Query 038192
Match_columns 764
No_of_seqs 263 out of 2405
Neff 7.3
Searched_HMMs 46136
Date Fri Mar 29 08:31:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038192.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/038192hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0922 DEAH-box RNA helicase 100.0 3E-136 6E-141 1131.7 46.4 522 22-764 38-575 (674)
2 KOG0923 mRNA splicing factor A 100.0 2E-135 5E-140 1108.7 42.0 522 23-763 253-790 (902)
3 KOG0924 mRNA splicing factor A 100.0 1E-132 3E-137 1086.9 41.5 524 22-764 343-881 (1042)
4 KOG0926 DEAH-box RNA helicase 100.0 6E-130 1E-134 1080.6 48.3 658 12-761 233-917 (1172)
5 KOG0925 mRNA splicing factor A 100.0 9E-126 2E-130 1004.2 38.8 528 13-764 24-572 (699)
6 KOG0920 ATP-dependent RNA heli 100.0 4E-122 8E-127 1069.6 32.6 554 22-764 160-736 (924)
7 COG1643 HrpA HrpA-like helicas 100.0 8E-117 2E-121 1030.8 46.0 519 21-762 36-585 (845)
8 PRK11131 ATP-dependent RNA hel 100.0 1E-108 2E-113 992.4 47.1 507 29-764 68-605 (1294)
9 TIGR01967 DEAH_box_HrpA ATP-de 100.0 6E-107 1E-111 980.8 46.5 508 28-764 60-596 (1283)
10 TIGR01970 DEAH_box_HrpB ATP-de 100.0 1.1E-90 2.5E-95 823.3 39.6 430 34-658 1-447 (819)
11 PRK11664 ATP-dependent RNA hel 100.0 5.9E-88 1.3E-92 801.9 39.8 431 33-655 3-449 (812)
12 KOG0921 Dosage compensation co 100.0 1.1E-74 2.3E-79 647.1 14.4 581 24-763 367-964 (1282)
13 PHA02653 RNA helicase NPH-II; 100.0 1.3E-61 2.9E-66 563.1 28.9 393 33-627 163-594 (675)
14 PRK01172 ski2-like helicase; P 100.0 1.8E-33 3.8E-38 334.9 25.4 416 34-628 21-492 (674)
15 KOG0330 ATP-dependent RNA heli 100.0 2.9E-32 6.2E-37 285.5 21.7 303 32-537 81-408 (476)
16 KOG0331 ATP-dependent RNA heli 100.0 4.4E-31 9.6E-36 293.3 17.2 310 33-539 112-451 (519)
17 PRK11776 ATP-dependent RNA hel 100.0 5.3E-30 1.1E-34 292.4 23.7 296 38-538 29-351 (460)
18 COG0513 SrmB Superfamily II DN 100.0 7.3E-30 1.6E-34 293.2 22.7 306 27-536 44-380 (513)
19 PRK04837 ATP-dependent RNA hel 100.0 2.2E-29 4.8E-34 284.3 24.4 307 27-537 23-363 (423)
20 PRK11634 ATP-dependent RNA hel 100.0 3.3E-29 7.2E-34 293.1 24.6 298 37-538 30-354 (629)
21 PTZ00110 helicase; Provisional 100.0 1E-28 2.3E-33 286.0 22.6 303 34-538 152-486 (545)
22 PRK11192 ATP-dependent RNA hel 100.0 2.7E-28 5.7E-33 276.5 24.3 302 38-539 26-355 (434)
23 PRK04537 ATP-dependent RNA hel 100.0 4.6E-28 9.9E-33 281.8 24.9 304 32-537 29-365 (572)
24 PLN00206 DEAD-box ATP-dependen 100.0 5.6E-28 1.2E-32 278.9 24.1 302 34-538 143-477 (518)
25 KOG0333 U5 snRNP-like RNA heli 100.0 1.9E-28 4.1E-33 264.6 18.3 320 14-537 247-625 (673)
26 KOG0345 ATP-dependent RNA heli 100.0 8.4E-29 1.8E-33 264.8 14.9 317 40-555 33-385 (567)
27 PRK02362 ski2-like helicase; P 100.0 2.3E-27 5E-32 284.8 28.5 428 36-628 24-514 (737)
28 PRK10590 ATP-dependent RNA hel 100.0 1.6E-27 3.4E-32 271.5 24.1 305 32-538 21-354 (456)
29 PRK01297 ATP-dependent RNA hel 100.0 4E-27 8.6E-32 269.7 25.8 301 36-537 110-443 (475)
30 PTZ00424 helicase 45; Provisio 100.0 2.7E-27 5.8E-32 265.4 22.0 298 38-539 53-377 (401)
31 KOG0328 Predicted ATP-dependen 100.0 2.3E-27 4.9E-32 239.3 18.6 303 32-539 47-376 (400)
32 KOG0921 Dosage compensation co 100.0 1.9E-30 4.2E-35 292.4 -4.0 432 28-627 399-874 (1282)
33 KOG0343 RNA Helicase [RNA proc 99.9 7.7E-28 1.7E-32 260.9 14.3 312 32-538 89-424 (758)
34 KOG0342 ATP-dependent RNA heli 99.9 4.5E-27 9.7E-32 253.3 16.0 305 39-537 108-438 (543)
35 KOG0338 ATP-dependent RNA heli 99.9 5E-27 1.1E-31 252.7 14.9 307 34-537 203-534 (691)
36 KOG0332 ATP-dependent RNA heli 99.9 3.4E-26 7.4E-31 238.7 19.0 289 50-536 129-443 (477)
37 PRK00254 ski2-like helicase; P 99.9 4.6E-25 9.9E-30 264.3 31.7 422 37-628 25-505 (720)
38 KOG0348 ATP-dependent RNA heli 99.9 8.1E-25 1.8E-29 237.0 20.2 147 32-180 157-341 (708)
39 TIGR03817 DECH_helic helicase/ 99.9 3.3E-24 7.2E-29 255.7 23.1 302 35-534 36-384 (742)
40 PRK11057 ATP-dependent DNA hel 99.9 3.3E-24 7.2E-29 251.8 21.2 301 22-538 11-345 (607)
41 TIGR00614 recQ_fam ATP-depende 99.9 6.3E-24 1.4E-28 242.8 21.9 85 437-539 251-336 (470)
42 KOG0340 ATP-dependent RNA heli 99.9 5.5E-24 1.2E-28 221.2 18.6 307 35-537 30-362 (442)
43 KOG0335 ATP-dependent RNA heli 99.9 2.5E-24 5.3E-29 236.0 15.9 312 32-535 94-443 (482)
44 KOG0347 RNA helicase [RNA proc 99.9 3.5E-25 7.6E-30 240.4 8.6 344 32-565 201-585 (731)
45 KOG0336 ATP-dependent RNA heli 99.9 6E-24 1.3E-28 223.5 14.3 318 21-539 225-575 (629)
46 KOG0326 ATP-dependent RNA heli 99.9 2.1E-24 4.5E-29 221.1 10.3 300 33-538 106-431 (459)
47 KOG0339 ATP-dependent RNA heli 99.9 6.4E-24 1.4E-28 228.4 14.1 308 35-539 246-578 (731)
48 TIGR01587 cas3_core CRISPR-ass 99.9 1.1E-23 2.4E-28 232.7 15.7 125 52-181 1-166 (358)
49 PRK10917 ATP-dependent DNA hel 99.9 7.2E-23 1.6E-27 243.1 21.4 311 25-534 249-587 (681)
50 TIGR02621 cas3_GSU0051 CRISPR- 99.9 4.5E-23 9.7E-28 242.5 18.3 113 440-573 298-428 (844)
51 PLN03137 ATP-dependent DNA hel 99.9 2.2E-22 4.8E-27 239.8 21.9 85 437-539 705-790 (1195)
52 PRK10689 transcription-repair 99.9 1.5E-22 3.2E-27 249.0 20.2 304 26-535 589-918 (1147)
53 TIGR00643 recG ATP-dependent D 99.9 2.1E-22 4.7E-27 237.4 20.6 82 436-534 482-564 (630)
54 PRK13767 ATP-dependent helicas 99.9 3.9E-22 8.4E-27 242.4 22.8 366 38-596 35-477 (876)
55 TIGR00580 mfd transcription-re 99.9 2.5E-22 5.3E-27 242.3 19.8 293 38-536 454-770 (926)
56 TIGR01389 recQ ATP-dependent D 99.9 1E-21 2.3E-26 230.7 18.0 84 437-538 249-333 (591)
57 KOG0350 DEAD-box ATP-dependent 99.8 2.1E-20 4.6E-25 201.8 15.9 78 442-537 463-541 (620)
58 PRK09751 putative ATP-dependen 99.8 8.7E-20 1.9E-24 226.0 20.0 74 437-528 302-375 (1490)
59 KOG0327 Translation initiation 99.8 2.3E-20 5E-25 197.1 12.3 299 33-539 47-373 (397)
60 TIGR03158 cas3_cyano CRISPR-as 99.8 3.5E-19 7.6E-24 196.6 20.7 59 437-522 299-357 (357)
61 KOG0341 DEAD-box protein abstr 99.8 2.7E-20 5.8E-25 195.0 10.4 84 435-536 444-528 (610)
62 KOG0334 RNA helicase [RNA proc 99.8 1.5E-19 3.3E-24 210.9 16.6 296 40-535 392-719 (997)
63 KOG4284 DEAD box protein [Tran 99.8 1.5E-18 3.2E-23 191.6 15.1 305 33-537 46-380 (980)
64 PRK09401 reverse gyrase; Revie 99.8 4.5E-18 9.8E-23 210.1 20.1 115 35-157 80-215 (1176)
65 KOG0346 RNA helicase [RNA proc 99.8 2.1E-18 4.7E-23 183.9 12.6 208 33-252 40-283 (569)
66 PHA02558 uvsW UvsW helicase; P 99.7 7.7E-17 1.7E-21 185.8 19.5 74 437-528 369-443 (501)
67 PRK14701 reverse gyrase; Provi 99.7 1.9E-17 4.1E-22 208.7 15.2 92 436-538 357-458 (1638)
68 TIGR01054 rgy reverse gyrase. 99.7 1.7E-16 3.6E-21 196.6 22.0 116 34-157 77-213 (1171)
69 COG1201 Lhr Lhr-like helicases 99.7 1.2E-16 2.6E-21 187.6 19.1 366 25-593 13-438 (814)
70 TIGR03714 secA2 accessory Sec 99.7 5E-16 1.1E-20 181.7 23.5 108 30-145 63-180 (762)
71 PF04408 HA2: Helicase associa 99.7 1.5E-17 3.3E-22 150.3 7.1 102 586-720 1-102 (102)
72 COG1204 Superfamily II helicas 99.7 3.1E-16 6.8E-21 186.1 19.7 426 39-627 36-525 (766)
73 PRK13766 Hef nuclease; Provisi 99.7 4.6E-16 1E-20 188.9 19.9 76 443-536 404-479 (773)
74 KOG0344 ATP-dependent RNA heli 99.7 8.4E-17 1.8E-21 178.1 11.4 86 435-538 411-497 (593)
75 KOG0337 ATP-dependent RNA heli 99.7 6.4E-16 1.4E-20 164.5 14.1 157 25-186 34-213 (529)
76 PRK09200 preprotein translocas 99.7 5.9E-15 1.3E-19 174.3 23.1 89 437-547 453-550 (790)
77 PRK09694 helicase Cas3; Provis 99.7 3.7E-15 8E-20 178.8 20.8 68 437-525 588-663 (878)
78 COG1205 Distinct helicase fami 99.6 1.4E-15 3.1E-20 182.9 17.0 156 31-194 66-255 (851)
79 TIGR00963 secA preprotein tran 99.6 1.5E-14 3.2E-19 168.6 20.9 87 438-546 431-525 (745)
80 PRK05580 primosome assembly pr 99.6 2.8E-15 6.2E-20 177.9 15.3 145 35-186 144-310 (679)
81 KOG0354 DEAD-box like helicase 99.6 1.7E-14 3.8E-19 166.0 19.9 74 444-536 456-529 (746)
82 COG1111 MPH1 ERCC4-like helica 99.6 1.4E-14 2.9E-19 158.6 17.1 75 444-536 407-481 (542)
83 PRK12898 secA preprotein trans 99.6 4.9E-14 1.1E-18 163.3 22.1 96 35-141 104-203 (656)
84 COG1200 RecG RecG-like helicas 99.6 3.9E-15 8.6E-20 169.0 11.3 84 435-536 506-591 (677)
85 COG1202 Superfamily II helicas 99.6 6.9E-14 1.5E-18 153.8 16.9 370 47-627 229-665 (830)
86 smart00847 HA2 Helicase associ 99.6 6.9E-15 1.5E-19 130.3 7.1 91 586-720 1-92 (92)
87 TIGR00603 rad25 DNA repair hel 99.5 2.3E-13 5E-18 159.5 20.2 82 440-538 519-609 (732)
88 TIGR00595 priA primosomal prot 99.5 1.1E-14 2.4E-19 167.2 8.7 87 436-530 284-375 (505)
89 COG0514 RecQ Superfamily II DN 99.5 1.8E-13 4E-18 155.9 17.6 84 437-538 255-339 (590)
90 COG4098 comFA Superfamily II D 99.5 9E-13 2E-17 137.7 19.9 148 41-205 107-266 (441)
91 PRK13104 secA preprotein trans 99.4 7.6E-12 1.6E-16 148.1 21.7 109 29-145 74-187 (896)
92 KOG0951 RNA helicase BRR2, DEA 99.3 5.8E-11 1.3E-15 140.3 22.0 418 41-616 315-819 (1674)
93 COG1197 Mfd Transcription-repa 99.3 1.1E-11 2.4E-16 148.3 16.4 84 435-536 828-913 (1139)
94 COG4581 Superfamily II RNA hel 99.3 1.6E-11 3.5E-16 146.8 15.7 171 32-214 116-307 (1041)
95 KOG0948 Nuclear exosomal RNA h 99.3 3.3E-11 7.1E-16 136.3 14.0 161 37-210 131-309 (1041)
96 PRK12904 preprotein translocas 99.2 1.4E-10 3.1E-15 137.2 17.8 108 30-145 74-186 (830)
97 KOG0952 DNA/RNA helicase MER3/ 99.2 4.8E-10 1E-14 131.3 20.9 327 43-536 119-491 (1230)
98 KOG0329 ATP-dependent RNA heli 99.2 3.9E-11 8.4E-16 120.8 10.0 145 33-183 63-230 (387)
99 KOG0349 Putative DEAD-box RNA 99.2 1.6E-10 3.4E-15 123.7 11.7 82 435-534 531-613 (725)
100 PF00270 DEAD: DEAD/DEAH box h 99.2 1.1E-10 2.4E-15 114.3 9.7 138 38-181 2-163 (169)
101 PRK13107 preprotein translocas 99.1 1.4E-09 3E-14 128.8 18.9 107 31-145 76-187 (908)
102 COG1203 CRISPR-associated heli 99.1 6.6E-10 1.4E-14 133.6 16.4 79 438-537 466-551 (733)
103 KOG0352 ATP-dependent DNA heli 99.1 4.9E-10 1.1E-14 120.0 13.0 85 436-538 279-364 (641)
104 PF00271 Helicase_C: Helicase 99.1 5E-11 1.1E-15 101.9 4.4 73 435-525 6-78 (78)
105 PRK11448 hsdR type I restricti 99.1 1.3E-09 2.7E-14 135.2 18.4 104 439-563 734-846 (1123)
106 COG1061 SSL2 DNA or RNA helica 99.1 2.9E-09 6.4E-14 121.0 17.1 135 32-180 33-183 (442)
107 cd00268 DEADc DEAD-box helicas 99.1 4.9E-10 1.1E-14 113.6 9.5 148 36-186 22-192 (203)
108 KOG0351 ATP-dependent DNA heli 99.0 3.6E-09 7.8E-14 127.6 15.9 84 439-540 512-596 (941)
109 smart00490 HELICc helicase sup 99.0 4.5E-10 9.8E-15 95.8 5.2 72 436-525 11-82 (82)
110 cd00046 DEXDc DEAD-like helica 99.0 2.3E-09 5.1E-14 99.9 9.9 122 52-180 2-144 (144)
111 KOG0947 Cytoplasmic exosomal R 98.9 3.5E-08 7.5E-13 114.9 17.4 159 35-211 297-478 (1248)
112 cd00079 HELICc Helicase superf 98.9 3.3E-09 7.2E-14 98.9 6.6 77 437-531 53-130 (131)
113 smart00487 DEXDc DEAD-like hel 98.9 1.4E-08 3E-13 100.7 11.0 152 35-193 8-183 (201)
114 PRK12906 secA preprotein trans 98.8 1.7E-08 3.8E-13 119.3 11.3 87 438-546 466-561 (796)
115 TIGR00631 uvrb excinuclease AB 98.8 9.8E-09 2.1E-13 121.4 7.6 88 436-536 466-553 (655)
116 PRK05298 excinuclease ABC subu 98.7 1.7E-08 3.7E-13 119.9 8.3 87 436-535 470-556 (652)
117 KOG0950 DNA polymerase theta/e 98.7 1.2E-07 2.5E-12 111.3 14.1 87 437-537 523-612 (1008)
118 PRK12900 secA preprotein trans 98.6 1.4E-07 3.1E-12 112.5 10.9 86 439-546 625-719 (1025)
119 PRK04914 ATP-dependent helicas 98.5 2.4E-07 5.1E-12 113.0 9.8 83 436-536 518-605 (956)
120 PF07652 Flavi_DEAD: Flaviviru 98.3 3.6E-07 7.8E-12 86.5 4.2 118 49-181 3-137 (148)
121 PRK12899 secA preprotein trans 98.3 9.4E-07 2E-11 105.4 7.6 115 36-158 93-230 (970)
122 KOG0953 Mitochondrial RNA heli 98.3 1.8E-05 3.9E-10 88.4 16.9 88 438-536 383-477 (700)
123 COG1110 Reverse gyrase [DNA re 98.3 4.3E-05 9.3E-10 90.9 19.4 104 35-146 82-197 (1187)
124 KOG0353 ATP-dependent DNA heli 98.3 3.5E-05 7.7E-10 82.0 16.9 57 437-493 342-398 (695)
125 PRK12326 preprotein translocas 98.0 0.00019 4.2E-09 84.1 18.5 102 31-140 72-177 (764)
126 COG4096 HsdR Type I site-speci 98.0 0.00066 1.4E-08 79.9 22.1 98 451-568 471-579 (875)
127 TIGR00348 hsdR type I site-spe 97.9 0.00024 5.2E-09 85.2 16.7 140 32-180 236-402 (667)
128 PF04851 ResIII: Type III rest 97.8 1E-05 2.3E-10 79.7 2.4 133 36-180 4-182 (184)
129 PF13245 AAA_19: Part of AAA d 97.8 5.7E-05 1.2E-09 64.5 6.4 60 43-105 3-62 (76)
130 COG1198 PriA Primosomal protei 97.6 0.00013 2.8E-09 86.6 8.6 146 34-186 197-365 (730)
131 TIGR02562 cas3_yersinia CRISPR 97.6 0.0019 4.1E-08 78.6 17.8 45 28-72 401-453 (1110)
132 KOG0949 Predicted helicase, DE 97.5 0.00086 1.9E-08 79.5 13.3 97 439-553 965-1065(1330)
133 CHL00122 secA preprotein trans 97.2 0.0084 1.8E-07 72.1 17.0 96 31-139 70-174 (870)
134 KOG4150 Predicted ATP-dependen 97.2 0.00028 6E-09 78.9 3.5 70 439-526 560-629 (1034)
135 PRK12903 secA preprotein trans 96.8 0.0076 1.7E-07 72.2 11.9 98 30-140 71-177 (925)
136 PF13086 AAA_11: AAA domain; P 96.6 0.0028 6.1E-08 64.8 5.4 68 40-107 6-75 (236)
137 PF00448 SRP54: SRP54-type pro 96.4 0.0037 8.1E-08 63.4 4.9 116 51-185 2-130 (196)
138 PRK12899 secA preprotein trans 96.3 0.02 4.4E-07 69.4 11.1 78 172-259 505-590 (970)
139 TIGR01407 dinG_rel DnaQ family 96.3 0.029 6.3E-07 69.5 12.9 114 450-564 713-848 (850)
140 PLN03142 Probable chromatin-re 96.2 0.0065 1.4E-07 75.3 6.4 86 436-539 511-602 (1033)
141 COG0556 UvrB Helicase subunit 96.2 0.066 1.4E-06 60.6 13.3 82 436-530 470-551 (663)
142 PRK12724 flagellar biosynthesi 96.1 0.0033 7.1E-08 70.4 2.6 132 50-193 223-357 (432)
143 TIGR00376 DNA helicase, putati 95.9 0.014 3.1E-07 69.6 7.0 64 38-108 161-224 (637)
144 PF05729 NACHT: NACHT domain 95.9 0.011 2.3E-07 57.1 4.9 25 51-75 1-25 (166)
145 PRK10536 hypothetical protein; 95.9 0.013 2.9E-07 61.5 5.7 57 34-95 58-114 (262)
146 PF00580 UvrD-helicase: UvrD/R 95.8 0.015 3.2E-07 62.6 6.1 65 39-111 4-71 (315)
147 PRK13103 secA preprotein trans 95.8 0.049 1.1E-06 66.0 10.7 103 31-141 76-182 (913)
148 KOG1803 DNA helicase [Replicat 95.7 0.02 4.4E-07 65.6 7.0 61 39-106 189-250 (649)
149 TIGR03117 cas_csf4 CRISPR-asso 95.5 0.038 8.2E-07 65.4 8.4 60 40-104 6-65 (636)
150 PRK12901 secA preprotein trans 95.5 0.071 1.5E-06 65.2 10.5 54 464-535 678-740 (1112)
151 PF02562 PhoH: PhoH-like prote 95.4 0.023 4.9E-07 57.9 5.4 55 35-94 4-58 (205)
152 PRK14974 cell division protein 95.1 0.039 8.6E-07 60.6 6.4 116 51-181 141-265 (336)
153 PF00437 T2SE: Type II/IV secr 95.1 0.022 4.7E-07 60.6 4.3 46 43-95 120-165 (270)
154 PF13401 AAA_22: AAA domain; P 95.1 0.015 3.3E-07 54.1 2.7 66 48-114 2-67 (131)
155 PRK07246 bifunctional ATP-depe 95.0 0.048 1E-06 67.0 7.6 65 42-114 256-320 (820)
156 KOG0951 RNA helicase BRR2, DEA 94.9 1.3 2.8E-05 55.1 18.8 80 443-534 1412-1492(1674)
157 PRK10416 signal recognition pa 94.8 0.034 7.4E-07 60.7 5.0 120 50-185 114-249 (318)
158 PRK10875 recD exonuclease V su 94.8 0.065 1.4E-06 63.5 7.7 67 38-108 156-222 (615)
159 PRK12723 flagellar biosynthesi 94.7 0.035 7.6E-07 62.1 4.8 125 50-186 174-303 (388)
160 PF13604 AAA_30: AAA domain; P 94.4 0.082 1.8E-06 53.6 6.3 58 40-104 6-65 (196)
161 PRK14721 flhF flagellar biosyn 94.3 0.086 1.9E-06 59.5 6.6 124 49-186 190-317 (420)
162 TIGR02782 TrbB_P P-type conjug 94.1 0.092 2E-06 56.9 6.3 53 39-96 121-173 (299)
163 TIGR01447 recD exodeoxyribonuc 94.0 0.12 2.5E-06 61.2 7.4 65 40-108 150-216 (586)
164 TIGR01407 dinG_rel DnaQ family 94.0 0.11 2.3E-06 64.5 7.4 62 42-110 256-317 (850)
165 KOG1802 RNA helicase nonsense 94.0 0.11 2.4E-06 60.1 6.6 92 38-143 413-506 (935)
166 PRK13833 conjugal transfer pro 93.8 0.095 2.1E-06 57.3 5.7 52 40-96 134-185 (323)
167 PF13555 AAA_29: P-loop contai 93.5 0.035 7.5E-07 45.3 1.3 18 51-68 24-41 (62)
168 TIGR03499 FlhF flagellar biosy 93.5 0.11 2.3E-06 55.9 5.4 59 50-111 194-252 (282)
169 PRK13900 type IV secretion sys 93.1 0.12 2.6E-06 56.9 5.1 47 42-96 152-198 (332)
170 PF02399 Herpes_ori_bp: Origin 93.1 0.19 4E-06 60.3 7.0 55 48-108 47-101 (824)
171 cd01130 VirB11-like_ATPase Typ 92.9 0.097 2.1E-06 52.5 3.8 30 40-69 15-44 (186)
172 cd00009 AAA The AAA+ (ATPases 92.9 0.11 2.5E-06 48.1 4.1 32 40-71 7-40 (151)
173 PRK14723 flhF flagellar biosyn 92.8 0.13 2.7E-06 62.0 5.0 123 50-186 185-311 (767)
174 PRK12726 flagellar biosynthesi 92.6 0.11 2.4E-06 57.7 3.8 59 48-111 204-262 (407)
175 PRK05703 flhF flagellar biosyn 92.5 0.19 4.2E-06 57.1 5.9 123 50-186 221-348 (424)
176 COG3910 Predicted ATPase [Gene 92.5 0.064 1.4E-06 53.3 1.7 43 26-70 15-57 (233)
177 PRK13894 conjugal transfer ATP 92.5 0.19 4.2E-06 54.9 5.6 31 39-69 137-167 (319)
178 PRK14722 flhF flagellar biosyn 92.4 0.16 3.6E-06 56.4 4.9 126 47-185 134-262 (374)
179 TIGR01448 recD_rel helicase, p 92.2 0.32 7E-06 59.1 7.6 66 32-102 320-385 (720)
180 COG1419 FlhF Flagellar GTP-bin 92.2 0.32 6.9E-06 54.1 6.9 61 50-113 203-263 (407)
181 cd01129 PulE-GspE PulE/GspE Th 92.1 0.14 3E-06 54.5 3.9 32 41-72 70-102 (264)
182 smart00489 DEXDc3 DEAD-like he 92.1 0.35 7.5E-06 52.2 7.0 31 42-72 19-49 (289)
183 smart00488 DEXDc2 DEAD-like he 92.1 0.35 7.5E-06 52.2 7.0 31 42-72 19-49 (289)
184 PRK11889 flhF flagellar biosyn 91.9 0.23 4.9E-06 55.5 5.3 56 51-111 242-297 (436)
185 COG2804 PulE Type II secretory 91.9 0.24 5.3E-06 56.4 5.7 43 33-75 239-283 (500)
186 TIGR01425 SRP54_euk signal rec 91.7 0.4 8.6E-06 54.3 7.1 55 51-110 101-155 (429)
187 TIGR02524 dot_icm_DotB Dot/Icm 91.6 0.14 3.1E-06 56.8 3.4 28 42-69 125-153 (358)
188 COG2805 PilT Tfp pilus assembl 91.5 0.097 2.1E-06 55.7 1.9 22 51-72 126-147 (353)
189 PRK13851 type IV secretion sys 91.5 0.17 3.6E-06 55.9 3.7 45 43-95 155-199 (344)
190 cd01131 PilT Pilus retraction 91.5 0.18 3.9E-06 51.2 3.8 20 52-71 3-22 (198)
191 PRK08074 bifunctional ATP-depe 91.3 1.9 4.1E-05 54.1 13.2 110 453-564 795-926 (928)
192 PF13207 AAA_17: AAA domain; P 91.3 0.095 2.1E-06 48.1 1.3 16 52-67 1-16 (121)
193 PF05970 PIF1: PIF1-like helic 91.2 0.39 8.4E-06 53.6 6.3 55 40-101 6-66 (364)
194 cd01124 KaiC KaiC is a circadi 91.2 0.28 6.1E-06 48.6 4.8 25 52-76 1-25 (187)
195 smart00382 AAA ATPases associa 91.1 0.13 2.8E-06 47.2 2.1 25 50-74 2-26 (148)
196 PRK06731 flhF flagellar biosyn 90.8 1.2 2.6E-05 47.5 9.4 54 49-107 74-127 (270)
197 PRK12727 flagellar biosynthesi 90.8 0.25 5.3E-06 57.1 4.3 58 46-106 346-403 (559)
198 TIGR01420 pilT_fam pilus retra 90.7 0.26 5.6E-06 54.5 4.3 30 42-71 113-143 (343)
199 COG1126 GlnQ ABC-type polar am 90.7 0.1 2.3E-06 53.1 1.1 23 46-68 24-46 (240)
200 PRK06995 flhF flagellar biosyn 90.7 0.34 7.5E-06 55.7 5.4 124 49-186 255-382 (484)
201 PRK10867 signal recognition pa 90.6 0.32 7E-06 55.3 5.1 57 51-111 101-157 (433)
202 PRK12902 secA preprotein trans 90.5 1.4 3.1E-05 53.7 10.4 102 29-141 77-185 (939)
203 cd03115 SRP The signal recogni 90.4 0.33 7.3E-06 47.7 4.5 51 52-107 2-52 (173)
204 PRK13103 secA preprotein trans 90.2 0.4 8.7E-06 58.4 5.6 56 463-536 498-591 (913)
205 COG4962 CpaF Flp pilus assembl 90.1 0.38 8.2E-06 52.4 4.8 46 43-96 166-211 (355)
206 PRK00771 signal recognition pa 89.9 0.59 1.3E-05 53.2 6.4 57 51-112 96-152 (437)
207 PF12846 AAA_10: AAA-like doma 89.6 0.28 6E-06 52.2 3.4 41 50-97 1-41 (304)
208 PRK08074 bifunctional ATP-depe 89.4 0.7 1.5E-05 57.9 7.2 68 31-104 250-324 (928)
209 TIGR00150 HI0065_YjeE ATPase, 89.4 0.22 4.7E-06 47.3 2.0 31 40-70 12-42 (133)
210 PF02367 UPF0079: Uncharacteri 89.4 0.22 4.7E-06 46.6 2.0 33 39-71 4-36 (123)
211 COG1136 SalX ABC-type antimicr 89.3 0.15 3.3E-06 52.6 1.0 23 47-69 28-50 (226)
212 TIGR02525 plasmid_TraJ plasmid 89.3 0.27 5.7E-06 54.9 3.0 22 48-69 147-168 (372)
213 TIGR02640 gas_vesic_GvpN gas v 89.2 0.28 6.1E-06 52.1 3.0 33 37-69 8-40 (262)
214 PF13173 AAA_14: AAA domain 89.2 0.27 5.8E-06 46.0 2.5 27 49-75 1-27 (128)
215 TIGR00959 ffh signal recogniti 89.1 0.55 1.2E-05 53.4 5.4 57 51-111 100-156 (428)
216 TIGR00064 ftsY signal recognit 89.1 0.56 1.2E-05 50.1 5.1 56 50-110 72-127 (272)
217 PRK11747 dinG ATP-dependent DN 89.0 4.2 9E-05 49.4 13.1 73 460-532 583-671 (697)
218 PF00005 ABC_tran: ABC transpo 88.8 0.15 3.3E-06 47.8 0.6 21 48-68 9-29 (137)
219 TIGR02533 type_II_gspE general 88.7 0.38 8.3E-06 55.6 3.9 30 42-71 233-263 (486)
220 PRK13764 ATPase; Provisional 88.7 0.46 9.9E-06 56.1 4.5 32 42-74 248-280 (602)
221 PRK10436 hypothetical protein; 88.7 0.43 9.2E-06 54.8 4.1 30 42-71 209-239 (462)
222 TIGR02768 TraA_Ti Ti-type conj 88.6 0.79 1.7E-05 56.0 6.6 61 35-102 352-413 (744)
223 TIGR02788 VirB11 P-type DNA tr 88.6 0.4 8.7E-06 52.2 3.7 28 45-73 139-166 (308)
224 PF13671 AAA_33: AAA domain; P 88.6 0.26 5.7E-06 46.5 2.0 22 52-73 1-22 (143)
225 PF06745 KaiC: KaiC; InterPro 88.5 0.51 1.1E-05 48.6 4.3 29 49-77 18-46 (226)
226 KOG1970 Checkpoint RAD17-RFC c 88.5 0.45 9.8E-06 54.4 4.1 27 49-75 109-135 (634)
227 PRK11054 helD DNA helicase IV; 88.4 1.1 2.3E-05 54.2 7.5 69 34-110 195-266 (684)
228 TIGR03877 thermo_KaiC_1 KaiC d 88.3 0.38 8.2E-06 50.2 3.2 28 48-75 19-46 (237)
229 TIGR03878 thermo_KaiC_2 KaiC d 88.3 0.79 1.7E-05 48.6 5.6 28 49-76 35-62 (259)
230 COG1116 TauB ABC-type nitrate/ 88.1 0.2 4.3E-06 52.2 0.9 22 47-68 26-47 (248)
231 PRK10919 ATP-dependent DNA hel 88.0 0.8 1.7E-05 55.3 6.1 64 39-111 6-73 (672)
232 PHA03311 helicase-primase subu 87.9 0.51 1.1E-05 55.9 4.2 44 51-106 72-115 (828)
233 PF03193 DUF258: Protein of un 87.9 0.36 7.8E-06 47.3 2.5 31 40-71 26-56 (161)
234 PRK08233 hypothetical protein; 87.9 0.22 4.9E-06 49.1 1.1 20 51-70 4-23 (182)
235 TIGR03015 pepcterm_ATPase puta 87.8 1.1 2.5E-05 47.1 6.5 27 47-73 39-66 (269)
236 COG3839 MalK ABC-type sugar tr 87.7 0.22 4.8E-06 54.5 1.0 22 47-68 26-47 (338)
237 PRK08533 flagellar accessory p 87.5 0.77 1.7E-05 47.8 4.9 28 47-74 21-48 (230)
238 TIGR02538 type_IV_pilB type IV 87.5 0.51 1.1E-05 55.8 3.9 32 40-71 305-337 (564)
239 cd03238 ABC_UvrA The excision 87.4 0.24 5.2E-06 49.4 1.0 23 47-69 18-40 (176)
240 PF13191 AAA_16: AAA ATPase do 87.4 0.34 7.4E-06 47.7 2.1 23 49-71 23-45 (185)
241 PF12775 AAA_7: P-loop contain 87.3 0.51 1.1E-05 50.5 3.5 30 43-72 25-55 (272)
242 PRK05973 replicative DNA helic 87.3 0.46 1E-05 49.6 3.1 36 41-76 55-90 (237)
243 TIGR03263 guanyl_kin guanylate 87.3 0.35 7.6E-06 47.8 2.1 21 50-70 1-21 (180)
244 KOG0391 SNF2 family DNA-depend 87.1 1.8 3.9E-05 53.4 8.1 90 435-539 1299-1390(1958)
245 PRK04296 thymidine kinase; Pro 87.1 0.49 1.1E-05 47.7 3.0 26 50-75 2-27 (190)
246 PRK00300 gmk guanylate kinase; 87.1 0.28 6E-06 49.7 1.2 24 48-71 3-26 (205)
247 PF00931 NB-ARC: NB-ARC domain 86.9 0.82 1.8E-05 48.6 4.8 70 39-112 4-77 (287)
248 cd00820 PEPCK_HprK Phosphoenol 86.7 0.31 6.7E-06 44.4 1.2 24 48-71 13-36 (107)
249 cd01127 TrwB Bacterial conjuga 86.6 0.51 1.1E-05 53.5 3.2 47 43-97 36-82 (410)
250 PF13238 AAA_18: AAA domain; P 86.6 0.3 6.5E-06 44.9 1.1 15 53-67 1-15 (129)
251 COG5008 PilU Tfp pilus assembl 86.4 0.46 1E-05 49.7 2.4 25 47-71 124-148 (375)
252 PRK13889 conjugal transfer rel 86.3 1.2 2.6E-05 55.6 6.4 63 33-102 344-407 (988)
253 cd00984 DnaB_C DnaB helicase C 86.0 0.38 8.2E-06 50.0 1.6 34 43-76 6-39 (242)
254 COG1117 PstB ABC-type phosphat 86.0 0.34 7.3E-06 49.4 1.2 22 47-68 30-51 (253)
255 COG0630 VirB11 Type IV secreto 85.9 0.58 1.3E-05 51.0 3.1 33 40-72 133-165 (312)
256 cd02019 NK Nucleoside/nucleoti 85.9 0.32 7E-06 40.4 0.8 19 52-70 1-19 (69)
257 KOG2373 Predicted mitochondria 85.8 0.51 1.1E-05 51.0 2.5 27 50-76 273-299 (514)
258 COG1702 PhoH Phosphate starvat 85.7 0.77 1.7E-05 49.9 3.8 67 34-118 127-194 (348)
259 TIGR01075 uvrD DNA helicase II 85.6 1.5 3.3E-05 53.4 6.8 63 40-110 9-74 (715)
260 PF00004 AAA: ATPase family as 85.6 0.35 7.6E-06 44.6 1.0 17 53-69 1-17 (132)
261 COG4525 TauB ABC-type taurine 85.6 0.37 8.1E-06 48.4 1.2 23 46-68 27-49 (259)
262 PF07728 AAA_5: AAA domain (dy 85.5 0.37 8.1E-06 45.5 1.2 17 53-69 2-18 (139)
263 COG1199 DinG Rad3-related DNA 85.5 13 0.00029 44.7 14.7 112 444-557 512-642 (654)
264 cd01120 RecA-like_NTPases RecA 85.5 0.74 1.6E-05 43.8 3.3 25 52-76 1-25 (165)
265 PRK04328 hypothetical protein; 85.4 1.1 2.4E-05 47.1 4.9 27 49-75 22-48 (249)
266 TIGR03238 dnd_assoc_3 dnd syst 85.4 0.39 8.5E-06 54.7 1.4 22 47-68 29-50 (504)
267 TIGR01359 UMP_CMP_kin_fam UMP- 85.4 0.34 7.3E-06 48.0 0.9 19 52-70 1-19 (183)
268 PRK05541 adenylylsulfate kinas 85.4 0.24 5.2E-06 48.9 -0.2 25 46-70 3-27 (176)
269 TIGR00235 udk uridine kinase. 85.3 0.35 7.5E-06 49.3 0.9 20 49-68 5-24 (207)
270 TIGR01074 rep ATP-dependent DN 85.3 1.5 3.2E-05 52.9 6.5 67 40-111 6-72 (664)
271 COG1122 CbiO ABC-type cobalt t 85.3 0.34 7.4E-06 50.6 0.9 23 47-69 27-49 (235)
272 PRK07246 bifunctional ATP-depe 85.3 12 0.00026 46.4 14.2 108 455-564 687-817 (820)
273 PHA02244 ATPase-like protein 85.2 0.64 1.4E-05 51.5 2.9 35 38-72 107-141 (383)
274 COG3973 Superfamily I DNA and 85.2 2.1 4.5E-05 49.8 7.0 59 49-112 225-286 (747)
275 PRK12906 secA preprotein trans 84.8 1.4 3.1E-05 53.4 5.9 104 30-141 73-180 (796)
276 TIGR01360 aden_kin_iso1 adenyl 84.7 0.44 9.5E-06 47.2 1.3 22 50-71 3-24 (188)
277 PRK07667 uridine kinase; Provi 84.7 0.65 1.4E-05 46.8 2.6 27 41-67 4-34 (193)
278 COG0467 RAD55 RecA-superfamily 84.4 1.5 3.1E-05 46.4 5.2 30 47-76 20-49 (260)
279 TIGR01166 cbiO cobalt transpor 84.2 0.42 9.2E-06 47.8 1.0 22 47-68 15-36 (190)
280 PRK10078 ribose 1,5-bisphospho 84.1 0.5 1.1E-05 47.3 1.5 21 50-70 2-22 (186)
281 PRK11747 dinG ATP-dependent DN 84.1 2.3 5.1E-05 51.6 7.4 54 42-103 36-96 (697)
282 KOG0390 DNA repair protein, SN 84.0 4 8.6E-05 49.4 9.0 88 436-538 619-709 (776)
283 cd01122 GP4d_helicase GP4d_hel 84.0 0.26 5.7E-06 52.2 -0.6 34 42-75 22-55 (271)
284 TIGR02655 circ_KaiC circadian 84.0 1.2 2.6E-05 51.6 4.7 30 47-76 260-289 (484)
285 cd03292 ABC_FtsE_transporter F 83.7 0.45 9.8E-06 48.5 1.0 22 47-68 24-45 (214)
286 PRK14530 adenylate kinase; Pro 83.7 0.51 1.1E-05 48.4 1.3 21 50-70 3-23 (215)
287 PRK15177 Vi polysaccharide exp 83.7 0.46 1E-05 48.7 1.0 22 47-68 10-31 (213)
288 COG1120 FepC ABC-type cobalami 83.7 0.46 1E-05 50.1 1.0 23 47-69 25-47 (258)
289 cd00071 GMPK Guanosine monopho 83.7 0.59 1.3E-05 44.5 1.6 18 53-70 2-19 (137)
290 COG0802 Predicted ATPase or ki 83.6 0.78 1.7E-05 44.2 2.4 34 39-72 14-47 (149)
291 PRK13541 cytochrome c biogenes 83.6 0.46 1E-05 47.8 1.0 22 47-68 23-44 (195)
292 cd03226 ABC_cobalt_CbiO_domain 83.6 0.46 1E-05 48.2 1.0 23 47-69 23-45 (205)
293 TIGR02237 recomb_radB DNA repa 83.6 1 2.2E-05 45.8 3.4 27 49-75 11-37 (209)
294 TIGR03608 L_ocin_972_ABC putat 83.6 0.45 9.8E-06 48.2 0.8 22 47-68 21-42 (206)
295 TIGR02322 phosphon_PhnN phosph 83.5 0.54 1.2E-05 46.5 1.4 20 51-70 2-21 (179)
296 cd03255 ABC_MJ0796_Lo1CDE_FtsE 83.5 0.46 1E-05 48.6 0.9 23 47-69 27-49 (218)
297 cd01394 radB RadB. The archaea 83.5 0.64 1.4E-05 47.6 2.0 29 47-75 16-44 (218)
298 cd03269 ABC_putative_ATPase Th 83.5 0.47 1E-05 48.2 1.0 23 47-69 23-45 (210)
299 PRK14729 miaA tRNA delta(2)-is 83.4 0.48 1E-05 51.3 1.0 17 49-65 3-19 (300)
300 cd02020 CMPK Cytidine monophos 83.3 0.5 1.1E-05 44.7 1.0 18 52-69 1-18 (147)
301 cd01123 Rad51_DMC1_radA Rad51_ 83.2 1.4 3.1E-05 45.5 4.4 28 47-74 16-43 (235)
302 PF13476 AAA_23: AAA domain; P 83.2 0.52 1.1E-05 46.9 1.1 19 49-67 18-36 (202)
303 cd03235 ABC_Metallic_Cations A 83.2 0.5 1.1E-05 48.2 1.0 23 47-69 22-44 (213)
304 COG0563 Adk Adenylate kinase a 83.1 0.51 1.1E-05 47.1 1.0 17 53-69 3-19 (178)
305 cd03224 ABC_TM1139_LivF_branch 83.1 0.48 1E-05 48.6 0.8 22 47-68 23-44 (222)
306 cd03258 ABC_MetN_methionine_tr 83.1 0.5 1.1E-05 48.9 1.0 22 47-68 28-49 (233)
307 TIGR02315 ABC_phnC phosphonate 83.1 0.5 1.1E-05 49.2 1.0 22 47-68 25-46 (243)
308 PF14532 Sigma54_activ_2: Sigm 83.0 0.85 1.8E-05 43.2 2.5 38 37-75 8-45 (138)
309 PRK14527 adenylate kinase; Pro 83.0 0.58 1.3E-05 47.0 1.4 23 49-71 5-27 (191)
310 PRK07261 topology modulation p 82.9 0.54 1.2E-05 46.5 1.1 17 53-69 3-19 (171)
311 TIGR02673 FtsE cell division A 82.8 0.53 1.2E-05 48.0 1.0 22 47-68 25-46 (214)
312 TIGR01650 PD_CobS cobaltochela 82.8 1.2 2.6E-05 48.7 3.7 35 41-75 55-89 (327)
313 cd03225 ABC_cobalt_CbiO_domain 82.8 0.5 1.1E-05 48.0 0.8 22 47-68 24-45 (211)
314 PRK14531 adenylate kinase; Pro 82.7 0.58 1.2E-05 46.7 1.2 19 52-70 4-22 (183)
315 cd03268 ABC_BcrA_bacitracin_re 82.6 0.52 1.1E-05 47.9 0.9 23 47-69 23-45 (208)
316 PF03215 Rad17: Rad17 cell cyc 82.6 1.2 2.5E-05 52.0 3.8 21 50-70 45-65 (519)
317 PRK11773 uvrD DNA-dependent he 82.6 3 6.4E-05 51.0 7.5 63 39-110 13-79 (721)
318 PF00176 SNF2_N: SNF2 family N 82.5 3.4 7.4E-05 43.8 7.2 126 49-180 24-172 (299)
319 PRK08356 hypothetical protein; 82.5 0.57 1.2E-05 47.3 1.1 20 51-70 6-25 (195)
320 cd03229 ABC_Class3 This class 82.5 0.54 1.2E-05 46.6 0.9 23 47-69 23-45 (178)
321 PRK06762 hypothetical protein; 82.4 0.58 1.3E-05 45.6 1.1 20 51-70 3-22 (166)
322 cd03221 ABCF_EF-3 ABCF_EF-3 E 82.4 0.55 1.2E-05 45.0 0.9 22 47-68 23-44 (144)
323 TIGR03819 heli_sec_ATPase heli 82.4 1.3 2.7E-05 49.0 3.8 28 43-70 171-198 (340)
324 PRK00698 tmk thymidylate kinas 82.4 0.62 1.3E-05 46.9 1.3 20 50-69 3-22 (205)
325 cd03259 ABC_Carb_Solutes_like 82.3 0.56 1.2E-05 47.8 1.0 22 47-68 23-44 (213)
326 cd03219 ABC_Mj1267_LivG_branch 82.3 0.57 1.2E-05 48.6 1.0 23 47-69 23-45 (236)
327 PF01580 FtsK_SpoIIIE: FtsK/Sp 82.3 1.2 2.6E-05 45.1 3.4 44 49-95 37-80 (205)
328 PF00485 PRK: Phosphoribulokin 82.2 0.64 1.4E-05 46.8 1.3 16 52-67 1-16 (194)
329 cd03247 ABCC_cytochrome_bd The 82.2 0.57 1.2E-05 46.4 0.9 23 47-69 25-47 (178)
330 PRK13539 cytochrome c biogenes 82.2 0.56 1.2E-05 47.7 0.9 23 47-69 25-47 (207)
331 cd03265 ABC_DrrA DrrA is the A 82.1 0.57 1.2E-05 48.0 1.0 23 47-69 23-45 (220)
332 cd03230 ABC_DR_subfamily_A Thi 82.1 0.59 1.3E-05 46.1 1.0 22 47-68 23-44 (173)
333 PRK01184 hypothetical protein; 82.1 0.93 2E-05 45.0 2.5 18 52-70 3-20 (184)
334 cd03223 ABCD_peroxisomal_ALDP 82.0 0.59 1.3E-05 45.9 1.0 23 47-69 24-46 (166)
335 TIGR03864 PQQ_ABC_ATP ABC tran 82.0 0.57 1.2E-05 48.7 0.9 23 47-69 24-46 (236)
336 cd03246 ABCC_Protease_Secretio 82.0 0.58 1.3E-05 46.2 0.9 22 47-68 25-46 (173)
337 PRK10584 putative ABC transpor 81.9 0.58 1.3E-05 48.2 0.9 22 47-68 33-54 (228)
338 cd02023 UMPK Uridine monophosp 81.9 0.58 1.3E-05 47.1 0.9 17 52-68 1-17 (198)
339 TIGR03881 KaiC_arch_4 KaiC dom 81.9 1.9 4E-05 44.5 4.7 29 47-75 17-45 (229)
340 cd03237 ABC_RNaseL_inhibitor_d 81.8 0.62 1.4E-05 48.9 1.1 23 47-69 22-44 (246)
341 cd03222 ABC_RNaseL_inhibitor T 81.8 0.52 1.1E-05 47.0 0.5 24 46-69 21-44 (177)
342 TIGR02655 circ_KaiC circadian 81.8 1.2 2.6E-05 51.6 3.6 28 49-76 20-47 (484)
343 TIGR00960 3a0501s02 Type II (G 81.7 0.6 1.3E-05 47.7 0.9 23 47-69 26-48 (216)
344 smart00072 GuKc Guanylate kina 81.7 0.91 2E-05 45.3 2.2 24 50-73 2-25 (184)
345 cd03262 ABC_HisP_GlnQ_permease 81.7 0.61 1.3E-05 47.5 1.0 22 47-68 23-44 (213)
346 PRK05480 uridine/cytidine kina 81.7 0.67 1.4E-05 47.2 1.3 19 49-67 5-23 (209)
347 PRK14242 phosphate transporter 81.7 0.59 1.3E-05 49.1 0.9 23 47-69 29-51 (253)
348 cd03270 ABC_UvrA_I The excisio 81.6 0.65 1.4E-05 48.1 1.2 21 47-67 18-38 (226)
349 cd00267 ABC_ATPase ABC (ATP-bi 81.6 0.62 1.3E-05 45.1 0.9 23 47-69 22-44 (157)
350 TIGR03410 urea_trans_UrtE urea 81.6 0.61 1.3E-05 48.2 1.0 22 47-68 23-44 (230)
351 cd03293 ABC_NrtD_SsuB_transpor 81.6 0.56 1.2E-05 48.1 0.7 22 47-68 27-48 (220)
352 cd03260 ABC_PstB_phosphate_tra 81.6 0.6 1.3E-05 48.1 0.9 23 47-69 23-45 (227)
353 PRK12902 secA preprotein trans 81.5 2.2 4.7E-05 52.2 5.6 15 515-529 666-681 (939)
354 cd00227 CPT Chloramphenicol (C 81.5 0.75 1.6E-05 45.5 1.5 21 50-70 2-22 (175)
355 PRK14247 phosphate ABC transpo 81.5 0.61 1.3E-05 48.9 0.9 22 47-68 26-47 (250)
356 TIGR01978 sufC FeS assembly AT 81.4 0.64 1.4E-05 48.3 1.0 22 47-68 23-44 (243)
357 PRK06547 hypothetical protein; 81.4 1.1 2.4E-05 44.4 2.6 26 43-68 6-33 (172)
358 TIGR02211 LolD_lipo_ex lipopro 81.3 0.62 1.4E-05 47.7 0.9 23 47-69 28-50 (221)
359 cd03261 ABC_Org_Solvent_Resist 81.3 0.62 1.3E-05 48.3 0.9 23 47-69 23-45 (235)
360 PRK12402 replication factor C 81.2 1.2 2.6E-05 48.6 3.2 32 39-70 23-56 (337)
361 PRK10908 cell division protein 81.1 0.66 1.4E-05 47.7 1.0 23 47-69 25-47 (222)
362 cd03301 ABC_MalK_N The N-termi 81.1 0.64 1.4E-05 47.3 0.9 21 47-67 23-43 (213)
363 PRK13538 cytochrome c biogenes 81.0 0.64 1.4E-05 47.2 0.8 22 47-68 24-45 (204)
364 cd03214 ABC_Iron-Siderophores_ 81.0 0.66 1.4E-05 46.1 0.9 22 47-68 22-43 (180)
365 cd03283 ABC_MutS-like MutS-lik 80.9 0.8 1.7E-05 46.5 1.5 22 50-71 25-46 (199)
366 cd01673 dNK Deoxyribonucleosid 80.9 0.67 1.5E-05 46.4 1.0 18 52-69 1-18 (193)
367 cd03266 ABC_NatA_sodium_export 80.8 0.68 1.5E-05 47.3 1.0 22 47-68 28-49 (218)
368 PRK11629 lolD lipoprotein tran 80.8 0.67 1.4E-05 48.0 0.9 22 47-68 32-53 (233)
369 TIGR02759 TraD_Ftype type IV c 80.8 1.2 2.6E-05 52.7 3.1 38 50-94 176-213 (566)
370 PRK10247 putative ABC transpor 80.8 0.69 1.5E-05 47.7 1.0 23 47-69 30-52 (225)
371 PLN02165 adenylate isopentenyl 80.7 0.74 1.6E-05 50.4 1.3 21 49-69 42-62 (334)
372 cd03218 ABC_YhbG The ABC trans 80.7 0.69 1.5E-05 47.8 1.0 22 47-68 23-44 (232)
373 cd03256 ABC_PhnC_transporter A 80.7 0.69 1.5E-05 48.1 1.0 23 47-69 24-46 (241)
374 PRK13543 cytochrome c biogenes 80.7 0.68 1.5E-05 47.4 0.9 22 47-68 34-55 (214)
375 cd03232 ABC_PDR_domain2 The pl 80.6 0.64 1.4E-05 46.7 0.7 23 47-69 30-52 (192)
376 cd03257 ABC_NikE_OppD_transpor 80.6 0.7 1.5E-05 47.5 1.0 22 47-68 28-49 (228)
377 PRK04841 transcriptional regul 80.5 1.4 3E-05 55.0 3.8 49 5-72 3-54 (903)
378 cd03279 ABC_sbcCD SbcCD and ot 80.5 0.85 1.8E-05 46.7 1.6 19 49-67 27-45 (213)
379 TIGR02324 CP_lyasePhnL phospho 80.5 0.69 1.5E-05 47.6 0.9 22 47-68 31-52 (224)
380 PF08477 Miro: Miro-like prote 80.5 0.96 2.1E-05 41.0 1.7 20 53-72 2-21 (119)
381 PRK14262 phosphate ABC transpo 80.4 0.74 1.6E-05 48.2 1.1 22 47-68 26-47 (250)
382 PRK11248 tauB taurine transpor 80.4 0.69 1.5E-05 48.8 0.9 23 47-69 24-46 (255)
383 PRK14738 gmk guanylate kinase; 80.4 0.81 1.8E-05 46.7 1.3 25 49-74 12-36 (206)
384 cd03298 ABC_ThiQ_thiamine_tran 80.3 0.7 1.5E-05 47.0 0.9 22 47-68 21-42 (211)
385 PRK08118 topology modulation p 80.3 0.73 1.6E-05 45.4 0.9 15 52-66 3-17 (167)
386 PRK13540 cytochrome c biogenes 80.3 0.71 1.5E-05 46.7 0.9 23 47-69 24-46 (200)
387 TIGR00416 sms DNA repair prote 80.2 2 4.3E-05 49.4 4.6 29 47-75 91-119 (454)
388 TIGR00972 3a0107s01c2 phosphat 80.2 0.72 1.6E-05 48.2 1.0 23 47-69 24-46 (247)
389 TIGR02770 nickel_nikD nickel i 80.2 0.74 1.6E-05 47.7 1.0 22 47-68 9-30 (230)
390 cd03245 ABCC_bacteriocin_expor 80.2 0.72 1.6E-05 47.2 0.9 23 47-69 27-49 (220)
391 cd03296 ABC_CysA_sulfate_impor 80.1 0.74 1.6E-05 47.9 1.0 22 47-68 25-46 (239)
392 PRK10744 pstB phosphate transp 80.1 0.75 1.6E-05 48.6 1.0 23 47-69 36-58 (260)
393 PRK10646 ADP-binding protein; 80.1 1.1 2.3E-05 43.7 2.0 31 40-70 18-48 (153)
394 COG1125 OpuBA ABC-type proline 80.1 0.76 1.7E-05 48.1 1.0 22 47-68 24-45 (309)
395 TIGR01189 ccmA heme ABC export 80.0 0.73 1.6E-05 46.5 0.8 23 47-69 23-45 (198)
396 smart00763 AAA_PrkA PrkA AAA d 79.9 1.4 3.1E-05 48.6 3.2 19 50-68 78-96 (361)
397 cd03243 ABC_MutS_homologs The 79.8 0.77 1.7E-05 46.6 1.0 23 49-71 28-50 (202)
398 PRK06067 flagellar accessory p 79.8 2.3 4.9E-05 44.1 4.5 28 49-76 24-51 (234)
399 cd03228 ABCC_MRP_Like The MRP 79.8 0.77 1.7E-05 45.2 0.9 23 47-69 25-47 (171)
400 TIGR01184 ntrCD nitrate transp 79.7 0.79 1.7E-05 47.5 1.0 23 47-69 8-30 (230)
401 cd03215 ABC_Carb_Monos_II This 79.7 0.77 1.7E-05 45.7 0.9 22 47-68 23-44 (182)
402 PRK14273 phosphate ABC transpo 79.7 0.78 1.7E-05 48.2 1.0 23 47-69 30-52 (254)
403 PRK11124 artP arginine transpo 79.7 0.78 1.7E-05 47.8 1.0 23 47-69 25-47 (242)
404 cd03233 ABC_PDR_domain1 The pl 79.7 0.73 1.6E-05 46.7 0.7 22 47-68 30-51 (202)
405 TIGR02323 CP_lyasePhnK phospho 79.7 0.76 1.7E-05 48.2 0.9 22 47-68 26-47 (253)
406 PF02689 Herpes_Helicase: Heli 79.7 2.2 4.8E-05 50.8 4.7 45 50-106 59-103 (818)
407 PRK11247 ssuB aliphatic sulfon 79.6 0.8 1.7E-05 48.5 1.0 22 47-68 35-56 (257)
408 PF01935 DUF87: Domain of unkn 79.6 1.8 3.9E-05 44.6 3.6 53 32-95 10-62 (229)
409 cd03216 ABC_Carb_Monos_I This 79.5 0.79 1.7E-05 44.8 0.9 23 47-69 23-45 (163)
410 TIGR00041 DTMP_kinase thymidyl 79.4 0.89 1.9E-05 45.5 1.3 20 50-69 3-22 (195)
411 PRK14248 phosphate ABC transpo 79.4 0.78 1.7E-05 48.7 0.9 23 47-69 44-66 (268)
412 PTZ00301 uridine kinase; Provi 79.4 0.86 1.9E-05 46.8 1.2 17 51-67 4-20 (210)
413 PRK09087 hypothetical protein; 79.4 1.4 3E-05 45.7 2.7 22 50-71 44-65 (226)
414 PF07517 SecA_DEAD: SecA DEAD- 79.3 1 2.2E-05 47.8 1.7 102 31-143 71-179 (266)
415 cd03263 ABC_subfamily_A The AB 79.2 0.82 1.8E-05 46.8 1.0 22 47-68 25-46 (220)
416 PRK13646 cbiO cobalt transport 79.2 0.8 1.7E-05 49.2 0.9 24 47-70 30-53 (286)
417 KOG0060 Long-chain acyl-CoA tr 79.2 0.91 2E-05 52.4 1.4 21 47-67 458-478 (659)
418 cd03254 ABCC_Glucan_exporter_l 79.1 0.84 1.8E-05 47.1 1.0 22 47-68 26-47 (229)
419 COG4608 AppF ABC-type oligopep 79.1 0.88 1.9E-05 48.0 1.2 21 46-66 35-55 (268)
420 PRK11264 putative amino-acid A 79.1 0.83 1.8E-05 47.8 1.0 23 47-69 26-48 (250)
421 cd02028 UMPK_like Uridine mono 79.1 0.83 1.8E-05 45.6 0.9 18 52-69 1-18 (179)
422 COG1102 Cmk Cytidylate kinase 79.1 0.97 2.1E-05 44.1 1.3 22 52-74 2-23 (179)
423 PRK13548 hmuV hemin importer A 79.1 0.84 1.8E-05 48.2 1.0 22 47-68 25-46 (258)
424 PRK00131 aroK shikimate kinase 79.0 0.82 1.8E-05 44.5 0.8 19 49-67 3-21 (175)
425 PLN02200 adenylate kinase fami 79.0 0.9 1.9E-05 47.4 1.1 20 51-70 44-63 (234)
426 PRK09183 transposase/IS protei 78.9 1.1 2.3E-05 47.7 1.7 24 47-70 99-122 (259)
427 PRK06217 hypothetical protein; 78.8 0.85 1.8E-05 45.5 0.9 17 53-69 4-20 (183)
428 TIGR01313 therm_gnt_kin carboh 78.8 0.75 1.6E-05 44.7 0.5 16 53-68 1-16 (163)
429 PRK09361 radB DNA repair and r 78.8 1.8 3.8E-05 44.6 3.3 28 48-75 21-48 (225)
430 PRK10771 thiQ thiamine transpo 78.8 0.86 1.9E-05 47.2 1.0 22 47-68 22-43 (232)
431 PRK14532 adenylate kinase; Pro 78.8 0.87 1.9E-05 45.4 1.0 17 53-69 3-19 (188)
432 cd01383 MYSc_type_VIII Myosin 78.7 2.1 4.5E-05 51.6 4.3 37 37-73 76-118 (677)
433 TIGR01073 pcrA ATP-dependent D 78.7 2.6 5.7E-05 51.4 5.3 63 40-110 9-74 (726)
434 PRK14239 phosphate transporter 78.7 0.88 1.9E-05 47.7 1.0 23 47-69 28-50 (252)
435 PRK14237 phosphate transporter 78.6 0.86 1.9E-05 48.4 0.9 22 47-68 43-64 (267)
436 PF00625 Guanylate_kin: Guanyl 78.5 1.9 4.1E-05 42.9 3.3 23 50-72 2-24 (183)
437 PF03266 NTPase_1: NTPase; In 78.5 1.1 2.4E-05 44.2 1.6 19 53-71 2-20 (168)
438 cd03369 ABCC_NFT1 Domain 2 of 78.4 0.88 1.9E-05 46.2 0.9 23 47-69 31-53 (207)
439 PRK13632 cbiO cobalt transport 78.4 0.87 1.9E-05 48.5 0.9 22 47-68 32-53 (271)
440 TIGR00604 rad3 DNA repair heli 78.4 3.7 8.1E-05 50.0 6.4 34 41-74 20-53 (705)
441 PRK14256 phosphate ABC transpo 78.4 0.91 2E-05 47.7 1.0 23 47-69 27-49 (252)
442 TIGR02868 CydC thiol reductant 78.4 0.86 1.9E-05 53.3 0.9 23 47-69 358-380 (529)
443 TIGR03740 galliderm_ABC gallid 78.4 0.91 2E-05 46.7 1.0 22 47-68 23-44 (223)
444 cd03294 ABC_Pro_Gly_Bertaine T 78.3 0.91 2E-05 48.3 1.0 23 47-69 47-69 (269)
445 PRK14250 phosphate ABC transpo 78.3 0.92 2E-05 47.3 1.0 22 47-68 26-47 (241)
446 PF10412 TrwB_AAD_bind: Type I 78.3 1.5 3.2E-05 49.4 2.7 41 49-96 14-54 (386)
447 PRK14269 phosphate ABC transpo 78.3 0.9 1.9E-05 47.5 0.9 22 47-68 25-46 (246)
448 COG1199 DinG Rad3-related DNA 78.3 3.2 7E-05 50.0 5.8 50 42-97 26-75 (654)
449 PRK09825 idnK D-gluconate kina 78.2 1.1 2.4E-05 44.6 1.5 22 49-70 2-23 (176)
450 cd03249 ABC_MTABC3_MDL1_MDL2 M 78.2 0.96 2.1E-05 47.0 1.1 23 47-69 26-48 (238)
451 PF05127 Helicase_RecD: Helica 78.2 0.61 1.3E-05 46.5 -0.4 110 54-181 1-124 (177)
452 PRK00091 miaA tRNA delta(2)-is 78.2 0.97 2.1E-05 49.1 1.2 19 50-68 4-22 (307)
453 cd01377 MYSc_type_II Myosin mo 78.2 2 4.4E-05 51.9 4.0 39 36-74 74-118 (693)
454 cd03234 ABCG_White The White s 78.2 0.88 1.9E-05 46.9 0.8 23 47-69 30-52 (226)
455 PRK03839 putative kinase; Prov 78.2 0.96 2.1E-05 44.8 1.1 18 52-69 2-19 (180)
456 PRK14240 phosphate transporter 78.2 0.93 2E-05 47.5 1.0 22 47-68 26-47 (250)
457 cd01672 TMPK Thymidine monopho 78.1 1 2.2E-05 44.7 1.3 19 52-70 2-20 (200)
458 cd01380 MYSc_type_V Myosin mot 78.1 2.2 4.7E-05 51.7 4.2 43 32-74 63-113 (691)
459 PRK14244 phosphate ABC transpo 78.1 0.92 2E-05 47.6 0.9 22 47-68 28-49 (251)
460 PRK13648 cbiO cobalt transport 78.0 0.94 2E-05 48.1 1.0 21 47-67 32-52 (269)
461 cd02027 APSK Adenosine 5'-phos 77.9 0.93 2E-05 43.7 0.8 18 52-69 1-18 (149)
462 cd03213 ABCG_EPDR ABCG transpo 77.9 0.93 2E-05 45.7 0.9 23 47-69 32-54 (194)
463 PRK14259 phosphate ABC transpo 77.9 0.95 2.1E-05 48.2 1.0 23 47-69 36-58 (269)
464 PRK13638 cbiO cobalt transport 77.9 0.93 2E-05 48.2 0.9 22 47-68 24-45 (271)
465 cd03295 ABC_OpuCA_Osmoprotecti 77.8 0.94 2E-05 47.2 0.9 22 47-68 24-45 (242)
466 PRK09493 glnQ glutamine ABC tr 77.7 0.97 2.1E-05 47.0 1.0 23 47-69 24-46 (240)
467 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 77.7 0.95 2.1E-05 46.7 0.9 23 47-69 45-67 (224)
468 cd03252 ABCC_Hemolysin The ABC 77.7 0.98 2.1E-05 46.9 1.0 22 47-68 25-46 (237)
469 PRK13645 cbiO cobalt transport 77.7 0.9 1.9E-05 48.8 0.7 23 47-69 34-56 (289)
470 PRK03695 vitamin B12-transport 77.7 0.95 2.1E-05 47.5 0.9 22 47-68 19-40 (248)
471 cd03290 ABCC_SUR1_N The SUR do 77.7 0.99 2.1E-05 46.2 1.0 22 47-68 24-45 (218)
472 cd03253 ABCC_ATM1_transporter 77.6 0.96 2.1E-05 46.9 0.9 23 47-69 24-46 (236)
473 PRK11300 livG leucine/isoleuci 77.6 0.95 2.1E-05 47.5 0.9 22 47-68 28-49 (255)
474 cd03250 ABCC_MRP_domain1 Domai 77.6 0.97 2.1E-05 45.8 0.9 22 47-68 28-49 (204)
475 cd01428 ADK Adenylate kinase ( 77.6 0.98 2.1E-05 45.0 0.9 17 53-69 2-18 (194)
476 cd03267 ABC_NatA_like Similar 77.5 1 2.2E-05 46.9 1.0 23 47-69 44-66 (236)
477 PF01926 MMR_HSR1: 50S ribosom 77.5 1.1 2.4E-05 40.8 1.2 19 53-71 2-20 (116)
478 PRK13547 hmuV hemin importer A 77.5 0.99 2.1E-05 48.2 1.0 22 47-68 24-45 (272)
479 PRK06526 transposase; Provisio 77.5 1.1 2.4E-05 47.4 1.3 24 45-68 93-116 (254)
480 PRK09544 znuC high-affinity zi 77.5 0.97 2.1E-05 47.6 0.9 23 47-69 27-49 (251)
481 PRK13975 thymidylate kinase; P 77.5 1.1 2.3E-05 45.0 1.2 20 50-69 2-21 (196)
482 PRK15056 manganese/iron transp 77.4 0.97 2.1E-05 48.1 0.9 22 47-68 30-51 (272)
483 COG0419 SbcC ATPase involved i 77.4 1.1 2.5E-05 56.0 1.6 26 47-72 22-47 (908)
484 PRK10253 iron-enterobactin tra 77.4 0.97 2.1E-05 47.9 0.9 22 47-68 30-51 (265)
485 PRK14274 phosphate ABC transpo 77.3 0.99 2.1E-05 47.6 0.9 22 47-68 35-56 (259)
486 PRK14255 phosphate ABC transpo 77.3 1 2.2E-05 47.2 1.0 22 47-68 28-49 (252)
487 cd04163 Era Era subfamily. Er 77.3 1.4 3E-05 41.7 1.9 21 51-71 4-24 (168)
488 PRK11614 livF leucine/isoleuci 77.3 1 2.2E-05 46.8 0.9 22 47-68 28-49 (237)
489 PF00158 Sigma54_activat: Sigm 77.3 3.7 7.9E-05 40.6 4.9 36 39-75 11-46 (168)
490 PRK14267 phosphate ABC transpo 77.2 1 2.2E-05 47.3 1.0 22 47-68 27-48 (253)
491 cd03251 ABCC_MsbA MsbA is an e 77.2 1 2.2E-05 46.6 1.0 22 47-68 25-46 (234)
492 COG3842 PotA ABC-type spermidi 77.2 1.1 2.3E-05 49.6 1.1 22 47-68 28-49 (352)
493 TIGR03880 KaiC_arch_3 KaiC dom 77.2 1.9 4.1E-05 44.3 3.0 27 49-75 15-41 (224)
494 PRK13649 cbiO cobalt transport 77.2 1 2.2E-05 48.2 0.9 22 47-68 30-51 (280)
495 cd02021 GntK Gluconate kinase 77.1 1 2.3E-05 43.0 0.9 18 52-69 1-18 (150)
496 PLN03187 meiotic recombination 77.1 2.9 6.2E-05 46.3 4.4 28 48-75 124-151 (344)
497 TIGR01351 adk adenylate kinase 77.1 1 2.2E-05 45.9 0.9 18 53-70 2-19 (210)
498 PRK14528 adenylate kinase; Pro 77.1 1.1 2.4E-05 44.9 1.2 18 52-69 3-20 (186)
499 PRK14241 phosphate transporter 77.0 1 2.2E-05 47.5 0.9 23 47-69 27-49 (258)
500 PRK04040 adenylate kinase; Pro 77.0 1.5 3.2E-05 44.2 2.1 21 51-71 3-23 (188)
No 1
>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.9e-136 Score=1131.73 Aligned_cols=522 Identities=43% Similarity=0.671 Sum_probs=485.2
Q ss_pred CChhHHHhhhcCCCchhhHHHHHHHHHcCCeEEEEecCCCCccccHHHHHHHhccCCCCCCCCCceEEEecccHHHHHHH
Q 038192 22 SRPNEVENNRKDLPIVMMEQEIMEAVNDNSAVIICGETGCGKTTQVPQFLFEAGFGSNRCSSRSGRIGVTQPRRVAVLAT 101 (764)
Q Consensus 22 ~~~~~~~~~R~~LPi~~~~~~Il~~l~~~~vviI~GeTGSGKTTqvPq~Lle~~~~~~~~~~~~~~Ii~tQPRRiaAisv 101 (764)
.....++++|+.|||++++++|++++++|||+||.|||||||||||||||+|++|... ++|.||||||+||++|
T Consensus 38 ~~~~~i~~qR~~LPI~~~r~~il~~ve~nqvlIviGeTGsGKSTQipQyL~eaG~~~~------g~I~~TQPRRVAavsl 111 (674)
T KOG0922|consen 38 STNLSIQEQRESLPIYKYRDQILYAVEDNQVLIVIGETGSGKSTQIPQYLAEAGFASS------GKIACTQPRRVAAVSL 111 (674)
T ss_pred ccccCHHHhhccCCHHHHHHHHHHHHHHCCEEEEEcCCCCCccccHhHHHHhcccccC------CcEEeecCchHHHHHH
Confidence 4456799999999999999999999999999999999999999999999999999865 4799999999999999
Q ss_pred HHHHHHHhCCCCCCEeeEEeccCcccCCCceEEEEchHHHHHHHHH----------HHHHHHH-----HHhhccccCCcc
Q 038192 102 AKRVAFELGLHLGKEVGFQVRHDKKIGDSCSIKFMTDGILLRELKA----------LYEKQQQ-----LLRSGQCIEPKD 166 (764)
Q Consensus 102 A~RVa~E~g~~lG~~VGY~ir~e~~~s~~t~I~f~T~GiLLr~l~~----------i~de~~~-----~l~~~~~~~~~~ 166 (764)
|+|||+|+|+.+|+.|||+||||+++++.|+|+|+|+|+|||++.. ++||+|+ +++.|+++.+.+
T Consensus 112 A~RVAeE~~~~lG~~VGY~IRFed~ts~~TrikymTDG~LLRE~l~Dp~LskYsvIIlDEAHERsl~TDiLlGlLKki~~ 191 (674)
T KOG0922|consen 112 AKRVAEEMGCQLGEEVGYTIRFEDSTSKDTRIKYMTDGMLLREILKDPLLSKYSVIILDEAHERSLHTDILLGLLKKILK 191 (674)
T ss_pred HHHHHHHhCCCcCceeeeEEEecccCCCceeEEEecchHHHHHHhcCCccccccEEEEechhhhhhHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999953 5688763 678888888888
Q ss_pred CCCCceEEEeecccchhhhccccCCCCCCCeeeeCCcccceeEEecCCCchhhHHHHHHHHHHHHhhcCCCCCeEEecCC
Q 038192 167 RVFPLKLILMSATLRVEDFISGGRLFRNPPIIEVPTRQFPVTVHFSKRTEIVDYIGQAYKKVMSIHKRLPQGGILVFVTG 246 (764)
Q Consensus 167 ~~~~lKlILMSATl~~~~f~~~~~~f~~~~vi~i~gr~~pV~~~y~~~~~~~d~l~~~~~~v~~i~~~~~~g~ilvF~~g 246 (764)
++++||||+||||+|+++|+ .||++||++.||||+|||+++|++... .||+.+++..+++||.++++||||||+||
T Consensus 192 ~R~~LklIimSATlda~kfS---~yF~~a~i~~i~GR~fPVei~y~~~p~-~dYv~a~~~tv~~Ih~~E~~GDILvFLtG 267 (674)
T KOG0922|consen 192 KRPDLKLIIMSATLDAEKFS---EYFNNAPILTIPGRTFPVEILYLKEPT-ADYVDAALITVIQIHLTEPPGDILVFLTG 267 (674)
T ss_pred cCCCceEEEEeeeecHHHHH---HHhcCCceEeecCCCCceeEEeccCCc-hhhHHHHHHHHHHHHccCCCCCEEEEeCC
Confidence 99999999999999999999 699999999999999999999999776 89999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhhccccccCCccccCCCCCccccchhHHhHHHHHhhcCcccccccccCCCCCcccccCccc
Q 038192 247 QREVEYLCSKLRKASKQLLVNSSKENKGNQVVADSEPNATKDINMKEINEAFEIQGYSTEQQTDRFSSYDEDQFDIDDNE 326 (764)
Q Consensus 247 ~~~ie~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~ 326 (764)
++|||.+|+.|++..+..
T Consensus 268 qeEIe~~~~~l~e~~~~~-------------------------------------------------------------- 285 (674)
T KOG0922|consen 268 QEEIEAACELLRERAKSL-------------------------------------------------------------- 285 (674)
T ss_pred HHHHHHHHHHHHHHhhhc--------------------------------------------------------------
Confidence 999999999997632100
Q ss_pred cccccCccchhhhhhccchhhhhhhcCCCCCCCCcccccccchhhhhHHHHHHhhcCCCCCCCccccCCCCCCCCcCCCC
Q 038192 327 LDALSDSETESETEILGEDEKLVEQKCPMDGDDPVDVLKENWSLGSLKLAFEVLSGKNASGPSSQMKLSTPAIPEQCTEL 406 (764)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilvfl~g~~~i~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (764)
++
T Consensus 286 -------------------------------------------------------------------------~~----- 287 (674)
T KOG0922|consen 286 -------------------------------------------------------------------------PE----- 287 (674)
T ss_pred -------------------------------------------------------------------------cc-----
Confidence 00
Q ss_pred CCCCCCCCCCCCCCCccccccCcccCCCCCeEEEecCCCCCHHHHHhhhccCCCCceEEEEecCcccccCCCCCeEEEEe
Q 038192 407 PPTPTPEQCPELSSPDVEKMGDNKRAGVGALCVLPLYAMLPAAAQLRVFEDVKEGERLVVVSTNVAETSLTIPGIKYVVD 486 (764)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~pLHs~l~~~eQ~~vf~~~~~g~rKVIlsTNIAEtSITIpdV~~VID 486 (764)
+.+. .++|+||.|+.++|.+||.+.|+|.|||||||||||||||||+|+||||
T Consensus 288 --------------------------~~~~-~~lply~aL~~e~Q~rvF~p~p~g~RKvIlsTNIAETSlTI~GI~YVVD 340 (674)
T KOG0922|consen 288 --------------------------DCPE-LILPLYGALPSEEQSRVFDPAPPGKRKVILSTNIAETSLTIDGIRYVVD 340 (674)
T ss_pred --------------------------cCcc-eeeeecccCCHHHhhccccCCCCCcceEEEEcceeeeeEEecceEEEEc
Confidence 1122 7999999999999999999999999999999999999999999999999
Q ss_pred CCcccceeeccCCCccccceeeccHHhHHHhccccCCCCCCEEEEccCHHHhcccCCCCCCCcccccChhhHHHHHHHcC
Q 038192 487 TGREKVKKYNSANGIESYEIQWISKASAAQRAGRAGRTAPGHCYRLYSSAVFNNILPDFSCAEISKVPVDGVVLLMKSMN 566 (764)
Q Consensus 487 ~G~~K~~~yd~~~~~~~l~~~~iSkasa~QR~GRAGR~~~G~cyrLys~~~~~~~l~~~~~PEI~r~~L~~~~L~lk~l~ 566 (764)
+|++|++.|||.+++++|..+|||||+|+||+|||||++||+||||||+.+|+ .|++.+.|||+|++|..++|++|++|
T Consensus 341 sG~vK~~~y~p~~g~~~L~v~~ISkasA~QRaGRAGRt~pGkcyRLYte~~~~-~~~~~~~PEI~R~~Ls~~vL~Lkalg 419 (674)
T KOG0922|consen 341 SGFVKQKKYNPRTGLDSLIVVPISKASANQRAGRAGRTGPGKCYRLYTESAYD-KMPLQTVPEIQRVNLSSAVLQLKALG 419 (674)
T ss_pred CCceEEEeeccccCccceeEEechHHHHhhhcccCCCCCCceEEEeeeHHHHh-hcccCCCCceeeechHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999995 59999999999999999999999999
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHcccccCCCCccH-HHHHHhcCCCChHHHHHHHHHHhhhhhhhhhhhccchhhh
Q 038192 567 IDKVSNFPFPTPPEVTALVEAERCLKALEALDSNGRLTA-LGKAMAHYPMSPRHSRMLLTLIQTMKVKSYARANLVLGYG 645 (764)
Q Consensus 567 ~~~~~~f~~~~pP~~~~i~~ai~~L~~lgAld~~~~LT~-LG~~la~LPvdp~lgkmLl~~~~~~~~~~~~~~~~~l~~~ 645 (764)
++++..|+|+|||+++++..|++.|+.+||||++|.||. +|+.|+.||++|.++|||+.+..+ +|+..+
T Consensus 420 i~d~l~F~f~d~P~~~~l~~AL~~L~~lgald~~g~lt~p~G~~ma~~Pl~p~lsk~ll~s~~~----------gc~~e~ 489 (674)
T KOG0922|consen 420 INDPLRFPFIDPPPPEALEEALEELYSLGALDDRGKLTSPLGRQMAELPLEPHLSKMLLKSSEL----------GCSEEI 489 (674)
T ss_pred CCCcccCCCCCCCChHHHHHHHHHHHhcCcccCcCCcCchHHhhhhhcCCCcchhhhhhhcccc----------CCcchh
Confidence 999999999999999999999999999999999999998 999999999999999999987542 588889
Q ss_pred HHhhhcccCCcceeeccccccCCCCCchhhhhcccCCCCChhhHHHHhhhhhHHHHHHHHHhhcCCCCCcHHHHHHHHHH
Q 038192 646 VAAAAALSVSNPFVLQLEGTQTNSNDSELEERDNALDSEDPMCRQEKLGKRKLKEVAKLSHAKFSNPTSDVLTVAYALQC 725 (764)
Q Consensus 646 ~~iaA~ls~~~~F~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~f~~~~sD~lt~ln~~~~ 725 (764)
++|||+||++++|..|.+.. .+.++..|++|.++.|||+|+||+|..
T Consensus 490 l~i~a~Lsv~~~f~~p~~~~---------------------------------~~~a~~~~~kf~~~eGDh~tlL~vy~~ 536 (674)
T KOG0922|consen 490 LTIAAMLSVQSVFSRPKDKK---------------------------------AEDADRKRAKFANPEGDHLTLLNVYES 536 (674)
T ss_pred hhheeeeeccceecCccchh---------------------------------hhhhhHHHHhhcCcccCHHHHHHHHHH
Confidence 99999999999999875321 124677899999999999999999999
Q ss_pred HHhcCCcHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcC
Q 038192 726 FELSKSPVEFCNEYALHLKTMEEMSKLRKQLLHLLFNQN 764 (764)
Q Consensus 726 ~~~~~~~~~~C~~~~l~~~~l~~i~~ir~QL~~~l~~~g 764 (764)
|..++...+||++||+|++.|+.+.++|+||.+++..++
T Consensus 537 ~~~~~~~~~wC~en~i~~r~l~~a~~ir~QL~~i~~~~~ 575 (674)
T KOG0922|consen 537 WKENGTSKKWCKENFINARSLKRAKDIRKQLRRILDKFG 575 (674)
T ss_pred HHhcCChhhHHHHhcccHHHHHHHHHHHHHHHHHHHHcC
Confidence 999999999999999999999999999999999997654
No 2
>KOG0923 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.2e-135 Score=1108.67 Aligned_cols=522 Identities=39% Similarity=0.651 Sum_probs=481.6
Q ss_pred ChhHHHhhhcCCCchhhHHHHHHHHHcCCeEEEEecCCCCccccHHHHHHHhccCCCCCCCCCceEEEecccHHHHHHHH
Q 038192 23 RPNEVENNRKDLPIVMMEQEIMEAVNDNSAVIICGETGCGKTTQVPQFLFEAGFGSNRCSSRSGRIGVTQPRRVAVLATA 102 (764)
Q Consensus 23 ~~~~~~~~R~~LPi~~~~~~Il~~l~~~~vviI~GeTGSGKTTqvPq~Lle~~~~~~~~~~~~~~Ii~tQPRRiaAisvA 102 (764)
+-.++++.|+.||||.+|++++.+|+.|||+||.|+||||||||+||||+|.|+..++ .+|.||||||+||+|||
T Consensus 253 ~~~~iee~RksLPVy~ykdell~av~e~QVLiI~GeTGSGKTTQiPQyL~EaGytk~g-----k~IgcTQPRRVAAmSVA 327 (902)
T KOG0923|consen 253 RRESIEEVRKSLPVYPYKDELLKAVKEHQVLIIVGETGSGKTTQIPQYLYEAGYTKGG-----KKIGCTQPRRVAAMSVA 327 (902)
T ss_pred HHHHHHHHHhcCCchhhHHHHHHHHHhCcEEEEEcCCCCCccccccHHHHhcccccCC-----ceEeecCcchHHHHHHH
Confidence 4467899999999999999999999999999999999999999999999999998764 46999999999999999
Q ss_pred HHHHHHhCCCCCCEeeEEeccCcccCCCceEEEEchHHHHHHHHH----------HHHHHHH-----HHhhccccCCccC
Q 038192 103 KRVAFELGLHLGKEVGFQVRHDKKIGDSCSIKFMTDGILLRELKA----------LYEKQQQ-----LLRSGQCIEPKDR 167 (764)
Q Consensus 103 ~RVa~E~g~~lG~~VGY~ir~e~~~s~~t~I~f~T~GiLLr~l~~----------i~de~~~-----~l~~~~~~~~~~~ 167 (764)
.|||+|||+++|..|||+||||++++++|.|+|||+|||||+++. ++||+|+ +|+.|+...+.+-
T Consensus 328 aRVA~EMgvkLG~eVGYsIRFEdcTSekTvlKYMTDGmLlREfL~epdLasYSViiiDEAHERTL~TDILfgLvKDIar~ 407 (902)
T KOG0923|consen 328 ARVAEEMGVKLGHEVGYSIRFEDCTSEKTVLKYMTDGMLLREFLSEPDLASYSVIIVDEAHERTLHTDILFGLVKDIARF 407 (902)
T ss_pred HHHHHHhCcccccccceEEEeccccCcceeeeeecchhHHHHHhccccccceeEEEeehhhhhhhhhhHHHHHHHHHHhh
Confidence 999999999999999999999999999999999999999999964 5688763 5777777788888
Q ss_pred CCCceEEEeecccchhhhccccCCCCCCCeeeeCCcccceeEEecCCCchhhHHHHHHHHHHHHhhcCCCCCeEEecCCH
Q 038192 168 VFPLKLILMSATLRVEDFISGGRLFRNPPIIEVPTRQFPVTVHFSKRTEIVDYIGQAYKKVMSIHKRLPQGGILVFVTGQ 247 (764)
Q Consensus 168 ~~~lKlILMSATl~~~~f~~~~~~f~~~~vi~i~gr~~pV~~~y~~~~~~~d~l~~~~~~v~~i~~~~~~g~ilvF~~g~ 247 (764)
+|+|||++||||+|+++|+ .||+++|++.||||.|||++||.+.++ -||+++++..|++||.+.|.||||||++|+
T Consensus 408 RpdLKllIsSAT~DAekFS---~fFDdapIF~iPGRRyPVdi~Yt~~PE-AdYldAai~tVlqIH~tqp~GDILVFltGQ 483 (902)
T KOG0923|consen 408 RPDLKLLISSATMDAEKFS---AFFDDAPIFRIPGRRYPVDIFYTKAPE-ADYLDAAIVTVLQIHLTQPLGDILVFLTGQ 483 (902)
T ss_pred CCcceEEeeccccCHHHHH---HhccCCcEEeccCcccceeeecccCCc-hhHHHHHHhhheeeEeccCCccEEEEeccH
Confidence 8999999999999999999 699999999999999999999999988 899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhhccccccCCccccCCCCCccccchhHHhHHHHHhhcCcccccccccCCCCCcccccCcccc
Q 038192 248 REVEYLCSKLRKASKQLLVNSSKENKGNQVVADSEPNATKDINMKEINEAFEIQGYSTEQQTDRFSSYDEDQFDIDDNEL 327 (764)
Q Consensus 248 ~~ie~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~ 327 (764)
+++|-+++.|....+.+ |
T Consensus 484 eEIEt~~e~l~~~~~~L---------G----------------------------------------------------- 501 (902)
T KOG0923|consen 484 EEIETVKENLKERCRRL---------G----------------------------------------------------- 501 (902)
T ss_pred HHHHHHHHHHHHHHHHh---------c-----------------------------------------------------
Confidence 99998887776532211 0
Q ss_pred ccccCccchhhhhhccchhhhhhhcCCCCCCCCcccccccchhhhhHHHHHHhhcCCCCCCCccccCCCCCCCCcCCCCC
Q 038192 328 DALSDSETESETEILGEDEKLVEQKCPMDGDDPVDVLKENWSLGSLKLAFEVLSGKNASGPSSQMKLSTPAIPEQCTELP 407 (764)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilvfl~g~~~i~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 407 (764)
T Consensus 502 -------------------------------------------------------------------------------- 501 (902)
T KOG0923|consen 502 -------------------------------------------------------------------------------- 501 (902)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCCCCCCCccccccCcccCCCCCeEEEecCCCCCHHHHHhhhccCCCCceEEEEecCcccccCCCCCeEEEEeC
Q 038192 408 PTPTPEQCPELSSPDVEKMGDNKRAGVGALCVLPLYAMLPAAAQLRVFEDVKEGERLVVVSTNVAETSLTIPGIKYVVDT 487 (764)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~pLHs~l~~~eQ~~vf~~~~~g~rKVIlsTNIAEtSITIpdV~~VID~ 487 (764)
+....+.|+|+|++||++.|.+||+|.|+|.|||||||||||||||||||.||||+
T Consensus 502 ------------------------ski~eliv~PiYaNLPselQakIFePtP~gaRKVVLATNIAETSlTIdgI~yViDp 557 (902)
T KOG0923|consen 502 ------------------------SKIRELIVLPIYANLPSELQAKIFEPTPPGARKVVLATNIAETSLTIDGIKYVIDP 557 (902)
T ss_pred ------------------------cccceEEEeeccccCChHHHHhhcCCCCCCceeEEEeecchhhceeecCeEEEecC
Confidence 01135889999999999999999999999999999999999999999999999999
Q ss_pred CcccceeeccCCCccccceeeccHHhHHHhccccCCCCCCEEEEccCHHHhcccCCCCCCCcccccChhhHHHHHHHcCC
Q 038192 488 GREKVKKYNSANGIESYEIQWISKASAAQRAGRAGRTAPGHCYRLYSSAVFNNILPDFSCAEISKVPVDGVVLLMKSMNI 567 (764)
Q Consensus 488 G~~K~~~yd~~~~~~~l~~~~iSkasa~QR~GRAGR~~~G~cyrLys~~~~~~~l~~~~~PEI~r~~L~~~~L~lk~l~~ 567 (764)
|++|++.|||++||.+|..+|||||||.||+|||||++||+||||||...|.+.+++.+.|||+|+||.+++|.+|+|||
T Consensus 558 Gf~K~nsynprtGmesL~v~piSKAsA~QRaGRAGRtgPGKCfRLYt~~aY~~eLE~~t~PEIqRtnL~nvVL~LkSLGI 637 (902)
T KOG0923|consen 558 GFVKQNSYNPRTGMESLLVTPISKASANQRAGRAGRTGPGKCFRLYTAWAYEHELEEMTVPEIQRTNLGNVVLLLKSLGI 637 (902)
T ss_pred ccccccCcCCCcCceeEEEeeechhhhhhhccccCCCCCCceEEeechhhhhhhhccCCCcceeeccchhHHHHHHhcCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHcccccCCCCccHHHHHHhcCCCChHHHHHHHHHHhhhhhhhhhhhccchhhhHH
Q 038192 568 DKVSNFPFPTPPEVTALVEAERCLKALEALDSNGRLTALGKAMAHYPMSPRHSRMLLTLIQTMKVKSYARANLVLGYGVA 647 (764)
Q Consensus 568 ~~~~~f~~~~pP~~~~i~~ai~~L~~lgAld~~~~LT~LG~~la~LPvdp~lgkmLl~~~~~~~~~~~~~~~~~l~~~~~ 647 (764)
.++.+|+|+|||+.+++..|++.|++||||+..|.||.+|+.||+||+||.++|||+.+-. +. |-..+++
T Consensus 638 ~Dl~~FdFmDpPp~etL~~aLE~LyaLGALn~~GeLTk~GrrMaEfP~dPmlsKmi~as~k------y~----cs~Eiit 707 (902)
T KOG0923|consen 638 HDLIHFDFLDPPPTETLLKALEQLYALGALNHLGELTKLGRRMAEFPVDPMLSKMIVASEK------YK----CSEEIIT 707 (902)
T ss_pred chhcccccCCCCChHHHHHHHHHHHHhhccccccchhhhhhhhhhcCCCHHHHhHHhhhcc------cc----chHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999997643 33 5566789
Q ss_pred hhhcccCC-cceeeccccccCCCCCchhhhhcccCCCCChhhHHHHhhhhhHHHHHHHHHhhcCCCCCcHHHHHHHHHHH
Q 038192 648 AAAALSVS-NPFVLQLEGTQTNSNDSELEERDNALDSEDPMCRQEKLGKRKLKEVAKLSHAKFSNPTSDVLTVAYALQCF 726 (764)
Q Consensus 648 iaA~ls~~-~~F~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~f~~~~sD~lt~ln~~~~~ 726 (764)
||||||+. ++|..|.+. .--++.+++.|..+.|||+++|++|+.|
T Consensus 708 iaamlS~~~svfyrpk~~----------------------------------~v~ad~a~~~f~~~~gDhi~~L~vyn~w 753 (902)
T KOG0923|consen 708 IAAMLSVGASVFYRPKDK----------------------------------QVHADNARKNFEEPVGDHIVLLNVYNQW 753 (902)
T ss_pred HHHHHhcCchheecchhh----------------------------------hhhhhhhhhccCCCCcchhhhhHHHHHH
Confidence 99999995 688876321 1235678889999999999999999999
Q ss_pred HhcCCcHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhc
Q 038192 727 ELSKSPVEFCNEYALHLKTMEEMSKLRKQLLHLLFNQ 763 (764)
Q Consensus 727 ~~~~~~~~~C~~~~l~~~~l~~i~~ir~QL~~~l~~~ 763 (764)
..++.+.+||.+||+.+++|+.++++|.||..+|...
T Consensus 754 ~es~~s~~wC~e~~iq~~sm~rardir~qL~gll~~v 790 (902)
T KOG0923|consen 754 KESKYSTQWCYENFIQYRSMKRARDIRDQLEGLLERV 790 (902)
T ss_pred hhcchhhHHHHHhhhhHHHHHHHHHHHHHHHHHhhhc
Confidence 9999999999999999999999999999999998754
No 3
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.2e-132 Score=1086.91 Aligned_cols=524 Identities=39% Similarity=0.645 Sum_probs=487.4
Q ss_pred CChhHHHhhhcCCCchhhHHHHHHHHHcCCeEEEEecCCCCccccHHHHHHHhccCCCCCCCCCceEEEecccHHHHHHH
Q 038192 22 SRPNEVENNRKDLPIVMMEQEIMEAVNDNSAVIICGETGCGKTTQVPQFLFEAGFGSNRCSSRSGRIGVTQPRRVAVLAT 101 (764)
Q Consensus 22 ~~~~~~~~~R~~LPi~~~~~~Il~~l~~~~vviI~GeTGSGKTTqvPq~Lle~~~~~~~~~~~~~~Ii~tQPRRiaAisv 101 (764)
.....+.++|+.|||+.+|+++++.|+.|+||||.||||||||||+||||||++++.+ +.|.||||||+||++|
T Consensus 343 a~~k~i~eqrq~LPvf~~R~~ll~~ir~n~vvvivgETGSGKTTQl~QyL~edGY~~~------GmIGcTQPRRvAAiSV 416 (1042)
T KOG0924|consen 343 ASKKSIREQRQYLPVFACRDQLLSVIRENQVVVIVGETGSGKTTQLAQYLYEDGYADN------GMIGCTQPRRVAAISV 416 (1042)
T ss_pred cccchHHHHHhhcchHHHHHHHHHHHhhCcEEEEEecCCCCchhhhHHHHHhcccccC------CeeeecCchHHHHHHH
Confidence 3334589999999999999999999999999999999999999999999999999865 5999999999999999
Q ss_pred HHHHHHHhCCCCCCEeeEEeccCcccCCCceEEEEchHHHHHHHHH----------HHHHHHH-----HHhhccccCCcc
Q 038192 102 AKRVAFELGLHLGKEVGFQVRHDKKIGDSCSIKFMTDGILLRELKA----------LYEKQQQ-----LLRSGQCIEPKD 166 (764)
Q Consensus 102 A~RVa~E~g~~lG~~VGY~ir~e~~~s~~t~I~f~T~GiLLr~l~~----------i~de~~~-----~l~~~~~~~~~~ 166 (764)
|+|||.|||..+|.+|||.||||+.+++.|.|.|||+|||||+... |+||+|+ +++.|++..+..
T Consensus 417 AkrVa~EM~~~lG~~VGYsIRFEdvT~~~T~IkymTDGiLLrEsL~d~~L~kYSviImDEAHERslNtDilfGllk~~la 496 (1042)
T KOG0924|consen 417 AKRVAEEMGVTLGDTVGYSIRFEDVTSEDTKIKYMTDGILLRESLKDRDLDKYSVIIMDEAHERSLNTDILFGLLKKVLA 496 (1042)
T ss_pred HHHHHHHhCCccccccceEEEeeecCCCceeEEEeccchHHHHHhhhhhhhheeEEEechhhhcccchHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999832 5688874 577888888888
Q ss_pred CCCCceEEEeecccchhhhccccCCCCCCCeeeeCCcccceeEEecCCCchhhHHHHHHHHHHHHhhcCCCCCeEEecCC
Q 038192 167 RVFPLKLILMSATLRVEDFISGGRLFRNPPIIEVPTRQFPVTVHFSKRTEIVDYIGQAYKKVMSIHKRLPQGGILVFVTG 246 (764)
Q Consensus 167 ~~~~lKlILMSATl~~~~f~~~~~~f~~~~vi~i~gr~~pV~~~y~~~~~~~d~l~~~~~~v~~i~~~~~~g~ilvF~~g 246 (764)
++.|||||+||||||+++|. +|||+||.+.||||+|||++.|.+.+. +||++.++++.++||...++|+||||+||
T Consensus 497 rRrdlKliVtSATm~a~kf~---nfFgn~p~f~IpGRTyPV~~~~~k~p~-eDYVeaavkq~v~Ihl~~~~GdilIfmtG 572 (1042)
T KOG0924|consen 497 RRRDLKLIVTSATMDAQKFS---NFFGNCPQFTIPGRTYPVEIMYTKTPV-EDYVEAAVKQAVQIHLSGPPGDILIFMTG 572 (1042)
T ss_pred hhccceEEEeeccccHHHHH---HHhCCCceeeecCCccceEEEeccCch-HHHHHHHHhhheEeeccCCCCCEEEecCC
Confidence 88999999999999999999 799999999999999999999998776 99999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhhccccccCCccccCCCCCccccchhHHhHHHHHhhcCcccccccccCCCCCcccccCccc
Q 038192 247 QREVEYLCSKLRKASKQLLVNSSKENKGNQVVADSEPNATKDINMKEINEAFEIQGYSTEQQTDRFSSYDEDQFDIDDNE 326 (764)
Q Consensus 247 ~~~ie~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~ 326 (764)
++++|..|..+.....++
T Consensus 573 qediE~t~~~i~~~l~ql-------------------------------------------------------------- 590 (1042)
T KOG0924|consen 573 QEDIECTCDIIKEKLEQL-------------------------------------------------------------- 590 (1042)
T ss_pred CcchhHHHHHHHHHHHhh--------------------------------------------------------------
Confidence 999998887775422111
Q ss_pred cccccCccchhhhhhccchhhhhhhcCCCCCCCCcccccccchhhhhHHHHHHhhcCCCCCCCccccCCCCCCCCcCCCC
Q 038192 327 LDALSDSETESETEILGEDEKLVEQKCPMDGDDPVDVLKENWSLGSLKLAFEVLSGKNASGPSSQMKLSTPAIPEQCTEL 406 (764)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilvfl~g~~~i~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (764)
+
T Consensus 591 -~------------------------------------------------------------------------------ 591 (1042)
T KOG0924|consen 591 -D------------------------------------------------------------------------------ 591 (1042)
T ss_pred -h------------------------------------------------------------------------------
Confidence 0
Q ss_pred CCCCCCCCCCCCCCCccccccCcccCCCCCeEEEecCCCCCHHHHHhhhccCCCCceEEEEecCcccccCCCCCeEEEEe
Q 038192 407 PPTPTPEQCPELSSPDVEKMGDNKRAGVGALCVLPLYAMLPAAAQLRVFEDVKEGERLVVVSTNVAETSLTIPGIKYVVD 486 (764)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~pLHs~l~~~eQ~~vf~~~~~g~rKVIlsTNIAEtSITIpdV~~VID 486 (764)
.+....+.|+|+||.||.+-|.++|++.+.|.|||||||||||||||||+|.||||
T Consensus 592 ------------------------~~~~~~L~vlpiYSQLp~dlQ~kiFq~a~~~vRK~IvATNIAETSLTi~gI~yVID 647 (1042)
T KOG0924|consen 592 ------------------------SAPTTDLAVLPIYSQLPADLQAKIFQKAEGGVRKCIVATNIAETSLTIPGIRYVID 647 (1042)
T ss_pred ------------------------cCCCCceEEEeehhhCchhhhhhhcccCCCCceeEEEeccchhhceeecceEEEEe
Confidence 00013588999999999999999999999999999999999999999999999999
Q ss_pred CCcccceeeccCCCccccceeeccHHhHHHhccccCCCCCCEEEEccCHHHhcccCCCCCCCcccccChhhHHHHHHHcC
Q 038192 487 TGREKVKKYNSANGIESYEIQWISKASAAQRAGRAGRTAPGHCYRLYSSAVFNNILPDFSCAEISKVPVDGVVLLMKSMN 566 (764)
Q Consensus 487 ~G~~K~~~yd~~~~~~~l~~~~iSkasa~QR~GRAGR~~~G~cyrLys~~~~~~~l~~~~~PEI~r~~L~~~~L~lk~l~ 566 (764)
||+.|.+.||+..|++.|++.|||||+|.||+|||||++||+||||||+..|.+.|-+.++|||+|++|.+++|++|++|
T Consensus 648 ~Gy~K~kvyn~~~G~D~L~~~pIS~AnA~QRaGRAGRt~pG~cYRlYTe~ay~~eml~stvPEIqRTNl~nvVLlLkslg 727 (1042)
T KOG0924|consen 648 TGYCKLKVYNPRIGMDALQIVPISQANADQRAGRAGRTGPGTCYRLYTEDAYKNEMLPSTVPEIQRTNLSNVVLLLKSLG 727 (1042)
T ss_pred cCceeeeecccccccceeEEEechhccchhhccccCCCCCcceeeehhhhHHHhhcccCCCchhhhcchhhHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999999889999999999999999999999999
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHcccccCCCCccHHHHHHhcCCCChHHHHHHHHHHhhhhhhhhhhhccchhhhH
Q 038192 567 IDKVSNFPFPTPPEVTALVEAERCLKALEALDSNGRLTALGKAMAHYPMSPRHSRMLLTLIQTMKVKSYARANLVLGYGV 646 (764)
Q Consensus 567 ~~~~~~f~~~~pP~~~~i~~ai~~L~~lgAld~~~~LT~LG~~la~LPvdp~lgkmLl~~~~~~~~~~~~~~~~~l~~~~ 646 (764)
++++..|+|+|||+.+.+.+|+-.|..|||||..|.||++|+.|++||+||.|+||||.|+.+ +|.+.++
T Consensus 728 V~dll~FdFmD~Pped~~~~sly~Lw~LGAl~~~g~LT~lG~~MvefpLDP~lsKmll~a~~~----------Gc~dEil 797 (1042)
T KOG0924|consen 728 VDDLLKFDFMDPPPEDNLLNSLYQLWTLGALDNTGQLTPLGRKMVEFPLDPPLSKMLLMAARM----------GCSDEIL 797 (1042)
T ss_pred hhhhhCCCcCCCCHHHHHHHHHHHHHHhhccccCCccchhhHHhhhCCCCchHHHHHHHHhcc----------CcHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999988643 6788889
Q ss_pred HhhhcccCCcceeeccccccCCCCCchhhhhcccCCCCChhhHHHHhhhhhHHHHHHHHHhhcCCCCCcHHHHHHHHHHH
Q 038192 647 AAAAALSVSNPFVLQLEGTQTNSNDSELEERDNALDSEDPMCRQEKLGKRKLKEVAKLSHAKFSNPTSDVLTVAYALQCF 726 (764)
Q Consensus 647 ~iaA~ls~~~~F~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~f~~~~sD~lt~ln~~~~~ 726 (764)
+||++||++..|+.|.+. .++++.+|.+|.++.|||||+||+|++|
T Consensus 798 sIvSmLSvp~VF~rpker----------------------------------~eead~ar~Kf~~~~sDhLTlLNVf~qw 843 (1042)
T KOG0924|consen 798 SIVSMLSVPAVFYRPKER----------------------------------EEEADAAREKFQVPESDHLTLLNVFNQW 843 (1042)
T ss_pred HHHHHhcccceeeccccc----------------------------------hhhhhhHHhhhcCCCCchhhHHHHHHHH
Confidence 999999999999988542 1567788999999999999999999999
Q ss_pred HhcCCcHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcC
Q 038192 727 ELSKSPVEFCNEYALHLKTMEEMSKLRKQLLHLLFNQN 764 (764)
Q Consensus 727 ~~~~~~~~~C~~~~l~~~~l~~i~~ir~QL~~~l~~~g 764 (764)
..++++..||++|||+.++|+.++++|+||+++|++++
T Consensus 844 ~~~~~~~~WCnd~~l~~kaL~~arevR~ql~~il~~l~ 881 (1042)
T KOG0924|consen 844 RKNKYSSMWCNDHYLQVKALKKAREVRRQLLEILKQLK 881 (1042)
T ss_pred HhcCCchhhhhhhhhhHHHHHHHHHHHHHHHHHHHHcC
Confidence 99999999999999999999999999999999999864
No 4
>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=6.3e-130 Score=1080.61 Aligned_cols=658 Identities=52% Similarity=0.773 Sum_probs=514.8
Q ss_pred CCCCCeeeccCChhHHHhhhcCCCchhhHHHHHHHHHcCCeEEEEecCCCCccccHHHHHHHhccCCCCCCCCCceEEEe
Q 038192 12 PLAAPIVVHVSRPNEVENNRKDLPIVMMEQEIMEAVNDNSAVIICGETGCGKTTQVPQFLFEAGFGSNRCSSRSGRIGVT 91 (764)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~R~~LPi~~~~~~Il~~l~~~~vviI~GeTGSGKTTqvPq~Lle~~~~~~~~~~~~~~Ii~t 91 (764)
|..+..+++++|+.|+|+.|..|||....++|+++|..|+||||||+|||||||||||||+|+||++..... ++.|.+|
T Consensus 233 ~~~~a~yV~V~R~~EIQ~sR~~LPI~aeEq~IMEaIn~n~vvIIcGeTGsGKTTQvPQFLYEAGf~s~~~~~-~gmIGIT 311 (1172)
T KOG0926|consen 233 CRRKAFYVIVSRPAEIQESRLDLPIVAEEQRIMEAINENPVVIICGETGSGKTTQVPQFLYEAGFASEQSSS-PGMIGIT 311 (1172)
T ss_pred cccccEEEEecCcHHHHHHHhcCchhHHHHHHHHHhhcCCeEEEecCCCCCccccchHHHHHcccCCccCCC-CCeeeec
Confidence 356778899999999999999999999999999999999999999999999999999999999998764433 6899999
Q ss_pred cccHHHHHHHHHHHHHHhCCCCCCEeeEEeccCcccCCCceEEEEchHHHHHHHHH----------HHHHHHH-----HH
Q 038192 92 QPRRVAVLATAKRVAFELGLHLGKEVGFQVRHDKKIGDSCSIKFMTDGILLRELKA----------LYEKQQQ-----LL 156 (764)
Q Consensus 92 QPRRiaAisvA~RVa~E~g~~lG~~VGY~ir~e~~~s~~t~I~f~T~GiLLr~l~~----------i~de~~~-----~l 156 (764)
||||+||++.|+|||.|+|. +|..||||||||+..++.|+|+|||+|||||+|.. |+||+|+ ++
T Consensus 312 qPRRVAaiamAkRVa~EL~~-~~~eVsYqIRfd~ti~e~T~IkFMTDGVLLrEi~~DflL~kYSvIIlDEAHERSvnTDI 390 (1172)
T KOG0926|consen 312 QPRRVAAIAMAKRVAFELGV-LGSEVSYQIRFDGTIGEDTSIKFMTDGVLLREIENDFLLTKYSVIILDEAHERSVNTDI 390 (1172)
T ss_pred CchHHHHHHHHHHHHHHhcc-CccceeEEEEeccccCCCceeEEecchHHHHHHHHhHhhhhceeEEechhhhccchHHH
Confidence 99999999999999999998 99999999999999999999999999999999954 4588874 45
Q ss_pred hhccccCCc----------cCCCCceEEEeecccchhhhccccCCCCC-CCeeeeCCcccceeEEecCCCchhhHHHHHH
Q 038192 157 RSGQCIEPK----------DRVFPLKLILMSATLRVEDFISGGRLFRN-PPIIEVPTRQFPVTVHFSKRTEIVDYIGQAY 225 (764)
Q Consensus 157 ~~~~~~~~~----------~~~~~lKlILMSATl~~~~f~~~~~~f~~-~~vi~i~gr~~pV~~~y~~~~~~~d~l~~~~ 225 (764)
+.|.+-.+- -...+||||+||||+.+++|.+++++|.. +|+|.|+.|+|||.+||.+++. .||+.+++
T Consensus 391 LiGmLSRiV~LR~k~~ke~~~~kpLKLIIMSATLRVsDFtenk~LFpi~pPlikVdARQfPVsIHF~krT~-~DYi~eAf 469 (1172)
T KOG0926|consen 391 LIGMLSRIVPLRQKYYKEQCQIKPLKLIIMSATLRVSDFTENKRLFPIPPPLIKVDARQFPVSIHFNKRTP-DDYIAEAF 469 (1172)
T ss_pred HHHHHHHHHHHHHHHhhhhcccCceeEEEEeeeEEecccccCceecCCCCceeeeecccCceEEEeccCCC-chHHHHHH
Confidence 666543221 12458999999999999999999999998 8899999999999999999998 79999999
Q ss_pred HHHHHHhhcCCCCCeEEecCCHHHHHHHHHHHHHHHHHhhhhccccccCCccccCCCCCccccchhHHhHHHHHhhcCcc
Q 038192 226 KKVMSIHKRLPQGGILVFVTGQREVEYLCSKLRKASKQLLVNSSKENKGNQVVADSEPNATKDINMKEINEAFEIQGYST 305 (764)
Q Consensus 226 ~~v~~i~~~~~~g~ilvF~~g~~~ie~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (764)
++.+.||+++|+|+||||+||+++|+++|++|++.+... .++..++++-+++.....
T Consensus 470 rKtc~IH~kLP~G~ILVFvTGQqEV~qL~~kLRK~~p~~---------------------f~~~k~~k~~k~~~e~k~-- 526 (1172)
T KOG0926|consen 470 RKTCKIHKKLPPGGILVFVTGQQEVDQLCEKLRKRFPES---------------------FGGVKMKKNVKAFKELKE-- 526 (1172)
T ss_pred HHHHHHhhcCCCCcEEEEEeChHHHHHHHHHHHhhCccc---------------------cccchhhhhhhhcccccc--
Confidence 999999999999999999999999999999999865321 111111111111110000
Q ss_pred cccccccCCCCCcccccCccccccccCccchhhhhhccchhhhhhhcCCCCCCCCcccccccchhhhhHHHHHHhhcCCC
Q 038192 306 EQQTDRFSSYDEDQFDIDDNELDALSDSETESETEILGEDEKLVEQKCPMDGDDPVDVLKENWSLGSLKLAFEVLSGKNA 385 (764)
Q Consensus 306 ~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilvfl~g~~~i~~l~~~~~~l~~~~~ 385 (764)
...+++.+ ++....+.+ ++..++++ +--++-. .....+..++..+.....
T Consensus 527 ------------~~s~~~~~----~k~~dfe~E-d~~~~~ed------------~d~~~~~-~~~~~~raa~~~~~De~~ 576 (1172)
T KOG0926|consen 527 ------------NPSDIGDS----NKTDDFEEE-DMYESDED------------IDQELVD-SGFASLRAAFNALADENG 576 (1172)
T ss_pred ------------chhhhccC----cccccchhc-ccccchhh------------hhhhhhc-ccchhhhhhhhccccccc
Confidence 00000000 000000000 00000000 0000000 000112222222211111
Q ss_pred CCCCccccCCCCCCCCcCCCCCCCCCCCCCCCCCCCccccccCcccCCCCCeEEEecCCCCCHHHHHhhhccCCCCceEE
Q 038192 386 SGPSSQMKLSTPAIPEQCTELPPTPTPEQCPELSSPDVEKMGDNKRAGVGALCVLPLYAMLPAAAQLRVFEDVKEGERLV 465 (764)
Q Consensus 386 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~pLHs~l~~~eQ~~vf~~~~~g~rKV 465 (764)
+. + ++ +.-..-.+-.+..++...+ ....+.|+||||-|+.++|.+||++.|.|.|-|
T Consensus 577 ~~---n----------------ge---~e~d~~e~~~E~~~~~~~~-~~~pLyvLPLYSLLs~~~Q~RVF~~~p~g~RLc 633 (1172)
T KOG0926|consen 577 SV---N----------------GE---PEKDESEEGQEAEQGKGKF-SPGPLYVLPLYSLLSTEKQMRVFDEVPKGERLC 633 (1172)
T ss_pred cc---c----------------CC---cccchhhhchhhhhccCCC-CCCceEEeehhhhcCHHHhhhhccCCCCCceEE
Confidence 00 0 00 0000000011112222222 456799999999999999999999999999999
Q ss_pred EEecCcccccCCCCCeEEEEeCCcccceeeccCCCccccceeeccHHhHHHhccccCCCCCCEEEEccCHHHhcccCCCC
Q 038192 466 VVSTNVAETSLTIPGIKYVVDTGREKVKKYNSANGIESYEIQWISKASAAQRAGRAGRTAPGHCYRLYSSAVFNNILPDF 545 (764)
Q Consensus 466 IlsTNIAEtSITIpdV~~VID~G~~K~~~yd~~~~~~~l~~~~iSkasa~QR~GRAGR~~~G~cyrLys~~~~~~~l~~~ 545 (764)
|||||+||||||||+|+||||||++|++.||..+|++++...|||||||.||+|||||++||+||||||.+.|++.|++|
T Consensus 634 VVaTNVAETSLTIPgIkYVVD~Gr~K~R~Yd~~TGV~~FeV~wiSkASadQRAGRAGRtgpGHcYRLYSSAVf~~~Fe~f 713 (1172)
T KOG0926|consen 634 VVATNVAETSLTIPGIKYVVDCGRVKERLYDSKTGVSSFEVDWISKASADQRAGRAGRTGPGHCYRLYSSAVFSNDFEEF 713 (1172)
T ss_pred EEeccchhcccccCCeeEEEeccchhhhccccccCceeEEEEeeeccccchhccccCCCCCCceeehhhhHHhhcchhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999899999
Q ss_pred CCCcccccChhhHHHHHHHcCCCCCCCCCCCCCCCHHHHHHHHHHHHHcccccCCCCccHHHHHHhcCCCChHHHHHHHH
Q 038192 546 SCAEISKVPVDGVVLLMKSMNIDKVSNFPFPTPPEVTALVEAERCLKALEALDSNGRLTALGKAMAHYPMSPRHSRMLLT 625 (764)
Q Consensus 546 ~~PEI~r~~L~~~~L~lk~l~~~~~~~f~~~~pP~~~~i~~ai~~L~~lgAld~~~~LT~LG~~la~LPvdp~lgkmLl~ 625 (764)
+.|||++.|.++++||||+|+|+++.+||||+||...++..|++.|..|||||.+|.||+||+.|+.||+.|++||||+.
T Consensus 714 S~PEIlk~Pve~lvLqMKsMnI~kVvnFPFPtpPd~~~L~~Aer~L~~LgALd~~g~lT~lGk~mS~FPlsPrfsKmL~~ 793 (1172)
T KOG0926|consen 714 SLPEILKKPVESLVLQMKSMNIDKVVNFPFPTPPDRSALEKAERRLKALGALDSNGGLTKLGKAMSLFPLSPRFSKMLAT 793 (1172)
T ss_pred ccHHHhhCcHHHHHHHHHhcCccceecCCCCCCccHHHHHHHHHHHHHhccccccCCcccccchhcccccChhHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHhhhhhhhhhhhccchhhhHHhhhcccCCcceeecccccc-CCCCCchhhhhcccCCCCChhhHHHHhhhhhHHHHHHH
Q 038192 626 LIQTMKVKSYARANLVLGYGVAAAAALSVSNPFVLQLEGTQ-TNSNDSELEERDNALDSEDPMCRQEKLGKRKLKEVAKL 704 (764)
Q Consensus 626 ~~~~~~~~~~~~~~~~l~~~~~iaA~ls~~~~F~~p~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 704 (764)
+.+. .|+.+++.++++||+..+|+.-..... .-++-+...+++...+ ++.+ ++++.++.++.....
T Consensus 794 ~~Q~----------~~lpy~i~lvsaLsv~e~~i~~~~ll~n~~~r~~~~eE~d~~~~-de~~--~d~~~K~~rr~~~~a 860 (1172)
T KOG0926|consen 794 SDQH----------NLLPYNIALVSALSVYEVLIVAASLLPNPLIREFEPEEKDLIKD-DETV--EDKELKKRRREKSKA 860 (1172)
T ss_pred HHhh----------cchhHHHHHHHHHhccchhhhhhhcccccccccCCcchhhcccc-cccc--ccHHHHHHHHHHHHH
Confidence 8652 589999999999999999876322100 0000000011111111 1111 223344445566777
Q ss_pred HHhhcCCCCCcHHHHHHHHHHHHhcCCcHHHHHHhcCCHHHHHHHHHHHHHHHHHHH
Q 038192 705 SHAKFSNPTSDVLTVAYALQCFELSKSPVEFCNEYALHLKTMEEMSKLRKQLLHLLF 761 (764)
Q Consensus 705 ~~~~f~~~~sD~lt~ln~~~~~~~~~~~~~~C~~~~l~~~~l~~i~~ir~QL~~~l~ 761 (764)
++.+|....||-|+++.|..+++.+.+...||..|||..++|.+++++|+||..++.
T Consensus 861 a~~rf~~l~sd~l~Ll~Av~a~ey~~~~~rfc~~ngLr~Kam~Ev~KLR~QL~~lv~ 917 (1172)
T KOG0926|consen 861 ARSRFSNLDSDALVLLSAVSAAEYAENGMRFCEANGLRLKAMEEVRKLRKQLTNLVN 917 (1172)
T ss_pred HHhhhccCCccHHHHHHHHHHHHhhhhcchhHHhcchHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999999999999888888999999999999999999999999886
No 5
>KOG0925 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=8.5e-126 Score=1004.17 Aligned_cols=528 Identities=36% Similarity=0.585 Sum_probs=485.7
Q ss_pred CCCCeeec-cCChhHHHhhhcCCCchhhHHHHHHHHHcCCeEEEEecCCCCccccHHHHHHHhccCCCCCCCCCceEEEe
Q 038192 13 LAAPIVVH-VSRPNEVENNRKDLPIVMMEQEIMEAVNDNSAVIICGETGCGKTTQVPQFLFEAGFGSNRCSSRSGRIGVT 91 (764)
Q Consensus 13 ~~~~~~~~-~~~~~~~~~~R~~LPi~~~~~~Il~~l~~~~vviI~GeTGSGKTTqvPq~Lle~~~~~~~~~~~~~~Ii~t 91 (764)
++|....| .+||..+.+.|..||||.+|+++++.+.+||++|++|+||||||||||||++|...... ..+.||
T Consensus 24 ~Npf~~~p~s~rY~~ilk~R~~LPvw~~k~~F~~~l~~nQ~~v~vGetgsGKttQiPq~~~~~~~~~~------~~v~CT 97 (699)
T KOG0925|consen 24 INPFNGKPYSQRYYDILKKRRELPVWEQKEEFLKLLLNNQIIVLVGETGSGKTTQIPQFVLEYELSHL------TGVACT 97 (699)
T ss_pred cCCCCCCcCcHHHHHHHHHHhcCchHHhHHHHHHHHhcCceEEEEecCCCCccccCcHHHHHHHHhhc------cceeec
Confidence 56666666 47899999999999999999999999999999999999999999999999999876543 479999
Q ss_pred cccHHHHHHHHHHHHHHhCCCCCCEeeEEeccCcccCCCceEEEEchHHHHHHHHH----------HHHHHHH-----HH
Q 038192 92 QPRRVAVLATAKRVAFELGLHLGKEVGFQVRHDKKIGDSCSIKFMTDGILLRELKA----------LYEKQQQ-----LL 156 (764)
Q Consensus 92 QPRRiaAisvA~RVa~E~g~~lG~~VGY~ir~e~~~s~~t~I~f~T~GiLLr~l~~----------i~de~~~-----~l 156 (764)
||||+||+|||+|||+||...+|+.|||.||||+|++++|-+.|||+|+|||+... |+||+|+ ++
T Consensus 98 Qprrvaamsva~RVadEMDv~lG~EVGysIrfEdC~~~~T~Lky~tDgmLlrEams~p~l~~y~viiLDeahERtlATDi 177 (699)
T KOG0925|consen 98 QPRRVAAMSVAQRVADEMDVTLGEEVGYSIRFEDCTSPNTLLKYCTDGMLLREAMSDPLLGRYGVIILDEAHERTLATDI 177 (699)
T ss_pred CchHHHHHHHHHHHHHHhccccchhccccccccccCChhHHHHHhcchHHHHHHhhCcccccccEEEechhhhhhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999843 5688774 57
Q ss_pred hhccccCCccCCCCceEEEeecccchhhhccccCCCCCCCeeeeCCcccceeEEecCCCchhhHHHHHHHHHHHHhhcCC
Q 038192 157 RSGQCIEPKDRVFPLKLILMSATLRVEDFISGGRLFRNPPIIEVPTRQFPVTVHFSKRTEIVDYIGQAYKKVMSIHKRLP 236 (764)
Q Consensus 157 ~~~~~~~~~~~~~~lKlILMSATl~~~~f~~~~~~f~~~~vi~i~gr~~pV~~~y~~~~~~~d~l~~~~~~v~~i~~~~~ 236 (764)
+.|+++.+...+||||+|+||||+++++|. +||+++|+++||| +|||+++|....+ .||++++...+++||....
T Consensus 178 LmGllk~v~~~rpdLk~vvmSatl~a~Kfq---~yf~n~Pll~vpg-~~PvEi~Yt~e~e-rDylEaairtV~qih~~ee 252 (699)
T KOG0925|consen 178 LMGLLKEVVRNRPDLKLVVMSATLDAEKFQ---RYFGNAPLLAVPG-THPVEIFYTPEPE-RDYLEAAIRTVLQIHMCEE 252 (699)
T ss_pred HHHHHHHHHhhCCCceEEEeecccchHHHH---HHhCCCCeeecCC-CCceEEEecCCCC-hhHHHHHHHHHHHHHhccC
Confidence 778888777778999999999999999999 6999999999999 9999999999888 9999999999999999999
Q ss_pred CCCeEEecCCHHHHHHHHHHHHHHHHHhhhhccccccCCccccCCCCCccccchhHHhHHHHHhhcCcccccccccCCCC
Q 038192 237 QGGILVFVTGQREVEYLCSKLRKASKQLLVNSSKENKGNQVVADSEPNATKDINMKEINEAFEIQGYSTEQQTDRFSSYD 316 (764)
Q Consensus 237 ~g~ilvF~~g~~~ie~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~ 316 (764)
+||||||++|++|||..|+.+.+....+
T Consensus 253 ~GDilvFLtgeeeIe~aC~~i~re~~~L---------------------------------------------------- 280 (699)
T KOG0925|consen 253 PGDILVFLTGEEEIEDACRKISREVDNL---------------------------------------------------- 280 (699)
T ss_pred CCCEEEEecCHHHHHHHHHHHHHHHHhh----------------------------------------------------
Confidence 9999999999999999999886521100
Q ss_pred CcccccCccccccccCccchhhhhhccchhhhhhhcCCCCCCCCcccccccchhhhhHHHHHHhhcCCCCCCCccccCCC
Q 038192 317 EDQFDIDDNELDALSDSETESETEILGEDEKLVEQKCPMDGDDPVDVLKENWSLGSLKLAFEVLSGKNASGPSSQMKLST 396 (764)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilvfl~g~~~i~~l~~~~~~l~~~~~~~~~~~~~~~~ 396 (764)
+
T Consensus 281 ------~------------------------------------------------------------------------- 281 (699)
T KOG0925|consen 281 ------G------------------------------------------------------------------------- 281 (699)
T ss_pred ------c-------------------------------------------------------------------------
Confidence 0
Q ss_pred CCCCCcCCCCCCCCCCCCCCCCCCCccccccCcccCCCCCeEEEecCCCCCHHHHHhhhccCCCC-----ceEEEEecCc
Q 038192 397 PAIPEQCTELPPTPTPEQCPELSSPDVEKMGDNKRAGVGALCVLPLYAMLPAAAQLRVFEDVKEG-----ERLVVVSTNV 471 (764)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~pLHs~l~~~eQ~~vf~~~~~g-----~rKVIlsTNI 471 (764)
.....++|+||| +.+|.++|++.|.. -|||||||||
T Consensus 282 -----------------------------------~~~g~l~v~PLy----P~~qq~iFep~p~~~~~~~~RkvVvstni 322 (699)
T KOG0925|consen 282 -----------------------------------PQVGPLKVVPLY----PAQQQRIFEPAPEKRNGAYGRKVVVSTNI 322 (699)
T ss_pred -----------------------------------cccCCceEEecC----chhhccccCCCCcccCCCccceEEEEecc
Confidence 012458899999 88899999998743 5999999999
Q ss_pred ccccCCCCCeEEEEeCCcccceeeccCCCccccceeeccHHhHHHhccccCCCCCCEEEEccCHHHhcccCCCCCCCccc
Q 038192 472 AETSLTIPGIKYVVDTGREKVKKYNSANGIESYEIQWISKASAAQRAGRAGRTAPGHCYRLYSSAVFNNILPDFSCAEIS 551 (764)
Q Consensus 472 AEtSITIpdV~~VID~G~~K~~~yd~~~~~~~l~~~~iSkasa~QR~GRAGR~~~G~cyrLys~~~~~~~l~~~~~PEI~ 551 (764)
||||+|||+|+||||.|+.|++.|||+.++++|...|||||+|.||+|||||++||+||||||++.|+..|.+.+.|||+
T Consensus 323 aetsltidgiv~VIDpGf~kqkVYNPRIRvesllv~PISkasA~qR~gragrt~pGkcfrLYte~~~~~em~~~typeil 402 (699)
T KOG0925|consen 323 AETSLTIDGIVFVIDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTRPGKCFRLYTEEAFEKEMQPQTYPEIL 402 (699)
T ss_pred hheeeeeccEEEEecCchhhhcccCcceeeeeeeeccchHhHHHHHhhhccCCCCCceEEeecHHhhhhcCCCCCcHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccChhhHHHHHHHcCCCCCCCCCCCCCCCHHHHHHHHHHHHHcccccCCCCccHHHHHHhcCCCChHHHHHHHHHHhhhh
Q 038192 552 KVPVDGVVLLMKSMNIDKVSNFPFPTPPEVTALVEAERCLKALEALDSNGRLTALGKAMAHYPMSPRHSRMLLTLIQTMK 631 (764)
Q Consensus 552 r~~L~~~~L~lk~l~~~~~~~f~~~~pP~~~~i~~ai~~L~~lgAld~~~~LT~LG~~la~LPvdp~lgkmLl~~~~~~~ 631 (764)
|.+|.+++|++|.+||+++..|+|++||.++++.+|++.|..|+|||++|+||++|.+|++||+||+++|||+.+..
T Consensus 403 rsNL~s~VL~LKklgI~dlvhfdfmDpPAPEtLMrALE~LnYLaaLdDdGnLT~lG~imSEFPLdPqLAkmLi~S~e--- 479 (699)
T KOG0925|consen 403 RSNLSSTVLQLKKLGIDDLVHFDFMDPPAPETLMRALEVLNYLAALDDDGNLTSLGEIMSEFPLDPQLAKMLIGSCE--- 479 (699)
T ss_pred HHhhHHHHHHHHhcCcccccCCcCCCCCChHHHHHHHHHhhhhhhhCCCcccchhhhhhhcCCCChHHHHHHhhcCC---
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999997643
Q ss_pred hhhhhhhccchhhhHHhhhcccCCcceeeccccccCCCCCchhhhhcccCCCCChhhHHHHhhhhhHHHHHHHHHhhcCC
Q 038192 632 VKSYARANLVLGYGVAAAAALSVSNPFVLQLEGTQTNSNDSELEERDNALDSEDPMCRQEKLGKRKLKEVAKLSHAKFSN 711 (764)
Q Consensus 632 ~~~~~~~~~~l~~~~~iaA~ls~~~~F~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~f~~ 711 (764)
|. |...+++|+|+||++++|+.|... .+++|+.+++.|+|
T Consensus 480 ---fn----CsnEiLsisAMLsvPncFvRp~~~---------------------------------a~kaAdeak~~faH 519 (699)
T KOG0925|consen 480 ---FN----CSNEILSISAMLSVPNCFVRPTSS---------------------------------ASKAADEAKETFAH 519 (699)
T ss_pred ---CC----chHHHHHHHhcccCCccccCCChh---------------------------------HHHHHHHHHHHhcc
Confidence 44 556677999999999999988521 13578899999999
Q ss_pred CCCcHHHHHHHHHHHHhcCCcHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcC
Q 038192 712 PTSDVLTVAYALQCFELSKSPVEFCNEYALHLKTMEEMSKLRKQLLHLLFNQN 764 (764)
Q Consensus 712 ~~sD~lt~ln~~~~~~~~~~~~~~C~~~~l~~~~l~~i~~ir~QL~~~l~~~g 764 (764)
.+|||+|++|+|++|+++....+||++||||+.+|+.+.++|.||.++|.+++
T Consensus 520 ~dGDHlTLlnVYhAfkq~~~~~~WC~~~flN~ral~~Ad~vR~qL~rim~R~~ 572 (699)
T KOG0925|consen 520 IDGDHLTLLNVYHAFKQNNEDPNWCYDNFLNYRALKSADNVRQQLLRIMDRFN 572 (699)
T ss_pred CCcchHHHHHHHHHHHhcCCChhHHHHhcccHHHHHhHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999875
No 6
>KOG0920 consensus ATP-dependent RNA helicase A [RNA processing and modification]
Probab=100.00 E-value=3.7e-122 Score=1069.56 Aligned_cols=554 Identities=33% Similarity=0.472 Sum_probs=463.2
Q ss_pred CChhHHHhhhcCCCchhhHHHHHHHHHcCCeEEEEecCCCCccccHHHHHHHhccCCCCCCCCCceEEEecccHHHHHHH
Q 038192 22 SRPNEVENNRKDLPIVMMEQEIMEAVNDNSAVIICGETGCGKTTQVPQFLFEAGFGSNRCSSRSGRIGVTQPRRVAVLAT 101 (764)
Q Consensus 22 ~~~~~~~~~R~~LPi~~~~~~Il~~l~~~~vviI~GeTGSGKTTqvPq~Lle~~~~~~~~~~~~~~Ii~tQPRRiaAisv 101 (764)
+++.++++.|.+||+|++|++|+++|++|||++|+|+|||||||||||||||+.+..+ ..|+|+||||||||||+|
T Consensus 160 ~~~~~~~~~R~~LPa~~~r~~Il~~i~~~qVvvIsGeTGcGKTTQvpQfiLd~~~~~~----~~~~IicTQPRRIsAIsv 235 (924)
T KOG0920|consen 160 ESYKEMLRFRESLPAYKMRDTILDAIEENQVVVISGETGCGKTTQVPQFILDEAIESG----AACNIICTQPRRISAISV 235 (924)
T ss_pred hHHHHHHHHHHhCccHHHHHHHHHHHHhCceEEEeCCCCCCchhhhhHHHHHHHHhcC----CCCeEEecCCchHHHHHH
Confidence 4567899999999999999999999999999999999999999999999999876554 358999999999999999
Q ss_pred HHHHHHHhCCCCCCEeeEEeccCcccCCCceEEEEchHHHHHHHHH----------HHHHHH-HHHhhcccc----CCcc
Q 038192 102 AKRVAFELGLHLGKEVGFQVRHDKKIGDSCSIKFMTDGILLRELKA----------LYEKQQ-QLLRSGQCI----EPKD 166 (764)
Q Consensus 102 A~RVa~E~g~~lG~~VGY~ir~e~~~s~~t~I~f~T~GiLLr~l~~----------i~de~~-~~l~~~~~~----~~~~ 166 (764)
|+|||+|||+.+|.+||||||++++.+..|+|+|||+|+|||.|+. |.||+| |.+..++++ ..+.
T Consensus 236 AeRVa~ER~~~~g~~VGYqvrl~~~~s~~t~L~fcTtGvLLr~L~~~~~l~~vthiivDEVHER~i~~DflLi~lk~lL~ 315 (924)
T KOG0920|consen 236 AERVAKERGESLGEEVGYQVRLESKRSRETRLLFCTTGVLLRRLQSDPTLSGVTHIIVDEVHERSINTDFLLILLKDLLP 315 (924)
T ss_pred HHHHHHHhccccCCeeeEEEeeecccCCceeEEEecHHHHHHHhccCcccccCceeeeeeEEEccCCcccHHHHHHHHhh
Confidence 9999999999999999999999999999999999999999999943 668866 445555433 3345
Q ss_pred CCCCceEEEeecccchhhhccccCCCCCCCeeeeCCcccceeEEecCCCchhhHHHHHHHHHHHHhhcCCCCCeEEecCC
Q 038192 167 RVFPLKLILMSATLRVEDFISGGRLFRNPPIIEVPTRQFPVTVHFSKRTEIVDYIGQAYKKVMSIHKRLPQGGILVFVTG 246 (764)
Q Consensus 167 ~~~~lKlILMSATl~~~~f~~~~~~f~~~~vi~i~gr~~pV~~~y~~~~~~~d~l~~~~~~v~~i~~~~~~g~ilvF~~g 246 (764)
++|+||+||||||+|++.|+ +||++||+|+||||+|||.+||+ +|++..... ......+. .+...+
T Consensus 316 ~~p~LkvILMSAT~dae~fs---~YF~~~pvi~i~grtfpV~~~fL-----EDil~~~~~----~~~~~~~~--~~~~~~ 381 (924)
T KOG0920|consen 316 RNPDLKVILMSATLDAELFS---DYFGGCPVITIPGRTFPVKEYFL-----EDILSKTGY----VSEDDSAR--SGPERS 381 (924)
T ss_pred hCCCceEEEeeeecchHHHH---HHhCCCceEeecCCCcchHHHHH-----HHHHHHhcc----cccccccc--cccccC
Confidence 67999999999999999999 79999999999999999999997 566543200 00000000 000000
Q ss_pred HHHHHHHHHHHHHHHHHhhhhccccccCCccccCCCCCccccchhHHhHHHHHhhcCcccccccccCCCCCcccccCccc
Q 038192 247 QREVEYLCSKLRKASKQLLVNSSKENKGNQVVADSEPNATKDINMKEINEAFEIQGYSTEQQTDRFSSYDEDQFDIDDNE 326 (764)
Q Consensus 247 ~~~ie~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~ 326 (764)
.+.. .+ ...++...|
T Consensus 382 ---------~~~~-----------------------------------------------~~----~~~~~~~id----- 396 (924)
T KOG0920|consen 382 ---------QLRL-----------------------------------------------AR----LKLWEPEID----- 396 (924)
T ss_pred ---------cccc-----------------------------------------------cc----chhcccccc-----
Confidence 0000 00 000000000
Q ss_pred cccccCccchhhhhhccchhhhhhhcCCCCCCCCcccccccchhhhhHHHHHHhhcCCCCCCCccccCCCCCCCCcCCCC
Q 038192 327 LDALSDSETESETEILGEDEKLVEQKCPMDGDDPVDVLKENWSLGSLKLAFEVLSGKNASGPSSQMKLSTPAIPEQCTEL 406 (764)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilvfl~g~~~i~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (764)
.+++.+...++ .....+|+|||||||+.+|..+...++.-.
T Consensus 397 ------------~~Li~~li~~I--~~~~~~GaILVFLPG~~eI~~~~~~L~~~~------------------------- 437 (924)
T KOG0920|consen 397 ------------YDLIEDLIEYI--DEREFEGAILVFLPGWEEILQLKELLEVNL------------------------- 437 (924)
T ss_pred ------------HHHHHHHHHhc--ccCCCCceEEEEcCCHHHHHHHHHHhhhcc-------------------------
Confidence 01111111111 223568999999999999999877664320
Q ss_pred CCCCCCCCCCCCCCCccccccCcccCCCCCeEEEecCCCCCHHHHHhhhccCCCCceEEEEecCcccccCCCCCeEEEEe
Q 038192 407 PPTPTPEQCPELSSPDVEKMGDNKRAGVGALCVLPLYAMLPAAAQLRVFEDVKEGERLVVVSTNVAETSLTIPGIKYVVD 486 (764)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~pLHs~l~~~eQ~~vf~~~~~g~rKVIlsTNIAEtSITIpdV~~VID 486 (764)
.+....++.++||||.|+..||+.||+.+|.|.||||+||||||||||||||+||||
T Consensus 438 -----------------------~f~~~~~~~ilplHs~~~s~eQ~~VF~~pp~g~RKIIlaTNIAETSITIdDVvyVID 494 (924)
T KOG0920|consen 438 -----------------------PFADSLKFAILPLHSSIPSEEQQAVFKRPPKGTRKIILATNIAETSITIDDVVYVID 494 (924)
T ss_pred -----------------------ccccccceEEEeccccCChHHHHHhcCCCCCCcchhhhhhhhHhhcccccCeEEEEe
Confidence 111225799999999999999999999999999999999999999999999999999
Q ss_pred CCcccceeeccCCCccccceeeccHHhHHHhccccCCCCCCEEEEccCHHHhcccCCCCCCCcccccChhhHHHHHHHcC
Q 038192 487 TGREKVKKYNSANGIESYEIQWISKASAAQRAGRAGRTAPGHCYRLYSSAVFNNILPDFSCAEISKVPVDGVVLLMKSMN 566 (764)
Q Consensus 487 ~G~~K~~~yd~~~~~~~l~~~~iSkasa~QR~GRAGR~~~G~cyrLys~~~~~~~l~~~~~PEI~r~~L~~~~L~lk~l~ 566 (764)
||++|++.||+.+++++|...|+|||+|+||+|||||+++|+|||||++.+|+.++..|++|||+|+||+++||++|.++
T Consensus 495 sG~~Ke~~yD~~~~~s~l~~~wvSkAna~QR~GRAGRv~~G~cy~L~~~~~~~~~~~~~q~PEilR~pL~~l~L~iK~l~ 574 (924)
T KOG0920|consen 495 SGLVKEKSYDPERKVSCLLLSWVSKANAKQRRGRAGRVRPGICYHLYTRSRYEKLMLAYQLPEILRTPLEELCLHIKVLE 574 (924)
T ss_pred cCeeeeeeecccCCcchhheeeccccchHHhcccccCccCCeeEEeechhhhhhcccccCChHHHhChHHHhhheeeecc
Confidence 99999999999999999999999999999999999999999999999999999877779999999999999999999999
Q ss_pred CCCCCCCC--CCCCCCHHHHHHHHHHHHHcccccCCCCccHHHHHHhcCCCChHHHHHHHHHHhhhhhhhhhhhccchhh
Q 038192 567 IDKVSNFP--FPTPPEVTALVEAERCLKALEALDSNGRLTALGKAMAHYPMSPRHSRMLLTLIQTMKVKSYARANLVLGY 644 (764)
Q Consensus 567 ~~~~~~f~--~~~pP~~~~i~~ai~~L~~lgAld~~~~LT~LG~~la~LPvdp~lgkmLl~~~~~~~~~~~~~~~~~l~~ 644 (764)
.+.+..|. +++||+.+++.+|+..|..+||||.+++||+||++||+||+||++|||+++|..+ +||++
T Consensus 575 ~~~~~~fLskaldpP~~~~v~~a~~~L~~igaL~~~e~LT~LG~~la~lPvd~~igK~ll~g~if----------~cLdp 644 (924)
T KOG0920|consen 575 QGSIKAFLSKALDPPPADAVDLAIERLKQIGALDESEELTPLGLHLASLPVDVRIGKLLLFGAIF----------GCLDP 644 (924)
T ss_pred CCCHHHHHHHhcCCCChHHHHHHHHHHHHhccccCcccchHHHHHHHhCCCccccchhheehhhc----------cccch
Confidence 99888875 6999999999999999999999999999999999999999999999999998754 58999
Q ss_pred hHHhhhcccCCcceeeccccccCCCCCchhhhhcccCCCCChhhHHHHhhhhhHHHHHHHHHhhcCCC-CCcHHHHHHHH
Q 038192 645 GVAAAAALSVSNPFVLQLEGTQTNSNDSELEERDNALDSEDPMCRQEKLGKRKLKEVAKLSHAKFSNP-TSDVLTVAYAL 723 (764)
Q Consensus 645 ~~~iaA~ls~~~~F~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~f~~~-~sD~lt~ln~~ 723 (764)
+++|||+||.++||+.|.+.. +.++.+++.|... .||||++++||
T Consensus 645 ~l~iaa~Ls~k~PF~~~~~~~----------------------------------~~~~~~~~~~~~~~~SD~la~~~ay 690 (924)
T KOG0920|consen 645 ALTIAAALSFKSPFVSPLGKR----------------------------------EEADKAKKLLALDSISDHLAVVRAY 690 (924)
T ss_pred hhhHHHHhccCCCcccCCCch----------------------------------hHHHHHHHHhccCCcchHHHHHHHH
Confidence 999999999999999987532 3445566677633 59999999999
Q ss_pred HHHHhc-----CCcHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcC
Q 038192 724 QCFELS-----KSPVEFCNEYALHLKTMEEMSKLRKQLLHLLFNQN 764 (764)
Q Consensus 724 ~~~~~~-----~~~~~~C~~~~l~~~~l~~i~~ir~QL~~~l~~~g 764 (764)
+.|... ....+||++||||..+|+++..+|.||.+.|.+.|
T Consensus 691 ~~w~~~~~~~~~~~~~fc~~~fLs~~~l~~i~~l~~q~~~~l~~~g 736 (924)
T KOG0920|consen 691 AGWREILRSGPSAEKDFCEENFLSSNTLQEISSLRVQFLELLSDIG 736 (924)
T ss_pred HHHHHHHhccchHHHHHHHHhhccHHHHHHHHHHHHHHHHHhhhcc
Confidence 999753 24579999999999999999999999999999876
No 7
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=100.00 E-value=8.1e-117 Score=1030.80 Aligned_cols=519 Identities=42% Similarity=0.625 Sum_probs=464.5
Q ss_pred cCChhHHHhhhcCCCchhhHHHHHHHHHcCCeEEEEecCCCCccccHHHHHHHhccCCCCCCCCCceEEEecccHHHHHH
Q 038192 21 VSRPNEVENNRKDLPIVMMEQEIMEAVNDNSAVIICGETGCGKTTQVPQFLFEAGFGSNRCSSRSGRIGVTQPRRVAVLA 100 (764)
Q Consensus 21 ~~~~~~~~~~R~~LPi~~~~~~Il~~l~~~~vviI~GeTGSGKTTqvPq~Lle~~~~~~~~~~~~~~Ii~tQPRRiaAis 100 (764)
.++...+.++|..|||+..+++|+++|++|+|+||+|+||||||||+||||||.++..+ ++|+||||||+||++
T Consensus 36 ~~~~~~~~~~~~~LPv~~~~~~i~~ai~~~~vvii~getGsGKTTqlP~~lle~g~~~~------g~I~~tQPRRlAArs 109 (845)
T COG1643 36 SANVPDILEYRSGLPVTAVRDEILKAIEQNQVVIIVGETGSGKTTQLPQFLLEEGLGIA------GKIGCTQPRRLAARS 109 (845)
T ss_pred ccccchhhhccccCCcHHHHHHHHHHHHhCCEEEEeCCCCCChHHHHHHHHHhhhcccC------CeEEecCchHHHHHH
Confidence 35567789999999999999999999999999999999999999999999999998443 699999999999999
Q ss_pred HHHHHHHHhCCCCCCEeeEEeccCcccCCCceEEEEchHHHHHHHHH----------HHHHHHH-----HHhhccccCCc
Q 038192 101 TAKRVAFELGLHLGKEVGFQVRHDKKIGDSCSIKFMTDGILLRELKA----------LYEKQQQ-----LLRSGQCIEPK 165 (764)
Q Consensus 101 vA~RVa~E~g~~lG~~VGY~ir~e~~~s~~t~I~f~T~GiLLr~l~~----------i~de~~~-----~l~~~~~~~~~ 165 (764)
+|+|||+|+|+++|++|||+||||++++++|+|+|||+|||+|+++. |+||+|+ ++++|+++.+.
T Consensus 110 vA~RvAeel~~~~G~~VGY~iRfe~~~s~~Trik~mTdGiLlrei~~D~~Ls~ys~vIiDEaHERSl~tDilLgllk~~~ 189 (845)
T COG1643 110 VAERVAEELGEKLGETVGYSIRFESKVSPRTRIKVMTDGILLREIQNDPLLSGYSVVIIDEAHERSLNTDILLGLLKDLL 189 (845)
T ss_pred HHHHHHHHhCCCcCceeeEEEEeeccCCCCceeEEeccHHHHHHHhhCcccccCCEEEEcchhhhhHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999974 6788774 35556665544
Q ss_pred c-CCCCceEEEeecccchhhhccccCCCCCCCeeeeCCcccceeEEecCCCchhhH-HHHHHHHHHHHhhcCCCCCeEEe
Q 038192 166 D-RVFPLKLILMSATLRVEDFISGGRLFRNPPIIEVPTRQFPVTVHFSKRTEIVDY-IGQAYKKVMSIHKRLPQGGILVF 243 (764)
Q Consensus 166 ~-~~~~lKlILMSATl~~~~f~~~~~~f~~~~vi~i~gr~~pV~~~y~~~~~~~d~-l~~~~~~v~~i~~~~~~g~ilvF 243 (764)
. +++|||+|+||||+|+++|+ +||++||+++|+||+|||+++|.+... .|| +.+++..++++|...+.|+||||
T Consensus 190 ~~rr~DLKiIimSATld~~rfs---~~f~~apvi~i~GR~fPVei~Y~~~~~-~d~~l~~ai~~~v~~~~~~~~GdILvF 265 (845)
T COG1643 190 ARRRDDLKLIIMSATLDAERFS---AYFGNAPVIEIEGRTYPVEIRYLPEAE-ADYILLDAIVAAVDIHLREGSGSILVF 265 (845)
T ss_pred hhcCCCceEEEEecccCHHHHH---HHcCCCCEEEecCCccceEEEecCCCC-cchhHHHHHHHHHHHhccCCCCCEEEE
Confidence 4 44589999999999999999 699999999999999999999988776 778 99999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHHHHHhhhhccccccCCccccCCCCCccccchhHHhHHHHHhhcCcccccccccCCCCCcccccC
Q 038192 244 VTGQREVEYLCSKLRKASKQLLVNSSKENKGNQVVADSEPNATKDINMKEINEAFEIQGYSTEQQTDRFSSYDEDQFDID 323 (764)
Q Consensus 244 ~~g~~~ie~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~ 323 (764)
+||++||+.+++.|++. .
T Consensus 266 LpG~~EI~~~~~~L~~~--~------------------------------------------------------------ 283 (845)
T COG1643 266 LPGQREIERTAEWLEKA--E------------------------------------------------------------ 283 (845)
T ss_pred CCcHHHHHHHHHHHHhc--c------------------------------------------------------------
Confidence 99999999998887530 0
Q ss_pred ccccccccCccchhhhhhccchhhhhhhcCCCCCCCCcccccccchhhhhHHHHHHhhcCCCCCCCccccCCCCCCCCcC
Q 038192 324 DNELDALSDSETESETEILGEDEKLVEQKCPMDGDDPVDVLKENWSLGSLKLAFEVLSGKNASGPSSQMKLSTPAIPEQC 403 (764)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilvfl~g~~~i~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 403 (764)
T Consensus 284 -------------------------------------------------------------------------------- 283 (845)
T COG1643 284 -------------------------------------------------------------------------------- 283 (845)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCCCCCCCCCCCccccccCcccCCCCCeEEEecCCCCCHHHHHhhhccCCCCceEEEEecCcccccCCCCCeEE
Q 038192 404 TELPPTPTPEQCPELSSPDVEKMGDNKRAGVGALCVLPLYAMLPAAAQLRVFEDVKEGERLVVVSTNVAETSLTIPGIKY 483 (764)
Q Consensus 404 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~pLHs~l~~~eQ~~vf~~~~~g~rKVIlsTNIAEtSITIpdV~~ 483 (764)
....+.|+||||.|+.++|.+||++.+.|+|||||||||||||||||||+|
T Consensus 284 -----------------------------l~~~~~i~PLy~~L~~~eQ~rvF~p~~~~~RKVVlATNIAETSLTI~gIr~ 334 (845)
T COG1643 284 -----------------------------LGDDLEILPLYGALSAEEQVRVFEPAPGGKRKVVLATNIAETSLTIPGIRY 334 (845)
T ss_pred -----------------------------ccCCcEEeeccccCCHHHHHhhcCCCCCCcceEEEEccccccceeeCCeEE
Confidence 002468999999999999999999999999999999999999999999999
Q ss_pred EEeCCcccceeeccCCCccccceeeccHHhHHHhccccCCCCCCEEEEccCHHHhcccCCCCCCCcccccChhhHHHHHH
Q 038192 484 VVDTGREKVKKYNSANGIESYEIQWISKASAAQRAGRAGRTAPGHCYRLYSSAVFNNILPDFSCAEISKVPVDGVVLLMK 563 (764)
Q Consensus 484 VID~G~~K~~~yd~~~~~~~l~~~~iSkasa~QR~GRAGR~~~G~cyrLys~~~~~~~l~~~~~PEI~r~~L~~~~L~lk 563 (764)
|||+|+.|++.||+.+++++|.++|||||||.||+|||||++||+||||||++.|. .|++++.|||+|++|++++|++|
T Consensus 335 VIDsG~ak~~~y~~~~g~~~L~~~~ISqAsA~QRaGRAGR~~pGicyRLyse~~~~-~~~~~t~PEIlrtdLs~~vL~l~ 413 (845)
T COG1643 335 VIDSGLAKEKRYDPRTGLTRLETEPISKASADQRAGRAGRTGPGICYRLYSEEDFL-AFPEFTLPEILRTDLSGLVLQLK 413 (845)
T ss_pred EecCCcccccccccccCceeeeEEEechhhhhhhccccccCCCceEEEecCHHHHH-hcccCCChhhhhcchHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999998 69999999999999999999999
Q ss_pred HcCCC-CCCCCCCCCCCCHHHHHHHHHHHHHcccccCCCCccHHHHHHhcCCCChHHHHHHHHHHhhhhhhhhhhhccch
Q 038192 564 SMNID-KVSNFPFPTPPEVTALVEAERCLKALEALDSNGRLTALGKAMAHYPMSPRHSRMLLTLIQTMKVKSYARANLVL 642 (764)
Q Consensus 564 ~l~~~-~~~~f~~~~pP~~~~i~~ai~~L~~lgAld~~~~LT~LG~~la~LPvdp~lgkmLl~~~~~~~~~~~~~~~~~l 642 (764)
++|++ ++..|+|+|||+..++..|++.|..+||||.+|.||++|+.|+.||+||++++||+.|.. .+|+
T Consensus 414 ~~G~~~d~~~f~fld~P~~~~i~~A~~~L~~LGAld~~g~LT~lG~~ms~lpldprLA~mLl~a~~----------~g~~ 483 (845)
T COG1643 414 SLGIGQDIAPFPFLDPPPEAAIQAALTLLQELGALDDSGKLTPLGKQMSLLPLDPRLARMLLTAPE----------GGCL 483 (845)
T ss_pred hcCCCCCcccCccCCCCChHHHHHHHHHHHHcCCcCCCCCCCHHHHHHHhCCCChHHHHHHHhccc----------cCcH
Confidence 99996 999999999999999999999999999999999999999999999999999999998742 3689
Q ss_pred hhhHHhhhcccCCc---ceeeccccccCCCCCchhhhhcccCCCCChhhHHHHhhhhhHHHHHHHH-HhhcCC---CCCc
Q 038192 643 GYGVAAAAALSVSN---PFVLQLEGTQTNSNDSELEERDNALDSEDPMCRQEKLGKRKLKEVAKLS-HAKFSN---PTSD 715 (764)
Q Consensus 643 ~~~~~iaA~ls~~~---~F~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~-~~~f~~---~~sD 715 (764)
..+++|||+||+++ .|..+.+.. +. . .+.+.+ +.++.+ +.+|
T Consensus 484 ~e~~~Ias~Ls~~~~~s~~~~~~~~~---------------------------~~---~-~~~~~~~~l~~~~~~~~~~d 532 (845)
T COG1643 484 GEAATIASMLSEQDRESDFSRDVKLR---------------------------KQ---R-TAQDLLKRLKRRNAADPRGD 532 (845)
T ss_pred HHHHHHHHhhccCCCcchhccccchh---------------------------hH---H-HHHHHHHHHHhccCCCcchH
Confidence 99999999999998 465543211 00 0 011111 133334 7899
Q ss_pred HHHHHHHHHHHHhcC------CcHHHHHHhcCCHHHHHHHHHHHHHHHHHHHh
Q 038192 716 VLTVAYALQCFELSK------SPVEFCNEYALHLKTMEEMSKLRKQLLHLLFN 762 (764)
Q Consensus 716 ~lt~ln~~~~~~~~~------~~~~~C~~~~l~~~~l~~i~~ir~QL~~~l~~ 762 (764)
|++++++|..|...+ ....||+.+++++++|.++..++.+++..+..
T Consensus 533 ~~~ll~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~i~~~~l~~~~~ 585 (845)
T COG1643 533 HLLLLEAFPDRIARKRAKGEYLRANGCRAMLFPTKALSRAPWIIAALLVQTSA 585 (845)
T ss_pred HHHHHHHHHHHHHhhhccchhhHhcChhhhcCChhHHHhhHHHHHHHHHhhhc
Confidence 999999999998666 57899999999999999999999998877654
No 8
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=100.00 E-value=9.6e-109 Score=992.42 Aligned_cols=507 Identities=35% Similarity=0.568 Sum_probs=449.5
Q ss_pred hhhcCCCchhhHHHHHHHHHcCCeEEEEecCCCCccccHHHHHHHhccCCCCCCCCCceEEEecccHHHHHHHHHHHHHH
Q 038192 29 NNRKDLPIVMMEQEIMEAVNDNSAVIICGETGCGKTTQVPQFLFEAGFGSNRCSSRSGRIGVTQPRRVAVLATAKRVAFE 108 (764)
Q Consensus 29 ~~R~~LPi~~~~~~Il~~l~~~~vviI~GeTGSGKTTqvPq~Lle~~~~~~~~~~~~~~Ii~tQPRRiaAisvA~RVa~E 108 (764)
.+|.+|||+.++++|+++|++|+|+||+|+||||||||+||++++.+.+. .++|+||||||+||+++|+|||+|
T Consensus 68 ~~~~~LPi~~~r~~Il~ai~~~~VviI~GeTGSGKTTqlPq~lle~g~g~------~g~I~~TQPRRlAArsLA~RVA~E 141 (1294)
T PRK11131 68 TYPENLPVSQKKQDILEAIRDHQVVIVAGETGSGKTTQLPKICLELGRGV------KGLIGHTQPRRLAARTVANRIAEE 141 (1294)
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCeEEEECCCCCCHHHHHHHHHHHcCCCC------CCceeeCCCcHHHHHHHHHHHHHH
Confidence 45788999999999999999999999999999999999999999976543 268999999999999999999999
Q ss_pred hCCCCCCEeeEEeccCcccCCCceEEEEchHHHHHHHHH----------HHHHHH-HHHhhccc----cCCccCCCCceE
Q 038192 109 LGLHLGKEVGFQVRHDKKIGDSCSIKFMTDGILLRELKA----------LYEKQQ-QLLRSGQC----IEPKDRVFPLKL 173 (764)
Q Consensus 109 ~g~~lG~~VGY~ir~e~~~s~~t~I~f~T~GiLLr~l~~----------i~de~~-~~l~~~~~----~~~~~~~~~lKl 173 (764)
+++.+|..|||+||++++.+++|+|+|||+|+|+++++. |+||+| +++..+++ ..+..+++++|+
T Consensus 142 l~~~lG~~VGY~vrf~~~~s~~t~I~v~TpG~LL~~l~~d~~Ls~~~~IIIDEAHERsLn~DfLLg~Lk~lL~~rpdlKv 221 (1294)
T PRK11131 142 LETELGGCVGYKVRFNDQVSDNTMVKLMTDGILLAEIQQDRLLMQYDTIIIDEAHERSLNIDFILGYLKELLPRRPDLKV 221 (1294)
T ss_pred HhhhhcceeceeecCccccCCCCCEEEEChHHHHHHHhcCCccccCcEEEecCccccccccchHHHHHHHhhhcCCCceE
Confidence 999999999999999999999999999999999999863 679998 56665553 333455689999
Q ss_pred EEeecccchhhhccccCCCCCCCeeeeCCcccceeEEecCCCc-----hhhHHHHHHHHHHHHhhcCCCCCeEEecCCHH
Q 038192 174 ILMSATLRVEDFISGGRLFRNPPIIEVPTRQFPVTVHFSKRTE-----IVDYIGQAYKKVMSIHKRLPQGGILVFVTGQR 248 (764)
Q Consensus 174 ILMSATl~~~~f~~~~~~f~~~~vi~i~gr~~pV~~~y~~~~~-----~~d~l~~~~~~v~~i~~~~~~g~ilvF~~g~~ 248 (764)
|+||||++.+.|+ +||+++|+|.|+|++|||+++|.+... ..|++...+..+..++ ..++|++|||++|++
T Consensus 222 ILmSATid~e~fs---~~F~~apvI~V~Gr~~pVei~y~p~~~~~~~~~~d~l~~ll~~V~~l~-~~~~GdILVFLpg~~ 297 (1294)
T PRK11131 222 IITSATIDPERFS---RHFNNAPIIEVSGRTYPVEVRYRPIVEEADDTERDQLQAIFDAVDELG-REGPGDILIFMSGER 297 (1294)
T ss_pred EEeeCCCCHHHHH---HHcCCCCEEEEcCccccceEEEeecccccchhhHHHHHHHHHHHHHHh-cCCCCCEEEEcCCHH
Confidence 9999999999998 699999999999999999999976432 1345555555544444 346788999999999
Q ss_pred HHHHHHHHHHHHHHHhhhhccccccCCccccCCCCCccccchhHHhHHHHHhhcCcccccccccCCCCCcccccCccccc
Q 038192 249 EVEYLCSKLRKASKQLLVNSSKENKGNQVVADSEPNATKDINMKEINEAFEIQGYSTEQQTDRFSSYDEDQFDIDDNELD 328 (764)
Q Consensus 249 ~ie~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~ 328 (764)
+++.+++.|++.
T Consensus 298 EIe~lae~L~~~-------------------------------------------------------------------- 309 (1294)
T PRK11131 298 EIRDTADALNKL-------------------------------------------------------------------- 309 (1294)
T ss_pred HHHHHHHHHHhc--------------------------------------------------------------------
Confidence 988887776430
Q ss_pred cccCccchhhhhhccchhhhhhhcCCCCCCCCcccccccchhhhhHHHHHHhhcCCCCCCCccccCCCCCCCCcCCCCCC
Q 038192 329 ALSDSETESETEILGEDEKLVEQKCPMDGDDPVDVLKENWSLGSLKLAFEVLSGKNASGPSSQMKLSTPAIPEQCTELPP 408 (764)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilvfl~g~~~i~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 408 (764)
T Consensus 310 -------------------------------------------------------------------------------- 309 (1294)
T PRK11131 310 -------------------------------------------------------------------------------- 309 (1294)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCCCCCCccccccCcccCCCCCeEEEecCCCCCHHHHHhhhccCCCCceEEEEecCcccccCCCCCeEEEEeCC
Q 038192 409 TPTPEQCPELSSPDVEKMGDNKRAGVGALCVLPLYAMLPAAAQLRVFEDVKEGERLVVVSTNVAETSLTIPGIKYVVDTG 488 (764)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~pLHs~l~~~eQ~~vf~~~~~g~rKVIlsTNIAEtSITIpdV~~VID~G 488 (764)
....+.|+||||+|++++|.++|++ .|.|||||||||||||||||||+||||+|
T Consensus 310 ------------------------~~~~~~VlpLhg~Ls~~eQ~~Vf~~--~g~rkIIVATNIAEtSITIpgI~yVID~G 363 (1294)
T PRK11131 310 ------------------------NLRHTEILPLYARLSNSEQNRVFQS--HSGRRIVLATNVAETSLTVPGIKYVIDPG 363 (1294)
T ss_pred ------------------------CCCcceEeecccCCCHHHHHHHhcc--cCCeeEEEeccHHhhccccCcceEEEECC
Confidence 0023569999999999999999997 57899999999999999999999999999
Q ss_pred cccceeeccCCCccccceeeccHHhHHHhccccCCCCCCEEEEccCHHHhcccCCCCCCCcccccChhhHHHHHHHcCCC
Q 038192 489 REKVKKYNSANGIESYEIQWISKASAAQRAGRAGRTAPGHCYRLYSSAVFNNILPDFSCAEISKVPVDGVVLLMKSMNID 568 (764)
Q Consensus 489 ~~K~~~yd~~~~~~~l~~~~iSkasa~QR~GRAGR~~~G~cyrLys~~~~~~~l~~~~~PEI~r~~L~~~~L~lk~l~~~ 568 (764)
++|++.||+.++++.|...|||||+|.||+|||||+++|+||||||+++|.+ +++|+.|||+|++|+++||++|++|++
T Consensus 364 l~k~~~Yd~~~~~~~Lp~~~iSkasa~QRaGRAGR~~~G~c~rLyte~d~~~-~~~~~~PEIlR~~L~~viL~lk~lgl~ 442 (1294)
T PRK11131 364 TARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVSEGICIRLYSEDDFLS-RPEFTDPEILRTNLASVILQMTALGLG 442 (1294)
T ss_pred CccccccccccCcccCCeeecCHhhHhhhccccCCCCCcEEEEeCCHHHHHh-hhcccCCccccCCHHHHHHHHHHcCCC
Confidence 9999999999999999999999999999999999999999999999999976 899999999999999999999999999
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHcccccCC-----CCccHHHHHHhcCCCChHHHHHHHHHHhhhhhhhhhhhccchh
Q 038192 569 KVSNFPFPTPPEVTALVEAERCLKALEALDSN-----GRLTALGKAMAHYPMSPRHSRMLLTLIQTMKVKSYARANLVLG 643 (764)
Q Consensus 569 ~~~~f~~~~pP~~~~i~~ai~~L~~lgAld~~-----~~LT~LG~~la~LPvdp~lgkmLl~~~~~~~~~~~~~~~~~l~ 643 (764)
++..|+|++||+.++|.+|++.|..+||||.+ ++||++|++|++||+||++||||+.|..+ +|+.
T Consensus 443 di~~F~fldpP~~~~i~~al~~L~~LgAld~~~~~~~~~LT~lG~~la~LPldPrlakmLl~a~~~----------~c~~ 512 (1294)
T PRK11131 443 DIAAFPFVEAPDKRNIQDGVRLLEELGAITTDEQASAYKLTPLGRQLAQLPVDPRLARMVLEAQKH----------GCVR 512 (1294)
T ss_pred CcceeeCCCCCCHHHHHHHHHHHHHCCCCCccccCCCccCcHHHHHHHhCCCChHHHHHHHHhhhc----------CCHH
Confidence 99999999999999999999999999999864 57999999999999999999999998643 5889
Q ss_pred hhHHhhhcccCCcceeeccccccCCCCCchhhhhcccCCCCChhhHHHHhhhhhHHHHHHHHHhhcCCCCCcHHHHHHHH
Q 038192 644 YGVAAAAALSVSNPFVLQLEGTQTNSNDSELEERDNALDSEDPMCRQEKLGKRKLKEVAKLSHAKFSNPTSDVLTVAYAL 723 (764)
Q Consensus 644 ~~~~iaA~ls~~~~F~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~f~~~~sD~lt~ln~~ 723 (764)
++++|||+||+++||..|.+. ++.++.+|++|.++.|||+|++|+|
T Consensus 513 evl~IaA~Lsv~dpf~~p~~~----------------------------------~~~a~~~~~~f~~~~sD~lt~ln~~ 558 (1294)
T PRK11131 513 EVMIITSALSIQDPRERPMDK----------------------------------QQASDEKHRRFADKESDFLAFVNLW 558 (1294)
T ss_pred HHHHHHHHHcCCCcccCCchh----------------------------------HHHHHHHHHhhCCCCCCHHHHHHHH
Confidence 999999999999999877431 2456778999999999999999999
Q ss_pred HHHHhcC------CcHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcC
Q 038192 724 QCFELSK------SPVEFCNEYALHLKTMEEMSKLRKQLLHLLFNQN 764 (764)
Q Consensus 724 ~~~~~~~------~~~~~C~~~~l~~~~l~~i~~ir~QL~~~l~~~g 764 (764)
+.|.... ..++||++||||+.+|++|.++|.||.+++++.|
T Consensus 559 ~~~~~~~~~~s~~~~~~~C~~~~L~~~~l~e~~~i~~QL~~~~~~~g 605 (1294)
T PRK11131 559 NYLQEQQKALSSNQFRRLCRTDYLNYLRVREWQDIYTQLRQVVKELG 605 (1294)
T ss_pred HHHHHHHhhhcchHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHcC
Confidence 9996421 1358999999999999999999999999999876
No 9
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=100.00 E-value=5.7e-107 Score=980.78 Aligned_cols=508 Identities=37% Similarity=0.586 Sum_probs=447.8
Q ss_pred HhhhcCCCchhhHHHHHHHHHcCCeEEEEecCCCCccccHHHHHHHhccCCCCCCCCCceEEEecccHHHHHHHHHHHHH
Q 038192 28 ENNRKDLPIVMMEQEIMEAVNDNSAVIICGETGCGKTTQVPQFLFEAGFGSNRCSSRSGRIGVTQPRRVAVLATAKRVAF 107 (764)
Q Consensus 28 ~~~R~~LPi~~~~~~Il~~l~~~~vviI~GeTGSGKTTqvPq~Lle~~~~~~~~~~~~~~Ii~tQPRRiaAisvA~RVa~ 107 (764)
..++..|||+.++++|+++|++|+|+||+|+||||||||+||++++.+++. .++|+||||||+||+++|+|||+
T Consensus 60 ~~~~~~LPi~~~~~~Il~~l~~~~vvii~g~TGSGKTTqlPq~lle~~~~~------~~~I~~tQPRRlAA~svA~RvA~ 133 (1283)
T TIGR01967 60 IRYPDNLPVSAKREDIAEAIAENQVVIIAGETGSGKTTQLPKICLELGRGS------HGLIGHTQPRRLAARTVAQRIAE 133 (1283)
T ss_pred ccCCCCCCHHHHHHHHHHHHHhCceEEEeCCCCCCcHHHHHHHHHHcCCCC------CceEecCCccHHHHHHHHHHHHH
Confidence 346778999999999999999999999999999999999999999987543 26899999999999999999999
Q ss_pred HhCCCCCCEeeEEeccCcccCCCceEEEEchHHHHHHHHH----------HHHHHH-HHHhhccc----cCCccCCCCce
Q 038192 108 ELGLHLGKEVGFQVRHDKKIGDSCSIKFMTDGILLRELKA----------LYEKQQ-QLLRSGQC----IEPKDRVFPLK 172 (764)
Q Consensus 108 E~g~~lG~~VGY~ir~e~~~s~~t~I~f~T~GiLLr~l~~----------i~de~~-~~l~~~~~----~~~~~~~~~lK 172 (764)
|+|+.+|..|||+||++++++++|+|+|||+|+|+++++. |+||+| +++..+++ ..+...++++|
T Consensus 134 elg~~lG~~VGY~vR~~~~~s~~T~I~~~TdGiLLr~l~~d~~L~~~~~IIIDEaHERsL~~D~LL~lLk~il~~rpdLK 213 (1283)
T TIGR01967 134 ELGTPLGEKVGYKVRFHDQVSSNTLVKLMTDGILLAETQQDRFLSRYDTIIIDEAHERSLNIDFLLGYLKQLLPRRPDLK 213 (1283)
T ss_pred HhCCCcceEEeeEEcCCcccCCCceeeeccccHHHHHhhhCcccccCcEEEEcCcchhhccchhHHHHHHHHHhhCCCCe
Confidence 9999999999999999999999999999999999999964 679998 46655543 33445678999
Q ss_pred EEEeecccchhhhccccCCCCCCCeeeeCCcccceeEEecCCCc-----hhhHHHHHHHHHHHHhhcCCCCCeEEecCCH
Q 038192 173 LILMSATLRVEDFISGGRLFRNPPIIEVPTRQFPVTVHFSKRTE-----IVDYIGQAYKKVMSIHKRLPQGGILVFVTGQ 247 (764)
Q Consensus 173 lILMSATl~~~~f~~~~~~f~~~~vi~i~gr~~pV~~~y~~~~~-----~~d~l~~~~~~v~~i~~~~~~g~ilvF~~g~ 247 (764)
+|+||||+|.+.|+ +||+++|+|.|+|++|||+++|.+... ..++.......+..++. ..+|+||||++|+
T Consensus 214 lIlmSATld~~~fa---~~F~~apvI~V~Gr~~PVev~Y~~~~~~~~~~~~~~~~~i~~~I~~l~~-~~~GdILVFLpg~ 289 (1283)
T TIGR01967 214 IIITSATIDPERFS---RHFNNAPIIEVSGRTYPVEVRYRPLVEEQEDDDLDQLEAILDAVDELFA-EGPGDILIFLPGE 289 (1283)
T ss_pred EEEEeCCcCHHHHH---HHhcCCCEEEECCCcccceeEEecccccccchhhhHHHHHHHHHHHHHh-hCCCCEEEeCCCH
Confidence 99999999999999 699999999999999999999975321 02344444444444443 2568888888888
Q ss_pred HHHHHHHHHHHHHHHHhhhhccccccCCccccCCCCCccccchhHHhHHHHHhhcCcccccccccCCCCCcccccCcccc
Q 038192 248 REVEYLCSKLRKASKQLLVNSSKENKGNQVVADSEPNATKDINMKEINEAFEIQGYSTEQQTDRFSSYDEDQFDIDDNEL 327 (764)
Q Consensus 248 ~~ie~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~ 327 (764)
++|+.+++.|++.
T Consensus 290 ~EI~~l~~~L~~~------------------------------------------------------------------- 302 (1283)
T TIGR01967 290 REIRDAAEILRKR------------------------------------------------------------------- 302 (1283)
T ss_pred HHHHHHHHHHHhc-------------------------------------------------------------------
Confidence 8888877766430
Q ss_pred ccccCccchhhhhhccchhhhhhhcCCCCCCCCcccccccchhhhhHHHHHHhhcCCCCCCCccccCCCCCCCCcCCCCC
Q 038192 328 DALSDSETESETEILGEDEKLVEQKCPMDGDDPVDVLKENWSLGSLKLAFEVLSGKNASGPSSQMKLSTPAIPEQCTELP 407 (764)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilvfl~g~~~i~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 407 (764)
T Consensus 303 -------------------------------------------------------------------------------- 302 (1283)
T TIGR01967 303 -------------------------------------------------------------------------------- 302 (1283)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCCCCCCCccccccCcccCCCCCeEEEecCCCCCHHHHHhhhccCCCCceEEEEecCcccccCCCCCeEEEEeC
Q 038192 408 PTPTPEQCPELSSPDVEKMGDNKRAGVGALCVLPLYAMLPAAAQLRVFEDVKEGERLVVVSTNVAETSLTIPGIKYVVDT 487 (764)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~pLHs~l~~~eQ~~vf~~~~~g~rKVIlsTNIAEtSITIpdV~~VID~ 487 (764)
....+.|+||||+|++++|.++|++. +.|||||||||||||||||||+||||+
T Consensus 303 -------------------------~~~~~~VlpLhg~Ls~~eQ~~vf~~~--~~rkIVLATNIAEtSLTIpgV~yVIDs 355 (1283)
T TIGR01967 303 -------------------------NLRHTEILPLYARLSNKEQQRVFQPH--SGRRIVLATNVAETSLTVPGIHYVIDT 355 (1283)
T ss_pred -------------------------CCCCcEEEeccCCCCHHHHHHHhCCC--CCceEEEeccHHHhccccCCeeEEEeC
Confidence 00236799999999999999999975 358999999999999999999999999
Q ss_pred CcccceeeccCCCccccceeeccHHhHHHhccccCCCCCCEEEEccCHHHhcccCCCCCCCcccccChhhHHHHHHHcCC
Q 038192 488 GREKVKKYNSANGIESYEIQWISKASAAQRAGRAGRTAPGHCYRLYSSAVFNNILPDFSCAEISKVPVDGVVLLMKSMNI 567 (764)
Q Consensus 488 G~~K~~~yd~~~~~~~l~~~~iSkasa~QR~GRAGR~~~G~cyrLys~~~~~~~l~~~~~PEI~r~~L~~~~L~lk~l~~ 567 (764)
|++|.+.||+.++++.|.+.|||||+|.||+|||||+++|+||||||++.|+. +++++.|||+|++|.++||++|++|+
T Consensus 356 Gl~r~~~yd~~~~~~~L~~~~ISkasa~QRaGRAGR~~~G~cyRLyte~~~~~-~~~~~~PEIlR~~L~~viL~l~~lg~ 434 (1283)
T TIGR01967 356 GTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVAPGICIRLYSEEDFNS-RPEFTDPEILRTNLASVILQMLALRL 434 (1283)
T ss_pred CCccccccccccCccccCCccCCHHHHHHHhhhhCCCCCceEEEecCHHHHHh-hhhccCcccccccHHHHHHHHHhcCC
Confidence 99999999999999999999999999999999999999999999999999976 89999999999999999999999999
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHcccccCCC---CccHHHHHHhcCCCChHHHHHHHHHHhhhhhhhhhhhccchhh
Q 038192 568 DKVSNFPFPTPPEVTALVEAERCLKALEALDSNG---RLTALGKAMAHYPMSPRHSRMLLTLIQTMKVKSYARANLVLGY 644 (764)
Q Consensus 568 ~~~~~f~~~~pP~~~~i~~ai~~L~~lgAld~~~---~LT~LG~~la~LPvdp~lgkmLl~~~~~~~~~~~~~~~~~l~~ 644 (764)
+++..|+|++||+..+|.+|++.|..+||||.+| +||++|+.|++||+||++||||+.|..+ +|+.+
T Consensus 435 ~di~~f~fldpP~~~~i~~A~~~L~~LGAld~~~~~~~LT~lGr~ma~LPldPrlarmLl~a~~~----------gcl~e 504 (1283)
T TIGR01967 435 GDIAAFPFIEAPDPRAIRDGFRLLEELGALDDDEAEPQLTPIGRQLAQLPVDPRLARMLLEAHRL----------GCLQE 504 (1283)
T ss_pred CCcccccCCCCCCHHHHHHHHHHHHHCCCCCCCCCCccccHHHHHHhhcCCChHHHHHHHHhhhc----------CCHHH
Confidence 9999999999999999999999999999999998 8999999999999999999999998642 58889
Q ss_pred hHHhhhcccCCcceeeccccccCCCCCchhhhhcccCCCCChhhHHHHhhhhhHHHHHHHHHhhcCCCCCcHHHHHHHHH
Q 038192 645 GVAAAAALSVSNPFVLQLEGTQTNSNDSELEERDNALDSEDPMCRQEKLGKRKLKEVAKLSHAKFSNPTSDVLTVAYALQ 724 (764)
Q Consensus 645 ~~~iaA~ls~~~~F~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~f~~~~sD~lt~ln~~~ 724 (764)
+++|||+||+++||..|.+. ++.++.+|++|.++.|||++++|+|+
T Consensus 505 ~l~IaA~Ls~~dp~~~p~~~----------------------------------~~~a~~~~~~f~~~~sD~l~~L~~~~ 550 (1283)
T TIGR01967 505 VLIIASALSIQDPRERPMEK----------------------------------QQAADQAHARFKDPRSDFLSRVNLWR 550 (1283)
T ss_pred HHHHHHHHcCCCcCCCcchh----------------------------------HHHHHHHHHHhcCCCCCHHHHHHHHH
Confidence 99999999999999776431 24567789999999999999999999
Q ss_pred HHHhcC------CcHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcC
Q 038192 725 CFELSK------SPVEFCNEYALHLKTMEEMSKLRKQLLHLLFNQN 764 (764)
Q Consensus 725 ~~~~~~------~~~~~C~~~~l~~~~l~~i~~ir~QL~~~l~~~g 764 (764)
.|.... ...+||++||||+.+|+++.++++||.+++++.|
T Consensus 551 ~~~~~~~~~~~~~~~~~C~~~fL~~~~l~~~~~i~~QL~~~~~~~~ 596 (1283)
T TIGR01967 551 HIEEQRQALSANQFRNACRKQYLNYLRVREWQDIYRQLTQVVKELG 596 (1283)
T ss_pred HHHHhhhhccchHHHHHHHHcCcCHHHHHHHHHHHHHHHHHHHHcC
Confidence 996532 2369999999999999999999999999987654
No 10
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=100.00 E-value=1.1e-90 Score=823.35 Aligned_cols=430 Identities=34% Similarity=0.510 Sum_probs=381.3
Q ss_pred CCchhhHHHHHHHHHcCCeEEEEecCCCCccccHHHHHHHhccCCCCCCCCCceEEEecccHHHHHHHHHHHHHHhCCCC
Q 038192 34 LPIVMMEQEIMEAVNDNSAVIICGETGCGKTTQVPQFLFEAGFGSNRCSSRSGRIGVTQPRRVAVLATAKRVAFELGLHL 113 (764)
Q Consensus 34 LPi~~~~~~Il~~l~~~~vviI~GeTGSGKTTqvPq~Lle~~~~~~~~~~~~~~Ii~tQPRRiaAisvA~RVa~E~g~~l 113 (764)
|||+.++++|+++|++|+++||+|+||||||||+||+|++.... .++|+|+||||++|+++|+||++++|+.+
T Consensus 1 LPi~~~~~~i~~~l~~~~~vIi~a~TGSGKTT~vpl~lL~~~~~-------~~~ilvlqPrR~aA~qiA~rva~~~~~~~ 73 (819)
T TIGR01970 1 LPIHAVLPALRDALAAHPQVVLEAPPGAGKSTAVPLALLDAPGI-------GGKIIMLEPRRLAARSAAQRLASQLGEAV 73 (819)
T ss_pred CCchHHHHHHHHHHHcCCcEEEECCCCCCHHHHHHHHHHHhhcc-------CCeEEEEeCcHHHHHHHHHHHHHHhCCCc
Confidence 89999999999999999999999999999999999999987632 26899999999999999999999999999
Q ss_pred CCEeeEEeccCcccCCCceEEEEchHHHHHHHHH----------HHHHHHH-HHhhcc----ccCCc-cCCCCceEEEee
Q 038192 114 GKEVGFQVRHDKKIGDSCSIKFMTDGILLRELKA----------LYEKQQQ-LLRSGQ----CIEPK-DRVFPLKLILMS 177 (764)
Q Consensus 114 G~~VGY~ir~e~~~s~~t~I~f~T~GiLLr~l~~----------i~de~~~-~l~~~~----~~~~~-~~~~~lKlILMS 177 (764)
|..|||.||++++.+.+|+|+|||+|+|+++++. |+||+|+ ++..++ +..+. ..++++|+|+||
T Consensus 74 g~~VGy~vr~~~~~s~~t~I~v~T~G~Llr~l~~d~~L~~v~~VIiDEaHER~L~~Dl~L~ll~~i~~~lr~dlqlIlmS 153 (819)
T TIGR01970 74 GQTVGYRVRGENKVSRRTRLEVVTEGILTRMIQDDPELDGVGALIFDEFHERSLDADLGLALALDVQSSLREDLKILAMS 153 (819)
T ss_pred CcEEEEEEccccccCCCCcEEEECCcHHHHHHhhCcccccCCEEEEeccchhhhccchHHHHHHHHHHhcCCCceEEEEe
Confidence 9999999999999999999999999999999964 6799884 555443 22222 246789999999
Q ss_pred cccchhhhccccCCCCCCCeeeeCCcccceeEEecCCCchhhHHHHHHHH-HHHHhhcCCCCCeEEecCCHHHHHHHHHH
Q 038192 178 ATLRVEDFISGGRLFRNPPIIEVPTRQFPVTVHFSKRTEIVDYIGQAYKK-VMSIHKRLPQGGILVFVTGQREVEYLCSK 256 (764)
Q Consensus 178 ATl~~~~f~~~~~~f~~~~vi~i~gr~~pV~~~y~~~~~~~d~l~~~~~~-v~~i~~~~~~g~ilvF~~g~~~ie~l~~~ 256 (764)
||++.+.|. +||+++++|.++|+.|||+++|..... .+++...+.. +..+. ....|++|||++|+.+++.+++.
T Consensus 154 ATl~~~~l~---~~l~~~~vI~~~gr~~pVe~~y~~~~~-~~~~~~~v~~~l~~~l-~~~~g~iLVFlpg~~eI~~l~~~ 228 (819)
T TIGR01970 154 ATLDGERLS---SLLPDAPVVESEGRSFPVEIRYLPLRG-DQRLEDAVSRAVEHAL-ASETGSILVFLPGQAEIRRVQEQ 228 (819)
T ss_pred CCCCHHHHH---HHcCCCcEEEecCcceeeeeEEeecch-hhhHHHHHHHHHHHHH-HhcCCcEEEEECCHHHHHHHHHH
Confidence 999999887 699999999999999999999986543 3343333222 22222 22468899999999888887776
Q ss_pred HHHHHHHhhhhccccccCCccccCCCCCccccchhHHhHHHHHhhcCcccccccccCCCCCcccccCccccccccCccch
Q 038192 257 LRKASKQLLVNSSKENKGNQVVADSEPNATKDINMKEINEAFEIQGYSTEQQTDRFSSYDEDQFDIDDNELDALSDSETE 336 (764)
Q Consensus 257 L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (764)
|++..
T Consensus 229 L~~~~--------------------------------------------------------------------------- 233 (819)
T TIGR01970 229 LAERL--------------------------------------------------------------------------- 233 (819)
T ss_pred HHhhc---------------------------------------------------------------------------
Confidence 64300
Q ss_pred hhhhhccchhhhhhhcCCCCCCCCcccccccchhhhhHHHHHHhhcCCCCCCCccccCCCCCCCCcCCCCCCCCCCCCCC
Q 038192 337 SETEILGEDEKLVEQKCPMDGDDPVDVLKENWSLGSLKLAFEVLSGKNASGPSSQMKLSTPAIPEQCTELPPTPTPEQCP 416 (764)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~ilvfl~g~~~i~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 416 (764)
T Consensus 234 -------------------------------------------------------------------------------- 233 (819)
T TIGR01970 234 -------------------------------------------------------------------------------- 233 (819)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCccccccCcccCCCCCeEEEecCCCCCHHHHHhhhccCCCCceEEEEecCcccccCCCCCeEEEEeCCcccceeec
Q 038192 417 ELSSPDVEKMGDNKRAGVGALCVLPLYAMLPAAAQLRVFEDVKEGERLVVVSTNVAETSLTIPGIKYVVDTGREKVKKYN 496 (764)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~~~~~i~pLHs~l~~~eQ~~vf~~~~~g~rKVIlsTNIAEtSITIpdV~~VID~G~~K~~~yd 496 (764)
..++.+++|||+|++++|.++|+++++|+|||||||||||||||||||+||||+|++|++.||
T Consensus 234 -----------------~~~~~v~pLHg~L~~~eq~~~~~~~~~G~rkVlVATnIAErgItIp~V~~VID~Gl~r~~~yd 296 (819)
T TIGR01970 234 -----------------DSDVLICPLYGELSLAAQDRAIKPDPQGRRKVVLATNIAETSLTIEGIRVVIDSGLARVARFD 296 (819)
T ss_pred -----------------CCCcEEEEecCCCCHHHHHHHHhhcccCCeEEEEecchHhhcccccCceEEEEcCcccccccc
Confidence 024679999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCccccceeeccHHhHHHhccccCCCCCCEEEEccCHHHhcccCCCCCCCcccccChhhHHHHHHHcCCCCCCCCCCC
Q 038192 497 SANGIESYEIQWISKASAAQRAGRAGRTAPGHCYRLYSSAVFNNILPDFSCAEISKVPVDGVVLLMKSMNIDKVSNFPFP 576 (764)
Q Consensus 497 ~~~~~~~l~~~~iSkasa~QR~GRAGR~~~G~cyrLys~~~~~~~l~~~~~PEI~r~~L~~~~L~lk~l~~~~~~~f~~~ 576 (764)
+.++++.|.+.|||||||.||+|||||++||+||||||++.|.. |++++.|||+|++|++++|++|.+|+.++..|+|+
T Consensus 297 ~~~g~~~L~~~~iSkasa~QR~GRAGR~~~G~cyrL~t~~~~~~-l~~~~~PEI~r~~L~~~~L~l~~~g~~~~~~~~~l 375 (819)
T TIGR01970 297 PKTGITRLETVRISQASATQRAGRAGRLEPGVCYRLWSEEQHQR-LPAQDEPEILQADLSGLALELAQWGAKDPSDLRWL 375 (819)
T ss_pred cccCCceeeEEEECHHHHHhhhhhcCCCCCCEEEEeCCHHHHHh-hhcCCCcceeccCcHHHHHHHHHcCCCChhhCCCC
Confidence 99999999999999999999999999999999999999999975 89999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHcccccCCCCccHHHHHHhcCCCChHHHHHHHHHHhhhhhhhhhhhccchhhhHHhhhcccCCc
Q 038192 577 TPPEVTALVEAERCLKALEALDSNGRLTALGKAMAHYPMSPRHSRMLLTLIQTMKVKSYARANLVLGYGVAAAAALSVSN 656 (764)
Q Consensus 577 ~pP~~~~i~~ai~~L~~lgAld~~~~LT~LG~~la~LPvdp~lgkmLl~~~~~~~~~~~~~~~~~l~~~~~iaA~ls~~~ 656 (764)
+||+..++..|++.|..+||||.+|+||++|++|+.||+||++||||+.|..+ +|+..+++|||+||.++
T Consensus 376 ~~P~~~~i~~a~~~L~~lgald~~~~lT~~G~~~~~lp~~p~l~~~ll~~~~~----------~~~~~~~~iaa~ls~~~ 445 (819)
T TIGR01970 376 DAPPSVALAAARQLLQRLGALDAQGRLTAHGKAMAALGCHPRLAAMLLSAHST----------GLAALACDLAALLEERG 445 (819)
T ss_pred CCcCHHHHHHHHHHHHHCCCCCCCCCcCHHHHHHHhcCCCHHHHHHHHHhhhc----------CCHHHHHHHHHHHcCCC
Confidence 99999999999999999999999999999999999999999999999987532 57888999999999998
Q ss_pred ce
Q 038192 657 PF 658 (764)
Q Consensus 657 ~F 658 (764)
++
T Consensus 446 ~~ 447 (819)
T TIGR01970 446 LP 447 (819)
T ss_pred CC
Confidence 64
No 11
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=100.00 E-value=5.9e-88 Score=801.95 Aligned_cols=431 Identities=32% Similarity=0.493 Sum_probs=377.4
Q ss_pred CCCchhhHHHHHHHHHcCCeEEEEecCCCCccccHHHHHHHhccCCCCCCCCCceEEEecccHHHHHHHHHHHHHHhCCC
Q 038192 33 DLPIVMMEQEIMEAVNDNSAVIICGETGCGKTTQVPQFLFEAGFGSNRCSSRSGRIGVTQPRRVAVLATAKRVAFELGLH 112 (764)
Q Consensus 33 ~LPi~~~~~~Il~~l~~~~vviI~GeTGSGKTTqvPq~Lle~~~~~~~~~~~~~~Ii~tQPRRiaAisvA~RVa~E~g~~ 112 (764)
.|||+.++++|+++|++|+++||+|+||||||||+|+++++.... .++|+|+||||++|+++|+|+|+++|+.
T Consensus 3 ~LPi~~~~~~i~~~l~~~~~vvv~A~TGSGKTt~~pl~lL~~~~~-------~~~ilvlqPrR~aA~qia~rva~~l~~~ 75 (812)
T PRK11664 3 SLPVAAVLPELLTALKTAPQVLLKAPTGAGKSTWLPLQLLQHGGI-------NGKIIMLEPRRLAARNVAQRLAEQLGEK 75 (812)
T ss_pred CCCHHHHHHHHHHHHHhCCCEEEEcCCCCCHHHHHHHHHHHcCCc-------CCeEEEECChHHHHHHHHHHHHHHhCcc
Confidence 599999999999999999999999999999999999999987542 2589999999999999999999999999
Q ss_pred CCCEeeEEeccCcccCCCceEEEEchHHHHHHHHH----------HHHHHHH-HHhh----ccccCCc-cCCCCceEEEe
Q 038192 113 LGKEVGFQVRHDKKIGDSCSIKFMTDGILLRELKA----------LYEKQQQ-LLRS----GQCIEPK-DRVFPLKLILM 176 (764)
Q Consensus 113 lG~~VGY~ir~e~~~s~~t~I~f~T~GiLLr~l~~----------i~de~~~-~l~~----~~~~~~~-~~~~~lKlILM 176 (764)
+|..|||.+|++++.+++|+|+|||+|+|+++++. |+||+|+ ++.. +++..+. ..++++|+|+|
T Consensus 76 ~g~~VGy~vr~~~~~~~~t~I~v~T~G~Llr~l~~d~~L~~v~~IIlDEaHER~l~~Dl~L~ll~~i~~~lr~~lqlilm 155 (812)
T PRK11664 76 PGETVGYRMRAESKVGPNTRLEVVTEGILTRMIQRDPELSGVGLVILDEFHERSLQADLALALLLDVQQGLRDDLKLLIM 155 (812)
T ss_pred cCceEEEEecCccccCCCCcEEEEChhHHHHHHhhCCCcCcCcEEEEcCCCccccccchHHHHHHHHHHhCCccceEEEE
Confidence 99999999999999999999999999999999864 6799885 4433 3332222 24578999999
Q ss_pred ecccchhhhccccCCCCCCCeeeeCCcccceeEEecCCCchhhHHHHHHHHHHHHhhcCCCCCeEEecCCHHHHHHHHHH
Q 038192 177 SATLRVEDFISGGRLFRNPPIIEVPTRQFPVTVHFSKRTEIVDYIGQAYKKVMSIHKRLPQGGILVFVTGQREVEYLCSK 256 (764)
Q Consensus 177 SATl~~~~f~~~~~~f~~~~vi~i~gr~~pV~~~y~~~~~~~d~l~~~~~~v~~i~~~~~~g~ilvF~~g~~~ie~l~~~ 256 (764)
|||++.+.|. +||+++++|.++|+.|||+++|..... .+++...+..++........|++|||++|..+++.+++.
T Consensus 156 SATl~~~~l~---~~~~~~~~I~~~gr~~pV~~~y~~~~~-~~~~~~~v~~~l~~~l~~~~g~iLVFlpg~~ei~~l~~~ 231 (812)
T PRK11664 156 SATLDNDRLQ---QLLPDAPVIVSEGRSFPVERRYQPLPA-HQRFDEAVARATAELLRQESGSLLLFLPGVGEIQRVQEQ 231 (812)
T ss_pred ecCCCHHHHH---HhcCCCCEEEecCccccceEEeccCch-hhhHHHHHHHHHHHHHHhCCCCEEEEcCCHHHHHHHHHH
Confidence 9999999887 699999999999999999999986543 445543333222222223468899999999888888777
Q ss_pred HHHHHHHhhhhccccccCCccccCCCCCccccchhHHhHHHHHhhcCcccccccccCCCCCcccccCccccccccCccch
Q 038192 257 LRKASKQLLVNSSKENKGNQVVADSEPNATKDINMKEINEAFEIQGYSTEQQTDRFSSYDEDQFDIDDNELDALSDSETE 336 (764)
Q Consensus 257 L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (764)
|++..
T Consensus 232 L~~~~--------------------------------------------------------------------------- 236 (812)
T PRK11664 232 LASRV--------------------------------------------------------------------------- 236 (812)
T ss_pred HHHhc---------------------------------------------------------------------------
Confidence 64300
Q ss_pred hhhhhccchhhhhhhcCCCCCCCCcccccccchhhhhHHHHHHhhcCCCCCCCccccCCCCCCCCcCCCCCCCCCCCCCC
Q 038192 337 SETEILGEDEKLVEQKCPMDGDDPVDVLKENWSLGSLKLAFEVLSGKNASGPSSQMKLSTPAIPEQCTELPPTPTPEQCP 416 (764)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~ilvfl~g~~~i~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 416 (764)
T Consensus 237 -------------------------------------------------------------------------------- 236 (812)
T PRK11664 237 -------------------------------------------------------------------------------- 236 (812)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCccccccCcccCCCCCeEEEecCCCCCHHHHHhhhccCCCCceEEEEecCcccccCCCCCeEEEEeCCcccceeec
Q 038192 417 ELSSPDVEKMGDNKRAGVGALCVLPLYAMLPAAAQLRVFEDVKEGERLVVVSTNVAETSLTIPGIKYVVDTGREKVKKYN 496 (764)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~~~~~i~pLHs~l~~~eQ~~vf~~~~~g~rKVIlsTNIAEtSITIpdV~~VID~G~~K~~~yd 496 (764)
..++.+++|||+|+.++|.++|+++++|+|||||||||||||||||||+||||+|++|+..||
T Consensus 237 -----------------~~~~~v~~Lhg~l~~~eq~~~~~~~~~G~rkVlvATnIAErsLtIp~V~~VID~Gl~r~~~yd 299 (812)
T PRK11664 237 -----------------ASDVLLCPLYGALSLAEQQKAILPAPAGRRKVVLATNIAETSLTIEGIRLVVDSGLERVARFD 299 (812)
T ss_pred -----------------cCCceEEEeeCCCCHHHHHHHhccccCCCeEEEEecchHHhcccccCceEEEECCCccccccc
Confidence 013679999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCccccceeeccHHhHHHhccccCCCCCCEEEEccCHHHhcccCCCCCCCcccccChhhHHHHHHHcCCCCCCCCCCC
Q 038192 497 SANGIESYEIQWISKASAAQRAGRAGRTAPGHCYRLYSSAVFNNILPDFSCAEISKVPVDGVVLLMKSMNIDKVSNFPFP 576 (764)
Q Consensus 497 ~~~~~~~l~~~~iSkasa~QR~GRAGR~~~G~cyrLys~~~~~~~l~~~~~PEI~r~~L~~~~L~lk~l~~~~~~~f~~~ 576 (764)
+.++++.|.+.|||||+|.||+|||||++||+||||||+..|.. |++++.|||+|.+|++++|++|++|+.++..|+|+
T Consensus 300 ~~~g~~~L~~~~iSkasa~QR~GRaGR~~~G~cyrL~t~~~~~~-l~~~~~PEI~r~dL~~~~L~l~~~g~~~~~~~~~l 378 (812)
T PRK11664 300 PKTGLTRLVTQRISQASMTQRAGRAGRLEPGICLHLYSKEQAER-AAAQSEPEILHSDLSGLLLELLQWGCHDPAQLSWL 378 (812)
T ss_pred ccCCcceeEEEeechhhhhhhccccCCCCCcEEEEecCHHHHhh-CccCCCCceeccchHHHHHHHHHcCCCCHHhCCCC
Confidence 99999999999999999999999999999999999999999975 89999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHcccccCCCCccHHHHHHhcCCCChHHHHHHHHHHhhhhhhhhhhhccchhhhHHhhhcccCC
Q 038192 577 TPPEVTALVEAERCLKALEALDSNGRLTALGKAMAHYPMSPRHSRMLLTLIQTMKVKSYARANLVLGYGVAAAAALSVS 655 (764)
Q Consensus 577 ~pP~~~~i~~ai~~L~~lgAld~~~~LT~LG~~la~LPvdp~lgkmLl~~~~~~~~~~~~~~~~~l~~~~~iaA~ls~~ 655 (764)
|||+..++.+|++.|..+||||.+|+||++|+.|++||+||++||||+.|..+ . ..+|..++.+||+|+.+
T Consensus 379 d~P~~~~~~~A~~~L~~lgald~~g~lT~~G~~m~~lp~~Prla~~ll~a~~~------~--~~~l~~a~~laall~e~ 449 (812)
T PRK11664 379 DQPPAAALAAAKRLLQQLGALDGQGRLTARGRKMAALGNDPRLAAMLVAAKED------D--EAALATAAKLAAILEEP 449 (812)
T ss_pred CCCCHHHHHHHHHHHHHCCCCCCCCCcCHHHHHHHhcCCchHHHHHHHHHHhc------C--chhhHHHHHHHHhhccC
Confidence 99999999999999999999999999999999999999999999999998642 2 13445667788888765
No 12
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=100.00 E-value=1.1e-74 Score=647.13 Aligned_cols=581 Identities=30% Similarity=0.425 Sum_probs=442.9
Q ss_pred hhHHHhhhcCCCchhhHHHHHHHHHcCCeEEEEecCCCCccccHHHHHHHhccCCCCCCCCCceEEEecccHHHHHHHHH
Q 038192 24 PNEVENNRKDLPIVMMEQEIMEAVNDNSAVIICGETGCGKTTQVPQFLFEAGFGSNRCSSRSGRIGVTQPRRVAVLATAK 103 (764)
Q Consensus 24 ~~~~~~~R~~LPi~~~~~~Il~~l~~~~vviI~GeTGSGKTTqvPq~Lle~~~~~~~~~~~~~~Ii~tQPRRiaAisvA~ 103 (764)
++.+.++|.+|||..++++|++++..|+|++|.|+|||||||||-|||||+-..+.. +....+.++||||++|+++|+
T Consensus 367 ~~~~~a~re~lpva~~~~~i~q~v~dn~v~~I~getgcgk~tq~aq~iLe~~~~ns~--g~~~na~v~qprrisaisiae 444 (1282)
T KOG0921|consen 367 LDKITAQREELPVAQYRSEILQAVAENRVVIIKGETGCGKSTQVAQFLLESFLENSN--GASFNAVVSQPRRISAISLAE 444 (1282)
T ss_pred hhhhhhhhhhCcHHHHHHHHHHHHhcCceeeEeecccccchhHHHHHHHHHHhhccc--cccccceeccccccchHHHHH
Confidence 356889999999999999999999999999999999999999999999998665433 223579999999999999999
Q ss_pred HHHHHhCCCCCCEeeEEeccCcccC-CCceEEEEchHHHHHHHHH--------HHHHHH-HHHhhcccc----CCccCCC
Q 038192 104 RVAFELGLHLGKEVGFQVRHDKKIG-DSCSIKFMTDGILLRELKA--------LYEKQQ-QLLRSGQCI----EPKDRVF 169 (764)
Q Consensus 104 RVa~E~g~~lG~~VGY~ir~e~~~s-~~t~I~f~T~GiLLr~l~~--------i~de~~-~~l~~~~~~----~~~~~~~ 169 (764)
|||+|+++.+|.+|||++|+++.++ +...|.|||.|+|+|++.. +.||.| +.+..+|++ .+....+
T Consensus 445 rva~er~e~~g~tvgy~vRf~Sa~prpyg~i~fctvgvllr~~e~glrg~sh~i~deiherdv~~dfll~~lr~m~~ty~ 524 (1282)
T KOG0921|consen 445 RVANERGEEVGETCGYNVRFDSATPRPYGSIMFCTVGVLLRMMENGLRGISHVIIDEIHERDVDTDFVLIVLREMISTYR 524 (1282)
T ss_pred HHHHhhHHhhcccccccccccccccccccceeeeccchhhhhhhhcccccccccchhhhhhccchHHHHHHHHhhhccch
Confidence 9999999999999999999999886 5778999999999999843 445544 334444433 3345678
Q ss_pred CceEEEeecccchhhhccccCCCCCCCeeeeCCcccceeEEecCCCchhhHHHHHHHHHHHHhhcCCCCCeEEecCCHHH
Q 038192 170 PLKLILMSATLRVEDFISGGRLFRNPPIIEVPTRQFPVTVHFSKRTEIVDYIGQAYKKVMSIHKRLPQGGILVFVTGQRE 249 (764)
Q Consensus 170 ~lKlILMSATl~~~~f~~~~~~f~~~~vi~i~gr~~pV~~~y~~~~~~~d~l~~~~~~v~~i~~~~~~g~ilvF~~g~~~ 249 (764)
+|+++|||||+|.++|. +||+.+|.+.++||+|||+.+|+ +|++.. +.|+++...
T Consensus 525 dl~v~lmsatIdTd~f~---~~f~~~p~~~~~grt~pvq~F~l-----ed~~~~-----------------~~~vp~~~~ 579 (1282)
T KOG0921|consen 525 DLRVVLMSATIDTDLFT---NFFSSIPDVTVHGRTFPVQSFFL-----EDIIQM-----------------TQFVPSEPS 579 (1282)
T ss_pred hhhhhhhhcccchhhhh---hhhccccceeeccccccHHHHHH-----HHhhhh-----------------hhccCCCcC
Confidence 99999999999999999 79999999999999999999886 343311 123333211
Q ss_pred HHHHHHHHHHHHHHhhhhccccccCCccccCCCCCccccchhHHhHHHHHhhcCcccccccccCCCCCcccccCcccccc
Q 038192 250 VEYLCSKLRKASKQLLVNSSKENKGNQVVADSEPNATKDINMKEINEAFEIQGYSTEQQTDRFSSYDEDQFDIDDNELDA 329 (764)
Q Consensus 250 ie~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~ 329 (764)
-..-+. .. ...+...+... ......+..+..+.. ...++...+ .+.
T Consensus 580 ~~k~k~-~~---------~~~~~~~ddK~-----~n~n~~~dd~~~~~~----------~~am~~~se---------~d~ 625 (1282)
T KOG0921|consen 580 QKKRKK-DD---------DEEDEEVDDKG-----RNMNILCDPSYNEST----------RTAMSRLSE---------KDI 625 (1282)
T ss_pred ccchhh-cc---------cccCchhhhcc-----cccccccChhhcchh----------hhhhhcchh---------hcc
Confidence 000000 00 00000000000 000000000000000 000000000 000
Q ss_pred ccCccchhhhhhccchhhhhhhcCCCCCCCCcccccccchhhhhHHHHHHhhcCCCCCCCccccCCCCCCCCcCCCCCCC
Q 038192 330 LSDSETESETEILGEDEKLVEQKCPMDGDDPVDVLKENWSLGSLKLAFEVLSGKNASGPSSQMKLSTPAIPEQCTELPPT 409 (764)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilvfl~g~~~i~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 409 (764)
+....+. .+.+.+...-++.|++|+|||..|..|..-+...
T Consensus 626 -----~f~l~Ea-----l~~~i~s~~i~gailvflpgwa~i~~L~~~ll~~----------------------------- 666 (1282)
T KOG0921|consen 626 -----PFGLIEA-----LLNDIASRNIDGAVLVFLPGWAEIMTLCNRLLEH----------------------------- 666 (1282)
T ss_pred -----hhHHHHH-----HHhhhcccCCccceeeecCchHHhhhhhhhhhhh-----------------------------
Confidence 0000011 1112244567899999999999887765432221
Q ss_pred CCCCCCCCCCCCccccccCcccCCCCCeEEEecCCCCCHHHHHhhhccCCCCceEEEEecCcccccCCCCCeEEEEeCCc
Q 038192 410 PTPEQCPELSSPDVEKMGDNKRAGVGALCVLPLYAMLPAAAQLRVFEDVKEGERLVVVSTNVAETSLTIPGIKYVVDTGR 489 (764)
Q Consensus 410 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~pLHs~l~~~eQ~~vf~~~~~g~rKVIlsTNIAEtSITIpdV~~VID~G~ 489 (764)
..|.....+.++|+|+.++..+|++||++.|.|++|||++||||||||||+||+||||+|+
T Consensus 667 -------------------~~fg~~~~y~ilp~Hsq~~~~eqrkvf~~~p~gv~kii~stniaetsiTidd~v~vid~ck 727 (1282)
T KOG0921|consen 667 -------------------QEFGQANKYEILPLHSQLTSQEQRKVFEPVPEGVTKIILSTNIAETSITIDDVVYVIDSCK 727 (1282)
T ss_pred -------------------hhhccchhcccccchhhcccHhhhhccCcccccccccccccceeeEeeeecceeEEEeeee
Confidence 0122446789999999999999999999999999999999999999999999999999999
Q ss_pred ccceeeccCCCccccceeeccHHhHHHhccccCCCCCCEEEEccCHHHhcccCCCCCCCcccccChhhHHHHHHHcCCCC
Q 038192 490 EKVKKYNSANGIESYEIQWISKASAAQRAGRAGRTAPGHCYRLYSSAVFNNILPDFSCAEISKVPVDGVVLLMKSMNIDK 569 (764)
Q Consensus 490 ~K~~~yd~~~~~~~l~~~~iSkasa~QR~GRAGR~~~G~cyrLys~~~~~~~l~~~~~PEI~r~~L~~~~L~lk~l~~~~ 569 (764)
+|++.|-..+.+..+.++|.||-+..||+|||||++||.||||+++.+|+ .+.++-+|||.|.||.++.|.+|.+....
T Consensus 728 a~~~~~~s~nn~~~~Atvw~sktn~eqr~gr~grvR~G~~f~lcs~arF~-~l~~~~t~em~r~plhemalTikll~l~S 806 (1282)
T KOG0921|consen 728 AKEKLFTSHNNMTHYATVWASKTNLEQRKGRAGRVRPGFCFHLCSRARFE-ALEDHGTAEMFRTPLHEIALTIKLLRLGS 806 (1282)
T ss_pred eeeeeeccccceeeeeeecccccchHhhcccCceecccccccccHHHHHH-HHHhcCcHhhhcCccHHHHhhHHHHHhhh
Confidence 99999999999999999999999999999999999999999999999997 58999999999999999999999999888
Q ss_pred CCCCC--CCCCCCHHHHHHHHHHHHHcccccCCCCccHHHHHHhcCCCChHHHHHHHHHHhhhhhhhhhhhccchhhhHH
Q 038192 570 VSNFP--FPTPPEVTALVEAERCLKALEALDSNGRLTALGKAMAHYPMSPRHSRMLLTLIQTMKVKSYARANLVLGYGVA 647 (764)
Q Consensus 570 ~~~f~--~~~pP~~~~i~~ai~~L~~lgAld~~~~LT~LG~~la~LPvdp~lgkmLl~~~~~~~~~~~~~~~~~l~~~~~ 647 (764)
+..|. .+.||+.++|..+...|+.++++|.++.+|+||+.++++|+.|+++||++.+..+ . |....+.
T Consensus 807 I~~fl~kal~~~p~dav~e~e~~l~~m~~ld~n~elt~lg~~la~l~iep~~~k~~~lg~~~------g----~~~~m~~ 876 (1282)
T KOG0921|consen 807 IGEFLGKALQPPPYDAVIEAEAVLREMGALDANDELTPLGRMLARLPIEPRIGKMMILGTAL------G----AGSVMCD 876 (1282)
T ss_pred HHHHHhhccCCCchhhccCchHHHHHhhhhhccCcccchhhhhhhccCcccccceeeechhh------c----cchhhhh
Confidence 88875 5999999999999999999999999999999999999999999999999976542 2 2223346
Q ss_pred hhhcccCCcceeeccccccCCCCCchhhhhcccCCCCChhhHHHHhhhhhHHHHHHHHHhhcC-CCCCcHHHHHHHHHHH
Q 038192 648 AAAALSVSNPFVLQLEGTQTNSNDSELEERDNALDSEDPMCRQEKLGKRKLKEVAKLSHAKFS-NPTSDVLTVAYALQCF 726 (764)
Q Consensus 648 iaA~ls~~~~F~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~f~-~~~sD~lt~ln~~~~~ 726 (764)
.|+.+|+..+|+.-+..+ + .+ .. .....++.+|+ |..+||.+.+..++.|
T Consensus 877 ~as~~s~~~~~~~~~~~~-------~-----rl-------~g----------~q~~~~g~kfsdhva~~~v~q~~r~~~q 927 (1282)
T KOG0921|consen 877 VASAMSFPTPFVPREKHH-------S-----RL-------SG----------TQRKFAGNKFSDHVAIVSVIQGYREAVQ 927 (1282)
T ss_pred hhcccccccccccccccc-------c-----cc-------cc----------chhhccccccccchhhhhhhhhhHHHhh
Confidence 788889988887643322 0 00 00 11134567776 5577888888888888
Q ss_pred HhcCCcHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhc
Q 038192 727 ELSKSPVEFCNEYALHLKTMEEMSKLRKQLLHLLFNQ 763 (764)
Q Consensus 727 ~~~~~~~~~C~~~~l~~~~l~~i~~ir~QL~~~l~~~ 763 (764)
..+....+||..++++...|.+...+|.||+++|+..
T Consensus 928 ~ga~~e~efc~r~~l~~~~~~~t~~a~~ql~d~L~q~ 964 (1282)
T KOG0921|consen 928 MGAAAEREFCERYSLSNPVLKMTDGARRQLIDVLRQC 964 (1282)
T ss_pred hhhhhhhhHhHhhhhcchhhhhhhhhHHHHHHHHHhc
Confidence 7776788999999999999999999999999999853
No 13
>PHA02653 RNA helicase NPH-II; Provisional
Probab=100.00 E-value=1.3e-61 Score=563.11 Aligned_cols=393 Identities=22% Similarity=0.299 Sum_probs=293.9
Q ss_pred CCCchhhHHHHHHHHHcCCeEEEEecCCCCccccHHHHHHHhc-----cCCCC---CCCCCceEEEecccHHHHHHHHHH
Q 038192 33 DLPIVMMEQEIMEAVNDNSAVIICGETGCGKTTQVPQFLFEAG-----FGSNR---CSSRSGRIGVTQPRRVAVLATAKR 104 (764)
Q Consensus 33 ~LPi~~~~~~Il~~l~~~~vviI~GeTGSGKTTqvPq~Lle~~-----~~~~~---~~~~~~~Ii~tQPRRiaAisvA~R 104 (764)
+|.... |+++++.+.+++++|++|+|||||||||||||++.. +..-. .....++|+|+||||.+|.+++.+
T Consensus 163 ~~~~~i-Q~qil~~i~~gkdvIv~A~TGSGKTtqvPq~l~~~~flf~~l~~l~~~~~~~~~~~ilvt~PrreLa~qi~~~ 241 (675)
T PHA02653 163 SLQPDV-QLKIFEAWISRKPVVLTGGTGVGKTSQVPKLLLWFNYLFGGFDNLDKIDPNFIERPIVLSLPRVALVRLHSIT 241 (675)
T ss_pred chhHHH-HHHHHHHHHhCCCEEEECCCCCCchhHHHHHHHHhhhccchhhhhhhcccccCCcEEEEECcHHHHHHHHHHH
Confidence 444433 558999999999999999999999999999999852 21100 011246899999999999999999
Q ss_pred HHHHhCCCCCCEeeEEeccCcccC-------CCceEEEEchHHHHHHHHH----HHHHHHHHHhhcc-ccCCc-cCCCC-
Q 038192 105 VAFELGLHLGKEVGFQVRHDKKIG-------DSCSIKFMTDGILLRELKA----LYEKQQQLLRSGQ-CIEPK-DRVFP- 170 (764)
Q Consensus 105 Va~E~g~~lG~~VGY~ir~e~~~s-------~~t~I~f~T~GiLLr~l~~----i~de~~~~l~~~~-~~~~~-~~~~~- 170 (764)
+.++.|......+.+.+++++..+ ..+.|+++|+|..++.|.. |+||+|++...+. +..+. ...+.
T Consensus 242 i~~~vg~~~~~g~~v~v~~Gg~~~~~~~t~~k~~~Ilv~T~~L~l~~L~~v~~VVIDEaHEr~~~~DllL~llk~~~~~~ 321 (675)
T PHA02653 242 LLKSLGFDEIDGSPISLKYGSIPDELINTNPKPYGLVFSTHKLTLNKLFDYGTVIIDEVHEHDQIGDIIIAVARKHIDKI 321 (675)
T ss_pred HHHHhCccccCCceEEEEECCcchHHhhcccCCCCEEEEeCcccccccccCCEEEccccccCccchhHHHHHHHHhhhhc
Confidence 988776532222445667765542 2356999999976666644 6799987544332 11111 11112
Q ss_pred ceEEEeeccc--chhhhccccCCCCCCCeeeeCCcc-cceeEEecCCCc----hhhHHHHHHHHHHHHhhc---CCCCCe
Q 038192 171 LKLILMSATL--RVEDFISGGRLFRNPPIIEVPTRQ-FPVTVHFSKRTE----IVDYIGQAYKKVMSIHKR---LPQGGI 240 (764)
Q Consensus 171 lKlILMSATl--~~~~f~~~~~~f~~~~vi~i~gr~-~pV~~~y~~~~~----~~d~l~~~~~~v~~i~~~---~~~g~i 240 (764)
.|+|+||||+ +++.|. +||+++++|+++|++ |||+.+|.+... ..+|+......+...+.. ...|++
T Consensus 322 rq~ILmSATl~~dv~~l~---~~~~~p~~I~I~grt~~pV~~~yi~~~~~~~~~~~y~~~~k~~~l~~L~~~~~~~~g~i 398 (675)
T PHA02653 322 RSLFLMTATLEDDRDRIK---EFFPNPAFVHIPGGTLFPISEVYVKNKYNPKNKRAYIEEEKKNIVTALKKYTPPKGSSG 398 (675)
T ss_pred CEEEEEccCCcHhHHHHH---HHhcCCcEEEeCCCcCCCeEEEEeecCcccccchhhhHHHHHHHHHHHHHhhcccCCcE
Confidence 3899999999 567886 699999999999996 999999975431 123333322223333322 124567
Q ss_pred EEecCCHHHHHHHHHHHHHHHHHhhhhccccccCCccccCCCCCccccchhHHhHHHHHhhcCcccccccccCCCCCccc
Q 038192 241 LVFVTGQREVEYLCSKLRKASKQLLVNSSKENKGNQVVADSEPNATKDINMKEINEAFEIQGYSTEQQTDRFSSYDEDQF 320 (764)
Q Consensus 241 lvF~~g~~~ie~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~ 320 (764)
|||+++..+++.+++.|++
T Consensus 399 LVFlpg~~ei~~l~~~L~~------------------------------------------------------------- 417 (675)
T PHA02653 399 IVFVASVSQCEEYKKYLEK------------------------------------------------------------- 417 (675)
T ss_pred EEEECcHHHHHHHHHHHHh-------------------------------------------------------------
Confidence 7777777777666555532
Q ss_pred ccCccccccccCccchhhhhhccchhhhhhhcCCCCCCCCcccccccchhhhhHHHHHHhhcCCCCCCCccccCCCCCCC
Q 038192 321 DIDDNELDALSDSETESETEILGEDEKLVEQKCPMDGDDPVDVLKENWSLGSLKLAFEVLSGKNASGPSSQMKLSTPAIP 400 (764)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilvfl~g~~~i~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~ 400 (764)
.
T Consensus 418 -----------------------------------------------------------~-------------------- 418 (675)
T PHA02653 418 -----------------------------------------------------------R-------------------- 418 (675)
T ss_pred -----------------------------------------------------------h--------------------
Confidence 0
Q ss_pred CcCCCCCCCCCCCCCCCCCCCccccccCcccCCCCCeEEEecCCCCCHHHH--HhhhccCCCCceEEEEecCcccccCCC
Q 038192 401 EQCTELPPTPTPEQCPELSSPDVEKMGDNKRAGVGALCVLPLYAMLPAAAQ--LRVFEDVKEGERLVVVSTNVAETSLTI 478 (764)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~pLHs~l~~~eQ--~~vf~~~~~g~rKVIlsTNIAEtSITI 478 (764)
.+++.+++|||+|++.+| .++| ++|++|||||||||||||||
T Consensus 419 ---------------------------------~~~~~v~~LHG~Lsq~eq~l~~ff---~~gk~kILVATdIAERGIDI 462 (675)
T PHA02653 419 ---------------------------------LPIYDFYIIHGKVPNIDEILEKVY---SSKNPSIIISTPYLESSVTI 462 (675)
T ss_pred ---------------------------------cCCceEEeccCCcCHHHHHHHHHh---ccCceeEEeccChhhccccc
Confidence 013679999999998755 3333 56899999999999999999
Q ss_pred CCeEEEEeCCcccceeeccCCCccccceeeccHHhHHHhccccCCCCCCEEEEccCHHHhcccCCCCCCCcccccC---h
Q 038192 479 PGIKYVVDTGREKVKKYNSANGIESYEIQWISKASAAQRAGRAGRTAPGHCYRLYSSAVFNNILPDFSCAEISKVP---V 555 (764)
Q Consensus 479 pdV~~VID~G~~K~~~yd~~~~~~~l~~~~iSkasa~QR~GRAGR~~~G~cyrLys~~~~~~~l~~~~~PEI~r~~---L 555 (764)
|||+||||+|++|... +..++ ..|||+|+|.||+|||||+++|.|||||+++.+ .| |.|++ |
T Consensus 463 p~V~~VID~G~~k~p~--~~~g~----~~~iSkasa~QRaGRAGR~~~G~c~rLyt~~~~--------~p-I~ri~~~~L 527 (675)
T PHA02653 463 RNATHVYDTGRVYVPE--PFGGK----EMFISKSMRTQRKGRVGRVSPGTYVYFYDLDLL--------KP-IKRIDSEFL 527 (675)
T ss_pred cCeeEEEECCCccCCC--cccCc----ccccCHHHHHHhccCcCCCCCCeEEEEECHHHh--------HH-HHHHhHHHH
Confidence 9999999999988663 33443 579999999999999999999999999999864 24 77777 8
Q ss_pred hhHHHHHHHcCCCCCCCCCCCCCCCHHHHHHHHHHHHHcccccCCCCccHH--HHHHhcCCCChHHHHHHHHHH
Q 038192 556 DGVVLLMKSMNIDKVSNFPFPTPPEVTALVEAERCLKALEALDSNGRLTAL--GKAMAHYPMSPRHSRMLLTLI 627 (764)
Q Consensus 556 ~~~~L~lk~l~~~~~~~f~~~~pP~~~~i~~ai~~L~~lgAld~~~~LT~L--G~~la~LPvdp~lgkmLl~~~ 627 (764)
.+++|++|+||++.. .+.|++||+.+++.+|++.|..+||+|+ +||.| |++|+.| ++||++++|.
T Consensus 528 ~~~vL~lk~~g~~~~-~~~~ldpP~~~~l~~A~~~L~~lga~~~--~l~~l~~~~~~~~~----~~~k~~~~g~ 594 (675)
T PHA02653 528 HNYILYAKYFNLTLP-EDLFVIPSNLDRLRKTEEYIDSFNISIE--KWYEILSNYYVNML----EYAKIYVKGG 594 (675)
T ss_pred HHHHHHHHHcCCCCc-ccccCCCCCHHHHHHHHHHHHHcCCCch--hhhhhhccccHHHH----HHhHHHhccc
Confidence 899999999999654 4559999999999999999999999865 89999 9999999 9999999874
No 14
>PRK01172 ski2-like helicase; Provisional
Probab=100.00 E-value=1.8e-33 Score=334.91 Aligned_cols=416 Identities=17% Similarity=0.182 Sum_probs=271.2
Q ss_pred CCchhhHHHHHHHHHcCCeEEEEecCCCCccccHHHHHHHhccCCCCCCCCCceEEEecccHHHHHHHHHHHHHHhCCCC
Q 038192 34 LPIVMMEQEIMEAVNDNSAVIICGETGCGKTTQVPQFLFEAGFGSNRCSSRSGRIGVTQPRRVAVLATAKRVAFELGLHL 113 (764)
Q Consensus 34 LPi~~~~~~Il~~l~~~~vviI~GeTGSGKTTqvPq~Lle~~~~~~~~~~~~~~Ii~tQPRRiaAisvA~RVa~E~g~~l 113 (764)
...+.+|.++++++.+++.++++++||||||++..+.+++..... .++++..|+|..|.+.++++.. +. .+
T Consensus 21 ~~l~~~Q~~ai~~l~~~~nvlv~apTGSGKTl~a~lail~~l~~~-------~k~v~i~P~raLa~q~~~~~~~-l~-~~ 91 (674)
T PRK01172 21 FELYDHQRMAIEQLRKGENVIVSVPTAAGKTLIAYSAIYETFLAG-------LKSIYIVPLRSLAMEKYEELSR-LR-SL 91 (674)
T ss_pred CCCCHHHHHHHHHHhcCCcEEEECCCCchHHHHHHHHHHHHHHhC-------CcEEEEechHHHHHHHHHHHHH-Hh-hc
Confidence 446889999999999999999999999999999999888764322 3566777999999998887764 22 45
Q ss_pred CCEeeEEeccCccc---CCCceEEEEchHHHHHHHH-------H----HHHHHHHHHhhcc-------ccCCccCCCCce
Q 038192 114 GKEVGFQVRHDKKI---GDSCSIKFMTDGILLRELK-------A----LYEKQQQLLRSGQ-------CIEPKDRVFPLK 172 (764)
Q Consensus 114 G~~VGY~ir~e~~~---s~~t~I~f~T~GiLLr~l~-------~----i~de~~~~l~~~~-------~~~~~~~~~~lK 172 (764)
|..|++.+...+.. -...+|++||+|.+...+. . |+||+|.+...+. +.......+++|
T Consensus 92 g~~v~~~~G~~~~~~~~~~~~dIiv~Tpek~~~l~~~~~~~l~~v~lvViDEaH~l~d~~rg~~le~ll~~~~~~~~~~r 171 (674)
T PRK01172 92 GMRVKISIGDYDDPPDFIKRYDVVILTSEKADSLIHHDPYIINDVGLIVADEIHIIGDEDRGPTLETVLSSARYVNPDAR 171 (674)
T ss_pred CCeEEEEeCCCCCChhhhccCCEEEECHHHHHHHHhCChhHHhhcCEEEEecchhccCCCccHHHHHHHHHHHhcCcCCc
Confidence 77777766432211 1467899999998766542 1 5688886532211 111112346899
Q ss_pred EEEeeccc-chhhhccccCCCCCCCeeeeCCcccceeEE--ecCCCchhhHH---HHHHHHHHHHhhcCCCCCeEEecCC
Q 038192 173 LILMSATL-RVEDFISGGRLFRNPPIIEVPTRQFPVTVH--FSKRTEIVDYI---GQAYKKVMSIHKRLPQGGILVFVTG 246 (764)
Q Consensus 173 lILMSATl-~~~~f~~~~~~f~~~~vi~i~gr~~pV~~~--y~~~~~~~d~l---~~~~~~v~~i~~~~~~g~ilvF~~g 246 (764)
+|+||||+ +++.+. ++++ ++.+....|..|+++. |.......+.. ......+.+.. ...+++|||+++
T Consensus 172 iI~lSATl~n~~~la---~wl~-~~~~~~~~r~vpl~~~i~~~~~~~~~~~~~~~~~~~~~i~~~~--~~~~~vLVF~~s 245 (674)
T PRK01172 172 ILALSATVSNANELA---QWLN-ASLIKSNFRPVPLKLGILYRKRLILDGYERSQVDINSLIKETV--NDGGQVLVFVSS 245 (674)
T ss_pred EEEEeCccCCHHHHH---HHhC-CCccCCCCCCCCeEEEEEecCeeeecccccccccHHHHHHHHH--hCCCcEEEEecc
Confidence 99999999 788887 4664 4556666777777642 22111100000 00111111111 246789999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhhccccccCCccccCCCCCccccchhHHhHHHHHhhcCcccccccccCCCCCcccccCccc
Q 038192 247 QREVEYLCSKLRKASKQLLVNSSKENKGNQVVADSEPNATKDINMKEINEAFEIQGYSTEQQTDRFSSYDEDQFDIDDNE 326 (764)
Q Consensus 247 ~~~ie~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~ 326 (764)
+++++.++..|....... .. +....++
T Consensus 246 r~~~~~~a~~L~~~~~~~---------~~------------------------------------~~~~~~~-------- 272 (674)
T PRK01172 246 RKNAEDYAEMLIQHFPEF---------ND------------------------------------FKVSSEN-------- 272 (674)
T ss_pred HHHHHHHHHHHHHhhhhc---------cc------------------------------------ccccccc--------
Confidence 999999988886532100 00 0000000
Q ss_pred cccccCccchhhhhhccchhhhhhhcCCCCCCCCcccccccchhhhhHHHHHHhhcCCCCCCCccccCCCCCCCCcCCCC
Q 038192 327 LDALSDSETESETEILGEDEKLVEQKCPMDGDDPVDVLKENWSLGSLKLAFEVLSGKNASGPSSQMKLSTPAIPEQCTEL 406 (764)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilvfl~g~~~i~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (764)
. . .....+..+
T Consensus 273 -------~------------~------------------------~~~~~L~~~-------------------------- 283 (674)
T PRK01172 273 -------N------------N------------------------VYDDSLNEM-------------------------- 283 (674)
T ss_pred -------c------------c------------------------cccHHHHHH--------------------------
Confidence 0 0 000000000
Q ss_pred CCCCCCCCCCCCCCCccccccCcccCCCCCeEEEecCCCCCHHHHHhhhccCCCCceEEEEecCcccccCCCCCeEEEEe
Q 038192 407 PPTPTPEQCPELSSPDVEKMGDNKRAGVGALCVLPLYAMLPAAAQLRVFEDVKEGERLVVVSTNVAETSLTIPGIKYVVD 486 (764)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~pLHs~l~~~eQ~~vf~~~~~g~rKVIlsTNIAEtSITIpdV~~VID 486 (764)
-...|..+||+|++++|..+++.|++|..+||+||+++++||+||+..+||+
T Consensus 284 ----------------------------l~~gv~~~hagl~~~eR~~ve~~f~~g~i~VLvaT~~la~Gvnipa~~VII~ 335 (674)
T PRK01172 284 ----------------------------LPHGVAFHHAGLSNEQRRFIEEMFRNRYIKVIVATPTLAAGVNLPARLVIVR 335 (674)
T ss_pred ----------------------------HhcCEEEecCCCCHHHHHHHHHHHHcCCCeEEEecchhhccCCCcceEEEEc
Confidence 0123778899999999999999999999999999999999999999988885
Q ss_pred CCcccceeeccCCCccccceeeccHHhHHHhccccCCCC---CCEEEEcc-CHH---HhcccCCCCCCC--------ccc
Q 038192 487 TGREKVKKYNSANGIESYEIQWISKASAAQRAGRAGRTA---PGHCYRLY-SSA---VFNNILPDFSCA--------EIS 551 (764)
Q Consensus 487 ~G~~K~~~yd~~~~~~~l~~~~iSkasa~QR~GRAGR~~---~G~cyrLy-s~~---~~~~~l~~~~~P--------EI~ 551 (764)
. . ..|+. ....++|.+++.||+|||||.+ .|.|+-+. +.. .|.+.+...+.| ++.
T Consensus 336 ~-~---~~~~~------~~~~~~s~~~~~Qm~GRAGR~g~d~~g~~~i~~~~~~~~~~~~~~l~~~~~pi~S~l~~~~~~ 405 (674)
T PRK01172 336 D-I---TRYGN------GGIRYLSNMEIKQMIGRAGRPGYDQYGIGYIYAASPASYDAAKKYLSGEPEPVISYMGSQRKV 405 (674)
T ss_pred C-c---eEeCC------CCceeCCHHHHHHHhhcCCCCCCCCcceEEEEecCcccHHHHHHHHcCCCCceeecCCCcccH
Confidence 2 1 23432 2235799999999999999987 46666553 322 233334322222 333
Q ss_pred ccChhhHHHHHHHcCC----CCCCCC---CC--CCCCC---HHHHHHHHHHHHHcccccCCC--CccHHHHHHhcCCCCh
Q 038192 552 KVPVDGVVLLMKSMNI----DKVSNF---PF--PTPPE---VTALVEAERCLKALEALDSNG--RLTALGKAMAHYPMSP 617 (764)
Q Consensus 552 r~~L~~~~L~lk~l~~----~~~~~f---~~--~~pP~---~~~i~~ai~~L~~lgAld~~~--~LT~LG~~la~LPvdp 617 (764)
+.. +|...+.|. .++.+| .| .++++ .+.+..|++.|...|+|+.++ .+|++|+.++.+|++|
T Consensus 406 ~~~----~l~~i~~g~~~~~~d~~~~l~~tf~~~~~~~~~l~~~v~~~l~~L~~~~~i~~~~~~~~t~lG~~~s~~~l~~ 481 (674)
T PRK01172 406 RFN----TLAAISMGLASSMEDLILFYNETLMAIQNGVDEIDYYIESSLKFLKENGFIKGDVTLRATRLGKLTSDLYIDP 481 (674)
T ss_pred HHH----HHHHHHhcccCCHHHHHHHHHhhhhHhcCchHHHHHHHHHHHHHHHHCCCcccCCcEeECHHHHHHHHhCCCH
Confidence 332 233334332 344444 23 35432 567899999999999998654 6799999999999999
Q ss_pred HHHHHHHHHHh
Q 038192 618 RHSRMLLTLIQ 628 (764)
Q Consensus 618 ~lgkmLl~~~~ 628 (764)
..++++..++.
T Consensus 482 ~t~~~~~~~l~ 492 (674)
T PRK01172 482 ESALILKSAFD 492 (674)
T ss_pred HHHHHHHHHhh
Confidence 99999987653
No 15
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.9e-32 Score=285.49 Aligned_cols=303 Identities=23% Similarity=0.274 Sum_probs=223.7
Q ss_pred cCCCchhhHHHHHHHHHcCCeEEEEecCCCCccccHHHHHHHhccCCCCCCCCCceEEEecccHHHHHHHHHHHHHHhCC
Q 038192 32 KDLPIVMMEQEIMEAVNDNSAVIICGETGCGKTTQVPQFLFEAGFGSNRCSSRSGRIGVTQPRRVAVLATAKRVAFELGL 111 (764)
Q Consensus 32 ~~LPi~~~~~~Il~~l~~~~vviI~GeTGSGKTTqvPq~Lle~~~~~~~~~~~~~~Ii~tQPRRiaAisvA~RVa~E~g~ 111 (764)
-..|...+++.|.-++.+.+ ||+.++||||||-.+-.+|++..+..++ ....+|.-|+|..|.|+|+ +.+-+|.
T Consensus 81 ~~~PT~IQ~~aiP~~L~g~d-vIglAeTGSGKT~afaLPIl~~LL~~p~----~~~~lVLtPtRELA~QI~e-~fe~Lg~ 154 (476)
T KOG0330|consen 81 WKKPTKIQSEAIPVALGGRD-VIGLAETGSGKTGAFALPILQRLLQEPK----LFFALVLTPTRELAQQIAE-QFEALGS 154 (476)
T ss_pred cCCCchhhhhhcchhhCCCc-EEEEeccCCCchhhhHHHHHHHHHcCCC----CceEEEecCcHHHHHHHHH-HHHHhcc
Confidence 45788888888888887777 6778999999999998899988887654 4688999999999999999 7788888
Q ss_pred CCCCEeeEEeccCcc------cCCCceEEEEchHHHHHHHHH------------HHHHHHHHHhhccccCC---c-cCCC
Q 038192 112 HLGKEVGFQVRHDKK------IGDSCSIKFMTDGILLRELKA------------LYEKQQQLLRSGQCIEP---K-DRVF 169 (764)
Q Consensus 112 ~lG~~VGY~ir~e~~------~s~~t~I~f~T~GiLLr~l~~------------i~de~~~~l~~~~~~~~---~-~~~~ 169 (764)
.+|-.|---+.+.+. .+++.+|+++|||.|.+++.. |+||+++.++.+|...+ + ...+
T Consensus 155 ~iglr~~~lvGG~~m~~q~~~L~kkPhilVaTPGrL~dhl~~Tkgf~le~lk~LVlDEADrlLd~dF~~~ld~ILk~ip~ 234 (476)
T KOG0330|consen 155 GIGLRVAVLVGGMDMMLQANQLSKKPHILVATPGRLWDHLENTKGFSLEQLKFLVLDEADRLLDMDFEEELDYILKVIPR 234 (476)
T ss_pred ccCeEEEEEecCchHHHHHHHhhcCCCEEEeCcHHHHHHHHhccCccHHHhHHHhhchHHhhhhhhhHHHHHHHHHhcCc
Confidence 888665555554443 367899999999999999942 78999999888774322 1 2346
Q ss_pred CceEEEeeccc--chhhhccccCCCCCCCeeeeCCcccceeEEecCCCchhhHHHHHHHHHHHHhhcCCCCCeEEecCCH
Q 038192 170 PLKLILMSATL--RVEDFISGGRLFRNPPIIEVPTRQFPVTVHFSKRTEIVDYIGQAYKKVMSIHKRLPQGGILVFVTGQ 247 (764)
Q Consensus 170 ~lKlILMSATl--~~~~f~~~~~~f~~~~vi~i~gr~~pV~~~y~~~~~~~d~l~~~~~~v~~i~~~~~~g~ilvF~~g~ 247 (764)
..|.+|+|||| .+.++.. --..++..+.++.+.--| +-+ .+ -..|++++
T Consensus 235 erqt~LfsATMt~kv~kL~r--asl~~p~~v~~s~ky~tv-----------~~l-------kQ---------~ylfv~~k 285 (476)
T KOG0330|consen 235 ERQTFLFSATMTKKVRKLQR--ASLDNPVKVAVSSKYQTV-----------DHL-------KQ---------TYLFVPGK 285 (476)
T ss_pred cceEEEEEeecchhhHHHHh--hccCCCeEEeccchhcch-----------HHh-------hh---------heEecccc
Confidence 78999999999 4445442 223444444444331111 111 11 12455554
Q ss_pred HHHHHHHHHHHHHHHHhhhhccccccCCccccCCCCCccccchhHHhHHHHHhhcCcccccccccCCCCCcccccCcccc
Q 038192 248 REVEYLCSKLRKASKQLLVNSSKENKGNQVVADSEPNATKDINMKEINEAFEIQGYSTEQQTDRFSSYDEDQFDIDDNEL 327 (764)
Q Consensus 248 ~~ie~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~ 327 (764)
...-++...|..
T Consensus 286 ~K~~yLV~ll~e-------------------------------------------------------------------- 297 (476)
T KOG0330|consen 286 DKDTYLVYLLNE-------------------------------------------------------------------- 297 (476)
T ss_pred ccchhHHHHHHh--------------------------------------------------------------------
Confidence 433333333321
Q ss_pred ccccCccchhhhhhccchhhhhhhcCCCCCCCCcccccccchhhhhHHHHHHhhcCCCCCCCccccCCCCCCCCcCCCCC
Q 038192 328 DALSDSETESETEILGEDEKLVEQKCPMDGDDPVDVLKENWSLGSLKLAFEVLSGKNASGPSSQMKLSTPAIPEQCTELP 407 (764)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilvfl~g~~~i~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 407 (764)
..+++++||...+.....+...++.+
T Consensus 298 ---------------------------~~g~s~iVF~~t~~tt~~la~~L~~l--------------------------- 323 (476)
T KOG0330|consen 298 ---------------------------LAGNSVIVFCNTCNTTRFLALLLRNL--------------------------- 323 (476)
T ss_pred ---------------------------hcCCcEEEEEeccchHHHHHHHHHhc---------------------------
Confidence 11355677777776666666655543
Q ss_pred CCCCCCCCCCCCCCccccccCcccCCCCCeEEEecCCCCCHHHHHhhhccCCCCceEEEEecCcccccCCCCCeEEEEeC
Q 038192 408 PTPTPEQCPELSSPDVEKMGDNKRAGVGALCVLPLYAMLPAAAQLRVFEDVKEGERLVVVSTNVAETSLTIPGIKYVVDT 487 (764)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~pLHs~l~~~eQ~~vf~~~~~g~rKVIlsTNIAEtSITIpdV~~VID~ 487 (764)
++..+||||.|++..|...|+.|+.|.|.|++|||||.||++||.|..|||
T Consensus 324 ----------------------------g~~a~~LhGqmsq~~Rlg~l~~Fk~~~r~iLv~TDVaSRGLDip~Vd~VVN- 374 (476)
T KOG0330|consen 324 ----------------------------GFQAIPLHGQMSQSKRLGALNKFKAGARSILVCTDVASRGLDIPHVDVVVN- 374 (476)
T ss_pred ----------------------------CcceecccchhhHHHHHHHHHHHhccCCcEEEecchhcccCCCCCceEEEe-
Confidence 578999999999999999999999999999999999999999999999998
Q ss_pred CcccceeeccCCCccccceeeccHHhHHHhccccCCCCC-CEEEEccCHHH
Q 038192 488 GREKVKKYNSANGIESYEIQWISKASAAQRAGRAGRTAP-GHCYRLYSSAV 537 (764)
Q Consensus 488 G~~K~~~yd~~~~~~~l~~~~iSkasa~QR~GRAGR~~~-G~cyrLys~~~ 537 (764)
||-+.. -..|.||+||+||+|. |+.+.|.|+.+
T Consensus 375 -------yDiP~~----------skDYIHRvGRtaRaGrsG~~ItlVtqyD 408 (476)
T KOG0330|consen 375 -------YDIPTH----------SKDYIHRVGRTARAGRSGKAITLVTQYD 408 (476)
T ss_pred -------cCCCCc----------HHHHHHHcccccccCCCcceEEEEehhh
Confidence 775544 4566799999999996 99999999943
No 16
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.97 E-value=4.4e-31 Score=293.31 Aligned_cols=310 Identities=20% Similarity=0.308 Sum_probs=211.0
Q ss_pred CCCchhhHHHHHHHHHcCCeEEEEecCCCCcccc--HHHHHHHhccCCCCCCCCCceEEEecccHHHHHHHHHHHHHHhC
Q 038192 33 DLPIVMMEQEIMEAVNDNSAVIICGETGCGKTTQ--VPQFLFEAGFGSNRCSSRSGRIGVTQPRRVAVLATAKRVAFELG 110 (764)
Q Consensus 33 ~LPi~~~~~~Il~~l~~~~vviI~GeTGSGKTTq--vPq~Lle~~~~~~~~~~~~~~Ii~tQPRRiaAisvA~RVa~E~g 110 (764)
.-|...+.+.+.-++...+ +|..+.||||||.. +|-+..=.........+...+++|.-|+|.+|.+|.+ ++.+.+
T Consensus 112 ~~PtpIQaq~wp~~l~GrD-~v~iA~TGSGKTLay~lP~i~~l~~~~~~~~~~~~P~vLVL~PTRELA~QV~~-~~~~~~ 189 (519)
T KOG0331|consen 112 EKPTPIQAQGWPIALSGRD-LVGIARTGSGKTLAYLLPAIVHLNNEQGKLSRGDGPIVLVLAPTRELAVQVQA-EAREFG 189 (519)
T ss_pred CCCchhhhcccceeccCCc-eEEEeccCCcchhhhhhHHHHHHHhccccccCCCCCeEEEEcCcHHHHHHHHH-HHHHHc
Confidence 4567666666666666655 67779999999986 5544332211111111234689999999999999977 888888
Q ss_pred CCCC--CEeeEE-eccC---cccCCCceEEEEchHHHHHHHHH-----------HHHHHHHHHhhccccCC----ccC-C
Q 038192 111 LHLG--KEVGFQ-VRHD---KKIGDSCSIKFMTDGILLRELKA-----------LYEKQQQLLRSGQCIEP----KDR-V 168 (764)
Q Consensus 111 ~~lG--~~VGY~-ir~e---~~~s~~t~I~f~T~GiLLr~l~~-----------i~de~~~~l~~~~~~~~----~~~-~ 168 (764)
..++ ..|=|+ ++.. ........|+++|||+|+++|.. ++||+|+|+++||--.+ ... +
T Consensus 190 ~~~~~~~~cvyGG~~~~~Q~~~l~~gvdiviaTPGRl~d~le~g~~~l~~v~ylVLDEADrMldmGFe~qI~~Il~~i~~ 269 (519)
T KOG0331|consen 190 KSLRLRSTCVYGGAPKGPQLRDLERGVDVVIATPGRLIDLLEEGSLNLSRVTYLVLDEADRMLDMGFEPQIRKILSQIPR 269 (519)
T ss_pred CCCCccEEEEeCCCCccHHHHHHhcCCcEEEeCChHHHHHHHcCCccccceeEEEeccHHhhhccccHHHHHHHHHhcCC
Confidence 8877 333332 2211 22345678999999999999953 78999999999984332 222 3
Q ss_pred CCceEEEeecccc--hhhhccccCCCCCCCeeeeCCcc-cceeEEecCCCchhhHH--HHHHHHHHHHhhcCCCCCeEEe
Q 038192 169 FPLKLILMSATLR--VEDFISGGRLFRNPPIIEVPTRQ-FPVTVHFSKRTEIVDYI--GQAYKKVMSIHKRLPQGGILVF 243 (764)
Q Consensus 169 ~~lKlILMSATl~--~~~f~~~~~~f~~~~vi~i~gr~-~pV~~~y~~~~~~~d~l--~~~~~~v~~i~~~~~~g~ilvF 243 (764)
++-++++.|||.. +..|++ +|.+++-.+.+-+.. .........-....+.. .+....++..+...++|.+|||
T Consensus 270 ~~rQtlm~saTwp~~v~~lA~--~fl~~~~~i~ig~~~~~~a~~~i~qive~~~~~~K~~~l~~lL~~~~~~~~~KvIIF 347 (519)
T KOG0331|consen 270 PDRQTLMFSATWPKEVRQLAE--DFLNNPIQINVGNKKELKANHNIRQIVEVCDETAKLRKLGKLLEDISSDSEGKVIIF 347 (519)
T ss_pred CcccEEEEeeeccHHHHHHHH--HHhcCceEEEecchhhhhhhcchhhhhhhcCHHHHHHHHHHHHHHHhccCCCcEEEE
Confidence 4447999999994 455555 677665555554331 10000000000001100 0111122222334456677777
Q ss_pred cCCHHHHHHHHHHHHHHHHHhhhhccccccCCccccCCCCCccccchhHHhHHHHHhhcCcccccccccCCCCCcccccC
Q 038192 244 VTGQREVEYLCSKLRKASKQLLVNSSKENKGNQVVADSEPNATKDINMKEINEAFEIQGYSTEQQTDRFSSYDEDQFDID 323 (764)
Q Consensus 244 ~~g~~~ie~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~ 323 (764)
+..++.++.+...+++
T Consensus 348 c~tkr~~~~l~~~l~~---------------------------------------------------------------- 363 (519)
T KOG0331|consen 348 CETKRTCDELARNLRR---------------------------------------------------------------- 363 (519)
T ss_pred ecchhhHHHHHHHHHh----------------------------------------------------------------
Confidence 7777766655443321
Q ss_pred ccccccccCccchhhhhhccchhhhhhhcCCCCCCCCcccccccchhhhhHHHHHHhhcCCCCCCCccccCCCCCCCCcC
Q 038192 324 DNELDALSDSETESETEILGEDEKLVEQKCPMDGDDPVDVLKENWSLGSLKLAFEVLSGKNASGPSSQMKLSTPAIPEQC 403 (764)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilvfl~g~~~i~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 403 (764)
T Consensus 364 -------------------------------------------------------------------------------- 363 (519)
T KOG0331|consen 364 -------------------------------------------------------------------------------- 363 (519)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCCCCCCCCCCCccccccCcccCCCCCeEEEecCCCCCHHHHHhhhccCCCCceEEEEecCcccccCCCCCeEE
Q 038192 404 TELPPTPTPEQCPELSSPDVEKMGDNKRAGVGALCVLPLYAMLPAAAQLRVFEDVKEGERLVVVSTNVAETSLTIPGIKY 483 (764)
Q Consensus 404 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~pLHs~l~~~eQ~~vf~~~~~g~rKVIlsTNIAEtSITIpdV~~ 483 (764)
..+....+||.+++.||..+++.|+.|...|+||||+|.+||+||||++
T Consensus 364 -------------------------------~~~~a~~iHGd~sQ~eR~~~L~~FreG~~~vLVATdVAaRGLDi~dV~l 412 (519)
T KOG0331|consen 364 -------------------------------KGWPAVAIHGDKSQSERDWVLKGFREGKSPVLVATDVAARGLDVPDVDL 412 (519)
T ss_pred -------------------------------cCcceeeecccccHHHHHHHHHhcccCCcceEEEcccccccCCCccccE
Confidence 1256889999999999999999999999999999999999999999999
Q ss_pred EEeCCcccceeeccCCCccccceeeccHHhHHHhccccCCCCC-CEEEEccCHHHhc
Q 038192 484 VVDTGREKVKKYNSANGIESYEIQWISKASAAQRAGRAGRTAP-GHCYRLYSSAVFN 539 (764)
Q Consensus 484 VID~G~~K~~~yd~~~~~~~l~~~~iSkasa~QR~GRAGR~~~-G~cyrLys~~~~~ 539 (764)
||+ ||++.+++.|+ ||.||+||.+. |..|-+|+...+.
T Consensus 413 VIn--------ydfP~~vEdYV----------HRiGRTGRa~~~G~A~tfft~~~~~ 451 (519)
T KOG0331|consen 413 VIN--------YDFPNNVEDYV----------HRIGRTGRAGKKGTAITFFTSDNAK 451 (519)
T ss_pred EEe--------CCCCCCHHHHH----------hhcCccccCCCCceEEEEEeHHHHH
Confidence 997 99998887766 99999999665 9999999998774
No 17
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=99.97 E-value=5.3e-30 Score=292.41 Aligned_cols=296 Identities=19% Similarity=0.204 Sum_probs=207.9
Q ss_pred hhHHHHHHHHHcCCeEEEEecCCCCccccHHHHHHHhccCCCCCCCCCceEEEecccHHHHHHHHHHHHHHhCCCC-CCE
Q 038192 38 MMEQEIMEAVNDNSAVIICGETGCGKTTQVPQFLFEAGFGSNRCSSRSGRIGVTQPRRVAVLATAKRVAFELGLHL-GKE 116 (764)
Q Consensus 38 ~~~~~Il~~l~~~~vviI~GeTGSGKTTqvPq~Lle~~~~~~~~~~~~~~Ii~tQPRRiaAisvA~RVa~E~g~~l-G~~ 116 (764)
..|++.+..+.+++.++++|+||||||+.+...+++...... ..+++++.-|+|.+|.++++.+.. ++... +..
T Consensus 29 ~iQ~~ai~~~l~g~dvi~~a~TGsGKT~a~~lpil~~l~~~~----~~~~~lil~PtreLa~Q~~~~~~~-~~~~~~~~~ 103 (460)
T PRK11776 29 PIQAQSLPAILAGKDVIAQAKTGSGKTAAFGLGLLQKLDVKR----FRVQALVLCPTRELADQVAKEIRR-LARFIPNIK 103 (460)
T ss_pred HHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHhhhcc----CCceEEEEeCCHHHHHHHHHHHHH-HHhhCCCcE
Confidence 446667777777888999999999999998888887643221 124678888999999999886543 32221 333
Q ss_pred eeEEeccCc------ccCCCceEEEEchHHHHHHHHH-----------HHHHHHHHHhhccccCC----ccCCCCceEEE
Q 038192 117 VGFQVRHDK------KIGDSCSIKFMTDGILLRELKA-----------LYEKQQQLLRSGQCIEP----KDRVFPLKLIL 175 (764)
Q Consensus 117 VGY~ir~e~------~~s~~t~I~f~T~GiLLr~l~~-----------i~de~~~~l~~~~~~~~----~~~~~~lKlIL 175 (764)
|..-.+..+ .....++|+++|||+|++.+.. |+||+|+++..++...+ ....++.++++
T Consensus 104 v~~~~Gg~~~~~~~~~l~~~~~IvV~Tp~rl~~~l~~~~~~l~~l~~lViDEad~~l~~g~~~~l~~i~~~~~~~~q~ll 183 (460)
T PRK11776 104 VLTLCGGVPMGPQIDSLEHGAHIIVGTPGRILDHLRKGTLDLDALNTLVLDEADRMLDMGFQDAIDAIIRQAPARRQTLL 183 (460)
T ss_pred EEEEECCCChHHHHHHhcCCCCEEEEChHHHHHHHHcCCccHHHCCEEEEECHHHHhCcCcHHHHHHHHHhCCcccEEEE
Confidence 332222211 1235689999999999998842 67999999887763322 12235678999
Q ss_pred eecccc--hhhhccccCCCCCCCeeeeCCcc--cceeEEecCCCchhhHHHHHHHHHHHHhhcCCCCCeEEecCCHHHHH
Q 038192 176 MSATLR--VEDFISGGRLFRNPPIIEVPTRQ--FPVTVHFSKRTEIVDYIGQAYKKVMSIHKRLPQGGILVFVTGQREVE 251 (764)
Q Consensus 176 MSATl~--~~~f~~~~~~f~~~~vi~i~gr~--~pV~~~y~~~~~~~d~l~~~~~~v~~i~~~~~~g~ilvF~~g~~~ie 251 (764)
||||+. ...+.. .++.++..+.+.... ..++.+|..... .+ ....+..+.....++.+|||++++..++
T Consensus 184 ~SAT~~~~~~~l~~--~~~~~~~~i~~~~~~~~~~i~~~~~~~~~-~~----k~~~l~~ll~~~~~~~~lVF~~t~~~~~ 256 (460)
T PRK11776 184 FSATYPEGIAAISQ--RFQRDPVEVKVESTHDLPAIEQRFYEVSP-DE----RLPALQRLLLHHQPESCVVFCNTKKECQ 256 (460)
T ss_pred EEecCcHHHHHHHH--HhcCCCEEEEECcCCCCCCeeEEEEEeCc-HH----HHHHHHHHHHhcCCCceEEEECCHHHHH
Confidence 999994 445553 455666666665432 224444432211 11 1122233333345677899999988888
Q ss_pred HHHHHHHHHHHHhhhhccccccCCccccCCCCCccccchhHHhHHHHHhhcCcccccccccCCCCCcccccCcccccccc
Q 038192 252 YLCSKLRKASKQLLVNSSKENKGNQVVADSEPNATKDINMKEINEAFEIQGYSTEQQTDRFSSYDEDQFDIDDNELDALS 331 (764)
Q Consensus 252 ~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~ 331 (764)
.+++.|.+
T Consensus 257 ~l~~~L~~------------------------------------------------------------------------ 264 (460)
T PRK11776 257 EVADALNA------------------------------------------------------------------------ 264 (460)
T ss_pred HHHHHHHh------------------------------------------------------------------------
Confidence 77666532
Q ss_pred CccchhhhhhccchhhhhhhcCCCCCCCCcccccccchhhhhHHHHHHhhcCCCCCCCccccCCCCCCCCcCCCCCCCCC
Q 038192 332 DSETESETEILGEDEKLVEQKCPMDGDDPVDVLKENWSLGSLKLAFEVLSGKNASGPSSQMKLSTPAIPEQCTELPPTPT 411 (764)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilvfl~g~~~i~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 411 (764)
T Consensus 265 -------------------------------------------------------------------------------- 264 (460)
T PRK11776 265 -------------------------------------------------------------------------------- 264 (460)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCCCccccccCcccCCCCCeEEEecCCCCCHHHHHhhhccCCCCceEEEEecCcccccCCCCCeEEEEeCCccc
Q 038192 412 PEQCPELSSPDVEKMGDNKRAGVGALCVLPLYAMLPAAAQLRVFEDVKEGERLVVVSTNVAETSLTIPGIKYVVDTGREK 491 (764)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~pLHs~l~~~eQ~~vf~~~~~g~rKVIlsTNIAEtSITIpdV~~VID~G~~K 491 (764)
.++.+.++||+|++.+|.++++.|.+|..+|+|||++||+||+||+|.+||++++
T Consensus 265 -----------------------~~~~v~~~hg~~~~~eR~~~l~~F~~g~~~vLVaTdv~~rGiDi~~v~~VI~~d~-- 319 (460)
T PRK11776 265 -----------------------QGFSALALHGDLEQRDRDQVLVRFANRSCSVLVATDVAARGLDIKALEAVINYEL-- 319 (460)
T ss_pred -----------------------CCCcEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEecccccccchhcCCeEEEecC--
Confidence 1245789999999999999999999999999999999999999999999998544
Q ss_pred ceeeccCCCccccceeeccHHhHHHhccccCCCCC-CEEEEccCHHHh
Q 038192 492 VKKYNSANGIESYEIQWISKASAAQRAGRAGRTAP-GHCYRLYSSAVF 538 (764)
Q Consensus 492 ~~~yd~~~~~~~l~~~~iSkasa~QR~GRAGR~~~-G~cyrLys~~~~ 538 (764)
+ -+..++.||+|||||.+. |.||.|++..+.
T Consensus 320 ------p----------~~~~~yiqR~GRtGR~g~~G~ai~l~~~~e~ 351 (460)
T PRK11776 320 ------A----------RDPEVHVHRIGRTGRAGSKGLALSLVAPEEM 351 (460)
T ss_pred ------C----------CCHhHhhhhcccccCCCCcceEEEEEchhHH
Confidence 3 234567799999999986 999999998654
No 18
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=99.97 E-value=7.3e-30 Score=293.20 Aligned_cols=306 Identities=25% Similarity=0.314 Sum_probs=221.3
Q ss_pred HHhhhcCCCchhhHHHHHHHHHcCCeEEEEecCCCCccccHHHHHHHhccCCCCCCCCCce-EEEecccHHHHHHHHHHH
Q 038192 27 VENNRKDLPIVMMEQEIMEAVNDNSAVIICGETGCGKTTQVPQFLFEAGFGSNRCSSRSGR-IGVTQPRRVAVLATAKRV 105 (764)
Q Consensus 27 ~~~~R~~LPi~~~~~~Il~~l~~~~vviI~GeTGSGKTTqvPq~Lle~~~~~~~~~~~~~~-Ii~tQPRRiaAisvA~RV 105 (764)
+.+.--.-|...+...|..++.+.+ +++.+.||||||..+-..+++....... .... .+|.-|+|.+|.|+++ +
T Consensus 44 l~~~gf~~pt~IQ~~~IP~~l~g~D-vi~~A~TGsGKT~Af~lP~l~~l~~~~~---~~~~~aLil~PTRELA~Qi~~-~ 118 (513)
T COG0513 44 LKDLGFEEPTPIQLAAIPLILAGRD-VLGQAQTGTGKTAAFLLPLLQKILKSVE---RKYVSALILAPTRELAVQIAE-E 118 (513)
T ss_pred HHHcCCCCCCHHHHHHHHHHhCCCC-EEEECCCCChHHHHHHHHHHHHHhcccc---cCCCceEEECCCHHHHHHHHH-H
Confidence 3333345688888888877777655 7899999999999988888887431111 1112 8899999999999988 5
Q ss_pred HHHhCCCC-CCEeeEEeccCcc------cCCCceEEEEchHHHHHHHHH-----------HHHHHHHHHhhccccCCc--
Q 038192 106 AFELGLHL-GKEVGFQVRHDKK------IGDSCSIKFMTDGILLRELKA-----------LYEKQQQLLRSGQCIEPK-- 165 (764)
Q Consensus 106 a~E~g~~l-G~~VGY~ir~e~~------~s~~t~I~f~T~GiLLr~l~~-----------i~de~~~~l~~~~~~~~~-- 165 (764)
+..++... +-.+..-+.+.+. .....+|+|+|||+|++++.. |+||+++|++.||...+.
T Consensus 119 ~~~~~~~~~~~~~~~i~GG~~~~~q~~~l~~~~~ivVaTPGRllD~i~~~~l~l~~v~~lVlDEADrmLd~Gf~~~i~~I 198 (513)
T COG0513 119 LRKLGKNLGGLRVAVVYGGVSIRKQIEALKRGVDIVVATPGRLLDLIKRGKLDLSGVETLVLDEADRMLDMGFIDDIEKI 198 (513)
T ss_pred HHHHHhhcCCccEEEEECCCCHHHHHHHHhcCCCEEEECccHHHHHHHcCCcchhhcCEEEeccHhhhhcCCCHHHHHHH
Confidence 55565544 3445554444432 233589999999999999953 679999999999854332
Q ss_pred --cCCCCceEEEeecccch--hhhccccCCCCCCCeeeeCCcc-----cceeEEecCCCchhhHHHHHHHHHHHHhhcCC
Q 038192 166 --DRVFPLKLILMSATLRV--EDFISGGRLFRNPPIIEVPTRQ-----FPVTVHFSKRTEIVDYIGQAYKKVMSIHKRLP 236 (764)
Q Consensus 166 --~~~~~lKlILMSATl~~--~~f~~~~~~f~~~~vi~i~gr~-----~pV~~~y~~~~~~~d~l~~~~~~v~~i~~~~~ 236 (764)
...++.+++++|||++. ..++. +|..++..|.+.-.. -.|+.+|..... .+ .....+..+.....
T Consensus 199 ~~~~p~~~qtllfSAT~~~~i~~l~~--~~l~~p~~i~v~~~~~~~~~~~i~q~~~~v~~-~~---~k~~~L~~ll~~~~ 272 (513)
T COG0513 199 LKALPPDRQTLLFSATMPDDIRELAR--RYLNDPVEIEVSVEKLERTLKKIKQFYLEVES-EE---EKLELLLKLLKDED 272 (513)
T ss_pred HHhCCcccEEEEEecCCCHHHHHHHH--HHccCCcEEEEccccccccccCceEEEEEeCC-HH---HHHHHHHHHHhcCC
Confidence 22347999999999954 34443 577777777776222 234445543221 11 12233344444445
Q ss_pred CCCeEEecCCHHHHHHHHHHHHHHHHHhhhhccccccCCccccCCCCCccccchhHHhHHHHHhhcCcccccccccCCCC
Q 038192 237 QGGILVFVTGQREVEYLCSKLRKASKQLLVNSSKENKGNQVVADSEPNATKDINMKEINEAFEIQGYSTEQQTDRFSSYD 316 (764)
Q Consensus 237 ~g~ilvF~~g~~~ie~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~ 316 (764)
.+.++||+.++..++.++..|..
T Consensus 273 ~~~~IVF~~tk~~~~~l~~~l~~--------------------------------------------------------- 295 (513)
T COG0513 273 EGRVIVFVRTKRLVEELAESLRK--------------------------------------------------------- 295 (513)
T ss_pred CCeEEEEeCcHHHHHHHHHHHHH---------------------------------------------------------
Confidence 56788888888877776555432
Q ss_pred CcccccCccccccccCccchhhhhhccchhhhhhhcCCCCCCCCcccccccchhhhhHHHHHHhhcCCCCCCCccccCCC
Q 038192 317 EDQFDIDDNELDALSDSETESETEILGEDEKLVEQKCPMDGDDPVDVLKENWSLGSLKLAFEVLSGKNASGPSSQMKLST 396 (764)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilvfl~g~~~i~~l~~~~~~l~~~~~~~~~~~~~~~~ 396 (764)
T Consensus 296 -------------------------------------------------------------------------------- 295 (513)
T COG0513 296 -------------------------------------------------------------------------------- 295 (513)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCcCCCCCCCCCCCCCCCCCCCccccccCcccCCCCCeEEEecCCCCCHHHHHhhhccCCCCceEEEEecCcccccC
Q 038192 397 PAIPEQCTELPPTPTPEQCPELSSPDVEKMGDNKRAGVGALCVLPLYAMLPAAAQLRVFEDVKEGERLVVVSTNVAETSL 476 (764)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~pLHs~l~~~eQ~~vf~~~~~g~rKVIlsTNIAEtSI 476 (764)
.++.+..|||+|++++|.++++.|.+|..+|+||||||.+||
T Consensus 296 --------------------------------------~g~~~~~lhG~l~q~~R~~~l~~F~~g~~~vLVaTDvaaRGi 337 (513)
T COG0513 296 --------------------------------------RGFKVAALHGDLPQEERDRALEKFKDGELRVLVATDVAARGL 337 (513)
T ss_pred --------------------------------------CCCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEEechhhccC
Confidence 236799999999999999999999999999999999999999
Q ss_pred CCCCeEEEEeCCcccceeeccCCCccccceeeccHHhHHHhccccCCCCC-CEEEEccCHH
Q 038192 477 TIPGIKYVVDTGREKVKKYNSANGIESYEIQWISKASAAQRAGRAGRTAP-GHCYRLYSSA 536 (764)
Q Consensus 477 TIpdV~~VID~G~~K~~~yd~~~~~~~l~~~~iSkasa~QR~GRAGR~~~-G~cyrLys~~ 536 (764)
+||+|.+||| ||.+...+.++ ||.||+||.+. |.++.+++..
T Consensus 338 Di~~v~~Vin--------yD~p~~~e~yv----------HRiGRTgRaG~~G~ai~fv~~~ 380 (513)
T COG0513 338 DIPDVSHVIN--------YDLPLDPEDYV----------HRIGRTGRAGRKGVAISFVTEE 380 (513)
T ss_pred CccccceeEE--------ccCCCCHHHhe----------eccCccccCCCCCeEEEEeCcH
Confidence 9999999998 88776655555 99999999987 9999999864
No 19
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.97 E-value=2.2e-29 Score=284.33 Aligned_cols=307 Identities=19% Similarity=0.239 Sum_probs=207.1
Q ss_pred HHhhhcCCCchhhHHHHHHHHHcCCeEEEEecCCCCccccHHHHHHHhccCCCC---CCCCCceEEEecccHHHHHHHHH
Q 038192 27 VENNRKDLPIVMMEQEIMEAVNDNSAVIICGETGCGKTTQVPQFLFEAGFGSNR---CSSRSGRIGVTQPRRVAVLATAK 103 (764)
Q Consensus 27 ~~~~R~~LPi~~~~~~Il~~l~~~~vviI~GeTGSGKTTqvPq~Lle~~~~~~~---~~~~~~~Ii~tQPRRiaAisvA~ 103 (764)
+.+..-.-|...+++ .+..+.+++.++++|+||||||..+-..+++....... .....+++++..|+|.+|.++++
T Consensus 23 l~~~g~~~pt~iQ~~-aip~il~g~dvi~~ApTGsGKTla~llp~l~~l~~~~~~~~~~~~~~~~lil~PtreLa~Qi~~ 101 (423)
T PRK04837 23 LEKKGFHNCTPIQAL-ALPLTLAGRDVAGQAQTGTGKTMAFLTATFHYLLSHPAPEDRKVNQPRALIMAPTRELAVQIHA 101 (423)
T ss_pred HHHCCCCCCCHHHHH-HHHHHhCCCcEEEECCCCchHHHHHHHHHHHHHHhcccccccccCCceEEEECCcHHHHHHHHH
Confidence 333333445555554 45556666678999999999999876666654322110 00123689999999999999987
Q ss_pred HHHHHhCCCCCCEeeEEeccCcc------cCCCceEEEEchHHHHHHHHH-----------HHHHHHHHHhhccccCC--
Q 038192 104 RVAFELGLHLGKEVGFQVRHDKK------IGDSCSIKFMTDGILLRELKA-----------LYEKQQQLLRSGQCIEP-- 164 (764)
Q Consensus 104 RVa~E~g~~lG~~VGY~ir~e~~------~s~~t~I~f~T~GiLLr~l~~-----------i~de~~~~l~~~~~~~~-- 164 (764)
. +..+....|-.|+.-+..++. ...+++|+|+|||+|++.+.. |+||+|.++..++...+
T Consensus 102 ~-~~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~~l~~~l~~~~~~l~~v~~lViDEad~l~~~~f~~~i~~ 180 (423)
T PRK04837 102 D-AEPLAQATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRMFDLGFIKDIRW 180 (423)
T ss_pred H-HHHHhccCCceEEEEECCCCHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcccccccEEEEecHHHHhhcccHHHHHH
Confidence 4 455666667777765554431 234678999999999998843 56999998877753322
Q ss_pred -ccCCC---CceEEEeecccchh--hhccccCCCCCCCeeeeCCccc---cee--EEecCCCchhhHHHHHHHHHHHHhh
Q 038192 165 -KDRVF---PLKLILMSATLRVE--DFISGGRLFRNPPIIEVPTRQF---PVT--VHFSKRTEIVDYIGQAYKKVMSIHK 233 (764)
Q Consensus 165 -~~~~~---~lKlILMSATl~~~--~f~~~~~~f~~~~vi~i~gr~~---pV~--~~y~~~~~~~d~l~~~~~~v~~i~~ 233 (764)
....+ ..+.++||||+... .+.. .+++++..+.+..... .+. .+|... .+ ....+..+..
T Consensus 181 i~~~~~~~~~~~~~l~SAT~~~~~~~~~~--~~~~~p~~i~v~~~~~~~~~i~~~~~~~~~---~~----k~~~l~~ll~ 251 (423)
T PRK04837 181 LFRRMPPANQRLNMLFSATLSYRVRELAF--EHMNNPEYVEVEPEQKTGHRIKEELFYPSN---EE----KMRLLQTLIE 251 (423)
T ss_pred HHHhCCCccceeEEEEeccCCHHHHHHHH--HHCCCCEEEEEcCCCcCCCceeEEEEeCCH---HH----HHHHHHHHHH
Confidence 11122 34578999999543 3332 4566665665543221 121 222211 11 1112222222
Q ss_pred cCCCCCeEEecCCHHHHHHHHHHHHHHHHHhhhhccccccCCccccCCCCCccccchhHHhHHHHHhhcCcccccccccC
Q 038192 234 RLPQGGILVFVTGQREVEYLCSKLRKASKQLLVNSSKENKGNQVVADSEPNATKDINMKEINEAFEIQGYSTEQQTDRFS 313 (764)
Q Consensus 234 ~~~~g~ilvF~~g~~~ie~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~ 313 (764)
....+.+|||+++...++.++..|..
T Consensus 252 ~~~~~~~lVF~~t~~~~~~l~~~L~~------------------------------------------------------ 277 (423)
T PRK04837 252 EEWPDRAIIFANTKHRCEEIWGHLAA------------------------------------------------------ 277 (423)
T ss_pred hcCCCeEEEEECCHHHHHHHHHHHHh------------------------------------------------------
Confidence 23456788888888777766555421
Q ss_pred CCCCcccccCccccccccCccchhhhhhccchhhhhhhcCCCCCCCCcccccccchhhhhHHHHHHhhcCCCCCCCcccc
Q 038192 314 SYDEDQFDIDDNELDALSDSETESETEILGEDEKLVEQKCPMDGDDPVDVLKENWSLGSLKLAFEVLSGKNASGPSSQMK 393 (764)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilvfl~g~~~i~~l~~~~~~l~~~~~~~~~~~~~ 393 (764)
T Consensus 278 -------------------------------------------------------------------------------- 277 (423)
T PRK04837 278 -------------------------------------------------------------------------------- 277 (423)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCcCCCCCCCCCCCCCCCCCCCccccccCcccCCCCCeEEEecCCCCCHHHHHhhhccCCCCceEEEEecCccc
Q 038192 394 LSTPAIPEQCTELPPTPTPEQCPELSSPDVEKMGDNKRAGVGALCVLPLYAMLPAAAQLRVFEDVKEGERLVVVSTNVAE 473 (764)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~pLHs~l~~~eQ~~vf~~~~~g~rKVIlsTNIAE 473 (764)
.++.+..+||+|++++|.++++.|..|..+|+||||+|+
T Consensus 278 -----------------------------------------~g~~v~~lhg~~~~~~R~~~l~~F~~g~~~vLVaTdv~~ 316 (423)
T PRK04837 278 -----------------------------------------DGHRVGLLTGDVAQKKRLRILEEFTRGDLDILVATDVAA 316 (423)
T ss_pred -----------------------------------------CCCcEEEecCCCChhHHHHHHHHHHcCCCcEEEEechhh
Confidence 124588899999999999999999999999999999999
Q ss_pred ccCCCCCeEEEEeCCcccceeeccCCCccccceeeccHHhHHHhccccCCCCC-CEEEEccCHHH
Q 038192 474 TSLTIPGIKYVVDTGREKVKKYNSANGIESYEIQWISKASAAQRAGRAGRTAP-GHCYRLYSSAV 537 (764)
Q Consensus 474 tSITIpdV~~VID~G~~K~~~yd~~~~~~~l~~~~iSkasa~QR~GRAGR~~~-G~cyrLys~~~ 537 (764)
+||+||+|.+||+ ||.+.. .++|.||+|||||.+. |.|+-++++..
T Consensus 317 rGiDip~v~~VI~--------~d~P~s----------~~~yiqR~GR~gR~G~~G~ai~~~~~~~ 363 (423)
T PRK04837 317 RGLHIPAVTHVFN--------YDLPDD----------CEDYVHRIGRTGRAGASGHSISLACEEY 363 (423)
T ss_pred cCCCccccCEEEE--------eCCCCc----------hhheEeccccccCCCCCeeEEEEeCHHH
Confidence 9999999999998 665543 4455699999999986 99999999864
No 20
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=99.97 E-value=3.3e-29 Score=293.14 Aligned_cols=298 Identities=18% Similarity=0.210 Sum_probs=209.5
Q ss_pred hhhHHHHHHHHHcCCeEEEEecCCCCccccHHHHHHHhccCCCCCCCCCceEEEecccHHHHHHHHHHHHHHhCCCCCCE
Q 038192 37 VMMEQEIMEAVNDNSAVIICGETGCGKTTQVPQFLFEAGFGSNRCSSRSGRIGVTQPRRVAVLATAKRVAFELGLHLGKE 116 (764)
Q Consensus 37 ~~~~~~Il~~l~~~~vviI~GeTGSGKTTqvPq~Lle~~~~~~~~~~~~~~Ii~tQPRRiaAisvA~RVa~E~g~~lG~~ 116 (764)
+..|.+.+..+.+++.+|++|+||||||..+...+++...... ...+++|+.|+|.+|.|+++.+....+...|..
T Consensus 30 tpiQ~~ai~~ll~g~dvl~~ApTGsGKT~af~lpll~~l~~~~----~~~~~LIL~PTreLa~Qv~~~l~~~~~~~~~i~ 105 (629)
T PRK11634 30 SPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLHNLDPEL----KAPQILVLAPTRELAVQVAEAMTDFSKHMRGVN 105 (629)
T ss_pred CHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHHHHhhhcc----CCCeEEEEeCcHHHHHHHHHHHHHHHhhcCCce
Confidence 3456666777777788999999999999998888887543221 125899999999999999998765544333444
Q ss_pred eeEEeccCc------ccCCCceEEEEchHHHHHHHHH-----------HHHHHHHHHhhccccCC---c-cCCCCceEEE
Q 038192 117 VGFQVRHDK------KIGDSCSIKFMTDGILLRELKA-----------LYEKQQQLLRSGQCIEP---K-DRVFPLKLIL 175 (764)
Q Consensus 117 VGY~ir~e~------~~s~~t~I~f~T~GiLLr~l~~-----------i~de~~~~l~~~~~~~~---~-~~~~~lKlIL 175 (764)
|.......+ .....++|+++|||.|++.+.. |+||+|.++..++...+ . ......++++
T Consensus 106 v~~~~gG~~~~~q~~~l~~~~~IVVgTPgrl~d~l~r~~l~l~~l~~lVlDEAd~ml~~gf~~di~~Il~~lp~~~q~ll 185 (629)
T PRK11634 106 VVALYGGQRYDVQLRALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTAL 185 (629)
T ss_pred EEEEECCcCHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcchhhceEEEeccHHHHhhcccHHHHHHHHHhCCCCCeEEE
Confidence 443333222 1235689999999999998842 67999999888764322 1 2234678999
Q ss_pred eecccch--hhhccccCCCCCCCeeeeCCccc---ceeEEecCCCchhhHHHHHHHHHHHHhhcCCCCCeEEecCCHHHH
Q 038192 176 MSATLRV--EDFISGGRLFRNPPIIEVPTRQF---PVTVHFSKRTEIVDYIGQAYKKVMSIHKRLPQGGILVFVTGQREV 250 (764)
Q Consensus 176 MSATl~~--~~f~~~~~~f~~~~vi~i~gr~~---pV~~~y~~~~~~~d~l~~~~~~v~~i~~~~~~g~ilvF~~g~~~i 250 (764)
||||+.. ..+.. +|+.++..+.+..... .+...|..... .+.. ..+..+........+|||++++..+
T Consensus 186 fSAT~p~~i~~i~~--~~l~~~~~i~i~~~~~~~~~i~q~~~~v~~-~~k~----~~L~~~L~~~~~~~~IVF~~tk~~a 258 (629)
T PRK11634 186 FSATMPEAIRRITR--RFMKEPQEVRIQSSVTTRPDISQSYWTVWG-MRKN----EALVRFLEAEDFDAAIIFVRTKNAT 258 (629)
T ss_pred EEccCChhHHHHHH--HHcCCCeEEEccCccccCCceEEEEEEech-hhHH----HHHHHHHHhcCCCCEEEEeccHHHH
Confidence 9999943 33443 5777777776655432 12222221110 1111 1122222223445678888887777
Q ss_pred HHHHHHHHHHHHHhhhhccccccCCccccCCCCCccccchhHHhHHHHHhhcCcccccccccCCCCCcccccCccccccc
Q 038192 251 EYLCSKLRKASKQLLVNSSKENKGNQVVADSEPNATKDINMKEINEAFEIQGYSTEQQTDRFSSYDEDQFDIDDNELDAL 330 (764)
Q Consensus 251 e~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~ 330 (764)
+.++..|..
T Consensus 259 ~~l~~~L~~----------------------------------------------------------------------- 267 (629)
T PRK11634 259 LEVAEALER----------------------------------------------------------------------- 267 (629)
T ss_pred HHHHHHHHh-----------------------------------------------------------------------
Confidence 766555532
Q ss_pred cCccchhhhhhccchhhhhhhcCCCCCCCCcccccccchhhhhHHHHHHhhcCCCCCCCccccCCCCCCCCcCCCCCCCC
Q 038192 331 SDSETESETEILGEDEKLVEQKCPMDGDDPVDVLKENWSLGSLKLAFEVLSGKNASGPSSQMKLSTPAIPEQCTELPPTP 410 (764)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilvfl~g~~~i~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 410 (764)
T Consensus 268 -------------------------------------------------------------------------------- 267 (629)
T PRK11634 268 -------------------------------------------------------------------------------- 267 (629)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCCCCccccccCcccCCCCCeEEEecCCCCCHHHHHhhhccCCCCceEEEEecCcccccCCCCCeEEEEeCCcc
Q 038192 411 TPEQCPELSSPDVEKMGDNKRAGVGALCVLPLYAMLPAAAQLRVFEDVKEGERLVVVSTNVAETSLTIPGIKYVVDTGRE 490 (764)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~pLHs~l~~~eQ~~vf~~~~~g~rKVIlsTNIAEtSITIpdV~~VID~G~~ 490 (764)
.++.+..+||.|++.+|.++++.+..|+.+|+|||++|++||+||+|.+||+
T Consensus 268 ------------------------~g~~~~~lhgd~~q~~R~~il~~Fr~G~~~ILVATdv~arGIDip~V~~VI~---- 319 (629)
T PRK11634 268 ------------------------NGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGLDVERISLVVN---- 319 (629)
T ss_pred ------------------------CCCCEEEeeCCCCHHHHHHHHHHHhCCCCCEEEEcchHhcCCCcccCCEEEE----
Confidence 1255788999999999999999999999999999999999999999999997
Q ss_pred cceeeccCCCccccceeeccHHhHHHhccccCCCCC-CEEEEccCHHHh
Q 038192 491 KVKKYNSANGIESYEIQWISKASAAQRAGRAGRTAP-GHCYRLYSSAVF 538 (764)
Q Consensus 491 K~~~yd~~~~~~~l~~~~iSkasa~QR~GRAGR~~~-G~cyrLys~~~~ 538 (764)
||.+. +-.+|.||+|||||.+. |.|+-+++..+.
T Consensus 320 ----~d~P~----------~~e~yvqRiGRtGRaGr~G~ai~~v~~~e~ 354 (629)
T PRK11634 320 ----YDIPM----------DSESYVHRIGRTGRAGRAGRALLFVENRER 354 (629)
T ss_pred ----eCCCC----------CHHHHHHHhccccCCCCcceEEEEechHHH
Confidence 66443 55677899999999987 999999987543
No 21
>PTZ00110 helicase; Provisional
Probab=99.96 E-value=1e-28 Score=286.04 Aligned_cols=303 Identities=18% Similarity=0.225 Sum_probs=195.5
Q ss_pred CCchhhHHHHHHHHHcCCeEEEEecCCCCccccHHHHHHHhccCCC-CCCCCCceEEEecccHHHHHHHHHHHHHHhCCC
Q 038192 34 LPIVMMEQEIMEAVNDNSAVIICGETGCGKTTQVPQFLFEAGFGSN-RCSSRSGRIGVTQPRRVAVLATAKRVAFELGLH 112 (764)
Q Consensus 34 LPi~~~~~~Il~~l~~~~vviI~GeTGSGKTTqvPq~Lle~~~~~~-~~~~~~~~Ii~tQPRRiaAisvA~RVa~E~g~~ 112 (764)
=|...+++.| ..+..++.+|++++||||||+.+-..++.+..... ........++|..|+|.+|.++.+.+ ..++..
T Consensus 152 ~pt~iQ~~ai-p~~l~G~dvI~~ApTGSGKTlaylLP~l~~i~~~~~~~~~~gp~~LIL~PTreLa~Qi~~~~-~~~~~~ 229 (545)
T PTZ00110 152 EPTPIQVQGW-PIALSGRDMIGIAETGSGKTLAFLLPAIVHINAQPLLRYGDGPIVLVLAPTRELAEQIREQC-NKFGAS 229 (545)
T ss_pred CCCHHHHHHH-HHHhcCCCEEEEeCCCChHHHHHHHHHHHHHHhcccccCCCCcEEEEECChHHHHHHHHHHH-HHHhcc
Confidence 3555555555 55555556788999999999874333333221110 00011257899999999999998854 455554
Q ss_pred CCCEeeEEeccCc------ccCCCceEEEEchHHHHHHHHH-----------HHHHHHHHHhhccccCC----ccCCCCc
Q 038192 113 LGKEVGFQVRHDK------KIGDSCSIKFMTDGILLRELKA-----------LYEKQQQLLRSGQCIEP----KDRVFPL 171 (764)
Q Consensus 113 lG~~VGY~ir~e~------~~s~~t~I~f~T~GiLLr~l~~-----------i~de~~~~l~~~~~~~~----~~~~~~l 171 (764)
.+-.+........ ......+|+++|||+|++.+.. |+||+|+++..++...+ ...+++.
T Consensus 230 ~~i~~~~~~gg~~~~~q~~~l~~~~~IlVaTPgrL~d~l~~~~~~l~~v~~lViDEAd~mld~gf~~~i~~il~~~~~~~ 309 (545)
T PTZ00110 230 SKIRNTVAYGGVPKRGQIYALRRGVEILIACPGRLIDFLESNVTNLRRVTYLVLDEADRMLDMGFEPQIRKIVSQIRPDR 309 (545)
T ss_pred cCccEEEEeCCCCHHHHHHHHHcCCCEEEECHHHHHHHHHcCCCChhhCcEEEeehHHhhhhcchHHHHHHHHHhCCCCC
Confidence 4433322222221 1234678999999999998842 67999999887763221 2235788
Q ss_pred eEEEeecccc--hhhhccccCCCCC-CCeeeeCCcc----ccee--EEecCCCchhhHHHHHHHHHHHHhhcCCCCCeEE
Q 038192 172 KLILMSATLR--VEDFISGGRLFRN-PPIIEVPTRQ----FPVT--VHFSKRTEIVDYIGQAYKKVMSIHKRLPQGGILV 242 (764)
Q Consensus 172 KlILMSATl~--~~~f~~~~~~f~~-~~vi~i~gr~----~pV~--~~y~~~~~~~d~l~~~~~~v~~i~~~~~~g~ilv 242 (764)
++++||||+. .+.++. .++.. +..+.+.... ..++ +++.+.......+. .++..... ..+.+||
T Consensus 310 q~l~~SAT~p~~v~~l~~--~l~~~~~v~i~vg~~~l~~~~~i~q~~~~~~~~~k~~~L~----~ll~~~~~-~~~k~LI 382 (545)
T PTZ00110 310 QTLMWSATWPKEVQSLAR--DLCKEEPVHVNVGSLDLTACHNIKQEVFVVEEHEKRGKLK----MLLQRIMR-DGDKILI 382 (545)
T ss_pred eEEEEEeCCCHHHHHHHH--HHhccCCEEEEECCCccccCCCeeEEEEEEechhHHHHHH----HHHHHhcc-cCCeEEE
Confidence 9999999994 344543 34543 3233332211 1121 11111111011111 11111110 3457888
Q ss_pred ecCCHHHHHHHHHHHHHHHHHhhhhccccccCCccccCCCCCccccchhHHhHHHHHhhcCcccccccccCCCCCccccc
Q 038192 243 FVTGQREVEYLCSKLRKASKQLLVNSSKENKGNQVVADSEPNATKDINMKEINEAFEIQGYSTEQQTDRFSSYDEDQFDI 322 (764)
Q Consensus 243 F~~g~~~ie~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~ 322 (764)
|+++++.++.++..|+.
T Consensus 383 F~~t~~~a~~l~~~L~~--------------------------------------------------------------- 399 (545)
T PTZ00110 383 FVETKKGADFLTKELRL--------------------------------------------------------------- 399 (545)
T ss_pred EecChHHHHHHHHHHHH---------------------------------------------------------------
Confidence 88887777766555431
Q ss_pred CccccccccCccchhhhhhccchhhhhhhcCCCCCCCCcccccccchhhhhHHHHHHhhcCCCCCCCccccCCCCCCCCc
Q 038192 323 DDNELDALSDSETESETEILGEDEKLVEQKCPMDGDDPVDVLKENWSLGSLKLAFEVLSGKNASGPSSQMKLSTPAIPEQ 402 (764)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilvfl~g~~~i~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 402 (764)
T Consensus 400 -------------------------------------------------------------------------------- 399 (545)
T PTZ00110 400 -------------------------------------------------------------------------------- 399 (545)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCCCCCCCCCCCCccccccCcccCCCCCeEEEecCCCCCHHHHHhhhccCCCCceEEEEecCcccccCCCCCeE
Q 038192 403 CTELPPTPTPEQCPELSSPDVEKMGDNKRAGVGALCVLPLYAMLPAAAQLRVFEDVKEGERLVVVSTNVAETSLTIPGIK 482 (764)
Q Consensus 403 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~pLHs~l~~~eQ~~vf~~~~~g~rKVIlsTNIAEtSITIpdV~ 482 (764)
..+.+..+||++++++|..+++.|+.|..+|+||||+|++||+||+|.
T Consensus 400 --------------------------------~g~~~~~ihg~~~~~eR~~il~~F~~G~~~ILVaTdv~~rGIDi~~v~ 447 (545)
T PTZ00110 400 --------------------------------DGWPALCIHGDKKQEERTWVLNEFKTGKSPIMIATDVASRGLDVKDVK 447 (545)
T ss_pred --------------------------------cCCcEEEEECCCcHHHHHHHHHHHhcCCCcEEEEcchhhcCCCcccCC
Confidence 124567899999999999999999999999999999999999999999
Q ss_pred EEEeCCcccceeeccCCCccccceeeccHHhHHHhccccCCCCC-CEEEEccCHHHh
Q 038192 483 YVVDTGREKVKKYNSANGIESYEIQWISKASAAQRAGRAGRTAP-GHCYRLYSSAVF 538 (764)
Q Consensus 483 ~VID~G~~K~~~yd~~~~~~~l~~~~iSkasa~QR~GRAGR~~~-G~cyrLys~~~~ 538 (764)
+||+ ||.+. |.+++.||+|||||.+. |.||.+|+....
T Consensus 448 ~VI~--------~d~P~----------s~~~yvqRiGRtGR~G~~G~ai~~~~~~~~ 486 (545)
T PTZ00110 448 YVIN--------FDFPN----------QIEDYVHRIGRTGRAGAKGASYTFLTPDKY 486 (545)
T ss_pred EEEE--------eCCCC----------CHHHHHHHhcccccCCCCceEEEEECcchH
Confidence 9998 55443 45667799999999976 999999998654
No 22
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=99.96 E-value=2.7e-28 Score=276.47 Aligned_cols=302 Identities=22% Similarity=0.274 Sum_probs=203.5
Q ss_pred hhHHHHHHHHHcCCeEEEEecCCCCccccHHHHHHHhccCCCCCCCCCceEEEecccHHHHHHHHHHHHHHhCCCCCCEe
Q 038192 38 MMEQEIMEAVNDNSAVIICGETGCGKTTQVPQFLFEAGFGSNRCSSRSGRIGVTQPRRVAVLATAKRVAFELGLHLGKEV 117 (764)
Q Consensus 38 ~~~~~Il~~l~~~~vviI~GeTGSGKTTqvPq~Lle~~~~~~~~~~~~~~Ii~tQPRRiaAisvA~RVa~E~g~~lG~~V 117 (764)
..|.+.+.++.+++.++++++||||||..+-..+++.............++++..|+|.+|.++++++ ..++...|..|
T Consensus 26 ~iQ~~ai~~~~~g~d~l~~apTGsGKT~~~~lp~l~~l~~~~~~~~~~~~~lil~Pt~eLa~Q~~~~~-~~l~~~~~~~v 104 (434)
T PRK11192 26 AIQAEAIPPALDGRDVLGSAPTGTGKTAAFLLPALQHLLDFPRRKSGPPRILILTPTRELAMQVADQA-RELAKHTHLDI 104 (434)
T ss_pred HHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhhccccCCCCceEEEECCcHHHHHHHHHHH-HHHHccCCcEE
Confidence 45566666666777799999999999987544444432111100112368999999999999998854 44555555555
Q ss_pred eEEeccCc------ccCCCceEEEEchHHHHHHHHH-----------HHHHHHHHHhhccccCCc----cCCCCceEEEe
Q 038192 118 GFQVRHDK------KIGDSCSIKFMTDGILLRELKA-----------LYEKQQQLLRSGQCIEPK----DRVFPLKLILM 176 (764)
Q Consensus 118 GY~ir~e~------~~s~~t~I~f~T~GiLLr~l~~-----------i~de~~~~l~~~~~~~~~----~~~~~lKlILM 176 (764)
+.-..... ....+.+|+++|+|+|++.+.. |+||+|+++..++...+. ......++++|
T Consensus 105 ~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~~~~~~~~~~~v~~lViDEah~~l~~~~~~~~~~i~~~~~~~~q~~~~ 184 (434)
T PRK11192 105 ATITGGVAYMNHAEVFSENQDIVVATPGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIETIAAETRWRKQTLLF 184 (434)
T ss_pred EEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHcCCcCcccCCEEEEECHHHHhCCCcHHHHHHHHHhCccccEEEEE
Confidence 54333221 2245678999999999998742 579999988777533221 12345689999
Q ss_pred ecccch---hhhccccCCCCCCCeeeeCCcc---cceeEEecCCCchhhHHHHHHHHHHHHhhcCCCCCeEEecCCHHHH
Q 038192 177 SATLRV---EDFISGGRLFRNPPIIEVPTRQ---FPVTVHFSKRTEIVDYIGQAYKKVMSIHKRLPQGGILVFVTGQREV 250 (764)
Q Consensus 177 SATl~~---~~f~~~~~~f~~~~vi~i~gr~---~pV~~~y~~~~~~~d~l~~~~~~v~~i~~~~~~g~ilvF~~g~~~i 250 (764)
|||+.. ..|.. .++.++..+.+.... ..+..+|... +........+..+......+.+|||+++.+.+
T Consensus 185 SAT~~~~~~~~~~~--~~~~~~~~i~~~~~~~~~~~i~~~~~~~----~~~~~k~~~l~~l~~~~~~~~~lVF~~s~~~~ 258 (434)
T PRK11192 185 SATLEGDAVQDFAE--RLLNDPVEVEAEPSRRERKKIHQWYYRA----DDLEHKTALLCHLLKQPEVTRSIVFVRTRERV 258 (434)
T ss_pred EeecCHHHHHHHHH--HHccCCEEEEecCCcccccCceEEEEEe----CCHHHHHHHHHHHHhcCCCCeEEEEeCChHHH
Confidence 999953 45553 344444444443211 1122222211 11111112222333333456788898888887
Q ss_pred HHHHHHHHHHHHHhhhhccccccCCccccCCCCCccccchhHHhHHHHHhhcCcccccccccCCCCCcccccCccccccc
Q 038192 251 EYLCSKLRKASKQLLVNSSKENKGNQVVADSEPNATKDINMKEINEAFEIQGYSTEQQTDRFSSYDEDQFDIDDNELDAL 330 (764)
Q Consensus 251 e~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~ 330 (764)
+.++..|..
T Consensus 259 ~~l~~~L~~----------------------------------------------------------------------- 267 (434)
T PRK11192 259 HELAGWLRK----------------------------------------------------------------------- 267 (434)
T ss_pred HHHHHHHHh-----------------------------------------------------------------------
Confidence 777665532
Q ss_pred cCccchhhhhhccchhhhhhhcCCCCCCCCcccccccchhhhhHHHHHHhhcCCCCCCCccccCCCCCCCCcCCCCCCCC
Q 038192 331 SDSETESETEILGEDEKLVEQKCPMDGDDPVDVLKENWSLGSLKLAFEVLSGKNASGPSSQMKLSTPAIPEQCTELPPTP 410 (764)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilvfl~g~~~i~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 410 (764)
T Consensus 268 -------------------------------------------------------------------------------- 267 (434)
T PRK11192 268 -------------------------------------------------------------------------------- 267 (434)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCCCCccccccCcccCCCCCeEEEecCCCCCHHHHHhhhccCCCCceEEEEecCcccccCCCCCeEEEEeCCcc
Q 038192 411 TPEQCPELSSPDVEKMGDNKRAGVGALCVLPLYAMLPAAAQLRVFEDVKEGERLVVVSTNVAETSLTIPGIKYVVDTGRE 490 (764)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~pLHs~l~~~eQ~~vf~~~~~g~rKVIlsTNIAEtSITIpdV~~VID~G~~ 490 (764)
.++.+..+||+|++.+|..+++.|..|..+|+|||+++++||+||+|.+||+
T Consensus 268 ------------------------~~~~~~~l~g~~~~~~R~~~l~~f~~G~~~vLVaTd~~~~GiDip~v~~VI~---- 319 (434)
T PRK11192 268 ------------------------AGINCCYLEGEMVQAKRNEAIKRLTDGRVNVLVATDVAARGIDIDDVSHVIN---- 319 (434)
T ss_pred ------------------------CCCCEEEecCCCCHHHHHHHHHHHhCCCCcEEEEccccccCccCCCCCEEEE----
Confidence 1245788999999999999999999999999999999999999999999998
Q ss_pred cceeeccCCCccccceeeccHHhHHHhccccCCCCC-CEEEEccCHHHhc
Q 038192 491 KVKKYNSANGIESYEIQWISKASAAQRAGRAGRTAP-GHCYRLYSSAVFN 539 (764)
Q Consensus 491 K~~~yd~~~~~~~l~~~~iSkasa~QR~GRAGR~~~-G~cyrLys~~~~~ 539 (764)
||. |.|...|.||+|||||.+. |.|+-+++..++.
T Consensus 320 ----~d~----------p~s~~~yiqr~GR~gR~g~~g~ai~l~~~~d~~ 355 (434)
T PRK11192 320 ----FDM----------PRSADTYLHRIGRTGRAGRKGTAISLVEAHDHL 355 (434)
T ss_pred ----ECC----------CCCHHHHhhcccccccCCCCceEEEEecHHHHH
Confidence 553 3456778899999999875 9999999887664
No 23
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.96 E-value=4.6e-28 Score=281.76 Aligned_cols=304 Identities=18% Similarity=0.224 Sum_probs=207.0
Q ss_pred cCCCchhhHHHHHHHHHcCCeEEEEecCCCCccccHHHHHHHhccCCC---CCCCCCceEEEecccHHHHHHHHHHHHHH
Q 038192 32 KDLPIVMMEQEIMEAVNDNSAVIICGETGCGKTTQVPQFLFEAGFGSN---RCSSRSGRIGVTQPRRVAVLATAKRVAFE 108 (764)
Q Consensus 32 ~~LPi~~~~~~Il~~l~~~~vviI~GeTGSGKTTqvPq~Lle~~~~~~---~~~~~~~~Ii~tQPRRiaAisvA~RVa~E 108 (764)
-.-|...++ +.+..+.+++.+|++++||||||..+-.++++...... ......+++++..|+|.+|.+++++ ...
T Consensus 29 ~~~ptpiQ~-~~ip~~l~G~Dvi~~ApTGSGKTlafllpil~~l~~~~~~~~~~~~~~raLIl~PTreLa~Qi~~~-~~~ 106 (572)
T PRK04537 29 FTRCTPIQA-LTLPVALPGGDVAGQAQTGTGKTLAFLVAVMNRLLSRPALADRKPEDPRALILAPTRELAIQIHKD-AVK 106 (572)
T ss_pred CCCCCHHHH-HHHHHHhCCCCEEEEcCCCCcHHHHHHHHHHHHHHhcccccccccCCceEEEEeCcHHHHHHHHHH-HHH
Confidence 344555444 44556666666899999999999987776666432211 0001136899999999999999886 456
Q ss_pred hCCCCCCEeeEEeccCcc------cCCCceEEEEchHHHHHHHHH------------HHHHHHHHHhhccccCC---ccC
Q 038192 109 LGLHLGKEVGFQVRHDKK------IGDSCSIKFMTDGILLRELKA------------LYEKQQQLLRSGQCIEP---KDR 167 (764)
Q Consensus 109 ~g~~lG~~VGY~ir~e~~------~s~~t~I~f~T~GiLLr~l~~------------i~de~~~~l~~~~~~~~---~~~ 167 (764)
++..+|-.|+......+. ...+.+|+|+|+|.|++.+.. |+||+|.++..++...+ ...
T Consensus 107 l~~~~~i~v~~l~Gg~~~~~q~~~l~~~~dIiV~TP~rL~~~l~~~~~~~l~~v~~lViDEAh~lld~gf~~~i~~il~~ 186 (572)
T PRK04537 107 FGADLGLRFALVYGGVDYDKQRELLQQGVDVIIATPGRLIDYVKQHKVVSLHACEICVLDEADRMFDLGFIKDIRFLLRR 186 (572)
T ss_pred HhccCCceEEEEECCCCHHHHHHHHhCCCCEEEECHHHHHHHHHhccccchhheeeeEecCHHHHhhcchHHHHHHHHHh
Confidence 666677666655544331 234578999999999998732 67999998877764322 111
Q ss_pred ---CCCceEEEeecccchh--hhccccCCCCCCCeeeeCCcccc---eeEEecCCCchhhHHHHHHHHHHHHhhcCCCCC
Q 038192 168 ---VFPLKLILMSATLRVE--DFISGGRLFRNPPIIEVPTRQFP---VTVHFSKRTEIVDYIGQAYKKVMSIHKRLPQGG 239 (764)
Q Consensus 168 ---~~~lKlILMSATl~~~--~f~~~~~~f~~~~vi~i~gr~~p---V~~~y~~~~~~~d~l~~~~~~v~~i~~~~~~g~ 239 (764)
..+.++++||||+... .+.. .++.++..+.+...... +..++..... . .....+..+........
T Consensus 187 lp~~~~~q~ll~SATl~~~v~~l~~--~~l~~p~~i~v~~~~~~~~~i~q~~~~~~~-~----~k~~~L~~ll~~~~~~k 259 (572)
T PRK04537 187 MPERGTRQTLLFSATLSHRVLELAY--EHMNEPEKLVVETETITAARVRQRIYFPAD-E----EKQTLLLGLLSRSEGAR 259 (572)
T ss_pred cccccCceEEEEeCCccHHHHHHHH--HHhcCCcEEEeccccccccceeEEEEecCH-H----HHHHHHHHHHhcccCCc
Confidence 2267899999999543 3332 45555545544433221 1221211100 1 11122333333344567
Q ss_pred eEEecCCHHHHHHHHHHHHHHHHHhhhhccccccCCccccCCCCCccccchhHHhHHHHHhhcCcccccccccCCCCCcc
Q 038192 240 ILVFVTGQREVEYLCSKLRKASKQLLVNSSKENKGNQVVADSEPNATKDINMKEINEAFEIQGYSTEQQTDRFSSYDEDQ 319 (764)
Q Consensus 240 ilvF~~g~~~ie~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~ 319 (764)
+|||+++...++.+++.|.+
T Consensus 260 ~LVF~nt~~~ae~l~~~L~~------------------------------------------------------------ 279 (572)
T PRK04537 260 TMVFVNTKAFVERVARTLER------------------------------------------------------------ 279 (572)
T ss_pred EEEEeCCHHHHHHHHHHHHH------------------------------------------------------------
Confidence 88888888777766555432
Q ss_pred cccCccccccccCccchhhhhhccchhhhhhhcCCCCCCCCcccccccchhhhhHHHHHHhhcCCCCCCCccccCCCCCC
Q 038192 320 FDIDDNELDALSDSETESETEILGEDEKLVEQKCPMDGDDPVDVLKENWSLGSLKLAFEVLSGKNASGPSSQMKLSTPAI 399 (764)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilvfl~g~~~i~~l~~~~~~l~~~~~~~~~~~~~~~~~~~ 399 (764)
T Consensus 280 -------------------------------------------------------------------------------- 279 (572)
T PRK04537 280 -------------------------------------------------------------------------------- 279 (572)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCcCCCCCCCCCCCCCCCCCCCccccccCcccCCCCCeEEEecCCCCCHHHHHhhhccCCCCceEEEEecCcccccCCCC
Q 038192 400 PEQCTELPPTPTPEQCPELSSPDVEKMGDNKRAGVGALCVLPLYAMLPAAAQLRVFEDVKEGERLVVVSTNVAETSLTIP 479 (764)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~pLHs~l~~~eQ~~vf~~~~~g~rKVIlsTNIAEtSITIp 479 (764)
..+.+..+||+|++.+|.++++.|.+|..+||||||++|+||+||
T Consensus 280 -----------------------------------~g~~v~~lhg~l~~~eR~~il~~Fr~G~~~VLVaTdv~arGIDip 324 (572)
T PRK04537 280 -----------------------------------HGYRVGVLSGDVPQKKRESLLNRFQKGQLEILVATDVAARGLHID 324 (572)
T ss_pred -----------------------------------cCCCEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEehhhhcCCCcc
Confidence 124588999999999999999999999999999999999999999
Q ss_pred CeEEEEeCCcccceeeccCCCccccceeeccHHhHHHhccccCCCCC-CEEEEccCHHH
Q 038192 480 GIKYVVDTGREKVKKYNSANGIESYEIQWISKASAAQRAGRAGRTAP-GHCYRLYSSAV 537 (764)
Q Consensus 480 dV~~VID~G~~K~~~yd~~~~~~~l~~~~iSkasa~QR~GRAGR~~~-G~cyrLys~~~ 537 (764)
+|++||+ ||. |.|..+|.||+|||||.+. |.|+.|++...
T Consensus 325 ~V~~VIn--------yd~----------P~s~~~yvqRiGRaGR~G~~G~ai~~~~~~~ 365 (572)
T PRK04537 325 GVKYVYN--------YDL----------PFDAEDYVHRIGRTARLGEEGDAISFACERY 365 (572)
T ss_pred CCCEEEE--------cCC----------CCCHHHHhhhhcccccCCCCceEEEEecHHH
Confidence 9999997 553 3456778899999999986 99999998754
No 24
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=99.96 E-value=5.6e-28 Score=278.87 Aligned_cols=302 Identities=19% Similarity=0.240 Sum_probs=199.0
Q ss_pred CCchhhHHHHHHHHHcCCeEEEEecCCCCccccHHHHHHHhccCC---CCCCCCCceEEEecccHHHHHHHHHHHHHHhC
Q 038192 34 LPIVMMEQEIMEAVNDNSAVIICGETGCGKTTQVPQFLFEAGFGS---NRCSSRSGRIGVTQPRRVAVLATAKRVAFELG 110 (764)
Q Consensus 34 LPi~~~~~~Il~~l~~~~vviI~GeTGSGKTTqvPq~Lle~~~~~---~~~~~~~~~Ii~tQPRRiaAisvA~RVa~E~g 110 (764)
-|... |.+.+.++..++.++++++||||||..+-.+++...... ........++++..|+|.+|.++.+.+ ..++
T Consensus 143 ~ptpi-Q~~aip~il~g~dviv~ApTGSGKTlayllPil~~l~~~~~~~~~~~~~~~aLIL~PTreLa~Qi~~~~-~~l~ 220 (518)
T PLN00206 143 FPTPI-QMQAIPAALSGRSLLVSADTGSGKTASFLVPIISRCCTIRSGHPSEQRNPLAMVLTPTRELCVQVEDQA-KVLG 220 (518)
T ss_pred CCCHH-HHHHHHHHhcCCCEEEEecCCCCccHHHHHHHHHHHHhhccccccccCCceEEEEeCCHHHHHHHHHHH-HHHh
Confidence 35444 445555666777799999999999987666665543210 000112368999999999999987744 4555
Q ss_pred CCCCCEeeEEeccCc------ccCCCceEEEEchHHHHHHHHH-----------HHHHHHHHHhhcccc---CCccCCCC
Q 038192 111 LHLGKEVGFQVRHDK------KIGDSCSIKFMTDGILLRELKA-----------LYEKQQQLLRSGQCI---EPKDRVFP 170 (764)
Q Consensus 111 ~~lG~~VGY~ir~e~------~~s~~t~I~f~T~GiLLr~l~~-----------i~de~~~~l~~~~~~---~~~~~~~~ 170 (764)
..++..+..-+..+. ....+..|+++|||+|++.+.. |+||+|.++..|+.. .+....++
T Consensus 221 ~~~~~~~~~~~gG~~~~~q~~~l~~~~~IiV~TPgrL~~~l~~~~~~l~~v~~lViDEad~ml~~gf~~~i~~i~~~l~~ 300 (518)
T PLN00206 221 KGLPFKTALVVGGDAMPQQLYRIQQGVELIVGTPGRLIDLLSKHDIELDNVSVLVLDEVDCMLERGFRDQVMQIFQALSQ 300 (518)
T ss_pred CCCCceEEEEECCcchHHHHHHhcCCCCEEEECHHHHHHHHHcCCccchheeEEEeecHHHHhhcchHHHHHHHHHhCCC
Confidence 555544333333332 2234678999999999998843 679999998877632 22233467
Q ss_pred ceEEEeecccc--hhhhccccCCCCCCCeeeeCCcccc---eeEE--ecCCCchhhHHHHHHHHHHHHhhcC--CCCCeE
Q 038192 171 LKLILMSATLR--VEDFISGGRLFRNPPIIEVPTRQFP---VTVH--FSKRTEIVDYIGQAYKKVMSIHKRL--PQGGIL 241 (764)
Q Consensus 171 lKlILMSATl~--~~~f~~~~~~f~~~~vi~i~gr~~p---V~~~--y~~~~~~~d~l~~~~~~v~~i~~~~--~~g~il 241 (764)
.++++||||+. .+.+.. .+..+...+.+....-+ ++.+ +.+.. +. ..++.++.... ..+.+|
T Consensus 301 ~q~l~~SATl~~~v~~l~~--~~~~~~~~i~~~~~~~~~~~v~q~~~~~~~~---~k----~~~l~~~l~~~~~~~~~~i 371 (518)
T PLN00206 301 PQVLLFSATVSPEVEKFAS--SLAKDIILISIGNPNRPNKAVKQLAIWVETK---QK----KQKLFDILKSKQHFKPPAV 371 (518)
T ss_pred CcEEEEEeeCCHHHHHHHH--HhCCCCEEEEeCCCCCCCcceeEEEEeccch---hH----HHHHHHHHHhhcccCCCEE
Confidence 79999999994 455653 34444444554332211 1211 11110 10 11112221111 123467
Q ss_pred EecCCHHHHHHHHHHHHHHHHHhhhhccccccCCccccCCCCCccccchhHHhHHHHHhhcCcccccccccCCCCCcccc
Q 038192 242 VFVTGQREVEYLCSKLRKASKQLLVNSSKENKGNQVVADSEPNATKDINMKEINEAFEIQGYSTEQQTDRFSSYDEDQFD 321 (764)
Q Consensus 242 vF~~g~~~ie~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~ 321 (764)
||++++..++.++..|..
T Consensus 372 VFv~s~~~a~~l~~~L~~-------------------------------------------------------------- 389 (518)
T PLN00206 372 VFVSSRLGADLLANAITV-------------------------------------------------------------- 389 (518)
T ss_pred EEcCCchhHHHHHHHHhh--------------------------------------------------------------
Confidence 777766655544433321
Q ss_pred cCccccccccCccchhhhhhccchhhhhhhcCCCCCCCCcccccccchhhhhHHHHHHhhcCCCCCCCccccCCCCCCCC
Q 038192 322 IDDNELDALSDSETESETEILGEDEKLVEQKCPMDGDDPVDVLKENWSLGSLKLAFEVLSGKNASGPSSQMKLSTPAIPE 401 (764)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilvfl~g~~~i~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 401 (764)
T Consensus 390 -------------------------------------------------------------------------------- 389 (518)
T PLN00206 390 -------------------------------------------------------------------------------- 389 (518)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCCCCCCCCCCCCCCCCCccccccCcccCCCCCeEEEecCCCCCHHHHHhhhccCCCCceEEEEecCcccccCCCCCe
Q 038192 402 QCTELPPTPTPEQCPELSSPDVEKMGDNKRAGVGALCVLPLYAMLPAAAQLRVFEDVKEGERLVVVSTNVAETSLTIPGI 481 (764)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~pLHs~l~~~eQ~~vf~~~~~g~rKVIlsTNIAEtSITIpdV 481 (764)
..++.+..+||++++++|..+++.|..|..+|+|||+++++||+||+|
T Consensus 390 --------------------------------~~g~~~~~~Hg~~~~~eR~~il~~Fr~G~~~ILVaTdvl~rGiDip~v 437 (518)
T PLN00206 390 --------------------------------VTGLKALSIHGEKSMKERREVMKSFLVGEVPVIVATGVLGRGVDLLRV 437 (518)
T ss_pred --------------------------------ccCcceEEeeCCCCHHHHHHHHHHHHCCCCCEEEEecHhhccCCcccC
Confidence 013567889999999999999999999999999999999999999999
Q ss_pred EEEEeCCcccceeeccCCCccccceeeccHHhHHHhccccCCCCC-CEEEEccCHHHh
Q 038192 482 KYVVDTGREKVKKYNSANGIESYEIQWISKASAAQRAGRAGRTAP-GHCYRLYSSAVF 538 (764)
Q Consensus 482 ~~VID~G~~K~~~yd~~~~~~~l~~~~iSkasa~QR~GRAGR~~~-G~cyrLys~~~~ 538 (764)
++||+ ||.+ .|..+|.||+|||||.+. |.|+-+++.+..
T Consensus 438 ~~VI~--------~d~P----------~s~~~yihRiGRaGR~g~~G~ai~f~~~~~~ 477 (518)
T PLN00206 438 RQVII--------FDMP----------NTIKEYIHQIGRASRMGEKGTAIVFVNEEDR 477 (518)
T ss_pred CEEEE--------eCCC----------CCHHHHHHhccccccCCCCeEEEEEEchhHH
Confidence 99997 5543 466788899999999985 999999998764
No 25
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=99.96 E-value=1.9e-28 Score=264.62 Aligned_cols=320 Identities=20% Similarity=0.266 Sum_probs=231.2
Q ss_pred CCCeeeccCChhHHHhhhcCCCchhhHHHHHHHHHcCCeEEEEecCCCCccccHHHHHHHhccCCCC-----CCCCCceE
Q 038192 14 AAPIVVHVSRPNEVENNRKDLPIVMMEQEIMEAVNDNSAVIICGETGCGKTTQVPQFLFEAGFGSNR-----CSSRSGRI 88 (764)
Q Consensus 14 ~~~~~~~~~~~~~~~~~R~~LPi~~~~~~Il~~l~~~~vviI~GeTGSGKTTqvPq~Lle~~~~~~~-----~~~~~~~I 88 (764)
|.-...|..-..-+++-+-.+|...+|..|.-.+++.+ +|..++||||||..+|..|+...-.... ..-.....
T Consensus 247 wEE~~~P~e~l~~I~~~~y~eptpIqR~aipl~lQ~rD-~igvaETgsGktaaf~ipLl~~IsslP~~~~~en~~~gpya 325 (673)
T KOG0333|consen 247 WEESGFPLELLSVIKKPGYKEPTPIQRQAIPLGLQNRD-PIGVAETGSGKTAAFLIPLLIWISSLPPMARLENNIEGPYA 325 (673)
T ss_pred hhhcCCCHHHHHHHHhcCCCCCchHHHhhccchhccCC-eeeEEeccCCccccchhhHHHHHHcCCCcchhhhcccCcee
Confidence 33344454555667788889999999999986555555 6778999999999888887764221110 00123467
Q ss_pred EEecccHHHHHHHHHHHHHHhCCCCCC----EeeEEeccCc--ccCCCceEEEEchHHHHHHHHH-----------HHHH
Q 038192 89 GVTQPRRVAVLATAKRVAFELGLHLGK----EVGFQVRHDK--KIGDSCSIKFMTDGILLRELKA-----------LYEK 151 (764)
Q Consensus 89 i~tQPRRiaAisvA~RVa~E~g~~lG~----~VGY~ir~e~--~~s~~t~I~f~T~GiLLr~l~~-----------i~de 151 (764)
++..|+|..|.++-+ =+..+++.+|. .||..-+-|. +.+..+.|+++|||.|++.|.. ++||
T Consensus 326 iilaptReLaqqIee-Et~kf~~~lg~r~vsvigg~s~EEq~fqls~gceiviatPgrLid~Lenr~lvl~qctyvvlde 404 (673)
T KOG0333|consen 326 IILAPTRELAQQIEE-ETNKFGKPLGIRTVSVIGGLSFEEQGFQLSMGCEIVIATPGRLIDSLENRYLVLNQCTYVVLDE 404 (673)
T ss_pred eeechHHHHHHHHHH-HHHHhcccccceEEEEecccchhhhhhhhhccceeeecCchHHHHHHHHHHHHhccCceEeccc
Confidence 889999999888755 33445566664 3444333333 5688999999999999998843 5689
Q ss_pred HHHHHhhccccCCc-----------c------------------CCCCceEEEeeccc--chhhhccccCCCCCCCeeee
Q 038192 152 QQQLLRSGQCIEPK-----------D------------------RVFPLKLILMSATL--RVEDFISGGRLFRNPPIIEV 200 (764)
Q Consensus 152 ~~~~l~~~~~~~~~-----------~------------------~~~~lKlILMSATl--~~~~f~~~~~~f~~~~vi~i 200 (764)
+++|+++||--... + ...-.+.+.+|||| -++.++. .||..+.+++|
T Consensus 405 adrmiDmgfE~dv~~iL~~mPssn~k~~tde~~~~~~~~~~~~~~k~yrqT~mftatm~p~verlar--~ylr~pv~vti 482 (673)
T KOG0333|consen 405 ADRMIDMGFEPDVQKILEQMPSSNAKPDTDEKEGEERVRKNFSSSKKYRQTVMFTATMPPAVERLAR--SYLRRPVVVTI 482 (673)
T ss_pred hhhhhcccccHHHHHHHHhCCccccCCCccchhhHHHHHhhcccccceeEEEEEecCCChHHHHHHH--HHhhCCeEEEe
Confidence 99999988632110 0 01125678999999 4567765 79999888877
Q ss_pred C--Ccccc-ee--EEecCCCchhhHHHHHHHHHHHHhhcCCCCCeEEecCCHHHHHHHHHHHHHHHHHhhhhccccccCC
Q 038192 201 P--TRQFP-VT--VHFSKRTEIVDYIGQAYKKVMSIHKRLPQGGILVFVTGQREVEYLCSKLRKASKQLLVNSSKENKGN 275 (764)
Q Consensus 201 ~--gr~~p-V~--~~y~~~~~~~d~l~~~~~~v~~i~~~~~~g~ilvF~~g~~~ie~l~~~L~~~~~~~~~~~~~~~~~~ 275 (764)
. |+..| |+ +++... .+.++++..|....-.--++||++.++.++.+++.|.+
T Consensus 483 g~~gk~~~rveQ~v~m~~e-------d~k~kkL~eil~~~~~ppiIIFvN~kk~~d~lAk~LeK---------------- 539 (673)
T KOG0333|consen 483 GSAGKPTPRVEQKVEMVSE-------DEKRKKLIEILESNFDPPIIIFVNTKKGADALAKILEK---------------- 539 (673)
T ss_pred ccCCCCccchheEEEEecc-------hHHHHHHHHHHHhCCCCCEEEEEechhhHHHHHHHHhh----------------
Confidence 5 44443 22 333321 12255566665554445689999999999888777753
Q ss_pred ccccCCCCCccccchhHHhHHHHHhhcCcccccccccCCCCCcccccCccccccccCccchhhhhhccchhhhhhhcCCC
Q 038192 276 QVVADSEPNATKDINMKEINEAFEIQGYSTEQQTDRFSSYDEDQFDIDDNELDALSDSETESETEILGEDEKLVEQKCPM 355 (764)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (764)
T Consensus 540 -------------------------------------------------------------------------------- 539 (673)
T KOG0333|consen 540 -------------------------------------------------------------------------------- 539 (673)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCcccccccchhhhhHHHHHHhhcCCCCCCCccccCCCCCCCCcCCCCCCCCCCCCCCCCCCCccccccCcccCCCC
Q 038192 356 DGDDPVDVLKENWSLGSLKLAFEVLSGKNASGPSSQMKLSTPAIPEQCTELPPTPTPEQCPELSSPDVEKMGDNKRAGVG 435 (764)
Q Consensus 356 ~~~~ilvfl~g~~~i~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 435 (764)
.
T Consensus 540 -------------------------------------------------------------------------------~ 540 (673)
T KOG0333|consen 540 -------------------------------------------------------------------------------A 540 (673)
T ss_pred -------------------------------------------------------------------------------c
Confidence 1
Q ss_pred CeEEEecCCCCCHHHHHhhhccCCCCceEEEEecCcccccCCCCCeEEEEeCCcccceeeccCCCccccceeeccHHhHH
Q 038192 436 ALCVLPLYAMLPAAAQLRVFEDVKEGERLVVVSTNVAETSLTIPGIKYVVDTGREKVKKYNSANGIESYEIQWISKASAA 515 (764)
Q Consensus 436 ~~~i~pLHs~l~~~eQ~~vf~~~~~g~rKVIlsTNIAEtSITIpdV~~VID~G~~K~~~yd~~~~~~~l~~~~iSkasa~ 515 (764)
++.+..|||+-++++|..+++.++.|.-.|+||||+|.+||+||||.+||| ||-... -..|.
T Consensus 541 g~~~~tlHg~k~qeQRe~aL~~fr~~t~dIlVaTDvAgRGIDIpnVSlVin--------ydmaks----------ieDYt 602 (673)
T KOG0333|consen 541 GYKVTTLHGGKSQEQRENALADFREGTGDILVATDVAGRGIDIPNVSLVIN--------YDMAKS----------IEDYT 602 (673)
T ss_pred cceEEEeeCCccHHHHHHHHHHHHhcCCCEEEEecccccCCCCCccceeee--------cchhhh----------HHHHH
Confidence 367899999999999999999999999999999999999999999999998 553333 34566
Q ss_pred HhccccCCCCC-CEEEEccCHHH
Q 038192 516 QRAGRAGRTAP-GHCYRLYSSAV 537 (764)
Q Consensus 516 QR~GRAGR~~~-G~cyrLys~~~ 537 (764)
||.||+||.+. |++..+||.+.
T Consensus 603 HRIGRTgRAGk~GtaiSflt~~d 625 (673)
T KOG0333|consen 603 HRIGRTGRAGKSGTAISFLTPAD 625 (673)
T ss_pred HHhccccccccCceeEEEeccch
Confidence 99999999998 99999999976
No 26
>KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.96 E-value=8.4e-29 Score=264.78 Aligned_cols=317 Identities=21% Similarity=0.262 Sum_probs=213.1
Q ss_pred HHHHHHHHHcCCeEEEEecCCCCccccHHHHHHHhccCCC-CCCCCCceEEEecccHHHHHHHHHHHHHHhCCCCC----
Q 038192 40 EQEIMEAVNDNSAVIICGETGCGKTTQVPQFLFEAGFGSN-RCSSRSGRIGVTQPRRVAVLATAKRVAFELGLHLG---- 114 (764)
Q Consensus 40 ~~~Il~~l~~~~vviI~GeTGSGKTTqvPq~Lle~~~~~~-~~~~~~~~Ii~tQPRRiaAisvA~RVa~E~g~~lG---- 114 (764)
+..-+..+.+|..|++.+.||||||.++..+++|-.+... .........+|.-|+|.+|.|+-+ |++.+-+.+-
T Consensus 33 Qa~tIPlll~~KDVvveavTGSGKTlAFllP~le~i~rr~~~~~~~~vgalIIsPTRELa~QI~~-V~~~F~~~l~~l~~ 111 (567)
T KOG0345|consen 33 QAATIPLLLKNKDVVVEAVTGSGKTLAFLLPMLEIIYRREAKTPPGQVGALIISPTRELARQIRE-VAQPFLEHLPNLNC 111 (567)
T ss_pred HHhhhHHHhcCCceEEEcCCCCCchhhHHHHHHHHHHhhccCCCccceeEEEecCcHHHHHHHHH-HHHHHHHhhhccce
Confidence 6677788888888999999999999999888888653221 111112356788999999999877 6666655421
Q ss_pred -CEeeEEeccCcc---cCCCceEEEEchHHHHHHHHH-------------HHHHHHHHHhhccccCC---ccCC-CCceE
Q 038192 115 -KEVGFQVRHDKK---IGDSCSIKFMTDGILLRELKA-------------LYEKQQQLLRSGQCIEP---KDRV-FPLKL 173 (764)
Q Consensus 115 -~~VGY~ir~e~~---~s~~t~I~f~T~GiLLr~l~~-------------i~de~~~~l~~~~~~~~---~~~~-~~lKl 173 (764)
-.||.+---++. ..++++|++||||+|+++++. |+||+++++++||...+ .... ...+.
T Consensus 112 ~l~vGG~~v~~Di~~fkee~~nIlVgTPGRL~di~~~~~~~l~~rsLe~LVLDEADrLldmgFe~~~n~ILs~LPKQRRT 191 (567)
T KOG0345|consen 112 ELLVGGRSVEEDIKTFKEEGPNILVGTPGRLLDILQREAEKLSFRSLEILVLDEADRLLDMGFEASVNTILSFLPKQRRT 191 (567)
T ss_pred EEEecCccHHHHHHHHHHhCCcEEEeCchhHHHHHhchhhhccccccceEEecchHhHhcccHHHHHHHHHHhccccccc
Confidence 123432111111 135778999999999999964 67999999999985432 1222 34567
Q ss_pred EEeeccc--chhhhccccCCCCCCCeeeeCCcc---cc--eeEEecCCCchhhHHHHHHHHHHHHhhcCCCCCeEEecCC
Q 038192 174 ILMSATL--RVEDFISGGRLFRNPPIIEVPTRQ---FP--VTVHFSKRTEIVDYIGQAYKKVMSIHKRLPQGGILVFVTG 246 (764)
Q Consensus 174 ILMSATl--~~~~f~~~~~~f~~~~vi~i~gr~---~p--V~~~y~~~~~~~d~l~~~~~~v~~i~~~~~~g~ilvF~~g 246 (764)
=|+|||. .++++.. ....|+..|.|.... -| +..+|..... .+.+..++++........++||.++
T Consensus 192 GLFSATq~~~v~dL~r--aGLRNpv~V~V~~k~~~~tPS~L~~~Y~v~~a-----~eK~~~lv~~L~~~~~kK~iVFF~T 264 (567)
T KOG0345|consen 192 GLFSATQTQEVEDLAR--AGLRNPVRVSVKEKSKSATPSSLALEYLVCEA-----DEKLSQLVHLLNNNKDKKCIVFFPT 264 (567)
T ss_pred ccccchhhHHHHHHHH--hhccCceeeeecccccccCchhhcceeeEecH-----HHHHHHHHHHHhccccccEEEEecC
Confidence 7999999 3444442 345566666665544 34 5555653222 1111122233222333444555555
Q ss_pred HHHHHHHHHHHHHHHHHhhhhccccccCCccccCCCCCccccchhHHhHHHHHhhcCcccccccccCCCCCcccccCccc
Q 038192 247 QREVEYLCSKLRKASKQLLVNSSKENKGNQVVADSEPNATKDINMKEINEAFEIQGYSTEQQTDRFSSYDEDQFDIDDNE 326 (764)
Q Consensus 247 ~~~ie~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~ 326 (764)
-..++|+..
T Consensus 265 CasVeYf~~----------------------------------------------------------------------- 273 (567)
T KOG0345|consen 265 CASVEYFGK----------------------------------------------------------------------- 273 (567)
T ss_pred cchHHHHHH-----------------------------------------------------------------------
Confidence 444444433
Q ss_pred cccccCccchhhhhhccchhhhhhhcCCCCCCCCcccccccchhhhhHHHHHHhhcCCCCCCCccccCCCCCCCCcCCCC
Q 038192 327 LDALSDSETESETEILGEDEKLVEQKCPMDGDDPVDVLKENWSLGSLKLAFEVLSGKNASGPSSQMKLSTPAIPEQCTEL 406 (764)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilvfl~g~~~i~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (764)
.+..+
T Consensus 274 -------------------------------------------------~~~~~-------------------------- 278 (567)
T KOG0345|consen 274 -------------------------------------------------LFSRL-------------------------- 278 (567)
T ss_pred -------------------------------------------------HHHHH--------------------------
Confidence 33222
Q ss_pred CCCCCCCCCCCCCCCccccccCcccCCCCCeEEEecCCCCCHHHHHhhhccCCCCceEEEEecCcccccCCCCCeEEEEe
Q 038192 407 PPTPTPEQCPELSSPDVEKMGDNKRAGVGALCVLPLYAMLPAAAQLRVFEDVKEGERLVVVSTNVAETSLTIPGIKYVVD 486 (764)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~pLHs~l~~~eQ~~vf~~~~~g~rKVIlsTNIAEtSITIpdV~~VID 486 (764)
.....++.+||.|.+.+|.++|..|.+...-|++|||||.+||+||||.|||
T Consensus 279 ---------------------------l~~~~i~~iHGK~~q~~R~k~~~~F~~~~~~vl~~TDVaARGlDip~iD~Vv- 330 (567)
T KOG0345|consen 279 ---------------------------LKKREIFSIHGKMSQKARAKVLEAFRKLSNGVLFCTDVAARGLDIPGIDLVV- 330 (567)
T ss_pred ---------------------------hCCCcEEEecchhcchhHHHHHHHHHhccCceEEeehhhhccCCCCCceEEE-
Confidence 0246799999999999999999999888888999999999999999999999
Q ss_pred CCcccceeeccCCCccccceeeccHHhHHHhccccCCCCC-C--EEEEccCHHHhcccCCCCCCCcccccCh
Q 038192 487 TGREKVKKYNSANGIESYEIQWISKASAAQRAGRAGRTAP-G--HCYRLYSSAVFNNILPDFSCAEISKVPV 555 (764)
Q Consensus 487 ~G~~K~~~yd~~~~~~~l~~~~iSkasa~QR~GRAGR~~~-G--~cyrLys~~~~~~~l~~~~~PEI~r~~L 555 (764)
.|||+...++++ ||+|||||.+. | +.|-+=.++.|.+.|.-...|++.|...
T Consensus 331 -------Q~DpP~~~~~Fv----------HR~GRTaR~gr~G~Aivfl~p~E~aYveFl~i~~~v~le~~~~ 385 (567)
T KOG0345|consen 331 -------QFDPPKDPSSFV----------HRCGRTARAGREGNAIVFLNPREEAYVEFLRIKGKVELERIDT 385 (567)
T ss_pred -------ecCCCCChhHHH----------hhcchhhhccCccceEEEecccHHHHHHHHHhcCccchhhhcc
Confidence 599998877666 99999887765 5 4555666777877676566677666543
No 27
>PRK02362 ski2-like helicase; Provisional
Probab=99.96 E-value=2.3e-27 Score=284.76 Aligned_cols=428 Identities=18% Similarity=0.214 Sum_probs=261.8
Q ss_pred chhhHHHHHHH-HHcCCeEEEEecCCCCccccHHHHHHHhccCCCCCCCCCceEEEecccHHHHHHHHHHHHHHhCCCCC
Q 038192 36 IVMMEQEIMEA-VNDNSAVIICGETGCGKTTQVPQFLFEAGFGSNRCSSRSGRIGVTQPRRVAVLATAKRVAFELGLHLG 114 (764)
Q Consensus 36 i~~~~~~Il~~-l~~~~vviI~GeTGSGKTTqvPq~Lle~~~~~~~~~~~~~~Ii~tQPRRiaAisvA~RVa~E~g~~lG 114 (764)
.+..|.+.+++ +.+++.++++++||||||...-..++..... .+++++..|+|..|.+..+++.. ++ .+|
T Consensus 24 l~p~Q~~ai~~~~~~g~nvlv~APTGSGKTlia~lail~~l~~-------~~kal~i~P~raLa~q~~~~~~~-~~-~~g 94 (737)
T PRK02362 24 LYPPQAEAVEAGLLDGKNLLAAIPTASGKTLIAELAMLKAIAR-------GGKALYIVPLRALASEKFEEFER-FE-ELG 94 (737)
T ss_pred CCHHHHHHHHHHHhCCCcEEEECCCcchHHHHHHHHHHHHHhc-------CCcEEEEeChHHHHHHHHHHHHH-hh-cCC
Confidence 34556666666 7888889999999999999877667765421 15799999999999999988863 43 235
Q ss_pred CEeeEEeccCc---ccCCCceEEEEchHHHHHHHHH-----------HHHHHHHHHhhcc-------ccCCccCCCCceE
Q 038192 115 KEVGFQVRHDK---KIGDSCSIKFMTDGILLRELKA-----------LYEKQQQLLRSGQ-------CIEPKDRVFPLKL 173 (764)
Q Consensus 115 ~~VGY~ir~e~---~~s~~t~I~f~T~GiLLr~l~~-----------i~de~~~~l~~~~-------~~~~~~~~~~lKl 173 (764)
..|+--...-+ ..-...+|++||++.+...+.. |+||+|.+...++ +..+....++.|+
T Consensus 95 ~~v~~~tGd~~~~~~~l~~~~IiV~Tpek~~~llr~~~~~l~~v~lvViDE~H~l~d~~rg~~le~il~rl~~~~~~~qi 174 (737)
T PRK02362 95 VRVGISTGDYDSRDEWLGDNDIIVATSEKVDSLLRNGAPWLDDITCVVVDEVHLIDSANRGPTLEVTLAKLRRLNPDLQV 174 (737)
T ss_pred CEEEEEeCCcCccccccCCCCEEEECHHHHHHHHhcChhhhhhcCEEEEECccccCCCcchHHHHHHHHHHHhcCCCCcE
Confidence 55543222111 1113578999999988665531 4588875432211 1111223467899
Q ss_pred EEeeccc-chhhhccccCCCCCCCeeeeCCccccee--------EEecCCC-chh-hHHHHHHHHHHHHhhcCCCCCeEE
Q 038192 174 ILMSATL-RVEDFISGGRLFRNPPIIEVPTRQFPVT--------VHFSKRT-EIV-DYIGQAYKKVMSIHKRLPQGGILV 242 (764)
Q Consensus 174 ILMSATl-~~~~f~~~~~~f~~~~vi~i~gr~~pV~--------~~y~~~~-~~~-d~l~~~~~~v~~i~~~~~~g~ilv 242 (764)
|.||||+ +++.+. .+++. ..+....|..|+. .+|.... .+. ..-...+..+.+... ..+.+||
T Consensus 175 i~lSATl~n~~~la---~wl~~-~~~~~~~rpv~l~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~LV 248 (737)
T PRK02362 175 VALSATIGNADELA---DWLDA-ELVDSEWRPIDLREGVFYGGAIHFDDSQREVEVPSKDDTLNLVLDTLE--EGGQCLV 248 (737)
T ss_pred EEEcccCCCHHHHH---HHhCC-CcccCCCCCCCCeeeEecCCeeccccccccCCCccchHHHHHHHHHHH--cCCCeEE
Confidence 9999999 666665 23332 1111111222221 1121110 000 000122223333322 4678999
Q ss_pred ecCCHHHHHHHHHHHHHHHHHhhhhccccccCCccccCCCCCccccchhHHhHHHHHhhcCcccccccccCCCCCccccc
Q 038192 243 FVTGQREVEYLCSKLRKASKQLLVNSSKENKGNQVVADSEPNATKDINMKEINEAFEIQGYSTEQQTDRFSSYDEDQFDI 322 (764)
Q Consensus 243 F~~g~~~ie~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~ 322 (764)
|++++++++.+++.|........ ...+...+....+
T Consensus 249 F~~sr~~~~~~a~~L~~~~~~~~---------------------~~~~~~~~~~~~~----------------------- 284 (737)
T PRK02362 249 FVSSRRNAEGFAKRAASALKKTL---------------------TAAERAELAELAE----------------------- 284 (737)
T ss_pred EEeCHHHHHHHHHHHHHHhhhcC---------------------CHHHHHHHHHHHH-----------------------
Confidence 99999999999988865321100 0000000000000
Q ss_pred CccccccccCccchhhhhhccchhhhhhhcCCCCCCCCcccccccchhhhhHHHHHHhhcCCCCCCCccccCCCCCCCCc
Q 038192 323 DDNELDALSDSETESETEILGEDEKLVEQKCPMDGDDPVDVLKENWSLGSLKLAFEVLSGKNASGPSSQMKLSTPAIPEQ 402 (764)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilvfl~g~~~i~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 402 (764)
.+ . ... ++. .-..|..+
T Consensus 285 ------------------------~l-~-~~~----------~~~-~~~~L~~~-------------------------- 301 (737)
T PRK02362 285 ------------------------EI-R-EVS----------DTE-TSKDLADC-------------------------- 301 (737)
T ss_pred ------------------------HH-H-hcc----------Ccc-ccHHHHHH--------------------------
Confidence 00 0 000 000 00000000
Q ss_pred CCCCCCCCCCCCCCCCCCCccccccCcccCCCCCeEEEecCCCCCHHHHHhhhccCCCCceEEEEecCcccccCCCCCeE
Q 038192 403 CTELPPTPTPEQCPELSSPDVEKMGDNKRAGVGALCVLPLYAMLPAAAQLRVFEDVKEGERLVVVSTNVAETSLTIPGIK 482 (764)
Q Consensus 403 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~pLHs~l~~~eQ~~vf~~~~~g~rKVIlsTNIAEtSITIpdV~ 482 (764)
-...|..+||+|++.+|..+++.|.+|..+|++||+++++||++|+++
T Consensus 302 --------------------------------l~~gva~hHagl~~~eR~~ve~~Fr~G~i~VLvaT~tla~GvnlPa~~ 349 (737)
T PRK02362 302 --------------------------------VAKGAAFHHAGLSREHRELVEDAFRDRLIKVISSTPTLAAGLNLPARR 349 (737)
T ss_pred --------------------------------HHhCEEeecCCCCHHHHHHHHHHHHcCCCeEEEechhhhhhcCCCceE
Confidence 013478889999999999999999999999999999999999999999
Q ss_pred EEEeCCcccceeeccCCCccccceeeccHHhHHHhccccCCCCC---CEEEEccCHH-----HhcccCCCCCCCccccc-
Q 038192 483 YVVDTGREKVKKYNSANGIESYEIQWISKASAAQRAGRAGRTAP---GHCYRLYSSA-----VFNNILPDFSCAEISKV- 553 (764)
Q Consensus 483 ~VID~G~~K~~~yd~~~~~~~l~~~~iSkasa~QR~GRAGR~~~---G~cyrLys~~-----~~~~~l~~~~~PEI~r~- 553 (764)
+||+. .+.||+..+. .++|.+++.||+|||||.+- |.||-+.... .|+..+.. .||-...
T Consensus 350 VVI~~----~~~yd~~~g~-----~~~s~~~y~Qm~GRAGR~g~d~~G~~ii~~~~~~~~~~~~~~~l~~--~~~~i~S~ 418 (737)
T PRK02362 350 VIIRD----YRRYDGGAGM-----QPIPVLEYHQMAGRAGRPGLDPYGEAVLLAKSYDELDELFERYIWA--DPEDVRSK 418 (737)
T ss_pred EEEec----ceeecCCCCc-----eeCCHHHHHHHhhcCCCCCCCCCceEEEEecCchhHHHHHHHHHhC--CCCceeec
Confidence 99964 3468865432 58999999999999999874 9999998653 23332321 2322222
Q ss_pred -----ChhhHHHHHHHcCC----CCCCCC---CCCCCC------CHHHHHHHHHHHHHcccccCCC---CccHHHHHHhc
Q 038192 554 -----PVDGVVLLMKSMNI----DKVSNF---PFPTPP------EVTALVEAERCLKALEALDSNG---RLTALGKAMAH 612 (764)
Q Consensus 554 -----~L~~~~L~lk~l~~----~~~~~f---~~~~pP------~~~~i~~ai~~L~~lgAld~~~---~LT~LG~~la~ 612 (764)
.|...+|..-+.|. .++.+| .|...+ -.+.+..+++.|...|.++.++ ..|++|+.++.
T Consensus 419 l~~~~~l~~~lla~I~~~~~~~~~d~~~~l~~Tf~~~~~~~~~~l~~~v~~~l~~L~~~~~i~~~~~~~~~t~lG~~~s~ 498 (737)
T PRK02362 419 LATEPALRTHVLSTIASGFARTRDGLLEFLEATFYATQTDDTGRLERVVDDVLDFLERNGMIEEDGETLEATELGHLVSR 498 (737)
T ss_pred CCChhhHHHHHHHHHHhCccCCHHHHHHHHHhChHHhhccchHHHHHHHHHHHHHHHHCCCeeecCCeEeEChHHHHHHH
Confidence 24444555555542 122222 232222 1245789999999999998765 49999999999
Q ss_pred CCCChHHHHHHHHHHh
Q 038192 613 YPMSPRHSRMLLTLIQ 628 (764)
Q Consensus 613 LPvdp~lgkmLl~~~~ 628 (764)
++++|..++.+..++.
T Consensus 499 ~~l~~~t~~~~~~~l~ 514 (737)
T PRK02362 499 LYIDPLSAAEIIDGLE 514 (737)
T ss_pred hcCCHHHHHHHHHHhh
Confidence 9999999999987653
No 28
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=99.96 E-value=1.6e-27 Score=271.51 Aligned_cols=305 Identities=22% Similarity=0.243 Sum_probs=201.8
Q ss_pred cCCCchhhHHHHHHHHHcCCeEEEEecCCCCccccHHHHHHHhccCCCC--CCCCCceEEEecccHHHHHHHHHHHHHHh
Q 038192 32 KDLPIVMMEQEIMEAVNDNSAVIICGETGCGKTTQVPQFLFEAGFGSNR--CSSRSGRIGVTQPRRVAVLATAKRVAFEL 109 (764)
Q Consensus 32 ~~LPi~~~~~~Il~~l~~~~vviI~GeTGSGKTTqvPq~Lle~~~~~~~--~~~~~~~Ii~tQPRRiaAisvA~RVa~E~ 109 (764)
-.-|... |.+.+..+.+++.++++++||||||..+-..+++....... ....+.++++..|+|.+|.++.+.+...
T Consensus 21 ~~~pt~i-Q~~ai~~il~g~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~aLil~PtreLa~Qi~~~~~~~- 98 (456)
T PRK10590 21 YREPTPI-QQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRRPVRALILTPTRELAAQIGENVRDY- 98 (456)
T ss_pred CCCCCHH-HHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHhhhcccccccCCCceEEEEeCcHHHHHHHHHHHHHH-
Confidence 3445544 55555666677779999999999999876666664322110 1123458999999999999998876543
Q ss_pred CCCCCCEeeEEeccCc------ccCCCceEEEEchHHHHHHHHH-----------HHHHHHHHHhhccccCC----ccCC
Q 038192 110 GLHLGKEVGFQVRHDK------KIGDSCSIKFMTDGILLRELKA-----------LYEKQQQLLRSGQCIEP----KDRV 168 (764)
Q Consensus 110 g~~lG~~VGY~ir~e~------~~s~~t~I~f~T~GiLLr~l~~-----------i~de~~~~l~~~~~~~~----~~~~ 168 (764)
...++..+..-+...+ ......+|+|||||+|++.+.. |+||+|.++..++...+ ....
T Consensus 99 ~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IiV~TP~rL~~~~~~~~~~l~~v~~lViDEah~ll~~~~~~~i~~il~~l~ 178 (456)
T PRK10590 99 SKYLNIRSLVVFGGVSINPQMMKLRGGVDVLVATPGRLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLAKLP 178 (456)
T ss_pred hccCCCEEEEEECCcCHHHHHHHHcCCCcEEEEChHHHHHHHHcCCcccccceEEEeecHHHHhccccHHHHHHHHHhCC
Confidence 3333332221111111 2235678999999999998742 67999998877653211 1223
Q ss_pred CCceEEEeecccch--hhhccccCCCCCCCeeeeCCcccc---eeEEecCCCchhhHHHHHHHHHHHHhhcCCCCCeEEe
Q 038192 169 FPLKLILMSATLRV--EDFISGGRLFRNPPIIEVPTRQFP---VTVHFSKRTEIVDYIGQAYKKVMSIHKRLPQGGILVF 243 (764)
Q Consensus 169 ~~lKlILMSATl~~--~~f~~~~~~f~~~~vi~i~gr~~p---V~~~y~~~~~~~d~l~~~~~~v~~i~~~~~~g~ilvF 243 (764)
+..++++||||+.. ..+.. .++.++..+.+..+... +..++..... .+ .... +..+........+|||
T Consensus 179 ~~~q~l~~SAT~~~~~~~l~~--~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~-~~-k~~~---l~~l~~~~~~~~~lVF 251 (456)
T PRK10590 179 AKRQNLLFSATFSDDIKALAE--KLLHNPLEIEVARRNTASEQVTQHVHFVDK-KR-KREL---LSQMIGKGNWQQVLVF 251 (456)
T ss_pred ccCeEEEEeCCCcHHHHHHHH--HHcCCCeEEEEecccccccceeEEEEEcCH-HH-HHHH---HHHHHHcCCCCcEEEE
Confidence 45689999999954 34443 56666666655433221 2222211000 00 0111 1122222334567888
Q ss_pred cCCHHHHHHHHHHHHHHHHHhhhhccccccCCccccCCCCCccccchhHHhHHHHHhhcCcccccccccCCCCCcccccC
Q 038192 244 VTGQREVEYLCSKLRKASKQLLVNSSKENKGNQVVADSEPNATKDINMKEINEAFEIQGYSTEQQTDRFSSYDEDQFDID 323 (764)
Q Consensus 244 ~~g~~~ie~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~ 323 (764)
+++...++.++..|.+
T Consensus 252 ~~t~~~~~~l~~~L~~---------------------------------------------------------------- 267 (456)
T PRK10590 252 TRTKHGANHLAEQLNK---------------------------------------------------------------- 267 (456)
T ss_pred cCcHHHHHHHHHHHHH----------------------------------------------------------------
Confidence 8887777666555421
Q ss_pred ccccccccCccchhhhhhccchhhhhhhcCCCCCCCCcccccccchhhhhHHHHHHhhcCCCCCCCccccCCCCCCCCcC
Q 038192 324 DNELDALSDSETESETEILGEDEKLVEQKCPMDGDDPVDVLKENWSLGSLKLAFEVLSGKNASGPSSQMKLSTPAIPEQC 403 (764)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilvfl~g~~~i~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 403 (764)
T Consensus 268 -------------------------------------------------------------------------------- 267 (456)
T PRK10590 268 -------------------------------------------------------------------------------- 267 (456)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCCCCCCCCCCCccccccCcccCCCCCeEEEecCCCCCHHHHHhhhccCCCCceEEEEecCcccccCCCCCeEE
Q 038192 404 TELPPTPTPEQCPELSSPDVEKMGDNKRAGVGALCVLPLYAMLPAAAQLRVFEDVKEGERLVVVSTNVAETSLTIPGIKY 483 (764)
Q Consensus 404 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~pLHs~l~~~eQ~~vf~~~~~g~rKVIlsTNIAEtSITIpdV~~ 483 (764)
.++.+..+||+|++.+|.++++.|.+|..+|+|||+++++||+||+|.+
T Consensus 268 -------------------------------~g~~~~~lhg~~~~~~R~~~l~~F~~g~~~iLVaTdv~~rGiDip~v~~ 316 (456)
T PRK10590 268 -------------------------------DGIRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPH 316 (456)
T ss_pred -------------------------------CCCCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEccHHhcCCCcccCCE
Confidence 1245788999999999999999999999999999999999999999999
Q ss_pred EEeCCcccceeeccCCCccccceeeccHHhHHHhccccCCCCC-CEEEEccCHHHh
Q 038192 484 VVDTGREKVKKYNSANGIESYEIQWISKASAAQRAGRAGRTAP-GHCYRLYSSAVF 538 (764)
Q Consensus 484 VID~G~~K~~~yd~~~~~~~l~~~~iSkasa~QR~GRAGR~~~-G~cyrLys~~~~ 538 (764)
||+ ||.+. +..+|.||+|||||.+. |.|+-|++..+.
T Consensus 317 VI~--------~~~P~----------~~~~yvqR~GRaGR~g~~G~ai~l~~~~d~ 354 (456)
T PRK10590 317 VVN--------YELPN----------VPEDYVHRIGRTGRAAATGEALSLVCVDEH 354 (456)
T ss_pred EEE--------eCCCC----------CHHHhhhhccccccCCCCeeEEEEecHHHH
Confidence 998 55433 44567799999999886 999999987654
No 29
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.95 E-value=4e-27 Score=269.74 Aligned_cols=301 Identities=21% Similarity=0.246 Sum_probs=203.0
Q ss_pred chhhHHHHHHHHHcCCeEEEEecCCCCccccHHHHHHHhccCCCCC---CCCCceEEEecccHHHHHHHHHHHHHHhCCC
Q 038192 36 IVMMEQEIMEAVNDNSAVIICGETGCGKTTQVPQFLFEAGFGSNRC---SSRSGRIGVTQPRRVAVLATAKRVAFELGLH 112 (764)
Q Consensus 36 i~~~~~~Il~~l~~~~vviI~GeTGSGKTTqvPq~Lle~~~~~~~~---~~~~~~Ii~tQPRRiaAisvA~RVa~E~g~~ 112 (764)
.+.+|.+.+..+.+++.+|++++||||||...-..+++........ .....++++..|+|.+|.++++.+ .++...
T Consensus 110 ~~~iQ~~ai~~~~~G~dvi~~apTGSGKTlay~lpil~~l~~~~~~~~~~~~~~~aLil~PtreLa~Q~~~~~-~~l~~~ 188 (475)
T PRK01297 110 CTPIQAQVLGYTLAGHDAIGRAQTGTGKTAAFLISIINQLLQTPPPKERYMGEPRALIIAPTRELVVQIAKDA-AALTKY 188 (475)
T ss_pred CCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhcCcccccccCCceEEEEeCcHHHHHHHHHHH-HHhhcc
Confidence 3577888888888888899999999999987666666643322100 001257899999999999998855 445444
Q ss_pred CCCEeeEEeccCc-------ccCCCceEEEEchHHHHHHHHH-----------HHHHHHHHHhhccccC---Cc---cCC
Q 038192 113 LGKEVGFQVRHDK-------KIGDSCSIKFMTDGILLRELKA-----------LYEKQQQLLRSGQCIE---PK---DRV 168 (764)
Q Consensus 113 lG~~VGY~ir~e~-------~~s~~t~I~f~T~GiLLr~l~~-----------i~de~~~~l~~~~~~~---~~---~~~ 168 (764)
.|..|.--+...+ .....++|+++|+|+|++.+.. |+||+|.++..++... +. ...
T Consensus 189 ~~~~v~~~~gg~~~~~~~~~~~~~~~~Iiv~TP~~Ll~~~~~~~~~l~~l~~lViDEah~l~~~~~~~~l~~i~~~~~~~ 268 (475)
T PRK01297 189 TGLNVMTFVGGMDFDKQLKQLEARFCDILVATPGRLLDFNQRGEVHLDMVEVMVLDEADRMLDMGFIPQVRQIIRQTPRK 268 (475)
T ss_pred CCCEEEEEEccCChHHHHHHHhCCCCCEEEECHHHHHHHHHcCCcccccCceEEechHHHHHhcccHHHHHHHHHhCCCC
Confidence 4544432222211 1134578999999999987742 6799998876655311 11 112
Q ss_pred CCceEEEeecccch--hhhccccCCCCCCCeeeeCCcccc---eeEEecCCCchhhHHHHHHHHHHHHhhcCCCCCeEEe
Q 038192 169 FPLKLILMSATLRV--EDFISGGRLFRNPPIIEVPTRQFP---VTVHFSKRTEIVDYIGQAYKKVMSIHKRLPQGGILVF 243 (764)
Q Consensus 169 ~~lKlILMSATl~~--~~f~~~~~~f~~~~vi~i~gr~~p---V~~~y~~~~~~~d~l~~~~~~v~~i~~~~~~g~ilvF 243 (764)
.+.++|+||||+.. ..+.. .+..++.++.+...... ++.++..... .+ ....+..+....+...+|||
T Consensus 269 ~~~q~i~~SAT~~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~-~~----k~~~l~~ll~~~~~~~~IVF 341 (475)
T PRK01297 269 EERQTLLFSATFTDDVMNLAK--QWTTDPAIVEIEPENVASDTVEQHVYAVAG-SD----KYKLLYNLVTQNPWERVMVF 341 (475)
T ss_pred CCceEEEEEeecCHHHHHHHH--HhccCCEEEEeccCcCCCCcccEEEEEecc-hh----HHHHHHHHHHhcCCCeEEEE
Confidence 35689999999943 34443 45555555555433221 2222211111 11 11112222223344578888
Q ss_pred cCCHHHHHHHHHHHHHHHHHhhhhccccccCCccccCCCCCccccchhHHhHHHHHhhcCcccccccccCCCCCcccccC
Q 038192 244 VTGQREVEYLCSKLRKASKQLLVNSSKENKGNQVVADSEPNATKDINMKEINEAFEIQGYSTEQQTDRFSSYDEDQFDID 323 (764)
Q Consensus 244 ~~g~~~ie~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~ 323 (764)
+++...++.++..|.+
T Consensus 342 ~~s~~~~~~l~~~L~~---------------------------------------------------------------- 357 (475)
T PRK01297 342 ANRKDEVRRIEERLVK---------------------------------------------------------------- 357 (475)
T ss_pred eCCHHHHHHHHHHHHH----------------------------------------------------------------
Confidence 8888777766544421
Q ss_pred ccccccccCccchhhhhhccchhhhhhhcCCCCCCCCcccccccchhhhhHHHHHHhhcCCCCCCCccccCCCCCCCCcC
Q 038192 324 DNELDALSDSETESETEILGEDEKLVEQKCPMDGDDPVDVLKENWSLGSLKLAFEVLSGKNASGPSSQMKLSTPAIPEQC 403 (764)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilvfl~g~~~i~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 403 (764)
T Consensus 358 -------------------------------------------------------------------------------- 357 (475)
T PRK01297 358 -------------------------------------------------------------------------------- 357 (475)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCCCCCCCCCCCccccccCcccCCCCCeEEEecCCCCCHHHHHhhhccCCCCceEEEEecCcccccCCCCCeEE
Q 038192 404 TELPPTPTPEQCPELSSPDVEKMGDNKRAGVGALCVLPLYAMLPAAAQLRVFEDVKEGERLVVVSTNVAETSLTIPGIKY 483 (764)
Q Consensus 404 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~pLHs~l~~~eQ~~vf~~~~~g~rKVIlsTNIAEtSITIpdV~~ 483 (764)
.++.+..+||+++.++|.++++.|..|..+||+|||++|+||+||+|.+
T Consensus 358 -------------------------------~~~~~~~~~g~~~~~~R~~~~~~Fr~G~~~vLvaT~~l~~GIDi~~v~~ 406 (475)
T PRK01297 358 -------------------------------DGINAAQLSGDVPQHKRIKTLEGFREGKIRVLVATDVAGRGIHIDGISH 406 (475)
T ss_pred -------------------------------cCCCEEEEECCCCHHHHHHHHHHHhCCCCcEEEEccccccCCcccCCCE
Confidence 1234677899999999999999999999999999999999999999999
Q ss_pred EEeCCcccceeeccCCCccccceeeccHHhHHHhccccCCCCC-CEEEEccCHHH
Q 038192 484 VVDTGREKVKKYNSANGIESYEIQWISKASAAQRAGRAGRTAP-GHCYRLYSSAV 537 (764)
Q Consensus 484 VID~G~~K~~~yd~~~~~~~l~~~~iSkasa~QR~GRAGR~~~-G~cyrLys~~~ 537 (764)
||++|+ |-|.+++.||+|||||.+. |.|+-++++.+
T Consensus 407 VI~~~~------------------P~s~~~y~Qr~GRaGR~g~~g~~i~~~~~~d 443 (475)
T PRK01297 407 VINFTL------------------PEDPDDYVHRIGRTGRAGASGVSISFAGEDD 443 (475)
T ss_pred EEEeCC------------------CCCHHHHHHhhCccCCCCCCceEEEEecHHH
Confidence 998543 3467889999999999986 99999999763
No 30
>PTZ00424 helicase 45; Provisional
Probab=99.95 E-value=2.7e-27 Score=265.40 Aligned_cols=298 Identities=16% Similarity=0.246 Sum_probs=198.9
Q ss_pred hhHHHHHHHHHcCCeEEEEecCCCCccccHHHHHHHhccCCCCCCCCCceEEEecccHHHHHHHHHHHHHHhCCCCCCEe
Q 038192 38 MMEQEIMEAVNDNSAVIICGETGCGKTTQVPQFLFEAGFGSNRCSSRSGRIGVTQPRRVAVLATAKRVAFELGLHLGKEV 117 (764)
Q Consensus 38 ~~~~~Il~~l~~~~vviI~GeTGSGKTTqvPq~Lle~~~~~~~~~~~~~~Ii~tQPRRiaAisvA~RVa~E~g~~lG~~V 117 (764)
..|.+.+..+.+++.++++|+||||||......+++...... ..+++++..|+|.+|.++.+.+ ...+..++..+
T Consensus 53 ~~Q~~ai~~i~~~~d~ii~apTGsGKT~~~~l~~l~~~~~~~----~~~~~lil~Pt~~L~~Q~~~~~-~~~~~~~~~~~ 127 (401)
T PTZ00424 53 AIQQRGIKPILDGYDTIGQAQSGTGKTATFVIAALQLIDYDL----NACQALILAPTRELAQQIQKVV-LALGDYLKVRC 127 (401)
T ss_pred HHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhcCCC----CCceEEEECCCHHHHHHHHHHH-HHHhhhcCceE
Confidence 345556666666667889999999999987776666432111 1368999999999999987644 44444444443
Q ss_pred eEEeccCc------ccCCCceEEEEchHHHHHHHHH-----------HHHHHHHHHhhcccc---C-CccCCCCceEEEe
Q 038192 118 GFQVRHDK------KIGDSCSIKFMTDGILLRELKA-----------LYEKQQQLLRSGQCI---E-PKDRVFPLKLILM 176 (764)
Q Consensus 118 GY~ir~e~------~~s~~t~I~f~T~GiLLr~l~~-----------i~de~~~~l~~~~~~---~-~~~~~~~lKlILM 176 (764)
+-.+.... ....+++|+++|+|.|++.+.. |+||+|.++..++.. . .....++.++|+|
T Consensus 128 ~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~l~~i~lvViDEah~~~~~~~~~~~~~i~~~~~~~~~~i~~ 207 (401)
T PTZ00424 128 HACVGGTVVRDDINKLKAGVHMVVGTPGRVYDMIDKRHLRVDDLKLFILDEADEMLSRGFKGQIYDVFKKLPPDVQVALF 207 (401)
T ss_pred EEEECCcCHHHHHHHHcCCCCEEEECcHHHHHHHHhCCcccccccEEEEecHHHHHhcchHHHHHHHHhhCCCCcEEEEE
Confidence 33222211 2234578999999999988742 569998876554321 1 1223467899999
Q ss_pred ecccchh--hhccccCCCCCCCeeeeCCcccc---eeEEecCCCchhhHHHHHHHHHHHHhhcCCCCCeEEecCCHHHHH
Q 038192 177 SATLRVE--DFISGGRLFRNPPIIEVPTRQFP---VTVHFSKRTEIVDYIGQAYKKVMSIHKRLPQGGILVFVTGQREVE 251 (764)
Q Consensus 177 SATl~~~--~f~~~~~~f~~~~vi~i~gr~~p---V~~~y~~~~~~~d~l~~~~~~v~~i~~~~~~g~ilvF~~g~~~ie 251 (764)
|||+..+ .+.. .|+.++..+.++..... +..+|..... .++. ...+..+........++||+++.+.++
T Consensus 208 SAT~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~---~~~l~~~~~~~~~~~~ivF~~t~~~~~ 281 (401)
T PTZ00424 208 SATMPNEILELTT--KFMRDPKRILVKKDELTLEGIRQFYVAVEK-EEWK---FDTLCDLYETLTITQAIIYCNTRRKVD 281 (401)
T ss_pred EecCCHHHHHHHH--HHcCCCEEEEeCCCCcccCCceEEEEecCh-HHHH---HHHHHHHHHhcCCCeEEEEecCcHHHH
Confidence 9999543 3332 34444444444432221 2223321111 1221 122333333344566788888877666
Q ss_pred HHHHHHHHHHHHhhhhccccccCCccccCCCCCccccchhHHhHHHHHhhcCcccccccccCCCCCcccccCcccccccc
Q 038192 252 YLCSKLRKASKQLLVNSSKENKGNQVVADSEPNATKDINMKEINEAFEIQGYSTEQQTDRFSSYDEDQFDIDDNELDALS 331 (764)
Q Consensus 252 ~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~ 331 (764)
.++..|..
T Consensus 282 ~l~~~l~~------------------------------------------------------------------------ 289 (401)
T PTZ00424 282 YLTKKMHE------------------------------------------------------------------------ 289 (401)
T ss_pred HHHHHHHH------------------------------------------------------------------------
Confidence 65544421
Q ss_pred CccchhhhhhccchhhhhhhcCCCCCCCCcccccccchhhhhHHHHHHhhcCCCCCCCccccCCCCCCCCcCCCCCCCCC
Q 038192 332 DSETESETEILGEDEKLVEQKCPMDGDDPVDVLKENWSLGSLKLAFEVLSGKNASGPSSQMKLSTPAIPEQCTELPPTPT 411 (764)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilvfl~g~~~i~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 411 (764)
T Consensus 290 -------------------------------------------------------------------------------- 289 (401)
T PTZ00424 290 -------------------------------------------------------------------------------- 289 (401)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCCCccccccCcccCCCCCeEEEecCCCCCHHHHHhhhccCCCCceEEEEecCcccccCCCCCeEEEEeCCccc
Q 038192 412 PEQCPELSSPDVEKMGDNKRAGVGALCVLPLYAMLPAAAQLRVFEDVKEGERLVVVSTNVAETSLTIPGIKYVVDTGREK 491 (764)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~pLHs~l~~~eQ~~vf~~~~~g~rKVIlsTNIAEtSITIpdV~~VID~G~~K 491 (764)
.++.+..+||+|+.++|..+++.|++|..+|++||+++++||+||+|.+||+
T Consensus 290 -----------------------~~~~~~~~h~~~~~~~R~~i~~~f~~g~~~vLvaT~~l~~GiDip~v~~VI~----- 341 (401)
T PTZ00424 290 -----------------------RDFTVSCMHGDMDQKDRDLIMREFRSGSTRVLITTDLLARGIDVQQVSLVIN----- 341 (401)
T ss_pred -----------------------CCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEEcccccCCcCcccCCEEEE-----
Confidence 1245788999999999999999999999999999999999999999999997
Q ss_pred ceeeccCCCccccceeeccHHhHHHhccccCCCCC-CEEEEccCHHHhc
Q 038192 492 VKKYNSANGIESYEIQWISKASAAQRAGRAGRTAP-GHCYRLYSSAVFN 539 (764)
Q Consensus 492 ~~~yd~~~~~~~l~~~~iSkasa~QR~GRAGR~~~-G~cyrLys~~~~~ 539 (764)
||. +.|.+++.||+|||||.+. |.||.|+++....
T Consensus 342 ---~~~----------p~s~~~y~qr~GRagR~g~~G~~i~l~~~~~~~ 377 (401)
T PTZ00424 342 ---YDL----------PASPENYIHRIGRSGRFGRKGVAINFVTPDDIE 377 (401)
T ss_pred ---ECC----------CCCHHHEeecccccccCCCCceEEEEEcHHHHH
Confidence 443 3467777899999999875 9999999987654
No 31
>KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis]
Probab=99.95 E-value=2.3e-27 Score=239.30 Aligned_cols=303 Identities=18% Similarity=0.292 Sum_probs=229.0
Q ss_pred cCCCchhhHHHHHHHHHcCCeEEEEecCCCCccccHHHHHHHhccCCCCCCCCCceEEEecccHHHHHHHHHHHHHHhCC
Q 038192 32 KDLPIVMMEQEIMEAVNDNSAVIICGETGCGKTTQVPQFLFEAGFGSNRCSSRSGRIGVTQPRRVAVLATAKRVAFELGL 111 (764)
Q Consensus 32 ~~LPi~~~~~~Il~~l~~~~vviI~GeTGSGKTTqvPq~Lle~~~~~~~~~~~~~~Ii~tQPRRiaAisvA~RVa~E~g~ 111 (764)
-.-|...++.+|...++.++ ||.++..|+|||..+..-++...-.+. +..+++|.-|+|.+|.++-+ |-..+|.
T Consensus 47 fekPS~IQqrAi~~IlkGrd-ViaQaqSGTGKTa~~si~vlq~~d~~~----r~tQ~lilsPTRELa~Qi~~-vi~alg~ 120 (400)
T KOG0328|consen 47 FEKPSAIQQRAIPQILKGRD-VIAQAQSGTGKTATFSISVLQSLDISV----RETQALILSPTRELAVQIQK-VILALGD 120 (400)
T ss_pred cCCchHHHhhhhhhhhcccc-eEEEecCCCCceEEEEeeeeeeccccc----ceeeEEEecChHHHHHHHHH-HHHHhcc
Confidence 35677777888877777666 789999999999877666665432221 34689999999999999977 5556776
Q ss_pred CCCCEeeEEeccCc------ccCCCceEEEEchHHHHHHHHH-----------HHHHHHHHHhhccccCC---cc-CCCC
Q 038192 112 HLGKEVGFQVRHDK------KIGDSCSIKFMTDGILLRELKA-----------LYEKQQQLLRSGQCIEP---KD-RVFP 170 (764)
Q Consensus 112 ~lG~~VGY~ir~e~------~~s~~t~I~f~T~GiLLr~l~~-----------i~de~~~~l~~~~~~~~---~~-~~~~ 170 (764)
..+-.+--.+.+.+ +..-..+++.+|||++++++.. ++||+++++..|+...+ .+ ..|+
T Consensus 121 ~mnvq~hacigg~n~gedikkld~G~hvVsGtPGrv~dmikr~~L~tr~vkmlVLDEaDemL~kgfk~Qiydiyr~lp~~ 200 (400)
T KOG0328|consen 121 YMNVQCHACIGGKNLGEDIKKLDYGQHVVSGTPGRVLDMIKRRSLRTRAVKMLVLDEADEMLNKGFKEQIYDIYRYLPPG 200 (400)
T ss_pred cccceEEEEecCCccchhhhhhcccceEeeCCCchHHHHHHhccccccceeEEEeccHHHHHHhhHHHHHHHHHHhCCCC
Confidence 66555544444333 2345678999999999999953 68999999998874332 22 3468
Q ss_pred ceEEEeecccchhh--hccccCCCCCCCeeeeCCcccc---eeEEecCCCchhhHHHHHHHHHHHHhhcCCCCCeEEecC
Q 038192 171 LKLILMSATLRVED--FISGGRLFRNPPIIEVPTRQFP---VTVHFSKRTEIVDYIGQAYKKVMSIHKRLPQGGILVFVT 245 (764)
Q Consensus 171 lKlILMSATl~~~~--f~~~~~~f~~~~vi~i~gr~~p---V~~~y~~~~~~~d~l~~~~~~v~~i~~~~~~g~ilvF~~ 245 (764)
.++|++|||+.-+. ..+ +|..++..|.+.....+ ++.||..... +.| .++.++++..++.....++|++
T Consensus 201 ~Qvv~~SATlp~eilemt~--kfmtdpvrilvkrdeltlEgIKqf~v~ve~-Eew---KfdtLcdLYd~LtItQavIFcn 274 (400)
T KOG0328|consen 201 AQVVLVSATLPHEILEMTE--KFMTDPVRILVKRDELTLEGIKQFFVAVEK-EEW---KFDTLCDLYDTLTITQAVIFCN 274 (400)
T ss_pred ceEEEEeccCcHHHHHHHH--HhcCCceeEEEecCCCchhhhhhheeeech-hhh---hHhHHHHHhhhhehheEEEEec
Confidence 99999999995543 333 45555656666543333 3345543211 222 4567788888888888999999
Q ss_pred CHHHHHHHHHHHHHHHHHhhhhccccccCCccccCCCCCccccchhHHhHHHHHhhcCcccccccccCCCCCcccccCcc
Q 038192 246 GQREVEYLCSKLRKASKQLLVNSSKENKGNQVVADSEPNATKDINMKEINEAFEIQGYSTEQQTDRFSSYDEDQFDIDDN 325 (764)
Q Consensus 246 g~~~ie~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~ 325 (764)
+++.++|+.++|+.
T Consensus 275 Tk~kVdwLtekm~~------------------------------------------------------------------ 288 (400)
T KOG0328|consen 275 TKRKVDWLTEKMRE------------------------------------------------------------------ 288 (400)
T ss_pred ccchhhHHHHHHHh------------------------------------------------------------------
Confidence 99999999877753
Q ss_pred ccccccCccchhhhhhccchhhhhhhcCCCCCCCCcccccccchhhhhHHHHHHhhcCCCCCCCccccCCCCCCCCcCCC
Q 038192 326 ELDALSDSETESETEILGEDEKLVEQKCPMDGDDPVDVLKENWSLGSLKLAFEVLSGKNASGPSSQMKLSTPAIPEQCTE 405 (764)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilvfl~g~~~i~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (764)
T Consensus 289 -------------------------------------------------------------------------------- 288 (400)
T KOG0328|consen 289 -------------------------------------------------------------------------------- 288 (400)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCCCCCCCCCccccccCcccCCCCCeEEEecCCCCCHHHHHhhhccCCCCceEEEEecCcccccCCCCCeEEEE
Q 038192 406 LPPTPTPEQCPELSSPDVEKMGDNKRAGVGALCVLPLYAMLPAAAQLRVFEDVKEGERLVVVSTNVAETSLTIPGIKYVV 485 (764)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~pLHs~l~~~eQ~~vf~~~~~g~rKVIlsTNIAEtSITIpdV~~VI 485 (764)
..+.|-.+||.|+++||.++++.|+.|+-+|+++|++=.+||++|.|..||
T Consensus 289 -----------------------------~nftVssmHGDm~qkERd~im~dFRsg~SrvLitTDVwaRGiDv~qVslvi 339 (400)
T KOG0328|consen 289 -----------------------------ANFTVSSMHGDMEQKERDKIMNDFRSGKSRVLITTDVWARGIDVQQVSLVI 339 (400)
T ss_pred -----------------------------hCceeeeccCCcchhHHHHHHHHhhcCCceEEEEechhhccCCcceeEEEE
Confidence 135688899999999999999999999999999999999999999999999
Q ss_pred eCCcccceeeccCCCccccceeeccHHhHHHhccccCCCCC-CEEEEccCHHHhc
Q 038192 486 DTGREKVKKYNSANGIESYEIQWISKASAAQRAGRAGRTAP-GHCYRLYSSAVFN 539 (764)
Q Consensus 486 D~G~~K~~~yd~~~~~~~l~~~~iSkasa~QR~GRAGR~~~-G~cyrLys~~~~~ 539 (764)
| ||-++ .+..|.||.||+||.+. |++......++..
T Consensus 340 N--------YDLP~----------nre~YIHRIGRSGRFGRkGvainFVk~~d~~ 376 (400)
T KOG0328|consen 340 N--------YDLPN----------NRELYIHRIGRSGRFGRKGVAINFVKSDDLR 376 (400)
T ss_pred e--------cCCCc----------cHHHHhhhhccccccCCcceEEEEecHHHHH
Confidence 8 77554 45778899999999997 9999999887653
No 32
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=99.95 E-value=1.9e-30 Score=292.36 Aligned_cols=432 Identities=9% Similarity=-0.130 Sum_probs=331.1
Q ss_pred HhhhcCCCchhhHHHHHHHHHcCCeEEEEecCCCCccccHHHHHHHhccCCCCCCCCCceEEEecccHHHHHHHHHHHHH
Q 038192 28 ENNRKDLPIVMMEQEIMEAVNDNSAVIICGETGCGKTTQVPQFLFEAGFGSNRCSSRSGRIGVTQPRRVAVLATAKRVAF 107 (764)
Q Consensus 28 ~~~R~~LPi~~~~~~Il~~l~~~~vviI~GeTGSGKTTqvPq~Lle~~~~~~~~~~~~~~Ii~tQPRRiaAisvA~RVa~ 107 (764)
...+--+|+.+..+.|++++.+|.++++-+.|||||++|+||+|+|....... ..-|.++++|||+++|..++.+++.
T Consensus 399 ~getgcgk~tq~aq~iLe~~~~ns~g~~~na~v~qprrisaisiaerva~er~--e~~g~tvgy~vRf~Sa~prpyg~i~ 476 (1282)
T KOG0921|consen 399 KGETGCGKSTQVAQFLLESFLENSNGASFNAVVSQPRRISAISLAERVANERG--EEVGETCGYNVRFDSATPRPYGSIM 476 (1282)
T ss_pred eecccccchhHHHHHHHHHHhhccccccccceeccccccchHHHHHHHHHhhH--Hhhccccccccccccccccccccee
Confidence 34466799999999999999999999999999999999999999997654332 2357899999999999999999999
Q ss_pred HhCCCCCCEeeEEeccCccc-CCCceEEEEchHHHHHHHHH--------HHHHHH-HHHhhccccCCccCCCCceEEEee
Q 038192 108 ELGLHLGKEVGFQVRHDKKI-GDSCSIKFMTDGILLRELKA--------LYEKQQ-QLLRSGQCIEPKDRVFPLKLILMS 177 (764)
Q Consensus 108 E~g~~lG~~VGY~ir~e~~~-s~~t~I~f~T~GiLLr~l~~--------i~de~~-~~l~~~~~~~~~~~~~~lKlILMS 177 (764)
++++.++...||.++++... -..-.+.+||+|.||+.+.. +.++.+ +.|+.+++.......|+ +++|+
T Consensus 477 fctvgvllr~~e~glrg~sh~i~deiherdv~~dfll~~lr~m~~ty~dl~v~lmsatIdTd~f~~~f~~~p~--~~~~g 554 (1282)
T KOG0921|consen 477 FCTVGVLLRMMENGLRGISHVIIDEIHERDVDTDFVLIVLREMISTYRDLRVVLMSATIDTDLFTNFFSSIPD--VTVHG 554 (1282)
T ss_pred eeccchhhhhhhhcccccccccchhhhhhccchHHHHHHHHhhhccchhhhhhhhhcccchhhhhhhhccccc--eeecc
Confidence 99999999999999888643 45667899999999998742 333322 34555554443333344 59999
Q ss_pred cccchhhhccccCCCCCCCeeeeCCcccceeEEecCCCc--hhh-----H-------H-----------------HHHHH
Q 038192 178 ATLRVEDFISGGRLFRNPPIIEVPTRQFPVTVHFSKRTE--IVD-----Y-------I-----------------GQAYK 226 (764)
Q Consensus 178 ATl~~~~f~~~~~~f~~~~vi~i~gr~~pV~~~y~~~~~--~~d-----~-------l-----------------~~~~~ 226 (764)
+|+++..|- -+|-+++.+.||+++++++-+|..+.. ..| + . .....
T Consensus 555 rt~pvq~F~---led~~~~~~~vp~~~~~~k~k~~~~~~~~~~ddK~~n~n~~~dd~~~~~~~~am~~~se~d~~f~l~E 631 (1282)
T KOG0921|consen 555 RTFPVQSFF---LEDIIQMTQFVPSEPSQKKRKKDDDEEDEEVDDKGRNMNILCDPSYNESTRTAMSRLSEKDIPFGLIE 631 (1282)
T ss_pred ccccHHHHH---HHHhhhhhhccCCCcCccchhhcccccCchhhhcccccccccChhhcchhhhhhhcchhhcchhHHHH
Confidence 999999887 367789999999999999987754311 011 0 0 00000
Q ss_pred H-HHHHhhcCCCCCeEEecCCHHHHHHHHHHHHHHHHHhhhhccccccCCccccCCCCCccccchhHHhHHHHHhhcCcc
Q 038192 227 K-VMSIHKRLPQGGILVFVTGQREVEYLCSKLRKASKQLLVNSSKENKGNQVVADSEPNATKDINMKEINEAFEIQGYST 305 (764)
Q Consensus 227 ~-v~~i~~~~~~g~ilvF~~g~~~ie~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (764)
. ...|....-+|-|+||+++..++-.|+..+..
T Consensus 632 al~~~i~s~~i~gailvflpgwa~i~~L~~~ll~---------------------------------------------- 665 (1282)
T KOG0921|consen 632 ALLNDIASRNIDGAVLVFLPGWAEIMTLCNRLLE---------------------------------------------- 665 (1282)
T ss_pred HHHhhhcccCCccceeeecCchHHhhhhhhhhhh----------------------------------------------
Confidence 0 01111122245566666666666665555432
Q ss_pred cccccccCCCCCcccccCccccccccCccchhhhhhccchhhhhhhcCCCCCCCCcccccccchhhhhHHHHHHhhcCCC
Q 038192 306 EQQTDRFSSYDEDQFDIDDNELDALSDSETESETEILGEDEKLVEQKCPMDGDDPVDVLKENWSLGSLKLAFEVLSGKNA 385 (764)
Q Consensus 306 ~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilvfl~g~~~i~~l~~~~~~l~~~~~ 385 (764)
..+.-..+..
T Consensus 666 -----------------------------------------------------------------~~~fg~~~~y----- 675 (1282)
T KOG0921|consen 666 -----------------------------------------------------------------HQEFGQANKY----- 675 (1282)
T ss_pred -----------------------------------------------------------------hhhhccchhc-----
Confidence 1111100000
Q ss_pred CCCCccccCCCCCCCCcCCCCCCCCCCCCCCCCCCCccccccCcccCCCCCeEEEecCCCCCHHHHHhhhccCCCCceEE
Q 038192 386 SGPSSQMKLSTPAIPEQCTELPPTPTPEQCPELSSPDVEKMGDNKRAGVGALCVLPLYAMLPAAAQLRVFEDVKEGERLV 465 (764)
Q Consensus 386 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~pLHs~l~~~eQ~~vf~~~~~g~rKV 465 (764)
.++ ..+...+.++|+.+...++..||+..+.+.+++
T Consensus 676 -----------~il---------------------------------p~Hsq~~~~eqrkvf~~~p~gv~kii~stniae 711 (1282)
T KOG0921|consen 676 -----------EIL---------------------------------PLHSQLTSQEQRKVFEPVPEGVTKIILSTNIAE 711 (1282)
T ss_pred -----------ccc---------------------------------cchhhcccHhhhhccCcccccccccccccceee
Confidence 000 123456888999999999999999999999999
Q ss_pred EEecCcccccCCCCCeEEEEeCCcccceeeccCCCccccceeeccHHhHHHhccccCCCCCCEEEEccCHHHhcccCCCC
Q 038192 466 VVSTNVAETSLTIPGIKYVVDTGREKVKKYNSANGIESYEIQWISKASAAQRAGRAGRTAPGHCYRLYSSAVFNNILPDF 545 (764)
Q Consensus 466 IlsTNIAEtSITIpdV~~VID~G~~K~~~yd~~~~~~~l~~~~iSkasa~QR~GRAGR~~~G~cyrLys~~~~~~~l~~~ 545 (764)
+..|++++++|++-++.+|++++..+.+.+-....++...+.|-++-...||.|||+|.+.|.||++++...+.+ |..+
T Consensus 712 tsiTidd~v~vid~cka~~~~~~s~nn~~~~Atvw~sktn~eqr~gr~grvR~G~~f~lcs~arF~~l~~~~t~e-m~r~ 790 (1282)
T KOG0921|consen 712 TSITIDDVVYVIDSCKAKEKLFTSHNNMTHYATVWASKTNLEQRKGRAGRVRPGFCFHLCSRARFEALEDHGTAE-MFRT 790 (1282)
T ss_pred EeeeecceeEEEeeeeeeeeeeccccceeeeeeecccccchHhhcccCceecccccccccHHHHHHHHHhcCcHh-hhcC
Confidence 999999999999999999999999999998889999999999999999999999999999999999999999987 6789
Q ss_pred CCCcccccChhhHHHHHHHcCCCCCCCCC--CCCCCCHHHHHHHHHHHHHcccccCCCCccHHHHHHhcCCCChHHHHHH
Q 038192 546 SCAEISKVPVDGVVLLMKSMNIDKVSNFP--FPTPPEVTALVEAERCLKALEALDSNGRLTALGKAMAHYPMSPRHSRML 623 (764)
Q Consensus 546 ~~PEI~r~~L~~~~L~lk~l~~~~~~~f~--~~~pP~~~~i~~ai~~L~~lgAld~~~~LT~LG~~la~LPvdp~lgkmL 623 (764)
++|||.++++-...+.++.+-...+.-+| .+.||+......+.-.+...-+.+.+-.+|++|+.+..+|+.|..++|.
T Consensus 791 plhemalTikll~l~SI~~fl~kal~~~p~dav~e~e~~l~~m~~ld~n~elt~lg~~la~l~iep~~~k~~~lg~~~g~ 870 (1282)
T KOG0921|consen 791 PLHEIALTIKLLRLGSIGEFLGKALQPPPYDAVIEAEAVLREMGALDANDELTPLGRMLARLPIEPRIGKMMILGTALGA 870 (1282)
T ss_pred ccHHHHhhHHHHHhhhHHHHHhhccCCCchhhccCchHHHHHhhhhhccCcccchhhhhhhccCcccccceeeechhhcc
Confidence 99999999988888888777666666666 4777777766666555555556655667899999999999999999998
Q ss_pred HHHH
Q 038192 624 LTLI 627 (764)
Q Consensus 624 l~~~ 627 (764)
..++
T Consensus 871 ~~~m 874 (1282)
T KOG0921|consen 871 GSVM 874 (1282)
T ss_pred chhh
Confidence 8653
No 33
>KOG0343 consensus RNA Helicase [RNA processing and modification]
Probab=99.95 E-value=7.7e-28 Score=260.87 Aligned_cols=312 Identities=20% Similarity=0.249 Sum_probs=213.2
Q ss_pred cCCCchhhHHHHHHHHHcCCeEEEEecCCCCccccHHHHHHHhccCCCCCCCCCceEEEecccHHHHHHHHH---HHHHH
Q 038192 32 KDLPIVMMEQEIMEAVNDNSAVIICGETGCGKTTQVPQFLFEAGFGSNRCSSRSGRIGVTQPRRVAVLATAK---RVAFE 108 (764)
Q Consensus 32 ~~LPi~~~~~~Il~~l~~~~vviI~GeTGSGKTTqvPq~Lle~~~~~~~~~~~~~~Ii~tQPRRiaAisvA~---RVa~E 108 (764)
--.|.-.+++.|..+|++++ |+-.+.||||||..+..++||+.+..+=......-.+|.-|+|.+|.++.+ +|++.
T Consensus 89 fv~~teiQ~~~Ip~aL~G~D-vlGAAkTGSGKTLAFlvPvlE~L~r~kWs~~DGlGalIISPTRELA~QtFevL~kvgk~ 167 (758)
T KOG0343|consen 89 FVKMTEIQRDTIPMALQGHD-VLGAAKTGSGKTLAFLVPVLEALYRLKWSPTDGLGALIISPTRELALQTFEVLNKVGKH 167 (758)
T ss_pred CccHHHHHHhhcchhccCcc-cccccccCCCceeeehHHHHHHHHHcCCCCCCCceeEEecchHHHHHHHHHHHHHHhhc
Confidence 34556677888888888888 688899999999998878887654322111112346677899999988765 44444
Q ss_pred hCCCCCCEeeE-EeccCcccCCCceEEEEchHHHHHHHHH------------HHHHHHHHHhhccccCCc----cCCCCc
Q 038192 109 LGLHLGKEVGF-QVRHDKKIGDSCSIKFMTDGILLRELKA------------LYEKQQQLLRSGQCIEPK----DRVFPL 171 (764)
Q Consensus 109 ~g~~lG~~VGY-~ir~e~~~s~~t~I~f~T~GiLLr~l~~------------i~de~~~~l~~~~~~~~~----~~~~~l 171 (764)
.+-..|-.+|. .+.+|...-.+.+|++||||+||++|++ |+||++++|++||...+. ...+.-
T Consensus 168 h~fSaGLiiGG~~~k~E~eRi~~mNILVCTPGRLLQHmde~~~f~t~~lQmLvLDEADR~LDMGFk~tL~~Ii~~lP~~R 247 (758)
T KOG0343|consen 168 HDFSAGLIIGGKDVKFELERISQMNILVCTPGRLLQHMDENPNFSTSNLQMLVLDEADRMLDMGFKKTLNAIIENLPKKR 247 (758)
T ss_pred cccccceeecCchhHHHHHhhhcCCeEEechHHHHHHhhhcCCCCCCcceEEEeccHHHHHHHhHHHHHHHHHHhCChhh
Confidence 44444444442 2344443445788999999999999975 789999999999864332 234567
Q ss_pred eEEEeeccc--chhhhccccCC-CCCCCeeeeCCcccceeEEecCCCchhhHHHHHHHHHHHHhhcCCCCCeEEecCCHH
Q 038192 172 KLILMSATL--RVEDFISGGRL-FRNPPIIEVPTRQFPVTVHFSKRTEIVDYIGQAYKKVMSIHKRLPQGGILVFVTGQR 248 (764)
Q Consensus 172 KlILMSATl--~~~~f~~~~~~-f~~~~vi~i~gr~~pV~~~y~~~~~~~d~l~~~~~~v~~i~~~~~~g~ilvF~~g~~ 248 (764)
+.+|+|||- .+.+++ ++ ..++..|.|-... + +. + ...+.+ ..+-++-..
T Consensus 248 QTLLFSATqt~svkdLa---RLsL~dP~~vsvhe~a----~-~a--t--P~~L~Q----------------~y~~v~l~~ 299 (758)
T KOG0343|consen 248 QTLLFSATQTKSVKDLA---RLSLKDPVYVSVHENA----V-AA--T--PSNLQQ----------------SYVIVPLED 299 (758)
T ss_pred eeeeeecccchhHHHHH---HhhcCCCcEEEEeccc----c-cc--C--hhhhhh----------------eEEEEehhh
Confidence 899999998 555555 23 3555555543110 0 00 0 011110 112233334
Q ss_pred HHHHHHHHHHHHHHHhhhhccccccCCccccCCCCCccccchhHHhHHHHHhhcCcccccccccCCCCCcccccCccccc
Q 038192 249 EVEYLCSKLRKASKQLLVNSSKENKGNQVVADSEPNATKDINMKEINEAFEIQGYSTEQQTDRFSSYDEDQFDIDDNELD 328 (764)
Q Consensus 249 ~ie~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~ 328 (764)
.++.+...++.+
T Consensus 300 Ki~~L~sFI~sh-------------------------------------------------------------------- 311 (758)
T KOG0343|consen 300 KIDMLWSFIKSH-------------------------------------------------------------------- 311 (758)
T ss_pred HHHHHHHHHHhc--------------------------------------------------------------------
Confidence 444443333221
Q ss_pred cccCccchhhhhhccchhhhhhhcCCCCCCCCcccccccchhhhhHHHHHHhhcCCCCCCCccccCCCCCCCCcCCCCCC
Q 038192 329 ALSDSETESETEILGEDEKLVEQKCPMDGDDPVDVLKENWSLGSLKLAFEVLSGKNASGPSSQMKLSTPAIPEQCTELPP 408 (764)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilvfl~g~~~i~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 408 (764)
....++||+..+..+..+..+|++|
T Consensus 312 ---------------------------lk~K~iVF~SscKqvkf~~e~F~rl---------------------------- 336 (758)
T KOG0343|consen 312 ---------------------------LKKKSIVFLSSCKQVKFLYEAFCRL---------------------------- 336 (758)
T ss_pred ---------------------------cccceEEEEehhhHHHHHHHHHHhc----------------------------
Confidence 0123567777777777777777766
Q ss_pred CCCCCCCCCCCCCccccccCcccCCCCCeEEEecCCCCCHHHHHhhhccCCCCceEEEEecCcccccCCCCCeEEEEeCC
Q 038192 409 TPTPEQCPELSSPDVEKMGDNKRAGVGALCVLPLYAMLPAAAQLRVFEDVKEGERLVVVSTNVAETSLTIPGIKYVVDTG 488 (764)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~pLHs~l~~~eQ~~vf~~~~~g~rKVIlsTNIAEtSITIpdV~~VID~G 488 (764)
.+++.++.|||.|++..|..||..|-....-|++||+||.||+++|.|.+||
T Consensus 337 -------------------------rpg~~l~~L~G~~~Q~~R~ev~~~F~~~~~~vLF~TDv~aRGLDFpaVdwVi--- 388 (758)
T KOG0343|consen 337 -------------------------RPGIPLLALHGTMSQKKRIEVYKKFVRKRAVVLFCTDVAARGLDFPAVDWVI--- 388 (758)
T ss_pred -------------------------CCCCceeeeccchhHHHHHHHHHHHHHhcceEEEeehhhhccCCCcccceEE---
Confidence 1467899999999999999999999877778999999999999999999999
Q ss_pred cccceeeccCCCccccceeeccHHhHHHhccccCCCCC-CEEEEccCHHHh
Q 038192 489 REKVKKYNSANGIESYEIQWISKASAAQRAGRAGRTAP-GHCYRLYSSAVF 538 (764)
Q Consensus 489 ~~K~~~yd~~~~~~~l~~~~iSkasa~QR~GRAGR~~~-G~cyrLys~~~~ 538 (764)
.||.+.++ +.|.||+||+.|... |.|+-+.++..-
T Consensus 389 -----Q~DCPedv----------~tYIHRvGRtAR~~~~G~sll~L~psEe 424 (758)
T KOG0343|consen 389 -----QVDCPEDV----------DTYIHRVGRTARYKERGESLLMLTPSEE 424 (758)
T ss_pred -----EecCchhH----------HHHHHHhhhhhcccCCCceEEEEcchhH
Confidence 47866555 455699999999987 999988887653
No 34
>KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification]
Probab=99.95 E-value=4.5e-27 Score=253.33 Aligned_cols=305 Identities=22% Similarity=0.245 Sum_probs=201.8
Q ss_pred hHHHHHHHHHcCCeEEEEecCCCCccccHHHHHHHhccCCCCCCCCCceEEEecccHHHHHHHHHHHHHHhCC-CCCCEe
Q 038192 39 MEQEIMEAVNDNSAVIICGETGCGKTTQVPQFLFEAGFGSNRCSSRSGRIGVTQPRRVAVLATAKRVAFELGL-HLGKEV 117 (764)
Q Consensus 39 ~~~~Il~~l~~~~vviI~GeTGSGKTTqvPq~Lle~~~~~~~~~~~~~~Ii~tQPRRiaAisvA~RVa~E~g~-~lG~~V 117 (764)
.++..+.-+..++.+++.+.||||||..+-..-.|..+...........++|..|||+.|+|.+. +|+++-. .-+..|
T Consensus 108 VQ~~ti~pll~gkDvl~~AKTGtGKTlAFLiPaie~l~k~~~~~r~~~~vlIi~PTRELA~Q~~~-eak~Ll~~h~~~~v 186 (543)
T KOG0342|consen 108 VQQKTIPPLLEGKDVLAAAKTGTGKTLAFLLPAIELLRKLKFKPRNGTGVLIICPTRELAMQIFA-EAKELLKYHESITV 186 (543)
T ss_pred HHHhhcCccCCCccceeeeccCCCceeeehhHHHHHHHhcccCCCCCeeEEEecccHHHHHHHHH-HHHHHHhhCCCcce
Confidence 35555566666778999999999999986555555443332222234678899999999999988 5555533 337889
Q ss_pred eEEeccCccc------CCCceEEEEchHHHHHHHHH------------HHHHHHHHHhhccccCCcc---C-CCCceEEE
Q 038192 118 GFQVRHDKKI------GDSCSIKFMTDGILLRELKA------------LYEKQQQLLRSGQCIEPKD---R-VFPLKLIL 175 (764)
Q Consensus 118 GY~ir~e~~~------s~~t~I~f~T~GiLLr~l~~------------i~de~~~~l~~~~~~~~~~---~-~~~lKlIL 175 (764)
|+.|.+.+.. ...++|+++|||+|+++|+. |+||+++.++.||...+.. . ....|..|
T Consensus 187 ~~viGG~~~~~e~~kl~k~~niliATPGRLlDHlqNt~~f~~r~~k~lvlDEADrlLd~GF~~di~~Ii~~lpk~rqt~L 266 (543)
T KOG0342|consen 187 GIVIGGNNFSVEADKLVKGCNILIATPGRLLDHLQNTSGFLFRNLKCLVLDEADRLLDIGFEEDVEQIIKILPKQRQTLL 266 (543)
T ss_pred EEEeCCccchHHHHHhhccccEEEeCCchHHhHhhcCCcchhhccceeEeecchhhhhcccHHHHHHHHHhccccceeeE
Confidence 9999887753 35899999999999999964 6799999999998654322 1 24568999
Q ss_pred eecccchh--hhccccCCCCCCCeeeeCCcccceeEEecCCCchhhHHHHHHHHHHHHhhcCCCCCeEEecCCHHHHHHH
Q 038192 176 MSATLRVE--DFISGGRLFRNPPIIEVPTRQFPVTVHFSKRTEIVDYIGQAYKKVMSIHKRLPQGGILVFVTGQREVEYL 253 (764)
Q Consensus 176 MSATl~~~--~f~~~~~~f~~~~vi~i~gr~~pV~~~y~~~~~~~d~l~~~~~~v~~i~~~~~~g~ilvF~~g~~~ie~l 253 (764)
+|||+..+ ..+.. .+-.++..|.+....-+.. |...++|- |-+++....-.+
T Consensus 267 FSAT~~~kV~~l~~~-~L~~d~~~v~~~d~~~~~T-----------------------he~l~Qgy--vv~~~~~~f~ll 320 (543)
T KOG0342|consen 267 FSATQPSKVKDLARG-ALKRDPVFVNVDDGGERET-----------------------HERLEQGY--VVAPSDSRFSLL 320 (543)
T ss_pred eeCCCcHHHHHHHHH-hhcCCceEeecCCCCCcch-----------------------hhcccceE--EeccccchHHHH
Confidence 99999543 33210 0111233333322111111 11111111 112222222222
Q ss_pred HHHHHHHHHHhhhhccccccCCccccCCCCCccccchhHHhHHHHHhhcCcccccccccCCCCCcccccCccccccccCc
Q 038192 254 CSKLRKASKQLLVNSSKENKGNQVVADSEPNATKDINMKEINEAFEIQGYSTEQQTDRFSSYDEDQFDIDDNELDALSDS 333 (764)
Q Consensus 254 ~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (764)
...|++..
T Consensus 321 ~~~LKk~~------------------------------------------------------------------------ 328 (543)
T KOG0342|consen 321 YTFLKKNI------------------------------------------------------------------------ 328 (543)
T ss_pred HHHHHHhc------------------------------------------------------------------------
Confidence 22332200
Q ss_pred cchhhhhhccchhhhhhhcCCCCCCCCcccccccchhhhhHHHHHHhhcCCCCCCCccccCCCCCCCCcCCCCCCCCCCC
Q 038192 334 ETESETEILGEDEKLVEQKCPMDGDDPVDVLKENWSLGSLKLAFEVLSGKNASGPSSQMKLSTPAIPEQCTELPPTPTPE 413 (764)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~~~ilvfl~g~~~i~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 413 (764)
..-.|+||++.+..+..+...++.
T Consensus 329 ----------------------~~~KiiVF~sT~~~vk~~~~lL~~---------------------------------- 352 (543)
T KOG0342|consen 329 ----------------------KRYKIIVFFSTCMSVKFHAELLNY---------------------------------- 352 (543)
T ss_pred ----------------------CCceEEEEechhhHHHHHHHHHhh----------------------------------
Confidence 001255666665554444433322
Q ss_pred CCCCCCCCccccccCcccCCCCCeEEEecCCCCCHHHHHhhhccCCCCceEEEEecCcccccCCCCCeEEEEeCCcccce
Q 038192 414 QCPELSSPDVEKMGDNKRAGVGALCVLPLYAMLPAAAQLRVFEDVKEGERLVVVSTNVAETSLTIPGIKYVVDTGREKVK 493 (764)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~~~~~~~~i~pLHs~l~~~eQ~~vf~~~~~g~rKVIlsTNIAEtSITIpdV~~VID~G~~K~~ 493 (764)
-.+.|+-+||++++..|..+|..|.+...-|+||||||+||++||+|.+||
T Consensus 353 ---------------------~dlpv~eiHgk~~Q~kRT~~~~~F~kaesgIL~cTDVaARGlD~P~V~~Vv-------- 403 (543)
T KOG0342|consen 353 ---------------------IDLPVLEIHGKQKQNKRTSTFFEFCKAESGILVCTDVAARGLDIPDVDWVV-------- 403 (543)
T ss_pred ---------------------cCCchhhhhcCCcccccchHHHHHhhcccceEEecchhhccCCCCCceEEE--------
Confidence 135688899999999999999999999999999999999999999999999
Q ss_pred eeccCCCccccceeeccHHhHHHhccccCCCCC-CEEEEccCHHH
Q 038192 494 KYNSANGIESYEIQWISKASAAQRAGRAGRTAP-GHCYRLYSSAV 537 (764)
Q Consensus 494 ~yd~~~~~~~l~~~~iSkasa~QR~GRAGR~~~-G~cyrLys~~~ 537 (764)
.||++.+ ..+|+||.||+||.+. |..+-+..+.+
T Consensus 404 Q~~~P~d----------~~~YIHRvGRTaR~gk~G~alL~l~p~E 438 (543)
T KOG0342|consen 404 QYDPPSD----------PEQYIHRVGRTAREGKEGKALLLLAPWE 438 (543)
T ss_pred EeCCCCC----------HHHHHHHhccccccCCCceEEEEeChhH
Confidence 4887765 5677799999999887 99887776643
No 35
>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.94 E-value=5e-27 Score=252.67 Aligned_cols=307 Identities=22% Similarity=0.285 Sum_probs=202.3
Q ss_pred CCchhhHHHHHHHHHcCCeEEEEecCCCCccccHHHHHHHhccCCCCCCCCCceEEEecccHHHHHHHHHHHHHHhCCCC
Q 038192 34 LPIVMMEQEIMEAVNDNSAVIICGETGCGKTTQVPQFLFEAGFGSNRCSSRSGRIGVTQPRRVAVLATAKRVAFELGLHL 113 (764)
Q Consensus 34 LPi~~~~~~Il~~l~~~~vviI~GeTGSGKTTqvPq~Lle~~~~~~~~~~~~~~Ii~tQPRRiaAisvA~RVa~E~g~~l 113 (764)
-|...+..-|.-++...+ ++-|+.||||||..+-.++||..+-.++. ....+++|..|+|.+|+||.. |...+..-.
T Consensus 203 ~PTpIQ~a~IPvallgkD-Ica~A~TGsGKTAAF~lPiLERLlYrPk~-~~~TRVLVL~PTRELaiQv~s-V~~qlaqFt 279 (691)
T KOG0338|consen 203 KPTPIQVATIPVALLGKD-ICACAATGSGKTAAFALPILERLLYRPKK-VAATRVLVLVPTRELAIQVHS-VTKQLAQFT 279 (691)
T ss_pred CCCchhhhcccHHhhcch-hhheecccCCchhhhHHHHHHHHhcCccc-CcceeEEEEeccHHHHHHHHH-HHHHHHhhc
Confidence 477778888888888887 67899999999999999999976543331 234689999999999998765 444443333
Q ss_pred CCEeeEEeccCc------ccCCCceEEEEchHHHHHHHHH------------HHHHHHHHHhhccccCC---ccC-CCCc
Q 038192 114 GKEVGFQVRHDK------KIGDSCSIKFMTDGILLRELKA------------LYEKQQQLLRSGQCIEP---KDR-VFPL 171 (764)
Q Consensus 114 G~~VGY~ir~e~------~~s~~t~I~f~T~GiLLr~l~~------------i~de~~~~l~~~~~~~~---~~~-~~~l 171 (764)
--.||..|++=+ .......|+++|||+|+++|+. |+||+++||..||.-.+ .+. ..+.
T Consensus 280 ~I~~~L~vGGL~lk~QE~~LRs~PDIVIATPGRlIDHlrNs~sf~ldsiEVLvlDEADRMLeegFademnEii~lcpk~R 359 (691)
T KOG0338|consen 280 DITVGLAVGGLDLKAQEAVLRSRPDIVIATPGRLIDHLRNSPSFNLDSIEVLVLDEADRMLEEGFADEMNEIIRLCPKNR 359 (691)
T ss_pred cceeeeeecCccHHHHHHHHhhCCCEEEecchhHHHHhccCCCccccceeEEEechHHHHHHHHHHHHHHHHHHhccccc
Confidence 345555554433 3456889999999999999953 67999999999874322 122 2467
Q ss_pred eEEEeeccc--chhhhccccCCCCCCCeeeeCCcccceeEEecCCCchhhHHHHHHHHHHHHhhcCCCCCeEEecCCHHH
Q 038192 172 KLILMSATL--RVEDFISGGRLFRNPPIIEVPTRQFPVTVHFSKRTEIVDYIGQAYKKVMSIHKRLPQGGILVFVTGQRE 249 (764)
Q Consensus 172 KlILMSATl--~~~~f~~~~~~f~~~~vi~i~gr~~pV~~~y~~~~~~~d~l~~~~~~v~~i~~~~~~g~ilvF~~g~~~ 249 (764)
+.+|+|||| .++.+.+ --++ -||.++-.+.....-.+.+.|-+ |... ..| .++
T Consensus 360 QTmLFSATMteeVkdL~s--lSL~-----------kPvrifvd~~~~~a~~LtQEFiR---IR~~-re~--------dRe 414 (691)
T KOG0338|consen 360 QTMLFSATMTEEVKDLAS--LSLN-----------KPVRIFVDPNKDTAPKLTQEFIR---IRPK-REG--------DRE 414 (691)
T ss_pred cceeehhhhHHHHHHHHH--hhcC-----------CCeEEEeCCccccchhhhHHHhe---eccc-ccc--------ccH
Confidence 899999999 4445543 1122 35555443322111111111100 0000 000 000
Q ss_pred HHHHHHHHHHHHHHhhhhccccccCCccccCCCCCccccchhHHhHHHHHhhcCcccccccccCCCCCcccccCcccccc
Q 038192 250 VEYLCSKLRKASKQLLVNSSKENKGNQVVADSEPNATKDINMKEINEAFEIQGYSTEQQTDRFSSYDEDQFDIDDNELDA 329 (764)
Q Consensus 250 ie~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~ 329 (764)
. .++..+
T Consensus 415 a-~l~~l~------------------------------------------------------------------------ 421 (691)
T KOG0338|consen 415 A-MLASLI------------------------------------------------------------------------ 421 (691)
T ss_pred H-HHHHHH------------------------------------------------------------------------
Confidence 0 000000
Q ss_pred ccCccchhhhhhccchhhhhhhcCCCCCCCCcccccccchhhhhHHHHHHhhcCCCCCCCccccCCCCCCCCcCCCCCCC
Q 038192 330 LSDSETESETEILGEDEKLVEQKCPMDGDDPVDVLKENWSLGSLKLAFEVLSGKNASGPSSQMKLSTPAIPEQCTELPPT 409 (764)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilvfl~g~~~i~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 409 (764)
+......++||......-..|+-.+..|
T Consensus 422 -----------------------~rtf~~~~ivFv~tKk~AHRl~IllGLl----------------------------- 449 (691)
T KOG0338|consen 422 -----------------------TRTFQDRTIVFVRTKKQAHRLRILLGLL----------------------------- 449 (691)
T ss_pred -----------------------HHhcccceEEEEehHHHHHHHHHHHHHh-----------------------------
Confidence 0001223444444444333333333222
Q ss_pred CCCCCCCCCCCCccccccCcccCCCCCeEEEecCCCCCHHHHHhhhccCCCCceEEEEecCcccccCCCCCeEEEEeCCc
Q 038192 410 PTPEQCPELSSPDVEKMGDNKRAGVGALCVLPLYAMLPAAAQLRVFEDVKEGERLVVVSTNVAETSLTIPGIKYVVDTGR 489 (764)
Q Consensus 410 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~pLHs~l~~~eQ~~vf~~~~~g~rKVIlsTNIAEtSITIpdV~~VID~G~ 489 (764)
++.+--|||+|++.+|...++.|+++...|+|||++|.+||+|++|..|||
T Consensus 450 --------------------------gl~agElHGsLtQ~QRlesL~kFk~~eidvLiaTDvAsRGLDI~gV~tVIN--- 500 (691)
T KOG0338|consen 450 --------------------------GLKAGELHGSLTQEQRLESLEKFKKEEIDVLIATDVASRGLDIEGVQTVIN--- 500 (691)
T ss_pred --------------------------hchhhhhcccccHHHHHHHHHHHHhccCCEEEEechhhccCCccceeEEEe---
Confidence 466788999999999999999999999999999999999999999999998
Q ss_pred ccceeeccCCCccccceeeccHHhHHHhccccCCCCC-CEEEEccCHHH
Q 038192 490 EKVKKYNSANGIESYEIQWISKASAAQRAGRAGRTAP-GHCYRLYSSAV 537 (764)
Q Consensus 490 ~K~~~yd~~~~~~~l~~~~iSkasa~QR~GRAGR~~~-G~cyrLys~~~ 537 (764)
|+ .|.|...|.||.||+.|.|. |....|..+..
T Consensus 501 -----y~----------mP~t~e~Y~HRVGRTARAGRaGrsVtlvgE~d 534 (691)
T KOG0338|consen 501 -----YA----------MPKTIEHYLHRVGRTARAGRAGRSVTLVGESD 534 (691)
T ss_pred -----cc----------CchhHHHHHHHhhhhhhcccCcceEEEecccc
Confidence 54 45667778899999999987 99999998864
No 36
>KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.94 E-value=3.4e-26 Score=238.69 Aligned_cols=289 Identities=18% Similarity=0.227 Sum_probs=221.9
Q ss_pred CCeEEEEecCCCCccccHHHHHHHhccCCCCCCCCCceEEEecccHHHHHHHHHHHHHHhCCCCCCEeeEEeccCccc-C
Q 038192 50 NSAVIICGETGCGKTTQVPQFLFEAGFGSNRCSSRSGRIGVTQPRRVAVLATAKRVAFELGLHLGKEVGFQVRHDKKI-G 128 (764)
Q Consensus 50 ~~vviI~GeTGSGKTTqvPq~Lle~~~~~~~~~~~~~~Ii~tQPRRiaAisvA~RVa~E~g~~lG~~VGY~ir~e~~~-s 128 (764)
.+.+|.++..|+|||+.+..-+|-.--... .....+|.-|+|.+|.+.-+ |-.|||...+-+.-|.||..... +
T Consensus 129 p~nlIaQsqsGtGKTaaFvL~MLsrvd~~~----~~PQ~iCLaPtrELA~Q~~e-Vv~eMGKf~~ita~yair~sk~~rG 203 (477)
T KOG0332|consen 129 PQNLIAQSQSGTGKTAAFVLTMLSRVDPDV----VVPQCICLAPTRELAPQTGE-VVEEMGKFTELTASYAIRGSKAKRG 203 (477)
T ss_pred chhhhhhhcCCCchhHHHHHHHHHhcCccc----cCCCceeeCchHHHHHHHHH-HHHHhcCceeeeEEEEecCcccccC
Confidence 467899999999999998887775432211 12467899999999999877 88999998888999999987322 1
Q ss_pred --CCceEEEEchHHHHHHHHH------------HHHHHHHHHhhc-c---ccCCccCCC-CceEEEeeccc--chhhhcc
Q 038192 129 --DSCSIKFMTDGILLRELKA------------LYEKQQQLLRSG-Q---CIEPKDRVF-PLKLILMSATL--RVEDFIS 187 (764)
Q Consensus 129 --~~t~I~f~T~GiLLr~l~~------------i~de~~~~l~~~-~---~~~~~~~~~-~lKlILMSATl--~~~~f~~ 187 (764)
=.-+|++.|+|.+++++.. ++||++.|+... | +..+....| +.++||+|||. .+..|+.
T Consensus 204 ~~i~eqIviGTPGtv~Dlm~klk~id~~kikvfVlDEAD~Mi~tqG~~D~S~rI~~~lP~~~QllLFSATf~e~V~~Fa~ 283 (477)
T KOG0332|consen 204 NKLTEQIVIGTPGTVLDLMLKLKCIDLEKIKVFVLDEADVMIDTQGFQDQSIRIMRSLPRNQQLLLFSATFVEKVAAFAL 283 (477)
T ss_pred CcchhheeeCCCccHHHHHHHHHhhChhhceEEEecchhhhhhcccccccchhhhhhcCCcceEEeeechhHHHHHHHHH
Confidence 1357999999999998854 468999988753 3 333333334 89999999999 4556765
Q ss_pred ccCCCCCCCeeeeCCc---ccceeEEecCCCchhhHHHHHHHHHHHHhhcCCCCCeEEecCCHHHHHHHHHHHHHHHHHh
Q 038192 188 GGRLFRNPPIIEVPTR---QFPVTVHFSKRTEIVDYIGQAYKKVMSIHKRLPQGGILVFVTGQREVEYLCSKLRKASKQL 264 (764)
Q Consensus 188 ~~~~f~~~~vi~i~gr---~~pV~~~y~~~~~~~d~l~~~~~~v~~i~~~~~~g~ilvF~~g~~~ie~l~~~L~~~~~~~ 264 (764)
+...++.++.+..+ .++|+.+|.....-.+ .+..+..+.....-|+.++|+..+..+.|++..|+.
T Consensus 284 --kivpn~n~i~Lk~eel~L~~IkQlyv~C~~~~~----K~~~l~~lyg~~tigqsiIFc~tk~ta~~l~~~m~~----- 352 (477)
T KOG0332|consen 284 --KIVPNANVIILKREELALDNIKQLYVLCACRDD----KYQALVNLYGLLTIGQSIIFCHTKATAMWLYEEMRA----- 352 (477)
T ss_pred --HhcCCCceeeeehhhccccchhhheeeccchhh----HHHHHHHHHhhhhhhheEEEEeehhhHHHHHHHHHh-----
Confidence 67788888777654 4788888876543122 334455666666778899999999988888776643
Q ss_pred hhhccccccCCccccCCCCCccccchhHHhHHHHHhhcCcccccccccCCCCCcccccCccccccccCccchhhhhhccc
Q 038192 265 LVNSSKENKGNQVVADSEPNATKDINMKEINEAFEIQGYSTEQQTDRFSSYDEDQFDIDDNELDALSDSETESETEILGE 344 (764)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (764)
T Consensus 353 -------------------------------------------------------------------------------- 352 (477)
T KOG0332|consen 353 -------------------------------------------------------------------------------- 352 (477)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhhhhhcCCCCCCCCcccccccchhhhhHHHHHHhhcCCCCCCCccccCCCCCCCCcCCCCCCCCCCCCCCCCCCCccc
Q 038192 345 DEKLVEQKCPMDGDDPVDVLKENWSLGSLKLAFEVLSGKNASGPSSQMKLSTPAIPEQCTELPPTPTPEQCPELSSPDVE 424 (764)
Q Consensus 345 ~~~~~~~~~~~~~~~ilvfl~g~~~i~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 424 (764)
T Consensus 353 -------------------------------------------------------------------------------- 352 (477)
T KOG0332|consen 353 -------------------------------------------------------------------------------- 352 (477)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccCcccCCCCCeEEEecCCCCCHHHHHhhhccCCCCceEEEEecCcccccCCCCCeEEEEeCCcccceeeccCCCcccc
Q 038192 425 KMGDNKRAGVGALCVLPLYAMLPAAAQLRVFEDVKEGERLVVVSTNVAETSLTIPGIKYVVDTGREKVKKYNSANGIESY 504 (764)
Q Consensus 425 ~~~~~~~~~~~~~~i~pLHs~l~~~eQ~~vf~~~~~g~rKVIlsTNIAEtSITIpdV~~VID~G~~K~~~yd~~~~~~~l 504 (764)
.+..|-.|||.|..++|.++.+.|+.|.-||+++||+..|||+++.|..|||+.+ +.....
T Consensus 353 ----------~Gh~V~~l~G~l~~~~R~~ii~~Fr~g~~kVLitTnV~ARGiDv~qVs~VvNydl--------P~~~~~- 413 (477)
T KOG0332|consen 353 ----------EGHQVSLLHGDLTVEQRAAIIDRFREGKEKVLITTNVCARGIDVAQVSVVVNYDL--------PVKYTG- 413 (477)
T ss_pred ----------cCceeEEeeccchhHHHHHHHHHHhcCcceEEEEechhhcccccceEEEEEecCC--------ccccCC-
Confidence 1245788999999999999999999999999999999999999999999999544 332211
Q ss_pred ceeeccHHhHHHhccccCCCCC-CEEEEccCHH
Q 038192 505 EIQWISKASAAQRAGRAGRTAP-GHCYRLYSSA 536 (764)
Q Consensus 505 ~~~~iSkasa~QR~GRAGR~~~-G~cyrLys~~ 536 (764)
--.-+.|.||.||+||.|. |..|.|....
T Consensus 414 ---~pD~etYlHRiGRtGRFGkkG~a~n~v~~~ 443 (477)
T KOG0332|consen 414 ---EPDYETYLHRIGRTGRFGKKGLAINLVDDK 443 (477)
T ss_pred ---CCCHHHHHHHhcccccccccceEEEeeccc
Confidence 1445678899999999998 9999987654
No 37
>PRK00254 ski2-like helicase; Provisional
Probab=99.94 E-value=4.6e-25 Score=264.28 Aligned_cols=422 Identities=17% Similarity=0.165 Sum_probs=254.5
Q ss_pred hhhHHHHHH-HHHcCCeEEEEecCCCCccccHHHHHHHhccCCCCCCCCCceEEEecccHHHHHHHHHHHHHHhCCCCCC
Q 038192 37 VMMEQEIME-AVNDNSAVIICGETGCGKTTQVPQFLFEAGFGSNRCSSRSGRIGVTQPRRVAVLATAKRVAFELGLHLGK 115 (764)
Q Consensus 37 ~~~~~~Il~-~l~~~~vviI~GeTGSGKTTqvPq~Lle~~~~~~~~~~~~~~Ii~tQPRRiaAisvA~RVa~E~g~~lG~ 115 (764)
+.+|.+.+. .+.+++.++++++||||||......+++.....+ +++++..|+|..|.+..+++.. + ..+|.
T Consensus 25 ~~~Q~~ai~~~~~~g~nvlv~apTGsGKT~~~~l~il~~l~~~~------~~~l~l~P~~aLa~q~~~~~~~-~-~~~g~ 96 (720)
T PRK00254 25 YPPQAEALKSGVLEGKNLVLAIPTASGKTLVAEIVMVNKLLREG------GKAVYLVPLKALAEEKYREFKD-W-EKLGL 96 (720)
T ss_pred CHHHHHHHHHHHhCCCcEEEECCCCcHHHHHHHHHHHHHHHhcC------CeEEEEeChHHHHHHHHHHHHH-H-hhcCC
Confidence 455666665 4788888999999999999987777776543322 5788999999999999987764 3 23566
Q ss_pred EeeEEeccCc---ccCCCceEEEEchHHHHHHHH-------H----HHHHHHHHHhhcc--cc--CCccCCCCceEEEee
Q 038192 116 EVGFQVRHDK---KIGDSCSIKFMTDGILLRELK-------A----LYEKQQQLLRSGQ--CI--EPKDRVFPLKLILMS 177 (764)
Q Consensus 116 ~VGY~ir~e~---~~s~~t~I~f~T~GiLLr~l~-------~----i~de~~~~l~~~~--~~--~~~~~~~~lKlILMS 177 (764)
.|+.-...-+ ..-.+++|+++|++.+...+. . |+||+|.+...+. .+ .+.....+.|+|+||
T Consensus 97 ~v~~~~Gd~~~~~~~~~~~~IiV~Tpe~~~~ll~~~~~~l~~l~lvViDE~H~l~~~~rg~~le~il~~l~~~~qiI~lS 176 (720)
T PRK00254 97 RVAMTTGDYDSTDEWLGKYDIIIATAEKFDSLLRHGSSWIKDVKLVVADEIHLIGSYDRGATLEMILTHMLGRAQILGLS 176 (720)
T ss_pred EEEEEeCCCCCchhhhccCCEEEEcHHHHHHHHhCCchhhhcCCEEEEcCcCccCCccchHHHHHHHHhcCcCCcEEEEE
Confidence 6654332211 112357899999999876653 1 5688876432211 00 011123568999999
Q ss_pred ccc-chhhhccccCCCCCCCeeeeCCccccee--EEec-----CCCchhhHHHHHHHHHHHHhhcCCCCCeEEecCCHHH
Q 038192 178 ATL-RVEDFISGGRLFRNPPIIEVPTRQFPVT--VHFS-----KRTEIVDYIGQAYKKVMSIHKRLPQGGILVFVTGQRE 249 (764)
Q Consensus 178 ATl-~~~~f~~~~~~f~~~~vi~i~gr~~pV~--~~y~-----~~~~~~d~l~~~~~~v~~i~~~~~~g~ilvF~~g~~~ 249 (764)
||+ +++.+. .+++. +.+....|..|.. +++. .+.....+.......+.+... ..+.+|||+++++.
T Consensus 177 ATl~n~~~la---~wl~~-~~~~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~--~~~~vLVF~~sr~~ 250 (720)
T PRK00254 177 ATVGNAEELA---EWLNA-ELVVSDWRPVKLRKGVFYQGFLFWEDGKIERFPNSWESLVYDAVK--KGKGALVFVNTRRS 250 (720)
T ss_pred ccCCCHHHHH---HHhCC-ccccCCCCCCcceeeEecCCeeeccCcchhcchHHHHHHHHHHHH--hCCCEEEEEcChHH
Confidence 999 788887 46653 2233333433332 1111 111001111111112222221 35679999999999
Q ss_pred HHHHHHHHHHHHHHhhhhccccccCCccccCCCCCccccchhHHhHHHHHhhcCcccccccccCCCCCcccccCcccccc
Q 038192 250 VEYLCSKLRKASKQLLVNSSKENKGNQVVADSEPNATKDINMKEINEAFEIQGYSTEQQTDRFSSYDEDQFDIDDNELDA 329 (764)
Q Consensus 250 ie~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~ 329 (764)
++.++..+.+....... ..+..++.+...
T Consensus 251 ~~~~a~~l~~~~~~~~~---------------------~~~~~~~~~~~~------------------------------ 279 (720)
T PRK00254 251 AEKEALELAKKIKRFLT---------------------KPELRALKELAD------------------------------ 279 (720)
T ss_pred HHHHHHHHHHHHHHhcC---------------------chhHHHHHHHHH------------------------------
Confidence 99888777543211100 000000000000
Q ss_pred ccCccchhhhhhccchhhhhhhcCCCCCCCCcccccccchhhhhHHHHHHhhcCCCCCCCccccCCCCCCCCcCCCCCCC
Q 038192 330 LSDSETESETEILGEDEKLVEQKCPMDGDDPVDVLKENWSLGSLKLAFEVLSGKNASGPSSQMKLSTPAIPEQCTELPPT 409 (764)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilvfl~g~~~i~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 409 (764)
.+ . . +. ....|...
T Consensus 280 -----------------~~-~---~-----------~~-~~~~L~~~--------------------------------- 293 (720)
T PRK00254 280 -----------------SL-E---E-----------NP-TNEKLKKA--------------------------------- 293 (720)
T ss_pred -----------------HH-h---c-----------CC-CcHHHHHH---------------------------------
Confidence 00 0 0 00 00000000
Q ss_pred CCCCCCCCCCCCccccccCcccCCCCCeEEEecCCCCCHHHHHhhhccCCCCceEEEEecCcccccCCCCCeEEEEeCCc
Q 038192 410 PTPEQCPELSSPDVEKMGDNKRAGVGALCVLPLYAMLPAAAQLRVFEDVKEGERLVVVSTNVAETSLTIPGIKYVVDTGR 489 (764)
Q Consensus 410 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~pLHs~l~~~eQ~~vf~~~~~g~rKVIlsTNIAEtSITIpdV~~VID~G~ 489 (764)
-...|..+||+|++++|..+.+.|++|..+|++||+.++.||+||++.+||...
T Consensus 294 -------------------------l~~gv~~hHagl~~~eR~~ve~~F~~G~i~VLvaT~tLa~Gvnipa~~vVI~~~- 347 (720)
T PRK00254 294 -------------------------LRGGVAFHHAGLGRTERVLIEDAFREGLIKVITATPTLSAGINLPAFRVIIRDT- 347 (720)
T ss_pred -------------------------HhhCEEEeCCCCCHHHHHHHHHHHHCCCCeEEEeCcHHhhhcCCCceEEEECCc-
Confidence 123488899999999999999999999999999999999999999999999543
Q ss_pred ccceeeccCCCccccceeeccHHhHHHhccccCCCC---CCEEEEccCHHH----hcccC--------CCCCCCcccccC
Q 038192 490 EKVKKYNSANGIESYEIQWISKASAAQRAGRAGRTA---PGHCYRLYSSAV----FNNIL--------PDFSCAEISKVP 554 (764)
Q Consensus 490 ~K~~~yd~~~~~~~l~~~~iSkasa~QR~GRAGR~~---~G~cyrLys~~~----~~~~l--------~~~~~PEI~r~~ 554 (764)
..|+ ..+ ..+++.+++.||+|||||-+ .|.|+-+.+... |+..+ ...+.++.++.
T Consensus 348 ---~~~~-~~~-----~~~~~~~~~~Qm~GRAGR~~~d~~G~~ii~~~~~~~~~~~~~~~~~~pe~l~s~l~~es~l~~- 417 (720)
T PRK00254 348 ---KRYS-NFG-----WEDIPVLEIQQMMGRAGRPKYDEVGEAIIVATTEEPSKLMERYIFGKPEKLFSMLSNESAFRS- 417 (720)
T ss_pred ---eEcC-CCC-----ceeCCHHHHHHhhhccCCCCcCCCceEEEEecCcchHHHHHHHHhCCchhhhccCCchHHHHH-
Confidence 2354 112 23566789999999999964 499998876422 33222 11222233332
Q ss_pred hhhHHHHHHHcC-CCCCC--------CCCCCCCCCH----HHHHHHHHHHHHcccccCC----CCccHHHHHHhcCCCCh
Q 038192 555 VDGVVLLMKSMN-IDKVS--------NFPFPTPPEV----TALVEAERCLKALEALDSN----GRLTALGKAMAHYPMSP 617 (764)
Q Consensus 555 L~~~~L~lk~l~-~~~~~--------~f~~~~pP~~----~~i~~ai~~L~~lgAld~~----~~LT~LG~~la~LPvdp 617 (764)
.+|...+.+ +.+.. .|.+...|+. +.+..++..|..-|.++.+ -..|++|+.++.++++|
T Consensus 418 ---~ll~~i~~~~~~~~~~~~~~l~~Tf~~~~~~~~~~~~~~v~~~l~~L~~~~~i~~~~~~~~~~t~lG~~~s~~~i~~ 494 (720)
T PRK00254 418 ---QVLALITNFGVSNFKELVNFLERTFYAHQRKDLYSLEEKAKEIVYFLLENEFIDIDLEDRFIPLPLGIRTSQLYIDP 494 (720)
T ss_pred ---HHHHHHHhCCCCCHHHHHHHHHhCHHHHhhcChHhHHHHHHHHHHHHHHCCCeEEcCCCCEeeChHHHHHHHHhCCH
Confidence 333333333 22211 2223444553 4567788899999988643 35799999999999999
Q ss_pred HHHHHHHHHHh
Q 038192 618 RHSRMLLTLIQ 628 (764)
Q Consensus 618 ~lgkmLl~~~~ 628 (764)
.-++++..++.
T Consensus 495 ~t~~~~~~~l~ 505 (720)
T PRK00254 495 LTAKKFKDAFP 505 (720)
T ss_pred HHHHHHHHHHH
Confidence 99999887653
No 38
>KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.93 E-value=8.1e-25 Score=236.95 Aligned_cols=147 Identities=22% Similarity=0.198 Sum_probs=105.0
Q ss_pred cCCCchhhHHHHHHHHHcCCeEEEEecCCCCccccHHHHHHHhccC--CCCCCCCCceEEEecccHHHHHHHHHHHHHHh
Q 038192 32 KDLPIVMMEQEIMEAVNDNSAVIICGETGCGKTTQVPQFLFEAGFG--SNRCSSRSGRIGVTQPRRVAVLATAKRVAFEL 109 (764)
Q Consensus 32 ~~LPi~~~~~~Il~~l~~~~vviI~GeTGSGKTTqvPq~Lle~~~~--~~~~~~~~~~Ii~tQPRRiaAisvA~RVa~E~ 109 (764)
-+=|...+++.|...|+.++ ++|-+.||||||...-..|.+.... .+-.-....-.+|..|+|.+|.++.+-+.+..
T Consensus 157 i~~pTsVQkq~IP~lL~grD-~lV~aQTGSGKTLAYllPiVq~Lq~m~~ki~Rs~G~~ALVivPTREL~~Q~y~~~qKLl 235 (708)
T KOG0348|consen 157 ISAPTSVQKQAIPVLLEGRD-ALVRAQTGSGKTLAYLLPIVQSLQAMEPKIQRSDGPYALVIVPTRELALQIYETVQKLL 235 (708)
T ss_pred cCccchHhhcchhhhhcCcc-eEEEcCCCCcccHHHHHHHHHHHHhcCccccccCCceEEEEechHHHHHHHHHHHHHHh
Confidence 34588888888888888655 7999999999998865555543211 11000012467899999999999999555544
Q ss_pred CCCCCCE-eeEEeccCcccC------CCceEEEEchHHHHHHHHH------------HHHHHHHHHhhccccCCc-----
Q 038192 110 GLHLGKE-VGFQVRHDKKIG------DSCSIKFMTDGILLRELKA------------LYEKQQQLLRSGQCIEPK----- 165 (764)
Q Consensus 110 g~~lG~~-VGY~ir~e~~~s------~~t~I~f~T~GiLLr~l~~------------i~de~~~~l~~~~~~~~~----- 165 (764)
. +.--. -||-+++|.+.+ ++.+|+++|||+|+++|+. |+||+++.+.+||-..+.
T Consensus 236 ~-~~hWIVPg~lmGGEkkKSEKARLRKGiNILIgTPGRLvDHLknT~~i~~s~LRwlVlDEaDrlleLGfekdit~Il~~ 314 (708)
T KOG0348|consen 236 K-PFHWIVPGVLMGGEKKKSEKARLRKGINILIGTPGRLVDHLKNTKSIKFSRLRWLVLDEADRLLELGFEKDITQILKA 314 (708)
T ss_pred c-CceEEeeceeecccccccHHHHHhcCceEEEcCchHHHHHHhccchheeeeeeEEEecchhHHHhccchhhHHHHHHH
Confidence 4 33333 478889998776 4678999999999999954 789999999998743221
Q ss_pred -----------cCCC-CceEEEeeccc
Q 038192 166 -----------DRVF-PLKLILMSATL 180 (764)
Q Consensus 166 -----------~~~~-~lKlILMSATl 180 (764)
...| .++-+|+|||+
T Consensus 315 v~~~~~~e~~~~~lp~q~q~mLlSATL 341 (708)
T KOG0348|consen 315 VHSIQNAECKDPKLPHQLQNMLLSATL 341 (708)
T ss_pred HhhccchhcccccccHHHHhHhhhhhh
Confidence 0112 35678999999
No 39
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=99.92 E-value=3.3e-24 Score=255.70 Aligned_cols=302 Identities=19% Similarity=0.129 Sum_probs=198.8
Q ss_pred CchhhHHHHHHHHHcCCeEEEEecCCCCccccHHHHHHHhccCCCCCCCCCceEEEecccHHHHHHHHHHHHHHhCCCCC
Q 038192 35 PIVMMEQEIMEAVNDNSAVIICGETGCGKTTQVPQFLFEAGFGSNRCSSRSGRIGVTQPRRVAVLATAKRVAFELGLHLG 114 (764)
Q Consensus 35 Pi~~~~~~Il~~l~~~~vviI~GeTGSGKTTqvPq~Lle~~~~~~~~~~~~~~Ii~tQPRRiaAisvA~RVa~E~g~~lG 114 (764)
--+.+|.+.++++.+++.++++++||||||...-..+++...... ..++++.-|+|.+|.++.+++.. ++ ..|
T Consensus 36 ~p~~~Q~~ai~~il~G~nvvv~apTGSGKTla~~LPiL~~l~~~~-----~~~aL~l~PtraLa~q~~~~l~~-l~-~~~ 108 (742)
T TIGR03817 36 RPWQHQARAAELAHAGRHVVVATGTASGKSLAYQLPVLSALADDP-----RATALYLAPTKALAADQLRAVRE-LT-LRG 108 (742)
T ss_pred cCCHHHHHHHHHHHCCCCEEEECCCCCcHHHHHHHHHHHHHhhCC-----CcEEEEEcChHHHHHHHHHHHHH-hc-cCC
Confidence 456778888888888888999999999999987666776543322 26899999999999999987754 43 223
Q ss_pred CEeeEEeccCc------ccCCCceEEEEchHHHHHHHH-----------H----HHHHHHHHHhh-c-----c---ccCC
Q 038192 115 KEVGFQVRHDK------KIGDSCSIKFMTDGILLRELK-----------A----LYEKQQQLLRS-G-----Q---CIEP 164 (764)
Q Consensus 115 ~~VGY~ir~e~------~~s~~t~I~f~T~GiLLr~l~-----------~----i~de~~~~l~~-~-----~---~~~~ 164 (764)
-.|+--. ++. ...++.+|+++||++|...+. . |+||+|.+... | + +..+
T Consensus 109 i~v~~~~-Gdt~~~~r~~i~~~~~IivtTPd~L~~~~L~~~~~~~~~l~~l~~vViDEah~~~g~fg~~~~~il~rL~ri 187 (742)
T TIGR03817 109 VRPATYD-GDTPTEERRWAREHARYVLTNPDMLHRGILPSHARWARFLRRLRYVVIDECHSYRGVFGSHVALVLRRLRRL 187 (742)
T ss_pred eEEEEEe-CCCCHHHHHHHhcCCCEEEEChHHHHHhhccchhHHHHHHhcCCEEEEeChhhccCccHHHHHHHHHHHHHH
Confidence 3332111 111 123457899999999874331 1 56898875321 0 0 0000
Q ss_pred -ccCCCCceEEEeeccc-chhhhccccCCCCCCCeeeeCCccc---ceeEEecCCCc----------h-hhHHHHHHHHH
Q 038192 165 -KDRVFPLKLILMSATL-RVEDFISGGRLFRNPPIIEVPTRQF---PVTVHFSKRTE----------I-VDYIGQAYKKV 228 (764)
Q Consensus 165 -~~~~~~lKlILMSATl-~~~~f~~~~~~f~~~~vi~i~gr~~---pV~~~y~~~~~----------~-~d~l~~~~~~v 228 (764)
.....+.++|++|||+ +...+.+ .+++.+ +..|....- +.+..+..... . .....+....+
T Consensus 188 ~~~~g~~~q~i~~SATi~n~~~~~~--~l~g~~-~~~i~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~r~~~~~~~~~~l 264 (742)
T TIGR03817 188 CARYGASPVFVLASATTADPAAAAS--RLIGAP-VVAVTEDGSPRGARTVALWEPPLTELTGENGAPVRRSASAEAADLL 264 (742)
T ss_pred HHhcCCCCEEEEEecCCCCHHHHHH--HHcCCC-eEEECCCCCCcCceEEEEecCCccccccccccccccchHHHHHHHH
Confidence 0112467999999999 5555553 456543 333432211 12222111100 0 00111122222
Q ss_pred HHHhhcCCCCCeEEecCCHHHHHHHHHHHHHHHHHhhhhccccccCCccccCCCCCccccchhHHhHHHHHhhcCccccc
Q 038192 229 MSIHKRLPQGGILVFVTGQREVEYLCSKLRKASKQLLVNSSKENKGNQVVADSEPNATKDINMKEINEAFEIQGYSTEQQ 308 (764)
Q Consensus 229 ~~i~~~~~~g~ilvF~~g~~~ie~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q 308 (764)
..+.. .....|||+++++.+|.++..+++...+.
T Consensus 265 ~~l~~--~~~~~IVF~~sr~~ae~l~~~l~~~l~~~-------------------------------------------- 298 (742)
T TIGR03817 265 ADLVA--EGARTLTFVRSRRGAELVAAIARRLLGEV-------------------------------------------- 298 (742)
T ss_pred HHHHH--CCCCEEEEcCCHHHHHHHHHHHHHHHHhh--------------------------------------------
Confidence 22222 24578999999999999888775421000
Q ss_pred ccccCCCCCcccccCccccccccCccchhhhhhccchhhhhhhcCCCCCCCCcccccccchhhhhHHHHHHhhcCCCCCC
Q 038192 309 TDRFSSYDEDQFDIDDNELDALSDSETESETEILGEDEKLVEQKCPMDGDDPVDVLKENWSLGSLKLAFEVLSGKNASGP 388 (764)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilvfl~g~~~i~~l~~~~~~l~~~~~~~~ 388 (764)
.
T Consensus 299 -------------------------------------------~------------------------------------ 299 (742)
T TIGR03817 299 -------------------------------------------D------------------------------------ 299 (742)
T ss_pred -------------------------------------------c------------------------------------
Confidence 0
Q ss_pred CccccCCCCCCCCcCCCCCCCCCCCCCCCCCCCccccccCcccCCCCCeEEEecCCCCCHHHHHhhhccCCCCceEEEEe
Q 038192 389 SSQMKLSTPAIPEQCTELPPTPTPEQCPELSSPDVEKMGDNKRAGVGALCVLPLYAMLPAAAQLRVFEDVKEGERLVVVS 468 (764)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~pLHs~l~~~eQ~~vf~~~~~g~rKVIls 468 (764)
......+..+||++++++|.++.+.+.+|+.+||+|
T Consensus 300 --------------------------------------------~~l~~~v~~~hgg~~~~eR~~ie~~f~~G~i~vLVa 335 (742)
T TIGR03817 300 --------------------------------------------PDLAERVAAYRAGYLPEDRRELERALRDGELLGVAT 335 (742)
T ss_pred --------------------------------------------cccccchhheecCCCHHHHHHHHHHHHcCCceEEEE
Confidence 001235778899999999999999999999999999
Q ss_pred cCcccccCCCCCeEEEEeCCcccceeeccCCCccccceeeccHHhHHHhccccCCCCC-CEEEEccC
Q 038192 469 TNVAETSLTIPGIKYVVDTGREKVKKYNSANGIESYEIQWISKASAAQRAGRAGRTAP-GHCYRLYS 534 (764)
Q Consensus 469 TNIAEtSITIpdV~~VID~G~~K~~~yd~~~~~~~l~~~~iSkasa~QR~GRAGR~~~-G~cyrLys 534 (764)
||++|+||+||+|.+||+.|. |-|.+++.||+|||||.+. |.++-+.+
T Consensus 336 Td~lerGIDI~~vd~VI~~~~------------------P~s~~~y~qRiGRaGR~G~~g~ai~v~~ 384 (742)
T TIGR03817 336 TNALELGVDISGLDAVVIAGF------------------PGTRASLWQQAGRAGRRGQGALVVLVAR 384 (742)
T ss_pred CchHhccCCcccccEEEEeCC------------------CCCHHHHHHhccccCCCCCCcEEEEEeC
Confidence 999999999999999998553 3466888899999999987 99998876
No 40
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=99.92 E-value=3.3e-24 Score=251.75 Aligned_cols=301 Identities=18% Similarity=0.244 Sum_probs=198.5
Q ss_pred CChhHHHhhhcCCC-chhhHHHHHHHHHcCCeEEEEecCCCCccc--cHHHHHHHhccCCCCCCCCCceEEEecccHHHH
Q 038192 22 SRPNEVENNRKDLP-IVMMEQEIMEAVNDNSAVIICGETGCGKTT--QVPQFLFEAGFGSNRCSSRSGRIGVTQPRRVAV 98 (764)
Q Consensus 22 ~~~~~~~~~R~~LP-i~~~~~~Il~~l~~~~vviI~GeTGSGKTT--qvPq~Lle~~~~~~~~~~~~~~Ii~tQPRRiaA 98 (764)
+...++.+..-... -...|+++++++.+++.++++++||||||. |+|..+.. +..+|..|.+..+
T Consensus 11 ~~~~~~l~~~fG~~~~r~~Q~~ai~~il~g~dvlv~apTGsGKTl~y~lpal~~~------------g~tlVisPl~sL~ 78 (607)
T PRK11057 11 SLAKQVLQETFGYQQFRPGQQEIIDAVLSGRDCLVVMPTGGGKSLCYQIPALVLD------------GLTLVVSPLISLM 78 (607)
T ss_pred hHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHHHcC------------CCEEEEecHHHHH
Confidence 33456666555554 235788899999888889999999999998 67765421 3577888999888
Q ss_pred HHHHHHHHHHhCCCCCCEeeEEeccC----------cccCCCceEEEEchHHHHHH--HHH---------HHHHHHHHHh
Q 038192 99 LATAKRVAFELGLHLGKEVGFQVRHD----------KKIGDSCSIKFMTDGILLRE--LKA---------LYEKQQQLLR 157 (764)
Q Consensus 99 isvA~RVa~E~g~~lG~~VGY~ir~e----------~~~s~~t~I~f~T~GiLLr~--l~~---------i~de~~~~l~ 157 (764)
.+...++. ..| ..+++-.... ...+...+|+|+||+.|+.. +.. ++||+|.+..
T Consensus 79 ~dqv~~l~-~~g----i~~~~~~s~~~~~~~~~~~~~~~~g~~~il~~tPe~l~~~~~~~~l~~~~l~~iVIDEaH~i~~ 153 (607)
T PRK11057 79 KDQVDQLL-ANG----VAAACLNSTQTREQQLEVMAGCRTGQIKLLYIAPERLMMDNFLEHLAHWNPALLAVDEAHCISQ 153 (607)
T ss_pred HHHHHHHH-HcC----CcEEEEcCCCCHHHHHHHHHHHhCCCCcEEEEChHHhcChHHHHHHhhCCCCEEEEeCcccccc
Confidence 87766554 233 3333321111 11234578999999998742 111 5689887654
Q ss_pred hcc--c------cCCccCCCCceEEEeecccchhhhccccCCCC-CCCeeeeCCcccceeEEecCCCchhhHHHHHHHHH
Q 038192 158 SGQ--C------IEPKDRVFPLKLILMSATLRVEDFISGGRLFR-NPPIIEVPTRQFPVTVHFSKRTEIVDYIGQAYKKV 228 (764)
Q Consensus 158 ~~~--~------~~~~~~~~~lKlILMSATl~~~~f~~~~~~f~-~~~vi~i~gr~~pV~~~y~~~~~~~d~l~~~~~~v 228 (764)
.|. . ..+....|+.++|+||||++..........++ ..|.+.+.+..-|. ++|.-... ...+.. +
T Consensus 154 ~G~~fr~~y~~L~~l~~~~p~~~~v~lTAT~~~~~~~di~~~l~l~~~~~~~~~~~r~n-l~~~v~~~-~~~~~~----l 227 (607)
T PRK11057 154 WGHDFRPEYAALGQLRQRFPTLPFMALTATADDTTRQDIVRLLGLNDPLIQISSFDRPN-IRYTLVEK-FKPLDQ----L 227 (607)
T ss_pred ccCcccHHHHHHHHHHHhCCCCcEEEEecCCChhHHHHHHHHhCCCCeEEEECCCCCCc-ceeeeeec-cchHHH----H
Confidence 332 1 11123457889999999996542211001222 23444444322221 11210000 111111 1
Q ss_pred HHHhhcCCCCCeEEecCCHHHHHHHHHHHHHHHHHhhhhccccccCCccccCCCCCccccchhHHhHHHHHhhcCccccc
Q 038192 229 MSIHKRLPQGGILVFVTGQREVEYLCSKLRKASKQLLVNSSKENKGNQVVADSEPNATKDINMKEINEAFEIQGYSTEQQ 308 (764)
Q Consensus 229 ~~i~~~~~~g~ilvF~~g~~~ie~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q 308 (764)
..+......+..+||+++.++++.++..|++
T Consensus 228 ~~~l~~~~~~~~IIFc~tr~~~e~la~~L~~------------------------------------------------- 258 (607)
T PRK11057 228 MRYVQEQRGKSGIIYCNSRAKVEDTAARLQS------------------------------------------------- 258 (607)
T ss_pred HHHHHhcCCCCEEEEECcHHHHHHHHHHHHh-------------------------------------------------
Confidence 2222223456778999999888887766642
Q ss_pred ccccCCCCCcccccCccccccccCccchhhhhhccchhhhhhhcCCCCCCCCcccccccchhhhhHHHHHHhhcCCCCCC
Q 038192 309 TDRFSSYDEDQFDIDDNELDALSDSETESETEILGEDEKLVEQKCPMDGDDPVDVLKENWSLGSLKLAFEVLSGKNASGP 388 (764)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilvfl~g~~~i~~l~~~~~~l~~~~~~~~ 388 (764)
T Consensus 259 -------------------------------------------------------------------------------- 258 (607)
T PRK11057 259 -------------------------------------------------------------------------------- 258 (607)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CccccCCCCCCCCcCCCCCCCCCCCCCCCCCCCccccccCcccCCCCCeEEEecCCCCCHHHHHhhhccCCCCceEEEEe
Q 038192 389 SSQMKLSTPAIPEQCTELPPTPTPEQCPELSSPDVEKMGDNKRAGVGALCVLPLYAMLPAAAQLRVFEDVKEGERLVVVS 468 (764)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~pLHs~l~~~eQ~~vf~~~~~g~rKVIls 468 (764)
.++.+.++||+|+.++|.++++.|..|..+||||
T Consensus 259 ----------------------------------------------~g~~v~~~Ha~l~~~~R~~i~~~F~~g~~~VLVa 292 (607)
T PRK11057 259 ----------------------------------------------RGISAAAYHAGLDNDVRADVQEAFQRDDLQIVVA 292 (607)
T ss_pred ----------------------------------------------CCCCEEEecCCCCHHHHHHHHHHHHCCCCCEEEE
Confidence 1245788999999999999999999999999999
Q ss_pred cCcccccCCCCCeEEEEeCCcccceeeccCCCccccceeeccHHhHHHhccccCCCCC-CEEEEccCHHHh
Q 038192 469 TNVAETSLTIPGIKYVVDTGREKVKKYNSANGIESYEIQWISKASAAQRAGRAGRTAP-GHCYRLYSSAVF 538 (764)
Q Consensus 469 TNIAEtSITIpdV~~VID~G~~K~~~yd~~~~~~~l~~~~iSkasa~QR~GRAGR~~~-G~cyrLys~~~~ 538 (764)
|+++++||++|||++||+ ||.+ -|..++.||+|||||.+. |.|+-+|+..++
T Consensus 293 T~a~~~GIDip~V~~VI~--------~d~P----------~s~~~y~Qr~GRaGR~G~~~~~ill~~~~d~ 345 (607)
T PRK11057 293 TVAFGMGINKPNVRFVVH--------FDIP----------RNIESYYQETGRAGRDGLPAEAMLFYDPADM 345 (607)
T ss_pred echhhccCCCCCcCEEEE--------eCCC----------CCHHHHHHHhhhccCCCCCceEEEEeCHHHH
Confidence 999999999999999997 5533 366788899999999985 999999998775
No 41
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.92 E-value=6.3e-24 Score=242.80 Aligned_cols=85 Identities=27% Similarity=0.344 Sum_probs=75.3
Q ss_pred eEEEecCCCCCHHHHHhhhccCCCCceEEEEecCcccccCCCCCeEEEEeCCcccceeeccCCCccccceeeccHHhHHH
Q 038192 437 LCVLPLYAMLPAAAQLRVFEDVKEGERLVVVSTNVAETSLTIPGIKYVVDTGREKVKKYNSANGIESYEIQWISKASAAQ 516 (764)
Q Consensus 437 ~~i~pLHs~l~~~eQ~~vf~~~~~g~rKVIlsTNIAEtSITIpdV~~VID~G~~K~~~yd~~~~~~~l~~~~iSkasa~Q 516 (764)
+.+.++||+|++++|.++++.|..|..+||+||+++++||++|||++||+.+. +. |.+++.|
T Consensus 251 ~~~~~~H~~l~~~eR~~i~~~F~~g~~~vLVaT~~~~~GID~p~V~~VI~~~~--------P~----------s~~~y~Q 312 (470)
T TIGR00614 251 IAAGAYHAGLEISARDDVHHKFQRDEIQVVVATVAFGMGINKPDVRFVIHYSL--------PK----------SMESYYQ 312 (470)
T ss_pred CCeeEeeCCCCHHHHHHHHHHHHcCCCcEEEEechhhccCCcccceEEEEeCC--------CC----------CHHHHHh
Confidence 45778999999999999999999999999999999999999999999997443 32 5677889
Q ss_pred hccccCCCCC-CEEEEccCHHHhc
Q 038192 517 RAGRAGRTAP-GHCYRLYSSAVFN 539 (764)
Q Consensus 517 R~GRAGR~~~-G~cyrLys~~~~~ 539 (764)
|+|||||.+. |.|+-+|+..+..
T Consensus 313 r~GRaGR~G~~~~~~~~~~~~d~~ 336 (470)
T TIGR00614 313 ESGRAGRDGLPSECHLFYAPADIN 336 (470)
T ss_pred hhcCcCCCCCCceEEEEechhHHH
Confidence 9999999985 9999999987653
No 42
>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.92 E-value=5.5e-24 Score=221.18 Aligned_cols=307 Identities=20% Similarity=0.252 Sum_probs=195.5
Q ss_pred CchhhHHHHHHHHHcCCeEEEEecCCCCccccHHHHHHHhccCCCCCCCCCceEEEecccHHHHHHHHHHHHHHhCCCCC
Q 038192 35 PIVMMEQEIMEAVNDNSAVIICGETGCGKTTQVPQFLFEAGFGSNRCSSRSGRIGVTQPRRVAVLATAKRVAFELGLHLG 114 (764)
Q Consensus 35 Pi~~~~~~Il~~l~~~~vviI~GeTGSGKTTqvPq~Lle~~~~~~~~~~~~~~Ii~tQPRRiaAisvA~RVa~E~g~~lG 114 (764)
|... ++..+.+|..++.+|-++.||||||+.+-..+++..-.... ..-.+|.-|+|..|.++|++... .|..++
T Consensus 30 pTpi-Q~~cIpkILeGrdcig~AkTGsGKT~AFaLPil~rLsedP~----giFalvlTPTrELA~QiaEQF~a-lGk~l~ 103 (442)
T KOG0340|consen 30 PTPI-QQACIPKILEGRDCIGCAKTGSGKTAAFALPILNRLSEDPY----GIFALVLTPTRELALQIAEQFIA-LGKLLN 103 (442)
T ss_pred CCch-HhhhhHHHhcccccccccccCCCcchhhhHHHHHhhccCCC----cceEEEecchHHHHHHHHHHHHH-hccccc
Confidence 4433 55566666677778999999999999999999876433221 24578899999999999998763 677666
Q ss_pred CEeeEEeccCc------ccCCCceEEEEchHHHHHHHHH---------------HHHHHHHHHhhccccC---CccCCC-
Q 038192 115 KEVGFQVRHDK------KIGDSCSIKFMTDGILLRELKA---------------LYEKQQQLLRSGQCIE---PKDRVF- 169 (764)
Q Consensus 115 ~~VGY~ir~e~------~~s~~t~I~f~T~GiLLr~l~~---------------i~de~~~~l~~~~~~~---~~~~~~- 169 (764)
..|.--+.+.+ ..+++.+++++|||+|-..+.. ++||+++++..+|-.. +..-.|
T Consensus 104 lK~~vivGG~d~i~qa~~L~~rPHvVvatPGRlad~l~sn~~~~~~~~~rlkflVlDEADrvL~~~f~d~L~~i~e~lP~ 183 (442)
T KOG0340|consen 104 LKVSVIVGGTDMIMQAAILSDRPHVVVATPGRLADHLSSNLGVCSWIFQRLKFLVLDEADRVLAGCFPDILEGIEECLPK 183 (442)
T ss_pred ceEEEEEccHHHhhhhhhcccCCCeEecCccccccccccCCccchhhhhceeeEEecchhhhhccchhhHHhhhhccCCC
Confidence 65554444444 4578899999999999998831 5699999876654221 112223
Q ss_pred CceEEEeecccchhhhccccCCCCCCCeeeeCCcccceeEEecCCCchhhHHHHHHHHHHHHhhcCCCCCeEEecCCHHH
Q 038192 170 PLKLILMSATLRVEDFISGGRLFRNPPIIEVPTRQFPVTVHFSKRTEIVDYIGQAYKKVMSIHKRLPQGGILVFVTGQRE 249 (764)
Q Consensus 170 ~lKlILMSATl~~~~f~~~~~~f~~~~vi~i~gr~~pV~~~y~~~~~~~d~l~~~~~~v~~i~~~~~~g~ilvF~~g~~~ 249 (764)
..+..|+|||+.-.. + ..|+.+.-.. ..|-++.. ++....+-+. ++. +|++..-.
T Consensus 184 ~RQtLlfSATitd~i--~--ql~~~~i~k~---~a~~~e~~--~~vstvetL~--------------q~y--I~~~~~vk 238 (442)
T KOG0340|consen 184 PRQTLLFSATITDTI--K--QLFGCPITKS---IAFELEVI--DGVSTVETLY--------------QGY--ILVSIDVK 238 (442)
T ss_pred ccceEEEEeehhhHH--H--HhhcCCcccc---cceEEecc--CCCCchhhhh--------------hhe--eecchhhh
Confidence 348899999994321 1 2343211110 11222110 0111011111 111 22222111
Q ss_pred HHHHHHHHHHHHHHhhhhccccccCCccccCCCCCccccchhHHhHHHHHhhcCcccccccccCCCCCcccccCcccccc
Q 038192 250 VEYLCSKLRKASKQLLVNSSKENKGNQVVADSEPNATKDINMKEINEAFEIQGYSTEQQTDRFSSYDEDQFDIDDNELDA 329 (764)
Q Consensus 250 ie~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~ 329 (764)
--|+...|+..
T Consensus 239 daYLv~~Lr~~--------------------------------------------------------------------- 249 (442)
T KOG0340|consen 239 DAYLVHLLRDF--------------------------------------------------------------------- 249 (442)
T ss_pred HHHHHHHHhhh---------------------------------------------------------------------
Confidence 11222222210
Q ss_pred ccCccchhhhhhccchhhhhhhcCCCCCCCCcccccccchhhhhHHHHHHhhcCCCCCCCccccCCCCCCCCcCCCCCCC
Q 038192 330 LSDSETESETEILGEDEKLVEQKCPMDGDDPVDVLKENWSLGSLKLAFEVLSGKNASGPSSQMKLSTPAIPEQCTELPPT 409 (764)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilvfl~g~~~i~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 409 (764)
..+..+++.+|.....+-..|...++.|
T Consensus 250 -----------------------~~~~~~simIFvnttr~cQ~l~~~l~~l----------------------------- 277 (442)
T KOG0340|consen 250 -----------------------ENKENGSIMIFVNTTRECQLLSMTLKNL----------------------------- 277 (442)
T ss_pred -----------------------hhccCceEEEEeehhHHHHHHHHHHhhh-----------------------------
Confidence 0012344555555544444444444333
Q ss_pred CCCCCCCCCCCCccccccCcccCCCCCeEEEecCCCCCHHHHHhhhccCCCCceEEEEecCcccccCCCCCeEEEEeCCc
Q 038192 410 PTPEQCPELSSPDVEKMGDNKRAGVGALCVLPLYAMLPAAAQLRVFEDVKEGERLVVVSTNVAETSLTIPGIKYVVDTGR 489 (764)
Q Consensus 410 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~pLHs~l~~~eQ~~vf~~~~~g~rKVIlsTNIAEtSITIpdV~~VID~G~ 489 (764)
++.+..|||.|++++|...+..|+.+.-+|++|||+|.+|++||.|..|||
T Consensus 278 --------------------------e~r~~~lHs~m~Q~eR~~aLsrFrs~~~~iliaTDVAsRGLDIP~V~LVvN--- 328 (442)
T KOG0340|consen 278 --------------------------EVRVVSLHSQMPQKERLAALSRFRSNAARILIATDVASRGLDIPTVELVVN--- 328 (442)
T ss_pred --------------------------ceeeeehhhcchHHHHHHHHHHHhhcCccEEEEechhhcCCCCCceeEEEe---
Confidence 478999999999999999999999999999999999999999999999999
Q ss_pred ccceeeccCCCccccceeeccHHhHHHhccccCCCCC-CEEEEccCHHH
Q 038192 490 EKVKKYNSANGIESYEIQWISKASAAQRAGRAGRTAP-GHCYRLYSSAV 537 (764)
Q Consensus 490 ~K~~~yd~~~~~~~l~~~~iSkasa~QR~GRAGR~~~-G~cyrLys~~~ 537 (764)
||-++.- -.|.||.||+.|.|. |..+-++++.+
T Consensus 329 -----~diPr~P----------~~yiHRvGRtARAGR~G~aiSivt~rD 362 (442)
T KOG0340|consen 329 -----HDIPRDP----------KDYIHRVGRTARAGRKGMAISIVTQRD 362 (442)
T ss_pred -----cCCCCCH----------HHHHHhhcchhcccCCcceEEEechhh
Confidence 4433332 345699999999887 88888888543
No 43
>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.91 E-value=2.5e-24 Score=235.96 Aligned_cols=312 Identities=19% Similarity=0.213 Sum_probs=196.7
Q ss_pred cCCCchhhHHHHHHHHHcCCeEEEEecCCCCccccHHHHHHHhccCCC----CCCC--CCceEEEecccHHHHHHHHHHH
Q 038192 32 KDLPIVMMEQEIMEAVNDNSAVIICGETGCGKTTQVPQFLFEAGFGSN----RCSS--RSGRIGVTQPRRVAVLATAKRV 105 (764)
Q Consensus 32 ~~LPi~~~~~~Il~~l~~~~vviI~GeTGSGKTTqvPq~Lle~~~~~~----~~~~--~~~~Ii~tQPRRiaAisvA~RV 105 (764)
-.-|...+|..| ..|.++..++++|+||||||-.+-..+++..+..+ .... ....+++.-|+|.+|.|+..+.
T Consensus 94 ~~~ptpvQk~si-p~i~~Grdl~acAqTGsGKT~aFLiPii~~~~~~~~~~~~~~~~~~~P~~lIlapTReL~~Qi~nea 172 (482)
T KOG0335|consen 94 YTKPTPVQKYSI-PIISGGRDLMACAQTGSGKTAAFLIPIISYLLDEGPEDRGESGGGVYPRALILAPTRELVDQIYNEA 172 (482)
T ss_pred ccCCCcceeecc-ceeecCCceEEEccCCCcchHHHHHHHHHHHHhcCcccCcccCCCCCCceEEEeCcHHHhhHHHHHH
Confidence 344555554444 66777778999999999999986666665443321 1111 2367889999999999998887
Q ss_pred HHHhCCCC-CCEeeEEe---ccCc-ccCCCceEEEEchHHHHHHHHH-----------HHHHHHHHHh-hccccCCcc--
Q 038192 106 AFELGLHL-GKEVGFQV---RHDK-KIGDSCSIKFMTDGILLRELKA-----------LYEKQQQLLR-SGQCIEPKD-- 166 (764)
Q Consensus 106 a~E~g~~l-G~~VGY~i---r~e~-~~s~~t~I~f~T~GiLLr~l~~-----------i~de~~~~l~-~~~~~~~~~-- 166 (764)
.+-.+..- -..++|+= +... .....+.|++||+|.|.+.+.. ++||+++|++ .+|.-.+..
T Consensus 173 ~k~~~~s~~~~~~~ygg~~~~~q~~~~~~gcdIlvaTpGrL~d~~e~g~i~l~~~k~~vLDEADrMlD~mgF~p~Ir~iv 252 (482)
T KOG0335|consen 173 RKFSYLSGMKSVVVYGGTDLGAQLRFIKRGCDILVATPGRLKDLIERGKISLDNCKFLVLDEADRMLDEMGFEPQIRKIV 252 (482)
T ss_pred HhhcccccceeeeeeCCcchhhhhhhhccCccEEEecCchhhhhhhcceeehhhCcEEEecchHHhhhhccccccHHHHh
Confidence 76654421 11223322 1111 2356899999999999998843 6799999999 787433311
Q ss_pred ----C--CCCceEEEeecccch--hhhccccCCC--CCCCeeee--CCcccceeEEecCCCchhhHHHHHHHHHHHHhhc
Q 038192 167 ----R--VFPLKLILMSATLRV--EDFISGGRLF--RNPPIIEV--PTRQFPVTVHFSKRTEIVDYIGQAYKKVMSIHKR 234 (764)
Q Consensus 167 ----~--~~~lKlILMSATl~~--~~f~~~~~~f--~~~~vi~i--~gr~~pV~~~y~~~~~~~d~l~~~~~~v~~i~~~ 234 (764)
+ ....+.+++|||+.. ...+ .+| .+-..+.| -|++-. +
T Consensus 253 ~~~~~~~~~~~qt~mFSAtfp~~iq~l~---~~fl~~~yi~laV~rvg~~~~------------n--------------- 302 (482)
T KOG0335|consen 253 EQLGMPPKNNRQTLLFSATFPKEIQRLA---ADFLKDNYIFLAVGRVGSTSE------------N--------------- 302 (482)
T ss_pred cccCCCCccceeEEEEeccCChhhhhhH---HHHhhccceEEEEeeeccccc------------c---------------
Confidence 1 246789999999943 3333 222 11011111 011100 0
Q ss_pred CCCCCeEEecCCHHHHHHHHHHHHHHHHHhhhhccccccCCccccCCCCCccccchhHHhHHHHHhhcCcccccccccCC
Q 038192 235 LPQGGILVFVTGQREVEYLCSKLRKASKQLLVNSSKENKGNQVVADSEPNATKDINMKEINEAFEIQGYSTEQQTDRFSS 314 (764)
Q Consensus 235 ~~~g~ilvF~~g~~~ie~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~ 314 (764)
.-.-++|+.-.....++...|.... +. +.
T Consensus 303 --i~q~i~~V~~~~kr~~Lldll~~~~---------~~-~~--------------------------------------- 331 (482)
T KOG0335|consen 303 --ITQKILFVNEMEKRSKLLDLLNKDD---------GP-PS--------------------------------------- 331 (482)
T ss_pred --ceeEeeeecchhhHHHHHHHhhccc---------CC-cc---------------------------------------
Confidence 0012344444333333333332100 00 00
Q ss_pred CCCcccccCccccccccCccchhhhhhccchhhhhhhcCCCCCCCCcccccccchhhhhHHHHHHhhcCCCCCCCccccC
Q 038192 315 YDEDQFDIDDNELDALSDSETESETEILGEDEKLVEQKCPMDGDDPVDVLKENWSLGSLKLAFEVLSGKNASGPSSQMKL 394 (764)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilvfl~g~~~i~~l~~~~~~l~~~~~~~~~~~~~~ 394 (764)
+.+-....++||.-...-.+.+...+.
T Consensus 332 -------------------------------------~~~~~~e~tlvFvEt~~~~d~l~~~l~---------------- 358 (482)
T KOG0335|consen 332 -------------------------------------DGEPKWEKTLVFVETKRGADELAAFLS---------------- 358 (482)
T ss_pred -------------------------------------cCCcccceEEEEeeccchhhHHHHHHh----------------
Confidence 000000124555555444443333221
Q ss_pred CCCCCCCcCCCCCCCCCCCCCCCCCCCccccccCcccCCCCCeEEEecCCCCCHHHHHhhhccCCCCceEEEEecCcccc
Q 038192 395 STPAIPEQCTELPPTPTPEQCPELSSPDVEKMGDNKRAGVGALCVLPLYAMLPAAAQLRVFEDVKEGERLVVVSTNVAET 474 (764)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~pLHs~l~~~eQ~~vf~~~~~g~rKVIlsTNIAEt 474 (764)
...+...++||..++.+|.+.+..|..|+..|+||||||++
T Consensus 359 ---------------------------------------~~~~~~~sIhg~~tq~er~~al~~Fr~g~~pvlVaT~VaaR 399 (482)
T KOG0335|consen 359 ---------------------------------------SNGYPAKSIHGDRTQIEREQALNDFRNGKAPVLVATNVAAR 399 (482)
T ss_pred ---------------------------------------cCCCCceeecchhhhhHHHHHHHHhhcCCcceEEEehhhhc
Confidence 13567889999999999999999999999999999999999
Q ss_pred cCCCCCeEEEEeCCcccceeeccCCCccccceeeccHHhHHHhccccCCCCC-CEEEEccCH
Q 038192 475 SLTIPGIKYVVDTGREKVKKYNSANGIESYEIQWISKASAAQRAGRAGRTAP-GHCYRLYSS 535 (764)
Q Consensus 475 SITIpdV~~VID~G~~K~~~yd~~~~~~~l~~~~iSkasa~QR~GRAGR~~~-G~cyrLys~ 535 (764)
||+||+|++||+ ||-+.....|+ ||.||+||.+. |...-||..
T Consensus 400 GlDi~~V~hVIn--------yDmP~d~d~Yv----------HRIGRTGR~Gn~G~atsf~n~ 443 (482)
T KOG0335|consen 400 GLDIPNVKHVIN--------YDMPADIDDYV----------HRIGRTGRVGNGGRATSFFNE 443 (482)
T ss_pred CCCCCCCceeEE--------eecCcchhhHH----------HhccccccCCCCceeEEEecc
Confidence 999999999997 88777666555 99999999998 999999983
No 44
>KOG0347 consensus RNA helicase [RNA processing and modification]
Probab=99.91 E-value=3.5e-25 Score=240.39 Aligned_cols=344 Identities=19% Similarity=0.203 Sum_probs=219.4
Q ss_pred cCCCchhhHHHHHHHHHcCCeEEEEecCCCCccccHHHHHHHhccCCCC-------CCCCCce--EEEecccHHHHHHHH
Q 038192 32 KDLPIVMMEQEIMEAVNDNSAVIICGETGCGKTTQVPQFLFEAGFGSNR-------CSSRSGR--IGVTQPRRVAVLATA 102 (764)
Q Consensus 32 ~~LPi~~~~~~Il~~l~~~~vviI~GeTGSGKTTqvPq~Lle~~~~~~~-------~~~~~~~--Ii~tQPRRiaAisvA 102 (764)
-.-|...+.--|..+++....|+-.|+||||||.++-..|++.....+. ...+..+ -+|.-|+|.+|++|.
T Consensus 201 Fs~Pt~IQsl~lp~ai~gk~DIlGaAeTGSGKTLAFGIPiv~~l~~~s~~s~e~~~~~~k~~k~~~LV~tPTRELa~QV~ 280 (731)
T KOG0347|consen 201 FSRPTEIQSLVLPAAIRGKVDILGAAETGSGKTLAFGIPIVERLLESSDDSQELSNTSAKYVKPIALVVTPTRELAHQVK 280 (731)
T ss_pred CCCCccchhhcccHhhccchhcccccccCCCceeeecchhhhhhhhccchHhhhhhHHhccCcceeEEecChHHHHHHHH
Confidence 3447777777788888888889999999999999988888772221110 0111233 788899999999998
Q ss_pred HHHHHHh---CCCCCCEeeE-Ee-ccCcccCCCceEEEEchHHHHHHHHH--------------HHHHHHHHHhhccccC
Q 038192 103 KRVAFEL---GLHLGKEVGF-QV-RHDKKIGDSCSIKFMTDGILLRELKA--------------LYEKQQQLLRSGQCIE 163 (764)
Q Consensus 103 ~RVa~E~---g~~lG~~VGY-~i-r~e~~~s~~t~I~f~T~GiLLr~l~~--------------i~de~~~~l~~~~~~~ 163 (764)
+.+-.-- +-.+-..+|. .+ ..+...+....|+++|||+|+..+.+ |+||++||+..|....
T Consensus 281 ~Hl~ai~~~t~i~v~si~GGLavqKQqRlL~~~p~IVVATPGRlweli~e~n~~l~~~k~vkcLVlDEaDRmvekghF~E 360 (731)
T KOG0347|consen 281 QHLKAIAEKTQIRVASITGGLAVQKQQRLLNQRPDIVVATPGRLWELIEEDNTHLGNFKKVKCLVLDEADRMVEKGHFEE 360 (731)
T ss_pred HHHHHhccccCeEEEEeechhHHHHHHHHHhcCCCEEEecchHHHHHHHhhhhhhhhhhhceEEEEccHHHHhhhccHHH
Confidence 8764322 2122222331 11 22333456789999999999998843 5799999998885321
Q ss_pred C---------ccCCCCceEEEeecccchhhhccccCCCCCCCeeeeCCcccceeEEecCCCchhhHHHHHHHHHH-HHhh
Q 038192 164 P---------KDRVFPLKLILMSATLRVEDFISGGRLFRNPPIIEVPTRQFPVTVHFSKRTEIVDYIGQAYKKVM-SIHK 233 (764)
Q Consensus 164 ~---------~~~~~~lKlILMSATl~~~~f~~~~~~f~~~~vi~i~gr~~pV~~~y~~~~~~~d~l~~~~~~v~-~i~~ 233 (764)
+ ...++..+.+++|||++...+.. .- ..-+ ... .++-+.+.+..++ .++.
T Consensus 361 ls~lL~~L~e~~~~~qrQTlVFSATlt~~~~~~---~~-------~~~k---~~~-------k~~~~~~kiq~Lmk~ig~ 420 (731)
T KOG0347|consen 361 LSKLLKHLNEEQKNRQRQTLVFSATLTLVLQQP---LS-------SSRK---KKD-------KEDELNAKIQHLMKKIGF 420 (731)
T ss_pred HHHHHHHhhhhhcccccceEEEEEEeehhhcCh---hH-------Hhhh---ccc-------hhhhhhHHHHHHHHHhCc
Confidence 1 23456789999999997655541 00 0000 000 0112222222222 2333
Q ss_pred cCCCCCeEEecCCH-HHHHHHHHHHHHHHHHhhhhccccccCCccccCCCCCccccchhHHhHHHHHhhcCccccccccc
Q 038192 234 RLPQGGILVFVTGQ-REVEYLCSKLRKASKQLLVNSSKENKGNQVVADSEPNATKDINMKEINEAFEIQGYSTEQQTDRF 312 (764)
Q Consensus 234 ~~~~g~ilvF~~g~-~~ie~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~ 312 (764)
..+| . ++=++.+ ..+..+.+.+- ++
T Consensus 421 ~~kp-k-iiD~t~q~~ta~~l~Es~I------------------------------------~C---------------- 446 (731)
T KOG0347|consen 421 RGKP-K-IIDLTPQSATASTLTESLI------------------------------------EC---------------- 446 (731)
T ss_pred cCCC-e-eEecCcchhHHHHHHHHhh------------------------------------cC----------------
Confidence 2222 1 1222221 11111111100 00
Q ss_pred CCCCCcccccCccccccccCccchhhhhhccchhh-hhhhcCCCCCCCCcccccccchhhhhHHHHHHhhcCCCCCCCcc
Q 038192 313 SSYDEDQFDIDDNELDALSDSETESETEILGEDEK-LVEQKCPMDGDDPVDVLKENWSLGSLKLAFEVLSGKNASGPSSQ 391 (764)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ilvfl~g~~~i~~l~~~~~~l~~~~~~~~~~~ 391 (764)
-.++++ ++.......+|..+||..++.++..|.-.+..|
T Consensus 447 -----------------------------~~~eKD~ylyYfl~ryPGrTlVF~NsId~vKRLt~~L~~L----------- 486 (731)
T KOG0347|consen 447 -----------------------------PPLEKDLYLYYFLTRYPGRTLVFCNSIDCVKRLTVLLNNL----------- 486 (731)
T ss_pred -----------------------------CccccceeEEEEEeecCCceEEEechHHHHHHHHHHHhhc-----------
Confidence 000111 112233456899999999999998887766654
Q ss_pred ccCCCCCCCCcCCCCCCCCCCCCCCCCCCCccccccCcccCCCCCeEEEecCCCCCHHHHHhhhccCCCCceEEEEecCc
Q 038192 392 MKLSTPAIPEQCTELPPTPTPEQCPELSSPDVEKMGDNKRAGVGALCVLPLYAMLPAAAQLRVFEDVKEGERLVVVSTNV 471 (764)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~pLHs~l~~~eQ~~vf~~~~~g~rKVIlsTNI 471 (764)
++.-+|||++|.+.+|.+-++.|....--|+|||+|
T Consensus 487 --------------------------------------------~i~p~~LHA~M~QKqRLknLEkF~~~~~~VLiaTDV 522 (731)
T KOG0347|consen 487 --------------------------------------------DIPPLPLHASMIQKQRLKNLEKFKQSPSGVLIATDV 522 (731)
T ss_pred --------------------------------------------CCCCchhhHHHHHHHHHHhHHHHhcCCCeEEEeehh
Confidence 245789999999999999999998888889999999
Q ss_pred ccccCCCCCeEEEEeCCcccceeeccCCCccccceeeccHHhHHHhccccCCCCC-CEEEEccCHHHhcccCCCCCCCcc
Q 038192 472 AETSLTIPGIKYVVDTGREKVKKYNSANGIESYEIQWISKASAAQRAGRAGRTAP-GHCYRLYSSAVFNNILPDFSCAEI 550 (764)
Q Consensus 472 AEtSITIpdV~~VID~G~~K~~~yd~~~~~~~l~~~~iSkasa~QR~GRAGR~~~-G~cyrLys~~~~~~~l~~~~~PEI 550 (764)
|+|||+||+|.+||. |.-+...+.|+ ||.||+.|... |+..-|+.+..-
T Consensus 523 AARGLDIp~V~HVIH--------YqVPrtseiYV----------HRSGRTARA~~~Gvsvml~~P~e~------------ 572 (731)
T KOG0347|consen 523 AARGLDIPGVQHVIH--------YQVPRTSEIYV----------HRSGRTARANSEGVSVMLCGPQEV------------ 572 (731)
T ss_pred hhccCCCCCcceEEE--------eecCCccceeE----------ecccccccccCCCeEEEEeChHHh------------
Confidence 999999999999995 77666666666 99999999997 999988887643
Q ss_pred cccChhhHHHHHHHc
Q 038192 551 SKVPVDGVVLLMKSM 565 (764)
Q Consensus 551 ~r~~L~~~~L~lk~l 565 (764)
.++-.+|=.++..
T Consensus 573 --~~~~KL~ktL~k~ 585 (731)
T KOG0347|consen 573 --GPLKKLCKTLKKK 585 (731)
T ss_pred --HHHHHHHHHHhhc
Confidence 2355666666654
No 45
>KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.91 E-value=6e-24 Score=223.52 Aligned_cols=318 Identities=20% Similarity=0.232 Sum_probs=203.0
Q ss_pred cCChhHHHhhhc----CCCchhhHHHHHHHHHcCCeEEEEecCCCCcccc--HHHHHHHhccCCCCCCCCCceEEEeccc
Q 038192 21 VSRPNEVENNRK----DLPIVMMEQEIMEAVNDNSAVIICGETGCGKTTQ--VPQFLFEAGFGSNRCSSRSGRIGVTQPR 94 (764)
Q Consensus 21 ~~~~~~~~~~R~----~LPi~~~~~~Il~~l~~~~vviI~GeTGSGKTTq--vPq~Lle~~~~~~~~~~~~~~Ii~tQPR 94 (764)
|..++++.+.-+ .-|...+-+.- ..+.++..++..+.||+|||.. +|-++.=..-...........+++.-||
T Consensus 225 Fq~~pevmenIkK~GFqKPtPIqSQaW-PI~LQG~DliGVAQTgtgKtL~~L~pg~ihi~aqp~~~~qr~~p~~lvl~pt 303 (629)
T KOG0336|consen 225 FQCYPEVMENIKKTGFQKPTPIQSQAW-PILLQGIDLIGVAQTGTGKTLAFLLPGFIHIDAQPKRREQRNGPGVLVLTPT 303 (629)
T ss_pred HhhhHHHHHHHHhccCCCCCcchhccc-ceeecCcceEEEEecCCCcCHHHhccceeeeeccchhhhccCCCceEEEecc
Confidence 344555554432 23444444444 4445555588899999999975 3333321110001111123578999999
Q ss_pred HHHHHHHHHHHHHHhCCCCCCEeeEEe--ccCc--ccCCCceEEEEchHHHHHHHHH-----------HHHHHHHHHhhc
Q 038192 95 RVAVLATAKRVAFELGLHLGKEVGFQV--RHDK--KIGDSCSIKFMTDGILLRELKA-----------LYEKQQQLLRSG 159 (764)
Q Consensus 95 RiaAisvA~RVa~E~g~~lG~~VGY~i--r~e~--~~s~~t~I~f~T~GiLLr~l~~-----------i~de~~~~l~~~ 159 (764)
|.+|.++--.+.++.-..+-..+=|+- |-+. .......|++||||.|.+.... ++||+++||++|
T Consensus 304 reLalqie~e~~kysyng~ksvc~ygggnR~eqie~lkrgveiiiatPgrlndL~~~n~i~l~siTYlVlDEADrMLDMg 383 (629)
T KOG0336|consen 304 RELALQIEGEVKKYSYNGLKSVCVYGGGNRNEQIEDLKRGVEIIIATPGRLNDLQMDNVINLASITYLVLDEADRMLDMG 383 (629)
T ss_pred HHHHHHHHhHHhHhhhcCcceEEEecCCCchhHHHHHhcCceEEeeCCchHhhhhhcCeeeeeeeEEEEecchhhhhccc
Confidence 999999988888877544434443432 3332 2356788999999999997632 679999999999
Q ss_pred ccc----CCccCCCCceEEEeecccc--hhhhccccCCCCCCCeeeeCCcc-----cceeEEecCCCchhhHHHHHHHHH
Q 038192 160 QCI----EPKDRVFPLKLILMSATLR--VEDFISGGRLFRNPPIIEVPTRQ-----FPVTVHFSKRTEIVDYIGQAYKKV 228 (764)
Q Consensus 160 ~~~----~~~~~~~~lKlILMSATl~--~~~f~~~~~~f~~~~vi~i~gr~-----~pV~~~y~~~~~~~d~l~~~~~~v 228 (764)
|-- .++..+||.++|+.|||.. +..++. .|..++-++.+ |.. ..|+.++.-.+. .+.+ +.....
T Consensus 384 FEpqIrkilldiRPDRqtvmTSATWP~~VrrLa~--sY~Kep~~v~v-GsLdL~a~~sVkQ~i~v~~d-~~k~-~~~~~f 458 (629)
T KOG0336|consen 384 FEPQIRKILLDIRPDRQTVMTSATWPEGVRRLAQ--SYLKEPMIVYV-GSLDLVAVKSVKQNIIVTTD-SEKL-EIVQFF 458 (629)
T ss_pred ccHHHHHHhhhcCCcceeeeecccCchHHHHHHH--HhhhCceEEEe-cccceeeeeeeeeeEEeccc-HHHH-HHHHHH
Confidence 843 2346789999999999993 445554 57765444433 322 223322211111 1111 111111
Q ss_pred HHHhhcCCCCCeEEecCCHHHHHHHHHHHHHHHHHhhhhccccccCCccccCCCCCccccchhHHhHHHHHhhcCccccc
Q 038192 229 MSIHKRLPQGGILVFVTGQREVEYLCSKLRKASKQLLVNSSKENKGNQVVADSEPNATKDINMKEINEAFEIQGYSTEQQ 308 (764)
Q Consensus 229 ~~i~~~~~~g~ilvF~~g~~~ie~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q 308 (764)
.+.+. +...+++|+..+.-.+.|
T Consensus 459 ~~~ms--~ndKvIiFv~~K~~AD~L------------------------------------------------------- 481 (629)
T KOG0336|consen 459 VANMS--SNDKVIIFVSRKVMADHL------------------------------------------------------- 481 (629)
T ss_pred HHhcC--CCceEEEEEechhhhhhc-------------------------------------------------------
Confidence 11111 122344454322100000
Q ss_pred ccccCCCCCcccccCccccccccCccchhhhhhccchhhhhhhcCCCCCCCCcccccccchhhhhHHHHHHhhcCCCCCC
Q 038192 309 TDRFSSYDEDQFDIDDNELDALSDSETESETEILGEDEKLVEQKCPMDGDDPVDVLKENWSLGSLKLAFEVLSGKNASGP 388 (764)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilvfl~g~~~i~~l~~~~~~l~~~~~~~~ 388 (764)
..
T Consensus 482 -----------------------------------------------------------------SS------------- 483 (629)
T KOG0336|consen 482 -----------------------------------------------------------------SS------------- 483 (629)
T ss_pred -----------------------------------------------------------------cc-------------
Confidence 00
Q ss_pred CccccCCCCCCCCcCCCCCCCCCCCCCCCCCCCccccccCcccCCCCCeEEEecCCCCCHHHHHhhhccCCCCceEEEEe
Q 038192 389 SSQMKLSTPAIPEQCTELPPTPTPEQCPELSSPDVEKMGDNKRAGVGALCVLPLYAMLPAAAQLRVFEDVKEGERLVVVS 468 (764)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~pLHs~l~~~eQ~~vf~~~~~g~rKVIls 468 (764)
.| ...++..-.|||+-.+.+|.+++..++.|..+|++|
T Consensus 484 -----------------------------------------d~-~l~gi~~q~lHG~r~Q~DrE~al~~~ksG~vrILva 521 (629)
T KOG0336|consen 484 -----------------------------------------DF-CLKGISSQSLHGNREQSDREMALEDFKSGEVRILVA 521 (629)
T ss_pred -----------------------------------------hh-hhcccchhhccCChhhhhHHHHHHhhhcCceEEEEE
Confidence 00 013466778999999999999999999999999999
Q ss_pred cCcccccCCCCCeEEEEeCCcccceeeccCCCccccceeeccHHhHHHhccccCCCCC-CEEEEccCHHHhc
Q 038192 469 TNVAETSLTIPGIKYVVDTGREKVKKYNSANGIESYEIQWISKASAAQRAGRAGRTAP-GHCYRLYSSAVFN 539 (764)
Q Consensus 469 TNIAEtSITIpdV~~VID~G~~K~~~yd~~~~~~~l~~~~iSkasa~QR~GRAGR~~~-G~cyrLys~~~~~ 539 (764)
|++|.+||++|||++|+| ||.+.+++.|+ ||.||+||++. |....++++.++.
T Consensus 522 TDlaSRGlDv~DiTHV~N--------yDFP~nIeeYV----------HRvGrtGRaGr~G~sis~lt~~D~~ 575 (629)
T KOG0336|consen 522 TDLASRGLDVPDITHVYN--------YDFPRNIEEYV----------HRVGRTGRAGRTGTSISFLTRNDWS 575 (629)
T ss_pred echhhcCCCchhcceeec--------cCCCccHHHHH----------HHhcccccCCCCcceEEEEehhhHH
Confidence 999999999999999998 88888887766 99999999997 9999999998774
No 46
>KOG0326 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.91 E-value=2.1e-24 Score=221.09 Aligned_cols=300 Identities=21% Similarity=0.246 Sum_probs=213.5
Q ss_pred CCCchhhHHHHHHHHHcCCeEEEEecCCCCccccHHHHHHHhccCCCCCCCCCceEEEecccHHHHHHHHHHHHHHhCCC
Q 038192 33 DLPIVMMEQEIMEAVNDNSAVIICGETGCGKTTQVPQFLFEAGFGSNRCSSRSGRIGVTQPRRVAVLATAKRVAFELGLH 112 (764)
Q Consensus 33 ~LPi~~~~~~Il~~l~~~~vviI~GeTGSGKTTqvPq~Lle~~~~~~~~~~~~~~Ii~tQPRRiaAisvA~RVa~E~g~~ 112 (764)
.-|...+.+.|.-++-..+ ++.-+..|+|||...-..+||..-.+.. ..+.+|..|+|..|.++++ |+.+++..
T Consensus 106 ekPSPiQeesIPiaLtGrd-iLaRaKNGTGKT~a~~IP~Lekid~~~~----~IQ~~ilVPtrelALQtSq-vc~~lskh 179 (459)
T KOG0326|consen 106 EKPSPIQEESIPIALTGRD-ILARAKNGTGKTAAYCIPVLEKIDPKKN----VIQAIILVPTRELALQTSQ-VCKELSKH 179 (459)
T ss_pred CCCCCccccccceeecchh-hhhhccCCCCCccceechhhhhcCcccc----ceeEEEEeecchhhHHHHH-HHHHHhcc
Confidence 4566666777766665555 7889999999999877778886433222 2567889999999999976 88999998
Q ss_pred CCCEeeEEeccCc------ccCCCceEEEEchHHHHHHHHH-----------HHHHHHHHHhhccccCC----ccCCCCc
Q 038192 113 LGKEVGFQVRHDK------KIGDSCSIKFMTDGILLRELKA-----------LYEKQQQLLRSGQCIEP----KDRVFPL 171 (764)
Q Consensus 113 lG~~VGY~ir~e~------~~s~~t~I~f~T~GiLLr~l~~-----------i~de~~~~l~~~~~~~~----~~~~~~l 171 (764)
+|-.|---..+.+ +.+...+++++|||++|+.+.. ++||++.++..+|.-.+ ....++-
T Consensus 180 ~~i~vmvttGGT~lrDDI~Rl~~~VH~~vgTPGRIlDL~~KgVa~ls~c~~lV~DEADKlLs~~F~~~~e~li~~lP~~r 259 (459)
T KOG0326|consen 180 LGIKVMVTTGGTSLRDDIMRLNQTVHLVVGTPGRILDLAKKGVADLSDCVILVMDEADKLLSVDFQPIVEKLISFLPKER 259 (459)
T ss_pred cCeEEEEecCCcccccceeeecCceEEEEcCChhHHHHHhcccccchhceEEEechhhhhhchhhhhHHHHHHHhCCccc
Confidence 8865533333222 3456778999999999998843 67999887765552211 1123467
Q ss_pred eEEEeeccc--chhhhccccCCCCCCCeeeeCCcc--cceeEEecCCCchhhHHHHHHHHHHHHhhcCCCCCeEEecCCH
Q 038192 172 KLILMSATL--RVEDFISGGRLFRNPPIIEVPTRQ--FPVTVHFSKRTEIVDYIGQAYKKVMSIHKRLPQGGILVFVTGQ 247 (764)
Q Consensus 172 KlILMSATl--~~~~f~~~~~~f~~~~vi~i~gr~--~pV~~~y~~~~~~~d~l~~~~~~v~~i~~~~~~g~ilvF~~g~ 247 (764)
+++|+|||+ -+..|.. +|..++-.|..-... -.|..||.-..+ .+.+..+-.+..++.-...++|+++-
T Consensus 260 QillySATFP~tVk~Fm~--~~l~kPy~INLM~eLtl~GvtQyYafV~e-----~qKvhCLntLfskLqINQsIIFCNS~ 332 (459)
T KOG0326|consen 260 QILLYSATFPLTVKGFMD--RHLKKPYEINLMEELTLKGVTQYYAFVEE-----RQKVHCLNTLFSKLQINQSIIFCNST 332 (459)
T ss_pred eeeEEecccchhHHHHHH--HhccCcceeehhhhhhhcchhhheeeech-----hhhhhhHHHHHHHhcccceEEEeccc
Confidence 899999999 5567765 677766555443322 224455542111 01111122233344556678888888
Q ss_pred HHHHHHHHHHHHHHHHhhhhccccccCCccccCCCCCccccchhHHhHHHHHhhcCcccccccccCCCCCcccccCcccc
Q 038192 248 REVEYLCSKLRKASKQLLVNSSKENKGNQVVADSEPNATKDINMKEINEAFEIQGYSTEQQTDRFSSYDEDQFDIDDNEL 327 (764)
Q Consensus 248 ~~ie~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~ 327 (764)
..+|.+++++.+
T Consensus 333 ~rVELLAkKITe-------------------------------------------------------------------- 344 (459)
T KOG0326|consen 333 NRVELLAKKITE-------------------------------------------------------------------- 344 (459)
T ss_pred hHhHHHHHHHHh--------------------------------------------------------------------
Confidence 888877665521
Q ss_pred ccccCccchhhhhhccchhhhhhhcCCCCCCCCcccccccchhhhhHHHHHHhhcCCCCCCCccccCCCCCCCCcCCCCC
Q 038192 328 DALSDSETESETEILGEDEKLVEQKCPMDGDDPVDVLKENWSLGSLKLAFEVLSGKNASGPSSQMKLSTPAIPEQCTELP 407 (764)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilvfl~g~~~i~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 407 (764)
T Consensus 345 -------------------------------------------------------------------------------- 344 (459)
T KOG0326|consen 345 -------------------------------------------------------------------------------- 344 (459)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCCCCCCCccccccCcccCCCCCeEEEecCCCCCHHHHHhhhccCCCCceEEEEecCcccccCCCCCeEEEEeC
Q 038192 408 PTPTPEQCPELSSPDVEKMGDNKRAGVGALCVLPLYAMLPAAAQLRVFEDVKEGERLVVVSTNVAETSLTIPGIKYVVDT 487 (764)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~pLHs~l~~~eQ~~vf~~~~~g~rKVIlsTNIAEtSITIpdV~~VID~ 487 (764)
-++.++-.|+.|-+++|.+||..|.+|..+.+|||+..-+||+|+.|.+|||+
T Consensus 345 ---------------------------lGyscyyiHakM~Q~hRNrVFHdFr~G~crnLVctDL~TRGIDiqavNvVINF 397 (459)
T KOG0326|consen 345 ---------------------------LGYSCYYIHAKMAQEHRNRVFHDFRNGKCRNLVCTDLFTRGIDIQAVNVVINF 397 (459)
T ss_pred ---------------------------ccchhhHHHHHHHHhhhhhhhhhhhccccceeeehhhhhcccccceeeEEEec
Confidence 12456778999999999999999999999999999999999999999999995
Q ss_pred CcccceeeccCCCccccceeeccHHhHHHhccccCCCCC-CEEEEccCHHHh
Q 038192 488 GREKVKKYNSANGIESYEIQWISKASAAQRAGRAGRTAP-GHCYRLYSSAVF 538 (764)
Q Consensus 488 G~~K~~~yd~~~~~~~l~~~~iSkasa~QR~GRAGR~~~-G~cyrLys~~~~ 538 (764)
.++| . -.+|.||.||+||.+. |.++.|.|-++-
T Consensus 398 Dfpk--------~----------aEtYLHRIGRsGRFGhlGlAInLityedr 431 (459)
T KOG0326|consen 398 DFPK--------N----------AETYLHRIGRSGRFGHLGLAINLITYEDR 431 (459)
T ss_pred CCCC--------C----------HHHHHHHccCCccCCCcceEEEEEehhhh
Confidence 5544 2 3456699999999998 999999996544
No 47
>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.91 E-value=6.4e-24 Score=228.43 Aligned_cols=308 Identities=20% Similarity=0.256 Sum_probs=200.2
Q ss_pred CchhhHHHHHHHHHcCCeEEEEecCCCCccccHHHHHHHhccCCCC-CCCCCceEEEecccHHHHHHHHHHHHHHhCCCC
Q 038192 35 PIVMMEQEIMEAVNDNSAVIICGETGCGKTTQVPQFLFEAGFGSNR-CSSRSGRIGVTQPRRVAVLATAKRVAFELGLHL 113 (764)
Q Consensus 35 Pi~~~~~~Il~~l~~~~vviI~GeTGSGKTTqvPq~Lle~~~~~~~-~~~~~~~Ii~tQPRRiaAisvA~RVa~E~g~~l 113 (764)
|...+-+ ++.....++.|+-.+.||||||..+-...+.+...+.. ..+.....++..|+|..|.+|-. +|+.+|...
T Consensus 246 ptpiq~q-alptalsgrdvigIAktgSgktaAfi~pm~~himdq~eL~~g~gPi~vilvPTrela~Qi~~-eaKkf~K~y 323 (731)
T KOG0339|consen 246 PTPIQCQ-ALPTALSGRDVIGIAKTGSGKTAAFIWPMIVHIMDQPELKPGEGPIGVILVPTRELASQIFS-EAKKFGKAY 323 (731)
T ss_pred CCccccc-ccccccccccchheeeccCcchhHHHHHHHHHhcchhhhcCCCCCeEEEEeccHHHHHHHHH-HHHHhhhhc
Confidence 4433333 33444445557777999999999877766544322111 01122456778899999999865 677776655
Q ss_pred CCEee--EE--eccC--cccCCCceEEEEchHHHHHHHHH-----------HHHHHHHHHhhccccCC----ccCCCCce
Q 038192 114 GKEVG--FQ--VRHD--KKIGDSCSIKFMTDGILLRELKA-----------LYEKQQQLLRSGQCIEP----KDRVFPLK 172 (764)
Q Consensus 114 G~~VG--Y~--ir~e--~~~s~~t~I~f~T~GiLLr~l~~-----------i~de~~~~l~~~~~~~~----~~~~~~lK 172 (764)
|-.|- |+ -..+ +.....+.|++||||+|++++.. ++||+++|...||.-.+ ...+|+-+
T Consensus 324 gl~~v~~ygGgsk~eQ~k~Lk~g~EivVaTPgRlid~VkmKatn~~rvS~LV~DEadrmfdmGfe~qVrSI~~hirpdrQ 403 (731)
T KOG0339|consen 324 GLRVVAVYGGGSKWEQSKELKEGAEIVVATPGRLIDMVKMKATNLSRVSYLVLDEADRMFDMGFEPQVRSIKQHIRPDRQ 403 (731)
T ss_pred cceEEEeecCCcHHHHHHhhhcCCeEEEechHHHHHHHHhhcccceeeeEEEEechhhhhccccHHHHHHHHhhcCCcce
Confidence 53322 22 1111 12346789999999999999842 68999999999986433 23579999
Q ss_pred EEEeeccc--chhhhccccCCCCCCCeeeeCCcccceeEEecCCCchhhHHHHHHHHHHHHhhcCCCCCeEEecCCHHHH
Q 038192 173 LILMSATL--RVEDFISGGRLFRNPPIIEVPTRQFPVTVHFSKRTEIVDYIGQAYKKVMSIHKRLPQGGILVFVTGQREV 250 (764)
Q Consensus 173 lILMSATl--~~~~f~~~~~~f~~~~vi~i~gr~~pV~~~y~~~~~~~d~l~~~~~~v~~i~~~~~~g~ilvF~~g~~~i 250 (764)
.+++|||+ .++.++. .++.++ |-.|.| ++--. . +|+. + .+-|+-+.....
T Consensus 404 tllFsaTf~~kIe~lar--d~L~dp-VrvVqg-----~vgea---n-~dIT-Q---------------~V~V~~s~~~Kl 455 (731)
T KOG0339|consen 404 TLLFSATFKKKIEKLAR--DILSDP-VRVVQG-----EVGEA---N-EDIT-Q---------------TVSVCPSEEKKL 455 (731)
T ss_pred EEEeeccchHHHHHHHH--HHhcCC-eeEEEe-----ehhcc---c-cchh-h---------------eeeeccCcHHHH
Confidence 99999999 4555653 344442 222222 11000 0 1100 0 012233333333
Q ss_pred HHHHHHHHHHHHHhhhhccccccCCccccCCCCCccccchhHHhHHHHHhhcCcccccccccCCCCCcccccCccccccc
Q 038192 251 EYLCSKLRKASKQLLVNSSKENKGNQVVADSEPNATKDINMKEINEAFEIQGYSTEQQTDRFSSYDEDQFDIDDNELDAL 330 (764)
Q Consensus 251 e~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~ 330 (764)
.|+...|-..
T Consensus 456 ~wl~~~L~~f---------------------------------------------------------------------- 465 (731)
T KOG0339|consen 456 NWLLRHLVEF---------------------------------------------------------------------- 465 (731)
T ss_pred HHHHHHhhhh----------------------------------------------------------------------
Confidence 3433333110
Q ss_pred cCccchhhhhhccchhhhhhhcCCCCCCCCcccccccchhhhhHHHHHHhhcCCCCCCCccccCCCCCCCCcCCCCCCCC
Q 038192 331 SDSETESETEILGEDEKLVEQKCPMDGDDPVDVLKENWSLGSLKLAFEVLSGKNASGPSSQMKLSTPAIPEQCTELPPTP 410 (764)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilvfl~g~~~i~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 410 (764)
...|.+|+|.....+...+...|.
T Consensus 466 ------------------------~S~gkvlifVTKk~~~e~i~a~Lk-------------------------------- 489 (731)
T KOG0339|consen 466 ------------------------SSEGKVLIFVTKKADAEEIAANLK-------------------------------- 489 (731)
T ss_pred ------------------------ccCCcEEEEEeccCCHHHHHHHhc--------------------------------
Confidence 012445555555544444433221
Q ss_pred CCCCCCCCCCCccccccCcccCCCCCeEEEecCCCCCHHHHHhhhccCCCCceEEEEecCcccccCCCCCeEEEEeCCcc
Q 038192 411 TPEQCPELSSPDVEKMGDNKRAGVGALCVLPLYAMLPAAAQLRVFEDVKEGERLVVVSTNVAETSLTIPGIKYVVDTGRE 490 (764)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~pLHs~l~~~eQ~~vf~~~~~g~rKVIlsTNIAEtSITIpdV~~VID~G~~ 490 (764)
...+.|..|||++.+.+|.+++..|+++..-|+++|++|.+++||++++-||+
T Consensus 490 -----------------------lk~~~v~llhgdkdqa~rn~~ls~fKkk~~~VlvatDvaargldI~~ikTVvn---- 542 (731)
T KOG0339|consen 490 -----------------------LKGFNVSLLHGDKDQAERNEVLSKFKKKRKPVLVATDVAARGLDIPSIKTVVN---- 542 (731)
T ss_pred -----------------------cccceeeeecCchhhHHHHHHHHHHhhcCCceEEEeeHhhcCCCccccceeec----
Confidence 14588999999999999999999999998999999999999999999999998
Q ss_pred cceeeccCCCccccceeeccHHhHHHhccccCCCCC-CEEEEccCHHHhc
Q 038192 491 KVKKYNSANGIESYEIQWISKASAAQRAGRAGRTAP-GHCYRLYSSAVFN 539 (764)
Q Consensus 491 K~~~yd~~~~~~~l~~~~iSkasa~QR~GRAGR~~~-G~cyrLys~~~~~ 539 (764)
||.-..++... ||.||+||.+. |+.|.|.|+.+-+
T Consensus 543 ----yD~ardIdtht----------hrigrtgRag~kGvayTlvTeKDa~ 578 (731)
T KOG0339|consen 543 ----YDFARDIDTHT----------HRIGRTGRAGEKGVAYTLVTEKDAE 578 (731)
T ss_pred ----ccccchhHHHH----------HHhhhcccccccceeeEEechhhHH
Confidence 77777776666 99999999998 9999999997653
No 48
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=99.90 E-value=1.1e-23 Score=232.71 Aligned_cols=125 Identities=19% Similarity=0.172 Sum_probs=83.1
Q ss_pred eEEEEecCCCCccccHHHHHHHhccCCCCCCCCCceEEEecccHHHHHHHHHHHHHHhCCCCCCEeeE------EeccC-
Q 038192 52 AVIICGETGCGKTTQVPQFLFEAGFGSNRCSSRSGRIGVTQPRRVAVLATAKRVAFELGLHLGKEVGF------QVRHD- 124 (764)
Q Consensus 52 vviI~GeTGSGKTTqvPq~Lle~~~~~~~~~~~~~~Ii~tQPRRiaAisvA~RVa~E~g~~lG~~VGY------~ir~e- 124 (764)
+++|+|+||||||+...+++++...... ..+++++.|+|.+|.++++++..-+|..+|...|- ....+
T Consensus 1 ~vvi~apTGsGKT~~~~~~~l~~~~~~~-----~~~ii~v~P~~~L~~q~~~~l~~~f~~~~~~~~~~~~~~~~~~~~~~ 75 (358)
T TIGR01587 1 LLVIEAPTGYGKTEAALLWALHSIKSQK-----ADRVIIALPTRATINAMYRRAKELFGSNLGLLHSSSSFKRIKEMGDS 75 (358)
T ss_pred CEEEEeCCCCCHHHHHHHHHHHHHhhCC-----CCeEEEEeehHHHHHHHHHHHHHHhCcccEEeeccHHHHHHhccCCc
Confidence 4799999999999999999987632221 25899999999999999999998777655422221 00000
Q ss_pred ----cc---------cCCCceEEEEchHHHHHHHHH-----------------HHHHHHHHHhhc--cccCCcc--CCCC
Q 038192 125 ----KK---------IGDSCSIKFMTDGILLRELKA-----------------LYEKQQQLLRSG--QCIEPKD--RVFP 170 (764)
Q Consensus 125 ----~~---------~s~~t~I~f~T~GiLLr~l~~-----------------i~de~~~~l~~~--~~~~~~~--~~~~ 170 (764)
.. ......|+++|++.++..+.. |+||+|.+...+ ++..+.. ...+
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iViDE~h~~~~~~~~~l~~~l~~l~~~~ 155 (358)
T TIGR01587 76 EEFEHLFPLYIHSNDKLFLDPITVCTIDQVLKSVFGEFGHYEFTLASIANSLLIFDEVHFYDEYTLALILAVLEVLKDND 155 (358)
T ss_pred hhHHHHHHHHhhchhhhhhCCeeeCCHHHHHHHHhcccchHHHHHHHhcCCEEEEeCCCCCCHHHHHHHHHHHHHHHHcC
Confidence 00 012357999999998876532 458877654321 1111111 1246
Q ss_pred ceEEEeecccc
Q 038192 171 LKLILMSATLR 181 (764)
Q Consensus 171 lKlILMSATl~ 181 (764)
.++|+||||+.
T Consensus 156 ~~~i~~SATlp 166 (358)
T TIGR01587 156 VPILLMSATLP 166 (358)
T ss_pred CCEEEEecCch
Confidence 89999999995
No 49
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=99.90 E-value=7.2e-23 Score=243.11 Aligned_cols=311 Identities=18% Similarity=0.205 Sum_probs=195.7
Q ss_pred hHHHhhhcCCCc--hhhHHHHHHHHHcC------CeEEEEecCCCCccccHHHHHHHhccCCCCCCCCCceEEEecccHH
Q 038192 25 NEVENNRKDLPI--VMMEQEIMEAVNDN------SAVIICGETGCGKTTQVPQFLFEAGFGSNRCSSRSGRIGVTQPRRV 96 (764)
Q Consensus 25 ~~~~~~R~~LPi--~~~~~~Il~~l~~~------~vviI~GeTGSGKTTqvPq~Lle~~~~~~~~~~~~~~Ii~tQPRRi 96 (764)
..+.++...||- ...|++.+..|.+. ..++++|+||||||...-..++..... .+++++..|+|+
T Consensus 249 ~~~~~~~~~l~f~lt~~Q~~ai~~I~~d~~~~~~~~~Ll~~~TGSGKT~va~~~il~~~~~-------g~q~lilaPT~~ 321 (681)
T PRK10917 249 ELLKKFLASLPFELTGAQKRVVAEILADLASPKPMNRLLQGDVGSGKTVVAALAALAAIEA-------GYQAALMAPTEI 321 (681)
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhhhccCCceEEEECCCCCcHHHHHHHHHHHHHHc-------CCeEEEEeccHH
Confidence 345566666764 45566666666554 257999999999998766666554321 157899999999
Q ss_pred HHHHHHHHHHHHhCCCCCCEeeEEeccCcc----------cCCCceEEEEchHHHHHHH--HH----HHHHHHHHHhhcc
Q 038192 97 AVLATAKRVAFELGLHLGKEVGFQVRHDKK----------IGDSCSIKFMTDGILLREL--KA----LYEKQQQLLRSGQ 160 (764)
Q Consensus 97 aAisvA~RVa~E~g~~lG~~VGY~ir~e~~----------~s~~t~I~f~T~GiLLr~l--~~----i~de~~~~l~~~~ 160 (764)
+|.++++++.+ +...+|-.|+.-.+..+. .+....|+++|++.+.+.+ .. |+||+|+.-.. .
T Consensus 322 LA~Q~~~~l~~-l~~~~~i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~~v~~~~l~lvVIDE~Hrfg~~-q 399 (681)
T PRK10917 322 LAEQHYENLKK-LLEPLGIRVALLTGSLKGKERREILEAIASGEADIVIGTHALIQDDVEFHNLGLVIIDEQHRFGVE-Q 399 (681)
T ss_pred HHHHHHHHHHH-HHhhcCcEEEEEcCCCCHHHHHHHHHHHhCCCCCEEEchHHHhcccchhcccceEEEechhhhhHH-H
Confidence 99999997764 444566677765554431 1235899999999887643 22 67898863110 0
Q ss_pred ccCCccCCCCceEEEeecccchhhhccccCCCCCCCeeee---CCcccceeEEecCCCchhhHHHHHHHHHHHHhhcCCC
Q 038192 161 CIEPKDRVFPLKLILMSATLRVEDFISGGRLFRNPPIIEV---PTRQFPVTVHFSKRTEIVDYIGQAYKKVMSIHKRLPQ 237 (764)
Q Consensus 161 ~~~~~~~~~~lKlILMSATl~~~~f~~~~~~f~~~~vi~i---~gr~~pV~~~y~~~~~~~d~l~~~~~~v~~i~~~~~~ 237 (764)
...+..+....++++||||.....+.. .+++...+..+ |....|++.++..... ....+..+.... ...
T Consensus 400 r~~l~~~~~~~~iL~~SATp~prtl~~--~~~g~~~~s~i~~~p~~r~~i~~~~~~~~~----~~~~~~~i~~~~--~~g 471 (681)
T PRK10917 400 RLALREKGENPHVLVMTATPIPRTLAM--TAYGDLDVSVIDELPPGRKPITTVVIPDSR----RDEVYERIREEI--AKG 471 (681)
T ss_pred HHHHHhcCCCCCEEEEeCCCCHHHHHH--HHcCCCceEEEecCCCCCCCcEEEEeCccc----HHHHHHHHHHHH--HcC
Confidence 001111223467999999986554432 24454333222 3334567766654322 112222222211 134
Q ss_pred CCeEEecCCHHHHHHHHHHHHHHHHHhhhhccccccCCccccCCCCCccccchhHHhHHHHHhhcCcccccccccCCCCC
Q 038192 238 GGILVFVTGQREVEYLCSKLRKASKQLLVNSSKENKGNQVVADSEPNATKDINMKEINEAFEIQGYSTEQQTDRFSSYDE 317 (764)
Q Consensus 238 g~ilvF~~g~~~ie~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~ 317 (764)
..++||++..++.+.+. +..
T Consensus 472 ~q~~v~~~~ie~s~~l~--~~~---------------------------------------------------------- 491 (681)
T PRK10917 472 RQAYVVCPLIEESEKLD--LQS---------------------------------------------------------- 491 (681)
T ss_pred CcEEEEEcccccccchh--HHH----------------------------------------------------------
Confidence 46788877543222110 000
Q ss_pred cccccCccccccccCccchhhhhhccchhhhhhhcCCCCCCCCcccccccchhhhhHHHHHHhhcCCCCCCCccccCCCC
Q 038192 318 DQFDIDDNELDALSDSETESETEILGEDEKLVEQKCPMDGDDPVDVLKENWSLGSLKLAFEVLSGKNASGPSSQMKLSTP 397 (764)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilvfl~g~~~i~~l~~~~~~l~~~~~~~~~~~~~~~~~ 397 (764)
.....+.|.
T Consensus 492 -------------------------------------------------------~~~~~~~L~---------------- 500 (681)
T PRK10917 492 -------------------------------------------------------AEETYEELQ---------------- 500 (681)
T ss_pred -------------------------------------------------------HHHHHHHHH----------------
Confidence 000000110
Q ss_pred CCCCcCCCCCCCCCCCCCCCCCCCccccccCcccCCCCCeEEEecCCCCCHHHHHhhhccCCCCceEEEEecCcccccCC
Q 038192 398 AIPEQCTELPPTPTPEQCPELSSPDVEKMGDNKRAGVGALCVLPLYAMLPAAAQLRVFEDVKEGERLVVVSTNVAETSLT 477 (764)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~pLHs~l~~~eQ~~vf~~~~~g~rKVIlsTNIAEtSIT 477 (764)
+.+ ..+.+..+||+|++++|.++++.|..|..+|+|||+++|.||+
T Consensus 501 -------------------------------~~~---~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT~vie~GiD 546 (681)
T PRK10917 501 -------------------------------EAF---PELRVGLLHGRMKPAEKDAVMAAFKAGEIDILVATTVIEVGVD 546 (681)
T ss_pred -------------------------------HHC---CCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEECcceeeCcc
Confidence 000 1257999999999999999999999999999999999999999
Q ss_pred CCCeEEEEeCCcccceeeccCCCccccceeeccHHhHHHhccccCCCCC-CEEEEccC
Q 038192 478 IPGIKYVVDTGREKVKKYNSANGIESYEIQWISKASAAQRAGRAGRTAP-GHCYRLYS 534 (764)
Q Consensus 478 IpdV~~VID~G~~K~~~yd~~~~~~~l~~~~iSkasa~QR~GRAGR~~~-G~cyrLys 534 (764)
||++.+||. ||+... +-+++.||+||+||.+. |.||-+++
T Consensus 547 ip~v~~VIi--------~~~~r~---------gls~lhQ~~GRvGR~g~~g~~ill~~ 587 (681)
T PRK10917 547 VPNATVMVI--------ENAERF---------GLAQLHQLRGRVGRGAAQSYCVLLYK 587 (681)
T ss_pred cCCCcEEEE--------eCCCCC---------CHHHHHHHhhcccCCCCceEEEEEEC
Confidence 999999996 665431 23566799999999885 99999986
No 50
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=99.90 E-value=4.5e-23 Score=242.52 Aligned_cols=113 Identities=19% Similarity=0.160 Sum_probs=75.3
Q ss_pred EecCCCCCHHHHH-----hhhccCCC----Cc-------eEEEEecCcccccCCCCCeEEEEeCCcccceeeccCCCccc
Q 038192 440 LPLYAMLPAAAQL-----RVFEDVKE----GE-------RLVVVSTNVAETSLTIPGIKYVVDTGREKVKKYNSANGIES 503 (764)
Q Consensus 440 ~pLHs~l~~~eQ~-----~vf~~~~~----g~-------rKVIlsTNIAEtSITIpdV~~VID~G~~K~~~yd~~~~~~~ 503 (764)
..|||.|++.+|. ++++.|.+ |. .+|+|||+++|+||+|+. .+||. |+
T Consensus 298 ~lLHG~m~q~dR~~~~~~~il~~Fk~~~~~g~~~~~~~g~~ILVATdVaerGLDId~-d~VI~--------d~------- 361 (844)
T TIGR02621 298 ELLTGTLRGAERDDLVKKEIFNRFLPQMLSGSRARPQQGTVYLVCTSAGEVGVNISA-DHLVC--------DL------- 361 (844)
T ss_pred eEeeCCCCHHHHhhHHHHHHHHHHhccccccccccccccceEEeccchhhhcccCCc-ceEEE--------CC-------
Confidence 6789999999999 77777765 43 689999999999999997 66663 22
Q ss_pred cceeeccHHhHHHhccccCCCCC-CEE-EEccCHHHhcccCCCCCCCcccccChhhHHHHHHHcCCCCCCCC
Q 038192 504 YEIQWISKASAAQRAGRAGRTAP-GHC-YRLYSSAVFNNILPDFSCAEISKVPVDGVVLLMKSMNIDKVSNF 573 (764)
Q Consensus 504 l~~~~iSkasa~QR~GRAGR~~~-G~c-yrLys~~~~~~~l~~~~~PEI~r~~L~~~~L~lk~l~~~~~~~f 573 (764)
....++.||.||+||.+. |.+ +.+++...-...-.....||+++..+..+.+..+..+..+...|
T Consensus 362 -----aP~esyIQRiGRtgR~G~~~~~~i~vv~~~~~~~~~~~vY~~~~l~~t~~~L~~~~~~~~~~~~~al 428 (844)
T TIGR02621 362 -----APFESMQQRFGRVNRFGELQACQIAVVHLDLGKDQDFDVYGKKIDKSTWSTLKKLQQLKGKNKRAAL 428 (844)
T ss_pred -----CCHHHHHHHhcccCCCCCCCCceEEEEeeccCCCcccCCCCHHHHHHHHHHHHHHHhccccCCHHHH
Confidence 123688999999999876 322 33332211000011223578888877777766665554444444
No 51
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=99.89 E-value=2.2e-22 Score=239.80 Aligned_cols=85 Identities=19% Similarity=0.246 Sum_probs=74.9
Q ss_pred eEEEecCCCCCHHHHHhhhccCCCCceEEEEecCcccccCCCCCeEEEEeCCcccceeeccCCCccccceeeccHHhHHH
Q 038192 437 LCVLPLYAMLPAAAQLRVFEDVKEGERLVVVSTNVAETSLTIPGIKYVVDTGREKVKKYNSANGIESYEIQWISKASAAQ 516 (764)
Q Consensus 437 ~~i~pLHs~l~~~eQ~~vf~~~~~g~rKVIlsTNIAEtSITIpdV~~VID~G~~K~~~yd~~~~~~~l~~~~iSkasa~Q 516 (764)
+.+.++||+|++++|..+++.|..|..+|||||+++++||++|||+|||+.++ +. |-.+|.|
T Consensus 705 ika~~YHAGLs~eeR~~vqe~F~~Gei~VLVATdAFGMGIDkPDVR~VIHydl--------Pk----------SiEsYyQ 766 (1195)
T PLN03137 705 HKAAFYHGSMDPAQRAFVQKQWSKDEINIICATVAFGMGINKPDVRFVIHHSL--------PK----------SIEGYHQ 766 (1195)
T ss_pred CCeeeeeCCCCHHHHHHHHHHHhcCCCcEEEEechhhcCCCccCCcEEEEcCC--------CC----------CHHHHHh
Confidence 45788999999999999999999999999999999999999999999998444 33 4456779
Q ss_pred hccccCCCCC-CEEEEccCHHHhc
Q 038192 517 RAGRAGRTAP-GHCYRLYSSAVFN 539 (764)
Q Consensus 517 R~GRAGR~~~-G~cyrLys~~~~~ 539 (764)
|+|||||-+. |.|+-+|+..++.
T Consensus 767 riGRAGRDG~~g~cILlys~~D~~ 790 (1195)
T PLN03137 767 ECGRAGRDGQRSSCVLYYSYSDYI 790 (1195)
T ss_pred hhcccCCCCCCceEEEEecHHHHH
Confidence 9999999884 9999999987663
No 52
>PRK10689 transcription-repair coupling factor; Provisional
Probab=99.89 E-value=1.5e-22 Score=249.05 Aligned_cols=304 Identities=16% Similarity=0.199 Sum_probs=190.5
Q ss_pred HHHhhhcCCC--chhhHHHHHHHHHcC------CeEEEEecCCCCccccHHHHHHHhccCCCCCCCCCceEEEecccHHH
Q 038192 26 EVENNRKDLP--IVMMEQEIMEAVNDN------SAVIICGETGCGKTTQVPQFLFEAGFGSNRCSSRSGRIGVTQPRRVA 97 (764)
Q Consensus 26 ~~~~~R~~LP--i~~~~~~Il~~l~~~------~vviI~GeTGSGKTTqvPq~Lle~~~~~~~~~~~~~~Ii~tQPRRia 97 (764)
...++..++| -...|.+.++.+... ..++++|+||||||...-..++... .. .++++|..|+|+.
T Consensus 589 ~~~~~~~~~~~~~T~~Q~~aI~~il~d~~~~~~~d~Ll~a~TGsGKT~val~aa~~~~-~~------g~qvlvLvPT~eL 661 (1147)
T PRK10689 589 QYQLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAV-EN------HKQVAVLVPTTLL 661 (1147)
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHhhcCCCCCEEEEcCCCcCHHHHHHHHHHHHH-Hc------CCeEEEEeCcHHH
Confidence 3444555554 223344455555443 5689999999999975433322221 11 2589999999999
Q ss_pred HHHHHHHHHHHhCCCCCCEeeEEeccCccc----------CCCceEEEEchHHHHHHH--HH----HHHHHHHHHhhccc
Q 038192 98 VLATAKRVAFELGLHLGKEVGFQVRHDKKI----------GDSCSIKFMTDGILLREL--KA----LYEKQQQLLRSGQC 161 (764)
Q Consensus 98 AisvA~RVa~E~g~~lG~~VGY~ir~e~~~----------s~~t~I~f~T~GiLLr~l--~~----i~de~~~~l~~~~~ 161 (764)
|.|+++.+.+.++ ..+-.|+.-.++.+.. ....+|+++|++.|-..+ .. |+||+|++ -....
T Consensus 662 A~Q~~~~f~~~~~-~~~v~i~~l~g~~s~~e~~~il~~l~~g~~dIVVgTp~lL~~~v~~~~L~lLVIDEahrf-G~~~~ 739 (1147)
T PRK10689 662 AQQHYDNFRDRFA-NWPVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGTHKLLQSDVKWKDLGLLIVDEEHRF-GVRHK 739 (1147)
T ss_pred HHHHHHHHHHhhc-cCCceEEEEECCCCHHHHHHHHHHHHhCCCCEEEECHHHHhCCCCHhhCCEEEEechhhc-chhHH
Confidence 9999997765443 3344555444443311 135789999998653322 22 56888874 11111
Q ss_pred cCCccCCCCceEEEeecccchhhhccccCCCCCCCeeeeCC-cccceeEEecCCCchhhHHHHHHHHHHHHhhcCCCCCe
Q 038192 162 IEPKDRVFPLKLILMSATLRVEDFISGGRLFRNPPIIEVPT-RQFPVTVHFSKRTEIVDYIGQAYKKVMSIHKRLPQGGI 240 (764)
Q Consensus 162 ~~~~~~~~~lKlILMSATl~~~~f~~~~~~f~~~~vi~i~g-r~~pV~~~y~~~~~~~d~l~~~~~~v~~i~~~~~~g~i 240 (764)
..+....++.++++||||+....+......+.++.+|..+. ...+|+.++.... ...+..+. ...+ ...|.+
T Consensus 740 e~lk~l~~~~qvLl~SATpiprtl~l~~~gl~d~~~I~~~p~~r~~v~~~~~~~~--~~~~k~~i--l~el---~r~gqv 812 (1147)
T PRK10689 740 ERIKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYD--SLVVREAI--LREI---LRGGQV 812 (1147)
T ss_pred HHHHhcCCCCcEEEEcCCCCHHHHHHHHhhCCCcEEEecCCCCCCCceEEEEecC--cHHHHHHH--HHHH---hcCCeE
Confidence 11122346789999999985432211112344566666543 3356765543211 11111111 1111 134678
Q ss_pred EEecCCHHHHHHHHHHHHHHHHHhhhhccccccCCccccCCCCCccccchhHHhHHHHHhhcCcccccccccCCCCCccc
Q 038192 241 LVFVTGQREVEYLCSKLRKASKQLLVNSSKENKGNQVVADSEPNATKDINMKEINEAFEIQGYSTEQQTDRFSSYDEDQF 320 (764)
Q Consensus 241 lvF~~g~~~ie~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~ 320 (764)
++|++..+.++.+++.|.+.
T Consensus 813 ~vf~n~i~~ie~la~~L~~~------------------------------------------------------------ 832 (1147)
T PRK10689 813 YYLYNDVENIQKAAERLAEL------------------------------------------------------------ 832 (1147)
T ss_pred EEEECCHHHHHHHHHHHHHh------------------------------------------------------------
Confidence 89998887777766655430
Q ss_pred ccCccccccccCccchhhhhhccchhhhhhhcCCCCCCCCcccccccchhhhhHHHHHHhhcCCCCCCCccccCCCCCCC
Q 038192 321 DIDDNELDALSDSETESETEILGEDEKLVEQKCPMDGDDPVDVLKENWSLGSLKLAFEVLSGKNASGPSSQMKLSTPAIP 400 (764)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilvfl~g~~~i~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~ 400 (764)
T Consensus 833 -------------------------------------------------------------------------------- 832 (1147)
T PRK10689 833 -------------------------------------------------------------------------------- 832 (1147)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CcCCCCCCCCCCCCCCCCCCCccccccCcccCCCCCeEEEecCCCCCHHHHHhhhccCCCCceEEEEecCcccccCCCCC
Q 038192 401 EQCTELPPTPTPEQCPELSSPDVEKMGDNKRAGVGALCVLPLYAMLPAAAQLRVFEDVKEGERLVVVSTNVAETSLTIPG 480 (764)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~pLHs~l~~~eQ~~vf~~~~~g~rKVIlsTNIAEtSITIpd 480 (764)
.+++.+..+||+|+++++.+++..|.+|+.+|+|||+|+|+||+||+
T Consensus 833 ---------------------------------~p~~~v~~lHG~m~q~eRe~im~~Fr~Gk~~VLVaTdIierGIDIP~ 879 (1147)
T PRK10689 833 ---------------------------------VPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPT 879 (1147)
T ss_pred ---------------------------------CCCCcEEEEeCCCCHHHHHHHHHHHHhcCCCEEEECchhhccccccc
Confidence 01245778899999999999999999999999999999999999999
Q ss_pred eEEEEeCCcccceeeccCCCccccceeeccHHhHHHhccccCCCCC-CEEEEccCH
Q 038192 481 IKYVVDTGREKVKKYNSANGIESYEIQWISKASAAQRAGRAGRTAP-GHCYRLYSS 535 (764)
Q Consensus 481 V~~VID~G~~K~~~yd~~~~~~~l~~~~iSkasa~QR~GRAGR~~~-G~cyrLys~ 535 (764)
|.+||- +++.+ -+-+++.||+||+||.+. |.||-+++.
T Consensus 880 v~~VIi--------~~ad~---------fglaq~~Qr~GRvGR~g~~g~a~ll~~~ 918 (1147)
T PRK10689 880 ANTIII--------ERADH---------FGLAQLHQLRGRVGRSHHQAYAWLLTPH 918 (1147)
T ss_pred CCEEEE--------ecCCC---------CCHHHHHHHhhccCCCCCceEEEEEeCC
Confidence 999992 22211 012457899999999886 999988754
No 53
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=99.89 E-value=2.1e-22 Score=237.44 Aligned_cols=82 Identities=24% Similarity=0.330 Sum_probs=72.0
Q ss_pred CeEEEecCCCCCHHHHHhhhccCCCCceEEEEecCcccccCCCCCeEEEEeCCcccceeeccCCCccccceeeccHHhHH
Q 038192 436 ALCVLPLYAMLPAAAQLRVFEDVKEGERLVVVSTNVAETSLTIPGIKYVVDTGREKVKKYNSANGIESYEIQWISKASAA 515 (764)
Q Consensus 436 ~~~i~pLHs~l~~~eQ~~vf~~~~~g~rKVIlsTNIAEtSITIpdV~~VID~G~~K~~~yd~~~~~~~l~~~~iSkasa~ 515 (764)
++.+..+||+|++++|.++++.|..|..+|+|||+++|+||+||++++||. ||+... +-+++.
T Consensus 482 ~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT~vie~GvDiP~v~~VIi--------~~~~r~---------gls~lh 544 (630)
T TIGR00643 482 KYNVGLLHGRMKSDEKEAVMEEFREGEVDILVATTVIEVGVDVPNATVMVI--------EDAERF---------GLSQLH 544 (630)
T ss_pred CCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEECceeecCcccCCCcEEEE--------eCCCcC---------CHHHHH
Confidence 467999999999999999999999999999999999999999999999995 565431 235677
Q ss_pred HhccccCCCC-CCEEEEccC
Q 038192 516 QRAGRAGRTA-PGHCYRLYS 534 (764)
Q Consensus 516 QR~GRAGR~~-~G~cyrLys 534 (764)
||+|||||.+ +|.||-++.
T Consensus 545 Q~~GRvGR~g~~g~~il~~~ 564 (630)
T TIGR00643 545 QLRGRVGRGDHQSYCLLVYK 564 (630)
T ss_pred HHhhhcccCCCCcEEEEEEC
Confidence 9999999987 499999983
No 54
>PRK13767 ATP-dependent helicase; Provisional
Probab=99.89 E-value=3.9e-22 Score=242.40 Aligned_cols=366 Identities=19% Similarity=0.171 Sum_probs=215.6
Q ss_pred hhHHHHHHHHHcCCeEEEEecCCCCccccHHHHHHHhccCCC--CCCCCCceEEEecccHHHHHHHHHHHH---------
Q 038192 38 MMEQEIMEAVNDNSAVIICGETGCGKTTQVPQFLFEAGFGSN--RCSSRSGRIGVTQPRRVAVLATAKRVA--------- 106 (764)
Q Consensus 38 ~~~~~Il~~l~~~~vviI~GeTGSGKTTqvPq~Lle~~~~~~--~~~~~~~~Ii~tQPRRiaAisvA~RVa--------- 106 (764)
..|.+.++.+.+++.++|+++||||||......+++...... ......+++++..|+|.+|.++.+++.
T Consensus 35 piQ~~Ai~~il~g~nvli~APTGSGKTlaa~Lpil~~l~~~~~~~~~~~~~~~LyIsPtraLa~di~~~L~~~l~~i~~~ 114 (876)
T PRK13767 35 PPQRYAIPLIHEGKNVLISSPTGSGKTLAAFLAIIDELFRLGREGELEDKVYCLYVSPLRALNNDIHRNLEEPLTEIREI 114 (876)
T ss_pred HHHHHHHHHHHcCCCEEEECCCCCcHHHHHHHHHHHHHHhhccccCCCCCeEEEEEcCHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556677778888999999999999987666665432211 000123578888899999999877543
Q ss_pred -HHhCCCC-CCEeeEEeccCc------ccCCCceEEEEchHHHHHHHHH-------------HHHHHHHHHhhcc-----
Q 038192 107 -FELGLHL-GKEVGFQVRHDK------KIGDSCSIKFMTDGILLRELKA-------------LYEKQQQLLRSGQ----- 160 (764)
Q Consensus 107 -~E~g~~l-G~~VGY~ir~e~------~~s~~t~I~f~T~GiLLr~l~~-------------i~de~~~~l~~~~----- 160 (764)
.++|..+ +-.|+-.....+ ......+|+++||+.|...+.. |+||+|.++....
T Consensus 115 ~~~~g~~~~~i~v~v~~Gdt~~~~r~~~l~~~p~IlVtTPE~L~~ll~~~~~~~~l~~l~~VVIDE~H~l~~~~RG~~l~ 194 (876)
T PRK13767 115 AKERGEELPEIRVAIRTGDTSSYEKQKMLKKPPHILITTPESLAILLNSPKFREKLRTVKWVIVDEIHSLAENKRGVHLS 194 (876)
T ss_pred HHhcCCCcCCeeEEEEcCCCCHHHHHHHHhCCCCEEEecHHHHHHHhcChhHHHHHhcCCEEEEechhhhccCccHHHHH
Confidence 3334444 323332221111 1123568999999998755521 5689887653211
Q ss_pred --ccCCccC-CCCceEEEeeccc-chhhhccccCCCCC-------CCeeeeCC---cccceeEEecC-C---CchhhHHH
Q 038192 161 --CIEPKDR-VFPLKLILMSATL-RVEDFISGGRLFRN-------PPIIEVPT---RQFPVTVHFSK-R---TEIVDYIG 222 (764)
Q Consensus 161 --~~~~~~~-~~~lKlILMSATl-~~~~f~~~~~~f~~-------~~vi~i~g---r~~pV~~~y~~-~---~~~~d~l~ 222 (764)
+..+... .++++.|++|||+ +.+.+.. ++.+ .++.-+.+ +.+++.+.... + ........
T Consensus 195 ~~L~rL~~l~~~~~q~IglSATl~~~~~va~---~L~~~~~~~~~r~~~iv~~~~~k~~~i~v~~p~~~l~~~~~~~~~~ 271 (876)
T PRK13767 195 LSLERLEELAGGEFVRIGLSATIEPLEEVAK---FLVGYEDDGEPRDCEIVDARFVKPFDIKVISPVDDLIHTPAEEISE 271 (876)
T ss_pred HHHHHHHHhcCCCCeEEEEecccCCHHHHHH---HhcCccccCCCCceEEEccCCCccceEEEeccCccccccccchhHH
Confidence 0011111 2578999999999 4444442 2221 12222222 22333222110 0 00011111
Q ss_pred HHHHHHHHHhhcCCCCCeEEecCCHHHHHHHHHHHHHHHHHhhhhccccccCCccccCCCCCccccchhHHhHHHHHhhc
Q 038192 223 QAYKKVMSIHKRLPQGGILVFVTGQREVEYLCSKLRKASKQLLVNSSKENKGNQVVADSEPNATKDINMKEINEAFEIQG 302 (764)
Q Consensus 223 ~~~~~v~~i~~~~~~g~ilvF~~g~~~ie~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (764)
..+..+.++.. ..+.+|||+++...++.++..|++...+
T Consensus 272 ~l~~~L~~~i~--~~~~~LVF~nTr~~ae~la~~L~~~~~~--------------------------------------- 310 (876)
T PRK13767 272 ALYETLHELIK--EHRTTLIFTNTRSGAERVLYNLRKRFPE--------------------------------------- 310 (876)
T ss_pred HHHHHHHHHHh--cCCCEEEEeCCHHHHHHHHHHHHHhchh---------------------------------------
Confidence 12222222211 2457899999999888887777541000
Q ss_pred CcccccccccCCCCCcccccCccccccccCccchhhhhhccchhhhhhhcCCCCCCCCcccccccchhhhhHHHHHHhhc
Q 038192 303 YSTEQQTDRFSSYDEDQFDIDDNELDALSDSETESETEILGEDEKLVEQKCPMDGDDPVDVLKENWSLGSLKLAFEVLSG 382 (764)
Q Consensus 303 ~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilvfl~g~~~i~~l~~~~~~l~~ 382 (764)
T Consensus 311 -------------------------------------------------------------------------------- 310 (876)
T PRK13767 311 -------------------------------------------------------------------------------- 310 (876)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCccccCCCCCCCCcCCCCCCCCCCCCCCCCCCCccccccCcccCCCCCeEEEecCCCCCHHHHHhhhccCCCCc
Q 038192 383 KNASGPSSQMKLSTPAIPEQCTELPPTPTPEQCPELSSPDVEKMGDNKRAGVGALCVLPLYAMLPAAAQLRVFEDVKEGE 462 (764)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~pLHs~l~~~eQ~~vf~~~~~g~ 462 (764)
......+..+||+|+.++|..+.+.+++|.
T Consensus 311 --------------------------------------------------~~~~~~i~~hHg~ls~~~R~~ve~~fk~G~ 340 (876)
T PRK13767 311 --------------------------------------------------EYDEDNIGAHHSSLSREVRLEVEEKLKRGE 340 (876)
T ss_pred --------------------------------------------------hccccceeeeeCCCCHHHHHHHHHHHHcCC
Confidence 001234778999999999999999999999
Q ss_pred eEEEEecCcccccCCCCCeEEEEeCCcccceeeccCCCccccceeeccHHhHHHhccccCCCC----CCEEEEccCHHHh
Q 038192 463 RLVVVSTNVAETSLTIPGIKYVVDTGREKVKKYNSANGIESYEIQWISKASAAQRAGRAGRTA----PGHCYRLYSSAVF 538 (764)
Q Consensus 463 rKVIlsTNIAEtSITIpdV~~VID~G~~K~~~yd~~~~~~~l~~~~iSkasa~QR~GRAGR~~----~G~cyrLys~~~~ 538 (764)
.+||+||+++|.||+||+|.+||. |+++ -|.+++.||+|||||-. .|.+|-+...+..
T Consensus 341 i~vLVaTs~Le~GIDip~Vd~VI~--------~~~P----------~sv~~ylQRiGRaGR~~g~~~~g~ii~~~~~~l~ 402 (876)
T PRK13767 341 LKVVVSSTSLELGIDIGYIDLVVL--------LGSP----------KSVSRLLQRIGRAGHRLGEVSKGRIIVVDRDDLV 402 (876)
T ss_pred CeEEEECChHHhcCCCCCCcEEEE--------eCCC----------CCHHHHHHhcccCCCCCCCCCcEEEEEcCchhHH
Confidence 999999999999999999999996 4433 46788889999999862 3888875443211
Q ss_pred c------ccCC-CCCCCcccccChhhHHHHHHHcCCCCCC-----------CCCCCCCCCHHHHHHHHHHHHHccc
Q 038192 539 N------NILP-DFSCAEISKVPVDGVVLLMKSMNIDKVS-----------NFPFPTPPEVTALVEAERCLKALEA 596 (764)
Q Consensus 539 ~------~~l~-~~~~PEI~r~~L~~~~L~lk~l~~~~~~-----------~f~~~~pP~~~~i~~ai~~L~~lgA 596 (764)
+ .... ......+...|++-++-|+.++-..... .++|-+- +.+.+...+++|..-++
T Consensus 403 e~~~~~~~~~~~~ie~~~~~~~~~dvl~q~i~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~l~~l~~~~~ 477 (876)
T PRK13767 403 ECAVLLKKAREGKIDRVHIPKNPLDVLAQHIVGMAIERPWDIEEAYNIVRRAYPYRDL-SDEDFESVLRYLAGDYG 477 (876)
T ss_pred HHHHHHHHHHhCCCCCCCCCCCcHHHHHHHHHHHHHcCCCCHHHHHHHHhccCCcccC-CHHHHHHHHHHHhccCc
Confidence 1 1011 1112234445666666666655433211 1223221 34677778888866543
No 55
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=99.89 E-value=2.5e-22 Score=242.30 Aligned_cols=293 Identities=19% Similarity=0.249 Sum_probs=188.2
Q ss_pred hhHHHHHHHHHcC------CeEEEEecCCCCccccHHHHHHHhccCCCCCCCCCceEEEecccHHHHHHHHHHHHHHhCC
Q 038192 38 MMEQEIMEAVNDN------SAVIICGETGCGKTTQVPQFLFEAGFGSNRCSSRSGRIGVTQPRRVAVLATAKRVAFELGL 111 (764)
Q Consensus 38 ~~~~~Il~~l~~~------~vviI~GeTGSGKTTqvPq~Lle~~~~~~~~~~~~~~Ii~tQPRRiaAisvA~RVa~E~g~ 111 (764)
..|...++.+.+. ..++|+|+||||||...-..++..... + .++++..|++++|.|+++.+.+.+ .
T Consensus 454 ~~Q~~aI~~I~~d~~~~~~~d~Ll~adTGsGKT~val~a~l~al~~-g------~qvlvLvPT~~LA~Q~~~~f~~~~-~ 525 (926)
T TIGR00580 454 PDQLKAIEEIKADMESPRPMDRLVCGDVGFGKTEVAMRAAFKAVLD-G------KQVAVLVPTTLLAQQHFETFKERF-A 525 (926)
T ss_pred HHHHHHHHHHHhhhcccCcCCEEEECCCCccHHHHHHHHHHHHHHh-C------CeEEEEeCcHHHHHHHHHHHHHHh-c
Confidence 4445555555442 457999999999997655555544321 1 589999999999999999776544 3
Q ss_pred CCCCEeeEEeccCcc----------cCCCceEEEEchHHHHHHH--HH----HHHHHHHHHhhccccCCccCCCCceEEE
Q 038192 112 HLGKEVGFQVRHDKK----------IGDSCSIKFMTDGILLREL--KA----LYEKQQQLLRSGQCIEPKDRVFPLKLIL 175 (764)
Q Consensus 112 ~lG~~VGY~ir~e~~----------~s~~t~I~f~T~GiLLr~l--~~----i~de~~~~l~~~~~~~~~~~~~~lKlIL 175 (764)
..+-.|+.-.++-+. ...+.+|+++|+..+-+.+ .. |+||+|+.- ......+....++.++++
T Consensus 526 ~~~i~v~~Lsg~~~~~e~~~~~~~l~~g~~dIVIGTp~ll~~~v~f~~L~llVIDEahrfg-v~~~~~L~~~~~~~~vL~ 604 (926)
T TIGR00580 526 NFPVTIELLSRFRSAKEQNEILKELASGKIDILIGTHKLLQKDVKFKDLGLLIIDEEQRFG-VKQKEKLKELRTSVDVLT 604 (926)
T ss_pred cCCcEEEEEeccccHHHHHHHHHHHHcCCceEEEchHHHhhCCCCcccCCEEEeecccccc-hhHHHHHHhcCCCCCEEE
Confidence 445555543333221 1225789999996543222 11 568887631 011111112335688999
Q ss_pred eecccchhhhccccCCCCCCCeeeeC-CcccceeEEecCCCchhhHHHHHHHHHHHHhhcCCCCCeEEecCCHHHHHHHH
Q 038192 176 MSATLRVEDFISGGRLFRNPPIIEVP-TRQFPVTVHFSKRTEIVDYIGQAYKKVMSIHKRLPQGGILVFVTGQREVEYLC 254 (764)
Q Consensus 176 MSATl~~~~f~~~~~~f~~~~vi~i~-gr~~pV~~~y~~~~~~~d~l~~~~~~v~~i~~~~~~g~ilvF~~g~~~ie~l~ 254 (764)
||||+....+........+..+|..+ ....||+.++.... ...+..+ +.... ...+.+++|++..+.++.++
T Consensus 605 ~SATpiprtl~~~l~g~~d~s~I~~~p~~R~~V~t~v~~~~--~~~i~~~---i~~el--~~g~qv~if~n~i~~~e~l~ 677 (926)
T TIGR00580 605 LSATPIPRTLHMSMSGIRDLSIIATPPEDRLPVRTFVMEYD--PELVREA---IRREL--LRGGQVFYVHNRIESIEKLA 677 (926)
T ss_pred EecCCCHHHHHHHHhcCCCcEEEecCCCCccceEEEEEecC--HHHHHHH---HHHHH--HcCCeEEEEECCcHHHHHHH
Confidence 99998655443210122334455543 33567877664321 1111111 11111 13467888888877777665
Q ss_pred HHHHHHHHHhhhhccccccCCccccCCCCCccccchhHHhHHHHHhhcCcccccccccCCCCCcccccCccccccccCcc
Q 038192 255 SKLRKASKQLLVNSSKENKGNQVVADSEPNATKDINMKEINEAFEIQGYSTEQQTDRFSSYDEDQFDIDDNELDALSDSE 334 (764)
Q Consensus 255 ~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (764)
+.|++.
T Consensus 678 ~~L~~~-------------------------------------------------------------------------- 683 (926)
T TIGR00580 678 TQLREL-------------------------------------------------------------------------- 683 (926)
T ss_pred HHHHHh--------------------------------------------------------------------------
Confidence 555320
Q ss_pred chhhhhhccchhhhhhhcCCCCCCCCcccccccchhhhhHHHHHHhhcCCCCCCCccccCCCCCCCCcCCCCCCCCCCCC
Q 038192 335 TESETEILGEDEKLVEQKCPMDGDDPVDVLKENWSLGSLKLAFEVLSGKNASGPSSQMKLSTPAIPEQCTELPPTPTPEQ 414 (764)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~ilvfl~g~~~i~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 414 (764)
T Consensus 684 -------------------------------------------------------------------------------- 683 (926)
T TIGR00580 684 -------------------------------------------------------------------------------- 683 (926)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCccccccCcccCCCCCeEEEecCCCCCHHHHHhhhccCCCCceEEEEecCcccccCCCCCeEEEEeCCccccee
Q 038192 415 CPELSSPDVEKMGDNKRAGVGALCVLPLYAMLPAAAQLRVFEDVKEGERLVVVSTNVAETSLTIPGIKYVVDTGREKVKK 494 (764)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~~~~~~~i~pLHs~l~~~eQ~~vf~~~~~g~rKVIlsTNIAEtSITIpdV~~VID~G~~K~~~ 494 (764)
.+++.+..+||+|++.++.++++.|.+|+.+|+|||+|+|+||+||+|.+||.
T Consensus 684 -------------------~p~~~v~~lHG~m~~~eRe~im~~F~~Gk~~ILVaT~iie~GIDIp~v~~VIi-------- 736 (926)
T TIGR00580 684 -------------------VPEARIAIAHGQMTENELEEVMLEFYKGEFQVLVCTTIIETGIDIPNANTIII-------- 736 (926)
T ss_pred -------------------CCCCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEECChhhcccccccCCEEEE--------
Confidence 02356889999999999999999999999999999999999999999999995
Q ss_pred eccCCCccccceeeccHHhHHHhccccCCCCC-CEEEEccCHH
Q 038192 495 YNSANGIESYEIQWISKASAAQRAGRAGRTAP-GHCYRLYSSA 536 (764)
Q Consensus 495 yd~~~~~~~l~~~~iSkasa~QR~GRAGR~~~-G~cyrLys~~ 536 (764)
||+... +-+++.||+||+||.+. |.||-|++..
T Consensus 737 ~~a~~~---------gls~l~Qr~GRvGR~g~~g~aill~~~~ 770 (926)
T TIGR00580 737 ERADKF---------GLAQLYQLRGRVGRSKKKAYAYLLYPHQ 770 (926)
T ss_pred ecCCCC---------CHHHHHHHhcCCCCCCCCeEEEEEECCc
Confidence 554321 12356699999999885 9999998763
No 56
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=99.87 E-value=1e-21 Score=230.75 Aligned_cols=84 Identities=30% Similarity=0.390 Sum_probs=74.1
Q ss_pred eEEEecCCCCCHHHHHhhhccCCCCceEEEEecCcccccCCCCCeEEEEeCCcccceeeccCCCccccceeeccHHhHHH
Q 038192 437 LCVLPLYAMLPAAAQLRVFEDVKEGERLVVVSTNVAETSLTIPGIKYVVDTGREKVKKYNSANGIESYEIQWISKASAAQ 516 (764)
Q Consensus 437 ~~i~pLHs~l~~~eQ~~vf~~~~~g~rKVIlsTNIAEtSITIpdV~~VID~G~~K~~~yd~~~~~~~l~~~~iSkasa~Q 516 (764)
+.+.++||+|+.++|..+.+.|..|..+|||||+.++.||++|||++||+ ||.+ -|..++.|
T Consensus 249 ~~~~~~H~~l~~~~R~~i~~~F~~g~~~vlVaT~a~~~GID~p~v~~VI~--------~~~p----------~s~~~y~Q 310 (591)
T TIGR01389 249 ISALAYHAGLSNKVRAENQEDFLYDDVKVMVATNAFGMGIDKPNVRFVIH--------YDMP----------GNLESYYQ 310 (591)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEechhhccCcCCCCCEEEE--------cCCC----------CCHHHHhh
Confidence 44778999999999999999999999999999999999999999999997 4433 34567789
Q ss_pred hccccCCCC-CCEEEEccCHHHh
Q 038192 517 RAGRAGRTA-PGHCYRLYSSAVF 538 (764)
Q Consensus 517 R~GRAGR~~-~G~cyrLys~~~~ 538 (764)
|+|||||.+ +|.|+-+|+..++
T Consensus 311 ~~GRaGR~G~~~~~il~~~~~d~ 333 (591)
T TIGR01389 311 EAGRAGRDGLPAEAILLYSPADI 333 (591)
T ss_pred hhccccCCCCCceEEEecCHHHH
Confidence 999999988 5999999998765
No 57
>KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.84 E-value=2.1e-20 Score=201.79 Aligned_cols=78 Identities=18% Similarity=0.402 Sum_probs=70.7
Q ss_pred cCCCCCHHHHHhhhccCCCCceEEEEecCcccccCCCCCeEEEEeCCcccceeeccCCCccccceeeccHHhHHHhcccc
Q 038192 442 LYAMLPAAAQLRVFEDVKEGERLVVVSTNVAETSLTIPGIKYVVDTGREKVKKYNSANGIESYEIQWISKASAAQRAGRA 521 (764)
Q Consensus 442 LHs~l~~~eQ~~vf~~~~~g~rKVIlsTNIAEtSITIpdV~~VID~G~~K~~~yd~~~~~~~l~~~~iSkasa~QR~GRA 521 (764)
+-|+++.+.+.+....|..|...|++|||+..|||+|.||..||| ||++.....|+ ||+||+
T Consensus 463 ~t~~l~~k~r~k~l~~f~~g~i~vLIcSD~laRGiDv~~v~~VIN--------Yd~P~~~ktyV----------HR~GRT 524 (620)
T KOG0350|consen 463 FTGQLNGKRRYKMLEKFAKGDINVLICSDALARGIDVNDVDNVIN--------YDPPASDKTYV----------HRAGRT 524 (620)
T ss_pred hhhhhhHHHHHHHHHHHhcCCceEEEehhhhhcCCcccccceEee--------cCCCchhhHHH----------Hhhccc
Confidence 567889999999999999999999999999999999999999998 99887666555 999999
Q ss_pred CCCCC-CEEEEccCHHH
Q 038192 522 GRTAP-GHCYRLYSSAV 537 (764)
Q Consensus 522 GR~~~-G~cyrLys~~~ 537 (764)
||.|. |.||.|.+...
T Consensus 525 ARAgq~G~a~tll~~~~ 541 (620)
T KOG0350|consen 525 ARAGQDGYAITLLDKHE 541 (620)
T ss_pred ccccCCceEEEeecccc
Confidence 99997 99999988753
No 58
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=99.83 E-value=8.7e-20 Score=226.02 Aligned_cols=74 Identities=24% Similarity=0.275 Sum_probs=66.1
Q ss_pred eEEEecCCCCCHHHHHhhhccCCCCceEEEEecCcccccCCCCCeEEEEeCCcccceeeccCCCccccceeeccHHhHHH
Q 038192 437 LCVLPLYAMLPAAAQLRVFEDVKEGERLVVVSTNVAETSLTIPGIKYVVDTGREKVKKYNSANGIESYEIQWISKASAAQ 516 (764)
Q Consensus 437 ~~i~pLHs~l~~~eQ~~vf~~~~~g~rKVIlsTNIAEtSITIpdV~~VID~G~~K~~~yd~~~~~~~l~~~~iSkasa~Q 516 (764)
+.+..+||+|+.++|..+.+.+++|..||||||+.+|.||+|++|.+||+ |+ .|.|.+++.|
T Consensus 302 ~ia~~HHGsLSkeeR~~IE~~fK~G~LrvLVATssLELGIDIg~VDlVIq--------~g----------sP~sVas~LQ 363 (1490)
T PRK09751 302 FIARSHHGSVSKEQRAITEQALKSGELRCVVATSSLELGIDMGAVDLVIQ--------VA----------TPLSVASGLQ 363 (1490)
T ss_pred eeeeeccccCCHHHHHHHHHHHHhCCceEEEeCcHHHccCCcccCCEEEE--------eC----------CCCCHHHHHH
Confidence 45788999999999999999999999999999999999999999999997 43 2667899999
Q ss_pred hccccCCCCCCE
Q 038192 517 RAGRAGRTAPGH 528 (764)
Q Consensus 517 R~GRAGR~~~G~ 528 (764)
|.|||||...|+
T Consensus 364 RiGRAGR~~gg~ 375 (1490)
T PRK09751 364 RIGRAGHQVGGV 375 (1490)
T ss_pred HhCCCCCCCCCc
Confidence 999999974443
No 59
>KOG0327 consensus Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases [Translation, ribosomal structure and biogenesis]
Probab=99.83 E-value=2.3e-20 Score=197.11 Aligned_cols=299 Identities=18% Similarity=0.277 Sum_probs=209.1
Q ss_pred CCCchhhHHHHHHHHHcCCeEEEEecCCCCccccHHHHHHHhccCCCCCCCCCceEEEecccHHHHHHHHHHHHHHhCCC
Q 038192 33 DLPIVMMEQEIMEAVNDNSAVIICGETGCGKTTQVPQFLFEAGFGSNRCSSRSGRIGVTQPRRVAVLATAKRVAFELGLH 112 (764)
Q Consensus 33 ~LPi~~~~~~Il~~l~~~~vviI~GeTGSGKTTqvPq~Lle~~~~~~~~~~~~~~Ii~tQPRRiaAisvA~RVa~E~g~~ 112 (764)
.-|...++..|+..+...+ +++++.+|+|||..+-..++...-...+ .+.+++.-|+|..|.++. .|....|..
T Consensus 47 ekPSaIQqraI~p~i~G~d-v~~qaqsgTgKt~af~i~iLq~iD~~~k----e~qalilaPtreLa~qi~-~v~~~lg~~ 120 (397)
T KOG0327|consen 47 EKPSAIQQRAILPCIKGHD-VIAQAQSGTGKTAAFLISILQQIDMSVK----ETQALILAPTRELAQQIQ-KVVRALGDH 120 (397)
T ss_pred CCchHHHhccccccccCCc-eeEeeeccccchhhhHHHHHhhcCcchH----HHHHHHhcchHHHHHHHH-HHHHhhhcc
Confidence 4577777788888887766 7999999999998866666665322221 368889999999999988 466666665
Q ss_pred CCCEeeEEeccCc------ccC-CCceEEEEchHHHHHHHHH-----------HHHHHHHHHhhccccCCc----cCCCC
Q 038192 113 LGKEVGFQVRHDK------KIG-DSCSIKFMTDGILLRELKA-----------LYEKQQQLLRSGQCIEPK----DRVFP 170 (764)
Q Consensus 113 lG~~VGY~ir~e~------~~s-~~t~I~f~T~GiLLr~l~~-----------i~de~~~~l~~~~~~~~~----~~~~~ 170 (764)
.+..|---+++.+ ... ....|++.|||+.+.+++. ++||+++|+..|+...+. ...++
T Consensus 121 ~~~~v~~~igg~~~~~~~~~i~~~~~hivvGTpgrV~dml~~~~l~~~~iKmfvlDEaDEmLs~gfkdqI~~if~~lp~~ 200 (397)
T KOG0327|consen 121 MDVSVHACIGGTNVRREDQALLKDKPHIVVGTPGRVFDMLNRGSLSTDGIKMFVLDEADEMLSRGFKDQIYDIFQELPSD 200 (397)
T ss_pred cceeeeeecCcccchhhhhhhhccCceeecCCchhHHHhhccccccccceeEEeecchHhhhccchHHHHHHHHHHcCcc
Confidence 5433322222222 222 3478999999999999943 579999999888754332 23467
Q ss_pred ceEEEeecccchhh--hccccCCCCCCCeeeeCCccc---ceeEEecCCCchhhHHHHHHHHHHHHhhcCCCCCeEEecC
Q 038192 171 LKLILMSATLRVED--FISGGRLFRNPPIIEVPTRQF---PVTVHFSKRTEIVDYIGQAYKKVMSIHKRLPQGGILVFVT 245 (764)
Q Consensus 171 lKlILMSATl~~~~--f~~~~~~f~~~~vi~i~gr~~---pV~~~y~~~~~~~d~l~~~~~~v~~i~~~~~~g~ilvF~~ 245 (764)
.+++|+|||+..+. .+. +|..++-.|.+.-..- -++.+|..... +. .+...++++. ...+.++|++
T Consensus 201 vQv~l~SAT~p~~vl~vt~--~f~~~pv~i~vkk~~ltl~gikq~~i~v~k-~~----k~~~l~dl~~--~~~q~~if~n 271 (397)
T KOG0327|consen 201 VQVVLLSATMPSDVLEVTK--KFMREPVRILVKKDELTLEGIKQFYINVEK-EE----KLDTLCDLYR--RVTQAVIFCN 271 (397)
T ss_pred hhheeecccCcHHHHHHHH--HhccCceEEEecchhhhhhheeeeeeeccc-cc----cccHHHHHHH--hhhcceEEec
Confidence 89999999995543 332 3444444444432110 01112211100 11 3334455555 3456678888
Q ss_pred CHHHHHHHHHHHHHHHHHhhhhccccccCCccccCCCCCccccchhHHhHHHHHhhcCcccccccccCCCCCcccccCcc
Q 038192 246 GQREVEYLCSKLRKASKQLLVNSSKENKGNQVVADSEPNATKDINMKEINEAFEIQGYSTEQQTDRFSSYDEDQFDIDDN 325 (764)
Q Consensus 246 g~~~ie~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~ 325 (764)
+.+.+.++..+|..
T Consensus 272 t~r~v~~l~~~L~~------------------------------------------------------------------ 285 (397)
T KOG0327|consen 272 TRRKVDNLTDKLRA------------------------------------------------------------------ 285 (397)
T ss_pred chhhHHHHHHHHhh------------------------------------------------------------------
Confidence 87777666554421
Q ss_pred ccccccCccchhhhhhccchhhhhhhcCCCCCCCCcccccccchhhhhHHHHHHhhcCCCCCCCccccCCCCCCCCcCCC
Q 038192 326 ELDALSDSETESETEILGEDEKLVEQKCPMDGDDPVDVLKENWSLGSLKLAFEVLSGKNASGPSSQMKLSTPAIPEQCTE 405 (764)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilvfl~g~~~i~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (764)
T Consensus 286 -------------------------------------------------------------------------------- 285 (397)
T KOG0327|consen 286 -------------------------------------------------------------------------------- 285 (397)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCCCCCCCCCccccccCcccCCCCCeEEEecCCCCCHHHHHhhhccCCCCceEEEEecCcccccCCCCCeEEEE
Q 038192 406 LPPTPTPEQCPELSSPDVEKMGDNKRAGVGALCVLPLYAMLPAAAQLRVFEDVKEGERLVVVSTNVAETSLTIPGIKYVV 485 (764)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~pLHs~l~~~eQ~~vf~~~~~g~rKVIlsTNIAEtSITIpdV~~VI 485 (764)
.++++..+|+.|.+.+|..+...|..|.-+|+++|+.+.+||+|-++..||
T Consensus 286 -----------------------------~~~~~s~~~~d~~q~~R~~~~~ef~~gssrvlIttdl~argidv~~~slvi 336 (397)
T KOG0327|consen 286 -----------------------------HGFTVSAIHGDMEQNERDTLMREFRSGSSRVLITTDLLARGIDVQQVSLVV 336 (397)
T ss_pred -----------------------------CCceEEEeecccchhhhhHHHHHhhcCCceEEeeccccccccchhhcceee
Confidence 246788889999999999999999999999999999999999999999999
Q ss_pred eCCcccceeeccCCCccccceeeccHHhHHHhccccCCCCC-CEEEEccCHHHhc
Q 038192 486 DTGREKVKKYNSANGIESYEIQWISKASAAQRAGRAGRTAP-GHCYRLYSSAVFN 539 (764)
Q Consensus 486 D~G~~K~~~yd~~~~~~~l~~~~iSkasa~QR~GRAGR~~~-G~cyrLys~~~~~ 539 (764)
+ ||.+.+ +.+|.||+||+||.+- |....+.+..+-.
T Consensus 337 n--------ydlP~~----------~~~yihR~gr~gr~grkg~~in~v~~~d~~ 373 (397)
T KOG0327|consen 337 N--------YDLPAR----------KENYIHRIGRAGRFGRKGVAINFVTEEDVR 373 (397)
T ss_pred e--------eccccc----------hhhhhhhcccccccCCCceeeeeehHhhHH
Confidence 8 775544 6777899999999986 9999999987654
No 60
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=99.82 E-value=3.5e-19 Score=196.58 Aligned_cols=59 Identities=15% Similarity=0.223 Sum_probs=47.8
Q ss_pred eEEEecCCCCCHHHHHhhhccCCCCceEEEEecCcccccCCCCCeEEEEeCCcccceeeccCCCccccceeeccHHhHHH
Q 038192 437 LCVLPLYAMLPAAAQLRVFEDVKEGERLVVVSTNVAETSLTIPGIKYVVDTGREKVKKYNSANGIESYEIQWISKASAAQ 516 (764)
Q Consensus 437 ~~i~pLHs~l~~~eQ~~vf~~~~~g~rKVIlsTNIAEtSITIpdV~~VID~G~~K~~~yd~~~~~~~l~~~~iSkasa~Q 516 (764)
+.+..+||.+++.+|.++. ...|+|||++||+||+||++ +|| |+ +.+.+++.|
T Consensus 299 ~~~~~l~g~~~~~~R~~~~------~~~iLVaTdv~~rGiDi~~~-~vi---------~~-----------p~~~~~yiq 351 (357)
T TIGR03158 299 DDIGRITGFAPKKDRERAM------QFDILLGTSTVDVGVDFKRD-WLI---------FS-----------ARDAAAFWQ 351 (357)
T ss_pred ceEEeeecCCCHHHHHHhc------cCCEEEEecHHhcccCCCCc-eEE---------EC-----------CCCHHHHhh
Confidence 4577899999999988765 45799999999999999987 566 22 235678889
Q ss_pred hccccC
Q 038192 517 RAGRAG 522 (764)
Q Consensus 517 R~GRAG 522 (764)
|+||+|
T Consensus 352 R~GR~g 357 (357)
T TIGR03158 352 RLGRLG 357 (357)
T ss_pred hcccCC
Confidence 999998
No 61
>KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification]
Probab=99.82 E-value=2.7e-20 Score=195.02 Aligned_cols=84 Identities=21% Similarity=0.366 Sum_probs=74.2
Q ss_pred CCeEEEecCCCCCHHHHHhhhccCCCCceEEEEecCcccccCCCCCeEEEEeCCcccceeeccCCCccccceeeccHHhH
Q 038192 435 GALCVLPLYAMLPAAAQLRVFEDVKEGERLVVVSTNVAETSLTIPGIKYVVDTGREKVKKYNSANGIESYEIQWISKASA 514 (764)
Q Consensus 435 ~~~~i~pLHs~l~~~eQ~~vf~~~~~g~rKVIlsTNIAEtSITIpdV~~VID~G~~K~~~yd~~~~~~~l~~~~iSkasa 514 (764)
.+.....+||+-.+++|....+.|+.|+..|+|||++|..|+++|||.+||| ||-+.. -.||
T Consensus 444 KGVEavaIHGGKDQedR~~ai~afr~gkKDVLVATDVASKGLDFp~iqHVIN--------yDMP~e----------IENY 505 (610)
T KOG0341|consen 444 KGVEAVAIHGGKDQEDRHYAIEAFRAGKKDVLVATDVASKGLDFPDIQHVIN--------YDMPEE----------IENY 505 (610)
T ss_pred ccceeEEeecCcchhHHHHHHHHHhcCCCceEEEecchhccCCCccchhhcc--------CCChHH----------HHHH
Confidence 3578999999999999999999999999999999999999999999999998 774444 4567
Q ss_pred HHhccccCCCCC-CEEEEccCHH
Q 038192 515 AQRAGRAGRTAP-GHCYRLYSSA 536 (764)
Q Consensus 515 ~QR~GRAGR~~~-G~cyrLys~~ 536 (764)
.||.||+||.+. |+.-.++.+.
T Consensus 506 VHRIGRTGRsg~~GiATTfINK~ 528 (610)
T KOG0341|consen 506 VHRIGRTGRSGKTGIATTFINKN 528 (610)
T ss_pred HHHhcccCCCCCcceeeeeeccc
Confidence 799999999998 9887777664
No 62
>KOG0334 consensus RNA helicase [RNA processing and modification]
Probab=99.81 E-value=1.5e-19 Score=210.91 Aligned_cols=296 Identities=21% Similarity=0.247 Sum_probs=197.2
Q ss_pred HHHHHHHHHcCCeEEEEecCCCCccccHHHHHHHhcc-CCCCCCCCCceEEEecccHHHHHHHHHHHHHHhCCCCCCEee
Q 038192 40 EQEIMEAVNDNSAVIICGETGCGKTTQVPQFLFEAGF-GSNRCSSRSGRIGVTQPRRVAVLATAKRVAFELGLHLGKEVG 118 (764)
Q Consensus 40 ~~~Il~~l~~~~vviI~GeTGSGKTTqvPq~Lle~~~-~~~~~~~~~~~Ii~tQPRRiaAisvA~RVa~E~g~~lG~~VG 118 (764)
|.+.+.+|..++.||..|.||||||..+-.+++.+.. ......+.....++.-|+|..|.|+-+.+.+... .+|..+-
T Consensus 392 Q~qAiP~ImsGrdvIgvakTgSGKT~af~LPmirhi~dQr~~~~gdGPi~li~aPtrela~QI~r~~~kf~k-~l~ir~v 470 (997)
T KOG0334|consen 392 QAQAIPAIMSGRDVIGVAKTGSGKTLAFLLPMIRHIKDQRPLEEGDGPIALILAPTRELAMQIHREVRKFLK-LLGIRVV 470 (997)
T ss_pred hhhhcchhccCcceEEeeccCCccchhhhcchhhhhhcCCChhhCCCceEEEEcCCHHHHHHHHHHHHHHHh-hcCceEE
Confidence 5556677777877899999999999876333333221 1111112234567889999999999887765443 3554332
Q ss_pred --EE-eccC---cccCCCceEEEEchHHHHHHHHH--------------HHHHHHHHHhhcccc----CCccCCCCceEE
Q 038192 119 --FQ-VRHD---KKIGDSCSIKFMTDGILLRELKA--------------LYEKQQQLLRSGQCI----EPKDRVFPLKLI 174 (764)
Q Consensus 119 --Y~-ir~e---~~~s~~t~I~f~T~GiLLr~l~~--------------i~de~~~~l~~~~~~----~~~~~~~~lKlI 174 (764)
|+ ++.. +.....+.|++||+|+.++.+-. ++||+++|+++||.- .+...+|+.+.|
T Consensus 471 ~vygg~~~~~qiaelkRg~eIvV~tpGRmiD~l~~n~grvtnlrR~t~lv~deaDrmfdmgfePq~~~Ii~nlrpdrQtv 550 (997)
T KOG0334|consen 471 CVYGGSGISQQIAELKRGAEIVVCTPGRMIDILCANSGRVTNLRRVTYLVLDEADRMFDMGFEPQITRILQNLRPDRQTV 550 (997)
T ss_pred EecCCccHHHHHHHHhcCCceEEeccchhhhhHhhcCCccccccccceeeechhhhhheeccCcccchHHhhcchhhhhh
Confidence 21 1111 12345689999999999998832 569999999888742 234457899999
Q ss_pred Eeecccch--hhhccccCCCCCCCeeeeCCccc---ceeEEecCCCchhhHHHHHHHHHHH-HhhcCCCCCeEEecCCHH
Q 038192 175 LMSATLRV--EDFISGGRLFRNPPIIEVPTRQF---PVTVHFSKRTEIVDYIGQAYKKVMS-IHKRLPQGGILVFVTGQR 248 (764)
Q Consensus 175 LMSATl~~--~~f~~~~~~f~~~~vi~i~gr~~---pV~~~y~~~~~~~d~l~~~~~~v~~-i~~~~~~g~ilvF~~g~~ 248 (764)
++|||+.. +.++. +...-|-.|.|.|+.- .|+..+--.. ...+.+.+++. +......+.++||++.+.
T Consensus 551 lfSatfpr~m~~la~--~vl~~Pveiiv~~~svV~k~V~q~v~V~~----~e~eKf~kL~eLl~e~~e~~~tiiFv~~qe 624 (997)
T KOG0334|consen 551 LFSATFPRSMEALAR--KVLKKPVEIIVGGRSVVCKEVTQVVRVCA----IENEKFLKLLELLGERYEDGKTIIFVDKQE 624 (997)
T ss_pred hhhhhhhHHHHHHHH--HhhcCCeeEEEccceeEeccceEEEEEec----CchHHHHHHHHHHHHHhhcCCEEEEEcCch
Confidence 99999944 33432 3344222344544431 1221111000 01111222222 222234677788887777
Q ss_pred HHHHHHHHHHHHHHHhhhhccccccCCccccCCCCCccccchhHHhHHHHHhhcCcccccccccCCCCCcccccCccccc
Q 038192 249 EVEYLCSKLRKASKQLLVNSSKENKGNQVVADSEPNATKDINMKEINEAFEIQGYSTEQQTDRFSSYDEDQFDIDDNELD 328 (764)
Q Consensus 249 ~ie~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~ 328 (764)
.+..+.+.|.+
T Consensus 625 ~~d~l~~~L~~--------------------------------------------------------------------- 635 (997)
T KOG0334|consen 625 KADALLRDLQK--------------------------------------------------------------------- 635 (997)
T ss_pred HHHHHHHHHHh---------------------------------------------------------------------
Confidence 66655544432
Q ss_pred cccCccchhhhhhccchhhhhhhcCCCCCCCCcccccccchhhhhHHHHHHhhcCCCCCCCccccCCCCCCCCcCCCCCC
Q 038192 329 ALSDSETESETEILGEDEKLVEQKCPMDGDDPVDVLKENWSLGSLKLAFEVLSGKNASGPSSQMKLSTPAIPEQCTELPP 408 (764)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilvfl~g~~~i~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 408 (764)
T Consensus 636 -------------------------------------------------------------------------------- 635 (997)
T KOG0334|consen 636 -------------------------------------------------------------------------------- 635 (997)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCCCCCCccccccCcccCCCCCeEEEecCCCCCHHHHHhhhccCCCCceEEEEecCcccccCCCCCeEEEEeCC
Q 038192 409 TPTPEQCPELSSPDVEKMGDNKRAGVGALCVLPLYAMLPAAAQLRVFEDVKEGERLVVVSTNVAETSLTIPGIKYVVDTG 488 (764)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~pLHs~l~~~eQ~~vf~~~~~g~rKVIlsTNIAEtSITIpdV~~VID~G 488 (764)
.++....|||+.++.++..+...|++|..+++++|.+|.+|+++.++-.||+
T Consensus 636 --------------------------ag~~~~slHGgv~q~dR~sti~dfK~~~~~LLvaTsvvarGLdv~~l~Lvvn-- 687 (997)
T KOG0334|consen 636 --------------------------AGYNCDSLHGGVDQHDRSSTIEDFKNGVVNLLVATSVVARGLDVKELILVVN-- 687 (997)
T ss_pred --------------------------cCcchhhhcCCCchHHHHhHHHHHhccCceEEEehhhhhcccccccceEEEE--
Confidence 1233445899999999999999999999999999999999999999999997
Q ss_pred cccceeeccCCCccccceeeccHHhHHHhccccCCCCC-CEEEEccCH
Q 038192 489 REKVKKYNSANGIESYEIQWISKASAAQRAGRAGRTAP-GHCYRLYSS 535 (764)
Q Consensus 489 ~~K~~~yd~~~~~~~l~~~~iSkasa~QR~GRAGR~~~-G~cyrLys~ 535 (764)
||.+++... |.||.|||||+++ |.||-+.+.
T Consensus 688 ------yd~pnh~ed----------yvhR~gRTgragrkg~AvtFi~p 719 (997)
T KOG0334|consen 688 ------YDFPNHYED----------YVHRVGRTGRAGRKGAAVTFITP 719 (997)
T ss_pred ------cccchhHHH----------HHHHhcccccCCccceeEEEeCh
Confidence 888887665 5599999999998 999988887
No 63
>KOG4284 consensus DEAD box protein [Transcription]
Probab=99.78 E-value=1.5e-18 Score=191.64 Aligned_cols=305 Identities=16% Similarity=0.214 Sum_probs=192.8
Q ss_pred CCCchhhHHHHHHHHHcCCeEEEEecCCCCccccHHHHHHHhccCCCCCCCCCceEEEecccHHHHHHHHHHHHHHhCCC
Q 038192 33 DLPIVMMEQEIMEAVNDNSAVIICGETGCGKTTQVPQFLFEAGFGSNRCSSRSGRIGVTQPRRVAVLATAKRVAFELGLH 112 (764)
Q Consensus 33 ~LPi~~~~~~Il~~l~~~~vviI~GeTGSGKTTqvPq~Lle~~~~~~~~~~~~~~Ii~tQPRRiaAisvA~RVa~E~g~~ 112 (764)
.+|...+-..| .++...=.+||++..|+|||..+-...++..-.... ...+++.-|+|..|+++-+-|..---.-
T Consensus 46 ~~ptkiQaaAI-P~~~~kmDliVQaKSGTGKTlVfsv~av~sl~~~~~----~~q~~Iv~PTREiaVQI~~tv~~v~~sf 120 (980)
T KOG4284|consen 46 ALPTKIQAAAI-PAIFSKMDLIVQAKSGTGKTLVFSVLAVESLDSRSS----HIQKVIVTPTREIAVQIKETVRKVAPSF 120 (980)
T ss_pred cCCCchhhhhh-hhhhcccceEEEecCCCCceEEEEeeeehhcCcccC----cceeEEEecchhhhhHHHHHHHHhcccc
Confidence 57876666555 455555558999999999998766666665432222 3578888999999999977554332222
Q ss_pred CCCEeeEEec-----cCcccCCCceEEEEchHHHHHHHHH-----------HHHHHHHHHhhcccc-----CCccCCCCc
Q 038192 113 LGKEVGFQVR-----HDKKIGDSCSIKFMTDGILLRELKA-----------LYEKQQQLLRSGQCI-----EPKDRVFPL 171 (764)
Q Consensus 113 lG~~VGY~ir-----~e~~~s~~t~I~f~T~GiLLr~l~~-----------i~de~~~~l~~~~~~-----~~~~~~~~l 171 (764)
-|-.+.--|+ .+...=+.|+|+++|||++++.+.. |+||++.++..+.+. .+......-
T Consensus 121 ~g~~csvfIGGT~~~~d~~rlk~~rIvIGtPGRi~qL~el~~~n~s~vrlfVLDEADkL~~t~sfq~~In~ii~slP~~r 200 (980)
T KOG4284|consen 121 TGARCSVFIGGTAHKLDLIRLKQTRIVIGTPGRIAQLVELGAMNMSHVRLFVLDEADKLMDTESFQDDINIIINSLPQIR 200 (980)
T ss_pred cCcceEEEecCchhhhhhhhhhhceEEecCchHHHHHHHhcCCCccceeEEEeccHHhhhchhhHHHHHHHHHHhcchhh
Confidence 2333332233 3333336799999999999998732 679998876644221 111223356
Q ss_pred eEEEeecccch--hhhccccCCCCCCCeeeeCCc---ccceeEEecCCCchhhHHH---HHHHHHHHHhhcCCCCCeEEe
Q 038192 172 KLILMSATLRV--EDFISGGRLFRNPPIIEVPTR---QFPVTVHFSKRTEIVDYIG---QAYKKVMSIHKRLPQGGILVF 243 (764)
Q Consensus 172 KlILMSATl~~--~~f~~~~~~f~~~~vi~i~gr---~~pV~~~y~~~~~~~d~l~---~~~~~v~~i~~~~~~g~ilvF 243 (764)
+++.+|||.+- +...+ +|..++..|....+ .|.++.||-....-.+.+. ....++-++.+.+|-...|||
T Consensus 201 Qv~a~SATYp~nLdn~Ls--k~mrdp~lVr~n~~d~~L~GikQyv~~~~s~nnsveemrlklq~L~~vf~~ipy~QAlVF 278 (980)
T KOG4284|consen 201 QVAAFSATYPRNLDNLLS--KFMRDPALVRFNADDVQLFGIKQYVVAKCSPNNSVEEMRLKLQKLTHVFKSIPYVQALVF 278 (980)
T ss_pred eeeEEeccCchhHHHHHH--HHhcccceeecccCCceeechhheeeeccCCcchHHHHHHHHHHHHHHHhhCchHHHHhh
Confidence 79999999943 33322 67777776665543 2334443321110011111 122223333444444444555
Q ss_pred cCCHHHHHHHHHHHHHHHHHhhhhccccccCCccccCCCCCccccchhHHhHHHHHhhcCcccccccccCCCCCcccccC
Q 038192 244 VTGQREVEYLCSKLRKASKQLLVNSSKENKGNQVVADSEPNATKDINMKEINEAFEIQGYSTEQQTDRFSSYDEDQFDID 323 (764)
Q Consensus 244 ~~g~~~ie~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~ 323 (764)
+...-.++.++..|
T Consensus 279 ~~~~sra~~~a~~L------------------------------------------------------------------ 292 (980)
T KOG4284|consen 279 CDQISRAEPIATHL------------------------------------------------------------------ 292 (980)
T ss_pred hhhhhhhhHHHHHh------------------------------------------------------------------
Confidence 43322222111111
Q ss_pred ccccccccCccchhhhhhccchhhhhhhcCCCCCCCCcccccccchhhhhHHHHHHhhcCCCCCCCccccCCCCCCCCcC
Q 038192 324 DNELDALSDSETESETEILGEDEKLVEQKCPMDGDDPVDVLKENWSLGSLKLAFEVLSGKNASGPSSQMKLSTPAIPEQC 403 (764)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilvfl~g~~~i~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 403 (764)
T Consensus 293 -------------------------------------------------------------------------------- 292 (980)
T KOG4284|consen 293 -------------------------------------------------------------------------------- 292 (980)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCCCCCCCCCCCccccccCcccCCCCCeEEEecCCCCCHHHHHhhhccCCCCceEEEEecCcccccCCCCCeEE
Q 038192 404 TELPPTPTPEQCPELSSPDVEKMGDNKRAGVGALCVLPLYAMLPAAAQLRVFEDVKEGERLVVVSTNVAETSLTIPGIKY 483 (764)
Q Consensus 404 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~pLHs~l~~~eQ~~vf~~~~~g~rKVIlsTNIAEtSITIpdV~~ 483 (764)
...++-+-.+.|.|++.+|..+|...+.-..+|+|||+...|||+-|+|..
T Consensus 293 -----------------------------~ssG~d~~~ISgaM~Q~~Rl~a~~~lr~f~~rILVsTDLtaRGIDa~~vNL 343 (980)
T KOG4284|consen 293 -----------------------------KSSGLDVTFISGAMSQKDRLLAVDQLRAFRVRILVSTDLTARGIDADNVNL 343 (980)
T ss_pred -----------------------------hccCCCeEEeccccchhHHHHHHHHhhhceEEEEEecchhhccCCccccce
Confidence 112455666779999999999999999889999999999999999999999
Q ss_pred EEeCCcccceeeccCCCccccceeeccHHhHHHhccccCCCCC-CEEEEccCHHH
Q 038192 484 VVDTGREKVKKYNSANGIESYEIQWISKASAAQRAGRAGRTAP-GHCYRLYSSAV 537 (764)
Q Consensus 484 VID~G~~K~~~yd~~~~~~~l~~~~iSkasa~QR~GRAGR~~~-G~cyrLys~~~ 537 (764)
||| .|++-+ -..|.||.|||||.|. |....++-+++
T Consensus 344 VVN--------iD~p~d----------~eTY~HRIGRAgRFG~~G~aVT~~~~~~ 380 (980)
T KOG4284|consen 344 VVN--------IDAPAD----------EETYFHRIGRAGRFGAHGAAVTLLEDER 380 (980)
T ss_pred EEe--------cCCCcc----------hHHHHHHhhhcccccccceeEEEeccch
Confidence 998 555443 4456799999999998 99988876643
No 64
>PRK09401 reverse gyrase; Reviewed
Probab=99.78 E-value=4.5e-18 Score=210.09 Aligned_cols=115 Identities=16% Similarity=0.172 Sum_probs=76.9
Q ss_pred CchhhHHHHHHHHHcCCeEEEEecCCCCccccHHHHHHHhccCCCCCCCCCceEEEecccHHHHHHHHHHHHHHhCCCCC
Q 038192 35 PIVMMEQEIMEAVNDNSAVIICGETGCGKTTQVPQFLFEAGFGSNRCSSRSGRIGVTQPRRVAVLATAKRVAFELGLHLG 114 (764)
Q Consensus 35 Pi~~~~~~Il~~l~~~~vviI~GeTGSGKTTqvPq~Lle~~~~~~~~~~~~~~Ii~tQPRRiaAisvA~RVa~E~g~~lG 114 (764)
.-+..|...+..+..++.++++++||||||+. .+.+...... + ..++++..|+|.+|.|+++++. .++...|
T Consensus 80 ~pt~iQ~~~i~~il~g~dv~i~ApTGsGKT~f-~l~~~~~l~~-~-----g~~alIL~PTreLa~Qi~~~l~-~l~~~~~ 151 (1176)
T PRK09401 80 KPWSLQRTWAKRLLLGESFAIIAPTGVGKTTF-GLVMSLYLAK-K-----GKKSYIIFPTRLLVEQVVEKLE-KFGEKVG 151 (1176)
T ss_pred CCcHHHHHHHHHHHCCCcEEEEcCCCCCHHHH-HHHHHHHHHh-c-----CCeEEEEeccHHHHHHHHHHHH-HHhhhcC
Confidence 44556666777777777789999999999973 3322221111 1 2589999999999999999775 4555555
Q ss_pred CEeeEEeccCc-----------c-cCCCceEEEEchHHHHHHHHH---------HHHHHHHHHh
Q 038192 115 KEVGFQVRHDK-----------K-IGDSCSIKFMTDGILLRELKA---------LYEKQQQLLR 157 (764)
Q Consensus 115 ~~VGY~ir~e~-----------~-~s~~t~I~f~T~GiLLr~l~~---------i~de~~~~l~ 157 (764)
..+.......+ . .....+|+++|+|.|.+.+.. ++||+|+++.
T Consensus 152 ~~~~~~~g~~~~~~~ek~~~~~~l~~~~~~IlV~Tp~rL~~~~~~l~~~~~~~lVvDEaD~~L~ 215 (1176)
T PRK09401 152 CGVKILYYHSSLKKKEKEEFLERLKEGDFDILVTTSQFLSKNFDELPKKKFDFVFVDDVDAVLK 215 (1176)
T ss_pred ceEEEEEccCCcchhHHHHHHHHHhcCCCCEEEECHHHHHHHHHhccccccCEEEEEChHHhhh
Confidence 44332222111 1 123578999999999998753 4589988774
No 65
>KOG0346 consensus RNA helicase [RNA processing and modification]
Probab=99.77 E-value=2.1e-18 Score=183.85 Aligned_cols=208 Identities=23% Similarity=0.235 Sum_probs=127.5
Q ss_pred CCCchhhHHHHHHHHHcCCeEEEEecCCCCccccHHHHHHHhccCCCC--CCCCCceEEEecccHHHHHHHHHHHHHHhC
Q 038192 33 DLPIVMMEQEIMEAVNDNSAVIICGETGCGKTTQVPQFLFEAGFGSNR--CSSRSGRIGVTQPRRVAVLATAKRVAFELG 110 (764)
Q Consensus 33 ~LPi~~~~~~Il~~l~~~~vviI~GeTGSGKTTqvPq~Lle~~~~~~~--~~~~~~~Ii~tQPRRiaAisvA~RVa~E~g 110 (764)
.-|.-.+...|.-++++.+ ++..+.||||||...-.+|++..+..+. ...+....++..|+|..|.++..-+.+--
T Consensus 40 ekpTlIQs~aIplaLEgKD-vvarArTGSGKT~AYliPllqkll~~k~t~~~e~~~sa~iLvPTkEL~qQvy~viekL~- 117 (569)
T KOG0346|consen 40 EKPTLIQSSAIPLALEGKD-VVARARTGSGKTAAYLIPLLQKLLAEKKTNDGEQGPSAVILVPTKELAQQVYKVIEKLV- 117 (569)
T ss_pred CCcchhhhcccchhhcCcc-eeeeeccCCCchHHHHHHHHHHHHHhhhcccccccceeEEEechHHHHHHHHHHHHHHH-
Confidence 3477778888888888775 7899999999999866666654332211 11233567889999999999877443221
Q ss_pred CCCCCEeeEEeccCcc------------cCCCceEEEEchHHHHHHHHH------------HHHHHHHHHhhccccCCc-
Q 038192 111 LHLGKEVGFQVRHDKK------------IGDSCSIKFMTDGILLRELKA------------LYEKQQQLLRSGQCIEPK- 165 (764)
Q Consensus 111 ~~lG~~VGY~ir~e~~------------~s~~t~I~f~T~GiLLr~l~~------------i~de~~~~l~~~~~~~~~- 165 (764)
..++-.+|.-+- ..+...|+++|||.|++++.. ++||++-++--|.-....
T Consensus 118 ----~~c~k~lr~~nl~s~~sdsv~~~~L~d~pdIvV~TP~~ll~~~~~~~~~~~~~l~~LVvDEADLllsfGYeedlk~ 193 (569)
T KOG0346|consen 118 ----EYCSKDLRAINLASSMSDSVNSVALMDLPDIVVATPAKLLRHLAAGVLEYLDSLSFLVVDEADLLLSFGYEEDLKK 193 (569)
T ss_pred ----HHHHHhhhhhhhhcccchHHHHHHHccCCCeEEeChHHHHHHHhhccchhhhheeeEEechhhhhhhcccHHHHHH
Confidence 112222332221 135678999999999999853 458888776655432221
Q ss_pred --c-CCCCceEEEeeccc--chhhhccccCCCCCCCeeeeCCcccc----eeEEecCCCchhhHHHHHHHHHHHHhhcCC
Q 038192 166 --D-RVFPLKLILMSATL--RVEDFISGGRLFRNPPIIEVPTRQFP----VTVHFSKRTEIVDYIGQAYKKVMSIHKRLP 236 (764)
Q Consensus 166 --~-~~~~lKlILMSATl--~~~~f~~~~~~f~~~~vi~i~gr~~p----V~~~y~~~~~~~d~l~~~~~~v~~i~~~~~ 236 (764)
. ..+..+-+|||||+ |+..+.. -+..|+-++......-| +..|+....+ +|-+.-++. ++. .++-
T Consensus 194 l~~~LPr~~Q~~LmSATl~dDv~~LKk--L~l~nPviLkl~e~el~~~dqL~Qy~v~cse-~DKflllya-llK--L~LI 267 (569)
T KOG0346|consen 194 LRSHLPRIYQCFLMSATLSDDVQALKK--LFLHNPVILKLTEGELPNPDQLTQYQVKCSE-EDKFLLLYA-LLK--LRLI 267 (569)
T ss_pred HHHhCCchhhheeehhhhhhHHHHHHH--HhccCCeEEEeccccCCCcccceEEEEEecc-chhHHHHHH-HHH--HHHh
Confidence 1 23567899999999 6666653 34566666777655554 3345544433 332221111 111 1234
Q ss_pred CCCeEEecCCHHHHHH
Q 038192 237 QGGILVFVTGQREVEY 252 (764)
Q Consensus 237 ~g~ilvF~~g~~~ie~ 252 (764)
.|.+|+|+++-.....
T Consensus 268 ~gKsliFVNtIdr~Yr 283 (569)
T KOG0346|consen 268 RGKSLIFVNTIDRCYR 283 (569)
T ss_pred cCceEEEEechhhhHH
Confidence 6888999987544433
No 66
>PHA02558 uvsW UvsW helicase; Provisional
Probab=99.73 E-value=7.7e-17 Score=185.76 Aligned_cols=74 Identities=18% Similarity=0.174 Sum_probs=64.4
Q ss_pred eEEEecCCCCCHHHHHhhhccCCCCceEEEEec-CcccccCCCCCeEEEEeCCcccceeeccCCCccccceeeccHHhHH
Q 038192 437 LCVLPLYAMLPAAAQLRVFEDVKEGERLVVVST-NVAETSLTIPGIKYVVDTGREKVKKYNSANGIESYEIQWISKASAA 515 (764)
Q Consensus 437 ~~i~pLHs~l~~~eQ~~vf~~~~~g~rKVIlsT-NIAEtSITIpdV~~VID~G~~K~~~yd~~~~~~~l~~~~iSkasa~ 515 (764)
..+..+||+++.++|.++.+.+..|...||||| +++.+|++||+|..||- ++|. -|+..+.
T Consensus 369 ~~v~~i~G~~~~~eR~~i~~~~~~~~~~vLvaT~~~l~eG~Dip~ld~vIl--------~~p~----------~s~~~~~ 430 (501)
T PHA02558 369 DKVYYVSGEVDTEDRNEMKKIAEGGKGIIIVASYGVFSTGISIKNLHHVIF--------AHPS----------KSKIIVL 430 (501)
T ss_pred CCEEEEeCCCCHHHHHHHHHHHhCCCCeEEEEEcceeccccccccccEEEE--------ecCC----------cchhhhh
Confidence 568999999999999999999999998999998 99999999999999994 3333 2567778
Q ss_pred HhccccCCCCCCE
Q 038192 516 QRAGRAGRTAPGH 528 (764)
Q Consensus 516 QR~GRAGR~~~G~ 528 (764)
||+||+||.++|+
T Consensus 431 QriGR~~R~~~~K 443 (501)
T PHA02558 431 QSIGRVLRKHGSK 443 (501)
T ss_pred hhhhccccCCCCC
Confidence 9999999999864
No 67
>PRK14701 reverse gyrase; Provisional
Probab=99.73 E-value=1.9e-17 Score=208.73 Aligned_cols=92 Identities=14% Similarity=0.042 Sum_probs=69.9
Q ss_pred CeEEEecCCCCCHHHHHhhhccCCCCceEEEEec----CcccccCCCCC-eEEEEeCCccccee----eccCCCccccce
Q 038192 436 ALCVLPLYAMLPAAAQLRVFEDVKEGERLVVVST----NVAETSLTIPG-IKYVVDTGREKVKK----YNSANGIESYEI 506 (764)
Q Consensus 436 ~~~i~pLHs~l~~~eQ~~vf~~~~~g~rKVIlsT----NIAEtSITIpd-V~~VID~G~~K~~~----yd~~~~~~~l~~ 506 (764)
++.+.++||+ +.++++.|..|...|+||| |+|.+||+||+ |+|||..|.+|.+. |......
T Consensus 357 Gi~a~~~h~~-----R~~~l~~F~~G~~~VLVaT~s~~gvaaRGIDiP~~Vryvi~~~~Pk~~~~~e~~~~~~~~----- 426 (1638)
T PRK14701 357 GFKIELVSAK-----NKKGFDLFEEGEIDYLIGVATYYGTLVRGLDLPERIRFAVFYGVPKFRFRVDLEDPTIYR----- 426 (1638)
T ss_pred CCeEEEecch-----HHHHHHHHHcCCCCEEEEecCCCCeeEecCccCCccCEEEEeCCCCCCcchhhcccchhh-----
Confidence 4778899985 7889999999999999999 69999999999 99999999999441 3322211
Q ss_pred eeccHHhHHHhccccCCCC-CCEEEEccCHHHh
Q 038192 507 QWISKASAAQRAGRAGRTA-PGHCYRLYSSAVF 538 (764)
Q Consensus 507 ~~iSkasa~QR~GRAGR~~-~G~cyrLys~~~~ 538 (764)
.|- ...+.++.|||||.+ |+.|+-.|..+..
T Consensus 427 ~~~-~~~~~~~~~~a~~~g~~~~~~~~~~~~~~ 458 (1638)
T PRK14701 427 ILG-LLSEILKIEEELKEGIPIEGVLDVFPEDV 458 (1638)
T ss_pred hhc-chHHHHHhhhhcccCCcchhHHHhHHHHH
Confidence 111 344668889999988 4788755555544
No 68
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=99.72 E-value=1.7e-16 Score=196.57 Aligned_cols=116 Identities=18% Similarity=0.162 Sum_probs=75.2
Q ss_pred CCchhhHHHHHHHHHcCCeEEEEecCCCCccccHHHHHHHhccCCCCCCCCCceEEEecccHHHHHHHHHHHHHHhCCCC
Q 038192 34 LPIVMMEQEIMEAVNDNSAVIICGETGCGKTTQVPQFLFEAGFGSNRCSSRSGRIGVTQPRRVAVLATAKRVAFELGLHL 113 (764)
Q Consensus 34 LPi~~~~~~Il~~l~~~~vviI~GeTGSGKTTqvPq~Lle~~~~~~~~~~~~~~Ii~tQPRRiaAisvA~RVa~E~g~~l 113 (764)
..-+..|...+..+..++.++++|+||||||+.. ..+....... ..++++.-|+|.+|.|+++++.. +....
T Consensus 77 ~~p~~iQ~~~i~~il~G~d~vi~ApTGsGKT~f~-l~~~~~l~~~------g~~vLIL~PTreLa~Qi~~~l~~-l~~~~ 148 (1171)
T TIGR01054 77 SEPWSIQKMWAKRVLRGDSFAIIAPTGVGKTTFG-LAMSLFLAKK------GKRCYIILPTTLLVIQVAEKISS-LAEKA 148 (1171)
T ss_pred CCCcHHHHHHHHHHhCCCeEEEECCCCCCHHHHH-HHHHHHHHhc------CCeEEEEeCHHHHHHHHHHHHHH-HHHhc
Confidence 3445566666677777777889999999999842 2222221111 25899999999999999887654 33333
Q ss_pred CC---EeeEEeccCc---------cc-CCCceEEEEchHHHHHHHHH--------HHHHHHHHHh
Q 038192 114 GK---EVGFQVRHDK---------KI-GDSCSIKFMTDGILLRELKA--------LYEKQQQLLR 157 (764)
Q Consensus 114 G~---~VGY~ir~e~---------~~-s~~t~I~f~T~GiLLr~l~~--------i~de~~~~l~ 157 (764)
|- .+|+-...-+ +. ....+|+++|+|.|.+.+.. ++||+|+++.
T Consensus 149 ~i~~~~i~~~~Gg~~~~e~~~~~~~l~~~~~dIlV~Tp~rL~~~~~~l~~~~~~iVvDEaD~~L~ 213 (1171)
T TIGR01054 149 GVGTVNIGAYHSRLPTKEKKEFMERIENGDFDILITTTMFLSKNYDELGPKFDFIFVDDVDALLK 213 (1171)
T ss_pred CCceeeeeeecCCCCHHHHHHHHHHHhcCCCCEEEECHHHHHHHHHHhcCCCCEEEEeChHhhhh
Confidence 31 1332211111 11 23478999999999988754 3489998875
No 69
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=99.72 E-value=1.2e-16 Score=187.64 Aligned_cols=366 Identities=20% Similarity=0.218 Sum_probs=232.7
Q ss_pred hHHHhhhcCCCchhhHHHHHHHHHcCCeEEEEecCCCCccccHHHHHHHhccCC-CCCCCCCceEEEecccHHHHHHHHH
Q 038192 25 NEVENNRKDLPIVMMEQEIMEAVNDNSAVIICGETGCGKTTQVPQFLFEAGFGS-NRCSSRSGRIGVTQPRRVAVLATAK 103 (764)
Q Consensus 25 ~~~~~~R~~LPi~~~~~~Il~~l~~~~vviI~GeTGSGKTTqvPq~Lle~~~~~-~~~~~~~~~Ii~tQPRRiaAisvA~ 103 (764)
.+..+.+-.=|...++..| ..|.++..++|.++||||||..--.+++...... +........++-.-|=|.++.-+-.
T Consensus 13 ~~~~~~~~~~~t~~Q~~a~-~~i~~G~nvLiiAPTGsGKTeAAfLpil~~l~~~~~~~~~~~i~~lYIsPLkALn~Di~~ 91 (814)
T COG1201 13 REWFKRKFTSLTPPQRYAI-PEIHSGENVLIIAPTGSGKTEAAFLPVINELLSLGKGKLEDGIYALYISPLKALNNDIRR 91 (814)
T ss_pred HHHHHHhcCCCCHHHHHHH-HHHhCCCceEEEcCCCCChHHHHHHHHHHHHHhccCCCCCCceEEEEeCcHHHHHHHHHH
Confidence 3444444555666666555 5555777789999999999976333444333222 1111122567778899999988888
Q ss_pred HHHHHhCCCCCCEeeEEeccCccc--------CCCceEEEEchHHHHHHHH-----H--------HHHHHHHHHhhc--c
Q 038192 104 RVAFELGLHLGKEVGFQVRHDKKI--------GDSCSIKFMTDGILLRELK-----A--------LYEKQQQLLRSG--Q 160 (764)
Q Consensus 104 RVa~E~g~~lG~~VGY~ir~e~~~--------s~~t~I~f~T~GiLLr~l~-----~--------i~de~~~~l~~~--~ 160 (764)
|+- ++++.+|-.| ++|..+.. .+-.+|++.||+-|--.|- + |+||.|.+.... .
T Consensus 92 rL~-~~~~~~G~~v--~vRhGDT~~~er~r~~~~PPdILiTTPEsL~lll~~~~~r~~l~~vr~VIVDEiHel~~sKRG~ 168 (814)
T COG1201 92 RLE-EPLRELGIEV--AVRHGDTPQSEKQKMLKNPPHILITTPESLAILLNSPKFRELLRDVRYVIVDEIHALAESKRGV 168 (814)
T ss_pred HHH-HHHHHcCCcc--ceecCCCChHHhhhccCCCCcEEEeChhHHHHHhcCHHHHHHhcCCcEEEeehhhhhhccccch
Confidence 773 4555667777 66665533 2346899999998876651 1 568888765432 2
Q ss_pred ccCC-----ccCCCCceEEEeeccc-chhhhccccCCCC----CCCeeeeCC-cccceeEEecCCCchhh---HHHHHHH
Q 038192 161 CIEP-----KDRVFPLKLILMSATL-RVEDFISGGRLFR----NPPIIEVPT-RQFPVTVHFSKRTEIVD---YIGQAYK 226 (764)
Q Consensus 161 ~~~~-----~~~~~~lKlILMSATl-~~~~f~~~~~~f~----~~~vi~i~g-r~~pV~~~y~~~~~~~d---~l~~~~~ 226 (764)
.+.+ ....++++-|..|||+ +.+..+ +|+. .|.++.+++ +.+.+++....... .+ ....+++
T Consensus 169 ~Lsl~LeRL~~l~~~~qRIGLSATV~~~~~va---rfL~g~~~~~~Iv~~~~~k~~~i~v~~p~~~~-~~~~~~~~~~~~ 244 (814)
T COG1201 169 QLALSLERLRELAGDFQRIGLSATVGPPEEVA---KFLVGFGDPCEIVDVSAAKKLEIKVISPVEDL-IYDEELWAALYE 244 (814)
T ss_pred hhhhhHHHHHhhCcccEEEeehhccCCHHHHH---HHhcCCCCceEEEEcccCCcceEEEEecCCcc-ccccchhHHHHH
Confidence 1111 1122389999999999 556555 3433 257777775 44556655443220 11 1222344
Q ss_pred HHHHHhhcCCCCCeEEecCCHHHHHHHHHHHHHHHHHhhhhccccccCCccccCCCCCccccchhHHhHHHHHhhcCccc
Q 038192 227 KVMSIHKRLPQGGILVFVTGQREVEYLCSKLRKASKQLLVNSSKENKGNQVVADSEPNATKDINMKEINEAFEIQGYSTE 306 (764)
Q Consensus 227 ~v~~i~~~~~~g~ilvF~~g~~~ie~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (764)
.+.++-++ ....|||+++....|.+...|++..
T Consensus 245 ~i~~~v~~--~~ttLIF~NTR~~aE~l~~~L~~~~--------------------------------------------- 277 (814)
T COG1201 245 RIAELVKK--HRTTLIFTNTRSGAERLAFRLKKLG--------------------------------------------- 277 (814)
T ss_pred HHHHHHhh--cCcEEEEEeChHHHHHHHHHHHHhc---------------------------------------------
Confidence 44444332 3378999999988888877765410
Q ss_pred ccccccCCCCCcccccCccccccccCccchhhhhhccchhhhhhhcCCCCCCCCcccccccchhhhhHHHHHHhhcCCCC
Q 038192 307 QQTDRFSSYDEDQFDIDDNELDALSDSETESETEILGEDEKLVEQKCPMDGDDPVDVLKENWSLGSLKLAFEVLSGKNAS 386 (764)
Q Consensus 307 ~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilvfl~g~~~i~~l~~~~~~l~~~~~~ 386 (764)
T Consensus 278 -------------------------------------------------------------------------------- 277 (814)
T COG1201 278 -------------------------------------------------------------------------------- 277 (814)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCccccCCCCCCCCcCCCCCCCCCCCCCCCCCCCccccccCcccCCCCCeEEEecCCCCCHHHHHhhhccCCCCceEEE
Q 038192 387 GPSSQMKLSTPAIPEQCTELPPTPTPEQCPELSSPDVEKMGDNKRAGVGALCVLPLYAMLPAAAQLRVFEDVKEGERLVV 466 (764)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~pLHs~l~~~eQ~~vf~~~~~g~rKVI 466 (764)
...+..-||+|+.++|..+-+.+++|.-|+|
T Consensus 278 -------------------------------------------------~~~i~~HHgSlSre~R~~vE~~lk~G~lrav 308 (814)
T COG1201 278 -------------------------------------------------PDIIEVHHGSLSRELRLEVEERLKEGELKAV 308 (814)
T ss_pred -------------------------------------------------CCceeeecccccHHHHHHHHHHHhcCCceEE
Confidence 0235666999999999999999999999999
Q ss_pred EecCcccccCCCCCeEEEEeCCcccceeeccCCCccccceeeccHHhHHHhccccCCCCC----CEEEEccCHHHhcc--
Q 038192 467 VSTNVAETSLTIPGIKYVVDTGREKVKKYNSANGIESYEIQWISKASAAQRAGRAGRTAP----GHCYRLYSSAVFNN-- 540 (764)
Q Consensus 467 lsTNIAEtSITIpdV~~VID~G~~K~~~yd~~~~~~~l~~~~iSkasa~QR~GRAGR~~~----G~cyrLys~~~~~~-- 540 (764)
|||.-.|-||||-+|..||- |.++.+++++. ||.||||+--. |+.|...-.+..+.
T Consensus 309 V~TSSLELGIDiG~vdlVIq--------~~SP~sV~r~l----------QRiGRsgHr~~~~Skg~ii~~~r~dllE~~v 370 (814)
T COG1201 309 VATSSLELGIDIGDIDLVIQ--------LGSPKSVNRFL----------QRIGRAGHRLGEVSKGIIIAEDRDDLLECLV 370 (814)
T ss_pred EEccchhhccccCCceEEEE--------eCCcHHHHHHh----------HhccccccccCCcccEEEEecCHHHHHHHHH
Confidence 99999999999999999994 76666655555 99999996433 55554442111110
Q ss_pred -----cCCCCCCCcccccChhhHHHHHHHcCCCCCC-----------CCCCCCCCCHHHHHHHHHHHHH
Q 038192 541 -----ILPDFSCAEISKVPVDGVVLLMKSMNIDKVS-----------NFPFPTPPEVTALVEAERCLKA 593 (764)
Q Consensus 541 -----~l~~~~~PEI~r~~L~~~~L~lk~l~~~~~~-----------~f~~~~pP~~~~i~~ai~~L~~ 593 (764)
.--....++|..-||+-+.=|+-.+-+.... .+||-+= +.+.+.+.+++|..
T Consensus 371 i~~~a~~g~le~~~i~~~~LDVLaq~ivg~~~~~~~~~~~~y~~vrraypy~~L-~~e~f~~v~~~l~~ 438 (814)
T COG1201 371 LADLALEGKLERIKIPKNPLDVLAQQIVGMALEKVWEVEEAYRVVRRAYPYADL-SREDFRLVLRYLAG 438 (814)
T ss_pred HHHHHHhCCcccCCCCCcchhHHHHHHHHHHhhCcCCHHHHHHHHHhccccccC-CHHHHHHHHHHHhh
Confidence 0123346888889998777666554433211 1122222 45667777787777
No 70
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=99.72 E-value=5e-16 Score=181.75 Aligned_cols=108 Identities=19% Similarity=0.182 Sum_probs=75.5
Q ss_pred hhcCCCchhhHHHHHHHHHcCCeEEEEecCCCCccccHHHHHHHhccCCCCCCCCCceEEEecccHHHHHHHHHHHHHHh
Q 038192 30 NRKDLPIVMMEQEIMEAVNDNSAVIICGETGCGKTTQVPQFLFEAGFGSNRCSSRSGRIGVTQPRRVAVLATAKRVAFEL 109 (764)
Q Consensus 30 ~R~~LPi~~~~~~Il~~l~~~~vviI~GeTGSGKTTqvPq~Lle~~~~~~~~~~~~~~Ii~tQPRRiaAisvA~RVa~E~ 109 (764)
.++.|=+..+.-+++.++.-++-.|+...||+|||......++.+.... ..++|.-|.|.+|.+.|+.+. ..
T Consensus 63 ~~R~lglrpydVQlig~l~l~~G~Iaem~TGeGKTLta~Lpa~l~aL~g-------~~V~VVTpn~yLA~Rdae~m~-~l 134 (762)
T TIGR03714 63 DKRVLGMFPYDVQVLGAIVLHQGNIAEMKTGEGKTLTATMPLYLNALTG-------KGAMLVTTNDYLAKRDAEEMG-PV 134 (762)
T ss_pred HHhhcCCCccHHHHHHHHHhcCCceeEecCCcchHHHHHHHHHHHhhcC-------CceEEeCCCHHHHHHHHHHHH-HH
Confidence 3567777888888888887777789999999999986544455444432 257888999998888877543 33
Q ss_pred CCCCCCEeeEEecc------C---cccCCCceEEEEchHHH-HHHH
Q 038192 110 GLHLGKEVGFQVRH------D---KKIGDSCSIKFMTDGIL-LREL 145 (764)
Q Consensus 110 g~~lG~~VGY~ir~------e---~~~s~~t~I~f~T~GiL-Lr~l 145 (764)
...+|-+||..+.. . .+....+.|+|+|+|.| .+.|
T Consensus 135 ~~~LGLsv~~~~~~s~~~~~~~~~rr~~y~~dIvygTp~~LgfDyL 180 (762)
T TIGR03714 135 YEWLGLTVSLGVVDDPDEEYDANEKRKIYNSDIVYTTNSALGFDYL 180 (762)
T ss_pred HhhcCCcEEEEECCCCccccCHHHHHHhCCCCEEEECchhhhhhHH
Confidence 44567778765542 1 11124689999999999 4433
No 71
>PF04408 HA2: Helicase associated domain (HA2); InterPro: IPR007502 This presumed domain is about 90 amino acid residues in length. It is found as a diverse set of RNA helicases. Its function is unknown, however it seems likely to be involved in nucleic acid binding.; GO: 0004386 helicase activity; PDB: 3I4U_A 2XAU_B 3KX2_B.
Probab=99.70 E-value=1.5e-17 Score=150.32 Aligned_cols=102 Identities=39% Similarity=0.468 Sum_probs=63.1
Q ss_pred HHHHHHHHcccccCCCCccHHHHHHhcCCCChHHHHHHHHHHhhhhhhhhhhhccchhhhHHhhhcccCCcceeeccccc
Q 038192 586 EAERCLKALEALDSNGRLTALGKAMAHYPMSPRHSRMLLTLIQTMKVKSYARANLVLGYGVAAAAALSVSNPFVLQLEGT 665 (764)
Q Consensus 586 ~ai~~L~~lgAld~~~~LT~LG~~la~LPvdp~lgkmLl~~~~~~~~~~~~~~~~~l~~~~~iaA~ls~~~~F~~p~~~~ 665 (764)
+|++.|+.+||||++++||++|+.|++||++|++||||++|..+ +|+.++++|||+||+++||..|.+..
T Consensus 1 ~A~~~L~~Lgald~~~~lT~lG~~~~~lPl~p~~a~~Ll~~~~~----------~~~~~~~~iaa~ls~~~~f~~~~~~~ 70 (102)
T PF04408_consen 1 KALELLKSLGALDENGNLTPLGRKMSQLPLDPRLAKMLLYGIQF----------GCLDEALIIAAILSVRSPFINPDDKE 70 (102)
T ss_dssp -HHHHHHHTTSB-TTS-B-HHHHHHTTSSS-HHHHHHHHHHHHC----------T-HHHHHHHHHHHTSS--B---CCGH
T ss_pred CHHHHHHHCCCCCCCCCcCHHHHHHHHCCCchHhHhHhhhcccc----------ccHHHHHHHHHHHcCCCcccCccHHH
Confidence 48899999999999999999999999999999999999988653 57889999999999999999864321
Q ss_pred cCCCCCchhhhhcccCCCCChhhHHHHhhhhhHHHHHHHHHhhcCCCCCcHHHHH
Q 038192 666 QTNSNDSELEERDNALDSEDPMCRQEKLGKRKLKEVAKLSHAKFSNPTSDVLTVA 720 (764)
Q Consensus 666 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~f~~~~sD~lt~l 720 (764)
. .+.+...+.+-.....+..|.+..|||+|+|
T Consensus 71 ----------------------~-~~~~~~~~~~~~~~~~~~~~~~~~sDhltlL 102 (102)
T PF04408_consen 71 ----------------------E-NAEQDNAKKKFRIKQARKKFSDDESDHLTLL 102 (102)
T ss_dssp ----------------------H-HHHH--HHHTT----------BTTBHHHHHH
T ss_pred ----------------------H-HHHHHHHHHHhhhhhcccccCCCCCCHHhcC
Confidence 0 0000000011123455667789999999986
No 72
>COG1204 Superfamily II helicase [General function prediction only]
Probab=99.70 E-value=3.1e-16 Score=186.13 Aligned_cols=426 Identities=20% Similarity=0.198 Sum_probs=238.7
Q ss_pred hHHHHHHHHHcCCeEEEEecCCCCccccHHHHHHHhccCCCCCCCCCceEEEecccHHHHHHHHHHHHHHhCCCCCCEee
Q 038192 39 MEQEIMEAVNDNSAVIICGETGCGKTTQVPQFLFEAGFGSNRCSSRSGRIGVTQPRRVAVLATAKRVAFELGLHLGKEVG 118 (764)
Q Consensus 39 ~~~~Il~~l~~~~vviI~GeTGSGKTTqvPq~Lle~~~~~~~~~~~~~~Ii~tQPRRiaAisvA~RVa~E~g~~lG~~VG 118 (764)
+++.+-..+..+..++|+++||||||..--..++......+ .+++-+.|.|-+|-..++... +=+.+|-.|+
T Consensus 36 qq~av~~~~~~~~N~li~aPTgsGKTlIA~lai~~~l~~~~------~k~vYivPlkALa~Ek~~~~~--~~~~~GirV~ 107 (766)
T COG1204 36 QQEAVEKGLLSDENVLISAPTGSGKTLIALLAILSTLLEGG------GKVVYIVPLKALAEEKYEEFS--RLEELGIRVG 107 (766)
T ss_pred HHHHhhccccCCCcEEEEcCCCCchHHHHHHHHHHHHHhcC------CcEEEEeChHHHHHHHHHHhh--hHHhcCCEEE
Confidence 34445455556788999999999999765555554432211 589999999998888877776 2244566665
Q ss_pred EEeccCcccC---CCceEEEEchHHHHHHHHH-----------HHHHHHHHHhh--c-ccc----CCccCCCCceEEEee
Q 038192 119 FQVRHDKKIG---DSCSIKFMTDGILLRELKA-----------LYEKQQQLLRS--G-QCI----EPKDRVFPLKLILMS 177 (764)
Q Consensus 119 Y~ir~e~~~s---~~t~I~f~T~GiLLr~l~~-----------i~de~~~~l~~--~-~~~----~~~~~~~~lKlILMS 177 (764)
-..+--.... .++.|+++|+.-+=-.++. |+||.|..-.. | .+. ......+..|+|-.|
T Consensus 108 ~~TgD~~~~~~~l~~~~ViVtT~EK~Dsl~R~~~~~~~~V~lvViDEiH~l~d~~RG~~lE~iv~r~~~~~~~~rivgLS 187 (766)
T COG1204 108 ISTGDYDLDDERLARYDVIVTTPEKLDSLTRKRPSWIEEVDLVVIDEIHLLGDRTRGPVLESIVARMRRLNELIRIVGLS 187 (766)
T ss_pred EecCCcccchhhhccCCEEEEchHHhhHhhhcCcchhhcccEEEEeeeeecCCcccCceehhHHHHHHhhCcceEEEEEe
Confidence 4443222222 5788999999654322211 44666542111 1 010 111233558999999
Q ss_pred ccc-chhhhccccCCCCCCCeeeeCCcccce----------eEEecCCCch---hhHHHHHHHHHHHHhhcCCCCCeEEe
Q 038192 178 ATL-RVEDFISGGRLFRNPPIIEVPTRQFPV----------TVHFSKRTEI---VDYIGQAYKKVMSIHKRLPQGGILVF 243 (764)
Q Consensus 178 ATl-~~~~f~~~~~~f~~~~vi~i~gr~~pV----------~~~y~~~~~~---~d~l~~~~~~v~~i~~~~~~g~ilvF 243 (764)
||+ +.+.++ .+.+..++ . +.-+|+ +.++...... ...-..++..+..-+ ...|.+|||
T Consensus 188 ATlpN~~evA---~wL~a~~~-~--~~~rp~~l~~~v~~~~~~~~~~~~~k~~~~~~~~~~~~~v~~~~--~~~~qvLvF 259 (766)
T COG1204 188 ATLPNAEEVA---DWLNAKLV-E--SDWRPVPLRRGVPYVGAFLGADGKKKTWPLLIDNLALELVLESL--AEGGQVLVF 259 (766)
T ss_pred eecCCHHHHH---HHhCCccc-c--cCCCCcccccCCccceEEEEecCccccccccchHHHHHHHHHHH--hcCCeEEEE
Confidence 999 888887 35544322 1 111222 2222111110 011122233333333 246789999
Q ss_pred cCCHHHHHHHHHHHHHHHHHhhhhccccccCCccccCCCCCccccchhHHhHHHHHhhcCcccccccccCCCCCcccccC
Q 038192 244 VTGQREVEYLCSKLRKASKQLLVNSSKENKGNQVVADSEPNATKDINMKEINEAFEIQGYSTEQQTDRFSSYDEDQFDID 323 (764)
Q Consensus 244 ~~g~~~ie~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~ 323 (764)
++++++....++++++........ ++ ... .+..
T Consensus 260 v~sR~~a~~~A~~l~~~~~~~~~~----------------------~~--~~~-----------------------~~~~ 292 (766)
T COG1204 260 VHSRKEAEKTAKKLRIKMSATLSD----------------------DE--KIV-----------------------LDEG 292 (766)
T ss_pred EecCchHHHHHHHHHHHHhhcCCh----------------------hh--hhh-----------------------cccc
Confidence 999999999999987532211000 00 000 0000
Q ss_pred ccccccccCccchhhhhhccchhhhhhhcCCCCCCCCcccccccchhhhhHHHHHHhhcCCCCCCCccccCCCCCCCCcC
Q 038192 324 DNELDALSDSETESETEILGEDEKLVEQKCPMDGDDPVDVLKENWSLGSLKLAFEVLSGKNASGPSSQMKLSTPAIPEQC 403 (764)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilvfl~g~~~i~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 403 (764)
...+. ..+++. ..-..+..++.
T Consensus 293 a~~~~---~~~~~~------------------------------~~~~~l~e~v~------------------------- 314 (766)
T COG1204 293 ASPIL---IPETPT------------------------------SEDEELAELVL------------------------- 314 (766)
T ss_pred ccccc---cccccc------------------------------cchHHHHHHHH-------------------------
Confidence 00000 000000 00001111111
Q ss_pred CCCCCCCCCCCCCCCCCCccccccCcccCCCCCeEEEecCCCCCHHHHHhhhccCCCCceEEEEecCcccccCCCCCeEE
Q 038192 404 TELPPTPTPEQCPELSSPDVEKMGDNKRAGVGALCVLPLYAMLPAAAQLRVFEDVKEGERLVVVSTNVAETSLTIPGIKY 483 (764)
Q Consensus 404 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~pLHs~l~~~eQ~~vf~~~~~g~rKVIlsTNIAEtSITIpdV~~ 483 (764)
.-+---|++|+.++|.-+-+.|+.|+.|||+||.-...|+..|.=+.
T Consensus 315 ---------------------------------~GvafHhAGL~~~~R~~vE~~Fr~g~ikVlv~TpTLA~GVNLPA~~V 361 (766)
T COG1204 315 ---------------------------------RGVAFHHAGLPREDRQLVEDAFRKGKIKVLVSTPTLAAGVNLPARTV 361 (766)
T ss_pred ---------------------------------hCccccccCCCHHHHHHHHHHHhcCCceEEEechHHhhhcCCcceEE
Confidence 12444589999999999999999999999999999999999998777
Q ss_pred EEeCCcccceeeccCCCccccceeeccHHhHHHhccccCCCCC---CEEEEcc-CH--HHhcccCCCCCCCccccc----
Q 038192 484 VVDTGREKVKKYNSANGIESYEIQWISKASAAQRAGRAGRTAP---GHCYRLY-SS--AVFNNILPDFSCAEISKV---- 553 (764)
Q Consensus 484 VID~G~~K~~~yd~~~~~~~l~~~~iSkasa~QR~GRAGR~~~---G~cyrLy-s~--~~~~~~l~~~~~PEI~r~---- 553 (764)
||- | ...||+..| ...+++-..+|..|||||.+= |..+-+- +. ..|.........||....
T Consensus 362 IIk-~---~~~y~~~~g-----~~~i~~~dv~QM~GRAGRPg~d~~G~~~i~~~~~~~~~~~~~~~~~~~~e~~~s~l~~ 432 (766)
T COG1204 362 IIK-D---TRRYDPKGG-----IVDIPVLDVLQMAGRAGRPGYDDYGEAIILATSHDELEYLAELYIQSEPEPIESKLGD 432 (766)
T ss_pred EEe-e---eEEEcCCCC-----eEECchhhHhhccCcCCCCCcCCCCcEEEEecCccchhHHHHHhhccCcchHHHhhcc
Confidence 772 2 235777322 468999999999999999872 4444444 21 111111223444544110
Q ss_pred --ChhhHHHHHHHcCCC----CCCCC---CCCCCC------CHHHHHHHHHHHHHcc-cccCC---CCccHHHHHHhcCC
Q 038192 554 --PVDGVVLLMKSMNID----KVSNF---PFPTPP------EVTALVEAERCLKALE-ALDSN---GRLTALGKAMAHYP 614 (764)
Q Consensus 554 --~L~~~~L~lk~l~~~----~~~~f---~~~~pP------~~~~i~~ai~~L~~lg-Ald~~---~~LT~LG~~la~LP 614 (764)
.+...++.+.+.+.. ....| .|..|- ....+..+++.|.+.+ .++.. -.-|.+|+.++++-
T Consensus 433 ~~~~~~~l~~v~~~~~~v~~~~~~~f~~~t~~~~~~~~~~~~~~~i~~~~~~L~~~~~~~~~~~~~~~ate~g~~~s~~y 512 (766)
T COG1204 433 ELNLRTFLLGVISVGDAVSWLELTDFYERTFYNPQTYGEGMLREEILASLRYLEENGLILDADWEALHATELGKLVSRLY 512 (766)
T ss_pred cccchheEEEEEeccchhhHHHHHHHHHHHHhhhhhccccchHHHHHHHHHHHHhccceeeccccccchhHHHHHhhhcc
Confidence 011111111111100 00000 011111 3456778889998886 66543 37899999999999
Q ss_pred CChHHHHHHHHHH
Q 038192 615 MSPRHSRMLLTLI 627 (764)
Q Consensus 615 vdp~lgkmLl~~~ 627 (764)
++|..+|.+...+
T Consensus 513 i~~~sa~~~~~~l 525 (766)
T COG1204 513 IDPESAKIFRDLL 525 (766)
T ss_pred CCHHHHHHHHHHH
Confidence 9999999988654
No 73
>PRK13766 Hef nuclease; Provisional
Probab=99.69 E-value=4.6e-16 Score=188.86 Aligned_cols=76 Identities=32% Similarity=0.493 Sum_probs=67.5
Q ss_pred CCCCCHHHHHhhhccCCCCceEEEEecCcccccCCCCCeEEEEeCCcccceeeccCCCccccceeeccHHhHHHhccccC
Q 038192 443 YAMLPAAAQLRVFEDVKEGERLVVVSTNVAETSLTIPGIKYVVDTGREKVKKYNSANGIESYEIQWISKASAAQRAGRAG 522 (764)
Q Consensus 443 Hs~l~~~eQ~~vf~~~~~g~rKVIlsTNIAEtSITIpdV~~VID~G~~K~~~yd~~~~~~~l~~~~iSkasa~QR~GRAG 522 (764)
|++|++.+|.++++.|..|..+|++||++++.|++||++.+||. ||+.. |-..+.||+||+|
T Consensus 404 ~~~~~~~~r~~~~~~F~~g~~~vLvaT~~~~eGldi~~~~~VI~--------yd~~~----------s~~r~iQR~GR~g 465 (773)
T PRK13766 404 DKGMSQKEQIEILDKFRAGEFNVLVSTSVAEEGLDIPSVDLVIF--------YEPVP----------SEIRSIQRKGRTG 465 (773)
T ss_pred cCCCCHHHHHHHHHHHHcCCCCEEEECChhhcCCCcccCCEEEE--------eCCCC----------CHHHHHHHhcccC
Confidence 44599999999999999999999999999999999999999996 88643 4456779999999
Q ss_pred CCCCCEEEEccCHH
Q 038192 523 RTAPGHCYRLYSSA 536 (764)
Q Consensus 523 R~~~G~cyrLys~~ 536 (764)
|.++|.+|.|+++.
T Consensus 466 R~~~~~v~~l~~~~ 479 (773)
T PRK13766 466 RQEEGRVVVLIAKG 479 (773)
T ss_pred cCCCCEEEEEEeCC
Confidence 99999999999853
No 74
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.69 E-value=8.4e-17 Score=178.10 Aligned_cols=86 Identities=20% Similarity=0.332 Sum_probs=77.9
Q ss_pred CCeEEEecCCCCCHHHHHhhhccCCCCceEEEEecCcccccCCCCCeEEEEeCCcccceeeccCCCccccceeeccHHhH
Q 038192 435 GALCVLPLYAMLPAAAQLRVFEDVKEGERLVVVSTNVAETSLTIPGIKYVVDTGREKVKKYNSANGIESYEIQWISKASA 514 (764)
Q Consensus 435 ~~~~i~pLHs~l~~~eQ~~vf~~~~~g~rKVIlsTNIAEtSITIpdV~~VID~G~~K~~~yd~~~~~~~l~~~~iSkasa 514 (764)
+.+.|-..||..++.++..+++.|+.|+..|++|||+.+|||++-||..||| ||. +-|.-++
T Consensus 411 ~~i~v~vIh~e~~~~qrde~~~~FR~g~IwvLicTdll~RGiDf~gvn~VIn--------yD~----------p~s~~sy 472 (593)
T KOG0344|consen 411 DNINVDVIHGERSQKQRDETMERFRIGKIWVLICTDLLARGIDFKGVNLVIN--------YDF----------PQSDLSY 472 (593)
T ss_pred cCcceeeEecccchhHHHHHHHHHhccCeeEEEehhhhhccccccCcceEEe--------cCC----------CchhHHH
Confidence 3567888999999999999999999999999999999999999999999998 774 4566778
Q ss_pred HHhccccCCCCC-CEEEEccCHHHh
Q 038192 515 AQRAGRAGRTAP-GHCYRLYSSAVF 538 (764)
Q Consensus 515 ~QR~GRAGR~~~-G~cyrLys~~~~ 538 (764)
.||.||+||.++ |+.|.+||.+..
T Consensus 473 ihrIGRtgRag~~g~Aitfytd~d~ 497 (593)
T KOG0344|consen 473 IHRIGRTGRAGRSGKAITFYTDQDM 497 (593)
T ss_pred HHHhhccCCCCCCcceEEEeccccc
Confidence 899999999998 999999999544
No 75
>KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.66 E-value=6.4e-16 Score=164.49 Aligned_cols=157 Identities=22% Similarity=0.205 Sum_probs=108.0
Q ss_pred hHHHhhhcCCCchhhHHHHHHHHHcCCeEEEEecCCCCccccHHHHHHHhccCCCCCCCCCceEEEecccHHHHHHHHHH
Q 038192 25 NEVENNRKDLPIVMMEQEIMEAVNDNSAVIICGETGCGKTTQVPQFLFEAGFGSNRCSSRSGRIGVTQPRRVAVLATAKR 104 (764)
Q Consensus 25 ~~~~~~R~~LPi~~~~~~Il~~l~~~~vviI~GeTGSGKTTqvPq~Lle~~~~~~~~~~~~~~Ii~tQPRRiaAisvA~R 104 (764)
..+.+.--+-|...+|+-|.-.++..+ ++-.|-||||||..+-...++....... -..+.++.-|+|.+|+++-+
T Consensus 34 raI~kkg~~~ptpiqRKTipliLe~~d-vv~martgsgktaaf~ipm~e~Lk~~s~---~g~RalilsptreLa~qtlk- 108 (529)
T KOG0337|consen 34 RAIHKKGFNTPTPIQRKTIPLILEGRD-VVGMARTGSGKTAAFLIPMIEKLKSHSQ---TGLRALILSPTRELALQTLK- 108 (529)
T ss_pred HHHHHhhcCCCCchhcccccceeeccc-cceeeecCCcchhhHHHHHHHHHhhccc---cccceeeccCcHHHHHHHHH-
Confidence 345555455677778877766666666 6778999999999988878876543321 12578889999999999877
Q ss_pred HHHHhCCCCCCEeeEEeccCc------ccCCCceEEEEchHHHHHHHHH-----------HHHHHHHHHhhccccCC---
Q 038192 105 VAFELGLHLGKEVGFQVRHDK------KIGDSCSIKFMTDGILLRELKA-----------LYEKQQQLLRSGQCIEP--- 164 (764)
Q Consensus 105 Va~E~g~~lG~~VGY~ir~e~------~~s~~t~I~f~T~GiLLr~l~~-----------i~de~~~~l~~~~~~~~--- 164 (764)
|-++.|.-.+..+..-+.+++ ..+.+..|+++|||+++...-+ ++||+++.+..||....
T Consensus 109 vvkdlgrgt~lr~s~~~ggD~~eeqf~~l~~npDii~ATpgr~~h~~vem~l~l~sveyVVfdEadrlfemgfqeql~e~ 188 (529)
T KOG0337|consen 109 VVKDLGRGTKLRQSLLVGGDSIEEQFILLNENPDIIIATPGRLLHLGVEMTLTLSSVEYVVFDEADRLFEMGFQEQLHEI 188 (529)
T ss_pred HHHHhccccchhhhhhcccchHHHHHHHhccCCCEEEecCceeeeeehheeccccceeeeeehhhhHHHhhhhHHHHHHH
Confidence 556777655443332222222 3467889999999999986532 67999999888763221
Q ss_pred c-cCCCCceEEEeecccch--hhhc
Q 038192 165 K-DRVFPLKLILMSATLRV--EDFI 186 (764)
Q Consensus 165 ~-~~~~~lKlILMSATl~~--~~f~ 186 (764)
. +..-+.+.++||||+.- -.|+
T Consensus 189 l~rl~~~~QTllfSatlp~~lv~fa 213 (529)
T KOG0337|consen 189 LSRLPESRQTLLFSATLPRDLVDFA 213 (529)
T ss_pred HHhCCCcceEEEEeccCchhhHHHH
Confidence 1 22235699999999953 3565
No 76
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=99.66 E-value=5.9e-15 Score=174.31 Aligned_cols=89 Identities=28% Similarity=0.260 Sum_probs=71.1
Q ss_pred eEEEecCCCCCHHHHHhhhccCCCCceEEEEecCcccccCCC---CCeE-----EEEeCCcccceeeccCCCccccceee
Q 038192 437 LCVLPLYAMLPAAAQLRVFEDVKEGERLVVVSTNVAETSLTI---PGIK-----YVVDTGREKVKKYNSANGIESYEIQW 508 (764)
Q Consensus 437 ~~i~pLHs~l~~~eQ~~vf~~~~~g~rKVIlsTNIAEtSITI---pdV~-----~VID~G~~K~~~yd~~~~~~~l~~~~ 508 (764)
+.+..|||.+...++..+.....+| +|+||||+|.||++| |+|. +||++.+ |
T Consensus 453 i~~~~L~~~~~~~e~~~i~~ag~~g--~VlIATdmAgRG~DI~l~~~V~~~GGL~VI~~d~------------------p 512 (790)
T PRK09200 453 IPHNLLNAKNAAKEAQIIAEAGQKG--AVTVATNMAGRGTDIKLGEGVHELGGLAVIGTER------------------M 512 (790)
T ss_pred CCEEEecCCccHHHHHHHHHcCCCC--eEEEEccchhcCcCCCcccccccccCcEEEeccC------------------C
Confidence 4577899999988888888877666 799999999999999 7999 9997443 3
Q ss_pred ccHHhHHHhccccCCCCC-CEEEEccCHHHhcccCCCCCC
Q 038192 509 ISKASAAQRAGRAGRTAP-GHCYRLYSSAVFNNILPDFSC 547 (764)
Q Consensus 509 iSkasa~QR~GRAGR~~~-G~cyrLys~~~~~~~l~~~~~ 547 (764)
-|...+.||+|||||.|. |.|+-+++.++. +|..|..
T Consensus 513 ~s~r~y~qr~GRtGR~G~~G~s~~~is~eD~--l~~~~~~ 550 (790)
T PRK09200 513 ESRRVDLQLRGRSGRQGDPGSSQFFISLEDD--LLKRFAP 550 (790)
T ss_pred CCHHHHHHhhccccCCCCCeeEEEEEcchHH--HHHhhcc
Confidence 345566799999999995 999999997653 4544443
No 77
>PRK09694 helicase Cas3; Provisional
Probab=99.65 E-value=3.7e-15 Score=178.84 Aligned_cols=68 Identities=26% Similarity=0.357 Sum_probs=53.3
Q ss_pred eEEEecCCCCCHHHH----HhhhccC-CCCce---EEEEecCcccccCCCCCeEEEEeCCcccceeeccCCCccccceee
Q 038192 437 LCVLPLYAMLPAAAQ----LRVFEDV-KEGER---LVVVSTNVAETSLTIPGIKYVVDTGREKVKKYNSANGIESYEIQW 508 (764)
Q Consensus 437 ~~i~pLHs~l~~~eQ----~~vf~~~-~~g~r---KVIlsTNIAEtSITIpdV~~VID~G~~K~~~yd~~~~~~~l~~~~ 508 (764)
..+..+||.++..+| +++++.+ ++|+| +|+|||+|+|.|||| |+.+||. + -
T Consensus 588 ~~v~llHsrf~~~dR~~~E~~vl~~fgk~g~r~~~~ILVaTQViE~GLDI-d~DvlIt--------d------------l 646 (878)
T PRK09694 588 VDIDLFHARFTLNDRREKEQRVIENFGKNGKRNQGRILVATQVVEQSLDL-DFDWLIT--------Q------------L 646 (878)
T ss_pred ceEEEEeCCCCHHHHHHHHHHHHHHHHhcCCcCCCeEEEECcchhheeec-CCCeEEE--------C------------C
Confidence 468899999999998 4566666 55654 799999999999999 5777773 1 1
Q ss_pred ccHHhHHHhccccCCCC
Q 038192 509 ISKASAAQRAGRAGRTA 525 (764)
Q Consensus 509 iSkasa~QR~GRAGR~~ 525 (764)
....++.||+||+||.+
T Consensus 647 aPidsLiQRaGR~~R~~ 663 (878)
T PRK09694 647 CPVDLLFQRLGRLHRHH 663 (878)
T ss_pred CCHHHHHHHHhccCCCC
Confidence 22467889999999974
No 78
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=99.65 E-value=1.4e-15 Score=182.91 Aligned_cols=156 Identities=19% Similarity=0.197 Sum_probs=113.2
Q ss_pred hcCCCchhhHHHHHHHHHcCCeEEEEecCCCCccccHHHHHHHhccCCCCCCCCCceEEEecccHHHHHHHHHHHHHHhC
Q 038192 31 RKDLPIVMMEQEIMEAVNDNSAVIICGETGCGKTTQVPQFLFEAGFGSNRCSSRSGRIGVTQPRRVAVLATAKRVAFELG 110 (764)
Q Consensus 31 R~~LPi~~~~~~Il~~l~~~~vviI~GeTGSGKTTqvPq~Lle~~~~~~~~~~~~~~Ii~tQPRRiaAisvA~RVa~E~g 110 (764)
|--...|.||.+-++.+.+++.|||+.+||||||-.+-.+|+++...... .+.++.-|++-+|..-++|+.+...
T Consensus 66 ~g~~~lY~HQ~~A~~~~~~G~~vvVtTgTgSGKTe~FllPIld~~l~~~~-----a~AL~lYPtnALa~DQ~~rl~~~~~ 140 (851)
T COG1205 66 AGIERLYSHQVDALRLIREGRNVVVTTGTGSGKTESFLLPILDHLLRDPS-----ARALLLYPTNALANDQAERLRELIS 140 (851)
T ss_pred hccccccHHHHHHHHHHHCCCCEEEECCCCCchhHHHHHHHHHHHhhCcC-----ccEEEEechhhhHhhHHHHHHHHHH
Confidence 33445899999999999999999999999999999998899998876654 4789999999999999999987654
Q ss_pred CCCCCEeeEEe-----ccCcc---cCCCceEEEEchHHHHHHHHH---------------HHHHHHH----------HHh
Q 038192 111 LHLGKEVGFQV-----RHDKK---IGDSCSIKFMTDGILLRELKA---------------LYEKQQQ----------LLR 157 (764)
Q Consensus 111 ~~lG~~VGY~i-----r~e~~---~s~~t~I~f~T~GiLLr~l~~---------------i~de~~~----------~l~ 157 (764)
. +|..|+..+ ..+.+ ....++|++.||-||-.++.. |+||.|. ++.
T Consensus 141 ~-~~~~v~~~~y~Gdt~~~~r~~~~~~pp~IllTNpdMLh~~llr~~~~~~~~~~~Lk~lVvDElHtYrGv~GS~vA~ll 219 (851)
T COG1205 141 D-LPGKVTFGRYTGDTPPEERRAIIRNPPDILLTNPDMLHYLLLRNHDAWLWLLRNLKYLVVDELHTYRGVQGSEVALLL 219 (851)
T ss_pred h-CCCcceeeeecCCCChHHHHHHHhCCCCEEEeCHHHHHHHhccCcchHHHHHhcCcEEEEecceeccccchhHHHHHH
Confidence 3 343444333 11112 245789999999999886621 5577762 122
Q ss_pred hccccCCccCCCCceEEEeeccc-chhhhccccCCCCC
Q 038192 158 SGQCIEPKDRVFPLKLILMSATL-RVEDFISGGRLFRN 194 (764)
Q Consensus 158 ~~~~~~~~~~~~~lKlILMSATl-~~~~f~~~~~~f~~ 194 (764)
..++..+..-..++++|.+|||+ +...|.+ .+|+.
T Consensus 220 RRL~~~~~~~~~~~q~i~~SAT~~np~e~~~--~l~~~ 255 (851)
T COG1205 220 RRLLRRLRRYGSPLQIICTSATLANPGEFAE--ELFGR 255 (851)
T ss_pred HHHHHHHhccCCCceEEEEeccccChHHHHH--HhcCC
Confidence 22222222223589999999999 7777775 57665
No 79
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=99.62 E-value=1.5e-14 Score=168.55 Aligned_cols=87 Identities=23% Similarity=0.151 Sum_probs=68.6
Q ss_pred EEEecCCCCCHHHHHhhhccCCCCceEEEEecCcccccCCCCC-------eEEEEeCCcccceeeccCCCccccceeecc
Q 038192 438 CVLPLYAMLPAAAQLRVFEDVKEGERLVVVSTNVAETSLTIPG-------IKYVVDTGREKVKKYNSANGIESYEIQWIS 510 (764)
Q Consensus 438 ~i~pLHs~l~~~eQ~~vf~~~~~g~rKVIlsTNIAEtSITIpd-------V~~VID~G~~K~~~yd~~~~~~~l~~~~iS 510 (764)
....||+. +.++...+..+..+.-.|.||||+|.||++|+. .-|||.+.+ +-|
T Consensus 431 ~~~~Lna~--q~~rEa~ii~~ag~~g~VtIATnmAgRGtDI~l~~V~~~GGl~VI~t~~------------------p~s 490 (745)
T TIGR00963 431 PHNVLNAK--NHEREAEIIAQAGRKGAVTIATNMAGRGTDIKLEEVKELGGLYVIGTER------------------HES 490 (745)
T ss_pred CeEEeeCC--hHHHHHHHHHhcCCCceEEEEeccccCCcCCCccchhhcCCcEEEecCC------------------CCc
Confidence 34567887 778888888888888999999999999999998 449997554 345
Q ss_pred HHhHHHhccccCCCCC-CEEEEccCHHHhcccCCCCC
Q 038192 511 KASAAQRAGRAGRTAP-GHCYRLYSSAVFNNILPDFS 546 (764)
Q Consensus 511 kasa~QR~GRAGR~~~-G~cyrLys~~~~~~~l~~~~ 546 (764)
+-...||+|||||.|. |.+.-+.|.++- +|..|.
T Consensus 491 ~ri~~q~~GRtGRqG~~G~s~~~ls~eD~--l~~~~~ 525 (745)
T TIGR00963 491 RRIDNQLRGRSGRQGDPGSSRFFLSLEDN--LMRIFG 525 (745)
T ss_pred HHHHHHHhccccCCCCCcceEEEEeccHH--HHHhhh
Confidence 5566799999999996 999988887653 344443
No 80
>PRK05580 primosome assembly protein PriA; Validated
Probab=99.62 E-value=2.8e-15 Score=177.92 Aligned_cols=145 Identities=18% Similarity=0.139 Sum_probs=92.7
Q ss_pred CchhhHHHHHHHHHc---CCeEEEEecCCCCccccHHHHHHHhccCCCCCCCCCceEEEecccHHHHHHHHHHHHHHhCC
Q 038192 35 PIVMMEQEIMEAVND---NSAVIICGETGCGKTTQVPQFLFEAGFGSNRCSSRSGRIGVTQPRRVAVLATAKRVAFELGL 111 (764)
Q Consensus 35 Pi~~~~~~Il~~l~~---~~vviI~GeTGSGKTTqvPq~Lle~~~~~~~~~~~~~~Ii~tQPRRiaAisvA~RVa~E~g~ 111 (764)
.....+++.++.+.+ ++++++.|+||||||...-+.+.+.. ..+ .++++.-|++..|.++++++.+.+|.
T Consensus 144 ~Lt~~Q~~ai~~i~~~~~~~~~Ll~~~TGSGKT~v~l~~i~~~l-~~g------~~vLvLvPt~~L~~Q~~~~l~~~fg~ 216 (679)
T PRK05580 144 TLNPEQAAAVEAIRAAAGFSPFLLDGVTGSGKTEVYLQAIAEVL-AQG------KQALVLVPEIALTPQMLARFRARFGA 216 (679)
T ss_pred CCCHHHHHHHHHHHhccCCCcEEEECCCCChHHHHHHHHHHHHH-HcC------CeEEEEeCcHHHHHHHHHHHHHHhCC
Confidence 356677788888876 47899999999999987766555432 222 47899999999999999999887665
Q ss_pred CCCCEeeEEe---ccC---cccCCCceEEEEchHHHHHHHHH----HHHHHHHHHhhcc---c------cCCccCCCCce
Q 038192 112 HLGKEVGFQV---RHD---KKIGDSCSIKFMTDGILLRELKA----LYEKQQQLLRSGQ---C------IEPKDRVFPLK 172 (764)
Q Consensus 112 ~lG~~VGY~i---r~e---~~~s~~t~I~f~T~GiLLr~l~~----i~de~~~~l~~~~---~------~~~~~~~~~lK 172 (764)
.+....|..- |.+ .......+|+++|++.+..-+.. |+||.|..-.... . ........+.+
T Consensus 217 ~v~~~~s~~s~~~r~~~~~~~~~g~~~IVVgTrsal~~p~~~l~liVvDEeh~~s~~~~~~p~y~~r~va~~ra~~~~~~ 296 (679)
T PRK05580 217 PVAVLHSGLSDGERLDEWRKAKRGEAKVVIGARSALFLPFKNLGLIIVDEEHDSSYKQQEGPRYHARDLAVVRAKLENIP 296 (679)
T ss_pred CEEEEECCCCHHHHHHHHHHHHcCCCCEEEeccHHhcccccCCCEEEEECCCccccccCcCCCCcHHHHHHHHhhccCCC
Confidence 4322222110 000 01123578999999988654432 4566553211100 0 00012245789
Q ss_pred EEEeecccchhhhc
Q 038192 173 LILMSATLRVEDFI 186 (764)
Q Consensus 173 lILMSATl~~~~f~ 186 (764)
+|++|||...+.+.
T Consensus 297 ~il~SATps~~s~~ 310 (679)
T PRK05580 297 VVLGSATPSLESLA 310 (679)
T ss_pred EEEEcCCCCHHHHH
Confidence 99999999887765
No 81
>KOG0354 consensus DEAD-box like helicase [General function prediction only]
Probab=99.61 E-value=1.7e-14 Score=166.00 Aligned_cols=74 Identities=30% Similarity=0.437 Sum_probs=67.8
Q ss_pred CCCCHHHHHhhhccCCCCceEEEEecCcccccCCCCCeEEEEeCCcccceeeccCCCccccceeeccHHhHHHhccccCC
Q 038192 444 AMLPAAAQLRVFEDVKEGERLVVVSTNVAETSLTIPGIKYVVDTGREKVKKYNSANGIESYEIQWISKASAAQRAGRAGR 523 (764)
Q Consensus 444 s~l~~~eQ~~vf~~~~~g~rKVIlsTNIAEtSITIpdV~~VID~G~~K~~~yd~~~~~~~l~~~~iSkasa~QR~GRAGR 523 (764)
.+|++.+|+.+++.|.+|..+|+|||.|||=||+|+.|..|| .||..++--.++ ||+|| ||
T Consensus 456 ~gmtqk~Q~evl~~Fr~G~~NvLVATSV~EEGLDI~ec~lVI--------cYd~~snpIrmI----------QrrGR-gR 516 (746)
T KOG0354|consen 456 TGMTQKEQKEVLDKFRDGEINVLVATSVAEEGLDIGECNLVI--------CYDYSSNPIRMV----------QRRGR-GR 516 (746)
T ss_pred cccCHHHHHHHHHHHhCCCccEEEEecchhccCCcccccEEE--------EecCCccHHHHH----------HHhcc-cc
Confidence 689999999999999999999999999999999999999999 588777754444 99999 99
Q ss_pred CCCCEEEEccCHH
Q 038192 524 TAPGHCYRLYSSA 536 (764)
Q Consensus 524 ~~~G~cyrLys~~ 536 (764)
...|.||.|++..
T Consensus 517 a~ns~~vll~t~~ 529 (746)
T KOG0354|consen 517 ARNSKCVLLTTGS 529 (746)
T ss_pred ccCCeEEEEEcch
Confidence 9999999999953
No 82
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=99.61 E-value=1.4e-14 Score=158.61 Aligned_cols=75 Identities=28% Similarity=0.476 Sum_probs=67.9
Q ss_pred CCCCHHHHHhhhccCCCCceEEEEecCcccccCCCCCeEEEEeCCcccceeeccCCCccccceeeccHHhHHHhccccCC
Q 038192 444 AMLPAAAQLRVFEDVKEGERLVVVSTNVAETSLTIPGIKYVVDTGREKVKKYNSANGIESYEIQWISKASAAQRAGRAGR 523 (764)
Q Consensus 444 s~l~~~eQ~~vf~~~~~g~rKVIlsTNIAEtSITIpdV~~VID~G~~K~~~yd~~~~~~~l~~~~iSkasa~QR~GRAGR 523 (764)
.+|++.+|.++.+.|+.|...|+|||.|||-||+||+|.+|| .|+|.-. -=-..||+||+||
T Consensus 407 ~GMsQkeQ~eiI~~Fr~Ge~nVLVaTSVgEEGLDIp~vDlVi--------fYEpvpS----------eIR~IQR~GRTGR 468 (542)
T COG1111 407 KGMSQKEQKEIIDQFRKGEYNVLVATSVGEEGLDIPEVDLVI--------FYEPVPS----------EIRSIQRKGRTGR 468 (542)
T ss_pred cccCHHHHHHHHHHHhcCCceEEEEcccccccCCCCcccEEE--------EecCCcH----------HHHHHHhhCcccc
Confidence 589999999999999999999999999999999999999999 6887542 2335699999999
Q ss_pred CCCCEEEEccCHH
Q 038192 524 TAPGHCYRLYSSA 536 (764)
Q Consensus 524 ~~~G~cyrLys~~ 536 (764)
.++|..|-|.++.
T Consensus 469 ~r~Grv~vLvt~g 481 (542)
T COG1111 469 KRKGRVVVLVTEG 481 (542)
T ss_pred CCCCeEEEEEecC
Confidence 9999999999986
No 83
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=99.60 E-value=4.9e-14 Score=163.30 Aligned_cols=96 Identities=18% Similarity=0.083 Sum_probs=67.5
Q ss_pred CchhhHHHHHHHHHcCCeEEEEecCCCCccccHHHHHHHhccCCCCCCCCCceEEEecccHHHHHHHHHHHHHHhCCCCC
Q 038192 35 PIVMMEQEIMEAVNDNSAVIICGETGCGKTTQVPQFLFEAGFGSNRCSSRSGRIGVTQPRRVAVLATAKRVAFELGLHLG 114 (764)
Q Consensus 35 Pi~~~~~~Il~~l~~~~vviI~GeTGSGKTTqvPq~Lle~~~~~~~~~~~~~~Ii~tQPRRiaAisvA~RVa~E~g~~lG 114 (764)
|-..+...++-.+ .++ |....||+|||..+...++...... ..+.|.-|+|.+|.+.++.+. .+...+|
T Consensus 104 p~~VQ~~~~~~ll-~G~--Iae~~TGeGKTla~~lp~~~~al~G-------~~v~VvTptreLA~qdae~~~-~l~~~lG 172 (656)
T PRK12898 104 HFDVQLMGGLALL-SGR--LAEMQTGEGKTLTATLPAGTAALAG-------LPVHVITVNDYLAERDAELMR-PLYEALG 172 (656)
T ss_pred CChHHHHHHHHHh-CCC--eeeeeCCCCcHHHHHHHHHHHhhcC-------CeEEEEcCcHHHHHHHHHHHH-HHHhhcC
Confidence 4444444455444 444 8899999999998777777665432 478899999999999988554 3445678
Q ss_pred CEeeEEeccCcc----cCCCceEEEEchHHH
Q 038192 115 KEVGFQVRHDKK----IGDSCSIKFMTDGIL 141 (764)
Q Consensus 115 ~~VGY~ir~e~~----~s~~t~I~f~T~GiL 141 (764)
-+||.-+...+. ..-.++|+|+|++=|
T Consensus 173 lsv~~i~gg~~~~~r~~~y~~dIvygT~~e~ 203 (656)
T PRK12898 173 LTVGCVVEDQSPDERRAAYGADITYCTNKEL 203 (656)
T ss_pred CEEEEEeCCCCHHHHHHHcCCCEEEECCCch
Confidence 888877665432 124678999999744
No 84
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=99.59 E-value=3.9e-15 Score=168.99 Aligned_cols=84 Identities=30% Similarity=0.394 Sum_probs=75.4
Q ss_pred CCeEEEecCCCCCHHHHHhhhccCCCCceEEEEecCcccccCCCCCeEEEEeCCcccceeeccCC-CccccceeeccHHh
Q 038192 435 GALCVLPLYAMLPAAAQLRVFEDVKEGERLVVVSTNVAETSLTIPGIKYVVDTGREKVKKYNSAN-GIESYEIQWISKAS 513 (764)
Q Consensus 435 ~~~~i~pLHs~l~~~eQ~~vf~~~~~g~rKVIlsTNIAEtSITIpdV~~VID~G~~K~~~yd~~~-~~~~l~~~~iSkas 513 (764)
+++.|-.+||.|+++|+..|++.|+.|...|+|||.|.|-||++||.+..| .+|+.+ |++.|.
T Consensus 506 ~~~~vgL~HGrm~~~eKd~vM~~Fk~~e~~ILVaTTVIEVGVdVPnATvMV--------Ie~AERFGLaQLH-------- 569 (677)
T COG1200 506 PELKVGLVHGRMKPAEKDAVMEAFKEGEIDILVATTVIEVGVDVPNATVMV--------IENAERFGLAQLH-------- 569 (677)
T ss_pred ccceeEEEecCCChHHHHHHHHHHHcCCCcEEEEeeEEEecccCCCCeEEE--------EechhhhhHHHHH--------
Confidence 467899999999999999999999999999999999999999999999877 477665 676666
Q ss_pred HHHhccccCCCCC-CEEEEccCHH
Q 038192 514 AAQRAGRAGRTAP-GHCYRLYSSA 536 (764)
Q Consensus 514 a~QR~GRAGR~~~-G~cyrLys~~ 536 (764)
|=+||.||... ++||-+|...
T Consensus 570 --QLRGRVGRG~~qSyC~Ll~~~~ 591 (677)
T COG1200 570 --QLRGRVGRGDLQSYCVLLYKPP 591 (677)
T ss_pred --HhccccCCCCcceEEEEEeCCC
Confidence 99999999886 9999998764
No 85
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=99.56 E-value=6.9e-14 Score=153.82 Aligned_cols=370 Identities=21% Similarity=0.268 Sum_probs=231.0
Q ss_pred HHcCCeEEEEecCCCCcccc-----HHHHHHHhccCCCCCCCCCceEEEecccHHHHHHHHHHHHHHhCCCCCCEeeEEe
Q 038192 47 VNDNSAVIICGETGCGKTTQ-----VPQFLFEAGFGSNRCSSRSGRIGVTQPRRVAVLATAKRVAFELGLHLGKEVGFQV 121 (764)
Q Consensus 47 l~~~~vviI~GeTGSGKTTq-----vPq~Lle~~~~~~~~~~~~~~Ii~tQPRRiaAisvA~RVa~E~g~~lG~~VGY~i 121 (764)
+.+++..+|...|+||||.. +|..| ..+ .+.+...|-=..|-|=.+.. .++=.++|-.|.-+|
T Consensus 229 LLeG~nllVVSaTasGKTLIgElAGi~~~l-----~~g------~KmlfLvPLVALANQKy~dF-~~rYs~LglkvairV 296 (830)
T COG1202 229 LLEGENLLVVSATASGKTLIGELAGIPRLL-----SGG------KKMLFLVPLVALANQKYEDF-KERYSKLGLKVAIRV 296 (830)
T ss_pred cccCCceEEEeccCCCcchHHHhhCcHHHH-----hCC------CeEEEEehhHHhhcchHHHH-HHHhhcccceEEEEe
Confidence 45567788889999999943 33322 111 47888888755555544433 344467887665555
Q ss_pred ccCc----------ccCCCceEEEEchH---HHHHHH---HH----HHHHHHHHH-------hhccccCCccCCCCceEE
Q 038192 122 RHDK----------KIGDSCSIKFMTDG---ILLREL---KA----LYEKQQQLL-------RSGQCIEPKDRVFPLKLI 174 (764)
Q Consensus 122 r~e~----------~~s~~t~I~f~T~G---iLLr~l---~~----i~de~~~~l-------~~~~~~~~~~~~~~lKlI 174 (764)
.... .++.+.+|+++|-. .|||.= .+ ++||.|.+- ++|+...+....|+-|+|
T Consensus 297 G~srIk~~~~pv~~~t~~dADIIVGTYEGiD~lLRtg~~lgdiGtVVIDEiHtL~deERG~RLdGLI~RLr~l~~~AQ~i 376 (830)
T COG1202 297 GMSRIKTREEPVVVDTSPDADIIVGTYEGIDYLLRTGKDLGDIGTVVIDEIHTLEDEERGPRLDGLIGRLRYLFPGAQFI 376 (830)
T ss_pred chhhhcccCCccccCCCCCCcEEEeechhHHHHHHcCCcccccceEEeeeeeeccchhcccchhhHHHHHHHhCCCCeEE
Confidence 4322 23467899999963 344431 11 456655321 123322233345789999
Q ss_pred Eeeccc-chhhhccccCCCCCCCeeeeCCcccceeEE--ecC-CCchhhHHHHHHHHHHH-HhhcCCCCCeEEecCCHHH
Q 038192 175 LMSATL-RVEDFISGGRLFRNPPIIEVPTRQFPVTVH--FSK-RTEIVDYIGQAYKKVMS-IHKRLPQGGILVFVTGQRE 249 (764)
Q Consensus 175 LMSATl-~~~~f~~~~~~f~~~~vi~i~gr~~pV~~~--y~~-~~~~~d~l~~~~~~v~~-i~~~~~~g~ilvF~~g~~~ 249 (764)
-.|||+ |.+.++ ++++ +..+.-.+|..|.+-| |.. +...-+.+....+.-.+ ..+.--.|+.+||..+.+.
T Consensus 377 ~LSATVgNp~elA---~~l~-a~lV~y~~RPVplErHlvf~~~e~eK~~ii~~L~k~E~~~~sskg~rGQtIVFT~SRrr 452 (830)
T COG1202 377 YLSATVGNPEELA---KKLG-AKLVLYDERPVPLERHLVFARNESEKWDIIARLVKREFSTESSKGYRGQTIVFTYSRRR 452 (830)
T ss_pred EEEeecCChHHHH---HHhC-CeeEeecCCCCChhHeeeeecCchHHHHHHHHHHHHHHhhhhccCcCCceEEEecchhh
Confidence 999999 888888 4675 5555667787777643 333 22222333333332222 1122234677777777776
Q ss_pred HHHHHHHHHHHHHHhhhhccccccCCccccCCCCCccccchhHHhHHHHHhhcCcccccccccCCCCCcccccCcccccc
Q 038192 250 VEYLCSKLRKASKQLLVNSSKENKGNQVVADSEPNATKDINMKEINEAFEIQGYSTEQQTDRFSSYDEDQFDIDDNELDA 329 (764)
Q Consensus 250 ie~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~ 329 (764)
++.++..|..
T Consensus 453 ~h~lA~~L~~---------------------------------------------------------------------- 462 (830)
T COG1202 453 CHELADALTG---------------------------------------------------------------------- 462 (830)
T ss_pred HHHHHHHhhc----------------------------------------------------------------------
Confidence 6655544421
Q ss_pred ccCccchhhhhhccchhhhhhhcCCCCCCCCcccccccchhhhhHHHHHHhhcCCCCCCCccccCCCCCCCCcCCCCCCC
Q 038192 330 LSDSETESETEILGEDEKLVEQKCPMDGDDPVDVLKENWSLGSLKLAFEVLSGKNASGPSSQMKLSTPAIPEQCTELPPT 409 (764)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilvfl~g~~~i~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 409 (764)
T Consensus 463 -------------------------------------------------------------------------------- 462 (830)
T COG1202 463 -------------------------------------------------------------------------------- 462 (830)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCCCCCccccccCcccCCCCCeEEEecCCCCCHHHHHhhhccCCCCceEEEEecCcccccCCCCCeEEEEeCCc
Q 038192 410 PTPEQCPELSSPDVEKMGDNKRAGVGALCVLPLYAMLPAAAQLRVFEDVKEGERLVVVSTNVAETSLTIPGIKYVVDTGR 489 (764)
Q Consensus 410 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~pLHs~l~~~eQ~~vf~~~~~g~rKVIlsTNIAEtSITIpdV~~VID~G~ 489 (764)
.++..-|+|++|+..+|+.+-..|.++..-+||+|-....|++.|.-.++.+|
T Consensus 463 -------------------------kG~~a~pYHaGL~y~eRk~vE~~F~~q~l~~VVTTAAL~AGVDFPASQVIFEs-- 515 (830)
T COG1202 463 -------------------------KGLKAAPYHAGLPYKERKSVERAFAAQELAAVVTTAALAAGVDFPASQVIFES-- 515 (830)
T ss_pred -------------------------CCcccccccCCCcHHHHHHHHHHHhcCCcceEeehhhhhcCCCCchHHHHHHH--
Confidence 24667899999999999999999999999999999999999999975433321
Q ss_pred ccceeeccCCCccccceeeccHHhHHHhccccCCCC---CCEEEEccCH-HHhcccCCCC----------CCCcccccC-
Q 038192 490 EKVKKYNSANGIESYEIQWISKASAAQRAGRAGRTA---PGHCYRLYSS-AVFNNILPDF----------SCAEISKVP- 554 (764)
Q Consensus 490 ~K~~~yd~~~~~~~l~~~~iSkasa~QR~GRAGR~~---~G~cyrLys~-~~~~~~l~~~----------~~PEI~r~~- 554 (764)
-.+-..|+|-..+.|..|||||-. .|++|-|.-. ..|...|.+. ..||-.-+.
T Consensus 516 ------------LaMG~~WLs~~EF~QM~GRAGRp~yHdrGkVyllvepg~~Y~~~m~~TEdevA~kLL~s~~e~V~vey 583 (830)
T COG1202 516 ------------LAMGIEWLSVREFQQMLGRAGRPDYHDRGKVYLLVEPGKKYHASMEETEDEVAFKLLESEPEPVIVEY 583 (830)
T ss_pred ------------HHcccccCCHHHHHHHhcccCCCCcccCceEEEEecCChhhcccccccHHHHHHHHhcCCCCcceecc
Confidence 123457999999999999999976 3888877643 3444333221 112211111
Q ss_pred -----hhhHHHHHHHcCCC-------CCCCCCCCCCCCHHHHHHHHHHHHHcccccCCC---CccHHHHHHhcCCCChHH
Q 038192 555 -----VDGVVLLMKSMNID-------KVSNFPFPTPPEVTALVEAERCLKALEALDSNG---RLTALGKAMAHYPMSPRH 619 (764)
Q Consensus 555 -----L~~~~L~lk~l~~~-------~~~~f~~~~pP~~~~i~~ai~~L~~lgAld~~~---~LT~LG~~la~LPvdp~l 619 (764)
+++ +|. ..|+. .+.+..+ - ..-....++..|..+|.++.+| ++|+.|+..+.-=+.|.-
T Consensus 584 ~ee~e~e~-vLA--~~~v~~s~~~i~~v~~~~~-g--~~~~~~k~l~~Lee~g~i~~~G~~v~~T~yGrava~~Fl~p~~ 657 (830)
T COG1202 584 DEEDEEEN-VLA--SAGVTNSLSVIERVNSLML-G--AAFDPKKALSKLEEYGMIKKKGNIVRPTPYGRAVAMSFLGPSE 657 (830)
T ss_pred CcHHHHHH-HHH--HhhhcCcHHHHhhcChhhc-c--ccCCHHHHHHHHHhcCCeeccCCEeeeccccceeEEeecCchH
Confidence 122 222 11211 1111110 0 1123567899999999999886 799999999999999999
Q ss_pred HHHHHHHH
Q 038192 620 SRMLLTLI 627 (764)
Q Consensus 620 gkmLl~~~ 627 (764)
+-.|-.++
T Consensus 658 a~~Ir~~v 665 (830)
T COG1202 658 AEFIREGV 665 (830)
T ss_pred HHHHHHhh
Confidence 98887764
No 86
>smart00847 HA2 Helicase associated domain (HA2) Add an annotation. This presumed domain is about 90 amino acid residues in length. It is found is a diverse set of RNA helicases. Its function is unknown, however it seems likely to be involved in nucleic acid binding.
Probab=99.55 E-value=6.9e-15 Score=130.34 Aligned_cols=91 Identities=38% Similarity=0.504 Sum_probs=74.1
Q ss_pred HHHHHHHHcccccCCCCccHHHHHHhcCCCChHHHHHHHHHHhhhhhhhhhhhccchhhhHHhhhcccCCcceeeccccc
Q 038192 586 EAERCLKALEALDSNGRLTALGKAMAHYPMSPRHSRMLLTLIQTMKVKSYARANLVLGYGVAAAAALSVSNPFVLQLEGT 665 (764)
Q Consensus 586 ~ai~~L~~lgAld~~~~LT~LG~~la~LPvdp~lgkmLl~~~~~~~~~~~~~~~~~l~~~~~iaA~ls~~~~F~~p~~~~ 665 (764)
+|++.|+.+||||.+++||++|+.|++||+||++||||+.|..+ . .|..++++|+|++++.++|..+ .
T Consensus 1 ~A~~~L~~LgAld~~~~lT~lG~~m~~lPl~Prla~~Ll~a~~~------~---~c~~~~~~i~a~ls~~~~~~~~-~-- 68 (92)
T smart00847 1 AALELLYELGALDDDGRLTPLGRKMAELPLDPRLAKMLLAAAEL------F---GCLDEILTIAAMLSVGDPFPRP-E-- 68 (92)
T ss_pred CHHHHHHHCCCcCCCCCcCHHHHHHHHCCCChHHHHHHHHHHhh------c---CcHHHHHHHHHHhcCCCCcCCc-h--
Confidence 37899999999999999999999999999999999999988531 0 4788899999999999887543 0
Q ss_pred cCCCCCchhhhhcccCCCCChhhHHHHhhhhhHHHHHHHHHhhcCCC-CCcHHHHH
Q 038192 666 QTNSNDSELEERDNALDSEDPMCRQEKLGKRKLKEVAKLSHAKFSNP-TSDVLTVA 720 (764)
Q Consensus 666 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~f~~~-~sD~lt~l 720 (764)
.++.++..++.|.+. .|||++++
T Consensus 69 --------------------------------~~~~~~~~~~~~~~~~~~D~~~~l 92 (92)
T smart00847 69 --------------------------------KRAEADAARRRFASGRESDHLTLL 92 (92)
T ss_pred --------------------------------HHHHHHHHHHHccCCCCCChhhhC
Confidence 013345667788877 89999864
No 87
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.54 E-value=2.3e-13 Score=159.50 Aligned_cols=82 Identities=20% Similarity=0.336 Sum_probs=68.8
Q ss_pred EecCCCCCHHHHHhhhccCCCC-ceEEEEecCcccccCCCCCeEEEEeCCcccceeeccCCCccccceeeccHHhHHHhc
Q 038192 440 LPLYAMLPAAAQLRVFEDVKEG-ERLVVVSTNVAETSLTIPGIKYVVDTGREKVKKYNSANGIESYEIQWISKASAAQRA 518 (764)
Q Consensus 440 ~pLHs~l~~~eQ~~vf~~~~~g-~rKVIlsTNIAEtSITIpdV~~VID~G~~K~~~yd~~~~~~~l~~~~iSkasa~QR~ 518 (764)
..+||.++..+|.++|+.|..| ..+++|+|+++.+||+||++.+||. +++. +=|+..+.||.
T Consensus 519 ~~I~G~ts~~ER~~il~~Fr~~~~i~vLv~SkVgdeGIDlP~a~vvI~--------~s~~---------~gS~~q~iQRl 581 (732)
T TIGR00603 519 PFIYGPTSQQERMQILQNFQHNPKVNTIFLSKVGDTSIDLPEANVLIQ--------ISSH---------YGSRRQEAQRL 581 (732)
T ss_pred ceEECCCCHHHHHHHHHHHHhCCCccEEEEecccccccCCCCCCEEEE--------eCCC---------CCCHHHHHHHh
Confidence 3479999999999999999865 6799999999999999999999994 4433 23788899999
Q ss_pred cccCCCCC-CEE-------EEccCHHHh
Q 038192 519 GRAGRTAP-GHC-------YRLYSSAVF 538 (764)
Q Consensus 519 GRAGR~~~-G~c-------yrLys~~~~ 538 (764)
||++|.++ |.+ |.|.++..-
T Consensus 582 GRilR~~~~~~~~~~~A~fY~lVs~dT~ 609 (732)
T TIGR00603 582 GRILRAKKGSDAEEYNAFFYSLVSKDTQ 609 (732)
T ss_pred cccccCCCCCccccccceEEEEecCCch
Confidence 99999987 454 888887544
No 88
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.53 E-value=1.1e-14 Score=167.25 Aligned_cols=87 Identities=16% Similarity=0.199 Sum_probs=64.5
Q ss_pred CeEEEecCCCCCHHHH--HhhhccCCCCceEEEEecCcccccCCCCCeEEEE--eCCcccceeeccCCCccccceeeccH
Q 038192 436 ALCVLPLYAMLPAAAQ--LRVFEDVKEGERLVVVSTNVAETSLTIPGIKYVV--DTGREKVKKYNSANGIESYEIQWISK 511 (764)
Q Consensus 436 ~~~i~pLHs~l~~~eQ--~~vf~~~~~g~rKVIlsTNIAEtSITIpdV~~VI--D~G~~K~~~yd~~~~~~~l~~~~iSk 511 (764)
...|..+|++++.... .++++.+.+|...|+|+|++++.|+++|+|+.|+ | +|..-+...+...--.-
T Consensus 284 ~~~v~~~d~d~~~~~~~~~~~l~~f~~g~~~ILVgT~~i~kG~d~~~v~lV~vl~--------aD~~l~~pd~ra~E~~~ 355 (505)
T TIGR00595 284 GARIARIDSDTTSRKGAHEALLNQFANGKADILIGTQMIAKGHHFPNVTLVGVLD--------ADSGLHSPDFRAAERGF 355 (505)
T ss_pred CCcEEEEecccccCccHHHHHHHHHhcCCCCEEEeCcccccCCCCCcccEEEEEc--------CcccccCcccchHHHHH
Confidence 4679999999987655 7899999999999999999999999999999885 5 33222222111111122
Q ss_pred HhHHHhccccCCCCC-CEEE
Q 038192 512 ASAAQRAGRAGRTAP-GHCY 530 (764)
Q Consensus 512 asa~QR~GRAGR~~~-G~cy 530 (764)
+.+.|++|||||... |.++
T Consensus 356 ~ll~q~~GRagR~~~~g~vi 375 (505)
T TIGR00595 356 QLLTQVAGRAGRAEDPGQVI 375 (505)
T ss_pred HHHHHHHhccCCCCCCCEEE
Confidence 456799999999664 9887
No 89
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=99.52 E-value=1.8e-13 Score=155.86 Aligned_cols=84 Identities=29% Similarity=0.376 Sum_probs=75.0
Q ss_pred eEEEecCCCCCHHHHHhhhccCCCCceEEEEecCcccccCCCCCeEEEEeCCcccceeeccCCCccccceeeccHHhHHH
Q 038192 437 LCVLPLYAMLPAAAQLRVFEDVKEGERLVVVSTNVAETSLTIPGIKYVVDTGREKVKKYNSANGIESYEIQWISKASAAQ 516 (764)
Q Consensus 437 ~~i~pLHs~l~~~eQ~~vf~~~~~g~rKVIlsTNIAEtSITIpdV~~VID~G~~K~~~yd~~~~~~~l~~~~iSkasa~Q 516 (764)
+.+.++|++|+.++|..+.+.|-++..+|||||+----||+-|||+|||. ||.+..++ +|-|
T Consensus 255 ~~a~~YHaGl~~~eR~~~q~~f~~~~~~iiVAT~AFGMGIdKpdVRfViH--------~~lP~s~E----------sYyQ 316 (590)
T COG0514 255 ISAGAYHAGLSNEERERVQQAFLNDEIKVMVATNAFGMGIDKPDVRFVIH--------YDLPGSIE----------SYYQ 316 (590)
T ss_pred CceEEecCCCCHHHHHHHHHHHhcCCCcEEEEeccccCccCCCCceEEEE--------ecCCCCHH----------HHHH
Confidence 56889999999999999999999999999999999999999999999995 77665554 5559
Q ss_pred hccccCCCCC-CEEEEccCHHHh
Q 038192 517 RAGRAGRTAP-GHCYRLYSSAVF 538 (764)
Q Consensus 517 R~GRAGR~~~-G~cyrLys~~~~ 538 (764)
=.|||||-+- -.|+-||+.++.
T Consensus 317 E~GRAGRDG~~a~aill~~~~D~ 339 (590)
T COG0514 317 ETGRAGRDGLPAEAILLYSPEDI 339 (590)
T ss_pred HHhhccCCCCcceEEEeeccccH
Confidence 9999999985 999999998764
No 90
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=99.51 E-value=9e-13 Score=137.73 Aligned_cols=148 Identities=19% Similarity=0.198 Sum_probs=96.2
Q ss_pred HHHHHHHHcCCeEEEEecCCCCccccHHHHHHHhccCCCCCCCCCceEEEecccHHHHHHHHHHHHHHhC-CCCCCEeeE
Q 038192 41 QEIMEAVNDNSAVIICGETGCGKTTQVPQFLFEAGFGSNRCSSRSGRIGVTQPRRVAVLATAKRVAFELG-LHLGKEVGF 119 (764)
Q Consensus 41 ~~Il~~l~~~~vviI~GeTGSGKTTqvPq~Lle~~~~~~~~~~~~~~Ii~tQPRRiaAisvA~RVa~E~g-~~lG~~VGY 119 (764)
..+++.+.+...++|.|-||+|||-.+-|-+-. ...++ ++|++.-||=-.+..++.|+.+... +.+- .=|
T Consensus 107 ~~l~q~i~~k~~~lv~AV~GaGKTEMif~~i~~-al~~G------~~vciASPRvDVclEl~~Rlk~aF~~~~I~--~Ly 177 (441)
T COG4098 107 NQLVQYIKQKEDTLVWAVTGAGKTEMIFQGIEQ-ALNQG------GRVCIASPRVDVCLELYPRLKQAFSNCDID--LLY 177 (441)
T ss_pred HHHHHHHHhcCcEEEEEecCCCchhhhHHHHHH-HHhcC------CeEEEecCcccchHHHHHHHHHhhccCCee--eEe
Confidence 457888999999999999999999877766533 23322 5899999999999999999998775 4332 112
Q ss_pred EeccCcccCCCceEEEEchHHHHHHHHH----HHHHHHH-------HHhhccccCCccCCCCceEEEeecccchhhhccc
Q 038192 120 QVRHDKKIGDSCSIKFMTDGILLRELKA----LYEKQQQ-------LLRSGQCIEPKDRVFPLKLILMSATLRVEDFISG 188 (764)
Q Consensus 120 ~ir~e~~~s~~t~I~f~T~GiLLr~l~~----i~de~~~-------~l~~~~~~~~~~~~~~lKlILMSATl~~~~f~~~ 188 (764)
+++...-++.+++||+--|+|.-+. ++||.|. ++...... .+...--+|.||||-.-+.-.+
T Consensus 178 ---g~S~~~fr~plvVaTtHQLlrFk~aFD~liIDEVDAFP~~~d~~L~~Av~~---ark~~g~~IylTATp~k~l~r~- 250 (441)
T COG4098 178 ---GDSDSYFRAPLVVATTHQLLRFKQAFDLLIIDEVDAFPFSDDQSLQYAVKK---ARKKEGATIYLTATPTKKLERK- 250 (441)
T ss_pred ---cCCchhccccEEEEehHHHHHHHhhccEEEEeccccccccCCHHHHHHHHH---hhcccCceEEEecCChHHHHHH-
Confidence 2333333478999999999997654 3466542 22221111 1123345789999985443331
Q ss_pred cCCCCCCCeeeeCCccc
Q 038192 189 GRLFRNPPIIEVPTRQF 205 (764)
Q Consensus 189 ~~~f~~~~vi~i~gr~~ 205 (764)
-.-++-..+.+|.|.|
T Consensus 251 -~~~g~~~~~klp~RfH 266 (441)
T COG4098 251 -ILKGNLRILKLPARFH 266 (441)
T ss_pred -hhhCCeeEeecchhhc
Confidence 1123344567776643
No 91
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=99.43 E-value=7.6e-12 Score=148.06 Aligned_cols=109 Identities=13% Similarity=0.081 Sum_probs=80.6
Q ss_pred hhhcCCCchhhHHHHHHHHHcCCeEEEEecCCCCccccHHHHHHHhccCCCCCCCCCceEEEecccHHHHHHHHHHHHHH
Q 038192 29 NNRKDLPIVMMEQEIMEAVNDNSAVIICGETGCGKTTQVPQFLFEAGFGSNRCSSRSGRIGVTQPRRVAVLATAKRVAFE 108 (764)
Q Consensus 29 ~~R~~LPi~~~~~~Il~~l~~~~vviI~GeTGSGKTTqvPq~Lle~~~~~~~~~~~~~~Ii~tQPRRiaAisvA~RVa~E 108 (764)
..|+.|-...+--+++-.+.-++--|....||+|||......++..++.. ..+.|.-|+|.+|.+.++.. ..
T Consensus 74 a~~R~lg~~~ydvQliGg~~Lh~G~Iaem~TGeGKTL~a~Lpa~~~al~G-------~~V~VvTpn~yLA~qd~e~m-~~ 145 (896)
T PRK13104 74 VSLRTLGLRHFDVQLIGGMVLHEGNIAEMRTGEGKTLVATLPAYLNAISG-------RGVHIVTVNDYLAKRDSQWM-KP 145 (896)
T ss_pred HHHHHcCCCcchHHHhhhhhhccCccccccCCCCchHHHHHHHHHHHhcC-------CCEEEEcCCHHHHHHHHHHH-HH
Confidence 34567777777778888877777778999999999988766666555432 24778899999999988844 45
Q ss_pred hCCCCCCEeeEEeccCccc----CCCceEEEEchHHH-HHHH
Q 038192 109 LGLHLGKEVGFQVRHDKKI----GDSCSIKFMTDGIL-LREL 145 (764)
Q Consensus 109 ~g~~lG~~VGY~ir~e~~~----s~~t~I~f~T~GiL-Lr~l 145 (764)
+...+|-+||.-+...+.. .-.++|+|+|+|.| ++.|
T Consensus 146 l~~~lGLtv~~i~gg~~~~~r~~~y~~dIvygT~grlgfDyL 187 (896)
T PRK13104 146 IYEFLGLTVGVIYPDMSHKEKQEAYKADIVYGTNNEYGFDYL 187 (896)
T ss_pred HhcccCceEEEEeCCCCHHHHHHHhCCCEEEECChhhhHHHH
Confidence 5667898999876653321 12579999999999 6665
No 92
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=99.35 E-value=5.8e-11 Score=140.32 Aligned_cols=418 Identities=19% Similarity=0.207 Sum_probs=232.3
Q ss_pred HHHHHH-HHcCCeEEEEecCCCCccccHHHHHHHhccCCCCC----CCCCceEEEecccHHHHHHHHHHHHHHhCCCCCC
Q 038192 41 QEIMEA-VNDNSAVIICGETGCGKTTQVPQFLFEAGFGSNRC----SSRSGRIGVTQPRRVAVLATAKRVAFELGLHLGK 115 (764)
Q Consensus 41 ~~Il~~-l~~~~vviI~GeTGSGKTTqvPq~Lle~~~~~~~~----~~~~~~Ii~tQPRRiaAisvA~RVa~E~g~~lG~ 115 (764)
..+..+ +.....+++||+||+|||----.-+|+..-.+.+. .-.+.+|+-.-|-.-++..+-.-++ .+-..+|-
T Consensus 315 S~v~daAl~~~EnmLlCAPTGaGKTNVAvLtiLqel~~h~r~dgs~nl~~fKIVYIAPmKaLvqE~VgsfS-kRla~~GI 393 (1674)
T KOG0951|consen 315 SKVYDAALRGDENMLLCAPTGAGKTNVAVLTILQELGNHLREDGSVNLAPFKIVYIAPMKALVQEMVGSFS-KRLAPLGI 393 (1674)
T ss_pred HHHHHHHhcCcCcEEEeccCCCCchHHHHHHHHHHHhcccccccceecccceEEEEeeHHHHHHHHHHHHH-hhccccCc
Confidence 334433 34456799999999999965444444432111110 0124589999999877655433333 23346777
Q ss_pred EeeEEeccCccc---CCCceEEEEchH---HHHHHH----------HHHHHHHHHH-------Hhh---ccccCCccCCC
Q 038192 116 EVGFQVRHDKKI---GDSCSIKFMTDG---ILLREL----------KALYEKQQQL-------LRS---GQCIEPKDRVF 169 (764)
Q Consensus 116 ~VGY~ir~e~~~---s~~t~I~f~T~G---iLLr~l----------~~i~de~~~~-------l~~---~~~~~~~~~~~ 169 (764)
+|+-..+-.... -..|++++|||. ++-|.- ..++||.|.+ +.. ...........
T Consensus 394 ~V~ElTgD~~l~~~qieeTqVIV~TPEK~DiITRk~gdraY~qlvrLlIIDEIHLLhDdRGpvLESIVaRt~r~ses~~e 473 (1674)
T KOG0951|consen 394 TVLELTGDSQLGKEQIEETQVIVTTPEKWDIITRKSGDRAYEQLVRLLIIDEIHLLHDDRGPVLESIVARTFRRSESTEE 473 (1674)
T ss_pred EEEEecccccchhhhhhcceeEEeccchhhhhhcccCchhHHHHHHHHhhhhhhhcccccchHHHHHHHHHHHHhhhccc
Confidence 787655544322 257999999995 444431 1244555422 111 11111122335
Q ss_pred CceEEEeeccc----chhhhccccC----CCCCCCeeeeCCcccceeEEecCCCchhhHH------HHHHHHHHHHhhcC
Q 038192 170 PLKLILMSATL----RVEDFISGGR----LFRNPPIIEVPTRQFPVTVHFSKRTEIVDYI------GQAYKKVMSIHKRL 235 (764)
Q Consensus 170 ~lKlILMSATl----~~~~f~~~~~----~f~~~~vi~i~gr~~pV~~~y~~~~~~~d~l------~~~~~~v~~i~~~~ 235 (764)
..++|-.|||+ |+..|..-.. ||+. .=|.-|.+..|..-++.++.- +..+.++++-.
T Consensus 474 ~~RlVGLSATLPNy~DV~~Fl~v~~~glf~fd~------syRpvPL~qq~Igi~ek~~~~~~qamNe~~yeKVm~~a--- 544 (1674)
T KOG0951|consen 474 GSRLVGLSATLPNYEDVASFLRVDPEGLFYFDS------SYRPVPLKQQYIGITEKKPLKRFQAMNEACYEKVLEHA--- 544 (1674)
T ss_pred CceeeeecccCCchhhhHHHhccCcccccccCc------ccCcCCccceEeccccCCchHHHHHHHHHHHHHHHHhC---
Confidence 78999999999 5566552111 2221 123346666665443322211 24566666543
Q ss_pred CCCCeEEecCCHHHHHHHHHHHHHHHHHhhhhccccccCCccccCCCCCccccchhHHhHHHHH-hhcCcccccccccCC
Q 038192 236 PQGGILVFVTGQREVEYLCSKLRKASKQLLVNSSKENKGNQVVADSEPNATKDINMKEINEAFE-IQGYSTEQQTDRFSS 314 (764)
Q Consensus 236 ~~g~ilvF~~g~~~ie~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~q~~~~~~ 314 (764)
..+.+|||+.+++|.-..++.++...-+. +....+- ....+.
T Consensus 545 gk~qVLVFVHsRkET~ktA~aIRd~~le~----------------------------dtls~fmre~s~s~--------- 587 (1674)
T KOG0951|consen 545 GKNQVLVFVHSRKETAKTARAIRDKALEE----------------------------DTLSRFMREDSASR--------- 587 (1674)
T ss_pred CCCcEEEEEEechHHHHHHHHHHHHHhhh----------------------------hHHHHHHhcccchh---------
Confidence 34889999999999988888888532111 0000000 000000
Q ss_pred CCCcccccCccccccccCccchhhhhhccchhhhhhhcCCCCCCCCcccccccchhhhhHHHHHHhhcCCCCCCCccccC
Q 038192 315 YDEDQFDIDDNELDALSDSETESETEILGEDEKLVEQKCPMDGDDPVDVLKENWSLGSLKLAFEVLSGKNASGPSSQMKL 394 (764)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilvfl~g~~~i~~l~~~~~~l~~~~~~~~~~~~~~ 394 (764)
+++ ...+|.+.
T Consensus 588 -------------------------eil-----------------------------------rtea~~~k--------- 598 (1674)
T KOG0951|consen 588 -------------------------EIL-----------------------------------RTEAGQAK--------- 598 (1674)
T ss_pred -------------------------hhh-----------------------------------hhhhhccc---------
Confidence 000 00000000
Q ss_pred CCCCCCCcCCCCCCCCCCCCCCCCCCCccccccCcccCCCCCeEEEecCCCCCHHHHHhhhccCCCCceEEEEecCcccc
Q 038192 395 STPAIPEQCTELPPTPTPEQCPELSSPDVEKMGDNKRAGVGALCVLPLYAMLPAAAQLRVFEDVKEGERLVVVSTNVAET 474 (764)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~pLHs~l~~~eQ~~vf~~~~~g~rKVIlsTNIAEt 474 (764)
++.++ +.-.+.+..-|++|...+|..+-+-+.+|.++|++||--.+.
T Consensus 599 -----------------n~dLk----------------dLLpygfaIHhAGl~R~dR~~~EdLf~~g~iqvlvstatlaw 645 (1674)
T KOG0951|consen 599 -----------------NPDLK----------------DLLPYGFAIHHAGLNRKDRELVEDLFADGHIQVLVSTATLAW 645 (1674)
T ss_pred -----------------ChhHH----------------HHhhccceeeccCCCcchHHHHHHHHhcCceeEEEeehhhhh
Confidence 00000 011345666799999999999999999999999999999999
Q ss_pred cCCCCCeEEEEeCCcccceeeccCCCccccceeeccHHhHHHhccccCCCC-----CCEEEEccCHHHhc-ccCCCCCCC
Q 038192 475 SLTIPGIKYVVDTGREKVKKYNSANGIESYEIQWISKASAAQRAGRAGRTA-----PGHCYRLYSSAVFN-NILPDFSCA 548 (764)
Q Consensus 475 SITIpdV~~VID~G~~K~~~yd~~~~~~~l~~~~iSkasa~QR~GRAGR~~-----~G~cyrLys~~~~~-~~l~~~~~P 548 (764)
|+..|.=+++|- | ...|||..|.- ..+|.-.-.||.|||||.+ .|+-..=+++-.|. +.|.+.-+-
T Consensus 646 gvnlpahtViik-g---tqvy~pekg~w----~elsp~dv~qmlgragrp~~D~~gegiiit~~se~qyyls~mn~qLpi 717 (1674)
T KOG0951|consen 646 GVNLPAHTVIIK-G---TQVYDPEKGRW----TELSPLDVMQMLGRAGRPQYDTCGEGIIITDHSELQYYLSLMNQQLPI 717 (1674)
T ss_pred hcCCCcceEEec-C---ccccCcccCcc----ccCCHHHHHHHHhhcCCCccCcCCceeeccCchHhhhhHHhhhhcCCC
Confidence 999999877772 2 34799998832 2378889999999999975 35555555554442 222222222
Q ss_pred cccccC-hhhHHHHH-HHcCCCCCCC--------CCC---CC-------CCCH----------HHHHHHHHHHHHccccc
Q 038192 549 EISKVP-VDGVVLLM-KSMNIDKVSN--------FPF---PT-------PPEV----------TALVEAERCLKALEALD 598 (764)
Q Consensus 549 EI~r~~-L~~~~L~l-k~l~~~~~~~--------f~~---~~-------pP~~----------~~i~~ai~~L~~lgAld 598 (764)
|=++++ |.+ ||.. +.+|+..+.+ |.| +. +|.. +-+..|.-.|...|.+-
T Consensus 718 esq~~~rl~d-~lnaeiv~Gv~~~~d~~~wl~yTylyvRm~~~p~ly~~~~~~~d~~le~~r~~lvhsa~~ll~~~~li~ 796 (1674)
T KOG0951|consen 718 ESQFVSRLAD-CLNAEIVLGVRSARDAVDWLGYTYLYVRMVRNPTLYGVSPEASDRLLEQRRADLVHSAATLLDKAGLIK 796 (1674)
T ss_pred hHHHHHHhhh-hhhhhhhcchhhHHHHHhhhcceeeEEeeccCchhccCCcccchHHHHHHHhhhHHHHHhhHhhcCccc
Confidence 222221 111 1211 2333322111 111 11 1211 34566788888888774
Q ss_pred CC-----CCccHHHHHHhcCCCC
Q 038192 599 SN-----GRLTALGKAMAHYPMS 616 (764)
Q Consensus 599 ~~-----~~LT~LG~~la~LPvd 616 (764)
-+ -.-|.+|+.-+.+-+.
T Consensus 797 yd~~s~~~~~telg~ias~yyi~ 819 (1674)
T KOG0951|consen 797 YDRKSGAIQATELGRIASSYYIT 819 (1674)
T ss_pred cccccCcccchhhccccceeeee
Confidence 22 3688999999988774
No 93
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=99.35 E-value=1.1e-11 Score=148.29 Aligned_cols=84 Identities=24% Similarity=0.308 Sum_probs=72.1
Q ss_pred CCeEEEecCCCCCHHHHHhhhccCCCCceEEEEecCcccccCCCCCeEEEEeCCcccceeecc-CCCccccceeeccHHh
Q 038192 435 GALCVLPLYAMLPAAAQLRVFEDVKEGERLVVVSTNVAETSLTIPGIKYVVDTGREKVKKYNS-ANGIESYEIQWISKAS 513 (764)
Q Consensus 435 ~~~~i~pLHs~l~~~eQ~~vf~~~~~g~rKVIlsTNIAEtSITIpdV~~VID~G~~K~~~yd~-~~~~~~l~~~~iSkas 513 (764)
+..+|...||.|+..+..++|..|-+|.-.|+|||-|.||||+||++.-.| ..+. .-|++.|-
T Consensus 828 PEarI~vaHGQM~e~eLE~vM~~F~~g~~dVLv~TTIIEtGIDIPnANTiI--------Ie~AD~fGLsQLy-------- 891 (1139)
T COG1197 828 PEARIAVAHGQMRERELEEVMLDFYNGEYDVLVCTTIIETGIDIPNANTII--------IERADKFGLAQLY-------- 891 (1139)
T ss_pred CceEEEEeecCCCHHHHHHHHHHHHcCCCCEEEEeeeeecCcCCCCCceEE--------EeccccccHHHHH--------
Confidence 457799999999999999999999999999999999999999999998777 1222 23555555
Q ss_pred HHHhccccCCCCC-CEEEEccCHH
Q 038192 514 AAQRAGRAGRTAP-GHCYRLYSSA 536 (764)
Q Consensus 514 a~QR~GRAGR~~~-G~cyrLys~~ 536 (764)
|=+||.||... |+||-||+..
T Consensus 892 --QLRGRVGRS~~~AYAYfl~p~~ 913 (1139)
T COG1197 892 --QLRGRVGRSNKQAYAYFLYPPQ 913 (1139)
T ss_pred --HhccccCCccceEEEEEeecCc
Confidence 99999999987 9999999963
No 94
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]
Probab=99.32 E-value=1.6e-11 Score=146.84 Aligned_cols=171 Identities=18% Similarity=0.258 Sum_probs=116.1
Q ss_pred cCCCchhhHHHHHHHHHcCCeEEEEecCCCCccccHHHHHHHhccCCCCCCCCCceEEEecccHHHHHHHHHHHHHHhCC
Q 038192 32 KDLPIVMMEQEIMEAVNDNSAVIICGETGCGKTTQVPQFLFEAGFGSNRCSSRSGRIGVTQPRRVAVLATAKRVAFELGL 111 (764)
Q Consensus 32 ~~LPi~~~~~~Il~~l~~~~vviI~GeTGSGKTTqvPq~Lle~~~~~~~~~~~~~~Ii~tQPRRiaAisvA~RVa~E~g~ 111 (764)
.......+|++-+.+|+.++-|+|+++||||||.. --|=.......+ .+++-|-|-+...-|....+-.+.|.
T Consensus 116 ~~F~LD~fQ~~a~~~Ler~esVlV~ApTssGKTvV-aeyAi~~al~~~------qrviYTsPIKALsNQKyrdl~~~fgd 188 (1041)
T COG4581 116 YPFELDPFQQEAIAILERGESVLVCAPTSSGKTVV-AEYAIALALRDG------QRVIYTSPIKALSNQKYRDLLAKFGD 188 (1041)
T ss_pred CCCCcCHHHHHHHHHHhCCCcEEEEccCCCCcchH-HHHHHHHHHHcC------CceEeccchhhhhhhHHHHHHHHhhh
Confidence 45667788999999999999999999999999932 111111111111 46889999998888888888888875
Q ss_pred CCCCEeeEEeccCcccCCCceEEEEchHHHHHHHH-----------HHHHHHHHHHh--hccc-cC-CccCCCCceEEEe
Q 038192 112 HLGKEVGFQVRHDKKIGDSCSIKFMTDGILLRELK-----------ALYEKQQQLLR--SGQC-IE-PKDRVFPLKLILM 176 (764)
Q Consensus 112 ~lG~~VGY~ir~e~~~s~~t~I~f~T~GiLLr~l~-----------~i~de~~~~l~--~~~~-~~-~~~~~~~lKlILM 176 (764)
. -..||- +.+|-.+++.+.+++||+.||-.++- .|+||.|-+=+ .|.. .. +.-...++++|.+
T Consensus 189 v-~~~vGL-~TGDv~IN~~A~clvMTTEILRnMlyrg~~~~~~i~~ViFDEvHyi~D~eRG~VWEE~Ii~lP~~v~~v~L 266 (1041)
T COG4581 189 V-ADMVGL-MTGDVSINPDAPCLVMTTEILRNMLYRGSESLRDIEWVVFDEVHYIGDRERGVVWEEVIILLPDHVRFVFL 266 (1041)
T ss_pred h-hhhccc-eecceeeCCCCceEEeeHHHHHHHhccCcccccccceEEEEeeeeccccccchhHHHHHHhcCCCCcEEEE
Confidence 4 222343 23344567889999999988887772 15677663211 1110 00 0011246899999
Q ss_pred eccc-chhhhccccCCCC-----CCCeeeeCCcccceeEEecCC
Q 038192 177 SATL-RVEDFISGGRLFR-----NPPIIEVPTRQFPVTVHFSKR 214 (764)
Q Consensus 177 SATl-~~~~f~~~~~~f~-----~~~vi~i~gr~~pV~~~y~~~ 214 (764)
|||+ |++.|. .+++ ++.+|..+-|.-|.+.||...
T Consensus 267 SATv~N~~EF~---~Wi~~~~~~~~~vv~t~~RpvPL~~~~~~~ 307 (1041)
T COG4581 267 SATVPNAEEFA---EWIQRVHSQPIHVVSTEHRPVPLEHFVYVG 307 (1041)
T ss_pred eCCCCCHHHHH---HHHHhccCCCeEEEeecCCCCCeEEEEecC
Confidence 9999 999998 4665 367788888888888766543
No 95
>KOG0948 consensus Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily [RNA processing and modification]
Probab=99.27 E-value=3.3e-11 Score=136.30 Aligned_cols=161 Identities=16% Similarity=0.168 Sum_probs=105.2
Q ss_pred hhhHHHHHHHHHcCCeEEEEecCCCCccccHHHHHHHhccCCCCCCCCCceEEEecccHHHHHHHHHHHHHHhCCCCCCE
Q 038192 37 VMMEQEIMEAVNDNSAVIICGETGCGKTTQVPQFLFEAGFGSNRCSSRSGRIGVTQPRRVAVLATAKRVAFELGLHLGKE 116 (764)
Q Consensus 37 ~~~~~~Il~~l~~~~vviI~GeTGSGKTTqvPq~Lle~~~~~~~~~~~~~~Ii~tQPRRiaAisvA~RVa~E~g~~lG~~ 116 (764)
-.++..-+..|.+++-|+|+|.|.+|||..---.|... +..+ .+++-|-|-+.+.-|=.+.+-.|++.
T Consensus 131 DpFQ~~aI~Cidr~eSVLVSAHTSAGKTVVAeYAIA~s-Lr~k------QRVIYTSPIKALSNQKYREl~~EF~D----- 198 (1041)
T KOG0948|consen 131 DPFQSTAIKCIDRGESVLVSAHTSAGKTVVAEYAIAMS-LREK------QRVIYTSPIKALSNQKYRELLEEFKD----- 198 (1041)
T ss_pred CchHhhhhhhhcCCceEEEEeecCCCcchHHHHHHHHH-HHhc------CeEEeeChhhhhcchhHHHHHHHhcc-----
Confidence 45678889999999999999999999995321112111 1111 48999999887666666666677753
Q ss_pred eeEEeccCcccCCCceEEEEchHHHHHHHH-------H----HHHHHHHHHhhccccC----CccCCCCceEEEeeccc-
Q 038192 117 VGFQVRHDKKIGDSCSIKFMTDGILLRELK-------A----LYEKQQQLLRSGQCIE----PKDRVFPLKLILMSATL- 180 (764)
Q Consensus 117 VGY~ir~e~~~s~~t~I~f~T~GiLLr~l~-------~----i~de~~~~l~~~~~~~----~~~~~~~lKlILMSATl- 180 (764)
||-. .+|-..+++...++|||.||-.+|- + ||||.|-|=+...-.. +.-..++.|.|..|||+
T Consensus 199 VGLM-TGDVTInP~ASCLVMTTEILRsMLYRGSEvmrEVaWVIFDEIHYMRDkERGVVWEETIIllP~~vr~VFLSATiP 277 (1041)
T KOG0948|consen 199 VGLM-TGDVTINPDASCLVMTTEILRSMLYRGSEVMREVAWVIFDEIHYMRDKERGVVWEETIILLPDNVRFVFLSATIP 277 (1041)
T ss_pred ccee-ecceeeCCCCceeeeHHHHHHHHHhccchHhheeeeEEeeeehhccccccceeeeeeEEeccccceEEEEeccCC
Confidence 4432 2344557888999999999988872 1 6788886544321110 11123578999999999
Q ss_pred chhhhccccCCCCC--CCeeeeCCcccceeEE
Q 038192 181 RVEDFISGGRLFRN--PPIIEVPTRQFPVTVH 210 (764)
Q Consensus 181 ~~~~f~~~~~~f~~--~~vi~i~gr~~pV~~~ 210 (764)
++-.|++--..... |.|+.-.=|.-|.+-|
T Consensus 278 NA~qFAeWI~~ihkQPcHVVYTdyRPTPLQHy 309 (1041)
T KOG0948|consen 278 NARQFAEWICHIHKQPCHVVYTDYRPTPLQHY 309 (1041)
T ss_pred CHHHHHHHHHHHhcCCceEEeecCCCCcceee
Confidence 88888741111222 6666666666666543
No 96
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=99.24 E-value=1.4e-10 Score=137.25 Aligned_cols=108 Identities=16% Similarity=0.131 Sum_probs=73.7
Q ss_pred hhcCCCchhhHHHHHHHHHcCCeEEEEecCCCCccccHHHHHHHhccCCCCCCCCCceEEEecccHHHHHHHHHHHHHHh
Q 038192 30 NRKDLPIVMMEQEIMEAVNDNSAVIICGETGCGKTTQVPQFLFEAGFGSNRCSSRSGRIGVTQPRRVAVLATAKRVAFEL 109 (764)
Q Consensus 30 ~R~~LPi~~~~~~Il~~l~~~~vviI~GeTGSGKTTqvPq~Lle~~~~~~~~~~~~~~Ii~tQPRRiaAisvA~RVa~E~ 109 (764)
.++.|-...+--+++-.+.=++--|....||+|||......++=.+... ..+-|.-|++.+|.+.++.+. ..
T Consensus 74 ~~R~lg~~~~dvQlig~l~L~~G~Iaem~TGeGKTLva~lpa~l~aL~G-------~~V~IvTpn~yLA~rd~e~~~-~l 145 (830)
T PRK12904 74 SKRVLGMRHFDVQLIGGMVLHEGKIAEMKTGEGKTLVATLPAYLNALTG-------KGVHVVTVNDYLAKRDAEWMG-PL 145 (830)
T ss_pred HHHHhCCCCCccHHHhhHHhcCCchhhhhcCCCcHHHHHHHHHHHHHcC-------CCEEEEecCHHHHHHHHHHHH-HH
Confidence 3456666666667887776666668899999999976444443222221 135577899999988888554 34
Q ss_pred CCCCCCEeeEEeccCccc----CCCceEEEEchHHH-HHHH
Q 038192 110 GLHLGKEVGFQVRHDKKI----GDSCSIKFMTDGIL-LREL 145 (764)
Q Consensus 110 g~~lG~~VGY~ir~e~~~----s~~t~I~f~T~GiL-Lr~l 145 (764)
...+|-+||.-+...+.. .-.++|+|+|+|.| ++.|
T Consensus 146 ~~~LGlsv~~i~~~~~~~er~~~y~~dI~ygT~~elgfDyL 186 (830)
T PRK12904 146 YEFLGLSVGVILSGMSPEERREAYAADITYGTNNEFGFDYL 186 (830)
T ss_pred HhhcCCeEEEEcCCCCHHHHHHhcCCCeEEECCcchhhhhh
Confidence 567788898776543321 12478999999999 7766
No 97
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=99.23 E-value=4.8e-10 Score=131.33 Aligned_cols=327 Identities=20% Similarity=0.232 Sum_probs=189.0
Q ss_pred HHHHHHcCCeEEEEecCCCCccccHHHHHHHhcc---CCCCCCCCCceEEEecccHHHHHHHHHHHHHHhCCCCCCEeeE
Q 038192 43 IMEAVNDNSAVIICGETGCGKTTQVPQFLFEAGF---GSNRCSSRSGRIGVTQPRRVAVLATAKRVAFELGLHLGKEVGF 119 (764)
Q Consensus 43 Il~~l~~~~vviI~GeTGSGKTTqvPq~Lle~~~---~~~~~~~~~~~Ii~tQPRRiaAisvA~RVa~E~g~~lG~~VGY 119 (764)
+..+-+.|-..+|||+||||||-..-.-||..-. ++.......-+|+-..|.+.+|..+++...+.++ ++|-.|+-
T Consensus 119 Fp~aY~SneNMLIcAPTGsGKT~la~L~ILr~ik~~~~~~~i~k~~fKiVYIaPmKALa~Em~~~~~kkl~-~~gi~v~E 197 (1230)
T KOG0952|consen 119 FPVAYKSNENMLICAPTGSGKTVLAELCILRTIKEHEEQGDIAKDDFKIVYIAPMKALAAEMVDKFSKKLA-PLGISVRE 197 (1230)
T ss_pred hhhhhcCCCCEEEECCCCCCchHHHHHHHHHHHHhhccccccccCCceEEEEechHHHHHHHHHHHhhhcc-cccceEEE
Confidence 3345566788999999999999765555554221 1111112236899999999988887776666554 34445542
Q ss_pred EeccCcccC----CCceEEEEchH---HHHHH----------H-HHHHHHHHHH----------HhhccccCCccCCCCc
Q 038192 120 QVRHDKKIG----DSCSIKFMTDG---ILLRE----------L-KALYEKQQQL----------LRSGQCIEPKDRVFPL 171 (764)
Q Consensus 120 ~ir~e~~~s----~~t~I~f~T~G---iLLr~----------l-~~i~de~~~~----------l~~~~~~~~~~~~~~l 171 (764)
= -+|...+ ..|+|++.||. ++-|. + ..++||.|.+ |....+..+......+
T Consensus 198 L-TGD~ql~~tei~~tqiiVTTPEKwDvvTRk~~~d~~l~~~V~LviIDEVHlLhd~RGpvlEtiVaRtlr~vessqs~I 276 (1230)
T KOG0952|consen 198 L-TGDTQLTKTEIADTQIIVTTPEKWDVVTRKSVGDSALFSLVRLVIIDEVHLLHDDRGPVLETIVARTLRLVESSQSMI 276 (1230)
T ss_pred e-cCcchhhHHHHHhcCEEEecccceeeeeeeeccchhhhhheeeEEeeeehhhcCcccchHHHHHHHHHHHHHhhhhhe
Confidence 1 1232222 47999999994 12111 1 1134555421 2222222222334578
Q ss_pred eEEEeeccc-chhhhccccCCCCC---CCeeeeCCcccce--eEEecCCC------chhhHHHHHHHHHHHHhhcCCCCC
Q 038192 172 KLILMSATL-RVEDFISGGRLFRN---PPIIEVPTRQFPV--TVHFSKRT------EIVDYIGQAYKKVMSIHKRLPQGG 239 (764)
Q Consensus 172 KlILMSATl-~~~~f~~~~~~f~~---~~vi~i~gr~~pV--~~~y~~~~------~~~d~l~~~~~~v~~i~~~~~~g~ 239 (764)
|+|..|||+ |.++.+ .|.+- ..++...++.-|| +..|.... ...+.-..++.++.+.+. ....
T Consensus 277 RivgLSATlPN~eDvA---~fL~vn~~~glfsFd~~yRPvpL~~~~iG~k~~~~~~~~~~~d~~~~~kv~e~~~--~g~q 351 (1230)
T KOG0952|consen 277 RIVGLSATLPNYEDVA---RFLRVNPYAGLFSFDQRYRPVPLTQGFIGIKGKKNRQQKKNIDEVCYDKVVEFLQ--EGHQ 351 (1230)
T ss_pred EEEEeeccCCCHHHHH---HHhcCCCccceeeecccccccceeeeEEeeecccchhhhhhHHHHHHHHHHHHHH--cCCe
Confidence 999999999 555554 23332 3344445544343 33332111 111122223445555543 3456
Q ss_pred eEEecCCHHHHHHHHHHHHHHHHHhhhhccccccCCccccCCCCCccccchhHHhHHHHHhhcCcccccccccCCCCCcc
Q 038192 240 ILVFVTGQREVEYLCSKLRKASKQLLVNSSKENKGNQVVADSEPNATKDINMKEINEAFEIQGYSTEQQTDRFSSYDEDQ 319 (764)
Q Consensus 240 ilvF~~g~~~ie~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~ 319 (764)
++||++++.+.-..++.|.+.....
T Consensus 352 VlvFvhsR~~Ti~tA~~l~~~a~~~------------------------------------------------------- 376 (1230)
T KOG0952|consen 352 VLVFVHSRNETIRTAKKLRERAETN------------------------------------------------------- 376 (1230)
T ss_pred EEEEEecChHHHHHHHHHHHHHHhc-------------------------------------------------------
Confidence 9999999887777777776521100
Q ss_pred cccCccccccccCccchhhhhhccchhhhhhhcCCCCCCCCcccccccchhhhhHHHHHHhhcCCCCCCCccccCCCCCC
Q 038192 320 FDIDDNELDALSDSETESETEILGEDEKLVEQKCPMDGDDPVDVLKENWSLGSLKLAFEVLSGKNASGPSSQMKLSTPAI 399 (764)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilvfl~g~~~i~~l~~~~~~l~~~~~~~~~~~~~~~~~~~ 399 (764)
|..--|+|+-.+ ..|...+..
T Consensus 377 --------------------------------------g~~~~f~~~~~~-k~l~elf~~-------------------- 397 (1230)
T KOG0952|consen 377 --------------------------------------GEKDLFLPSPRN-KQLKELFQQ-------------------- 397 (1230)
T ss_pred --------------------------------------CcccccCCChhh-HHHHHHHHh--------------------
Confidence 000011222100 011111111
Q ss_pred CCcCCCCCCCCCCCCCCCCCCCccccccCcccCCCCCeEEEecCCCCCHHHHHhhhccCCCCceEEEEecCcccccCCCC
Q 038192 400 PEQCTELPPTPTPEQCPELSSPDVEKMGDNKRAGVGALCVLPLYAMLPAAAQLRVFEDVKEGERLVVVSTNVAETSLTIP 479 (764)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~pLHs~l~~~eQ~~vf~~~~~g~rKVIlsTNIAEtSITIp 479 (764)
-+-.-|++|..++|+.+-+-|..|..+|++||.-..-|+.+|
T Consensus 398 --------------------------------------g~~iHhAGm~r~DR~l~E~~F~~G~i~vL~cTaTLAwGVNLP 439 (1230)
T KOG0952|consen 398 --------------------------------------GMGIHHAGMLRSDRQLVEKEFKEGHIKVLCCTATLAWGVNLP 439 (1230)
T ss_pred --------------------------------------hhhhcccccchhhHHHHHHHHhcCCceEEEecceeeeccCCc
Confidence 123348999999999999999999999999999999999999
Q ss_pred CeEEEEeCCcccceeeccCCCccccceeeccHHhHHHhccccCCCC---CCEEEEccCHH
Q 038192 480 GIKYVVDTGREKVKKYNSANGIESYEIQWISKASAAQRAGRAGRTA---PGHCYRLYSSA 536 (764)
Q Consensus 480 dV~~VID~G~~K~~~yd~~~~~~~l~~~~iSkasa~QR~GRAGR~~---~G~cyrLys~~ 536 (764)
+=..+|- | ...||+..|.- .=.+-....|--|||||-+ .|..+-+-++.
T Consensus 440 A~aViIK-G---T~~ydsskg~f----~dlgilDVlQifGRAGRPqFd~~G~giIiTt~d 491 (1230)
T KOG0952|consen 440 AYAVIIK-G---TQVYDSSKGSF----VDLGILDVLQIFGRAGRPQFDSSGEGIIITTRD 491 (1230)
T ss_pred ceEEEec-C---CcccccccCce----eeehHHHHHHHHhccCCCCCCCCceEEEEeccc
Confidence 9766662 2 45788777522 1234456779999999976 37777666653
No 98
>KOG0329 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.22 E-value=3.9e-11 Score=120.77 Aligned_cols=145 Identities=18% Similarity=0.173 Sum_probs=95.5
Q ss_pred CCCchhhHHHHHHHHHcCCeEEEEecCCCCccccHHHHHHHhccCCCCCCCCCceEEEecccHHHHHHHHH---HHHHHh
Q 038192 33 DLPIVMMEQEIMEAVNDNSAVIICGETGCGKTTQVPQFLFEAGFGSNRCSSRSGRIGVTQPRRVAVLATAK---RVAFEL 109 (764)
Q Consensus 33 ~LPi~~~~~~Il~~l~~~~vviI~GeTGSGKTTqvPq~Lle~~~~~~~~~~~~~~Ii~tQPRRiaAisvA~---RVa~E~ 109 (764)
.=|...+.+-|.++|..-+ |+.++..|-|||..+..--|+..--.. ..+.++|..-+|..|.++.+ |.++-+
T Consensus 63 ehpsevqhecipqailgmd-vlcqaksgmgktavfvl~tlqqiepv~----g~vsvlvmchtrelafqi~~ey~rfskym 137 (387)
T KOG0329|consen 63 EHPSEVQHECIPQAILGMD-VLCQAKSGMGKTAVFVLATLQQIEPVD----GQVSVLVMCHTRELAFQISKEYERFSKYM 137 (387)
T ss_pred CCchHhhhhhhhHHhhcch-hheecccCCCceeeeehhhhhhcCCCC----CeEEEEEEeccHHHHHHHHHHHHHHHhhC
Confidence 4588888888999999888 688999999999876655554322111 13678999999999999864 555555
Q ss_pred CCCCCCEe---eEEeccCcc-cCCCceEEEEchHHHHHHHHH-----------HHHHHHHHHhh-cccc---CCccCCC-
Q 038192 110 GLHLGKEV---GFQVRHDKK-IGDSCSIKFMTDGILLRELKA-----------LYEKQQQLLRS-GQCI---EPKDRVF- 169 (764)
Q Consensus 110 g~~lG~~V---GY~ir~e~~-~s~~t~I~f~T~GiLLr~l~~-----------i~de~~~~l~~-~~~~---~~~~~~~- 169 (764)
.. +-..| |..|.-+.. ...-..|+++|||+++...+. ++||.+.|+.. +... .+-+..|
T Consensus 138 P~-vkvaVFfGG~~Ikkdee~lk~~PhivVgTPGrilALvr~k~l~lk~vkhFvlDEcdkmle~lDMrRDvQEifr~tp~ 216 (387)
T KOG0329|consen 138 PS-VKVSVFFGGLFIKKDEELLKNCPHIVVGTPGRILALVRNRSLNLKNVKHFVLDECDKMLEQLDMRRDVQEIFRMTPH 216 (387)
T ss_pred CC-ceEEEEEcceeccccHHHHhCCCeEEEcCcHHHHHHHHhccCchhhcceeehhhHHHHHHHHHHHHHHHHHhhcCcc
Confidence 32 11122 334444332 234678999999999998753 67888876543 1111 1112223
Q ss_pred CceEEEeecccchh
Q 038192 170 PLKLILMSATLRVE 183 (764)
Q Consensus 170 ~lKlILMSATl~~~ 183 (764)
+-++..||||+.-+
T Consensus 217 ~KQvmmfsatlske 230 (387)
T KOG0329|consen 217 EKQVMMFSATLSKE 230 (387)
T ss_pred cceeeeeeeecchh
Confidence 45678889999544
No 99
>KOG0349 consensus Putative DEAD-box RNA helicase DDX1 [RNA processing and modification]
Probab=99.16 E-value=1.6e-10 Score=123.70 Aligned_cols=82 Identities=21% Similarity=0.268 Sum_probs=72.3
Q ss_pred CCeEEEecCCCCCHHHHHhhhccCCCCceEEEEecCcccccCCCCCeEEEEeCCcccceeeccCCCccccceeeccHHhH
Q 038192 435 GALCVLPLYAMLPAAAQLRVFEDVKEGERLVVVSTNVAETSLTIPGIKYVVDTGREKVKKYNSANGIESYEIQWISKASA 514 (764)
Q Consensus 435 ~~~~i~pLHs~l~~~eQ~~vf~~~~~g~rKVIlsTNIAEtSITIpdV~~VID~G~~K~~~yd~~~~~~~l~~~~iSkasa 514 (764)
..+.++.||+..-++|++.-++.|+++..|.+++|++|.++|+|.++-||||.-+ |-.|.+|
T Consensus 531 ~~~scvclhgDrkP~Erk~nle~Fkk~dvkflictdvaargldi~g~p~~invtl------------------pd~k~ny 592 (725)
T KOG0349|consen 531 KHYSCVCLHGDRKPDERKANLESFKKFDVKFLICTDVAARGLDITGLPFMINVTL------------------PDDKTNY 592 (725)
T ss_pred ccceeEEEecCCChhHHHHHHHhhhhcCeEEEEEehhhhccccccCCceEEEEec------------------Ccccchh
Confidence 4688999999999999999999999999999999999999999999999998443 4556778
Q ss_pred HHhccccCCCCC-CEEEEccC
Q 038192 515 AQRAGRAGRTAP-GHCYRLYS 534 (764)
Q Consensus 515 ~QR~GRAGR~~~-G~cyrLys 534 (764)
.||.||.||... |..+.|..
T Consensus 593 vhrigrvgraermglaislva 613 (725)
T KOG0349|consen 593 VHRIGRVGRAERMGLAISLVA 613 (725)
T ss_pred hhhhhccchhhhcceeEEEee
Confidence 899999999876 88877754
No 100
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=99.16 E-value=1.1e-10 Score=114.26 Aligned_cols=138 Identities=20% Similarity=0.204 Sum_probs=97.9
Q ss_pred hhHHHHHHHHHcCCeEEEEecCCCCccccHHHHHHHhccCCCCCCCCCceEEEecccHHHHHHHHHHHHHHhCCCCCCEe
Q 038192 38 MMEQEIMEAVNDNSAVIICGETGCGKTTQVPQFLFEAGFGSNRCSSRSGRIGVTQPRRVAVLATAKRVAFELGLHLGKEV 117 (764)
Q Consensus 38 ~~~~~Il~~l~~~~vviI~GeTGSGKTTqvPq~Lle~~~~~~~~~~~~~~Ii~tQPRRiaAisvA~RVa~E~g~~lG~~V 117 (764)
..|.++++.+.++..++|.|+||||||+....+++......+ ..++++..|++..+.++.+++....+. .+..+
T Consensus 2 ~~Q~~~~~~i~~~~~~li~aptGsGKT~~~~~~~l~~~~~~~-----~~~~lii~P~~~l~~q~~~~~~~~~~~-~~~~~ 75 (169)
T PF00270_consen 2 PLQQEAIEAIISGKNVLISAPTGSGKTLAYILPALNRLQEGK-----DARVLIIVPTRALAEQQFERLRKFFSN-TNVRV 75 (169)
T ss_dssp HHHHHHHHHHHTTSEEEEECSTTSSHHHHHHHHHHHHHHTTS-----SSEEEEEESSHHHHHHHHHHHHHHTTT-TTSSE
T ss_pred HHHHHHHHHHHcCCCEEEECCCCCccHHHHHHHHHhhhccCC-----CceEEEEeecccccccccccccccccc-ccccc
Confidence 457888888888888999999999999999988887655432 248999999999999999988766654 33333
Q ss_pred eEEeccCc-------ccCCCceEEEEchHHHHHHHHH-----------HHHHHHHHHhhccc------cCCccCCCCceE
Q 038192 118 GFQVRHDK-------KIGDSCSIKFMTDGILLRELKA-----------LYEKQQQLLRSGQC------IEPKDRVFPLKL 173 (764)
Q Consensus 118 GY~ir~e~-------~~s~~t~I~f~T~GiLLr~l~~-----------i~de~~~~l~~~~~------~~~~~~~~~lKl 173 (764)
..-..... ....+..|+|+|++.|++.+.. ++||+|.+....+. .......++.++
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~ilv~T~~~l~~~~~~~~~~~~~~~~iViDE~h~l~~~~~~~~~~~i~~~~~~~~~~~~ 155 (169)
T PF00270_consen 76 VLLHGGQSISEDQREVLSNQADILVTTPEQLLDLISNGKINISRLSLIVIDEAHHLSDETFRAMLKSILRRLKRFKNIQI 155 (169)
T ss_dssp EEESTTSCHHHHHHHHHHTTSSEEEEEHHHHHHHHHTTSSTGTTESEEEEETHHHHHHTTHHHHHHHHHHHSHTTTTSEE
T ss_pred ccccccccccccccccccccccccccCcchhhccccccccccccceeeccCcccccccccHHHHHHHHHHHhcCCCCCcE
Confidence 32222111 1124689999999999998863 45888765543211 111122347899
Q ss_pred EEeecccc
Q 038192 174 ILMSATLR 181 (764)
Q Consensus 174 ILMSATl~ 181 (764)
|+||||+.
T Consensus 156 i~~SAT~~ 163 (169)
T PF00270_consen 156 ILLSATLP 163 (169)
T ss_dssp EEEESSST
T ss_pred EEEeeCCC
Confidence 99999997
No 101
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=99.13 E-value=1.4e-09 Score=128.78 Aligned_cols=107 Identities=17% Similarity=0.123 Sum_probs=73.2
Q ss_pred hcCCCchhhHHHHHHHHHcCCeEEEEecCCCCccccHHHHHHHhccCCCCCCCCCceEEEecccHHHHHHHHHHHHHHhC
Q 038192 31 RKDLPIVMMEQEIMEAVNDNSAVIICGETGCGKTTQVPQFLFEAGFGSNRCSSRSGRIGVTQPRRVAVLATAKRVAFELG 110 (764)
Q Consensus 31 R~~LPi~~~~~~Il~~l~~~~vviI~GeTGSGKTTqvPq~Lle~~~~~~~~~~~~~~Ii~tQPRRiaAisvA~RVa~E~g 110 (764)
|+.|-...+--+++-.+.-++--|....||.|||...-..++.+++... .+.|.-|.+.+|...++.+..- -
T Consensus 76 ~R~lgm~~ydVQliGgl~L~~G~IaEm~TGEGKTL~a~lp~~l~al~g~-------~VhIvT~ndyLA~RD~e~m~~l-~ 147 (908)
T PRK13107 76 KRVFEMRHFDVQLLGGMVLDSNRIAEMRTGEGKTLTATLPAYLNALTGK-------GVHVITVNDYLARRDAENNRPL-F 147 (908)
T ss_pred HHHhCCCcCchHHhcchHhcCCccccccCCCCchHHHHHHHHHHHhcCC-------CEEEEeCCHHHHHHHHHHHHHH-H
Confidence 4455555556667777666666788999999999876666665555432 3667778888887777755433 3
Q ss_pred CCCCCEeeEEeccCc---ccCC-CceEEEEchHHH-HHHH
Q 038192 111 LHLGKEVGFQVRHDK---KIGD-SCSIKFMTDGIL-LREL 145 (764)
Q Consensus 111 ~~lG~~VGY~ir~e~---~~s~-~t~I~f~T~GiL-Lr~l 145 (764)
..+|-+||..+...+ +... .+.|+|+|+|-| ++.|
T Consensus 148 ~~lGlsv~~i~~~~~~~~r~~~Y~~dI~YgT~~e~gfDyL 187 (908)
T PRK13107 148 EFLGLTVGINVAGLGQQEKKAAYNADITYGTNNEFGFDYL 187 (908)
T ss_pred HhcCCeEEEecCCCCHHHHHhcCCCCeEEeCCCcccchhh
Confidence 457888887654432 1122 579999999999 7666
No 102
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=99.13 E-value=6.6e-10 Score=133.60 Aligned_cols=79 Identities=25% Similarity=0.324 Sum_probs=58.7
Q ss_pred EEEecCCCCCHHHHHhhhccC----CCCceEEEEecCcccccCCCCCeEEEEeCCcccceeeccCCCccccceeeccHHh
Q 038192 438 CVLPLYAMLPAAAQLRVFEDV----KEGERLVVVSTNVAETSLTIPGIKYVVDTGREKVKKYNSANGIESYEIQWISKAS 513 (764)
Q Consensus 438 ~i~pLHs~l~~~eQ~~vf~~~----~~g~rKVIlsTNIAEtSITIpdV~~VID~G~~K~~~yd~~~~~~~l~~~~iSkas 513 (764)
.++-|||.+...+|.+..+.. ..+.-.|||||-+.|-||||+ ..++| +....--|
T Consensus 466 ~v~LlHSRf~~~dR~~ke~~l~~~~~~~~~~IvVaTQVIEagvDid-fd~mI--------------------Te~aPidS 524 (733)
T COG1203 466 KVLLLHSRFTLKDREEKERELKKLFKQNEGFIVVATQVIEAGVDID-FDVLI--------------------TELAPIDS 524 (733)
T ss_pred CEEEEecccchhhHHHHHHHHHHHHhccCCeEEEEeeEEEEEeccc-cCeee--------------------ecCCCHHH
Confidence 689999999999988766521 345568999999999999996 56666 23444456
Q ss_pred HHHhccccCCCC---CCEEEEccCHHH
Q 038192 514 AAQRAGRAGRTA---PGHCYRLYSSAV 537 (764)
Q Consensus 514 a~QR~GRAGR~~---~G~cyrLys~~~ 537 (764)
..||+||..|-+ +|..|-.-....
T Consensus 525 LIQR~GRv~R~g~~~~~~~~v~~~~~~ 551 (733)
T COG1203 525 LIQRAGRVNRHGKKENGKIYVYNDEER 551 (733)
T ss_pred HHHHHHHHhhcccccCCceeEeecccC
Confidence 679999999998 466665544433
No 103
>KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=99.12 E-value=4.9e-10 Score=119.99 Aligned_cols=85 Identities=22% Similarity=0.297 Sum_probs=70.0
Q ss_pred CeEEEecCCCCCHHHHHhhhccCCCCceEEEEecCcccccCCCCCeEEEEeCCcccceeeccCCCccccceeeccHHhHH
Q 038192 436 ALCVLPLYAMLPAAAQLRVFEDVKEGERLVVVSTNVAETSLTIPGIKYVVDTGREKVKKYNSANGIESYEIQWISKASAA 515 (764)
Q Consensus 436 ~~~i~pLHs~l~~~eQ~~vf~~~~~g~rKVIlsTNIAEtSITIpdV~~VID~G~~K~~~yd~~~~~~~l~~~~iSkasa~ 515 (764)
++....+|++|-..||..|-+.--.+..-||+|||----|++-|+|+|||. ||+..+ -|-|-
T Consensus 279 Gi~A~AYHAGLK~~ERTeVQe~WM~~~~PvI~AT~SFGMGVDKp~VRFViH--------W~~~qn----------~AgYY 340 (641)
T KOG0352|consen 279 GIPAMAYHAGLKKKERTEVQEKWMNNEIPVIAATVSFGMGVDKPDVRFVIH--------WSPSQN----------LAGYY 340 (641)
T ss_pred CcchHHHhcccccchhHHHHHHHhcCCCCEEEEEeccccccCCcceeEEEe--------cCchhh----------hHHHH
Confidence 355667899999999999888878888999999999999999999999995 776554 35667
Q ss_pred HhccccCCCCC-CEEEEccCHHHh
Q 038192 516 QRAGRAGRTAP-GHCYRLYSSAVF 538 (764)
Q Consensus 516 QR~GRAGR~~~-G~cyrLys~~~~ 538 (764)
|-.|||||-|- ..|=--|++++-
T Consensus 341 QESGRAGRDGk~SyCRLYYsR~D~ 364 (641)
T KOG0352|consen 341 QESGRAGRDGKRSYCRLYYSRQDK 364 (641)
T ss_pred HhccccccCCCccceeeeecccch
Confidence 99999999996 667555666554
No 104
>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. The eukaryotic translation initiation factor 4A (eIF4A) is a member of the DEA(D/H)-box RNA helicase family This is a diverse group of proteins that couples an ATPase activity to RNA binding and unwinding. The structure of the carboxyl-terminal domain of eIF4A has been determined to 1.75 A resolution; it has a parallel alpha-beta topology that superimposes, with minor variations, on the structures and conserved motifs of the equivalent domain in other, distantly related helicases [].; GO: 0003676 nucleic acid binding, 0004386 helicase activity, 0005524 ATP binding; PDB: 2Z83_A 2JGN_C 2I4I_A 2BMF_A 2BHR_B 1WP9_E 2WAX_C 2WAY_C 3JUX_A 3DIN_B ....
Probab=99.12 E-value=5e-11 Score=101.91 Aligned_cols=73 Identities=21% Similarity=0.286 Sum_probs=66.3
Q ss_pred CCeEEEecCCCCCHHHHHhhhccCCCCceEEEEecCcccccCCCCCeEEEEeCCcccceeeccCCCccccceeeccHHhH
Q 038192 435 GALCVLPLYAMLPAAAQLRVFEDVKEGERLVVVSTNVAETSLTIPGIKYVVDTGREKVKKYNSANGIESYEIQWISKASA 514 (764)
Q Consensus 435 ~~~~i~pLHs~l~~~eQ~~vf~~~~~g~rKVIlsTNIAEtSITIpdV~~VID~G~~K~~~yd~~~~~~~l~~~~iSkasa 514 (764)
.++.+..+||+++.+++..+++.+..|..+|++||++++.||++|++.+||..+. +-|...+
T Consensus 6 ~~~~~~~i~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gid~~~~~~vi~~~~------------------~~~~~~~ 67 (78)
T PF00271_consen 6 KGIKVAIIHGDMSQKERQEILKKFNSGEIRVLIATDILGEGIDLPDASHVIFYDP------------------PWSPEEY 67 (78)
T ss_dssp TTSSEEEESTTSHHHHHHHHHHHHHTTSSSEEEESCGGTTSSTSTTESEEEESSS------------------ESSHHHH
T ss_pred CCCcEEEEECCCCHHHHHHHHHHhhccCceEEEeecccccccccccccccccccc------------------CCCHHHH
Confidence 3578999999999999999999999999999999999999999999999997443 5677888
Q ss_pred HHhccccCCCC
Q 038192 515 AQRAGRAGRTA 525 (764)
Q Consensus 515 ~QR~GRAGR~~ 525 (764)
.||.||+||.+
T Consensus 68 ~Q~~GR~~R~g 78 (78)
T PF00271_consen 68 IQRIGRAGRIG 78 (78)
T ss_dssp HHHHTTSSTTT
T ss_pred HHHhhcCCCCC
Confidence 99999999974
No 105
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=99.12 E-value=1.3e-09 Score=135.15 Aligned_cols=104 Identities=18% Similarity=0.341 Sum_probs=68.8
Q ss_pred EEecCCCCCHHHHHhhhccCCCCce-EEEEecCcccccCCCCCeEEEEeCCcccceeeccCCCccccceeeccHHhHHHh
Q 038192 439 VLPLYAMLPAAAQLRVFEDVKEGER-LVVVSTNVAETSLTIPGIKYVVDTGREKVKKYNSANGIESYEIQWISKASAAQR 517 (764)
Q Consensus 439 i~pLHs~l~~~eQ~~vf~~~~~g~r-KVIlsTNIAEtSITIpdV~~VID~G~~K~~~yd~~~~~~~l~~~~iSkasa~QR 517 (764)
+..+||+.+. ..++++.|.++.- +|+++++++.||+++|+|.+||- +++. -|+.-+.|+
T Consensus 734 v~~itg~~~~--~~~li~~Fk~~~~p~IlVsvdmL~TG~DvP~v~~vVf--------~rpv----------kS~~lf~Qm 793 (1123)
T PRK11448 734 VIKITGSIDK--PDQLIRRFKNERLPNIVVTVDLLTTGIDVPSICNLVF--------LRRV----------RSRILYEQM 793 (1123)
T ss_pred eEEEeCCccc--hHHHHHHHhCCCCCeEEEEecccccCCCcccccEEEE--------ecCC----------CCHHHHHHH
Confidence 4457777753 4457777776654 79999999999999999999993 3322 367778899
Q ss_pred ccccCCCCC--CE-EEEccCHH-HhcccCCCCC--CCccc--ccChhhHHHHHH
Q 038192 518 AGRAGRTAP--GH-CYRLYSSA-VFNNILPDFS--CAEIS--KVPVDGVVLLMK 563 (764)
Q Consensus 518 ~GRAGR~~~--G~-cyrLys~~-~~~~~l~~~~--~PEI~--r~~L~~~~L~lk 563 (764)
.||+.|.+| |+ +|.+|.-- .|+ .+.++. .|... ..+|..++-.+.
T Consensus 794 IGRgtR~~~~~~K~~f~I~D~vg~~~-~l~~~~~~~p~~~~~~~~l~~l~~~~~ 846 (1123)
T PRK11448 794 LGRATRLCPEIGKTHFRIFDAVDIYE-ALESVTTMKPVVVNPNISLEQLVNELT 846 (1123)
T ss_pred HhhhccCCccCCCceEEEEehHHHHH-hccccccCCccccCCCCCHHHHHHHHh
Confidence 999999998 44 56666532 222 233322 34432 356666644443
No 106
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=99.06 E-value=2.9e-09 Score=120.98 Aligned_cols=135 Identities=18% Similarity=0.161 Sum_probs=86.2
Q ss_pred cCCCchhhHHHHHHHHHc----CCeEEEEecCCCCccccHHHHHHHhccCCCCCCCCCceEEEecccHHHHHHHHHHHHH
Q 038192 32 KDLPIVMMEQEIMEAVND----NSAVIICGETGCGKTTQVPQFLFEAGFGSNRCSSRSGRIGVTQPRRVAVLATAKRVAF 107 (764)
Q Consensus 32 ~~LPi~~~~~~Il~~l~~----~~vviI~GeTGSGKTTqvPq~Lle~~~~~~~~~~~~~~Ii~tQPRRiaAisvA~RVa~ 107 (764)
.......+|++.++++.+ ++-.+|+.+||+|||..-...+-+-. .+++|..||+.++.|-+++...
T Consensus 33 ~~~~lr~yQ~~al~a~~~~~~~~~~gvivlpTGaGKT~va~~~~~~~~----------~~~Lvlv~~~~L~~Qw~~~~~~ 102 (442)
T COG1061 33 FEFELRPYQEEALDALVKNRRTERRGVIVLPTGAGKTVVAAEAIAELK----------RSTLVLVPTKELLDQWAEALKK 102 (442)
T ss_pred cCCCCcHHHHHHHHHHHhhcccCCceEEEeCCCCCHHHHHHHHHHHhc----------CCEEEEECcHHHHHHHHHHHHH
Confidence 445567788999999888 67788899999999966555544322 3488999999999999888877
Q ss_pred HhCCCCCCEeeEEeccCcccCCCceEEEEchHHHHHH--HHH---------HHHHHHHHHhhccccCCccCCCCce-EEE
Q 038192 108 ELGLHLGKEVGFQVRHDKKIGDSCSIKFMTDGILLRE--LKA---------LYEKQQQLLRSGQCIEPKDRVFPLK-LIL 175 (764)
Q Consensus 108 E~g~~lG~~VGY~ir~e~~~s~~t~I~f~T~GiLLr~--l~~---------i~de~~~~l~~~~~~~~~~~~~~lK-lIL 175 (764)
..+.. ..+|.-=.......+ ..|+|.|--.+.+. +.. |+||+|..-...+.. +........ ++-
T Consensus 103 ~~~~~--~~~g~~~~~~~~~~~-~~i~vat~qtl~~~~~l~~~~~~~~~liI~DE~Hh~~a~~~~~-~~~~~~~~~~~LG 178 (442)
T COG1061 103 FLLLN--DEIGIYGGGEKELEP-AKVTVATVQTLARRQLLDEFLGNEFGLIIFDEVHHLPAPSYRR-ILELLSAAYPRLG 178 (442)
T ss_pred hcCCc--cccceecCceeccCC-CcEEEEEhHHHhhhhhhhhhcccccCEEEEEccccCCcHHHHH-HHHhhhcccceee
Confidence 66553 122211111111111 46999999999885 321 568877543211110 001113344 899
Q ss_pred eeccc
Q 038192 176 MSATL 180 (764)
Q Consensus 176 MSATl 180 (764)
+|||.
T Consensus 179 LTATp 183 (442)
T COG1061 179 LTATP 183 (442)
T ss_pred eccCc
Confidence 99996
No 107
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=99.06 E-value=4.9e-10 Score=113.62 Aligned_cols=148 Identities=22% Similarity=0.175 Sum_probs=97.4
Q ss_pred chhhHHHHHHHHHcCCeEEEEecCCCCccccHHHHHHHhccCCCCCCCCCceEEEecccHHHHHHHHHHHHHHhCCCCCC
Q 038192 36 IVMMEQEIMEAVNDNSAVIICGETGCGKTTQVPQFLFEAGFGSNRCSSRSGRIGVTQPRRVAVLATAKRVAFELGLHLGK 115 (764)
Q Consensus 36 i~~~~~~Il~~l~~~~vviI~GeTGSGKTTqvPq~Lle~~~~~~~~~~~~~~Ii~tQPRRiaAisvA~RVa~E~g~~lG~ 115 (764)
.+.+|.+.++.+.+++.++++++||+|||..+...+++....... ....++++..|++..+.+.++.+.. .+...+.
T Consensus 22 ~~~~Q~~~~~~~~~~~~~li~~~TG~GKT~~~~~~~l~~~~~~~~--~~~~~viii~p~~~L~~q~~~~~~~-~~~~~~~ 98 (203)
T cd00268 22 PTPIQARAIPPLLSGRDVIGQAQTGSGKTAAFLIPILEKLDPSPK--KDGPQALILAPTRELALQIAEVARK-LGKHTNL 98 (203)
T ss_pred CCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHHHHhhcc--cCCceEEEEcCCHHHHHHHHHHHHH-HhccCCc
Confidence 466788888888888999999999999998877777665443210 0125788889999999998886644 3333344
Q ss_pred EeeEEeccCc------ccCCCceEEEEchHHHHHHHHH-----------HHHHHHHHHhhccccC---C-ccCCCCceEE
Q 038192 116 EVGFQVRHDK------KIGDSCSIKFMTDGILLRELKA-----------LYEKQQQLLRSGQCIE---P-KDRVFPLKLI 174 (764)
Q Consensus 116 ~VGY~ir~e~------~~s~~t~I~f~T~GiLLr~l~~-----------i~de~~~~l~~~~~~~---~-~~~~~~lKlI 174 (764)
.++.-....+ ....+..|++||++.|++.+.. ++||+|.+...++... + ....++.+++
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~l~~lIvDE~h~~~~~~~~~~~~~~~~~l~~~~~~~ 178 (203)
T cd00268 99 KVVVIYGGTSIDKQIRKLKRGPHIVVATPGRLLDLLERGKLDLSKVKYLVLDEADRMLDMGFEDQIREILKLLPKDRQTL 178 (203)
T ss_pred eEEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHcCCCChhhCCEEEEeChHHhhccChHHHHHHHHHhCCcccEEE
Confidence 4432222111 1123678999999999997732 5688887654432111 1 1123478999
Q ss_pred Eeecccc--hhhhc
Q 038192 175 LMSATLR--VEDFI 186 (764)
Q Consensus 175 LMSATl~--~~~f~ 186 (764)
+||||+. .+.+.
T Consensus 179 ~~SAT~~~~~~~~~ 192 (203)
T cd00268 179 LFSATMPKEVRDLA 192 (203)
T ss_pred EEeccCCHHHHHHH
Confidence 9999994 44443
No 108
>KOG0351 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=99.01 E-value=3.6e-09 Score=127.58 Aligned_cols=84 Identities=25% Similarity=0.284 Sum_probs=72.8
Q ss_pred EEecCCCCCHHHHHhhhccCCCCceEEEEecCcccccCCCCCeEEEEeCCcccceeeccCCCccccceeeccHHhHHHhc
Q 038192 439 VLPLYAMLPAAAQLRVFEDVKEGERLVVVSTNVAETSLTIPGIKYVVDTGREKVKKYNSANGIESYEIQWISKASAAQRA 518 (764)
Q Consensus 439 i~pLHs~l~~~eQ~~vf~~~~~g~rKVIlsTNIAEtSITIpdV~~VID~G~~K~~~yd~~~~~~~l~~~~iSkasa~QR~ 518 (764)
...+|++|+..+|..|-..+-.++.+||+||=.---||+-|||++||.++++|.. .+|-|=+
T Consensus 512 a~~YHAGl~~~~R~~Vq~~w~~~~~~VivATVAFGMGIdK~DVR~ViH~~lPks~------------------E~YYQE~ 573 (941)
T KOG0351|consen 512 AAFYHAGLPPKERETVQKAWMSDKIRVIVATVAFGMGIDKPDVRFVIHYSLPKSF------------------EGYYQEA 573 (941)
T ss_pred hHhhhcCCCHHHHHHHHHHHhcCCCeEEEEEeeccCCCCCCceeEEEECCCchhH------------------HHHHHhc
Confidence 4457999999999999999999999999999999999999999999998877643 2344999
Q ss_pred cccCCCCC-CEEEEccCHHHhcc
Q 038192 519 GRAGRTAP-GHCYRLYSSAVFNN 540 (764)
Q Consensus 519 GRAGR~~~-G~cyrLys~~~~~~ 540 (764)
|||||-|- -.|.-+|+-.++..
T Consensus 574 GRAGRDG~~s~C~l~y~~~D~~~ 596 (941)
T KOG0351|consen 574 GRAGRDGLPSSCVLLYGYADISE 596 (941)
T ss_pred cccCcCCCcceeEEecchhHHHH
Confidence 99999985 99999999887653
No 109
>smart00490 HELICc helicase superfamily c-terminal domain.
Probab=98.99 E-value=4.5e-10 Score=95.78 Aligned_cols=72 Identities=35% Similarity=0.439 Sum_probs=66.1
Q ss_pred CeEEEecCCCCCHHHHHhhhccCCCCceEEEEecCcccccCCCCCeEEEEeCCcccceeeccCCCccccceeeccHHhHH
Q 038192 436 ALCVLPLYAMLPAAAQLRVFEDVKEGERLVVVSTNVAETSLTIPGIKYVVDTGREKVKKYNSANGIESYEIQWISKASAA 515 (764)
Q Consensus 436 ~~~i~pLHs~l~~~eQ~~vf~~~~~g~rKVIlsTNIAEtSITIpdV~~VID~G~~K~~~yd~~~~~~~l~~~~iSkasa~ 515 (764)
++.+..+||+++.++|..+++.+..+..+|+++|+++++|+++|++.+||..+. |.|.+.+.
T Consensus 11 ~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gi~~~~~~~vi~~~~------------------~~~~~~~~ 72 (82)
T smart00490 11 GIKVARLHGGLSQEEREEILEKFNNGKIKVLVATDVAERGLDLPGVDLVIIYDL------------------PWSPASYI 72 (82)
T ss_pred CCeEEEEECCCCHHHHHHHHHHHHcCCCeEEEECChhhCCcChhcCCEEEEeCC------------------CCCHHHHH
Confidence 578999999999999999999999999999999999999999999999997543 67888999
Q ss_pred HhccccCCCC
Q 038192 516 QRAGRAGRTA 525 (764)
Q Consensus 516 QR~GRAGR~~ 525 (764)
||.||+||.+
T Consensus 73 Q~~gR~~R~g 82 (82)
T smart00490 73 QRIGRAGRAG 82 (82)
T ss_pred HhhcccccCC
Confidence 9999999964
No 110
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=98.98 E-value=2.3e-09 Score=99.94 Aligned_cols=122 Identities=25% Similarity=0.284 Sum_probs=88.9
Q ss_pred eEEEEecCCCCccccHHHHHHHhccCCCCCCCCCceEEEecccHHHHHHHHHHHHHHhCCCCCCEeeEEeccCccc----
Q 038192 52 AVIICGETGCGKTTQVPQFLFEAGFGSNRCSSRSGRIGVTQPRRVAVLATAKRVAFELGLHLGKEVGFQVRHDKKI---- 127 (764)
Q Consensus 52 vviI~GeTGSGKTTqvPq~Lle~~~~~~~~~~~~~~Ii~tQPRRiaAisvA~RVa~E~g~~lG~~VGY~ir~e~~~---- 127 (764)
.++|.|+||||||+++..++.+...... ..+++++.|++.++.+..+++...... +..+.+-.......
T Consensus 2 ~~~i~~~~G~GKT~~~~~~~~~~~~~~~-----~~~~lv~~p~~~l~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 74 (144)
T cd00046 2 DVLLAAPTGSGKTLAALLPILELLDSLK-----GGQVLVLAPTRELANQVAERLKELFGE--GIKVGYLIGGTSIKQQEK 74 (144)
T ss_pred CEEEECCCCCchhHHHHHHHHHHHhccc-----CCCEEEEcCcHHHHHHHHHHHHHHhhC--CcEEEEEecCcchhHHHH
Confidence 4789999999999999999887654321 258999999999999999988876654 55666666655544
Q ss_pred --CCCceEEEEchHHHHHHHHH-----------HHHHHHHHHhhcccc----CCccCCCCceEEEeeccc
Q 038192 128 --GDSCSIKFMTDGILLRELKA-----------LYEKQQQLLRSGQCI----EPKDRVFPLKLILMSATL 180 (764)
Q Consensus 128 --s~~t~I~f~T~GiLLr~l~~-----------i~de~~~~l~~~~~~----~~~~~~~~lKlILMSATl 180 (764)
.....|+++|.+.+.+.+.. ++||+|......... ......+..++++||||+
T Consensus 75 ~~~~~~~i~i~t~~~~~~~~~~~~~~~~~~~~iiiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~saTp 144 (144)
T cd00046 75 LLSGKTDIVVGTPGRLLDELERLKLSLKKLDLLILDEAHRLLNQGFGLLGLKILLKLPKDRQVLLLSATP 144 (144)
T ss_pred HhcCCCCEEEECcHHHHHHHHcCCcchhcCCEEEEeCHHHHhhcchHHHHHHHHhhCCccceEEEEeccC
Confidence 46789999999999887742 568887643322111 112234667899999995
No 111
>KOG0947 consensus Cytoplasmic exosomal RNA helicase SKI2, DEAD-box superfamily [RNA processing and modification]
Probab=98.90 E-value=3.5e-08 Score=114.91 Aligned_cols=159 Identities=21% Similarity=0.281 Sum_probs=103.6
Q ss_pred CchhhHHHHHHHHHcCCeEEEEecCCCCccccHHHHHHHhccC--CCCCCCCCceEEEecccHHHHHHHHHHHHHHhCCC
Q 038192 35 PIVMMEQEIMEAVNDNSAVIICGETGCGKTTQVPQFLFEAGFG--SNRCSSRSGRIGVTQPRRVAVLATAKRVAFELGLH 112 (764)
Q Consensus 35 Pi~~~~~~Il~~l~~~~vviI~GeTGSGKTTqvPq~Lle~~~~--~~~~~~~~~~Ii~tQPRRiaAisvA~RVa~E~g~~ 112 (764)
-+-.+|++.+.+++.++-|+|.|.|.+|||. +.|.+.. ... ..+.+-|-|-+. +|--+ -.++.+.
T Consensus 297 elD~FQk~Ai~~lerg~SVFVAAHTSAGKTv-----VAEYAialaq~h----~TR~iYTSPIKA--LSNQK--fRDFk~t 363 (1248)
T KOG0947|consen 297 ELDTFQKEAIYHLERGDSVFVAAHTSAGKTV-----VAEYAIALAQKH----MTRTIYTSPIKA--LSNQK--FRDFKET 363 (1248)
T ss_pred CccHHHHHHHHHHHcCCeEEEEecCCCCcch-----HHHHHHHHHHhh----ccceEecchhhh--hccch--HHHHHHh
Confidence 3556788889999999999999999999993 3332211 111 147888999764 33322 2223333
Q ss_pred CCCEeeEEeccCcccCCCceEEEEchHHHHHHHHH-----------HHHHHHH--HHhhccc-cCCcc-CCCCceEEEee
Q 038192 113 LGKEVGFQVRHDKKIGDSCSIKFMTDGILLRELKA-----------LYEKQQQ--LLRSGQC-IEPKD-RVFPLKLILMS 177 (764)
Q Consensus 113 lG~~VGY~ir~e~~~s~~t~I~f~T~GiLLr~l~~-----------i~de~~~--~l~~~~~-~~~~~-~~~~lKlILMS 177 (764)
.| .|| -+.+|....+...+++|||.||-.+|=. |+||+|- ++..|.. .++.- ..++.++|+.|
T Consensus 364 F~-Dvg-LlTGDvqinPeAsCLIMTTEILRsMLYrgadliRDvE~VIFDEVHYiND~eRGvVWEEViIMlP~HV~~IlLS 441 (1248)
T KOG0947|consen 364 FG-DVG-LLTGDVQINPEASCLIMTTEILRSMLYRGADLIRDVEFVIFDEVHYINDVERGVVWEEVIIMLPRHVNFILLS 441 (1248)
T ss_pred cc-ccc-eeecceeeCCCcceEeehHHHHHHHHhcccchhhccceEEEeeeeecccccccccceeeeeeccccceEEEEe
Confidence 33 244 4667778889999999999999888821 6788774 3344431 11111 23589999999
Q ss_pred ccc-chhhhccccCCCCCC-----CeeeeCCcccceeEEe
Q 038192 178 ATL-RVEDFISGGRLFRNP-----PIIEVPTRQFPVTVHF 211 (764)
Q Consensus 178 ATl-~~~~f~~~~~~f~~~-----~vi~i~gr~~pV~~~y 211 (764)
||+ |...|+ .+.|.. -||.-.-|..|.+.++
T Consensus 442 ATVPN~~EFA---~WIGRtK~K~IyViST~kRPVPLEh~l 478 (1248)
T KOG0947|consen 442 ATVPNTLEFA---DWIGRTKQKTIYVISTSKRPVPLEHYL 478 (1248)
T ss_pred ccCCChHHHH---HHhhhccCceEEEEecCCCccceEEEE
Confidence 999 888998 476652 2344445667776543
No 112
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=98.87 E-value=3.3e-09 Score=98.89 Aligned_cols=77 Identities=31% Similarity=0.452 Sum_probs=68.2
Q ss_pred eEEEecCCCCCHHHHHhhhccCCCCceEEEEecCcccccCCCCCeEEEEeCCcccceeeccCCCccccceeeccHHhHHH
Q 038192 437 LCVLPLYAMLPAAAQLRVFEDVKEGERLVVVSTNVAETSLTIPGIKYVVDTGREKVKKYNSANGIESYEIQWISKASAAQ 516 (764)
Q Consensus 437 ~~i~pLHs~l~~~eQ~~vf~~~~~g~rKVIlsTNIAEtSITIpdV~~VID~G~~K~~~yd~~~~~~~l~~~~iSkasa~Q 516 (764)
..+..+||+++..++..+++.+.+|..+|+++|+.++.|+++|++..||- +++ |.+.....|
T Consensus 53 ~~~~~~~~~~~~~~~~~~~~~f~~~~~~ili~t~~~~~G~d~~~~~~vi~--------~~~----------~~~~~~~~Q 114 (131)
T cd00079 53 IKVAALHGDGSQEEREEVLKDFREGEIVVLVATDVIARGIDLPNVSVVIN--------YDL----------PWSPSSYLQ 114 (131)
T ss_pred CcEEEEECCCCHHHHHHHHHHHHcCCCcEEEEcChhhcCcChhhCCEEEE--------eCC----------CCCHHHhee
Confidence 56999999999999999999999999999999999999999999999994 332 566777889
Q ss_pred hccccCCCC-CCEEEE
Q 038192 517 RAGRAGRTA-PGHCYR 531 (764)
Q Consensus 517 R~GRAGR~~-~G~cyr 531 (764)
+.||+||.+ .|.|+-
T Consensus 115 ~~GR~~R~~~~~~~~~ 130 (131)
T cd00079 115 RIGRAGRAGQKGTAIL 130 (131)
T ss_pred cccccccCCCCceEEe
Confidence 999999999 488875
No 113
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=98.86 E-value=1.4e-08 Score=100.66 Aligned_cols=152 Identities=26% Similarity=0.236 Sum_probs=101.0
Q ss_pred CchhhHHHHHHHHHcC-CeEEEEecCCCCccccHHHHHHHhccCCCCCCCCCceEEEecccHHHHHHHHHHHHHHhCCCC
Q 038192 35 PIVMMEQEIMEAVNDN-SAVIICGETGCGKTTQVPQFLFEAGFGSNRCSSRSGRIGVTQPRRVAVLATAKRVAFELGLHL 113 (764)
Q Consensus 35 Pi~~~~~~Il~~l~~~-~vviI~GeTGSGKTTqvPq~Lle~~~~~~~~~~~~~~Ii~tQPRRiaAisvA~RVa~E~g~~l 113 (764)
+...+|.+++..+.+. +.++|.|+||||||+.+..++++...... ..+++++.|++.++.+..+++........
T Consensus 8 ~~~~~Q~~~~~~~~~~~~~~~i~~~~GsGKT~~~~~~~~~~~~~~~-----~~~~l~~~p~~~~~~~~~~~~~~~~~~~~ 82 (201)
T smart00487 8 PLRPYQKEAIEALLSGLRDVILAAPTGSGKTLAALLPALEALKRGK-----GKRVLVLVPTRELAEQWAEELKKLGPSLG 82 (201)
T ss_pred CCCHHHHHHHHHHHcCCCcEEEECCCCCchhHHHHHHHHHHhcccC-----CCcEEEEeCCHHHHHHHHHHHHHHhccCC
Confidence 4466788888998887 88999999999999999999888654432 25799999999999999988877664322
Q ss_pred CCEeeEEeccCc-----ccC-CCceEEEEchHHHHHHHHH-----------HHHHHHHHHhhccc---cCC-ccCCCCce
Q 038192 114 GKEVGFQVRHDK-----KIG-DSCSIKFMTDGILLRELKA-----------LYEKQQQLLRSGQC---IEP-KDRVFPLK 172 (764)
Q Consensus 114 G~~VGY~ir~e~-----~~s-~~t~I~f~T~GiLLr~l~~-----------i~de~~~~l~~~~~---~~~-~~~~~~lK 172 (764)
+..+.+--.... ... ....++++|.+.+.+.+.. ++||+|........ ..+ ....+..+
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~t~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~~~~ 162 (201)
T smart00487 83 LKVVGLYGGDSKREQLRKLESGKTDILVTTPGRLLDLLENDLLELSNVDLVILDEAHRLLDGGFGDQLEKLLKLLPKNVQ 162 (201)
T ss_pred eEEEEEeCCcchHHHHHHHhcCCCCEEEeChHHHHHHHHcCCcCHhHCCEEEEECHHHHhcCCcHHHHHHHHHhCCccce
Confidence 122211111110 122 2338999999999998743 45888765431110 001 11135789
Q ss_pred EEEeeccc--chhhhccccCCCC
Q 038192 173 LILMSATL--RVEDFISGGRLFR 193 (764)
Q Consensus 173 lILMSATl--~~~~f~~~~~~f~ 193 (764)
+|+||||. +...+.. .++.
T Consensus 163 ~v~~saT~~~~~~~~~~--~~~~ 183 (201)
T smart00487 163 LLLLSATPPEEIENLLE--LFLN 183 (201)
T ss_pred EEEEecCCchhHHHHHH--HhcC
Confidence 99999999 4555543 3554
No 114
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=98.81 E-value=1.7e-08 Score=119.32 Aligned_cols=87 Identities=28% Similarity=0.329 Sum_probs=68.5
Q ss_pred EEEecCCCCCHHHHHhhhccCCCCceEEEEecCcccccCCC---CCeE-----EEEeCCcccceeeccCCCccccceeec
Q 038192 438 CVLPLYAMLPAAAQLRVFEDVKEGERLVVVSTNVAETSLTI---PGIK-----YVVDTGREKVKKYNSANGIESYEIQWI 509 (764)
Q Consensus 438 ~i~pLHs~l~~~eQ~~vf~~~~~g~rKVIlsTNIAEtSITI---pdV~-----~VID~G~~K~~~yd~~~~~~~l~~~~i 509 (764)
....||+.+...|...+-+...+|. |.||||+|.||++| ++|. +||.+.++ -
T Consensus 466 ~~~~Lna~~~~~Ea~ii~~ag~~g~--VtIATnmAGRGtDI~l~~~V~~~GGLhVI~te~p------------------e 525 (796)
T PRK12906 466 PHAVLNAKNHAKEAEIIMNAGQRGA--VTIATNMAGRGTDIKLGPGVKELGGLAVIGTERH------------------E 525 (796)
T ss_pred CeeEecCCcHHHHHHHHHhcCCCce--EEEEeccccCCCCCCCCcchhhhCCcEEEeeecC------------------C
Confidence 3457788888888888888877775 99999999999999 5999 99985543 3
Q ss_pred cHHhHHHhccccCCCCC-CEEEEccCHHHhcccCCCCC
Q 038192 510 SKASAAQRAGRAGRTAP-GHCYRLYSSAVFNNILPDFS 546 (764)
Q Consensus 510 Skasa~QR~GRAGR~~~-G~cyrLys~~~~~~~l~~~~ 546 (764)
|+-...||.|||||.|. |.+.-++|-++ ++|..|.
T Consensus 526 s~ri~~Ql~GRtGRqG~~G~s~~~~sleD--~l~~~f~ 561 (796)
T PRK12906 526 SRRIDNQLRGRSGRQGDPGSSRFYLSLED--DLMRRFG 561 (796)
T ss_pred cHHHHHHHhhhhccCCCCcceEEEEeccc--hHHHhhC
Confidence 44455699999999996 99988888763 3455444
No 115
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=98.77 E-value=9.8e-09 Score=121.35 Aligned_cols=88 Identities=23% Similarity=0.272 Sum_probs=74.5
Q ss_pred CeEEEecCCCCCHHHHHhhhccCCCCceEEEEecCcccccCCCCCeEEEEeCCcccceeeccCCCccccceeeccHHhHH
Q 038192 436 ALCVLPLYAMLPAAAQLRVFEDVKEGERLVVVSTNVAETSLTIPGIKYVVDTGREKVKKYNSANGIESYEIQWISKASAA 515 (764)
Q Consensus 436 ~~~i~pLHs~l~~~eQ~~vf~~~~~g~rKVIlsTNIAEtSITIpdV~~VID~G~~K~~~yd~~~~~~~l~~~~iSkasa~ 515 (764)
++.+..+||.+++.+|.++++.++.|...|+||||++++|+++|+|.+||. +|... -..+-|..++.
T Consensus 466 gi~~~~lh~~~~~~eR~~~l~~fr~G~i~VLV~t~~L~rGfDiP~v~lVvi--------~Dadi-----fG~p~~~~~~i 532 (655)
T TIGR00631 466 GIKVRYLHSEIDTLERVEIIRDLRLGEFDVLVGINLLREGLDLPEVSLVAI--------LDADK-----EGFLRSERSLI 532 (655)
T ss_pred ccceeeeeCCCCHHHHHHHHHHHhcCCceEEEEcChhcCCeeeCCCcEEEE--------eCccc-----ccCCCCHHHHH
Confidence 467888999999999999999999999999999999999999999999995 33221 01234667889
Q ss_pred HhccccCCCCCCEEEEccCHH
Q 038192 516 QRAGRAGRTAPGHCYRLYSSA 536 (764)
Q Consensus 516 QR~GRAGR~~~G~cyrLys~~ 536 (764)
||+|||||..+|.|+-+++..
T Consensus 533 qriGRagR~~~G~vi~~~~~~ 553 (655)
T TIGR00631 533 QTIGRAARNVNGKVIMYADKI 553 (655)
T ss_pred HHhcCCCCCCCCEEEEEEcCC
Confidence 999999999999999887753
No 116
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=98.74 E-value=1.7e-08 Score=119.94 Aligned_cols=87 Identities=23% Similarity=0.256 Sum_probs=74.7
Q ss_pred CeEEEecCCCCCHHHHHhhhccCCCCceEEEEecCcccccCCCCCeEEEEeCCcccceeeccCCCccccceeeccHHhHH
Q 038192 436 ALCVLPLYAMLPAAAQLRVFEDVKEGERLVVVSTNVAETSLTIPGIKYVVDTGREKVKKYNSANGIESYEIQWISKASAA 515 (764)
Q Consensus 436 ~~~i~pLHs~l~~~eQ~~vf~~~~~g~rKVIlsTNIAEtSITIpdV~~VID~G~~K~~~yd~~~~~~~l~~~~iSkasa~ 515 (764)
++.+..+||.+++.+|..++..+++|...|+|||+++++|+++|+|.+||.+ |.... ..|-+..++.
T Consensus 470 gi~~~~~h~~~~~~~R~~~l~~f~~g~i~vlV~t~~L~rGfdlp~v~lVii~--------d~eif-----G~~~~~~~yi 536 (652)
T PRK05298 470 GIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGINLLREGLDIPEVSLVAIL--------DADKE-----GFLRSERSLI 536 (652)
T ss_pred ceeEEEEECCCCHHHHHHHHHHHHcCCceEEEEeCHHhCCccccCCcEEEEe--------CCccc-----ccCCCHHHHH
Confidence 5788999999999999999999999999999999999999999999999963 32210 1234677899
Q ss_pred HhccccCCCCCCEEEEccCH
Q 038192 516 QRAGRAGRTAPGHCYRLYSS 535 (764)
Q Consensus 516 QR~GRAGR~~~G~cyrLys~ 535 (764)
||+|||||...|.|+-+++.
T Consensus 537 qr~GR~gR~~~G~~i~~~~~ 556 (652)
T PRK05298 537 QTIGRAARNVNGKVILYADK 556 (652)
T ss_pred HHhccccCCCCCEEEEEecC
Confidence 99999999988999998884
No 117
>KOG0950 consensus DNA polymerase theta/eta, DEAD-box superfamily [General function prediction only]
Probab=98.72 E-value=1.2e-07 Score=111.29 Aligned_cols=87 Identities=21% Similarity=0.279 Sum_probs=74.5
Q ss_pred eEEEecCCCCCHHHHHhhhccCCCCceEEEEecCcccccCCCCCeEEEEeCCcccceeeccCCCccccceeeccHHhHHH
Q 038192 437 LCVLPLYAMLPAAAQLRVFEDVKEGERLVVVSTNVAETSLTIPGIKYVVDTGREKVKKYNSANGIESYEIQWISKASAAQ 516 (764)
Q Consensus 437 ~~i~pLHs~l~~~eQ~~vf~~~~~g~rKVIlsTNIAEtSITIpdV~~VID~G~~K~~~yd~~~~~~~l~~~~iSkasa~Q 516 (764)
+-+---|++++.++|.-|-..++.|...|++||.-...|+..|..++.|- .......+.++..|+|
T Consensus 523 ~GvAyHhaGLT~eER~~iE~afr~g~i~vl~aTSTlaaGVNLPArRVIir--------------aP~~g~~~l~~~~YkQ 588 (1008)
T KOG0950|consen 523 YGVAYHHAGLTSEEREIIEAAFREGNIFVLVATSTLAAGVNLPARRVIIR--------------APYVGREFLTRLEYKQ 588 (1008)
T ss_pred ccceecccccccchHHHHHHHHHhcCeEEEEecchhhccCcCCcceeEEe--------------CCccccchhhhhhHHh
Confidence 34666799999999999999999999999999999999999999999993 2233445678999999
Q ss_pred hccccCCCCC---CEEEEccCHHH
Q 038192 517 RAGRAGRTAP---GHCYRLYSSAV 537 (764)
Q Consensus 517 R~GRAGR~~~---G~cyrLys~~~ 537 (764)
+.|||||++- |.|+-.+.+..
T Consensus 589 M~GRAGR~gidT~GdsiLI~k~~e 612 (1008)
T KOG0950|consen 589 MVGRAGRTGIDTLGDSILIIKSSE 612 (1008)
T ss_pred hhhhhhhcccccCcceEEEeeccc
Confidence 9999999974 88998888754
No 118
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=98.61 E-value=1.4e-07 Score=112.54 Aligned_cols=86 Identities=22% Similarity=0.222 Sum_probs=64.5
Q ss_pred EEecCCCCCHHHHHhhhccCCCCceEEEEecCcccccCCCC---CeEE-----EEeCCcccceeeccCCCccccceeecc
Q 038192 439 VLPLYAMLPAAAQLRVFEDVKEGERLVVVSTNVAETSLTIP---GIKY-----VVDTGREKVKKYNSANGIESYEIQWIS 510 (764)
Q Consensus 439 i~pLHs~l~~~eQ~~vf~~~~~g~rKVIlsTNIAEtSITIp---dV~~-----VID~G~~K~~~yd~~~~~~~l~~~~iS 510 (764)
.-.||+ .+.+|...+..+..+.-.|.||||+|.||++|+ +|.. ||++.++. |
T Consensus 625 h~vLna--kq~~REa~Iia~AG~~g~VtIATNMAGRGtDIkl~~~V~~vGGL~VIgterhe------------------s 684 (1025)
T PRK12900 625 HNVLNA--KQHDREAEIVAEAGQKGAVTIATNMAGRGTDIKLGEGVRELGGLFILGSERHE------------------S 684 (1025)
T ss_pred ceeecC--CHHHhHHHHHHhcCCCCeEEEeccCcCCCCCcCCccchhhhCCceeeCCCCCc------------------h
Confidence 345665 466777888888888889999999999999999 6643 47654432 3
Q ss_pred HHhHHHhccccCCCCC-CEEEEccCHHHhcccCCCCC
Q 038192 511 KASAAQRAGRAGRTAP-GHCYRLYSSAVFNNILPDFS 546 (764)
Q Consensus 511 kasa~QR~GRAGR~~~-G~cyrLys~~~~~~~l~~~~ 546 (764)
+-.+.||+|||||.|. |.+.-++|.++- +|..|.
T Consensus 685 ~Rid~Ql~GRtGRqGdpGsS~ffvSleD~--Lmr~f~ 719 (1025)
T PRK12900 685 RRIDRQLRGRAGRQGDPGESVFYVSLEDE--LMRLFG 719 (1025)
T ss_pred HHHHHHHhhhhhcCCCCcceEEEechhHH--HHHhhC
Confidence 3345699999999996 999999998764 454443
No 119
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=98.52 E-value=2.4e-07 Score=113.00 Aligned_cols=83 Identities=11% Similarity=0.060 Sum_probs=69.3
Q ss_pred CeEEEecCCCCCHHHHHhhhccCCC--CceEEEEecCcccccCCCCCeEEEEeCCcccceeeccCCCccccceeeccHHh
Q 038192 436 ALCVLPLYAMLPAAAQLRVFEDVKE--GERLVVVSTNVAETSLTIPGIKYVVDTGREKVKKYNSANGIESYEIQWISKAS 513 (764)
Q Consensus 436 ~~~i~pLHs~l~~~eQ~~vf~~~~~--g~rKVIlsTNIAEtSITIpdV~~VID~G~~K~~~yd~~~~~~~l~~~~iSkas 513 (764)
++.+..+||+|++.+|.++++.|.. |..+|+|||+++.+|++++.+.+||+ ||.+. +-..
T Consensus 518 Gi~~~~ihG~~s~~eR~~~~~~F~~~~~~~~VLIsTdvgseGlNlq~a~~VIn--------fDlP~----------nP~~ 579 (956)
T PRK04914 518 GIRAAVFHEGMSIIERDRAAAYFADEEDGAQVLLCSEIGSEGRNFQFASHLVL--------FDLPF----------NPDL 579 (956)
T ss_pred CeeEEEEECCCCHHHHHHHHHHHhcCCCCccEEEechhhccCCCcccccEEEE--------ecCCC----------CHHH
Confidence 5788999999999999999999976 45889999999999999999999997 66544 3455
Q ss_pred HHHhccccCCCCC---CEEEEccCHH
Q 038192 514 AAQRAGRAGRTAP---GHCYRLYSSA 536 (764)
Q Consensus 514 a~QR~GRAGR~~~---G~cyrLys~~ 536 (764)
+.||.||+||-|. -..|.++.+.
T Consensus 580 ~eQRIGR~~RiGQ~~~V~i~~~~~~~ 605 (956)
T PRK04914 580 LEQRIGRLDRIGQKHDIQIHVPYLEG 605 (956)
T ss_pred HHHHhcccccCCCCceEEEEEccCCC
Confidence 6699999999765 4567777763
No 120
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=98.35 E-value=3.6e-07 Score=86.53 Aligned_cols=118 Identities=22% Similarity=0.193 Sum_probs=72.6
Q ss_pred cCCeEEEEecCCCCcccc-HHHHHHHhccCCCCCCCCCceEEEecccHHHHHHHHHHHHHHhCCCCCCEeeEEeccCc-c
Q 038192 49 DNSAVIICGETGCGKTTQ-VPQFLFEAGFGSNRCSSRSGRIGVTQPRRVAVLATAKRVAFELGLHLGKEVGFQVRHDK-K 126 (764)
Q Consensus 49 ~~~vviI~GeTGSGKTTq-vPq~Lle~~~~~~~~~~~~~~Ii~tQPRRiaAisvA~RVa~E~g~~lG~~VGY~ir~e~-~ 126 (764)
.++..+|.-.+|+|||+. +|+++-|.. ..+ .+++|..|+|..|-.+++.+ . |..+.|+...-. .
T Consensus 3 kg~~~~~d~hpGaGKTr~vlp~~~~~~i-~~~------~rvLvL~PTRvva~em~~aL----~---~~~~~~~t~~~~~~ 68 (148)
T PF07652_consen 3 KGELTVLDLHPGAGKTRRVLPEIVREAI-KRR------LRVLVLAPTRVVAEEMYEAL----K---GLPVRFHTNARMRT 68 (148)
T ss_dssp TTEEEEEE--TTSSTTTTHHHHHHHHHH-HTT--------EEEEESSHHHHHHHHHHT----T---TSSEEEESTTSS--
T ss_pred CCceeEEecCCCCCCcccccHHHHHHHH-Hcc------CeEEEecccHHHHHHHHHHH----h---cCCcccCceeeecc
Confidence 466788999999999998 677666654 322 58999999999877766644 2 234667655442 2
Q ss_pred cCCCceEEEEchHHHHHHHHH----------HHHHHHH-----HHhhccccCCccCCCCceEEEeecccc
Q 038192 127 IGDSCSIKFMTDGILLRELKA----------LYEKQQQ-----LLRSGQCIEPKDRVFPLKLILMSATLR 181 (764)
Q Consensus 127 ~s~~t~I~f~T~GiLLr~l~~----------i~de~~~-----~l~~~~~~~~~~~~~~lKlILMSATl~ 181 (764)
...++-|.+||.+-+.+.+.. |.||+|- ....|.+.... .....++|+||||..
T Consensus 69 ~~g~~~i~vMc~at~~~~~~~p~~~~~yd~II~DEcH~~Dp~sIA~rg~l~~~~-~~g~~~~i~mTATPP 137 (148)
T PF07652_consen 69 HFGSSIIDVMCHATYGHFLLNPCRLKNYDVIIMDECHFTDPTSIAARGYLRELA-ESGEAKVIFMTATPP 137 (148)
T ss_dssp --SSSSEEEEEHHHHHHHHHTSSCTTS-SEEEECTTT--SHHHHHHHHHHHHHH-HTTS-EEEEEESS-T
T ss_pred ccCCCcccccccHHHHHHhcCcccccCccEEEEeccccCCHHHHhhheeHHHhh-hccCeeEEEEeCCCC
Confidence 345677999999999988743 5577652 12222222111 113578999999984
No 121
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=98.31 E-value=9.4e-07 Score=105.43 Aligned_cols=115 Identities=16% Similarity=0.162 Sum_probs=85.7
Q ss_pred chhhHHHHHHHHHcCCeEEEEecCCCCccccHHHHHHHhccCCCCCCCCCceEEEecccHHHHHHHHHHHHHHhCCCCCC
Q 038192 36 IVMMEQEIMEAVNDNSAVIICGETGCGKTTQVPQFLFEAGFGSNRCSSRSGRIGVTQPRRVAVLATAKRVAFELGLHLGK 115 (764)
Q Consensus 36 i~~~~~~Il~~l~~~~vviI~GeTGSGKTTqvPq~Lle~~~~~~~~~~~~~~Ii~tQPRRiaAisvA~RVa~E~g~~lG~ 115 (764)
...++.+++..+..++.+|..+.||+|||..+-..++....... .+.|..|+|.+|.++++ +...++..+|-
T Consensus 93 ~tp~qvQ~I~~i~l~~gvIAeaqTGeGKTLAf~LP~l~~aL~g~-------~v~IVTpTrELA~Qdae-~m~~L~k~lGL 164 (970)
T PRK12899 93 MVPYDVQILGAIAMHKGFITEMQTGEGKTLTAVMPLYLNALTGK-------PVHLVTVNDYLAQRDCE-WVGSVLRWLGL 164 (970)
T ss_pred CChHHHHHhhhhhcCCCeEEEeCCCCChHHHHHHHHHHHHhhcC-------CeEEEeCCHHHHHHHHH-HHHHHHhhcCC
Confidence 66778888888888888999999999999988777776664321 24556788999999988 44556667788
Q ss_pred EeeEEeccCccc----CCCceEEEEchHHH-HHHHHH------------------HHHHHHHHHhh
Q 038192 116 EVGFQVRHDKKI----GDSCSIKFMTDGIL-LRELKA------------------LYEKQQQLLRS 158 (764)
Q Consensus 116 ~VGY~ir~e~~~----s~~t~I~f~T~GiL-Lr~l~~------------------i~de~~~~l~~ 158 (764)
+||.-+...+.. .-.++|+|+|||.| ++.|++ |+||+|++|.+
T Consensus 165 sV~~i~GG~~~~eq~~~y~~DIVygTPgRLgfDyLrd~~~~~~~~~~vqr~~~~~IIDEADsmLiD 230 (970)
T PRK12899 165 TTGVLVSGSPLEKRKEIYQCDVVYGTASEFGFDYLRDNSIATRKEEQVGRGFYFAIIDEVDSILID 230 (970)
T ss_pred eEEEEeCCCCHHHHHHHcCCCEEEECCChhHHHHhhCCCCCcCHHHhhcccccEEEEechhhhhhh
Confidence 888766544321 12578999999999 888732 45888877653
No 122
>KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification]
Probab=98.31 E-value=1.8e-05 Score=88.40 Aligned_cols=88 Identities=27% Similarity=0.369 Sum_probs=65.9
Q ss_pred EEEecCCCCCHHH---HHhhhccCCCCceEEEEecCcccccCCCCCeEEEEeCCcccceeeccCCCccccceeeccHHhH
Q 038192 438 CVLPLYAMLPAAA---QLRVFEDVKEGERLVVVSTNVAETSLTIPGIKYVVDTGREKVKKYNSANGIESYEIQWISKASA 514 (764)
Q Consensus 438 ~i~pLHs~l~~~e---Q~~vf~~~~~g~rKVIlsTNIAEtSITIpdV~~VID~G~~K~~~yd~~~~~~~l~~~~iSkasa 514 (764)
.+...||+||++- |...|+. |.+..+|+||||..--|+.+ +|+=|| |......+.-.+..|+-+++
T Consensus 383 k~aVIYGsLPPeTr~aQA~~FNd-~~~e~dvlVAsDAIGMGLNL-~IrRii---------F~sl~Kysg~e~~~it~sqi 451 (700)
T KOG0953|consen 383 KCAVIYGSLPPETRLAQAALFND-PSNECDVLVASDAIGMGLNL-NIRRII---------FYSLIKYSGRETEDITVSQI 451 (700)
T ss_pred ceEEEecCCCCchhHHHHHHhCC-CCCccceEEeeccccccccc-ceeEEE---------EeecccCCcccceeccHHHH
Confidence 3666789998764 5556665 45788999999999999988 577777 33333344556788999999
Q ss_pred HHhccccCCCCC----CEEEEccCHH
Q 038192 515 AQRAGRAGRTAP----GHCYRLYSSA 536 (764)
Q Consensus 515 ~QR~GRAGR~~~----G~cyrLys~~ 536 (764)
+|=+|||||.+. |..=.|+++.
T Consensus 452 kQIAGRAGRf~s~~~~G~vTtl~~eD 477 (700)
T KOG0953|consen 452 KQIAGRAGRFGSKYPQGEVTTLHSED 477 (700)
T ss_pred HHHhhcccccccCCcCceEEEeeHhh
Confidence 999999999863 7666666653
No 123
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=98.26 E-value=4.3e-05 Score=90.86 Aligned_cols=104 Identities=16% Similarity=0.108 Sum_probs=68.2
Q ss_pred CchhhHHHHHHHHHcCCeEEEEecCCCCccccHHHHHHHhccCCCCCCCCCceEEEecccHHHHHHHHHHHHHHhCCCCC
Q 038192 35 PIVMMEQEIMEAVNDNSAVIICGETGCGKTTQVPQFLFEAGFGSNRCSSRSGRIGVTQPRRVAVLATAKRVAFELGLHLG 114 (764)
Q Consensus 35 Pi~~~~~~Il~~l~~~~vviI~GeTGSGKTTqvPq~Lle~~~~~~~~~~~~~~Ii~tQPRRiaAisvA~RVa~E~g~~lG 114 (764)
+-|..|..-..-+-.++-.-|.||||.||||.--.+=+-.+.. ..+..+.-|++.++.|+++|+.+ +++..|
T Consensus 82 ~~ws~QR~WakR~~rg~SFaiiAPTGvGKTTfg~~~sl~~a~k-------gkr~yii~PT~~Lv~Q~~~kl~~-~~e~~~ 153 (1187)
T COG1110 82 RPWSAQRVWAKRLVRGKSFAIIAPTGVGKTTFGLLMSLYLAKK-------GKRVYIIVPTTTLVRQVYERLKK-FAEDAG 153 (1187)
T ss_pred CchHHHHHHHHHHHcCCceEEEcCCCCchhHHHHHHHHHHHhc-------CCeEEEEecCHHHHHHHHHHHHH-HHhhcC
Confidence 5555555666666667767788999999999744332222211 14788889999999999999975 333333
Q ss_pred ---CEeeEEeccCcc---------cCCCceEEEEchHHHHHHHH
Q 038192 115 ---KEVGFQVRHDKK---------IGDSCSIKFMTDGILLRELK 146 (764)
Q Consensus 115 ---~~VGY~ir~e~~---------~s~~t~I~f~T~GiLLr~l~ 146 (764)
..++|+-.+-.+ .+.+-+|++.|+..|-+...
T Consensus 154 ~~~~~~~yh~~l~~~ekee~le~i~~gdfdIlitTs~FL~k~~e 197 (1187)
T COG1110 154 SLDVLVVYHSALPTKEKEEALERIESGDFDILITTSQFLSKRFE 197 (1187)
T ss_pred CcceeeeeccccchHHHHHHHHHHhcCCccEEEEeHHHHHhhHH
Confidence 233354332221 13467899999999988663
No 124
>KOG0353 consensus ATP-dependent DNA helicase [General function prediction only]
Probab=98.25 E-value=3.5e-05 Score=82.04 Aligned_cols=57 Identities=18% Similarity=0.192 Sum_probs=46.9
Q ss_pred eEEEecCCCCCHHHHHhhhccCCCCceEEEEecCcccccCCCCCeEEEEeCCcccce
Q 038192 437 LCVLPLYAMLPAAAQLRVFEDVKEGERLVVVSTNVAETSLTIPGIKYVVDTGREKVK 493 (764)
Q Consensus 437 ~~i~pLHs~l~~~eQ~~vf~~~~~g~rKVIlsTNIAEtSITIpdV~~VID~G~~K~~ 493 (764)
+..-.+|+.|.++++..+-+.--.|...|||||=.-.-||+-|||+|||.-.++|..
T Consensus 342 i~a~~yha~lep~dks~~hq~w~a~eiqvivatvafgmgidkpdvrfvihhsl~ksi 398 (695)
T KOG0353|consen 342 IHAGAYHANLEPEDKSGAHQGWIAGEIQVIVATVAFGMGIDKPDVRFVIHHSLPKSI 398 (695)
T ss_pred ccccccccccCccccccccccccccceEEEEEEeeecccCCCCCeeEEEecccchhH
Confidence 334456777777777777777778899999999999999999999999988877754
No 125
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=98.03 E-value=0.00019 Score=84.13 Aligned_cols=102 Identities=16% Similarity=0.144 Sum_probs=63.0
Q ss_pred hcCCCchhhHHHHHHHHHcCCeEEEEecCCCCccccHHHHHHHhccCCCCCCCCCceEEEecccHHHHHHHHHHHHHHhC
Q 038192 31 RKDLPIVMMEQEIMEAVNDNSAVIICGETGCGKTTQVPQFLFEAGFGSNRCSSRSGRIGVTQPRRVAVLATAKRVAFELG 110 (764)
Q Consensus 31 R~~LPi~~~~~~Il~~l~~~~vviI~GeTGSGKTTqvPq~Lle~~~~~~~~~~~~~~Ii~tQPRRiaAisvA~RVa~E~g 110 (764)
++.|-...+--+++-++.-++--|..=.||+|||.......+-.+... ..+.|.-|...+|..-|+....-.
T Consensus 72 ~R~lg~r~ydvQlig~l~Ll~G~VaEM~TGEGKTLvA~l~a~l~AL~G-------~~VhvvT~NdyLA~RDae~m~~ly- 143 (764)
T PRK12326 72 ERTLGLRPFDVQLLGALRLLAGDVIEMATGEGKTLAGAIAAAGYALQG-------RRVHVITVNDYLARRDAEWMGPLY- 143 (764)
T ss_pred HHHcCCCcchHHHHHHHHHhCCCcccccCCCCHHHHHHHHHHHHHHcC-------CCeEEEcCCHHHHHHHHHHHHHHH-
Confidence 445555555666666654444345566799999976544444444332 246667788888877777654433
Q ss_pred CCCCCEeeEEeccCccc----CCCceEEEEchHH
Q 038192 111 LHLGKEVGFQVRHDKKI----GDSCSIKFMTDGI 140 (764)
Q Consensus 111 ~~lG~~VGY~ir~e~~~----s~~t~I~f~T~Gi 140 (764)
..+|-+||+-..-.+.. -=.+.|+|+|+.=
T Consensus 144 ~~LGLsvg~i~~~~~~~err~aY~~DItYgTn~e 177 (764)
T PRK12326 144 EALGLTVGWITEESTPEERRAAYACDVTYASVNE 177 (764)
T ss_pred HhcCCEEEEECCCCCHHHHHHHHcCCCEEcCCcc
Confidence 35788899754432211 1257899999973
No 126
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=98.00 E-value=0.00066 Score=79.86 Aligned_cols=98 Identities=16% Similarity=0.328 Sum_probs=65.0
Q ss_pred HHhhhccCCCCceEEEEecCcccccCCCCCeEEEEeCCcccceeeccCCCccccceeeccHHhHHHhccccCCCCC--C-
Q 038192 451 QLRVFEDVKEGERLVVVSTNVAETSLTIPGIKYVVDTGREKVKKYNSANGIESYEIQWISKASAAQRAGRAGRTAP--G- 527 (764)
Q Consensus 451 Q~~vf~~~~~g~rKVIlsTNIAEtSITIpdV~~VID~G~~K~~~yd~~~~~~~l~~~~iSkasa~QR~GRAGR~~~--G- 527 (764)
+..-|.. +...-.|+++-+..-|||++|-|+.+| |+... -||.-+.|..||+=|.+| |
T Consensus 471 ~Id~f~~-ke~~P~IaitvdlL~TGiDvpev~nlV---------F~r~V---------rSktkF~QMvGRGTRl~~~~~~ 531 (875)
T COG4096 471 LIDNFID-KEKYPRIAITVDLLTTGVDVPEVVNLV---------FDRKV---------RSKTKFKQMVGRGTRLCPDLGG 531 (875)
T ss_pred HHHHHHh-cCCCCceEEehhhhhcCCCchheeeee---------ehhhh---------hhHHHHHHHhcCccccCccccC
Confidence 3344544 223346999999999999999999988 44322 388899999999999987 5
Q ss_pred -----EEEEccC---HHHhcccCCCCCCCcccccChhhHHHHHHHcCCC
Q 038192 528 -----HCYRLYS---SAVFNNILPDFSCAEISKVPVDGVVLLMKSMNID 568 (764)
Q Consensus 528 -----~cyrLys---~~~~~~~l~~~~~PEI~r~~L~~~~L~lk~l~~~ 568 (764)
.-|-+|. -..|-+ |.+...++-.+.+|+.=++.....+..
T Consensus 532 ~~~dK~~F~ifDf~~~~~~~~-~~~~~~e~~~~~~l~~rLF~~~~~~~~ 579 (875)
T COG4096 532 PEQDKEFFTIFDFVDNTEYFE-MDPEMREGRVRVSLEQRLFADRLFDLE 579 (875)
T ss_pred ccccceeEEEEEhhhhhhhhc-cCcccccccccchHHHHHhhhhhccCc
Confidence 2334443 222323 455666667777777666655554443
No 127
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=97.89 E-value=0.00024 Score=85.16 Aligned_cols=140 Identities=14% Similarity=0.078 Sum_probs=79.3
Q ss_pred cCCCchhhHHHH---HHHHHc------CCeEEEEecCCCCccccHH---HHHHHhccCCCCCCCCCceEEEecccHHHHH
Q 038192 32 KDLPIVMMEQEI---MEAVND------NSAVIICGETGCGKTTQVP---QFLFEAGFGSNRCSSRSGRIGVTQPRRVAVL 99 (764)
Q Consensus 32 ~~LPi~~~~~~I---l~~l~~------~~vviI~GeTGSGKTTqvP---q~Lle~~~~~~~~~~~~~~Ii~tQPRRiaAi 99 (764)
+..|.|.+...| ++.+.+ .+--+|..+||||||.... +.|++.. ...+|++.-||+.+.-
T Consensus 236 k~~~r~~Q~~av~~~~~~~~~~~~~~~~~~gli~~~TGsGKT~t~~~la~~l~~~~--------~~~~vl~lvdR~~L~~ 307 (667)
T TIGR00348 236 KPYQRYMQYRAVKKIVESITRKTWGKDERGGLIWHTQGSGKTLTMLFAARKALELL--------KNPKVFFVVDRRELDY 307 (667)
T ss_pred eeehHHHHHHHHHHHHHHHHhcccCCCCceeEEEEecCCCccHHHHHHHHHHHhhc--------CCCeEEEEECcHHHHH
Confidence 344555554443 444443 3467888999999995433 3333211 1258999999999998
Q ss_pred HHHHHHHHHhCCCCCCEeeEEeccCcc-cCCCceEEEEchHHHHHHHHH--------------HHHHHHHHHhhccccCC
Q 038192 100 ATAKRVAFELGLHLGKEVGFQVRHDKK-IGDSCSIKFMTDGILLRELKA--------------LYEKQQQLLRSGQCIEP 164 (764)
Q Consensus 100 svA~RVa~E~g~~lG~~VGY~ir~e~~-~s~~t~I~f~T~GiLLr~l~~--------------i~de~~~~l~~~~~~~~ 164 (764)
|..+....-..... ..++..-.+... ......|+|+|-.-|.+.+.. +.||+|+.--..+...+
T Consensus 308 Q~~~~f~~~~~~~~-~~~~s~~~L~~~l~~~~~~iivtTiQk~~~~~~~~~~~~~~~~~~~lvIvDEaHrs~~~~~~~~l 386 (667)
T TIGR00348 308 QLMKEFQSLQKDCA-ERIESIAELKRLLEKDDGGIIITTIQKFDKKLKEEEEKFPVDRKEVVVIFDEAHRSQYGELAKNL 386 (667)
T ss_pred HHHHHHHhhCCCCC-cccCCHHHHHHHHhCCCCCEEEEEhHHhhhhHhhhhhccCCCCCCEEEEEEcCccccchHHHHHH
Confidence 88876554321111 001100000011 123467999999988764421 45787764322211111
Q ss_pred ccCCCCceEEEeeccc
Q 038192 165 KDRVFPLKLILMSATL 180 (764)
Q Consensus 165 ~~~~~~lKlILMSATl 180 (764)
....|+...+.||||.
T Consensus 387 ~~~~p~a~~lGfTaTP 402 (667)
T TIGR00348 387 KKALKNASFFGFTGTP 402 (667)
T ss_pred HhhCCCCcEEEEeCCC
Confidence 2234677899999999
No 128
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=97.79 E-value=1e-05 Score=79.75 Aligned_cols=133 Identities=14% Similarity=0.108 Sum_probs=77.2
Q ss_pred chhhHHHHHHHHHc-------CCeEEEEecCCCCccccHHHHHHHhccCCCCCCCCCceEEEecccHHHHHHHHHHHHHH
Q 038192 36 IVMMEQEIMEAVND-------NSAVIICGETGCGKTTQVPQFLFEAGFGSNRCSSRSGRIGVTQPRRVAVLATAKRVAFE 108 (764)
Q Consensus 36 i~~~~~~Il~~l~~-------~~vviI~GeTGSGKTTqvPq~Lle~~~~~~~~~~~~~~Ii~tQPRRiaAisvA~RVa~E 108 (764)
...+|++.+..+.+ +..+++.++||||||-..-.++++... ++++..|+...+-+..+.+...
T Consensus 4 lr~~Q~~ai~~i~~~~~~~~~~~~~ll~~~tGsGKT~~~~~~~~~l~~----------~~l~~~p~~~l~~Q~~~~~~~~ 73 (184)
T PF04851_consen 4 LRPYQQEAIARIINSLENKKEERRVLLNAPTGSGKTIIALALILELAR----------KVLIVAPNISLLEQWYDEFDDF 73 (184)
T ss_dssp E-HHHHHHHHHHHHHHHTTSGCSEEEEEESTTSSHHHHHHHHHHHHHC----------EEEEEESSHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCcChhhhhhhhcccc----------ceeEecCHHHHHHHHHHHHHHh
Confidence 45667777776663 588999999999999777666666542 6777779987777776666222
Q ss_pred hCCCCCCEee-----------EEecc------CcccCCCceEEEEchHHHHHHHHH----------------------HH
Q 038192 109 LGLHLGKEVG-----------FQVRH------DKKIGDSCSIKFMTDGILLRELKA----------------------LY 149 (764)
Q Consensus 109 ~g~~lG~~VG-----------Y~ir~------e~~~s~~t~I~f~T~GiLLr~l~~----------------------i~ 149 (764)
..... ...+ +.... .........+.+.|...|...... |+
T Consensus 74 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vI~ 152 (184)
T PF04851_consen 74 GSEKY-NFFEKSIKPAYDSKEFISIQDDISDKSESDNNDKDIILTTYQSLQSDIKEEKKIDESARRSYKLLKNKFDLVII 152 (184)
T ss_dssp STTSE-EEEE--GGGCCE-SEEETTTTEEEHHHHHCBSS-SEEEEEHHHHHHHHHH---------GCHHGGGGSESEEEE
T ss_pred hhhhh-hhcccccccccccccccccccccccccccccccccchhhHHHHHHhhcccccccccchhhhhhhccccCCEEEE
Confidence 12111 0000 00010 011234678999999998877532 34
Q ss_pred HHHHHHHhhccccCCccCCCCceEEEeeccc
Q 038192 150 EKQQQLLRSGQCIEPKDRVFPLKLILMSATL 180 (764)
Q Consensus 150 de~~~~l~~~~~~~~~~~~~~lKlILMSATl 180 (764)
||+|..........+.. .+.-.+|.||||.
T Consensus 153 DEaH~~~~~~~~~~i~~-~~~~~~l~lTATp 182 (184)
T PF04851_consen 153 DEAHHYPSDSSYREIIE-FKAAFILGLTATP 182 (184)
T ss_dssp ETGGCTHHHHHHHHHHH-SSCCEEEEEESS-
T ss_pred ehhhhcCCHHHHHHHHc-CCCCeEEEEEeCc
Confidence 66664322220101111 4567899999997
No 129
>PF13245 AAA_19: Part of AAA domain
Probab=97.78 E-value=5.7e-05 Score=64.47 Aligned_cols=60 Identities=23% Similarity=0.296 Sum_probs=46.0
Q ss_pred HHHHHHcCCeEEEEecCCCCccccHHHHHHHhccCCCCCCCCCceEEEecccHHHHHHHHHHH
Q 038192 43 IMEAVNDNSAVIICGETGCGKTTQVPQFLFEAGFGSNRCSSRSGRIGVTQPRRVAVLATAKRV 105 (764)
Q Consensus 43 Il~~l~~~~vviI~GeTGSGKTTqvPq~Lle~~~~~~~~~~~~~~Ii~tQPRRiaAisvA~RV 105 (764)
|..++.++++++|.|++|||||+.+-+.+.+....... . ..+|+|..|+|.||..+++|+
T Consensus 3 v~~al~~~~~~vv~g~pGtGKT~~~~~~i~~l~~~~~~--~-~~~vlv~a~t~~aa~~l~~rl 62 (76)
T PF13245_consen 3 VRRALAGSPLFVVQGPPGTGKTTTLAARIAELLAARAD--P-GKRVLVLAPTRAAADELRERL 62 (76)
T ss_pred HHHHHhhCCeEEEECCCCCCHHHHHHHHHHHHHHHhcC--C-CCeEEEECCCHHHHHHHHHHH
Confidence 44577778889999999999998877777665421110 0 258999999999999999988
No 130
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=97.63 E-value=0.00013 Score=86.60 Aligned_cols=146 Identities=16% Similarity=0.146 Sum_probs=87.1
Q ss_pred CCchhhHHHHHHHHHcC----CeEEEEecCCCCccccHHHHHHHhccCCCCCCCCCceEEEecccHHHHHHHHHHHHHHh
Q 038192 34 LPIVMMEQEIMEAVNDN----SAVIICGETGCGKTTQVPQFLFEAGFGSNRCSSRSGRIGVTQPRRVAVLATAKRVAFEL 109 (764)
Q Consensus 34 LPi~~~~~~Il~~l~~~----~vviI~GeTGSGKTTqvPq~Lle~~~~~~~~~~~~~~Ii~tQPRRiaAisvA~RVa~E~ 109 (764)
+.....++...+.|..+ ...++.|-||||||-..-+.+-+... .+ ..+++.-|-=-..-++.+|+-..+
T Consensus 197 ~~Ln~~Q~~a~~~i~~~~~~~~~~Ll~GvTGSGKTEvYl~~i~~~L~-~G------kqvLvLVPEI~Ltpq~~~rf~~rF 269 (730)
T COG1198 197 LALNQEQQAAVEAILSSLGGFAPFLLDGVTGSGKTEVYLEAIAKVLA-QG------KQVLVLVPEIALTPQLLARFKARF 269 (730)
T ss_pred cccCHHHHHHHHHHHHhcccccceeEeCCCCCcHHHHHHHHHHHHHH-cC------CEEEEEeccccchHHHHHHHHHHh
Confidence 44555566666666554 78999999999999877776655432 22 378889997666777888888777
Q ss_pred CCCCCCE---eeEEeccCc---ccCCCceEEEEchHHHHHHHHH----HH-HHHHHHHhhcc--cc------CCccCCCC
Q 038192 110 GLHLGKE---VGFQVRHDK---KIGDSCSIKFMTDGILLRELKA----LY-EKQQQLLRSGQ--CI------EPKDRVFP 170 (764)
Q Consensus 110 g~~lG~~---VGY~ir~e~---~~s~~t~I~f~T~GiLLr~l~~----i~-de~~~~l~~~~--~~------~~~~~~~~ 170 (764)
|.+++.. .+=+-|++. -.+...+|+++|=--|.-=+.+ |+ +||+....... .- ....+.-+
T Consensus 270 g~~v~vlHS~Ls~~er~~~W~~~~~G~~~vVIGtRSAlF~Pf~~LGLIIvDEEHD~sYKq~~~prYhARdvA~~Ra~~~~ 349 (730)
T COG1198 270 GAKVAVLHSGLSPGERYRVWRRARRGEARVVIGTRSALFLPFKNLGLIIVDEEHDSSYKQEDGPRYHARDVAVLRAKKEN 349 (730)
T ss_pred CCChhhhcccCChHHHHHHHHHHhcCCceEEEEechhhcCchhhccEEEEeccccccccCCcCCCcCHHHHHHHHHHHhC
Confidence 7655421 111122221 1235678999886544433322 33 44443322110 00 00112246
Q ss_pred ceEEEeecccchhhhc
Q 038192 171 LKLILMSATLRVEDFI 186 (764)
Q Consensus 171 lKlILMSATl~~~~f~ 186 (764)
..+||=|||...|.+.
T Consensus 350 ~pvvLgSATPSLES~~ 365 (730)
T COG1198 350 APVVLGSATPSLESYA 365 (730)
T ss_pred CCEEEecCCCCHHHHH
Confidence 7899999999988775
No 131
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.
Probab=97.60 E-value=0.0019 Score=78.55 Aligned_cols=45 Identities=18% Similarity=0.285 Sum_probs=32.5
Q ss_pred HhhhcCCCchhhHHHHHHHHHc--------CCeEEEEecCCCCccccHHHHHH
Q 038192 28 ENNRKDLPIVMMEQEIMEAVND--------NSAVIICGETGCGKTTQVPQFLF 72 (764)
Q Consensus 28 ~~~R~~LPi~~~~~~Il~~l~~--------~~vviI~GeTGSGKTTqvPq~Ll 72 (764)
.++|..-|-|+.++...+.+.. +=.+|--|.||||||..=-.+++
T Consensus 401 ~~~r~~~~rF~WQdkA~d~a~~~r~~~~~~GfF~vNMASTGcGKT~aNARImy 453 (1110)
T TIGR02562 401 FCQRSAHPRFRWQNKAFNLAQKLRQKSPEQGAFGVNMASTGCGKTLANARAMY 453 (1110)
T ss_pred hccCCCCCCcchHHHHHHHHHHHHhhcccCCeEEEEecCCCcchHHHHHHHHH
Confidence 3467888999999988777654 12456689999999976444443
No 132
>KOG0949 consensus Predicted helicase, DEAD-box superfamily [General function prediction only]
Probab=97.53 E-value=0.00086 Score=79.50 Aligned_cols=97 Identities=20% Similarity=0.156 Sum_probs=69.5
Q ss_pred EEecCCCCCHHHHHhhhccCCCCceEEEEecCcccccCCCCCeEEEEeCCcccceeeccCCCccccceeeccHHhHHHhc
Q 038192 439 VLPLYAMLPAAAQLRVFEDVKEGERLVVVSTNVAETSLTIPGIKYVVDTGREKVKKYNSANGIESYEIQWISKASAAQRA 518 (764)
Q Consensus 439 i~pLHs~l~~~eQ~~vf~~~~~g~rKVIlsTNIAEtSITIpdV~~VID~G~~K~~~yd~~~~~~~l~~~~iSkasa~QR~ 518 (764)
|-.-|++|...+|..|---|+.|.-.|++||-...-||..|--++|. +.++|+..| -++.|.+
T Consensus 965 iG~HHaglNr~yR~~VEvLFR~g~L~VlfaT~TLsLGiNMPCrTVvF--------------~gDsLQL~p---lny~Qma 1027 (1330)
T KOG0949|consen 965 IGVHHAGLNRKYRSLVEVLFRQGHLQVLFATETLSLGINMPCRTVVF--------------AGDSLQLDP---LNYKQMA 1027 (1330)
T ss_pred ccccccccchHHHHHHHHHhhcCceEEEEEeeehhcccCCCceeEEE--------------eccccccCc---hhHHhhh
Confidence 45569999999999998889999999999999999999999544333 122344333 4789999
Q ss_pred cccCCCCC---CE-EEEccCHHHhcccCCCCCCCccccc
Q 038192 519 GRAGRTAP---GH-CYRLYSSAVFNNILPDFSCAEISKV 553 (764)
Q Consensus 519 GRAGR~~~---G~-cyrLys~~~~~~~l~~~~~PEI~r~ 553 (764)
|||||-|= |. .|-=.+...-.++| ....|.|+-.
T Consensus 1028 GRAGRRGFD~lGnV~FmgiP~~kv~rLl-ts~L~diqG~ 1065 (1330)
T KOG0949|consen 1028 GRAGRRGFDTLGNVVFMGIPRQKVQRLL-TSLLPDIQGA 1065 (1330)
T ss_pred ccccccccccccceEEEeCcHHHHHHHH-HHhhhcccCC
Confidence 99999873 54 44444554444433 4566777765
No 133
>CHL00122 secA preprotein translocase subunit SecA; Validated
Probab=97.23 E-value=0.0084 Score=72.08 Aligned_cols=96 Identities=24% Similarity=0.242 Sum_probs=58.9
Q ss_pred hcCCCchhhHHHHHHHHHcCCeEEEEecCCCCcccc--HHHHHHHhccCCCCCCCCCceEEEecccHHHHHHHHHHHHHH
Q 038192 31 RKDLPIVMMEQEIMEAVNDNSAVIICGETGCGKTTQ--VPQFLFEAGFGSNRCSSRSGRIGVTQPRRVAVLATAKRVAFE 108 (764)
Q Consensus 31 R~~LPi~~~~~~Il~~l~~~~vviI~GeTGSGKTTq--vPq~Lle~~~~~~~~~~~~~~Ii~tQPRRiaAisvA~RVa~E 108 (764)
++.|=...+--+++-++.-++--|..-.||.|||.. +|-++ +++... +--+|| +.+.+ |+|-++.
T Consensus 70 ~R~lG~r~ydvQlig~l~L~~G~IaEm~TGEGKTL~a~l~ayl--~aL~G~------~VhVvT-~NdyL----A~RD~e~ 136 (870)
T CHL00122 70 FRTLGLRHFDVQLIGGLVLNDGKIAEMKTGEGKTLVATLPAYL--NALTGK------GVHIVT-VNDYL----AKRDQEW 136 (870)
T ss_pred HHHhCCCCCchHhhhhHhhcCCccccccCCCCchHHHHHHHHH--HHhcCC------ceEEEe-CCHHH----HHHHHHH
Confidence 455666666667888777777778899999999975 45443 333221 223444 44443 4555555
Q ss_pred hC---CCCCCEeeEEeccCccc----CCCceEEEEchH
Q 038192 109 LG---LHLGKEVGFQVRHDKKI----GDSCSIKFMTDG 139 (764)
Q Consensus 109 ~g---~~lG~~VGY~ir~e~~~----s~~t~I~f~T~G 139 (764)
++ ..+|-+||.-+...+.. .=.+.|+|+|+.
T Consensus 137 m~pvy~~LGLsvg~i~~~~~~~err~aY~~DItYgTn~ 174 (870)
T CHL00122 137 MGQIYRFLGLTVGLIQEGMSSEERKKNYLKDITYVTNS 174 (870)
T ss_pred HHHHHHHcCCceeeeCCCCChHHHHHhcCCCCEecCCc
Confidence 54 36788888754432211 124689999995
No 134
>KOG4150 consensus Predicted ATP-dependent RNA helicase [RNA processing and modification]
Probab=97.16 E-value=0.00028 Score=78.95 Aligned_cols=70 Identities=26% Similarity=0.235 Sum_probs=63.3
Q ss_pred EEecCCCCCHHHHHhhhccCCCCceEEEEecCcccccCCCCCeEEEEeCCcccceeeccCCCccccceeeccHHhHHHhc
Q 038192 439 VLPLYAMLPAAAQLRVFEDVKEGERLVVVSTNVAETSLTIPGIKYVVDTGREKVKKYNSANGIESYEIQWISKASAAQRA 518 (764)
Q Consensus 439 i~pLHs~l~~~eQ~~vf~~~~~g~rKVIlsTNIAEtSITIpdV~~VID~G~~K~~~yd~~~~~~~l~~~~iSkasa~QR~ 518 (764)
|..+.|+...++|+++-...-.|.-+-|+|||..|-||+|-....|+-+|+ |-|-||..|..
T Consensus 560 i~SYRGGY~A~DRRKIE~~~F~G~L~giIaTNALELGIDIG~LDAVl~~GF------------------P~S~aNl~QQ~ 621 (1034)
T KOG4150|consen 560 ITSYRGGYIAEDRRKIESDLFGGKLCGIIATNALELGIDIGHLDAVLHLGF------------------PGSIANLWQQA 621 (1034)
T ss_pred HHhhcCccchhhHHHHHHHhhCCeeeEEEecchhhhccccccceeEEEccC------------------chhHHHHHHHh
Confidence 556779999999999988877899999999999999999999999999997 56889999999
Q ss_pred cccCCCCC
Q 038192 519 GRAGRTAP 526 (764)
Q Consensus 519 GRAGR~~~ 526 (764)
|||||-..
T Consensus 622 GRAGRRNk 629 (1034)
T KOG4150|consen 622 GRAGRRNK 629 (1034)
T ss_pred ccccccCC
Confidence 99998654
No 135
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=96.84 E-value=0.0076 Score=72.19 Aligned_cols=98 Identities=23% Similarity=0.282 Sum_probs=60.4
Q ss_pred hhcCCCchhhHHHHHHHHHcCCeEEEEecCCCCcccc--HHHHHHHhccCCCCCCCCCceEEEecccHHHHHHHHHHHHH
Q 038192 30 NRKDLPIVMMEQEIMEAVNDNSAVIICGETGCGKTTQ--VPQFLFEAGFGSNRCSSRSGRIGVTQPRRVAVLATAKRVAF 107 (764)
Q Consensus 30 ~R~~LPi~~~~~~Il~~l~~~~vviI~GeTGSGKTTq--vPq~Lle~~~~~~~~~~~~~~Ii~tQPRRiaAisvA~RVa~ 107 (764)
.++.|-...+--+++-.+.-++--|..=.||=|||.. +|-|| +++... +--+||--- .+|+|=|+
T Consensus 71 ~~R~lG~r~ydVQliGglvLh~G~IAEMkTGEGKTLvAtLpayL--nAL~Gk------gVhVVTvNd-----YLA~RDae 137 (925)
T PRK12903 71 TKRVLGKRPYDVQIIGGIILDLGSVAEMKTGEGKTITSIAPVYL--NALTGK------GVIVSTVNE-----YLAERDAE 137 (925)
T ss_pred HHHHhCCCcCchHHHHHHHHhcCCeeeecCCCCccHHHHHHHHH--HHhcCC------ceEEEecch-----hhhhhhHH
Confidence 3455666666667777766566567778899999954 45554 333322 234456433 45677777
Q ss_pred HhCC---CCCCEeeEEeccCcc----cCCCceEEEEchHH
Q 038192 108 ELGL---HLGKEVGFQVRHDKK----IGDSCSIKFMTDGI 140 (764)
Q Consensus 108 E~g~---~lG~~VGY~ir~e~~----~s~~t~I~f~T~Gi 140 (764)
+||. -+|-+||..+...+. ..=.+.|+|+|+.=
T Consensus 138 ~mg~vy~fLGLsvG~i~~~~~~~~rr~aY~~DItYgTn~E 177 (925)
T PRK12903 138 EMGKVFNFLGLSVGINKANMDPNLKREAYACDITYSVHSE 177 (925)
T ss_pred HHHHHHHHhCCceeeeCCCCChHHHHHhccCCCeeecCcc
Confidence 7764 578888876543221 11257899999963
No 136
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=96.59 E-value=0.0028 Score=64.81 Aligned_cols=68 Identities=24% Similarity=0.327 Sum_probs=44.5
Q ss_pred HHHHHHHHHcCC-eEEEEecCCCCccccHHHHHHHhccC-CCCCCCCCceEEEecccHHHHHHHHHHHHH
Q 038192 40 EQEIMEAVNDNS-AVIICGETGCGKTTQVPQFLFEAGFG-SNRCSSRSGRIGVTQPRRVAVLATAKRVAF 107 (764)
Q Consensus 40 ~~~Il~~l~~~~-vviI~GeTGSGKTTqvPq~Lle~~~~-~~~~~~~~~~Ii~tQPRRiaAisvA~RVa~ 107 (764)
|.+.+..+..+. +.+|.|++||||||.+...+...... .........+|+++-|+-.|+-.+.+++.+
T Consensus 6 Q~~Ai~~~~~~~~~~~i~GpPGTGKT~~l~~~i~~~~~~~~~~~~~~~~~il~~~~sN~avd~~~~~l~~ 75 (236)
T PF13086_consen 6 QREAIQSALSSNGITLIQGPPGTGKTTTLASIIAQLLQRFKSRSADRGKKILVVSPSNAAVDNILERLKK 75 (236)
T ss_dssp HHHHHHHHCTSSE-EEEE-STTSSHHHHHHHHHHHH-------HCCCSS-EEEEESSHHHHHHHHHHHHC
T ss_pred HHHHHHHHHcCCCCEEEECCCCCChHHHHHHHHHHhccchhhhhhhccccceeecCCchhHHHHHHHHHh
Confidence 344445555555 59999999999999888877665100 000001236899999999999999999877
No 137
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=96.42 E-value=0.0037 Score=63.40 Aligned_cols=116 Identities=22% Similarity=0.268 Sum_probs=71.2
Q ss_pred CeEEEEecCCCCccccHHHHHHHhccCCCCCCCCCceEEEecccHHHHHHHHHHHHHHhCCCCCCEeeEEeccCcc----
Q 038192 51 SAVIICGETGCGKTTQVPQFLFEAGFGSNRCSSRSGRIGVTQPRRVAVLATAKRVAFELGLHLGKEVGFQVRHDKK---- 126 (764)
Q Consensus 51 ~vviI~GeTGSGKTTqvPq~Lle~~~~~~~~~~~~~~Ii~tQPRRiaAisvA~RVa~E~g~~lG~~VGY~ir~e~~---- 126 (764)
+|+++.|+||+||||.+...-......+. ...++++-.-|++|+.--+..|+.+|.++ |..+.++.
T Consensus 2 ~vi~lvGptGvGKTTt~aKLAa~~~~~~~-----~v~lis~D~~R~ga~eQL~~~a~~l~vp~-----~~~~~~~~~~~~ 71 (196)
T PF00448_consen 2 KVIALVGPTGVGKTTTIAKLAARLKLKGK-----KVALISADTYRIGAVEQLKTYAEILGVPF-----YVARTESDPAEI 71 (196)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHHTT-------EEEEEESTSSTHHHHHHHHHHHHHTEEE-----EESSTTSCHHHH
T ss_pred EEEEEECCCCCchHhHHHHHHHHHhhccc-----cceeecCCCCCccHHHHHHHHHHHhcccc-----chhhcchhhHHH
Confidence 47889999999999998886655433322 36889999999999999999999987542 22222210
Q ss_pred -------c--CCCceEEEEchHHHHHHHHHHHHHHHHHHhhccccCCccCCCCceEEEeecccchhhh
Q 038192 127 -------I--GDSCSIKFMTDGILLRELKALYEKQQQLLRSGQCIEPKDRVFPLKLILMSATLRVEDF 185 (764)
Q Consensus 127 -------~--s~~t~I~f~T~GiLLr~l~~i~de~~~~l~~~~~~~~~~~~~~lKlILMSATl~~~~f 185 (764)
. ...--|++=|+|+..+.-. ..+|....+.. ..++-.+++||||+..+.+
T Consensus 72 ~~~~l~~~~~~~~D~vlIDT~Gr~~~d~~-~~~el~~~~~~--------~~~~~~~LVlsa~~~~~~~ 130 (196)
T PF00448_consen 72 AREALEKFRKKGYDLVLIDTAGRSPRDEE-LLEELKKLLEA--------LNPDEVHLVLSATMGQEDL 130 (196)
T ss_dssp HHHHHHHHHHTTSSEEEEEE-SSSSTHHH-HHHHHHHHHHH--------HSSSEEEEEEEGGGGGHHH
T ss_pred HHHHHHHHhhcCCCEEEEecCCcchhhHH-HHHHHHHHhhh--------cCCccceEEEecccChHHH
Confidence 0 1123577778887654211 11111111111 1256678899999965543
No 138
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=96.34 E-value=0.02 Score=69.39 Aligned_cols=78 Identities=23% Similarity=0.282 Sum_probs=47.0
Q ss_pred eEEEeeccc--chhhhccccCCCCCCCeeeeCCcc------cceeEEecCCCchhhHHHHHHHHHHHHhhcCCCCCeEEe
Q 038192 172 KLILMSATL--RVEDFISGGRLFRNPPIIEVPTRQ------FPVTVHFSKRTEIVDYIGQAYKKVMSIHKRLPQGGILVF 243 (764)
Q Consensus 172 KlILMSATl--~~~~f~~~~~~f~~~~vi~i~gr~------~pV~~~y~~~~~~~d~l~~~~~~v~~i~~~~~~g~ilvF 243 (764)
|+.-|+.|. ..+.|. +.+ +.+++.||... +|-.+ |.. ......+..+.+...|... .-+||-
T Consensus 505 kl~GmTGTa~~e~~Ef~---~iY-~l~v~~iPt~kp~~r~d~~d~i-y~t---~~~k~~ai~~ei~~~~~~g--rPvLig 574 (970)
T PRK12899 505 KLAGMTGTAITESREFK---EIY-NLYVLQVPTFKPCLRIDHNDEF-YMT---EREKYHAIVAEIASIHRKG--NPILIG 574 (970)
T ss_pred hhcccCCCCHHHHHHHH---HHh-CCCEEECCCCCCceeeeCCCcE-ecC---HHHHHHHHHHHHHHHHhCC--CCEEEE
Confidence 788899998 334454 244 35788887632 23233 221 1344455566667777532 348888
Q ss_pred cCCHHHHHHHHHHHHH
Q 038192 244 VTGQREVEYLCSKLRK 259 (764)
Q Consensus 244 ~~g~~~ie~l~~~L~~ 259 (764)
+.+-+..|.+...|.+
T Consensus 575 t~si~~se~ls~~L~~ 590 (970)
T PRK12899 575 TESVEVSEKLSRILRQ 590 (970)
T ss_pred eCcHHHHHHHHHHHHH
Confidence 8887777777776654
No 139
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=96.33 E-value=0.029 Score=69.46 Aligned_cols=114 Identities=13% Similarity=0.135 Sum_probs=64.4
Q ss_pred HHHhhhccCCCCceEEEEecCcccccCCCCCeE--EEEeCCcccceeeccC----------CCccccceeeccHH--hHH
Q 038192 450 AQLRVFEDVKEGERLVVVSTNVAETSLTIPGIK--YVVDTGREKVKKYNSA----------NGIESYEIQWISKA--SAA 515 (764)
Q Consensus 450 eQ~~vf~~~~~g~rKVIlsTNIAEtSITIpdV~--~VID~G~~K~~~yd~~----------~~~~~l~~~~iSka--sa~ 515 (764)
++.++++.|..|...|+++|+....||++|+.. .||=.|++-..--||. .+-+.+...-..+| -.+
T Consensus 713 ~r~~ll~~F~~~~~~iLlgt~sf~EGVD~~g~~l~~viI~~LPf~~p~dp~~~a~~~~~~~~g~~~f~~~~lP~A~~~l~ 792 (850)
T TIGR01407 713 SRAKIKKRFNNGEKAILLGTSSFWEGVDFPGNGLVCLVIPRLPFANPKHPLTKKYWQKLEQEGKNPFYDYVLPMAIIRLR 792 (850)
T ss_pred cHHHHHHHHHhCCCeEEEEcceeecccccCCCceEEEEEeCCCCCCCCCHHHHHHHHHHHHhcCCchHHhhHHHHHHHHH
Confidence 445566677778889999999999999999765 5555676643211111 11111111112233 377
Q ss_pred HhccccCCCCC--CEEEEc----cCHHHhcccCCCCCC--CcccccChhhHHHHHHH
Q 038192 516 QRAGRAGRTAP--GHCYRL----YSSAVFNNILPDFSC--AEISKVPVDGVVLLMKS 564 (764)
Q Consensus 516 QR~GRAGR~~~--G~cyrL----ys~~~~~~~l~~~~~--PEI~r~~L~~~~L~lk~ 564 (764)
|-.||.=|... |..+-| .++ .|...+...-+ +-+...+++++.-.++.
T Consensus 793 Qa~GRlIRs~~D~G~v~ilD~R~~~~-~Yg~~~~~sLp~~~~~~~~~~~~~~~~~~~ 848 (850)
T TIGR01407 793 QALGRLIRRENDRGSIVILDRRLVGK-RYGKRFEKSLPEYLQVKGDILGELLEAIKE 848 (850)
T ss_pred HhhccccccCCceEEEEEEccccccc-hHHHHHHHhCCCccccccCCHHHHHHHHHh
Confidence 88999999875 776633 332 23222221111 22444567777665553
No 140
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=96.23 E-value=0.0065 Score=75.31 Aligned_cols=86 Identities=12% Similarity=0.130 Sum_probs=67.2
Q ss_pred CeEEEecCCCCCHHHHHhhhccCCC---CceEEEEecCcccccCCCCCeEEEEeCCcccceeeccCCCccccceeeccHH
Q 038192 436 ALCVLPLYAMLPAAAQLRVFEDVKE---GERLVVVSTNVAETSLTIPGIKYVVDTGREKVKKYNSANGIESYEIQWISKA 512 (764)
Q Consensus 436 ~~~i~pLHs~l~~~eQ~~vf~~~~~---g~rKVIlsTNIAEtSITIpdV~~VID~G~~K~~~yd~~~~~~~l~~~~iSka 512 (764)
++....+||+++..+|..+.+.|.. +..-++|||..+..||++....+||. ||+.-+ -+
T Consensus 511 g~~y~rIdGsts~~eRq~~Id~Fn~~~s~~~VfLLSTrAGGlGINLt~Ad~VIi--------yD~dWN----------P~ 572 (1033)
T PLN03142 511 GYQYCRIDGNTGGEDRDASIDAFNKPGSEKFVFLLSTRAGGLGINLATADIVIL--------YDSDWN----------PQ 572 (1033)
T ss_pred CCcEEEECCCCCHHHHHHHHHHhccccCCceEEEEeccccccCCchhhCCEEEE--------eCCCCC----------hH
Confidence 4567889999999999998888843 34567899999999999999999995 665533 34
Q ss_pred hHHHhccccCCCCC---CEEEEccCHHHhc
Q 038192 513 SAAQRAGRAGRTAP---GHCYRLYSSAVFN 539 (764)
Q Consensus 513 sa~QR~GRAGR~~~---G~cyrLys~~~~~ 539 (764)
.-.|+.|||-|-|. =.+|||++....+
T Consensus 573 ~d~QAidRaHRIGQkk~V~VyRLIt~gTIE 602 (1033)
T PLN03142 573 VDLQAQDRAHRIGQKKEVQVFRFCTEYTIE 602 (1033)
T ss_pred HHHHHHHHhhhcCCCceEEEEEEEeCCcHH
Confidence 44588888877665 4699999986654
No 141
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=96.20 E-value=0.066 Score=60.65 Aligned_cols=82 Identities=24% Similarity=0.305 Sum_probs=68.5
Q ss_pred CeEEEecCCCCCHHHHHhhhccCCCCceEEEEecCcccccCCCCCeEEEEeCCcccceeeccCCCccccceeeccHHhHH
Q 038192 436 ALCVLPLYAMLPAAAQLRVFEDVKEGERLVVVSTNVAETSLTIPGIKYVVDTGREKVKKYNSANGIESYEIQWISKASAA 515 (764)
Q Consensus 436 ~~~i~pLHs~l~~~eQ~~vf~~~~~g~rKVIlsTNIAEtSITIpdV~~VID~G~~K~~~yd~~~~~~~l~~~~iSkasa~ 515 (764)
++++--|||.+..-||..+....+.|.-.|+|--|..--||+||.|..|.= .|... .-..=|-.|..
T Consensus 470 gikv~YlHSdidTlER~eIirdLR~G~~DvLVGINLLREGLDiPEVsLVAI--------lDADK-----eGFLRse~SLI 536 (663)
T COG0556 470 GIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGINLLREGLDLPEVSLVAI--------LDADK-----EGFLRSERSLI 536 (663)
T ss_pred CceEEeeeccchHHHHHHHHHHHhcCCccEEEeehhhhccCCCcceeEEEE--------eecCc-----cccccccchHH
Confidence 578999999999999999999999999999999999999999999998872 22211 00123556778
Q ss_pred HhccccCCCCCCEEE
Q 038192 516 QRAGRAGRTAPGHCY 530 (764)
Q Consensus 516 QR~GRAGR~~~G~cy 530 (764)
|=.|||.|.-.|.++
T Consensus 537 QtIGRAARN~~GkvI 551 (663)
T COG0556 537 QTIGRAARNVNGKVI 551 (663)
T ss_pred HHHHHHhhccCCeEE
Confidence 999999999999876
No 142
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.08 E-value=0.0033 Score=70.37 Aligned_cols=132 Identities=21% Similarity=0.234 Sum_probs=73.0
Q ss_pred CCeEEEEecCCCCccccHHHHHHHhccCCCCCCCCCceEEEecccHHHHHHHHHHHHHHhCCCCCCEeeEEe-ccCc--c
Q 038192 50 NSAVIICGETGCGKTTQVPQFLFEAGFGSNRCSSRSGRIGVTQPRRVAVLATAKRVAFELGLHLGKEVGFQV-RHDK--K 126 (764)
Q Consensus 50 ~~vviI~GeTGSGKTTqvPq~Lle~~~~~~~~~~~~~~Ii~tQPRRiaAisvA~RVa~E~g~~lG~~VGY~i-r~e~--~ 126 (764)
..+++++|+|||||||+.-++........+ ....++-+-+-|.+|....++.|..+|.++-. + ..+ .... .
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~~~~~G----~~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~~-~-~~~~~l~~~l~ 296 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKYFLHMG----KSVSLYTTDNYRIAAIEQLKRYADTMGMPFYP-V-KDIKKFKETLA 296 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHhcC----CeEEEecccchhhhHHHHHHHHHHhcCCCeee-h-HHHHHHHHHHH
Confidence 467889999999999999998765422211 12567788899999999888888877654310 0 000 0000 0
Q ss_pred cCCCceEEEEchHHHHHHHHHHHHHHHHHHhhccccCCccCCCCceEEEeecccchhhhccccCCCC
Q 038192 127 IGDSCSIKFMTDGILLRELKALYEKQQQLLRSGQCIEPKDRVFPLKLILMSATLRVEDFISGGRLFR 193 (764)
Q Consensus 127 ~s~~t~I~f~T~GiLLr~l~~i~de~~~~l~~~~~~~~~~~~~~lKlILMSATl~~~~f~~~~~~f~ 193 (764)
.....-|++=|+|+.-+... -+++....+.. .....+.-.++++|||...+......++|.
T Consensus 297 ~~~~D~VLIDTaGr~~rd~~-~l~eL~~~~~~-----~~~~~~~e~~LVLsAt~~~~~~~~~~~~f~ 357 (432)
T PRK12724 297 RDGSELILIDTAGYSHRNLE-QLERMQSFYSC-----FGEKDSVENLLVLSSTSSYHHTLTVLKAYE 357 (432)
T ss_pred hCCCCEEEEeCCCCCccCHH-HHHHHHHHHHh-----hcCCCCCeEEEEEeCCCCHHHHHHHHHHhc
Confidence 11223477888887644221 11111111110 000113456788999995543332214554
No 143
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=95.90 E-value=0.014 Score=69.60 Aligned_cols=64 Identities=23% Similarity=0.284 Sum_probs=49.5
Q ss_pred hhHHHHHHHHHcCCeEEEEecCCCCccccHHHHHHHhccCCCCCCCCCceEEEecccHHHHHHHHHHHHHH
Q 038192 38 MMEQEIMEAVNDNSAVIICGETGCGKTTQVPQFLFEAGFGSNRCSSRSGRIGVTQPRRVAVLATAKRVAFE 108 (764)
Q Consensus 38 ~~~~~Il~~l~~~~vviI~GeTGSGKTTqvPq~Lle~~~~~~~~~~~~~~Ii~tQPRRiaAisvA~RVa~E 108 (764)
.++..+..++...++++|.|++||||||.+-..+.+.... + .+|+|+-|+..||-.+.+|+...
T Consensus 161 ~Q~~Av~~~l~~~~~~lI~GpPGTGKT~t~~~ii~~~~~~-g------~~VLv~a~sn~Avd~l~e~l~~~ 224 (637)
T TIGR00376 161 SQKEAVSFALSSKDLFLIHGPPGTGKTRTLVELIRQLVKR-G------LRVLVTAPSNIAVDNLLERLALC 224 (637)
T ss_pred HHHHHHHHHhcCCCeEEEEcCCCCCHHHHHHHHHHHHHHc-C------CCEEEEcCcHHHHHHHHHHHHhC
Confidence 4445555556555899999999999999888777654321 1 37999999999999999999764
No 144
>PF05729 NACHT: NACHT domain
Probab=95.87 E-value=0.011 Score=57.12 Aligned_cols=25 Identities=28% Similarity=0.465 Sum_probs=20.7
Q ss_pred CeEEEEecCCCCccccHHHHHHHhc
Q 038192 51 SAVIICGETGCGKTTQVPQFLFEAG 75 (764)
Q Consensus 51 ~vviI~GeTGSGKTTqvPq~Lle~~ 75 (764)
++++|+|++||||||.+-.++.+..
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~ 25 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLA 25 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHH
Confidence 5799999999999999877766543
No 145
>PRK10536 hypothetical protein; Provisional
Probab=95.86 E-value=0.013 Score=61.46 Aligned_cols=57 Identities=28% Similarity=0.337 Sum_probs=44.9
Q ss_pred CCchhhHHHHHHHHHcCCeEEEEecCCCCccccHHHHHHHhccCCCCCCCCCceEEEecccH
Q 038192 34 LPIVMMEQEIMEAVNDNSAVIICGETGCGKTTQVPQFLFEAGFGSNRCSSRSGRIGVTQPRR 95 (764)
Q Consensus 34 LPi~~~~~~Il~~l~~~~vviI~GeTGSGKTTqvPq~Lle~~~~~~~~~~~~~~Ii~tQPRR 95 (764)
-|....+...+.++.++++|++.|++|||||+..-.+.++....+. ..+|+++-|.-
T Consensus 58 ~p~n~~Q~~~l~al~~~~lV~i~G~aGTGKT~La~a~a~~~l~~~~-----~~kIiI~RP~v 114 (262)
T PRK10536 58 LARNEAQAHYLKAIESKQLIFATGEAGCGKTWISAAKAAEALIHKD-----VDRIIVTRPVL 114 (262)
T ss_pred cCCCHHHHHHHHHHhcCCeEEEECCCCCCHHHHHHHHHHHHHhcCC-----eeEEEEeCCCC
Confidence 5677788889999999999999999999999887776665432221 25899998873
No 146
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=95.81 E-value=0.015 Score=62.57 Aligned_cols=65 Identities=22% Similarity=0.215 Sum_probs=46.8
Q ss_pred hHHHHHHHHHcCCeEEEEecCCCCccccHHHH---HHHhccCCCCCCCCCceEEEecccHHHHHHHHHHHHHHhCC
Q 038192 39 MEQEIMEAVNDNSAVIICGETGCGKTTQVPQF---LFEAGFGSNRCSSRSGRIGVTQPRRVAVLATAKRVAFELGL 111 (764)
Q Consensus 39 ~~~~Il~~l~~~~vviI~GeTGSGKTTqvPq~---Lle~~~~~~~~~~~~~~Ii~tQPRRiaAisvA~RVa~E~g~ 111 (764)
.+.+++.. .+..++|.|..||||||.+-.- ++..... .+.+|+|+-+++-||..+.+|+....+.
T Consensus 4 eQ~~~i~~--~~~~~lV~a~AGSGKT~~l~~ri~~ll~~~~~------~~~~Il~lTft~~aa~e~~~ri~~~l~~ 71 (315)
T PF00580_consen 4 EQRRIIRS--TEGPLLVNAGAGSGKTTTLLERIAYLLYEGGV------PPERILVLTFTNAAAQEMRERIRELLEE 71 (315)
T ss_dssp HHHHHHHS---SSEEEEEE-TTSSHHHHHHHHHHHHHHTSSS------TGGGEEEEESSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhC--CCCCEEEEeCCCCCchHHHHHHHHHhhccccC------ChHHheecccCHHHHHHHHHHHHHhcCc
Confidence 45566666 4566888899999999976653 3443311 2458999999999999999999886543
No 147
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=95.76 E-value=0.049 Score=66.01 Aligned_cols=103 Identities=14% Similarity=0.121 Sum_probs=65.8
Q ss_pred hcCCCchhhHHHHHHHHHcCCeEEEEecCCCCccccHHHHHHHhccCCCCCCCCCceEEEecccHHHHHHHHHHHHHHhC
Q 038192 31 RKDLPIVMMEQEIMEAVNDNSAVIICGETGCGKTTQVPQFLFEAGFGSNRCSSRSGRIGVTQPRRVAVLATAKRVAFELG 110 (764)
Q Consensus 31 R~~LPi~~~~~~Il~~l~~~~vviI~GeTGSGKTTqvPq~Lle~~~~~~~~~~~~~~Ii~tQPRRiaAisvA~RVa~E~g 110 (764)
|+.|-...+--+++-.+.-++--|..=.||+|||.......+-.+... ..+.+.-|...+|..=++.+..-.
T Consensus 76 ~R~lGm~~ydVQliGg~~Lh~G~iaEM~TGEGKTLvA~l~a~l~al~G-------~~VhvvT~ndyLA~RD~e~m~~l~- 147 (913)
T PRK13103 76 KRVMGMRHFDVQLIGGMTLHEGKIAEMRTGEGKTLVGTLAVYLNALSG-------KGVHVVTVNDYLARRDANWMRPLY- 147 (913)
T ss_pred HHHhCCCcchhHHHhhhHhccCccccccCCCCChHHHHHHHHHHHHcC-------CCEEEEeCCHHHHHHHHHHHHHHh-
Confidence 445555555566776665565567777899999975443333333332 246667899998888777665544
Q ss_pred CCCCCEeeEEeccCccc----CCCceEEEEchHHH
Q 038192 111 LHLGKEVGFQVRHDKKI----GDSCSIKFMTDGIL 141 (764)
Q Consensus 111 ~~lG~~VGY~ir~e~~~----s~~t~I~f~T~GiL 141 (764)
+.+|-+||.-....+.. .=.++|+|+|+.-|
T Consensus 148 ~~lGl~v~~i~~~~~~~err~~Y~~dI~YGT~~e~ 182 (913)
T PRK13103 148 EFLGLSVGIVTPFQPPEEKRAAYAADITYGTNNEF 182 (913)
T ss_pred cccCCEEEEECCCCCHHHHHHHhcCCEEEEccccc
Confidence 35788888754322111 11488999999986
No 148
>KOG1803 consensus DNA helicase [Replication, recombination and repair]
Probab=95.75 E-value=0.02 Score=65.59 Aligned_cols=61 Identities=25% Similarity=0.314 Sum_probs=47.0
Q ss_pred hHHHHHHHHHcC-CeEEEEecCCCCccccHHHHHHHhccCCCCCCCCCceEEEecccHHHHHHHHHHHH
Q 038192 39 MEQEIMEAVNDN-SAVIICGETGCGKTTQVPQFLFEAGFGSNRCSSRSGRIGVTQPRRVAVLATAKRVA 106 (764)
Q Consensus 39 ~~~~Il~~l~~~-~vviI~GeTGSGKTTqvPq~Lle~~~~~~~~~~~~~~Ii~tQPRRiaAisvA~RVa 106 (764)
.|.+.+.+..++ .+.+|.|++|+|||+-+--.|......+ .+|+|+-|+.+|.-.+-+|+.
T Consensus 189 SQk~Av~~~~~~k~l~~I~GPPGTGKT~TlvEiI~qlvk~~-------k~VLVcaPSn~AVdNiverl~ 250 (649)
T KOG1803|consen 189 SQKAAVSFAINNKDLLIIHGPPGTGKTRTLVEIISQLVKQK-------KRVLVCAPSNVAVDNIVERLT 250 (649)
T ss_pred HHHHHHHHHhccCCceEeeCCCCCCceeeHHHHHHHHHHcC-------CeEEEEcCchHHHHHHHHHhc
Confidence 344445554444 7889999999999998887777654332 489999999999999888876
No 149
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=95.51 E-value=0.038 Score=65.45 Aligned_cols=60 Identities=12% Similarity=0.077 Sum_probs=47.5
Q ss_pred HHHHHHHHHcCCeEEEEecCCCCccccHHHHHHHhccCCCCCCCCCceEEEecccHHHHHHHHHH
Q 038192 40 EQEIMEAVNDNSAVIICGETGCGKTTQVPQFLFEAGFGSNRCSSRSGRIGVTQPRRVAVLATAKR 104 (764)
Q Consensus 40 ~~~Il~~l~~~~vviI~GeTGSGKTTqvPq~Lle~~~~~~~~~~~~~~Ii~tQPRRiaAisvA~R 104 (764)
-+.|.+++.+++++++.++||+|||-......+....... ..+++|+-|++..+.|+.+.
T Consensus 6 ~~~i~~al~~~~~lliEA~TGtGKTlAYLlpal~~~~~~~-----~~rvlIstpT~~Lq~Ql~~~ 65 (636)
T TIGR03117 6 YLNCLTSLRQKRIGMLEASTGVGKTLAMIMAALTMLKERP-----DQKIAIAVPTLALMGQLWSE 65 (636)
T ss_pred HHHHHHHHhcCCeEEEEcCCCCcHHHHHHHHHHHHHHhcc-----CceEEEECCcHHHHHHHHHH
Confidence 4678889999999999999999999876666655433211 15899999999999999873
No 150
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=95.46 E-value=0.071 Score=65.17 Aligned_cols=54 Identities=30% Similarity=0.374 Sum_probs=39.7
Q ss_pred EEEEecCcccccCCCC--------CeEEEEeCCcccceeeccCCCccccceeeccHHhHHHhccccCCCCC-CEEEEccC
Q 038192 464 LVVVSTNVAETSLTIP--------GIKYVVDTGREKVKKYNSANGIESYEIQWISKASAAQRAGRAGRTAP-GHCYRLYS 534 (764)
Q Consensus 464 KVIlsTNIAEtSITIp--------dV~~VID~G~~K~~~yd~~~~~~~l~~~~iSkasa~QR~GRAGR~~~-G~cyrLys 534 (764)
.|-+|||.|-||-+|. +=-|||=+.++...+-| .|=+|||||.|. |.+--..|
T Consensus 678 aVTIATNMAGRGTDIkLg~~V~e~GGL~VIgTerheSrRID------------------~QLrGRaGRQGDPGsS~f~lS 739 (1112)
T PRK12901 678 TVTIATNMAGRGTDIKLSPEVKAAGGLAIIGTERHESRRVD------------------RQLRGRAGRQGDPGSSQFYVS 739 (1112)
T ss_pred cEEEeccCcCCCcCcccchhhHHcCCCEEEEccCCCcHHHH------------------HHHhcccccCCCCCcceEEEE
Confidence 5999999999999996 33578866665444433 589999999995 87654444
Q ss_pred H
Q 038192 535 S 535 (764)
Q Consensus 535 ~ 535 (764)
=
T Consensus 740 L 740 (1112)
T PRK12901 740 L 740 (1112)
T ss_pred c
Confidence 3
No 151
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=95.43 E-value=0.023 Score=57.93 Aligned_cols=55 Identities=25% Similarity=0.280 Sum_probs=36.1
Q ss_pred CchhhHHHHHHHHHcCCeEEEEecCCCCccccHHHHHHHhccCCCCCCCCCceEEEeccc
Q 038192 35 PIVMMEQEIMEAVNDNSAVIICGETGCGKTTQVPQFLFEAGFGSNRCSSRSGRIGVTQPR 94 (764)
Q Consensus 35 Pi~~~~~~Il~~l~~~~vviI~GeTGSGKTTqvPq~Lle~~~~~~~~~~~~~~Ii~tQPR 94 (764)
|....|...++++.++++|++.|+.|||||..--..=++....+ ...+|+++.|.
T Consensus 4 p~~~~Q~~~~~al~~~~~v~~~G~AGTGKT~LA~a~Al~~v~~g-----~~~kiii~Rp~ 58 (205)
T PF02562_consen 4 PKNEEQKFALDALLNNDLVIVNGPAGTGKTFLALAAALELVKEG-----EYDKIIITRPP 58 (205)
T ss_dssp --SHHHHHHHHHHHH-SEEEEE--TTSSTTHHHHHHHHHHHHTT-----S-SEEEEEE-S
T ss_pred CCCHHHHHHHHHHHhCCeEEEECCCCCcHHHHHHHHHHHHHHhC-----CCcEEEEEecC
Confidence 66678899999999999999999999999976544434332221 12589999776
No 152
>PRK14974 cell division protein FtsY; Provisional
Probab=95.08 E-value=0.039 Score=60.55 Aligned_cols=116 Identities=19% Similarity=0.220 Sum_probs=62.3
Q ss_pred CeEEEEecCCCCccccHHHHHHHhccCCCCCCCCCceEEEecccHHHHHHHHHHHHHHhCCCCCCEeeEE-----eccC-
Q 038192 51 SAVIICGETGCGKTTQVPQFLFEAGFGSNRCSSRSGRIGVTQPRRVAVLATAKRVAFELGLHLGKEVGFQ-----VRHD- 124 (764)
Q Consensus 51 ~vviI~GeTGSGKTTqvPq~Lle~~~~~~~~~~~~~~Ii~tQPRRiaAisvA~RVa~E~g~~lG~~VGY~-----ir~e- 124 (764)
.+++++|++|+||||.+-.+..... ..+. ..-++.+-+-|.+|+.-.+..+..+|.++-. ..|. +-++
T Consensus 141 ~vi~~~G~~GvGKTTtiakLA~~l~-~~g~----~V~li~~Dt~R~~a~eqL~~~a~~lgv~v~~-~~~g~dp~~v~~~a 214 (336)
T PRK14974 141 VVIVFVGVNGTGKTTTIAKLAYYLK-KNGF----SVVIAAGDTFRAGAIEQLEEHAERLGVKVIK-HKYGADPAAVAYDA 214 (336)
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHH-HcCC----eEEEecCCcCcHHHHHHHHHHHHHcCCceec-ccCCCCHHHHHHHH
Confidence 5888999999999997655432211 1111 1334455677888876667677777754311 0110 0001
Q ss_pred --c-ccCCCceEEEEchHHHHHHHHHHHHHHHHHHhhccccCCccCCCCceEEEeecccc
Q 038192 125 --K-KIGDSCSIKFMTDGILLRELKALYEKQQQLLRSGQCIEPKDRVFPLKLILMSATLR 181 (764)
Q Consensus 125 --~-~~s~~t~I~f~T~GiLLr~l~~i~de~~~~l~~~~~~~~~~~~~~lKlILMSATl~ 181 (764)
. ......-|++=|.|++-.... .++|...... ...|+..++++|||..
T Consensus 215 i~~~~~~~~DvVLIDTaGr~~~~~~-lm~eL~~i~~--------~~~pd~~iLVl~a~~g 265 (336)
T PRK14974 215 IEHAKARGIDVVLIDTAGRMHTDAN-LMDELKKIVR--------VTKPDLVIFVGDALAG 265 (336)
T ss_pred HHHHHhCCCCEEEEECCCccCCcHH-HHHHHHHHHH--------hhCCceEEEeeccccc
Confidence 0 111223588889988742111 1122111111 0137788999999884
No 153
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=95.07 E-value=0.022 Score=60.59 Aligned_cols=46 Identities=30% Similarity=0.369 Sum_probs=30.8
Q ss_pred HHHHHHcCCeEEEEecCCCCccccHHHHHHHhccCCCCCCCCCceEEEecccH
Q 038192 43 IMEAVNDNSAVIICGETGCGKTTQVPQFLFEAGFGSNRCSSRSGRIGVTQPRR 95 (764)
Q Consensus 43 Il~~l~~~~vviI~GeTGSGKTTqvPq~Lle~~~~~~~~~~~~~~Ii~tQPRR 95 (764)
+..+++.+..++|+|+|||||||++-.++ +..-.. ..+|++.+-..
T Consensus 120 l~~~v~~~~~ili~G~tGSGKTT~l~all-~~i~~~------~~~iv~iEd~~ 165 (270)
T PF00437_consen 120 LRSAVRGRGNILISGPTGSGKTTLLNALL-EEIPPE------DERIVTIEDPP 165 (270)
T ss_dssp HHHCHHTTEEEEEEESTTSSHHHHHHHHH-HHCHTT------TSEEEEEESSS
T ss_pred HhhccccceEEEEECCCccccchHHHHHh-hhcccc------ccceEEecccc
Confidence 33445667899999999999999996554 433221 14677766544
No 154
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=95.07 E-value=0.015 Score=54.09 Aligned_cols=66 Identities=23% Similarity=0.263 Sum_probs=40.4
Q ss_pred HcCCeEEEEecCCCCccccHHHHHHHhccCCCCCCCCCceEEEecccHHHHHHHHHHHHHHhCCCCC
Q 038192 48 NDNSAVIICGETGCGKTTQVPQFLFEAGFGSNRCSSRSGRIGVTQPRRVAVLATAKRVAFELGLHLG 114 (764)
Q Consensus 48 ~~~~vviI~GeTGSGKTTqvPq~Lle~~~~~~~~~~~~~~Ii~tQPRRiaAisvA~RVa~E~g~~lG 114 (764)
+++.+++|.|++|||||+.+-+++.+........ ....-+.+.-|......++++.++.+++....
T Consensus 2 ~~~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~ 67 (131)
T PF13401_consen 2 QSQRILVISGPPGSGKTTLIKRLARQLNAEAEIK-NHPDVIYVNCPSSRTPRDFAQEILEALGLPLK 67 (131)
T ss_dssp -----EEEEE-TTSSHHHHHHHHHHHHHHHHHHC-CCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSS
T ss_pred CCCcccEEEcCCCCCHHHHHHHHHHHhHHhhhcc-CCCcEEEEEeCCCCCHHHHHHHHHHHhCcccc
Confidence 4577899999999999999999887643100000 01134666766666778888999999886543
No 155
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=95.02 E-value=0.048 Score=67.00 Aligned_cols=65 Identities=20% Similarity=0.150 Sum_probs=47.6
Q ss_pred HHHHHHHcCCeEEEEecCCCCccccHHHHHHHhccCCCCCCCCCceEEEecccHHHHHHHHHHHHHHhCCCCC
Q 038192 42 EIMEAVNDNSAVIICGETGCGKTTQVPQFLFEAGFGSNRCSSRSGRIGVTQPRRVAVLATAKRVAFELGLHLG 114 (764)
Q Consensus 42 ~Il~~l~~~~vviI~GeTGSGKTTqvPq~Lle~~~~~~~~~~~~~~Ii~tQPRRiaAisvA~RVa~E~g~~lG 114 (764)
+|.+++.++..+++.++||||||...-..++... . .++++|+.|+|..+.|+..+....++..+|
T Consensus 256 ~V~~~l~~~~~~~~eA~tGtGKT~ayllp~l~~~--~------~~~vvI~t~T~~Lq~Ql~~~~i~~l~~~~~ 320 (820)
T PRK07246 256 LVGEDFHDGPASFIEAQTGIGKTYGYLLPLLAQS--D------QRQIIVSVPTKILQDQIMAEEVKAIQEVFH 320 (820)
T ss_pred HHHHHHhCCCcEEEECCCCCcHHHHHHHHHHHhc--C------CCcEEEEeCcHHHHHHHHHHHHHHHHHhcC
Confidence 5778888899999999999999997555555532 1 258999999999999995333333433333
No 156
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=94.95 E-value=1.3 Score=55.11 Aligned_cols=80 Identities=24% Similarity=0.221 Sum_probs=51.4
Q ss_pred CCCCCHHHHHhhhccCCCCceEEEEe-cCcccccCCCCCeEEEEeCCcccceeeccCCCccccceeeccHHhHHHhcccc
Q 038192 443 YAMLPAAAQLRVFEDVKEGERLVVVS-TNVAETSLTIPGIKYVVDTGREKVKKYNSANGIESYEIQWISKASAAQRAGRA 521 (764)
Q Consensus 443 Hs~l~~~eQ~~vf~~~~~g~rKVIls-TNIAEtSITIpdV~~VID~G~~K~~~yd~~~~~~~l~~~~iSkasa~QR~GRA 521 (764)
|-+|+..+|+-|-+-+..|...|.|. -+.-.+-. +.+.++|.++ ..||-..+ .+ ..-+-|...|..|+|
T Consensus 1412 ~e~~s~~d~~iv~~l~e~g~i~v~v~s~~~~~~~~-~~~lVvvmgt-----~~ydg~e~--~~--~~y~i~~ll~m~G~a 1481 (1674)
T KOG0951|consen 1412 HEGLSSNDQEIVQQLFEAGAIQVCVMSRDCYGTKL-KAHLVVVMGT-----QYYDGKEH--SY--EDYPIAELLQMVGLA 1481 (1674)
T ss_pred ccccCcchHHHHHHHHhcCcEEEEEEEcccccccc-cceEEEEecc-----eeeccccc--cc--ccCchhHHHHHhhhh
Confidence 88899999988888888888777654 33222111 2344444443 34764433 22 234568999999999
Q ss_pred CCCCCCEEEEccC
Q 038192 522 GRTAPGHCYRLYS 534 (764)
Q Consensus 522 GR~~~G~cyrLys 534 (764)
.| .|.|.-+..
T Consensus 1482 ~~--~~k~vi~~~ 1492 (1674)
T KOG0951|consen 1482 SG--AGKCVIMCH 1492 (1674)
T ss_pred cC--CccEEEEec
Confidence 98 677776654
No 157
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=94.83 E-value=0.034 Score=60.69 Aligned_cols=120 Identities=18% Similarity=0.164 Sum_probs=63.4
Q ss_pred CCeEEEEecCCCCccccHHHHHHHhccCCCCCCCCCceEEEecccHHHHHHHHHHHHHHhCCCCCCEee-EE-----ecc
Q 038192 50 NSAVIICGETGCGKTTQVPQFLFEAGFGSNRCSSRSGRIGVTQPRRVAVLATAKRVAFELGLHLGKEVG-FQ-----VRH 123 (764)
Q Consensus 50 ~~vviI~GeTGSGKTTqvPq~Lle~~~~~~~~~~~~~~Ii~tQPRRiaAisvA~RVa~E~g~~lG~~VG-Y~-----ir~ 123 (764)
..++.+.|++|+||||.+-..-........ ...++.+-+.|.+|+.-....+..++..+ ... +. +.+
T Consensus 114 ~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~-----~V~Li~~D~~r~~a~eql~~~a~~~~i~~--~~~~~~~dpa~~v~ 186 (318)
T PRK10416 114 PFVILVVGVNGVGKTTTIGKLAHKYKAQGK-----KVLLAAGDTFRAAAIEQLQVWGERVGVPV--IAQKEGADPASVAF 186 (318)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHhcCC-----eEEEEecCccchhhHHHHHHHHHHcCceE--EEeCCCCCHHHHHH
Confidence 468889999999999986654332211111 24455566778887766555666555321 000 00 001
Q ss_pred Cc----ccCCCceEEEEchHHHH------HHHHHHHHHHHHHHhhccccCCccCCCCceEEEeecccchhhh
Q 038192 124 DK----KIGDSCSIKFMTDGILL------RELKALYEKQQQLLRSGQCIEPKDRVFPLKLILMSATLRVEDF 185 (764)
Q Consensus 124 e~----~~s~~t~I~f~T~GiLL------r~l~~i~de~~~~l~~~~~~~~~~~~~~lKlILMSATl~~~~f 185 (764)
+. .....--|++=|+|++- ++|..+..-.+. .....|+-.+++++||...+.+
T Consensus 187 ~~l~~~~~~~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~---------~~~~~p~~~~LVl~a~~g~~~~ 249 (318)
T PRK10416 187 DAIQAAKARGIDVLIIDTAGRLHNKTNLMEELKKIKRVIKK---------ADPDAPHEVLLVLDATTGQNAL 249 (318)
T ss_pred HHHHHHHhCCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhh---------hcCCCCceEEEEEECCCChHHH
Confidence 11 11222357777888864 333332221111 0112366778999999844433
No 158
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=94.82 E-value=0.065 Score=63.53 Aligned_cols=67 Identities=21% Similarity=0.218 Sum_probs=46.7
Q ss_pred hhHHHHHHHHHcCCeEEEEecCCCCccccHHHHHHHhccCCCCCCCCCceEEEecccHHHHHHHHHHHHHH
Q 038192 38 MMEQEIMEAVNDNSAVIICGETGCGKTTQVPQFLFEAGFGSNRCSSRSGRIGVTQPRRVAVLATAKRVAFE 108 (764)
Q Consensus 38 ~~~~~Il~~l~~~~vviI~GeTGSGKTTqvPq~Lle~~~~~~~~~~~~~~Ii~tQPRRiaAisvA~RVa~E 108 (764)
.+|..+..++ .+++++|+|++||||||.+-.++........ ....+|.++-|+.-||..+.+++...
T Consensus 156 ~Qk~Av~~a~-~~~~~vItGgpGTGKTt~v~~ll~~l~~~~~---~~~~~i~l~APTgkAA~rL~e~~~~~ 222 (615)
T PRK10875 156 WQKVAAAVAL-TRRISVISGGPGTGKTTTVAKLLAALIQLAD---GERCRIRLAAPTGKAAARLTESLGKA 222 (615)
T ss_pred HHHHHHHHHh-cCCeEEEEeCCCCCHHHHHHHHHHHHHHhcC---CCCcEEEEECCcHHHHHHHHHHHHhh
Confidence 3444444444 5688999999999999998776643211000 11258999999999999888877653
No 159
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.69 E-value=0.035 Score=62.10 Aligned_cols=125 Identities=18% Similarity=0.147 Sum_probs=71.4
Q ss_pred CCeEEEEecCCCCccccHHHHHHHhccCCCCCCCCCceEEEecccHHHHHHHHHHHHHHhCCCCCCEeeEEe-ccC---c
Q 038192 50 NSAVIICGETGCGKTTQVPQFLFEAGFGSNRCSSRSGRIGVTQPRRVAVLATAKRVAFELGLHLGKEVGFQV-RHD---K 125 (764)
Q Consensus 50 ~~vviI~GeTGSGKTTqvPq~Lle~~~~~~~~~~~~~~Ii~tQPRRiaAisvA~RVa~E~g~~lG~~VGY~i-r~e---~ 125 (764)
..++++.|+||+||||.+-.+-......... .+....++.+-+-|++|..--+..++-+|.++ .+++.. .+. .
T Consensus 174 ~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~-~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv--~~~~~~~~l~~~L~ 250 (388)
T PRK12723 174 KRVFILVGPTGVGKTTTIAKLAAIYGINSDD-KSLNIKIITIDNYRIGAKKQIQTYGDIMGIPV--KAIESFKDLKEEIT 250 (388)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhhhcc-CCCeEEEEeccCccHHHHHHHHHHhhcCCcce--EeeCcHHHHHHHHH
Confidence 3588999999999999877654332111000 01236678888899999877777777666553 222211 000 1
Q ss_pred ccCCCceEEEEchHHHHHHHHHHHHHHHHHHhhccccCCccCCCC-ceEEEeecccchhhhc
Q 038192 126 KIGDSCSIKFMTDGILLRELKALYEKQQQLLRSGQCIEPKDRVFP-LKLILMSATLRVEDFI 186 (764)
Q Consensus 126 ~~s~~t~I~f~T~GiLLr~l~~i~de~~~~l~~~~~~~~~~~~~~-lKlILMSATl~~~~f~ 186 (764)
.....--|++=|.|++.+.+.. ++|....+... .++ -.++++|||...+.+.
T Consensus 251 ~~~~~DlVLIDTaGr~~~~~~~-l~el~~~l~~~--------~~~~e~~LVlsat~~~~~~~ 303 (388)
T PRK12723 251 QSKDFDLVLVDTIGKSPKDFMK-LAEMKELLNAC--------GRDAEFHLAVSSTTKTSDVK 303 (388)
T ss_pred HhCCCCEEEEcCCCCCccCHHH-HHHHHHHHHhc--------CCCCeEEEEEcCCCCHHHHH
Confidence 1223345777788887643321 33333332211 123 3678899999665554
No 160
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=94.40 E-value=0.082 Score=53.58 Aligned_cols=58 Identities=24% Similarity=0.298 Sum_probs=38.6
Q ss_pred HHHHHHHH-HcC-CeEEEEecCCCCccccHHHHHHHhccCCCCCCCCCceEEEecccHHHHHHHHHH
Q 038192 40 EQEIMEAV-NDN-SAVIICGETGCGKTTQVPQFLFEAGFGSNRCSSRSGRIGVTQPRRVAVLATAKR 104 (764)
Q Consensus 40 ~~~Il~~l-~~~-~vviI~GeTGSGKTTqvPq~Lle~~~~~~~~~~~~~~Ii~tQPRRiaAisvA~R 104 (764)
|.+.+..+ .++ ++++|+|+.||||||.+-. +.+.....+ .+|+++-|+.-||..++++
T Consensus 6 Q~~a~~~~l~~~~~~~~l~G~aGtGKT~~l~~-~~~~~~~~g------~~v~~~apT~~Aa~~L~~~ 65 (196)
T PF13604_consen 6 QREAVRAILTSGDRVSVLQGPAGTGKTTLLKA-LAEALEAAG------KRVIGLAPTNKAAKELREK 65 (196)
T ss_dssp HHHHHHHHHHCTCSEEEEEESTTSTHHHHHHH-HHHHHHHTT--------EEEEESSHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCeEEEEEECCCCCHHHHHHH-HHHHHHhCC------CeEEEECCcHHHHHHHHHh
Confidence 44455555 444 5899999999999997654 333221111 4799999999988877765
No 161
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=94.26 E-value=0.086 Score=59.54 Aligned_cols=124 Identities=18% Similarity=0.139 Sum_probs=69.6
Q ss_pred cCCeEEEEecCCCCccccHHHHHHHhccCCCCCCCCCceEEEecccHHHHHHHHHHHHHHhCCCCCCEeeEEec-c---C
Q 038192 49 DNSAVIICGETGCGKTTQVPQFLFEAGFGSNRCSSRSGRIGVTQPRRVAVLATAKRVAFELGLHLGKEVGFQVR-H---D 124 (764)
Q Consensus 49 ~~~vviI~GeTGSGKTTqvPq~Lle~~~~~~~~~~~~~~Ii~tQPRRiaAisvA~RVa~E~g~~lG~~VGY~ir-~---e 124 (764)
.+.++.+.|+||+||||.+-..........+ .....++.+-.-|+++..--...+.-+|.++ .+.+.-. + -
T Consensus 190 ~g~vi~lvGpnG~GKTTtlakLA~~~~~~~~---~~~v~~i~~d~~rigalEQL~~~a~ilGvp~--~~v~~~~dl~~al 264 (420)
T PRK14721 190 QGGVYALIGPTGVGKTTTTAKLAARAVIRHG---ADKVALLTTDSYRIGGHEQLRIYGKLLGVSV--RSIKDIADLQLML 264 (420)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcC---CCeEEEEecCCcchhHHHHHHHHHHHcCCce--ecCCCHHHHHHHH
Confidence 4678999999999999998765433211111 0124677788889999887777777776543 1112100 0 0
Q ss_pred cccCCCceEEEEchHHHHHHHHHHHHHHHHHHhhccccCCccCCCCceEEEeecccchhhhc
Q 038192 125 KKIGDSCSIKFMTDGILLRELKALYEKQQQLLRSGQCIEPKDRVFPLKLILMSATLRVEDFI 186 (764)
Q Consensus 125 ~~~s~~t~I~f~T~GiLLr~l~~i~de~~~~l~~~~~~~~~~~~~~lKlILMSATl~~~~f~ 186 (764)
......-.+++=|.|+.-+.- ...++... +.. . ..+.-.++++|||...+.+.
T Consensus 265 ~~l~~~d~VLIDTaGrsqrd~-~~~~~l~~-l~~-~------~~~~~~~LVl~at~~~~~~~ 317 (420)
T PRK14721 265 HELRGKHMVLIDTVGMSQRDQ-MLAEQIAM-LSQ-C------GTQVKHLLLLNATSSGDTLD 317 (420)
T ss_pred HHhcCCCEEEecCCCCCcchH-HHHHHHHH-Hhc-c------CCCceEEEEEcCCCCHHHHH
Confidence 012334568888999886521 12222222 111 0 01233567789998555443
No 162
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=94.09 E-value=0.092 Score=56.88 Aligned_cols=53 Identities=25% Similarity=0.344 Sum_probs=35.1
Q ss_pred hHHHHHHHHHcCCeEEEEecCCCCccccHHHHHHHhccCCCCCCCCCceEEEecccHH
Q 038192 39 MEQEIMEAVNDNSAVIICGETGCGKTTQVPQFLFEAGFGSNRCSSRSGRIGVTQPRRV 96 (764)
Q Consensus 39 ~~~~Il~~l~~~~vviI~GeTGSGKTTqvPq~Lle~~~~~~~~~~~~~~Ii~tQPRRi 96 (764)
..+.+..+++.+..++|+|+|||||||.+-..+ +...... ...+|++.+-.+.
T Consensus 121 ~~~~L~~~v~~~~~ilI~G~tGSGKTTll~al~-~~i~~~~----~~~ri~tiEd~~E 173 (299)
T TIGR02782 121 QRDVLREAVLARKNILVVGGTGSGKTTLANALL-AEIAKND----PTDRVVIIEDTRE 173 (299)
T ss_pred HHHHHHHHHHcCCeEEEECCCCCCHHHHHHHHH-HHhhccC----CCceEEEECCchh
Confidence 345566778888899999999999999875443 3221100 0147777776655
No 163
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=94.04 E-value=0.12 Score=61.21 Aligned_cols=65 Identities=22% Similarity=0.253 Sum_probs=45.9
Q ss_pred HHHHHHHHHcCCeEEEEecCCCCccccHHHHHHHh--ccCCCCCCCCCceEEEecccHHHHHHHHHHHHHH
Q 038192 40 EQEIMEAVNDNSAVIICGETGCGKTTQVPQFLFEA--GFGSNRCSSRSGRIGVTQPRRVAVLATAKRVAFE 108 (764)
Q Consensus 40 ~~~Il~~l~~~~vviI~GeTGSGKTTqvPq~Lle~--~~~~~~~~~~~~~Ii~tQPRRiaAisvA~RVa~E 108 (764)
++..+.....+++++|+|..||||||.+-..|..- ..... ...+|.++-|+--||..+.+.+...
T Consensus 150 Qk~A~~~al~~~~~vitGgpGTGKTt~v~~ll~~l~~~~~~~----~~~~I~l~APTGkAA~rL~e~~~~~ 216 (586)
T TIGR01447 150 QKVAVALALKSNFSLITGGPGTGKTTTVARLLLALVKQSPKQ----GKLRIALAAPTGKAAARLAESLRKA 216 (586)
T ss_pred HHHHHHHHhhCCeEEEEcCCCCCHHHHHHHHHHHHHHhcccc----CCCcEEEECCcHHHHHHHHHHHHhh
Confidence 44445555668999999999999999877765321 11110 0147999999999998888877553
No 164
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=93.98 E-value=0.11 Score=64.50 Aligned_cols=62 Identities=13% Similarity=0.106 Sum_probs=44.6
Q ss_pred HHHHHHHcCCeEEEEecCCCCccccHHHHHHHhccCCCCCCCCCceEEEecccHHHHHHHHHHHHHHhC
Q 038192 42 EIMEAVNDNSAVIICGETGCGKTTQVPQFLFEAGFGSNRCSSRSGRIGVTQPRRVAVLATAKRVAFELG 110 (764)
Q Consensus 42 ~Il~~l~~~~vviI~GeTGSGKTTqvPq~Lle~~~~~~~~~~~~~~Ii~tQPRRiaAisvA~RVa~E~g 110 (764)
.|.+++.++.+++|.++||+|||-..-...+.... .+ .+++|+-|++..+.|+..+....+.
T Consensus 256 ~i~~~~~~~~~~~~eA~TG~GKT~ayLlp~~~~~~-~~------~~vvi~t~t~~Lq~Ql~~~~~~~l~ 317 (850)
T TIGR01407 256 LVLDQLTHSEKSLIEAPTGTGKTLGYLLPALYYAI-TE------KPVVISTNTKVLQSQLLEKDIPLLN 317 (850)
T ss_pred HHHHHhccCCcEEEECCCCCchhHHHHHHHHHHhc-CC------CeEEEEeCcHHHHHHHHHHHHHHHH
Confidence 45568888899999999999999764444444332 11 4899999999999998765443333
No 165
>KOG1802 consensus RNA helicase nonsense mRNA reducing factor (pNORF1) [RNA processing and modification]
Probab=93.95 E-value=0.11 Score=60.10 Aligned_cols=92 Identities=24% Similarity=0.303 Sum_probs=66.3
Q ss_pred hhHHHHHHHHHcCCeEEEEecCCCCccccHHHHHHHhccCCCCCCCCCceEEEecccHHHHHHHHHHHHHHhCCCCCCEe
Q 038192 38 MMEQEIMEAVNDNSAVIICGETGCGKTTQVPQFLFEAGFGSNRCSSRSGRIGVTQPRRVAVLATAKRVAFELGLHLGKEV 117 (764)
Q Consensus 38 ~~~~~Il~~l~~~~vviI~GeTGSGKTTqvPq~Lle~~~~~~~~~~~~~~Ii~tQPRRiaAisvA~RVa~E~g~~lG~~V 117 (764)
.-+...++++.++.+.+|+|++|+|||...--+++.-..... +.|+|..|.-+|.-++|+.+-+ .|-+ |
T Consensus 413 ~SQ~~AV~~VL~rplsLIQGPPGTGKTvtsa~IVyhl~~~~~------~~VLvcApSNiAVDqLaeKIh~-tgLK----V 481 (935)
T KOG1802|consen 413 ASQSNAVKHVLQRPLSLIQGPPGTGKTVTSATIVYHLARQHA------GPVLVCAPSNIAVDQLAEKIHK-TGLK----V 481 (935)
T ss_pred hHHHHHHHHHHcCCceeeecCCCCCceehhHHHHHHHHHhcC------CceEEEcccchhHHHHHHHHHh-cCce----E
Confidence 346678899999999999999999999876666664332221 5899999999999999998864 2222 2
Q ss_pred eEEeccCcccC--CCceEEEEchHHHHH
Q 038192 118 GFQVRHDKKIG--DSCSIKFMTDGILLR 143 (764)
Q Consensus 118 GY~ir~e~~~s--~~t~I~f~T~GiLLr 143 (764)
+|.-++.. ..+.+-|.|---+++
T Consensus 482 ---vRl~aksRE~~~S~vs~L~lh~~~~ 506 (935)
T KOG1802|consen 482 ---VRLCAKSREDIESDVSFLSLHEQLR 506 (935)
T ss_pred ---eeeehhhhhhccCCccHHHHHHHHh
Confidence 56555443 245566777666666
No 166
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=93.79 E-value=0.095 Score=57.26 Aligned_cols=52 Identities=23% Similarity=0.315 Sum_probs=34.2
Q ss_pred HHHHHHHHHcCCeEEEEecCCCCccccHHHHHHHhccCCCCCCCCCceEEEecccHH
Q 038192 40 EQEIMEAVNDNSAVIICGETGCGKTTQVPQFLFEAGFGSNRCSSRSGRIGVTQPRRV 96 (764)
Q Consensus 40 ~~~Il~~l~~~~vviI~GeTGSGKTTqvPq~Lle~~~~~~~~~~~~~~Ii~tQPRRi 96 (764)
.+.+..+++....++|+|+|||||||.+=. |++...... ...+|++.+...+
T Consensus 134 ~~~L~~~v~~~~nilI~G~tGSGKTTll~a-L~~~i~~~~----~~~rivtiEd~~E 185 (323)
T PRK13833 134 ASVIRSAIDSRLNIVISGGTGSGKTTLANA-VIAEIVASA----PEDRLVILEDTAE 185 (323)
T ss_pred HHHHHHHHHcCCeEEEECCCCCCHHHHHHH-HHHHHhcCC----CCceEEEecCCcc
Confidence 455667788888899999999999998844 444321110 1147777765544
No 167
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=93.53 E-value=0.035 Score=45.35 Aligned_cols=18 Identities=33% Similarity=0.621 Sum_probs=15.9
Q ss_pred CeEEEEecCCCCccccHH
Q 038192 51 SAVIICGETGCGKTTQVP 68 (764)
Q Consensus 51 ~vviI~GeTGSGKTTqvP 68 (764)
++++|+|++||||||.+=
T Consensus 24 ~~tli~G~nGsGKSTllD 41 (62)
T PF13555_consen 24 DVTLITGPNGSGKSTLLD 41 (62)
T ss_pred cEEEEECCCCCCHHHHHH
Confidence 589999999999999763
No 168
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=93.49 E-value=0.11 Score=55.94 Aligned_cols=59 Identities=22% Similarity=0.305 Sum_probs=40.1
Q ss_pred CCeEEEEecCCCCccccHHHHHHHhccCCCCCCCCCceEEEecccHHHHHHHHHHHHHHhCC
Q 038192 50 NSAVIICGETGCGKTTQVPQFLFEAGFGSNRCSSRSGRIGVTQPRRVAVLATAKRVAFELGL 111 (764)
Q Consensus 50 ~~vviI~GeTGSGKTTqvPq~Lle~~~~~~~~~~~~~~Ii~tQPRRiaAisvA~RVa~E~g~ 111 (764)
..++++.|+||+||||.+-.+........+ +....++-+-|-|++|.......+..+|.
T Consensus 194 ~~vi~~vGptGvGKTTt~~kLa~~~~~~~g---~~~V~li~~D~~r~~a~eql~~~~~~~~~ 252 (282)
T TIGR03499 194 GGVIALVGPTGVGKTTTLAKLAARFVLEHG---NKKVALITTDTYRIGAVEQLKTYAKILGV 252 (282)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHHcC---CCeEEEEECCccchhHHHHHHHHHHHhCC
Confidence 458889999999999987776554332101 01267788888898887766666655553
No 169
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=93.13 E-value=0.12 Score=56.88 Aligned_cols=47 Identities=26% Similarity=0.196 Sum_probs=31.3
Q ss_pred HHHHHHHcCCeEEEEecCCCCccccHHHHHHHhccCCCCCCCCCceEEEecccHH
Q 038192 42 EIMEAVNDNSAVIICGETGCGKTTQVPQFLFEAGFGSNRCSSRSGRIGVTQPRRV 96 (764)
Q Consensus 42 ~Il~~l~~~~vviI~GeTGSGKTTqvPq~Lle~~~~~~~~~~~~~~Ii~tQPRRi 96 (764)
-+-.+++....++|+|+|||||||.+- .|+...- . ..+|++.+-+..
T Consensus 152 ~L~~~v~~~~nili~G~tgSGKTTll~-aL~~~ip-~------~~ri~tiEd~~E 198 (332)
T PRK13900 152 FLEHAVISKKNIIISGGTSTGKTTFTN-AALREIP-A------IERLITVEDARE 198 (332)
T ss_pred HHHHHHHcCCcEEEECCCCCCHHHHHH-HHHhhCC-C------CCeEEEecCCCc
Confidence 344566788889999999999999984 4444321 1 136766555443
No 170
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein. It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication
Probab=93.13 E-value=0.19 Score=60.28 Aligned_cols=55 Identities=22% Similarity=0.250 Sum_probs=44.5
Q ss_pred HcCCeEEEEecCCCCccccHHHHHHHhccCCCCCCCCCceEEEecccHHHHHHHHHHHHHH
Q 038192 48 NDNSAVIICGETGCGKTTQVPQFLFEAGFGSNRCSSRSGRIGVTQPRRVAVLATAKRVAFE 108 (764)
Q Consensus 48 ~~~~vviI~GeTGSGKTTqvPq~Lle~~~~~~~~~~~~~~Ii~tQPRRiaAisvA~RVa~E 108 (764)
..+.|.+|.++.||||||++-.||-+..-.. ..++++.-=||-.+.+++.|....
T Consensus 47 ~~~~V~vVRSpMGTGKTtaLi~wLk~~l~~~------~~~VLvVShRrSL~~sL~~rf~~~ 101 (824)
T PF02399_consen 47 QKRGVLVVRSPMGTGKTTALIRWLKDALKNP------DKSVLVVSHRRSLTKSLAERFKKA 101 (824)
T ss_pred CCCCeEEEECCCCCCcHHHHHHHHHHhccCC------CCeEEEEEhHHHHHHHHHHHHhhc
Confidence 4678999999999999999999987653221 257888889999999999988643
No 171
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=92.94 E-value=0.097 Score=52.47 Aligned_cols=30 Identities=33% Similarity=0.462 Sum_probs=24.3
Q ss_pred HHHHHHHHHcCCeEEEEecCCCCccccHHH
Q 038192 40 EQEIMEAVNDNSAVIICGETGCGKTTQVPQ 69 (764)
Q Consensus 40 ~~~Il~~l~~~~vviI~GeTGSGKTTqvPq 69 (764)
.+-+-.+++.+..++|+|+|||||||.+-.
T Consensus 15 ~~~l~~~v~~g~~i~I~G~tGSGKTTll~a 44 (186)
T cd01130 15 AAYLWLAVEARKNILISGGTGSGKTTLLNA 44 (186)
T ss_pred HHHHHHHHhCCCEEEEECCCCCCHHHHHHH
Confidence 344556678889999999999999998844
No 172
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=92.92 E-value=0.11 Score=48.11 Aligned_cols=32 Identities=25% Similarity=0.365 Sum_probs=23.7
Q ss_pred HHHHHHHHHc--CCeEEEEecCCCCccccHHHHH
Q 038192 40 EQEIMEAVND--NSAVIICGETGCGKTTQVPQFL 71 (764)
Q Consensus 40 ~~~Il~~l~~--~~vviI~GeTGSGKTTqvPq~L 71 (764)
.+.+...+.. +..++|.|++||||||.+=.+.
T Consensus 7 ~~~i~~~~~~~~~~~v~i~G~~G~GKT~l~~~i~ 40 (151)
T cd00009 7 IEALREALELPPPKNLLLYGPPGTGKTTLARAIA 40 (151)
T ss_pred HHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHH
Confidence 4556666666 7789999999999997544433
No 173
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=92.76 E-value=0.13 Score=62.02 Aligned_cols=123 Identities=18% Similarity=0.168 Sum_probs=68.0
Q ss_pred CCeEEEEecCCCCccccHHHHHHHhccCCCCCCCCCceEEEecccHHHHHHHHHHHHHHhCCCCCCEeeEEec-cC---c
Q 038192 50 NSAVIICGETGCGKTTQVPQFLFEAGFGSNRCSSRSGRIGVTQPRRVAVLATAKRVAFELGLHLGKEVGFQVR-HD---K 125 (764)
Q Consensus 50 ~~vviI~GeTGSGKTTqvPq~Lle~~~~~~~~~~~~~~Ii~tQPRRiaAisvA~RVa~E~g~~lG~~VGY~ir-~e---~ 125 (764)
+.|+.+.|+||+||||.+-..........+. ....++-+-+-|++|+..-+..+..+|.++ .+.+... +. .
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~---kkV~lit~Dt~RigA~eQL~~~a~~~gvpv--~~~~~~~~l~~al~ 259 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARCVAREGA---DQLALLTTDSFRIGALEQLRIYGRILGVPV--HAVKDAADLRFALA 259 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhHHHHcCC---CeEEEecCcccchHHHHHHHHHHHhCCCCc--cccCCHHHHHHHHH
Confidence 4689999999999999877665332111110 113455566779999877776777776543 1222100 00 0
Q ss_pred ccCCCceEEEEchHHHHHHHHHHHHHHHHHHhhccccCCccCCCCceEEEeecccchhhhc
Q 038192 126 KIGDSCSIKFMTDGILLRELKALYEKQQQLLRSGQCIEPKDRVFPLKLILMSATLRVEDFI 186 (764)
Q Consensus 126 ~~s~~t~I~f~T~GiLLr~l~~i~de~~~~l~~~~~~~~~~~~~~lKlILMSATl~~~~f~ 186 (764)
.....--|++=|+|+.-+.-. +.++... +.. ...|.-.++++|||...+.|.
T Consensus 260 ~~~~~D~VLIDTAGRs~~d~~-l~eel~~-l~~-------~~~p~e~~LVLsAt~~~~~l~ 311 (767)
T PRK14723 260 ALGDKHLVLIDTVGMSQRDRN-VSEQIAM-LCG-------VGRPVRRLLLLNAASHGDTLN 311 (767)
T ss_pred HhcCCCEEEEeCCCCCccCHH-HHHHHHH-Hhc-------cCCCCeEEEEECCCCcHHHHH
Confidence 112233577889997654211 1222211 111 123566788899999665553
No 174
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=92.56 E-value=0.11 Score=57.67 Aligned_cols=59 Identities=20% Similarity=0.232 Sum_probs=40.7
Q ss_pred HcCCeEEEEecCCCCccccHHHHHHHhccCCCCCCCCCceEEEecccHHHHHHHHHHHHHHhCC
Q 038192 48 NDNSAVIICGETGCGKTTQVPQFLFEAGFGSNRCSSRSGRIGVTQPRRVAVLATAKRVAFELGL 111 (764)
Q Consensus 48 ~~~~vviI~GeTGSGKTTqvPq~Lle~~~~~~~~~~~~~~Ii~tQPRRiaAisvA~RVa~E~g~ 111 (764)
..+.++++.|+|||||||.+-..-....... ....++.+-|-|++|+.--+..+..+|.
T Consensus 204 ~~~~ii~lvGptGvGKTTt~akLA~~l~~~g-----~~V~lItaDtyR~gAveQLk~yae~lgv 262 (407)
T PRK12726 204 SNHRIISLIGQTGVGKTTTLVKLGWQLLKQN-----RTVGFITTDTFRSGAVEQFQGYADKLDV 262 (407)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHHcC-----CeEEEEeCCccCccHHHHHHHHhhcCCC
Confidence 4578999999999999998776654332111 1256788889999887655555555543
No 175
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=92.52 E-value=0.19 Score=57.08 Aligned_cols=123 Identities=23% Similarity=0.262 Sum_probs=67.9
Q ss_pred CCeEEEEecCCCCccccHHHHHHHhc-cCCCCCCCCCceEEEecccHHHHHHHHHHHHHHhCCCCCCEeeEEe-ccCc--
Q 038192 50 NSAVIICGETGCGKTTQVPQFLFEAG-FGSNRCSSRSGRIGVTQPRRVAVLATAKRVAFELGLHLGKEVGFQV-RHDK-- 125 (764)
Q Consensus 50 ~~vviI~GeTGSGKTTqvPq~Lle~~-~~~~~~~~~~~~Ii~tQPRRiaAisvA~RVa~E~g~~lG~~VGY~i-r~e~-- 125 (764)
+.++++.|+||+||||.+-.+..... ...+ ..+.++-+-|-|++|....+..+..+|.++ .+.+.- .+..
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g----~~V~li~~D~~r~~a~eqL~~~a~~~~vp~--~~~~~~~~l~~~l 294 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYGK----KKVALITLDTYRIGAVEQLKTYAKIMGIPV--EVVYDPKELAKAL 294 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCC----CeEEEEECCccHHHHHHHHHHHHHHhCCce--EccCCHHhHHHHH
Confidence 56889999999999998877655433 1111 125677788889988776666676666432 111110 0000
Q ss_pred -ccCCCceEEEEchHHHHHHHHHHHHHHHHHHhhccccCCccCCCCceEEEeecccchhhhc
Q 038192 126 -KIGDSCSIKFMTDGILLRELKALYEKQQQLLRSGQCIEPKDRVFPLKLILMSATLRVEDFI 186 (764)
Q Consensus 126 -~~s~~t~I~f~T~GiLLr~l~~i~de~~~~l~~~~~~~~~~~~~~lKlILMSATl~~~~f~ 186 (764)
......-|++=|+|+.-.... ..++...++.. ...+.-..+++|||.....+.
T Consensus 295 ~~~~~~DlVlIDt~G~~~~d~~-~~~~L~~ll~~-------~~~~~~~~LVl~a~~~~~~l~ 348 (424)
T PRK05703 295 EQLRDCDVILIDTAGRSQRDKR-LIEELKALIEF-------SGEPIDVYLVLSATTKYEDLK 348 (424)
T ss_pred HHhCCCCEEEEeCCCCCCCCHH-HHHHHHHHHhc-------cCCCCeEEEEEECCCCHHHHH
Confidence 112234477788887433111 11122222220 012334578899999655543
No 176
>COG3910 Predicted ATPase [General function prediction only]
Probab=92.51 E-value=0.064 Score=53.34 Aligned_cols=43 Identities=28% Similarity=0.359 Sum_probs=32.0
Q ss_pred HHHhhhcCCCchhhHHHHHHHHHcCCeEEEEecCCCCccccHHHH
Q 038192 26 EVENNRKDLPIVMMEQEIMEAVNDNSAVIICGETGCGKTTQVPQF 70 (764)
Q Consensus 26 ~~~~~R~~LPi~~~~~~Il~~l~~~~vviI~GeTGSGKTTqvPq~ 70 (764)
...+.--+||+.++.++-++ -...|++|+|+.||||||.+--+
T Consensus 15 ~~~eYp~slPa~r~l~~~Le--F~apIT~i~GENGsGKSTLLEai 57 (233)
T COG3910 15 SFEEYPFSLPAFRHLEERLE--FRAPITFITGENGSGKSTLLEAI 57 (233)
T ss_pred chhhCcccchHHHhhhhhcc--ccCceEEEEcCCCccHHHHHHHH
Confidence 34455568999888887332 45789999999999999876443
No 177
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=92.47 E-value=0.19 Score=54.85 Aligned_cols=31 Identities=35% Similarity=0.565 Sum_probs=25.1
Q ss_pred hHHHHHHHHHcCCeEEEEecCCCCccccHHH
Q 038192 39 MEQEIMEAVNDNSAVIICGETGCGKTTQVPQ 69 (764)
Q Consensus 39 ~~~~Il~~l~~~~vviI~GeTGSGKTTqvPq 69 (764)
..+.+..+++.+..++|+|+|||||||.+=.
T Consensus 137 ~~~~L~~~v~~~~~ilI~G~tGSGKTTll~a 167 (319)
T PRK13894 137 QREAIIAAVRAHRNILVIGGTGSGKTTLVNA 167 (319)
T ss_pred HHHHHHHHHHcCCeEEEECCCCCCHHHHHHH
Confidence 4455666788899999999999999998743
No 178
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=92.35 E-value=0.16 Score=56.44 Aligned_cols=126 Identities=17% Similarity=0.176 Sum_probs=68.4
Q ss_pred HHcCCeEEEEecCCCCccccHHHHHHHhccCCCCCCCCCceEEEecccHHHHHHHHHHHHHHhCCCCCCEeeEEeccC--
Q 038192 47 VNDNSAVIICGETGCGKTTQVPQFLFEAGFGSNRCSSRSGRIGVTQPRRVAVLATAKRVAFELGLHLGKEVGFQVRHD-- 124 (764)
Q Consensus 47 l~~~~vviI~GeTGSGKTTqvPq~Lle~~~~~~~~~~~~~~Ii~tQPRRiaAisvA~RVa~E~g~~lG~~VGY~ir~e-- 124 (764)
+..+.++++.|+||+||||.+-.+........+. ....++.+-+-|++|..-.+..++-+|.++.. +...-.+.
T Consensus 134 ~~~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~---~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~-~~~~~~l~~~ 209 (374)
T PRK14722 134 MERGGVFALMGPTGVGKTTTTAKLAARCVMRFGA---SKVALLTTDSYRIGGHEQLRIFGKILGVPVHA-VKDGGDLQLA 209 (374)
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCC---CeEEEEecccccccHHHHHHHHHHHcCCceEe-cCCcccHHHH
Confidence 3457799999999999999988776543221110 11345556666899988777778777654310 00000000
Q ss_pred -cccCCCceEEEEchHHHHHHHHHHHHHHHHHHhhccccCCccCCCCceEEEeecccchhhh
Q 038192 125 -KKIGDSCSIKFMTDGILLRELKALYEKQQQLLRSGQCIEPKDRVFPLKLILMSATLRVEDF 185 (764)
Q Consensus 125 -~~~s~~t~I~f~T~GiLLr~l~~i~de~~~~l~~~~~~~~~~~~~~lKlILMSATl~~~~f 185 (764)
......--|++=|.|+.-+. ..+-+.-..+. +. ..+.-+++++|||...+..
T Consensus 210 l~~l~~~DlVLIDTaG~~~~d--~~l~e~La~L~-~~------~~~~~~lLVLsAts~~~~l 262 (374)
T PRK14722 210 LAELRNKHMVLIDTIGMSQRD--RTVSDQIAMLH-GA------DTPVQRLLLLNATSHGDTL 262 (374)
T ss_pred HHHhcCCCEEEEcCCCCCccc--HHHHHHHHHHh-cc------CCCCeEEEEecCccChHHH
Confidence 01123345777788866321 00111111111 10 1234578899999955443
No 179
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=92.21 E-value=0.32 Score=59.06 Aligned_cols=66 Identities=18% Similarity=0.215 Sum_probs=45.5
Q ss_pred cCCCchhhHHHHHHHHHcCCeEEEEecCCCCccccHHHHHHHhccCCCCCCCCCceEEEecccHHHHHHHH
Q 038192 32 KDLPIVMMEQEIMEAVNDNSAVIICGETGCGKTTQVPQFLFEAGFGSNRCSSRSGRIGVTQPRRVAVLATA 102 (764)
Q Consensus 32 ~~LPi~~~~~~Il~~l~~~~vviI~GeTGSGKTTqvPq~Lle~~~~~~~~~~~~~~Ii~tQPRRiaAisvA 102 (764)
........|.+.+..+..+++++|+|..||||||.+=.++ +.....+ ....|+++-|+--||..++
T Consensus 320 ~~~~l~~~Q~~Ai~~~~~~~~~iitGgpGTGKTt~l~~i~-~~~~~~~----~~~~v~l~ApTg~AA~~L~ 385 (720)
T TIGR01448 320 LRKGLSEEQKQALDTAIQHKVVILTGGPGTGKTTITRAII-ELAEELG----GLLPVGLAAPTGRAAKRLG 385 (720)
T ss_pred cCCCCCHHHHHHHHHHHhCCeEEEECCCCCCHHHHHHHHH-HHHHHcC----CCceEEEEeCchHHHHHHH
Confidence 3445566677777888888999999999999999775443 2211111 0147888999988886443
No 180
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=92.21 E-value=0.32 Score=54.14 Aligned_cols=61 Identities=23% Similarity=0.296 Sum_probs=45.7
Q ss_pred CCeEEEEecCCCCccccHHHHHHHhccCCCCCCCCCceEEEecccHHHHHHHHHHHHHHhCCCC
Q 038192 50 NSAVIICGETGCGKTTQVPQFLFEAGFGSNRCSSRSGRIGVTQPRRVAVLATAKRVAFELGLHL 113 (764)
Q Consensus 50 ~~vviI~GeTGSGKTTqvPq~Lle~~~~~~~~~~~~~~Ii~tQPRRiaAisvA~RVa~E~g~~l 113 (764)
+.|+.+.|+||-||||-+-..=....+..++ ....|+=|-.-||+|..--+.-|+-||.++
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~---~kVaiITtDtYRIGA~EQLk~Ya~im~vp~ 263 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVMLKKK---KKVAIITTDTYRIGAVEQLKTYADIMGVPL 263 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHhhccC---cceEEEEeccchhhHHHHHHHHHHHhCCce
Confidence 7899999999999999876643332211111 236788888999999888888999998764
No 181
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=92.11 E-value=0.14 Score=54.49 Aligned_cols=32 Identities=25% Similarity=0.404 Sum_probs=23.3
Q ss_pred HHHHHHHHc-CCeEEEEecCCCCccccHHHHHH
Q 038192 41 QEIMEAVND-NSAVIICGETGCGKTTQVPQFLF 72 (764)
Q Consensus 41 ~~Il~~l~~-~~vviI~GeTGSGKTTqvPq~Ll 72 (764)
+.+.+++.. +..++|+|+|||||||.+-.++.
T Consensus 70 ~~l~~~~~~~~GlilisG~tGSGKTT~l~all~ 102 (264)
T cd01129 70 EIFRKLLEKPHGIILVTGPTGSGKTTTLYSALS 102 (264)
T ss_pred HHHHHHHhcCCCEEEEECCCCCcHHHHHHHHHh
Confidence 344555654 45799999999999998865443
No 182
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=92.09 E-value=0.35 Score=52.17 Aligned_cols=31 Identities=23% Similarity=0.312 Sum_probs=25.2
Q ss_pred HHHHHHHcCCeEEEEecCCCCccccHHHHHH
Q 038192 42 EIMEAVNDNSAVIICGETGCGKTTQVPQFLF 72 (764)
Q Consensus 42 ~Il~~l~~~~vviI~GeTGSGKTTqvPq~Ll 72 (764)
.|.+++.++..++|.++||+|||..+--..+
T Consensus 19 ~v~~~~~~~~~~~~eapTGtGKTl~~L~~al 49 (289)
T smart00489 19 ELKRVLDRGKIGILESPTGTGKTLSLLCLTL 49 (289)
T ss_pred HHHHHHHcCCcEEEECCCCcchhHHHHHHHH
Confidence 4778888899999999999999976554443
No 183
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=92.09 E-value=0.35 Score=52.17 Aligned_cols=31 Identities=23% Similarity=0.312 Sum_probs=25.2
Q ss_pred HHHHHHHcCCeEEEEecCCCCccccHHHHHH
Q 038192 42 EIMEAVNDNSAVIICGETGCGKTTQVPQFLF 72 (764)
Q Consensus 42 ~Il~~l~~~~vviI~GeTGSGKTTqvPq~Ll 72 (764)
.|.+++.++..++|.++||+|||..+--..+
T Consensus 19 ~v~~~~~~~~~~~~eapTGtGKTl~~L~~al 49 (289)
T smart00488 19 ELKRVLDRGKIGILESPTGTGKTLSLLCLTL 49 (289)
T ss_pred HHHHHHHcCCcEEEECCCCcchhHHHHHHHH
Confidence 4778888899999999999999976554443
No 184
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=91.94 E-value=0.23 Score=55.46 Aligned_cols=56 Identities=18% Similarity=0.308 Sum_probs=37.2
Q ss_pred CeEEEEecCCCCccccHHHHHHHhccCCCCCCCCCceEEEecccHHHHHHHHHHHHHHhCC
Q 038192 51 SAVIICGETGCGKTTQVPQFLFEAGFGSNRCSSRSGRIGVTQPRRVAVLATAKRVAFELGL 111 (764)
Q Consensus 51 ~vviI~GeTGSGKTTqvPq~Lle~~~~~~~~~~~~~~Ii~tQPRRiaAisvA~RVa~E~g~ 111 (764)
.++.+.|+|||||||.+-..-..... .+ ....++-+-|-|++|+.--+..+...|.
T Consensus 242 ~vI~LVGptGvGKTTTiaKLA~~L~~-~G----kkVglI~aDt~RiaAvEQLk~yae~lgi 297 (436)
T PRK11889 242 QTIALIGPTGVGKTTTLAKMAWQFHG-KK----KTVGFITTDHSRIGTVQQLQDYVKTIGF 297 (436)
T ss_pred cEEEEECCCCCcHHHHHHHHHHHHHH-cC----CcEEEEecCCcchHHHHHHHHHhhhcCC
Confidence 58899999999999987766443221 11 1245667778898887655545555543
No 185
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=91.94 E-value=0.24 Score=56.38 Aligned_cols=43 Identities=26% Similarity=0.397 Sum_probs=29.7
Q ss_pred CCCchhhHH-HHHHHHHcCC-eEEEEecCCCCccccHHHHHHHhc
Q 038192 33 DLPIVMMEQ-EIMEAVNDNS-AVIICGETGCGKTTQVPQFLFEAG 75 (764)
Q Consensus 33 ~LPi~~~~~-~Il~~l~~~~-vviI~GeTGSGKTTqvPq~Lle~~ 75 (764)
+|..+.... .+..++...+ .++++|+|||||||-+-.+|-+..
T Consensus 239 ~Lg~~~~~~~~~~~~~~~p~GliLvTGPTGSGKTTTLY~~L~~ln 283 (500)
T COG2804 239 KLGMSPFQLARLLRLLNRPQGLILVTGPTGSGKTTTLYAALSELN 283 (500)
T ss_pred HhCCCHHHHHHHHHHHhCCCeEEEEeCCCCCCHHHHHHHHHHHhc
Confidence 444444444 4555555544 788999999999999888876643
No 186
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=91.69 E-value=0.4 Score=54.35 Aligned_cols=55 Identities=16% Similarity=0.186 Sum_probs=35.9
Q ss_pred CeEEEEecCCCCccccHHHHHHHhccCCCCCCCCCceEEEecccHHHHHHHHHHHHHHhC
Q 038192 51 SAVIICGETGCGKTTQVPQFLFEAGFGSNRCSSRSGRIGVTQPRRVAVLATAKRVAFELG 110 (764)
Q Consensus 51 ~vviI~GeTGSGKTTqvPq~Lle~~~~~~~~~~~~~~Ii~tQPRRiaAisvA~RVa~E~g 110 (764)
.++.++|.+||||||..-..-..... .+ ..+-++.+-|-|.+|..-.+..+...+
T Consensus 101 ~vi~lvG~~GvGKTTtaaKLA~~l~~-~G----~kV~lV~~D~~R~aA~eQLk~~a~~~~ 155 (429)
T TIGR01425 101 NVIMFVGLQGSGKTTTCTKLAYYYQR-KG----FKPCLVCADTFRAGAFDQLKQNATKAR 155 (429)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHH-CC----CCEEEEcCcccchhHHHHHHHHhhccC
Confidence 47889999999999976554322111 11 125677888999888765554555444
No 187
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=91.56 E-value=0.14 Score=56.76 Aligned_cols=28 Identities=36% Similarity=0.639 Sum_probs=22.0
Q ss_pred HHHHHHH-cCCeEEEEecCCCCccccHHH
Q 038192 42 EIMEAVN-DNSAVIICGETGCGKTTQVPQ 69 (764)
Q Consensus 42 ~Il~~l~-~~~vviI~GeTGSGKTTqvPq 69 (764)
.+.+++. .+..++|+|+|||||||.+--
T Consensus 125 ~~~~~~~~~~glilI~GpTGSGKTTtL~a 153 (358)
T TIGR02524 125 AIIDAIAPQEGIVFITGATGSGKSTLLAA 153 (358)
T ss_pred HHHHHHhccCCEEEEECCCCCCHHHHHHH
Confidence 3556665 567899999999999998743
No 188
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=91.53 E-value=0.097 Score=55.68 Aligned_cols=22 Identities=27% Similarity=0.585 Sum_probs=18.9
Q ss_pred CeEEEEecCCCCccccHHHHHH
Q 038192 51 SAVIICGETGCGKTTQVPQFLF 72 (764)
Q Consensus 51 ~vviI~GeTGSGKTTqvPq~Ll 72 (764)
-.|+|+|+|||||||-+--+|-
T Consensus 126 GLILVTGpTGSGKSTTlAamId 147 (353)
T COG2805 126 GLILVTGPTGSGKSTTLAAMID 147 (353)
T ss_pred ceEEEeCCCCCcHHHHHHHHHH
Confidence 4688999999999999887664
No 189
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=91.51 E-value=0.17 Score=55.94 Aligned_cols=45 Identities=24% Similarity=0.361 Sum_probs=30.8
Q ss_pred HHHHHHcCCeEEEEecCCCCccccHHHHHHHhccCCCCCCCCCceEEEecccH
Q 038192 43 IMEAVNDNSAVIICGETGCGKTTQVPQFLFEAGFGSNRCSSRSGRIGVTQPRR 95 (764)
Q Consensus 43 Il~~l~~~~vviI~GeTGSGKTTqvPq~Lle~~~~~~~~~~~~~~Ii~tQPRR 95 (764)
+-.+++.+..++|+|+|||||||.+--+ +... .. ..+|+..+...
T Consensus 155 l~~~v~~~~nilI~G~tGSGKTTll~aL-l~~i-~~------~~rivtiEd~~ 199 (344)
T PRK13851 155 LHACVVGRLTMLLCGPTGSGKTTMSKTL-ISAI-PP------QERLITIEDTL 199 (344)
T ss_pred HHHHHHcCCeEEEECCCCccHHHHHHHH-Hccc-CC------CCCEEEECCCc
Confidence 4456778889999999999999988543 3322 11 14676666654
No 190
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=91.50 E-value=0.18 Score=51.15 Aligned_cols=20 Identities=35% Similarity=0.717 Sum_probs=16.7
Q ss_pred eEEEEecCCCCccccHHHHH
Q 038192 52 AVIICGETGCGKTTQVPQFL 71 (764)
Q Consensus 52 vviI~GeTGSGKTTqvPq~L 71 (764)
.++|+|+|||||||.+-.++
T Consensus 3 lilI~GptGSGKTTll~~ll 22 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMI 22 (198)
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 58999999999999885543
No 191
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=91.31 E-value=1.9 Score=54.11 Aligned_cols=110 Identities=15% Similarity=0.215 Sum_probs=60.9
Q ss_pred hhhccCCCCceEEEEecCcccccCCCCC--eEEEEeCCcccceeecc----------CCCccccceeec--cHHhHHHhc
Q 038192 453 RVFEDVKEGERLVVVSTNVAETSLTIPG--IKYVVDTGREKVKKYNS----------ANGIESYEIQWI--SKASAAQRA 518 (764)
Q Consensus 453 ~vf~~~~~g~rKVIlsTNIAEtSITIpd--V~~VID~G~~K~~~yd~----------~~~~~~l~~~~i--Skasa~QR~ 518 (764)
++.+.|..+...|+++|.-.--||++|+ .+.||=.+++-..-=|| ..|-+.+...-. .--..+|=.
T Consensus 795 ~l~~~F~~~~~~iLlG~~sFwEGVD~pg~~l~~viI~kLPF~~p~dp~~~a~~~~~~~~g~~~F~~~~lP~A~~~lkQg~ 874 (928)
T PRK08074 795 RLTKQFQQFDKAILLGTSSFWEGIDIPGDELSCLVIVRLPFAPPDQPVMEAKSEWAKEQGENPFQELSLPQAVLRFKQGF 874 (928)
T ss_pred HHHHHHHhcCCeEEEecCcccCccccCCCceEEEEEecCCCCCCCCHHHHHHHHHHHHhCCCchhhhhhHHHHHHHHhhh
Confidence 3344444466789999999999999996 47777667653211111 112122221111 222367888
Q ss_pred cccCCCCC--CEEE----EccCHHHhcccCCCCCCC--cccccChhhHHHHHHH
Q 038192 519 GRAGRTAP--GHCY----RLYSSAVFNNILPDFSCA--EISKVPVDGVVLLMKS 564 (764)
Q Consensus 519 GRAGR~~~--G~cy----rLys~~~~~~~l~~~~~P--EI~r~~L~~~~L~lk~ 564 (764)
||.=|... |..+ |+.++. |-..+. ...| .+.+.++.++.-.++.
T Consensus 875 GRlIRs~~D~G~v~ilD~R~~~k~-Yg~~~l-~sLP~~~~~~~~~~~~~~~~~~ 926 (928)
T PRK08074 875 GRLIRTETDRGTVFVLDRRLTTTS-YGKYFL-ESLPTVPVYEGTLEELLEEVEE 926 (928)
T ss_pred hhhcccCCceEEEEEecCccccch-HHHHHH-HhCCCCCcccCCHHHHHHHHHh
Confidence 99988875 8877 444432 322221 1222 2445677776655543
No 192
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=91.26 E-value=0.095 Score=48.12 Aligned_cols=16 Identities=44% Similarity=0.760 Sum_probs=14.0
Q ss_pred eEEEEecCCCCccccH
Q 038192 52 AVIICGETGCGKTTQV 67 (764)
Q Consensus 52 vviI~GeTGSGKTTqv 67 (764)
|++|+|.+||||||..
T Consensus 1 vI~I~G~~gsGKST~a 16 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLA 16 (121)
T ss_dssp EEEEEESTTSSHHHHH
T ss_pred CEEEECCCCCCHHHHH
Confidence 6899999999999754
No 193
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=91.19 E-value=0.39 Score=53.59 Aligned_cols=55 Identities=16% Similarity=0.334 Sum_probs=38.9
Q ss_pred HHHHHHHH------HcCCeEEEEecCCCCccccHHHHHHHhccCCCCCCCCCceEEEecccHHHHHHH
Q 038192 40 EQEIMEAV------NDNSAVIICGETGCGKTTQVPQFLFEAGFGSNRCSSRSGRIGVTQPRRVAVLAT 101 (764)
Q Consensus 40 ~~~Il~~l------~~~~vviI~GeTGSGKTTqvPq~Lle~~~~~~~~~~~~~~Ii~tQPRRiaAisv 101 (764)
|+.+++.+ .....++|+|+-|+|||+.+=.+.-.. ... ...++++-|+.+||..+
T Consensus 6 Q~~~~~~v~~~~~~~~~~~~fv~G~~GtGKs~l~~~i~~~~-~~~------~~~~~~~a~tg~AA~~i 66 (364)
T PF05970_consen 6 QRRVFDTVIEAIENEEGLNFFVTGPAGTGKSFLIKAIIDYL-RSR------GKKVLVTAPTGIAAFNI 66 (364)
T ss_pred HHHHHHHHHHHHHccCCcEEEEEcCCCCChhHHHHHHHHHh-ccc------cceEEEecchHHHHHhc
Confidence 44455555 666789999999999997765544321 111 14799999999999776
No 194
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=91.19 E-value=0.28 Score=48.61 Aligned_cols=25 Identities=36% Similarity=0.553 Sum_probs=21.9
Q ss_pred eEEEEecCCCCccccHHHHHHHhcc
Q 038192 52 AVIICGETGCGKTTQVPQFLFEAGF 76 (764)
Q Consensus 52 vviI~GeTGSGKTTqvPq~Lle~~~ 76 (764)
+++|.|++|||||+..-||+.+...
T Consensus 1 ~~li~G~~G~GKT~l~~~~~~~~~~ 25 (187)
T cd01124 1 STLLSGGPGTGKTTFALQFLYAGLA 25 (187)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 4789999999999999999988653
No 195
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=91.10 E-value=0.13 Score=47.17 Aligned_cols=25 Identities=32% Similarity=0.477 Sum_probs=20.4
Q ss_pred CCeEEEEecCCCCccccHHHHHHHh
Q 038192 50 NSAVIICGETGCGKTTQVPQFLFEA 74 (764)
Q Consensus 50 ~~vviI~GeTGSGKTTqvPq~Lle~ 74 (764)
++.++|.|++||||||.+-.++...
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~ 26 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALAREL 26 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhcc
Confidence 5678999999999999887766543
No 196
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=90.85 E-value=1.2 Score=47.48 Aligned_cols=54 Identities=17% Similarity=0.253 Sum_probs=33.6
Q ss_pred cCCeEEEEecCCCCccccHHHHHHHhccCCCCCCCCCceEEEecccHHHHHHHHHHHHH
Q 038192 49 DNSAVIICGETGCGKTTQVPQFLFEAGFGSNRCSSRSGRIGVTQPRRVAVLATAKRVAF 107 (764)
Q Consensus 49 ~~~vviI~GeTGSGKTTqvPq~Lle~~~~~~~~~~~~~~Ii~tQPRRiaAisvA~RVa~ 107 (764)
..+++.+.|++|+||||.+-........ .+ ....++.+-+.|+++..--+..+.
T Consensus 74 ~~~~i~~~G~~g~GKTtl~~~l~~~l~~-~~----~~v~~i~~D~~ri~~~~ql~~~~~ 127 (270)
T PRK06731 74 EVQTIALIGPTGVGKTTTLAKMAWQFHG-KK----KTVGFITTDHSRIGTVQQLQDYVK 127 (270)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHHHHHH-cC----CeEEEEecCCCCHHHHHHHHHHhh
Confidence 3478999999999999976655433211 11 124556677888877654333333
No 197
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=90.78 E-value=0.25 Score=57.15 Aligned_cols=58 Identities=19% Similarity=0.260 Sum_probs=36.8
Q ss_pred HHHcCCeEEEEecCCCCccccHHHHHHHhccCCCCCCCCCceEEEecccHHHHHHHHHHHH
Q 038192 46 AVNDNSAVIICGETGCGKTTQVPQFLFEAGFGSNRCSSRSGRIGVTQPRRVAVLATAKRVA 106 (764)
Q Consensus 46 ~l~~~~vviI~GeTGSGKTTqvPq~Lle~~~~~~~~~~~~~~Ii~tQPRRiaAisvA~RVa 106 (764)
.+..+.++.+.|+||+||||.+-.+......... +....++-+-+.|+++....+..+
T Consensus 346 ~l~~G~vIaLVGPtGvGKTTtaakLAa~la~~~~---gkkVaLIdtDtyRigA~EQLk~ya 403 (559)
T PRK12727 346 PLERGGVIALVGPTGAGKTTTIAKLAQRFAAQHA---PRDVALVTTDTQRVGGREQLHSYG 403 (559)
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHHHHHHhcC---CCceEEEecccccccHHHHHHHhh
Confidence 3456889999999999999987665543221110 012455666778988765444333
No 198
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=90.70 E-value=0.26 Score=54.52 Aligned_cols=30 Identities=23% Similarity=0.509 Sum_probs=22.2
Q ss_pred HHHHHHH-cCCeEEEEecCCCCccccHHHHH
Q 038192 42 EIMEAVN-DNSAVIICGETGCGKTTQVPQFL 71 (764)
Q Consensus 42 ~Il~~l~-~~~vviI~GeTGSGKTTqvPq~L 71 (764)
.+.+.+. .+..++|+|+|||||||.+-.++
T Consensus 113 ~l~~~~~~~~g~ili~G~tGSGKTT~l~al~ 143 (343)
T TIGR01420 113 VLRELAERPRGLILVTGPTGSGKSTTLASMI 143 (343)
T ss_pred HHHHHHhhcCcEEEEECCCCCCHHHHHHHHH
Confidence 4455553 35689999999999999985443
No 199
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=90.69 E-value=0.1 Score=53.08 Aligned_cols=23 Identities=35% Similarity=0.629 Sum_probs=19.6
Q ss_pred HHHcCCeEEEEecCCCCccccHH
Q 038192 46 AVNDNSAVIICGETGCGKTTQVP 68 (764)
Q Consensus 46 ~l~~~~vviI~GeTGSGKTTqvP 68 (764)
.+..+.|++|+|+.||||||.+=
T Consensus 24 ~v~~Gevv~iiGpSGSGKSTlLR 46 (240)
T COG1126 24 SVEKGEVVVIIGPSGSGKSTLLR 46 (240)
T ss_pred eEcCCCEEEEECCCCCCHHHHHH
Confidence 35678999999999999999753
No 200
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=90.67 E-value=0.34 Score=55.67 Aligned_cols=124 Identities=18% Similarity=0.182 Sum_probs=68.8
Q ss_pred cCCeEEEEecCCCCccccHHHHHHHhccCCCCCCCCCceEEEecccHHHHHHHHHHHHHHhCCCCCCEeeEE---eccC-
Q 038192 49 DNSAVIICGETGCGKTTQVPQFLFEAGFGSNRCSSRSGRIGVTQPRRVAVLATAKRVAFELGLHLGKEVGFQ---VRHD- 124 (764)
Q Consensus 49 ~~~vviI~GeTGSGKTTqvPq~Lle~~~~~~~~~~~~~~Ii~tQPRRiaAisvA~RVa~E~g~~lG~~VGY~---ir~e- 124 (764)
.+.|+.+.|+||+||||.+-..........+. ....++-+-+-|++|..-.+..+..+|..+- +.+. ...+
T Consensus 255 ~g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~---~kV~LI~~Dt~RigA~EQLr~~AeilGVpv~--~~~~~~Dl~~aL 329 (484)
T PRK06995 255 RGGVFALMGPTGVGKTTTTAKLAARCVMRHGA---SKVALLTTDSYRIGGHEQLRIYGKILGVPVH--AVKDAADLRLAL 329 (484)
T ss_pred CCcEEEEECCCCccHHHHHHHHHHHHHHhcCC---CeEEEEeCCccchhHHHHHHHHHHHhCCCee--ccCCchhHHHHH
Confidence 35789999999999999877765332111110 1134566677899998877777887775321 1110 0000
Q ss_pred cccCCCceEEEEchHHHHHHHHHHHHHHHHHHhhccccCCccCCCCceEEEeecccchhhhc
Q 038192 125 KKIGDSCSIKFMTDGILLRELKALYEKQQQLLRSGQCIEPKDRVFPLKLILMSATLRVEDFI 186 (764)
Q Consensus 125 ~~~s~~t~I~f~T~GiLLr~l~~i~de~~~~l~~~~~~~~~~~~~~lKlILMSATl~~~~f~ 186 (764)
......-.+++=|.|+.-+.-. ..+.-.++. .. ..|.-+++++|||.....+.
T Consensus 330 ~~L~d~d~VLIDTaGr~~~d~~--~~e~~~~l~-~~------~~p~e~~LVLdAt~~~~~l~ 382 (484)
T PRK06995 330 SELRNKHIVLIDTIGMSQRDRM--VSEQIAMLH-GA------GAPVKRLLLLNATSHGDTLN 382 (484)
T ss_pred HhccCCCeEEeCCCCcChhhHH--HHHHHHHHh-cc------CCCCeeEEEEeCCCcHHHHH
Confidence 0112334688899998765211 111111111 11 01333678889998655443
No 201
>PRK10867 signal recognition particle protein; Provisional
Probab=90.62 E-value=0.32 Score=55.25 Aligned_cols=57 Identities=18% Similarity=0.239 Sum_probs=38.4
Q ss_pred CeEEEEecCCCCccccHHHHHHHhccCCCCCCCCCceEEEecccHHHHHHHHHHHHHHhCC
Q 038192 51 SAVIICGETGCGKTTQVPQFLFEAGFGSNRCSSRSGRIGVTQPRRVAVLATAKRVAFELGL 111 (764)
Q Consensus 51 ~vviI~GeTGSGKTTqvPq~Lle~~~~~~~~~~~~~~Ii~tQPRRiaAisvA~RVa~E~g~ 111 (764)
.+++++|.+||||||..-.+-.......+ ....++.+-++|.+|+.--+..+...|.
T Consensus 101 ~vI~~vG~~GsGKTTtaakLA~~l~~~~G----~kV~lV~~D~~R~aa~eQL~~~a~~~gv 157 (433)
T PRK10867 101 TVIMMVGLQGAGKTTTAGKLAKYLKKKKK----KKVLLVAADVYRPAAIEQLKTLGEQIGV 157 (433)
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHhcC----CcEEEEEccccchHHHHHHHHHHhhcCC
Confidence 47889999999999976655432211101 1267888999999988655556665553
No 202
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=90.48 E-value=1.4 Score=53.69 Aligned_cols=102 Identities=23% Similarity=0.239 Sum_probs=66.0
Q ss_pred hhhcCCCchhhHHHHHHHHHcCCeEEEEecCCCCccccHHHHHHHhccCCCCCCCCCceEEEecccHHHHHHHHHHHHHH
Q 038192 29 NNRKDLPIVMMEQEIMEAVNDNSAVIICGETGCGKTTQVPQFLFEAGFGSNRCSSRSGRIGVTQPRRVAVLATAKRVAFE 108 (764)
Q Consensus 29 ~~R~~LPi~~~~~~Il~~l~~~~vviI~GeTGSGKTTqvPq~Lle~~~~~~~~~~~~~~Ii~tQPRRiaAisvA~RVa~E 108 (764)
..|+.|-...+--+++-++.=++--|..=.||-|||+......+-+++... +--+||- .. -+|+|=|++
T Consensus 77 a~~R~lG~r~ydVQliGgl~Lh~G~IAEM~TGEGKTL~atlpaylnAL~Gk------gVhVVTv-Nd----YLA~RDae~ 145 (939)
T PRK12902 77 ASKRVLGMRHFDVQLIGGMVLHEGQIAEMKTGEGKTLVATLPSYLNALTGK------GVHVVTV-ND----YLARRDAEW 145 (939)
T ss_pred HHHHHhCCCcchhHHHhhhhhcCCceeeecCCCChhHHHHHHHHHHhhcCC------CeEEEeC-CH----HHHHhHHHH
Confidence 345667777777788888777777788889999999864444444555433 2344453 33 345666666
Q ss_pred hCC---CCCCEeeEEeccCc----ccCCCceEEEEchHHH
Q 038192 109 LGL---HLGKEVGFQVRHDK----KIGDSCSIKFMTDGIL 141 (764)
Q Consensus 109 ~g~---~lG~~VGY~ir~e~----~~s~~t~I~f~T~GiL 141 (764)
|+. -+|-+||......+ +..=.++|+|+|++-|
T Consensus 146 m~~vy~~LGLtvg~i~~~~~~~err~aY~~DItYgTn~e~ 185 (939)
T PRK12902 146 MGQVHRFLGLSVGLIQQDMSPEERKKNYACDITYATNSEL 185 (939)
T ss_pred HHHHHHHhCCeEEEECCCCChHHHHHhcCCCeEEecCCcc
Confidence 653 67889997543211 1112688999999866
No 203
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=90.42 E-value=0.33 Score=47.73 Aligned_cols=51 Identities=16% Similarity=0.202 Sum_probs=31.2
Q ss_pred eEEEEecCCCCccccHHHHHHHhccCCCCCCCCCceEEEecccHHHHHHHHHHHHH
Q 038192 52 AVIICGETGCGKTTQVPQFLFEAGFGSNRCSSRSGRIGVTQPRRVAVLATAKRVAF 107 (764)
Q Consensus 52 vviI~GeTGSGKTTqvPq~Lle~~~~~~~~~~~~~~Ii~tQPRRiaAisvA~RVa~ 107 (764)
++++.|++||||||..-.+......... ...++-+-++|..+...-.+.+.
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~~~g~-----~v~~i~~D~~~~~~~~~l~~~~~ 52 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLKKKGK-----KVLLVAADTYRPAAIEQLRVLGE 52 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCC-----cEEEEEcCCCChHHHHHHHHhcc
Confidence 6789999999999986555443221111 14455667888766544343343
No 204
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=90.23 E-value=0.4 Score=58.41 Aligned_cols=56 Identities=27% Similarity=0.339 Sum_probs=39.0
Q ss_pred eEEEEecCcccccCCCC-------------------------------------CeEEEEeCCcccceeeccCCCccccc
Q 038192 463 RLVVVSTNVAETSLTIP-------------------------------------GIKYVVDTGREKVKKYNSANGIESYE 505 (764)
Q Consensus 463 rKVIlsTNIAEtSITIp-------------------------------------dV~~VID~G~~K~~~yd~~~~~~~l~ 505 (764)
-.|.||||.|-||-+|. +=-|||=+.++...+-|
T Consensus 498 GaVTIATNMAGRGTDIkLg~n~~~~~~~~~~~~~~~~~~~~~~~~~~~e~V~e~GGLhVIgTerheSrRID--------- 568 (913)
T PRK13103 498 GALTIATNMAGRGTDILLGGNWEVEVAALENPTPEQIAQIKADWQKRHQQVIEAGGLHVIASERHESRRID--------- 568 (913)
T ss_pred CcEEEeccCCCCCCCEecCCchHHHHHhhhhhhHHHHHHHHHHHHhHHHHHHHcCCCEEEeeccCchHHHH---------
Confidence 35999999999999983 12266655544433333
Q ss_pred eeeccHHhHHHhccccCCCCC-CEEEEccCHH
Q 038192 506 IQWISKASAAQRAGRAGRTAP-GHCYRLYSSA 536 (764)
Q Consensus 506 ~~~iSkasa~QR~GRAGR~~~-G~cyrLys~~ 536 (764)
.|=+|||||.|. |.+--..|-+
T Consensus 569 ---------~QLrGRaGRQGDPGsS~f~lSlE 591 (913)
T PRK13103 569 ---------NQLRGRAGRQGDPGSSRFYLSLE 591 (913)
T ss_pred ---------HHhccccccCCCCCceEEEEEcC
Confidence 588999999996 8776555543
No 205
>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]
Probab=90.15 E-value=0.38 Score=52.36 Aligned_cols=46 Identities=24% Similarity=0.226 Sum_probs=32.0
Q ss_pred HHHHHHcCCeEEEEecCCCCccccHHHHHHHhccCCCCCCCCCceEEEecccHH
Q 038192 43 IMEAVNDNSAVIICGETGCGKTTQVPQFLFEAGFGSNRCSSRSGRIGVTQPRRV 96 (764)
Q Consensus 43 Il~~l~~~~vviI~GeTGSGKTTqvPq~Lle~~~~~~~~~~~~~~Ii~tQPRRi 96 (764)
+..++.....++|+|.|||||||.+=-++.+-.. .-+|+|.+-+.+
T Consensus 166 L~~av~~r~NILisGGTGSGKTTlLNal~~~i~~--------~eRvItiEDtaE 211 (355)
T COG4962 166 LRRAVGIRCNILISGGTGSGKTTLLNALSGFIDS--------DERVITIEDTAE 211 (355)
T ss_pred HHHHHhhceeEEEeCCCCCCHHHHHHHHHhcCCC--------cccEEEEeehhh
Confidence 4445555567999999999999987655543221 138888887754
No 206
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=89.90 E-value=0.59 Score=53.24 Aligned_cols=57 Identities=19% Similarity=0.226 Sum_probs=38.9
Q ss_pred CeEEEEecCCCCccccHHHHHHHhccCCCCCCCCCceEEEecccHHHHHHHHHHHHHHhCCC
Q 038192 51 SAVIICGETGCGKTTQVPQFLFEAGFGSNRCSSRSGRIGVTQPRRVAVLATAKRVAFELGLH 112 (764)
Q Consensus 51 ~vviI~GeTGSGKTTqvPq~Lle~~~~~~~~~~~~~~Ii~tQPRRiaAisvA~RVa~E~g~~ 112 (764)
.+++++|.+|+||||..-.+...... .+ ....++.+-+.|.+|...-+.++...|.+
T Consensus 96 ~vI~lvG~~GsGKTTtaakLA~~L~~-~g----~kV~lV~~D~~R~aa~eQL~~la~~~gvp 152 (437)
T PRK00771 96 QTIMLVGLQGSGKTTTAAKLARYFKK-KG----LKVGLVAADTYRPAAYDQLKQLAEKIGVP 152 (437)
T ss_pred eEEEEECCCCCcHHHHHHHHHHHHHH-cC----CeEEEecCCCCCHHHHHHHHHHHHHcCCc
Confidence 47889999999999986654432211 11 12567778888998877667777766543
No 207
>PF12846 AAA_10: AAA-like domain
Probab=89.62 E-value=0.28 Score=52.24 Aligned_cols=41 Identities=29% Similarity=0.366 Sum_probs=28.7
Q ss_pred CCeEEEEecCCCCccccHHHHHHHhccCCCCCCCCCceEEEecccHHH
Q 038192 50 NSAVIICGETGCGKTTQVPQFLFEAGFGSNRCSSRSGRIGVTQPRRVA 97 (764)
Q Consensus 50 ~~vviI~GeTGSGKTTqvPq~Lle~~~~~~~~~~~~~~Ii~tQPRRia 97 (764)
|..++|.|.|||||||.+-.++.+... .+ ..+++.-|....
T Consensus 1 n~h~~i~G~tGsGKT~~~~~l~~~~~~-~g------~~~~i~D~~g~~ 41 (304)
T PF12846_consen 1 NPHTLILGKTGSGKTTLLKNLLEQLIR-RG------PRVVIFDPKGDY 41 (304)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHH-cC------CCEEEEcCCchH
Confidence 567899999999999988865554332 22 467777777543
No 208
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=89.43 E-value=0.7 Score=57.87 Aligned_cols=68 Identities=13% Similarity=0.068 Sum_probs=46.8
Q ss_pred hcCCCchhhHH-------HHHHHHHcCCeEEEEecCCCCccccHHHHHHHhccCCCCCCCCCceEEEecccHHHHHHHHH
Q 038192 31 RKDLPIVMMEQ-------EIMEAVNDNSAVIICGETGCGKTTQVPQFLFEAGFGSNRCSSRSGRIGVTQPRRVAVLATAK 103 (764)
Q Consensus 31 R~~LPi~~~~~-------~Il~~l~~~~vviI~GeTGSGKTTqvPq~Lle~~~~~~~~~~~~~~Ii~tQPRRiaAisvA~ 103 (764)
...+|-|..|. +|.+++.++.+++|.++||+|||...-...+..+...+ .+++|+-++...--|+..
T Consensus 250 ~~~~~~~e~R~~Q~~m~~~v~~~l~~~~~~~iEA~TGtGKTlaYLlpa~~~a~~~~------~~vvIsT~T~~LQ~Ql~~ 323 (928)
T PRK08074 250 SLAMPKYEKREGQQEMMKEVYTALRDSEHALIEAGTGTGKSLAYLLPAAYFAKKKE------EPVVISTYTIQLQQQLLE 323 (928)
T ss_pred HHhCCCCcCCHHHHHHHHHHHHHHhcCCCEEEECCCCCchhHHHHHHHHHHhhccC------CeEEEEcCCHHHHHHHHH
Confidence 34566554432 56778888999999999999999863333333222222 489999999988888765
Q ss_pred H
Q 038192 104 R 104 (764)
Q Consensus 104 R 104 (764)
+
T Consensus 324 k 324 (928)
T PRK08074 324 K 324 (928)
T ss_pred h
Confidence 4
No 209
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=89.41 E-value=0.22 Score=47.32 Aligned_cols=31 Identities=26% Similarity=0.460 Sum_probs=24.7
Q ss_pred HHHHHHHHHcCCeEEEEecCCCCccccHHHH
Q 038192 40 EQEIMEAVNDNSAVIICGETGCGKTTQVPQF 70 (764)
Q Consensus 40 ~~~Il~~l~~~~vviI~GeTGSGKTTqvPq~ 70 (764)
-+.|-+.+..+.++++.|+.||||||.+=.+
T Consensus 12 ~~~l~~~l~~~~~i~l~G~lGaGKTtl~~~l 42 (133)
T TIGR00150 12 GKAFAKPLDFGTVVLLKGDLGAGKTTLVQGL 42 (133)
T ss_pred HHHHHHhCCCCCEEEEEcCCCCCHHHHHHHH
Confidence 3456667778899999999999999877433
No 210
>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.
Probab=89.38 E-value=0.22 Score=46.61 Aligned_cols=33 Identities=21% Similarity=0.504 Sum_probs=26.0
Q ss_pred hHHHHHHHHHcCCeEEEEecCCCCccccHHHHH
Q 038192 39 MEQEIMEAVNDNSAVIICGETGCGKTTQVPQFL 71 (764)
Q Consensus 39 ~~~~Il~~l~~~~vviI~GeTGSGKTTqvPq~L 71 (764)
.-+.|-+.+..++|+++.|+-|+||||.+=-++
T Consensus 4 la~~l~~~l~~g~vi~L~GdLGaGKTtf~r~l~ 36 (123)
T PF02367_consen 4 LAKKLAQILKPGDVILLSGDLGAGKTTFVRGLA 36 (123)
T ss_dssp HHHHHHHHHSS-EEEEEEESTTSSHHHHHHHHH
T ss_pred HHHHHHHhCCCCCEEEEECCCCCCHHHHHHHHH
Confidence 345677888999999999999999998775443
No 211
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=89.32 E-value=0.15 Score=52.64 Aligned_cols=23 Identities=30% Similarity=0.499 Sum_probs=19.7
Q ss_pred HHcCCeEEEEecCCCCccccHHH
Q 038192 47 VNDNSAVIICGETGCGKTTQVPQ 69 (764)
Q Consensus 47 l~~~~vviI~GeTGSGKTTqvPq 69 (764)
|+.+..|.|.|++||||||.+-.
T Consensus 28 i~~Ge~vaI~GpSGSGKSTLLni 50 (226)
T COG1136 28 IEAGEFVAIVGPSGSGKSTLLNL 50 (226)
T ss_pred EcCCCEEEEECCCCCCHHHHHHH
Confidence 46788999999999999998653
No 212
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=89.27 E-value=0.27 Score=54.89 Aligned_cols=22 Identities=41% Similarity=0.681 Sum_probs=17.7
Q ss_pred HcCCeEEEEecCCCCccccHHH
Q 038192 48 NDNSAVIICGETGCGKTTQVPQ 69 (764)
Q Consensus 48 ~~~~vviI~GeTGSGKTTqvPq 69 (764)
..+-.++|+|+|||||||.+--
T Consensus 147 ~~~GlilI~G~TGSGKTT~l~a 168 (372)
T TIGR02525 147 PAAGLGLICGETGSGKSTLAAS 168 (372)
T ss_pred hcCCEEEEECCCCCCHHHHHHH
Confidence 3455789999999999998733
No 213
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=89.23 E-value=0.28 Score=52.05 Aligned_cols=33 Identities=21% Similarity=0.279 Sum_probs=27.3
Q ss_pred hhhHHHHHHHHHcCCeEEEEecCCCCccccHHH
Q 038192 37 VMMEQEIMEAVNDNSAVIICGETGCGKTTQVPQ 69 (764)
Q Consensus 37 ~~~~~~Il~~l~~~~vviI~GeTGSGKTTqvPq 69 (764)
....+.++..+..+..+++.|++|||||+..-.
T Consensus 8 ~~l~~~~l~~l~~g~~vLL~G~~GtGKT~lA~~ 40 (262)
T TIGR02640 8 KRVTSRALRYLKSGYPVHLRGPAGTGKTTLAMH 40 (262)
T ss_pred HHHHHHHHHHHhcCCeEEEEcCCCCCHHHHHHH
Confidence 345677889999999899999999999976643
No 214
>PF13173 AAA_14: AAA domain
Probab=89.17 E-value=0.27 Score=46.04 Aligned_cols=27 Identities=30% Similarity=0.438 Sum_probs=23.2
Q ss_pred cCCeEEEEecCCCCccccHHHHHHHhc
Q 038192 49 DNSAVIICGETGCGKTTQVPQFLFEAG 75 (764)
Q Consensus 49 ~~~vviI~GeTGSGKTTqvPq~Lle~~ 75 (764)
|+++++|.|+.||||||.+=|++-+..
T Consensus 1 n~~~~~l~G~R~vGKTtll~~~~~~~~ 27 (128)
T PF13173_consen 1 NRKIIILTGPRGVGKTTLLKQLAKDLL 27 (128)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhc
Confidence 568999999999999999999876543
No 215
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=89.08 E-value=0.55 Score=53.37 Aligned_cols=57 Identities=18% Similarity=0.267 Sum_probs=39.8
Q ss_pred CeEEEEecCCCCccccHHHHHHHhccCCCCCCCCCceEEEecccHHHHHHHHHHHHHHhCC
Q 038192 51 SAVIICGETGCGKTTQVPQFLFEAGFGSNRCSSRSGRIGVTQPRRVAVLATAKRVAFELGL 111 (764)
Q Consensus 51 ~vviI~GeTGSGKTTqvPq~Lle~~~~~~~~~~~~~~Ii~tQPRRiaAisvA~RVa~E~g~ 111 (764)
.+++++|.+||||||..-.+........+ ..+.++.+-++|.+|..-.++.+...|.
T Consensus 100 ~vi~~vG~~GsGKTTtaakLA~~l~~~~g----~kV~lV~~D~~R~~a~~QL~~~a~~~gv 156 (428)
T TIGR00959 100 TVILMVGLQGSGKTTTCGKLAYYLKKKQG----KKVLLVACDLYRPAAIEQLKVLGQQVGV 156 (428)
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHhCC----CeEEEEeccccchHHHHHHHHHHHhcCC
Confidence 47889999999999987665543211111 1367888999999988766667765554
No 216
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=89.06 E-value=0.56 Score=50.13 Aligned_cols=56 Identities=21% Similarity=0.291 Sum_probs=36.2
Q ss_pred CCeEEEEecCCCCccccHHHHHHHhccCCCCCCCCCceEEEecccHHHHHHHHHHHHHHhC
Q 038192 50 NSAVIICGETGCGKTTQVPQFLFEAGFGSNRCSSRSGRIGVTQPRRVAVLATAKRVAFELG 110 (764)
Q Consensus 50 ~~vviI~GeTGSGKTTqvPq~Lle~~~~~~~~~~~~~~Ii~tQPRRiaAisvA~RVa~E~g 110 (764)
..+++++|++|+||||.+-..-...... + ....++.+-+-|.+|..-.+..+..+|
T Consensus 72 ~~vi~l~G~~G~GKTTt~akLA~~l~~~-g----~~V~li~~D~~r~~a~~ql~~~~~~~~ 127 (272)
T TIGR00064 72 PNVILFVGVNGVGKTTTIAKLANKLKKQ-G----KSVLLAAGDTFRAAAIEQLEEWAKRLG 127 (272)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHhc-C----CEEEEEeCCCCCHHHHHHHHHHHHhCC
Confidence 3578889999999999755543221111 1 124566667888888766666666665
No 217
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=88.98 E-value=4.2 Score=49.45 Aligned_cols=73 Identities=23% Similarity=0.248 Sum_probs=44.5
Q ss_pred CCceEEEEecCcccccCCCCC--eEEEEeCCcccceeeccCC----------CccccceeeccHH--hHHHhccccCCCC
Q 038192 460 EGERLVVVSTNVAETSLTIPG--IKYVVDTGREKVKKYNSAN----------GIESYEIQWISKA--SAAQRAGRAGRTA 525 (764)
Q Consensus 460 ~g~rKVIlsTNIAEtSITIpd--V~~VID~G~~K~~~yd~~~----------~~~~l~~~~iSka--sa~QR~GRAGR~~ 525 (764)
.|...|+++|.-.--||++|| .++||=.|++-..--||.. |-+.+...-.-+| -.+|=.||.=|..
T Consensus 583 ~~~~~VL~g~~sf~EGVD~pGd~l~~vII~kLPF~~p~dp~~~ar~~~~~~~g~~~F~~~~lP~A~~kl~Qg~GRlIRs~ 662 (697)
T PRK11747 583 EGEGSVLFGLQSFAEGLDLPGDYLTQVIITKIPFAVPDSPVEATLAEWLKSRGGNPFMEISVPDASFKLIQAVGRLIRSE 662 (697)
T ss_pred cCCCeEEEEeccccccccCCCCceEEEEEEcCCCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhccccccC
Confidence 456679999999999999986 7888877776432222211 1111111111122 2678889998876
Q ss_pred C--CEEEEc
Q 038192 526 P--GHCYRL 532 (764)
Q Consensus 526 ~--G~cyrL 532 (764)
. |+.+-|
T Consensus 663 ~D~G~i~il 671 (697)
T PRK11747 663 QDRGRVTIL 671 (697)
T ss_pred CceEEEEEE
Confidence 4 877633
No 218
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=88.79 E-value=0.15 Score=47.85 Aligned_cols=21 Identities=33% Similarity=0.528 Sum_probs=18.5
Q ss_pred HcCCeEEEEecCCCCccccHH
Q 038192 48 NDNSAVIICGETGCGKTTQVP 68 (764)
Q Consensus 48 ~~~~vviI~GeTGSGKTTqvP 68 (764)
..++++.|.|+.||||||.+-
T Consensus 9 ~~g~~~~i~G~nGsGKStLl~ 29 (137)
T PF00005_consen 9 KPGEIVAIVGPNGSGKSTLLK 29 (137)
T ss_dssp ETTSEEEEEESTTSSHHHHHH
T ss_pred cCCCEEEEEccCCCcccccee
Confidence 457899999999999999875
No 219
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=88.73 E-value=0.38 Score=55.64 Aligned_cols=30 Identities=27% Similarity=0.437 Sum_probs=21.7
Q ss_pred HHHHHHHcC-CeEEEEecCCCCccccHHHHH
Q 038192 42 EIMEAVNDN-SAVIICGETGCGKTTQVPQFL 71 (764)
Q Consensus 42 ~Il~~l~~~-~vviI~GeTGSGKTTqvPq~L 71 (764)
.+..++... -+++|+|+|||||||.+--+|
T Consensus 233 ~l~~~~~~~~GlilitGptGSGKTTtL~a~L 263 (486)
T TIGR02533 233 RFERLIRRPHGIILVTGPTGSGKTTTLYAAL 263 (486)
T ss_pred HHHHHHhcCCCEEEEEcCCCCCHHHHHHHHH
Confidence 444455544 478999999999999885443
No 220
>PRK13764 ATPase; Provisional
Probab=88.70 E-value=0.46 Score=56.08 Aligned_cols=32 Identities=31% Similarity=0.494 Sum_probs=22.7
Q ss_pred HHHHHH-HcCCeEEEEecCCCCccccHHHHHHHh
Q 038192 42 EIMEAV-NDNSAVIICGETGCGKTTQVPQFLFEA 74 (764)
Q Consensus 42 ~Il~~l-~~~~vviI~GeTGSGKTTqvPq~Lle~ 74 (764)
.+++.+ ..+..++|+|+|||||||.+ +-|++.
T Consensus 248 ~l~~~l~~~~~~ILIsG~TGSGKTTll-~AL~~~ 280 (602)
T PRK13764 248 KLKERLEERAEGILIAGAPGAGKSTFA-QALAEF 280 (602)
T ss_pred HHHHHHHhcCCEEEEECCCCCCHHHHH-HHHHHH
Confidence 344544 44567999999999999977 444443
No 221
>PRK10436 hypothetical protein; Provisional
Probab=88.65 E-value=0.43 Score=54.83 Aligned_cols=30 Identities=27% Similarity=0.484 Sum_probs=21.9
Q ss_pred HHHHHHH-cCCeEEEEecCCCCccccHHHHH
Q 038192 42 EIMEAVN-DNSAVIICGETGCGKTTQVPQFL 71 (764)
Q Consensus 42 ~Il~~l~-~~~vviI~GeTGSGKTTqvPq~L 71 (764)
.+.+++. .+-.++|+|+|||||||.+-..|
T Consensus 209 ~l~~~~~~~~GliLvtGpTGSGKTTtL~a~l 239 (462)
T PRK10436 209 QFRQALQQPQGLILVTGPTGSGKTVTLYSAL 239 (462)
T ss_pred HHHHHHHhcCCeEEEECCCCCChHHHHHHHH
Confidence 4445554 34578999999999999885444
No 222
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=88.63 E-value=0.79 Score=55.96 Aligned_cols=61 Identities=18% Similarity=0.135 Sum_probs=41.2
Q ss_pred CchhhHHHHHHHHHc-CCeEEEEecCCCCccccHHHHHHHhccCCCCCCCCCceEEEecccHHHHHHHH
Q 038192 35 PIVMMEQEIMEAVND-NSAVIICGETGCGKTTQVPQFLFEAGFGSNRCSSRSGRIGVTQPRRVAVLATA 102 (764)
Q Consensus 35 Pi~~~~~~Il~~l~~-~~vviI~GeTGSGKTTqvPq~Lle~~~~~~~~~~~~~~Ii~tQPRRiaAisvA 102 (764)
.....|.+.+..+.. +++++|+|.+|+||||.+=..+ +.....+ .+|+.+-|+-.||..+.
T Consensus 352 ~Ls~~Q~~Av~~i~~s~~~~il~G~aGTGKTtll~~i~-~~~~~~g------~~V~~~ApTg~Aa~~L~ 413 (744)
T TIGR02768 352 RLSEEQYEAVRHVTGSGDIAVVVGRAGTGKSTMLKAAR-EAWEAAG------YRVIGAALSGKAAEGLQ 413 (744)
T ss_pred CCCHHHHHHHHHHhcCCCEEEEEecCCCCHHHHHHHHH-HHHHhCC------CeEEEEeCcHHHHHHHH
Confidence 344555556666554 6899999999999998766543 2211111 47888999988886554
No 223
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=88.56 E-value=0.4 Score=52.15 Aligned_cols=28 Identities=39% Similarity=0.591 Sum_probs=22.3
Q ss_pred HHHHcCCeEEEEecCCCCccccHHHHHHH
Q 038192 45 EAVNDNSAVIICGETGCGKTTQVPQFLFE 73 (764)
Q Consensus 45 ~~l~~~~vviI~GeTGSGKTTqvPq~Lle 73 (764)
-+++.+..++|+|+|||||||.+-. |+.
T Consensus 139 ~~v~~~~~ili~G~tGsGKTTll~a-l~~ 166 (308)
T TIGR02788 139 LAIASRKNIIISGGTGSGKTTFLKS-LVD 166 (308)
T ss_pred HHhhCCCEEEEECCCCCCHHHHHHH-HHc
Confidence 3567788999999999999998843 443
No 224
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=88.56 E-value=0.26 Score=46.46 Aligned_cols=22 Identities=32% Similarity=0.670 Sum_probs=18.1
Q ss_pred eEEEEecCCCCccccHHHHHHH
Q 038192 52 AVIICGETGCGKTTQVPQFLFE 73 (764)
Q Consensus 52 vviI~GeTGSGKTTqvPq~Lle 73 (764)
|++++|.+||||||.+=++.-.
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~ 22 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKR 22 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999987766533
No 225
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=88.55 E-value=0.51 Score=48.62 Aligned_cols=29 Identities=41% Similarity=0.579 Sum_probs=25.6
Q ss_pred cCCeEEEEecCCCCccccHHHHHHHhccC
Q 038192 49 DNSAVIICGETGCGKTTQVPQFLFEAGFG 77 (764)
Q Consensus 49 ~~~vviI~GeTGSGKTTqvPq~Lle~~~~ 77 (764)
.+.+++|.|++|||||+..-||+++....
T Consensus 18 ~gs~~li~G~~GsGKT~l~~q~l~~~~~~ 46 (226)
T PF06745_consen 18 KGSVVLISGPPGSGKTTLALQFLYNGLKN 46 (226)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHhhhh
Confidence 47899999999999999999999987543
No 226
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=88.48 E-value=0.45 Score=54.44 Aligned_cols=27 Identities=33% Similarity=0.658 Sum_probs=21.3
Q ss_pred cCCeEEEEecCCCCccccHHHHHHHhc
Q 038192 49 DNSAVIICGETGCGKTTQVPQFLFEAG 75 (764)
Q Consensus 49 ~~~vviI~GeTGSGKTTqvPq~Lle~~ 75 (764)
.+++++|+|++||||||.|--.--|.+
T Consensus 109 ~~~iLLltGPsGcGKSTtvkvLskelg 135 (634)
T KOG1970|consen 109 GSRILLLTGPSGCGKSTTVKVLSKELG 135 (634)
T ss_pred CceEEEEeCCCCCCchhHHHHHHHhhC
Confidence 468999999999999998765544443
No 227
>PRK11054 helD DNA helicase IV; Provisional
Probab=88.40 E-value=1.1 Score=54.17 Aligned_cols=69 Identities=19% Similarity=0.289 Sum_probs=48.4
Q ss_pred CCchhhHHHHHHHHHcCCeEEEEecCCCCccccHHH---HHHHhccCCCCCCCCCceEEEecccHHHHHHHHHHHHHHhC
Q 038192 34 LPIVMMEQEIMEAVNDNSAVIICGETGCGKTTQVPQ---FLFEAGFGSNRCSSRSGRIGVTQPRRVAVLATAKRVAFELG 110 (764)
Q Consensus 34 LPi~~~~~~Il~~l~~~~vviI~GeTGSGKTTqvPq---~Lle~~~~~~~~~~~~~~Ii~tQPRRiaAisvA~RVa~E~g 110 (764)
-|....+.+.+.. ....++|.|..||||||.+-- +|++.+.. .+.+|+++-.+|-||..+.+|+....|
T Consensus 195 ~~L~~~Q~~av~~--~~~~~lV~agaGSGKT~vl~~r~ayLl~~~~~------~~~~IL~ltft~~AA~em~eRL~~~lg 266 (684)
T PRK11054 195 SPLNPSQARAVVN--GEDSLLVLAGAGSGKTSVLVARAGWLLARGQA------QPEQILLLAFGRQAAEEMDERIRERLG 266 (684)
T ss_pred CCCCHHHHHHHhC--CCCCeEEEEeCCCCHHHHHHHHHHHHHHhCCC------CHHHeEEEeccHHHHHHHHHHHHHhcC
Confidence 4566655555543 234468888999999986543 55554322 235899999999999999999987654
No 228
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=88.33 E-value=0.38 Score=50.19 Aligned_cols=28 Identities=29% Similarity=0.541 Sum_probs=25.1
Q ss_pred HcCCeEEEEecCCCCccccHHHHHHHhc
Q 038192 48 NDNSAVIICGETGCGKTTQVPQFLFEAG 75 (764)
Q Consensus 48 ~~~~vviI~GeTGSGKTTqvPq~Lle~~ 75 (764)
..+.+++|.|++||||||..-||+++..
T Consensus 19 ~~gs~~lI~G~pGsGKT~la~~~l~~~~ 46 (237)
T TIGR03877 19 PERNVVLLSGGPGTGKSIFSQQFLWNGL 46 (237)
T ss_pred cCCeEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 3478999999999999999999999865
No 229
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=88.26 E-value=0.79 Score=48.59 Aligned_cols=28 Identities=29% Similarity=0.336 Sum_probs=24.7
Q ss_pred cCCeEEEEecCCCCccccHHHHHHHhcc
Q 038192 49 DNSAVIICGETGCGKTTQVPQFLFEAGF 76 (764)
Q Consensus 49 ~~~vviI~GeTGSGKTTqvPq~Lle~~~ 76 (764)
.+.+++|+|++||||||..-||+.+.+.
T Consensus 35 ~gs~~lI~G~pGtGKT~l~~qf~~~~a~ 62 (259)
T TIGR03878 35 AYSVINITGVSDTGKSLMVEQFAVTQAS 62 (259)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 4789999999999999999999887543
No 230
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=88.15 E-value=0.2 Score=52.18 Aligned_cols=22 Identities=41% Similarity=0.712 Sum_probs=19.2
Q ss_pred HHcCCeEEEEecCCCCccccHH
Q 038192 47 VNDNSAVIICGETGCGKTTQVP 68 (764)
Q Consensus 47 l~~~~vviI~GeTGSGKTTqvP 68 (764)
+..+..|-|.|++||||||.+=
T Consensus 26 v~~GEfvsilGpSGcGKSTLLr 47 (248)
T COG1116 26 VEKGEFVAILGPSGCGKSTLLR 47 (248)
T ss_pred ECCCCEEEEECCCCCCHHHHHH
Confidence 5678999999999999999764
No 231
>PRK10919 ATP-dependent DNA helicase Rep; Provisional
Probab=88.03 E-value=0.8 Score=55.32 Aligned_cols=64 Identities=25% Similarity=0.368 Sum_probs=44.7
Q ss_pred hHHHHHHHHHcCCeEEEEecCCCCccccHHH---HHHHh-ccCCCCCCCCCceEEEecccHHHHHHHHHHHHHHhCC
Q 038192 39 MEQEIMEAVNDNSAVIICGETGCGKTTQVPQ---FLFEA-GFGSNRCSSRSGRIGVTQPRRVAVLATAKRVAFELGL 111 (764)
Q Consensus 39 ~~~~Il~~l~~~~vviI~GeTGSGKTTqvPq---~Lle~-~~~~~~~~~~~~~Ii~tQPRRiaAisvA~RVa~E~g~ 111 (764)
.|.+++... .+. ++|.|..|||||+.+-. +|++. +. .+.+|+|+-.+|-||..+-+|+....|.
T Consensus 6 ~Q~~av~~~-~g~-~lV~AgpGSGKT~vL~~Ria~Li~~~~v-------~p~~IL~lTFT~kAA~em~~Rl~~~l~~ 73 (672)
T PRK10919 6 GQQQAVEFV-TGP-CLVLAGAGSGKTRVITNKIAHLIRGCGY-------QARHIAAVTFTNKAAREMKERVAQTLGR 73 (672)
T ss_pred HHHHHHhCC-CCC-EEEEecCCCCHHHHHHHHHHHHHHhcCC-------CHHHeeeEechHHHHHHHHHHHHHHhCc
Confidence 344455543 234 56778899999987655 34443 22 2358999999999999999999987763
No 232
>PHA03311 helicase-primase subunit BBLF4; Provisional
Probab=87.94 E-value=0.51 Score=55.89 Aligned_cols=44 Identities=30% Similarity=0.379 Sum_probs=35.3
Q ss_pred CeEEEEecCCCCccccHHHHHHHhccCCCCCCCCCceEEEecccHHHHHHHHHHHH
Q 038192 51 SAVIICGETGCGKTTQVPQFLFEAGFGSNRCSSRSGRIGVTQPRRVAVLATAKRVA 106 (764)
Q Consensus 51 ~vviI~GeTGSGKTTqvPq~Lle~~~~~~~~~~~~~~Ii~tQPRRiaAisvA~RVa 106 (764)
.+++|+|.-|+||||.|- .|.+. .+.++|-|+++||..+...+.
T Consensus 72 s~~~itG~AGsGKst~i~-~l~~~-----------l~cvitg~T~vAAqN~~~~L~ 115 (828)
T PHA03311 72 SVYLITGTAGAGKSTSIQ-TLNEN-----------LDCVITGATRVAAQNLSAKLS 115 (828)
T ss_pred EEEEEecCCCCChHHHHH-HHHHh-----------cCEEEEcchHHHHHhhhcccc
Confidence 689999999999999874 45544 257799999999999876444
No 233
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=87.90 E-value=0.36 Score=47.31 Aligned_cols=31 Identities=23% Similarity=0.525 Sum_probs=24.3
Q ss_pred HHHHHHHHHcCCeEEEEecCCCCccccHHHHH
Q 038192 40 EQEIMEAVNDNSAVIICGETGCGKTTQVPQFL 71 (764)
Q Consensus 40 ~~~Il~~l~~~~vviI~GeTGSGKTTqvPq~L 71 (764)
-+++.+.+++ +++++.|++|.||||.+=..+
T Consensus 26 ~~~l~~~l~~-k~~vl~G~SGvGKSSLiN~L~ 56 (161)
T PF03193_consen 26 IEELKELLKG-KTSVLLGQSGVGKSSLINALL 56 (161)
T ss_dssp HHHHHHHHTT-SEEEEECSTTSSHHHHHHHHH
T ss_pred HHHHHHHhcC-CEEEEECCCCCCHHHHHHHHH
Confidence 3456666666 999999999999999876544
No 234
>PRK08233 hypothetical protein; Provisional
Probab=87.88 E-value=0.22 Score=49.06 Aligned_cols=20 Identities=30% Similarity=0.454 Sum_probs=17.0
Q ss_pred CeEEEEecCCCCccccHHHH
Q 038192 51 SAVIICGETGCGKTTQVPQF 70 (764)
Q Consensus 51 ~vviI~GeTGSGKTTqvPq~ 70 (764)
.+|.|.|.+||||||+.-+.
T Consensus 4 ~iI~I~G~~GsGKtTla~~L 23 (182)
T PRK08233 4 KIITIAAVSGGGKTTLTERL 23 (182)
T ss_pred eEEEEECCCCCCHHHHHHHH
Confidence 57889999999999987554
No 235
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=87.78 E-value=1.1 Score=47.12 Aligned_cols=27 Identities=33% Similarity=0.599 Sum_probs=20.8
Q ss_pred HHc-CCeEEEEecCCCCccccHHHHHHH
Q 038192 47 VND-NSAVIICGETGCGKTTQVPQFLFE 73 (764)
Q Consensus 47 l~~-~~vviI~GeTGSGKTTqvPq~Lle 73 (764)
+.. ...++|.|++||||||.+=.+.-+
T Consensus 39 ~~~~~~~~~l~G~~G~GKTtl~~~l~~~ 66 (269)
T TIGR03015 39 LSQREGFILITGEVGAGKTTLIRNLLKR 66 (269)
T ss_pred HhcCCCEEEEEcCCCCCHHHHHHHHHHh
Confidence 444 347899999999999988766544
No 236
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=87.69 E-value=0.22 Score=54.51 Aligned_cols=22 Identities=36% Similarity=0.812 Sum_probs=18.8
Q ss_pred HHcCCeEEEEecCCCCccccHH
Q 038192 47 VNDNSAVIICGETGCGKTTQVP 68 (764)
Q Consensus 47 l~~~~vviI~GeTGSGKTTqvP 68 (764)
|+.+..+++.|++||||||.+=
T Consensus 26 i~~Gef~vllGPSGcGKSTlLr 47 (338)
T COG3839 26 IEDGEFVVLLGPSGCGKSTLLR 47 (338)
T ss_pred EcCCCEEEEECCCCCCHHHHHH
Confidence 4667889999999999999754
No 237
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=87.52 E-value=0.77 Score=47.75 Aligned_cols=28 Identities=18% Similarity=0.376 Sum_probs=24.4
Q ss_pred HHcCCeEEEEecCCCCccccHHHHHHHh
Q 038192 47 VNDNSAVIICGETGCGKTTQVPQFLFEA 74 (764)
Q Consensus 47 l~~~~vviI~GeTGSGKTTqvPq~Lle~ 74 (764)
+..+.+++|.|++||||||..-|++.+.
T Consensus 21 i~~g~~~~i~G~~G~GKTtl~~~~~~~~ 48 (230)
T PRK08533 21 IPAGSLILIEGDESTGKSILSQRLAYGF 48 (230)
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 4557899999999999999989998864
No 238
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=87.47 E-value=0.51 Score=55.78 Aligned_cols=32 Identities=31% Similarity=0.524 Sum_probs=23.0
Q ss_pred HHHHHHHHHc-CCeEEEEecCCCCccccHHHHH
Q 038192 40 EQEIMEAVND-NSAVIICGETGCGKTTQVPQFL 71 (764)
Q Consensus 40 ~~~Il~~l~~-~~vviI~GeTGSGKTTqvPq~L 71 (764)
.+.+.+++.. +-.++|+|+|||||||.+--.|
T Consensus 305 ~~~l~~~~~~~~Glilv~G~tGSGKTTtl~a~l 337 (564)
T TIGR02538 305 KALFLEAIHKPQGMVLVTGPTGSGKTVSLYTAL 337 (564)
T ss_pred HHHHHHHHHhcCCeEEEECCCCCCHHHHHHHHH
Confidence 3445555554 4578899999999999874433
No 239
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=87.44 E-value=0.24 Score=49.37 Aligned_cols=23 Identities=35% Similarity=0.554 Sum_probs=19.7
Q ss_pred HHcCCeEEEEecCCCCccccHHH
Q 038192 47 VNDNSAVIICGETGCGKTTQVPQ 69 (764)
Q Consensus 47 l~~~~vviI~GeTGSGKTTqvPq 69 (764)
+..+.++.|.|+.||||||.+=.
T Consensus 18 i~~G~~~~l~G~nG~GKSTLl~~ 40 (176)
T cd03238 18 IPLNVLVVVTGVSGSGKSTLVNE 40 (176)
T ss_pred EcCCCEEEEECCCCCCHHHHHHH
Confidence 45688999999999999998843
No 240
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=87.42 E-value=0.34 Score=47.66 Aligned_cols=23 Identities=30% Similarity=0.628 Sum_probs=14.2
Q ss_pred cCCeEEEEecCCCCccccHHHHH
Q 038192 49 DNSAVIICGETGCGKTTQVPQFL 71 (764)
Q Consensus 49 ~~~vviI~GeTGSGKTTqvPq~L 71 (764)
..++++|.|+.|||||+.+=.++
T Consensus 23 ~~~~~ll~G~~G~GKT~ll~~~~ 45 (185)
T PF13191_consen 23 SPRNLLLTGESGSGKTSLLRALL 45 (185)
T ss_dssp ----EEE-B-TTSSHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHH
Confidence 35789999999999998766543
No 241
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=87.32 E-value=0.51 Score=50.46 Aligned_cols=30 Identities=27% Similarity=0.658 Sum_probs=23.7
Q ss_pred HHHH-HHcCCeEEEEecCCCCccccHHHHHH
Q 038192 43 IMEA-VNDNSAVIICGETGCGKTTQVPQFLF 72 (764)
Q Consensus 43 Il~~-l~~~~vviI~GeTGSGKTTqvPq~Ll 72 (764)
+++. +.+++-++++|+||||||+.+=.+|-
T Consensus 25 ll~~l~~~~~pvLl~G~~GtGKT~li~~~l~ 55 (272)
T PF12775_consen 25 LLDLLLSNGRPVLLVGPSGTGKTSLIQNFLS 55 (272)
T ss_dssp HHHHHHHCTEEEEEESSTTSSHHHHHHHHHH
T ss_pred HHHHHHHcCCcEEEECCCCCchhHHHHhhhc
Confidence 4443 56778899999999999998877663
No 242
>PRK05973 replicative DNA helicase; Provisional
Probab=87.30 E-value=0.46 Score=49.64 Aligned_cols=36 Identities=22% Similarity=0.281 Sum_probs=30.1
Q ss_pred HHHHHHHHcCCeEEEEecCCCCccccHHHHHHHhcc
Q 038192 41 QEIMEAVNDNSAVIICGETGCGKTTQVPQFLFEAGF 76 (764)
Q Consensus 41 ~~Il~~l~~~~vviI~GeTGSGKTTqvPq~Lle~~~ 76 (764)
+++.--+..++.++|.|++|+||||..-||+.+...
T Consensus 55 ~~l~GGl~~Gsl~LIaG~PG~GKT~lalqfa~~~a~ 90 (237)
T PRK05973 55 EELFSQLKPGDLVLLGARPGHGKTLLGLELAVEAMK 90 (237)
T ss_pred HHhcCCCCCCCEEEEEeCCCCCHHHHHHHHHHHHHh
Confidence 445566677899999999999999999999987653
No 243
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=87.26 E-value=0.35 Score=47.78 Aligned_cols=21 Identities=33% Similarity=0.610 Sum_probs=17.2
Q ss_pred CCeEEEEecCCCCccccHHHH
Q 038192 50 NSAVIICGETGCGKTTQVPQF 70 (764)
Q Consensus 50 ~~vviI~GeTGSGKTTqvPq~ 70 (764)
+++++|.|++||||||+.-..
T Consensus 1 g~ii~l~G~~GsGKsTl~~~L 21 (180)
T TIGR03263 1 GLLIVISGPSGVGKSTLVKAL 21 (180)
T ss_pred CcEEEEECCCCCCHHHHHHHH
Confidence 467899999999999975543
No 244
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only]
Probab=87.15 E-value=1.8 Score=53.44 Aligned_cols=90 Identities=23% Similarity=0.282 Sum_probs=76.3
Q ss_pred CCeEEEecCCCCCHHHHHhhhccCCCCce--EEEEecCcccccCCCCCeEEEEeCCcccceeeccCCCccccceeeccHH
Q 038192 435 GALCVLPLYAMLPAAAQLRVFEDVKEGER--LVVVSTNVAETSLTIPGIKYVVDTGREKVKKYNSANGIESYEIQWISKA 512 (764)
Q Consensus 435 ~~~~i~pLHs~l~~~eQ~~vf~~~~~g~r--KVIlsTNIAEtSITIpdV~~VID~G~~K~~~yd~~~~~~~l~~~~iSka 512 (764)
+++..+-|-|+-..++|+..+++|....| -.||||--.-.||.+-+..-|| .||..-+ +.=-|
T Consensus 1299 HgylY~RLDg~t~vEqRQaLmerFNaD~RIfcfILSTrSggvGiNLtgADTVv--------FYDsDwN-------PtMDa 1363 (1958)
T KOG0391|consen 1299 HGYLYVRLDGNTSVEQRQALMERFNADRRIFCFILSTRSGGVGINLTGADTVV--------FYDSDWN-------PTMDA 1363 (1958)
T ss_pred cceEEEEecCCccHHHHHHHHHHhcCCCceEEEEEeccCCccccccccCceEE--------EecCCCC-------chhhh
Confidence 56888899999999999999999987655 3589999999999999999999 6776544 34458
Q ss_pred hHHHhccccCCCCCCEEEEccCHHHhc
Q 038192 513 SAAQRAGRAGRTAPGHCYRLYSSAVFN 539 (764)
Q Consensus 513 sa~QR~GRAGR~~~G~cyrLys~~~~~ 539 (764)
.|+-|+-|-|+++.=+-|||+|+..-+
T Consensus 1364 QAQDrChRIGqtRDVHIYRLISe~TIE 1390 (1958)
T KOG0391|consen 1364 QAQDRCHRIGQTRDVHIYRLISERTIE 1390 (1958)
T ss_pred HHHHHHHhhcCccceEEEEeeccchHH
Confidence 899999999999999999999986554
No 245
>PRK04296 thymidine kinase; Provisional
Probab=87.06 E-value=0.49 Score=47.69 Aligned_cols=26 Identities=23% Similarity=0.309 Sum_probs=22.5
Q ss_pred CCeEEEEecCCCCccccHHHHHHHhc
Q 038192 50 NSAVIICGETGCGKTTQVPQFLFEAG 75 (764)
Q Consensus 50 ~~vviI~GeTGSGKTTqvPq~Lle~~ 75 (764)
+.+++++|++||||||..-+++....
T Consensus 2 g~i~litG~~GsGKTT~~l~~~~~~~ 27 (190)
T PRK04296 2 AKLEFIYGAMNSGKSTELLQRAYNYE 27 (190)
T ss_pred cEEEEEECCCCCHHHHHHHHHHHHHH
Confidence 45789999999999999999987654
No 246
>PRK00300 gmk guanylate kinase; Provisional
Probab=87.05 E-value=0.28 Score=49.69 Aligned_cols=24 Identities=29% Similarity=0.580 Sum_probs=19.5
Q ss_pred HcCCeEEEEecCCCCccccHHHHH
Q 038192 48 NDNSAVIICGETGCGKTTQVPQFL 71 (764)
Q Consensus 48 ~~~~vviI~GeTGSGKTTqvPq~L 71 (764)
..+.+++|.|++||||||..-...
T Consensus 3 ~~g~~i~i~G~sGsGKstl~~~l~ 26 (205)
T PRK00300 3 RRGLLIVLSGPSGAGKSTLVKALL 26 (205)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHH
Confidence 457889999999999999765543
No 247
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=86.86 E-value=0.82 Score=48.63 Aligned_cols=70 Identities=24% Similarity=0.236 Sum_probs=46.1
Q ss_pred hHHHHHHHHHc----CCeEEEEecCCCCccccHHHHHHHhccCCCCCCCCCceEEEecccHHHHHHHHHHHHHHhCCC
Q 038192 39 MEQEIMEAVND----NSAVIICGETGCGKTTQVPQFLFEAGFGSNRCSSRSGRIGVTQPRRVAVLATAKRVAFELGLH 112 (764)
Q Consensus 39 ~~~~Il~~l~~----~~vviI~GeTGSGKTTqvPq~Lle~~~~~~~~~~~~~~Ii~tQPRRiaAisvA~RVa~E~g~~ 112 (764)
.-++|.+.|.. .++|.|.|..|+||||..-++..+.... .. ..+.+.+.-.+......+.+.++..++..
T Consensus 4 ~~~~l~~~L~~~~~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~-~~---f~~v~wv~~~~~~~~~~~~~~i~~~l~~~ 77 (287)
T PF00931_consen 4 EIEKLKDWLLDNSNEVRVVAIVGMGGIGKTTLARQVARDLRIK-NR---FDGVIWVSLSKNPSLEQLLEQILRQLGEP 77 (287)
T ss_dssp HHHHHHHHHHTTTTSSEEEEEEESTTSSHHHHHHHHHCHHHHC-CC---CTEEEEEEEES-SCCHHHHHHHHHHHTCC
T ss_pred HHHHHHHHhhCCCCCeEEEEEEcCCcCCcceeeeecccccccc-cc---ccccccccccccccccccccccccccccc
Confidence 34567777776 5689999999999999988877542211 11 12455555555444466777788888765
No 248
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=86.69 E-value=0.31 Score=44.43 Aligned_cols=24 Identities=29% Similarity=0.555 Sum_probs=20.0
Q ss_pred HcCCeEEEEecCCCCccccHHHHH
Q 038192 48 NDNSAVIICGETGCGKTTQVPQFL 71 (764)
Q Consensus 48 ~~~~vviI~GeTGSGKTTqvPq~L 71 (764)
..++.+.|.|++||||||.+-..+
T Consensus 13 ~~ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 13 YGKVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred cCCEEEEEEcCCCCCHHHHHHHhh
Confidence 456789999999999999877644
No 249
>cd01127 TrwB Bacterial conjugation protein TrwB, ATP binding domain. TrwB is a homohexamer encoded by conjugative plasmids in Gram-negative bacteria. TrwB also has an all alpha domain which has been hypothesized to be responsible for DNA binding. TrwB is a component of Type IV secretion and is responsible for the horizontal transfer of DNA between bacteria.
Probab=86.64 E-value=0.51 Score=53.50 Aligned_cols=47 Identities=26% Similarity=0.331 Sum_probs=33.3
Q ss_pred HHHHHHcCCeEEEEecCCCCccccHHHHHHHhccCCCCCCCCCceEEEecccHHH
Q 038192 43 IMEAVNDNSAVIICGETGCGKTTQVPQFLFEAGFGSNRCSSRSGRIGVTQPRRVA 97 (764)
Q Consensus 43 Il~~l~~~~vviI~GeTGSGKTTqvPq~Lle~~~~~~~~~~~~~~Ii~tQPRRia 97 (764)
|..... ++.++|.|.||||||+.+++++..... . ..+++|+-|....
T Consensus 36 ~~~~~~-~~h~~i~g~tGsGKt~~i~~l~~~~~~-~------~~~~vi~D~kg~~ 82 (410)
T cd01127 36 FPKDAE-EAHTMIIGTTGTGKTTQIRELLASIRA-R------GDRAIIYDPNGGF 82 (410)
T ss_pred CCcchh-hccEEEEcCCCCCHHHHHHHHHHHHHh-c------CCCEEEEeCCcch
Confidence 333333 456889999999999999987755322 1 1478899998764
No 250
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=86.62 E-value=0.3 Score=44.86 Aligned_cols=15 Identities=47% Similarity=0.587 Sum_probs=12.9
Q ss_pred EEEEecCCCCccccH
Q 038192 53 VIICGETGCGKTTQV 67 (764)
Q Consensus 53 viI~GeTGSGKTTqv 67 (764)
|+|+|.+||||||..
T Consensus 1 I~i~G~~GsGKtTia 15 (129)
T PF13238_consen 1 IGISGIPGSGKTTIA 15 (129)
T ss_dssp EEEEESTTSSHHHHH
T ss_pred CEEECCCCCCHHHHH
Confidence 689999999999753
No 251
>COG5008 PilU Tfp pilus assembly protein, ATPase PilU [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=86.44 E-value=0.46 Score=49.73 Aligned_cols=25 Identities=36% Similarity=0.648 Sum_probs=20.6
Q ss_pred HHcCCeEEEEecCCCCccccHHHHH
Q 038192 47 VNDNSAVIICGETGCGKTTQVPQFL 71 (764)
Q Consensus 47 l~~~~vviI~GeTGSGKTTqvPq~L 71 (764)
+...-.|||.|.|||||||-+.-++
T Consensus 124 ~~kRGLviiVGaTGSGKSTtmAaMi 148 (375)
T COG5008 124 LAKRGLVIIVGATGSGKSTTMAAMI 148 (375)
T ss_pred cccCceEEEECCCCCCchhhHHHHh
Confidence 3445678999999999999988766
No 252
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=86.28 E-value=1.2 Score=55.61 Aligned_cols=63 Identities=16% Similarity=0.139 Sum_probs=41.7
Q ss_pred CCCchhhHHHHHHHHHc-CCeEEEEecCCCCccccHHHHHHHhccCCCCCCCCCceEEEecccHHHHHHHH
Q 038192 33 DLPIVMMEQEIMEAVND-NSAVIICGETGCGKTTQVPQFLFEAGFGSNRCSSRSGRIGVTQPRRVAVLATA 102 (764)
Q Consensus 33 ~LPi~~~~~~Il~~l~~-~~vviI~GeTGSGKTTqvPq~Lle~~~~~~~~~~~~~~Ii~tQPRRiaAisvA 102 (764)
.+.....|.+.+..+.. +++++|+|..|+||||.+- .+.+.....+ .+|+.+-|+-.||..+.
T Consensus 344 g~~Ls~eQr~Av~~il~s~~v~vv~G~AGTGKTT~l~-~~~~~~e~~G------~~V~~~ApTGkAA~~L~ 407 (988)
T PRK13889 344 GLVLSGEQADALAHVTDGRDLGVVVGYAGTGKSAMLG-VAREAWEAAG------YEVRGAALSGIAAENLE 407 (988)
T ss_pred CCCCCHHHHHHHHHHhcCCCeEEEEeCCCCCHHHHHH-HHHHHHHHcC------CeEEEecCcHHHHHHHh
Confidence 34445555556665554 6799999999999999753 3333211111 47888999998886654
No 253
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=86.03 E-value=0.38 Score=50.02 Aligned_cols=34 Identities=15% Similarity=0.174 Sum_probs=27.8
Q ss_pred HHHHHHcCCeEEEEecCCCCccccHHHHHHHhcc
Q 038192 43 IMEAVNDNSAVIICGETGCGKTTQVPQFLFEAGF 76 (764)
Q Consensus 43 Il~~l~~~~vviI~GeTGSGKTTqvPq~Lle~~~ 76 (764)
++.-+..+++++|+|+||+||||..-|+++....
T Consensus 6 ~~~Gl~~G~l~lI~G~~G~GKT~~~~~~~~~~~~ 39 (242)
T cd00984 6 LTGGLQPGDLIIIAARPSMGKTAFALNIAENIAK 39 (242)
T ss_pred hhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 4444567889999999999999999999887654
No 254
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=86.02 E-value=0.34 Score=49.40 Aligned_cols=22 Identities=32% Similarity=0.703 Sum_probs=19.1
Q ss_pred HHcCCeEEEEecCCCCccccHH
Q 038192 47 VNDNSAVIICGETGCGKTTQVP 68 (764)
Q Consensus 47 l~~~~vviI~GeTGSGKTTqvP 68 (764)
|..|+|+-+.|+.||||||.+=
T Consensus 30 i~~~~VTAlIGPSGcGKST~LR 51 (253)
T COG1117 30 IPKNKVTALIGPSGCGKSTLLR 51 (253)
T ss_pred ccCCceEEEECCCCcCHHHHHH
Confidence 4678999999999999999764
No 255
>COG0630 VirB11 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=85.90 E-value=0.58 Score=51.02 Aligned_cols=33 Identities=33% Similarity=0.512 Sum_probs=27.2
Q ss_pred HHHHHHHHHcCCeEEEEecCCCCccccHHHHHH
Q 038192 40 EQEIMEAVNDNSAVIICGETGCGKTTQVPQFLF 72 (764)
Q Consensus 40 ~~~Il~~l~~~~vviI~GeTGSGKTTqvPq~Ll 72 (764)
-.-+-.+++....++|+|+|||||||.+=..+.
T Consensus 133 ~ayL~~~ie~~~siii~G~t~sGKTt~lnall~ 165 (312)
T COG0630 133 AAYLWLAIEARKSIIICGGTASGKTTLLNALLD 165 (312)
T ss_pred HHHHHHHHHcCCcEEEECCCCCCHHHHHHHHHH
Confidence 334777889999999999999999998766554
No 256
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=85.90 E-value=0.32 Score=40.39 Aligned_cols=19 Identities=32% Similarity=0.602 Sum_probs=15.4
Q ss_pred eEEEEecCCCCccccHHHH
Q 038192 52 AVIICGETGCGKTTQVPQF 70 (764)
Q Consensus 52 vviI~GeTGSGKTTqvPq~ 70 (764)
++.|+|..||||||..-.+
T Consensus 1 ~i~i~G~~gsGKst~~~~l 19 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKL 19 (69)
T ss_pred CEEEECCCCCCHHHHHHHH
Confidence 4788999999999976543
No 257
>KOG2373 consensus Predicted mitochondrial DNA helicase twinkle [Replication, recombination and repair]
Probab=85.83 E-value=0.51 Score=51.03 Aligned_cols=27 Identities=26% Similarity=0.437 Sum_probs=23.2
Q ss_pred CCeEEEEecCCCCccccHHHHHHHhcc
Q 038192 50 NSAVIICGETGCGKTTQVPQFLFEAGF 76 (764)
Q Consensus 50 ~~vviI~GeTGSGKTTqvPq~Lle~~~ 76 (764)
+..+|++|+|||||||-+--|-|+-..
T Consensus 273 GElTvlTGpTGsGKTTFlsEYsLDL~~ 299 (514)
T KOG2373|consen 273 GELTVLTGPTGSGKTTFLSEYSLDLFT 299 (514)
T ss_pred CceEEEecCCCCCceeEehHhhHHHHh
Confidence 457899999999999999999888543
No 258
>COG1702 PhoH Phosphate starvation-inducible protein PhoH, predicted ATPase [Signal transduction mechanisms]
Probab=85.70 E-value=0.77 Score=49.91 Aligned_cols=67 Identities=33% Similarity=0.417 Sum_probs=48.0
Q ss_pred CCchhhHHHHHHHHHcCCeEEEEecCCCCccc-cHHHHHHHhccCCCCCCCCCceEEEecccHHHHHHHHHHHHHHhCCC
Q 038192 34 LPIVMMEQEIMEAVNDNSAVIICGETGCGKTT-QVPQFLFEAGFGSNRCSSRSGRIGVTQPRRVAVLATAKRVAFELGLH 112 (764)
Q Consensus 34 LPi~~~~~~Il~~l~~~~vviI~GeTGSGKTT-qvPq~Lle~~~~~~~~~~~~~~Ii~tQPRRiaAisvA~RVa~E~g~~ 112 (764)
.|-..-|..-++++..+++++..|+-|+|||- |++.-+- . +.. +.-.+|+.|.| |-|.|++
T Consensus 127 ~~kt~~Q~~y~eai~~~di~fGiGpAGTGKTyLava~av~-a-l~~----~~v~rIiLtRP------------aVEAGEk 188 (348)
T COG1702 127 IPKTPGQNMYPEAIEEHDIVFGIGPAGTGKTYLAVAKAVD-A-LGA----GQVRRIILTRP------------AVEAGEK 188 (348)
T ss_pred EecChhHHHHHHHHHhcCeeeeecccccCChhhhHHhHhh-h-hhh----cccceeeecCc------------chhcCcc
Confidence 46667788999999999999999999999993 3333221 1 111 11258999999 4588888
Q ss_pred CCCEee
Q 038192 113 LGKEVG 118 (764)
Q Consensus 113 lG~~VG 118 (764)
+|-.-|
T Consensus 189 lGfLPG 194 (348)
T COG1702 189 LGFLPG 194 (348)
T ss_pred cCcCCC
Confidence 885544
No 259
>TIGR01075 uvrD DNA helicase II. Designed to identify uvrD members of the uvrD/rep subfamily.
Probab=85.64 E-value=1.5 Score=53.42 Aligned_cols=63 Identities=17% Similarity=0.219 Sum_probs=43.4
Q ss_pred HHHHHHHHHcCCeEEEEecCCCCccccHHHHH---HHhccCCCCCCCCCceEEEecccHHHHHHHHHHHHHHhC
Q 038192 40 EQEIMEAVNDNSAVIICGETGCGKTTQVPQFL---FEAGFGSNRCSSRSGRIGVTQPRRVAVLATAKRVAFELG 110 (764)
Q Consensus 40 ~~~Il~~l~~~~vviI~GeTGSGKTTqvPq~L---le~~~~~~~~~~~~~~Ii~tQPRRiaAisvA~RVa~E~g 110 (764)
|.+++..- ...++|.|..|||||+.+-.-+ ++..-. .+.+|+++-.+|-||-.+.+|+.+..+
T Consensus 9 Q~~av~~~--~g~~lV~AgaGSGKT~~L~~Ria~Li~~~~v------~p~~IL~lTFTnkAA~em~~Rl~~~~~ 74 (715)
T TIGR01075 9 QREAVAAP--PGNLLVLAGAGSGKTRVLTHRIAWLLSVENA------SPHSIMAVTFTNKAAAEMRHRIGALLG 74 (715)
T ss_pred HHHHHcCC--CCCEEEEecCCCCHHHHHHHHHHHHHHcCCC------CHHHeEeeeccHHHHHHHHHHHHHHhc
Confidence 34444432 2346788899999998766543 332111 245899999999999999999988665
No 260
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=85.62 E-value=0.35 Score=44.62 Aligned_cols=17 Identities=35% Similarity=0.626 Sum_probs=13.9
Q ss_pred EEEEecCCCCccccHHH
Q 038192 53 VIICGETGCGKTTQVPQ 69 (764)
Q Consensus 53 viI~GeTGSGKTTqvPq 69 (764)
+++.|++||||||.+=.
T Consensus 1 ill~G~~G~GKT~l~~~ 17 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARA 17 (132)
T ss_dssp EEEESSTTSSHHHHHHH
T ss_pred CEEECcCCCCeeHHHHH
Confidence 58899999999976543
No 261
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=85.56 E-value=0.37 Score=48.39 Aligned_cols=23 Identities=35% Similarity=0.742 Sum_probs=19.4
Q ss_pred HHHcCCeEEEEecCCCCccccHH
Q 038192 46 AVNDNSAVIICGETGCGKTTQVP 68 (764)
Q Consensus 46 ~l~~~~vviI~GeTGSGKTTqvP 68 (764)
.|..++.|++.|+.||||||.+-
T Consensus 27 ~ia~ge~vv~lGpSGcGKTTLLn 49 (259)
T COG4525 27 TIASGELVVVLGPSGCGKTTLLN 49 (259)
T ss_pred eecCCCEEEEEcCCCccHHHHHH
Confidence 35678899999999999998654
No 262
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=85.51 E-value=0.37 Score=45.46 Aligned_cols=17 Identities=41% Similarity=0.694 Sum_probs=13.9
Q ss_pred EEEEecCCCCccccHHH
Q 038192 53 VIICGETGCGKTTQVPQ 69 (764)
Q Consensus 53 viI~GeTGSGKTTqvPq 69 (764)
|++.|++|||||+.+=+
T Consensus 2 vlL~G~~G~GKt~l~~~ 18 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARE 18 (139)
T ss_dssp EEEEESSSSSHHHHHHH
T ss_pred EEEECCCCCCHHHHHHH
Confidence 78999999999965433
No 263
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=85.49 E-value=13 Score=44.73 Aligned_cols=112 Identities=20% Similarity=0.219 Sum_probs=63.9
Q ss_pred CCCCHHHHHhhhccCCCCceEEEEecCcccccCCCCCe--EEEEeCCcccce----------eeccCCCccccceeec--
Q 038192 444 AMLPAAAQLRVFEDVKEGERLVVVSTNVAETSLTIPGI--KYVVDTGREKVK----------KYNSANGIESYEIQWI-- 509 (764)
Q Consensus 444 s~l~~~eQ~~vf~~~~~g~rKVIlsTNIAEtSITIpdV--~~VID~G~~K~~----------~yd~~~~~~~l~~~~i-- 509 (764)
|.-+..+..+-|....++ -++|+|.-..-||++|+= +.||=.|++-.. .|+...+-..+...-.
T Consensus 512 ~~~~~~~~l~~f~~~~~~--~~lv~~gsf~EGVD~~g~~l~~vvI~~lPfp~p~dp~~~~r~~~~~~~g~~~f~~~~l~~ 589 (654)
T COG1199 512 GEDEREELLEKFKASGEG--LILVGGGSFWEGVDFPGDALRLVVIVGLPFPNPDDPLLKARLEFLKRLGGDPFEEFYLPP 589 (654)
T ss_pred CCCcHHHHHHHHHHhcCC--eEEEeeccccCcccCCCCCeeEEEEEecCCCCCCCHHHHHHHHHHHHhcCCCceEeehHH
Confidence 344444444555554444 799999999999999863 555545655432 2333333222332222
Q ss_pred cHHhHHHhccccCCCCC--CEEEEc---cCHHHhcccCCCCCCCcccccChhh
Q 038192 510 SKASAAQRAGRAGRTAP--GHCYRL---YSSAVFNNILPDFSCAEISKVPVDG 557 (764)
Q Consensus 510 Skasa~QR~GRAGR~~~--G~cyrL---ys~~~~~~~l~~~~~PEI~r~~L~~ 557 (764)
.--...|=.||.=|... |+++-| |....|...+++.-.|.+...+...
T Consensus 590 A~~~l~QavGRlIR~~~D~G~ivllD~R~~~~~y~~~l~~~l~~~~~~~~~~~ 642 (654)
T COG1199 590 AVIKLRQAVGRLIRSEDDRGVIVLLDKRYATKRYGKLLLDSLPPFPKSKDLNP 642 (654)
T ss_pred HHHHHHHhhccccccCCCceEEEEecccchhhhHHHHHHHhCCCCcccccchh
Confidence 33347788999988765 888744 3334455555555555555554443
No 264
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=85.47 E-value=0.74 Score=43.82 Aligned_cols=25 Identities=32% Similarity=0.497 Sum_probs=20.6
Q ss_pred eEEEEecCCCCccccHHHHHHHhcc
Q 038192 52 AVIICGETGCGKTTQVPQFLFEAGF 76 (764)
Q Consensus 52 vviI~GeTGSGKTTqvPq~Lle~~~ 76 (764)
+++|.|++||||||.+-+++.....
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~~ 25 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIAT 25 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHHh
Confidence 4789999999999998888776543
No 265
>PRK04328 hypothetical protein; Provisional
Probab=85.44 E-value=1.1 Score=47.11 Aligned_cols=27 Identities=30% Similarity=0.572 Sum_probs=24.4
Q ss_pred cCCeEEEEecCCCCccccHHHHHHHhc
Q 038192 49 DNSAVIICGETGCGKTTQVPQFLFEAG 75 (764)
Q Consensus 49 ~~~vviI~GeTGSGKTTqvPq~Lle~~ 75 (764)
.+.+++|.|++|||||+..-||+++..
T Consensus 22 ~gs~ili~G~pGsGKT~l~~~fl~~~~ 48 (249)
T PRK04328 22 ERNVVLLSGGPGTGKSIFSQQFLWNGL 48 (249)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 478999999999999999999999854
No 266
>TIGR03238 dnd_assoc_3 dnd system-associated protein 3. cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.
Probab=85.41 E-value=0.39 Score=54.74 Aligned_cols=22 Identities=27% Similarity=0.659 Sum_probs=19.7
Q ss_pred HHcCCeEEEEecCCCCccccHH
Q 038192 47 VNDNSAVIICGETGCGKTTQVP 68 (764)
Q Consensus 47 l~~~~vviI~GeTGSGKTTqvP 68 (764)
+..++++.|+|+.||||||.+-
T Consensus 29 i~~GEiv~L~G~SGsGKSTLLr 50 (504)
T TIGR03238 29 LPSSSLLFLCGSSGDGKSEILA 50 (504)
T ss_pred ecCCCEEEEECCCCCCHHHHHh
Confidence 4568999999999999999877
No 267
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=85.37 E-value=0.34 Score=48.03 Aligned_cols=19 Identities=37% Similarity=0.621 Sum_probs=16.1
Q ss_pred eEEEEecCCCCccccHHHH
Q 038192 52 AVIICGETGCGKTTQVPQF 70 (764)
Q Consensus 52 vviI~GeTGSGKTTqvPq~ 70 (764)
|++|.|.+||||||+--+.
T Consensus 1 ~i~i~G~pGsGKst~a~~l 19 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKI 19 (183)
T ss_pred CEEEECCCCCCHHHHHHHH
Confidence 5789999999999986653
No 268
>PRK05541 adenylylsulfate kinase; Provisional
Probab=85.37 E-value=0.24 Score=48.93 Aligned_cols=25 Identities=28% Similarity=0.369 Sum_probs=20.2
Q ss_pred HHHcCCeEEEEecCCCCccccHHHH
Q 038192 46 AVNDNSAVIICGETGCGKTTQVPQF 70 (764)
Q Consensus 46 ~l~~~~vviI~GeTGSGKTTqvPq~ 70 (764)
....+.+++++|..||||||+.-.+
T Consensus 3 ~~~~~~~I~i~G~~GsGKst~a~~l 27 (176)
T PRK05541 3 MKPNGYVIWITGLAGSGKTTIAKAL 27 (176)
T ss_pred CCCCCCEEEEEcCCCCCHHHHHHHH
Confidence 4456778999999999999987543
No 269
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=85.35 E-value=0.35 Score=49.31 Aligned_cols=20 Identities=35% Similarity=0.425 Sum_probs=16.7
Q ss_pred cCCeEEEEecCCCCccccHH
Q 038192 49 DNSAVIICGETGCGKTTQVP 68 (764)
Q Consensus 49 ~~~vviI~GeTGSGKTTqvP 68 (764)
.+.++.|+|++||||||..=
T Consensus 5 ~g~vi~I~G~sGsGKSTl~~ 24 (207)
T TIGR00235 5 KGIIIGIGGGSGSGKTTVAR 24 (207)
T ss_pred CeEEEEEECCCCCCHHHHHH
Confidence 35688899999999999763
No 270
>TIGR01074 rep ATP-dependent DNA helicase Rep. Designed to identify rep members of the uvrD/rep subfamily.
Probab=85.31 E-value=1.5 Score=52.94 Aligned_cols=67 Identities=22% Similarity=0.222 Sum_probs=43.5
Q ss_pred HHHHHHHHHcCCeEEEEecCCCCccccHHHHHHHhccCCCCCCCCCceEEEecccHHHHHHHHHHHHHHhCC
Q 038192 40 EQEIMEAVNDNSAVIICGETGCGKTTQVPQFLFEAGFGSNRCSSRSGRIGVTQPRRVAVLATAKRVAFELGL 111 (764)
Q Consensus 40 ~~~Il~~l~~~~vviI~GeTGSGKTTqvPq~Lle~~~~~~~~~~~~~~Ii~tQPRRiaAisvA~RVa~E~g~ 111 (764)
|.+++..- ...++|.|..||||||.+-.-+.......+ ..+.+|+|.-.+|-||..+-+|+...+|.
T Consensus 6 Q~~av~~~--~~~~~V~Ag~GSGKT~~L~~ri~~ll~~~~---~~p~~IL~vTFt~~Aa~em~~Rl~~~l~~ 72 (664)
T TIGR01074 6 QQEAVEYV--TGPCLVLAGAGSGKTRVITNKIAYLIQNCG---YKARNIAAVTFTNKAAREMKERVAKTLGK 72 (664)
T ss_pred HHHHHhCC--CCCEEEEecCCCCHHHHHHHHHHHHHHhcC---CCHHHeEEEeccHHHHHHHHHHHHHHhCc
Confidence 34444432 334778899999999887665443221100 01357888878888899999999887753
No 271
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=85.30 E-value=0.34 Score=50.56 Aligned_cols=23 Identities=26% Similarity=0.544 Sum_probs=19.5
Q ss_pred HHcCCeEEEEecCCCCccccHHH
Q 038192 47 VNDNSAVIICGETGCGKTTQVPQ 69 (764)
Q Consensus 47 l~~~~vviI~GeTGSGKTTqvPq 69 (764)
+..+..+.|.|+|||||||.+-.
T Consensus 27 i~~Ge~~~i~G~nGsGKSTL~~~ 49 (235)
T COG1122 27 IEKGERVLLIGPNGSGKSTLLKL 49 (235)
T ss_pred ECCCCEEEEECCCCCCHHHHHHH
Confidence 45678899999999999998754
No 272
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=85.28 E-value=12 Score=46.45 Aligned_cols=108 Identities=15% Similarity=0.137 Sum_probs=62.8
Q ss_pred hccCCCCceEEEEecCcccccCCCC--CeEEEEeCCcccceeeccC----------CCccccceeeccHH--hHHHhccc
Q 038192 455 FEDVKEGERLVVVSTNVAETSLTIP--GIKYVVDTGREKVKKYNSA----------NGIESYEIQWISKA--SAAQRAGR 520 (764)
Q Consensus 455 f~~~~~g~rKVIlsTNIAEtSITIp--dV~~VID~G~~K~~~yd~~----------~~~~~l~~~~iSka--sa~QR~GR 520 (764)
.+.|..+...|+++|+-.--||++| +...||=.+++-..-.||. .|-+.+...-.-+| ..+|=.||
T Consensus 687 ~~~F~~~~~~vLlG~~sFwEGVD~p~~~~~~viI~kLPF~~P~dP~~~a~~~~~~~~g~~~F~~~~lP~A~iklkQg~GR 766 (820)
T PRK07246 687 KKRFDRGEQQILLGLGSFWEGVDFVQADRMIEVITRLPFDNPEDPFVKKMNQYLLQEGKNPFYDYFLPMTILRLKQAIGR 766 (820)
T ss_pred HHHHHcCCCeEEEecchhhCCCCCCCCCeEEEEEecCCCCCCCCHHHHHHHHHHHHhCCCchhheeHHHHHHHHHHHhcc
Confidence 3444456678999999999999997 3555554566643322321 12233333333443 47888999
Q ss_pred cCCCCC--CEEE----EccCHHHhcccCCCCCCCc---ccccChhhHHHHHHH
Q 038192 521 AGRTAP--GHCY----RLYSSAVFNNILPDFSCAE---ISKVPVDGVVLLMKS 564 (764)
Q Consensus 521 AGR~~~--G~cy----rLys~~~~~~~l~~~~~PE---I~r~~L~~~~L~lk~ 564 (764)
.=|... |+.+ |+.++ .|-+.+. ...|+ +...++.++.-.++.
T Consensus 767 LIRs~~D~Gvv~ilD~R~~~k-~Yg~~~l-~sLP~~~~~~~~~~~~~~~~~~~ 817 (820)
T PRK07246 767 TMRREDQKSAVLILDRRILTK-SYGKQIL-ASLAEEFLISQQNFSDVLVEIDR 817 (820)
T ss_pred cccCCCCcEEEEEECCccccc-HHHHHHH-HhCCCCCccccCCHHHHHHHHHH
Confidence 999885 8876 44433 2322232 23343 556788887655543
No 273
>PHA02244 ATPase-like protein
Probab=85.17 E-value=0.64 Score=51.53 Aligned_cols=35 Identities=29% Similarity=0.353 Sum_probs=27.7
Q ss_pred hhHHHHHHHHHcCCeEEEEecCCCCccccHHHHHH
Q 038192 38 MMEQEIMEAVNDNSAVIICGETGCGKTTQVPQFLF 72 (764)
Q Consensus 38 ~~~~~Il~~l~~~~vviI~GeTGSGKTTqvPq~Ll 72 (764)
..+..+...+..+.-|++.|+||||||+.+=.+-.
T Consensus 107 ~~~~ri~r~l~~~~PVLL~GppGtGKTtLA~aLA~ 141 (383)
T PHA02244 107 YETADIAKIVNANIPVFLKGGAGSGKNHIAEQIAE 141 (383)
T ss_pred HHHHHHHHHHhcCCCEEEECCCCCCHHHHHHHHHH
Confidence 34557778888888899999999999987655443
No 274
>COG3973 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=85.16 E-value=2.1 Score=49.79 Aligned_cols=59 Identities=27% Similarity=0.394 Sum_probs=40.0
Q ss_pred cCCeEEEEecCCCCccccHHH---HHHHhccCCCCCCCCCceEEEecccHHHHHHHHHHHHHHhCCC
Q 038192 49 DNSAVIICGETGCGKTTQVPQ---FLFEAGFGSNRCSSRSGRIGVTQPRRVAVLATAKRVAFELGLH 112 (764)
Q Consensus 49 ~~~vviI~GeTGSGKTTqvPq---~Lle~~~~~~~~~~~~~~Ii~tQPRRiaAisvA~RVa~E~g~~ 112 (764)
.|.++||+|..||||||.--+ ||+-. +.... ....|+|.-|-|+-.--++. |--|+|+.
T Consensus 225 k~~ilVVQGaAGSGKTtiALHRvAyLlY~-~R~~l---~~k~vlvl~PN~vFleYis~-VLPeLGe~ 286 (747)
T COG3973 225 KNKILVVQGAAGSGKTTIALHRVAYLLYG-YRGPL---QAKPVLVLGPNRVFLEYISR-VLPELGEE 286 (747)
T ss_pred CCCeEEEecCCCCCchhHHHHHHHHHHhc-ccccc---ccCceEEEcCcHHHHHHHHH-hchhhccC
Confidence 367899999999999997444 44432 21111 11349999999997766544 77788763
No 275
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=84.76 E-value=1.4 Score=53.38 Aligned_cols=104 Identities=17% Similarity=0.195 Sum_probs=68.7
Q ss_pred hhcCCCchhhHHHHHHHHHcCCeEEEEecCCCCccccHHHHHHHhccCCCCCCCCCceEEEecccHHHHHHHHHHHHHHh
Q 038192 30 NRKDLPIVMMEQEIMEAVNDNSAVIICGETGCGKTTQVPQFLFEAGFGSNRCSSRSGRIGVTQPRRVAVLATAKRVAFEL 109 (764)
Q Consensus 30 ~R~~LPi~~~~~~Il~~l~~~~vviI~GeTGSGKTTqvPq~Lle~~~~~~~~~~~~~~Ii~tQPRRiaAisvA~RVa~E~ 109 (764)
.++.|-...+--+++-++.-++--|..=.||+|||.......+-.+... ..+.+.-|..++|..=|+....-+
T Consensus 73 ~~R~~g~~~~dvQlig~l~l~~G~iaEm~TGEGKTLvA~l~a~l~al~G-------~~v~vvT~neyLA~Rd~e~~~~~~ 145 (796)
T PRK12906 73 AKRVLGLRPFDVQIIGGIVLHEGNIAEMKTGEGKTLTATLPVYLNALTG-------KGVHVVTVNEYLSSRDATEMGELY 145 (796)
T ss_pred HHHHhCCCCchhHHHHHHHHhcCCcccccCCCCCcHHHHHHHHHHHHcC-------CCeEEEeccHHHHHhhHHHHHHHH
Confidence 3455666666667777765555557777899999976555444444432 256677899998888877665444
Q ss_pred CCCCCCEeeEEeccCcc----cCCCceEEEEchHHH
Q 038192 110 GLHLGKEVGFQVRHDKK----IGDSCSIKFMTDGIL 141 (764)
Q Consensus 110 g~~lG~~VGY~ir~e~~----~s~~t~I~f~T~GiL 141 (764)
+.+|-+||+-..-.+. .--.+.|+|+|+.=|
T Consensus 146 -~~LGl~vg~i~~~~~~~~r~~~y~~dI~Y~t~~e~ 180 (796)
T PRK12906 146 -RWLGLTVGLNLNSMSPDEKRAAYNCDITYSTNSEL 180 (796)
T ss_pred -HhcCCeEEEeCCCCCHHHHHHHhcCCCeecCCccc
Confidence 3578888876543221 113578999999644
No 276
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=84.73 E-value=0.44 Score=47.23 Aligned_cols=22 Identities=32% Similarity=0.545 Sum_probs=17.8
Q ss_pred CCeEEEEecCCCCccccHHHHH
Q 038192 50 NSAVIICGETGCGKTTQVPQFL 71 (764)
Q Consensus 50 ~~vviI~GeTGSGKTTqvPq~L 71 (764)
-.+++|.|+.||||||+.=...
T Consensus 3 ~~ii~i~G~~GsGKsTl~~~l~ 24 (188)
T TIGR01360 3 CKIIFIVGGPGSGKGTQCEKIV 24 (188)
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 3578999999999999875543
No 277
>PRK07667 uridine kinase; Provisional
Probab=84.70 E-value=0.65 Score=46.83 Aligned_cols=27 Identities=30% Similarity=0.351 Sum_probs=20.0
Q ss_pred HHHHHHHHcC----CeEEEEecCCCCccccH
Q 038192 41 QEIMEAVNDN----SAVIICGETGCGKTTQV 67 (764)
Q Consensus 41 ~~Il~~l~~~----~vviI~GeTGSGKTTqv 67 (764)
++|++++..+ -+|.|+|.+||||||..
T Consensus 4 ~~~~~~~~~~~~~~~iIgI~G~~gsGKStla 34 (193)
T PRK07667 4 NELINIMKKHKENRFILGIDGLSRSGKTTFV 34 (193)
T ss_pred HHHHHHHHhcCCCCEEEEEECCCCCCHHHHH
Confidence 4556666443 27789999999999975
No 278
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=84.38 E-value=1.5 Score=46.43 Aligned_cols=30 Identities=40% Similarity=0.583 Sum_probs=26.5
Q ss_pred HHcCCeEEEEecCCCCccccHHHHHHHhcc
Q 038192 47 VNDNSAVIICGETGCGKTTQVPQFLFEAGF 76 (764)
Q Consensus 47 l~~~~vviI~GeTGSGKTTqvPq~Lle~~~ 76 (764)
+..+.+++|+|++|||||+..-||+++..-
T Consensus 20 ~p~g~~~lI~G~pGsGKT~f~~qfl~~~~~ 49 (260)
T COG0467 20 LPRGSVVLITGPPGTGKTIFALQFLYEGAR 49 (260)
T ss_pred CcCCcEEEEEcCCCCcHHHHHHHHHHHHHh
Confidence 456899999999999999999999998654
No 279
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=84.24 E-value=0.42 Score=47.82 Aligned_cols=22 Identities=23% Similarity=0.450 Sum_probs=18.9
Q ss_pred HHcCCeEEEEecCCCCccccHH
Q 038192 47 VNDNSAVIICGETGCGKTTQVP 68 (764)
Q Consensus 47 l~~~~vviI~GeTGSGKTTqvP 68 (764)
+..+.++.|.|+.||||||.+=
T Consensus 15 i~~Ge~~~i~G~nGsGKSTLl~ 36 (190)
T TIGR01166 15 AERGEVLALLGANGAGKSTLLL 36 (190)
T ss_pred EcCCCEEEEECCCCCCHHHHHH
Confidence 4568899999999999999763
No 280
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=84.13 E-value=0.5 Score=47.25 Aligned_cols=21 Identities=19% Similarity=0.483 Sum_probs=17.6
Q ss_pred CCeEEEEecCCCCccccHHHH
Q 038192 50 NSAVIICGETGCGKTTQVPQF 70 (764)
Q Consensus 50 ~~vviI~GeTGSGKTTqvPq~ 70 (764)
+.+++|.|+.||||||.+-..
T Consensus 2 g~~i~l~G~sGsGKsTl~~~l 22 (186)
T PRK10078 2 GKLIWLMGPSGSGKDSLLAAL 22 (186)
T ss_pred CcEEEEECCCCCCHHHHHHHH
Confidence 467899999999999977554
No 281
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=84.08 E-value=2.3 Score=51.57 Aligned_cols=54 Identities=13% Similarity=0.209 Sum_probs=37.9
Q ss_pred HHHHHHHc-----CCeEEEEecCCCCcccc--HHHHHHHhccCCCCCCCCCceEEEecccHHHHHHHHH
Q 038192 42 EIMEAVND-----NSAVIICGETGCGKTTQ--VPQFLFEAGFGSNRCSSRSGRIGVTQPRRVAVLATAK 103 (764)
Q Consensus 42 ~Il~~l~~-----~~vviI~GeTGSGKTTq--vPq~Lle~~~~~~~~~~~~~~Ii~tQPRRiaAisvA~ 103 (764)
+|.+++.+ +.+++|.|+||+|||.. +|-.++-. ..+ .+++|+-.+..+=-|+..
T Consensus 36 ~V~~al~~~~~~~~~~lviEAgTGtGKTlaYLlPai~~A~--~~~------k~vVIST~T~~LQeQL~~ 96 (697)
T PRK11747 36 EVAKTLAGEYLKDGRILVIEAGTGVGKTLSYLLAGIPIAR--AEK------KKLVISTATVALQEQLVS 96 (697)
T ss_pred HHHHHHhcccccccceEEEECCCCcchhHHHHHHHHHHHH--HcC------CeEEEEcCCHHHHHHHHh
Confidence 46677776 47899999999999975 66544322 112 478899888777666643
No 282
>KOG0390 consensus DNA repair protein, SNF2 family [Replication, recombination and repair]
Probab=84.04 E-value=4 Score=49.37 Aligned_cols=88 Identities=18% Similarity=0.261 Sum_probs=66.5
Q ss_pred CeEEEecCCCCCHHHHHhhhccCC--CCc-eEEEEecCcccccCCCCCeEEEEeCCcccceeeccCCCccccceeeccHH
Q 038192 436 ALCVLPLYAMLPAAAQLRVFEDVK--EGE-RLVVVSTNVAETSLTIPGIKYVVDTGREKVKKYNSANGIESYEIQWISKA 512 (764)
Q Consensus 436 ~~~i~pLHs~l~~~eQ~~vf~~~~--~g~-rKVIlsTNIAEtSITIpdV~~VID~G~~K~~~yd~~~~~~~l~~~~iSka 512 (764)
++.++.|||+++..+|+++.+.|. .+. .-.++||-...-||.+=+-.-|| .||+.-+ |.---
T Consensus 619 g~~~~rLdG~~~~~qRq~~vd~FN~p~~~~~vfLlSsKAgg~GinLiGAsRli--------l~D~dWN-------Pa~d~ 683 (776)
T KOG0390|consen 619 GYEVLRLDGKTSIKQRQKLVDTFNDPESPSFVFLLSSKAGGEGLNLIGASRLI--------LFDPDWN-------PAVDQ 683 (776)
T ss_pred CceEEEEcCCCchHHHHHHHHhccCCCCCceEEEEecccccCceeecccceEE--------EeCCCCC-------chhHH
Confidence 678999999999999999877763 333 44457788888899988877777 4665544 22334
Q ss_pred hHHHhccccCCCCCCEEEEccCHHHh
Q 038192 513 SAAQRAGRAGRTAPGHCYRLYSSAVF 538 (764)
Q Consensus 513 sa~QR~GRAGR~~~G~cyrLys~~~~ 538 (764)
+|.=|+-|-|..+|=+.|||.+...-
T Consensus 684 QAmaR~~RdGQKk~v~iYrLlatGti 709 (776)
T KOG0390|consen 684 QAMARAWRDGQKKPVYIYRLLATGTI 709 (776)
T ss_pred HHHHHhccCCCcceEEEEEeecCCCc
Confidence 56668888888889999999998543
No 283
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=84.04 E-value=0.26 Score=52.21 Aligned_cols=34 Identities=21% Similarity=0.423 Sum_probs=28.0
Q ss_pred HHHHHHHcCCeEEEEecCCCCccccHHHHHHHhc
Q 038192 42 EIMEAVNDNSAVIICGETGCGKTTQVPQFLFEAG 75 (764)
Q Consensus 42 ~Il~~l~~~~vviI~GeTGSGKTTqvPq~Lle~~ 75 (764)
+++.-+..+.+++|.|+||+||||..-|+.....
T Consensus 22 ~~~gG~~~g~~~~i~g~~G~GKT~l~~~~~~~~~ 55 (271)
T cd01122 22 KLTKGLRKGELIILTAGTGVGKTTFLREYALDLI 55 (271)
T ss_pred eeeEEEcCCcEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 3445567789999999999999999999887654
No 284
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=84.02 E-value=1.2 Score=51.63 Aligned_cols=30 Identities=37% Similarity=0.464 Sum_probs=25.8
Q ss_pred HHcCCeEEEEecCCCCccccHHHHHHHhcc
Q 038192 47 VNDNSAVIICGETGCGKTTQVPQFLFEAGF 76 (764)
Q Consensus 47 l~~~~vviI~GeTGSGKTTqvPq~Lle~~~ 76 (764)
+-.+.+++|.|++|+||||...||+.+.+.
T Consensus 260 ~~~gs~~li~G~~G~GKt~l~~~f~~~~~~ 289 (484)
T TIGR02655 260 FFKDSIILATGATGTGKTLLVSKFLENACA 289 (484)
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 344689999999999999999999988653
No 285
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=83.73 E-value=0.45 Score=48.45 Aligned_cols=22 Identities=27% Similarity=0.566 Sum_probs=18.6
Q ss_pred HHcCCeEEEEecCCCCccccHH
Q 038192 47 VNDNSAVIICGETGCGKTTQVP 68 (764)
Q Consensus 47 l~~~~vviI~GeTGSGKTTqvP 68 (764)
+..++++.|.|+.||||||.+=
T Consensus 24 i~~G~~~~i~G~nGsGKSTLl~ 45 (214)
T cd03292 24 ISAGEFVFLVGPSGAGKSTLLK 45 (214)
T ss_pred EcCCCEEEEECCCCCCHHHHHH
Confidence 3568899999999999998654
No 286
>PRK14530 adenylate kinase; Provisional
Probab=83.70 E-value=0.51 Score=48.38 Aligned_cols=21 Identities=29% Similarity=0.596 Sum_probs=17.1
Q ss_pred CCeEEEEecCCCCccccHHHH
Q 038192 50 NSAVIICGETGCGKTTQVPQF 70 (764)
Q Consensus 50 ~~vviI~GeTGSGKTTqvPq~ 70 (764)
+..++|.|.+||||||+.-..
T Consensus 3 ~~~I~i~G~pGsGKsT~~~~L 23 (215)
T PRK14530 3 QPRILLLGAPGAGKGTQSSNL 23 (215)
T ss_pred CCEEEEECCCCCCHHHHHHHH
Confidence 345888999999999987654
No 287
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=83.69 E-value=0.46 Score=48.70 Aligned_cols=22 Identities=27% Similarity=0.312 Sum_probs=19.2
Q ss_pred HHcCCeEEEEecCCCCccccHH
Q 038192 47 VNDNSAVIICGETGCGKTTQVP 68 (764)
Q Consensus 47 l~~~~vviI~GeTGSGKTTqvP 68 (764)
+..++++.|.|+.||||||.+=
T Consensus 10 i~~Ge~~~l~G~NGsGKSTLlk 31 (213)
T PRK15177 10 MGYHEHIGILAAPGSGKTTLTR 31 (213)
T ss_pred EcCCCEEEEECCCCCCHHHHHH
Confidence 4568999999999999999874
No 288
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=83.69 E-value=0.46 Score=50.10 Aligned_cols=23 Identities=26% Similarity=0.361 Sum_probs=19.4
Q ss_pred HHcCCeEEEEecCCCCccccHHH
Q 038192 47 VNDNSAVIICGETGCGKTTQVPQ 69 (764)
Q Consensus 47 l~~~~vviI~GeTGSGKTTqvPq 69 (764)
+..+.++.|.|+.||||||.+=-
T Consensus 25 i~~G~i~~iiGpNG~GKSTLLk~ 47 (258)
T COG1120 25 IPKGEITGILGPNGSGKSTLLKC 47 (258)
T ss_pred ecCCcEEEEECCCCCCHHHHHHH
Confidence 45689999999999999997643
No 289
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=83.66 E-value=0.59 Score=44.48 Aligned_cols=18 Identities=28% Similarity=0.744 Sum_probs=14.5
Q ss_pred EEEEecCCCCccccHHHH
Q 038192 53 VIICGETGCGKTTQVPQF 70 (764)
Q Consensus 53 viI~GeTGSGKTTqvPq~ 70 (764)
++|.|+|||||||..=+.
T Consensus 2 i~i~GpsGsGKstl~~~L 19 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRL 19 (137)
T ss_pred EEEECCCCCCHHHHHHHH
Confidence 688999999999855443
No 290
>COG0802 Predicted ATPase or kinase [General function prediction only]
Probab=83.63 E-value=0.78 Score=44.18 Aligned_cols=34 Identities=29% Similarity=0.500 Sum_probs=27.2
Q ss_pred hHHHHHHHHHcCCeEEEEecCCCCccccHHHHHH
Q 038192 39 MEQEIMEAVNDNSAVIICGETGCGKTTQVPQFLF 72 (764)
Q Consensus 39 ~~~~Il~~l~~~~vviI~GeTGSGKTTqvPq~Ll 72 (764)
.-+.+-+++..++||+++|+=|+||||.+=-++.
T Consensus 14 lg~~l~~~l~~g~Vv~L~GdLGAGKTtf~rgi~~ 47 (149)
T COG0802 14 LGERLAEALKAGDVVLLSGDLGAGKTTLVRGIAK 47 (149)
T ss_pred HHHHHHhhCCCCCEEEEEcCCcCChHHHHHHHHH
Confidence 3456777888999999999999999987654443
No 291
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=83.62 E-value=0.46 Score=47.81 Aligned_cols=22 Identities=27% Similarity=0.537 Sum_probs=18.7
Q ss_pred HHcCCeEEEEecCCCCccccHH
Q 038192 47 VNDNSAVIICGETGCGKTTQVP 68 (764)
Q Consensus 47 l~~~~vviI~GeTGSGKTTqvP 68 (764)
+..++++.|.|++||||||.+=
T Consensus 23 i~~Ge~~~l~G~nGsGKSTLl~ 44 (195)
T PRK13541 23 FLPSAITYIKGANGCGKSSLLR 44 (195)
T ss_pred EcCCcEEEEECCCCCCHHHHHH
Confidence 4578899999999999999653
No 292
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=83.61 E-value=0.46 Score=48.16 Aligned_cols=23 Identities=26% Similarity=0.446 Sum_probs=19.6
Q ss_pred HHcCCeEEEEecCCCCccccHHH
Q 038192 47 VNDNSAVIICGETGCGKTTQVPQ 69 (764)
Q Consensus 47 l~~~~vviI~GeTGSGKTTqvPq 69 (764)
+..++++.|.|+.||||||.+=.
T Consensus 23 i~~Ge~~~i~G~nGsGKSTLl~~ 45 (205)
T cd03226 23 LYAGEIIALTGKNGAGKTTLAKI 45 (205)
T ss_pred EcCCCEEEEECCCCCCHHHHHHH
Confidence 46789999999999999987653
No 293
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=83.58 E-value=1 Score=45.78 Aligned_cols=27 Identities=26% Similarity=0.330 Sum_probs=23.3
Q ss_pred cCCeEEEEecCCCCccccHHHHHHHhc
Q 038192 49 DNSAVIICGETGCGKTTQVPQFLFEAG 75 (764)
Q Consensus 49 ~~~vviI~GeTGSGKTTqvPq~Lle~~ 75 (764)
.++++.|.|++|||||+..-|++.+..
T Consensus 11 ~g~i~~i~G~~GsGKT~l~~~~~~~~~ 37 (209)
T TIGR02237 11 RGTITQIYGPPGSGKTNICMILAVNAA 37 (209)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 468999999999999999888887654
No 294
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=83.56 E-value=0.45 Score=48.16 Aligned_cols=22 Identities=32% Similarity=0.558 Sum_probs=18.7
Q ss_pred HHcCCeEEEEecCCCCccccHH
Q 038192 47 VNDNSAVIICGETGCGKTTQVP 68 (764)
Q Consensus 47 l~~~~vviI~GeTGSGKTTqvP 68 (764)
+..++++.|.|++||||||.+=
T Consensus 21 i~~Ge~~~i~G~nGsGKSTLl~ 42 (206)
T TIGR03608 21 IEKGKMYAIIGESGSGKSTLLN 42 (206)
T ss_pred EeCCcEEEEECCCCCCHHHHHH
Confidence 4568899999999999999654
No 295
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=83.54 E-value=0.54 Score=46.50 Aligned_cols=20 Identities=25% Similarity=0.444 Sum_probs=16.8
Q ss_pred CeEEEEecCCCCccccHHHH
Q 038192 51 SAVIICGETGCGKTTQVPQF 70 (764)
Q Consensus 51 ~vviI~GeTGSGKTTqvPq~ 70 (764)
.+++|.|++||||||..-+.
T Consensus 2 ~~~~i~G~sGsGKttl~~~l 21 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYA 21 (179)
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 57899999999999977643
No 296
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=83.53 E-value=0.46 Score=48.59 Aligned_cols=23 Identities=30% Similarity=0.507 Sum_probs=19.2
Q ss_pred HHcCCeEEEEecCCCCccccHHH
Q 038192 47 VNDNSAVIICGETGCGKTTQVPQ 69 (764)
Q Consensus 47 l~~~~vviI~GeTGSGKTTqvPq 69 (764)
+..++++.|.|+.||||||.+=.
T Consensus 27 i~~G~~~~l~G~nGsGKSTLl~~ 49 (218)
T cd03255 27 IEKGEFVAIVGPSGSGKSTLLNI 49 (218)
T ss_pred EcCCCEEEEEcCCCCCHHHHHHH
Confidence 45689999999999999986643
No 297
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=83.50 E-value=0.64 Score=47.56 Aligned_cols=29 Identities=28% Similarity=0.412 Sum_probs=24.6
Q ss_pred HHcCCeEEEEecCCCCccccHHHHHHHhc
Q 038192 47 VNDNSAVIICGETGCGKTTQVPQFLFEAG 75 (764)
Q Consensus 47 l~~~~vviI~GeTGSGKTTqvPq~Lle~~ 75 (764)
+..+.+++|.|++||||||..-|++.+..
T Consensus 16 i~~g~i~~i~G~~GsGKT~l~~~~a~~~~ 44 (218)
T cd01394 16 VERGTVTQVYGPPGTGKTNIAIQLAVETA 44 (218)
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 34478999999999999999999987754
No 298
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=83.49 E-value=0.47 Score=48.24 Aligned_cols=23 Identities=30% Similarity=0.453 Sum_probs=19.5
Q ss_pred HHcCCeEEEEecCCCCccccHHH
Q 038192 47 VNDNSAVIICGETGCGKTTQVPQ 69 (764)
Q Consensus 47 l~~~~vviI~GeTGSGKTTqvPq 69 (764)
+..++++.|.|+.||||||.+=.
T Consensus 23 i~~G~~~~i~G~nGsGKSTLl~~ 45 (210)
T cd03269 23 VEKGEIFGLLGPNGAGKTTTIRM 45 (210)
T ss_pred EcCCcEEEEECCCCCCHHHHHHH
Confidence 45788999999999999997644
No 299
>PRK14729 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Provisional
Probab=83.42 E-value=0.48 Score=51.25 Aligned_cols=17 Identities=41% Similarity=0.673 Sum_probs=14.9
Q ss_pred cCCeEEEEecCCCCccc
Q 038192 49 DNSAVIICGETGCGKTT 65 (764)
Q Consensus 49 ~~~vviI~GeTGSGKTT 65 (764)
.+.+++|.|+||||||.
T Consensus 3 ~~~ii~I~GpTasGKS~ 19 (300)
T PRK14729 3 ENKIVFIFGPTAVGKSN 19 (300)
T ss_pred CCcEEEEECCCccCHHH
Confidence 46789999999999993
No 300
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=83.27 E-value=0.5 Score=44.68 Aligned_cols=18 Identities=33% Similarity=0.481 Sum_probs=14.9
Q ss_pred eEEEEecCCCCccccHHH
Q 038192 52 AVIICGETGCGKTTQVPQ 69 (764)
Q Consensus 52 vviI~GeTGSGKTTqvPq 69 (764)
+++|+|++||||||.--.
T Consensus 1 ~I~i~G~~GsGKst~a~~ 18 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKL 18 (147)
T ss_pred CEEEECCCCCCHHHHHHH
Confidence 578999999999986543
No 301
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=83.18 E-value=1.4 Score=45.45 Aligned_cols=28 Identities=32% Similarity=0.408 Sum_probs=24.1
Q ss_pred HHcCCeEEEEecCCCCccccHHHHHHHh
Q 038192 47 VNDNSAVIICGETGCGKTTQVPQFLFEA 74 (764)
Q Consensus 47 l~~~~vviI~GeTGSGKTTqvPq~Lle~ 74 (764)
+..+.++.|.|++|||||+..-|+++..
T Consensus 16 i~~g~i~~i~G~~GsGKT~l~~~l~~~~ 43 (235)
T cd01123 16 IETGSITEIFGEFGSGKTQLCHQLAVTV 43 (235)
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHe
Confidence 4457899999999999999999988763
No 302
>PF13476 AAA_23: AAA domain; PDB: 3AV0_B 3AUY_B 3AUX_A 2O5V_A 3QG5_B 3QF7_A 3THO_A.
Probab=83.17 E-value=0.52 Score=46.87 Aligned_cols=19 Identities=32% Similarity=0.531 Sum_probs=16.2
Q ss_pred cCCeEEEEecCCCCccccH
Q 038192 49 DNSAVIICGETGCGKTTQV 67 (764)
Q Consensus 49 ~~~vviI~GeTGSGKTTqv 67 (764)
...+.+|.|++|+||||.+
T Consensus 18 ~~g~~vi~G~Ng~GKStil 36 (202)
T PF13476_consen 18 SPGLNVIYGPNGSGKSTIL 36 (202)
T ss_dssp -SEEEEEEESTTSSHHHHH
T ss_pred CCCcEEEECCCCCCHHHHH
Confidence 3568999999999999976
No 303
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=83.15 E-value=0.5 Score=48.22 Aligned_cols=23 Identities=30% Similarity=0.489 Sum_probs=19.6
Q ss_pred HHcCCeEEEEecCCCCccccHHH
Q 038192 47 VNDNSAVIICGETGCGKTTQVPQ 69 (764)
Q Consensus 47 l~~~~vviI~GeTGSGKTTqvPq 69 (764)
+..++++.|.|+.||||||.+=.
T Consensus 22 i~~Ge~~~l~G~nGsGKSTLl~~ 44 (213)
T cd03235 22 VKPGEFLAIVGPNGAGKSTLLKA 44 (213)
T ss_pred EcCCCEEEEECCCCCCHHHHHHH
Confidence 46789999999999999997643
No 304
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=83.14 E-value=0.51 Score=47.13 Aligned_cols=17 Identities=35% Similarity=0.684 Sum_probs=14.5
Q ss_pred EEEEecCCCCccccHHH
Q 038192 53 VIICGETGCGKTTQVPQ 69 (764)
Q Consensus 53 viI~GeTGSGKTTqvPq 69 (764)
++|.|++|||||||--+
T Consensus 3 iiilG~pGaGK~T~A~~ 19 (178)
T COG0563 3 ILILGPPGAGKSTLAKK 19 (178)
T ss_pred EEEECCCCCCHHHHHHH
Confidence 68889999999998544
No 305
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=83.08 E-value=0.48 Score=48.59 Aligned_cols=22 Identities=36% Similarity=0.575 Sum_probs=19.1
Q ss_pred HHcCCeEEEEecCCCCccccHH
Q 038192 47 VNDNSAVIICGETGCGKTTQVP 68 (764)
Q Consensus 47 l~~~~vviI~GeTGSGKTTqvP 68 (764)
+..++++.|.|+.||||||.+=
T Consensus 23 i~~Ge~~~i~G~nGsGKSTLl~ 44 (222)
T cd03224 23 VPEGEIVALLGRNGAGKTTLLK 44 (222)
T ss_pred EcCCeEEEEECCCCCCHHHHHH
Confidence 4578999999999999999763
No 306
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=83.07 E-value=0.5 Score=48.90 Aligned_cols=22 Identities=32% Similarity=0.475 Sum_probs=19.0
Q ss_pred HHcCCeEEEEecCCCCccccHH
Q 038192 47 VNDNSAVIICGETGCGKTTQVP 68 (764)
Q Consensus 47 l~~~~vviI~GeTGSGKTTqvP 68 (764)
+..++++.|.|++||||||.+=
T Consensus 28 i~~Ge~~~l~G~nGsGKSTLl~ 49 (233)
T cd03258 28 VPKGEIFGIIGRSGAGKSTLIR 49 (233)
T ss_pred EcCCCEEEEECCCCCCHHHHHH
Confidence 4678999999999999999654
No 307
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=83.06 E-value=0.5 Score=49.19 Aligned_cols=22 Identities=36% Similarity=0.573 Sum_probs=19.0
Q ss_pred HHcCCeEEEEecCCCCccccHH
Q 038192 47 VNDNSAVIICGETGCGKTTQVP 68 (764)
Q Consensus 47 l~~~~vviI~GeTGSGKTTqvP 68 (764)
+..++++.|.|+.||||||.+=
T Consensus 25 i~~Ge~~~l~G~nGsGKSTLl~ 46 (243)
T TIGR02315 25 INPGEFVAIIGPSGAGKSTLLR 46 (243)
T ss_pred EcCCCEEEEECCCCCCHHHHHH
Confidence 4678999999999999999763
No 308
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=83.03 E-value=0.85 Score=43.22 Aligned_cols=38 Identities=24% Similarity=0.417 Sum_probs=27.7
Q ss_pred hhhHHHHHHHHHcCCeEEEEecCCCCccccHHHHHHHhc
Q 038192 37 VMMEQEIMEAVNDNSAVIICGETGCGKTTQVPQFLFEAG 75 (764)
Q Consensus 37 ~~~~~~Il~~l~~~~vviI~GeTGSGKTTqvPq~Lle~~ 75 (764)
-..++++-.+-..+..|+|+||+||||++ +-.+|....
T Consensus 8 ~~l~~~l~~~a~~~~pvli~GE~GtGK~~-~A~~lh~~~ 45 (138)
T PF14532_consen 8 RRLRRQLERLAKSSSPVLITGEPGTGKSL-LARALHRYS 45 (138)
T ss_dssp HHHHHHHHHHHCSSS-EEEECCTTSSHHH-HHHCCHHTT
T ss_pred HHHHHHHHHHhCCCCcEEEEcCCCCCHHH-HHHHHHhhc
Confidence 34566677777778889999999999996 556666543
No 309
>PRK14527 adenylate kinase; Provisional
Probab=82.98 E-value=0.58 Score=46.96 Aligned_cols=23 Identities=39% Similarity=0.588 Sum_probs=18.9
Q ss_pred cCCeEEEEecCCCCccccHHHHH
Q 038192 49 DNSAVIICGETGCGKTTQVPQFL 71 (764)
Q Consensus 49 ~~~vviI~GeTGSGKTTqvPq~L 71 (764)
...+++|.|++||||||+.-+..
T Consensus 5 ~~~~i~i~G~pGsGKsT~a~~La 27 (191)
T PRK14527 5 KNKVVIFLGPPGAGKGTQAERLA 27 (191)
T ss_pred CCcEEEEECCCCCCHHHHHHHHH
Confidence 45789999999999999876543
No 310
>PRK07261 topology modulation protein; Provisional
Probab=82.88 E-value=0.54 Score=46.52 Aligned_cols=17 Identities=35% Similarity=0.593 Sum_probs=14.6
Q ss_pred EEEEecCCCCccccHHH
Q 038192 53 VIICGETGCGKTTQVPQ 69 (764)
Q Consensus 53 viI~GeTGSGKTTqvPq 69 (764)
++|.|.+||||||..=+
T Consensus 3 i~i~G~~GsGKSTla~~ 19 (171)
T PRK07261 3 IAIIGYSGSGKSTLARK 19 (171)
T ss_pred EEEEcCCCCCHHHHHHH
Confidence 68899999999987654
No 311
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=82.77 E-value=0.53 Score=47.98 Aligned_cols=22 Identities=27% Similarity=0.552 Sum_probs=19.2
Q ss_pred HHcCCeEEEEecCCCCccccHH
Q 038192 47 VNDNSAVIICGETGCGKTTQVP 68 (764)
Q Consensus 47 l~~~~vviI~GeTGSGKTTqvP 68 (764)
+..++++.|.|+.||||||.+=
T Consensus 25 i~~G~~~~l~G~nGsGKSTLl~ 46 (214)
T TIGR02673 25 IRKGEFLFLTGPSGAGKTTLLK 46 (214)
T ss_pred EcCCCEEEEECCCCCCHHHHHH
Confidence 4678999999999999999763
No 312
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=82.77 E-value=1.2 Score=48.67 Aligned_cols=35 Identities=23% Similarity=0.356 Sum_probs=28.1
Q ss_pred HHHHHHHHcCCeEEEEecCCCCccccHHHHHHHhc
Q 038192 41 QEIMEAVNDNSAVIICGETGCGKTTQVPQFLFEAG 75 (764)
Q Consensus 41 ~~Il~~l~~~~vviI~GeTGSGKTTqvPq~Lle~~ 75 (764)
..|+..+..++.+++.|++||||||.+-++--..+
T Consensus 55 ~~vl~~l~~~~~ilL~G~pGtGKTtla~~lA~~l~ 89 (327)
T TIGR01650 55 KAICAGFAYDRRVMVQGYHGTGKSTHIEQIAARLN 89 (327)
T ss_pred HHHHHHHhcCCcEEEEeCCCChHHHHHHHHHHHHC
Confidence 34777788788899999999999998877655544
No 313
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=82.75 E-value=0.5 Score=48.04 Aligned_cols=22 Identities=32% Similarity=0.596 Sum_probs=18.8
Q ss_pred HHcCCeEEEEecCCCCccccHH
Q 038192 47 VNDNSAVIICGETGCGKTTQVP 68 (764)
Q Consensus 47 l~~~~vviI~GeTGSGKTTqvP 68 (764)
+..++++.|.|+.||||||.+=
T Consensus 24 i~~G~~~~l~G~nGsGKSTLl~ 45 (211)
T cd03225 24 IKKGEFVLIVGPNGSGKSTLLR 45 (211)
T ss_pred EcCCcEEEEECCCCCCHHHHHH
Confidence 4568899999999999999654
No 314
>PRK14531 adenylate kinase; Provisional
Probab=82.67 E-value=0.58 Score=46.72 Aligned_cols=19 Identities=32% Similarity=0.607 Sum_probs=15.7
Q ss_pred eEEEEecCCCCccccHHHH
Q 038192 52 AVIICGETGCGKTTQVPQF 70 (764)
Q Consensus 52 vviI~GeTGSGKTTqvPq~ 70 (764)
.+++.|++|||||||--..
T Consensus 4 ~i~i~G~pGsGKsT~~~~l 22 (183)
T PRK14531 4 RLLFLGPPGAGKGTQAARL 22 (183)
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 4788999999999985543
No 315
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=82.64 E-value=0.52 Score=47.87 Aligned_cols=23 Identities=30% Similarity=0.378 Sum_probs=19.3
Q ss_pred HHcCCeEEEEecCCCCccccHHH
Q 038192 47 VNDNSAVIICGETGCGKTTQVPQ 69 (764)
Q Consensus 47 l~~~~vviI~GeTGSGKTTqvPq 69 (764)
+..++++.|.|+.||||||.+=-
T Consensus 23 i~~G~~~~i~G~nGsGKSTLl~~ 45 (208)
T cd03268 23 VKKGEIYGFLGPNGAGKTTTMKI 45 (208)
T ss_pred EcCCcEEEEECCCCCCHHHHHHH
Confidence 35688999999999999987644
No 316
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=82.63 E-value=1.2 Score=52.02 Aligned_cols=21 Identities=38% Similarity=0.801 Sum_probs=17.5
Q ss_pred CCeEEEEecCCCCccccHHHH
Q 038192 50 NSAVIICGETGCGKTTQVPQF 70 (764)
Q Consensus 50 ~~vviI~GeTGSGKTTqvPq~ 70 (764)
.++++++|++||||||.|=..
T Consensus 45 ~~iLlLtGP~G~GKtttv~~L 65 (519)
T PF03215_consen 45 KRILLLTGPSGCGKTTTVKVL 65 (519)
T ss_pred cceEEEECCCCCCHHHHHHHH
Confidence 368999999999999988443
No 317
>PRK11773 uvrD DNA-dependent helicase II; Provisional
Probab=82.62 E-value=3 Score=50.95 Aligned_cols=63 Identities=19% Similarity=0.228 Sum_probs=43.6
Q ss_pred hHHHHHHHHHcCCeEEEEecCCCCccccHHH---HHHHh-ccCCCCCCCCCceEEEecccHHHHHHHHHHHHHHhC
Q 038192 39 MEQEIMEAVNDNSAVIICGETGCGKTTQVPQ---FLFEA-GFGSNRCSSRSGRIGVTQPRRVAVLATAKRVAFELG 110 (764)
Q Consensus 39 ~~~~Il~~l~~~~vviI~GeTGSGKTTqvPq---~Lle~-~~~~~~~~~~~~~Ii~tQPRRiaAisvA~RVa~E~g 110 (764)
.|.+++... ...++|.|..|||||+.+-. +|++. +. .+.+|++.--+|-||-.+-+|+....|
T Consensus 13 ~Q~~av~~~--~g~~lV~AgaGSGKT~vl~~Ria~Li~~~~v-------~p~~IL~lTFT~kAA~Em~~Rl~~~~~ 79 (721)
T PRK11773 13 KQREAVAAP--LGNMLVLAGAGSGKTRVLVHRIAWLMQVENA-------SPYSIMAVTFTNKAAAEMRHRIEQLLG 79 (721)
T ss_pred HHHHHHhCC--CCCEEEEecCCCCHHHHHHHHHHHHHHcCCC-------ChhHeEeeeccHHHHHHHHHHHHHHhc
Confidence 344444433 23467778899999987654 34432 22 235899999999999999999988765
No 318
>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1) [, ]. SNF2 functions as the ATPase component of the SNF2/SWI multisubunit complex, which utilises energy derived from ATP hydrolysis to disrupt histone-DNA interactions, resulting in the increased accessibility of DNA to transcription factors. Proteins that contain this domain appear to be distantly related to the DEAX box helicases IPR001410 from INTERPRO, however no helicase activity has ever been demonstrated for these proteins. ; GO: 0003677 DNA binding, 0005524 ATP binding; PDB: 1Z63_B 1Z3I_X 3DMQ_A 3MWY_W.
Probab=82.53 E-value=3.4 Score=43.84 Aligned_cols=126 Identities=13% Similarity=0.087 Sum_probs=55.9
Q ss_pred cCCeEEEEecCCCCccccHHHHHHHhccCCCCCCCCCceEEEecccHHHHHHHHHHHHHHhCC-CCCCEeeEEeccC---
Q 038192 49 DNSAVIICGETGCGKTTQVPQFLFEAGFGSNRCSSRSGRIGVTQPRRVAVLATAKRVAFELGL-HLGKEVGFQVRHD--- 124 (764)
Q Consensus 49 ~~~vviI~GeTGSGKTTqvPq~Lle~~~~~~~~~~~~~~Ii~tQPRRiaAisvA~RVa~E~g~-~lG~~VGY~ir~e--- 124 (764)
...-.++.-++|+|||.+.--++..-...... .....++|..|..+...- ...+..-... .+ ..+-| ...+
T Consensus 24 ~~~g~lL~de~GlGKT~~~i~~~~~l~~~~~~--~~~~~~LIv~P~~l~~~W-~~E~~~~~~~~~~-~v~~~-~~~~~~~ 98 (299)
T PF00176_consen 24 PPRGGLLADEMGLGKTITAIALISYLKNEFPQ--RGEKKTLIVVPSSLLSQW-KEEIEKWFDPDSL-RVIIY-DGDSERR 98 (299)
T ss_dssp TT-EEEE---TTSSHHHHHHHHHHHHHHCCTT--SS-S-EEEEE-TTTHHHH-HHHHHHHSGT-TS--EEEE-SSSCHHH
T ss_pred CCCCEEEEECCCCCchhhhhhhhhhhhhcccc--ccccceeEeeccchhhhh-hhhhccccccccc-ccccc-ccccccc
Confidence 44568899999999998877666521111110 001246666676544322 2223322211 11 11111 1111
Q ss_pred ---cccCCCceEEEEchHHHH-----H---HHHH------HHHHHHHHHhhc--cccCCccCCCCceEEEeeccc
Q 038192 125 ---KKIGDSCSIKFMTDGILL-----R---ELKA------LYEKQQQLLRSG--QCIEPKDRVFPLKLILMSATL 180 (764)
Q Consensus 125 ---~~~s~~t~I~f~T~GiLL-----r---~l~~------i~de~~~~l~~~--~~~~~~~~~~~lKlILMSATl 180 (764)
...-....++++|...+. . .+.. |+||+|..=... ....+.. ...-+.++||||.
T Consensus 99 ~~~~~~~~~~~vvi~ty~~~~~~~~~~~~~~l~~~~~~~vIvDEaH~~k~~~s~~~~~l~~-l~~~~~~lLSgTP 172 (299)
T PF00176_consen 99 RLSKNQLPKYDVVITTYETLRKARKKKDKEDLKQIKWDRVIVDEAHRLKNKDSKRYKALRK-LRARYRWLLSGTP 172 (299)
T ss_dssp HTTSSSCCCSSEEEEEHHHHH--TSTHTTHHHHTSEEEEEEETTGGGGTTTTSHHHHHHHC-CCECEEEEE-SS-
T ss_pred cccccccccceeeeccccccccccccccccccccccceeEEEecccccccccccccccccc-cccceEEeecccc
Confidence 122345679999999998 2 2221 558877641000 0000001 1245678899997
No 319
>PRK08356 hypothetical protein; Provisional
Probab=82.53 E-value=0.57 Score=47.28 Aligned_cols=20 Identities=35% Similarity=0.421 Sum_probs=16.8
Q ss_pred CeEEEEecCCCCccccHHHH
Q 038192 51 SAVIICGETGCGKTTQVPQF 70 (764)
Q Consensus 51 ~vviI~GeTGSGKTTqvPq~ 70 (764)
.+++|+|++||||||+.-..
T Consensus 6 ~~i~~~G~~gsGK~t~a~~l 25 (195)
T PRK08356 6 MIVGVVGKIAAGKTTVAKFF 25 (195)
T ss_pred EEEEEECCCCCCHHHHHHHH
Confidence 36789999999999998554
No 320
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=82.51 E-value=0.54 Score=46.65 Aligned_cols=23 Identities=26% Similarity=0.471 Sum_probs=19.2
Q ss_pred HHcCCeEEEEecCCCCccccHHH
Q 038192 47 VNDNSAVIICGETGCGKTTQVPQ 69 (764)
Q Consensus 47 l~~~~vviI~GeTGSGKTTqvPq 69 (764)
+..++++.|.|+.||||||.+=.
T Consensus 23 i~~G~~~~i~G~nGsGKSTLl~~ 45 (178)
T cd03229 23 IEAGEIVALLGPSGSGKSTLLRC 45 (178)
T ss_pred EcCCCEEEEECCCCCCHHHHHHH
Confidence 45688999999999999996543
No 321
>PRK06762 hypothetical protein; Provisional
Probab=82.42 E-value=0.58 Score=45.62 Aligned_cols=20 Identities=45% Similarity=0.700 Sum_probs=16.5
Q ss_pred CeEEEEecCCCCccccHHHH
Q 038192 51 SAVIICGETGCGKTTQVPQF 70 (764)
Q Consensus 51 ~vviI~GeTGSGKTTqvPq~ 70 (764)
.+++|+|..||||||..-.+
T Consensus 3 ~li~i~G~~GsGKST~A~~L 22 (166)
T PRK06762 3 TLIIIRGNSGSGKTTIAKQL 22 (166)
T ss_pred eEEEEECCCCCCHHHHHHHH
Confidence 46899999999999977543
No 322
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=82.41 E-value=0.55 Score=45.00 Aligned_cols=22 Identities=27% Similarity=0.545 Sum_probs=18.5
Q ss_pred HHcCCeEEEEecCCCCccccHH
Q 038192 47 VNDNSAVIICGETGCGKTTQVP 68 (764)
Q Consensus 47 l~~~~vviI~GeTGSGKTTqvP 68 (764)
+..++++.|.|+.||||||.+=
T Consensus 23 ~~~Ge~~~i~G~nGsGKStLl~ 44 (144)
T cd03221 23 INPGDRIGLVGRNGAGKSTLLK 44 (144)
T ss_pred ECCCCEEEEECCCCCCHHHHHH
Confidence 3567899999999999998653
No 323
>TIGR03819 heli_sec_ATPase helicase/secretion neighborhood ATPase. Members of this protein family comprise a distinct clade of putative ATPase associated with an integral membrane complex likely to act in pilus formation, secretion, or conjugal transfer. The association of most members with a nearby gene for a DEAH-box helicase suggests a role in conjugal transfer.
Probab=82.41 E-value=1.3 Score=49.01 Aligned_cols=28 Identities=36% Similarity=0.512 Sum_probs=21.8
Q ss_pred HHHHHHcCCeEEEEecCCCCccccHHHH
Q 038192 43 IMEAVNDNSAVIICGETGCGKTTQVPQF 70 (764)
Q Consensus 43 Il~~l~~~~vviI~GeTGSGKTTqvPq~ 70 (764)
+-.+++.+..++|+|+|||||||.+--.
T Consensus 171 L~~~v~~~~~ili~G~tGsGKTTll~al 198 (340)
T TIGR03819 171 LRAIVAARLAFLISGGTGSGKTTLLSAL 198 (340)
T ss_pred HHHHHhCCCeEEEECCCCCCHHHHHHHH
Confidence 3344666778999999999999988543
No 324
>PRK00698 tmk thymidylate kinase; Validated
Probab=82.38 E-value=0.62 Score=46.91 Aligned_cols=20 Identities=35% Similarity=0.479 Sum_probs=17.3
Q ss_pred CCeEEEEecCCCCccccHHH
Q 038192 50 NSAVIICGETGCGKTTQVPQ 69 (764)
Q Consensus 50 ~~vviI~GeTGSGKTTqvPq 69 (764)
+.+++|.|..|||||||.=.
T Consensus 3 ~~~I~ieG~~gsGKsT~~~~ 22 (205)
T PRK00698 3 GMFITIEGIDGAGKSTQIEL 22 (205)
T ss_pred ceEEEEECCCCCCHHHHHHH
Confidence 56899999999999999753
No 325
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=82.33 E-value=0.56 Score=47.85 Aligned_cols=22 Identities=36% Similarity=0.667 Sum_probs=19.0
Q ss_pred HHcCCeEEEEecCCCCccccHH
Q 038192 47 VNDNSAVIICGETGCGKTTQVP 68 (764)
Q Consensus 47 l~~~~vviI~GeTGSGKTTqvP 68 (764)
+..++++.|.|+.||||||.+=
T Consensus 23 i~~Ge~~~i~G~nGsGKSTLl~ 44 (213)
T cd03259 23 VEPGEFLALLGPSGCGKTTLLR 44 (213)
T ss_pred EcCCcEEEEECCCCCCHHHHHH
Confidence 4578899999999999999763
No 326
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=82.31 E-value=0.57 Score=48.57 Aligned_cols=23 Identities=30% Similarity=0.328 Sum_probs=19.4
Q ss_pred HHcCCeEEEEecCCCCccccHHH
Q 038192 47 VNDNSAVIICGETGCGKTTQVPQ 69 (764)
Q Consensus 47 l~~~~vviI~GeTGSGKTTqvPq 69 (764)
+..++++.|.|+.||||||.+=.
T Consensus 23 i~~Ge~~~l~G~nGsGKSTLl~~ 45 (236)
T cd03219 23 VRPGEIHGLIGPNGAGKTTLFNL 45 (236)
T ss_pred ecCCcEEEEECCCCCCHHHHHHH
Confidence 46788999999999999997643
No 327
>PF01580 FtsK_SpoIIIE: FtsK/SpoIIIE family; InterPro: IPR002543 The FtsK/SpoIIIE domain is found extensively in a wide variety of proteins from prokaryotes and plasmids [] some of which contain up to three copies.The domain contains a putative ATP binding P-loop motif. A mutation in FtsK causes a temperature sensitive block in cell division and it is involved in peptidoglycan synthesis or modification []. The SpoIIIE protein is implicated in intercellular chromosomal DNA transfer []. ; GO: 0000166 nucleotide binding, 0003677 DNA binding, 0005524 ATP binding, 0007049 cell cycle, 0007059 chromosome segregation, 0051301 cell division, 0016021 integral to membrane; PDB: 2IUS_E 2IUU_A 2IUT_A.
Probab=82.29 E-value=1.2 Score=45.06 Aligned_cols=44 Identities=25% Similarity=0.462 Sum_probs=27.1
Q ss_pred cCCeEEEEecCCCCccccHHHHHHHhccCCCCCCCCCceEEEecccH
Q 038192 49 DNSAVIICGETGCGKTTQVPQFLFEAGFGSNRCSSRSGRIGVTQPRR 95 (764)
Q Consensus 49 ~~~vviI~GeTGSGKTTqvPq~Lle~~~~~~~~~~~~~~Ii~tQPRR 95 (764)
.+..++|.|.||||||+.+=-+++...... +.....+.+..|..
T Consensus 37 ~~~h~li~G~tgsGKS~~l~~ll~~l~~~~---~p~~~~l~iiD~k~ 80 (205)
T PF01580_consen 37 KNPHLLIAGATGSGKSTLLRTLLLSLALTY---SPDDVQLYIIDPKG 80 (205)
T ss_dssp GS-SEEEE--TTSSHHHHHHHHHHHHHTT-----TTTEEEEEE-TTS
T ss_pred CCceEEEEcCCCCCccHHHHHHHHHHHHHh---cCCccEEEEEcCCc
Confidence 445689999999999998776666544321 11247888888873
No 328
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=82.18 E-value=0.64 Score=46.82 Aligned_cols=16 Identities=44% Similarity=0.623 Sum_probs=14.0
Q ss_pred eEEEEecCCCCccccH
Q 038192 52 AVIICGETGCGKTTQV 67 (764)
Q Consensus 52 vviI~GeTGSGKTTqv 67 (764)
||-|+|++||||||.-
T Consensus 1 IIgI~G~sgSGKTTla 16 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLA 16 (194)
T ss_dssp EEEEEESTTSSHHHHH
T ss_pred CEEEECCCCCCHHHHH
Confidence 6789999999999853
No 329
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=82.17 E-value=0.57 Score=46.44 Aligned_cols=23 Identities=22% Similarity=0.504 Sum_probs=19.0
Q ss_pred HHcCCeEEEEecCCCCccccHHH
Q 038192 47 VNDNSAVIICGETGCGKTTQVPQ 69 (764)
Q Consensus 47 l~~~~vviI~GeTGSGKTTqvPq 69 (764)
+..++++.|.|++||||||.+=.
T Consensus 25 i~~Ge~~~i~G~nGsGKStLl~~ 47 (178)
T cd03247 25 LKQGEKIALLGRSGSGKSTLLQL 47 (178)
T ss_pred EcCCCEEEEECCCCCCHHHHHHH
Confidence 45688999999999999986543
No 330
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=82.16 E-value=0.56 Score=47.73 Aligned_cols=23 Identities=30% Similarity=0.540 Sum_probs=19.4
Q ss_pred HHcCCeEEEEecCCCCccccHHH
Q 038192 47 VNDNSAVIICGETGCGKTTQVPQ 69 (764)
Q Consensus 47 l~~~~vviI~GeTGSGKTTqvPq 69 (764)
|..++++.|.|+.||||||.+=.
T Consensus 25 i~~Ge~~~i~G~nGsGKSTLl~~ 47 (207)
T PRK13539 25 LAAGEALVLTGPNGSGKTTLLRL 47 (207)
T ss_pred EcCCCEEEEECCCCCCHHHHHHH
Confidence 45788999999999999997643
No 331
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=82.09 E-value=0.57 Score=48.04 Aligned_cols=23 Identities=30% Similarity=0.437 Sum_probs=19.4
Q ss_pred HHcCCeEEEEecCCCCccccHHH
Q 038192 47 VNDNSAVIICGETGCGKTTQVPQ 69 (764)
Q Consensus 47 l~~~~vviI~GeTGSGKTTqvPq 69 (764)
+..+.++.|.|+.||||||.+=.
T Consensus 23 i~~Ge~~~i~G~nGsGKSTLl~~ 45 (220)
T cd03265 23 VRRGEIFGLLGPNGAGKTTTIKM 45 (220)
T ss_pred ECCCCEEEEECCCCCCHHHHHHH
Confidence 45688999999999999997653
No 332
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=82.09 E-value=0.59 Score=46.14 Aligned_cols=22 Identities=32% Similarity=0.451 Sum_probs=18.5
Q ss_pred HHcCCeEEEEecCCCCccccHH
Q 038192 47 VNDNSAVIICGETGCGKTTQVP 68 (764)
Q Consensus 47 l~~~~vviI~GeTGSGKTTqvP 68 (764)
+..++++.|.|+.||||||.+=
T Consensus 23 i~~Ge~~~i~G~nGsGKStLl~ 44 (173)
T cd03230 23 VEKGEIYGLLGPNGAGKTTLIK 44 (173)
T ss_pred EcCCcEEEEECCCCCCHHHHHH
Confidence 4567899999999999999653
No 333
>PRK01184 hypothetical protein; Provisional
Probab=82.06 E-value=0.93 Score=45.03 Aligned_cols=18 Identities=22% Similarity=0.394 Sum_probs=15.1
Q ss_pred eEEEEecCCCCccccHHHH
Q 038192 52 AVIICGETGCGKTTQVPQF 70 (764)
Q Consensus 52 vviI~GeTGSGKTTqvPq~ 70 (764)
+++++|..||||||+ -.+
T Consensus 3 ~i~l~G~~GsGKsT~-a~~ 20 (184)
T PRK01184 3 IIGVVGMPGSGKGEF-SKI 20 (184)
T ss_pred EEEEECCCCCCHHHH-HHH
Confidence 688999999999995 453
No 334
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=82.05 E-value=0.59 Score=45.89 Aligned_cols=23 Identities=22% Similarity=0.515 Sum_probs=19.2
Q ss_pred HHcCCeEEEEecCCCCccccHHH
Q 038192 47 VNDNSAVIICGETGCGKTTQVPQ 69 (764)
Q Consensus 47 l~~~~vviI~GeTGSGKTTqvPq 69 (764)
+..++++.|.|+.||||||.+=.
T Consensus 24 i~~Ge~~~i~G~nGsGKSTLl~~ 46 (166)
T cd03223 24 IKPGDRLLITGPSGTGKSSLFRA 46 (166)
T ss_pred ECCCCEEEEECCCCCCHHHHHHH
Confidence 45788999999999999996543
No 335
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=82.01 E-value=0.57 Score=48.66 Aligned_cols=23 Identities=30% Similarity=0.436 Sum_probs=19.3
Q ss_pred HHcCCeEEEEecCCCCccccHHH
Q 038192 47 VNDNSAVIICGETGCGKTTQVPQ 69 (764)
Q Consensus 47 l~~~~vviI~GeTGSGKTTqvPq 69 (764)
+..++++.|.|+.||||||.+=.
T Consensus 24 i~~Ge~~~i~G~nGsGKSTLl~~ 46 (236)
T TIGR03864 24 VRPGEFVALLGPNGAGKSTLFSL 46 (236)
T ss_pred EcCCCEEEEECCCCCCHHHHHHH
Confidence 45789999999999999996643
No 336
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=81.96 E-value=0.58 Score=46.17 Aligned_cols=22 Identities=27% Similarity=0.525 Sum_probs=18.6
Q ss_pred HHcCCeEEEEecCCCCccccHH
Q 038192 47 VNDNSAVIICGETGCGKTTQVP 68 (764)
Q Consensus 47 l~~~~vviI~GeTGSGKTTqvP 68 (764)
+..++++.|.|+.||||||.+=
T Consensus 25 i~~Ge~~~i~G~nGsGKStLl~ 46 (173)
T cd03246 25 IEPGESLAIIGPSGSGKSTLAR 46 (173)
T ss_pred ECCCCEEEEECCCCCCHHHHHH
Confidence 3568899999999999998654
No 337
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=81.93 E-value=0.58 Score=48.25 Aligned_cols=22 Identities=32% Similarity=0.634 Sum_probs=18.9
Q ss_pred HHcCCeEEEEecCCCCccccHH
Q 038192 47 VNDNSAVIICGETGCGKTTQVP 68 (764)
Q Consensus 47 l~~~~vviI~GeTGSGKTTqvP 68 (764)
+..++++.|.|+.||||||.+=
T Consensus 33 i~~Ge~~~i~G~nGsGKSTLl~ 54 (228)
T PRK10584 33 VKRGETIALIGESGSGKSTLLA 54 (228)
T ss_pred EcCCCEEEEECCCCCCHHHHHH
Confidence 4568999999999999999654
No 338
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=81.93 E-value=0.58 Score=47.13 Aligned_cols=17 Identities=41% Similarity=0.573 Sum_probs=14.6
Q ss_pred eEEEEecCCCCccccHH
Q 038192 52 AVIICGETGCGKTTQVP 68 (764)
Q Consensus 52 vviI~GeTGSGKTTqvP 68 (764)
++.|+|++||||||..=
T Consensus 1 iigi~G~~GsGKSTl~~ 17 (198)
T cd02023 1 IIGIAGGSGSGKTTVAE 17 (198)
T ss_pred CEEEECCCCCCHHHHHH
Confidence 57899999999999763
No 339
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=81.92 E-value=1.9 Score=44.50 Aligned_cols=29 Identities=28% Similarity=0.403 Sum_probs=24.5
Q ss_pred HHcCCeEEEEecCCCCccccHHHHHHHhc
Q 038192 47 VNDNSAVIICGETGCGKTTQVPQFLFEAG 75 (764)
Q Consensus 47 l~~~~vviI~GeTGSGKTTqvPq~Lle~~ 75 (764)
+..+.+++|.|++||||||..-+++.+..
T Consensus 17 i~~G~~~~i~G~~G~GKT~l~~~~~~~~~ 45 (229)
T TIGR03881 17 IPRGFFVAVTGEPGTGKTIFCLHFAYKGL 45 (229)
T ss_pred CcCCeEEEEECCCCCChHHHHHHHHHHHH
Confidence 44578999999999999999999887643
No 340
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=81.83 E-value=0.62 Score=48.94 Aligned_cols=23 Identities=30% Similarity=0.505 Sum_probs=19.5
Q ss_pred HHcCCeEEEEecCCCCccccHHH
Q 038192 47 VNDNSAVIICGETGCGKTTQVPQ 69 (764)
Q Consensus 47 l~~~~vviI~GeTGSGKTTqvPq 69 (764)
+..+.++.|.|+.||||||.+=.
T Consensus 22 i~~Ge~~~i~G~NGsGKSTLlk~ 44 (246)
T cd03237 22 ISESEVIGILGPNGIGKTTFIKM 44 (246)
T ss_pred cCCCCEEEEECCCCCCHHHHHHH
Confidence 45688999999999999998754
No 341
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=81.82 E-value=0.52 Score=47.03 Aligned_cols=24 Identities=38% Similarity=0.536 Sum_probs=20.6
Q ss_pred HHHcCCeEEEEecCCCCccccHHH
Q 038192 46 AVNDNSAVIICGETGCGKTTQVPQ 69 (764)
Q Consensus 46 ~l~~~~vviI~GeTGSGKTTqvPq 69 (764)
.+..+.++.|.|+.||||||.+=.
T Consensus 21 ~i~~Ge~~~l~G~nGsGKSTLl~~ 44 (177)
T cd03222 21 VVKEGEVIGIVGPNGTGKTTAVKI 44 (177)
T ss_pred EECCCCEEEEECCCCChHHHHHHH
Confidence 567889999999999999997753
No 342
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=81.77 E-value=1.2 Score=51.61 Aligned_cols=28 Identities=29% Similarity=0.467 Sum_probs=24.9
Q ss_pred cCCeEEEEecCCCCccccHHHHHHHhcc
Q 038192 49 DNSAVIICGETGCGKTTQVPQFLFEAGF 76 (764)
Q Consensus 49 ~~~vviI~GeTGSGKTTqvPq~Lle~~~ 76 (764)
.+.+++|+|++||||||.--||+++...
T Consensus 20 ~g~~~Li~G~pGsGKT~la~qfl~~g~~ 47 (484)
T TIGR02655 20 IGRSTLVSGTSGTGKTLFSIQFLYNGII 47 (484)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 4789999999999999999999987654
No 343
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=81.75 E-value=0.6 Score=47.73 Aligned_cols=23 Identities=26% Similarity=0.546 Sum_probs=19.2
Q ss_pred HHcCCeEEEEecCCCCccccHHH
Q 038192 47 VNDNSAVIICGETGCGKTTQVPQ 69 (764)
Q Consensus 47 l~~~~vviI~GeTGSGKTTqvPq 69 (764)
+..++++.|.|+.||||||.+=.
T Consensus 26 i~~Ge~~~i~G~nGsGKSTLl~~ 48 (216)
T TIGR00960 26 ITKGEMVFLVGHSGAGKSTFLKL 48 (216)
T ss_pred EcCCCEEEEECCCCCCHHHHHHH
Confidence 45788999999999999996643
No 344
>smart00072 GuKc Guanylate kinase homologues. Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.
Probab=81.73 E-value=0.91 Score=45.34 Aligned_cols=24 Identities=25% Similarity=0.596 Sum_probs=20.2
Q ss_pred CCeEEEEecCCCCccccHHHHHHH
Q 038192 50 NSAVIICGETGCGKTTQVPQFLFE 73 (764)
Q Consensus 50 ~~vviI~GeTGSGKTTqvPq~Lle 73 (764)
...+|++|++||||+|+.-+.+-+
T Consensus 2 ~r~ivl~Gpsg~GK~tl~~~L~~~ 25 (184)
T smart00072 2 RRPIVLSGPSGVGKGTLLAELIQE 25 (184)
T ss_pred CcEEEEECCCCCCHHHHHHHHHhc
Confidence 357899999999999988877655
No 345
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=81.70 E-value=0.61 Score=47.48 Aligned_cols=22 Identities=36% Similarity=0.640 Sum_probs=18.7
Q ss_pred HHcCCeEEEEecCCCCccccHH
Q 038192 47 VNDNSAVIICGETGCGKTTQVP 68 (764)
Q Consensus 47 l~~~~vviI~GeTGSGKTTqvP 68 (764)
+..++++.|.|+.||||||.+=
T Consensus 23 i~~G~~~~l~G~nGsGKSTLl~ 44 (213)
T cd03262 23 VKKGEVVVIIGPSGSGKSTLLR 44 (213)
T ss_pred ECCCCEEEEECCCCCCHHHHHH
Confidence 4568999999999999998653
No 346
>PRK05480 uridine/cytidine kinase; Provisional
Probab=81.70 E-value=0.67 Score=47.19 Aligned_cols=19 Identities=37% Similarity=0.483 Sum_probs=16.2
Q ss_pred cCCeEEEEecCCCCccccH
Q 038192 49 DNSAVIICGETGCGKTTQV 67 (764)
Q Consensus 49 ~~~vviI~GeTGSGKTTqv 67 (764)
...+|.|+|++||||||..
T Consensus 5 ~~~iI~I~G~sGsGKTTl~ 23 (209)
T PRK05480 5 KPIIIGIAGGSGSGKTTVA 23 (209)
T ss_pred CCEEEEEECCCCCCHHHHH
Confidence 3457889999999999976
No 347
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=81.66 E-value=0.59 Score=49.06 Aligned_cols=23 Identities=30% Similarity=0.614 Sum_probs=19.5
Q ss_pred HHcCCeEEEEecCCCCccccHHH
Q 038192 47 VNDNSAVIICGETGCGKTTQVPQ 69 (764)
Q Consensus 47 l~~~~vviI~GeTGSGKTTqvPq 69 (764)
+..+.++.|.|++||||||.+=.
T Consensus 29 i~~Ge~~~i~G~nGsGKSTLl~~ 51 (253)
T PRK14242 29 FEQNQVTALIGPSGCGKSTFLRC 51 (253)
T ss_pred EeCCCEEEEECCCCCCHHHHHHH
Confidence 46789999999999999997643
No 348
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=81.62 E-value=0.65 Score=48.08 Aligned_cols=21 Identities=33% Similarity=0.616 Sum_probs=18.9
Q ss_pred HHcCCeEEEEecCCCCccccH
Q 038192 47 VNDNSAVIICGETGCGKTTQV 67 (764)
Q Consensus 47 l~~~~vviI~GeTGSGKTTqv 67 (764)
|..+.++.|.|+.||||||.+
T Consensus 18 i~~Ge~~~l~G~sGsGKSTL~ 38 (226)
T cd03270 18 IPRNKLVVITGVSGSGKSSLA 38 (226)
T ss_pred cCCCcEEEEEcCCCCCHHHHH
Confidence 466899999999999999986
No 349
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=81.61 E-value=0.62 Score=45.07 Aligned_cols=23 Identities=26% Similarity=0.489 Sum_probs=18.8
Q ss_pred HHcCCeEEEEecCCCCccccHHH
Q 038192 47 VNDNSAVIICGETGCGKTTQVPQ 69 (764)
Q Consensus 47 l~~~~vviI~GeTGSGKTTqvPq 69 (764)
+..++++.|.|++||||||.+=.
T Consensus 22 i~~g~~~~i~G~nGsGKStll~~ 44 (157)
T cd00267 22 LKAGEIVALVGPNGSGKSTLLRA 44 (157)
T ss_pred EcCCCEEEEECCCCCCHHHHHHH
Confidence 35678999999999999986543
No 350
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=81.59 E-value=0.61 Score=48.15 Aligned_cols=22 Identities=32% Similarity=0.496 Sum_probs=19.3
Q ss_pred HHcCCeEEEEecCCCCccccHH
Q 038192 47 VNDNSAVIICGETGCGKTTQVP 68 (764)
Q Consensus 47 l~~~~vviI~GeTGSGKTTqvP 68 (764)
+..++++.|.|+.||||||.+=
T Consensus 23 i~~Ge~~~l~G~nGsGKSTLl~ 44 (230)
T TIGR03410 23 VPKGEVTCVLGRNGVGKTTLLK 44 (230)
T ss_pred ECCCCEEEEECCCCCCHHHHHH
Confidence 4678999999999999998764
No 351
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=81.59 E-value=0.56 Score=48.11 Aligned_cols=22 Identities=36% Similarity=0.750 Sum_probs=18.9
Q ss_pred HHcCCeEEEEecCCCCccccHH
Q 038192 47 VNDNSAVIICGETGCGKTTQVP 68 (764)
Q Consensus 47 l~~~~vviI~GeTGSGKTTqvP 68 (764)
+..++++.|.|+.||||||.+=
T Consensus 27 i~~G~~~~i~G~nGsGKSTLl~ 48 (220)
T cd03293 27 VEEGEFVALVGPSGCGKSTLLR 48 (220)
T ss_pred EeCCcEEEEECCCCCCHHHHHH
Confidence 4568899999999999999763
No 352
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=81.59 E-value=0.6 Score=48.10 Aligned_cols=23 Identities=26% Similarity=0.589 Sum_probs=19.3
Q ss_pred HHcCCeEEEEecCCCCccccHHH
Q 038192 47 VNDNSAVIICGETGCGKTTQVPQ 69 (764)
Q Consensus 47 l~~~~vviI~GeTGSGKTTqvPq 69 (764)
+..++++.|.|+.||||||.+=-
T Consensus 23 i~~Ge~~~i~G~nGsGKSTLl~~ 45 (227)
T cd03260 23 IPKGEITALIGPSGCGKSTLLRL 45 (227)
T ss_pred EcCCCEEEEECCCCCCHHHHHHH
Confidence 45688999999999999997643
No 353
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=81.52 E-value=2.2 Score=52.16 Aligned_cols=15 Identities=47% Similarity=0.674 Sum_probs=12.5
Q ss_pred HHhccccCCCCC-CEE
Q 038192 515 AQRAGRAGRTAP-GHC 529 (764)
Q Consensus 515 ~QR~GRAGR~~~-G~c 529 (764)
.|=+|||||.|. |..
T Consensus 666 NQLRGRaGRQGDPGsS 681 (939)
T PRK12902 666 NQLRGRAGRQGDPGST 681 (939)
T ss_pred HHhhcccccCCCCCcc
Confidence 588999999995 864
No 354
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=81.47 E-value=0.75 Score=45.49 Aligned_cols=21 Identities=19% Similarity=0.439 Sum_probs=17.5
Q ss_pred CCeEEEEecCCCCccccHHHH
Q 038192 50 NSAVIICGETGCGKTTQVPQF 70 (764)
Q Consensus 50 ~~vviI~GeTGSGKTTqvPq~ 70 (764)
+++++++|..||||||..=.+
T Consensus 2 ~~~i~l~G~~gsGKst~a~~l 22 (175)
T cd00227 2 GRIIILNGGSSAGKSSIARAL 22 (175)
T ss_pred CCEEEEECCCCCCHHHHHHHH
Confidence 578999999999999875543
No 355
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=81.46 E-value=0.61 Score=48.87 Aligned_cols=22 Identities=32% Similarity=0.605 Sum_probs=19.0
Q ss_pred HHcCCeEEEEecCCCCccccHH
Q 038192 47 VNDNSAVIICGETGCGKTTQVP 68 (764)
Q Consensus 47 l~~~~vviI~GeTGSGKTTqvP 68 (764)
+..++++.|.|++||||||.+=
T Consensus 26 i~~Ge~~~i~G~nGsGKSTLl~ 47 (250)
T PRK14247 26 IPDNTITALMGPSGSGKSTLLR 47 (250)
T ss_pred EcCCCEEEEECCCCCCHHHHHH
Confidence 4578899999999999999764
No 356
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=81.36 E-value=0.64 Score=48.34 Aligned_cols=22 Identities=32% Similarity=0.436 Sum_probs=18.8
Q ss_pred HHcCCeEEEEecCCCCccccHH
Q 038192 47 VNDNSAVIICGETGCGKTTQVP 68 (764)
Q Consensus 47 l~~~~vviI~GeTGSGKTTqvP 68 (764)
+..+.++.|.|+.||||||.+=
T Consensus 23 i~~Ge~~~i~G~nGsGKSTLl~ 44 (243)
T TIGR01978 23 VKKGEIHAIMGPNGSGKSTLSK 44 (243)
T ss_pred EcCCCEEEEECCCCCCHHHHHH
Confidence 4578899999999999999654
No 357
>PRK06547 hypothetical protein; Provisional
Probab=81.35 E-value=1.1 Score=44.45 Aligned_cols=26 Identities=35% Similarity=0.461 Sum_probs=18.2
Q ss_pred HHHHHHcC--CeEEEEecCCCCccccHH
Q 038192 43 IMEAVNDN--SAVIICGETGCGKTTQVP 68 (764)
Q Consensus 43 Il~~l~~~--~vviI~GeTGSGKTTqvP 68 (764)
+...+..+ .+++|.|.+||||||..-
T Consensus 6 ~~~~~~~~~~~~i~i~G~~GsGKTt~a~ 33 (172)
T PRK06547 6 IAARLCGGGMITVLIDGRSGSGKTTLAG 33 (172)
T ss_pred HHHHhhcCCCEEEEEECCCCCCHHHHHH
Confidence 44444444 367788999999998653
No 358
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=81.34 E-value=0.62 Score=47.73 Aligned_cols=23 Identities=30% Similarity=0.533 Sum_probs=19.2
Q ss_pred HHcCCeEEEEecCCCCccccHHH
Q 038192 47 VNDNSAVIICGETGCGKTTQVPQ 69 (764)
Q Consensus 47 l~~~~vviI~GeTGSGKTTqvPq 69 (764)
+..++++.|.|+.||||||.+=.
T Consensus 28 i~~G~~~~i~G~nGsGKSTLl~~ 50 (221)
T TIGR02211 28 IGKGEIVAIVGSSGSGKSTLLHL 50 (221)
T ss_pred EcCCcEEEEECCCCCCHHHHHHH
Confidence 45689999999999999996543
No 359
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=81.30 E-value=0.62 Score=48.30 Aligned_cols=23 Identities=30% Similarity=0.478 Sum_probs=19.3
Q ss_pred HHcCCeEEEEecCCCCccccHHH
Q 038192 47 VNDNSAVIICGETGCGKTTQVPQ 69 (764)
Q Consensus 47 l~~~~vviI~GeTGSGKTTqvPq 69 (764)
+..+.++.|.|+.||||||.+=.
T Consensus 23 i~~Ge~~~l~G~nGsGKSTLl~~ 45 (235)
T cd03261 23 VRRGEILAIIGPSGSGKSTLLRL 45 (235)
T ss_pred EcCCCEEEEECCCCCCHHHHHHH
Confidence 46788999999999999996543
No 360
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=81.21 E-value=1.2 Score=48.58 Aligned_cols=32 Identities=25% Similarity=0.485 Sum_probs=23.8
Q ss_pred hHHHHHHHHHcCC--eEEEEecCCCCccccHHHH
Q 038192 39 MEQEIMEAVNDNS--AVIICGETGCGKTTQVPQF 70 (764)
Q Consensus 39 ~~~~Il~~l~~~~--vviI~GeTGSGKTTqvPq~ 70 (764)
..+.+..++..+. .+++.|++||||||..=.+
T Consensus 23 ~~~~L~~~~~~~~~~~lll~Gp~GtGKT~la~~~ 56 (337)
T PRK12402 23 VVERLSRAVDSPNLPHLLVQGPPGSGKTAAVRAL 56 (337)
T ss_pred HHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHH
Confidence 3455666666666 7899999999999765443
No 361
>PRK10908 cell division protein FtsE; Provisional
Probab=81.13 E-value=0.66 Score=47.68 Aligned_cols=23 Identities=22% Similarity=0.463 Sum_probs=19.6
Q ss_pred HHcCCeEEEEecCCCCccccHHH
Q 038192 47 VNDNSAVIICGETGCGKTTQVPQ 69 (764)
Q Consensus 47 l~~~~vviI~GeTGSGKTTqvPq 69 (764)
+..++++.|.|++||||||.+=.
T Consensus 25 i~~Ge~~~i~G~nGsGKSTLl~~ 47 (222)
T PRK10908 25 MRPGEMAFLTGHSGAGKSTLLKL 47 (222)
T ss_pred EcCCCEEEEECCCCCCHHHHHHH
Confidence 45789999999999999997654
No 362
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=81.07 E-value=0.64 Score=47.33 Aligned_cols=21 Identities=43% Similarity=0.887 Sum_probs=18.5
Q ss_pred HHcCCeEEEEecCCCCccccH
Q 038192 47 VNDNSAVIICGETGCGKTTQV 67 (764)
Q Consensus 47 l~~~~vviI~GeTGSGKTTqv 67 (764)
+..++++.|.|+.||||||.+
T Consensus 23 i~~Ge~~~l~G~nGsGKSTLl 43 (213)
T cd03301 23 IADGEFVVLLGPSGCGKTTTL 43 (213)
T ss_pred EcCCcEEEEECCCCCCHHHHH
Confidence 456889999999999999976
No 363
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=81.04 E-value=0.64 Score=47.17 Aligned_cols=22 Identities=36% Similarity=0.516 Sum_probs=18.9
Q ss_pred HHcCCeEEEEecCCCCccccHH
Q 038192 47 VNDNSAVIICGETGCGKTTQVP 68 (764)
Q Consensus 47 l~~~~vviI~GeTGSGKTTqvP 68 (764)
+..+.++.|.|++||||||.+=
T Consensus 24 i~~Ge~~~l~G~nGsGKSTLl~ 45 (204)
T PRK13538 24 LNAGELVQIEGPNGAGKTSLLR 45 (204)
T ss_pred ECCCcEEEEECCCCCCHHHHHH
Confidence 4578899999999999999664
No 364
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=80.96 E-value=0.66 Score=46.11 Aligned_cols=22 Identities=32% Similarity=0.486 Sum_probs=18.6
Q ss_pred HHcCCeEEEEecCCCCccccHH
Q 038192 47 VNDNSAVIICGETGCGKTTQVP 68 (764)
Q Consensus 47 l~~~~vviI~GeTGSGKTTqvP 68 (764)
+..++++.|.|+.||||||.+=
T Consensus 22 i~~G~~~~l~G~nGsGKStLl~ 43 (180)
T cd03214 22 IEAGEIVGILGPNGAGKSTLLK 43 (180)
T ss_pred ECCCCEEEEECCCCCCHHHHHH
Confidence 4568899999999999998654
No 365
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=80.91 E-value=0.8 Score=46.51 Aligned_cols=22 Identities=23% Similarity=0.368 Sum_probs=18.8
Q ss_pred CCeEEEEecCCCCccccHHHHH
Q 038192 50 NSAVIICGETGCGKTTQVPQFL 71 (764)
Q Consensus 50 ~~vviI~GeTGSGKTTqvPq~L 71 (764)
+++++|+|+.||||||.+-+..
T Consensus 25 g~~~~ltGpNg~GKSTllr~i~ 46 (199)
T cd03283 25 KNGILITGSNMSGKSTFLRTIG 46 (199)
T ss_pred CcEEEEECCCCCChHHHHHHHH
Confidence 5799999999999999876653
No 366
>cd01673 dNK Deoxyribonucleoside kinase (dNK) catalyzes the phosphorylation of deoxyribonucleosides to yield corresponding monophosphates (dNMPs). This family consists of various deoxynucleoside kinases including deoxyribo- cytidine (EC 2.7.1.74), guanosine (EC 2.7.1.113), adenosine (EC 2.7.1.76), and thymidine (EC 2.7.1.21) kinases. They are key enzymes in the salvage of deoxyribonucleosides originating from extra- or intracellular breakdown of DNA.
Probab=80.90 E-value=0.67 Score=46.40 Aligned_cols=18 Identities=28% Similarity=0.626 Sum_probs=15.6
Q ss_pred eEEEEecCCCCccccHHH
Q 038192 52 AVIICGETGCGKTTQVPQ 69 (764)
Q Consensus 52 vviI~GeTGSGKTTqvPq 69 (764)
+++|.|..||||||++-.
T Consensus 1 ~I~ieG~~GsGKSTl~~~ 18 (193)
T cd01673 1 VIVVEGNIGAGKSTLAKE 18 (193)
T ss_pred CEEEECCCCCCHHHHHHH
Confidence 478999999999999854
No 367
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=80.85 E-value=0.68 Score=47.32 Aligned_cols=22 Identities=32% Similarity=0.462 Sum_probs=18.8
Q ss_pred HHcCCeEEEEecCCCCccccHH
Q 038192 47 VNDNSAVIICGETGCGKTTQVP 68 (764)
Q Consensus 47 l~~~~vviI~GeTGSGKTTqvP 68 (764)
+..++++.|.|+.||||||.+=
T Consensus 28 i~~Ge~~~i~G~nGsGKSTLl~ 49 (218)
T cd03266 28 VKPGEVTGLLGPNGAGKTTTLR 49 (218)
T ss_pred EcCCcEEEEECCCCCCHHHHHH
Confidence 3568899999999999999773
No 368
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=80.81 E-value=0.67 Score=48.04 Aligned_cols=22 Identities=27% Similarity=0.589 Sum_probs=18.8
Q ss_pred HHcCCeEEEEecCCCCccccHH
Q 038192 47 VNDNSAVIICGETGCGKTTQVP 68 (764)
Q Consensus 47 l~~~~vviI~GeTGSGKTTqvP 68 (764)
+..+.++.|.|+.||||||.+=
T Consensus 32 i~~Ge~~~l~G~nGsGKSTLl~ 53 (233)
T PRK11629 32 IGEGEMMAIVGSSGSGKSTLLH 53 (233)
T ss_pred EcCCcEEEEECCCCCCHHHHHH
Confidence 4678899999999999999654
No 369
>TIGR02759 TraD_Ftype type IV conjugative transfer system coupling protein TraD. The TraD protein performs an essential coupling function in conjugative type IV secretion systems. This protein sits at the inner membrane in contact with the assembled pilus and its scaffold as well as the relaxosome-plasmid DNA complex (through TraM).
Probab=80.79 E-value=1.2 Score=52.65 Aligned_cols=38 Identities=21% Similarity=0.294 Sum_probs=27.4
Q ss_pred CCeEEEEecCCCCccccHHHHHHHhccCCCCCCCCCceEEEeccc
Q 038192 50 NSAVIICGETGCGKTTQVPQFLFEAGFGSNRCSSRSGRIGVTQPR 94 (764)
Q Consensus 50 ~~vviI~GeTGSGKTTqvPq~Lle~~~~~~~~~~~~~~Ii~tQPR 94 (764)
.+.++|.|.||||||+.+++.| +.....+ .+++|..|.
T Consensus 176 ~~h~li~G~tGsGKs~~i~~ll-~~~~~~g------~~~ii~D~~ 213 (566)
T TIGR02759 176 TQHILIHGTTGSGKSVAIRKLL-RWIRQRG------DRAIIYDKG 213 (566)
T ss_pred ccceEEEcCCCCCHHHHHHHHH-HHHHhcC------CeEEEEECC
Confidence 5568999999999999998865 4332222 367777775
No 370
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=80.76 E-value=0.69 Score=47.73 Aligned_cols=23 Identities=30% Similarity=0.608 Sum_probs=19.3
Q ss_pred HHcCCeEEEEecCCCCccccHHH
Q 038192 47 VNDNSAVIICGETGCGKTTQVPQ 69 (764)
Q Consensus 47 l~~~~vviI~GeTGSGKTTqvPq 69 (764)
+..++++.|.|+.||||||.+=.
T Consensus 30 i~~Ge~~~i~G~nGsGKSTLl~~ 52 (225)
T PRK10247 30 LRAGEFKLITGPSGCGKSTLLKI 52 (225)
T ss_pred EcCCCEEEEECCCCCCHHHHHHH
Confidence 45688999999999999997643
No 371
>PLN02165 adenylate isopentenyltransferase
Probab=80.74 E-value=0.74 Score=50.37 Aligned_cols=21 Identities=33% Similarity=0.570 Sum_probs=17.2
Q ss_pred cCCeEEEEecCCCCccccHHH
Q 038192 49 DNSAVIICGETGCGKTTQVPQ 69 (764)
Q Consensus 49 ~~~vviI~GeTGSGKTTqvPq 69 (764)
.+.+++|.|+|||||||..-.
T Consensus 42 ~g~iivIiGPTGSGKStLA~~ 62 (334)
T PLN02165 42 KDKVVVIMGATGSGKSRLSVD 62 (334)
T ss_pred CCCEEEEECCCCCcHHHHHHH
Confidence 346899999999999987644
No 372
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=80.74 E-value=0.69 Score=47.79 Aligned_cols=22 Identities=36% Similarity=0.465 Sum_probs=18.8
Q ss_pred HHcCCeEEEEecCCCCccccHH
Q 038192 47 VNDNSAVIICGETGCGKTTQVP 68 (764)
Q Consensus 47 l~~~~vviI~GeTGSGKTTqvP 68 (764)
+..++++.|.|+.||||||.+=
T Consensus 23 i~~Ge~~~l~G~nGsGKSTLl~ 44 (232)
T cd03218 23 VKQGEIVGLLGPNGAGKTTTFY 44 (232)
T ss_pred ecCCcEEEEECCCCCCHHHHHH
Confidence 4578899999999999999654
No 373
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=80.74 E-value=0.69 Score=48.06 Aligned_cols=23 Identities=30% Similarity=0.497 Sum_probs=19.2
Q ss_pred HHcCCeEEEEecCCCCccccHHH
Q 038192 47 VNDNSAVIICGETGCGKTTQVPQ 69 (764)
Q Consensus 47 l~~~~vviI~GeTGSGKTTqvPq 69 (764)
+..+.++.|.|+.||||||.+=.
T Consensus 24 i~~Ge~~~i~G~nGsGKSTLl~~ 46 (241)
T cd03256 24 INPGEFVALIGPSGAGKSTLLRC 46 (241)
T ss_pred EcCCCEEEEECCCCCCHHHHHHH
Confidence 45688999999999999986543
No 374
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=80.65 E-value=0.68 Score=47.40 Aligned_cols=22 Identities=36% Similarity=0.676 Sum_probs=18.8
Q ss_pred HHcCCeEEEEecCCCCccccHH
Q 038192 47 VNDNSAVIICGETGCGKTTQVP 68 (764)
Q Consensus 47 l~~~~vviI~GeTGSGKTTqvP 68 (764)
+..++++.|.|+.||||||.+=
T Consensus 34 i~~Ge~~~i~G~nGsGKSTLl~ 55 (214)
T PRK13543 34 VDAGEALLVQGDNGAGKTTLLR 55 (214)
T ss_pred ECCCCEEEEEcCCCCCHHHHHH
Confidence 4678899999999999998654
No 375
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=80.61 E-value=0.64 Score=46.73 Aligned_cols=23 Identities=35% Similarity=0.536 Sum_probs=19.2
Q ss_pred HHcCCeEEEEecCCCCccccHHH
Q 038192 47 VNDNSAVIICGETGCGKTTQVPQ 69 (764)
Q Consensus 47 l~~~~vviI~GeTGSGKTTqvPq 69 (764)
+..++++.|.|+.||||||.+=.
T Consensus 30 i~~Ge~~~l~G~nGsGKSTLl~~ 52 (192)
T cd03232 30 VKPGTLTALMGESGAGKTTLLDV 52 (192)
T ss_pred EeCCcEEEEECCCCCCHHHHHHH
Confidence 45688999999999999996643
No 376
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=80.60 E-value=0.7 Score=47.50 Aligned_cols=22 Identities=27% Similarity=0.539 Sum_probs=18.7
Q ss_pred HHcCCeEEEEecCCCCccccHH
Q 038192 47 VNDNSAVIICGETGCGKTTQVP 68 (764)
Q Consensus 47 l~~~~vviI~GeTGSGKTTqvP 68 (764)
+..++++.|.|+.||||||.+=
T Consensus 28 i~~Ge~~~i~G~nGsGKSTLl~ 49 (228)
T cd03257 28 IKKGETLGLVGESGSGKSTLAR 49 (228)
T ss_pred EcCCCEEEEECCCCCCHHHHHH
Confidence 4568999999999999998653
No 377
>PRK04841 transcriptional regulator MalT; Provisional
Probab=80.55 E-value=1.4 Score=55.00 Aligned_cols=49 Identities=31% Similarity=0.527 Sum_probs=34.6
Q ss_pred CCCCCCCCCCCCeeeccCChhHHHhhhcCCCchhhHHHHHHHH---HcCCeEEEEecCCCCccccHHHHHH
Q 038192 5 LPSSLQRPLAAPIVVHVSRPNEVENNRKDLPIVMMEQEIMEAV---NDNSAVIICGETGCGKTTQVPQFLF 72 (764)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~R~~LPi~~~~~~Il~~l---~~~~vviI~GeTGSGKTTqvPq~Ll 72 (764)
+++|+.+|..++..+ .|+ .+++.+ ...++++|+|+.|.||||.+-||+-
T Consensus 3 ~~~k~~~p~~~~~~~--~R~-----------------rl~~~l~~~~~~~~~~v~apaG~GKTtl~~~~~~ 54 (903)
T PRK04841 3 IPSKLSRPVRLHNTV--VRE-----------------RLLAKLSGANNYRLVLVTSPAGYGKTTLISQWAA 54 (903)
T ss_pred cccccCCCCCccccC--cch-----------------HHHHHHhcccCCCeEEEECCCCCCHHHHHHHHHH
Confidence 456777766666554 333 233333 3567999999999999999999984
No 378
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=80.51 E-value=0.85 Score=46.69 Aligned_cols=19 Identities=47% Similarity=0.929 Sum_probs=16.9
Q ss_pred cCCeEEEEecCCCCccccH
Q 038192 49 DNSAVIICGETGCGKTTQV 67 (764)
Q Consensus 49 ~~~vviI~GeTGSGKTTqv 67 (764)
++.++.|.|++||||||.+
T Consensus 27 ~~~~~~i~G~NGsGKSTll 45 (213)
T cd03279 27 NNGLFLICGPTGAGKSTIL 45 (213)
T ss_pred ccCEEEEECCCCCCHHHHH
Confidence 4678999999999999976
No 379
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=80.51 E-value=0.69 Score=47.56 Aligned_cols=22 Identities=36% Similarity=0.631 Sum_probs=18.9
Q ss_pred HHcCCeEEEEecCCCCccccHH
Q 038192 47 VNDNSAVIICGETGCGKTTQVP 68 (764)
Q Consensus 47 l~~~~vviI~GeTGSGKTTqvP 68 (764)
+..++++.|.|+.||||||.+=
T Consensus 31 i~~Ge~~~l~G~nGsGKSTLl~ 52 (224)
T TIGR02324 31 VNAGECVALSGPSGAGKSTLLK 52 (224)
T ss_pred ECCCCEEEEECCCCCCHHHHHH
Confidence 4578999999999999999664
No 380
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=80.48 E-value=0.96 Score=41.04 Aligned_cols=20 Identities=25% Similarity=0.607 Sum_probs=16.8
Q ss_pred EEEEecCCCCccccHHHHHH
Q 038192 53 VIICGETGCGKTTQVPQFLF 72 (764)
Q Consensus 53 viI~GeTGSGKTTqvPq~Ll 72 (764)
|+|.|+.||||||.+=.++-
T Consensus 2 I~V~G~~g~GKTsLi~~l~~ 21 (119)
T PF08477_consen 2 IVVLGDSGVGKTSLIRRLCG 21 (119)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHhc
Confidence 67889999999998877654
No 381
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=80.43 E-value=0.74 Score=48.21 Aligned_cols=22 Identities=41% Similarity=0.691 Sum_probs=19.0
Q ss_pred HHcCCeEEEEecCCCCccccHH
Q 038192 47 VNDNSAVIICGETGCGKTTQVP 68 (764)
Q Consensus 47 l~~~~vviI~GeTGSGKTTqvP 68 (764)
+..+.++.|.|++||||||.+=
T Consensus 26 i~~Ge~~~i~G~nGsGKSTLl~ 47 (250)
T PRK14262 26 IFKNQITAIIGPSGCGKTTLLR 47 (250)
T ss_pred ecCCCEEEEECCCCCCHHHHHH
Confidence 4578899999999999999764
No 382
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=80.42 E-value=0.69 Score=48.82 Aligned_cols=23 Identities=30% Similarity=0.686 Sum_probs=19.3
Q ss_pred HHcCCeEEEEecCCCCccccHHH
Q 038192 47 VNDNSAVIICGETGCGKTTQVPQ 69 (764)
Q Consensus 47 l~~~~vviI~GeTGSGKTTqvPq 69 (764)
|..++++.|.|+.||||||.+=.
T Consensus 24 i~~Ge~~~i~G~nGsGKSTLl~~ 46 (255)
T PRK11248 24 LESGELLVVLGPSGCGKTTLLNL 46 (255)
T ss_pred ECCCCEEEEECCCCCCHHHHHHH
Confidence 45689999999999999987643
No 383
>PRK14738 gmk guanylate kinase; Provisional
Probab=80.36 E-value=0.81 Score=46.68 Aligned_cols=25 Identities=28% Similarity=0.484 Sum_probs=19.0
Q ss_pred cCCeEEEEecCCCCccccHHHHHHHh
Q 038192 49 DNSAVIICGETGCGKTTQVPQFLFEA 74 (764)
Q Consensus 49 ~~~vviI~GeTGSGKTTqvPq~Lle~ 74 (764)
....++|+|+.||||||.+=+ |.+.
T Consensus 12 ~~~~ivi~GpsG~GK~tl~~~-L~~~ 36 (206)
T PRK14738 12 KPLLVVISGPSGVGKDAVLAR-MRER 36 (206)
T ss_pred CCeEEEEECcCCCCHHHHHHH-HHhc
Confidence 456789999999999997644 4443
No 384
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=80.33 E-value=0.7 Score=47.01 Aligned_cols=22 Identities=27% Similarity=0.472 Sum_probs=19.1
Q ss_pred HHcCCeEEEEecCCCCccccHH
Q 038192 47 VNDNSAVIICGETGCGKTTQVP 68 (764)
Q Consensus 47 l~~~~vviI~GeTGSGKTTqvP 68 (764)
+..++++.|.|+.||||||.+=
T Consensus 21 i~~Ge~~~l~G~nGsGKSTLl~ 42 (211)
T cd03298 21 FAQGEITAIVGPSGSGKSTLLN 42 (211)
T ss_pred EcCCCEEEEECCCCCCHHHHHH
Confidence 4678999999999999999763
No 385
>PRK08118 topology modulation protein; Reviewed
Probab=80.32 E-value=0.73 Score=45.44 Aligned_cols=15 Identities=40% Similarity=0.733 Sum_probs=13.0
Q ss_pred eEEEEecCCCCcccc
Q 038192 52 AVIICGETGCGKTTQ 66 (764)
Q Consensus 52 vviI~GeTGSGKTTq 66 (764)
-++|.|+.||||||.
T Consensus 3 rI~I~G~~GsGKSTl 17 (167)
T PRK08118 3 KIILIGSGGSGKSTL 17 (167)
T ss_pred EEEEECCCCCCHHHH
Confidence 378899999999974
No 386
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=80.26 E-value=0.71 Score=46.66 Aligned_cols=23 Identities=26% Similarity=0.393 Sum_probs=19.5
Q ss_pred HHcCCeEEEEecCCCCccccHHH
Q 038192 47 VNDNSAVIICGETGCGKTTQVPQ 69 (764)
Q Consensus 47 l~~~~vviI~GeTGSGKTTqvPq 69 (764)
+..+.++.|.|+.||||||.+=.
T Consensus 24 i~~Ge~~~l~G~nGsGKSTLl~~ 46 (200)
T PRK13540 24 LPAGGLLHLKGSNGAGKTTLLKL 46 (200)
T ss_pred ECCCCEEEEECCCCCCHHHHHHH
Confidence 45788999999999999997653
No 387
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=80.25 E-value=2 Score=49.41 Aligned_cols=29 Identities=28% Similarity=0.437 Sum_probs=24.8
Q ss_pred HHcCCeEEEEecCCCCccccHHHHHHHhc
Q 038192 47 VNDNSAVIICGETGCGKTTQVPQFLFEAG 75 (764)
Q Consensus 47 l~~~~vviI~GeTGSGKTTqvPq~Lle~~ 75 (764)
+..+.+++|.|++|+||||...|++.+..
T Consensus 91 i~~GsvilI~G~pGsGKTTL~lq~a~~~a 119 (454)
T TIGR00416 91 IVPGSLILIGGDPGIGKSTLLLQVACQLA 119 (454)
T ss_pred ccCCeEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 44578999999999999999999987644
No 388
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=80.22 E-value=0.72 Score=48.23 Aligned_cols=23 Identities=30% Similarity=0.677 Sum_probs=19.5
Q ss_pred HHcCCeEEEEecCCCCccccHHH
Q 038192 47 VNDNSAVIICGETGCGKTTQVPQ 69 (764)
Q Consensus 47 l~~~~vviI~GeTGSGKTTqvPq 69 (764)
+..++++.|.|++||||||.+=.
T Consensus 24 i~~Ge~~~i~G~nGsGKSTLl~~ 46 (247)
T TIGR00972 24 IPKNQVTALIGPSGCGKSTLLRS 46 (247)
T ss_pred ECCCCEEEEECCCCCCHHHHHHH
Confidence 46789999999999999997643
No 389
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=80.18 E-value=0.74 Score=47.65 Aligned_cols=22 Identities=23% Similarity=0.499 Sum_probs=18.8
Q ss_pred HHcCCeEEEEecCCCCccccHH
Q 038192 47 VNDNSAVIICGETGCGKTTQVP 68 (764)
Q Consensus 47 l~~~~vviI~GeTGSGKTTqvP 68 (764)
+..++++.|.|+.||||||.+=
T Consensus 9 i~~Ge~~~i~G~nGsGKSTLl~ 30 (230)
T TIGR02770 9 LKRGEVLALVGESGSGKSLTCL 30 (230)
T ss_pred EcCCCEEEEECCCCCCHHHHHH
Confidence 4578899999999999998654
No 390
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=80.17 E-value=0.72 Score=47.21 Aligned_cols=23 Identities=30% Similarity=0.498 Sum_probs=19.5
Q ss_pred HHcCCeEEEEecCCCCccccHHH
Q 038192 47 VNDNSAVIICGETGCGKTTQVPQ 69 (764)
Q Consensus 47 l~~~~vviI~GeTGSGKTTqvPq 69 (764)
+..++++.|.|+.||||||.+=.
T Consensus 27 i~~G~~~~i~G~nGsGKSTLl~~ 49 (220)
T cd03245 27 IRAGEKVAIIGRVGSGKSTLLKL 49 (220)
T ss_pred EcCCCEEEEECCCCCCHHHHHHH
Confidence 46789999999999999997643
No 391
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=80.12 E-value=0.74 Score=47.91 Aligned_cols=22 Identities=32% Similarity=0.522 Sum_probs=18.7
Q ss_pred HHcCCeEEEEecCCCCccccHH
Q 038192 47 VNDNSAVIICGETGCGKTTQVP 68 (764)
Q Consensus 47 l~~~~vviI~GeTGSGKTTqvP 68 (764)
+..++++.|.|+.||||||.+=
T Consensus 25 i~~Ge~~~i~G~nGsGKSTLl~ 46 (239)
T cd03296 25 IPSGELVALLGPSGSGKTTLLR 46 (239)
T ss_pred EcCCCEEEEECCCCCCHHHHHH
Confidence 4568999999999999999654
No 392
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=80.08 E-value=0.75 Score=48.60 Aligned_cols=23 Identities=30% Similarity=0.657 Sum_probs=19.6
Q ss_pred HHcCCeEEEEecCCCCccccHHH
Q 038192 47 VNDNSAVIICGETGCGKTTQVPQ 69 (764)
Q Consensus 47 l~~~~vviI~GeTGSGKTTqvPq 69 (764)
|..++++.|.|++||||||.+=.
T Consensus 36 i~~Ge~~~i~G~nGsGKSTLl~~ 58 (260)
T PRK10744 36 IAKNQVTAFIGPSGCGKSTLLRT 58 (260)
T ss_pred EcCCCEEEEECCCCCCHHHHHHH
Confidence 46789999999999999987643
No 393
>PRK10646 ADP-binding protein; Provisional
Probab=80.07 E-value=1.1 Score=43.67 Aligned_cols=31 Identities=26% Similarity=0.486 Sum_probs=24.6
Q ss_pred HHHHHHHHHcCCeEEEEecCCCCccccHHHH
Q 038192 40 EQEIMEAVNDNSAVIICGETGCGKTTQVPQF 70 (764)
Q Consensus 40 ~~~Il~~l~~~~vviI~GeTGSGKTTqvPq~ 70 (764)
-+.|-..+..++|+++.|+-|+||||.+=-+
T Consensus 18 ~~~la~~l~~g~vi~L~GdLGaGKTtf~rgl 48 (153)
T PRK10646 18 GARVAKACDGATVIYLYGDLGAGKTTFSRGF 48 (153)
T ss_pred HHHHHHhCCCCcEEEEECCCCCCHHHHHHHH
Confidence 3456677788999999999999999866433
No 394
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=80.07 E-value=0.76 Score=48.08 Aligned_cols=22 Identities=27% Similarity=0.635 Sum_probs=18.8
Q ss_pred HHcCCeEEEEecCCCCccccHH
Q 038192 47 VNDNSAVIICGETGCGKTTQVP 68 (764)
Q Consensus 47 l~~~~vviI~GeTGSGKTTqvP 68 (764)
|..+..+++.|+.||||||.+-
T Consensus 24 I~~gef~vliGpSGsGKTTtLk 45 (309)
T COG1125 24 IEEGEFLVLIGPSGSGKTTTLK 45 (309)
T ss_pred ecCCeEEEEECCCCCcHHHHHH
Confidence 4667889999999999999864
No 395
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=79.96 E-value=0.73 Score=46.47 Aligned_cols=23 Identities=35% Similarity=0.510 Sum_probs=19.2
Q ss_pred HHcCCeEEEEecCCCCccccHHH
Q 038192 47 VNDNSAVIICGETGCGKTTQVPQ 69 (764)
Q Consensus 47 l~~~~vviI~GeTGSGKTTqvPq 69 (764)
+..+.++.|.|+.||||||.+=.
T Consensus 23 i~~Ge~~~i~G~nGsGKSTLl~~ 45 (198)
T TIGR01189 23 LNAGEALQVTGPNGIGKTTLLRI 45 (198)
T ss_pred EcCCcEEEEECCCCCCHHHHHHH
Confidence 45688999999999999987643
No 396
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=79.91 E-value=1.4 Score=48.64 Aligned_cols=19 Identities=26% Similarity=0.482 Sum_probs=16.4
Q ss_pred CCeEEEEecCCCCccccHH
Q 038192 50 NSAVIICGETGCGKTTQVP 68 (764)
Q Consensus 50 ~~vviI~GeTGSGKTTqvP 68 (764)
++++++.|++||||||..=
T Consensus 78 r~il~L~GPPGsGKStla~ 96 (361)
T smart00763 78 KQILYLLGPVGGGKSSLVE 96 (361)
T ss_pred CcEEEEECCCCCCHHHHHH
Confidence 6899999999999997543
No 397
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=79.85 E-value=0.77 Score=46.56 Aligned_cols=23 Identities=22% Similarity=0.270 Sum_probs=18.9
Q ss_pred cCCeEEEEecCCCCccccHHHHH
Q 038192 49 DNSAVIICGETGCGKTTQVPQFL 71 (764)
Q Consensus 49 ~~~vviI~GeTGSGKTTqvPq~L 71 (764)
.+++++|+|+.||||||.+=.+.
T Consensus 28 ~~~~~~l~G~Ng~GKStll~~i~ 50 (202)
T cd03243 28 SGRLLLITGPNMGGKSTYLRSIG 50 (202)
T ss_pred CCeEEEEECCCCCccHHHHHHHH
Confidence 45789999999999999865543
No 398
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=79.82 E-value=2.3 Score=44.12 Aligned_cols=28 Identities=32% Similarity=0.437 Sum_probs=24.6
Q ss_pred cCCeEEEEecCCCCccccHHHHHHHhcc
Q 038192 49 DNSAVIICGETGCGKTTQVPQFLFEAGF 76 (764)
Q Consensus 49 ~~~vviI~GeTGSGKTTqvPq~Lle~~~ 76 (764)
.+.+++|.|++||||||..-||+++...
T Consensus 24 ~g~~~~i~G~~GsGKt~l~~~~~~~~~~ 51 (234)
T PRK06067 24 FPSLILIEGDHGTGKSVLSQQFVYGALK 51 (234)
T ss_pred CCcEEEEECCCCCChHHHHHHHHHHHHh
Confidence 4789999999999999999999987643
No 399
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=79.78 E-value=0.77 Score=45.20 Aligned_cols=23 Identities=30% Similarity=0.524 Sum_probs=19.2
Q ss_pred HHcCCeEEEEecCCCCccccHHH
Q 038192 47 VNDNSAVIICGETGCGKTTQVPQ 69 (764)
Q Consensus 47 l~~~~vviI~GeTGSGKTTqvPq 69 (764)
+..++++.|.|+.||||||.+--
T Consensus 25 i~~G~~~~l~G~nGsGKstLl~~ 47 (171)
T cd03228 25 IKPGEKVAIVGPSGSGKSTLLKL 47 (171)
T ss_pred EcCCCEEEEECCCCCCHHHHHHH
Confidence 45688999999999999986543
No 400
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=79.72 E-value=0.79 Score=47.51 Aligned_cols=23 Identities=26% Similarity=0.640 Sum_probs=19.2
Q ss_pred HHcCCeEEEEecCCCCccccHHH
Q 038192 47 VNDNSAVIICGETGCGKTTQVPQ 69 (764)
Q Consensus 47 l~~~~vviI~GeTGSGKTTqvPq 69 (764)
+..+.++.|.|+.||||||.+=.
T Consensus 8 i~~Ge~~~i~G~nGsGKSTLl~~ 30 (230)
T TIGR01184 8 IQQGEFISLIGHSGCGKSTLLNL 30 (230)
T ss_pred EcCCCEEEEECCCCCCHHHHHHH
Confidence 45688999999999999996543
No 401
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=79.71 E-value=0.77 Score=45.68 Aligned_cols=22 Identities=32% Similarity=0.361 Sum_probs=18.5
Q ss_pred HHcCCeEEEEecCCCCccccHH
Q 038192 47 VNDNSAVIICGETGCGKTTQVP 68 (764)
Q Consensus 47 l~~~~vviI~GeTGSGKTTqvP 68 (764)
+..++++.|.|+.||||||.+=
T Consensus 23 i~~G~~~~i~G~nGsGKSTLl~ 44 (182)
T cd03215 23 VRAGEIVGIAGLVGNGQTELAE 44 (182)
T ss_pred EcCCcEEEEECCCCCCHHHHHH
Confidence 4568899999999999998653
No 402
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=79.71 E-value=0.78 Score=48.20 Aligned_cols=23 Identities=35% Similarity=0.645 Sum_probs=19.6
Q ss_pred HHcCCeEEEEecCCCCccccHHH
Q 038192 47 VNDNSAVIICGETGCGKTTQVPQ 69 (764)
Q Consensus 47 l~~~~vviI~GeTGSGKTTqvPq 69 (764)
+..++++.|.|++||||||.+=.
T Consensus 30 i~~Ge~~~i~G~nGsGKSTLl~~ 52 (254)
T PRK14273 30 ILKNSITALIGPSGCGKSTFLRT 52 (254)
T ss_pred EcCCCEEEEECCCCCCHHHHHHH
Confidence 56789999999999999997643
No 403
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=79.69 E-value=0.78 Score=47.80 Aligned_cols=23 Identities=17% Similarity=0.475 Sum_probs=19.3
Q ss_pred HHcCCeEEEEecCCCCccccHHH
Q 038192 47 VNDNSAVIICGETGCGKTTQVPQ 69 (764)
Q Consensus 47 l~~~~vviI~GeTGSGKTTqvPq 69 (764)
+..++++.|.|+.||||||.+=.
T Consensus 25 i~~Ge~~~i~G~nGsGKSTLl~~ 47 (242)
T PRK11124 25 CPQGETLVLLGPSGAGKSSLLRV 47 (242)
T ss_pred EcCCCEEEEECCCCCCHHHHHHH
Confidence 35688999999999999987643
No 404
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=79.67 E-value=0.73 Score=46.75 Aligned_cols=22 Identities=27% Similarity=0.492 Sum_probs=18.8
Q ss_pred HHcCCeEEEEecCCCCccccHH
Q 038192 47 VNDNSAVIICGETGCGKTTQVP 68 (764)
Q Consensus 47 l~~~~vviI~GeTGSGKTTqvP 68 (764)
+..++++.|.|+.||||||.+=
T Consensus 30 i~~Ge~~~i~G~nGsGKSTLl~ 51 (202)
T cd03233 30 VKPGEMVLVLGRPGSGCSTLLK 51 (202)
T ss_pred ECCCcEEEEECCCCCCHHHHHH
Confidence 4678899999999999999653
No 405
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=79.67 E-value=0.76 Score=48.22 Aligned_cols=22 Identities=32% Similarity=0.493 Sum_probs=18.8
Q ss_pred HHcCCeEEEEecCCCCccccHH
Q 038192 47 VNDNSAVIICGETGCGKTTQVP 68 (764)
Q Consensus 47 l~~~~vviI~GeTGSGKTTqvP 68 (764)
+..++++.|.|++||||||.+=
T Consensus 26 i~~Ge~~~i~G~nGsGKSTLl~ 47 (253)
T TIGR02323 26 LYPGEVLGIVGESGSGKSTLLG 47 (253)
T ss_pred EeCCcEEEEECCCCCCHHHHHH
Confidence 4678899999999999999654
No 406
>PF02689 Herpes_Helicase: Helicase; InterPro: IPR003840 This entry consists of DNA helicases from a number of different organisms.; GO: 0004386 helicase activity, 0005524 ATP binding
Probab=79.66 E-value=2.2 Score=50.82 Aligned_cols=45 Identities=29% Similarity=0.330 Sum_probs=36.9
Q ss_pred CCeEEEEecCCCCccccHHHHHHHhccCCCCCCCCCceEEEecccHHHHHHHHHHHH
Q 038192 50 NSAVIICGETGCGKTTQVPQFLFEAGFGSNRCSSRSGRIGVTQPRRVAVLATAKRVA 106 (764)
Q Consensus 50 ~~vviI~GeTGSGKTTqvPq~Lle~~~~~~~~~~~~~~Ii~tQPRRiaAisvA~RVa 106 (764)
-.+.+|+|--|+||||-| |-|.+. -..+||=.+|+||..+...+.
T Consensus 59 F~~ylITGtAGaGKStsI-q~L~~~-----------ldCviTGaT~vAaQNls~~L~ 103 (818)
T PF02689_consen 59 FSVYLITGTAGAGKSTSI-QTLAEN-----------LDCVITGATVVAAQNLSSKLS 103 (818)
T ss_pred eEEEEEeccCCCCccchH-HHHHhh-----------hCeEEecchhhhHhHHHHHhc
Confidence 357899999999999987 455554 257899999999999988776
No 407
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=79.59 E-value=0.8 Score=48.47 Aligned_cols=22 Identities=32% Similarity=0.691 Sum_probs=19.1
Q ss_pred HHcCCeEEEEecCCCCccccHH
Q 038192 47 VNDNSAVIICGETGCGKTTQVP 68 (764)
Q Consensus 47 l~~~~vviI~GeTGSGKTTqvP 68 (764)
+..+.++.|.|+.||||||.+=
T Consensus 35 i~~Ge~~~I~G~NGsGKSTLlk 56 (257)
T PRK11247 35 IPAGQFVAVVGRSGCGKSTLLR 56 (257)
T ss_pred EcCCCEEEEECCCCCCHHHHHH
Confidence 4678899999999999999764
No 408
>PF01935 DUF87: Domain of unknown function DUF87; InterPro: IPR002789 The function of this domain is unknown. It contains several conserved aspartates and histidines that could be metal ligands.
Probab=79.56 E-value=1.8 Score=44.61 Aligned_cols=53 Identities=25% Similarity=0.401 Sum_probs=33.2
Q ss_pred cCCCchhhHHHHHHHHHcCCeEEEEecCCCCccccHHHHHHHhccCCCCCCCCCceEEEecccH
Q 038192 32 KDLPIVMMEQEIMEAVNDNSAVIICGETGCGKTTQVPQFLFEAGFGSNRCSSRSGRIGVTQPRR 95 (764)
Q Consensus 32 ~~LPi~~~~~~Il~~l~~~~vviI~GeTGSGKTTqvPq~Lle~~~~~~~~~~~~~~Ii~tQPRR 95 (764)
...|++---++++ ++.+.|.|.||||||+.+-..+.+-.-.. ...++|.-|.-
T Consensus 10 ~~v~v~l~~~~l~-----~~H~~I~G~TGsGKS~~~~~ll~~l~~~~------~~~~ii~D~~G 62 (229)
T PF01935_consen 10 SDVPVYLDLNKLF-----NRHIAIFGTTGSGKSNTVKVLLEELLKKK------GAKVIIFDPHG 62 (229)
T ss_pred CCceEEeeHHHhc-----cceEEEECCCCCCHHHHHHHHHHHHHhcC------CCCEEEEcCCC
Confidence 3455554433332 24578899999999998877665543121 24677777764
No 409
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=79.50 E-value=0.79 Score=44.84 Aligned_cols=23 Identities=30% Similarity=0.460 Sum_probs=19.7
Q ss_pred HHcCCeEEEEecCCCCccccHHH
Q 038192 47 VNDNSAVIICGETGCGKTTQVPQ 69 (764)
Q Consensus 47 l~~~~vviI~GeTGSGKTTqvPq 69 (764)
+..++++.|.|+.||||||.+=.
T Consensus 23 i~~Ge~~~l~G~nGsGKSTLl~~ 45 (163)
T cd03216 23 VRRGEVHALLGENGAGKSTLMKI 45 (163)
T ss_pred EeCCCEEEEECCCCCCHHHHHHH
Confidence 46789999999999999997653
No 410
>TIGR00041 DTMP_kinase thymidylate kinase. Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.
Probab=79.45 E-value=0.89 Score=45.50 Aligned_cols=20 Identities=40% Similarity=0.501 Sum_probs=17.3
Q ss_pred CCeEEEEecCCCCccccHHH
Q 038192 50 NSAVIICGETGCGKTTQVPQ 69 (764)
Q Consensus 50 ~~vviI~GeTGSGKTTqvPq 69 (764)
+..|+|.|..|||||||.=.
T Consensus 3 g~~IvieG~~GsGKsT~~~~ 22 (195)
T TIGR00041 3 GMFIVIEGIDGAGKTTQANL 22 (195)
T ss_pred ceEEEEECCCCCCHHHHHHH
Confidence 56789999999999998755
No 411
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=79.44 E-value=0.78 Score=48.68 Aligned_cols=23 Identities=26% Similarity=0.664 Sum_probs=19.4
Q ss_pred HHcCCeEEEEecCCCCccccHHH
Q 038192 47 VNDNSAVIICGETGCGKTTQVPQ 69 (764)
Q Consensus 47 l~~~~vviI~GeTGSGKTTqvPq 69 (764)
+..++++.|.|++||||||.+=.
T Consensus 44 i~~Ge~~~i~G~nGsGKSTLl~~ 66 (268)
T PRK14248 44 IEKHAVTALIGPSGCGKSTFLRS 66 (268)
T ss_pred EcCCCEEEEECCCCCCHHHHHHH
Confidence 45789999999999999997643
No 412
>PTZ00301 uridine kinase; Provisional
Probab=79.39 E-value=0.86 Score=46.77 Aligned_cols=17 Identities=29% Similarity=0.575 Sum_probs=14.3
Q ss_pred CeEEEEecCCCCccccH
Q 038192 51 SAVIICGETGCGKTTQV 67 (764)
Q Consensus 51 ~vviI~GeTGSGKTTqv 67 (764)
-+|-|+|++||||||.-
T Consensus 4 ~iIgIaG~SgSGKTTla 20 (210)
T PTZ00301 4 TVIGISGASGSGKSSLS 20 (210)
T ss_pred EEEEEECCCcCCHHHHH
Confidence 36789999999999854
No 413
>PRK09087 hypothetical protein; Validated
Probab=79.38 E-value=1.4 Score=45.74 Aligned_cols=22 Identities=27% Similarity=0.522 Sum_probs=17.9
Q ss_pred CCeEEEEecCCCCccccHHHHH
Q 038192 50 NSAVIICGETGCGKTTQVPQFL 71 (764)
Q Consensus 50 ~~vviI~GeTGSGKTTqvPq~L 71 (764)
++.++|.|++|||||+.+=.+.
T Consensus 44 ~~~l~l~G~~GsGKThLl~~~~ 65 (226)
T PRK09087 44 SPVVVLAGPVGSGKTHLASIWR 65 (226)
T ss_pred CCeEEEECCCCCCHHHHHHHHH
Confidence 6678999999999998765433
No 414
>PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP-dependent manner [,]. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the IPR0011545 from INTERPRO.; GO: 0005524 ATP binding, 0017038 protein import, 0016020 membrane; PDB: 1NL3_B 1NKT_B 3DIN_B 3JUX_A 2FSG_B 2VDA_A 2FSH_A 2FSF_A 2FSI_A 3BXZ_A ....
Probab=79.26 E-value=1 Score=47.84 Aligned_cols=102 Identities=19% Similarity=0.113 Sum_probs=56.4
Q ss_pred hcCCCchhhHHHHHHHHHcCCeEEEEecCCCCccccHHHHHHHhccCCCCCCCCCceEEEecccHHHHHHHHHHHHHHhC
Q 038192 31 RKDLPIVMMEQEIMEAVNDNSAVIICGETGCGKTTQVPQFLFEAGFGSNRCSSRSGRIGVTQPRRVAVLATAKRVAFELG 110 (764)
Q Consensus 31 R~~LPi~~~~~~Il~~l~~~~vviI~GeTGSGKTTqvPq~Lle~~~~~~~~~~~~~~Ii~tQPRRiaAisvA~RVa~E~g 110 (764)
++.+-...+--+++-++.-++--|+.=.||=|||..+....+=.++... .+-|+++-+ .+|+|=+++++
T Consensus 71 ~r~~g~~p~~vQll~~l~L~~G~laEm~TGEGKTli~~l~a~~~AL~G~-----~V~vvT~Nd------yLA~RD~~~~~ 139 (266)
T PF07517_consen 71 RRTLGLRPYDVQLLGALALHKGRLAEMKTGEGKTLIAALPAALNALQGK-----GVHVVTSND------YLAKRDAEEMR 139 (266)
T ss_dssp HHHTS----HHHHHHHHHHHTTSEEEESTTSHHHHHHHHHHHHHHTTSS------EEEEESSH------HHHHHHHHHHH
T ss_pred HHHcCCcccHHHHhhhhhcccceeEEecCCCCcHHHHHHHHHHHHHhcC-----CcEEEeccH------HHhhccHHHHH
Confidence 3455555666666666543333377778999999765544433344322 245544332 35566555554
Q ss_pred ---CCCCCEeeEEeccCcccC----CCceEEEEchHHHHH
Q 038192 111 ---LHLGKEVGFQVRHDKKIG----DSCSIKFMTDGILLR 143 (764)
Q Consensus 111 ---~~lG~~VGY~ir~e~~~s----~~t~I~f~T~GiLLr 143 (764)
+.+|-+||+.....+... =...|+|+|.+-|-.
T Consensus 140 ~~y~~LGlsv~~~~~~~~~~~r~~~Y~~dI~Y~t~~~~~f 179 (266)
T PF07517_consen 140 PFYEFLGLSVGIITSDMSSEERREAYAADIVYGTNSEFGF 179 (266)
T ss_dssp HHHHHTT--EEEEETTTEHHHHHHHHHSSEEEEEHHHHHH
T ss_pred HHHHHhhhccccCccccCHHHHHHHHhCcccccccchhhH
Confidence 367889999776544211 135699999987764
No 415
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=79.21 E-value=0.82 Score=46.80 Aligned_cols=22 Identities=32% Similarity=0.453 Sum_probs=18.7
Q ss_pred HHcCCeEEEEecCCCCccccHH
Q 038192 47 VNDNSAVIICGETGCGKTTQVP 68 (764)
Q Consensus 47 l~~~~vviI~GeTGSGKTTqvP 68 (764)
+..++++.|.|+.||||||.+=
T Consensus 25 i~~Ge~~~i~G~nGsGKSTLl~ 46 (220)
T cd03263 25 VYKGEIFGLLGHNGAGKTTTLK 46 (220)
T ss_pred EcCCcEEEEECCCCCCHHHHHH
Confidence 4678899999999999998653
No 416
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=79.18 E-value=0.8 Score=49.22 Aligned_cols=24 Identities=29% Similarity=0.509 Sum_probs=19.9
Q ss_pred HHcCCeEEEEecCCCCccccHHHH
Q 038192 47 VNDNSAVIICGETGCGKTTQVPQF 70 (764)
Q Consensus 47 l~~~~vviI~GeTGSGKTTqvPq~ 70 (764)
|..++++.|.|++||||||.+=..
T Consensus 30 i~~Ge~~~i~G~nGsGKSTLl~~L 53 (286)
T PRK13646 30 FEQGKYYAIVGQTGSGKSTLIQNI 53 (286)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHH
Confidence 456889999999999999976543
No 417
>KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only]
Probab=79.17 E-value=0.91 Score=52.41 Aligned_cols=21 Identities=38% Similarity=0.811 Sum_probs=18.2
Q ss_pred HHcCCeEEEEecCCCCccccH
Q 038192 47 VNDNSAVIICGETGCGKTTQV 67 (764)
Q Consensus 47 l~~~~vviI~GeTGSGKTTqv 67 (764)
|.+++.++|+|++|||||..+
T Consensus 458 V~~g~~LLItG~sG~GKtSLl 478 (659)
T KOG0060|consen 458 VPSGQNLLITGPSGCGKTSLL 478 (659)
T ss_pred ecCCCeEEEECCCCCchhHHH
Confidence 467899999999999999654
No 418
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=79.13 E-value=0.84 Score=47.06 Aligned_cols=22 Identities=41% Similarity=0.638 Sum_probs=18.7
Q ss_pred HHcCCeEEEEecCCCCccccHH
Q 038192 47 VNDNSAVIICGETGCGKTTQVP 68 (764)
Q Consensus 47 l~~~~vviI~GeTGSGKTTqvP 68 (764)
+..++++.|.|+.||||||.+=
T Consensus 26 i~~G~~~~i~G~nGsGKSTLl~ 47 (229)
T cd03254 26 IKPGETVAIVGPTGAGKTTLIN 47 (229)
T ss_pred EcCCCEEEEECCCCCCHHHHHH
Confidence 4568899999999999999654
No 419
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=79.12 E-value=0.88 Score=48.03 Aligned_cols=21 Identities=33% Similarity=0.809 Sum_probs=18.2
Q ss_pred HHHcCCeEEEEecCCCCcccc
Q 038192 46 AVNDNSAVIICGETGCGKTTQ 66 (764)
Q Consensus 46 ~l~~~~vviI~GeTGSGKTTq 66 (764)
.|..+.++-+.||.||||||.
T Consensus 35 ~i~~ge~~glVGESG~GKSTl 55 (268)
T COG4608 35 SIKEGETLGLVGESGCGKSTL 55 (268)
T ss_pred EEcCCCEEEEEecCCCCHHHH
Confidence 356788999999999999985
No 420
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=79.12 E-value=0.83 Score=47.79 Aligned_cols=23 Identities=39% Similarity=0.518 Sum_probs=19.3
Q ss_pred HHcCCeEEEEecCCCCccccHHH
Q 038192 47 VNDNSAVIICGETGCGKTTQVPQ 69 (764)
Q Consensus 47 l~~~~vviI~GeTGSGKTTqvPq 69 (764)
+..++++.|.|++||||||.+=.
T Consensus 26 i~~Ge~~~i~G~nGsGKSTLl~~ 48 (250)
T PRK11264 26 VKPGEVVAIIGPSGSGKTTLLRC 48 (250)
T ss_pred EcCCCEEEEECCCCCCHHHHHHH
Confidence 45688999999999999997643
No 421
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=79.12 E-value=0.83 Score=45.56 Aligned_cols=18 Identities=44% Similarity=0.575 Sum_probs=15.0
Q ss_pred eEEEEecCCCCccccHHH
Q 038192 52 AVIICGETGCGKTTQVPQ 69 (764)
Q Consensus 52 vviI~GeTGSGKTTqvPq 69 (764)
++.|+|.+||||||..=+
T Consensus 1 ii~i~G~sgsGKttla~~ 18 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKK 18 (179)
T ss_pred CEEEECCCCCCHHHHHHH
Confidence 578999999999987543
No 422
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=79.10 E-value=0.97 Score=44.11 Aligned_cols=22 Identities=45% Similarity=0.575 Sum_probs=16.4
Q ss_pred eEEEEecCCCCccccHHHHHHHh
Q 038192 52 AVIICGETGCGKTTQVPQFLFEA 74 (764)
Q Consensus 52 vviI~GeTGSGKTTqvPq~Lle~ 74 (764)
++.|+|++|||||| |-+.|.|+
T Consensus 2 ~ItIsG~pGsG~TT-va~~lAe~ 23 (179)
T COG1102 2 VITISGLPGSGKTT-VARELAEH 23 (179)
T ss_pred EEEeccCCCCChhH-HHHHHHHH
Confidence 57899999999997 44455554
No 423
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=79.10 E-value=0.84 Score=48.22 Aligned_cols=22 Identities=32% Similarity=0.516 Sum_probs=18.7
Q ss_pred HHcCCeEEEEecCCCCccccHH
Q 038192 47 VNDNSAVIICGETGCGKTTQVP 68 (764)
Q Consensus 47 l~~~~vviI~GeTGSGKTTqvP 68 (764)
+..++++.|.|+.||||||.+=
T Consensus 25 i~~Ge~~~i~G~nGsGKSTLl~ 46 (258)
T PRK13548 25 LRPGEVVAILGPNGAGKSTLLR 46 (258)
T ss_pred EcCCCEEEEECCCCCCHHHHHH
Confidence 4568899999999999998653
No 424
>PRK00131 aroK shikimate kinase; Reviewed
Probab=78.96 E-value=0.82 Score=44.53 Aligned_cols=19 Identities=26% Similarity=0.469 Sum_probs=15.8
Q ss_pred cCCeEEEEecCCCCccccH
Q 038192 49 DNSAVIICGETGCGKTTQV 67 (764)
Q Consensus 49 ~~~vviI~GeTGSGKTTqv 67 (764)
+...++++|.+||||||.-
T Consensus 3 ~~~~i~l~G~~GsGKstla 21 (175)
T PRK00131 3 KGPNIVLIGFMGAGKSTIG 21 (175)
T ss_pred CCCeEEEEcCCCCCHHHHH
Confidence 4567899999999999753
No 425
>PLN02200 adenylate kinase family protein
Probab=78.95 E-value=0.9 Score=47.44 Aligned_cols=20 Identities=30% Similarity=0.459 Sum_probs=16.6
Q ss_pred CeEEEEecCCCCccccHHHH
Q 038192 51 SAVIICGETGCGKTTQVPQF 70 (764)
Q Consensus 51 ~vviI~GeTGSGKTTqvPq~ 70 (764)
.+++|.|.+||||||+--.+
T Consensus 44 ~ii~I~G~PGSGKsT~a~~L 63 (234)
T PLN02200 44 FITFVLGGPGSGKGTQCEKI 63 (234)
T ss_pred EEEEEECCCCCCHHHHHHHH
Confidence 46789999999999986554
No 426
>PRK09183 transposase/IS protein; Provisional
Probab=78.86 E-value=1.1 Score=47.65 Aligned_cols=24 Identities=25% Similarity=0.540 Sum_probs=19.4
Q ss_pred HHcCCeEEEEecCCCCccccHHHH
Q 038192 47 VNDNSAVIICGETGCGKTTQVPQF 70 (764)
Q Consensus 47 l~~~~vviI~GeTGSGKTTqvPq~ 70 (764)
+..+..+++.|++|||||+..--+
T Consensus 99 i~~~~~v~l~Gp~GtGKThLa~al 122 (259)
T PRK09183 99 IERNENIVLLGPSGVGKTHLAIAL 122 (259)
T ss_pred hhcCCeEEEEeCCCCCHHHHHHHH
Confidence 566788999999999999765544
No 427
>PRK06217 hypothetical protein; Validated
Probab=78.79 E-value=0.85 Score=45.46 Aligned_cols=17 Identities=35% Similarity=0.513 Sum_probs=14.4
Q ss_pred EEEEecCCCCccccHHH
Q 038192 53 VIICGETGCGKTTQVPQ 69 (764)
Q Consensus 53 viI~GeTGSGKTTqvPq 69 (764)
|+|.|.+||||||+--+
T Consensus 4 I~i~G~~GsGKSTla~~ 20 (183)
T PRK06217 4 IHITGASGSGTTTLGAA 20 (183)
T ss_pred EEEECCCCCCHHHHHHH
Confidence 78899999999986544
No 428
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=78.78 E-value=0.75 Score=44.70 Aligned_cols=16 Identities=31% Similarity=0.615 Sum_probs=13.0
Q ss_pred EEEEecCCCCccccHH
Q 038192 53 VIICGETGCGKTTQVP 68 (764)
Q Consensus 53 viI~GeTGSGKTTqvP 68 (764)
++++|++||||||..=
T Consensus 1 i~l~G~~GsGKSTla~ 16 (163)
T TIGR01313 1 FVLMGVAGSGKSTIAS 16 (163)
T ss_pred CEEECCCCCCHHHHHH
Confidence 4688999999998643
No 429
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=78.78 E-value=1.8 Score=44.59 Aligned_cols=28 Identities=32% Similarity=0.417 Sum_probs=24.0
Q ss_pred HcCCeEEEEecCCCCccccHHHHHHHhc
Q 038192 48 NDNSAVIICGETGCGKTTQVPQFLFEAG 75 (764)
Q Consensus 48 ~~~~vviI~GeTGSGKTTqvPq~Lle~~ 75 (764)
..+.++.|.|++|||||+..-|++.+..
T Consensus 21 ~~g~i~~i~G~~GsGKT~l~~~la~~~~ 48 (225)
T PRK09361 21 ERGTITQIYGPPGSGKTNICLQLAVEAA 48 (225)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3478999999999999999999887654
No 430
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=78.78 E-value=0.86 Score=47.18 Aligned_cols=22 Identities=36% Similarity=0.560 Sum_probs=19.0
Q ss_pred HHcCCeEEEEecCCCCccccHH
Q 038192 47 VNDNSAVIICGETGCGKTTQVP 68 (764)
Q Consensus 47 l~~~~vviI~GeTGSGKTTqvP 68 (764)
+..++++.|.|+.||||||.+=
T Consensus 22 i~~Ge~~~l~G~nGsGKSTLl~ 43 (232)
T PRK10771 22 VERGERVAILGPSGAGKSTLLN 43 (232)
T ss_pred EcCCCEEEEECCCCCCHHHHHH
Confidence 5678999999999999998654
No 431
>PRK14532 adenylate kinase; Provisional
Probab=78.76 E-value=0.87 Score=45.41 Aligned_cols=17 Identities=35% Similarity=0.587 Sum_probs=14.4
Q ss_pred EEEEecCCCCccccHHH
Q 038192 53 VIICGETGCGKTTQVPQ 69 (764)
Q Consensus 53 viI~GeTGSGKTTqvPq 69 (764)
+++.|.+||||||+--.
T Consensus 3 i~~~G~pGsGKsT~a~~ 19 (188)
T PRK14532 3 LILFGPPAAGKGTQAKR 19 (188)
T ss_pred EEEECCCCCCHHHHHHH
Confidence 68899999999998544
No 432
>cd01383 MYSc_type_VIII Myosin motor domain, plant-specific type VIII myosins, a subgroup which has been associated with endocytosis, cytokinesis, cell-to-cell coupling and gating at plasmodesmata. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates f
Probab=78.73 E-value=2.1 Score=51.64 Aligned_cols=37 Identities=30% Similarity=0.475 Sum_probs=26.0
Q ss_pred hhhHHHHHHHHH---cCCeEEEEecCCCCcccc---HHHHHHH
Q 038192 37 VMMEQEIMEAVN---DNSAVIICGETGCGKTTQ---VPQFLFE 73 (764)
Q Consensus 37 ~~~~~~Il~~l~---~~~vviI~GeTGSGKTTq---vPq~Lle 73 (764)
|..-+.....+. .+|.+||+||+|||||+. |-+||..
T Consensus 76 faiA~~Ay~~m~~~~~~QsIiisGESGaGKTe~~K~i~~yLa~ 118 (677)
T cd01383 76 YAIADTAYNEMMRDEVNQSIIISGESGAGKTETAKIAMQYLAS 118 (677)
T ss_pred HHHHHHHHHHHHHcCCCceEEEecCCCCCcchHHHHHHHHHHh
Confidence 344444455543 479999999999999975 6666654
No 433
>TIGR01073 pcrA ATP-dependent DNA helicase PcrA. Designed to identify pcrA members of the uvrD/rep subfamily.
Probab=78.71 E-value=2.6 Score=51.43 Aligned_cols=63 Identities=21% Similarity=0.206 Sum_probs=42.6
Q ss_pred HHHHHHHHHcCCeEEEEecCCCCccccHHHH---HHHhccCCCCCCCCCceEEEecccHHHHHHHHHHHHHHhC
Q 038192 40 EQEIMEAVNDNSAVIICGETGCGKTTQVPQF---LFEAGFGSNRCSSRSGRIGVTQPRRVAVLATAKRVAFELG 110 (764)
Q Consensus 40 ~~~Il~~l~~~~vviI~GeTGSGKTTqvPq~---Lle~~~~~~~~~~~~~~Ii~tQPRRiaAisvA~RVa~E~g 110 (764)
|.+++... .+. ++|.|..|||||+.+-.- |++..-. .+.+|++.--++-||..+.+|+.+..|
T Consensus 9 Q~~av~~~-~g~-~lV~AgaGSGKT~~l~~ria~Li~~~~i------~P~~IL~lTFT~kAA~em~~Rl~~~~~ 74 (726)
T TIGR01073 9 QREAVKTT-EGP-LLIMAGAGSGKTRVLTHRIAHLIAEKNV------APWNILAITFTNKAAREMKERVEKLLG 74 (726)
T ss_pred HHHHHhCC-CCC-EEEEeCCCCCHHHHHHHHHHHHHHcCCC------CHHHeeeeeccHHHHHHHHHHHHHHhc
Confidence 44455543 234 677788999999876553 4432111 235788888889999999999987654
No 434
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=78.67 E-value=0.88 Score=47.69 Aligned_cols=23 Identities=26% Similarity=0.432 Sum_probs=19.3
Q ss_pred HHcCCeEEEEecCCCCccccHHH
Q 038192 47 VNDNSAVIICGETGCGKTTQVPQ 69 (764)
Q Consensus 47 l~~~~vviI~GeTGSGKTTqvPq 69 (764)
+..++++.|.|++||||||.+=.
T Consensus 28 i~~Ge~~~i~G~nGsGKSTLl~~ 50 (252)
T PRK14239 28 FYPNEITALIGPSGSGKSTLLRS 50 (252)
T ss_pred EcCCcEEEEECCCCCCHHHHHHH
Confidence 45688999999999999997644
No 435
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=78.56 E-value=0.86 Score=48.37 Aligned_cols=22 Identities=27% Similarity=0.498 Sum_probs=18.9
Q ss_pred HHcCCeEEEEecCCCCccccHH
Q 038192 47 VNDNSAVIICGETGCGKTTQVP 68 (764)
Q Consensus 47 l~~~~vviI~GeTGSGKTTqvP 68 (764)
+..++++.|.|++||||||.+=
T Consensus 43 i~~Ge~~~I~G~nGsGKSTLl~ 64 (267)
T PRK14237 43 FEKNKITALIGPSGSGKSTYLR 64 (267)
T ss_pred EcCCCEEEEECCCCCCHHHHHH
Confidence 4568899999999999999664
No 436
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=78.51 E-value=1.9 Score=42.88 Aligned_cols=23 Identities=22% Similarity=0.567 Sum_probs=18.5
Q ss_pred CCeEEEEecCCCCccccHHHHHH
Q 038192 50 NSAVIICGETGCGKTTQVPQFLF 72 (764)
Q Consensus 50 ~~vviI~GeTGSGKTTqvPq~Ll 72 (764)
.+++|++|++||||||..=..+-
T Consensus 2 ~r~ivl~Gpsg~GK~~l~~~L~~ 24 (183)
T PF00625_consen 2 RRPIVLVGPSGSGKSTLAKRLIQ 24 (183)
T ss_dssp SSEEEEESSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 57899999999999987655443
No 437
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=78.50 E-value=1.1 Score=44.24 Aligned_cols=19 Identities=37% Similarity=0.688 Sum_probs=15.7
Q ss_pred EEEEecCCCCccccHHHHH
Q 038192 53 VIICGETGCGKTTQVPQFL 71 (764)
Q Consensus 53 viI~GeTGSGKTTqvPq~L 71 (764)
++|+|+.|+||||.+-..+
T Consensus 2 i~iTG~pG~GKTTll~k~i 20 (168)
T PF03266_consen 2 IFITGPPGVGKTTLLKKVI 20 (168)
T ss_dssp EEEES-TTSSHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHH
Confidence 7899999999999986655
No 438
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=78.45 E-value=0.88 Score=46.19 Aligned_cols=23 Identities=35% Similarity=0.524 Sum_probs=19.3
Q ss_pred HHcCCeEEEEecCCCCccccHHH
Q 038192 47 VNDNSAVIICGETGCGKTTQVPQ 69 (764)
Q Consensus 47 l~~~~vviI~GeTGSGKTTqvPq 69 (764)
+..++++.|.|+.||||||.+=-
T Consensus 31 i~~G~~~~i~G~nGsGKSTLl~~ 53 (207)
T cd03369 31 VKAGEKIGIVGRTGAGKSTLILA 53 (207)
T ss_pred ECCCCEEEEECCCCCCHHHHHHH
Confidence 35688999999999999987653
No 439
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=78.42 E-value=0.87 Score=48.45 Aligned_cols=22 Identities=36% Similarity=0.570 Sum_probs=19.0
Q ss_pred HHcCCeEEEEecCCCCccccHH
Q 038192 47 VNDNSAVIICGETGCGKTTQVP 68 (764)
Q Consensus 47 l~~~~vviI~GeTGSGKTTqvP 68 (764)
+..++++.|.|+.||||||.+=
T Consensus 32 i~~Ge~~~l~G~nGsGKSTLl~ 53 (271)
T PRK13632 32 INEGEYVAILGHNGSGKSTISK 53 (271)
T ss_pred EcCCCEEEEECCCCCCHHHHHH
Confidence 4578899999999999999763
No 440
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=78.41 E-value=3.7 Score=49.95 Aligned_cols=34 Identities=15% Similarity=0.348 Sum_probs=27.1
Q ss_pred HHHHHHHHcCCeEEEEecCCCCccccHHHHHHHh
Q 038192 41 QEIMEAVNDNSAVIICGETGCGKTTQVPQFLFEA 74 (764)
Q Consensus 41 ~~Il~~l~~~~vviI~GeTGSGKTTqvPq~Lle~ 74 (764)
+.+.+++.++...++.+|||+|||..+--..|..
T Consensus 20 ~~v~~~l~~~~~~llEsPTGtGKTlslL~~aL~~ 53 (705)
T TIGR00604 20 RDLKRSLDRGDEAILEMPSGTGKTISLLSLILAY 53 (705)
T ss_pred HHHHHHhccCCceEEeCCCCCCccHHHHHHHHHH
Confidence 4577888899999999999999997655555543
No 441
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=78.37 E-value=0.91 Score=47.66 Aligned_cols=23 Identities=39% Similarity=0.713 Sum_probs=19.3
Q ss_pred HHcCCeEEEEecCCCCccccHHH
Q 038192 47 VNDNSAVIICGETGCGKTTQVPQ 69 (764)
Q Consensus 47 l~~~~vviI~GeTGSGKTTqvPq 69 (764)
|..++++.|.|+.||||||.+=.
T Consensus 27 i~~Ge~~~i~G~nGsGKSTLl~~ 49 (252)
T PRK14256 27 FPENSVTAIIGPSGCGKSTVLRS 49 (252)
T ss_pred EcCCCEEEEECCCCCCHHHHHHH
Confidence 45789999999999999986543
No 442
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=78.37 E-value=0.86 Score=53.34 Aligned_cols=23 Identities=30% Similarity=0.430 Sum_probs=19.4
Q ss_pred HHcCCeEEEEecCCCCccccHHH
Q 038192 47 VNDNSAVIICGETGCGKTTQVPQ 69 (764)
Q Consensus 47 l~~~~vviI~GeTGSGKTTqvPq 69 (764)
++.++.+.|.|++||||||.+=.
T Consensus 358 i~~G~~vaIvG~SGsGKSTLl~l 380 (529)
T TIGR02868 358 LPPGERVAILGPSGSGKSTLLML 380 (529)
T ss_pred EcCCCEEEEECCCCCCHHHHHHH
Confidence 46688999999999999997643
No 443
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=78.36 E-value=0.91 Score=46.67 Aligned_cols=22 Identities=36% Similarity=0.484 Sum_probs=19.0
Q ss_pred HHcCCeEEEEecCCCCccccHH
Q 038192 47 VNDNSAVIICGETGCGKTTQVP 68 (764)
Q Consensus 47 l~~~~vviI~GeTGSGKTTqvP 68 (764)
+..++++.|.|+.||||||.+=
T Consensus 23 i~~Ge~~~i~G~nGsGKSTLl~ 44 (223)
T TIGR03740 23 VPKNSVYGLLGPNGAGKSTLLK 44 (223)
T ss_pred EcCCcEEEEECCCCCCHHHHHH
Confidence 4578899999999999999764
No 444
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=78.30 E-value=0.91 Score=48.28 Aligned_cols=23 Identities=30% Similarity=0.511 Sum_probs=19.3
Q ss_pred HHcCCeEEEEecCCCCccccHHH
Q 038192 47 VNDNSAVIICGETGCGKTTQVPQ 69 (764)
Q Consensus 47 l~~~~vviI~GeTGSGKTTqvPq 69 (764)
+..++++.|.|+.||||||.+=-
T Consensus 47 i~~Ge~~~l~G~nGsGKSTLl~~ 69 (269)
T cd03294 47 VREGEIFVIMGLSGSGKSTLLRC 69 (269)
T ss_pred EcCCCEEEEECCCCCCHHHHHHH
Confidence 45678999999999999987653
No 445
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=78.30 E-value=0.92 Score=47.34 Aligned_cols=22 Identities=27% Similarity=0.508 Sum_probs=18.7
Q ss_pred HHcCCeEEEEecCCCCccccHH
Q 038192 47 VNDNSAVIICGETGCGKTTQVP 68 (764)
Q Consensus 47 l~~~~vviI~GeTGSGKTTqvP 68 (764)
+..++++.|.|+.||||||.+=
T Consensus 26 i~~Ge~~~i~G~nGsGKSTLl~ 47 (241)
T PRK14250 26 FEGGAIYTIVGPSGAGKSTLIK 47 (241)
T ss_pred EcCCCEEEEECCCCCCHHHHHH
Confidence 3568899999999999998654
No 446
>PF10412 TrwB_AAD_bind: Type IV secretion-system coupling protein DNA-binding domain; InterPro: IPR019476 The plasmid conjugative coupling protein TraD (also known as TrwB) is a basic integral inner-membrane nucleoside-triphosphate-binding protein. It is the structural prototype for the type IV secretion system coupling proteins, a family of proteins essential for macromolecular transport between cells []. This protein forms hexamers from six structurally very similar protomers []. This hexamer contains a central channel running from the cytosolic pole (formed by the all-alpha domains) to the membrane pole ending at the transmembrane pore shaped by 12 transmembrane helices, rendering an overall mushroom-like structure. The TrwB all-alpha domain appears to be the DNA-binding domain of the structure. ; PDB: 1E9S_D 1E9R_F 1GKI_B 1GL7_G 1GL6_A.
Probab=78.27 E-value=1.5 Score=49.35 Aligned_cols=41 Identities=27% Similarity=0.414 Sum_probs=26.5
Q ss_pred cCCeEEEEecCCCCccccHHHHHHHhccCCCCCCCCCceEEEecccHH
Q 038192 49 DNSAVIICGETGCGKTTQVPQFLFEAGFGSNRCSSRSGRIGVTQPRRV 96 (764)
Q Consensus 49 ~~~vviI~GeTGSGKTTqvPq~Lle~~~~~~~~~~~~~~Ii~tQPRRi 96 (764)
.++.++|.|.||||||+.+-++|-. ....+ -+.+|.-|...
T Consensus 14 e~~~~li~G~~GsGKT~~i~~ll~~-~~~~g------~~~iI~D~kg~ 54 (386)
T PF10412_consen 14 ENRHILIIGATGSGKTQAIRHLLDQ-IRARG------DRAIIYDPKGE 54 (386)
T ss_dssp GGG-EEEEE-TTSSHHHHHHHHHHH-HHHTT-------EEEEEEETTH
T ss_pred hhCcEEEECCCCCCHHHHHHHHHHH-HHHcC------CEEEEEECCch
Confidence 3556899999999999877665443 33222 36788888754
No 447
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=78.26 E-value=0.9 Score=47.54 Aligned_cols=22 Identities=32% Similarity=0.715 Sum_probs=18.7
Q ss_pred HHcCCeEEEEecCCCCccccHH
Q 038192 47 VNDNSAVIICGETGCGKTTQVP 68 (764)
Q Consensus 47 l~~~~vviI~GeTGSGKTTqvP 68 (764)
+..++++.|.|++||||||.+=
T Consensus 25 i~~Ge~~~i~G~nGsGKSTLl~ 46 (246)
T PRK14269 25 IEQNKITALIGASGCGKSTFLR 46 (246)
T ss_pred EcCCCEEEEECCCCCCHHHHHH
Confidence 3567899999999999999664
No 448
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=78.26 E-value=3.2 Score=49.98 Aligned_cols=50 Identities=16% Similarity=0.198 Sum_probs=34.2
Q ss_pred HHHHHHHcCCeEEEEecCCCCccccHHHHHHHhccCCCCCCCCCceEEEecccHHH
Q 038192 42 EIMEAVNDNSAVIICGETGCGKTTQVPQFLFEAGFGSNRCSSRSGRIGVTQPRRVA 97 (764)
Q Consensus 42 ~Il~~l~~~~vviI~GeTGSGKTTqvPq~Lle~~~~~~~~~~~~~~Ii~tQPRRia 97 (764)
.|-+++.++..++|.|+||+|||-..--+.+..+...+ .+++++-+++..
T Consensus 26 ~v~~a~~~~~~~~iEapTGtGKTl~yL~~al~~~~~~~------~~viist~t~~l 75 (654)
T COG1199 26 AVAEALKGGEGLLIEAPTGTGKTLAYLLPALAYAREEG------KKVIISTRTKAL 75 (654)
T ss_pred HHHHHHcCCCcEEEECCCCccHHHHHHHHHHHHHHHcC------CcEEEECCCHHH
Confidence 35577788888999999999999865555554443222 356666666643
No 449
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=78.24 E-value=1.1 Score=44.62 Aligned_cols=22 Identities=23% Similarity=0.407 Sum_probs=17.9
Q ss_pred cCCeEEEEecCCCCccccHHHH
Q 038192 49 DNSAVIICGETGCGKTTQVPQF 70 (764)
Q Consensus 49 ~~~vviI~GeTGSGKTTqvPq~ 70 (764)
.+.+++|.|.+||||||..-..
T Consensus 2 ~ge~i~l~G~sGsGKSTl~~~l 23 (176)
T PRK09825 2 AGESYILMGVSGSGKSLIGSKI 23 (176)
T ss_pred CCcEEEEECCCCCCHHHHHHHH
Confidence 3678999999999999976543
No 450
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=78.24 E-value=0.96 Score=46.95 Aligned_cols=23 Identities=35% Similarity=0.709 Sum_probs=19.5
Q ss_pred HHcCCeEEEEecCCCCccccHHH
Q 038192 47 VNDNSAVIICGETGCGKTTQVPQ 69 (764)
Q Consensus 47 l~~~~vviI~GeTGSGKTTqvPq 69 (764)
+..++++.|.|+.||||||.+=.
T Consensus 26 i~~Ge~~~l~G~nGsGKSTLl~~ 48 (238)
T cd03249 26 IPPGKTVALVGSSGCGKSTVVSL 48 (238)
T ss_pred ecCCCEEEEEeCCCCCHHHHHHH
Confidence 45789999999999999997653
No 451
>PF05127 Helicase_RecD: Helicase; InterPro: IPR007807 This domain is about 350 amino acid residues long and appears to have a P-loop motif, suggesting this is an ATPase. This domain is often N-terminal to a GCN5-related N-acetyltransferase domain IPR000182 from INTERPRO and C-terminal to IPR013562 from INTERPRO.; PDB: 2ZPA_B.
Probab=78.22 E-value=0.61 Score=46.48 Aligned_cols=110 Identities=18% Similarity=0.177 Sum_probs=48.0
Q ss_pred EEEecCCCCccccHHHHHHHhccCCCCCCCCCceEEEecccHHHHHHHHHHHHHHhCCCCCCEeeEEeccCcc-------
Q 038192 54 IICGETGCGKTTQVPQFLFEAGFGSNRCSSRSGRIGVTQPRRVAVLATAKRVAFELGLHLGKEVGFQVRHDKK------- 126 (764)
Q Consensus 54 iI~GeTGSGKTTqvPq~Lle~~~~~~~~~~~~~~Ii~tQPRRiaAisvA~RVa~E~g~~lG~~VGY~ir~e~~------- 126 (764)
||+|+-|.|||+.+-..+-.... .+ ..+|+||-|+..++.++.+.+...+. ..||..+...+
T Consensus 1 VltA~RGRGKSa~lGl~~a~l~~-~~-----~~~I~vtAP~~~~~~~lf~~~~~~l~-----~~~~~~~~~~~~~~~~~~ 69 (177)
T PF05127_consen 1 VLTADRGRGKSAALGLAAAALIQ-KG-----KIRILVTAPSPENVQTLFEFAEKGLK-----ALGYKEEKKKRIGQIIKL 69 (177)
T ss_dssp -EEE-TTSSHHHHHHHCCCCSSS-----------EEEE-SS--S-HHHHHCC----------------------------
T ss_pred CccCCCCCCHHHHHHHHHHHHHH-hc-----CceEEEecCCHHHHHHHHHHHHhhcc-----cccccccccccccccccc
Confidence 68999999999988765432211 11 15899999999998888775544332 23443311111
Q ss_pred cCCCceEEEEchHHHHHHHHH----HHHHHHH---HHhhccccCCccCCCCceEEEeecccc
Q 038192 127 IGDSCSIKFMTDGILLRELKA----LYEKQQQ---LLRSGQCIEPKDRVFPLKLILMSATLR 181 (764)
Q Consensus 127 ~s~~t~I~f~T~GiLLr~l~~----i~de~~~---~l~~~~~~~~~~~~~~lKlILMSATl~ 181 (764)
...+..|.|..|.-++..-.. ++||+-- -++..++ ..-+.|+||-|+.
T Consensus 70 ~~~~~~i~f~~Pd~l~~~~~~~DlliVDEAAaIp~p~L~~ll-------~~~~~vv~stTi~ 124 (177)
T PF05127_consen 70 RFNKQRIEFVAPDELLAEKPQADLLIVDEAAAIPLPLLKQLL-------RRFPRVVFSTTIH 124 (177)
T ss_dssp ---CCC--B--HHHHCCT----SCEEECTGGGS-HHHHHHHH-------CCSSEEEEEEEBS
T ss_pred ccccceEEEECCHHHHhCcCCCCEEEEechhcCCHHHHHHHH-------hhCCEEEEEeecc
Confidence 123567899998877765421 3455421 1111111 2345678899984
No 452
>PRK00091 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed
Probab=78.22 E-value=0.97 Score=49.14 Aligned_cols=19 Identities=32% Similarity=0.483 Sum_probs=15.7
Q ss_pred CCeEEEEecCCCCccccHH
Q 038192 50 NSAVIICGETGCGKTTQVP 68 (764)
Q Consensus 50 ~~vviI~GeTGSGKTTqvP 68 (764)
..+++|+|+|||||||..-
T Consensus 4 ~~~i~i~GptgsGKt~la~ 22 (307)
T PRK00091 4 PKVIVIVGPTASGKTALAI 22 (307)
T ss_pred ceEEEEECCCCcCHHHHHH
Confidence 3589999999999996544
No 453
>cd01377 MYSc_type_II Myosin motor domain, type II myosins. Myosin II mediates cortical contraction in cell motility, and is the motor in smooth and skeletal muscle. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydro
Probab=78.22 E-value=2 Score=51.92 Aligned_cols=39 Identities=31% Similarity=0.595 Sum_probs=27.8
Q ss_pred chhhHHHHHHHH---HcCCeEEEEecCCCCcccc---HHHHHHHh
Q 038192 36 IVMMEQEIMEAV---NDNSAVIICGETGCGKTTQ---VPQFLFEA 74 (764)
Q Consensus 36 i~~~~~~Il~~l---~~~~vviI~GeTGSGKTTq---vPq~Lle~ 74 (764)
||..-+.....+ ..+|.+||+||+|||||+. |-+||..-
T Consensus 74 iyaiA~~Ay~~m~~~~~~QsIiiSGESGAGKTes~K~il~yLa~~ 118 (693)
T cd01377 74 IFAIADNAYRSMLQDRENQSILITGESGAGKTENTKKVIQYLASV 118 (693)
T ss_pred HHHHHHHHHHHHHhcCCCceEEEEcCCCCCchHHHHHHHHHHHhh
Confidence 444445555555 3579999999999999974 66777654
No 454
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=78.21 E-value=0.88 Score=46.92 Aligned_cols=23 Identities=35% Similarity=0.550 Sum_probs=19.2
Q ss_pred HHcCCeEEEEecCCCCccccHHH
Q 038192 47 VNDNSAVIICGETGCGKTTQVPQ 69 (764)
Q Consensus 47 l~~~~vviI~GeTGSGKTTqvPq 69 (764)
+..++++.|.|+.||||||.+=.
T Consensus 30 i~~Ge~~~l~G~nGsGKSTLlk~ 52 (226)
T cd03234 30 VESGQVMAILGSSGSGKTTLLDA 52 (226)
T ss_pred EcCCeEEEEECCCCCCHHHHHHH
Confidence 45678999999999999986643
No 455
>PRK03839 putative kinase; Provisional
Probab=78.20 E-value=0.96 Score=44.81 Aligned_cols=18 Identities=39% Similarity=0.525 Sum_probs=15.1
Q ss_pred eEEEEecCCCCccccHHH
Q 038192 52 AVIICGETGCGKTTQVPQ 69 (764)
Q Consensus 52 vviI~GeTGSGKTTqvPq 69 (764)
.++|.|.+||||||+--+
T Consensus 2 ~I~l~G~pGsGKsT~~~~ 19 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKL 19 (180)
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 478899999999997554
No 456
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=78.19 E-value=0.93 Score=47.49 Aligned_cols=22 Identities=32% Similarity=0.750 Sum_probs=18.8
Q ss_pred HHcCCeEEEEecCCCCccccHH
Q 038192 47 VNDNSAVIICGETGCGKTTQVP 68 (764)
Q Consensus 47 l~~~~vviI~GeTGSGKTTqvP 68 (764)
+..+.++.|.|+.||||||.+=
T Consensus 26 i~~Ge~~~i~G~nGsGKSTLl~ 47 (250)
T PRK14240 26 IEENQVTALIGPSGCGKSTFLR 47 (250)
T ss_pred EcCCCEEEEECCCCCCHHHHHH
Confidence 4578899999999999999654
No 457
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=78.10 E-value=1 Score=44.74 Aligned_cols=19 Identities=32% Similarity=0.511 Sum_probs=16.0
Q ss_pred eEEEEecCCCCccccHHHH
Q 038192 52 AVIICGETGCGKTTQVPQF 70 (764)
Q Consensus 52 vviI~GeTGSGKTTqvPq~ 70 (764)
+++|.|..|||||||.-..
T Consensus 2 ~I~ieG~~GsGKtT~~~~L 20 (200)
T cd01672 2 FIVFEGIDGAGKTTLIELL 20 (200)
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 5789999999999986543
No 458
>cd01380 MYSc_type_V Myosin motor domain, type V myosins. Myosins V transport a variety of intracellular cargo processively along actin filaments, such as membraneous organelles and mRNA. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an act
Probab=78.08 E-value=2.2 Score=51.68 Aligned_cols=43 Identities=26% Similarity=0.564 Sum_probs=31.1
Q ss_pred cCCC--chhhHHHHHHHHH---cCCeEEEEecCCCCcccc---HHHHHHHh
Q 038192 32 KDLP--IVMMEQEIMEAVN---DNSAVIICGETGCGKTTQ---VPQFLFEA 74 (764)
Q Consensus 32 ~~LP--i~~~~~~Il~~l~---~~~vviI~GeTGSGKTTq---vPq~Lle~ 74 (764)
..+| ||..-+.....+. .+|.+||+||+|+|||+. |-+||...
T Consensus 63 ~~~~PHifaiA~~Ay~~m~~~~~~QsIiiSGESGaGKTes~K~i~~yLa~~ 113 (691)
T cd01380 63 GELDPHIFAIAEEAYKQMTRDEKNQSIIVSGESGAGKTVSAKYIMRYFASV 113 (691)
T ss_pred CCCCCCHHHHHHHHHHHHHhcCCCceEEEEcCCCCCchHHHHHHHHHHHHh
Confidence 4466 5555566555554 479999999999999974 66777654
No 459
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=78.07 E-value=0.92 Score=47.59 Aligned_cols=22 Identities=27% Similarity=0.602 Sum_probs=18.9
Q ss_pred HHcCCeEEEEecCCCCccccHH
Q 038192 47 VNDNSAVIICGETGCGKTTQVP 68 (764)
Q Consensus 47 l~~~~vviI~GeTGSGKTTqvP 68 (764)
+..++++.|.|++||||||.+=
T Consensus 28 i~~Ge~~~I~G~nGsGKSTLl~ 49 (251)
T PRK14244 28 IYKREVTAFIGPSGCGKSTFLR 49 (251)
T ss_pred EcCCCEEEEECCCCCCHHHHHH
Confidence 4568899999999999998654
No 460
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=77.95 E-value=0.94 Score=48.13 Aligned_cols=21 Identities=29% Similarity=0.447 Sum_probs=18.7
Q ss_pred HHcCCeEEEEecCCCCccccH
Q 038192 47 VNDNSAVIICGETGCGKTTQV 67 (764)
Q Consensus 47 l~~~~vviI~GeTGSGKTTqv 67 (764)
+..++++.|.|+.||||||.+
T Consensus 32 i~~Ge~~~I~G~nGsGKSTLl 52 (269)
T PRK13648 32 IPKGQWTSIVGHNGSGKSTIA 52 (269)
T ss_pred EcCCCEEEEECCCCCCHHHHH
Confidence 467899999999999999976
No 461
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=77.92 E-value=0.93 Score=43.73 Aligned_cols=18 Identities=28% Similarity=0.494 Sum_probs=14.9
Q ss_pred eEEEEecCCCCccccHHH
Q 038192 52 AVIICGETGCGKTTQVPQ 69 (764)
Q Consensus 52 vviI~GeTGSGKTTqvPq 69 (764)
|++|+|.+||||||..=.
T Consensus 1 ~i~i~G~~GsGKSTla~~ 18 (149)
T cd02027 1 VIWLTGLSGSGKSTIARA 18 (149)
T ss_pred CEEEEcCCCCCHHHHHHH
Confidence 578999999999986443
No 462
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=77.91 E-value=0.93 Score=45.67 Aligned_cols=23 Identities=26% Similarity=0.429 Sum_probs=19.3
Q ss_pred HHcCCeEEEEecCCCCccccHHH
Q 038192 47 VNDNSAVIICGETGCGKTTQVPQ 69 (764)
Q Consensus 47 l~~~~vviI~GeTGSGKTTqvPq 69 (764)
+..++++.|.|+.||||||.+--
T Consensus 32 i~~Ge~~~l~G~nGsGKStLl~~ 54 (194)
T cd03213 32 AKPGELTAIMGPSGAGKSTLLNA 54 (194)
T ss_pred EcCCcEEEEECCCCCCHHHHHHH
Confidence 46788999999999999986643
No 463
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=77.90 E-value=0.95 Score=48.15 Aligned_cols=23 Identities=26% Similarity=0.616 Sum_probs=19.3
Q ss_pred HHcCCeEEEEecCCCCccccHHH
Q 038192 47 VNDNSAVIICGETGCGKTTQVPQ 69 (764)
Q Consensus 47 l~~~~vviI~GeTGSGKTTqvPq 69 (764)
|..+.++.|.|+.||||||.+=.
T Consensus 36 i~~Ge~~~l~G~nGsGKSTLl~~ 58 (269)
T PRK14259 36 IPRGKVTALIGPSGCGKSTVLRS 58 (269)
T ss_pred EcCCCEEEEECCCCCCHHHHHHH
Confidence 46788999999999999996543
No 464
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=77.86 E-value=0.93 Score=48.21 Aligned_cols=22 Identities=27% Similarity=0.483 Sum_probs=18.7
Q ss_pred HHcCCeEEEEecCCCCccccHH
Q 038192 47 VNDNSAVIICGETGCGKTTQVP 68 (764)
Q Consensus 47 l~~~~vviI~GeTGSGKTTqvP 68 (764)
+..++++.|.|+.||||||.+=
T Consensus 24 i~~Ge~~~i~G~nGsGKSTLl~ 45 (271)
T PRK13638 24 FSLSPVTGLVGANGCGKSTLFM 45 (271)
T ss_pred EcCCCEEEEECCCCCCHHHHHH
Confidence 4568899999999999998654
No 465
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=77.78 E-value=0.94 Score=47.22 Aligned_cols=22 Identities=27% Similarity=0.581 Sum_probs=18.8
Q ss_pred HHcCCeEEEEecCCCCccccHH
Q 038192 47 VNDNSAVIICGETGCGKTTQVP 68 (764)
Q Consensus 47 l~~~~vviI~GeTGSGKTTqvP 68 (764)
+..++++.|.|+.||||||.+=
T Consensus 24 i~~Ge~~~i~G~nGsGKSTLl~ 45 (242)
T cd03295 24 IAKGEFLVLIGPSGSGKTTTMK 45 (242)
T ss_pred ECCCCEEEEECCCCCCHHHHHH
Confidence 4568899999999999999664
No 466
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=77.74 E-value=0.97 Score=47.03 Aligned_cols=23 Identities=30% Similarity=0.599 Sum_probs=19.2
Q ss_pred HHcCCeEEEEecCCCCccccHHH
Q 038192 47 VNDNSAVIICGETGCGKTTQVPQ 69 (764)
Q Consensus 47 l~~~~vviI~GeTGSGKTTqvPq 69 (764)
+..+.++.|.|+.||||||.+=.
T Consensus 24 i~~Ge~~~l~G~nGsGKSTLl~~ 46 (240)
T PRK09493 24 IDQGEVVVIIGPSGSGKSTLLRC 46 (240)
T ss_pred EcCCcEEEEECCCCCCHHHHHHH
Confidence 35688999999999999997643
No 467
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=77.73 E-value=0.95 Score=46.72 Aligned_cols=23 Identities=26% Similarity=0.416 Sum_probs=19.3
Q ss_pred HHcCCeEEEEecCCCCccccHHH
Q 038192 47 VNDNSAVIICGETGCGKTTQVPQ 69 (764)
Q Consensus 47 l~~~~vviI~GeTGSGKTTqvPq 69 (764)
+..++++.|.|+.||||||.+=-
T Consensus 45 i~~Ge~~~i~G~nGsGKSTLl~~ 67 (224)
T cd03220 45 VPRGERIGLIGRNGAGKSTLLRL 67 (224)
T ss_pred EcCCCEEEEECCCCCCHHHHHHH
Confidence 45688999999999999987643
No 468
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=77.72 E-value=0.98 Score=46.85 Aligned_cols=22 Identities=32% Similarity=0.510 Sum_probs=18.8
Q ss_pred HHcCCeEEEEecCCCCccccHH
Q 038192 47 VNDNSAVIICGETGCGKTTQVP 68 (764)
Q Consensus 47 l~~~~vviI~GeTGSGKTTqvP 68 (764)
+..++++.|.|+.||||||.+=
T Consensus 25 i~~Ge~~~i~G~nGsGKSTLl~ 46 (237)
T cd03252 25 IKPGEVVGIVGRSGSGKSTLTK 46 (237)
T ss_pred EcCCCEEEEECCCCCCHHHHHH
Confidence 4578899999999999998654
No 469
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=77.70 E-value=0.9 Score=48.84 Aligned_cols=23 Identities=30% Similarity=0.524 Sum_probs=19.1
Q ss_pred HHcCCeEEEEecCCCCccccHHH
Q 038192 47 VNDNSAVIICGETGCGKTTQVPQ 69 (764)
Q Consensus 47 l~~~~vviI~GeTGSGKTTqvPq 69 (764)
+..++++.|.|+.||||||.+=.
T Consensus 34 i~~Ge~~~l~G~nGsGKSTLl~~ 56 (289)
T PRK13645 34 FKKNKVTCVIGTTGSGKSTMIQL 56 (289)
T ss_pred EeCCCEEEEECCCCCCHHHHHHH
Confidence 35688999999999999996543
No 470
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=77.68 E-value=0.95 Score=47.51 Aligned_cols=22 Identities=27% Similarity=0.510 Sum_probs=18.7
Q ss_pred HHcCCeEEEEecCCCCccccHH
Q 038192 47 VNDNSAVIICGETGCGKTTQVP 68 (764)
Q Consensus 47 l~~~~vviI~GeTGSGKTTqvP 68 (764)
+..++++.|.|+.||||||.+=
T Consensus 19 i~~Gei~~l~G~nGsGKSTLl~ 40 (248)
T PRK03695 19 VRAGEILHLVGPNGAGKSTLLA 40 (248)
T ss_pred EcCCCEEEEECCCCCCHHHHHH
Confidence 4567899999999999998654
No 471
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=77.67 E-value=0.99 Score=46.22 Aligned_cols=22 Identities=27% Similarity=0.685 Sum_probs=18.7
Q ss_pred HHcCCeEEEEecCCCCccccHH
Q 038192 47 VNDNSAVIICGETGCGKTTQVP 68 (764)
Q Consensus 47 l~~~~vviI~GeTGSGKTTqvP 68 (764)
+..++++.|.|+.||||||.+=
T Consensus 24 i~~Ge~~~i~G~nGsGKSTLl~ 45 (218)
T cd03290 24 IPTGQLTMIVGQVGCGKSSLLL 45 (218)
T ss_pred EcCCCEEEEECCCCCCHHHHHH
Confidence 4568899999999999998654
No 472
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=77.65 E-value=0.96 Score=46.86 Aligned_cols=23 Identities=30% Similarity=0.495 Sum_probs=19.3
Q ss_pred HHcCCeEEEEecCCCCccccHHH
Q 038192 47 VNDNSAVIICGETGCGKTTQVPQ 69 (764)
Q Consensus 47 l~~~~vviI~GeTGSGKTTqvPq 69 (764)
+..++++.|.|+.||||||.+=.
T Consensus 24 i~~Ge~~~l~G~nGsGKSTLl~~ 46 (236)
T cd03253 24 IPAGKKVAIVGPSGSGKSTILRL 46 (236)
T ss_pred EcCCCEEEEECCCCCCHHHHHHH
Confidence 45688999999999999987643
No 473
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=77.65 E-value=0.95 Score=47.52 Aligned_cols=22 Identities=36% Similarity=0.546 Sum_probs=19.0
Q ss_pred HHcCCeEEEEecCCCCccccHH
Q 038192 47 VNDNSAVIICGETGCGKTTQVP 68 (764)
Q Consensus 47 l~~~~vviI~GeTGSGKTTqvP 68 (764)
+..++++.|.|+.||||||.+=
T Consensus 28 i~~Ge~~~l~G~nGsGKSTLl~ 49 (255)
T PRK11300 28 VREQEIVSLIGPNGAGKTTVFN 49 (255)
T ss_pred EcCCeEEEEECCCCCCHHHHHH
Confidence 4578999999999999999764
No 474
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=77.59 E-value=0.97 Score=45.76 Aligned_cols=22 Identities=32% Similarity=0.534 Sum_probs=18.8
Q ss_pred HHcCCeEEEEecCCCCccccHH
Q 038192 47 VNDNSAVIICGETGCGKTTQVP 68 (764)
Q Consensus 47 l~~~~vviI~GeTGSGKTTqvP 68 (764)
+..++++.|.|+.||||||.+=
T Consensus 28 i~~G~~~~i~G~nG~GKSTLl~ 49 (204)
T cd03250 28 VPKGELVAIVGPVGSGKSSLLS 49 (204)
T ss_pred ECCCCEEEEECCCCCCHHHHHH
Confidence 4578899999999999999654
No 475
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=77.58 E-value=0.98 Score=45.01 Aligned_cols=17 Identities=35% Similarity=0.688 Sum_probs=14.5
Q ss_pred EEEEecCCCCccccHHH
Q 038192 53 VIICGETGCGKTTQVPQ 69 (764)
Q Consensus 53 viI~GeTGSGKTTqvPq 69 (764)
++|.|.+||||||+-=+
T Consensus 2 I~i~G~pGsGKst~a~~ 18 (194)
T cd01428 2 ILLLGPPGSGKGTQAER 18 (194)
T ss_pred EEEECCCCCCHHHHHHH
Confidence 68999999999988643
No 476
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=77.55 E-value=1 Score=46.90 Aligned_cols=23 Identities=30% Similarity=0.449 Sum_probs=19.6
Q ss_pred HHcCCeEEEEecCCCCccccHHH
Q 038192 47 VNDNSAVIICGETGCGKTTQVPQ 69 (764)
Q Consensus 47 l~~~~vviI~GeTGSGKTTqvPq 69 (764)
+..++++.|.|+.||||||.+=.
T Consensus 44 i~~Ge~~~i~G~NGsGKSTLl~~ 66 (236)
T cd03267 44 IEKGEIVGFIGPNGAGKTTTLKI 66 (236)
T ss_pred EcCCCEEEEECCCCCCHHHHHHH
Confidence 45789999999999999997644
No 477
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=77.54 E-value=1.1 Score=40.76 Aligned_cols=19 Identities=32% Similarity=0.490 Sum_probs=16.1
Q ss_pred EEEEecCCCCccccHHHHH
Q 038192 53 VIICGETGCGKTTQVPQFL 71 (764)
Q Consensus 53 viI~GeTGSGKTTqvPq~L 71 (764)
|+|.|.||+||||.+=.++
T Consensus 2 V~iiG~~~~GKSTlin~l~ 20 (116)
T PF01926_consen 2 VAIIGRPNVGKSTLINALT 20 (116)
T ss_dssp EEEEESTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHh
Confidence 5788999999999887665
No 478
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=77.53 E-value=0.99 Score=48.19 Aligned_cols=22 Identities=23% Similarity=0.487 Sum_probs=19.0
Q ss_pred HHcCCeEEEEecCCCCccccHH
Q 038192 47 VNDNSAVIICGETGCGKTTQVP 68 (764)
Q Consensus 47 l~~~~vviI~GeTGSGKTTqvP 68 (764)
|..++++.|.|+.||||||.+=
T Consensus 24 i~~Ge~~~l~G~nGsGKSTLl~ 45 (272)
T PRK13547 24 IEPGRVTALLGRNGAGKSTLLK 45 (272)
T ss_pred EcCCCEEEEECCCCCCHHHHHH
Confidence 4678999999999999998664
No 479
>PRK06526 transposase; Provisional
Probab=77.51 E-value=1.1 Score=47.41 Aligned_cols=24 Identities=29% Similarity=0.436 Sum_probs=18.8
Q ss_pred HHHHcCCeEEEEecCCCCccccHH
Q 038192 45 EAVNDNSAVIICGETGCGKTTQVP 68 (764)
Q Consensus 45 ~~l~~~~vviI~GeTGSGKTTqvP 68 (764)
+.+..+..+++.|++|||||+..-
T Consensus 93 ~fi~~~~nlll~Gp~GtGKThLa~ 116 (254)
T PRK06526 93 DFVTGKENVVFLGPPGTGKTHLAI 116 (254)
T ss_pred chhhcCceEEEEeCCCCchHHHHH
Confidence 345667789999999999996543
No 480
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=77.50 E-value=0.97 Score=47.62 Aligned_cols=23 Identities=26% Similarity=0.450 Sum_probs=19.3
Q ss_pred HHcCCeEEEEecCCCCccccHHH
Q 038192 47 VNDNSAVIICGETGCGKTTQVPQ 69 (764)
Q Consensus 47 l~~~~vviI~GeTGSGKTTqvPq 69 (764)
+..++++.|.|+.||||||.+=-
T Consensus 27 i~~Ge~~~I~G~NGsGKSTLl~~ 49 (251)
T PRK09544 27 LKPGKILTLLGPNGAGKSTLVRV 49 (251)
T ss_pred EcCCcEEEEECCCCCCHHHHHHH
Confidence 45688999999999999997643
No 481
>PRK13975 thymidylate kinase; Provisional
Probab=77.49 E-value=1.1 Score=44.97 Aligned_cols=20 Identities=40% Similarity=0.531 Sum_probs=17.1
Q ss_pred CCeEEEEecCCCCccccHHH
Q 038192 50 NSAVIICGETGCGKTTQVPQ 69 (764)
Q Consensus 50 ~~vviI~GeTGSGKTTqvPq 69 (764)
+..++|.|..|||||||.-.
T Consensus 2 ~~~I~ieG~~GsGKtT~~~~ 21 (196)
T PRK13975 2 NKFIVFEGIDGSGKTTQAKL 21 (196)
T ss_pred CeEEEEECCCCCCHHHHHHH
Confidence 35789999999999998764
No 482
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=77.43 E-value=0.97 Score=48.13 Aligned_cols=22 Identities=32% Similarity=0.457 Sum_probs=19.0
Q ss_pred HHcCCeEEEEecCCCCccccHH
Q 038192 47 VNDNSAVIICGETGCGKTTQVP 68 (764)
Q Consensus 47 l~~~~vviI~GeTGSGKTTqvP 68 (764)
+..+.++.|.|+.||||||.+=
T Consensus 30 i~~Ge~~~l~G~nGsGKSTLl~ 51 (272)
T PRK15056 30 VPGGSIAALVGVNGSGKSTLFK 51 (272)
T ss_pred EcCCCEEEEECCCCCCHHHHHH
Confidence 4578899999999999999764
No 483
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=77.39 E-value=1.1 Score=56.04 Aligned_cols=26 Identities=27% Similarity=0.552 Sum_probs=21.1
Q ss_pred HHcCCeEEEEecCCCCccccHHHHHH
Q 038192 47 VNDNSAVIICGETGCGKTTQVPQFLF 72 (764)
Q Consensus 47 l~~~~vviI~GeTGSGKTTqvPq~Ll 72 (764)
+..+.+.+|+|+|||||||.+=-+.+
T Consensus 22 ~f~~gi~lI~G~nGsGKSSIldAI~~ 47 (908)
T COG0419 22 LFDSGIFLIVGPNGAGKSSILDAITF 47 (908)
T ss_pred cCCCCeEEEECCCCCcHHHHHHHHHH
Confidence 45678999999999999997655544
No 484
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=77.39 E-value=0.97 Score=47.91 Aligned_cols=22 Identities=36% Similarity=0.678 Sum_probs=18.9
Q ss_pred HHcCCeEEEEecCCCCccccHH
Q 038192 47 VNDNSAVIICGETGCGKTTQVP 68 (764)
Q Consensus 47 l~~~~vviI~GeTGSGKTTqvP 68 (764)
+..++++.|.|+.||||||.+=
T Consensus 30 i~~Ge~~~i~G~nGsGKSTLl~ 51 (265)
T PRK10253 30 IPDGHFTAIIGPNGCGKSTLLR 51 (265)
T ss_pred ECCCCEEEEECCCCCCHHHHHH
Confidence 4578899999999999999664
No 485
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=77.35 E-value=0.99 Score=47.62 Aligned_cols=22 Identities=36% Similarity=0.765 Sum_probs=19.0
Q ss_pred HHcCCeEEEEecCCCCccccHH
Q 038192 47 VNDNSAVIICGETGCGKTTQVP 68 (764)
Q Consensus 47 l~~~~vviI~GeTGSGKTTqvP 68 (764)
+..++++.|.|+.||||||.+=
T Consensus 35 i~~Ge~~~l~G~nGsGKSTLl~ 56 (259)
T PRK14274 35 IPENEVTAIIGPSGCGKSTFIK 56 (259)
T ss_pred EcCCCEEEEECCCCCCHHHHHH
Confidence 4568899999999999999764
No 486
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=77.29 E-value=1 Score=47.23 Aligned_cols=22 Identities=36% Similarity=0.721 Sum_probs=18.9
Q ss_pred HHcCCeEEEEecCCCCccccHH
Q 038192 47 VNDNSAVIICGETGCGKTTQVP 68 (764)
Q Consensus 47 l~~~~vviI~GeTGSGKTTqvP 68 (764)
+..++++.|.|+.||||||.+=
T Consensus 28 i~~Ge~~~l~G~nGsGKSTLl~ 49 (252)
T PRK14255 28 FNQNEITALIGPSGCGKSTYLR 49 (252)
T ss_pred EcCCCEEEEECCCCCCHHHHHH
Confidence 4678899999999999998654
No 487
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=77.28 E-value=1.4 Score=41.73 Aligned_cols=21 Identities=29% Similarity=0.460 Sum_probs=17.3
Q ss_pred CeEEEEecCCCCccccHHHHH
Q 038192 51 SAVIICGETGCGKTTQVPQFL 71 (764)
Q Consensus 51 ~vviI~GeTGSGKTTqvPq~L 71 (764)
.++++.|+||+||||.+=.++
T Consensus 4 ~~i~~~G~~g~GKttl~~~l~ 24 (168)
T cd04163 4 GFVAIVGRPNVGKSTLLNALV 24 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHh
Confidence 468899999999999776654
No 488
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=77.27 E-value=1 Score=46.82 Aligned_cols=22 Identities=36% Similarity=0.602 Sum_probs=18.7
Q ss_pred HHcCCeEEEEecCCCCccccHH
Q 038192 47 VNDNSAVIICGETGCGKTTQVP 68 (764)
Q Consensus 47 l~~~~vviI~GeTGSGKTTqvP 68 (764)
+..+.++.|.|+.||||||.+=
T Consensus 28 i~~Ge~~~i~G~nGsGKSTLl~ 49 (237)
T PRK11614 28 INQGEIVTLIGANGAGKTTLLG 49 (237)
T ss_pred EcCCcEEEEECCCCCCHHHHHH
Confidence 4678899999999999998653
No 489
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=77.26 E-value=3.7 Score=40.58 Aligned_cols=36 Identities=25% Similarity=0.473 Sum_probs=24.6
Q ss_pred hHHHHHHHHHcCCeEEEEecCCCCccccHHHHHHHhc
Q 038192 39 MEQEIMEAVNDNSAVIICGETGCGKTTQVPQFLFEAG 75 (764)
Q Consensus 39 ~~~~Il~~l~~~~vviI~GeTGSGKTTqvPq~Lle~~ 75 (764)
.++.+-.+.....-|+|.||+||||+. +-+.|.+..
T Consensus 11 ~~~~~~~~a~~~~pVlI~GE~GtGK~~-lA~~IH~~s 46 (168)
T PF00158_consen 11 LREQAKRAASSDLPVLITGETGTGKEL-LARAIHNNS 46 (168)
T ss_dssp HHHHHHHHTTSTS-EEEECSTTSSHHH-HHHHHHHCS
T ss_pred HHHHHHHHhCCCCCEEEEcCCCCcHHH-HHHHHHHhh
Confidence 344455555556678999999999994 566776644
No 490
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=77.22 E-value=1 Score=47.28 Aligned_cols=22 Identities=32% Similarity=0.718 Sum_probs=18.9
Q ss_pred HHcCCeEEEEecCCCCccccHH
Q 038192 47 VNDNSAVIICGETGCGKTTQVP 68 (764)
Q Consensus 47 l~~~~vviI~GeTGSGKTTqvP 68 (764)
+..++++.|.|+.||||||.+=
T Consensus 27 i~~Ge~~~l~G~nGsGKSTLl~ 48 (253)
T PRK14267 27 IPQNGVFALMGPSGCGKSTLLR 48 (253)
T ss_pred EcCCCEEEEECCCCCCHHHHHH
Confidence 4678899999999999999654
No 491
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=77.22 E-value=1 Score=46.55 Aligned_cols=22 Identities=32% Similarity=0.569 Sum_probs=19.0
Q ss_pred HHcCCeEEEEecCCCCccccHH
Q 038192 47 VNDNSAVIICGETGCGKTTQVP 68 (764)
Q Consensus 47 l~~~~vviI~GeTGSGKTTqvP 68 (764)
+..++++.|.|+.||||||.+=
T Consensus 25 i~~Ge~~~i~G~nGsGKSTLl~ 46 (234)
T cd03251 25 IPAGETVALVGPSGSGKSTLVN 46 (234)
T ss_pred EcCCCEEEEECCCCCCHHHHHH
Confidence 4578899999999999999664
No 492
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=77.21 E-value=1.1 Score=49.60 Aligned_cols=22 Identities=36% Similarity=0.706 Sum_probs=18.5
Q ss_pred HHcCCeEEEEecCCCCccccHH
Q 038192 47 VNDNSAVIICGETGCGKTTQVP 68 (764)
Q Consensus 47 l~~~~vviI~GeTGSGKTTqvP 68 (764)
|..+.++.+-|+.||||||.+=
T Consensus 28 i~~Gef~~lLGPSGcGKTTlLR 49 (352)
T COG3842 28 IKKGEFVTLLGPSGCGKTTLLR 49 (352)
T ss_pred ecCCcEEEEECCCCCCHHHHHH
Confidence 4667888899999999999763
No 493
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=77.19 E-value=1.9 Score=44.32 Aligned_cols=27 Identities=37% Similarity=0.631 Sum_probs=23.6
Q ss_pred cCCeEEEEecCCCCccccHHHHHHHhc
Q 038192 49 DNSAVIICGETGCGKTTQVPQFLFEAG 75 (764)
Q Consensus 49 ~~~vviI~GeTGSGKTTqvPq~Lle~~ 75 (764)
.+.+++|.|++|+|||+..-|++.+..
T Consensus 15 ~g~~~li~G~~G~GKt~~~~~~~~~~~ 41 (224)
T TIGR03880 15 EGHVIVVIGEYGTGKTTFSLQFLYQGL 41 (224)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 478899999999999999999987754
No 494
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=77.15 E-value=1 Score=48.17 Aligned_cols=22 Identities=36% Similarity=0.572 Sum_probs=18.7
Q ss_pred HHcCCeEEEEecCCCCccccHH
Q 038192 47 VNDNSAVIICGETGCGKTTQVP 68 (764)
Q Consensus 47 l~~~~vviI~GeTGSGKTTqvP 68 (764)
+..+.++.|.|+.||||||.+=
T Consensus 30 i~~Ge~~~l~G~nGsGKSTLl~ 51 (280)
T PRK13649 30 IEDGSYTAFIGHTGSGKSTIMQ 51 (280)
T ss_pred EcCCcEEEEECCCCCCHHHHHH
Confidence 3568899999999999999654
No 495
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=77.13 E-value=1 Score=42.98 Aligned_cols=18 Identities=28% Similarity=0.532 Sum_probs=15.0
Q ss_pred eEEEEecCCCCccccHHH
Q 038192 52 AVIICGETGCGKTTQVPQ 69 (764)
Q Consensus 52 vviI~GeTGSGKTTqvPq 69 (764)
+++++|.+||||||.-=+
T Consensus 1 li~l~G~~GsGKST~a~~ 18 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKA 18 (150)
T ss_pred CEEEEcCCCCCHHHHHHH
Confidence 478999999999987554
No 496
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=77.12 E-value=2.9 Score=46.26 Aligned_cols=28 Identities=18% Similarity=0.158 Sum_probs=23.3
Q ss_pred HcCCeEEEEecCCCCccccHHHHHHHhc
Q 038192 48 NDNSAVIICGETGCGKTTQVPQFLFEAG 75 (764)
Q Consensus 48 ~~~~vviI~GeTGSGKTTqvPq~Lle~~ 75 (764)
..+.++.|.|++|||||+..-|+.+...
T Consensus 124 ~~G~ItEI~G~~GsGKTql~lqlav~~q 151 (344)
T PLN03187 124 ETRCITEAFGEFRSGKTQLAHTLCVTTQ 151 (344)
T ss_pred CCCeEEEEecCCCCChhHHHHHHHHHHh
Confidence 3458899999999999998888877654
No 497
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=77.12 E-value=1 Score=45.94 Aligned_cols=18 Identities=33% Similarity=0.648 Sum_probs=15.1
Q ss_pred EEEEecCCCCccccHHHH
Q 038192 53 VIICGETGCGKTTQVPQF 70 (764)
Q Consensus 53 viI~GeTGSGKTTqvPq~ 70 (764)
++|.|++|||||||--+.
T Consensus 2 I~i~G~pGsGKsT~a~~L 19 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRI 19 (210)
T ss_pred EEEECCCCCCHHHHHHHH
Confidence 678999999999986553
No 498
>PRK14528 adenylate kinase; Provisional
Probab=77.11 E-value=1.1 Score=44.86 Aligned_cols=18 Identities=39% Similarity=0.588 Sum_probs=15.3
Q ss_pred eEEEEecCCCCccccHHH
Q 038192 52 AVIICGETGCGKTTQVPQ 69 (764)
Q Consensus 52 vviI~GeTGSGKTTqvPq 69 (764)
.++|.|++||||||+.-.
T Consensus 3 ~i~i~G~pGsGKtt~a~~ 20 (186)
T PRK14528 3 NIIFMGPPGAGKGTQAKI 20 (186)
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 478999999999998744
No 499
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=77.03 E-value=1 Score=47.45 Aligned_cols=23 Identities=30% Similarity=0.637 Sum_probs=19.4
Q ss_pred HHcCCeEEEEecCCCCccccHHH
Q 038192 47 VNDNSAVIICGETGCGKTTQVPQ 69 (764)
Q Consensus 47 l~~~~vviI~GeTGSGKTTqvPq 69 (764)
+..+.++.|.|+.||||||.+=.
T Consensus 27 i~~Ge~~~i~G~nGsGKSTLl~~ 49 (258)
T PRK14241 27 IEPRSVTAFIGPSGCGKSTVLRT 49 (258)
T ss_pred EcCCcEEEEECCCCCCHHHHHHH
Confidence 45688999999999999997643
No 500
>PRK04040 adenylate kinase; Provisional
Probab=76.99 E-value=1.5 Score=44.16 Aligned_cols=21 Identities=38% Similarity=0.605 Sum_probs=17.5
Q ss_pred CeEEEEecCCCCccccHHHHH
Q 038192 51 SAVIICGETGCGKTTQVPQFL 71 (764)
Q Consensus 51 ~vviI~GeTGSGKTTqvPq~L 71 (764)
.+++|+|.+||||||..-...
T Consensus 3 ~~i~v~G~pG~GKtt~~~~l~ 23 (188)
T PRK04040 3 KVVVVTGVPGVGKTTVLNKAL 23 (188)
T ss_pred eEEEEEeCCCCCHHHHHHHHH
Confidence 468999999999999876544
Done!