+.+.|++++|...|+...+.. +.+...|..+..+|...|++++|...|++..+..+. +...|..+..
T Consensus 35 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~-~~~~~~~lg~ 112 (151)
T 3gyz_A 35 MMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKN-DYTPVFHTGQ 112 (151)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSS-CCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCC-CcHHHHHHHH
Confidence 45567778888999999999999999988863 336788888999999999999999999999887654 6778888999
Q ss_pred HHHhcCCHHHHHHHHHHHHhC
Q 038190 358 SYSKIEKVEEALSLYGEMISM 378 (531)
Q Consensus 358 ~~~~~~~~~~a~~~~~~~~~~ 378 (531)
+|...|++++|...|++..+.
T Consensus 113 ~~~~lg~~~eA~~~~~~al~l 133 (151)
T 3gyz_A 113 CQLRLKAPLKAKECFELVIQH 133 (151)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHh
Confidence 999999999999999998874
No 124
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.66 E-value=1.6e-07 Score=74.92 Aligned_cols=110 Identities=12% Similarity=-0.068 Sum_probs=85.6
Q ss_pred HHHHHHHcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCcchHHHHHHHHHHCCC
Q 038190 74 FFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVF 153 (531)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 153 (531)
.|+.+....+. +...+..+...+.+.|++++|+..|++..... +.+...|..+..++...|++++|...|++++...+
T Consensus 9 ~~~~al~~~p~-~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p 86 (148)
T 2vgx_A 9 TIAMLNEISSD-TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDI 86 (148)
T ss_dssp SHHHHTTCCHH-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred hHHHHHcCCHh-hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence 44555443332 45567777888888899999999999888765 55777888888888888999999999988888753
Q ss_pred CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 038190 154 SPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAF 186 (531)
Q Consensus 154 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 186 (531)
. +...+..+..+|...|++++|+..|++....
T Consensus 87 ~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 87 X-EPRFPFHAAECLLQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp T-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred C-CchHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3 6677888888888899999999988888775
No 125
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.65 E-value=1.6e-06 Score=78.31 Aligned_cols=173 Identities=10% Similarity=-0.051 Sum_probs=125.5
Q ss_pred HhhHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCH-----HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC---CC--
Q 038190 279 VLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDV-----VVYSSLIDGYCLMGRIDDARKLFVSIESEGCI---PD-- 348 (531)
Q Consensus 279 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~---p~-- 348 (531)
...+...+..+...|++++|.+.+++..+....... ..+..+...+...|++++|...+++..+.... +.
T Consensus 75 ~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 154 (293)
T 2qfc_A 75 KKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQN 154 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHH
Confidence 345556778888999999999999988775322111 22344556678889999999999998764221 11
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCCcccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHH
Q 038190 349 TSSYNTLINSYSKIEKVEEALSLYGEMISMG-VRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWE 427 (531)
Q Consensus 349 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 427 (531)
..+|+.+...|...|++++|...|++..+.. ..++ .......++..+..+|...|++++|..
T Consensus 155 ~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~-----------------~~~~~~~~~~nlg~~y~~~~~y~~Al~ 217 (293)
T 2qfc_A 155 LYIENAIANIYAENGYLKKGIDLFEQILKQLEALHD-----------------NEEFDVKVRYNHAKALYLDSRYEESLY 217 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC-----------------CHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCc-----------------cccchHHHHHhHHHHHHHHhhHHHHHH
Confidence 4578899999999999999999999876310 0010 000022588999999999999999999
Q ss_pred HHHHhhhC----CCCC-cHHHHHHHHHHHHHcCCHHHH-HHHHHHHH
Q 038190 428 LFKKLPRY----GPEP-NVVTYTVMICGLCIEGGIEKA-YDLLPDME 468 (531)
Q Consensus 428 ~~~~~~~~----g~~p-~~~~~~~l~~~~~~~g~~~~A-~~~~~~~~ 468 (531)
++++..+. +... -..+|..+..+|...|++++| ...+++..
T Consensus 218 ~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 218 QVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 99998752 1111 167788999999999999999 77676543
No 126
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.64 E-value=8.6e-07 Score=67.99 Aligned_cols=114 Identities=16% Similarity=0.088 Sum_probs=78.6
Q ss_pred hhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCcchHHHHHHHHHHCCCCCChhhHHHHHHH
Q 038190 87 MPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRG 166 (531)
Q Consensus 87 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 166 (531)
...|..+...+...|++++|+++++++.+.. +.+..++..+...+...|++++|..+++.+.+..+ .+..++..+..+
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~ 86 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-NNAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC-ccHHHHHHHHHH
Confidence 4567777777778888888888888877654 34566777777777777888888888777776542 356677777777
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCCCCCcHHhHHHHHHHHH
Q 038190 167 LCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLC 207 (531)
Q Consensus 167 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 207 (531)
+...|++++|...|+++... .|. +...+..+...+.
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~--~~~---~~~~~~~l~~~~~ 122 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKALEL--DPN---NAEAKQNLGNAKQ 122 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--CTT---CHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHh--CCC---cHHHHHHHHHHHH
Confidence 77778888888777777665 332 4445555544443
No 127
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.63 E-value=2.6e-06 Score=72.72 Aligned_cols=140 Identities=14% Similarity=0.001 Sum_probs=110.2
Q ss_pred hHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 038190 281 SYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYS 360 (531)
Q Consensus 281 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~ 360 (531)
.+..+...+...|++++|...|++.. .|+...+..+...|...|++++|...|++..+.... +...|..+..+|.
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~lg~~~~ 82 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKH-LAVAYFQRGMLYY 82 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-chHHHHHHHHHHH
Confidence 45567778889999999999998763 568899999999999999999999999999887533 6788999999999
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHhCC--CCC-CHHHHHHHHHHHHcCCChHHHHHHHHHhhhC
Q 038190 361 KIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTK--FEL-DLTVFNCLVDGLCKSWRLRSAWELFKKLPRY 435 (531)
Q Consensus 361 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~--~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 435 (531)
..|++++|...|++..+......... ....+ ..| ....+..+..+|...|++++|...|++..+.
T Consensus 83 ~~~~~~~A~~~~~~al~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 150 (213)
T 1hh8_A 83 QTEKYDLAIKDLKEALIQLRGNQLID----------YKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 150 (213)
T ss_dssp HTTCHHHHHHHHHHHHHTTTTCSEEE----------CGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HcccHHHHHHHHHHHHHhCCCccHHH----------HHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHc
Confidence 99999999999999987431100000 00000 011 3467889999999999999999999999874
No 128
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.62 E-value=9.1e-07 Score=72.00 Aligned_cols=129 Identities=10% Similarity=-0.016 Sum_probs=90.4
Q ss_pred hhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCcchHHHHHHHHHHCCCCCChhhHHHHHHHH
Q 038190 88 PSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGL 167 (531)
Q Consensus 88 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 167 (531)
..|..+...+...|++++|...|++..+.. +.+..++..+..++...|++++|...+++.++..+ .+..++..+..++
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~~a~~~ 91 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDK-KYIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHH
Confidence 456666777778888888888888877654 44667777777788888888888888888777643 3566777777888
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCCCCCcHHhHH--HHHHHHHhcCChhHHHHHHHHHh
Q 038190 168 CMQGKFTEASGLFTKFVAFDCRPNVIPNVICYA--SIIDGLCKDGFVNKVRVLFLDMK 223 (531)
Q Consensus 168 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~~~~a~~~~~~m~ 223 (531)
...|++++|...|++.... .|. +...+. .++..+...|++++|...+....
T Consensus 92 ~~~~~~~~A~~~~~~a~~~--~p~---~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 92 MALGKFRAALRDYETVVKV--KPH---DKDAKMKYQECNKIVKQKAFERAIAGDEHKR 144 (166)
T ss_dssp HHTTCHHHHHHHHHHHHHH--STT---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHh--CCC---CHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence 8888888888888887765 231 334443 33333666677777777776543
No 129
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.62 E-value=1.3e-07 Score=75.45 Aligned_cols=99 Identities=9% Similarity=-0.130 Sum_probs=76.5
Q ss_pred ChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCcchHHHHHHHHHHCCCCCChhhHHHHHH
Q 038190 86 FMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIR 165 (531)
Q Consensus 86 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 165 (531)
+...|..+...+.+.|++++|+..|+++.... +.+...|..+..++...|++++|...|+++++..+. +...|..+..
T Consensus 35 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~-~~~~~~~lg~ 112 (151)
T 3gyz_A 35 MMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKN-DYTPVFHTGQ 112 (151)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSS-CCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCC-CcHHHHHHHH
Confidence 34567777777888888888888888887765 456777888888888888888888888888877543 5667777888
Q ss_pred HHHhcCChHHHHHHHHHHHHc
Q 038190 166 GLCMQGKFTEASGLFTKFVAF 186 (531)
Q Consensus 166 ~~~~~g~~~~a~~~~~~~~~~ 186 (531)
+|...|++++|+..|++....
T Consensus 113 ~~~~lg~~~eA~~~~~~al~l 133 (151)
T 3gyz_A 113 CQLRLKAPLKAKECFELVIQH 133 (151)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHh
Confidence 888888888888888888775
No 130
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.61 E-value=5.6e-08 Score=89.63 Aligned_cols=150 Identities=13% Similarity=0.006 Sum_probs=107.1
Q ss_pred CHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC--------------HhhHHHHHHHH
Q 038190 67 ELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPD--------------FVSLNILMNCF 132 (531)
Q Consensus 67 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~--------------~~~~~~li~~~ 132 (531)
++++|...|+......+. +...|..+...+.+.|++++|+..|++..+...... ..+|..+..++
T Consensus 128 ~~~~A~~~~~~a~~~~p~-~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~ 206 (336)
T 1p5q_A 128 SFEKAKESWEMNSEEKLE-QSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCH 206 (336)
T ss_dssp EEECCCCGGGCCHHHHHH-HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred ecccccchhcCCHHHHHH-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555444332222 456788888888899999999999999887642211 46777888888
Q ss_pred HccCCcchHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCCCcHHhHHHHHHHHHhcCCh
Q 038190 133 CKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFV 212 (531)
Q Consensus 133 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 212 (531)
.+.|++++|...++++++..+. +..+|..+..+|...|++++|+..|++.... .|+ +..++..+..++...|+.
T Consensus 207 ~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l--~P~---~~~a~~~l~~~~~~~~~~ 280 (336)
T 1p5q_A 207 LKLQAFSAAIESCNKALELDSN-NEKGLSRRGEAHLAVNDFELARADFQKVLQL--YPN---NKAAKTQLAVCQQRIRRQ 280 (336)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSS---CHHHHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--CCC---CHHHHHHHHHHHHHHHHH
Confidence 8888888888888888877533 6677778888888888888888888888776 442 566777788888888887
Q ss_pred hHH-HHHHHHHh
Q 038190 213 NKV-RVLFLDMK 223 (531)
Q Consensus 213 ~~a-~~~~~~m~ 223 (531)
++| ...|..|.
T Consensus 281 ~~a~~~~~~~~~ 292 (336)
T 1p5q_A 281 LAREKKLYANMF 292 (336)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 777 44555554
No 131
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.61 E-value=4.2e-07 Score=75.14 Aligned_cols=120 Identities=13% Similarity=0.094 Sum_probs=99.6
Q ss_pred CcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHH-HHccCCc--ch
Q 038190 64 GEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNC-FCKMIGV--SD 140 (531)
Q Consensus 64 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~-~~~~g~~--~~ 140 (531)
..|++++|...|+...+..+. +...|..+...+...|++++|+..|++..+.. +.+...+..+..+ +...|++ +.
T Consensus 22 ~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~~~ 99 (177)
T 2e2e_A 22 SQQNPEAQLQALQDKIRANPQ-NSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMTAQ 99 (177)
T ss_dssp -----CCCCHHHHHHHHHCCS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCCHH
T ss_pred hccCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcchHH
Confidence 356899999999999887765 77899999999999999999999999998765 4567788888888 7788998 99
Q ss_pred HHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 038190 141 AFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAF 186 (531)
Q Consensus 141 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 186 (531)
|...++.+++..+. +...+..+..+|...|++++|...|++....
T Consensus 100 A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 100 TRAMIDKALALDSN-EITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp HHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCCC-cHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 99999999887533 5778888899999999999999999999886
No 132
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.60 E-value=1.8e-06 Score=77.90 Aligned_cols=178 Identities=9% Similarity=-0.057 Sum_probs=131.1
Q ss_pred hhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCH-----hhHHHHHHHHHccCCcchHHHHHHHHHHCCCC---CC--
Q 038190 87 MPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDF-----VSLNILMNCFCKMIGVSDAFVALGRILRKVFS---PD-- 156 (531)
Q Consensus 87 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~-----~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~---~~-- 156 (531)
...+...+..+...|++++|++.+.+..+.....+. ..+..+...+...|++++|...+++.++.... +.
T Consensus 75 ~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 154 (293)
T 2qfc_A 75 KKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQN 154 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHH
Confidence 345566778889999999999999988876422111 22445566778889999999999998864322 11
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHHHHcC-CCCCC-CCcHHhHHHHHHHHHhcCChhHHHHHHHHHhhC----CCCC-
Q 038190 157 VVTLGCLIRGLCMQGKFTEASGLFTKFVAFD-CRPNV-IPNVICYASIIDGLCKDGFVNKVRVLFLDMKGR----GIYP- 229 (531)
Q Consensus 157 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~-~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~----g~~p- 229 (531)
..+++.+...|...|++++|+..|++..... ..++. .....+++.+...|...|++++|...+++..+. +...
T Consensus 155 ~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~ 234 (293)
T 2qfc_A 155 LYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMAL 234 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSS
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHH
Confidence 4488899999999999999999999987321 12210 012258899999999999999999999987643 1111
Q ss_pred CHhhHHHHHHHHHhcCChhhh-hcchHHHHHHHHHH
Q 038190 230 DAFVYNSLIRVYCCAVNWEDA-KGNTSAALELHEEF 264 (531)
Q Consensus 230 ~~~~~~~li~~~~~~~~~~~a-~~~~~~a~~~~~~~ 264 (531)
-..+|..+...|...|++++| ...+++|+.+++..
T Consensus 235 ~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~~~~~ 270 (293)
T 2qfc_A 235 IGQLYYQRGECLRKLEYEEAEIEDAYKKASFFFDIL 270 (293)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHh
Confidence 156788888999999999999 77688888776553
No 133
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.60 E-value=3.3e-07 Score=77.58 Aligned_cols=159 Identities=8% Similarity=-0.087 Sum_probs=104.1
Q ss_pred cCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhC----CCC-CCHhhHHHHHHHHHccCCcc
Q 038190 65 EVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTI----GLL-PDFVSLNILMNCFCKMIGVS 139 (531)
Q Consensus 65 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----g~~-~~~~~~~~li~~~~~~g~~~ 139 (531)
.|++++|.+.++.+.. .+.....++..+...+...|++++|+..+++..+. +.. ....++..+...+...|+++
T Consensus 5 ~g~~~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 83 (203)
T 3gw4_A 5 AHDYALAERQAQALLA-HPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWD 83 (203)
T ss_dssp --CHHHHHHHHHHHHT-STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred cccHHHHHHHHHHhcC-ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 4688999885555533 33335667888888888999999999988887652 111 22346777777888888888
Q ss_pred hHHHHHHHHHHC----CCC--CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCC-CCcHHhHHHHHHHHHhcCCh
Q 038190 140 DAFVALGRILRK----VFS--PDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNV-IPNVICYASIIDGLCKDGFV 212 (531)
Q Consensus 140 ~a~~~~~~~~~~----~~~--~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~ 212 (531)
+|...+++..+. +.. ....++..+...+...|++++|...+++........+. ..-..++..+...+...|++
T Consensus 84 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 163 (203)
T 3gw4_A 84 AARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNL 163 (203)
T ss_dssp HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCH
Confidence 888888877653 111 12345677778888888888888888777643211110 01123456667777777888
Q ss_pred hHHHHHHHHHhh
Q 038190 213 NKVRVLFLDMKG 224 (531)
Q Consensus 213 ~~a~~~~~~m~~ 224 (531)
++|...+++..+
T Consensus 164 ~~A~~~~~~al~ 175 (203)
T 3gw4_A 164 LEAQQHWLRARD 175 (203)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 877777766553
No 134
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.59 E-value=3e-06 Score=68.88 Aligned_cols=128 Identities=10% Similarity=0.013 Sum_probs=93.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHH
Q 038190 315 VVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELF 394 (531)
Q Consensus 315 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~ 394 (531)
..+..+...+...|++++|...|++..+.... +...+..+...+...|++++|...+++..+.. |+
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~--~~----------- 79 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELNPS-NAIYYGNRSLAYLRTECYGYALGDATRAIELD--KK----------- 79 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TT-----------
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cc-----------
Confidence 44566666777888888888888887776433 57777888888888888888888888877642 22
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHhhhCCCCCcHHHHH--HHHHHHHHcCCHHHHHHHHHHH
Q 038190 395 RTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYT--VMICGLCIEGGIEKAYDLLPDM 467 (531)
Q Consensus 395 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~--~l~~~~~~~g~~~~A~~~~~~~ 467 (531)
+...+..+..++...|++++|...|+++.+.. +.+...+. .++..+...|++++|++.+.+.
T Consensus 80 ----------~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 143 (166)
T 1a17_A 80 ----------YIKGYYRRAASNMALGKFRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDEHK 143 (166)
T ss_dssp ----------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ----------cHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHHcccch
Confidence 67788888889999999999999999888742 22344443 3333466778888888777654
No 135
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.57 E-value=1.2e-06 Score=68.12 Aligned_cols=118 Identities=8% Similarity=-0.034 Sum_probs=85.6
Q ss_pred ChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCcchHHHHHHHHHHCCCCCChhhHHHHHH
Q 038190 86 FMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIR 165 (531)
Q Consensus 86 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 165 (531)
+...|..+...+.+.|++++|+..|++..+.. +.+..++..+..++...|++++|...++++.+.... +..++..+..
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~ 92 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPT-FIKGYTRKAA 92 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-chHHHHHHHH
Confidence 45677777788888888888888888887664 446677777888888888888888888888776432 5667777788
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCCCCCcHHhHHHHHHHHHhcC
Q 038190 166 GLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDG 210 (531)
Q Consensus 166 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 210 (531)
++...|++++|...|++.... .|. +...+..+...+...|
T Consensus 93 ~~~~~~~~~~A~~~~~~~~~~--~p~---~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 93 ALEAMKDYTKAMDVYQKALDL--DSS---CKEAADGYQRCMMAQY 132 (133)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--CGG---GTHHHHHHHHHHHHHT
T ss_pred HHHHHhhHHHHHHHHHHHHHh--CCC---chHHHHHHHHHHHHhc
Confidence 888888888888888887765 331 4455666666655544
No 136
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.56 E-value=2.7e-06 Score=65.49 Aligned_cols=96 Identities=10% Similarity=0.046 Sum_probs=60.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHH
Q 038190 316 VYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFR 395 (531)
Q Consensus 316 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~ 395 (531)
.+......|.+.|++++|...|++.++..+. +...|..+..+|.+.|++++|+..|++..+. .|+
T Consensus 15 ~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~------------ 79 (126)
T 4gco_A 15 EEKNKGNEYFKKGDYPTAMRHYNEAVKRDPE-NAILYSNRAACLTKLMEFQRALDDCDTCIRL--DSK------------ 79 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTT------------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHhhHHHhhccHHHHHHHHHHHHHh--hhh------------
Confidence 3445555666666666666666666655432 5566666666666677777777666666553 222
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHhhhC
Q 038190 396 TLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRY 435 (531)
Q Consensus 396 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 435 (531)
+...|..+..+|...|++++|.+.|++.++.
T Consensus 80 ---------~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l 110 (126)
T 4gco_A 80 ---------FIKGYIRKAACLVAMREWSKAQRAYEDALQV 110 (126)
T ss_dssp ---------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ---------hhHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 5566666777777777777777777766663
No 137
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.56 E-value=1.7e-06 Score=66.93 Aligned_cols=119 Identities=11% Similarity=0.013 Sum_probs=80.9
Q ss_pred hhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCcchHHHHHHHHHHCCCCCChhhHHHHHHH
Q 038190 87 MPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRG 166 (531)
Q Consensus 87 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 166 (531)
...|..+...+...|++++|+..+++..... +.+...+..+..++...|++++|...++...+..+ .+...+..+..+
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~ 89 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDP-AYSKAYGRMGLA 89 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCc-cCHHHHHHHHHH
Confidence 4456666777777778888888877776653 34566677777777777777777777777776542 245667777777
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCCCCCcHHhHHHHHHHHHhcCCh
Q 038190 167 LCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFV 212 (531)
Q Consensus 167 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 212 (531)
+...|++++|...|++.... .|+ +...+..+..++...|++
T Consensus 90 ~~~~~~~~~A~~~~~~~~~~--~p~---~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 90 LSSLNKHVEAVAYYKKALEL--DPD---NETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--STT---CHHHHHHHHHHHHHHTTC
T ss_pred HHHhCCHHHHHHHHHHHHhc--Ccc---chHHHHHHHHHHHHHhcC
Confidence 77777777777777777665 332 455666666666665553
No 138
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.54 E-value=6.8e-07 Score=75.65 Aligned_cols=143 Identities=10% Similarity=-0.014 Sum_probs=70.8
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCC-CCcHHhHHHHHHHHHhcCChhHHHHHHHHHhhC----CCCC--
Q 038190 157 VVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNV-IPNVICYASIIDGLCKDGFVNKVRVLFLDMKGR----GIYP-- 229 (531)
Q Consensus 157 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~----g~~p-- 229 (531)
..++..+...+...|++++|+..+++........+. .....++..+...+...|++++|...+++..+. +-.+
T Consensus 26 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 105 (203)
T 3gw4_A 26 SGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLA 105 (203)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHH
Confidence 344455555555555555555555554432111000 012334555555566666666666665554332 1111
Q ss_pred CHhhHHHHHHHHHhcCChhhhhcchHHHHHHHHHHHhCCCCCCccccCCHhhHHHHHHHHhcCCCHHHHHHHHHHHHh
Q 038190 230 DAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKS 307 (531)
Q Consensus 230 ~~~~~~~li~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 307 (531)
....+..+...+...|++++|...+++++++...... ...-..++..+...+...|++++|.+.+++..+
T Consensus 106 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~--------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 175 (203)
T 3gw4_A 106 ASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADD--------QVAIACAFRGLGDLAQQEKNLLEAQQHWLRARD 175 (203)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccc--------hHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 1233455555666666666666655555554332110 111123455666677777777777777666543
No 139
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.53 E-value=2.2e-06 Score=76.73 Aligned_cols=98 Identities=15% Similarity=-0.011 Sum_probs=61.7
Q ss_pred hhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCcchHHHHHHHHHHCCCCCChhhHHHHHHH
Q 038190 87 MPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRG 166 (531)
Q Consensus 87 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 166 (531)
...+..+...+.+.|++++|+..|++..+.. +.+...|..+..++.+.|++++|...++++++..+. +...+..+..+
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~ 81 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-SVKAHFFLGQC 81 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-CHHHHHHHHHH
Confidence 4455566666666777777777777666553 335556666666666666677776666666665422 45566666666
Q ss_pred HHhcCChHHHHHHHHHHHHc
Q 038190 167 LCMQGKFTEASGLFTKFVAF 186 (531)
Q Consensus 167 ~~~~g~~~~a~~~~~~~~~~ 186 (531)
|...|++++|+..|++....
T Consensus 82 ~~~~g~~~~A~~~~~~al~l 101 (281)
T 2c2l_A 82 QLEMESYDEAIANLQRAYSL 101 (281)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHh
Confidence 66666666666666666543
No 140
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.49 E-value=6.9e-07 Score=73.80 Aligned_cols=122 Identities=8% Similarity=0.028 Sum_probs=101.6
Q ss_pred HHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCcchHHHHHHHHHHCCCCCChhhHHHHHHH-HHhcCCh--
Q 038190 97 LAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRG-LCMQGKF-- 173 (531)
Q Consensus 97 ~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~-~~~~g~~-- 173 (531)
+...|++++|+..+++..+.. +.+...+..+..++...|+++.|...|+++.+..+. +...+..+..+ +...|++
T Consensus 20 ~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~l~~~~~~~~~ 97 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGE-NAELYAALATVLYYQASQHMT 97 (177)
T ss_dssp CC-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTCCC
T ss_pred hhhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhcCCcch
Confidence 345788999999999988765 557789999999999999999999999999987533 67788888888 7789998
Q ss_pred HHHHHHHHHHHHcCCCCCCCCcHHhHHHHHHHHHhcCChhHHHHHHHHHhhC
Q 038190 174 TEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGR 225 (531)
Q Consensus 174 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 225 (531)
++|+..|++.... .|+ +...+..+...|...|++++|...|++..+.
T Consensus 98 ~~A~~~~~~al~~--~p~---~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 98 AQTRAMIDKALAL--DSN---EITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp HHHHHHHHHHHHH--CTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHh--CCC---cHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 9999999999986 442 6788999999999999999999999999875
No 141
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.48 E-value=1.2e-06 Score=76.61 Aligned_cols=187 Identities=9% Similarity=-0.081 Sum_probs=138.1
Q ss_pred cCCHHHHHHHHHHHHHcCCCCChhhHHHH-------HHHHHccCCHHHHHHHHHHHHhCCCCCC----------------
Q 038190 65 EVELNDALCFFNYMIHMQPTPFMPSFNSL-------LGALAGKKYYVNFICLSERLNTIGLLPD---------------- 121 (531)
Q Consensus 65 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l-------i~~~~~~~~~~~a~~~~~~m~~~g~~~~---------------- 121 (531)
.++...|.+.|.++.+..|. ....|..+ ..++.+.++..+++..+.+-.+ +.|+
T Consensus 19 ~~d~~~A~~~F~~a~~~dP~-~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~~g~y~~~~ 95 (282)
T 4f3v_A 19 PMSEARSLDLFTEITNYDES-ACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAIGGLYGDIT 95 (282)
T ss_dssp TTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEECCTTTCCCE
T ss_pred CCCHHHHHHHHHHHHHhChh-hhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhccCCcccccc
Confidence 45999999999999998876 67789888 5666666666666666665554 1221
Q ss_pred ------HhhHHHHHHHHHccCCcchHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCCCc
Q 038190 122 ------FVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPN 195 (531)
Q Consensus 122 ------~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 195 (531)
...+..+...+...|++++|.++|+.+...+ |+....-.+...+.+.+++++|+..|+..... ++ |.
T Consensus 96 ~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~---~d--~~ 168 (282)
T 4f3v_A 96 YPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKW---PD--KF 168 (282)
T ss_dssp EECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGC---SC--HH
T ss_pred cccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhcc---CC--cc
Confidence 1233445677888999999999999988765 33336666777899999999999999865442 11 11
Q ss_pred --HHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCC--HhhHHHHHHHHHhcCChhhhhcchHHHHHHHHHHHhCC
Q 038190 196 --VICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPD--AFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGN 268 (531)
Q Consensus 196 --~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~--~~~~~~li~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~ 268 (531)
..++..+..++...|++++|+..|++.......|. .........++.+.|+.++|.. +|+++....
T Consensus 169 ~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~-------~l~~a~a~~ 238 (282)
T 4f3v_A 169 LAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVA-------LLEWLQTTH 238 (282)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHH-------HHHHHHHHS
T ss_pred cHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHH-------HHHHHHhcC
Confidence 34788889999999999999999999985433243 3355566677888999998888 887777755
No 142
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.48 E-value=9.1e-06 Score=62.07 Aligned_cols=97 Identities=19% Similarity=0.265 Sum_probs=55.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHH
Q 038190 315 VVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELF 394 (531)
Q Consensus 315 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~ 394 (531)
..+..+...+...|++++|.+.|+++.+... .+...+..+...+...|++++|..+++++.+.. |
T Consensus 10 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--~------------ 74 (125)
T 1na0_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELDP-NNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD--P------------ 74 (125)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--T------------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc-CcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC--C------------
Confidence 4445555555556666666666665554432 244555555666666666666666666655421 1
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHhhhC
Q 038190 395 RTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRY 435 (531)
Q Consensus 395 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 435 (531)
.+..++..+...|...|++++|..+|+++.+.
T Consensus 75 ---------~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 106 (125)
T 1na0_A 75 ---------NNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 106 (125)
T ss_dssp ---------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ---------ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 14555666666666666666666666666553
No 143
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.47 E-value=4.6e-06 Score=76.75 Aligned_cols=98 Identities=12% Similarity=0.005 Sum_probs=78.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHH
Q 038190 349 TSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWEL 428 (531)
Q Consensus 349 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 428 (531)
...|..+..+|.+.|++++|+..+++..+.. |+ +...|..+..+|...|++++|...
T Consensus 196 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~--p~---------------------~~~a~~~lg~~~~~~g~~~~A~~~ 252 (336)
T 1p5q_A 196 LASHLNLAMCHLKLQAFSAAIESCNKALELD--SN---------------------NEKGLSRRGEAHLAVNDFELARAD 252 (336)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TT---------------------CHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CC---------------------cHHHHHHHHHHHHHCCCHHHHHHH
Confidence 4678888888999999999999998887742 32 778899999999999999999999
Q ss_pred HHHhhhCCCCCcHHHHHHHHHHHHHcCCHHHH-HHHHHHHHHH
Q 038190 429 FKKLPRYGPEPNVVTYTVMICGLCIEGGIEKA-YDLLPDMEEK 470 (531)
Q Consensus 429 ~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A-~~~~~~~~~~ 470 (531)
|+++.+.. +-+...+..+..++...|++++| ..+|+.|...
T Consensus 253 ~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 294 (336)
T 1p5q_A 253 FQKVLQLY-PNNKAAKTQLAVCQQRIRRQLAREKKLYANMFER 294 (336)
T ss_dssp HHHHHHHC-SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99998852 23567888888889899999888 4567666554
No 144
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.46 E-value=2.7e-07 Score=77.88 Aligned_cols=131 Identities=17% Similarity=-0.009 Sum_probs=90.0
Q ss_pred hhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCH----------------hhHHHHHHHHHccCCcchHHHHHHHHHH
Q 038190 87 MPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDF----------------VSLNILMNCFCKMIGVSDAFVALGRILR 150 (531)
Q Consensus 87 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~----------------~~~~~li~~~~~~g~~~~a~~~~~~~~~ 150 (531)
...+..+...+...|++++|+..|++..+.. +.+. .++..+..++...|++++|...++.+++
T Consensus 38 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~ 116 (198)
T 2fbn_A 38 AFDIKEEGNEFFKKNEINEAIVKYKEALDFF-IHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLK 116 (198)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-TTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-hcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 4467777788889999999999999988753 1122 5677777788888888888888888877
Q ss_pred CCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCCCcHHhHHHHHHHHHhcCChhHHH-HHHHHHhh
Q 038190 151 KVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVR-VLFLDMKG 224 (531)
Q Consensus 151 ~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~-~~~~~m~~ 224 (531)
..+ .+..++..+..+|...|++++|+..|++.... .|+ +..++..+...+...++.+++. ..|..|..
T Consensus 117 ~~p-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~---~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~ 185 (198)
T 2fbn_A 117 IDK-NNVKALYKLGVANMYFGFLEEAKENLYKAASL--NPN---NLDIRNSYELCVNKLKEARKKDKLTFGGMFD 185 (198)
T ss_dssp HST-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--STT---CHHHHHHHHHHHHHHHHHHC-----------
T ss_pred hCc-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHH--CCC---cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 643 35667777888888888888888888887765 332 5667777777777666666655 44444443
No 145
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.46 E-value=7.1e-07 Score=71.14 Aligned_cols=110 Identities=12% Similarity=-0.064 Sum_probs=86.3
Q ss_pred HHHHHHhCCCCCCHhhHHHHHHHHHccCCcchHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 038190 109 LSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDC 188 (531)
Q Consensus 109 ~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 188 (531)
.|+++.... +.+...+..+...+.+.|++++|...|+.++...+. +...|..+..+|...|++++|+..|++....
T Consensus 9 ~~~~al~~~-p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l-- 84 (148)
T 2vgx_A 9 TIAMLNEIS-SDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHY-DSRFFLGLGACRQAMGQYDLAIHSYSYGAVM-- 84 (148)
T ss_dssp SHHHHTTCC-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--
T ss_pred hHHHHHcCC-HhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--
Confidence 344444432 234556777788888899999999999998887533 7778888889999999999999999998876
Q ss_pred CCCCCCcHHhHHHHHHHHHhcCChhHHHHHHHHHhhC
Q 038190 189 RPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGR 225 (531)
Q Consensus 189 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 225 (531)
.|+ +...|..+..+|...|++++|...|+...+.
T Consensus 85 ~p~---~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 85 DIX---EPRFPFHAAECLLQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp STT---CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCC---CchHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 443 6778888899999999999999999888764
No 146
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.45 E-value=1.4e-06 Score=68.84 Aligned_cols=99 Identities=10% Similarity=-0.130 Sum_probs=79.6
Q ss_pred ChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCcchHHHHHHHHHHCCCCCChhhHHHHHH
Q 038190 86 FMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIR 165 (531)
Q Consensus 86 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 165 (531)
+...+..+...+.+.|++++|+..|++..... +.+...|..+..++...|++++|...|++++...+. +...+..+..
T Consensus 17 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~ 94 (142)
T 2xcb_A 17 TLEQLYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMDIN-EPRFPFHAAE 94 (142)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CcHHHHHHHH
Confidence 34456667777888899999999999888765 457778888888888889999999999888887543 6667778888
Q ss_pred HHHhcCChHHHHHHHHHHHHc
Q 038190 166 GLCMQGKFTEASGLFTKFVAF 186 (531)
Q Consensus 166 ~~~~~g~~~~a~~~~~~~~~~ 186 (531)
+|...|++++|+..|++....
T Consensus 95 ~~~~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 95 CHLQLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHh
Confidence 888899999999888888765
No 147
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.45 E-value=5.2e-06 Score=74.28 Aligned_cols=186 Identities=11% Similarity=0.018 Sum_probs=126.8
Q ss_pred CHhhHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 038190 278 DVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLIN 357 (531)
Q Consensus 278 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~ 357 (531)
+...+..+...+...|++++|...|+...+.. +.+...+..+..+|.+.|++++|...+++..+.... +...+..+..
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~ 80 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-SVKAHFFLGQ 80 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTT-CHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-CHHHHHHHHH
Confidence 45677888899999999999999999998863 237888999999999999999999999999987543 6788889999
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCC--C-cccHHHHH-----HHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHH
Q 038190 358 SYSKIEKVEEALSLYGEMISMGVRP--D-NSCILEAA-----ELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELF 429 (531)
Q Consensus 358 ~~~~~~~~~~a~~~~~~~~~~~~~~--~-~~~~~~a~-----~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 429 (531)
+|...|++++|...|++..+..... . ...+.... ..+..........+......+...+ .|++++|.+.+
T Consensus 81 ~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~l~--~~~~~~A~~~~ 158 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKKRWNSIEERRIHQESELHSYLTRLI--AAERERELEEC 158 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHHHHHHHHHHHHHHHTCCCCCCHHHHHHHHHH--HHHHHHHHTTT
T ss_pred HHHHcCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH--HHHHHHHHHHH
Confidence 9999999999999999887632110 0 01111111 1122223334444555544443332 68888998888
Q ss_pred HHhhhCCCCCcHH-HHHHHHHHHHHc-CCHHHHHHHHHHHHH
Q 038190 430 KKLPRYGPEPNVV-TYTVMICGLCIE-GGIEKAYDLLPDMEE 469 (531)
Q Consensus 430 ~~~~~~g~~p~~~-~~~~l~~~~~~~-g~~~~A~~~~~~~~~ 469 (531)
+...+. .|+.. ....+...+.+. +.+++|.++|+++.+
T Consensus 159 ~~al~~--~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~ 198 (281)
T 2c2l_A 159 QRNHEG--HEDDGHIRAQQACIEAKHDKYMADMDELFSQVDE 198 (281)
T ss_dssp SGGGTT--TSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred Hhhhcc--ccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 888764 45433 333333333333 556666666665443
No 148
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.44 E-value=2.5e-06 Score=74.66 Aligned_cols=128 Identities=11% Similarity=-0.029 Sum_probs=73.6
Q ss_pred HHHHHHHhcCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChhhhhcchHHHHHHHHHHHhCCCCCCccccC--C
Q 038190 201 SIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHP--D 278 (531)
Q Consensus 201 ~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~--~ 278 (531)
.+...+...|++++|.++|+.+...+ |+......+...+.+.+++++|+. .|+...... .| .
T Consensus 107 ayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~-------~l~~a~~~~-------d~~~~ 170 (282)
T 4f3v_A 107 GFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVID-------QVKSAGKWP-------DKFLA 170 (282)
T ss_dssp HHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHH-------HHTTGGGCS-------CHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHH-------HHHHhhccC-------CcccH
Confidence 34455555666666666665555432 222233333345555666665555 443221110 01 1
Q ss_pred HhhHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 038190 279 VLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPD--VVVYSSLIDGYCLMGRIDDARKLFVSIESEG 344 (531)
Q Consensus 279 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g 344 (531)
...+..+..++...|++++|++.|++.......|. .........++.+.|+.++|..+|+++....
T Consensus 171 ~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~ 238 (282)
T 4f3v_A 171 GAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTH 238 (282)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 22455667778888888888888888775433243 2345555666777888888888888888764
No 149
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.42 E-value=7.4e-06 Score=63.53 Aligned_cols=96 Identities=16% Similarity=0.150 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHH
Q 038190 315 VVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELF 394 (531)
Q Consensus 315 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~ 394 (531)
..+..+...+...|++++|...|++..+.... +...+..+...|...|++++|...+++..+.. |+
T Consensus 17 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~--~~----------- 82 (133)
T 2lni_A 17 LMVKNKGNECFQKGDYPQAMKHYTEAIKRNPK-DAKLYSNRAACYTKLLEFQLALKDCEECIQLE--PT----------- 82 (133)
T ss_dssp HHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTT-CHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC--TT-----------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CC-----------
Confidence 34444444444555555555555554443221 34444555555555555555555555544421 11
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHhhh
Q 038190 395 RTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPR 434 (531)
Q Consensus 395 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 434 (531)
+...+..+..+|...|++++|...|++..+
T Consensus 83 ----------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 112 (133)
T 2lni_A 83 ----------FIKGYTRKAAALEAMKDYTKAMDVYQKALD 112 (133)
T ss_dssp ----------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ----------chHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 444555555555556666666666655554
No 150
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.42 E-value=5.3e-06 Score=63.86 Aligned_cols=98 Identities=8% Similarity=-0.072 Sum_probs=78.0
Q ss_pred hhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCcchHHHHHHHHHHCCCCCChhhHHHHHHH
Q 038190 87 MPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRG 166 (531)
Q Consensus 87 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 166 (531)
...|..+...+.+.|++++|+..|++..+.. +.+...|..+..++.+.|++++|...++++++..+. +...|..+..+
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~ 81 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPN-FVRAYIRKATA 81 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-cHHHHHHHHHH
Confidence 3456777778888888888888888887765 456778888888888888888888888888877533 56778888888
Q ss_pred HHhcCChHHHHHHHHHHHHc
Q 038190 167 LCMQGKFTEASGLFTKFVAF 186 (531)
Q Consensus 167 ~~~~g~~~~a~~~~~~~~~~ 186 (531)
+...|++++|+..|++....
T Consensus 82 ~~~~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 82 QIAVKEYASALETLDAARTK 101 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhCHHHHHHHHHHHHHh
Confidence 88888888888888888765
No 151
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.41 E-value=6.8e-06 Score=63.43 Aligned_cols=120 Identities=10% Similarity=-0.040 Sum_probs=99.2
Q ss_pred CHhhHHHHHHHHHccCCcchHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCCCcHHhHH
Q 038190 121 DFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYA 200 (531)
Q Consensus 121 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 200 (531)
+...+..+...+...|+++.|...++++.+..+ .+..++..+..++...|++++|+..+++.... .|. +...+.
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~---~~~~~~ 84 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELNP-ANAVYFCNRAAAYSKLGNYAGAVQDCERAICI--DPA---YSKAYG 84 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTT---CHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHhhchHHHHHHHHHHHhc--Ccc---CHHHHH
Confidence 455778888899999999999999999988753 36788889999999999999999999999886 442 677899
Q ss_pred HHHHHHHhcCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCh
Q 038190 201 SIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNW 247 (531)
Q Consensus 201 ~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~ 247 (531)
.+...+...|++++|...|++..+... .+...+..+..++...|++
T Consensus 85 ~~~~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 85 RMGLALSSLNKHVEAVAYYKKALELDP-DNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHhcCc-cchHHHHHHHHHHHHHhcC
Confidence 999999999999999999999887532 2566677777777666653
No 152
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.38 E-value=7.6e-06 Score=63.09 Aligned_cols=98 Identities=13% Similarity=0.135 Sum_probs=76.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHH
Q 038190 349 TSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWEL 428 (531)
Q Consensus 349 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 428 (531)
...+..+...+.+.|++++|+..|++..+. .|+ +...|..+..+|...|++++|+..
T Consensus 8 A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~--~p~---------------------~~~~~~nlg~~~~~~~~~~~A~~~ 64 (127)
T 4gcn_A 8 AIAEKDLGNAAYKQKDFEKAHVHYDKAIEL--DPS---------------------NITFYNNKAAVYFEEKKFAECVQF 64 (127)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTT---------------------CHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCC---------------------CHHHHHhHHHHHHHhhhHHHHHHH
Confidence 345677888999999999999999998873 343 788999999999999999999999
Q ss_pred HHHhhhCC--CCCc----HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 038190 429 FKKLPRYG--PEPN----VVTYTVMICGLCIEGGIEKAYDLLPDMEE 469 (531)
Q Consensus 429 ~~~~~~~g--~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 469 (531)
+++.++.. ..++ ..+|..+..++...|++++|++.|++...
T Consensus 65 ~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 65 CEKAVEVGRETRADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhCcccchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 99988631 1111 23567777888888888888777765443
No 153
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.37 E-value=1.1e-05 Score=60.99 Aligned_cols=98 Identities=7% Similarity=-0.073 Sum_probs=63.2
Q ss_pred hhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCcchHHHHHHHHHHCCCCCChhhHHHHHHH
Q 038190 87 MPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRG 166 (531)
Q Consensus 87 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 166 (531)
...|..+...+...|++++|+..+++..... +.+...+..+..++...|++++|...++++.+..+. +...+..+..+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~ 81 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPD-WGKGYSRKAAA 81 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcc-cHHHHHHHHHH
Confidence 3455666666667777777777777766553 335556666666666677777777777766665322 45566666666
Q ss_pred HHhcCChHHHHHHHHHHHHc
Q 038190 167 LCMQGKFTEASGLFTKFVAF 186 (531)
Q Consensus 167 ~~~~g~~~~a~~~~~~~~~~ 186 (531)
+...|++++|...|++....
T Consensus 82 ~~~~~~~~~A~~~~~~~~~~ 101 (118)
T 1elw_A 82 LEFLNRFEEAKRTYEEGLKH 101 (118)
T ss_dssp HHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHhhHHHHHHHHHHHHHc
Confidence 67777777777777666654
No 154
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.37 E-value=7.2e-05 Score=67.43 Aligned_cols=193 Identities=9% Similarity=-0.066 Sum_probs=141.8
Q ss_pred CHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCC----------HHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccC
Q 038190 67 ELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKY----------YVNFICLSERLNTIGLLPDFVSLNILMNCFCKMI 136 (531)
Q Consensus 67 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~----------~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g 136 (531)
-.++|+.+++.++..+|. +..+|+.--..+...+. +++++.+++.+.... +-+..+|+.-..++...+
T Consensus 45 ~s~eaL~~t~~~L~~nP~-~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~-PKny~aW~hR~wlL~~l~ 122 (331)
T 3dss_A 45 LDESVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLP 122 (331)
T ss_dssp CSHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHCS
T ss_pred CCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHhccC
Confidence 446899999999997776 66778765544443333 688999999998875 557788988888888888
Q ss_pred C--cchHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCC-hHHHHHHHHHHHHcCCCCCCCCcHHhHHHHHHHHHhc----
Q 038190 137 G--VSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGK-FTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKD---- 209 (531)
Q Consensus 137 ~--~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~-~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---- 209 (531)
+ +++++.+++.+++..+. |..+|+.-..++...|. ++++++.+++++.. .|. |..+|+.....+...
T Consensus 123 ~~~~~~EL~~~~k~l~~dpr-Ny~AW~~R~~vl~~l~~~~~eel~~~~~~I~~--~p~---N~SAW~~R~~ll~~l~~~~ 196 (331)
T 3dss_A 123 EPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITR--NFS---NYSSWHYRSCLLPQLHPQP 196 (331)
T ss_dssp SCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH--CSC---CHHHHHHHHHHHHHHSCCC
T ss_pred cccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHH--CCC---CHHHHHHHHHHHHHhhhcc
Confidence 4 78999999999998644 88899988888888898 58999999999987 442 788888877776655
Q ss_pred ----------CChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCh----hhhhcchHHHHHHHHHHHhCC
Q 038190 210 ----------GFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNW----EDAKGNTSAALELHEEFVNGN 268 (531)
Q Consensus 210 ----------~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~----~~a~~~~~~a~~~~~~~~~~~ 268 (531)
+.++++++.++........ |...|+-+-..+.+.... ..-...++++++.++++.+..
T Consensus 197 ~~~~~~~~~~~~~~eEle~~~~ai~~~P~-d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~ 268 (331)
T 3dss_A 197 DSGPQGRLPENVLLKELELVQNAFFTDPN-DQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELE 268 (331)
T ss_dssp ------CCCHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHC
T ss_pred ccccccccchHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhC
Confidence 4578888888888765333 667776544444433111 112245667777888888755
No 155
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.36 E-value=6.3e-06 Score=64.47 Aligned_cols=99 Identities=15% Similarity=-0.020 Sum_probs=73.8
Q ss_pred ChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCcchHHHHHHHHHHCCCCCChhhHHHHHH
Q 038190 86 FMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIR 165 (531)
Q Consensus 86 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 165 (531)
+...|..+...+...|++++|+..|++..... +.+...+..+..++...|+++.|...++.+++..+. +...+..+..
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~ 85 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-SVKAHFFLGQ 85 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCch-hHHHHHHHHH
Confidence 56677777777888888888888888877664 445667777777777888888888888877776533 5667777777
Q ss_pred HHHhcCChHHHHHHHHHHHHc
Q 038190 166 GLCMQGKFTEASGLFTKFVAF 186 (531)
Q Consensus 166 ~~~~~g~~~~a~~~~~~~~~~ 186 (531)
++...|++++|+..|++....
T Consensus 86 ~~~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 86 CQLEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHH
Confidence 788888888888887777654
No 156
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.35 E-value=6.3e-06 Score=66.96 Aligned_cols=100 Identities=12% Similarity=-0.069 Sum_probs=80.6
Q ss_pred ChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCcchHHHHHHHHHHCCCCCChhhHHHHHH
Q 038190 86 FMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIR 165 (531)
Q Consensus 86 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 165 (531)
+...|..+...+.+.|++++|+..|++.++.. +.+...|..+..++.+.|++++|...|+++++..+. +...|..+..
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~ 87 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPK-YSKAWSRLGL 87 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHH
Confidence 45567777888888888999988888888765 446778888888888888888888888888887533 5778888888
Q ss_pred HHHhcCChHHHHHHHHHHHHcC
Q 038190 166 GLCMQGKFTEASGLFTKFVAFD 187 (531)
Q Consensus 166 ~~~~~g~~~~a~~~~~~~~~~~ 187 (531)
+|...|++++|+..|++.....
T Consensus 88 ~~~~~g~~~~A~~~~~~al~~~ 109 (164)
T 3sz7_A 88 ARFDMADYKGAKEAYEKGIEAE 109 (164)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHhC
Confidence 8888888888888888888763
No 157
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.32 E-value=2e-05 Score=60.54 Aligned_cols=95 Identities=14% Similarity=0.083 Sum_probs=58.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHH
Q 038190 316 VYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFR 395 (531)
Q Consensus 316 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~ 395 (531)
.+..+...+.+.|++++|...|++..+.... +...|..+..+|.+.|++++|+..+++..+.. |+
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~--p~------------ 70 (126)
T 3upv_A 6 EARLEGKEYFTKSDWPNAVKAYTEMIKRAPE-DARGYSNRAAALAKLMSFPEAIADCNKAIEKD--PN------------ 70 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TT------------
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CC------------
Confidence 4445555566666666666666666655332 45566666666666666666666666665532 22
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHhhh
Q 038190 396 TLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPR 434 (531)
Q Consensus 396 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 434 (531)
+...|..+..+|...|++++|...|++..+
T Consensus 71 ---------~~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 100 (126)
T 3upv_A 71 ---------FVRAYIRKATAQIAVKEYASALETLDAART 100 (126)
T ss_dssp ---------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ---------cHHHHHHHHHHHHHHhCHHHHHHHHHHHHH
Confidence 455666666666666666666666666655
No 158
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.31 E-value=8e-06 Score=61.02 Aligned_cols=103 Identities=9% Similarity=-0.092 Sum_probs=85.6
Q ss_pred CHHHHHHHHHHHHcCCChHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 038190 405 DLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECLKAIELLHKM 484 (531)
Q Consensus 405 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~i~~~~~a~~~~~~~ 484 (531)
+...+..+...+...|++++|...|++..+.. +.+...|..+..++...|++++|++.|++..+.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~-------------- 69 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINV-------------- 69 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--------------
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--------------
Confidence 55678889999999999999999999998753 336778889999999999999998877665432
Q ss_pred HHcCCCC--CHHHHHHHHHHHhcc-CChhHHHhhHHHhhhcchhh
Q 038190 485 AKRYVKP--DEITVSILEELLNKD-ENCHECMNLLPSFLSRNQEE 526 (531)
Q Consensus 485 ~~~~~~~--~~~~~~~l~~~~~~~-g~~~~a~~~~~~~~~~~~~~ 526 (531)
. +. +...+..+..++.+. |++++|.+.+++....++.+
T Consensus 70 ---~-~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~p~~ 110 (112)
T 2kck_A 70 ---I-EDEYNKDVWAAKADALRYIEGKEVEAEIAEARAKLEHHHH 110 (112)
T ss_dssp ---S-CCTTCHHHHHHHHHHHTTCSSCSHHHHHHHHHHGGGCCCC
T ss_pred ---C-cccchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcccCC
Confidence 2 23 578889999999999 99999999999998877654
No 159
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.31 E-value=5.3e-05 Score=72.56 Aligned_cols=200 Identities=8% Similarity=-0.116 Sum_probs=140.3
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCh----------------hhHHHHHHHHHccCCHHHHHHHHHHHHhCC-CCCCHh----
Q 038190 65 EVELNDALCFFNYMIHMQPTPFM----------------PSFNSLLGALAGKKYYVNFICLSERLNTIG-LLPDFV---- 123 (531)
Q Consensus 65 ~g~~~~A~~~~~~~~~~~~~~~~----------------~~~~~li~~~~~~~~~~~a~~~~~~m~~~g-~~~~~~---- 123 (531)
.|++++|++.|..+.+..+.... .++..+...|...|++++|.+.+..+...- ..++..
T Consensus 17 ~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 96 (434)
T 4b4t_Q 17 EKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKV 96 (434)
T ss_dssp HTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHH
Confidence 46999999999999986554221 247788999999999999999999875421 112221
Q ss_pred hHHHHHHHHHccCCcchHHHHHHHHHHC----CCCC-ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCC-CcHH
Q 038190 124 SLNILMNCFCKMIGVSDAFVALGRILRK----VFSP-DVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVI-PNVI 197 (531)
Q Consensus 124 ~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~ 197 (531)
+.+.+-..+...|+++.|..++...... +..+ -..++..+...|...|++++|..+++++...-...+.. ....
T Consensus 97 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~ 176 (434)
T 4b4t_Q 97 LKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVD 176 (434)
T ss_dssp HHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHH
Confidence 2333334445678999999998887642 2222 24577889999999999999999999887542222211 2355
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHhhC----CCCCC--HhhHHHHHHHHHhcCChhhhhcchHHHHHHHHHH
Q 038190 198 CYASIIDGLCKDGFVNKVRVLFLDMKGR----GIYPD--AFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEF 264 (531)
Q Consensus 198 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~----g~~p~--~~~~~~li~~~~~~~~~~~a~~~~~~a~~~~~~~ 264 (531)
++..++..|...|++++|..++++.... +.++. ...+..+...+...+++++|...+.++++.+...
T Consensus 177 ~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~~~~~~ 249 (434)
T 4b4t_Q 177 VHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFESYHNL 249 (434)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhh
Confidence 7899999999999999999999887542 11111 2345556667778888888888777766665544
No 160
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.29 E-value=0.00051 Score=61.89 Aligned_cols=229 Identities=10% Similarity=-0.024 Sum_probs=153.1
Q ss_pred HccCCHH-HHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCC----------cchHHHHHHHHHHCCCCCChhhHHHHHHH
Q 038190 98 AGKKYYV-NFICLSERLNTIGLLPDFVSLNILMNCFCKMIG----------VSDAFVALGRILRKVFSPDVVTLGCLIRG 166 (531)
Q Consensus 98 ~~~~~~~-~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~----------~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 166 (531)
.+.|.+. +|+++++.++..+ +-+..+|+.--.++...+. +++++.+++.++...+. +..+|+.-..+
T Consensus 40 ~~~~e~s~eaL~~t~~~L~~n-P~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PK-ny~aW~hR~wl 117 (331)
T 3dss_A 40 RQAGELDESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCWL 117 (331)
T ss_dssp HHTTCCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHH
Confidence 3556655 8999999999875 3445567665555544443 67899999999987644 78899988888
Q ss_pred HHhcC--ChHHHHHHHHHHHHcCCCCCCCCcHHhHHHHHHHHHhcCC-hhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHh
Q 038190 167 LCMQG--KFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGF-VNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCC 243 (531)
Q Consensus 167 ~~~~g--~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~ 243 (531)
+...| ++++++.+++++... +| .|..+|+.-.-.+...|. ++++++.++.+.+..+. |...|+.....+..
T Consensus 118 L~~l~~~~~~~EL~~~~k~l~~--dp---rNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~-N~SAW~~R~~ll~~ 191 (331)
T 3dss_A 118 LSRLPEPNWARELELCARFLEA--DE---RNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQ 191 (331)
T ss_dssp HHHCSSCCHHHHHHHHHHHHHH--CT---TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHH
T ss_pred HhccCcccHHHHHHHHHHHHHh--CC---CCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHH
Confidence 88888 489999999999987 44 288899888888888888 58999999999987544 77778776666555
Q ss_pred cCChhh-------hhcchHHHHHHHHHHHhCCCCCCccccCCHhhHHHHHHHHhcC-----------CCHHHHHHHHHHH
Q 038190 244 AVNWED-------AKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKD-----------VLVDKAKELFLDM 305 (531)
Q Consensus 244 ~~~~~~-------a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~-----------~~~~~a~~~~~~~ 305 (531)
...... ..+.++++++.+....... +-|..+|+-+-..+.+. +.++++++.++++
T Consensus 192 l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~-------P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~el 264 (331)
T 3dss_A 192 LHPQPDSGPQGRLPENVLLKELELVQNAFFTD-------PNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKEL 264 (331)
T ss_dssp HSCCC------CCCHHHHHHHHHHHHHHHHHS-------TTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHH
T ss_pred hhhccccccccccchHHHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHH
Confidence 422110 1134666777888777765 44666676444444443 3456777777777
Q ss_pred HhCCCCCCH-HHHHHHHH---HHHhcCCHHHHHHHHHHHHhc
Q 038190 306 KSRGIIPDV-VVYSSLID---GYCLMGRIDDARKLFVSIESE 343 (531)
Q Consensus 306 ~~~~~~~~~-~~~~~ll~---~~~~~g~~~~a~~~~~~~~~~ 343 (531)
.+. .||. ..+..++. .....|..+++...+.++.+.
T Consensus 265 le~--~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ 304 (331)
T 3dss_A 265 QEL--EPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAV 304 (331)
T ss_dssp HHH--CTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHH
T ss_pred Hhh--CcccchHHHHHHHHHHhhcccccHHHHHHHHHHHHHh
Confidence 765 3332 22222211 111345666677777777665
No 161
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.28 E-value=4e-06 Score=66.19 Aligned_cols=98 Identities=11% Similarity=-0.103 Sum_probs=79.7
Q ss_pred HhhHHHHHHHHHccCCcchHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCCCcHHhHHH
Q 038190 122 FVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYAS 201 (531)
Q Consensus 122 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (531)
...+..+...+.+.|++++|...|+.++...+. +...|..+..+|...|++++|+..|++.... .|+ +...|..
T Consensus 18 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~---~~~~~~~ 91 (142)
T 2xcb_A 18 LEQLYALGFNQYQAGKWDDAQKIFQALCMLDHY-DARYFLGLGACRQSLGLYEQALQSYSYGALM--DIN---EPRFPFH 91 (142)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTT---CTHHHHH
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--CCC---CcHHHHH
Confidence 445666777788889999999999998887543 6778888888899999999999999998876 443 6677888
Q ss_pred HHHHHHhcCChhHHHHHHHHHhhC
Q 038190 202 IIDGLCKDGFVNKVRVLFLDMKGR 225 (531)
Q Consensus 202 l~~~~~~~~~~~~a~~~~~~m~~~ 225 (531)
+..+|...|++++|...|+...+.
T Consensus 92 lg~~~~~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 92 AAECHLQLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHh
Confidence 888899999999999999887754
No 162
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.27 E-value=2.6e-05 Score=63.22 Aligned_cols=97 Identities=13% Similarity=-0.030 Sum_probs=57.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHH
Q 038190 314 VVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAEL 393 (531)
Q Consensus 314 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~ 393 (531)
...+..+...+.+.|++++|...|++..+.... +...|..+..+|...|++++|+..|++..+.. |+
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~---------- 77 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIAPA-NPIYLSNRAAAYSASGQHEKAAEDAELATVVD--PK---------- 77 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TT----------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CC----------
Confidence 344555555566666666666666666554322 45556666666666666666666666665532 21
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHhhh
Q 038190 394 FRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPR 434 (531)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 434 (531)
+...|..+..+|...|++++|...|++..+
T Consensus 78 -----------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 107 (164)
T 3sz7_A 78 -----------YSKAWSRLGLARFDMADYKGAKEAYEKGIE 107 (164)
T ss_dssp -----------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred -----------CHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 455666666666666666666666666665
No 163
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.25 E-value=1.4e-05 Score=61.53 Aligned_cols=98 Identities=7% Similarity=-0.033 Sum_probs=62.2
Q ss_pred hhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCcchHHHHHHHHHHCCCCCC------hhhHH
Q 038190 88 PSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPD------VVTLG 161 (531)
Q Consensus 88 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~------~~~~~ 161 (531)
.++..+...+.+.|++++|+..|++.++.. +.+..+|..+..+|.+.|++++|+..+++.++..+... ..+|.
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~ 87 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMS 87 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHH
Confidence 345666677777777777777777776654 44556677777777777777777777777665432111 12455
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHc
Q 038190 162 CLIRGLCMQGKFTEASGLFTKFVAF 186 (531)
Q Consensus 162 ~li~~~~~~g~~~~a~~~~~~~~~~ 186 (531)
.+..++...|++++|++.|++....
T Consensus 88 ~lg~~~~~~~~~~~A~~~~~kal~~ 112 (127)
T 4gcn_A 88 RAGNAFQKQNDLSLAVQWFHRSLSE 112 (127)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 5566666667777777777666553
No 164
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.23 E-value=4.4e-05 Score=57.45 Aligned_cols=100 Identities=12% Similarity=0.011 Sum_probs=86.6
Q ss_pred CHhhHHHHHHHHHccCCcchHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCCCcHHhHH
Q 038190 121 DFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYA 200 (531)
Q Consensus 121 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 200 (531)
....+..+...+...|+++.|...++......+ .+...+..+..++...|++++|...+++.... .|. +...+.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~---~~~~~~ 76 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDP-HNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDL--KPD---WGKGYS 76 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTT---CHHHHH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHhhccHHHHHHHHHHHHHh--Ccc---cHHHHH
Confidence 345677888899999999999999999988753 36778888999999999999999999999886 342 677899
Q ss_pred HHHHHHHhcCChhHHHHHHHHHhhCC
Q 038190 201 SIIDGLCKDGFVNKVRVLFLDMKGRG 226 (531)
Q Consensus 201 ~l~~~~~~~~~~~~a~~~~~~m~~~g 226 (531)
.+..++...|++++|...|++..+..
T Consensus 77 ~~a~~~~~~~~~~~A~~~~~~~~~~~ 102 (118)
T 1elw_A 77 RKAAALEFLNRFEEAKRTYEEGLKHE 102 (118)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHcC
Confidence 99999999999999999999998753
No 165
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.22 E-value=4.4e-05 Score=60.35 Aligned_cols=98 Identities=14% Similarity=0.037 Sum_probs=76.8
Q ss_pred ChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC----HhhHHHHHHHHHccCCcchHHHHHHHHHHCCCCCChhhHH
Q 038190 86 FMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPD----FVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLG 161 (531)
Q Consensus 86 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~----~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 161 (531)
+...|..+...+...|++++|+..|++..+.. |+ ..++..+..++...|++++|...++...+..+. +...+.
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~ 103 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGLD--ATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGG-DVKALY 103 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSC-CHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHc--ccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCcc-CHHHHH
Confidence 55677777888888888999988888888763 44 567777788888888888888888888776432 566777
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHc
Q 038190 162 CLIRGLCMQGKFTEASGLFTKFVAF 186 (531)
Q Consensus 162 ~li~~~~~~g~~~~a~~~~~~~~~~ 186 (531)
.+..++...|++++|...|++....
T Consensus 104 ~~a~~~~~~~~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 104 RRSQALEKLGRLDQAVLDLQRCVSL 128 (148)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 7888888888888888888888775
No 166
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.22 E-value=5.9e-06 Score=63.08 Aligned_cols=96 Identities=8% Similarity=-0.161 Sum_probs=61.0
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCcchHHHHHHHHHHCCCCCChhhHHHHHHHHH
Q 038190 89 SFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLC 168 (531)
Q Consensus 89 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 168 (531)
.+..+...+.+.|++++|+..|++..+.. +.+...|..+..++...|++++|...|+++++..+. +...+..+..++.
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~~~~~la~~~~ 96 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK-DIAVHAALAVSHT 96 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHH
Confidence 34445556666677777777777766654 345566666666666777777777777766665432 4556666666666
Q ss_pred hcCChHHHHHHHHHHHHc
Q 038190 169 MQGKFTEASGLFTKFVAF 186 (531)
Q Consensus 169 ~~g~~~~a~~~~~~~~~~ 186 (531)
..|++++|+..|++....
T Consensus 97 ~~g~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 97 NEHNANAALASLRAWLLS 114 (121)
T ss_dssp HHHHHHHHHHHHHHHHC-
T ss_pred HcCCHHHHHHHHHHHHHh
Confidence 777777777777666543
No 167
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.21 E-value=1.4e-05 Score=67.28 Aligned_cols=131 Identities=14% Similarity=-0.013 Sum_probs=90.4
Q ss_pred HhhHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCC---------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 038190 279 VLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPD---------------VVVYSSLIDGYCLMGRIDDARKLFVSIESE 343 (531)
Q Consensus 279 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---------------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 343 (531)
...+..+...+...|++++|...|++..+...... ...+..+..+|...|++++|...+++..+.
T Consensus 38 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 117 (198)
T 2fbn_A 38 AFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKI 117 (198)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 44567777888889999999999998887521111 267777788888888888888888888876
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChH
Q 038190 344 GCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLR 423 (531)
Q Consensus 344 g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 423 (531)
... +...+..+..+|...|++++|...|++..+.. |+ +..++..+..++...++.+
T Consensus 118 ~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~---------------------~~~~~~~l~~~~~~~~~~~ 173 (198)
T 2fbn_A 118 DKN-NVKALYKLGVANMYFGFLEEAKENLYKAASLN--PN---------------------NLDIRNSYELCVNKLKEAR 173 (198)
T ss_dssp STT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS--TT---------------------CHHHHHHHHHHHHHHHHHH
T ss_pred Ccc-cHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC--CC---------------------cHHHHHHHHHHHHHHHHHH
Confidence 432 66777888888888888888888888877632 32 5667777777777666666
Q ss_pred HHH-HHHHHhh
Q 038190 424 SAW-ELFKKLP 433 (531)
Q Consensus 424 ~A~-~~~~~~~ 433 (531)
++. ..|..+.
T Consensus 174 ~~~~~~~~~~f 184 (198)
T 2fbn_A 174 KKDKLTFGGMF 184 (198)
T ss_dssp C----------
T ss_pred HHHHHHHHHHh
Confidence 655 4444444
No 168
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.21 E-value=1.9e-05 Score=75.63 Aligned_cols=207 Identities=12% Similarity=-0.045 Sum_probs=143.4
Q ss_pred HHHHHccCCHHHHHHHHHHHHhCCCCCC----------------HhhHHHHHHHHHccCCcchHHHHHHHHHHCCCCC-C
Q 038190 94 LGALAGKKYYVNFICLSERLNTIGLLPD----------------FVSLNILMNCFCKMIGVSDAFVALGRILRKVFSP-D 156 (531)
Q Consensus 94 i~~~~~~~~~~~a~~~~~~m~~~g~~~~----------------~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~-~ 156 (531)
...+.+.|++++|++.|..+.+...... ...+..+...|...|++++|.+.+..+.+.-... +
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~ 90 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK 90 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence 4456788999999999999987642211 1247788999999999999999998876532111 1
Q ss_pred h----hhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCC-CcHHhHHHHHHHHHhcCChhHHHHHHHHHhhC--CC--
Q 038190 157 V----VTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVI-PNVICYASIIDGLCKDGFVNKVRVLFLDMKGR--GI-- 227 (531)
Q Consensus 157 ~----~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~--g~-- 227 (531)
. .+.+.+...+...|+++.|..+++............ .-..++..+...|...|++++|..+++++... +.
T Consensus 91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~ 170 (434)
T 4b4t_Q 91 SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDD 170 (434)
T ss_dssp HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSC
T ss_pred hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhccc
Confidence 1 233334444556789999999998876532111111 13557888999999999999999999887542 11
Q ss_pred CC-CHhhHHHHHHHHHhcCChhhhhcchHHHHHHHHHHHhCCCCCCccccCCHhhHHHHHHHHhcCCCHHHHHHHHHHHH
Q 038190 228 YP-DAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMK 306 (531)
Q Consensus 228 ~p-~~~~~~~li~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 306 (531)
.+ ...++..++..|...|++++|...+.+++.+....... ...-...+..+...+...+++++|...|.+..
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~-------~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~ 243 (434)
T 4b4t_Q 171 KPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCP-------TQTVAELDLMSGILHCEDKDYKTAFSYFFESF 243 (434)
T ss_dssp STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCC-------HHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCc-------hHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 11 24567888899999999999999777776655432110 01113456777788889999999998887765
Q ss_pred h
Q 038190 307 S 307 (531)
Q Consensus 307 ~ 307 (531)
+
T Consensus 244 ~ 244 (434)
T 4b4t_Q 244 E 244 (434)
T ss_dssp H
T ss_pred H
Confidence 4
No 169
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.20 E-value=1.8e-05 Score=59.06 Aligned_cols=97 Identities=10% Similarity=-0.057 Sum_probs=45.1
Q ss_pred hhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCcchHHHHHHHHHHCCCC-CChhhHHHHHHH
Q 038190 88 PSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFS-PDVVTLGCLIRG 166 (531)
Q Consensus 88 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~ 166 (531)
..|..+...+...|++++|+..+++..+.. +.+..++..+..++...|++++|...++++.+.... .+..++..+..+
T Consensus 7 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~ 85 (112)
T 2kck_A 7 EEYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADA 85 (112)
T ss_dssp TGGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHH
Confidence 344445555555555555555555554432 223444444444444455555555555544443211 023344444444
Q ss_pred HHhc-CChHHHHHHHHHHHH
Q 038190 167 LCMQ-GKFTEASGLFTKFVA 185 (531)
Q Consensus 167 ~~~~-g~~~~a~~~~~~~~~ 185 (531)
+... |++++|++.+++...
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~ 105 (112)
T 2kck_A 86 LRYIEGKEVEAEIAEARAKL 105 (112)
T ss_dssp HTTCSSCSHHHHHHHHHHGG
T ss_pred HHHHhCCHHHHHHHHHHHhh
Confidence 4444 445555444444443
No 170
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.19 E-value=2.9e-05 Score=60.54 Aligned_cols=101 Identities=9% Similarity=-0.121 Sum_probs=80.3
Q ss_pred CCCHhhHHHHHHHHHccCCcchHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCCCcHHh
Q 038190 119 LPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVIC 198 (531)
Q Consensus 119 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ 198 (531)
+.+...+..+...+...|+++.|...|+..++..+. +...+..+..++...|++++|+..|++.... .|+ +...
T Consensus 6 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~p~---~~~~ 79 (137)
T 3q49_B 6 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPL-VAVYYTNRALCYLKMQQPEQALADCRRALEL--DGQ---SVKA 79 (137)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTT---CHHH
T ss_pred cccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcC-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--Cch---hHHH
Confidence 345667888888888888888888888888877533 5678888888888888888888888888876 342 6778
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHhhC
Q 038190 199 YASIIDGLCKDGFVNKVRVLFLDMKGR 225 (531)
Q Consensus 199 ~~~l~~~~~~~~~~~~a~~~~~~m~~~ 225 (531)
|..+..++...|++++|...|++..+.
T Consensus 80 ~~~l~~~~~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 80 HFFLGQCQLEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 888888888888888888888887653
No 171
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.17 E-value=1.7e-05 Score=61.17 Aligned_cols=98 Identities=8% Similarity=0.011 Sum_probs=62.9
Q ss_pred hhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCcchHHHHHHHHHHCCCC--CC----hhhHH
Q 038190 88 PSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFS--PD----VVTLG 161 (531)
Q Consensus 88 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~--~~----~~~~~ 161 (531)
..|..+...+...|++++|+..|++..+.. +.+..++..+..++...|++++|...++.+.+.... ++ ..++.
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 355666666777777777777777776654 345566666666777777777777777766654321 11 44566
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHc
Q 038190 162 CLIRGLCMQGKFTEASGLFTKFVAF 186 (531)
Q Consensus 162 ~li~~~~~~g~~~~a~~~~~~~~~~ 186 (531)
.+..++...|++++|...|++....
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~~ 108 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLAE 108 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHh
Confidence 6666666677777777777666654
No 172
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.17 E-value=1.3e-06 Score=84.22 Aligned_cols=148 Identities=13% Similarity=0.049 Sum_probs=100.1
Q ss_pred CHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC---------------HhhHHHHHHH
Q 038190 67 ELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPD---------------FVSLNILMNC 131 (531)
Q Consensus 67 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~---------------~~~~~~li~~ 131 (531)
++++|...|+......+. ....|..+...+.+.|++++|+..|++.++.. +.+ ..+|..+..+
T Consensus 249 ~~~~A~~~~~~~~~~~~~-~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~-p~~~~~~~~~~~~~~~~~~~~~~nla~~ 326 (457)
T 1kt0_A 249 SFEKAKESWEMDTKEKLE-QAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWL-EMEYGLSEKESKASESFLLAAFLNLAMC 326 (457)
T ss_dssp EEECCCCGGGSCHHHHHH-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-TTCCSCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcccCcchhhcCHHHHHH-HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh-cccccCChHHHHHHHHHHHHHHHHHHHH
Confidence 344555555444332222 45577888888899999999999999987753 222 4677777777
Q ss_pred HHccCCcchHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCCCcHHhHHHHHHHHHhcCC
Q 038190 132 FCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGF 211 (531)
Q Consensus 132 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 211 (531)
|.+.|++++|+..++++++..+. +..+|..+..+|...|++++|+..|++.... .|+ +..++..+..++.+.++
T Consensus 327 ~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l--~P~---~~~a~~~l~~~~~~~~~ 400 (457)
T 1kt0_A 327 YLKLREYTKAVECCDKALGLDSA-NEKGLYRRGEAQLLMNEFESAKGDFEKVLEV--NPQ---NKAARLQISMCQKKAKE 400 (457)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--C-------CHHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCC---CHHHHHHHHHHHHHHHH
Confidence 88888888888888888776533 5667777778888888888888888887765 342 55677777777777777
Q ss_pred hhHHHH-HHHHH
Q 038190 212 VNKVRV-LFLDM 222 (531)
Q Consensus 212 ~~~a~~-~~~~m 222 (531)
.+++.+ .+..|
T Consensus 401 ~~~a~~~~~~~~ 412 (457)
T 1kt0_A 401 HNERDRRIYANM 412 (457)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHHHH
Confidence 766653 33444
No 173
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.15 E-value=2.2e-05 Score=60.55 Aligned_cols=115 Identities=10% Similarity=0.027 Sum_probs=85.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHH
Q 038190 314 VVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAEL 393 (531)
Q Consensus 314 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~ 393 (531)
...+..+...+...|++++|...|++..+.... +...+..+...|...|++++|...+++..+....
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~------------ 70 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPT-NMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRE------------ 70 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH------------
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccc------------
Confidence 345666777788888888888888888776432 6677888888888899999999988887663210
Q ss_pred HHHHHhCCCCCC----HHHHHHHHHHHHcCCChHHHHHHHHHhhhCCCCCcHHHHHHHHHHH
Q 038190 394 FRTLHNTKFELD----LTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGL 451 (531)
Q Consensus 394 ~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~ 451 (531)
..++ ..++..+..+|...|++++|...|+++.+. .|+...+..+..+.
T Consensus 71 --------~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~ 122 (131)
T 1elr_A 71 --------NREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAE--HRTPDVLKKCQQAE 122 (131)
T ss_dssp --------STTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHH
T ss_pred --------cchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCHHHHHHHHHHH
Confidence 0012 667888999999999999999999999885 45665555554443
No 174
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.14 E-value=8.4e-06 Score=78.87 Aligned_cols=115 Identities=10% Similarity=-0.005 Sum_probs=86.0
Q ss_pred CcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCcchHHH
Q 038190 64 GEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFV 143 (531)
Q Consensus 64 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~ 143 (531)
..|++++|...|+++.+..+. +..+|..+..++.+.|++++|++.+++..+.. +.+..++..+..+|...|++++|..
T Consensus 18 ~~g~~~~A~~~~~~Al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~~~eA~~ 95 (477)
T 1wao_1 18 KAKDYENAIKFYSQAIELNPS-NAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKFRAALR 95 (477)
T ss_dssp TTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HhCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 456899999999988887665 67788888888888899999999998888775 4467788888888888888888888
Q ss_pred HHHHHHHCCCCCChhhHHHHHHH--HHhcCChHHHHHHHH
Q 038190 144 ALGRILRKVFSPDVVTLGCLIRG--LCMQGKFTEASGLFT 181 (531)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~li~~--~~~~g~~~~a~~~~~ 181 (531)
.|+++++..+. +...+..+..+ +.+.|++++|++.++
T Consensus 96 ~~~~al~~~p~-~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 96 DYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHSTT-CTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 88888876432 44455555555 777788888888877
No 175
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.14 E-value=2e-05 Score=60.11 Aligned_cols=96 Identities=10% Similarity=-0.065 Sum_probs=81.5
Q ss_pred hHHHHHHHHHccCCcchHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCCCcHHhHHHHH
Q 038190 124 SLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASII 203 (531)
Q Consensus 124 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~ 203 (531)
.+..+...+.+.|++++|...|+++++..+. +...|..+..++...|++++|+..|++.... .|+ +...+..+.
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l--~P~---~~~~~~~la 92 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPE-REEAWRSLGLTQAENEKDGLAIIALNHARML--DPK---DIAVHAALA 92 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTT---CHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCC---CHHHHHHHH
Confidence 4556677888899999999999999987543 7788888999999999999999999999887 453 677889999
Q ss_pred HHHHhcCChhHHHHHHHHHhhC
Q 038190 204 DGLCKDGFVNKVRVLFLDMKGR 225 (531)
Q Consensus 204 ~~~~~~~~~~~a~~~~~~m~~~ 225 (531)
.++...|++++|...|++..+.
T Consensus 93 ~~~~~~g~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 93 VSHTNEHNANAALASLRAWLLS 114 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHcCCHHHHHHHHHHHHHh
Confidence 9999999999999999998764
No 176
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.11 E-value=0.00017 Score=56.92 Aligned_cols=100 Identities=12% Similarity=-0.019 Sum_probs=86.8
Q ss_pred cCCHhhHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHH
Q 038190 276 HPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPD----VVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSS 351 (531)
Q Consensus 276 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~ 351 (531)
+.+...+..+...+...|++++|...|++..+. .|+ ...+..+...|...|++++|...+++..+.... +...
T Consensus 25 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~ 101 (148)
T 2dba_A 25 ASSVEQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGG-DVKA 101 (148)
T ss_dssp CCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSC-CHHH
T ss_pred hHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCcc-CHHH
Confidence 345677888999999999999999999999876 455 677888889999999999999999999887433 6778
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 038190 352 YNTLINSYSKIEKVEEALSLYGEMISM 378 (531)
Q Consensus 352 ~~~li~~~~~~~~~~~a~~~~~~~~~~ 378 (531)
+..+..+|...|++++|...|++..+.
T Consensus 102 ~~~~a~~~~~~~~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 102 LYRRSQALEKLGRLDQAVLDLQRCVSL 128 (148)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 888999999999999999999998874
No 177
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.11 E-value=9e-05 Score=56.97 Aligned_cols=95 Identities=14% Similarity=-0.037 Sum_probs=59.7
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHhCCCCCCH---hhHHHHHHHHHccCCcchHHHHHHHHHHCCCCCC--hhhHHHHHH
Q 038190 91 NSLLGALAGKKYYVNFICLSERLNTIGLLPDF---VSLNILMNCFCKMIGVSDAFVALGRILRKVFSPD--VVTLGCLIR 165 (531)
Q Consensus 91 ~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~---~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~li~ 165 (531)
..+...+...|++++|+..|+++.+.. +.+. ..+..+..++.+.|++++|...|+.+++..+... ..++..+..
T Consensus 6 ~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~ 84 (129)
T 2xev_A 6 YNVAFDALKNGKYDDASQLFLSFLELY-PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGL 84 (129)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHC-CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHH
Confidence 344555666777777777777776643 2222 3566666667777777777777777766543211 445566666
Q ss_pred HHHhcCChHHHHHHHHHHHHc
Q 038190 166 GLCMQGKFTEASGLFTKFVAF 186 (531)
Q Consensus 166 ~~~~~g~~~~a~~~~~~~~~~ 186 (531)
++...|++++|...|+++...
T Consensus 85 ~~~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 85 SQYGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHH
Confidence 777777777777777777664
No 178
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.10 E-value=1e-05 Score=77.78 Aligned_cols=137 Identities=7% Similarity=-0.105 Sum_probs=105.1
Q ss_pred HHHhcCChHHHHHHHHHHHHcC---CCCCCCCcHHhHHHHHHHHHhcCChhHHHHHHHHHhhC-----CC-CC-CHhhHH
Q 038190 166 GLCMQGKFTEASGLFTKFVAFD---CRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGR-----GI-YP-DAFVYN 235 (531)
Q Consensus 166 ~~~~~g~~~~a~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~-----g~-~p-~~~~~~ 235 (531)
.+...|++++|+.++++..... ..++......+++.|..+|...|++++|..++++..+. |. .| ...+++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 3557899999999998887542 22222123458999999999999999999999886532 21 12 346688
Q ss_pred HHHHHHHhcCChhhhhcchHHHHHHHHHHHhCCCCCCccccCCHhhHHHHHHHHhcCCCHHHHHHHHHHHHhC
Q 038190 236 SLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSR 308 (531)
Q Consensus 236 ~li~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 308 (531)
.|...|...|++++|...+++|+++++.....+ .+....+.+.+..++...+.+++|+.+|..+++.
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~------Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~ 464 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPS------HPITKDLEAMRMQTEMELRMFRQNEFMYHKMREA 464 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTT------SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCC------ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999999999999999887665 3334455666777788888899999999888753
No 179
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.10 E-value=3.3e-06 Score=81.71 Aligned_cols=124 Identities=10% Similarity=-0.017 Sum_probs=98.6
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCcchHHHHHHHHHHCCCCCChhhHHHHHHHHHh
Q 038190 90 FNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCM 169 (531)
Q Consensus 90 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 169 (531)
|..+...+.+.|++++|++.|++..+.. +.+..+|..+..++.+.|++++|...++++++..+. +..++..+..+|..
T Consensus 9 ~~~lg~~~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~lg~~~~~ 86 (477)
T 1wao_1 9 LKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKK-YIKGYYRRAASNMA 86 (477)
T ss_dssp SSSSSSSTTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTT-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHH
Confidence 3344455678899999999999998874 456889999999999999999999999999998543 67889999999999
Q ss_pred cCChHHHHHHHHHHHHcCCCCCCCCcHHhHHHHHHH--HHhcCChhHHHHHHH
Q 038190 170 QGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDG--LCKDGFVNKVRVLFL 220 (531)
Q Consensus 170 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~a~~~~~ 220 (531)
.|++++|++.|++..+. .|+ +...+..+..+ +.+.|++++|.+.++
T Consensus 87 ~g~~~eA~~~~~~al~~--~p~---~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 87 LGKFRAALRDYETVVKV--KPH---DKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HTCHHHHHHHHHHHHHH--STT---CTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred cCCHHHHHHHHHHHHHh--CCC---CHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 99999999999999886 342 44556666555 888899999999988
No 180
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.09 E-value=3.1e-05 Score=62.29 Aligned_cols=136 Identities=15% Similarity=0.074 Sum_probs=89.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-CC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHH
Q 038190 316 VYSSLIDGYCLMGRIDDARKLFVSIESEGCI-PD----TSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEA 390 (531)
Q Consensus 316 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~-p~----~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~a 390 (531)
++..+...|...|++++|...+++..+.... ++ ..++..+...|...|++++|...+++..+..
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~----------- 79 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLA----------- 79 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-----------
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-----------
Confidence 4455555666666666666666665442110 01 1356677778888888888888887765421
Q ss_pred HHHHHHHHhCCC-CCCHHHHHHHHHHHHcCCChHHHHHHHHHhhhC----CCCC-cHHHHHHHHHHHHHcCCHHHHHHHH
Q 038190 391 AELFRTLHNTKF-ELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRY----GPEP-NVVTYTVMICGLCIEGGIEKAYDLL 464 (531)
Q Consensus 391 ~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~ 464 (531)
. +.+. .....++..+...+...|++++|...+++..+. +..+ ....+..+...+...|++++|.+.+
T Consensus 80 ----~---~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 152 (164)
T 3ro3_A 80 ----R---QLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFA 152 (164)
T ss_dssp ----H---HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred ----H---HhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHH
Confidence 0 0000 012456788899999999999999999988752 1111 2456778888899999999999888
Q ss_pred HHHHH
Q 038190 465 PDMEE 469 (531)
Q Consensus 465 ~~~~~ 469 (531)
++..+
T Consensus 153 ~~a~~ 157 (164)
T 3ro3_A 153 EKHLE 157 (164)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 76543
No 181
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.07 E-value=6e-06 Score=62.61 Aligned_cols=25 Identities=8% Similarity=-0.091 Sum_probs=9.7
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHH
Q 038190 90 FNSLLGALAGKKYYVNFICLSERLN 114 (531)
Q Consensus 90 ~~~li~~~~~~~~~~~a~~~~~~m~ 114 (531)
|..+...+...|++++|+..|++..
T Consensus 30 ~~~lg~~~~~~~~~~~A~~~~~~al 54 (117)
T 3k9i_A 30 YLGLGSTFRTLGEYRKAEAVLANGV 54 (117)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3333333333344444444443333
No 182
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.05 E-value=1.7e-05 Score=63.86 Aligned_cols=136 Identities=12% Similarity=-0.026 Sum_probs=82.6
Q ss_pred hhHHHHHHHHHccCCHHHHHHHHHHHHhCCCC-CC----HhhHHHHHHHHHccCCcchHHHHHHHHHHCCCC-C----Ch
Q 038190 88 PSFNSLLGALAGKKYYVNFICLSERLNTIGLL-PD----FVSLNILMNCFCKMIGVSDAFVALGRILRKVFS-P----DV 157 (531)
Q Consensus 88 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~-~~----~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~-~----~~ 157 (531)
.++..+...+...|++++|+..+++..+.... .+ ..++..+...+...|++++|...+++..+.... . ..
T Consensus 10 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 89 (164)
T 3ro3_A 10 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEA 89 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHH
Confidence 35667777777888888888888877543211 11 135666777777778888888777776653211 0 13
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-CCCcHHhHHHHHHHHHhcCChhHHHHHHHHHh
Q 038190 158 VTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPN-VIPNVICYASIIDGLCKDGFVNKVRVLFLDMK 223 (531)
Q Consensus 158 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 223 (531)
.++..+..++...|++++|...+++........+ ......++..+...+...|++++|.+.+++..
T Consensus 90 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 156 (164)
T 3ro3_A 90 QSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHL 156 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 4566666777777777777777776654311110 00113345566666666677777776666654
No 183
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.05 E-value=2.4e-05 Score=75.16 Aligned_cols=133 Identities=6% Similarity=-0.045 Sum_probs=101.5
Q ss_pred HHHhcCChhHHHHHHHHHhhC---CCCC----CHhhHHHHHHHHHhcCChhhhhcchHHHHHHHHHHHhCCCCCCccccC
Q 038190 205 GLCKDGFVNKVRVLFLDMKGR---GIYP----DAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHP 277 (531)
Q Consensus 205 ~~~~~~~~~~a~~~~~~m~~~---g~~p----~~~~~~~li~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~ 277 (531)
.+...|++++|..++++..+. -+.+ ...+++.+..+|...|++++|...+++++++++...... .+-
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~------Hp~ 391 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHN------NAQ 391 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTT------CHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCC------CHH
Confidence 356789999999999887542 1222 246788999999999999999999999999998887665 444
Q ss_pred CHhhHHHHHHHHhcCCCHHHHHHHHHHHHhC-----C--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 038190 278 DVLSYCSIINSLCKDVLVDKAKELFLDMKSR-----G--IIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESE 343 (531)
Q Consensus 278 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~--~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 343 (531)
...+++.|...|...|++++|..++++..+- | .+....+.+.+-.++...+.++.|+.+|.++.+.
T Consensus 392 ~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~ 464 (490)
T 3n71_A 392 LGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREA 464 (490)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677999999999999999999999887642 2 1112334455666777778888888888887653
No 184
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.01 E-value=7.2e-06 Score=62.18 Aligned_cols=106 Identities=12% Similarity=-0.027 Sum_probs=80.9
Q ss_pred ccCCHHHHHHHHHHHHhCC--CCCCHhhHHHHHHHHHccCCcchHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHH
Q 038190 99 GKKYYVNFICLSERLNTIG--LLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEA 176 (531)
Q Consensus 99 ~~~~~~~a~~~~~~m~~~g--~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 176 (531)
..|++++|+..|++.++.+ -+.+..++..+..++...|++++|...|+++++..+. +..++..+..++...|++++|
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A 80 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPN-HQALRVFYAMVLYNLGRYEQG 80 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHcCCHHHH
Confidence 3578888889998888764 1334567889999999999999999999999998644 678889999999999999999
Q ss_pred HHHHHHHHHcCCCCCCCCcHHhHHHHHHHHHh
Q 038190 177 SGLFTKFVAFDCRPNVIPNVICYASIIDGLCK 208 (531)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 208 (531)
+..|++........ ++...|...+..|..
T Consensus 81 ~~~~~~al~~~p~~---~~~~~~~~ai~~~~~ 109 (117)
T 3k9i_A 81 VELLLKIIAETSDD---ETIQSYKQAILFYAD 109 (117)
T ss_dssp HHHHHHHHHHHCCC---HHHHHTHHHHHHHTT
T ss_pred HHHHHHHHHhCCCc---HHHHHHHHHHHHHHH
Confidence 99999998864332 355556666665554
No 185
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.01 E-value=4.6e-05 Score=70.94 Aligned_cols=120 Identities=12% Similarity=-0.027 Sum_probs=61.6
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHhC---------------CCCCCHhhHHHHHHHHHccCCcchHHHHHHHHHHCCC
Q 038190 89 SFNSLLGALAGKKYYVNFICLSERLNTI---------------GLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVF 153 (531)
Q Consensus 89 ~~~~li~~~~~~~~~~~a~~~~~~m~~~---------------g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 153 (531)
.|..+...+.+.|++++|+..|++.++. --+.+..+|..+..++.+.|++++|...++++++..+
T Consensus 225 ~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p 304 (370)
T 1ihg_A 225 DLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDP 304 (370)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCT
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCc
Confidence 3556666677777777777777776641 0011233445555555555555555555555554432
Q ss_pred CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCCCcHHhHHHHHHHHHhcCChhH
Q 038190 154 SPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNK 214 (531)
Q Consensus 154 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 214 (531)
. +..++..+..+|...|++++|+..|++..+. .|+ +...+..+...+...++.++
T Consensus 305 ~-~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l--~P~---~~~~~~~l~~~~~~~~~~~~ 359 (370)
T 1ihg_A 305 S-NTKALYRRAQGWQGLKEYDQALADLKKAQEI--APE---DKAIQAELLKVKQKIKAQKD 359 (370)
T ss_dssp T-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTT---CHHHHHHHHHHHHHHHHHHH
T ss_pred h-hHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCC---CHHHHHHHHHHHHHHHHHHH
Confidence 1 3444555555555555555555555555543 221 33444444444444444333
No 186
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=97.97 E-value=4.7e-05 Score=61.51 Aligned_cols=99 Identities=12% Similarity=0.025 Sum_probs=59.7
Q ss_pred hhhHHHHHHHHHccCCHHHHHHHHHHHHhC-------CC----------CCCHhhHHHHHHHHHccCCcchHHHHHHHHH
Q 038190 87 MPSFNSLLGALAGKKYYVNFICLSERLNTI-------GL----------LPDFVSLNILMNCFCKMIGVSDAFVALGRIL 149 (531)
Q Consensus 87 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-------g~----------~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 149 (531)
...+......+.+.|++++|+..|.+.+.. .- +.+..+|..+..++.+.|+++.|...++.++
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al 90 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL 90 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 345677777888899999999998887754 00 1122345555555555666666666666555
Q ss_pred HCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 038190 150 RKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAF 186 (531)
Q Consensus 150 ~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 186 (531)
+..+. +...|..+..+|...|++++|+..|++....
T Consensus 91 ~~~p~-~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 91 KREET-NEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hcCCc-chHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 54322 4445555555566666666666666555554
No 187
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.97 E-value=0.00097 Score=65.72 Aligned_cols=189 Identities=10% Similarity=-0.012 Sum_probs=136.4
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC----------HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc
Q 038190 293 VLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGR----------IDDARKLFVSIESEGCIPDTSSYNTLINSYSKI 362 (531)
Q Consensus 293 ~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~----------~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~ 362 (531)
...++|++.++++...+.. +...|+.--.++...|+ ++++.+.++.+.+...+ +..+|+.-...+.+.
T Consensus 43 ~~~eeal~~~~~~l~~nP~-~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK-~y~aW~hR~w~l~~l 120 (567)
T 1dce_A 43 ELDESVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCWLLSRL 120 (567)
T ss_dssp CCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHc
Confidence 3456889999999886422 55666666666666666 99999999999988766 888898888888888
Q ss_pred C--CHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCC-ChHHHHHHHHHhhhCCCCC
Q 038190 363 E--KVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSW-RLRSAWELFKKLPRYGPEP 439 (531)
Q Consensus 363 ~--~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~g~~p 439 (531)
+ +++++++.++++.+.. | -|..+|+....++.+.| .++++++.++++.+..+.
T Consensus 121 ~~~~~~~el~~~~k~l~~d--~---------------------~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~- 176 (567)
T 1dce_A 121 PEPNWARELELCARFLEAD--E---------------------RNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS- 176 (567)
T ss_dssp SSCCHHHHHHHHHHHHHHC--T---------------------TCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC-
T ss_pred ccccHHHHHHHHHHHHhhc--c---------------------ccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCC-
Confidence 8 7799999999998854 2 28899999999999999 899999999999986433
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChhH
Q 038190 440 NVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHE 511 (531)
Q Consensus 440 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~i~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 511 (531)
|...|+.....+...++..++..- ..+ ..+.++++++++++++... +-+...|..+..++.+.|+.++
T Consensus 177 n~saW~~r~~ll~~l~~~~~~~~~-~~~--~~~~~~eel~~~~~ai~~~-P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 177 NYSSWHYRSCLLPQLHPQPDSGPQ-GRL--PENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp CHHHHHHHHHHHHHHSCCCCSSSC-CSS--CHHHHHHHHHHHHHHHHHC-SSCSHHHHHHHHHHSCCCCCSC
T ss_pred CccHHHHHHHHHHhhccccccccc-ccc--cHHHHHHHHHHHHHHHhhC-CCCccHHHHHHHHHhcCCCccc
Confidence 778888877777664211000000 000 0023455666666666554 3367889999999998888655
No 188
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=97.96 E-value=0.00014 Score=69.94 Aligned_cols=88 Identities=11% Similarity=0.045 Sum_probs=67.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHH
Q 038190 349 TSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWEL 428 (531)
Q Consensus 349 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 428 (531)
...|..+..+|.+.|++++|+..+++..+.. |+ +...|..+..+|...|++++|...
T Consensus 317 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~--p~---------------------~~~a~~~~g~a~~~~g~~~~A~~~ 373 (457)
T 1kt0_A 317 LAAFLNLAMCYLKLREYTKAVECCDKALGLD--SA---------------------NEKGLYRRGEAQLLMNEFESAKGD 373 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TT---------------------CHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC--Cc---------------------cHHHHHHHHHHHHHccCHHHHHHH
Confidence 4677788888888889988888888887632 32 678888888999999999999999
Q ss_pred HHHhhhCCCCC-cHHHHHHHHHHHHHcCCHHHHH
Q 038190 429 FKKLPRYGPEP-NVVTYTVMICGLCIEGGIEKAY 461 (531)
Q Consensus 429 ~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~ 461 (531)
|+++++. .| +...+..+..++.+.|+.++|.
T Consensus 374 ~~~al~l--~P~~~~a~~~l~~~~~~~~~~~~a~ 405 (457)
T 1kt0_A 374 FEKVLEV--NPQNKAARLQISMCQKKAKEHNERD 405 (457)
T ss_dssp HHHHHTT--C----CHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHh--CCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 9988874 34 4567777777888888777665
No 189
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=97.94 E-value=0.00025 Score=54.37 Aligned_cols=96 Identities=19% Similarity=0.035 Sum_probs=78.6
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC--HHHHHHHH
Q 038190 282 YCSIINSLCKDVLVDKAKELFLDMKSRGIIPDV---VVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPD--TSSYNTLI 356 (531)
Q Consensus 282 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~--~~~~~~li 356 (531)
+..+...+...|++++|...|+.+.+.... +. ..+..+..+|...|++++|...|+++.+...... ...+..+.
T Consensus 5 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la 83 (129)
T 2xev_A 5 AYNVAFDALKNGKYDDASQLFLSFLELYPN-GVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLG 83 (129)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCSS-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHCCC-CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHH
Confidence 445677888999999999999999875321 22 4777788899999999999999999988753311 56678888
Q ss_pred HHHHhcCCHHHHHHHHHHHHhC
Q 038190 357 NSYSKIEKVEEALSLYGEMISM 378 (531)
Q Consensus 357 ~~~~~~~~~~~a~~~~~~~~~~ 378 (531)
.+|...|++++|...|+.+.+.
T Consensus 84 ~~~~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 84 LSQYGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHH
Confidence 9999999999999999999874
No 190
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=97.93 E-value=0.00016 Score=58.34 Aligned_cols=67 Identities=21% Similarity=0.269 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHH
Q 038190 349 TSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWEL 428 (531)
Q Consensus 349 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 428 (531)
...|..+..+|.+.|++++|+..+++..+. .|+ +...|..+..+|...|++++|...
T Consensus 63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~--~p~---------------------~~~a~~~~g~~~~~~g~~~~A~~~ 119 (162)
T 3rkv_A 63 IPLYANMSQCYLNIGDLHEAEETSSEVLKR--EET---------------------NEKALFRRAKARIAAWKLDEAEED 119 (162)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--STT---------------------CHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhc--CCc---------------------chHHHHHHHHHHHHHhcHHHHHHH
Confidence 456777777888888888888888877763 232 677788888888888888888888
Q ss_pred HHHhhhCCCCCc
Q 038190 429 FKKLPRYGPEPN 440 (531)
Q Consensus 429 ~~~~~~~g~~p~ 440 (531)
|++..+. .|+
T Consensus 120 ~~~al~l--~p~ 129 (162)
T 3rkv_A 120 LKLLLRN--HPA 129 (162)
T ss_dssp HHHHHHH--CGG
T ss_pred HHHHHhc--CCC
Confidence 8888774 454
No 191
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.93 E-value=0.00021 Score=70.36 Aligned_cols=174 Identities=9% Similarity=-0.081 Sum_probs=141.8
Q ss_pred CHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCC----------HHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccC
Q 038190 67 ELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKY----------YVNFICLSERLNTIGLLPDFVSLNILMNCFCKMI 136 (531)
Q Consensus 67 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~----------~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g 136 (531)
..++|+..++.+...+|. +..+|+.--.++...|+ ++++++.++.+.+.. +-+..+|+.-..++.+.+
T Consensus 44 ~~eeal~~~~~~l~~nP~-~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l~ 121 (567)
T 1dce_A 44 LDESVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLP 121 (567)
T ss_dssp CSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCS
T ss_pred CCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcc
Confidence 567899999999998887 77888887777777777 999999999999876 557778999888899999
Q ss_pred --CcchHHHHHHHHHHCCCCCChhhHHHHHHHHHhcC-ChHHHHHHHHHHHHcCCCCCCCCcHHhHHHHHHHHHhc----
Q 038190 137 --GVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQG-KFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKD---- 209 (531)
Q Consensus 137 --~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---- 209 (531)
++++++..++++++..+. +..+|+....++.+.| .++++++.++++++. .|. +..+|+.....+.+.
T Consensus 122 ~~~~~~el~~~~k~l~~d~~-N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~--~p~---n~saW~~r~~ll~~l~~~~ 195 (567)
T 1dce_A 122 EPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITR--NFS---NYSSWHYRSCLLPQLHPQP 195 (567)
T ss_dssp SCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTT--TCC---CHHHHHHHHHHHHHHSCCC
T ss_pred cccHHHHHHHHHHHHhhccc-cccHHHHHHHHHHHcCCChHHHHHHHHHHHHH--CCC---CccHHHHHHHHHHhhcccc
Confidence 669999999999998644 8889999888889999 899999999999876 443 788898888777663
Q ss_pred ----------CChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChhh
Q 038190 210 ----------GFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWED 249 (531)
Q Consensus 210 ----------~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~ 249 (531)
+.++++++.+++....... +...|...-..+.+.++.++
T Consensus 196 ~~~~~~~~~~~~~~eel~~~~~ai~~~P~-~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 196 DSGPQGRLPENVLLKELELVQNAFFTDPN-DQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp CSSSCCSSCHHHHHHHHHHHHHHHHHCSS-CSHHHHHHHHHHSCCCCCSC
T ss_pred cccccccccHHHHHHHHHHHHHHHhhCCC-CccHHHHHHHHHhcCCCccc
Confidence 4578899999888765322 67778777777777766544
No 192
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.89 E-value=3.9e-05 Score=57.17 Aligned_cols=98 Identities=13% Similarity=-0.010 Sum_probs=79.4
Q ss_pred CHHHHHHHHHHHHcCCChHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 038190 405 DLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECLKAIELLHKM 484 (531)
Q Consensus 405 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~i~~~~~a~~~~~~~ 484 (531)
+...+..+...+...|++++|...|++..+.. +.+...|..+..++...|++++|++.+++..+
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--------------- 66 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLR--------------- 66 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT---------------
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHH---------------
Confidence 56788889999999999999999999998852 33678889999999999999999877765543
Q ss_pred HHcCCCCC-------HHHHHHHHHHHhccCChhHHHhhHHHhhhc
Q 038190 485 AKRYVKPD-------EITVSILEELLNKDENCHECMNLLPSFLSR 522 (531)
Q Consensus 485 ~~~~~~~~-------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 522 (531)
..|+ ...+..+..++...|++++|...+++++..
T Consensus 67 ----~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 107 (111)
T 2l6j_A 67 ----YTSTAEHVAIRSKLQYRLELAQGAVGSVQIPVVEVDELPEG 107 (111)
T ss_dssp ----SCSSTTSHHHHHHHHHHHHHHHHHHHCCCCCSSSSSSCSSS
T ss_pred ----hCCCccHHHHHHHHHHHHHHHHHHHHhHhhhHhHHHHhHHH
Confidence 2344 566777888999999999998888776543
No 193
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.89 E-value=0.00017 Score=67.09 Aligned_cols=89 Identities=11% Similarity=0.004 Sum_probs=69.2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHH
Q 038190 348 DTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWE 427 (531)
Q Consensus 348 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 427 (531)
+...|..+..+|.+.|++++|+..+++..+. .|+ +...|..+..+|...|++++|..
T Consensus 272 ~~~~~~nla~~~~~~g~~~~A~~~~~~al~~--~p~---------------------~~~a~~~lg~~~~~~g~~~eA~~ 328 (370)
T 1ihg_A 272 ALSCVLNIGACKLKMSDWQGAVDSCLEALEI--DPS---------------------NTKALYRRAQGWQGLKEYDQALA 328 (370)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CTT---------------------CHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHHh--Cch---------------------hHHHHHHHHHHHHHccCHHHHHH
Confidence 4567788888889999999999999888864 333 77888899999999999999999
Q ss_pred HHHHhhhCCCCC-cHHHHHHHHHHHHHcCCHHHHH
Q 038190 428 LFKKLPRYGPEP-NVVTYTVMICGLCIEGGIEKAY 461 (531)
Q Consensus 428 ~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~ 461 (531)
.|+++.+. .| +...+..+..++...++.+++.
T Consensus 329 ~l~~Al~l--~P~~~~~~~~l~~~~~~~~~~~~a~ 361 (370)
T 1ihg_A 329 DLKKAQEI--APEDKAIQAELLKVKQKIKAQKDKE 361 (370)
T ss_dssp HHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHh--CCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 99998874 34 5666666777776667666654
No 194
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.86 E-value=3.8e-05 Score=70.64 Aligned_cols=129 Identities=11% Similarity=-0.004 Sum_probs=60.4
Q ss_pred hhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHh------------------hHHHHHHHHHccCCcchHHHHHHHHH
Q 038190 88 PSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFV------------------SLNILMNCFCKMIGVSDAFVALGRIL 149 (531)
Q Consensus 88 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~------------------~~~~li~~~~~~g~~~~a~~~~~~~~ 149 (531)
..|..+...+.+.|++++|+..|++..... |+.. .|..+..++.+.|++++|...+++++
T Consensus 180 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~--p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al 257 (338)
T 2if4_A 180 DRRKMDGNSLFKEEKLEEAMQQYEMAIAYM--GDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVL 257 (338)
T ss_dssp HHHHHHHHHTCSSSCCHHHHHHHHHHHHHS--CHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHh--ccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 345666667777788888888888776542 3322 55566666666666666666666666
Q ss_pred HCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCCCcHHhHHHHHHH-HHhcCChhHHHHHHHHHhh
Q 038190 150 RKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDG-LCKDGFVNKVRVLFLDMKG 224 (531)
Q Consensus 150 ~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~a~~~~~~m~~ 224 (531)
+..+ .+..+|..+..+|...|++++|+..|++.... .|+ +..++..+... ....+..+.+..+|..|..
T Consensus 258 ~~~p-~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l--~p~---~~~a~~~L~~l~~~~~~~~~~a~~~~~~~l~ 327 (338)
T 2if4_A 258 TEEE-KNPKALFRRGKAKAELGQMDSARDDFRKAQKY--APD---DKAIRRELRALAEQEKALYQKQKEMYKGIFK 327 (338)
T ss_dssp HHCT-TCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC----------------------------------------
T ss_pred HhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 6532 24556666666666666666666666666543 221 33344444433 2233445555555555543
No 195
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=97.81 E-value=0.00024 Score=55.90 Aligned_cols=63 Identities=16% Similarity=0.006 Sum_probs=46.9
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHc-----CCCCCCCCcHHhH----HHHHHHHHhcCChhHHHHHHHHHhh
Q 038190 159 TLGCLIRGLCMQGKFTEASGLFTKFVAF-----DCRPNVIPNVICY----ASIIDGLCKDGFVNKVRVLFLDMKG 224 (531)
Q Consensus 159 ~~~~li~~~~~~g~~~~a~~~~~~~~~~-----~~~~~~~~~~~~~----~~l~~~~~~~~~~~~a~~~~~~m~~ 224 (531)
.|..+..++.+.|++++|+..+++.+.. ...|+ +...| .....++...|++++|+..|++..+
T Consensus 59 a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd---~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 59 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQD---EGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTST---HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCc---hHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 7777777888888888888888777764 11332 56677 7888888888888888888887754
No 196
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=97.81 E-value=0.00019 Score=56.56 Aligned_cols=97 Identities=15% Similarity=-0.024 Sum_probs=74.0
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHhCCCCC------CH-----hhHHHHHHHHHccCCcchHHHHHHHHHHC------
Q 038190 89 SFNSLLGALAGKKYYVNFICLSERLNTIGLLP------DF-----VSLNILMNCFCKMIGVSDAFVALGRILRK------ 151 (531)
Q Consensus 89 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~------~~-----~~~~~li~~~~~~g~~~~a~~~~~~~~~~------ 151 (531)
.+......+.+.|++++|+..|++.++..... +. ..|..+..++.+.|++++|+..+++.++.
T Consensus 13 ~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e 92 (159)
T 2hr2_A 13 LALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGE 92 (159)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcccc
Confidence 44555666777888888888888887653110 22 27888888888999999999999888876
Q ss_pred -CCCCChhhH----HHHHHHHHhcCChHHHHHHHHHHHHc
Q 038190 152 -VFSPDVVTL----GCLIRGLCMQGKFTEASGLFTKFVAF 186 (531)
Q Consensus 152 -~~~~~~~~~----~~li~~~~~~g~~~~a~~~~~~~~~~ 186 (531)
.+. +...| .....++...|++++|+..|++..+.
T Consensus 93 ~~pd-~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel 131 (159)
T 2hr2_A 93 LNQD-EGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM 131 (159)
T ss_dssp TTST-HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCCc-hHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 432 55677 88889999999999999999998765
No 197
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.80 E-value=0.00086 Score=52.19 Aligned_cols=111 Identities=13% Similarity=-0.023 Sum_probs=81.0
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh----cCCHHHH
Q 038190 293 VLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSK----IEKVEEA 368 (531)
Q Consensus 293 ~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~----~~~~~~a 368 (531)
+++++|.++|++..+.|. ++.. |...|...+.+++|.+.|++..+.| +...+..|...|.. .+++++|
T Consensus 9 ~d~~~A~~~~~~aa~~g~-~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A 80 (138)
T 1klx_A 9 KDLKKAIQYYVKACELNE-MFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKA 80 (138)
T ss_dssp HHHHHHHHHHHHHHHTTC-TTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred cCHHHHHHHHHHHHcCCC-Hhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHH
Confidence 356788888888887762 2332 5566666677888888888887764 56677777777776 6777777
Q ss_pred HHHHHHHHhCCCCCCcccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc----CCChHHHHHHHHHhhhCC
Q 038190 369 LSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCK----SWRLRSAWELFKKLPRYG 436 (531)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~g 436 (531)
+.+|++..+.| ++..+..|...|.. .+++++|..+|++..+.|
T Consensus 81 ~~~~~~Aa~~g-------------------------~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 81 AQYYSKACGLN-------------------------DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHHTT-------------------------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCC-------------------------CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 77777776654 66777778888877 778888888888887765
No 198
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.78 E-value=0.00059 Score=53.17 Aligned_cols=108 Identities=10% Similarity=-0.035 Sum_probs=52.0
Q ss_pred CHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHc----cCCcchHH
Q 038190 67 ELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCK----MIGVSDAF 142 (531)
Q Consensus 67 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~----~g~~~~a~ 142 (531)
++++|+..|++..+.+. ...+ |...|...+.+++|++.|++..+.| +...+..|...|.. .+++++|.
T Consensus 10 d~~~A~~~~~~aa~~g~---~~a~--lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~ 81 (138)
T 1klx_A 10 DLKKAIQYYVKACELNE---MFGC--LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAA 81 (138)
T ss_dssp HHHHHHHHHHHHHHTTC---TTHH--HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred CHHHHHHHHHHHHcCCC---Hhhh--HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHH
Confidence 55555555555555442 1122 4444444445555555555555543 34444444444444 44555555
Q ss_pred HHHHHHHHCCCCCChhhHHHHHHHHHh----cCChHHHHHHHHHHHH
Q 038190 143 VALGRILRKVFSPDVVTLGCLIRGLCM----QGKFTEASGLFTKFVA 185 (531)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~ 185 (531)
.+|++..+.| +...+..|...|.. .+++++|...|++..+
T Consensus 82 ~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~ 125 (138)
T 1klx_A 82 QYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACR 125 (138)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHH
Confidence 5555554443 33444444444444 4455555555544444
No 199
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.76 E-value=8.2e-05 Score=55.95 Aligned_cols=80 Identities=11% Similarity=-0.137 Sum_probs=62.7
Q ss_pred HHHHHHHHHHHcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCcchHHHHHHHHH
Q 038190 70 DALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRIL 149 (531)
Q Consensus 70 ~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 149 (531)
.|+..|+.+.+..+. +...|..+...+...|++++|+..|++..+.. +.+...|..+..++...|++++|...|++.+
T Consensus 3 ~a~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 3 AITERLEAMLAQGTD-NMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp CHHHHHHHHHTTTCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCC-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 567778888776654 67788888888888888888888888887765 4456678888888888888888888888877
Q ss_pred HC
Q 038190 150 RK 151 (531)
Q Consensus 150 ~~ 151 (531)
+.
T Consensus 81 ~~ 82 (115)
T 2kat_A 81 AA 82 (115)
T ss_dssp HH
T ss_pred Hh
Confidence 64
No 200
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.73 E-value=0.00013 Score=67.07 Aligned_cols=145 Identities=13% Similarity=0.106 Sum_probs=86.6
Q ss_pred HhhHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 038190 279 VLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINS 358 (531)
Q Consensus 279 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~ 358 (531)
...+..+...+.+.|++++|...|++..+. .|+... +...|+..++...+ ....|..+..+
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l----------~~~~~~nla~~ 239 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAV----------KNPCHLNIAAC 239 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHH----------HTHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHH----------HHHHHHHHHHH
Confidence 556777888888899999999999887765 333321 22334444443322 12377888999
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHhhhCCCC
Q 038190 359 YSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPE 438 (531)
Q Consensus 359 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~ 438 (531)
|.+.|++++|+..+++..+.. |+ +...|..+..+|...|++++|...|++..+. .
T Consensus 240 ~~~~g~~~~A~~~~~~al~~~--p~---------------------~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l--~ 294 (338)
T 2if4_A 240 LIKLKRYDEAIGHCNIVLTEE--EK---------------------NPKALFRRGKAKAELGQMDSARDDFRKAQKY--A 294 (338)
T ss_dssp HHTTTCCHHHHHHHHHHHHHC--TT---------------------CHHHHHHHHHHHHTTTCHHHHHHHHHHTTC----
T ss_pred HHHcCCHHHHHHHHHHHHHhC--CC---------------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--C
Confidence 999999999999999988742 32 7889999999999999999999999999874 4
Q ss_pred Cc-HHHHHHHHHHHH-HcCCHHHHHHHHHHH
Q 038190 439 PN-VVTYTVMICGLC-IEGGIEKAYDLLPDM 467 (531)
Q Consensus 439 p~-~~~~~~l~~~~~-~~g~~~~A~~~~~~~ 467 (531)
|+ ...+..+..... ..+..+++.++|.+|
T Consensus 295 p~~~~a~~~L~~l~~~~~~~~~~a~~~~~~~ 325 (338)
T 2if4_A 295 PDDKAIRRELRALAEQEKALYQKQKEMYKGI 325 (338)
T ss_dssp -------------------------------
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 43 444444444422 344455555555443
No 201
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.66 E-value=3.2e-05 Score=57.66 Aligned_cols=93 Identities=12% Similarity=-0.070 Sum_probs=55.4
Q ss_pred ChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCcchHHHHHHHHHHCCCCC-C----hhhH
Q 038190 86 FMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSP-D----VVTL 160 (531)
Q Consensus 86 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~-~----~~~~ 160 (531)
+...|..+...+...|++++|+..|++..+.. +.+..++..+..++.+.|++++|...++++++..+.. + ...+
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~ 81 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQ 81 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHH
Confidence 34556666667777777777777777776654 3456666677777777777777777777776653221 0 3334
Q ss_pred HHHHHHHHhcCChHHHHHH
Q 038190 161 GCLIRGLCMQGKFTEASGL 179 (531)
Q Consensus 161 ~~li~~~~~~g~~~~a~~~ 179 (531)
..+..++...|+++.|+..
T Consensus 82 ~~~~~~~~~~~~~~~a~~~ 100 (111)
T 2l6j_A 82 YRLELAQGAVGSVQIPVVE 100 (111)
T ss_dssp HHHHHHHHHHHCCCCCSSS
T ss_pred HHHHHHHHHHHhHhhhHhH
Confidence 4444444444444444433
No 202
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.65 E-value=8.3e-05 Score=58.41 Aligned_cols=96 Identities=10% Similarity=-0.023 Sum_probs=72.9
Q ss_pred cCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCCH----------HHHHHHHHHHHhCCCCCCHhhHHHHHHHHHc
Q 038190 65 EVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYY----------VNFICLSERLNTIGLLPDFVSLNILMNCFCK 134 (531)
Q Consensus 65 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~----------~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~ 134 (531)
.+.+++|+..++...+.+|. +...|..+..++...+++ ++|+..|++.++.. +-+..+|..+..+|..
T Consensus 15 ~~~feeA~~~~~~Ai~l~P~-~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ld-P~~~~A~~~LG~ay~~ 92 (158)
T 1zu2_A 15 ILLFEQIRQDAENTYKSNPL-DADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID-PKKDEAVWCIGNAYTS 92 (158)
T ss_dssp HHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHH
Confidence 34789999999999998877 888888888888887765 48888888888775 4466788888888877
Q ss_pred cC-----------CcchHHHHHHHHHHCCCCCChhhHHHHH
Q 038190 135 MI-----------GVSDAFVALGRILRKVFSPDVVTLGCLI 164 (531)
Q Consensus 135 ~g-----------~~~~a~~~~~~~~~~~~~~~~~~~~~li 164 (531)
.| ++++|...|+++++. .|+...|...+
T Consensus 93 lg~l~P~~~~a~g~~~eA~~~~~kAl~l--~P~~~~y~~al 131 (158)
T 1zu2_A 93 FAFLTPDETEAKHNFDLATQFFQQAVDE--QPDNTHYLKSL 131 (158)
T ss_dssp HHHHCCCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHH
T ss_pred hcccCcchhhhhccHHHHHHHHHHHHHh--CCCCHHHHHHH
Confidence 64 788888888888776 44544444333
No 203
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.58 E-value=0.00034 Score=52.43 Aligned_cols=79 Identities=16% Similarity=0.018 Sum_probs=49.9
Q ss_pred HHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCcchHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 038190 105 NFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFV 184 (531)
Q Consensus 105 ~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 184 (531)
.|+..|++..+.. +.+...+..+..++...|++++|...|+++++..+. +...|..+..+|...|++++|...|++..
T Consensus 3 ~a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 3 AITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPT-YSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp CHHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3555666665543 345566666666677777777777777776665422 45566666666777777777777776665
Q ss_pred H
Q 038190 185 A 185 (531)
Q Consensus 185 ~ 185 (531)
.
T Consensus 81 ~ 81 (115)
T 2kat_A 81 A 81 (115)
T ss_dssp H
T ss_pred H
Confidence 4
No 204
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.53 E-value=0.00052 Score=48.64 Aligned_cols=63 Identities=14% Similarity=0.049 Sum_probs=30.5
Q ss_pred hhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCcchHHHHHHHHHHC
Q 038190 88 PSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRK 151 (531)
Q Consensus 88 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 151 (531)
..|..+...+...|++++|+..|++..+.. +.+..++..+..++.+.|++++|...+++..+.
T Consensus 10 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 72 (91)
T 1na3_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 72 (91)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 344444455555555555555555554432 223344444444444555555555555544443
No 205
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.41 E-value=0.0014 Score=46.37 Aligned_cols=81 Identities=19% Similarity=0.126 Sum_probs=48.2
Q ss_pred HhhHHHHHHHHHccCCcchHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCCCcHHhHHH
Q 038190 122 FVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYAS 201 (531)
Q Consensus 122 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (531)
...+..+...+...|++++|...+++.++..+. +..++..+..++...|++++|+..|++.... .|+ +..++..
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~p~---~~~~~~~ 82 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN-NAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPN---NAEAKQN 82 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTT---CHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--CCC---CHHHHHH
Confidence 345556666666667777777777666665322 4556666666666777777777777666654 232 4445555
Q ss_pred HHHHHHh
Q 038190 202 IIDGLCK 208 (531)
Q Consensus 202 l~~~~~~ 208 (531)
+..++..
T Consensus 83 l~~~~~~ 89 (91)
T 1na3_A 83 LGNAKQK 89 (91)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 5544443
No 206
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.37 E-value=0.00073 Score=63.77 Aligned_cols=92 Identities=13% Similarity=-0.096 Sum_probs=71.8
Q ss_pred cCCChHHHHHHHHHhhh---CCCCCc----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC
Q 038190 418 KSWRLRSAWELFKKLPR---YGPEPN----VVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECLKAIELLHKMAKRYVK 490 (531)
Q Consensus 418 ~~g~~~~A~~~~~~~~~---~g~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~i~~~~~a~~~~~~~~~~~~~ 490 (531)
..|++++|..++++.++ .-+.|+ ..+++.+..+|...|++++|+.++++ ++.++++..-.. .
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~----------aL~i~~~~lG~~-H 378 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQK----------IIKPYSKHYPVY-S 378 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHH----------HHHHHHHHSCSS-C
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHH----------HHHHHHHHcCCC-C
Confidence 46889999999998765 112232 46789999999999999999999864 566676666332 3
Q ss_pred CCH-HHHHHHHHHHhccCChhHHHhhHHHhh
Q 038190 491 PDE-ITVSILEELLNKDENCHECMNLLPSFL 520 (531)
Q Consensus 491 ~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~ 520 (531)
|+. .+++.|+.+|...|++++|..++++..
T Consensus 379 p~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al 409 (433)
T 3qww_A 379 LNVASMWLKLGRLYMGLENKAAGEKALKKAI 409 (433)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Confidence 444 679999999999999999999988743
No 207
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.36 E-value=0.0006 Score=53.55 Aligned_cols=87 Identities=11% Similarity=0.014 Sum_probs=60.5
Q ss_pred HccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCcc----------hHHHHHHHHHHCCCCCChhhHHHHHHHH
Q 038190 98 AGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVS----------DAFVALGRILRKVFSPDVVTLGCLIRGL 167 (531)
Q Consensus 98 ~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~----------~a~~~~~~~~~~~~~~~~~~~~~li~~~ 167 (531)
.+.+.+++|++.+++..+.. +.+...|..+..++...++++ +|+..|++.++..+. +..+|..+..+|
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~-~~~A~~~LG~ay 90 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPK-KDEAVWCIGNAY 90 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcC-cHHHHHHHHHHH
Confidence 45567788888888888775 557778888888888777654 777777777766433 555666677777
Q ss_pred HhcC-----------ChHHHHHHHHHHHHc
Q 038190 168 CMQG-----------KFTEASGLFTKFVAF 186 (531)
Q Consensus 168 ~~~g-----------~~~~a~~~~~~~~~~ 186 (531)
...| ++++|+..|++.++.
T Consensus 91 ~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l 120 (158)
T 1zu2_A 91 TSFAFLTPDETEAKHNFDLATQFFQQAVDE 120 (158)
T ss_dssp HHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhcccCcchhhhhccHHHHHHHHHHHHHh
Confidence 6653 666666666666654
No 208
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.35 E-value=0.0025 Score=46.14 Aligned_cols=65 Identities=20% Similarity=0.002 Sum_probs=56.8
Q ss_pred CHHHHHHHHHHHHcCCChHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 038190 405 DLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK 470 (531)
Q Consensus 405 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 470 (531)
+...+..+..+|...|++++|...|++..+.. +.+...|..+..+|...|++++|++.|++..+.
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 70 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEV 70 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 77889999999999999999999999999853 225678999999999999999999999876654
No 209
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.34 E-value=0.00066 Score=49.35 Aligned_cols=61 Identities=13% Similarity=-0.026 Sum_probs=27.0
Q ss_pred hhHHHHHHHHHccCCcchHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 038190 123 VSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFV 184 (531)
Q Consensus 123 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 184 (531)
.++..+..++...|++++|...|+++++..+. +..+|..+..+|...|++++|+..|++..
T Consensus 8 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al 68 (100)
T 3ma5_A 8 FTRYALAQEHLKHDNASRALALFEELVETDPD-YVGTYYHLGKLYERLDRTDDAIDTYAQGI 68 (100)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34444444444444444444444444443322 33344444444444444444444444443
No 210
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=97.18 E-value=0.01 Score=61.76 Aligned_cols=169 Identities=15% Similarity=0.074 Sum_probs=111.8
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc
Q 038190 283 CSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKI 362 (531)
Q Consensus 283 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~ 362 (531)
..++..+.+.|.+++|.++.+.- ..-.......|+++.|.++.+.+ .+...|..+...+.+.
T Consensus 633 ~~~~~~l~~~~~~~~a~~~~~~~------------~~~f~~~l~~~~~~~A~~~~~~~------~~~~~W~~la~~al~~ 694 (814)
T 3mkq_A 633 TKIARFLEGQEYYEEALNISPDQ------------DQKFELALKVGQLTLARDLLTDE------SAEMKWRALGDASLQR 694 (814)
T ss_dssp HHHHHHHHHTTCHHHHHHHCCCH------------HHHHHHHHHHTCHHHHHHHHTTC------CCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCChHHheecCCCc------------chheehhhhcCCHHHHHHHHHhh------CcHhHHHHHHHHHHHc
Confidence 66677777788888877665321 11133456779999998886443 3678899999999999
Q ss_pred CCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHhhhCCCCCcHH
Q 038190 363 EKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVV 442 (531)
Q Consensus 363 ~~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~ 442 (531)
++++.|.+.|..+.. |..+...|...|+.+...++.+.....|
T Consensus 695 ~~~~~A~~~y~~~~d-------------------------------~~~l~~l~~~~~~~~~~~~~~~~a~~~~------ 737 (814)
T 3mkq_A 695 FNFKLAIEAFTNAHD-------------------------------LESLFLLHSSFNNKEGLVTLAKDAETTG------ 737 (814)
T ss_dssp TCHHHHHHHHHHHTC-------------------------------HHHHHHHHHHTTCHHHHHHHHHHHHHTT------
T ss_pred CCHHHHHHHHHHccC-------------------------------hhhhHHHHHHcCCHHHHHHHHHHHHHcC------
Confidence 999999999987642 3344555555777776666655555432
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHhccCChhHHHhh
Q 038190 443 TYTVMICGLCIEGGIEKAYDLLPDMEEKIRECLKAIELLHKMAKRYVKPDE----ITVSILEELLNKDENCHECMNL 515 (531)
Q Consensus 443 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~i~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~a~~~ 515 (531)
-++....+|.+.|++++|++++.++ +++++|..+-+. . .|.. .+...+...+...|+.+.|..+
T Consensus 738 ~~~~A~~~~~~~g~~~~a~~~~~~~----~~~~~A~~lA~~---~--~~~~~~i~~~~~~~~~~L~~~~~~~~a~~l 805 (814)
T 3mkq_A 738 KFNLAFNAYWIAGDIQGAKDLLIKS----QRFSEAAFLGST---Y--GLGDNEVNDIVTKWKENLILNGKNTVSERV 805 (814)
T ss_dssp CHHHHHHHHHHHTCHHHHHHHHHHT----TCHHHHHHHHHH---T--TCCHHHHHHHHHHHHHHHHTTTCHHHHTTB
T ss_pred chHHHHHHHHHcCCHHHHHHHHHHc----CChHHHHHHHHH---h--CCChHHHHHHHHHHHHHHHhccchhHHHhh
Confidence 2244445577788888888887664 566777776554 2 3444 5666677777788876555443
No 211
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.16 E-value=0.0015 Score=61.85 Aligned_cols=105 Identities=10% Similarity=0.021 Sum_probs=81.6
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcC---CCCCCCCcHHhHHHHHHHHHhcCChhHHHHHHHHHhhC-----C-CCC-CHhh
Q 038190 164 IRGLCMQGKFTEASGLFTKFVAFD---CRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGR-----G-IYP-DAFV 233 (531)
Q Consensus 164 i~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~-----g-~~p-~~~~ 233 (531)
+..+.+.|++++|+.++++..... ..++......+++.|..+|...|++++|+.++++.... | -.| ...+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 455667899999999999998642 22222223458899999999999999999999887542 2 122 2456
Q ss_pred HHHHHHHHHhcCChhhhhcchHHHHHHHHHHHhCC
Q 038190 234 YNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGN 268 (531)
Q Consensus 234 ~~~li~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~ 268 (531)
++.+...|...|++++|...+++|+++++.....+
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~ 408 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGRE 408 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTT
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC
Confidence 88899999999999999999999999998876554
No 212
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.13 E-value=0.00077 Score=63.64 Aligned_cols=94 Identities=4% Similarity=-0.107 Sum_probs=76.8
Q ss_pred hcCChhHHHHHHHHHhhC---CCCCC----HhhHHHHHHHHHhcCChhhhhcchHHHHHHHHHHHhCCCCCCccccCCHh
Q 038190 208 KDGFVNKVRVLFLDMKGR---GIYPD----AFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVL 280 (531)
Q Consensus 208 ~~~~~~~a~~~~~~m~~~---g~~p~----~~~~~~li~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 280 (531)
..|++++|..++++..+. -+.|+ ..+++.+..+|...|++++|+..+++++++++...... .+-...
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~------Hp~~a~ 383 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVY------SLNVAS 383 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSS------CHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCC------ChHHHH
Confidence 457899999999887542 12222 46788999999999999999999999999999887665 344466
Q ss_pred hHHHHHHHHhcCCCHHHHHHHHHHHHh
Q 038190 281 SYCSIINSLCKDVLVDKAKELFLDMKS 307 (531)
Q Consensus 281 ~~~~ll~~~~~~~~~~~a~~~~~~~~~ 307 (531)
+++.+...|...|++++|+.++++..+
T Consensus 384 ~l~nLa~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 384 MWLKLGRLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence 799999999999999999999988764
No 213
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.11 E-value=0.0013 Score=62.16 Aligned_cols=99 Identities=10% Similarity=-0.064 Sum_probs=80.9
Q ss_pred HHHHHhcCChhHHHHHHHHHhhC---CCCCC----HhhHHHHHHHHHhcCChhhhhcchHHHHHHHHHHHhCCCCCCccc
Q 038190 203 IDGLCKDGFVNKVRVLFLDMKGR---GIYPD----AFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVIC 275 (531)
Q Consensus 203 ~~~~~~~~~~~~a~~~~~~m~~~---g~~p~----~~~~~~li~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~ 275 (531)
+..+.+.|++++|..++++..+. -+.|+ ..+++.+..+|...|++++|+..+++++++++...... .
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~------H 367 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGS------H 367 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSS------C
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCC------C
Confidence 45566789999999999998753 12222 45788899999999999999999999999999887665 4
Q ss_pred cCCHhhHHHHHHHHhcCCCHHHHHHHHHHHHh
Q 038190 276 HPDVLSYCSIINSLCKDVLVDKAKELFLDMKS 307 (531)
Q Consensus 276 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 307 (531)
+....+++.+...|...|++++|..++++..+
T Consensus 368 p~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 368 PVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 44566799999999999999999999987764
No 214
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.05 E-value=0.027 Score=51.05 Aligned_cols=142 Identities=9% Similarity=-0.033 Sum_probs=89.7
Q ss_pred CCCHHHHHHHHHHHH--hcC---CHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcc
Q 038190 311 IPDVVVYSSLIDGYC--LMG---RIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNS 385 (531)
Q Consensus 311 ~~~~~~~~~ll~~~~--~~g---~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 385 (531)
+.+...|...+++.. ..+ +..+|..+|++..+..+. ....|..+..+|.... ..+. .+..
T Consensus 191 p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~-~a~A~A~la~a~~~~~-------------~~~~-~~~~ 255 (372)
T 3ly7_A 191 PHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPE-FTYARAEKALVDIVRH-------------SQHP-LDEK 255 (372)
T ss_dssp CSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHH-------------HHSC-CCHH
T ss_pred CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHh-------------ccCC-Cchh
Confidence 456677777776543 333 457899999999987433 3455555555554100 0000 0000
Q ss_pred cHHHHHHHHHHHHh-CCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHcCCHHHHHHHH
Q 038190 386 CILEAAELFRTLHN-TKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLL 464 (531)
Q Consensus 386 ~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 464 (531)
........+..... ...+.+..+|..+...+...|++++|...++++... .|+...|..+...+.-.|++++|++.|
T Consensus 256 ~~~~l~~a~~a~~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~L--n~s~~a~~llG~~~~~~G~~~eA~e~~ 333 (372)
T 3ly7_A 256 QLAALNTEIDNIVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDL--EMSWLNYVLLGKVYEMKGMNREAADAY 333 (372)
T ss_dssp HHHHHHHHHHHHHTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 00111111111111 112447889998888888889999999999999996 478888888888999999999998888
Q ss_pred HHHHH
Q 038190 465 PDMEE 469 (531)
Q Consensus 465 ~~~~~ 469 (531)
++...
T Consensus 334 ~~Alr 338 (372)
T 3ly7_A 334 LTAFN 338 (372)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 76554
No 215
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=96.79 E-value=0.036 Score=50.19 Aligned_cols=144 Identities=8% Similarity=-0.082 Sum_probs=96.5
Q ss_pred CCCChhhHHHHHHHHHc--c---CCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHc---cCCcc--h---HHHHHHHHH
Q 038190 83 PTPFMPSFNSLLGALAG--K---KYYVNFICLSERLNTIGLLPDFVSLNILMNCFCK---MIGVS--D---AFVALGRIL 149 (531)
Q Consensus 83 ~~~~~~~~~~li~~~~~--~---~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~---~g~~~--~---a~~~~~~~~ 149 (531)
+..+..+|...+++... . .++.+|+.+|++.++.. +-....|..+..+|.- .+.+. . ....+....
T Consensus 190 ~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lD-P~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~ 268 (372)
T 3ly7_A 190 LPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSS-PEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIV 268 (372)
T ss_dssp SCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHH
Confidence 44578899998877542 2 34688999999999874 3344556555544431 11111 1 111222211
Q ss_pred HC-CCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCCCcHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCC
Q 038190 150 RK-VFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIY 228 (531)
Q Consensus 150 ~~-~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~ 228 (531)
.. ..+.+..+|..+...+...|++++|...+++....+ | +...|..+...+.-.|++++|.+.|++.... .
T Consensus 269 a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~----s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL--~ 340 (372)
T 3ly7_A 269 TLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--M----SWLNYVLLGKVYEMKGMNREAADAYLTAFNL--R 340 (372)
T ss_dssp TCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--C----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--S
T ss_pred hcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--C----CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--C
Confidence 11 124467788887777777899999999999999873 3 6777888888899999999999999988875 4
Q ss_pred CCHhhHH
Q 038190 229 PDAFVYN 235 (531)
Q Consensus 229 p~~~~~~ 235 (531)
|...||.
T Consensus 341 P~~~t~~ 347 (372)
T 3ly7_A 341 PGANTLY 347 (372)
T ss_dssp CSHHHHH
T ss_pred CCcChHH
Confidence 6666654
No 216
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=96.72 E-value=0.099 Score=45.40 Aligned_cols=63 Identities=19% Similarity=0.184 Sum_probs=51.1
Q ss_pred CHHHHHHHHHHHHcC-----CChHHHHHHHHHhhhCCCCC--cHHHHHHHHHHHHHc-CCHHHHHHHHHHHHH
Q 038190 405 DLTVFNCLVDGLCKS-----WRLRSAWELFKKLPRYGPEP--NVVTYTVMICGLCIE-GGIEKAYDLLPDMEE 469 (531)
Q Consensus 405 ~~~~~~~l~~~~~~~-----g~~~~A~~~~~~~~~~g~~p--~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~ 469 (531)
+...|..|...|... |+.++|.+.|++.++. .| +..++..+...++.. |+.++|.+.+++...
T Consensus 198 ~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~L--nP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~ 268 (301)
T 3u64_A 198 EGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRY--CSAHDPDHHITYADALCIPLNNRAGFDEALDRALA 268 (301)
T ss_dssp HHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHH--CCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHh--CCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHc
Confidence 356899999999994 9999999999999995 55 377788888888884 989988777765543
No 217
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.51 E-value=0.0042 Score=44.69 Aligned_cols=57 Identities=11% Similarity=-0.027 Sum_probs=34.0
Q ss_pred HHHHccCCHHHHHHHHHHHHhCCCCCCHh-hHHHHHHHHHccCCcchHHHHHHHHHHCC
Q 038190 95 GALAGKKYYVNFICLSERLNTIGLLPDFV-SLNILMNCFCKMIGVSDAFVALGRILRKV 152 (531)
Q Consensus 95 ~~~~~~~~~~~a~~~~~~m~~~g~~~~~~-~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 152 (531)
..+.+.|++++|+..|+++.+.. +.+.. .+..+..++...|++++|...|+++++..
T Consensus 8 ~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 65 (99)
T 2kc7_A 8 KELINQGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELN 65 (99)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 34555666666666666665543 33444 56666666666666666666666666553
No 218
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=96.48 E-value=0.038 Score=42.83 Aligned_cols=83 Identities=14% Similarity=0.058 Sum_probs=63.5
Q ss_pred cHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCC---ChHHHHHHHHHhhhCCCCC--cHHHHHHHHHHHHHcCCHHHH
Q 038190 386 CILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSW---RLRSAWELFKKLPRYGPEP--NVVTYTVMICGLCIEGGIEKA 460 (531)
Q Consensus 386 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~g~~p--~~~~~~~l~~~~~~~g~~~~A 460 (531)
.+..+.+-|....+.+. ++..+.-.+.+++++.+ +++++..+++...+.. .| +...+-.+.-+|.+.|++++|
T Consensus 13 ~l~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A 90 (152)
T 1pc2_A 13 DLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKA 90 (152)
T ss_dssp HHHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHH
Confidence 34445555555555444 58889899999999988 6779999999998853 24 355666777889999999999
Q ss_pred HHHHHHHHHH
Q 038190 461 YDLLPDMEEK 470 (531)
Q Consensus 461 ~~~~~~~~~~ 470 (531)
.++++.+.+.
T Consensus 91 ~~y~~~lL~i 100 (152)
T 1pc2_A 91 LKYVRGLLQT 100 (152)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhc
Confidence 9999888776
No 219
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.39 E-value=0.014 Score=41.85 Aligned_cols=58 Identities=14% Similarity=0.079 Sum_probs=46.7
Q ss_pred HHHHHHcCCChHHHHHHHHHhhhCCCCCcHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 038190 412 LVDGLCKSWRLRSAWELFKKLPRYGPEPNVV-TYTVMICGLCIEGGIEKAYDLLPDMEEK 470 (531)
Q Consensus 412 l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 470 (531)
....+...|++++|...|+++.+.. +.+.. .|..+..+|...|++++|++.|++..+.
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 64 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 4567888999999999999998852 22566 8888999999999999998888765543
No 220
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=96.37 E-value=0.051 Score=38.43 Aligned_cols=47 Identities=13% Similarity=0.141 Sum_probs=22.5
Q ss_pred cchHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 038190 138 VSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVA 185 (531)
Q Consensus 138 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 185 (531)
.++|..++++.++..+. ++.+...+...+.+.|++++|+..|+++..
T Consensus 25 ~~~A~~~l~~AL~~dp~-~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~ 71 (93)
T 3bee_A 25 TDEVSLLLEQALQLEPY-NEAALSLIANDHFISFRFQEAIDTWVLLLD 71 (93)
T ss_dssp CHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHCcC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 34555555555544322 334444444455555555555555555544
No 221
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.33 E-value=0.039 Score=57.34 Aligned_cols=117 Identities=14% Similarity=-0.022 Sum_probs=77.2
Q ss_pred HHHccCCHHHHHH-HHHHHHhCCCCCCHhhHHHHHHHHHccCCcchHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChH
Q 038190 96 ALAGKKYYVNFIC-LSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFT 174 (531)
Q Consensus 96 ~~~~~~~~~~a~~-~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 174 (531)
.....+++++|.+ ++.. .++......++..+.+.|.++.|.++.+. . ..-.......|+++
T Consensus 608 ~~~~~~~~~~a~~~~l~~------i~~~~~~~~~~~~l~~~~~~~~a~~~~~~---------~---~~~f~~~l~~~~~~ 669 (814)
T 3mkq_A 608 TLTLRGEIEEAIENVLPN------VEGKDSLTKIARFLEGQEYYEEALNISPD---------Q---DQKFELALKVGQLT 669 (814)
T ss_dssp HHHHTTCHHHHHHHTGGG------CCCHHHHHHHHHHHHHTTCHHHHHHHCCC---------H---HHHHHHHHHHTCHH
T ss_pred HHHHhCCHHHHHHHHHhc------CCchHHHHHHHHHHHhCCChHHheecCCC---------c---chheehhhhcCCHH
Confidence 3345788888866 4421 11122337777788888888888765521 1 11234456789999
Q ss_pred HHHHHHHHHHHcCCCCCCCCcHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChhh
Q 038190 175 EASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWED 249 (531)
Q Consensus 175 ~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~ 249 (531)
+|.++.+.+ .+...|..+...+.+.++++.|.+.|..+.. |..+...+...++.+.
T Consensus 670 ~A~~~~~~~----------~~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~ 725 (814)
T 3mkq_A 670 LARDLLTDE----------SAEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEG 725 (814)
T ss_dssp HHHHHHTTC----------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHH
T ss_pred HHHHHHHhh----------CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHH
Confidence 998886544 2677899999999999999999999998764 3444445554554443
No 222
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=96.29 E-value=0.23 Score=43.20 Aligned_cols=115 Identities=10% Similarity=-0.018 Sum_probs=81.0
Q ss_pred hhHHHHHH-HHHhc-CChhhhhcchHHHHHHHHHHHhCCCCCCccccCC---HhhHHHHHHHHhc-----CCCHHHHHHH
Q 038190 232 FVYNSLIR-VYCCA-VNWEDAKGNTSAALELHEEFVNGNGELGVICHPD---VLSYCSIINSLCK-----DVLVDKAKEL 301 (531)
Q Consensus 232 ~~~~~li~-~~~~~-~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~---~~~~~~ll~~~~~-----~~~~~~a~~~ 301 (531)
..|..++. .+... ..--.++.....|...+++..+.+ |+ ...|..+...|.+ -|+.++|.+.
T Consensus 155 L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleLD--------P~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ 226 (301)
T 3u64_A 155 LYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDLW--------PSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTA 226 (301)
T ss_dssp HHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHHC--------TTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHhC--------CCcccCHHHHHHHHHHHhCCCccCCCHHHHHHH
Confidence 34544443 33333 222346666777888888888865 54 5678888888888 4999999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHhcCCC--CCHHHHHH
Q 038190 302 FLDMKSRGIIPDVVVYSSLIDGYCL-MGRIDDARKLFVSIESEGCI--PDTSSYNT 354 (531)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~ll~~~~~-~g~~~~a~~~~~~~~~~g~~--p~~~~~~~ 354 (531)
|++..+.+..-+..++......++. .|+.+.+.+.+++.+..... |+....+.
T Consensus 227 ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~~~P~~~lan~ 282 (301)
T 3u64_A 227 FEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPESVPHNKLLVI 282 (301)
T ss_dssp HHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGGGCSSCHHHHH
T ss_pred HHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCCChhHHHH
Confidence 9999987432246677777788887 49999999999999987665 55444443
No 223
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=96.17 E-value=0.051 Score=39.41 Aligned_cols=67 Identities=13% Similarity=-0.001 Sum_probs=54.7
Q ss_pred CCHHHHHHHHHHHHcCCChHHHHHHHHHhhhC------CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 038190 404 LDLTVFNCLVDGLCKSWRLRSAWELFKKLPRY------GPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK 470 (531)
Q Consensus 404 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 470 (531)
.+..-+-.+...+.+.|+++.|...|+...+. +-.+....+..+..++.+.|++++|+.++++..+.
T Consensus 3 Lsa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l 75 (104)
T 2v5f_A 3 LTAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (104)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 35666778999999999999999999988763 11245778899999999999999998888776654
No 224
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=96.16 E-value=0.3 Score=38.89 Aligned_cols=130 Identities=10% Similarity=0.102 Sum_probs=77.8
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCCCCCcHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHh
Q 038190 164 IRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCC 243 (531)
Q Consensus 164 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~ 243 (531)
.......|+++.|.++.+++. +...|..|.......|+++-|.+.|..... +..+.-.|..
T Consensus 12 F~LAL~lg~l~~A~e~a~~l~----------~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~ 72 (177)
T 3mkq_B 12 FDLALEYGNLDAALDEAKKLN----------DSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLV 72 (177)
T ss_dssp HHHHHHTTCHHHHHHHHHHHC----------CHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHH
T ss_pred HHHHHhcCCHHHHHHHHHHhC----------CHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHH
Confidence 445567788888888877651 577888888888888888888888887764 3444444555
Q ss_pred cCChhhhhcchHHHHHHHHHHHhCCCCCCccccCCHhhHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 038190 244 AVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDG 323 (531)
Q Consensus 244 ~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 323 (531)
.|+.+.-.. +-+.....+ -++.....+.-.|+++++.++|.+.. .-|. -...
T Consensus 73 tg~~e~L~k-------la~iA~~~g------------~~n~af~~~l~lGdv~~~i~lL~~~~---r~~e------A~~~ 124 (177)
T 3mkq_B 73 TGDVNKLSK-------MQNIAQTRE------------DFGSMLLNTFYNNSTKERSSIFAEGG---SLPL------AYAV 124 (177)
T ss_dssp HTCHHHHHH-------HHHHHHHTT------------CHHHHHHHHHHHTCHHHHHHHHHHTT---CHHH------HHHH
T ss_pred hCCHHHHHH-------HHHHHHHCc------------cHHHHHHHHHHcCCHHHHHHHHHHCC---ChHH------HHHH
Confidence 555544333 333322222 24555556667778887777774432 1111 1111
Q ss_pred HHhcCCHHHHHHHHHHH
Q 038190 324 YCLMGRIDDARKLFVSI 340 (531)
Q Consensus 324 ~~~~g~~~~a~~~~~~~ 340 (531)
....|..+.|.++.+.+
T Consensus 125 A~t~g~~~~a~~~~~~~ 141 (177)
T 3mkq_B 125 AKANGDEAAASAFLEQA 141 (177)
T ss_dssp HHHTTCHHHHHHHHHHT
T ss_pred HHHcCcHHHHHHHHHHh
Confidence 22356666666666554
No 225
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=96.02 E-value=0.09 Score=40.76 Aligned_cols=97 Identities=15% Similarity=0.102 Sum_probs=68.5
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhcCCCC--CHHHHHHHHHHHHhcCCHHHHH
Q 038190 295 VDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMG---RIDDARKLFVSIESEGCIP--DTSSYNTLINSYSKIEKVEEAL 369 (531)
Q Consensus 295 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g---~~~~a~~~~~~~~~~g~~p--~~~~~~~li~~~~~~~~~~~a~ 369 (531)
...+.+-|.+..+.|. ++..+.-.+..++++.. +++++..+|+.+.+.+ .| ....+-.+.-+|.+.|++++|.
T Consensus 14 l~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~ 91 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKAL 91 (152)
T ss_dssp HHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHH
Confidence 3455666766666654 57777777788888888 6679999999988874 23 3455666777889999999999
Q ss_pred HHHHHHHhCCCCCCcccHHHHHHHHH
Q 038190 370 SLYGEMISMGVRPDNSCILEAAELFR 395 (531)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~a~~~~~ 395 (531)
+.++.+.+ +.|+........+.++
T Consensus 92 ~y~~~lL~--ieP~n~QA~~Lk~~ie 115 (152)
T 1pc2_A 92 KYVRGLLQ--TEPQNNQAKELERLID 115 (152)
T ss_dssp HHHHHHHH--HCTTCHHHHHHHHHHH
T ss_pred HHHHHHHh--cCCCCHHHHHHHHHHH
Confidence 99999987 4565333333333333
No 226
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=95.72 E-value=0.065 Score=41.90 Aligned_cols=121 Identities=10% Similarity=-0.024 Sum_probs=77.3
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHhhhC-CCCCc-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH---HhhHHHH
Q 038190 409 FNCLVDGLCKSWRLRSAWELFKKLPRY-GPEPN-------VVTYTVMICGLCIEGGIEKAYDLLPDMEEK---IRECLKA 477 (531)
Q Consensus 409 ~~~l~~~~~~~g~~~~A~~~~~~~~~~-g~~p~-------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---i~~~~~a 477 (531)
+-.=+..+...|.++.|+-+.+-+... +..|+ ..++..+.+++...|++..|...|++..+. +.+...+
T Consensus 23 l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~ 102 (167)
T 3ffl_A 23 VIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKV 102 (167)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC------
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 444567788899999998888776541 11233 235667888999999999999999876554 1111110
Q ss_pred HHHHH--HHH--HcCCCCCHHHHHHHHHHHhccCChhHHHhhHHHhhhcchhhhhc
Q 038190 478 IELLH--KMA--KRYVKPDEITVSILEELLNKDENCHECMNLLPSFLSRNQEESKL 529 (531)
Q Consensus 478 ~~~~~--~~~--~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 529 (531)
..... ... .....++.+.---+..+|.+.|++++|+.+++.+|.+...++..
T Consensus 103 ~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k~Rt~kvn 158 (167)
T 3ffl_A 103 RPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPSRQRTPKIN 158 (167)
T ss_dssp --------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCGGGCCHHHH
T ss_pred cccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCchhcCHHHH
Confidence 00000 000 00122334555568999999999999999999999887776543
No 227
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=95.64 E-value=0.12 Score=36.51 Aligned_cols=68 Identities=13% Similarity=0.049 Sum_probs=57.1
Q ss_pred CCChhhHHHHHHHHHhcCC---hHHHHHHHHHHHHcCCCCCCCCcHHhHHHHHHHHHhcCChhHHHHHHHHHhhCC
Q 038190 154 SPDVVTLGCLIRGLCMQGK---FTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRG 226 (531)
Q Consensus 154 ~~~~~~~~~li~~~~~~g~---~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g 226 (531)
+.+...+..+..++...++ .++|..+|++.... +|+ ++.+...+...+...|++++|+..|+.+.+..
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~--dp~---~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~ 73 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQL--EPY---NEAALSLIANDHFISFRFQEAIDTWVLLLDSN 73 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHH--CTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH--CcC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 3467778888888765554 79999999999987 553 78899999999999999999999999999863
No 228
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=95.58 E-value=0.1 Score=37.72 Aligned_cols=62 Identities=18% Similarity=0.101 Sum_probs=29.1
Q ss_pred HHHHHHHHHccCCcchHHHHHHHHHHCC------CCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 038190 125 LNILMNCFCKMIGVSDAFVALGRILRKV------FSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAF 186 (531)
Q Consensus 125 ~~~li~~~~~~g~~~~a~~~~~~~~~~~------~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 186 (531)
+..+...+.+.|++..|..+|+.+++.- -.....++..+..++.+.|+++.|+..+++....
T Consensus 8 c~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l 75 (104)
T 2v5f_A 8 CFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (104)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 3344444444445555554444444321 0123344555555555555555555555555543
No 229
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=95.35 E-value=0.0017 Score=60.22 Aligned_cols=244 Identities=13% Similarity=0.081 Sum_probs=145.8
Q ss_pred hhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCcchHHHHHHHHHHCCCCCChhhHHHHHHH
Q 038190 87 MPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRG 166 (531)
Q Consensus 87 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 166 (531)
...|..|..+....+...+|++-|-+ .-|+..|..+|.++.+.|.+++-...+....+.. .+..+=+.|+-+
T Consensus 54 p~VWs~LgkAqL~~~~v~eAIdsyIk------A~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~--ke~~IDteLi~a 125 (624)
T 3lvg_A 54 PAVWSQLAKAQLQKGMVKEAIDSYIK------ADDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFA 125 (624)
T ss_dssp CCCSSSHHHHTTTSSSCTTTTTSSCC------CSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTC--CSTTTTHHHHHH
T ss_pred ccHHHHHHHHHHccCchHHHHHHHHh------CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh--cccccHHHHHHH
Confidence 34677788887777777777665532 1255667778888888888888877776665542 344555677788
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCCCCCcHHhHHHHHHHHHhcCChhHHHHHHHHHhhCC--------------------
Q 038190 167 LCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRG-------------------- 226 (531)
Q Consensus 167 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g-------------------- 226 (531)
|++.++..+..+++ . . |+..-...+..-|...|.++.|.-+|..+....
T Consensus 126 yAk~~rL~elEefl----~---~----~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaAr 194 (624)
T 3lvg_A 126 LAKTNRLAELEEFI----N---G----PNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGAR 194 (624)
T ss_dssp HHTSCSSSTTTSTT----S---C----CSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTT
T ss_pred HHhhCcHHHHHHHH----c---C----CCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHH
Confidence 88887765543322 1 1 355555666666777777776666655442210
Q ss_pred CCCCHhhHHHHHHHHHhcCChhhhhcchHHHHHHHHHHHhCCCCCCccccCCHhhHHHHHHHHhcCCCHHHHHHHHHHHH
Q 038190 227 IYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMK 306 (531)
Q Consensus 227 ~~p~~~~~~~li~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 306 (531)
-.-++.||..+-.+|...+.+.-|.- .--.+. +.+| -...++..|...|.+++.+.+++...
T Consensus 195 KAns~ktWKeV~~ACvd~~EfrLAqi-------cGLniI---------vhad--eL~elv~~YE~~G~f~ELIsLlEagl 256 (624)
T 3lvg_A 195 KANSTRTWKEVCFACVDGKEFRLAQM-------CGLHIV---------VHAD--ELEELINYYQDRGYFEELITMLEAAL 256 (624)
T ss_dssp TCCSSCSHHHHTHHHHHSCTTTTTTH-------HHHHHH---------CCSS--CCSGGGSSSSTTCCCTTSTTTHHHHT
T ss_pred hcCChhHHHHHHHHHhCchHHHHHHH-------hcchhc---------ccHH--HHHHHHHHHHhCCCHHHHHHHHHHHh
Confidence 11266788888888888877766643 111111 1111 23345666788888888888888766
Q ss_pred hCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-CCC------CCHHHHHHHHHHHHhcCCHHHHH
Q 038190 307 SRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESE-GCI------PDTSSYNTLINSYSKIEKVEEAL 369 (531)
Q Consensus 307 ~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-g~~------p~~~~~~~li~~~~~~~~~~~a~ 369 (531)
.. -....-+|+-|.-.|++- ++++..+.++....+ ++. -....|.-++-.|.+-.+++.|.
T Consensus 257 gl-ErAHmGmFTELaILYsKY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~ 324 (624)
T 3lvg_A 257 GL-ERAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAI 324 (624)
T ss_dssp TS-TTCCHHHHHHHHHHHHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHH
T ss_pred CC-CchhHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHH
Confidence 43 234677788888778775 344444443332221 111 02344556666666666666553
No 230
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=95.16 E-value=0.7 Score=34.57 Aligned_cols=146 Identities=12% Similarity=0.036 Sum_probs=99.6
Q ss_pred hHHHHHHH--HHhcCChHHHHHHHHHHHHcCCCCCCCCcHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHh---h
Q 038190 159 TLGCLIRG--LCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAF---V 233 (531)
Q Consensus 159 ~~~~li~~--~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~---~ 233 (531)
+...|+.+ +.-.|..++..++..+.... .+..-||.+|--....-+-+-..++++.+-+. .|.. .
T Consensus 7 l~kkLmeAK~~ildG~v~qGveii~k~~~s-------sni~E~NW~ICNiiD~a~C~y~v~vLd~IGki---FDis~C~N 76 (172)
T 1wy6_A 7 IIRKLMDAKKFLLDGYIDEGVKIVLEITKS-------STKSEYNWFICNLLESIDCRYMFQVLDKIGSY---FDLDKCQN 76 (172)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG---SCGGGCSC
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHcCC-------CCccccceeeeecchhhchhHHHHHHHHHhhh---cCcHhhhc
Confidence 33444443 44568888888888888764 15666777777777777777777777766542 2221 1
Q ss_pred HHHHHHHHHhcCChhhhhcchHHHHHHHHHHHhCCCCCCccccCCHhhHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCC
Q 038190 234 YNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPD 313 (531)
Q Consensus 234 ~~~li~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 313 (531)
...++.+|.+.+ .+...+...+..+...|+-++-.+++..+.. +.+|+
T Consensus 77 lKrVi~C~~~~n-------------------------------~~se~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~ 124 (172)
T 1wy6_A 77 LKSVVECGVINN-------------------------------TLNEHVNKALDILVIQGKRDKLEEIGREILK-NNEVS 124 (172)
T ss_dssp THHHHHHHHHTT-------------------------------CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSC
T ss_pred HHHHHHHHHHhc-------------------------------chHHHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCC
Confidence 233444444332 2344556677788888888988888888654 34678
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 038190 314 VVVYSSLIDGYCLMGRIDDARKLFVSIESEGCI 346 (531)
Q Consensus 314 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~ 346 (531)
+...-.+..+|.+.|+..+|.+++.+.-+.|++
T Consensus 125 ~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 125 ASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred hHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 888888889999999999999999988888764
No 231
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=95.03 E-value=1 Score=35.82 Aligned_cols=46 Identities=15% Similarity=0.135 Sum_probs=27.0
Q ss_pred hcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 038190 290 CKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIE 341 (531)
Q Consensus 290 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 341 (531)
...|+++.|.++.+.+ .+...|..|.......|+++-|++.|.+..
T Consensus 16 L~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~ 61 (177)
T 3mkq_B 16 LEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQH 61 (177)
T ss_dssp HHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTT
T ss_pred HhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhC
Confidence 3456666666665544 145566666666666666666666665544
No 232
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=94.15 E-value=0.56 Score=34.87 Aligned_cols=66 Identities=12% Similarity=-0.011 Sum_probs=51.1
Q ss_pred CCHHHHHHHHHHHHcCCChHH---HHHHHHHhhhCCCCC--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 038190 404 LDLTVFNCLVDGLCKSWRLRS---AWELFKKLPRYGPEP--NVVTYTVMICGLCIEGGIEKAYDLLPDMEEK 470 (531)
Q Consensus 404 ~~~~~~~~l~~~~~~~g~~~~---A~~~~~~~~~~g~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 470 (531)
++..+--.+.+++.+..+... ++.+++.+.+.+ .| .....-.+.-++.+.|++++|.+.++.+.+.
T Consensus 33 ~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~ 103 (126)
T 1nzn_A 33 VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQT 103 (126)
T ss_dssp CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 577788888999999887666 889999888753 23 3344456777899999999999888887765
No 233
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=93.07 E-value=5.4 Score=36.82 Aligned_cols=85 Identities=11% Similarity=0.073 Sum_probs=66.1
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHc
Q 038190 408 VFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECLKAIELLHKMAKR 487 (531)
Q Consensus 408 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~i~~~~~a~~~~~~~~~~ 487 (531)
+...++.++...|++++|...+..+.... +-+...|..+|.++.+.|+..+|++.|+...+. +. .+.
T Consensus 173 a~~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~----------L~--~eL 239 (388)
T 2ff4_A 173 AHTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTT----------LA--DDL 239 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH----------HH--HHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH----------HH--HHh
Confidence 56677888999999999999999988742 347789999999999999999999999776543 11 145
Q ss_pred CCCCCHHHHHHHHHHHhc
Q 038190 488 YVKPDEITVSILEELLNK 505 (531)
Q Consensus 488 ~~~~~~~~~~~l~~~~~~ 505 (531)
|+.|+..+-...-..+..
T Consensus 240 G~~P~~~l~~l~~~il~~ 257 (388)
T 2ff4_A 240 GIDPGPTLRALNERILRQ 257 (388)
T ss_dssp SCCCCHHHHHHHHHHHTT
T ss_pred CCCCCHHHHHHHHHHHcC
Confidence 888888876655555543
No 234
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=92.84 E-value=0.84 Score=33.94 Aligned_cols=83 Identities=13% Similarity=0.026 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCcch---HHHHHHHHHHCC-CCCChhhHHHHHHHHHhcCChHHHHH
Q 038190 103 YVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSD---AFVALGRILRKV-FSPDVVTLGCLIRGLCMQGKFTEASG 178 (531)
Q Consensus 103 ~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~---a~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~a~~ 178 (531)
+..+.+-|.+....| .++..+-..+..++.+..+... ++.+++.+.+.+ +.......-.|.-++.+.|++++|.+
T Consensus 17 l~~~~~~y~~e~~~~-~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~ 95 (126)
T 1nzn_A 17 LLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALK 95 (126)
T ss_dssp HHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHH
Confidence 334444444444434 2455555555555555554443 555555555543 11122222234455666666666666
Q ss_pred HHHHHHHc
Q 038190 179 LFTKFVAF 186 (531)
Q Consensus 179 ~~~~~~~~ 186 (531)
.++.+.+.
T Consensus 96 ~~~~lL~~ 103 (126)
T 1nzn_A 96 YVRGLLQT 103 (126)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 66666654
No 235
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=92.72 E-value=10 Score=39.16 Aligned_cols=257 Identities=10% Similarity=-0.037 Sum_probs=128.6
Q ss_pred HHccCCHHHHHHHHHHHHhCCCCCCHhhH--HHHHHHHHccCCcchHHHHHHHHHHCCC-------CCChhhHHHHHHHH
Q 038190 97 LAGKKYYVNFICLSERLNTIGLLPDFVSL--NILMNCFCKMIGVSDAFVALGRILRKVF-------SPDVVTLGCLIRGL 167 (531)
Q Consensus 97 ~~~~~~~~~a~~~~~~m~~~g~~~~~~~~--~~li~~~~~~g~~~~a~~~~~~~~~~~~-------~~~~~~~~~li~~~ 167 (531)
....|+.++++.++......+-..+..+- ..+.-+....|..+++..++...+...- .+....-.++.-++
T Consensus 384 lIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGl 463 (963)
T 4ady_A 384 VIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGL 463 (963)
T ss_dssp HHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHH
T ss_pred hhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHHH
Confidence 44567777777776655432111233322 2223334455555567776666554311 01111222233333
Q ss_pred HhcCC-hHHHHHHHHHHHHcCCCCCCCCcH--HhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHhhHHHHHH--HHH
Q 038190 168 CMQGK-FTEASGLFTKFVAFDCRPNVIPNV--ICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIR--VYC 242 (531)
Q Consensus 168 ~~~g~-~~~a~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~--~~~ 242 (531)
+-.|. -+++.+.+..+.... . +.. .+--.|...++..|+.+....++..+.+.. +..+...+.- ++.
T Consensus 464 a~~GS~~eev~e~L~~~L~dd--~---~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~---~e~vrR~aalgLGll 535 (963)
T 4ady_A 464 AAMGSANIEVYEALKEVLYND--S---ATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ---HGNITRGLAVGLALI 535 (963)
T ss_dssp HSTTCCCHHHHHHHHHHHHTC--C---HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS---CHHHHHHHHHHHHHH
T ss_pred HhcCCCCHHHHHHHHHHHhcC--C---HHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC---cHHHHHHHHHHHHhh
Confidence 33342 245666666666531 0 011 122233444556778777777777766531 2233333333 344
Q ss_pred hcCChhhhhcchHHHHHHHHHHHhCCCCCCccccCCHhhH--HHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 038190 243 CAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSY--CSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSL 320 (531)
Q Consensus 243 ~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~--~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 320 (531)
..|+.+.+.. +.+.+.... .|....- .++.-+|+..|+.....+++..+.... ..++.....+
T Consensus 536 ~~g~~e~~~~-------li~~L~~~~-------dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~-~d~VRraAVi 600 (963)
T 4ady_A 536 NYGRQELADD-------LITKMLASD-------ESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDS-NDDVRRAAVI 600 (963)
T ss_dssp TTTCGGGGHH-------HHHHHHHCS-------CHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCS-CHHHHHHHHH
T ss_pred hCCChHHHHH-------HHHHHHhCC-------CHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCC-cHHHHHHHHH
Confidence 5677766666 666665532 2222222 234456778888877777888887652 2233333333
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCH-HHHHHHHHHHHh
Q 038190 321 IDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKV-EEALSLYGEMIS 377 (531)
Q Consensus 321 l~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~~~~-~~a~~~~~~~~~ 377 (531)
.-++...|+.+.+.++++.+.+.+ .|.+..-..+.-+....|.. .+++.++..+..
T Consensus 601 aLGlI~~g~~e~v~rlv~~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~L~~L~~ 657 (963)
T 4ady_A 601 ALGFVLLRDYTTVPRIVQLLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK 657 (963)
T ss_dssp HHHHHTSSSCSSHHHHTTTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT
T ss_pred HHHhhccCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc
Confidence 334445677677777777666543 23333333333344444443 567777777764
No 236
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=92.64 E-value=0.017 Score=53.76 Aligned_cols=193 Identities=9% Similarity=0.013 Sum_probs=125.0
Q ss_pred CCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCcchHHHHH
Q 038190 66 VELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVAL 145 (531)
Q Consensus 66 g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~ 145 (531)
|++.+|++.|-+. -|...|..+|.+..+.|.+++.+..+.-..+. .-++.+=+.|+-+|++.+++.+-.+.+
T Consensus 68 ~~v~eAIdsyIkA------~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~--~ke~~IDteLi~ayAk~~rL~elEefl 139 (624)
T 3lvg_A 68 GMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKK--ARESYVETELIFALAKTNRLAELEEFI 139 (624)
T ss_dssp SSCTTTTTSSCCC------SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTT--CCSTTTTHHHHHHHHTSCSSSTTTSTT
T ss_pred CchHHHHHHHHhC------CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--hcccccHHHHHHHHHhhCcHHHHHHHH
Confidence 4677777666333 35668999999999999999999988766554 345566678999999999887754433
Q ss_pred HHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCC----------------CCCCCcHHhHHHHHHHHHhc
Q 038190 146 GRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCR----------------PNVIPNVICYASIIDGLCKD 209 (531)
Q Consensus 146 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~----------------~~~~~~~~~~~~l~~~~~~~ 209 (531)
. .||..-...+.+-|...|.++.|.-+|..+.....- ..-..++.||..+-.+|...
T Consensus 140 ~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~ktWKeV~~ACvd~ 212 (624)
T 3lvg_A 140 N-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDG 212 (624)
T ss_dssp S-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCSHHHHTHHHHHS
T ss_pred c-------CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHhCc
Confidence 1 356666677788888888888887777654322100 00014677999999999999
Q ss_pred CChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChhhhhcchHHHHHHHHHHHhCCCCCCccccCCHhhHHHHHHHH
Q 038190 210 GFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSL 289 (531)
Q Consensus 210 ~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~ 289 (531)
+.+.-|.-.--.+.-. +| -...++..|-..|.+++-+. +++.-.... ......|+.|.-.|
T Consensus 213 ~EfrLAqicGLniIvh---ad--eL~elv~~YE~~G~f~ELIs-------LlEaglglE-------rAHmGmFTELaILY 273 (624)
T 3lvg_A 213 KEFRLAQMCGLHIVVH---AD--ELEELINYYQDRGYFEELIT-------MLEAALGLE-------RAHMGMFTELAILY 273 (624)
T ss_dssp CTTTTTTHHHHHHHCC---SS--CCSGGGSSSSTTCCCTTSTT-------THHHHTTST-------TCCHHHHHHHHHHH
T ss_pred hHHHHHHHhcchhccc---HH--HHHHHHHHHHhCCCHHHHHH-------HHHHHhCCC-------chhHHHHHHHHHHH
Confidence 9888876654444322 11 12234555667777777766 555444322 23455566555555
Q ss_pred hcC
Q 038190 290 CKD 292 (531)
Q Consensus 290 ~~~ 292 (531)
++-
T Consensus 274 sKY 276 (624)
T 3lvg_A 274 SKF 276 (624)
T ss_dssp HSS
T ss_pred Hhc
Confidence 543
No 237
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=92.52 E-value=2 Score=32.99 Aligned_cols=55 Identities=20% Similarity=0.109 Sum_probs=38.5
Q ss_pred cCChHHHHHHHHHHHHcCCCCCCCCcHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCC
Q 038190 170 QGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYP 229 (531)
Q Consensus 170 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p 229 (531)
.+|.++|.++|+.++.. ... =...|......-.+.|++..|.+++......+..|
T Consensus 73 i~D~d~aR~vy~~a~~~--hKk---FAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~ 127 (161)
T 4h7y_A 73 IQEPDDARDYFQMARAN--CKK---FAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVP 127 (161)
T ss_dssp HHCGGGCHHHHHHHHHH--CTT---BHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBC
T ss_pred hcCHHHHHHHHHHHHHH--hHH---HHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCc
Confidence 36778888888887764 111 25566666677777888888888888887766553
No 238
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=92.24 E-value=2 Score=32.91 Aligned_cols=54 Identities=17% Similarity=0.191 Sum_probs=31.7
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 038190 293 VLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIP 347 (531)
Q Consensus 293 ~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p 347 (531)
++.++|.++|+.+.+.+-.. ...|....+.-.+.|++..|.+++...+..+.+|
T Consensus 74 ~D~d~aR~vy~~a~~~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~ 127 (161)
T 4h7y_A 74 QEPDDARDYFQMARANCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVP 127 (161)
T ss_dssp HCGGGCHHHHHHHHHHCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBC
T ss_pred cCHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCc
Confidence 45556666666554432222 5555555555566777777777777777666553
No 239
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=91.92 E-value=1 Score=45.37 Aligned_cols=49 Identities=10% Similarity=-0.047 Sum_probs=40.5
Q ss_pred hhHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChhHHHhhHHHhhh
Q 038190 472 RECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLLPSFLS 521 (531)
Q Consensus 472 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 521 (531)
++++.|+.+-++....- +.+..+|..|..+|...|+++.|+-.+..+|.
T Consensus 351 ~~~elAL~~Ak~AV~~a-PseF~tW~~La~vYi~l~d~e~ALLtLNScPm 399 (754)
T 4gns_B 351 GDYELALGVSNTSTELA-LDSFESWYNLARCHIKKEEYEKALFAINSMPR 399 (754)
T ss_dssp TCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHSCC
T ss_pred CcHHHHHHHHHHHHhcC-chhhHHHHHHHHHHHHhccHHHHHHHHhcCCC
Confidence 56666777777776543 44679999999999999999999999999985
No 240
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=91.31 E-value=1 Score=45.28 Aligned_cols=126 Identities=14% Similarity=0.031 Sum_probs=80.0
Q ss_pred HHHHHHHHccCC-HHHHHHHHHHHHhCCCCCCHhhH--HHHHHHHHccCC-cchHHHHHHHHHH-------CCCCCCh--
Q 038190 91 NSLLGALAGKKY-YVNFICLSERLNTIGLLPDFVSL--NILMNCFCKMIG-VSDAFVALGRILR-------KVFSPDV-- 157 (531)
Q Consensus 91 ~~li~~~~~~~~-~~~a~~~~~~m~~~g~~~~~~~~--~~li~~~~~~g~-~~~a~~~~~~~~~-------~~~~~~~-- 157 (531)
..++..+...++ ++.|+.+++++.... |...++ ..++..+...++ --+|.+++.+.++ .-...+.
T Consensus 252 ~~Ll~~~~~t~~~~~~a~~~le~L~~~~--p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~ 329 (754)
T 4gns_B 252 YSLKSFIAITPSLVDFTIDYLKGLTKKD--PIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADS 329 (754)
T ss_dssp HHHHHHHHTCGGGHHHHHHHHHHHHHHC--GGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHH
T ss_pred HHHHHHHcccccHHHHHHHHHHHHHhhC--CchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhccccccc
Confidence 344555555666 588999999998764 433332 233333333332 2234444444432 1111111
Q ss_pred --------hhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCCCcHHhHHHHHHHHHhcCChhHHHHHHHHHh
Q 038190 158 --------VTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMK 223 (531)
Q Consensus 158 --------~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 223 (531)
...+.-.+.|...|+++.|+.+-++.... .|. +-.+|..|..+|...|+++.|+-.++.+.
T Consensus 330 ~~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~--aPs---eF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 330 ARLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTEL--ALD---SFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSS---CHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred ccccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhc--Cch---hhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 12222244566789999999999999876 553 67899999999999999999999998875
No 241
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=90.70 E-value=2.8 Score=31.34 Aligned_cols=71 Identities=8% Similarity=0.033 Sum_probs=38.1
Q ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChhHHHhhHH
Q 038190 438 EPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLLP 517 (531)
Q Consensus 438 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~i~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 517 (531)
.|+..+--.+.+++.+..+.++- .+++.+++...+.+..-....+-.+.-++.+.|++++|.+.++
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~--------------~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d 102 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDE--------------RLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVD 102 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHH--------------HHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred CCChhhHHHHHHHHHcCCCHHHH--------------HHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 45555555566666666554422 3444455555443321123445556666666666666666666
Q ss_pred Hhhhc
Q 038190 518 SFLSR 522 (531)
Q Consensus 518 ~~~~~ 522 (531)
.+-..
T Consensus 103 ~lL~~ 107 (134)
T 3o48_A 103 TLFEH 107 (134)
T ss_dssp HHHTT
T ss_pred HHHhh
Confidence 65444
No 242
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=90.66 E-value=1.3 Score=31.08 Aligned_cols=47 Identities=13% Similarity=0.085 Sum_probs=24.5
Q ss_pred HHHHHHHHhhhCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 038190 424 SAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK 470 (531)
Q Consensus 424 ~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 470 (531)
+..+-++.+....+.|++....+.+.+|.+.+++.-|+++|+-+..+
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K 74 (109)
T 1v54_E 28 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK 74 (109)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 44444444444445555555555555555555555555555555544
No 243
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=90.59 E-value=4.3 Score=30.48 Aligned_cols=64 Identities=16% Similarity=0.012 Sum_probs=48.9
Q ss_pred CHHHHHHHHHHHHcCCChHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 038190 405 DLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEE 469 (531)
Q Consensus 405 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 469 (531)
+...+...++.+...|+-+.-.+++..+... .+|++...-.+..+|.+.|+..+|.+++.+.-+
T Consensus 90 ~se~vd~ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~ 153 (172)
T 1wy6_A 90 LNEHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACK 153 (172)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHHHHHHHH
Confidence 4456777788888889988888888886442 467888888888999999988888777765544
No 244
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=90.50 E-value=12 Score=35.34 Aligned_cols=197 Identities=13% Similarity=0.089 Sum_probs=112.4
Q ss_pred CCCHHHHHHHHHHHHhC-----CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH----hc
Q 038190 292 DVLVDKAKELFLDMKSR-----GIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYS----KI 362 (531)
Q Consensus 292 ~~~~~~a~~~~~~~~~~-----~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~----~~ 362 (531)
.|+++.|.+.+-.+.+. ....+......++..|...|+++...+.+..+....-. -......+++.+. ..
T Consensus 29 ~~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~q-lk~ai~~~V~~~~~~l~~~ 107 (445)
T 4b4t_P 29 QNDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQ-LKLSIQYMIQKVMEYLKSS 107 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTT-SHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHhcC
Confidence 36788888877666542 34556777888999999999999888877766543222 1222334443332 12
Q ss_pred CCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHhCCCCC---CHHHHHHHHHHHHcCCChHHHHHHHHHhhh--CCC
Q 038190 363 EKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFEL---DLTVFNCLVDGLCKSWRLRSAWELFKKLPR--YGP 437 (531)
Q Consensus 363 ~~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~g~ 437 (531)
...+.... ..+.+. +....+..+-. .......|...|...|++.+|.+++..+.. .|.
T Consensus 108 ~~~d~~~~--~~~i~~---------------l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~ 170 (445)
T 4b4t_P 108 KSLDLNTR--ISVIET---------------IRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGS 170 (445)
T ss_dssp CTTHHHHH--HHHHHC---------------CSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSS
T ss_pred CchhHHHH--HHHHHH---------------HHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhc
Confidence 22221111 011110 00000111111 123446788999999999999999999864 332
Q ss_pred CCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHhccCChhHH
Q 038190 438 EPN---VVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECLKAIELLHKMAKRYVKPDE--ITVSILEELLNKDENCHEC 512 (531)
Q Consensus 438 ~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~i~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~a 512 (531)
... ...+...+..|...+++.+|..+++++... .......|+. ..+...+..+...++|.+|
T Consensus 171 ~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~-------------~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a 237 (445)
T 4b4t_P 171 MEMSEKIQFILEQMELSILKGDYSQATVLSRKILKK-------------TFKNPKYESLKLEYYNLLVKISLHKREYLEV 237 (445)
T ss_dssp SCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-------------HHHSSCCHHHHHHHHHHHHHHHHHHCCHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-------------hcccCCcHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 222 446667788899999999998888776433 1111222221 3455566666666666666
Q ss_pred HhhHHHh
Q 038190 513 MNLLPSF 519 (531)
Q Consensus 513 ~~~~~~~ 519 (531)
...+...
T Consensus 238 ~~~y~e~ 244 (445)
T 4b4t_P 238 AQYLQEI 244 (445)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6555443
No 245
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=89.86 E-value=1.3 Score=40.95 Aligned_cols=110 Identities=12% Similarity=0.019 Sum_probs=77.3
Q ss_pred CHhhHHHHHHHHH---ccCCcchHHHHHHHHHHC--CCC-CCh------------------hhHHHHHHHHHhcCChHHH
Q 038190 121 DFVSLNILMNCFC---KMIGVSDAFVALGRILRK--VFS-PDV------------------VTLGCLIRGLCMQGKFTEA 176 (531)
Q Consensus 121 ~~~~~~~li~~~~---~~g~~~~a~~~~~~~~~~--~~~-~~~------------------~~~~~li~~~~~~g~~~~a 176 (531)
|...|..++.... ..|+.+.|...++.++.. |.. ++. .+...++..+...|++.+|
T Consensus 111 D~~~f~~l~~~~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~~~a 190 (388)
T 2ff4_A 111 DLGRFVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAV 190 (388)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred hHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH
Confidence 3334555544322 347788888888877764 211 111 1223356667789999999
Q ss_pred HHHHHHHHHcCCCCCCCCcHHhHHHHHHHHHhcCChhHHHHHHHHHhh-----CCCCCCHhhHH
Q 038190 177 SGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKG-----RGIYPDAFVYN 235 (531)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~-----~g~~p~~~~~~ 235 (531)
+..+..+... .| -+...|..+|.++.+.|+..+|++.|+.+.. .|+.|+..+-.
T Consensus 191 ~~~l~~~~~~--~P---~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~ 249 (388)
T 2ff4_A 191 IAELEALTFE--HP---YREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRA 249 (388)
T ss_dssp HHHHHHHHHH--ST---TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHH
T ss_pred HHHHHHHHHh--CC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 9999998876 45 2788999999999999999999999988754 48999877543
No 246
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=89.52 E-value=5.6 Score=30.18 Aligned_cols=73 Identities=8% Similarity=0.043 Sum_probs=44.4
Q ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChhHHHhhHH
Q 038190 438 EPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLLP 517 (531)
Q Consensus 438 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~i~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 517 (531)
.|+..+--.+.+++.++.+.++. .+++.+++...+.+..-....+-.|.-++.+.|++++|.+.++
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di--------------~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d 101 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDE--------------RLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVD 101 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHH--------------HHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHH--------------HHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 45666666677777777665532 4455555555544432234455567777777777777777777
Q ss_pred Hhhhcch
Q 038190 518 SFLSRNQ 524 (531)
Q Consensus 518 ~~~~~~~ 524 (531)
.+-...+
T Consensus 102 ~lL~~eP 108 (144)
T 1y8m_A 102 TLFEHER 108 (144)
T ss_dssp HHHHTCC
T ss_pred HHHhcCC
Confidence 6655433
No 247
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=88.62 E-value=12 Score=32.98 Aligned_cols=168 Identities=12% Similarity=0.010 Sum_probs=94.3
Q ss_pred hHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH----HHHHHhcCCCCCHHHHHHHH
Q 038190 281 SYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKL----FVSIESEGCIPDTSSYNTLI 356 (531)
Q Consensus 281 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~----~~~~~~~g~~p~~~~~~~li 356 (531)
.|.++..-|.+.+++++|.+++..-. ..+.+.|+...|.++ .+-..+.+.+++......++
T Consensus 35 ~~Rtl~~Ry~~~~~~~eAidlL~~ga---------------~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~ 99 (312)
T 2wpv_A 35 TLRTIANRYVRSKSYEHAIELISQGA---------------LSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLV 99 (312)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHH---------------HHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHH---------------HHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 35556666777778888887765432 224455665555443 44445567777766666666
Q ss_pred HHHHhcCCHH-HHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHcCCChHHHHHHHHHhh
Q 038190 357 NSYSKIEKVE-EALSLYGEMISMGVRPDNSCILEAAELFRTLHNTK--FELDLTVFNCLVDGLCKSWRLRSAWELFKKLP 433 (531)
Q Consensus 357 ~~~~~~~~~~-~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 433 (531)
..+.....-+ .=..+++++. ++..+.| ..-++.....+...|.+.|++.+|...|-.-.
T Consensus 100 ~l~~~~p~~~~~r~~fi~~ai------------------~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~ 161 (312)
T 2wpv_A 100 RLIAELDPSEPNLKDVITGMN------------------NWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGT 161 (312)
T ss_dssp HHHTTCCTTCTTHHHHHHHHH------------------HHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSC
T ss_pred HHHHHCCCCCchHHHHHHHHH------------------HHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCC
Confidence 6554432111 0112222222 1222111 12378888999999999999999988775221
Q ss_pred hCCCCCcHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHH---HhhHHHHHHHHHHHH
Q 038190 434 RYGPEPNVVTYTVMICGLCIE---GGIEKAYDLLPDMEEK---IRECLKAIELLHKMA 485 (531)
Q Consensus 434 ~~g~~p~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~~---i~~~~~a~~~~~~~~ 485 (531)
.-+...+..++.-+... |...++--++-+..-. +++...|..+++...
T Consensus 162 ----~~s~~~~a~~l~~w~~~~~~~~~~e~dlf~~RaVL~yL~l~n~~~A~~~~~~f~ 215 (312)
T 2wpv_A 162 ----HDSMIKYVDLLWDWLCQVDDIEDSTVAEFFSRLVFNYLFISNISFAHESKDIFL 215 (312)
T ss_dssp ----HHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHTTBHHHHHHHHHHHH
T ss_pred ----CccHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 11455666666666655 6665553333332222 367777777766554
No 248
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=88.03 E-value=6.9 Score=42.20 Aligned_cols=151 Identities=11% Similarity=0.020 Sum_probs=97.6
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCcchHHHHHHHHHHCCCCC--------------
Q 038190 90 FNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSP-------------- 155 (531)
Q Consensus 90 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~-------------- 155 (531)
...++..+...+.++.+.++.... +.++...-.+..++...|++++|...|.+... |+..
T Consensus 815 ~~~l~~~l~~~~~~~~~~~l~~~~-----~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~-~~~~~~~l~~~~~~~~~~ 888 (1139)
T 4fhn_B 815 VTELVEKLFLFKQYNACMQLIGWL-----NSDPIAVYLKALIYLKSKEAVKAVRCFKTTSL-VLYSHTSQFAVLREFQEI 888 (1139)
T ss_dssp HHHHHHHHHHHSCTTHHHHHHHHS-----CCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCC-SCTTCCCSCSSHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHhhhc-----cCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhh-hhcccchhhhhhcccccc
Confidence 345666677778887777765543 23444445566788889999999999876521 1110
Q ss_pred ---------ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCCCcHHhHHHHHHHHHhcCChhHHHHHHHHHhhCC
Q 038190 156 ---------DVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRG 226 (531)
Q Consensus 156 ---------~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g 226 (531)
-..-|..++..+.+.+.++.+.++-...++.....+.......|..+.+.+...|++++|...+-.+....
T Consensus 889 ~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~ 968 (1139)
T 4fhn_B 889 AEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTP 968 (1139)
T ss_dssp HHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSS
T ss_pred cccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHH
Confidence 11235667788888888888888777666542211100012257888899999999999999888887654
Q ss_pred CCCCHhhHHHHHHHHHhcCChh
Q 038190 227 IYPDAFVYNSLIRVYCCAVNWE 248 (531)
Q Consensus 227 ~~p~~~~~~~li~~~~~~~~~~ 248 (531)
. -...+..++...|..+..+
T Consensus 969 ~--r~~cLr~LV~~lce~~~~~ 988 (1139)
T 4fhn_B 969 L--KKSCLLDFVNQLTKQGKIN 988 (1139)
T ss_dssp S--CHHHHHHHHHHHHHHCCHH
T ss_pred H--HHHHHHHHHHHHHhCCChh
Confidence 3 3455666776666665544
No 249
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=87.07 E-value=7.8 Score=28.96 Aligned_cols=70 Identities=13% Similarity=0.018 Sum_probs=50.9
Q ss_pred CCCCCHHHHHHHHHHHHcCCCh---HHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 038190 401 KFELDLTVFNCLVDGLCKSWRL---RSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK 470 (531)
Q Consensus 401 ~~~~~~~~~~~l~~~~~~~g~~---~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 470 (531)
+..|+..+--.+.+++.+..+. .+++.+++.+.+.+..-....+-.+.-++.+.|++++|.++.+.+.+.
T Consensus 35 ~~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~ 107 (134)
T 3o48_A 35 GPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 107 (134)
T ss_dssp GGGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT
T ss_pred CCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence 4456777777778888887754 568888988887542123455667778899999999998888776654
No 250
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=87.05 E-value=1.8 Score=36.97 Aligned_cols=51 Identities=10% Similarity=-0.040 Sum_probs=21.4
Q ss_pred ccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCcchHHHHHHHHHH
Q 038190 99 GKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILR 150 (531)
Q Consensus 99 ~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 150 (531)
+.|+++++++....-++.. +.|...-..++..+|-.|+++.|.+-++...+
T Consensus 9 ~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~ 59 (273)
T 1zbp_A 9 SEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIK 59 (273)
T ss_dssp TTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred hCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 3444444444444443332 33344444444444444444444444444433
No 251
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=86.44 E-value=3.1 Score=31.01 Aligned_cols=32 Identities=6% Similarity=0.064 Sum_probs=17.2
Q ss_pred CCCHHHHHHHHHHHHcCCChHHHHHHHHHhhh
Q 038190 403 ELDLTVFNCLVDGLCKSWRLRSAWELFKKLPR 434 (531)
Q Consensus 403 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 434 (531)
.|++.+..+.+++|.+.+++..|..+|+-.+.
T Consensus 85 VPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~ 116 (152)
T 2y69_E 85 VPEPKIIDAALRACRRLNDFASAVRILEVVKD 116 (152)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 34555555555555555555555555555543
No 252
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=85.86 E-value=22 Score=38.28 Aligned_cols=87 Identities=16% Similarity=0.207 Sum_probs=58.8
Q ss_pred hhHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHH
Q 038190 280 LSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDV----VVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTL 355 (531)
Q Consensus 280 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~l 355 (531)
.-|..++..+.+.+.++.+.++-....+....-+. ..|..+...+...|++++|...+-.+..... -......|
T Consensus 900 ~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~--r~~cLr~L 977 (1139)
T 4fhn_B 900 CYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPL--KKSCLLDF 977 (1139)
T ss_dssp HHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSS--CHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHH--HHHHHHHH
Confidence 34667777788888888887777665543211121 2567778888888888888888877776543 35666777
Q ss_pred HHHHHhcCCHHHH
Q 038190 356 INSYSKIEKVEEA 368 (531)
Q Consensus 356 i~~~~~~~~~~~a 368 (531)
+..++..|..+.-
T Consensus 978 V~~lce~~~~~~L 990 (1139)
T 4fhn_B 978 VNQLTKQGKINQL 990 (1139)
T ss_dssp HHHHHHHCCHHHH
T ss_pred HHHHHhCCChhhh
Confidence 7777777765543
No 253
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=85.82 E-value=7.3 Score=27.40 Aligned_cols=64 Identities=13% Similarity=0.098 Sum_probs=50.8
Q ss_pred cHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHhhhCCCCCcHHHHHHHHHH
Q 038190 386 CILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICG 450 (531)
Q Consensus 386 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~ 450 (531)
+.-+..+-++.+......|++.+..+.+++|.+.+++..|.++|+-.+.+ +.+...+|..+++-
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K-~~~~~~iY~~~lqE 88 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQE 88 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-hcCchhhHHHHHHH
Confidence 34456677778888899999999999999999999999999999998864 23344567766643
No 254
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=85.15 E-value=2.3 Score=33.26 Aligned_cols=22 Identities=5% Similarity=-0.067 Sum_probs=13.7
Q ss_pred HHHHHHhcCCCHHHHHHHHHHH
Q 038190 284 SIINSLCKDVLVDKAKELFLDM 305 (531)
Q Consensus 284 ~ll~~~~~~~~~~~a~~~~~~~ 305 (531)
-+..+|.+.+++++|+.+++.+
T Consensus 127 kia~C~~~l~~~~~Ai~~Le~I 148 (167)
T 3ffl_A 127 KLAECYTVLKQDKDAIAILDGI 148 (167)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTS
T ss_pred HHHHHHHHHCCHHHHHHHHhcC
Confidence 3556666666666666666554
No 255
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=85.12 E-value=23 Score=32.54 Aligned_cols=93 Identities=16% Similarity=0.059 Sum_probs=64.5
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHhCCCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--CCCCCHHHHHHH-
Q 038190 284 SIINSLCKDVLVDKAKELFLDMKSRGIIPD-----VVVYSSLIDGYCLMGRIDDARKLFVSIESE--GCIPDTSSYNTL- 355 (531)
Q Consensus 284 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~--g~~p~~~~~~~l- 355 (531)
.++..|...|++.+|..++..+.+.--..| ..++..-++.|...+++.++...+...... .+.+++..-..+
T Consensus 104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i~ 183 (394)
T 3txn_A 104 RLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGALD 183 (394)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHHH
Confidence 578899999999999999988876421212 334566677889999999999999887643 222333322221
Q ss_pred ---HHHHH-hcCCHHHHHHHHHHHH
Q 038190 356 ---INSYS-KIEKVEEALSLYGEMI 376 (531)
Q Consensus 356 ---i~~~~-~~~~~~~a~~~~~~~~ 376 (531)
...+. ..+++..|...|-+..
T Consensus 184 ~~~Gi~~l~~~rdyk~A~~~F~eaf 208 (394)
T 3txn_A 184 LQSGILHAADERDFKTAFSYFYEAF 208 (394)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred HHhhHHHHHhccCHHHHHHHHHHHH
Confidence 22445 7899999998887654
No 256
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=83.34 E-value=12 Score=27.93 Aligned_cols=50 Identities=12% Similarity=0.059 Sum_probs=43.6
Q ss_pred ChHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 038190 421 RLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK 470 (531)
Q Consensus 421 ~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 470 (531)
|.-+..+-++.+....+.|++....+.+.+|.+.+++.-|+++|+-++.+
T Consensus 68 D~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K 117 (152)
T 2y69_E 68 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK 117 (152)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 45567777788877888999999999999999999999999999887776
No 257
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=80.34 E-value=36 Score=31.29 Aligned_cols=168 Identities=11% Similarity=-0.078 Sum_probs=99.2
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHhCC-CCC---CHhhHHHHHHHHHccCC-cchHHH----HHHHHHHCCC-CCChh
Q 038190 89 SFNSLLGALAGKKYYVNFICLSERLNTIG-LLP---DFVSLNILMNCFCKMIG-VSDAFV----ALGRILRKVF-SPDVV 158 (531)
Q Consensus 89 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g-~~~---~~~~~~~li~~~~~~g~-~~~a~~----~~~~~~~~~~-~~~~~ 158 (531)
+...|...|.+.|+.++..+++......= .-+ .......++..+....+ .+.-.+ .+++.....- -....
T Consensus 21 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~flr~~ 100 (394)
T 3txn_A 21 GILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFLRQS 100 (394)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678888999999999999888764321 111 23346677777766533 233333 3333333210 00001
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCC-CCcHHhHHHHHHHHHhcCChhHHHHHHHHHhhC--CCCCCHhhHH
Q 038190 159 TLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNV-IPNVICYASIIDGLCKDGFVNKVRVLFLDMKGR--GIYPDAFVYN 235 (531)
Q Consensus 159 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~--g~~p~~~~~~ 235 (531)
+-.-++..|...|++.+|..++.++...-...+. .--..++..-+..|...+++.++...+...... .+.+++..-
T Consensus 101 l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~- 179 (394)
T 3txn_A 101 LEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQ- 179 (394)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHH-
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHH-
Confidence 1225789999999999999999988864222110 012335667778899999999999999887542 232333322
Q ss_pred HHHH-----HHH-hcCChhhhhcchHHH
Q 038190 236 SLIR-----VYC-CAVNWEDAKGNTSAA 257 (531)
Q Consensus 236 ~li~-----~~~-~~~~~~~a~~~~~~a 257 (531)
..++ .+. ..+++..|...+-++
T Consensus 180 a~i~~~~Gi~~l~~~rdyk~A~~~F~ea 207 (394)
T 3txn_A 180 GALDLQSGILHAADERDFKTAFSYFYEA 207 (394)
T ss_dssp HHHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHhccCHHHHHHHHHHH
Confidence 2222 234 566777776644444
No 258
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=79.43 E-value=12 Score=35.14 Aligned_cols=65 Identities=9% Similarity=-0.145 Sum_probs=53.2
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCCCcHHhHHHHHHHHHhcCChhHHHHHHHHHhh
Q 038190 158 VTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKG 224 (531)
Q Consensus 158 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 224 (531)
.++..+...|.+.|+++.|.+.|.++...-..++ .-...+-.+++.+...+++..+...+.+...
T Consensus 132 ~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~--~kid~~l~~irl~l~~~d~~~~~~~~~ka~~ 196 (429)
T 4b4t_R 132 QAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTG--AKIDVMLTIARLGFFYNDQLYVKEKLEAVNS 196 (429)
T ss_dssp SCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCC--SHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChH--HHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 3677899999999999999999999987543332 3566788889999999999999999988753
No 259
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=78.85 E-value=30 Score=29.60 Aligned_cols=55 Identities=18% Similarity=0.275 Sum_probs=41.4
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCCCCCcHHhHHHHHHHHHhcCChhHHHHHHHHHhhC
Q 038190 166 GLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGR 225 (531)
Q Consensus 166 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 225 (531)
.+.+.|++++|+.....-++. .|. |...-..|+..+|-.|+++.|.+-++...+.
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~--~P~---da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l 60 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKA--SPK---DASLRSSFIELLCIDGDFERADEQLMQSIKL 60 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHT--CTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHh--CCc---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 455678888888877777665 553 7777778888888888888888888777664
No 260
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=78.72 E-value=36 Score=30.35 Aligned_cols=170 Identities=11% Similarity=0.001 Sum_probs=93.1
Q ss_pred hHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH----HHHHhcCCCCCHHHHHHHH
Q 038190 281 SYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLF----VSIESEGCIPDTSSYNTLI 356 (531)
Q Consensus 281 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~----~~~~~~g~~p~~~~~~~li 356 (531)
+|.++..-|.+.+++++|.+++..-- ..+.+.|+...|.++- +-+.+.++++|......++
T Consensus 37 ~~RTi~~Ry~~~k~y~eAidLL~~GA---------------~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~ 101 (336)
T 3lpz_A 37 ETRLVAARYSKQGNWAAAVDILASVS---------------QTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLL 101 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHH---------------HHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHH
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHH---------------HHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 45556666778888888888765432 2245556655554443 4455667777776666666
Q ss_pred HHHHhcCCHHH-HHHHHHHHHhCCCCCCcccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHhhhC
Q 038190 357 NSYSKIEKVEE-ALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRY 435 (531)
Q Consensus 357 ~~~~~~~~~~~-a~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 435 (531)
..+.....-+- =..+.+++. ..-... .....-|+.....+...|.+.+++.+|...|- .
T Consensus 102 ~L~~~~~~~~p~r~~fi~~ai---------------~WS~~~-g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i--l-- 161 (336)
T 3lpz_A 102 GCLRLFQPGEPVRKRFVKEMI---------------DWSKKF-GDYPAGDPELHHVVGTLYVEEGEFEAAEKHLV--L-- 161 (336)
T ss_dssp HHHTTSCTTCHHHHHHHHHHH---------------HHHHHH-SSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHT--T--
T ss_pred HHHHhCCCCCcHHHHHHHHHH---------------HHHhhc-CCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH--h--
Confidence 66654432111 111222221 111110 01122377788888999999999999988872 2
Q ss_pred CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH---HhhHHHHHHHHHHHH
Q 038190 436 GPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK---IRECLKAIELLHKMA 485 (531)
Q Consensus 436 g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---i~~~~~a~~~~~~~~ 485 (531)
|-.+.+..|..++.-+...+...++--++-+..-. +++...|..+++...
T Consensus 162 g~~~s~~~~a~mL~ew~~~~~~~e~dlfiaRaVL~yL~l~n~~~A~~~~~~f~ 214 (336)
T 3lpz_A 162 GTKESPEVLARMEYEWYKQDESHTAPLYCARAVLPYLLVANVRAANTAYRIFT 214 (336)
T ss_dssp SCTTHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cCCchHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 23444567766666665554433332222222221 366666666555444
No 261
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=78.70 E-value=19 Score=27.27 Aligned_cols=68 Identities=13% Similarity=0.020 Sum_probs=49.5
Q ss_pred CCCHHHHHHHHHHHHcCCC---hHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 038190 403 ELDLTVFNCLVDGLCKSWR---LRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK 470 (531)
Q Consensus 403 ~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 470 (531)
.|+..+--.+.+++.+..+ ..+++.+++.+.+.+..-.....-.+.-++.+.|++++|.++.+.+.+.
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~ 106 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 106 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 5677777778888888775 4568888888877432223445556777899999999998888877665
No 262
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=77.83 E-value=57 Score=32.18 Aligned_cols=29 Identities=21% Similarity=0.002 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHhhh
Q 038190 406 LTVFNCLVDGLCKSWRLRSAWELFKKLPR 434 (531)
Q Consensus 406 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 434 (531)
....--+.+++...|+.++|..+|..+.+
T Consensus 319 ~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 319 DEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 33344566677777888888888877764
No 263
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=77.70 E-value=18 Score=33.92 Aligned_cols=63 Identities=6% Similarity=-0.141 Sum_probs=46.6
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHhhhC--CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 038190 408 VFNCLVDGLCKSWRLRSAWELFKKLPRY--GPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK 470 (531)
Q Consensus 408 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~--g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 470 (531)
+...+...|.+.|+++.|.+++.++... +..--...+-.++..+...+++..+...++++...
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~ 197 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSM 197 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 5667888888888888888888888763 22333556777778888888888888888776554
No 264
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=77.08 E-value=24 Score=28.60 Aligned_cols=56 Identities=13% Similarity=0.055 Sum_probs=35.2
Q ss_pred CHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHhhhCCCCCc
Q 038190 364 KVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPN 440 (531)
Q Consensus 364 ~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~ 440 (531)
...++..+|..|...|+-.. -...|......+...|++.+|..+|+.-++.+-+|-
T Consensus 94 ~~~~p~~if~~L~~~~IG~~---------------------~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P~ 149 (202)
T 3esl_A 94 NFHESENTFKYMFNKGIGTK---------------------LSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRPY 149 (202)
T ss_dssp CHHHHHHHHHHHHHHTSSTT---------------------BHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSH
T ss_pred ccCCHHHHHHHHHHCCCcHH---------------------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccH
Confidence 35566666666666554432 455666666777777777777777777766655553
No 265
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=75.64 E-value=54 Score=30.80 Aligned_cols=178 Identities=10% Similarity=0.006 Sum_probs=109.9
Q ss_pred ccCCHhhHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH----hcCCHHHH--HHHHHHHHh--cC-C
Q 038190 275 CHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYC----LMGRIDDA--RKLFVSIES--EG-C 345 (531)
Q Consensus 275 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~----~~g~~~~a--~~~~~~~~~--~g-~ 345 (531)
..........++..|...++++...+.+..+.+..-. -......+++.+. .....+.. ..+.+.+.. .| +
T Consensus 52 ~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~q-lk~ai~~~V~~~~~~l~~~~~~d~~~~~~~i~~l~~vte~ki 130 (445)
T 4b4t_P 52 LASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQ-LKLSIQYMIQKVMEYLKSSKSLDLNTRISVIETIRVVTENKI 130 (445)
T ss_dssp TTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTT-SHHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHCCSSSSSCCC
T ss_pred hhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhccch
Confidence 3455667888999999999999998888766654222 2222334443332 22322221 122211111 01 1
Q ss_pred CC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCh
Q 038190 346 IP---DTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRL 422 (531)
Q Consensus 346 ~p---~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 422 (531)
-. .......|...|...|++.+|..++..+.......+.. .--...+..-++.|...+++
T Consensus 131 flE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~-----------------~~kve~~l~q~rl~l~~~d~ 193 (445)
T 4b4t_P 131 FVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEM-----------------SEKIQFILEQMELSILKGDY 193 (445)
T ss_dssp CCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCH-----------------HHHHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccH-----------------HHHHHHHHHHHHHHHHCCCH
Confidence 11 12234567888999999999999999986432111100 00134677788899999999
Q ss_pred HHHHHHHHHhhh----CCCCCc--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 038190 423 RSAWELFKKLPR----YGPEPN--VVTYTVMICGLCIEGGIEKAYDLLPDMEEK 470 (531)
Q Consensus 423 ~~A~~~~~~~~~----~g~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 470 (531)
..|..++.++.. ....|+ ...|..++..+...+++.+|.+.|.++...
T Consensus 194 ~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~ 247 (445)
T 4b4t_P 194 SQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQT 247 (445)
T ss_dssp HHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 999999998753 222222 335667777888899999999888887665
No 266
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=75.15 E-value=83 Score=32.73 Aligned_cols=53 Identities=15% Similarity=0.053 Sum_probs=24.2
Q ss_pred HhcCCCHHHHHHHHHHHHhCCCCCCHHHHH--HHHHHHHhcCCHHHHHHHHHHHHh
Q 038190 289 LCKDVLVDKAKELFLDMKSRGIIPDVVVYS--SLIDGYCLMGRIDDARKLFVSIES 342 (531)
Q Consensus 289 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~ll~~~~~~g~~~~a~~~~~~~~~ 342 (531)
+...|+.+.+..+++.+... ..|....-. ++.-+|+..|+.....+++..+..
T Consensus 534 ll~~g~~e~~~~li~~L~~~-~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~ 588 (963)
T 4ady_A 534 LINYGRQELADDLITKMLAS-DESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVS 588 (963)
T ss_dssp HHTTTCGGGGHHHHHHHHHC-SCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH
T ss_pred hhhCCChHHHHHHHHHHHhC-CCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhcc
Confidence 33555555555555555543 111111111 122234455565555556655554
No 267
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=74.13 E-value=46 Score=29.34 Aligned_cols=117 Identities=9% Similarity=-0.028 Sum_probs=61.1
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChhhhhcchHHHHHHHHHHHhCCCCCCccccC
Q 038190 198 CYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHP 277 (531)
Q Consensus 198 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~ 277 (531)
.|.++..=|.+.+++++|.+++..-.. .+.+.|....+.+ .+.-+.+.+.+.+ .++
T Consensus 35 ~~Rtl~~Ry~~~~~~~eAidlL~~ga~---------------~ll~~~Q~~sa~D---La~llvev~~~~~------~~~ 90 (312)
T 2wpv_A 35 TLRTIANRYVRSKSYEHAIELISQGAL---------------SFLKAKQGGSGTD---LIFYLLEVYDLAE------VKV 90 (312)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH---------------HHHHTTCHHHHHH---HHHHHHHHHHHTT------CCC
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHH---------------HHHHCCCcchHHH---HHHHHHHHHHHcC------CCC
Confidence 455556667788888888887654321 1222232222222 1111333334444 555
Q ss_pred CHhhHHHHHHHHhcCCC-----HHHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 038190 278 DVLSYCSIINSLCKDVL-----VDKAKELFLDMKSRG--IIPDVVVYSSLIDGYCLMGRIDDARKLFV 338 (531)
Q Consensus 278 ~~~~~~~ll~~~~~~~~-----~~~a~~~~~~~~~~~--~~~~~~~~~~ll~~~~~~g~~~~a~~~~~ 338 (531)
+......++..+..... .+-..+...+-.+.| ..-++.....+...|.+.|++.+|+..|-
T Consensus 91 ~~~~~~rl~~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i 158 (312)
T 2wpv_A 91 DDISVARLVRLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFM 158 (312)
T ss_dssp SHHHHHHHHHHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHH
Confidence 66555555555544221 122223333333332 22366777777788888888888777663
No 268
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=68.70 E-value=46 Score=27.02 Aligned_cols=73 Identities=15% Similarity=0.021 Sum_probs=50.6
Q ss_pred CCCHHHHHHHHHHHHh--cCCHHHHHHHHHHHHhcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 038190 311 IPDVVVYSSLIDGYCL--MGRIDDARKLFVSIESEGCIP-DTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD 383 (531)
Q Consensus 311 ~~~~~~~~~ll~~~~~--~g~~~~a~~~~~~~~~~g~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~ 383 (531)
.-|..-....+...-. ++....+.++|..|...|+-. -...|......+...|++.+|.++|+.-++.+-.|-
T Consensus 74 kND~RYLklWl~Ya~~~~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P~ 149 (202)
T 3esl_A 74 RNDPRFLKIWIWYINLFLSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRPY 149 (202)
T ss_dssp TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSH
T ss_pred cCCHHHHHHHHHHHHhhcccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccH
Confidence 4455444444432222 455778888998888876643 455677777788888999999999988888777773
No 269
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=68.68 E-value=37 Score=29.02 Aligned_cols=119 Identities=14% Similarity=0.015 Sum_probs=49.5
Q ss_pred HHHHHHccCCHHHHHHHHHHHHhCCCCCCHh---hHHHHHHHHHccCCcchHHHHHHHHHHCCCCCChhh--HHHHHHHH
Q 038190 93 LLGALAGKKYYVNFICLSERLNTIGLLPDFV---SLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVT--LGCLIRGL 167 (531)
Q Consensus 93 li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~---~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~--~~~li~~~ 167 (531)
.+...++.|+.+.+..++ +.|..++.. .-...+...+..|+.+-+ +.+++.|..++... -.+.+...
T Consensus 8 ~L~~A~~~g~~~~v~~Ll----~~g~~~~~~~~~~g~t~L~~A~~~g~~~~v----~~Ll~~g~~~~~~~~~g~t~L~~A 79 (285)
T 1wdy_A 8 LLIKAVQNEDVDLVQQLL----EGGANVNFQEEEGGWTPLHNAVQMSREDIV----ELLLRHGADPVLRKKNGATPFLLA 79 (285)
T ss_dssp HHHHHHHTTCHHHHHHHH----HTTCCTTCCCTTTCCCHHHHHHHTTCHHHH----HHHHHTTCCTTCCCTTCCCHHHHH
T ss_pred HHHHHHHcCCHHHHHHHH----HcCCCcccccCCCCCcHHHHHHHcCCHHHH----HHHHHcCCCCcccCCCCCCHHHHH
Confidence 344455667665444443 444333221 111233344455665433 34444554443221 11233344
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCCCCCcHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCC
Q 038190 168 CMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYP 229 (531)
Q Consensus 168 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p 229 (531)
+..|+.+ +++.+.+.|..++.. +..-++. +...+..|+.+- ++.+.+.|..+
T Consensus 80 ~~~~~~~----~v~~Ll~~g~~~~~~-~~~g~t~-L~~A~~~~~~~~----~~~Ll~~g~~~ 131 (285)
T 1wdy_A 80 AIAGSVK----LLKLFLSKGADVNEC-DFYGFTA-FMEAAVYGKVKA----LKFLYKRGANV 131 (285)
T ss_dssp HHHTCHH----HHHHHHHTTCCTTCB-CTTCCBH-HHHHHHTTCHHH----HHHHHHTTCCT
T ss_pred HHcCCHH----HHHHHHHcCCCCCcc-CcccCCH-HHHHHHhCCHHH----HHHHHHhCCCc
Confidence 4556654 344444445443221 2222222 333445566543 34444444443
No 270
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=65.61 E-value=56 Score=26.95 Aligned_cols=27 Identities=11% Similarity=-0.130 Sum_probs=15.3
Q ss_pred HHHHHccCCHHHHHHHHHHHHhCCCCC
Q 038190 94 LGALAGKKYYVNFICLSERLNTIGLLP 120 (531)
Q Consensus 94 i~~~~~~~~~~~a~~~~~~m~~~g~~~ 120 (531)
+...++.|+.+.+..+++.+.+.|..+
T Consensus 13 L~~A~~~g~~~~v~~Ll~~~~~~~~~~ 39 (241)
T 1k1a_A 13 LHIAVVQGNLPAVHRLVNLFQQGGREL 39 (241)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTTCCS
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCC
Confidence 334445667666666666655555443
No 271
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=64.73 E-value=46 Score=25.60 Aligned_cols=52 Identities=12% Similarity=0.135 Sum_probs=36.1
Q ss_pred HHHHHHHHHhCCCCCCcccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHhhhCCCCCc
Q 038190 368 ALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPN 440 (531)
Q Consensus 368 a~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~ 440 (531)
+.++|..|...|+-.. -...|......+...|++.+|.++|+.-++.+-+|-
T Consensus 84 p~~if~~L~~~~IG~~---------------------~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~ 135 (152)
T 4a1g_A 84 LHQFFEFLYNHGIGTL---------------------SSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEPR 135 (152)
T ss_dssp HHHHHHHHHTTTTTTT---------------------BHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSH
T ss_pred HHHHHHHHHHCCCcHH---------------------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccH
Confidence 5666666666655432 456677777777778888888888887777666664
No 272
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=64.65 E-value=50 Score=31.49 Aligned_cols=71 Identities=10% Similarity=0.029 Sum_probs=46.4
Q ss_pred cHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChhhhhcchHHHHHHHHHHHhCC
Q 038190 195 NVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGN 268 (531)
Q Consensus 195 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~ 268 (531)
-...+|.+++.|...+.++.|..+..+..- +.+..+-+..+.-+.-.|+.......|.+|.+.+.......
T Consensus 230 qa~l~nllLRnYL~~~~y~qA~~lvsk~~f---P~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rka 300 (523)
T 4b4t_S 230 KAMLINLILRDFLNNGEVDSASDFISKLEY---PHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKA 300 (523)
T ss_dssp HHHHHHHHHHHHHHSSCSTTHHHHHHHHCS---CTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSC
T ss_pred hHHHHHHHHHHHHccCcHHHHHHHHhcCcC---CcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 456799999999999999999999998752 21222333344444444555555555666655777766543
No 273
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=59.37 E-value=1.2e+02 Score=28.88 Aligned_cols=111 Identities=12% Similarity=0.028 Sum_probs=70.4
Q ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHhhhCC-CCCcH--HHHH-HHHHHHHHcCCHHHHHHHHHHHHHH-------HhhH
Q 038190 406 LTVFNCLVDGLCKSWRLRSAWELFKKLPRYG-PEPNV--VTYT-VMICGLCIEGGIEKAYDLLPDMEEK-------IREC 474 (531)
Q Consensus 406 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g-~~p~~--~~~~-~l~~~~~~~g~~~~A~~~~~~~~~~-------i~~~ 474 (531)
...+|.+++.|...+.++.|..+..+..--. -.++. ..|. .+...+.-.+++.+|.+.|....++ .|..
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~~~~a~gfr 310 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPHNSKSLGFL 310 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSCSSSCSHHH
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchhhhhHH
Confidence 4568999999999999999999999886210 01121 2333 3456677899999999998887654 2334
Q ss_pred HHHHHHHH--HHHHcCCCCCHHH------------HHHHHHHHhccCChhHHHhhHHH
Q 038190 475 LKAIELLH--KMAKRYVKPDEIT------------VSILEELLNKDENCHECMNLLPS 518 (531)
Q Consensus 475 ~~a~~~~~--~~~~~~~~~~~~~------------~~~l~~~~~~~g~~~~a~~~~~~ 518 (531)
..+.+++- +++ .|--|+... |..|+.++ +.|+.++-...+++
T Consensus 311 ~~a~K~lI~V~LL-lG~iP~r~lf~q~~l~~~L~pY~~Lv~Av-r~GdL~~F~~~L~~ 366 (523)
T 4b4t_S 311 QQSNKLHCCIQLL-MGDIPELSFFHQSNMQKSLLPYYHLTKAV-KLGDLKKFTSTITK 366 (523)
T ss_dssp HHHHHHHHHHHHH-HTCCCCHHHHTTTSCHHHHHHHHHHHHHH-HHTCHHHHHHHHHH
T ss_pred HHHHHHHHhHHhh-cCCCCChHHhhchhHHHHHHHHHHHHHHH-HcCCHHHHHHHHHH
Confidence 44443322 222 355565443 44455554 66887776666554
No 274
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=56.38 E-value=49 Score=23.21 Aligned_cols=47 Identities=9% Similarity=-0.138 Sum_probs=19.3
Q ss_pred HccCCcchHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 038190 133 CKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVA 185 (531)
Q Consensus 133 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 185 (531)
...|++++|..+.+.. ..||...|-+|. -.+.|..+++..-+.++..
T Consensus 50 mNrG~Yq~Al~l~~~~----c~pdlepw~ALc--e~rlGl~s~le~rL~~la~ 96 (115)
T 2uwj_G 50 ANQGRYQEALAFAHGN----PWPALEPWFALC--EWHLGLGAALDRRLAGLGG 96 (115)
T ss_dssp HHTTCHHHHHGGGTTC----CCGGGHHHHHHH--HHHTTCHHHHHHHHHHHHT
T ss_pred HcchhHHHHHHhcCCC----CCchHHHHHHHH--HHhcccHHHHHHHHHHHHh
Confidence 3445555544433222 134444444332 2344444444444444433
No 275
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=55.67 E-value=72 Score=24.91 Aligned_cols=54 Identities=15% Similarity=0.155 Sum_probs=39.6
Q ss_pred HHHHHHHHHhCCCCCCcccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHhhhCCCCCcHH
Q 038190 368 ALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVV 442 (531)
Q Consensus 368 a~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~ 442 (531)
+..+|..|...|+-.. -...|......+...|++.+|.++|+.-++.+-+|...
T Consensus 79 p~~if~~L~~~~IG~~---------------------~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~~~ 132 (164)
T 2wvi_A 79 PLDMYSYLHNQGIGVS---------------------LAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPLER 132 (164)
T ss_dssp HHHHHHHHHHTTSSTT---------------------BHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHH
T ss_pred HHHHHHHHHHCCcchh---------------------hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHH
Confidence 5566777777665432 56677888888888888888888888888877677543
No 276
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=55.59 E-value=51 Score=23.17 Aligned_cols=14 Identities=7% Similarity=0.124 Sum_probs=6.4
Q ss_pred HccCCHHHHHHHHH
Q 038190 98 AGKKYYVNFICLSE 111 (531)
Q Consensus 98 ~~~~~~~~a~~~~~ 111 (531)
...|+|++|..+.+
T Consensus 51 mNrG~Yq~Al~l~~ 64 (116)
T 2p58_C 51 MNRGDYASALQQGN 64 (116)
T ss_dssp HHTTCHHHHHHHHT
T ss_pred HcchhHHHHHHhcC
Confidence 34444554444443
No 277
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=54.63 E-value=51 Score=28.47 Aligned_cols=9 Identities=11% Similarity=0.246 Sum_probs=3.7
Q ss_pred CHHHHHHHH
Q 038190 67 ELNDALCFF 75 (531)
Q Consensus 67 ~~~~A~~~~ 75 (531)
+..+..+++
T Consensus 11 ~~~~v~~lL 19 (285)
T 3kea_A 11 KSKQLKSFL 19 (285)
T ss_dssp CHHHHHHHH
T ss_pred CHHHHHHHH
Confidence 344444444
No 278
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=51.85 E-value=59 Score=29.12 Aligned_cols=25 Identities=12% Similarity=0.032 Sum_probs=15.9
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHH
Q 038190 282 YCSIINSLCKDVLVDKAKELFLDMK 306 (531)
Q Consensus 282 ~~~ll~~~~~~~~~~~a~~~~~~~~ 306 (531)
...++.-|...|+.++|.+.++++.
T Consensus 14 ~~~ll~Ey~~~~d~~Ea~~ci~el~ 38 (339)
T 1ug3_A 14 SKAIIEEYLHLNDMKEAVQCVQELA 38 (339)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTC
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHcC
Confidence 4556666666677777766666553
No 279
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=49.60 E-value=1.1e+02 Score=25.11 Aligned_cols=16 Identities=13% Similarity=0.057 Sum_probs=9.8
Q ss_pred chHHHHHHHHHHHhCC
Q 038190 253 NTSAALELHEEFVNGN 268 (531)
Q Consensus 253 ~~~~a~~~~~~~~~~~ 268 (531)
.++.|+.+|+.+....
T Consensus 87 PLESAl~v~~~I~~e~ 102 (235)
T 3bu8_A 87 PLESAINVLEMIKTEF 102 (235)
T ss_dssp HHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHhh
Confidence 4556666777666544
No 280
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=48.30 E-value=86 Score=24.07 Aligned_cols=64 Identities=16% Similarity=0.232 Sum_probs=29.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC--HHHHHHHHHHHHhCCCCC
Q 038190 318 SSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEK--VEEALSLYGEMISMGVRP 382 (531)
Q Consensus 318 ~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~~~--~~~a~~~~~~~~~~~~~~ 382 (531)
..++.-|...|+.++|.+.++++...... ...+...+..++-+.++ .+.+..++..+...++.+
T Consensus 13 ~~lL~EY~~~~D~~EA~~cl~EL~~p~f~-~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is 78 (152)
T 2ion_A 13 DMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTIT 78 (152)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHTCGGGH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSC
T ss_pred HHHHHHHHhCCCHHHHHHHHHHhCCCcch-HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcC
Confidence 44555566666666666666665421100 12223333334443222 334555555555555443
No 281
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=47.55 E-value=1e+02 Score=25.10 Aligned_cols=19 Identities=11% Similarity=-0.270 Sum_probs=9.5
Q ss_pred HHHHhcCCHHHHHHHHHHH
Q 038190 322 DGYCLMGRIDDARKLFVSI 340 (531)
Q Consensus 322 ~~~~~~g~~~~a~~~~~~~ 340 (531)
....+.|+.+-+..+++..
T Consensus 215 ~~A~~~~~~~~v~~L~~~~ 233 (240)
T 3eu9_A 215 DLAKQRKNVWMINHLQEAR 233 (240)
T ss_dssp HHHHHTTCHHHHHHHHHHC
T ss_pred HHHHHcCcHHHHHHHHHhh
Confidence 3344556655555554443
No 282
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=46.68 E-value=53 Score=27.15 Aligned_cols=36 Identities=14% Similarity=0.116 Sum_probs=24.9
Q ss_pred CHHHHHHHHHHHHcCCChHHHHHHHHHhhhCCCCCc
Q 038190 405 DLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPN 440 (531)
Q Consensus 405 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~ 440 (531)
-...|......+...|++.+|..+|+.-++.+-+|-
T Consensus 149 ~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~ 184 (223)
T 4aez_C 149 SSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKPF 184 (223)
T ss_dssp BHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBSH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccH
Confidence 455677777777777777777777777776655553
No 283
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=45.92 E-value=84 Score=25.84 Aligned_cols=45 Identities=2% Similarity=-0.168 Sum_probs=22.4
Q ss_pred HHHHccCCcchHHHHHHHHHHCCCCCChhh--HHHHHHHHHhcCChH
Q 038190 130 NCFCKMIGVSDAFVALGRILRKVFSPDVVT--LGCLIRGLCMQGKFT 174 (531)
Q Consensus 130 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~--~~~li~~~~~~g~~~ 174 (531)
...+..|+.+.+..+++.+.+.|..++... -.+.+...+..|+.+
T Consensus 14 ~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~ 60 (241)
T 1k1a_A 14 HIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPS 60 (241)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHH
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHH
Confidence 334455777766666666555554433221 112334444556544
No 284
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=45.44 E-value=95 Score=26.26 Aligned_cols=209 Identities=7% Similarity=-0.074 Sum_probs=93.0
Q ss_pred HHHHHHccCCcchHHHHHHHHHHCCCCCChh---hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCCCcHHhHHHHHH
Q 038190 128 LMNCFCKMIGVSDAFVALGRILRKVFSPDVV---TLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIID 204 (531)
Q Consensus 128 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~---~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 204 (531)
.+...++.|+.+.+..++ +.|..++.. .-.+.+...+..|+.+ +++.+.+.|..+... +..-.+ .+.
T Consensus 8 ~L~~A~~~g~~~~v~~Ll----~~g~~~~~~~~~~g~t~L~~A~~~g~~~----~v~~Ll~~g~~~~~~-~~~g~t-~L~ 77 (285)
T 1wdy_A 8 LLIKAVQNEDVDLVQQLL----EGGANVNFQEEEGGWTPLHNAVQMSRED----IVELLLRHGADPVLR-KKNGAT-PFL 77 (285)
T ss_dssp HHHHHHHTTCHHHHHHHH----HTTCCTTCCCTTTCCCHHHHHHHTTCHH----HHHHHHHTTCCTTCC-CTTCCC-HHH
T ss_pred HHHHHHHcCCHHHHHHHH----HcCCCcccccCCCCCcHHHHHHHcCCHH----HHHHHHHcCCCCccc-CCCCCC-HHH
Confidence 444556677776555544 455444322 1123455666778765 444455555554321 222222 333
Q ss_pred HHHhcCChhHHHHHHHHHhhCCCCCCHh---hHHHHHHHHHhcCChhhhhcchHHHHHHHHHHHhCCCCCCccccC----
Q 038190 205 GLCKDGFVNKVRVLFLDMKGRGIYPDAF---VYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHP---- 277 (531)
Q Consensus 205 ~~~~~~~~~~a~~~~~~m~~~g~~p~~~---~~~~li~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~---- 277 (531)
..+..|+.+- ++.+.+.|..++.. -++.+ ...+..|+.+ +++.+.+.+.........
T Consensus 78 ~A~~~~~~~~----v~~Ll~~g~~~~~~~~~g~t~L-~~A~~~~~~~-----------~~~~Ll~~g~~~~~~~~~~~~~ 141 (285)
T 1wdy_A 78 LAAIAGSVKL----LKLFLSKGADVNECDFYGFTAF-MEAAVYGKVK-----------ALKFLYKRGANVNLRRKTKEDQ 141 (285)
T ss_dssp HHHHHTCHHH----HHHHHHTTCCTTCBCTTCCBHH-HHHHHTTCHH-----------HHHHHHHTTCCTTCCCCCCHHH
T ss_pred HHHHcCCHHH----HHHHHHcCCCCCccCcccCCHH-HHHHHhCCHH-----------HHHHHHHhCCCcccccccHHHH
Confidence 4455666554 44444555544322 12223 3334444433 444555554211100000
Q ss_pred ---CHhhHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHH-
Q 038190 278 ---DVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDV---VVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTS- 350 (531)
Q Consensus 278 ---~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~- 350 (531)
+.... ..+...+..|+.+.+..+++. .|..++. .-.+.+ ...+..|+.....++++.+.+.|..++..
T Consensus 142 ~~~~~~g~-t~L~~A~~~~~~~~v~~Ll~~---~~~~~~~~~~~g~t~l-~~a~~~~~~~~~~~i~~~Ll~~g~~~~~~~ 216 (285)
T 1wdy_A 142 ERLRKGGA-TALMDAAEKGHVEVLKILLDE---MGADVNACDNMGRNAL-IHALLSSDDSDVEAITHLLLDHGADVNVRG 216 (285)
T ss_dssp HHTTCCCC-CHHHHHHHHTCHHHHHHHHHT---SCCCTTCCCTTSCCHH-HHHHHCSCTTTHHHHHHHHHHTTCCSSCCC
T ss_pred HhhccCCC-cHHHHHHHcCCHHHHHHHHHh---cCCCCCccCCCCCCHH-HHHHHccccchHHHHHHHHHHcCCCCCCcC
Confidence 11111 233444556666544444332 1433321 222223 33344566555566777777777655432
Q ss_pred --HHHHHHHHHHhcCCHHHH
Q 038190 351 --SYNTLINSYSKIEKVEEA 368 (531)
Q Consensus 351 --~~~~li~~~~~~~~~~~a 368 (531)
-.+. +...+..|+.+-+
T Consensus 217 ~~g~t~-L~~A~~~~~~~~v 235 (285)
T 1wdy_A 217 ERGKTP-LILAVEKKHLGLV 235 (285)
T ss_dssp TTSCCH-HHHHHHTTCHHHH
T ss_pred CCCCcH-HHHHHHcCCHHHH
Confidence 1222 3333445665443
No 285
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=44.45 E-value=81 Score=25.81 Aligned_cols=14 Identities=14% Similarity=-0.097 Sum_probs=5.9
Q ss_pred HhcCCHHHHHHHHH
Q 038190 360 SKIEKVEEALSLYG 373 (531)
Q Consensus 360 ~~~~~~~~a~~~~~ 373 (531)
.+.|+.+-+..+++
T Consensus 218 ~~~~~~~~v~~L~~ 231 (240)
T 3eu9_A 218 KQRKNVWMINHLQE 231 (240)
T ss_dssp HHTTCHHHHHHHHH
T ss_pred HHcCcHHHHHHHHH
Confidence 34444444443333
No 286
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=44.35 E-value=1.1e+02 Score=26.29 Aligned_cols=16 Identities=0% Similarity=-0.099 Sum_probs=7.2
Q ss_pred HHHHHccCCcchHHHH
Q 038190 129 MNCFCKMIGVSDAFVA 144 (531)
Q Consensus 129 i~~~~~~g~~~~a~~~ 144 (531)
+...+..|+.+-+..+
T Consensus 66 L~~A~~~g~~~~v~~L 81 (285)
T 3kea_A 66 LHQAATLEDTKIVKIL 81 (285)
T ss_dssp HHHHTTSSSCHHHHHH
T ss_pred HHHHHHcCCHHHHHHH
Confidence 3334455555544333
No 287
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=44.32 E-value=1e+02 Score=23.34 Aligned_cols=58 Identities=14% Similarity=0.044 Sum_probs=24.4
Q ss_pred HHhCCCCCCHhhHHHHHHHHHccCCcchHHHHHHHHHHCCCCCChhhHHHHHHHHHhcC
Q 038190 113 LNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQG 171 (531)
Q Consensus 113 m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 171 (531)
+.+.|++++.. -..++..+...+..-.|.++++.+.+.++..+..|.--.+..+...|
T Consensus 13 l~~~g~r~T~q-R~~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 70 (145)
T 2fe3_A 13 LKETGVRITPQ-RHAILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESG 70 (145)
T ss_dssp HHHTTCCCCHH-HHHHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTT
T ss_pred HHHcCCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCC
Confidence 34444443332 22333333334444555555555555444333333333333444443
No 288
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=44.22 E-value=98 Score=25.29 Aligned_cols=22 Identities=14% Similarity=-0.096 Sum_probs=10.6
Q ss_pred HHhcCCCHHHHHHHHHHHHhCC
Q 038190 288 SLCKDVLVDKAKELFLDMKSRG 309 (531)
Q Consensus 288 ~~~~~~~~~~a~~~~~~~~~~~ 309 (531)
..+..|+.+.+..+++.+.+.|
T Consensus 160 ~A~~~~~~~~~~~i~~~Ll~~g 181 (232)
T 2rfa_A 160 ILILQPNKTFACQMYNLLLSYD 181 (232)
T ss_dssp HHHTCSCHHHHHHHHHHHHHTT
T ss_pred HHHHcCChHHHHHHHHHHHhcC
Confidence 3344455555544555555444
No 289
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=43.88 E-value=82 Score=22.13 Aligned_cols=52 Identities=13% Similarity=0.061 Sum_probs=36.9
Q ss_pred HHHHHHHcCCChHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 038190 411 CLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDME 468 (531)
Q Consensus 411 ~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 468 (531)
+-+..+...|+|++|..+.+.+- .||...|.+|- -.+.|-.+++..-+..+.
T Consensus 44 IR~sSLmNrG~Yq~Al~l~~~~c----~pdlepw~ALc--e~rlGl~s~le~rL~~la 95 (115)
T 2uwj_G 44 IRISSLANQGRYQEALAFAHGNP----WPALEPWFALC--EWHLGLGAALDRRLAGLG 95 (115)
T ss_dssp HHHHHHHHTTCHHHHHGGGTTCC----CGGGHHHHHHH--HHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHcchhHHHHHHhcCCCC----CchHHHHHHHH--HHhcccHHHHHHHHHHHH
Confidence 34456788999999998876654 78888887764 457788777766554443
No 290
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=43.23 E-value=99 Score=22.90 Aligned_cols=64 Identities=16% Similarity=0.232 Sum_probs=31.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC--HHHHHHHHHHHHhCCCCC
Q 038190 318 SSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEK--VEEALSLYGEMISMGVRP 382 (531)
Q Consensus 318 ~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~~~--~~~a~~~~~~~~~~~~~~ 382 (531)
..++.-|...|+.++|.+.++++...... ...+...+..++-+.++ .+.+..++..+...|+.+
T Consensus 11 ~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~-~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is 76 (129)
T 2nsz_A 11 DMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTIT 76 (129)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHTCGGGH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSC
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhCCCccH-HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcC
Confidence 44555666667777776666665421110 12233334444444332 345556666666555443
No 291
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=43.03 E-value=1.4e+02 Score=24.49 Aligned_cols=32 Identities=16% Similarity=0.243 Sum_probs=25.9
Q ss_pred HHHHHHhccCChhHHHhhHHHhhhcchhhhhc
Q 038190 498 ILEELLNKDENCHECMNLLPSFLSRNQEESKL 529 (531)
Q Consensus 498 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 529 (531)
..+-+|.+.|.+++|.+++++....+..+.++
T Consensus 119 qAV~VCiek~~f~kA~eiLkr~~~~~~s~~kL 150 (235)
T 3bu8_A 119 AAVIICIKNKEFEKASKILKKHMSKDPTTQKL 150 (235)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHSTTCGGGHHH
T ss_pred HHHHHHHHhcchHHHHHHHHHHhcCCCCchHH
Confidence 45667889999999999999998887665543
No 292
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=42.70 E-value=1.3e+02 Score=24.93 Aligned_cols=60 Identities=13% Similarity=0.071 Sum_probs=45.1
Q ss_pred HHHHHHHHHhhhCCCCCc-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH----HhhHHHHHHHHH
Q 038190 423 RSAWELFKKLPRYGPEPN-VVTYTVMICGLCIEGGIEKAYDLLPDMEEK----IRECLKAIELLH 482 (531)
Q Consensus 423 ~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----i~~~~~a~~~~~ 482 (531)
+.+.++|..|...|+--. +..|......+...|++.+|.++|+.-++. +.+..++..-|.
T Consensus 131 ~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~~rL~~~~~~F~ 195 (223)
T 4aez_C 131 DEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKPFLRFQQKYQQFT 195 (223)
T ss_dssp SCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBSHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHHHHHHHHHHHH
Confidence 577899999988776544 667888888899999999999999877666 444454444444
No 293
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=42.28 E-value=1.1e+02 Score=23.39 Aligned_cols=50 Identities=14% Similarity=0.126 Sum_probs=24.7
Q ss_pred HHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 038190 298 AKELFLDMKSRGIIPD-VVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIP 347 (531)
Q Consensus 298 a~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p 347 (531)
+.++|..|..+|+.-. ...|......+...|++.+|.++|+.-++.+-.|
T Consensus 84 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 134 (152)
T 4a1g_A 84 LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEP 134 (152)
T ss_dssp HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 4555555555544322 3334444445555555555555555555544443
No 294
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=42.07 E-value=2.2e+02 Score=26.61 Aligned_cols=22 Identities=9% Similarity=0.083 Sum_probs=15.0
Q ss_pred hcCChHHHHHHHHHHHHcCCCC
Q 038190 169 MQGKFTEASGLFTKFVAFDCRP 190 (531)
Q Consensus 169 ~~g~~~~a~~~~~~~~~~~~~~ 190 (531)
+.++.+.|+..+.+|...|.+|
T Consensus 267 rgsd~daAl~~la~ml~~Gedp 288 (447)
T 3pvs_A 267 RGSAPDAALYWYARIITAGGDP 288 (447)
T ss_dssp HTTCHHHHHHHHHHHHHTTCCH
T ss_pred hCCCHHHHHHHHHHHHHcCCCH
Confidence 3467777777777777766554
No 295
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=41.90 E-value=43 Score=23.34 Aligned_cols=34 Identities=18% Similarity=0.067 Sum_probs=15.9
Q ss_pred CHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCcc
Q 038190 102 YYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVS 139 (531)
Q Consensus 102 ~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~ 139 (531)
..++|.++++.+...| +.+|..++.++...|+..
T Consensus 52 ~~~~ar~Lld~L~~rG----~~Af~~F~~aL~et~~~~ 85 (97)
T 3ygs_P 52 RRDQARQLIIDLETRG----SQALPLFISCLEDTGQDM 85 (97)
T ss_dssp HHHHHHHHHHHHTTSC----TTHHHHHHHHHHTTTCHH
T ss_pred hHHHHHHHHHHHHHcC----hHHHHHHHHHHHHcCcHH
Confidence 4455555555555443 224444555554444433
No 296
>2yru_A Steroid receptor RNA activator 1; SRAP, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=41.30 E-value=1e+02 Score=22.47 Aligned_cols=43 Identities=14% Similarity=0.146 Sum_probs=29.2
Q ss_pred HHHHHHhCCCCCCccccCCHhhHHHHHHHHhcCCCHHHHHHHHHHHHhC
Q 038190 260 LHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSR 308 (531)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 308 (531)
+|+.+.... +.+++...-.-+..+...++++.|..++..+...
T Consensus 48 LfdkLn~~~------Ls~~v~~~L~~l~~al~~~dy~~A~~ih~~l~t~ 90 (118)
T 2yru_A 48 LREQWAGGK------LSIPVKKRMALLVQELLHHQWDAADDIHRSLMVD 90 (118)
T ss_dssp HHHHHHHTC------SCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHS
T ss_pred HHHHHhcCC------CCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Confidence 666666665 5555544444455566788999999998887764
No 297
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=40.59 E-value=1.1e+02 Score=22.76 Aligned_cols=58 Identities=10% Similarity=0.004 Sum_probs=23.8
Q ss_pred HHhCCCCCCHhhHHHHHHHHHccC-CcchHHHHHHHHHHCCCCCChhhHHHHHHHHHhcC
Q 038190 113 LNTIGLLPDFVSLNILMNCFCKMI-GVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQG 171 (531)
Q Consensus 113 m~~~g~~~~~~~~~~li~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 171 (531)
+.+.|++++.. -..++..+...+ ..-.|.++++.+.+.++..+..|.---+..+...|
T Consensus 9 l~~~g~r~T~q-R~~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 67 (136)
T 1mzb_A 9 LRKAGLKVTLP-RVKILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAG 67 (136)
T ss_dssp HHHTTCCCCHH-HHHHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHT
T ss_pred HHHCCCCCCHH-HHHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCC
Confidence 33444443332 223333444433 44555555555555544434333333333343333
No 298
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=39.64 E-value=1.1e+02 Score=23.40 Aligned_cols=62 Identities=15% Similarity=0.093 Sum_probs=38.7
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC
Q 038190 302 FLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEK 364 (531)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~~~ 364 (531)
.+.+.+.|++++.. -..++..+...+..-.|.++++.+.+.+...+..|..-.+..+...|-
T Consensus 15 ~~~l~~~g~r~T~q-R~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 76 (150)
T 2xig_A 15 RMSIKKNGLKNSKQ-REEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKENF 76 (150)
T ss_dssp HHHHHHCC--CHHH-HHHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTS
T ss_pred HHHHHHcCCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCc
Confidence 34466777775543 344555666666778888999998887766666665555555555543
No 299
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=39.13 E-value=1.3e+02 Score=22.98 Aligned_cols=45 Identities=7% Similarity=-0.076 Sum_probs=19.8
Q ss_pred HHHHHHHccCCcchHHHHHHHHHHCCCCCChhhHHHHHHHHHhcC
Q 038190 127 ILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQG 171 (531)
Q Consensus 127 ~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 171 (531)
.++..+...+..-.|.++++.+.+.++..+..|.--.+..+...|
T Consensus 31 ~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 75 (150)
T 2xig_A 31 EVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKEN 75 (150)
T ss_dssp HHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 334444444445555555555555443333333333333444444
No 300
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=38.78 E-value=1.3e+02 Score=22.94 Aligned_cols=58 Identities=10% Similarity=-0.006 Sum_probs=27.0
Q ss_pred HHhCCCCCCHhhHHHHHHHHHccC-CcchHHHHHHHHHHCCCCCChhhHHHHHHHHHhcC
Q 038190 113 LNTIGLLPDFVSLNILMNCFCKMI-GVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQG 171 (531)
Q Consensus 113 m~~~g~~~~~~~~~~li~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 171 (531)
|.+.|++++.. -..++..+...+ ..-.|.++++.+.+.++..+..|.---+..+...|
T Consensus 8 l~~~g~r~T~q-R~~Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 66 (150)
T 2w57_A 8 LKDAGLKVTLP-RLKILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAG 66 (150)
T ss_dssp HHHTTCCCCHH-HHHHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTT
T ss_pred HHHcCCCCCHH-HHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCC
Confidence 44455444432 223344444444 45556666666655544444443333344444444
No 301
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=38.72 E-value=1e+02 Score=23.28 Aligned_cols=57 Identities=12% Similarity=0.049 Sum_probs=24.3
Q ss_pred HHhCCCCCCHhhHHHHHHHHHccCCcchHHHHHHHHHHCCCCCChhhHHHHHHHHHhcC
Q 038190 113 LNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQG 171 (531)
Q Consensus 113 m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 171 (531)
+.+.|++++.. -..++..+...+ .-.|.++++.+.+.++..+..|.---+..+...|
T Consensus 10 L~~~g~r~T~q-R~~Il~~l~~~~-h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 66 (145)
T 3eyy_A 10 LRQRGYRLTPQ-RQLVLEAVDTLE-HATPDDILGEVRKTASGINISTVYRTLELLEELG 66 (145)
T ss_dssp HHTTTCCCCHH-HHHHHHHHHHHS-SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHT
T ss_pred HHHcCCCcCHH-HHHHHHHHHhcC-CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCC
Confidence 34445444332 223333333334 4455555655555544444333322333344433
No 302
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=38.64 E-value=1.4e+02 Score=23.29 Aligned_cols=69 Identities=14% Similarity=0.157 Sum_probs=45.3
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 038190 311 IPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIP-DTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRP 382 (531)
Q Consensus 311 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~ 382 (531)
.-|..-....|...-.+++ ...+|..|...|+-. -...|......+...|++.+|.++|..-++.+-.|
T Consensus 60 knD~RyLklWl~ya~~~~~---p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P 129 (164)
T 2wvi_A 60 YSDPRFLNLWLKLGRLCNE---PLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEP 129 (164)
T ss_dssp TTCHHHHHHHHHHHHHCSC---HHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred ccCHHHHHHHHHHHHhcCC---HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc
Confidence 4455544444433223333 666788888776543 34556677777788888888888888888877666
No 303
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=37.98 E-value=1.6e+02 Score=27.03 Aligned_cols=80 Identities=10% Similarity=-0.014 Sum_probs=36.8
Q ss_pred HHHHHHccCCHHHHHHHHHHHHhCCCCCCH---hhHHHHHHHHHccCCcchHHHHHHHHHHCCCCCChh--hHHHHHHHH
Q 038190 93 LLGALAGKKYYVNFICLSERLNTIGLLPDF---VSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVV--TLGCLIRGL 167 (531)
Q Consensus 93 li~~~~~~~~~~~a~~~~~~m~~~g~~~~~---~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~--~~~~li~~~ 167 (531)
.+...+..|+.+-+.-+++ .|..++. .-. +.+...+..|+.+-+..++ +.|..++.. .-.+.+...
T Consensus 50 ~L~~A~~~g~~~~v~~Ll~----~g~~~~~~~~~g~-t~L~~A~~~g~~~~v~~Ll----~~ga~~~~~~~~g~t~L~~A 120 (437)
T 1n11_A 50 PLHMAARAGHTEVAKYLLQ----NKAKVNAKAKDDQ-TPLHCAARIGHTNMVKLLL----ENNANPNLATTAGHTPLHIA 120 (437)
T ss_dssp HHHHHHHHTCHHHHHHHHH----HTCCSSCCCTTSC-CHHHHHHHHTCHHHHHHHH----HHTCCTTCCCTTCCCHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHh----CCCCCCCCCCCCC-CHHHHHHHCCCHHHHHHHH----hCCCCCCCCCCCCCcHHHHH
Confidence 3444556677655544443 3433322 112 2334444556665544444 334443322 111234445
Q ss_pred HhcCChHHHHHHHH
Q 038190 168 CMQGKFTEASGLFT 181 (531)
Q Consensus 168 ~~~g~~~~a~~~~~ 181 (531)
+..|+.+.+..+++
T Consensus 121 ~~~g~~~~v~~Ll~ 134 (437)
T 1n11_A 121 AREGHVETVLALLE 134 (437)
T ss_dssp HHHTCHHHHHHHHH
T ss_pred HHcCCHHHHHHHHh
Confidence 56677665554443
No 304
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=36.81 E-value=1.5e+02 Score=24.83 Aligned_cols=42 Identities=17% Similarity=0.173 Sum_probs=24.4
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 038190 297 KAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIE 341 (531)
Q Consensus 297 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 341 (531)
-+..+.+.+. . .++.......+..+.+.|+.++|.++|=+..
T Consensus 77 L~~~L~~~l~-~--~~~~~~~r~~v~~L~rLg~~~~A~~lfL~~r 118 (235)
T 2d2s_A 77 ISSKLSQSIL-S--SNEIVHLKSGTENMIKLGLPEQALDLFLQNR 118 (235)
T ss_dssp HHHHHHHHHH-T--CSSHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHH-h--cCCHHHHHHHHHHHHHCCChhHHHHHHHHHH
Confidence 3444444442 2 3345555566667777777777777775543
No 305
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=36.60 E-value=62 Score=25.19 Aligned_cols=58 Identities=10% Similarity=-0.074 Sum_probs=26.2
Q ss_pred HhCCCCCCHhhHHHHHHHHHccCCcchHHHHHHHHHHC--CCCCChhhHHHHHHHHHhcCC
Q 038190 114 NTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRK--VFSPDVVTLGCLIRGLCMQGK 172 (531)
Q Consensus 114 ~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~~~~~li~~~~~~g~ 172 (531)
.+.|++.+. .-..++..+...+..-.|.++++.+.+. ++..+..|.---+..+...|-
T Consensus 25 ~~~g~r~T~-qR~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Gl 84 (162)
T 4ets_A 25 RQGGLKYTK-QREVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEM 84 (162)
T ss_dssp HHHTCCCCH-HHHHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTS
T ss_pred HHcCCCCCH-HHHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCC
Confidence 334444432 2333444444444555555555555544 444443333333444555553
No 306
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=36.43 E-value=1.6e+02 Score=23.25 Aligned_cols=29 Identities=10% Similarity=-0.009 Sum_probs=22.3
Q ss_pred HHhHHHHHHHHHhcCChhHHHHHHHHHhh
Q 038190 196 VICYASIIDGLCKDGFVNKVRVLFLDMKG 224 (531)
Q Consensus 196 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 224 (531)
...|+.+...+...|+.++|+..|..--.
T Consensus 114 EfFy~l~a~lltq~g~r~EaI~y~~~Sf~ 142 (242)
T 3kae_A 114 EFFESLLGDLCTLSGYREEGIGHYVRSFG 142 (242)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHhhhHhhhhcC
Confidence 44677778888889999999988866543
No 307
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=36.29 E-value=1.1e+02 Score=21.51 Aligned_cols=51 Identities=16% Similarity=0.042 Sum_probs=36.6
Q ss_pred HHHHHHHcCCChHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 038190 411 CLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDM 467 (531)
Q Consensus 411 ~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 467 (531)
+-+..+...|+|++|..+.+.+- .||...|.+|- -.+.|-.+++..-+..+
T Consensus 45 IR~sSLmNrG~Yq~Al~l~~~~c----~pdlepw~ALc--e~rlGl~s~le~rL~~l 95 (116)
T 2p58_C 45 IRLSSLMNRGDYASALQQGNKLA----YPDLEPWLALC--EYRLGLGSALESRLNRL 95 (116)
T ss_dssp HHHHHHHHTTCHHHHHHHHTTSC----CGGGHHHHHHH--HHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHcchhHHHHHHhcCCCC----CchHHHHHHHH--HHhcccHHHHHHHHHHH
Confidence 34456788999999999887665 68988887764 44677777765555433
No 308
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=35.89 E-value=33 Score=28.96 Aligned_cols=22 Identities=9% Similarity=-0.019 Sum_probs=13.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHHh
Q 038190 321 IDGYCLMGRIDDARKLFVSIES 342 (531)
Q Consensus 321 l~~~~~~g~~~~a~~~~~~~~~ 342 (531)
+...++.|+.+-+..++++-..
T Consensus 229 L~~A~~~g~~~~v~~Ll~~g~~ 250 (260)
T 3jxi_A 229 LMMAAKTGKIGIFQHIIRREIA 250 (260)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHhCCC
Confidence 3344566777766666665443
No 309
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=35.44 E-value=95 Score=23.49 Aligned_cols=62 Identities=8% Similarity=-0.163 Sum_probs=45.3
Q ss_pred HHHHcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCcc
Q 038190 77 YMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVS 139 (531)
Q Consensus 77 ~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~ 139 (531)
.+.+.|.+.+. .-..++..+...+..-.|.++++.+.+.+...+..|....+..+.+.|-+.
T Consensus 12 ~l~~~g~r~T~-qR~~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~ 73 (145)
T 2fe3_A 12 TLKETGVRITP-QRHAILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGLVK 73 (145)
T ss_dssp HHHHTTCCCCH-HHHHHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHcCCCCCH-HHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCCEE
Confidence 35556766544 345566677667778889999999988876777888878888888777554
No 310
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=34.50 E-value=1.6e+02 Score=22.83 Aligned_cols=52 Identities=10% Similarity=0.084 Sum_probs=35.8
Q ss_pred hcCCHHHHHHHHHHHHhcCCCC--CHHHHHHHHH-H-----HHhcCCHHHHHHHHHHHHh
Q 038190 326 LMGRIDDARKLFVSIESEGCIP--DTSSYNTLIN-S-----YSKIEKVEEALSLYGEMIS 377 (531)
Q Consensus 326 ~~g~~~~a~~~~~~~~~~g~~p--~~~~~~~li~-~-----~~~~~~~~~a~~~~~~~~~ 377 (531)
..|++-+|.++|+.+-.....+ ....|..||. . ..+.|+...|..++.+...
T Consensus 44 n~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 44 NSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp HTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred hCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3488888888888876654444 4556666666 2 2457888888888887754
No 311
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=34.35 E-value=1.8e+02 Score=23.41 Aligned_cols=19 Identities=21% Similarity=0.027 Sum_probs=9.4
Q ss_pred CCcchHHHHHHHHHHCCCC
Q 038190 136 IGVSDAFVALGRILRKVFS 154 (531)
Q Consensus 136 g~~~~a~~~~~~~~~~~~~ 154 (531)
.+.+.|+.++-+|++.|-.
T Consensus 21 SDpDAAly~LaRMl~~GED 39 (201)
T 3bge_A 21 SAPDAALYWYARILTAGGD 39 (201)
T ss_dssp TCHHHHHHHHHHHHHTTCC
T ss_pred CCHHHHHHHHHHHHHcCCC
Confidence 4455555555555554433
No 312
>2b7e_A PRE-mRNA processing protein PRP40; structural protein; NMR {Saccharomyces cerevisiae} SCOP: a.159.2.1
Probab=34.35 E-value=41 Score=20.88 Aligned_cols=29 Identities=21% Similarity=0.148 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHcCCCCChhhHHHHHHHH
Q 038190 69 NDALCFFNYMIHMQPTPFMPSFNSLLGAL 97 (531)
Q Consensus 69 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~ 97 (531)
++|...|-+|++..-.++.-+|...|+.+
T Consensus 3 eEae~aF~~lL~~~~V~s~wsweqamr~i 31 (59)
T 2b7e_A 3 MEAEKEFITMLKENQVDSTWSFSRIISEL 31 (59)
T ss_dssp THHHHHHHHHHHHTTCCSSCCHHHHHHHH
T ss_pred hHHHHHHHHHHHHcCCCCCCcHHHHHHHh
Confidence 56666676666655444556677777666
No 313
>3qil_A Clathrin heavy chain 1; clathrin trimerization domain, endocytosis, structural prote; 3.92A {Bos taurus}
Probab=34.28 E-value=17 Score=26.43 Aligned_cols=50 Identities=12% Similarity=0.012 Sum_probs=27.1
Q ss_pred hHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 038190 281 SYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDA 333 (531)
Q Consensus 281 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a 333 (531)
.|--.|...+..++.+-|.++++...+.| +...|.+++..|-..=+++-+
T Consensus 34 LykDAietAa~S~d~elaEeLL~yFVe~g---~kEcF~A~LytCYdLlrpDvV 83 (125)
T 3qil_A 34 LYKDAMQYASESKDTELAEELLQWFLQEE---KRECFGACLFTCYDLLRPDVV 83 (125)
T ss_dssp CSSHHHHTTTSSCCSHHHHHHHHHHTTSC---SHHHHHHHHHHHTTCSCTTHH
T ss_pred cHHHHHHHHHHcCCHHHHHHHHHHHHHcC---chHHHHHHHHHHHhccChHHH
Confidence 44445555556666666666666666554 445555555555444444443
No 314
>2cos_A Serine/threonine protein kinase LATS2; UBA domain, structure genomics, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=34.09 E-value=35 Score=20.55 Aligned_cols=39 Identities=5% Similarity=0.215 Sum_probs=27.0
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHhccCC--hhHHHhhHHHhhhc
Q 038190 479 ELLHKMAKRYVKPDEITVSILEELLNKDEN--CHECMNLLPSFLSR 522 (531)
Q Consensus 479 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~~a~~~~~~~~~~ 522 (531)
+.++.+++.|+.++ ....++.+.|+ ++.|++.+.+|...
T Consensus 11 qmlq~L~eMGFd~e-----rae~Alk~Tg~~Gle~AmewL~k~~~~ 51 (54)
T 2cos_A 11 QMLQELVNAGCDQE-----MAGRALKQTGSRSIEAALEYISKMSGP 51 (54)
T ss_dssp HHHHHHHHHHCCHH-----HHHHHHHHHTSCCHHHHHHHHHHHSCS
T ss_pred HHHHHHHHcCCCHH-----HHHHHHHHhCcccHHHHHHHHHHhcCC
Confidence 33555666687754 34556667776 99999999998653
No 315
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=33.32 E-value=98 Score=23.09 Aligned_cols=61 Identities=10% Similarity=-0.044 Sum_probs=44.2
Q ss_pred HHHcCCCCChhhHHHHHHHHHccC-CHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCcc
Q 038190 78 MIHMQPTPFMPSFNSLLGALAGKK-YYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVS 139 (531)
Q Consensus 78 ~~~~~~~~~~~~~~~li~~~~~~~-~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~ 139 (531)
+.+.|.+++. .-..++..+...+ ..-.|.++++.+.+.+...+..|....++.+.+.|-..
T Consensus 9 l~~~g~r~T~-qR~~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~ 70 (136)
T 1mzb_A 9 LRKAGLKVTL-PRVKILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAGLVV 70 (136)
T ss_dssp HHHTTCCCCH-HHHHHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSEE
T ss_pred HHHCCCCCCH-HHHHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCcEE
Confidence 4556666544 3455667777666 78889999999998887778888878888888777554
No 316
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=32.28 E-value=1.8e+02 Score=22.61 Aligned_cols=61 Identities=8% Similarity=-0.168 Sum_probs=42.3
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHhhhCCCCC--cHHHHHHHHH-H-----HHHcCCHHHHHHHHHHHHHH
Q 038190 409 FNCLVDGLCKSWRLRSAWELFKKLPRYGPEP--NVVTYTVMIC-G-----LCIEGGIEKAYDLLPDMEEK 470 (531)
Q Consensus 409 ~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p--~~~~~~~l~~-~-----~~~~g~~~~A~~~~~~~~~~ 470 (531)
|..-+..| ..|++-+|.++|+..=...-.+ ....|..||+ . ..+.|+...|..++.+....
T Consensus 36 ~~~~i~lF-n~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~~ 104 (161)
T 2ijq_A 36 VVHGVRLY-NSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQY 104 (161)
T ss_dssp HHHHHHHH-HTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHH-hCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 33334334 4599999999999986543345 5567777777 2 23579999999888766554
No 317
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=32.21 E-value=1.9e+02 Score=23.06 Aligned_cols=142 Identities=11% Similarity=-0.114 Sum_probs=85.0
Q ss_pred CChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCcchHHHHHHHHHHCCCCCChhhHHHHH
Q 038190 85 PFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLI 164 (531)
Q Consensus 85 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li 164 (531)
++...-...+..+.+.++. .+...+..+.. .++...-...+.++.+.++.+. ...+..+.+ .++..+-...+
T Consensus 31 ~~~~vR~~A~~~L~~~~~~-~~~~~L~~~l~---~~~~~vr~~a~~aL~~~~~~~~-~~~L~~~l~---~~~~~vr~~a~ 102 (211)
T 3ltm_A 31 DSYYVRRAAAYALGKIGDE-RAVEPLIKALK---DEDAWVRRAAADALGQIGDERA-VEPLIKALK---DEDGWVRQSAA 102 (211)
T ss_dssp SSHHHHHHHHHHHHHHCCG-GGHHHHHHHTT---CSCHHHHHHHHHHHHHHCCGGG-HHHHHHHTT---CSSHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCc-cHHHHHHHHHc---CCCHHHHHHHHHHHHhhCCHHH-HHHHHHHHc---CCCHHHHHHHH
Confidence 4555555566666666663 33444444443 3467777777778877776543 344444443 35777778888
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCCCCCcHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhc
Q 038190 165 RGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCA 244 (531)
Q Consensus 165 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 244 (531)
.++.+.++.+ +...+..+.. + ++..+-...+.++.+.++.+ +...+..+.. .++..+-...+.++.+.
T Consensus 103 ~aL~~~~~~~-~~~~L~~~l~---d----~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~~aL~~~ 170 (211)
T 3ltm_A 103 VALGQIGDER-AVEPLIKALK---D----EDWFVRIAAAFALGEIGDER-AVEPLIKALK---DEDGWVRQSAADALGEI 170 (211)
T ss_dssp HHHHHHCCGG-GHHHHHHHTT---C----SSHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHHHHHHH
T ss_pred HHHHHhCcHH-HHHHHHHHHh---C----CCHHHHHHHHHHHHHcCCHH-HHHHHHHHHc---CCCHHHHHHHHHHHHHh
Confidence 8888888754 4444444443 2 36666667777777777754 4444545543 24666666666666666
Q ss_pred CC
Q 038190 245 VN 246 (531)
Q Consensus 245 ~~ 246 (531)
+.
T Consensus 171 ~~ 172 (211)
T 3ltm_A 171 GG 172 (211)
T ss_dssp CS
T ss_pred Cc
Confidence 54
No 318
>2f6m_A Suppressor protein STP22 of temperature-sensitive factor receptor and arginine permease...; endosomes, trafficking complex, vacuole protei sorting, ESCRT protein complexes; HET: DDQ; 2.10A {Saccharomyces cerevisiae} SCOP: a.2.17.1 PDB: 2f66_A*
Probab=31.34 E-value=77 Score=20.11 Aligned_cols=45 Identities=13% Similarity=0.050 Sum_probs=26.4
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHc
Q 038190 89 SFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCK 134 (531)
Q Consensus 89 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~ 134 (531)
.++.++..++...-.++++..+.++.+.| ..+..+|..-.+.+++
T Consensus 4 l~~Qll~l~Aed~AieDaiy~L~~aL~~g-~I~l~~ylK~vR~LaR 48 (65)
T 2f6m_A 4 GLNQLYNLVAQDYALTDTIEALSRMLHRG-TIPLDTFVKQGRELAR 48 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHT-SSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence 34555666666666666666666666666 4455555555555444
No 319
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=30.87 E-value=1.8e+02 Score=22.27 Aligned_cols=64 Identities=16% Similarity=0.272 Sum_probs=36.2
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCCCcHHhHHHHHHHHHhcCC--hhHHHHHHHHHhhCCCC
Q 038190 160 LGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGF--VNKVRVLFLDMKGRGIY 228 (531)
Q Consensus 160 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~a~~~~~~m~~~g~~ 228 (531)
.+.++.-|...|+.++|...++++.. |. .....+...+..++-+.++ .+.+..++..+...|+-
T Consensus 12 i~~lL~EY~~~~D~~EA~~cl~EL~~----p~-f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~i 77 (152)
T 2ion_A 12 IDMLLKEYLLSGDISEAEHCLKELEV----PH-FHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTI 77 (152)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTC----GG-GHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhCC----Cc-chHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCc
Confidence 34567777777888888888877742 10 0123344444445554322 34566666666665544
No 320
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=30.22 E-value=2.2e+02 Score=23.17 Aligned_cols=96 Identities=13% Similarity=0.070 Sum_probs=0.0
Q ss_pred HHHHHHhc---CChHHHHHHHHHHHHcCCCCCCCCcHHhHHHHHHHHHhcCC-----hhHHHHHHHHHhhCCCCCCHhhH
Q 038190 163 LIRGLCMQ---GKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGF-----VNKVRVLFLDMKGRGIYPDAFVY 234 (531)
Q Consensus 163 li~~~~~~---g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-----~~~a~~~~~~m~~~g~~p~~~~~ 234 (531)
+|+++.++ .|++.|+-.+-+|++.|.+| .-..-..++-+.-..|. ...|...++.....|.+--....
T Consensus 38 ~ISAf~KSiRGSDpDAALywLaRMl~~GEDp----~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~PE~~i~L 113 (213)
T 3ctd_A 38 VISAFIKSIRGSDPDATLYWLANMVEAGEDP----NFIFRRLLISACEDIGLADPNAIVVVQSCCDAFDRVGFPEGLFFL 113 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTTCCH----HHHHHHHHHHHHHTTGGGSTTHHHHHHHHHHHHHHHCTTTTHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCH----HHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCCCHHHHHH
Q ss_pred HHHHHHHHhcCChhhhhcchHHHHHHHHH
Q 038190 235 NSLIRVYCCAVNWEDAKGNTSAALELHEE 263 (531)
Q Consensus 235 ~~li~~~~~~~~~~~a~~~~~~a~~~~~~ 263 (531)
...+--++.+-+-..+ ..+..|++..+.
T Consensus 114 aqaviyLA~APKSNs~-~A~~~A~~~v~~ 141 (213)
T 3ctd_A 114 SQASLYLAISPKSNST-KSIFKAMEAIKA 141 (213)
T ss_dssp HHHHHHHHHSCCCCGG-GHHHHHHHHHC-
T ss_pred HHHHHHHHcCCccHHH-HHHHHHHHHHHh
No 321
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=30.08 E-value=2.8e+02 Score=24.28 Aligned_cols=66 Identities=17% Similarity=0.211 Sum_probs=43.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC--HHHHHHHHHHHHhCCCCCC
Q 038190 317 YSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEK--VEEALSLYGEMISMGVRPD 383 (531)
Q Consensus 317 ~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~~~--~~~a~~~~~~~~~~~~~~~ 383 (531)
...++.-|...|+.++|.+.++++...... ...+...+..+.-+.++ .+....++..+.+.|+.+.
T Consensus 169 i~~lL~EY~~~~D~~EA~~ci~EL~~p~f~-~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~~ls~ 236 (307)
T 2zu6_B 169 IDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTITV 236 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCGGGH-HHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHCSSCH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCCCcch-HHHHHHHHHHHHccCChHHHHHHHHHHHHHHHCCCCCH
Confidence 466777888899999999999888632111 23344455555555433 4566788888887776654
No 322
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=29.96 E-value=1.1e+02 Score=23.32 Aligned_cols=62 Identities=15% Similarity=0.069 Sum_probs=45.2
Q ss_pred HHHHcCCCCChhhHHHHHHHHHccC-CHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCcc
Q 038190 77 YMIHMQPTPFMPSFNSLLGALAGKK-YYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVS 139 (531)
Q Consensus 77 ~~~~~~~~~~~~~~~~li~~~~~~~-~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~ 139 (531)
.+.+.|.+++.. -..++..+...+ ..-.|.++++.+.+.+...+..|....+..+...|-+.
T Consensus 7 ~l~~~g~r~T~q-R~~Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~ 69 (150)
T 2w57_A 7 ALKDAGLKVTLP-RLKILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGIVT 69 (150)
T ss_dssp HHHHTTCCCCHH-HHHHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHcCCCCCHH-HHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCcEE
Confidence 355567665543 345666676666 77889999999998877778888888888888877654
No 323
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=29.65 E-value=1.6e+02 Score=22.77 Aligned_cols=47 Identities=15% Similarity=0.004 Sum_probs=20.8
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHhC--CCCCCHhhHHHHHHHHHccCCc
Q 038190 92 SLLGALAGKKYYVNFICLSERLNTI--GLLPDFVSLNILMNCFCKMIGV 138 (531)
Q Consensus 92 ~li~~~~~~~~~~~a~~~~~~m~~~--g~~~~~~~~~~li~~~~~~g~~ 138 (531)
.++..+...+..-.|.++++.+.+. +...+..|....+..+.+.|-.
T Consensus 37 ~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Glv 85 (162)
T 4ets_A 37 VLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEMV 85 (162)
T ss_dssp HHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCE
Confidence 3344444444444555555555444 3333444444444444444433
No 324
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=29.64 E-value=3e+02 Score=24.47 Aligned_cols=116 Identities=15% Similarity=-0.009 Sum_probs=57.2
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChhhhhcchHHHHHHHHHHHhCCCCCCccccC
Q 038190 198 CYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHP 277 (531)
Q Consensus 198 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~ 277 (531)
+|.++..=|.+.+++++|++++..-.. .+.+.|....+.+ .+.-+++.+.+.+ +++
T Consensus 37 ~~RTi~~Ry~~~k~y~eAidLL~~GA~---------------~ll~~~Q~~sg~D---L~~llvevy~~~~------~~~ 92 (336)
T 3lpz_A 37 ETRLVAARYSKQGNWAAAVDILASVSQ---------------TLLRSGQGGSGGD---LAVLLVDTFRQAG------QRV 92 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH---------------HHHHTTCHHHHHH---HHHHHHHHHHHHT------CCC
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHHH---------------HHHHCCCcchHHH---HHHHHHHHHHHcC------CCC
Confidence 345555668888888888887654321 1222222222222 1111223333333 455
Q ss_pred CHhhHHHHHHHHhcCCCH--H---HHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 038190 278 DVLSYCSIINSLCKDVLV--D---KAKELFLDMKSRG--IIPDVVVYSSLIDGYCLMGRIDDARKLF 337 (531)
Q Consensus 278 ~~~~~~~ll~~~~~~~~~--~---~a~~~~~~~~~~~--~~~~~~~~~~ll~~~~~~g~~~~a~~~~ 337 (531)
|......++..+.....- . -..+.+.+-.+.| ..-|+.....+...|.+.+++.+|+..|
T Consensus 93 ~~~~~~rL~~L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ 159 (336)
T 3lpz_A 93 DGASRGKLLGCLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHL 159 (336)
T ss_dssp CHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Confidence 555555555555443321 1 1112222222222 2335666667777777777777777766
No 325
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=29.61 E-value=1.2e+02 Score=19.89 Aligned_cols=58 Identities=12% Similarity=0.010 Sum_probs=24.3
Q ss_pred HHhCCCCCCHhhHHHHHHHHHccC-CcchHHHHHHHHHHCCCCCChhhHHHHHHHHHhcC
Q 038190 113 LNTIGLLPDFVSLNILMNCFCKMI-GVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQG 171 (531)
Q Consensus 113 m~~~g~~~~~~~~~~li~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 171 (531)
|.+.|+..+..- ..++..+...+ ..-.+.++++.+.+.++..+..|..-.+..+.+.|
T Consensus 8 l~~~g~~~t~~r-~~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~G 66 (83)
T 2fu4_A 8 LKKAGLKVTLPR-LKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAG 66 (83)
T ss_dssp HHHTTCCCCHHH-HHHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHT
T ss_pred HHHcCCCcCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 344444443322 23334443333 34445555555554443334433333444444433
No 326
>3mkr_B Coatomer subunit alpha; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=28.84 E-value=2.7e+02 Score=24.48 Aligned_cols=78 Identities=13% Similarity=0.156 Sum_probs=0.0
Q ss_pred HHHcCCHHHHHHHHHHHHHH------------------------------------------HhhHHHHHHHHHHHHHcC
Q 038190 451 LCIEGGIEKAYDLLPDMEEK------------------------------------------IRECLKAIELLHKMAKRY 488 (531)
Q Consensus 451 ~~~~g~~~~A~~~~~~~~~~------------------------------------------i~~~~~a~~~~~~~~~~~ 488 (531)
+...|++++|+..|+.+... ..+..+.+++--.+....
T Consensus 112 ~~t~gKf~eAl~~Fr~iL~~i~l~~v~~~~e~~e~~eli~icreYilal~iEl~Rr~l~~~~~~~~kR~lELAAYFT~c~ 191 (320)
T 3mkr_B 112 LTTVGKFEEAVEKFRSILLSVPLLVVDNKQEIAEAQQLITICREYIVGLSMETERKKLPKETLEQQKRICEMAAYFTHSN 191 (320)
T ss_dssp HHHTTCHHHHHHHHHHHHHHGGGCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCSHHHHHHHHHHHHHHTTSC
T ss_pred HHhcCCHHHHHHHHHHHHHHhhheeeccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCchhHHHHHHHHHHhccCC
Q ss_pred CCCCH--HHHHHHHHHHhccCChhHHHhhHHHhhhcchhhhh
Q 038190 489 VKPDE--ITVSILEELLNKDENCHECMNLLPSFLSRNQEESK 528 (531)
Q Consensus 489 ~~~~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 528 (531)
++|.. .++..-+....+.+++.-|-.+.+++...++.++.
T Consensus 192 Lqp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~~~~ 233 (320)
T 3mkr_B 192 LQPVHMILVLRTALNLFFKLKNFRTAAAFARRLLELGPKPEV 233 (320)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTBHHHHHHHHHHHHHTCCCHHH
T ss_pred CcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCHHH
No 327
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=27.92 E-value=1.8e+02 Score=25.89 Aligned_cols=25 Identities=12% Similarity=0.106 Sum_probs=17.7
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHH
Q 038190 160 LGCLIRGLCMQGKFTEASGLFTKFV 184 (531)
Q Consensus 160 ~~~li~~~~~~g~~~~a~~~~~~~~ 184 (531)
...++.-|...|+.++|...++++.
T Consensus 14 ~~~ll~Ey~~~~d~~Ea~~ci~el~ 38 (339)
T 1ug3_A 14 SKAIIEEYLHLNDMKEAVQCVQELA 38 (339)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTC
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHcC
Confidence 3566777777777777777777764
No 328
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=27.39 E-value=1.3e+02 Score=23.77 Aligned_cols=14 Identities=7% Similarity=0.114 Sum_probs=6.1
Q ss_pred HHHHHHHHhCCCCC
Q 038190 299 KELFLDMKSRGIIP 312 (531)
Q Consensus 299 ~~~~~~~~~~~~~~ 312 (531)
.++.+.+.+.|..+
T Consensus 158 ~~~v~~Ll~~ga~~ 171 (201)
T 3hra_A 158 QDIVKLLMENGADQ 171 (201)
T ss_dssp HHHHHHHHHTTCCT
T ss_pred HHHHHHHHHCCCCC
Confidence 34444444444433
No 329
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=27.32 E-value=97 Score=23.46 Aligned_cols=61 Identities=7% Similarity=-0.154 Sum_probs=42.9
Q ss_pred HHHHcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCcc
Q 038190 77 YMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVS 139 (531)
Q Consensus 77 ~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~ 139 (531)
.+.+.|.+++.. -..++..+...+ .-.|.++++.+.+.+...+..|....+..+.+.|-..
T Consensus 9 ~L~~~g~r~T~q-R~~Il~~l~~~~-h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv~ 69 (145)
T 3eyy_A 9 DLRQRGYRLTPQ-RQLVLEAVDTLE-HATPDDILGEVRKTASGINISTVYRTLELLEELGLVS 69 (145)
T ss_dssp HHHTTTCCCCHH-HHHHHHHHHHHS-SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHTSEE
T ss_pred HHHHcCCCcCHH-HHHHHHHHHhcC-CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCCcEE
Confidence 344566665543 345556666666 7789999999998887778888777788888777544
No 330
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=27.04 E-value=77 Score=23.48 Aligned_cols=45 Identities=9% Similarity=-0.025 Sum_probs=22.7
Q ss_pred HHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCC
Q 038190 93 LLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIG 137 (531)
Q Consensus 93 li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~ 137 (531)
++..+...+..-.|.++++.+.+.+...+..|....++.+.+.|-
T Consensus 16 Il~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gl 60 (131)
T 2o03_A 16 ISTLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSGL 60 (131)
T ss_dssp HHHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTTS
T ss_pred HHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCC
Confidence 334444444455555566665555444455555555555555443
No 331
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=26.88 E-value=2.3e+02 Score=22.26 Aligned_cols=171 Identities=6% Similarity=-0.125 Sum_probs=0.0
Q ss_pred HHHHHccCCcchHHHHHHHHHHCCCCCCh-hhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCCCcHHhHHHHHHHHH
Q 038190 129 MNCFCKMIGVSDAFVALGRILRKVFSPDV-VTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLC 207 (531)
Q Consensus 129 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 207 (531)
+...++.|+++. +..+...++.... ..-.+.+...+..|+.+.-.++.+-+++.|..++.......--..+.+..
T Consensus 10 l~~Aa~~g~~~~----~~~l~~~~~~~~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~TpLh~a~~~ 85 (186)
T 3t8k_A 10 VSAAAMLGTYED----FLELFEKGYEDKESVLKSNILYDVLRNNNDEARYKISMFLINKGADIKSRTKEGTTLFFPLFQG 85 (186)
T ss_dssp HHHHHHHSCHHH----HHHHHHHSSSCHHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCSSCCCTTCCCTHHHHHHH
T ss_pred HHHHHHcCCHHH----HHHHHhcCcccccccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHc
Q ss_pred hcCChhHHHHHHHHHhhCCCCCCHhhH----HHHHHHHHhcCChhhhhcchHHHHHHHHHHHh-CCCCCCccccCCHhhH
Q 038190 208 KDGFVNKVRVLFLDMKGRGIYPDAFVY----NSLIRVYCCAVNWEDAKGNTSAALELHEEFVN-GNGELGVICHPDVLSY 282 (531)
Q Consensus 208 ~~~~~~~a~~~~~~m~~~g~~p~~~~~----~~li~~~~~~~~~~~a~~~~~~a~~~~~~~~~-~~~~~~~~~~~~~~~~ 282 (531)
...+.....++.+.+.+.|..++.... +.+..+............ +++.+.. .|.+ +......-
T Consensus 86 ~~~~~~~~~~iv~~Ll~~Gadin~~d~~g~ttpLh~A~~~~~~~~~~~~-------iv~~Ll~~~gad----~~~~d~~G 154 (186)
T 3t8k_A 86 GGNDITGTTELCKIFLEKGADITALYKPYKIVVFKNIFNYFVDENEMIP-------LYKLIFSQSGLQ----LLIKDKWG 154 (186)
T ss_dssp CTTCHHHHHHHHHHHHHTTCCSSSCBGGGTBCTTGGGGGCCSCHHHHHH-------HHHHHHTSTTCC----TTCCCTTS
T ss_pred CCcchhhHHHHHHHHHHCCCCCCccCCCcCchHHHHHHHcCCChhhHHH-------HHHHHHHhcCCC----CcccCCCC
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCH
Q 038190 283 CSIINSLCKDVLVDKAKELFLDMKSRGIIPDV 314 (531)
Q Consensus 283 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 314 (531)
.+-+....+.|..+.+.-+.+.+.+.+++.+.
T Consensus 155 ~TpL~~A~~~~~~~~v~~L~~~~~~~~~~~~~ 186 (186)
T 3t8k_A 155 LTALEFVKRCQKPIALKMMEDYIKKYNLKENS 186 (186)
T ss_dssp CCHHHHHHTTTCHHHHHHHHHHHHHHTCCC--
T ss_pred CCHHHHHHHcCCHHHHHHHHHHHHHHhcccCC
No 332
>1oai_A Nuclear RNA export factor; nuclear transport, nuclear transport factor; 1.0A {Homo sapiens} SCOP: a.5.2.3
Probab=26.77 E-value=54 Score=20.34 Aligned_cols=23 Identities=13% Similarity=-0.029 Sum_probs=15.7
Q ss_pred cCCHHHHHHHHHHHHhCC-CCCCH
Q 038190 100 KKYYVNFICLSERLNTIG-LLPDF 122 (531)
Q Consensus 100 ~~~~~~a~~~~~~m~~~g-~~~~~ 122 (531)
.-|++.|+..|..+...| ++|+.
T Consensus 33 ~Wd~~~A~~~F~~l~~~~~IP~eA 56 (59)
T 1oai_A 33 NWDYTRSAQAFTHLKAKGEIPEVA 56 (59)
T ss_dssp TTCHHHHHHHHHHHHHTTCSCGGG
T ss_pred CCCHHHHHHHHHHHHHcCCCCHHH
Confidence 457888888888887654 44443
No 333
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=26.37 E-value=70 Score=24.05 Aligned_cols=44 Identities=11% Similarity=0.061 Sum_probs=21.1
Q ss_pred HHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccC
Q 038190 93 LLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMI 136 (531)
Q Consensus 93 li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g 136 (531)
++..+...++.-.|.++++.+.+.+...+..|....+..+.+.|
T Consensus 19 Il~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~G 62 (139)
T 3mwm_A 19 VSAALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAG 62 (139)
T ss_dssp HHHHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCC
Confidence 34444444444455555555555544444444444444444444
No 334
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=26.10 E-value=4.1e+02 Score=24.87 Aligned_cols=111 Identities=8% Similarity=-0.019 Sum_probs=71.1
Q ss_pred HHHHHHHHHHHcCCChHHHHHHHHHhhhCCCCCc--------HHHHH-HHHHHHHHcCCHHHHHHHHHHHHHH-H-----
Q 038190 407 TVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPN--------VVTYT-VMICGLCIEGGIEKAYDLLPDMEEK-I----- 471 (531)
Q Consensus 407 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~--------~~~~~-~l~~~~~~~g~~~~A~~~~~~~~~~-i----- 471 (531)
...+.|...|.+.|+...+..+++.+...+..|+ ..+|. -+...+...+++.+|.+.|.+..+. -
T Consensus 177 ~l~n~L~kiYFkl~~~~lckni~k~i~~~~~~p~~~~~p~~q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~lcp~~~~ 256 (455)
T 3t5v_B 177 YLVNKLNNIYFRIESPQLCSNIFKNFQPKSMLAHFNEYQLDQQIEYRYLLGRYYLLNSQVHNAFVQFNEAFQSLLNLPLT 256 (455)
T ss_dssp HHHHHHHHHHHHSSCCTTHHHHHHTHHHHCCCSCGGGSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCCC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHhccCCCCcChhhCCccceEeeeHHHHHHHHHHccHHHHHHHHHHHHHhcCCcccc
Confidence 4568889999999999999999999877655332 33555 3455567899999999988887766 1
Q ss_pred -----hhHHHHHHHHH--HHHHcCCCCCHHHHHH-----H------HHHHhccCChhHHHhhHHH
Q 038190 472 -----RECLKAIELLH--KMAKRYVKPDEITVSI-----L------EELLNKDENCHECMNLLPS 518 (531)
Q Consensus 472 -----~~~~~a~~~~~--~~~~~~~~~~~~~~~~-----l------~~~~~~~g~~~~a~~~~~~ 518 (531)
+.....+.++- .|+ .|.-|+...+.. + +-...+.|++..-.+.+++
T Consensus 257 ~~~~~~n~~~ILkyLIpv~LL-lG~~P~~~ll~k~~~~~L~~~y~~L~~AVr~Gdl~~F~~~L~~ 320 (455)
T 3t5v_B 257 NQAITRNGTRILNYMIPTGLI-LGKMVKWGPLRPFLSQETIDNWSVLYKHVRYGNIQGVSLWLRQ 320 (455)
T ss_dssp CHHHHHHHHHHHHHHHHHHHH-TTCCBCHHHHGGGSCHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred chhhhhHHHHHHHHHHHHHHH-cCCCCCHHHHcccchHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 22233333322 222 355666644322 1 1224467887776666654
No 335
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=25.70 E-value=2.5e+02 Score=22.17 Aligned_cols=112 Identities=12% Similarity=-0.051 Sum_probs=74.6
Q ss_pred HHHHcCCChHHHHHHHHHhhhCCCC--Cc---------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH------
Q 038190 414 DGLCKSWRLRSAWELFKKLPRYGPE--PN---------------VVTYTVMICGLCIEGGIEKAYDLLPDMEEK------ 470 (531)
Q Consensus 414 ~~~~~~g~~~~A~~~~~~~~~~g~~--p~---------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------ 470 (531)
-+|-+..++..|...++.+.+..+. || ...|+.+...|.+.|+.++|+..+..--..
T Consensus 70 LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~~~~lf~~ 149 (242)
T 3kae_A 70 LCYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMFVDPGDEEFFESLLGDLCTLSGYREEGIGHYVRSFGKSFLFSP 149 (242)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccccCcccccccceeeeccchHHHHHHHHHHHHHHhcCHHHhhhHhhhhcCCccccch
Confidence 3567788999999998888853332 21 234667777788899999999888765444
Q ss_pred --------------------------H--hhHHHHHHHHH----HHHH--cCCCCCHHHH--HHHHHHHhccCChhHHHh
Q 038190 471 --------------------------I--RECLKAIELLH----KMAK--RYVKPDEITV--SILEELLNKDENCHECMN 514 (531)
Q Consensus 471 --------------------------i--~~~~~a~~~~~----~~~~--~~~~~~~~~~--~~l~~~~~~~g~~~~a~~ 514 (531)
| ..+.....+.+ +.++ ...-|....| .....-|...|..++...
T Consensus 150 vEnliyeN~vp~~~d~~~i~~~~~~~i~~~y~~d~~~lHe~~s~~~ikkY~n~iPGiGSY~va~aa~~yf~lg~~d~s~~ 229 (242)
T 3kae_A 150 VENLLLENKVPQKRDKENVRQTGRRGIEEEYVSDSIEFHESLSPSLVKKYMEHVPGIGSYFISNAARRYFNLGMNDKSKA 229 (242)
T ss_dssp HHHHHHTTCCCCCC-----------CHHHHHHHHHHHHHHHCCHHHHHHHHTSTTTHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHhhcCCCcccchHHHHhhhhccchhhhhhhHHHHHHhccHHHHHHHHHhCCCchhHHHHHHHHHHHhcccchhHHH
Confidence 0 12233333443 2222 2456776544 446677888999999999
Q ss_pred hHHHhhhcchh
Q 038190 515 LLPSFLSRNQE 525 (531)
Q Consensus 515 ~~~~~~~~~~~ 525 (531)
++..++..++.
T Consensus 230 lf~~lR~kDP~ 240 (242)
T 3kae_A 230 CFELVRRKDPM 240 (242)
T ss_dssp HHHHHHHHSTT
T ss_pred HHHHHHhcCCC
Confidence 99988877653
No 336
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=25.04 E-value=5.8e+02 Score=26.73 Aligned_cols=108 Identities=14% Similarity=0.099 Sum_probs=65.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCc---ccHHHHHHHHHH
Q 038190 320 LIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDN---SCILEAAELFRT 396 (531)
Q Consensus 320 ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~a~~~~~~ 396 (531)
++..+...|.++-|.++...+. -+...--.+..+|...|++++|...|++.- .|+.... ........++..
T Consensus 816 l~~~L~~~~~~~~a~eL~~~~~-----~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA-~gl~~~~~~~~~~~~~~~ll~~ 889 (950)
T 4gq2_M 816 LVEKLFLFKQYNACMQLIGWLN-----SDPIAVYLKALIYLKSKEAVKAVRCFKTTS-LVLYSHTSQFAVLREFQEIAEK 889 (950)
T ss_dssp HHHHHHHTTCHHHHHHHGGGCC-----SSHHHHHHHHHHHHHTTCHHHHHHHHHTCC-CTTCSSCCSCGGGHHHHHHHHH
T ss_pred HHHHHHHhcHHHHHHHHHhhcC-----CChHHHHHHHHHHHHcCCHHHHHHHHHHHh-hhcccCcccccchhhhhhccCc
Confidence 5566777788876655442222 244443467788999999999999998753 2433221 111222222221
Q ss_pred HHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHhhhC
Q 038190 397 LHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRY 435 (531)
Q Consensus 397 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 435 (531)
... ......-|..++..+-+.+-++-+.++.+..++.
T Consensus 890 ~e~--~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~ 926 (950)
T 4gq2_M 890 YHH--QNLLSCYYLHLSKKLFEESAYIDALEFSLLADAS 926 (950)
T ss_dssp TTT--CSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred ccc--cchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Confidence 111 1112335788888888888888888888877763
No 337
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=24.19 E-value=2.2e+02 Score=21.00 Aligned_cols=64 Identities=16% Similarity=0.272 Sum_probs=37.7
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCCCcHHhHHHHHHHHHhcCC--hhHHHHHHHHHhhCCCC
Q 038190 160 LGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGF--VNKVRVLFLDMKGRGIY 228 (531)
Q Consensus 160 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~a~~~~~~m~~~g~~ 228 (531)
...++.-|...|+.++|.+.++++.. |. .....+...+..++-+.++ .+.+..++..+...|+-
T Consensus 10 i~~ll~EY~~~~D~~Ea~~cl~eL~~----p~-f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~i 75 (129)
T 2nsz_A 10 IDMLLKEYLLSGDISEAEHCLKELEV----PH-FHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTI 75 (129)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTC----GG-GHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCC----Cc-cHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCc
Confidence 34567777788888888888888742 10 0123344444555555432 35566777777766544
No 338
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=24.12 E-value=2.4e+02 Score=29.62 Aligned_cols=132 Identities=14% Similarity=0.075 Sum_probs=74.0
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCcchHHHHHHHHHHCCCCCChhhHHHHHHHHHhcC
Q 038190 92 SLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQG 171 (531)
Q Consensus 92 ~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 171 (531)
.++..|...|.++-|.++...+ +-++..--.+.++|...|++++|...|+++- .|+..+......
T Consensus 815 ~l~~~L~~~~~~~~a~eL~~~~-----~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA-~gl~~~~~~~~~--------- 879 (950)
T 4gq2_M 815 ELVEKLFLFKQYNACMQLIGWL-----NSDPIAVYLKALIYLKSKEAVKAVRCFKTTS-LVLYSHTSQFAV--------- 879 (950)
T ss_dssp HHHHHHHHTTCHHHHHHHGGGC-----CSSHHHHHHHHHHHHHTTCHHHHHHHHHTCC-CTTCSSCCSCGG---------
T ss_pred HHHHHHHHhcHHHHHHHHHhhc-----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHh-hhcccCcccccc---------
Confidence 3667777788887776654433 3344444466778889999999999998753 333222111100
Q ss_pred ChHHHHHHHHHHHHcCCCCCCCCcHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCH----hhHHHHHHHHHhcC
Q 038190 172 KFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDA----FVYNSLIRVYCCAV 245 (531)
Q Consensus 172 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~----~~~~~li~~~~~~~ 245 (531)
......++..... .. ....-|..++..+-+.+.++.+.++-+...+.--.-|. ..|+.+.++.+..|
T Consensus 880 -~~~~~~ll~~~e~---~~---~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~l~~~l~~r~f~~a~a~g 950 (950)
T 4gq2_M 880 -LREFQEIAEKYHH---QN---LLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAG 950 (950)
T ss_dssp -GHHHHHHHHHTTT---CS---HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHHHHHHHC
T ss_pred -hhhhhhccCcccc---cc---hhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHhhCC
Confidence 0011111111100 00 12346788888888888888888877776653212122 35666777666554
No 339
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=23.15 E-value=1.6e+02 Score=21.61 Aligned_cols=49 Identities=12% Similarity=-0.016 Sum_probs=34.3
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChh
Q 038190 200 ASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWE 248 (531)
Q Consensus 200 ~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~ 248 (531)
..++..+...+..-.|.++++.+.+.+...+..|....+..+...|-..
T Consensus 14 ~~Il~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv~ 62 (131)
T 2o03_A 14 AAISTLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSGLVD 62 (131)
T ss_dssp HHHHHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTTSEE
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCEE
Confidence 3455556666667788888888887766667777777777777776544
No 340
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=23.03 E-value=1.6e+02 Score=22.00 Aligned_cols=47 Identities=11% Similarity=0.006 Sum_probs=27.9
Q ss_pred HHHHHHHHccCCcchHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCC
Q 038190 126 NILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGK 172 (531)
Q Consensus 126 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 172 (531)
..++..+...+..-.|.++++.+.+.++..+..|.--.+..+...|-
T Consensus 17 ~~Il~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~Gl 63 (139)
T 3mwm_A 17 AAVSAALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAGE 63 (139)
T ss_dssp HHHHHHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCC
Confidence 44555555556666777777777776655555444444555555553
No 341
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=22.62 E-value=3.1e+02 Score=22.19 Aligned_cols=64 Identities=8% Similarity=-0.031 Sum_probs=35.2
Q ss_pred HHHHHHHHH---ccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCC-----cchHHHHHHHHHHCCCC
Q 038190 90 FNSLLGALA---GKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIG-----VSDAFVALGRILRKVFS 154 (531)
Q Consensus 90 ~~~li~~~~---~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~-----~~~a~~~~~~~~~~~~~ 154 (531)
+--+|+++. +..+.+.|+-.+.+|++.| .|.-..-..++-+.-..|. ...|...++.....|.+
T Consensus 14 HYd~iSAf~KSiRGSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~P 85 (204)
T 2r9g_A 14 HYDVISAFQKSIRGSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIGLGNPAAAARTVNAVLAAEKLGLP 85 (204)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTGGGCHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCCC
Confidence 333445543 4467777777777887777 4433333333444444443 23445556666666654
No 342
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=22.06 E-value=1.1e+02 Score=24.55 Aligned_cols=19 Identities=11% Similarity=-0.020 Sum_probs=10.0
Q ss_pred HHHccCCHHHHHHHHHHHH
Q 038190 96 ALAGKKYYVNFICLSERLN 114 (531)
Q Consensus 96 ~~~~~~~~~~a~~~~~~m~ 114 (531)
.|.+.|.+++|.+++++..
T Consensus 126 VCiekg~Fk~A~eiLkr~f 144 (211)
T 3bqo_A 126 VCMENGNFKEAEEVFERIF 144 (211)
T ss_dssp HHHHTTCHHHHHHHHHHHC
T ss_pred HHHHccchHHHHHHHHHHh
Confidence 3455555555555555543
No 343
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=21.93 E-value=1.2e+02 Score=25.31 Aligned_cols=28 Identities=7% Similarity=-0.053 Sum_probs=17.5
Q ss_pred HHHHHhcCChhHHHHHHHHHhhCCCCCC
Q 038190 203 IDGLCKDGFVNKVRVLFLDMKGRGIYPD 230 (531)
Q Consensus 203 ~~~~~~~~~~~~a~~~~~~m~~~g~~p~ 230 (531)
+...++.|+.+....+++.+.+.|..++
T Consensus 9 L~~A~~~g~~~~v~~ll~~l~~~~~~~~ 36 (260)
T 3jxi_A 9 LFDIVSRGSPDGLEGLLSFLLTHKKRLT 36 (260)
T ss_dssp HHHHHHHTCGGGGTTHHHHHHHHTCCTT
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCcc
Confidence 3445566777777777776666555444
No 344
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=21.61 E-value=3.2e+02 Score=22.07 Aligned_cols=66 Identities=11% Similarity=0.043 Sum_probs=42.3
Q ss_pred hHHHHHHHHH---ccCCcchHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCC-----hHHHHHHHHHHHHcCCCC
Q 038190 124 SLNILMNCFC---KMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGK-----FTEASGLFTKFVAFDCRP 190 (531)
Q Consensus 124 ~~~~li~~~~---~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~-----~~~a~~~~~~~~~~~~~~ 190 (531)
.+..+|.++. +-.+.+.|+.++-+|++.| .|.-.....++-+.-.-|. ...|...++.....|...
T Consensus 13 ~HYd~iSAf~KSiRGSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~PE 86 (204)
T 2r9g_A 13 AHYDVISAFQKSIRGSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIGLGNPAAAARTVNAVLAAEKLGLPE 86 (204)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTGGGCHHHHHHHHHHHHHHHHHCTTT
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCCCH
Confidence 3444555554 4478999999999999999 6665555555566655553 234555666666666443
No 345
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=21.45 E-value=41 Score=27.01 Aligned_cols=30 Identities=7% Similarity=0.077 Sum_probs=18.5
Q ss_pred HHHHHHhccCChhHHHhhHHHhhhcchhhh
Q 038190 498 ILEELLNKDENCHECMNLLPSFLSRNQEES 527 (531)
Q Consensus 498 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 527 (531)
..+-+|.+.|.+++|.++++++...+....
T Consensus 122 qAV~VCiekg~Fk~A~eiLkr~f~~~~~~~ 151 (211)
T 3bqo_A 122 QAIAVCMENGNFKEAEEVFERIFGDPNSHM 151 (211)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHC-----CC
T ss_pred HHHHHHHHccchHHHHHHHHHHhcCCCCch
Confidence 355677788888888888888666654443
No 346
>3f3f_C Nucleoporin NUP85; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_C 3f3p_C 3ewe_B
Probab=21.43 E-value=2.7e+02 Score=26.86 Aligned_cols=69 Identities=9% Similarity=-0.058 Sum_probs=23.7
Q ss_pred HHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCCCcHHhHHHHHHHHHhcCChhHH
Q 038190 141 AFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKV 215 (531)
Q Consensus 141 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 215 (531)
.......++.+-+--+..-..-++..|++.|-.+.|.++++.+-..-.. +...+ ..+..|+++|+++.+
T Consensus 500 gr~~IselLpr~Pl~Tndd~e~vL~iCa~l~L~~~ar~I~k~~g~k~l~-----~g~~g-eAL~~f~rA~~~~~V 568 (570)
T 3f3f_C 500 KKMVIAELLPHYPFVTNDDIEWMLSICVEWRLPEIAKEIYTTLGNQMLS-----AHNII-ESIANFSRAGKYELV 568 (570)
T ss_dssp HHHHHHHHGGGCCCCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHC------------------------------
T ss_pred HHHHHHHHhccCCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHH-----CccHH-HHHHHHHHcCChhhc
Confidence 3444444444322223344455566666666666666666665543322 23334 444556666665544
No 347
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=21.40 E-value=81 Score=19.53 Aligned_cols=49 Identities=16% Similarity=-0.004 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC
Q 038190 68 LNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPD 121 (531)
Q Consensus 68 ~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~ 121 (531)
.++++..+..| -|..+...-..++. ...|+.+.|+..+-.|...+..|+
T Consensus 9 ~ee~l~~L~em---FP~ld~~~I~~vL~--a~~gdvd~aI~~LL~m~~~~~~~~ 57 (59)
T 1wgl_A 9 SEEDLKAIQDM---FPNMDQEVIRSVLE--AQRGNKDAAINSLLQMGEEPSGPS 57 (59)
T ss_dssp CHHHHHHHHHH---CSSSCHHHHHHHHT--TTTTCHHHHHHHHHHSSCCCCSCC
T ss_pred CHHHHHHHHHH---CCCCCHHHHHHHHH--HcCCCHHHHHHHHHcCcCCCCCCC
Confidence 34555555444 24444443333333 246788888888888766655554
No 348
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=21.29 E-value=3.2e+02 Score=21.92 Aligned_cols=19 Identities=11% Similarity=-0.220 Sum_probs=11.4
Q ss_pred HHHHHccCCHHHHHHHHHH
Q 038190 94 LGALAGKKYYVNFICLSER 112 (531)
Q Consensus 94 i~~~~~~~~~~~a~~~~~~ 112 (531)
+...++.|+++....+++.
T Consensus 10 l~~A~~~g~~~~v~~ll~~ 28 (231)
T 3aji_A 10 ICNLAYSGKLDELKERILA 28 (231)
T ss_dssp HHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHh
Confidence 4445566777666666654
No 349
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=21.20 E-value=3.3e+02 Score=21.97 Aligned_cols=55 Identities=16% Similarity=-0.005 Sum_probs=27.9
Q ss_pred ccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCC-----cchHHHHHHHHHHCCC
Q 038190 99 GKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIG-----VSDAFVALGRILRKVF 153 (531)
Q Consensus 99 ~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~-----~~~a~~~~~~~~~~~~ 153 (531)
+..+.+.|+-.+.+|++.|-.|.-..-..++-+.-..|. ...|...++.....|.
T Consensus 19 RGSDpDAAly~LaRMl~~GEDp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~ 78 (201)
T 3bge_A 19 RGSAPDAALYWYARILTAGGDPLYVARRLLAIASEDVGNADPRAMQVALAAWDCFTRVGA 78 (201)
T ss_dssp HTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGCTTHHHHHHHHHHHHHHTCH
T ss_pred hCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHCC
Confidence 446677777777777776633333233333333333332 2244455555556664
No 350
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=21.13 E-value=1.1e+02 Score=20.35 Aligned_cols=24 Identities=8% Similarity=0.152 Sum_probs=13.5
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHH
Q 038190 447 MICGLCIEGGIEKAYDLLPDMEEK 470 (531)
Q Consensus 447 l~~~~~~~g~~~~A~~~~~~~~~~ 470 (531)
+.+-|+..|+++.|+.+|+...+.
T Consensus 18 ~ARe~Al~GnYdta~~yY~g~~~q 41 (78)
T 2rpa_A 18 LAREYALLGNYDSAMVYYQGVLDQ 41 (78)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHhcChHHHHHHHHHHHHH
Confidence 344456666666666666554443
No 351
>3f3f_C Nucleoporin NUP85; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_C 3f3p_C 3ewe_B
Probab=20.78 E-value=2.2e+02 Score=27.54 Aligned_cols=87 Identities=9% Similarity=-0.049 Sum_probs=43.5
Q ss_pred hhHHHHHHHHHc--cCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCcchHHHHHHHHHHCCCCCChhhHHHHHH
Q 038190 88 PSFNSLLGALAG--KKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIR 165 (531)
Q Consensus 88 ~~~~~li~~~~~--~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 165 (531)
..|..-|..+.. ..+........+.++.+=.--+..-...++..|.+.|-.+.|..++..+-..-+. +-..+ ..+.
T Consensus 480 sLW~vgI~yL~~~~~~~~~~gr~~IselLpr~Pl~Tndd~e~vL~iCa~l~L~~~ar~I~k~~g~k~l~-~g~~g-eAL~ 557 (570)
T 3f3f_C 480 ELWPVAIGLIALSATGTRSAKKMVIAELLPHYPFVTNDDIEWMLSICVEWRLPEIAKEIYTTLGNQMLS-AHNII-ESIA 557 (570)
T ss_dssp TTHHHHHHHHHHCSSSCHHHHHHHHHHHGGGCCCCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHC---------------
T ss_pred cchhHHHHHHhcCCccchhHHHHHHHHHhccCCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHH-CccHH-HHHH
Confidence 456665655553 3455666677777766533334556778888899999999999998888665443 33455 5566
Q ss_pred HHHhcCChHHH
Q 038190 166 GLCMQGKFTEA 176 (531)
Q Consensus 166 ~~~~~g~~~~a 176 (531)
.|+++|+++.+
T Consensus 558 ~f~rA~~~~~V 568 (570)
T 3f3f_C 558 NFSRAGKYELV 568 (570)
T ss_dssp -----------
T ss_pred HHHHcCChhhc
Confidence 78888887765
No 352
>3e3v_A Regulatory protein RECX; PSI-II, NYSGXRC, structural genomics, protein initiative; 2.04A {Lactobacillus salivarius}
Probab=20.32 E-value=3.2e+02 Score=21.48 Aligned_cols=51 Identities=14% Similarity=0.087 Sum_probs=31.1
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHhhhCCCCCc
Q 038190 389 EAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPN 440 (531)
Q Consensus 389 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~ 440 (531)
....++..+.+.|+--|...-..++....+.|.+. ...+-.++.+.|+.++
T Consensus 51 ~ie~vl~~L~~~g~ldD~rfA~~~vr~~~~~~~~G-~~~I~~eL~~KGI~~~ 101 (177)
T 3e3v_A 51 YISEIINKLIDLDLINDKNYAESYVRTMMNTSDKG-PKVIKLNLSKKGIDDN 101 (177)
T ss_dssp HHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHCCCC-HHHHHHHHHTTTCCHH
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHccccc-HHHHHHHHHHcCCCHH
Confidence 44455555555555546666677777776554432 3566677788888643
No 353
>2h7o_A Protein kinase YPKA; YOPO, GDI, signaling protein; 2.00A {Yersinia pseudotuberculosis} PDB: 2h7v_C*
Probab=20.32 E-value=3.8e+02 Score=22.36 Aligned_cols=86 Identities=8% Similarity=-0.015 Sum_probs=50.4
Q ss_pred CCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH---------------HhhHHHHHHHHHHHH---HcCCCCCHHHH
Q 038190 435 YGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK---------------IRECLKAIELLHKMA---KRYVKPDEITV 496 (531)
Q Consensus 435 ~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---------------i~~~~~a~~~~~~~~---~~~~~~~~~~~ 496 (531)
.|-+|...+|..|-..-...+....++.-++.-+.. .+..++|++-|+... +.|-..+....
T Consensus 153 q~~~~s~evy~~L~~lae~k~~l~~~l~~Lk~~Q~~~~a~~~sl~~~~~sW~~~A~qaLQ~Fds~~P~VkfGs~~~~~~H 232 (303)
T 2h7o_A 153 QGQPVSSETYGFLNRLAEAKITLSQQLNTLQQQQESAKAQLSILINRSGSWADVARQSLQRFDSTRPVVKFGTEQYTAIH 232 (303)
T ss_dssp ---CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTHHHHHHHHHHHHHHCCCCCCCCCGGGHHH
T ss_pred cCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHhhhccCCeeeecchhHHHHH
Confidence 344566666665554444444444444333333222 366777888888775 45666676677
Q ss_pred HHHHHHHhccCChhHHHhhHHHhhh
Q 038190 497 SILEELLNKDENCHECMNLLPSFLS 521 (531)
Q Consensus 497 ~~l~~~~~~~g~~~~a~~~~~~~~~ 521 (531)
..++.++++. -++++..+..+|..
T Consensus 233 ~qm~sa~Aa~-alqeVs~~~~em~~ 256 (303)
T 2h7o_A 233 RQMMAAHAAI-TLQEVSEFTDDMRN 256 (303)
T ss_dssp HHHHHHHHHH-HHHHHGGGHHHHHH
T ss_pred HHHHHHHHHH-HHHHHHHhhHHHHH
Confidence 8888888775 36666666666654
No 354
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=20.10 E-value=5.3e+02 Score=23.98 Aligned_cols=48 Identities=4% Similarity=-0.146 Sum_probs=30.4
Q ss_pred CHHHHHHHHHHHHHc--------CCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 038190 67 ELNDALCFFNYMIHM--------QPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTI 116 (531)
Q Consensus 67 ~~~~A~~~~~~~~~~--------~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 116 (531)
..++...++...... +...+..+...++.. ..|+...++.+++.+...
T Consensus 166 ~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~--~~Gd~R~lln~Le~a~~~ 221 (447)
T 3pvs_A 166 STEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAEL--VNGDARRALNTLEMMADM 221 (447)
T ss_dssp CHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHH--HCSCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHH--CCCCHHHHHHHHHHHHHh
Confidence 456666677666553 223455556666655 468888888888887543
No 355
>3qil_A Clathrin heavy chain 1; clathrin trimerization domain, endocytosis, structural prote; 3.92A {Bos taurus}
Probab=20.01 E-value=91 Score=22.78 Aligned_cols=52 Identities=4% Similarity=-0.128 Sum_probs=36.1
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCcchHHH
Q 038190 89 SFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFV 143 (531)
Q Consensus 89 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~ 143 (531)
.|.-.|...+..++.+-|.++++.+++.| +...|.+++-.|-..=+++-+++
T Consensus 34 LykDAietAa~S~d~elaEeLL~yFVe~g---~kEcF~A~LytCYdLlrpDvVLE 85 (125)
T 3qil_A 34 LYKDAMQYASESKDTELAEELLQWFLQEE---KRECFGACLFTCYDLLRPDVVLE 85 (125)
T ss_dssp CSSHHHHTTTSSCCSHHHHHHHHHHTTSC---SHHHHHHHHHHHTTCSCTTHHHH
T ss_pred cHHHHHHHHHHcCCHHHHHHHHHHHHHcC---chHHHHHHHHHHHhccChHHHHH
Confidence 45555666677788888888888887766 66667777777766666666554
Done!