Query 038192
Match_columns 764
No_of_seqs 263 out of 2405
Neff 7.3
Searched_HMMs 29240
Date Mon Mar 25 14:26:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038192.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/038192hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xau_A PRE-mRNA-splicing facto 100.0 3.8E-90 1.3E-94 827.4 47.6 525 24-764 83-631 (773)
2 2va8_A SSO2462, SKI2-type heli 100.0 2.9E-51 9.9E-56 490.0 23.3 540 25-761 17-626 (715)
3 2p6r_A Afuhel308 helicase; pro 100.0 1.2E-48 4E-53 466.5 24.5 517 35-761 25-605 (702)
4 2zj8_A DNA helicase, putative 100.0 4E-44 1.4E-48 428.6 22.0 455 35-661 23-532 (720)
5 3o8b_A HCV NS3 protease/helica 100.0 5.7E-36 1.9E-40 348.7 8.6 294 23-538 205-516 (666)
6 2z83_A Helicase/nucleoside tri 100.0 5.8E-34 2E-38 323.3 11.3 278 44-536 15-313 (459)
7 2jlq_A Serine protease subunit 100.0 3.6E-33 1.2E-37 316.1 17.8 278 42-534 11-309 (451)
8 3eiq_A Eukaryotic initiation f 100.0 4.3E-33 1.5E-37 309.6 16.0 324 30-555 57-408 (414)
9 3l9o_A ATP-dependent RNA helic 100.0 2E-32 7E-37 338.5 12.7 348 30-536 179-597 (1108)
10 3fht_A ATP-dependent RNA helic 100.0 2.7E-31 9.1E-36 294.7 18.7 304 37-537 49-380 (412)
11 3pey_A ATP-dependent RNA helic 100.0 1.8E-30 6.1E-35 285.8 22.2 304 35-536 27-356 (395)
12 3i4u_A ATP-dependent RNA helic 100.0 5.6E-31 1.9E-35 276.7 16.1 151 570-764 5-156 (270)
13 4a4z_A Antiviral helicase SKI2 100.0 9.7E-32 3.3E-36 329.7 9.8 400 34-595 38-560 (997)
14 2whx_A Serine protease/ntpase/ 100.0 2.5E-31 8.5E-36 311.2 12.7 287 30-535 169-477 (618)
15 3rc3_A ATP-dependent RNA helic 100.0 1.9E-31 6.3E-36 313.7 10.7 147 437-599 345-499 (677)
16 2db3_A ATP-dependent RNA helic 100.0 8.6E-30 3E-34 286.9 21.8 299 35-536 79-407 (434)
17 3fmp_B ATP-dependent RNA helic 100.0 6.7E-31 2.3E-35 299.2 10.4 304 37-537 116-447 (479)
18 2j0s_A ATP-dependent RNA helic 100.0 9E-30 3.1E-34 283.1 17.4 299 36-538 60-385 (410)
19 1hv8_A Putative ATP-dependent 100.0 1E-28 3.5E-33 269.0 21.9 298 36-539 29-348 (367)
20 1s2m_A Putative ATP-dependent 100.0 1.2E-28 4.2E-33 272.9 20.6 299 36-539 44-368 (400)
21 2i4i_A ATP-dependent RNA helic 100.0 4.7E-29 1.6E-33 277.6 17.0 303 36-539 38-386 (417)
22 1yks_A Genome polyprotein [con 100.0 1.3E-28 4.4E-33 277.9 12.7 274 46-534 4-297 (440)
23 2ykg_A Probable ATP-dependent 100.0 1.6E-28 5.4E-33 292.2 13.9 104 442-565 440-554 (696)
24 1xti_A Probable ATP-dependent 100.0 1.3E-27 4.4E-32 263.4 19.7 298 36-537 31-358 (391)
25 3i5x_A ATP-dependent RNA helic 100.0 1E-27 3.6E-32 278.2 19.2 311 36-538 95-451 (563)
26 2xgj_A ATP-dependent RNA helic 99.9 9.5E-28 3.2E-32 294.5 19.4 367 33-564 84-532 (1010)
27 3sqw_A ATP-dependent RNA helic 99.9 3.5E-27 1.2E-31 275.1 21.2 322 25-538 30-400 (579)
28 2wv9_A Flavivirin protease NS2 99.9 2.3E-28 7.8E-33 288.1 10.8 287 31-534 224-531 (673)
29 3fho_A ATP-dependent RNA helic 99.9 5.2E-29 1.8E-33 286.2 4.6 325 38-559 144-496 (508)
30 1fuu_A Yeast initiation factor 99.9 1.3E-28 4.4E-33 271.4 7.1 301 35-539 43-369 (394)
31 2z0m_A 337AA long hypothetical 99.9 2E-27 6.8E-32 256.0 15.9 284 35-535 16-322 (337)
32 2v6i_A RNA helicase; membrane, 99.9 8.1E-28 2.8E-32 270.6 13.2 269 50-534 2-288 (431)
33 4f92_B U5 small nuclear ribonu 99.9 1.5E-27 5.2E-32 304.9 16.3 430 38-627 929-1435(1724)
34 2v1x_A ATP-dependent DNA helic 99.9 8.9E-27 3E-31 271.6 21.3 292 37-539 46-377 (591)
35 1oyw_A RECQ helicase, ATP-depe 99.9 1.7E-25 5.7E-30 257.7 15.2 287 37-539 27-346 (523)
36 3oiy_A Reverse gyrase helicase 99.9 2E-25 6.9E-30 249.0 14.5 210 28-258 14-273 (414)
37 3tbk_A RIG-I helicase domain; 99.9 1.9E-25 6.5E-30 257.0 11.3 144 35-181 4-175 (555)
38 3llm_A ATP-dependent RNA helic 99.9 1.1E-25 3.7E-30 232.6 8.3 170 26-200 52-235 (235)
39 1gku_B Reverse gyrase, TOP-RG; 99.9 5.4E-25 1.9E-29 272.0 12.5 198 38-255 59-293 (1054)
40 4f92_B U5 small nuclear ribonu 99.9 8.6E-24 2.9E-28 270.4 22.6 437 39-627 83-604 (1724)
41 1wp9_A ATP-dependent RNA helic 99.9 2.8E-25 9.4E-30 249.6 7.1 141 33-181 7-167 (494)
42 4a2p_A RIG-I, retinoic acid in 99.9 2.5E-25 8.7E-30 256.5 5.7 84 437-539 427-511 (556)
43 4gl2_A Interferon-induced heli 99.9 1E-24 3.6E-29 259.4 6.3 151 31-182 3-193 (699)
44 1gm5_A RECG; helicase, replica 99.9 7.2E-25 2.5E-29 261.5 4.6 312 25-534 356-695 (780)
45 4ddu_A Reverse gyrase; topoiso 99.9 5E-24 1.7E-28 263.6 10.4 204 35-258 78-330 (1104)
46 4a2q_A RIG-I, retinoic acid in 99.9 6.5E-23 2.2E-27 247.7 12.0 83 437-538 668-751 (797)
47 2eyq_A TRCF, transcription-rep 99.9 6.4E-23 2.2E-27 255.1 11.6 294 37-536 605-922 (1151)
48 3eaq_A Heat resistant RNA depe 99.9 4.3E-23 1.5E-27 210.0 7.6 136 437-591 56-211 (212)
49 4a2w_A RIG-I, retinoic acid in 99.9 2.5E-22 8.6E-27 246.0 13.8 84 437-539 668-752 (936)
50 2fwr_A DNA repair protein RAD2 99.9 7.2E-23 2.5E-27 232.4 5.8 130 33-181 91-229 (472)
51 3i32_A Heat resistant RNA depe 99.9 9.1E-23 3.1E-27 218.2 5.1 141 437-596 53-213 (300)
52 2oca_A DAR protein, ATP-depend 99.8 1.2E-21 4.1E-26 224.5 5.1 140 35-181 113-263 (510)
53 1tf5_A Preprotein translocase 99.8 1.1E-19 3.8E-24 213.9 15.0 82 436-537 456-546 (844)
54 2fsf_A Preprotein translocase 99.8 1.6E-18 5.4E-23 203.7 16.4 113 34-157 74-208 (853)
55 1nkt_A Preprotein translocase 99.7 6.8E-18 2.3E-22 198.5 15.8 113 34-157 111-245 (922)
56 3h1t_A Type I site-specific re 99.7 2.3E-18 8E-23 201.0 8.5 139 36-181 179-342 (590)
57 2rb4_A ATP-dependent RNA helic 99.6 1.1E-14 3.7E-19 143.0 11.5 90 437-538 59-149 (175)
58 2hjv_A ATP-dependent RNA helic 99.5 2.1E-14 7.2E-19 139.4 11.0 84 437-538 60-144 (163)
59 1fuk_A Eukaryotic initiation f 99.5 1.4E-14 4.8E-19 140.8 9.8 84 437-538 55-139 (165)
60 3dmq_A RNA polymerase-associat 99.5 5E-15 1.7E-19 181.8 7.6 84 436-537 528-616 (968)
61 2pl3_A Probable ATP-dependent 99.5 2.9E-14 9.8E-19 146.3 11.6 167 34-203 46-235 (236)
62 3ber_A Probable ATP-dependent 99.5 2E-14 7E-19 149.3 9.8 159 35-200 65-247 (249)
63 1qde_A EIF4A, translation init 99.5 2.9E-14 9.9E-19 144.9 10.6 166 35-207 36-223 (224)
64 3fmo_B ATP-dependent RNA helic 99.5 7.2E-14 2.5E-18 149.4 12.0 157 38-201 117-298 (300)
65 1t5i_A C_terminal domain of A 99.5 5.1E-14 1.7E-18 138.1 9.4 82 437-536 56-138 (172)
66 2jgn_A DBX, DDX3, ATP-dependen 99.5 5.1E-14 1.8E-18 139.8 8.9 84 437-538 71-155 (185)
67 2p6n_A ATP-dependent RNA helic 99.5 4.7E-14 1.6E-18 140.8 8.1 82 437-536 79-161 (191)
68 3dkp_A Probable ATP-dependent 99.5 8E-14 2.7E-18 143.8 9.9 162 36-203 52-243 (245)
69 3bor_A Human initiation factor 99.5 6.3E-14 2.1E-18 144.3 8.4 158 36-200 53-234 (237)
70 1c4o_A DNA nucleotide excision 99.5 8.4E-14 2.9E-18 164.4 9.8 86 438-536 465-550 (664)
71 3iuy_A Probable ATP-dependent 99.4 1.8E-13 6.1E-18 139.6 10.7 160 36-199 43-227 (228)
72 2d7d_A Uvrabc system protein B 99.4 6.6E-14 2.3E-18 165.2 8.5 86 438-536 471-556 (661)
73 2oxc_A Probable ATP-dependent 99.4 2.2E-13 7.5E-18 139.5 10.7 159 36-200 47-228 (230)
74 3jux_A Protein translocase sub 99.4 1.1E-12 3.7E-17 151.7 17.5 101 438-568 500-609 (822)
75 1z63_A Helicase of the SNF2/RA 99.4 2.6E-13 8.7E-18 154.8 11.7 85 437-539 367-456 (500)
76 1q0u_A Bstdead; DEAD protein, 99.4 1.9E-13 6.5E-18 138.7 9.3 158 36-200 27-211 (219)
77 2gxq_A Heat resistant RNA depe 99.4 3E-13 1E-17 135.4 9.8 160 35-200 23-205 (207)
78 3fe2_A Probable ATP-dependent 99.4 2.1E-13 7.1E-18 140.7 8.7 164 36-202 52-239 (242)
79 1vec_A ATP-dependent RNA helic 99.4 3.6E-13 1.2E-17 134.8 10.2 153 36-195 26-202 (206)
80 3ly5_A ATP-dependent RNA helic 99.4 1.5E-13 5E-18 144.0 7.5 158 36-196 77-258 (262)
81 2w00_A HSDR, R.ECOR124I; ATP-b 99.4 3.1E-13 1.1E-17 165.5 10.2 124 51-181 301-439 (1038)
82 1t6n_A Probable ATP-dependent 99.4 9.5E-13 3.3E-17 133.4 10.7 158 36-199 37-219 (220)
83 1wrb_A DJVLGB; RNA helicase, D 99.3 9E-13 3.1E-17 136.7 7.6 163 36-201 46-240 (253)
84 2yjt_D ATP-dependent RNA helic 99.0 9.3E-14 3.2E-18 135.7 0.0 85 436-538 54-139 (170)
85 3mwy_W Chromo domain-containin 99.2 2.7E-11 9.3E-16 146.2 8.9 87 436-540 596-688 (800)
86 1z3i_X Similar to RAD54-like; 99.1 1.2E-10 4E-15 137.3 12.3 86 436-539 440-531 (644)
87 3b6e_A Interferon-induced heli 99.0 7.7E-11 2.6E-15 118.2 2.7 147 30-179 28-216 (216)
88 1rif_A DAR protein, DNA helica 98.9 9.2E-10 3.2E-14 116.0 4.2 140 34-180 112-262 (282)
89 2fz4_A DNA repair protein RAD2 98.6 2.6E-08 8.9E-13 102.5 4.7 128 35-181 93-229 (237)
90 2vl7_A XPD; helicase, unknown 98.5 3.9E-07 1.3E-11 105.0 13.3 54 43-106 19-72 (540)
91 1z5z_A Helicase of the SNF2/RA 98.5 3.6E-08 1.2E-12 103.5 3.6 85 437-539 138-227 (271)
92 2ipc_A Preprotein translocase 97.8 1.2E-05 4.3E-10 95.1 6.0 102 34-146 79-185 (997)
93 3crv_A XPD/RAD3 related DNA he 97.1 0.00028 9.5E-09 81.3 5.2 52 42-103 14-65 (551)
94 4b3f_X DNA-binding protein smu 96.7 0.0021 7.1E-08 75.4 7.3 63 38-107 193-255 (646)
95 1w36_D RECD, exodeoxyribonucle 95.7 0.012 4.2E-07 68.3 7.1 63 40-107 154-218 (608)
96 2gk6_A Regulator of nonsense t 95.4 0.022 7.5E-07 66.4 7.6 65 37-107 182-246 (624)
97 2wjy_A Regulator of nonsense t 94.8 0.038 1.3E-06 66.2 7.6 65 37-107 358-422 (800)
98 2xzl_A ATP-dependent helicase 94.7 0.027 9.2E-07 67.5 6.0 64 38-107 363-426 (802)
99 4a15_A XPD helicase, ATP-depen 94.3 0.043 1.5E-06 63.9 6.3 59 41-105 13-71 (620)
100 3upu_A ATP-dependent DNA helic 94.1 0.082 2.8E-06 59.1 7.9 54 46-105 40-94 (459)
101 3e1s_A Exodeoxyribonuclease V, 94.0 0.069 2.4E-06 61.6 7.2 63 36-105 190-252 (574)
102 2ipc_A Preprotein translocase 93.1 0.34 1.2E-05 57.9 11.0 77 172-258 380-464 (997)
103 3b85_A Phosphate starvation-in 92.9 0.061 2.1E-06 53.6 3.8 32 39-70 11-42 (208)
104 3lfu_A DNA helicase II; SF1 he 92.9 0.15 5.2E-06 59.2 7.8 69 38-111 12-80 (647)
105 3tr0_A Guanylate kinase, GMP k 90.7 0.07 2.4E-06 52.0 1.3 24 47-70 4-27 (205)
106 1kgd_A CASK, peripheral plasma 90.6 0.079 2.7E-06 51.0 1.6 22 49-70 4-25 (180)
107 2b8t_A Thymidine kinase; deoxy 90.6 0.11 3.9E-06 52.2 2.8 41 48-95 10-50 (223)
108 2eyu_A Twitching motility prot 90.1 0.066 2.3E-06 55.3 0.6 24 47-70 22-45 (261)
109 3ec2_A DNA replication protein 90.1 0.16 5.6E-06 48.5 3.3 22 49-70 37-58 (180)
110 2oap_1 GSPE-2, type II secreti 90.0 0.13 4.3E-06 58.5 2.8 29 41-69 251-279 (511)
111 2j41_A Guanylate kinase; GMP, 89.9 0.091 3.1E-06 51.2 1.3 23 47-69 3-25 (207)
112 1znw_A Guanylate kinase, GMP k 89.8 0.1 3.5E-06 51.4 1.6 24 46-69 16-39 (207)
113 3co5_A Putative two-component 89.7 0.15 5.1E-06 47.2 2.6 26 40-65 17-42 (143)
114 3dm5_A SRP54, signal recogniti 89.6 0.25 8.7E-06 54.8 4.8 55 51-110 101-155 (443)
115 4gp7_A Metallophosphoesterase; 89.1 0.073 2.5E-06 50.9 -0.0 22 48-69 7-28 (171)
116 1zp6_A Hypothetical protein AT 89.0 0.082 2.8E-06 51.0 0.3 25 46-70 5-29 (191)
117 1lvg_A Guanylate kinase, GMP k 89.0 0.11 3.8E-06 51.0 1.2 22 49-70 3-24 (198)
118 3n70_A Transport activator; si 88.9 0.16 5.3E-06 47.1 2.1 31 43-74 17-47 (145)
119 1uaa_A REP helicase, protein ( 88.7 0.37 1.3E-05 56.4 5.6 64 39-111 6-73 (673)
120 1z6g_A Guanylate kinase; struc 88.7 0.13 4.3E-06 51.4 1.4 24 47-70 20-43 (218)
121 3lnc_A Guanylate kinase, GMP k 88.5 0.11 3.9E-06 52.0 0.9 24 47-70 24-47 (231)
122 3a00_A Guanylate kinase, GMP k 88.4 0.13 4.5E-06 49.7 1.3 21 50-70 1-21 (186)
123 1vma_A Cell division protein F 88.4 0.48 1.6E-05 50.0 5.7 56 50-110 104-159 (306)
124 2gza_A Type IV secretion syste 88.4 0.24 8.1E-06 53.6 3.4 29 43-71 168-196 (361)
125 2pt7_A CAG-ALFA; ATPase, prote 88.4 0.19 6.5E-06 53.7 2.6 27 43-69 164-190 (330)
126 3kl4_A SRP54, signal recogniti 88.2 0.37 1.3E-05 53.4 4.8 56 51-111 98-153 (433)
127 3tau_A Guanylate kinase, GMP k 88.2 0.15 5.2E-06 50.3 1.6 24 48-71 6-29 (208)
128 2orw_A Thymidine kinase; TMTK, 88.1 0.31 1E-05 47.3 3.7 38 50-94 3-40 (184)
129 1pjr_A PCRA; DNA repair, DNA r 87.8 0.56 1.9E-05 55.5 6.4 69 38-111 14-82 (724)
130 3u4q_A ATP-dependent helicase/ 87.7 0.45 1.5E-05 59.9 5.7 71 37-110 12-82 (1232)
131 3e70_C DPA, signal recognition 87.5 0.41 1.4E-05 51.0 4.6 57 49-110 128-184 (328)
132 3lw7_A Adenylate kinase relate 87.5 0.15 5.3E-06 47.7 1.1 20 51-70 2-21 (179)
133 2w58_A DNAI, primosome compone 87.4 0.3 1E-05 47.4 3.2 28 42-69 40-73 (202)
134 3jvv_A Twitching mobility prot 87.4 0.15 5.2E-06 55.0 1.1 23 48-70 121-143 (356)
135 1njg_A DNA polymerase III subu 87.4 0.37 1.3E-05 47.2 3.8 32 40-71 32-66 (250)
136 2c95_A Adenylate kinase 1; tra 87.1 0.22 7.4E-06 48.0 1.9 24 47-70 6-29 (196)
137 2bwj_A Adenylate kinase 5; pho 87.0 0.25 8.6E-06 47.7 2.3 24 46-69 8-31 (199)
138 3umf_A Adenylate kinase; rossm 86.9 0.15 5E-06 51.2 0.5 23 48-70 27-49 (217)
139 1jbk_A CLPB protein; beta barr 86.8 0.42 1.4E-05 45.1 3.8 30 41-70 32-63 (195)
140 1s96_A Guanylate kinase, GMP k 86.7 0.21 7.2E-06 50.0 1.6 25 46-70 12-36 (219)
141 1kht_A Adenylate kinase; phosp 86.6 0.2 6.9E-06 47.9 1.4 20 50-69 3-22 (192)
142 3vaa_A Shikimate kinase, SK; s 86.6 0.2 7E-06 48.8 1.4 23 47-69 22-44 (199)
143 3tif_A Uncharacterized ABC tra 86.2 0.17 5.7E-06 51.3 0.6 22 47-68 28-49 (235)
144 2qor_A Guanylate kinase; phosp 86.1 0.17 5.7E-06 49.7 0.5 24 47-70 9-32 (204)
145 1zd8_A GTP:AMP phosphotransfer 86.0 0.23 7.9E-06 49.5 1.5 23 48-70 5-27 (227)
146 2zts_A Putative uncharacterize 85.7 0.25 8.6E-06 49.4 1.6 29 47-75 27-55 (251)
147 1zuh_A Shikimate kinase; alpha 85.5 0.24 8.1E-06 46.7 1.2 23 50-73 7-29 (168)
148 3b9q_A Chloroplast SRP recepto 85.5 0.54 1.8E-05 49.5 4.1 22 50-71 100-121 (302)
149 2kjq_A DNAA-related protein; s 85.5 0.31 1.1E-05 45.6 2.0 22 49-70 35-56 (149)
150 4eun_A Thermoresistant glucoki 85.4 0.27 9.1E-06 48.0 1.6 23 48-70 27-49 (200)
151 2ehv_A Hypothetical protein PH 85.4 0.24 8.1E-06 49.7 1.2 26 46-71 26-51 (251)
152 1htw_A HI0065; nucleotide-bind 85.3 0.34 1.2E-05 45.9 2.2 23 48-70 31-53 (158)
153 2p65_A Hypothetical protein PF 85.2 0.42 1.4E-05 45.0 2.8 30 42-71 33-64 (187)
154 2cbz_A Multidrug resistance-as 85.1 0.2 7E-06 50.7 0.6 23 47-69 28-50 (237)
155 3ney_A 55 kDa erythrocyte memb 85.1 0.35 1.2E-05 47.7 2.3 23 49-71 18-40 (197)
156 1ly1_A Polynucleotide kinase; 85.1 0.25 8.4E-06 46.8 1.1 19 51-69 3-21 (181)
157 1kag_A SKI, shikimate kinase I 85.1 0.27 9.1E-06 46.4 1.3 19 50-68 4-22 (173)
158 2chg_A Replication factor C sm 85.0 0.56 1.9E-05 45.3 3.8 32 40-71 26-59 (226)
159 3kb2_A SPBC2 prophage-derived 85.0 0.25 8.5E-06 46.4 1.1 18 52-69 3-20 (173)
160 2pcj_A ABC transporter, lipopr 84.9 0.21 7.3E-06 50.1 0.6 23 47-69 27-49 (224)
161 1xx6_A Thymidine kinase; NESG, 84.9 0.42 1.4E-05 46.8 2.7 39 49-94 7-45 (191)
162 2ewv_A Twitching motility prot 84.8 0.25 8.6E-06 53.6 1.1 25 47-71 133-157 (372)
163 4a74_A DNA repair and recombin 84.7 0.23 7.8E-06 49.1 0.7 27 46-72 21-47 (231)
164 2dr3_A UPF0273 protein PH0284; 84.7 0.54 1.9E-05 46.8 3.6 29 47-75 20-48 (247)
165 3cm0_A Adenylate kinase; ATP-b 84.6 0.21 7.3E-06 47.7 0.4 21 50-70 4-24 (186)
166 3c8u_A Fructokinase; YP_612366 84.5 0.26 9E-06 48.5 1.0 20 49-68 21-40 (208)
167 1p9r_A General secretion pathw 84.4 0.54 1.9E-05 51.8 3.6 24 49-72 166-189 (418)
168 2px0_A Flagellar biosynthesis 84.3 0.71 2.4E-05 48.4 4.3 54 49-106 104-157 (296)
169 3trf_A Shikimate kinase, SK; a 84.2 0.31 1.1E-05 46.6 1.4 20 50-69 5-24 (185)
170 3kta_A Chromosome segregation 84.0 0.32 1.1E-05 46.4 1.4 20 51-70 27-46 (182)
171 3gfo_A Cobalt import ATP-bindi 83.9 0.24 8.1E-06 51.5 0.5 23 47-69 31-53 (275)
172 3sr0_A Adenylate kinase; phosp 83.9 0.3 1E-05 48.5 1.1 18 52-69 2-19 (206)
173 3asz_A Uridine kinase; cytidin 83.9 0.3 1E-05 47.8 1.2 22 48-69 4-25 (211)
174 1sgw_A Putative ABC transporte 83.8 0.23 7.8E-06 49.6 0.3 23 47-69 32-54 (214)
175 2v54_A DTMP kinase, thymidylat 83.8 0.35 1.2E-05 46.9 1.6 21 49-69 3-23 (204)
176 1tev_A UMP-CMP kinase; ploop, 83.7 0.3 1E-05 46.7 1.1 20 50-69 3-22 (196)
177 2z0h_A DTMP kinase, thymidylat 83.7 0.32 1.1E-05 46.8 1.3 19 52-70 2-20 (197)
178 2pze_A Cystic fibrosis transme 83.7 0.25 8.6E-06 49.7 0.5 22 48-69 32-53 (229)
179 1cke_A CK, MSSA, protein (cyti 83.6 0.33 1.1E-05 48.1 1.3 20 50-69 5-24 (227)
180 2cvh_A DNA repair and recombin 83.5 0.28 9.5E-06 48.1 0.8 27 46-72 16-42 (220)
181 2vp4_A Deoxynucleoside kinase; 83.5 0.28 9.7E-06 49.1 0.8 21 49-69 19-39 (230)
182 1nks_A Adenylate kinase; therm 83.5 0.32 1.1E-05 46.4 1.2 19 52-70 3-21 (194)
183 1g6h_A High-affinity branched- 83.4 0.26 9E-06 50.5 0.5 23 47-69 30-52 (257)
184 2ff7_A Alpha-hemolysin translo 83.3 0.27 9.1E-06 50.2 0.5 22 48-69 33-54 (247)
185 1b0u_A Histidine permease; ABC 83.2 0.27 9.3E-06 50.6 0.6 23 47-69 29-51 (262)
186 1qf9_A UMP/CMP kinase, protein 83.2 0.34 1.2E-05 46.3 1.2 19 51-69 7-25 (194)
187 1knq_A Gluconate kinase; ALFA/ 83.2 0.31 1.1E-05 46.1 0.9 20 50-69 8-27 (175)
188 1ji0_A ABC transporter; ATP bi 83.0 0.28 9.5E-06 49.8 0.5 23 47-69 29-51 (240)
189 1qhx_A CPT, protein (chloramph 83.0 0.39 1.3E-05 45.5 1.5 19 50-68 3-21 (178)
190 2rhm_A Putative kinase; P-loop 82.9 0.33 1.1E-05 46.5 1.0 21 50-70 5-25 (193)
191 2ghi_A Transport protein; mult 82.9 0.28 9.7E-06 50.4 0.6 23 47-69 43-65 (260)
192 1mv5_A LMRA, multidrug resista 82.8 0.25 8.5E-06 50.2 0.1 23 47-69 25-47 (243)
193 1rz3_A Hypothetical protein rb 82.8 0.53 1.8E-05 46.0 2.5 28 42-69 9-41 (201)
194 1j8m_F SRP54, signal recogniti 82.8 1.1 3.8E-05 46.9 5.1 56 50-110 98-153 (297)
195 2d2e_A SUFC protein; ABC-ATPas 82.8 0.29 9.8E-06 50.0 0.5 23 47-69 26-48 (250)
196 3vkw_A Replicase large subunit 82.8 0.65 2.2E-05 51.5 3.4 45 50-106 161-205 (446)
197 2jaq_A Deoxyguanosine kinase; 82.7 0.37 1.3E-05 46.6 1.3 18 52-69 2-19 (205)
198 2bbw_A Adenylate kinase 4, AK4 82.7 0.39 1.3E-05 48.5 1.4 22 50-71 27-48 (246)
199 2zu0_C Probable ATP-dependent 82.6 0.3 1E-05 50.5 0.6 23 47-69 43-65 (267)
200 2ze6_A Isopentenyl transferase 82.6 0.37 1.3E-05 49.2 1.2 18 52-69 3-20 (253)
201 3t61_A Gluconokinase; PSI-biol 82.6 0.34 1.2E-05 47.1 1.0 19 51-69 19-37 (202)
202 4g1u_C Hemin import ATP-bindin 82.6 0.29 1E-05 50.5 0.5 23 47-69 34-56 (266)
203 2vli_A Antibiotic resistance p 82.6 0.4 1.4E-05 45.5 1.5 20 50-69 5-24 (183)
204 2w0m_A SSO2452; RECA, SSPF, un 82.6 0.37 1.3E-05 47.5 1.2 28 46-73 19-46 (235)
205 1gtv_A TMK, thymidylate kinase 82.5 0.22 7.6E-06 48.8 -0.5 19 52-70 2-20 (214)
206 1vpl_A ABC transporter, ATP-bi 82.4 0.31 1E-05 50.1 0.6 23 47-69 38-60 (256)
207 2olj_A Amino acid ABC transpor 82.4 0.31 1.1E-05 50.3 0.6 23 47-69 47-69 (263)
208 2pez_A Bifunctional 3'-phospho 82.4 0.37 1.3E-05 45.9 1.1 20 49-68 4-23 (179)
209 3iij_A Coilin-interacting nucl 82.3 0.38 1.3E-05 45.8 1.2 21 49-69 10-30 (180)
210 1ye8_A Protein THEP1, hypothet 82.2 0.4 1.4E-05 46.2 1.3 18 52-69 2-19 (178)
211 2pbr_A DTMP kinase, thymidylat 82.1 0.38 1.3E-05 46.0 1.1 18 52-69 2-19 (195)
212 2bdt_A BH3686; alpha-beta prot 82.0 0.32 1.1E-05 46.7 0.5 20 51-70 3-22 (189)
213 3bos_A Putative DNA replicatio 82.0 1 3.5E-05 44.3 4.3 24 49-72 51-74 (242)
214 2qt1_A Nicotinamide riboside k 82.0 0.31 1.1E-05 47.7 0.4 22 48-69 19-40 (207)
215 2ixe_A Antigen peptide transpo 82.0 0.33 1.1E-05 50.3 0.6 23 47-69 42-64 (271)
216 3exa_A TRNA delta(2)-isopenten 82.0 0.38 1.3E-05 51.0 1.0 19 50-68 3-21 (322)
217 2yz2_A Putative ABC transporte 81.9 0.33 1.1E-05 50.1 0.6 23 47-69 30-52 (266)
218 2qen_A Walker-type ATPase; unk 81.9 0.85 2.9E-05 47.8 3.8 31 43-73 24-54 (350)
219 2ihy_A ABC transporter, ATP-bi 81.8 0.33 1.1E-05 50.5 0.5 23 47-69 44-66 (279)
220 2wwf_A Thymidilate kinase, put 81.8 0.45 1.5E-05 46.4 1.5 22 49-70 9-30 (212)
221 1ukz_A Uridylate kinase; trans 81.8 0.4 1.4E-05 46.6 1.1 20 51-70 16-35 (203)
222 2nq2_C Hypothetical ABC transp 81.6 0.34 1.2E-05 49.7 0.5 23 47-69 28-50 (253)
223 2og2_A Putative signal recogni 81.5 0.95 3.3E-05 48.8 4.0 22 50-71 157-178 (359)
224 1e6c_A Shikimate kinase; phosp 81.2 0.41 1.4E-05 45.0 1.0 19 51-69 3-21 (173)
225 3bh0_A DNAB-like replicative h 81.2 0.7 2.4E-05 48.8 2.8 38 39-76 57-94 (315)
226 3tqc_A Pantothenate kinase; bi 81.2 0.83 2.8E-05 48.5 3.4 18 52-69 94-111 (321)
227 2qi9_C Vitamin B12 import ATP- 81.1 0.36 1.2E-05 49.4 0.5 23 47-69 23-45 (249)
228 3fb4_A Adenylate kinase; psych 81.1 0.43 1.5E-05 46.8 1.1 19 52-70 2-20 (216)
229 1e9r_A Conjugal transfer prote 80.9 0.69 2.4E-05 51.0 2.8 42 50-98 53-94 (437)
230 2v9p_A Replication protein E1; 80.8 0.48 1.6E-05 50.0 1.4 25 46-70 122-146 (305)
231 1nn5_A Similar to deoxythymidy 80.8 0.5 1.7E-05 46.1 1.4 22 49-70 8-29 (215)
232 2bjv_A PSP operon transcriptio 80.8 0.6 2E-05 47.5 2.1 28 46-74 25-52 (265)
233 2plr_A DTMP kinase, probable t 80.8 0.43 1.5E-05 46.4 0.9 21 50-70 4-24 (213)
234 3a8t_A Adenylate isopentenyltr 80.7 0.44 1.5E-05 50.9 1.1 19 50-68 40-58 (339)
235 3nh6_A ATP-binding cassette SU 80.6 0.26 9E-06 52.0 -0.7 22 47-68 77-98 (306)
236 1rj9_A FTSY, signal recognitio 80.6 0.94 3.2E-05 47.7 3.6 22 50-71 102-123 (304)
237 1sxj_C Activator 1 40 kDa subu 80.5 0.72 2.5E-05 49.0 2.7 31 40-70 34-66 (340)
238 1y63_A LMAJ004144AAA protein; 80.5 0.52 1.8E-05 45.3 1.4 24 50-74 10-33 (184)
239 1aky_A Adenylate kinase; ATP:A 80.5 0.52 1.8E-05 46.6 1.5 21 50-70 4-24 (220)
240 2pt5_A Shikimate kinase, SK; a 80.5 0.47 1.6E-05 44.5 1.1 18 52-69 2-19 (168)
241 3b9p_A CG5977-PA, isoform A; A 80.4 0.72 2.5E-05 47.7 2.6 21 50-70 54-74 (297)
242 3tlx_A Adenylate kinase 2; str 80.4 0.47 1.6E-05 48.1 1.1 21 51-71 30-50 (243)
243 2cdn_A Adenylate kinase; phosp 80.3 0.48 1.6E-05 46.1 1.1 19 51-69 21-39 (201)
244 1n0w_A DNA repair protein RAD5 80.3 0.51 1.7E-05 47.0 1.3 28 47-74 21-48 (243)
245 1cr0_A DNA primase/helicase; R 80.3 0.46 1.6E-05 49.4 1.0 36 40-75 25-60 (296)
246 2yvu_A Probable adenylyl-sulfa 80.3 0.48 1.7E-05 45.4 1.1 22 49-70 12-33 (186)
247 3uie_A Adenylyl-sulfate kinase 80.2 0.55 1.9E-05 45.7 1.5 22 48-69 23-44 (200)
248 1f2t_A RAD50 ABC-ATPase; DNA d 80.2 0.53 1.8E-05 44.0 1.3 19 51-69 24-42 (149)
249 2i3b_A HCR-ntpase, human cance 80.2 0.51 1.7E-05 46.1 1.2 21 50-70 1-21 (189)
250 3foz_A TRNA delta(2)-isopenten 80.2 0.47 1.6E-05 50.1 1.0 19 51-69 11-29 (316)
251 1m7g_A Adenylylsulfate kinase; 80.0 0.43 1.5E-05 46.9 0.7 23 47-69 22-44 (211)
252 3dl0_A Adenylate kinase; phosp 80.0 0.5 1.7E-05 46.4 1.1 18 53-70 3-20 (216)
253 2bbs_A Cystic fibrosis transme 79.9 0.44 1.5E-05 49.9 0.7 22 48-69 62-83 (290)
254 1ofh_A ATP-dependent HSL prote 79.9 0.86 3E-05 47.0 3.0 21 50-70 50-70 (310)
255 1zak_A Adenylate kinase; ATP:A 79.9 0.49 1.7E-05 46.9 1.0 20 51-70 6-25 (222)
256 1ex7_A Guanylate kinase; subst 79.8 0.68 2.3E-05 45.1 2.0 21 51-71 2-22 (186)
257 2qby_B CDC6 homolog 3, cell di 79.7 0.95 3.2E-05 48.4 3.3 21 50-70 45-65 (384)
258 4eaq_A DTMP kinase, thymidylat 79.7 0.51 1.7E-05 47.4 1.1 22 49-70 25-46 (229)
259 1nlf_A Regulatory protein REPA 79.6 0.56 1.9E-05 48.3 1.4 28 46-73 26-53 (279)
260 1vht_A Dephospho-COA kinase; s 79.6 0.45 1.6E-05 46.9 0.7 20 50-69 4-23 (218)
261 3fvq_A Fe(3+) IONS import ATP- 79.4 0.46 1.6E-05 51.3 0.7 23 47-69 27-49 (359)
262 2qmh_A HPR kinase/phosphorylas 79.4 0.71 2.4E-05 45.6 2.0 21 50-70 34-54 (205)
263 1e4v_A Adenylate kinase; trans 79.2 0.53 1.8E-05 46.3 1.0 18 53-70 3-20 (214)
264 2iyv_A Shikimate kinase, SK; t 79.1 0.55 1.9E-05 44.8 1.1 18 51-68 3-20 (184)
265 2onk_A Molybdate/tungstate ABC 79.1 0.44 1.5E-05 48.4 0.4 21 48-69 23-43 (240)
266 1np6_A Molybdopterin-guanine d 79.0 0.77 2.6E-05 44.2 2.1 23 50-72 6-28 (174)
267 1fnn_A CDC6P, cell division co 79.0 2.7 9.2E-05 44.7 6.7 21 52-72 46-66 (389)
268 1gvn_B Zeta; postsegregational 79.0 1.1 3.9E-05 46.5 3.5 21 51-71 34-54 (287)
269 1xjc_A MOBB protein homolog; s 79.0 0.79 2.7E-05 44.0 2.1 22 51-72 5-26 (169)
270 3h4m_A Proteasome-activating n 78.7 0.83 2.8E-05 46.9 2.4 22 49-70 50-71 (285)
271 1uf9_A TT1252 protein; P-loop, 78.6 0.6 2.1E-05 45.1 1.2 22 51-73 9-30 (203)
272 2if2_A Dephospho-COA kinase; a 78.5 0.61 2.1E-05 45.3 1.2 17 52-68 3-19 (204)
273 2jeo_A Uridine-cytidine kinase 78.5 0.53 1.8E-05 47.5 0.8 23 47-69 22-44 (245)
274 2xb4_A Adenylate kinase; ATP-b 78.5 0.59 2E-05 46.5 1.1 19 52-70 2-20 (223)
275 2pjz_A Hypothetical protein ST 78.4 0.49 1.7E-05 48.8 0.5 22 47-69 28-49 (263)
276 3rlf_A Maltose/maltodextrin im 78.4 0.5 1.7E-05 51.4 0.6 22 48-69 27-48 (381)
277 3d3q_A TRNA delta(2)-isopenten 78.3 0.62 2.1E-05 49.9 1.2 17 51-67 8-24 (340)
278 2ffh_A Protein (FFH); SRP54, s 78.0 2.2 7.5E-05 47.0 5.6 56 50-110 98-153 (425)
279 1z47_A CYSA, putative ABC-tran 77.8 0.52 1.8E-05 50.8 0.5 23 47-69 38-60 (355)
280 1jjv_A Dephospho-COA kinase; P 77.6 0.65 2.2E-05 45.2 1.1 18 52-69 4-21 (206)
281 3v9p_A DTMP kinase, thymidylat 77.5 0.68 2.3E-05 46.6 1.2 22 48-69 23-44 (227)
282 1odf_A YGR205W, hypothetical 3 77.4 0.93 3.2E-05 47.3 2.3 17 51-67 32-48 (290)
283 4tmk_A Protein (thymidylate ki 77.3 0.81 2.8E-05 45.5 1.7 20 50-69 3-22 (213)
284 2yyz_A Sugar ABC transporter, 77.3 0.56 1.9E-05 50.6 0.6 22 48-69 27-48 (359)
285 3be4_A Adenylate kinase; malar 77.3 0.7 2.4E-05 45.7 1.2 19 51-69 6-24 (217)
286 2it1_A 362AA long hypothetical 77.2 0.57 1.9E-05 50.7 0.6 22 48-69 27-48 (362)
287 3gd7_A Fusion complex of cysti 77.2 0.58 2E-05 51.1 0.7 23 47-69 44-66 (390)
288 3crm_A TRNA delta(2)-isopenten 77.0 0.71 2.4E-05 49.1 1.2 16 51-66 6-21 (323)
289 1lv7_A FTSH; alpha/beta domain 76.9 1.1 3.8E-05 45.2 2.7 21 50-70 45-65 (257)
290 2v26_A Myosin VI; calmodulin-b 76.9 1.3 4.5E-05 52.6 3.6 44 31-74 116-167 (784)
291 1sxj_D Activator 1 41 kDa subu 76.9 0.9 3.1E-05 47.9 2.0 30 40-69 46-77 (353)
292 3cpe_A Terminase, DNA packagin 76.8 5.3 0.00018 45.9 8.6 72 34-110 162-233 (592)
293 3auy_A DNA double-strand break 76.8 0.74 2.5E-05 49.7 1.4 20 51-70 26-45 (371)
294 1in4_A RUVB, holliday junction 76.8 0.95 3.3E-05 48.0 2.2 21 51-71 52-72 (334)
295 1tf7_A KAIC; homohexamer, hexa 76.7 0.79 2.7E-05 52.0 1.6 32 42-73 30-62 (525)
296 3qf7_A RAD50; ABC-ATPase, ATPa 76.6 0.74 2.5E-05 49.7 1.3 45 444-490 314-362 (365)
297 1ak2_A Adenylate kinase isoenz 76.5 0.73 2.5E-05 46.1 1.1 20 51-70 17-36 (233)
298 3aez_A Pantothenate kinase; tr 76.4 0.57 1.9E-05 49.5 0.3 22 47-68 87-108 (312)
299 1tq4_A IIGP1, interferon-induc 76.4 1.2 4E-05 49.1 2.8 19 52-70 71-89 (413)
300 2qgz_A Helicase loader, putati 76.3 1.4 4.7E-05 46.4 3.2 19 50-68 152-170 (308)
301 4edh_A DTMP kinase, thymidylat 76.2 0.75 2.6E-05 45.8 1.1 21 49-69 5-25 (213)
302 3cf0_A Transitional endoplasmi 76.2 1.4 4.7E-05 46.0 3.2 20 49-68 48-67 (301)
303 1v43_A Sugar-binding transport 76.2 0.63 2.2E-05 50.5 0.6 23 47-69 34-56 (372)
304 1g29_1 MALK, maltose transport 76.2 0.62 2.1E-05 50.5 0.5 22 48-69 27-48 (372)
305 2yhs_A FTSY, cell division pro 76.0 1.7 5.7E-05 48.9 4.0 22 50-71 293-314 (503)
306 2qz4_A Paraplegin; AAA+, SPG7, 76.0 1.3 4.5E-05 44.5 2.9 21 50-70 39-59 (262)
307 2f1r_A Molybdopterin-guanine d 75.8 0.59 2E-05 44.9 0.2 20 51-70 3-22 (171)
308 1via_A Shikimate kinase; struc 75.6 0.77 2.6E-05 43.5 1.0 16 52-67 6-21 (175)
309 4e22_A Cytidylate kinase; P-lo 75.6 0.88 3E-05 46.2 1.5 22 48-69 25-46 (252)
310 4ag6_A VIRB4 ATPase, type IV s 75.6 1.5 5.2E-05 47.4 3.5 41 49-96 34-74 (392)
311 2o0j_A Terminase, DNA packagin 75.6 5.9 0.0002 43.0 8.1 69 34-107 162-230 (385)
312 3a4m_A L-seryl-tRNA(SEC) kinas 75.5 0.76 2.6E-05 47.0 0.9 20 50-69 4-23 (260)
313 3pvs_A Replication-associated 75.4 1.1 3.8E-05 49.8 2.3 27 42-68 40-68 (447)
314 3tmk_A Thymidylate kinase; pho 75.4 0.98 3.4E-05 45.1 1.7 22 49-70 4-25 (216)
315 4fcw_A Chaperone protein CLPB; 75.2 1 3.6E-05 46.6 1.9 18 51-68 48-65 (311)
316 3hjn_A DTMP kinase, thymidylat 75.2 0.83 2.8E-05 44.8 1.1 17 53-69 3-19 (197)
317 1iqp_A RFCS; clamp loader, ext 75.2 1.5 5.1E-05 45.5 3.2 31 40-70 34-66 (327)
318 1jr3_A DNA polymerase III subu 75.1 1.4 4.7E-05 46.9 2.9 30 41-70 26-58 (373)
319 3tui_C Methionine import ATP-b 75.1 0.7 2.4E-05 50.0 0.6 23 47-69 51-73 (366)
320 3hws_A ATP-dependent CLP prote 75.1 1.5 5E-05 47.0 3.1 25 49-74 50-74 (363)
321 1ls1_A Signal recognition part 75.0 3 0.0001 43.5 5.4 56 50-110 98-153 (295)
322 1hqc_A RUVB; extended AAA-ATPa 75.0 1.4 4.7E-05 46.0 2.8 21 51-71 39-59 (324)
323 2j9r_A Thymidine kinase; TK1, 74.8 1.5 5.2E-05 43.6 2.9 39 50-95 28-66 (214)
324 3pfi_A Holliday junction ATP-d 74.8 1.2 4E-05 47.0 2.2 20 51-70 56-75 (338)
325 3lv8_A DTMP kinase, thymidylat 74.7 1 3.5E-05 45.6 1.7 22 49-70 26-47 (236)
326 2r44_A Uncharacterized protein 74.7 0.99 3.4E-05 47.5 1.6 28 40-67 36-63 (331)
327 1nij_A Hypothetical protein YJ 74.4 1.1 3.8E-05 47.3 1.9 21 51-71 5-25 (318)
328 3d31_A Sulfate/molybdate ABC t 74.3 0.52 1.8E-05 50.7 -0.7 22 48-69 24-45 (348)
329 4hlc_A DTMP kinase, thymidylat 74.2 0.89 3E-05 44.9 1.0 18 51-68 3-20 (205)
330 2grj_A Dephospho-COA kinase; T 74.1 0.77 2.6E-05 44.9 0.5 24 50-74 12-35 (192)
331 2qby_A CDC6 homolog 1, cell di 74.0 1.4 4.6E-05 46.9 2.5 23 50-72 45-67 (386)
332 3qks_A DNA double-strand break 73.7 1 3.4E-05 44.3 1.3 20 50-69 23-42 (203)
333 3eph_A TRNA isopentenyltransfe 73.7 0.99 3.4E-05 49.4 1.3 19 51-69 3-21 (409)
334 1pui_A ENGB, probable GTP-bind 73.7 0.74 2.5E-05 44.6 0.3 21 48-68 24-44 (210)
335 1p5z_B DCK, deoxycytidine kina 73.7 0.94 3.2E-05 46.2 1.1 20 49-68 23-42 (263)
336 1ixz_A ATP-dependent metallopr 73.6 0.94 3.2E-05 45.7 1.1 20 52-71 51-70 (254)
337 1l8q_A Chromosomal replication 73.6 1.5 5.2E-05 46.0 2.7 19 51-69 38-56 (324)
338 1e69_A Chromosome segregation 73.3 1.2 4E-05 47.1 1.7 53 444-498 252-309 (322)
339 3syl_A Protein CBBX; photosynt 73.3 2 6.7E-05 44.5 3.5 17 52-68 69-85 (309)
340 3uk6_A RUVB-like 2; hexameric 73.1 1.6 5.4E-05 46.5 2.8 26 43-68 59-88 (368)
341 2v1u_A Cell division control p 73.0 1.3 4.5E-05 47.1 2.1 23 49-71 43-65 (387)
342 3qf4_B Uncharacterized ABC tra 72.9 0.99 3.4E-05 52.1 1.2 23 47-69 378-400 (598)
343 1ltq_A Polynucleotide kinase; 72.9 1 3.4E-05 46.7 1.1 19 51-69 3-21 (301)
344 3lda_A DNA repair protein RAD5 72.8 1.1 3.7E-05 49.1 1.4 28 47-74 175-202 (400)
345 2ocp_A DGK, deoxyguanosine kin 72.8 1.1 3.6E-05 45.1 1.2 19 51-69 3-21 (241)
346 2fna_A Conserved hypothetical 72.3 1.8 6E-05 45.4 2.8 23 51-73 31-53 (357)
347 1pzn_A RAD51, DNA repair and r 72.2 0.95 3.2E-05 48.6 0.7 28 47-74 128-155 (349)
348 3ake_A Cytidylate kinase; CMP 72.1 1.1 3.8E-05 43.3 1.1 18 52-69 4-21 (208)
349 3e2i_A Thymidine kinase; Zn-bi 72.0 2 6.7E-05 42.9 2.9 41 48-95 26-66 (219)
350 3nwj_A ATSK2; P loop, shikimat 72.0 1.2 4E-05 45.6 1.3 20 50-69 48-67 (250)
351 1ojl_A Transcriptional regulat 71.9 1.3 4.3E-05 46.5 1.6 26 48-74 23-48 (304)
352 2j37_W Signal recognition part 71.9 3.3 0.00011 46.6 5.1 55 52-111 103-157 (504)
353 3d8b_A Fidgetin-like protein 1 71.7 1.7 5.8E-05 46.5 2.6 21 50-70 117-137 (357)
354 1oxx_K GLCV, glucose, ABC tran 71.5 0.54 1.8E-05 50.7 -1.4 23 47-69 28-50 (353)
355 1sq5_A Pantothenate kinase; P- 71.5 1.5 5.2E-05 45.9 2.1 22 48-69 78-99 (308)
356 4a82_A Cystic fibrosis transme 71.5 0.95 3.2E-05 52.0 0.6 22 47-68 364-385 (578)
357 1zu4_A FTSY; GTPase, signal re 71.5 3 0.0001 44.1 4.4 44 51-99 106-149 (320)
358 3k1j_A LON protease, ATP-depen 71.4 1.9 6.5E-05 49.8 3.1 29 40-68 50-78 (604)
359 2ius_A DNA translocase FTSK; n 71.4 2.6 8.8E-05 47.6 4.1 45 48-95 165-209 (512)
360 2xxa_A Signal recognition part 71.4 3.1 0.00011 46.0 4.7 56 51-110 101-156 (433)
361 1sxj_B Activator 1 37 kDa subu 71.4 2.1 7.1E-05 44.3 3.1 31 40-70 30-62 (323)
362 3sop_A Neuronal-specific septi 71.2 1.3 4.3E-05 45.8 1.4 20 52-71 4-23 (270)
363 2f6r_A COA synthase, bifunctio 71.1 1.2 4.1E-05 46.1 1.2 20 51-70 76-95 (281)
364 1uj2_A Uridine-cytidine kinase 71.1 1.2 4E-05 45.1 1.1 17 52-68 24-40 (252)
365 2z43_A DNA repair and recombin 71.1 1.3 4.5E-05 46.8 1.6 28 47-74 104-131 (324)
366 1a7j_A Phosphoribulokinase; tr 70.8 1.4 4.9E-05 45.8 1.7 19 50-68 5-23 (290)
367 3b5x_A Lipid A export ATP-bind 70.7 1.1 3.8E-05 51.5 0.9 23 47-69 366-388 (582)
368 1lkx_A Myosin IE heavy chain; 70.6 2.1 7E-05 50.2 3.1 44 32-75 71-122 (697)
369 2yl4_A ATP-binding cassette SU 70.5 1.2 4E-05 51.4 1.0 23 47-69 367-389 (595)
370 3b60_A Lipid A export ATP-bind 70.4 1.1 3.6E-05 51.6 0.7 23 47-69 366-388 (582)
371 2npi_A Protein CLP1; CLP1-PCF1 70.2 1.2 4E-05 49.8 0.9 26 43-68 131-156 (460)
372 3cr8_A Sulfate adenylyltranfer 70.1 1.5 5.2E-05 50.0 1.8 42 26-67 337-386 (552)
373 1svm_A Large T antigen; AAA+ f 70.1 1.3 4.4E-05 48.1 1.2 25 47-71 166-190 (377)
374 2p5t_B PEZT; postsegregational 69.9 1.1 3.7E-05 45.5 0.5 20 51-70 33-52 (253)
375 3qf4_A ABC transporter, ATP-bi 69.7 1.1 3.8E-05 51.6 0.6 22 47-68 366-387 (587)
376 1sxj_A Activator 1 95 kDa subu 69.6 2.4 8.1E-05 47.9 3.3 22 51-72 78-99 (516)
377 1iy2_A ATP-dependent metallopr 69.6 1.3 4.5E-05 45.4 1.1 19 52-70 75-93 (278)
378 2zr9_A Protein RECA, recombina 69.5 1.5 5.2E-05 47.0 1.6 29 47-75 58-86 (349)
379 3nbx_X ATPase RAVA; AAA+ ATPas 69.5 2.3 8E-05 47.8 3.2 27 40-66 31-57 (500)
380 2r6a_A DNAB helicase, replicat 69.3 1.4 4.8E-05 49.0 1.3 36 40-75 193-228 (454)
381 2yv5_A YJEQ protein; hydrolase 68.7 1.9 6.6E-05 45.1 2.2 30 41-71 157-186 (302)
382 2qag_B Septin-6, protein NEDD5 68.7 1.3 4.6E-05 48.7 0.9 28 43-70 33-62 (427)
383 2dyk_A GTP-binding protein; GT 68.4 1.8 6.3E-05 39.4 1.8 20 53-72 4-23 (161)
384 2orv_A Thymidine kinase; TP4A 68.4 2.7 9.4E-05 42.3 3.1 40 49-95 18-57 (234)
385 1xwi_A SKD1 protein; VPS4B, AA 68.3 2.4 8.3E-05 44.7 2.9 21 51-71 46-66 (322)
386 2hf9_A Probable hydrogenase ni 68.3 3.4 0.00012 40.4 3.8 24 51-74 39-62 (226)
387 3qkt_A DNA double-strand break 68.3 1.4 4.9E-05 46.8 1.1 19 50-68 23-41 (339)
388 1d2n_A N-ethylmaleimide-sensit 68.2 1.5 5E-05 44.8 1.1 20 51-70 65-84 (272)
389 2ce2_X GTPase HRAS; signaling 68.2 1.9 6.6E-05 39.1 1.8 20 53-72 6-25 (166)
390 2i1q_A DNA repair and recombin 68.2 1.5 5E-05 46.2 1.1 27 48-74 96-122 (322)
391 3hr8_A Protein RECA; alpha and 68.0 1.5 5.1E-05 47.2 1.1 28 48-75 59-86 (356)
392 3te6_A Regulatory protein SIR3 67.8 2 6.9E-05 45.4 2.1 23 50-72 45-67 (318)
393 3ld9_A DTMP kinase, thymidylat 67.7 1.5 5.3E-05 43.9 1.1 20 50-69 21-40 (223)
394 2q6t_A DNAB replication FORK h 67.5 2.4 8.1E-05 46.9 2.7 37 40-76 190-226 (444)
395 1v5w_A DMC1, meiotic recombina 67.3 1.6 5.4E-05 46.6 1.2 29 47-75 119-147 (343)
396 3r20_A Cytidylate kinase; stru 67.3 1.8 6E-05 43.8 1.4 21 49-69 8-28 (233)
397 3pqc_A Probable GTP-binding pr 67.3 2.1 7E-05 40.5 1.9 21 52-72 25-45 (195)
398 2r2a_A Uncharacterized protein 67.2 2.3 8E-05 41.7 2.3 23 52-74 7-29 (199)
399 3t1o_A Gliding protein MGLA; G 67.0 2.1 7.3E-05 40.4 1.9 21 53-74 17-37 (198)
400 2wsm_A Hydrogenase expression/ 67.0 2.4 8.2E-05 41.3 2.4 26 49-74 29-54 (221)
401 1yqt_A RNAse L inhibitor; ATP- 66.9 1.4 4.8E-05 50.2 0.7 23 47-69 44-66 (538)
402 2chq_A Replication factor C sm 66.8 1.7 5.8E-05 44.9 1.3 19 52-70 40-58 (319)
403 2r62_A Cell division protease 66.7 1.4 4.9E-05 44.6 0.7 18 51-68 45-62 (268)
404 1z2a_A RAS-related protein RAB 66.7 2.1 7.1E-05 39.2 1.7 20 53-72 8-27 (168)
405 2x8a_A Nuclear valosin-contain 66.5 1.6 5.5E-05 45.0 1.0 21 51-71 45-65 (274)
406 3eie_A Vacuolar protein sortin 66.4 2.5 8.4E-05 44.5 2.4 20 51-70 52-71 (322)
407 3t15_A Ribulose bisphosphate c 66.3 3.2 0.00011 43.1 3.2 17 51-67 37-53 (293)
408 2rcn_A Probable GTPase ENGC; Y 66.2 2.4 8.4E-05 45.6 2.4 28 42-70 208-235 (358)
409 1w4r_A Thymidine kinase; type 66.1 3 0.0001 40.8 2.8 38 50-94 20-57 (195)
410 1w7j_A Myosin VA; motor protei 65.9 2.9 0.0001 49.7 3.1 45 31-75 132-184 (795)
411 4a1f_A DNAB helicase, replicat 65.9 1.8 6.3E-05 46.1 1.3 40 37-76 33-72 (338)
412 4anj_A Unconventional myosin-V 65.7 2.9 9.9E-05 51.2 3.1 44 31-74 120-171 (1052)
413 2qp9_X Vacuolar protein sortin 65.6 2.4 8.2E-05 45.4 2.2 21 51-71 85-105 (355)
414 1ky3_A GTP-binding protein YPT 65.4 2.3 7.8E-05 39.5 1.8 22 52-73 10-31 (182)
415 3pxg_A Negative regulator of g 65.3 2.8 9.5E-05 46.7 2.7 26 43-68 192-219 (468)
416 1lw7_A Transcriptional regulat 65.2 1.4 4.9E-05 47.3 0.3 28 43-70 161-190 (365)
417 2iut_A DNA translocase FTSK; n 65.2 4.2 0.00014 46.4 4.1 44 49-95 213-256 (574)
418 2ged_A SR-beta, signal recogni 65.2 2.3 7.9E-05 40.3 1.8 21 52-72 50-70 (193)
419 4f4c_A Multidrug resistance pr 65.2 1.8 6.2E-05 54.7 1.3 22 47-68 1102-1123(1321)
420 1svi_A GTP-binding protein YSX 65.1 2.4 8.2E-05 40.2 1.9 21 51-71 24-44 (195)
421 1q3t_A Cytidylate kinase; nucl 65.1 2.1 7.2E-05 42.7 1.5 20 50-69 16-35 (236)
422 4aby_A DNA repair protein RECN 65.1 0.7 2.4E-05 50.4 -2.3 18 52-69 62-79 (415)
423 1u8z_A RAS-related protein RAL 65.1 2.4 8E-05 38.7 1.7 21 53-73 7-27 (168)
424 1u0l_A Probable GTPase ENGC; p 65.0 2.6 9.1E-05 43.9 2.3 28 41-69 161-188 (301)
425 4db1_A Myosin-7; S1DC, cardiac 64.9 3.3 0.00011 49.1 3.3 44 31-74 147-198 (783)
426 1ek0_A Protein (GTP-binding pr 64.8 2.4 8.2E-05 38.8 1.7 21 53-73 6-26 (170)
427 2vhj_A Ntpase P4, P4; non- hyd 64.6 2.5 8.5E-05 44.9 2.0 25 49-73 122-146 (331)
428 1g16_A RAS-related protein SEC 64.5 2.5 8.6E-05 38.8 1.8 20 53-72 6-25 (170)
429 3u61_B DNA polymerase accessor 64.3 3.3 0.00011 43.2 3.0 31 40-70 35-68 (324)
430 1kao_A RAP2A; GTP-binding prot 64.1 2.5 8.6E-05 38.5 1.8 20 53-72 6-25 (167)
431 1oix_A RAS-related protein RAB 64.1 2.5 8.7E-05 40.4 1.8 21 52-72 31-51 (191)
432 2zpa_A Uncharacterized protein 64.1 4.1 0.00014 47.4 3.9 58 38-105 178-237 (671)
433 1z0j_A RAB-22, RAS-related pro 64.0 2.5 8.6E-05 38.7 1.8 21 53-73 9-29 (170)
434 3vfd_A Spastin; ATPase, microt 64.0 2.8 9.5E-05 45.3 2.3 21 50-70 148-168 (389)
435 1u94_A RECA protein, recombina 64.0 2.2 7.5E-05 45.9 1.5 29 47-75 60-88 (356)
436 2erx_A GTP-binding protein DI- 64.0 2.5 8.6E-05 38.8 1.8 19 53-71 6-24 (172)
437 2v3c_C SRP54, signal recogniti 63.9 1.5 5.1E-05 48.5 0.1 46 51-101 100-145 (432)
438 1q57_A DNA primase/helicase; d 63.7 4.7 0.00016 45.2 4.2 44 33-76 223-268 (503)
439 1c1y_A RAS-related protein RAP 63.7 2.6 8.9E-05 38.5 1.7 20 53-72 6-25 (167)
440 1tf7_A KAIC; homohexamer, hexa 63.6 4.7 0.00016 45.6 4.2 29 46-74 277-305 (525)
441 1um8_A ATP-dependent CLP prote 63.6 3.6 0.00012 44.1 3.1 18 50-67 72-89 (376)
442 2f9l_A RAB11B, member RAS onco 63.5 2.5 8.7E-05 40.5 1.7 21 52-72 7-27 (199)
443 3bgw_A DNAB-like replicative h 63.5 2.2 7.5E-05 47.3 1.4 37 40-76 187-223 (444)
444 3ux8_A Excinuclease ABC, A sub 63.4 1.7 5.8E-05 50.9 0.5 20 48-67 346-365 (670)
445 2wji_A Ferrous iron transport 63.2 2.7 9.1E-05 39.0 1.7 20 52-71 5-24 (165)
446 3q85_A GTP-binding protein REM 63.1 2.7 9.2E-05 38.7 1.7 19 53-71 5-23 (169)
447 2cxx_A Probable GTP-binding pr 63.1 2.8 9.5E-05 39.4 1.9 20 53-72 4-23 (190)
448 1z08_A RAS-related protein RAB 63.1 2.7 9.2E-05 38.6 1.7 20 53-72 9-28 (170)
449 2h92_A Cytidylate kinase; ross 62.8 2.2 7.6E-05 41.7 1.2 19 50-68 3-21 (219)
450 2y8e_A RAB-protein 6, GH09086P 62.7 2.8 9.7E-05 38.8 1.8 21 53-73 17-37 (179)
451 1w5s_A Origin recognition comp 62.5 3.1 0.00011 44.7 2.3 23 50-72 50-74 (412)
452 2qm8_A GTPase/ATPase; G protei 62.5 2 6.9E-05 45.7 0.8 31 41-71 42-76 (337)
453 3euj_A Chromosome partition pr 62.4 1.9 6.3E-05 48.4 0.5 20 51-70 30-49 (483)
454 1wms_A RAB-9, RAB9, RAS-relate 62.4 2.8 9.6E-05 38.9 1.8 20 53-72 10-29 (177)
455 1g8x_A Myosin II heavy chain f 62.2 3.8 0.00013 50.1 3.2 45 31-75 148-200 (1010)
456 3ozx_A RNAse L inhibitor; ATP 62.2 1.9 6.4E-05 49.2 0.5 22 48-69 292-313 (538)
457 1g8p_A Magnesium-chelatase 38 62.1 3.3 0.00011 43.4 2.5 17 51-67 46-62 (350)
458 1kk8_A Myosin heavy chain, str 62.1 3.4 0.00012 49.4 2.8 45 31-75 145-197 (837)
459 2zej_A Dardarin, leucine-rich 61.9 2.4 8.2E-05 40.1 1.2 19 53-71 5-23 (184)
460 2zan_A Vacuolar protein sortin 61.8 3.8 0.00013 45.3 2.9 20 51-70 168-187 (444)
461 1r2q_A RAS-related protein RAB 61.7 3 0.0001 38.2 1.7 20 53-72 9-28 (170)
462 3j16_B RLI1P; ribosome recycli 61.6 2 6.9E-05 49.6 0.7 23 47-69 100-122 (608)
463 2z4s_A Chromosomal replication 61.6 3.7 0.00013 45.3 2.8 18 51-68 131-148 (440)
464 2fn4_A P23, RAS-related protei 61.6 3.1 0.0001 38.6 1.8 22 52-73 11-32 (181)
465 2lkc_A Translation initiation 61.5 2.9 0.0001 38.8 1.7 23 50-72 8-30 (178)
466 2gj8_A MNME, tRNA modification 61.3 3.1 0.00011 39.0 1.8 20 52-71 6-25 (172)
467 3bk7_A ABC transporter ATP-bin 61.2 2.1 7.1E-05 49.5 0.7 24 46-69 113-136 (607)
468 2wjg_A FEOB, ferrous iron tran 61.2 3 0.0001 39.2 1.7 20 52-71 9-28 (188)
469 2nzj_A GTP-binding protein REM 61.1 3.1 0.0001 38.4 1.8 19 53-71 7-25 (175)
470 2ycu_A Non muscle myosin 2C, a 61.1 4 0.00014 49.9 3.2 45 31-75 122-174 (995)
471 3io5_A Recombination and repai 61.0 3.6 0.00012 43.6 2.4 24 52-75 30-53 (333)
472 1z0f_A RAB14, member RAS oncog 61.0 3.1 0.00011 38.5 1.7 22 52-73 17-38 (179)
473 3zvl_A Bifunctional polynucleo 60.9 2.6 9E-05 46.2 1.4 21 50-70 258-278 (416)
474 3kkq_A RAS-related protein M-R 60.6 3.1 0.00011 38.9 1.7 20 53-72 21-40 (183)
475 2efe_B Small GTP-binding prote 60.3 3.2 0.00011 38.6 1.7 20 53-72 15-34 (181)
476 3con_A GTPase NRAS; structural 60.3 3.2 0.00011 39.2 1.7 20 53-72 24-43 (190)
477 3ux8_A Excinuclease ABC, A sub 60.1 2.1 7.2E-05 50.0 0.5 20 48-67 42-61 (670)
478 1nrj_B SR-beta, signal recogni 60.0 3.2 0.00011 40.3 1.7 23 51-73 13-35 (218)
479 1moz_A ARL1, ADP-ribosylation 59.9 2.6 8.9E-05 39.4 1.0 19 52-70 20-38 (183)
480 2bme_A RAB4A, RAS-related prot 59.9 3.4 0.00012 38.7 1.8 22 52-73 12-33 (186)
481 1sxj_E Activator 1 40 kDa subu 59.8 2.6 8.8E-05 44.5 1.1 16 53-68 39-54 (354)
482 3p32_A Probable GTPase RV1496/ 59.8 8.9 0.00031 40.8 5.4 33 41-73 66-102 (355)
483 1w1w_A Structural maintenance 59.3 3 0.0001 45.8 1.5 22 49-70 25-46 (430)
484 1r8s_A ADP-ribosylation factor 59.2 3.5 0.00012 37.7 1.7 21 53-73 3-23 (164)
485 2a9k_A RAS-related protein RAL 59.2 3.4 0.00012 38.5 1.7 21 53-73 21-41 (187)
486 1upt_A ARL1, ADP-ribosylation 59.2 3.5 0.00012 37.9 1.7 21 52-72 9-29 (171)
487 2bov_A RAla, RAS-related prote 58.7 3.5 0.00012 39.3 1.7 21 53-73 17-37 (206)
488 4gzl_A RAS-related C3 botulinu 58.7 2.9 0.0001 40.4 1.2 21 52-72 32-52 (204)
489 2dfs_A Myosin-5A; myosin-V, in 58.7 4.6 0.00016 49.8 3.1 43 32-74 133-183 (1080)
490 3t5g_A GTP-binding protein RHE 58.5 3.7 0.00013 38.3 1.8 21 52-72 8-28 (181)
491 3tw8_B RAS-related protein RAB 58.4 2.8 9.6E-05 38.9 1.0 19 53-71 12-30 (181)
492 3bwd_D RAC-like GTP-binding pr 58.3 3.6 0.00012 38.3 1.7 21 52-72 10-30 (182)
493 1a5t_A Delta prime, HOLB; zinc 58.3 5 0.00017 42.3 3.0 28 42-69 13-43 (334)
494 3bc1_A RAS-related protein RAB 58.3 3.6 0.00012 38.5 1.7 21 52-72 13-33 (195)
495 1yqt_A RNAse L inhibitor; ATP- 58.3 2.4 8.2E-05 48.2 0.5 22 48-69 310-331 (538)
496 2c9o_A RUVB-like 1; hexameric 58.3 4.7 0.00016 44.7 2.9 26 43-68 52-81 (456)
497 1w9i_A Myosin II heavy chain; 58.2 4.7 0.00016 47.7 3.0 45 31-75 148-200 (770)
498 3q72_A GTP-binding protein RAD 58.0 3.6 0.00012 37.6 1.7 18 53-70 5-22 (166)
499 3ozx_A RNAse L inhibitor; ATP 58.0 2.6 9.1E-05 47.9 0.8 22 48-69 23-44 (538)
500 3tkl_A RAS-related protein RAB 57.9 3.7 0.00013 38.8 1.7 20 53-72 19-38 (196)
No 1
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=100.00 E-value=3.8e-90 Score=827.35 Aligned_cols=525 Identities=36% Similarity=0.585 Sum_probs=467.6
Q ss_pred hhHHHhhhcCCCchhhHHHHHHHHHcCCeEEEEecCCCCccccHHHHHHHhccCCCCCCCCCceEEEecccHHHHHHHHH
Q 038192 24 PNEVENNRKDLPIVMMEQEIMEAVNDNSAVIICGETGCGKTTQVPQFLFEAGFGSNRCSSRSGRIGVTQPRRVAVLATAK 103 (764)
Q Consensus 24 ~~~~~~~R~~LPi~~~~~~Il~~l~~~~vviI~GeTGSGKTTqvPq~Lle~~~~~~~~~~~~~~Ii~tQPRRiaAisvA~ 103 (764)
..++.+.|..||++.++++|+.++.++++++|+|+|||||||++|+++++..+..+. ..+|+|++|||++|.++++
T Consensus 83 ~~~~l~~r~~lP~~~q~~~i~~~l~~~~~vii~gpTGSGKTtllp~ll~~~~~~~~~----g~~ilvl~P~r~La~q~~~ 158 (773)
T 2xau_A 83 YVDILKIRRELPVHAQRDEFLKLYQNNQIMVFVGETGSGKTTQIPQFVLFDEMPHLE----NTQVACTQPRRVAAMSVAQ 158 (773)
T ss_dssp HHHHHHHHTTSGGGGGHHHHHHHHHHCSEEEEECCTTSSHHHHHHHHHHHHHCGGGG----TCEEEEEESCHHHHHHHHH
T ss_pred HHHHHHHhhcCChHHHHHHHHHHHhCCCeEEEECCCCCCHHHHHHHHHHHhccccCC----CceEEecCchHHHHHHHHH
Confidence 467788889999999999999999999999999999999999999999987654321 1579999999999999999
Q ss_pred HHHHHhCCCCCCEeeEEeccCcccCCCceEEEEchHHHHHHHHH----------HHHHHHH-HHh----hccccCCccCC
Q 038192 104 RVAFELGLHLGKEVGFQVRHDKKIGDSCSIKFMTDGILLRELKA----------LYEKQQQ-LLR----SGQCIEPKDRV 168 (764)
Q Consensus 104 RVa~E~g~~lG~~VGY~ir~e~~~s~~t~I~f~T~GiLLr~l~~----------i~de~~~-~l~----~~~~~~~~~~~ 168 (764)
+++++++..+|..|||++++++..+.+++|+|+|+|+|++.+.. |+||+|. ++. .+++..+...+
T Consensus 159 ~l~~~~~~~v~~~vG~~i~~~~~~~~~~~I~v~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~~ 238 (773)
T 2xau_A 159 RVAEEMDVKLGEEVGYSIRFENKTSNKTILKYMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQVVKRR 238 (773)
T ss_dssp HHHHHTTCCBTTTEEEEETTEEECCTTCSEEEEEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHHC
T ss_pred HHHHHhCCchhheecceeccccccCCCCCEEEECHHHHHHHHhhCccccCCCEEEecCccccccchHHHHHHHHHHHHhC
Confidence 99999999999999999999999889999999999999998854 5688884 444 23333333445
Q ss_pred CCceEEEeecccchhhhccccCCCCCCCeeeeCCcccceeEEecCCCchhhHHHHHHHHHHHHhhcCCCCCeEEecCCHH
Q 038192 169 FPLKLILMSATLRVEDFISGGRLFRNPPIIEVPTRQFPVTVHFSKRTEIVDYIGQAYKKVMSIHKRLPQGGILVFVTGQR 248 (764)
Q Consensus 169 ~~lKlILMSATl~~~~f~~~~~~f~~~~vi~i~gr~~pV~~~y~~~~~~~d~l~~~~~~v~~i~~~~~~g~ilvF~~g~~ 248 (764)
+++++|+||||++.+.|. +||++++++.++|+.|||+++|..... .+++......+.+++...++|++|||++++.
T Consensus 239 ~~~~iIl~SAT~~~~~l~---~~~~~~~vi~v~gr~~pv~~~~~~~~~-~~~~~~~l~~l~~~~~~~~~g~iLVF~~~~~ 314 (773)
T 2xau_A 239 PDLKIIIMSATLDAEKFQ---RYFNDAPLLAVPGRTYPVELYYTPEFQ-RDYLDSAIRTVLQIHATEEAGDILLFLTGED 314 (773)
T ss_dssp TTCEEEEEESCSCCHHHH---HHTTSCCEEECCCCCCCEEEECCSSCC-SCHHHHHHHHHHHHHHHSCSCEEEEECSCHH
T ss_pred CCceEEEEeccccHHHHH---HHhcCCCcccccCcccceEEEEecCCc-hhHHHHHHHHHHHHHHhcCCCCEEEECCCHH
Confidence 789999999999999998 699999999999999999999987765 7888888888888888878999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhhccccccCCccccCCCCCccccchhHHhHHHHHhhcCcccccccccCCCCCcccccCccccc
Q 038192 249 EVEYLCSKLRKASKQLLVNSSKENKGNQVVADSEPNATKDINMKEINEAFEIQGYSTEQQTDRFSSYDEDQFDIDDNELD 328 (764)
Q Consensus 249 ~ie~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~ 328 (764)
+++.++..|.+......
T Consensus 315 ~i~~l~~~L~~~~~~l~--------------------------------------------------------------- 331 (773)
T 2xau_A 315 EIEDAVRKISLEGDQLV--------------------------------------------------------------- 331 (773)
T ss_dssp HHHHHHHHHHHHHHHHH---------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHhhc---------------------------------------------------------------
Confidence 99999988865221100
Q ss_pred cccCccchhhhhhccchhhhhhhcCCCCCCCCcccccccchhhhhHHHHHHhhcCCCCCCCccccCCCCCCCCcCCCCCC
Q 038192 329 ALSDSETESETEILGEDEKLVEQKCPMDGDDPVDVLKENWSLGSLKLAFEVLSGKNASGPSSQMKLSTPAIPEQCTELPP 408 (764)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilvfl~g~~~i~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 408 (764)
...
T Consensus 332 -------------------------------------------------~~~---------------------------- 334 (773)
T 2xau_A 332 -------------------------------------------------REE---------------------------- 334 (773)
T ss_dssp -------------------------------------------------HHH----------------------------
T ss_pred -------------------------------------------------ccc----------------------------
Confidence 000
Q ss_pred CCCCCCCCCCCCCccccccCcccCCCCCeEEEecCCCCCHHHHHhhhccCC-----CCceEEEEecCcccccCCCCCeEE
Q 038192 409 TPTPEQCPELSSPDVEKMGDNKRAGVGALCVLPLYAMLPAAAQLRVFEDVK-----EGERLVVVSTNVAETSLTIPGIKY 483 (764)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~pLHs~l~~~eQ~~vf~~~~-----~g~rKVIlsTNIAEtSITIpdV~~ 483 (764)
...++.+.++||+|++++|.++|+.++ +|.+||||||||||+|||||+|+|
T Consensus 335 ------------------------~~~~~~v~~lhg~l~~~eR~~v~~~f~~~~~~~g~~kVlVAT~iae~GidIp~v~~ 390 (773)
T 2xau_A 335 ------------------------GCGPLSVYPLYGSLPPHQQQRIFEPAPESHNGRPGRKVVISTNIAETSLTIDGIVY 390 (773)
T ss_dssp ------------------------CCCCEEEEEECTTCCHHHHGGGGSCCCCCSSSSCCEEEEEECTHHHHTCCCTTEEE
T ss_pred ------------------------cCCCeEEEEeCCCCCHHHHHHHHhhcccccCCCCceEEEEeCcHHHhCcCcCCeEE
Confidence 113578999999999999999999999 999999999999999999999999
Q ss_pred EEeCCcccceeeccCCCccccceeeccHHhHHHhccccCCCCCCEEEEccCHHHhcccCCCCCCCcccccChhhHHHHHH
Q 038192 484 VVDTGREKVKKYNSANGIESYEIQWISKASAAQRAGRAGRTAPGHCYRLYSSAVFNNILPDFSCAEISKVPVDGVVLLMK 563 (764)
Q Consensus 484 VID~G~~K~~~yd~~~~~~~l~~~~iSkasa~QR~GRAGR~~~G~cyrLys~~~~~~~l~~~~~PEI~r~~L~~~~L~lk 563 (764)
|||+|++|++.||+.++++.|.+.|+|+++|.||+|||||.++|.||+||++..|...|++++.|||+|.+|++++|++|
T Consensus 391 VId~g~~k~~~yd~~~g~~~L~~~p~S~~s~~QR~GRaGR~~~G~~~~l~~~~~~~~~l~~~~~pEi~r~~L~~~~L~l~ 470 (773)
T 2xau_A 391 VVDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTRPGKCFRLYTEEAFQKELIEQSYPEILRSNLSSTVLELK 470 (773)
T ss_dssp EEECSEEEEEEEETTTTEEEEEEEECCHHHHHHHHHGGGSSSSEEEEESSCHHHHHHTSCSSCCCGGGGSCCHHHHHHHH
T ss_pred EEeCCCccceeeccccCccccccccCCHHHHHhhccccCCCCCCEEEEEecHHHhcccccccCCCccccCcHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999996568999999999999999999999
Q ss_pred HcCCCCCCCCCCCCCCCHHHHHHHHHHHHHcccccCCCCccHHHHHHhcCCCChHHHHHHHHHHhhhhhhhhhhhccchh
Q 038192 564 SMNIDKVSNFPFPTPPEVTALVEAERCLKALEALDSNGRLTALGKAMAHYPMSPRHSRMLLTLIQTMKVKSYARANLVLG 643 (764)
Q Consensus 564 ~l~~~~~~~f~~~~pP~~~~i~~ai~~L~~lgAld~~~~LT~LG~~la~LPvdp~lgkmLl~~~~~~~~~~~~~~~~~l~ 643 (764)
.+|++++..|+|++||+.+++..|++.|..+||||.+|+||++|+.|+.||+||++||||+.|..+ .|+.
T Consensus 471 ~~gi~~~~~f~~~~~p~~~~i~~a~~~L~~lgald~~~~lT~lG~~~a~~pl~p~~~~~l~~~~~~----------~c~~ 540 (773)
T 2xau_A 471 KLGIDDLVHFDFMDPPAPETMMRALEELNYLACLDDEGNLTPLGRLASQFPLDPMLAVMLIGSFEF----------QCSQ 540 (773)
T ss_dssp HTTCCCGGGCCCSSCCCHHHHHHHHHHHHHTTSBCTTSCBCHHHHHHTTSSSCHHHHHHHHHGGGG----------TCHH
T ss_pred HcCCCChhhccccCCCcHHHHHHHHHHHHHcCCcccCCCcChhhhhhccccCCHHHHHHHHhhccc----------Cchh
Confidence 999999999999999999999999999999999999999999999999999999999999988542 5888
Q ss_pred hhHHhhhcccCCcceeeccccccCCCCCchhhhhcccCCCCChhhHHHHhhhhhHHHHHHHHHhhcCCCCCcHHHHHHHH
Q 038192 644 YGVAAAAALSVSNPFVLQLEGTQTNSNDSELEERDNALDSEDPMCRQEKLGKRKLKEVAKLSHAKFSNPTSDVLTVAYAL 723 (764)
Q Consensus 644 ~~~~iaA~ls~~~~F~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~f~~~~sD~lt~ln~~ 723 (764)
++++|||+||+++||+.|.+. +++++.++++|.++.|||++++|+|
T Consensus 541 ~~l~i~a~ls~~~~f~~~~~~----------------------------------~~~~~~~~~~f~~~~~D~~~~l~~~ 586 (773)
T 2xau_A 541 EILTIVAMLSVPNVFIRPTKD----------------------------------KKRADDAKNIFAHPDGDHITLLNVY 586 (773)
T ss_dssp HHHHHHHHHTSCCCBCCCTTC----------------------------------HHHHHHHHHTTCCTTBHHHHHHHHH
T ss_pred HHHHHHHhcccCCcccCChHH----------------------------------HHHHHHHHHhccCCCCcHHHHHHHH
Confidence 999999999999999987432 1456778899999999999999999
Q ss_pred HHHHhcC---Cc-HHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcC
Q 038192 724 QCFELSK---SP-VEFCNEYALHLKTMEEMSKLRKQLLHLLFNQN 764 (764)
Q Consensus 724 ~~~~~~~---~~-~~~C~~~~l~~~~l~~i~~ir~QL~~~l~~~g 764 (764)
++|.... .. .+||++||||+++|+++.++|.||.++|.+.|
T Consensus 587 ~~~~~~~~~~~~~~~~c~~~~l~~~~l~~~~~~~~ql~~~~~~~~ 631 (773)
T 2xau_A 587 HAFKSDEAYEYGIHKWCRDHYLNYRSLSAADNIRSQLERLMNRYN 631 (773)
T ss_dssp HHHTSHHHHHHCHHHHHHHTTBCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHhccccchHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhcC
Confidence 9996543 33 78999999999999999999999999998654
No 2
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=100.00 E-value=2.9e-51 Score=490.01 Aligned_cols=540 Identities=15% Similarity=0.115 Sum_probs=353.9
Q ss_pred hHHHhhhcCC---CchhhHHHHHHH-HHcCCeEEEEecCCCCccccHHHHHHHhccCCCCCCCCCceEEEecccHHHHHH
Q 038192 25 NEVENNRKDL---PIVMMEQEIMEA-VNDNSAVIICGETGCGKTTQVPQFLFEAGFGSNRCSSRSGRIGVTQPRRVAVLA 100 (764)
Q Consensus 25 ~~~~~~R~~L---Pi~~~~~~Il~~-l~~~~vviI~GeTGSGKTTqvPq~Lle~~~~~~~~~~~~~~Ii~tQPRRiaAis 100 (764)
+.+.+.-++. ..+.+|.++++. +.++++++|+|+||||||+++++++++.....+ ++|+|++|||.+|.+
T Consensus 17 ~~~~~~l~~~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~~------~~il~i~P~r~La~q 90 (715)
T 2va8_A 17 SNVIEIIKKRGIKKLNPPQTEAVKKGLLEGNRLLLTSPTGSGKTLIAEMGIISFLLKNG------GKAIYVTPLRALTNE 90 (715)
T ss_dssp HHHHHHHHTTSCCBCCHHHHHHHHTTTTTTCCEEEECCTTSCHHHHHHHHHHHHHHHSC------SEEEEECSCHHHHHH
T ss_pred HHHHHHHHhCCCCCCCHHHHHHHHHHhcCCCcEEEEcCCCCcHHHHHHHHHHHHHHHCC------CeEEEEeCcHHHHHH
Confidence 3444443333 347788888888 888999999999999999999999998654222 599999999999999
Q ss_pred HHHHH--HHHhCCCCCCEeeEEeccCcccCCCceEEEEchHHHHHHHHH-----------HHHHHHHHHhhcc---ccCC
Q 038192 101 TAKRV--AFELGLHLGKEVGFQVRHDKKIGDSCSIKFMTDGILLRELKA-----------LYEKQQQLLRSGQ---CIEP 164 (764)
Q Consensus 101 vA~RV--a~E~g~~lG~~VGY~ir~e~~~s~~t~I~f~T~GiLLr~l~~-----------i~de~~~~l~~~~---~~~~ 164 (764)
+++++ ..++|..+|..+||..+.+...+ +++|+|||+|+|++.+.. |+||+|.....++ +..+
T Consensus 91 ~~~~~~~~~~~g~~v~~~~G~~~~~~~~~~-~~~Iiv~Tpe~l~~~~~~~~~~l~~~~~vIiDE~H~l~~~~~~~~l~~i 169 (715)
T 2va8_A 91 KYLTFKDWELIGFKVAMTSGDYDTDDAWLK-NYDIIITTYEKLDSLWRHRPEWLNEVNYFVLDELHYLNDPERGPVVESV 169 (715)
T ss_dssp HHHHHGGGGGGTCCEEECCSCSSSCCGGGG-GCSEEEECHHHHHHHHHHCCGGGGGEEEEEECSGGGGGCTTTHHHHHHH
T ss_pred HHHHHHHhhcCCCEEEEEeCCCCCchhhcC-CCCEEEEcHHHHHHHHhCChhHhhccCEEEEechhhcCCcccchHHHHH
Confidence 99998 33456677777777777665443 789999999999998854 5688887432121 1111
Q ss_pred ccCCCCceEEEeecccc-hhhhccccCCCCCCCeeeeCCcccceeEEecCCC------c--h-----hhH--HHHHHHHH
Q 038192 165 KDRVFPLKLILMSATLR-VEDFISGGRLFRNPPIIEVPTRQFPVTVHFSKRT------E--I-----VDY--IGQAYKKV 228 (764)
Q Consensus 165 ~~~~~~lKlILMSATl~-~~~f~~~~~~f~~~~vi~i~gr~~pV~~~y~~~~------~--~-----~d~--l~~~~~~v 228 (764)
..+.+++|+|+||||++ .+.|. +||+ ++++..++|.+|++.++.... . . ..+ .......+
T Consensus 170 ~~~~~~~~ii~lSATl~n~~~~~---~~l~-~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (715)
T 2va8_A 170 TIRAKRRNLLALSATISNYKQIA---KWLG-AEPVATNWRPVPLIEGVIYPERKKKEYNVIFKDNTTKKVHGDDAIIAYT 245 (715)
T ss_dssp HHHHHTSEEEEEESCCTTHHHHH---HHHT-CEEEECCCCSSCEEEEEEEECSSTTEEEEEETTSCEEEEESSSHHHHHH
T ss_pred HHhcccCcEEEEcCCCCCHHHHH---HHhC-CCccCCCCCCCCceEEEEecCCcccceeeecCcchhhhcccchHHHHHH
Confidence 12234899999999994 88888 5775 677888999999875542111 0 0 000 01223334
Q ss_pred HHHhhcCCCCCeEEecCCHHHHHHHHHHHHHHHHHhhhhccccccCCccccCCCCCccccchhHHhHHHHHhhcCccccc
Q 038192 229 MSIHKRLPQGGILVFVTGQREVEYLCSKLRKASKQLLVNSSKENKGNQVVADSEPNATKDINMKEINEAFEIQGYSTEQQ 308 (764)
Q Consensus 229 ~~i~~~~~~g~ilvF~~g~~~ie~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q 308 (764)
.+.+. +.+++|||++++++++.++..|.+.... ...+..+..+......
T Consensus 246 ~~~~~--~~~~~LVF~~s~~~~~~~a~~L~~~~~~-----------------------~~~~~~~~~~~~~~~~------ 294 (715)
T 2va8_A 246 LDSLS--KNGQVLVFRNSRKMAESTALKIANYMNF-----------------------VSLDENALSEILKQLD------ 294 (715)
T ss_dssp HHHHT--TTCCEEEECSSHHHHHHHHHHHHHTTTS-----------------------SCCCHHHHHHHHHHHH------
T ss_pred HHHHh--cCCCEEEEECCHHHHHHHHHHHHHHHhh-----------------------ccCChHHHHHHHHHHH------
Confidence 44442 5689999999999999999988752100 0000000000000000
Q ss_pred ccccCCCCCcccccCccccccccCccchhhhhhccchhhhhhhcCCCCCCCCcccccccchhhhhHHHHHHhhcCCCCCC
Q 038192 309 TDRFSSYDEDQFDIDDNELDALSDSETESETEILGEDEKLVEQKCPMDGDDPVDVLKENWSLGSLKLAFEVLSGKNASGP 388 (764)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilvfl~g~~~i~~l~~~~~~l~~~~~~~~ 388 (764)
.+ . .+. ......+..+
T Consensus 295 --~i---~------------------------------------------------~~~---~~~~~~l~~~-------- 310 (715)
T 2va8_A 295 --DI---E------------------------------------------------EGG---SDEKELLKSL-------- 310 (715)
T ss_dssp --TC---C------------------------------------------------SSC---HHHHHHHHHH--------
T ss_pred --Hh---h------------------------------------------------hcc---ccccHHHHHH--------
Confidence 00 0 000 0000000000
Q ss_pred CccccCCCCCCCCcCCCCCCCCCCCCCCCCCCCccccccCcccCCCCCeEEEecCCCCCHHHHHhhhccCCCCceEEEEe
Q 038192 389 SSQMKLSTPAIPEQCTELPPTPTPEQCPELSSPDVEKMGDNKRAGVGALCVLPLYAMLPAAAQLRVFEDVKEGERLVVVS 468 (764)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~pLHs~l~~~eQ~~vf~~~~~g~rKVIls 468 (764)
-...+.++||+|+.++|.++++.|++|.+|||+|
T Consensus 311 ----------------------------------------------~~~~v~~~h~~l~~~~r~~v~~~f~~g~~~vlva 344 (715)
T 2va8_A 311 ----------------------------------------------ISKGVAYHHAGLSKALRDLIEEGFRQRKIKVIVA 344 (715)
T ss_dssp ----------------------------------------------HTTTEEEECTTSCHHHHHHHHHHHHTTCSCEEEE
T ss_pred ----------------------------------------------HhcCEEEECCCCCHHHHHHHHHHHHcCCCeEEEE
Confidence 0134888999999999999999999999999999
Q ss_pred cCcccccCCCCCeEEEEeCCcccceeeccCCCccccceeeccHHhHHHhccccCCCC---CCEEEEccCHHH-hcccCC-
Q 038192 469 TNVAETSLTIPGIKYVVDTGREKVKKYNSANGIESYEIQWISKASAAQRAGRAGRTA---PGHCYRLYSSAV-FNNILP- 543 (764)
Q Consensus 469 TNIAEtSITIpdV~~VID~G~~K~~~yd~~~~~~~l~~~~iSkasa~QR~GRAGR~~---~G~cyrLys~~~-~~~~l~- 543 (764)
||++|+|||||++++|||+ ...||+.++.. ..|+|++++.||+|||||.+ +|.||+||++.. +...+.
T Consensus 345 T~~l~~Gidip~~~~VI~~----~~~~d~~~~~~---~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~~~~~~~~~~~~~ 417 (715)
T 2va8_A 345 TPTLAAGVNLPARTVIIGD----IYRFNKKIAGY---YDEIPIMEYKQMSGRAGRPGFDQIGESIVVVRDKEDVDRVFKK 417 (715)
T ss_dssp CGGGGGSSCCCBSEEEECC----C-----------------CHHHHHHHHTTBCCTTTCSCEEEEEECSCGGGHHHHHHH
T ss_pred ChHHhcccCCCceEEEEeC----CeeccccCCCC---CCcCCHHHHHHHhhhcCCCCCCCCceEEEEeCCchHHHHHHHH
Confidence 9999999999999999997 45788766543 68999999999999999999 899999998765 221111
Q ss_pred -CCCCCcccccChhh------HHHHHHHcCCC----CCCCC---CCCC-CCCHHHHHHHHHHHHHcccccCCC---CccH
Q 038192 544 -DFSCAEISKVPVDG------VVLLMKSMNID----KVSNF---PFPT-PPEVTALVEAERCLKALEALDSNG---RLTA 605 (764)
Q Consensus 544 -~~~~PEI~r~~L~~------~~L~lk~l~~~----~~~~f---~~~~-pP~~~~i~~ai~~L~~lgAld~~~---~LT~ 605 (764)
-...||+.+.+|.. .+|.++.+|.- ++..| .|+. +|+...+..|++.|..+|||+.++ .+|+
T Consensus 418 ~l~~~~e~~~s~l~~~~~l~~~~l~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~al~~L~~~g~i~~~~~~~~~t~ 497 (715)
T 2va8_A 418 YVLSDVEPIESKLGSERAFYTFLLGILSAEGNLSEKQLENFAYESLLAKQLVDVYFDRAIRWLLEHSFIKEEGNTFALTN 497 (715)
T ss_dssp TTSSCCCCCCCSCCSHHHHHHHHHHHHHHHCSEEHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHTTSEEECSSEEEECH
T ss_pred HHcCCCCCceecCCchhHHHHHHHHHHhccccCCHHHHHHHHHhhHHHhhcchHHHHHHHHHHHHCcCEeecCCeEeeCh
Confidence 24689999998876 66777777732 22222 3433 455677999999999999998774 8999
Q ss_pred HHHHHhcCCCChHHHHHHHHHHhhhhhhhhhhhccchhhhHHhhhccc-CCcceeeccccccCCCCCchhhhhcccCCCC
Q 038192 606 LGKAMAHYPMSPRHSRMLLTLIQTMKVKSYARANLVLGYGVAAAAALS-VSNPFVLQLEGTQTNSNDSELEERDNALDSE 684 (764)
Q Consensus 606 LG~~la~LPvdp~lgkmLl~~~~~~~~~~~~~~~~~l~~~~~iaA~ls-~~~~F~~p~~~~~~~~~~~~~~~~~~~~~~~ 684 (764)
+|+.|+.+|++|+.+||++.++.. .+ ..|...++.|+|+.+ ++++|+.|.+..
T Consensus 498 lG~~~~~~~~~~~~~~~~~~~~~~------~~-~~~~~~~l~~i~~~~e~~~~~~r~~e~~------------------- 551 (715)
T 2va8_A 498 FGKRVADLYINPFTADIIRKGLEG------HK-ASCELAYLHLLAFTPDGPLVSVGRNEEE------------------- 551 (715)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHH------SC-CCCHHHHHHHHHHSTTSCCCCCCHHHHH-------------------
T ss_pred HHHHHHHHcCCHhHHHHHHHHhhh------cc-CCCHHHHHHHhhcCcccccCccChHHHH-------------------
Confidence 999999999999999999987642 11 135556667666555 577776553210
Q ss_pred ChhhHHHHhhhhhHHHHHHHHHhh-cC-CCC-----C---cHHHHHHHHHHHHhcCCcHHHHHHhcCCHHHHHHHHHHHH
Q 038192 685 DPMCRQEKLGKRKLKEVAKLSHAK-FS-NPT-----S---DVLTVAYALQCFELSKSPVEFCNEYALHLKTMEEMSKLRK 754 (764)
Q Consensus 685 ~~~~~~~~~~~~~~~~~a~~~~~~-f~-~~~-----s---D~lt~ln~~~~~~~~~~~~~~C~~~~l~~~~l~~i~~ir~ 754 (764)
...+.+...... +. .+. . .|+-..-+.++|........+|+++.+....|..+.+.-.
T Consensus 552 ------------~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~ll~~~~~~~~~~~i~~~y~~~~gdl~~l~~~a~ 619 (715)
T 2va8_A 552 ------------ELIELLEDLDCELLIEEPYEEDEYSLYINALKVALIMKDWMDEVDEDTILSKYNIGSGDLRNMVETMD 619 (715)
T ss_dssp ------------HHHHHHTTCSSCCSSCCCSSHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred ------------HHHHHHHhcchhhcccccccccchhhhHHHHHHHHHHHHHHcCCCHHHHHHHHCCChhhHHHHHHHHH
Confidence 000000000000 00 000 0 2333445567787666777899999998888888777666
Q ss_pred HHHHHHH
Q 038192 755 QLLHLLF 761 (764)
Q Consensus 755 QL~~~l~ 761 (764)
.|.+.+.
T Consensus 620 ~l~~a~~ 626 (715)
T 2va8_A 620 WLTYSAY 626 (715)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6665544
No 3
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=100.00 E-value=1.2e-48 Score=466.54 Aligned_cols=517 Identities=17% Similarity=0.151 Sum_probs=355.5
Q ss_pred CchhhHHHHHHHHHcCCeEEEEecCCCCccccHHHHHHHhccCCCCCCCCCceEEEecccHHHHHHHHHHHH--HHhCCC
Q 038192 35 PIVMMEQEIMEAVNDNSAVIICGETGCGKTTQVPQFLFEAGFGSNRCSSRSGRIGVTQPRRVAVLATAKRVA--FELGLH 112 (764)
Q Consensus 35 Pi~~~~~~Il~~l~~~~vviI~GeTGSGKTTqvPq~Lle~~~~~~~~~~~~~~Ii~tQPRRiaAisvA~RVa--~E~g~~ 112 (764)
..+.+|.++++++.+++.++|+|+||||||++.++++++.... .++++|++|+|.+|.++++++. .++|.+
T Consensus 25 ~l~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~~l~il~~~~~-------~~~~l~i~P~r~La~q~~~~~~~~~~~g~~ 97 (702)
T 2p6r_A 25 ELFPPQAEAVEKVFSGKNLLLAMPTAAGKTLLAEMAMVREAIK-------GGKSLYVVPLRALAGEKYESFKKWEKIGLR 97 (702)
T ss_dssp CCCCCCHHHHHHHTTCSCEEEECSSHHHHHHHHHHHHHHHHHT-------TCCEEEEESSHHHHHHHHHHHTTTTTTTCC
T ss_pred CCCHHHHHHHHHHhCCCcEEEEcCCccHHHHHHHHHHHHHHHh-------CCcEEEEeCcHHHHHHHHHHHHHHHhcCCE
Confidence 3467788999999999999999999999999999999987432 1589999999999999999983 233555
Q ss_pred CCCEeeEEeccCcccCCCceEEEEchHHHHHHHHH-----------HHHHHHHHHhhcc------c-cCCccCCCCceEE
Q 038192 113 LGKEVGFQVRHDKKIGDSCSIKFMTDGILLRELKA-----------LYEKQQQLLRSGQ------C-IEPKDRVFPLKLI 174 (764)
Q Consensus 113 lG~~VGY~ir~e~~~s~~t~I~f~T~GiLLr~l~~-----------i~de~~~~l~~~~------~-~~~~~~~~~lKlI 174 (764)
+|..+|+..+.+... .+++|+|||+|+|++.+.. |+||+|.+...+. + .......+++|+|
T Consensus 98 v~~~~G~~~~~~~~~-~~~~Iiv~Tpe~l~~~l~~~~~~l~~~~~vIiDE~H~l~~~~r~~~~~~ll~~l~~~~~~~~ii 176 (702)
T 2p6r_A 98 IGISTGDYESRDEHL-GDCDIIVTTSEKADSLIRNRASWIKAVSCLVVDEIHLLDSEKRGATLEILVTKMRRMNKALRVI 176 (702)
T ss_dssp EEEECSSCBCCSSCS-TTCSEEEEEHHHHHHHHHTTCSGGGGCCEEEETTGGGGGCTTTHHHHHHHHHHHHHHCTTCEEE
T ss_pred EEEEeCCCCcchhhc-cCCCEEEECHHHHHHHHHcChhHHhhcCEEEEeeeeecCCCCcccHHHHHHHHHHhcCcCceEE
Confidence 666667666665544 3789999999999998753 5688886432111 0 0111234789999
Q ss_pred Eeecccc-hhhhccccCCCCCCCeeeeCCcccceeEEecCCCc--hhhHH------HHHHHHHHHHhhcCCCCCeEEecC
Q 038192 175 LMSATLR-VEDFISGGRLFRNPPIIEVPTRQFPVTVHFSKRTE--IVDYI------GQAYKKVMSIHKRLPQGGILVFVT 245 (764)
Q Consensus 175 LMSATl~-~~~f~~~~~~f~~~~vi~i~gr~~pV~~~y~~~~~--~~d~l------~~~~~~v~~i~~~~~~g~ilvF~~ 245 (764)
+||||++ .+.|. +||+ ++++..++|.+|++.++..... ..+.. ......+.+... +.+++|||++
T Consensus 177 ~lSATl~n~~~~~---~~l~-~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~LVF~~ 250 (702)
T 2p6r_A 177 GLSATAPNVTEIA---EWLD-ADYYVSDWRPVPLVEGVLCEGTLELFDGAFSTSRRVKFEELVEECVA--ENGGVLVFES 250 (702)
T ss_dssp EEECCCTTHHHHH---HHTT-CEEEECCCCSSCEEEEEECSSEEEEEETTEEEEEECCHHHHHHHHHH--TTCCEEEECS
T ss_pred EECCCcCCHHHHH---HHhC-CCcccCCCCCccceEEEeeCCeeeccCcchhhhhhhhHHHHHHHHHh--cCCCEEEEcC
Confidence 9999995 88888 5776 7788999999999876532211 00100 001222333332 5688999999
Q ss_pred CHHHHHHHHHHHHHHHHHhhhhccccccCCccccCCCCCccccchhHHhHHHHHhhcCcccccccccCCCCCcccccCcc
Q 038192 246 GQREVEYLCSKLRKASKQLLVNSSKENKGNQVVADSEPNATKDINMKEINEAFEIQGYSTEQQTDRFSSYDEDQFDIDDN 325 (764)
Q Consensus 246 g~~~ie~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~ 325 (764)
++++++.++..|.+...... +..+..+.+.
T Consensus 251 s~~~~~~~a~~L~~~~~~~~------------------------~~~~~~~~i~-------------------------- 280 (702)
T 2p6r_A 251 TRRGAEKTAVKLSAITAKYV------------------------ENEGLEKAIL-------------------------- 280 (702)
T ss_dssp SHHHHHHHHHHHHHHHHTTC------------------------CCSSHHHHHH--------------------------
T ss_pred CHHHHHHHHHHHHHHHHhhc------------------------ChHHHHHHHH--------------------------
Confidence 99999999998876322110 0000000000
Q ss_pred ccccccCccchhhhhhccchhhhhhhcCCCCCCCCcccccccchhhhhHHHHHHhhcCCCCCCCccccCCCCCCCCcCCC
Q 038192 326 ELDALSDSETESETEILGEDEKLVEQKCPMDGDDPVDVLKENWSLGSLKLAFEVLSGKNASGPSSQMKLSTPAIPEQCTE 405 (764)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilvfl~g~~~i~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (764)
.. .+. ..-..+.. +
T Consensus 281 -----------------~~-------------------~~~-~~~~~l~~----~------------------------- 294 (702)
T 2p6r_A 281 -----------------EE-------------------NEG-EMSRKLAE----C------------------------- 294 (702)
T ss_dssp -----------------TT-------------------CCS-HHHHHHHH----H-------------------------
T ss_pred -----------------hh-------------------ccc-cccHHHHH----H-------------------------
Confidence 00 000 00000000 0
Q ss_pred CCCCCCCCCCCCCCCCccccccCcccCCCCCeEEEecCCCCCHHHHHhhhccCCCCceEEEEecCcccccCCCCCeEEEE
Q 038192 406 LPPTPTPEQCPELSSPDVEKMGDNKRAGVGALCVLPLYAMLPAAAQLRVFEDVKEGERLVVVSTNVAETSLTIPGIKYVV 485 (764)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~pLHs~l~~~eQ~~vf~~~~~g~rKVIlsTNIAEtSITIpdV~~VI 485 (764)
-...+.++||+|+.++|..+++.|++|.++||+|||++|+|||||++++||
T Consensus 295 -----------------------------~~~~v~~~h~~l~~~~R~~v~~~f~~g~~~vlvaT~~l~~Gidip~~~~VI 345 (702)
T 2p6r_A 295 -----------------------------VRKGAAFHHAGLLNGQRRVVEDAFRRGNIKVVVATPTLAAGVNLPARRVIV 345 (702)
T ss_dssp -----------------------------HHTTCCEECTTSCHHHHHHHHHHHHTTSCCEEEECSTTTSSSCCCBSEEEE
T ss_pred -----------------------------HhcCeEEecCCCCHHHHHHHHHHHHCCCCeEEEECcHHhccCCCCceEEEE
Confidence 012366799999999999999999999999999999999999999999999
Q ss_pred eCCcccceeeccCCCccccceeeccHHhHHHhccccCCCC---CCEEEEccCHHHhcccCC--CCCCCcccccChhh---
Q 038192 486 DTGREKVKKYNSANGIESYEIQWISKASAAQRAGRAGRTA---PGHCYRLYSSAVFNNILP--DFSCAEISKVPVDG--- 557 (764)
Q Consensus 486 D~G~~K~~~yd~~~~~~~l~~~~iSkasa~QR~GRAGR~~---~G~cyrLys~~~~~~~l~--~~~~PEI~r~~L~~--- 557 (764)
|+ ...|| +. ..|+|.+++.||+|||||.+ +|.||+|+++..++..+. -+..||+.+.+|..
T Consensus 346 ~~----~~~yd---~~----~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~~~~~~~~~~~~~l~~~~e~~~s~l~~~~~ 414 (702)
T 2p6r_A 346 RS----LYRFD---GY----SKRIKVSEYKQMAGRAGRPGMDERGEAIIIVGKRDREIAVKRYIFGEPERITSKLGVETH 414 (702)
T ss_dssp CC----SEEES---SS----EEECCHHHHHHHHTTBSCTTTCSCEEEEEECCGGGHHHHHHTTTSSCCCCCCCCCCSHHH
T ss_pred cC----ceeeC---CC----CCcCCHHHHHHHhhhcCCCCCCCCceEEEEecCccHHHHHHHHhcCCCCCceeecCcchh
Confidence 97 45788 22 68999999999999999998 899999999887653222 24689999999876
Q ss_pred ---HHHHHHHcCCC-C---CCCC---CCC----CCCCHHHHHHHHHHHHHcccccCC--CCccHHHHHHhcCCCChHHHH
Q 038192 558 ---VVLLMKSMNID-K---VSNF---PFP----TPPEVTALVEAERCLKALEALDSN--GRLTALGKAMAHYPMSPRHSR 621 (764)
Q Consensus 558 ---~~L~lk~l~~~-~---~~~f---~~~----~pP~~~~i~~ai~~L~~lgAld~~--~~LT~LG~~la~LPvdp~lgk 621 (764)
.+|.+...|.. + +..| .|+ .||..+.+..|++.|..+|+++.+ +.+|++|+.|+.+|++|+.+|
T Consensus 415 l~~~~l~~~~~g~~~~~~~~~~~l~~t~~~~~~~~~~~~~~~~al~~L~~~g~i~~~~~~~~t~lG~~~~~~~~~~~~~~ 494 (702)
T 2p6r_A 415 LRFHSLSIICDGYAKTLEELEDFFADTFFFKQNEISLSYELERVVRQLENWGMVVEAAHLAPTKLGSLVSRLYIDPLTGF 494 (702)
T ss_dssp HHHHHHHHHHHTSCSSHHHHHHHHHTSTTHHHHCCCCHHHHHHHHHHHHHTTSEEESSSEEECHHHHHHHHTTCCHHHHH
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHHHHCcCeeECCeeccChHHHHHHHHhCCHHHHH
Confidence 56666777632 2 2221 222 378899999999999999999977 789999999999999999999
Q ss_pred HHHHHHhhhhhhhhhhhccchhhhHHhhhccc-CCcceeeccccccCCCCCchhhhhcccCCCCChhhHHHHhhhhhHHH
Q 038192 622 MLLTLIQTMKVKSYARANLVLGYGVAAAAALS-VSNPFVLQLEGTQTNSNDSELEERDNALDSEDPMCRQEKLGKRKLKE 700 (764)
Q Consensus 622 mLl~~~~~~~~~~~~~~~~~l~~~~~iaA~ls-~~~~F~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 700 (764)
|++.++.... .|...++.|+|+.+ .++.++.+.+ . . ..+
T Consensus 495 ~~~~~~~~~~--------~~~~~~l~~i~~~~e~~~i~~r~~e-~--------------------~-----------~~~ 534 (702)
T 2p6r_A 495 IFHDVLSRME--------LSDIGALHLICRTPDMERLTVRKTD-S--------------------W-----------VEE 534 (702)
T ss_dssp HHHHHTTTCC--------CCHHHHHHHHHHSTTSCCCCCCTTT-H--------------------H-----------HHH
T ss_pred HHHHHhhccc--------CCHHHHHHHhhCCcccccCCCCCch-H--------------------H-----------HHH
Confidence 9998754200 23334556666554 3566654422 0 0 001
Q ss_pred HHHHHHhhc-CCC--CC-------cHHHHHHHHHHHHhcCCcHHHHHHhcCCHHHHHHHHHHHHHHHHHHH
Q 038192 701 VAKLSHAKF-SNP--TS-------DVLTVAYALQCFELSKSPVEFCNEYALHLKTMEEMSKLRKQLLHLLF 761 (764)
Q Consensus 701 ~a~~~~~~f-~~~--~s-------D~lt~ln~~~~~~~~~~~~~~C~~~~l~~~~l~~i~~ir~QL~~~l~ 761 (764)
.+......+ ..+ .. .|+-..-+.++|.....-...|+++.+...-++.+.+.-..|.+.+.
T Consensus 535 ~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~lL~~~~~~~~l~~i~~~~~~~~gdl~~i~~~a~~l~~a~~ 605 (702)
T 2p6r_A 535 EAFRLRKELSYYPSDFSVEYDWFLSEVKTALCLKDWIEEKDEDEICAKYGIAPGDLRRIVETAEWLSNAMN 605 (702)
T ss_dssp HHHHHGGGSSCCCCTTSTTHHHHHHHHHHHHHHHHHHTTCCHHHHHHHTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccccccCCcchhhhhhhhhhhhHHHHHHHHHHHcCCChHHHHHHhCCcHHhHHHHHHHHHHHHHHHH
Confidence 111101111 111 11 34445556788876666688999999988888877776666655544
No 4
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=100.00 E-value=4e-44 Score=428.58 Aligned_cols=455 Identities=15% Similarity=0.094 Sum_probs=303.9
Q ss_pred CchhhHHHHHHH-HHcCCeEEEEecCCCCccccHHHHHHHhccCCCCCCCCCceEEEecccHHHHHHHHHHHHHHhCCCC
Q 038192 35 PIVMMEQEIMEA-VNDNSAVIICGETGCGKTTQVPQFLFEAGFGSNRCSSRSGRIGVTQPRRVAVLATAKRVAFELGLHL 113 (764)
Q Consensus 35 Pi~~~~~~Il~~-l~~~~vviI~GeTGSGKTTqvPq~Lle~~~~~~~~~~~~~~Ii~tQPRRiaAisvA~RVa~E~g~~l 113 (764)
..+.+|.+++++ +.+++.++|+|+||||||++.++++++.....+ ++++|++|+|.+|.+++++++ .++ ..
T Consensus 23 ~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~~------~~~l~i~P~raLa~q~~~~~~-~l~-~~ 94 (720)
T 2zj8_A 23 SFYPPQAEALKSGILEGKNALISIPTASGKTLIAEIAMVHRILTQG------GKAVYIVPLKALAEEKFQEFQ-DWE-KI 94 (720)
T ss_dssp BCCHHHHHHHTTTGGGTCEEEEECCGGGCHHHHHHHHHHHHHHHHC------SEEEEECSSGGGHHHHHHHTG-GGG-GG
T ss_pred CCCHHHHHHHHHHhcCCCcEEEEcCCccHHHHHHHHHHHHHHHhCC------CEEEEEcCcHHHHHHHHHHHH-HHH-hc
Confidence 668889999998 889999999999999999999999997654222 589999999999999999995 221 22
Q ss_pred CCEeeEEec---cCcccCCCceEEEEchHHHHHHHHH-----------HHHHHHHHHhhcccc---CC-ccCCCCceEEE
Q 038192 114 GKEVGFQVR---HDKKIGDSCSIKFMTDGILLRELKA-----------LYEKQQQLLRSGQCI---EP-KDRVFPLKLIL 175 (764)
Q Consensus 114 G~~VGY~ir---~e~~~s~~t~I~f~T~GiLLr~l~~-----------i~de~~~~l~~~~~~---~~-~~~~~~lKlIL 175 (764)
|..||..++ .+.+...+++|+|||+|+|++.+.. |+||+|.+...+... .+ .....++|+|+
T Consensus 95 g~~v~~~~G~~~~~~~~~~~~~Iiv~Tpe~l~~~~~~~~~~l~~~~~vIiDE~H~l~~~~r~~~~~~ll~~l~~~~~ii~ 174 (720)
T 2zj8_A 95 GLRVAMATGDYDSKDEWLGKYDIIIATAEKFDSLLRHGSSWIKDVKILVADEIHLIGSRDRGATLEVILAHMLGKAQIIG 174 (720)
T ss_dssp TCCEEEECSCSSCCCGGGGGCSEEEECHHHHHHHHHHTCTTGGGEEEEEEETGGGGGCTTTHHHHHHHHHHHBTTBEEEE
T ss_pred CCEEEEecCCCCccccccCCCCEEEECHHHHHHHHHcChhhhhcCCEEEEECCcccCCCcccHHHHHHHHHhhcCCeEEE
Confidence 444554333 3333334789999999999998753 568888543211100 00 00113799999
Q ss_pred eeccc-chhhhccccCCCCCCCeeeeCCcccceeEEecCCCc--hhh----HHHHHHHHHHHHhhcCCCCCeEEecCCHH
Q 038192 176 MSATL-RVEDFISGGRLFRNPPIIEVPTRQFPVTVHFSKRTE--IVD----YIGQAYKKVMSIHKRLPQGGILVFVTGQR 248 (764)
Q Consensus 176 MSATl-~~~~f~~~~~~f~~~~vi~i~gr~~pV~~~y~~~~~--~~d----~l~~~~~~v~~i~~~~~~g~ilvF~~g~~ 248 (764)
||||+ +.+.|. +||+ ++.+..++|.+|++.++..... ..+ ........+.+.+. +.+++|||+++++
T Consensus 175 lSATl~n~~~~~---~~l~-~~~~~~~~rp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~LVF~~sr~ 248 (720)
T 2zj8_A 175 LSATIGNPEELA---EWLN-AELIVSDWRPVKLRRGVFYQGFVTWEDGSIDRFSSWEELVYDAIR--KKKGALIFVNMRR 248 (720)
T ss_dssp EECCCSCHHHHH---HHTT-EEEEECCCCSSEEEEEEEETTEEEETTSCEEECSSTTHHHHHHHH--TTCCEEEECSCHH
T ss_pred EcCCcCCHHHHH---HHhC-CcccCCCCCCCcceEEEEeCCeeeccccchhhhhHHHHHHHHHHh--CCCCEEEEecCHH
Confidence 99999 788888 4775 5667788888888764321110 000 00111222333332 4688999999999
Q ss_pred HHHHHHHHHHHHHHHhhhhccccccCCccccCCCCCccccchhHHhHHHHHhhcCcccccccccCCCCCcccccCccccc
Q 038192 249 EVEYLCSKLRKASKQLLVNSSKENKGNQVVADSEPNATKDINMKEINEAFEIQGYSTEQQTDRFSSYDEDQFDIDDNELD 328 (764)
Q Consensus 249 ~ie~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~ 328 (764)
+++.++..|.+....... ..+...+.....
T Consensus 249 ~~~~~a~~L~~~~~~~~~---------------------~~~~~~~~~~~~----------------------------- 278 (720)
T 2zj8_A 249 KAERVALELSKKVKSLLT---------------------KPEIRALNELAD----------------------------- 278 (720)
T ss_dssp HHHHHHHHHHHHHGGGSC---------------------HHHHHHHHHHHH-----------------------------
T ss_pred HHHHHHHHHHHHHHHhcC---------------------hhhHHHHHHHHH-----------------------------
Confidence 999999998763221100 000000000000
Q ss_pred cccCccchhhhhhccchhhhhhhcCCCCCCCCcccccccchhhhhHHHHHHhhcCCCCCCCccccCCCCCCCCcCCCCCC
Q 038192 329 ALSDSETESETEILGEDEKLVEQKCPMDGDDPVDVLKENWSLGSLKLAFEVLSGKNASGPSSQMKLSTPAIPEQCTELPP 408 (764)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilvfl~g~~~i~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 408 (764)
. + . .+. ....+. .+
T Consensus 279 -----------------------~-------i-~--~~~-~~~~l~----~~---------------------------- 292 (720)
T 2zj8_A 279 -----------------------S-------L-E--ENP-TNEKLA----KA---------------------------- 292 (720)
T ss_dssp -----------------------T-------S-C--SCH-HHHHHH----HH----------------------------
T ss_pred -----------------------H-------H-h--ccc-chHHHH----HH----------------------------
Confidence 0 0 0 000 000010 00
Q ss_pred CCCCCCCCCCCCCccccccCcccCCCCCeEEEecCCCCCHHHHHhhhccCCCCceEEEEecCcccccCCCCCeEEEEeCC
Q 038192 409 TPTPEQCPELSSPDVEKMGDNKRAGVGALCVLPLYAMLPAAAQLRVFEDVKEGERLVVVSTNVAETSLTIPGIKYVVDTG 488 (764)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~pLHs~l~~~eQ~~vf~~~~~g~rKVIlsTNIAEtSITIpdV~~VID~G 488 (764)
-...+.++||+|+.++|.++++.|++|.++||+|||++|+|||||++++|||.+
T Consensus 293 --------------------------~~~~v~~~h~~l~~~~R~~v~~~f~~g~~~vlvaT~~l~~Gvdip~~~~VI~~~ 346 (720)
T 2zj8_A 293 --------------------------IRGGVAFHHAGLGRDERVLVEENFRKGIIKAVVATPTLSAGINTPAFRVIIRDI 346 (720)
T ss_dssp --------------------------HTTTEEEECTTSCHHHHHHHHHHHHTTSSCEEEECSTTGGGCCCCBSEEEECCS
T ss_pred --------------------------HhcCeeeecCCCCHHHHHHHHHHHHCCCCeEEEECcHhhccCCCCceEEEEcCC
Confidence 012488999999999999999999999999999999999999999999999966
Q ss_pred cccceeeccCCCccccceeeccHHhHHHhccccCCCC---CCEEEEccCHHHhcc---cCCCCCCCccccc-----Chhh
Q 038192 489 REKVKKYNSANGIESYEIQWISKASAAQRAGRAGRTA---PGHCYRLYSSAVFNN---ILPDFSCAEISKV-----PVDG 557 (764)
Q Consensus 489 ~~K~~~yd~~~~~~~l~~~~iSkasa~QR~GRAGR~~---~G~cyrLys~~~~~~---~l~~~~~PEI~r~-----~L~~ 557 (764)
..|| ..+ ..|+|.+++.||+|||||.+ +|.||.||++..++. .+-....+++... .|..
T Consensus 347 ----~~yd-~~g-----~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~~~~~~~~~~~~~~~~~~~~i~s~l~~~~~l~~ 416 (720)
T 2zj8_A 347 ----WRYS-DFG-----MERIPIIEVHQMLGRAGRPKYDEVGEGIIVSTSDDPREVMNHYIFGKPEKLFSQLSNESNLRS 416 (720)
T ss_dssp ----EECC-SSS-----CEECCHHHHHHHHTTBCCTTTCSEEEEEEECSSSCHHHHHHHHTTSCCCCCCCCTTCHHHHHH
T ss_pred ----eeec-CCC-----CccCCHHHHHHHHhhcCCCCCCCCceEEEEecCccHHHHHHHHhcCCCCCcEeecCchhhHHH
Confidence 4577 222 26899999999999999998 699999999765321 1222333444332 1334
Q ss_pred HHHHHHHcCCC----CCCC---CCCC------CCCCHHHHHHHHHHHHHccccc-CCC---CccHHHHHHhcCCCChHHH
Q 038192 558 VVLLMKSMNID----KVSN---FPFP------TPPEVTALVEAERCLKALEALD-SNG---RLTALGKAMAHYPMSPRHS 620 (764)
Q Consensus 558 ~~L~lk~l~~~----~~~~---f~~~------~pP~~~~i~~ai~~L~~lgAld-~~~---~LT~LG~~la~LPvdp~lg 620 (764)
.+|.....|.. ++.+ +.|+ ++|..+.+..|++.|...|+|+ .++ .+|++|+.|+.+|++|..+
T Consensus 417 ~ll~~i~~~~~~~~~d~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~L~~~~~i~~~~~~~~~~t~lG~~~~~~~~~~~~~ 496 (720)
T 2zj8_A 417 QVLALIATFGYSTVEEILKFISNTFYAYQRKDTYSLEEKIRNILYFLLENEFIEISLEDKIRPLSLGIRTAKLYIDPYTA 496 (720)
T ss_dssp HHHHHHHHSCCCSHHHHHHHHHTSHHHHHCSCCHHHHHHHHHHHHHHHHTTSEEECTTSCEEECHHHHHHHHHTCCHHHH
T ss_pred HHHHHHHhCCCCCHHHHHHHHHhChHHHhccchHHHHHHHHHHHHHHHHCCCeeECCCCcEeeChHHHHHHHHcCCHHHH
Confidence 45555555521 1222 1232 3344578999999999999998 655 7999999999999999999
Q ss_pred HHHHHHHhhhhhhhhhhhccchhhhHHhhhcccC-Ccceeec
Q 038192 621 RMLLTLIQTMKVKSYARANLVLGYGVAAAAALSV-SNPFVLQ 661 (764)
Q Consensus 621 kmLl~~~~~~~~~~~~~~~~~l~~~~~iaA~ls~-~~~F~~p 661 (764)
|+++.++... ....|...++.|+|+++. ++.|+.|
T Consensus 497 ~~~~~~~~~~------~~~~~~~~~l~i~~~~~e~~~i~~r~ 532 (720)
T 2zj8_A 497 KMFKDKMEEV------VKDPNPIGIFHLISLTPDITPFNYSK 532 (720)
T ss_dssp HHHHHHHHHH------HHSCCHHHHHHHHHTSTTCCCCCCCH
T ss_pred HHHHHHHHhh------ccCCCHHHHHHHhccCccccccccCH
Confidence 9999875421 001355667788888874 6777654
No 5
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=100.00 E-value=5.7e-36 Score=348.70 Aligned_cols=294 Identities=20% Similarity=0.232 Sum_probs=214.7
Q ss_pred ChhHHHhhhcCCCchhhHHHHHHHHHcCCeEEEEecCCCCccccHHHHHHHhccCCCCCCCCCceEEEecccHHHHHHHH
Q 038192 23 RPNEVENNRKDLPIVMMEQEIMEAVNDNSAVIICGETGCGKTTQVPQFLFEAGFGSNRCSSRSGRIGVTQPRRVAVLATA 102 (764)
Q Consensus 23 ~~~~~~~~R~~LPi~~~~~~Il~~l~~~~vviI~GeTGSGKTTqvPq~Lle~~~~~~~~~~~~~~Ii~tQPRRiaAisvA 102 (764)
++.+..+.|..||++.++++|+.+++++++++++|+||||||+++|+++++.+ .+++|++|||++|.+++
T Consensus 205 ~p~e~l~~r~~lP~~~~q~~i~~~L~~~~~vlv~ApTGSGKT~a~~l~ll~~g----------~~vLVl~PTReLA~Qia 274 (666)
T 3o8b_A 205 VPVESMETTMRSPVFTDNSSPPAVPQSFQVAHLHAPTGSGKSTKVPAAYAAQG----------YKVLVLNPSVAATLGFG 274 (666)
T ss_dssp EEHHHHHHHHHSCSCCCCCSCCCCCSSCEEEEEECCTTSCTTTHHHHHHHHTT----------CCEEEEESCHHHHHHHH
T ss_pred cchHhhhhhccCCcHHHHHHHHHHHHcCCeEEEEeCCchhHHHHHHHHHHHCC----------CeEEEEcchHHHHHHHH
Confidence 44567888999999999999999999999999999999999999999999842 47999999999999999
Q ss_pred HHHHHHhCCCCCCEeeEEeccCcccCCCceEEEEchHHHHHHHH--------HHHHHHHHHHhhcc------ccCCccCC
Q 038192 103 KRVAFELGLHLGKEVGFQVRHDKKIGDSCSIKFMTDGILLRELK--------ALYEKQQQLLRSGQ------CIEPKDRV 168 (764)
Q Consensus 103 ~RVa~E~g~~lG~~VGY~ir~e~~~s~~t~I~f~T~GiLLr~l~--------~i~de~~~~l~~~~------~~~~~~~~ 168 (764)
++++++++..+|..+||.. ...+++|+|+|+|+|++.-. -|+||+|. +..++ +.......
T Consensus 275 ~~l~~~~g~~vg~~vG~~~-----~~~~~~IlV~TPGrLl~~~~l~l~~l~~lVlDEAH~-l~~~~~~~l~~Il~~l~~~ 348 (666)
T 3o8b_A 275 AYMSKAHGIDPNIRTGVRT-----ITTGAPVTYSTYGKFLADGGCSGGAYDIIICDECHS-TDSTTILGIGTVLDQAETA 348 (666)
T ss_dssp HHHHHHHSCCCEEECSSCE-----ECCCCSEEEEEHHHHHHTTSCCTTSCSEEEETTTTC-CSHHHHHHHHHHHHHTTTT
T ss_pred HHHHHHhCCCeeEEECcEe-----ccCCCCEEEECcHHHHhCCCcccCcccEEEEccchh-cCccHHHHHHHHHHhhhhc
Confidence 9999999988777777644 35678999999999965320 15688753 22221 11111222
Q ss_pred CCceEEEeecccchhhhccccCCCCCCCeeeeCCcccceeEEecCCCchhhHHHHHHHHHHHHhhcCCCCCeEEecCCHH
Q 038192 169 FPLKLILMSATLRVEDFISGGRLFRNPPIIEVPTRQFPVTVHFSKRTEIVDYIGQAYKKVMSIHKRLPQGGILVFVTGQR 248 (764)
Q Consensus 169 ~~lKlILMSATl~~~~f~~~~~~f~~~~vi~i~gr~~pV~~~y~~~~~~~d~l~~~~~~v~~i~~~~~~g~ilvF~~g~~ 248 (764)
....+++||||++.. +. +..+.+..+.-. +.-.+.+..... . ......+.+|||+++++
T Consensus 349 ~~~llil~SAT~~~~-i~-----~~~p~i~~v~~~-~~~~i~~~~~~~--~------------l~~~~~~~vLVFv~Tr~ 407 (666)
T 3o8b_A 349 GARLVVLATATPPGS-VT-----VPHPNIEEVALS-NTGEIPFYGKAI--P------------IEAIRGGRHLIFCHSKK 407 (666)
T ss_dssp TCSEEEEEESSCTTC-CC-----CCCTTEEEEECB-SCSSEEETTEEE--C------------GGGSSSSEEEEECSCHH
T ss_pred CCceEEEECCCCCcc-cc-----cCCcceEEEeec-ccchhHHHHhhh--h------------hhhccCCcEEEEeCCHH
Confidence 334588899999652 21 111112111110 000111111000 0 11235678999999999
Q ss_pred HHHHHHHHHHHHHHHhhhhccccccCCccccCCCCCccccchhHHhHHHHHhhcCcccccccccCCCCCcccccCccccc
Q 038192 249 EVEYLCSKLRKASKQLLVNSSKENKGNQVVADSEPNATKDINMKEINEAFEIQGYSTEQQTDRFSSYDEDQFDIDDNELD 328 (764)
Q Consensus 249 ~ie~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~ 328 (764)
+++.+++.|++
T Consensus 408 ~ae~la~~L~~--------------------------------------------------------------------- 418 (666)
T 3o8b_A 408 KCDELAAKLSG--------------------------------------------------------------------- 418 (666)
T ss_dssp HHHHHHHHHHT---------------------------------------------------------------------
T ss_pred HHHHHHHHHHh---------------------------------------------------------------------
Confidence 88887766632
Q ss_pred cccCccchhhhhhccchhhhhhhcCCCCCCCCcccccccchhhhhHHHHHHhhcCCCCCCCccccCCCCCCCCcCCCCCC
Q 038192 329 ALSDSETESETEILGEDEKLVEQKCPMDGDDPVDVLKENWSLGSLKLAFEVLSGKNASGPSSQMKLSTPAIPEQCTELPP 408 (764)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilvfl~g~~~i~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 408 (764)
T Consensus 419 -------------------------------------------------------------------------------- 418 (666)
T 3o8b_A 419 -------------------------------------------------------------------------------- 418 (666)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCCCCCCccccccCcccCCCCCeEEEecCCCCCHHHHHhhhccCCCCceEEEEecCcccccCCCCCeEEEEeCC
Q 038192 409 TPTPEQCPELSSPDVEKMGDNKRAGVGALCVLPLYAMLPAAAQLRVFEDVKEGERLVVVSTNVAETSLTIPGIKYVVDTG 488 (764)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~pLHs~l~~~eQ~~vf~~~~~g~rKVIlsTNIAEtSITIpdV~~VID~G 488 (764)
.++.+.++||+|++++ +.++.++||||||+||+||||| |++|||+|
T Consensus 419 --------------------------~g~~v~~lHG~l~q~e-------r~~~~~~VLVATdVaerGIDId-V~~VI~~G 464 (666)
T 3o8b_A 419 --------------------------LGINAVAYYRGLDVSV-------IPTIGDVVVVATDALMTGYTGD-FDSVIDCN 464 (666)
T ss_dssp --------------------------TTCCEEEECTTSCGGG-------SCSSSCEEEEECTTHHHHCCCC-BSEEEECC
T ss_pred --------------------------CCCcEEEecCCCCHHH-------HHhCCCcEEEECChHHccCCCC-CcEEEecC
Confidence 1245888999998764 2346679999999999999997 99999999
Q ss_pred ccccee----eccCCCccccceeeccHHhHHHhccccCCCCCCEEEEccCHHHh
Q 038192 489 REKVKK----YNSANGIESYEIQWISKASAAQRAGRAGRTAPGHCYRLYSSAVF 538 (764)
Q Consensus 489 ~~K~~~----yd~~~~~~~l~~~~iSkasa~QR~GRAGR~~~G~cyrLys~~~~ 538 (764)
+.+... |||..++..+ ..|+|.++|.||+|||||.++|. |.||++.++
T Consensus 465 l~~~~ViNyDydP~~gl~~~-~~P~s~~syiQRiGRtGRg~~G~-i~lvt~~e~ 516 (666)
T 3o8b_A 465 TCVTQTVDFSLDPTFTIETT-TVPQDAVSRSQRRGRTGRGRRGI-YRFVTPGER 516 (666)
T ss_dssp EEEEEEEECCCSSSCEEEEE-EEECBHHHHHHHHTTBCSSSCEE-EEESCCCCB
T ss_pred cccccccccccccccccccc-cCcCCHHHHHHHhccCCCCCCCE-EEEEecchh
Confidence 998775 6677777654 68999999999999999987899 999998654
No 6
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=100.00 E-value=5.8e-34 Score=323.25 Aligned_cols=278 Identities=19% Similarity=0.211 Sum_probs=200.0
Q ss_pred HHHHHcCCeEEEEecCCCCccccHHHHHHHhccCCCCCCCCCceEEEecccHHHHHHHHHHHHHHhCCCCCCEeeEEecc
Q 038192 44 MEAVNDNSAVIICGETGCGKTTQVPQFLFEAGFGSNRCSSRSGRIGVTQPRRVAVLATAKRVAFELGLHLGKEVGFQVRH 123 (764)
Q Consensus 44 l~~l~~~~vviI~GeTGSGKTTqvPq~Lle~~~~~~~~~~~~~~Ii~tQPRRiaAisvA~RVa~E~g~~lG~~VGY~ir~ 123 (764)
.+++.++++++|+|+||||||+++..++++.....+ ++++|++|+|.+|.++++++. |..++|+.+.
T Consensus 15 ~~~l~~~~~vlv~a~TGsGKT~~~~l~il~~~~~~~------~~~lvl~Ptr~La~Q~~~~l~-------g~~v~~~~~~ 81 (459)
T 2z83_A 15 PNMLRKRQMTVLDLHPGSGKTRKILPQIIKDAIQQR------LRTAVLAPTRVVAAEMAEALR-------GLPVRYQTSA 81 (459)
T ss_dssp CGGGSTTCEEEECCCTTSCTTTTHHHHHHHHHHHTT------CCEEEEECSHHHHHHHHHHTT-------TSCEEECC--
T ss_pred HHHHhcCCcEEEECCCCCCHHHHHHHHHHHHHHhCC------CcEEEECchHHHHHHHHHHhc-------CceEeEEecc
Confidence 566788999999999999999998888877544222 589999999999999988774 5567776655
Q ss_pred Ccc-cCCCceEEEEchHHHHHHHHH----------HHHHHHH-----HHhhccccCCccCCCCceEEEeecccchhhhcc
Q 038192 124 DKK-IGDSCSIKFMTDGILLRELKA----------LYEKQQQ-----LLRSGQCIEPKDRVFPLKLILMSATLRVEDFIS 187 (764)
Q Consensus 124 e~~-~s~~t~I~f~T~GiLLr~l~~----------i~de~~~-----~l~~~~~~~~~~~~~~lKlILMSATl~~~~f~~ 187 (764)
... .++...+.++|.|.+++.+.. |+||+|+ ++..++..... ..++.++|+||||++.+...
T Consensus 82 ~~~~~t~~~~i~~~~~~~l~~~l~~~~~l~~~~~iViDEaH~~~~~~~~~~~~~~~~~-~~~~~~~il~SAT~~~~~~~- 159 (459)
T 2z83_A 82 VQREHQGNEIVDVMCHATLTHRLMSPNRVPNYNLFVMDEAHFTDPASIAARGYIATKV-ELGEAAAIFMTATPPGTTDP- 159 (459)
T ss_dssp ------CCCSEEEEEHHHHHHHHHSCC-CCCCSEEEESSTTCCSHHHHHHHHHHHHHH-HTTSCEEEEECSSCTTCCCS-
T ss_pred cccCCCCCcEEEEEchHHHHHHhhccccccCCcEEEEECCccCCchhhHHHHHHHHHh-ccCCccEEEEEcCCCcchhh-
Confidence 432 346678999999999987743 6799887 56666543322 23689999999999755322
Q ss_pred ccCCCCCCCeeeeCCcccceeEEecCCCchhhHHHHHHHHHHHHhhcCCCCCeEEecCCHHHHHHHHHHHHHHHHHhhhh
Q 038192 188 GGRLFRNPPIIEVPTRQFPVTVHFSKRTEIVDYIGQAYKKVMSIHKRLPQGGILVFVTGQREVEYLCSKLRKASKQLLVN 267 (764)
Q Consensus 188 ~~~~f~~~~vi~i~gr~~pV~~~y~~~~~~~d~l~~~~~~v~~i~~~~~~g~ilvF~~g~~~ie~l~~~L~~~~~~~~~~ 267 (764)
-...+.|++.+.. .+|...+.. ..+++. ...+.+|||+++...++.+++.|++
T Consensus 160 --~~~~~~pi~~~~~-~~~~~~~~~----~~~~l~------------~~~~~~LVF~~s~~~~~~l~~~L~~-------- 212 (459)
T 2z83_A 160 --FPDSNAPIHDLQD-EIPDRAWSS----GYEWIT------------EYAGKTVWFVASVKMGNEIAMCLQR-------- 212 (459)
T ss_dssp --SCCCSSCEEEEEC-CCCSSCCSS----CCHHHH------------HCCSCEEEECSCHHHHHHHHHHHHH--------
T ss_pred --hccCCCCeEEecc-cCCcchhHH----HHHHHH------------hcCCCEEEEeCChHHHHHHHHHHHh--------
Confidence 1123466655432 233221110 011211 1257899999999998888776643
Q ss_pred ccccccCCccccCCCCCccccchhHHhHHHHHhhcCcccccccccCCCCCcccccCccccccccCccchhhhhhccchhh
Q 038192 268 SSKENKGNQVVADSEPNATKDINMKEINEAFEIQGYSTEQQTDRFSSYDEDQFDIDDNELDALSDSETESETEILGEDEK 347 (764)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (764)
T Consensus 213 -------------------------------------------------------------------------------- 212 (459)
T 2z83_A 213 -------------------------------------------------------------------------------- 212 (459)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhhcCCCCCCCCcccccccchhhhhHHHHHHhhcCCCCCCCccccCCCCCCCCcCCCCCCCCCCCCCCCCCCCcccccc
Q 038192 348 LVEQKCPMDGDDPVDVLKENWSLGSLKLAFEVLSGKNASGPSSQMKLSTPAIPEQCTELPPTPTPEQCPELSSPDVEKMG 427 (764)
Q Consensus 348 ~~~~~~~~~~~~ilvfl~g~~~i~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 427 (764)
T Consensus 213 -------------------------------------------------------------------------------- 212 (459)
T 2z83_A 213 -------------------------------------------------------------------------------- 212 (459)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CcccCCCCCeEEEecCCCCCHHHHHhhhccCCCCceEEEEecCcccccCCCCCeEEEEeCCcccceeeccCCCccccc--
Q 038192 428 DNKRAGVGALCVLPLYAMLPAAAQLRVFEDVKEGERLVVVSTNVAETSLTIPGIKYVVDTGREKVKKYNSANGIESYE-- 505 (764)
Q Consensus 428 ~~~~~~~~~~~i~pLHs~l~~~eQ~~vf~~~~~g~rKVIlsTNIAEtSITIpdV~~VID~G~~K~~~yd~~~~~~~l~-- 505 (764)
.++.+..|||. +|.++++.|++|..+||||||++|+|||||+ .+|||+|+.+...|+ ..+...+.
T Consensus 213 -------~g~~v~~lh~~----~R~~~~~~f~~g~~~iLVaT~v~~~GiDip~-~~VI~~G~~~~~~~~-~~~~~~~~~~ 279 (459)
T 2z83_A 213 -------AGKKVIQLNRK----SYDTEYPKCKNGDWDFVITTDISEMGANFGA-SRVIDCRKSVKPTIL-EEGEGRVILG 279 (459)
T ss_dssp -------TTCCEEEESTT----CCCCCGGGSSSCCCSEEEESSCC---CCCSC-SEEEECCEECCEEEE-CSSSCEEEEC
T ss_pred -------cCCcEEecCHH----HHHHHHhhccCCCceEEEECChHHhCeecCC-CEEEECCcccccccc-cccccccccc
Confidence 01346678884 7888999999999999999999999999999 999999999988776 33444444
Q ss_pred -eeeccHHhHHHhccccCCCC--CCEEEEccCHH
Q 038192 506 -IQWISKASAAQRAGRAGRTA--PGHCYRLYSSA 536 (764)
Q Consensus 506 -~~~iSkasa~QR~GRAGR~~--~G~cyrLys~~ 536 (764)
..|.|++++.||+|||||.+ +|.||.+++..
T Consensus 280 ~d~p~s~~~~~QR~GRaGR~g~~~G~~~~~~~~~ 313 (459)
T 2z83_A 280 NPSPITSASAAQRRGRVGRNPNQVGDEYHYGGAT 313 (459)
T ss_dssp SCEECCHHHHHHHHTTSSCCTTCCCEEEEECSCC
T ss_pred cCCCCCHHHHHHhccccCCCCCCCCeEEEEEccc
Confidence 49999999999999999997 79999999875
No 7
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=100.00 E-value=3.6e-33 Score=316.05 Aligned_cols=278 Identities=20% Similarity=0.185 Sum_probs=208.2
Q ss_pred HHHHHHHcCCeEEEEecCCCCccccHHHHHHHhccCCCCCCCCCceEEEecccHHHHHHHHHHHHHHhCCCCCCEeeEEe
Q 038192 42 EIMEAVNDNSAVIICGETGCGKTTQVPQFLFEAGFGSNRCSSRSGRIGVTQPRRVAVLATAKRVAFELGLHLGKEVGFQV 121 (764)
Q Consensus 42 ~Il~~l~~~~vviI~GeTGSGKTTqvPq~Lle~~~~~~~~~~~~~~Ii~tQPRRiaAisvA~RVa~E~g~~lG~~VGY~i 121 (764)
.|..+++++++++++|+||||||+++...+++.....+ .+++|+.|+|++|.++++++. |..++|+.
T Consensus 11 ~i~~~l~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~~~------~~~lvl~Ptr~La~Q~~~~l~-------g~~v~~~~ 77 (451)
T 2jlq_A 11 VDEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALLRR------LRTLILAPTRVVAAEMEEALR-------GLPIRYQT 77 (451)
T ss_dssp CCGGGGSTTCEEEECCCTTSSCCTTHHHHHHHHHHHTT------CCEEEEESSHHHHHHHHHHTT-------TSCEEECC
T ss_pred HHHHHHhcCCeEEEECCCCCCHhhHHHHHHHHHHHhcC------CcEEEECCCHHHHHHHHHHhc-------Cceeeeee
Confidence 35566778898899999999999986666665443322 589999999999888877652 56788888
Q ss_pred ccCc-ccCCCceEEEEchHHHHHHHHH----------HHHHHHHH-----HhhccccCCccCCCCceEEEeecccchhhh
Q 038192 122 RHDK-KIGDSCSIKFMTDGILLRELKA----------LYEKQQQL-----LRSGQCIEPKDRVFPLKLILMSATLRVEDF 185 (764)
Q Consensus 122 r~e~-~~s~~t~I~f~T~GiLLr~l~~----------i~de~~~~-----l~~~~~~~~~~~~~~lKlILMSATl~~~~f 185 (764)
+... ..+.++.|.++|+|+|++++.. |+||+|.+ ...++... ....++.++|+||||++.+.+
T Consensus 78 ~~~~~~~~~~~~i~~~t~~~l~~~l~~~~~l~~~~~iViDEah~~~~~~~~~~~~~~~-~~~~~~~~~i~~SAT~~~~~~ 156 (451)
T 2jlq_A 78 PAVKSDHTGREIVDLMCHATFTTRLLSSTRVPNYNLIVMDEAHFTDPCSVAARGYIST-RVEMGEAAAIFMTATPPGSTD 156 (451)
T ss_dssp TTCSCCCCSSCCEEEEEHHHHHHHHHHCSCCCCCSEEEEETTTCCSHHHHHHHHHHHH-HHHTTSCEEEEECSSCTTCCC
T ss_pred ccccccCCCCceEEEEChHHHHHHhhCcccccCCCEEEEeCCccCCcchHHHHHHHHH-hhcCCCceEEEEccCCCccch
Confidence 7664 4456788999999999998854 56888763 22222111 112467999999999977655
Q ss_pred ccccCCCCCCCeeeeCCcccceeEEecCCCchhhHHHHHHHHHHHHhhcCCCCCeEEecCCHHHHHHHHHHHHHHHHHhh
Q 038192 186 ISGGRLFRNPPIIEVPTRQFPVTVHFSKRTEIVDYIGQAYKKVMSIHKRLPQGGILVFVTGQREVEYLCSKLRKASKQLL 265 (764)
Q Consensus 186 ~~~~~~f~~~~vi~i~gr~~pV~~~y~~~~~~~d~l~~~~~~v~~i~~~~~~g~ilvF~~g~~~ie~l~~~L~~~~~~~~ 265 (764)
. .++++++++.++ +.+|...+.. +.+++. ...+.+|||+++.++++.+++.|++
T Consensus 157 ~---~~~~~~~~~~~~-~~~p~~~~~~----~~~~l~------------~~~~~~lVF~~s~~~a~~l~~~L~~------ 210 (451)
T 2jlq_A 157 P---FPQSNSPIEDIE-REIPERSWNT----GFDWIT------------DYQGKTVWFVPSIKAGNDIANCLRK------ 210 (451)
T ss_dssp S---SCCCSSCEEEEE-CCCCSSCCSS----SCHHHH------------HCCSCEEEECSSHHHHHHHHHHHHT------
T ss_pred h---hhcCCCceEecC-ccCCchhhHH----HHHHHH------------hCCCCEEEEcCCHHHHHHHHHHHHH------
Confidence 4 355667777664 4455332211 112221 1256899999999988877766632
Q ss_pred hhccccccCCccccCCCCCccccchhHHhHHHHHhhcCcccccccccCCCCCcccccCccccccccCccchhhhhhccch
Q 038192 266 VNSSKENKGNQVVADSEPNATKDINMKEINEAFEIQGYSTEQQTDRFSSYDEDQFDIDDNELDALSDSETESETEILGED 345 (764)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (764)
T Consensus 211 -------------------------------------------------------------------------------- 210 (451)
T 2jlq_A 211 -------------------------------------------------------------------------------- 210 (451)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhhhhcCCCCCCCCcccccccchhhhhHHHHHHhhcCCCCCCCccccCCCCCCCCcCCCCCCCCCCCCCCCCCCCcccc
Q 038192 346 EKLVEQKCPMDGDDPVDVLKENWSLGSLKLAFEVLSGKNASGPSSQMKLSTPAIPEQCTELPPTPTPEQCPELSSPDVEK 425 (764)
Q Consensus 346 ~~~~~~~~~~~~~~ilvfl~g~~~i~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 425 (764)
T Consensus 211 -------------------------------------------------------------------------------- 210 (451)
T 2jlq_A 211 -------------------------------------------------------------------------------- 210 (451)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccCcccCCCCCeEEEecCCCCCHHHHHhhhccCCCCceEEEEecCcccccCCCCCeEEEEeCCcccceeeccCCCccccc
Q 038192 426 MGDNKRAGVGALCVLPLYAMLPAAAQLRVFEDVKEGERLVVVSTNVAETSLTIPGIKYVVDTGREKVKKYNSANGIESYE 505 (764)
Q Consensus 426 ~~~~~~~~~~~~~i~pLHs~l~~~eQ~~vf~~~~~g~rKVIlsTNIAEtSITIpdV~~VID~G~~K~~~yd~~~~~~~l~ 505 (764)
.++.+..|||.+. .++++.|++|..+||||||+||+|||||+ .+|||+|+.+...|| ..+...+.
T Consensus 211 ---------~g~~~~~lh~~~~----~~~~~~f~~g~~~vLVaT~v~~~GiDip~-~~VI~~~~~~~~~~d-~~~~~~l~ 275 (451)
T 2jlq_A 211 ---------SGKRVIQLSRKTF----DTEYPKTKLTDWDFVVTTDISEMGANFRA-GRVIDPRRCLKPVIL-TDGPERVI 275 (451)
T ss_dssp ---------TTCCEEEECTTTH----HHHGGGGGSSCCSEEEECGGGGSSCCCCC-SEEEECCEEEEEEEE-CSSSCEEE
T ss_pred ---------cCCeEEECCHHHH----HHHHHhhccCCceEEEECCHHHhCcCCCC-CEEEECCCccccccc-ccccceee
Confidence 0134668898754 57899999999999999999999999999 999999999999998 66777787
Q ss_pred e---eeccHHhHHHhccccCCCC--CCEEEEccC
Q 038192 506 I---QWISKASAAQRAGRAGRTA--PGHCYRLYS 534 (764)
Q Consensus 506 ~---~~iSkasa~QR~GRAGR~~--~G~cyrLys 534 (764)
. .|.|.+++.||+|||||.+ +|.||.+++
T Consensus 276 ~~~~~p~s~~~y~Qr~GRaGR~g~~~g~~~~~~~ 309 (451)
T 2jlq_A 276 LAGPIPVTPASAAQRRGRIGRNPAQEDDQYVFSG 309 (451)
T ss_dssp EEEEEECCHHHHHHHHTTSSCCTTCCCEEEEECS
T ss_pred ecccccCCHHHHHHhccccCCCCCCCccEEEEeC
Confidence 7 9999999999999999999 799998865
No 8
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=100.00 E-value=4.3e-33 Score=309.59 Aligned_cols=324 Identities=15% Similarity=0.210 Sum_probs=218.1
Q ss_pred hhcCCCchhhHHHHHHHHHcCCeEEEEecCCCCccccHHHHHHHhccCCCCCCCCCceEEEecccHHHHHHHHHHHHHHh
Q 038192 30 NRKDLPIVMMEQEIMEAVNDNSAVIICGETGCGKTTQVPQFLFEAGFGSNRCSSRSGRIGVTQPRRVAVLATAKRVAFEL 109 (764)
Q Consensus 30 ~R~~LPi~~~~~~Il~~l~~~~vviI~GeTGSGKTTqvPq~Lle~~~~~~~~~~~~~~Ii~tQPRRiaAisvA~RVa~E~ 109 (764)
.+.-.+.+.+|.+.+..+.+++.++++++||||||+++..++++...... ...+++++.|+|.+|.++++++.. +
T Consensus 57 ~~~~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~~----~~~~~lil~P~~~L~~q~~~~~~~-~ 131 (414)
T 3eiq_A 57 AYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIELDL----KATQALVLAPTRELAQQIQKVVMA-L 131 (414)
T ss_dssp HTTCCSCCHHHHHHHHHHHTTCCEEECCCSCSSSHHHHHHHHHHHCCTTS----CSCCEEEECSSHHHHHHHHHHHHH-H
T ss_pred HcCCCCCCHHHHHHhHHHhCCCCEEEECCCCCcccHHHHHHHHHHHhhcC----CceeEEEEeChHHHHHHHHHHHHH-H
Confidence 34445677788888888888888999999999999999999998754321 135899999999999999887765 5
Q ss_pred CCCCCCEeeEEeccCcc-------cCCCceEEEEchHHHHHHHHH-----------HHHHHHHHHhhccccC----CccC
Q 038192 110 GLHLGKEVGFQVRHDKK-------IGDSCSIKFMTDGILLRELKA-----------LYEKQQQLLRSGQCIE----PKDR 167 (764)
Q Consensus 110 g~~lG~~VGY~ir~e~~-------~s~~t~I~f~T~GiLLr~l~~-----------i~de~~~~l~~~~~~~----~~~~ 167 (764)
+...|..+++.+...+. ....++|+|+|+|+|++.+.. |+||+|.+...++... ....
T Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~~~~vViDEah~~~~~~~~~~~~~~~~~~ 211 (414)
T 3eiq_A 132 GDYMGASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLSRGFKDQIYDIFQKL 211 (414)
T ss_dssp GGGSCCCEEECCCCTTHHHHHHHHTTTCCSEEEECHHHHHHHHHHTSSCSTTCCEEEECSHHHHHHTTTHHHHHHHHTTS
T ss_pred hcccCceEEEEECCcchHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcccccCcEEEEECHHHhhccCcHHHHHHHHHhC
Confidence 44556666665554432 125689999999999999854 6799998766553211 1223
Q ss_pred CCCceEEEeecccchhhhccccCCCCCCCeeeeCCcccc---eeEEecCCCchhhHHHHHHHHHHHHhhcCCCCCeEEec
Q 038192 168 VFPLKLILMSATLRVEDFISGGRLFRNPPIIEVPTRQFP---VTVHFSKRTEIVDYIGQAYKKVMSIHKRLPQGGILVFV 244 (764)
Q Consensus 168 ~~~lKlILMSATl~~~~f~~~~~~f~~~~vi~i~gr~~p---V~~~y~~~~~~~d~l~~~~~~v~~i~~~~~~g~ilvF~ 244 (764)
.++.++|+||||+..+.......++.++..+.+.....+ +..+|..... .++ ....+..+....+.+.+|||+
T Consensus 212 ~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~---~~~~l~~~~~~~~~~~~lvf~ 287 (414)
T 3eiq_A 212 NSNTQVVLLSATMPSDVLEVTKKFMRDPIRILVKKEELTLEGIRQFYINVER-EEW---KLDTLCDLYETLTITQAVIFI 287 (414)
T ss_dssp CTTCEEEEECSCCCHHHHHHHTTTCSSCEEECCCCCCCCTTSCCEEEEECSS-STT---HHHHHHHHHHSSCCSSCEEEC
T ss_pred CCCCeEEEEEEecCHHHHHHHHHHcCCCEEEEecCCccCCCCceEEEEEeCh-HHh---HHHHHHHHHHhCCCCcEEEEe
Confidence 468899999999965433222267776666665544333 2233322211 121 122344455556678899999
Q ss_pred CCHHHHHHHHHHHHHHHHHhhhhccccccCCccccCCCCCccccchhHHhHHHHHhhcCcccccccccCCCCCcccccCc
Q 038192 245 TGQREVEYLCSKLRKASKQLLVNSSKENKGNQVVADSEPNATKDINMKEINEAFEIQGYSTEQQTDRFSSYDEDQFDIDD 324 (764)
Q Consensus 245 ~g~~~ie~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~ 324 (764)
++.+.++.+++.|.+
T Consensus 288 ~~~~~~~~l~~~l~~----------------------------------------------------------------- 302 (414)
T 3eiq_A 288 NTRRKVDWLTEKMHA----------------------------------------------------------------- 302 (414)
T ss_dssp SCHHHHHHHHHHHHT-----------------------------------------------------------------
T ss_pred CCHHHHHHHHHHHHh-----------------------------------------------------------------
Confidence 998888877665532
Q ss_pred cccccccCccchhhhhhccchhhhhhhcCCCCCCCCcccccccchhhhhHHHHHHhhcCCCCCCCccccCCCCCCCCcCC
Q 038192 325 NELDALSDSETESETEILGEDEKLVEQKCPMDGDDPVDVLKENWSLGSLKLAFEVLSGKNASGPSSQMKLSTPAIPEQCT 404 (764)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilvfl~g~~~i~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 404 (764)
T Consensus 303 -------------------------------------------------------------------------------- 302 (414)
T 3eiq_A 303 -------------------------------------------------------------------------------- 302 (414)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCCCCCCCCCCccccccCcccCCCCCeEEEecCCCCCHHHHHhhhccCCCCceEEEEecCcccccCCCCCeEEE
Q 038192 405 ELPPTPTPEQCPELSSPDVEKMGDNKRAGVGALCVLPLYAMLPAAAQLRVFEDVKEGERLVVVSTNVAETSLTIPGIKYV 484 (764)
Q Consensus 405 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~pLHs~l~~~eQ~~vf~~~~~g~rKVIlsTNIAEtSITIpdV~~V 484 (764)
.++.+..+||+++.++|.++++.|++|..+|+|||+++++||+||+|.+|
T Consensus 303 ------------------------------~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~v~~V 352 (414)
T 3eiq_A 303 ------------------------------RDFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLV 352 (414)
T ss_dssp ------------------------------TTCCCEEC---CHHHHHHHHHHHHSCC---CEEECSSCC--CCGGGCSCE
T ss_pred ------------------------------cCCeEEEecCCCCHHHHHHHHHHHHcCCCcEEEECCccccCCCccCCCEE
Confidence 12347789999999999999999999999999999999999999999999
Q ss_pred EeCCcccceeeccCCCccccceeeccHHhHHHhccccCCCC-CCEEEEccCHHHhcc--cCCCCCCCcccccCh
Q 038192 485 VDTGREKVKKYNSANGIESYEIQWISKASAAQRAGRAGRTA-PGHCYRLYSSAVFNN--ILPDFSCAEISKVPV 555 (764)
Q Consensus 485 ID~G~~K~~~yd~~~~~~~l~~~~iSkasa~QR~GRAGR~~-~G~cyrLys~~~~~~--~l~~~~~PEI~r~~L 555 (764)
|+.+. |.|.+++.||+|||||.+ +|.||.+|++..+.. .+..+-..++...|+
T Consensus 353 i~~~~------------------p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 408 (414)
T 3eiq_A 353 INYDL------------------PTNRENYIHRIGRGGRFGRKGVAINMVTEEDKRTLRDIETFYNTSIEEMPL 408 (414)
T ss_dssp EESSC------------------CSSTHHHHHHSCCC-------CEEEEECSTHHHHHHHHHHHTTCCCEECCC
T ss_pred EEeCC------------------CCCHHHhhhhcCcccCCCCCceEEEEEcHHHHHHHHHHHHHHcCCccccCh
Confidence 98443 346788899999999996 599999999765432 123333444444443
No 9
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=99.97 E-value=2e-32 Score=338.54 Aligned_cols=348 Identities=17% Similarity=0.206 Sum_probs=234.2
Q ss_pred hhcCCCchhhHHHHHHHHHcCCeEEEEecCCCCccccHHHHHHHhccCCCCCCCCCceEEEecccHHHHHHHHHHHHHHh
Q 038192 30 NRKDLPIVMMEQEIMEAVNDNSAVIICGETGCGKTTQVPQFLFEAGFGSNRCSSRSGRIGVTQPRRVAVLATAKRVAFEL 109 (764)
Q Consensus 30 ~R~~LPi~~~~~~Il~~l~~~~vviI~GeTGSGKTTqvPq~Lle~~~~~~~~~~~~~~Ii~tQPRRiaAisvA~RVa~E~ 109 (764)
.+..++.+.+|.+++.++.+++.++|+|+||||||++...++++.... ..+++++.|+|.+|.|.++++....
T Consensus 179 ~~~~f~ltp~Q~~AI~~i~~g~dvLV~ApTGSGKTlva~l~i~~~l~~-------g~rvlvl~PtraLa~Q~~~~l~~~~ 251 (1108)
T 3l9o_A 179 RTYPFTLDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLKN-------KQRVIYTSPIKALSNQKYRELLAEF 251 (1108)
T ss_dssp SCCSSCCCHHHHHHHHHHTTTCCEEEECCSSSHHHHHHHHHHHHHHHT-------TCEEEEEESSHHHHHHHHHHHHHHT
T ss_pred HhCCCCCCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHHHhc-------CCeEEEEcCcHHHHHHHHHHHHHHh
Confidence 344567789999999999999999999999999999998888876422 2589999999999999999999887
Q ss_pred CCCCCCEeeEEeccCcccCCCceEEEEchHHHHHHHHH-----------HHHHHHHHHhhcccc----CCccCCCCceEE
Q 038192 110 GLHLGKEVGFQVRHDKKIGDSCSIKFMTDGILLRELKA-----------LYEKQQQLLRSGQCI----EPKDRVFPLKLI 174 (764)
Q Consensus 110 g~~lG~~VGY~ir~e~~~s~~t~I~f~T~GiLLr~l~~-----------i~de~~~~l~~~~~~----~~~~~~~~lKlI 174 (764)
+ .||+ +.++...+.+++|+|||+|+|++++.. |+||+|++...++.. .+....++.++|
T Consensus 252 ~-----~Vgl-ltGd~~~~~~~~IlV~Tpe~L~~~L~~~~~~l~~l~lVVIDEaH~l~d~~rg~~~e~ii~~l~~~~qvl 325 (1108)
T 3l9o_A 252 G-----DVGL-MTGDITINPDAGCLVMTTEILRSMLYRGSEVMREVAWVIFDEVHYMRDKERGVVWEETIILLPDKVRYV 325 (1108)
T ss_dssp S-----SEEE-ECSSCBCCCSCSEEEEEHHHHHHHHHHCSSHHHHEEEEEEETGGGTTSHHHHHHHHHHHHHSCTTSEEE
T ss_pred C-----CccE-EeCccccCCCCCEEEeChHHHHHHHHcCccccccCCEEEEhhhhhccccchHHHHHHHHHhcCCCceEE
Confidence 6 4777 555666777899999999999998843 568988764433211 011124689999
Q ss_pred Eeeccc-chhhhcccc-CCCCC-CCeeeeCCcccceeEEecCCCc-----h----h-----hHH----------------
Q 038192 175 LMSATL-RVEDFISGG-RLFRN-PPIIEVPTRQFPVTVHFSKRTE-----I----V-----DYI---------------- 221 (764)
Q Consensus 175 LMSATl-~~~~f~~~~-~~f~~-~~vi~i~gr~~pV~~~y~~~~~-----~----~-----d~l---------------- 221 (764)
+||||+ +...|.... .+++. +.++..+.+..|++.++..... + . .+.
T Consensus 326 ~lSATipn~~e~a~~l~~~~~~~~~vi~~~~rp~pl~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~l~~~~~~~~~~ 405 (1108)
T 3l9o_A 326 FLSATIPNAMEFAEWICKIHSQPCHIVYTNFRPTPLQHYLFPAHGDGIYLVVDEKSTFREENFQKAMASISNQIGDDPNS 405 (1108)
T ss_dssp EEECSCSSCHHHHHHHHHHTCSCEEEEEECCCSSCEEEEEEETTSSCCEEEEETTTEECHHHHHHHHTTC----------
T ss_pred EEcCCCCCHHHHHHHHHhhcCCCeEEEecCCCcccceEEEeecCCcceeeeeccccchhhhhHHHHHHHHHhhhcccccc
Confidence 999999 555555210 12233 6677788888888776532110 0 0 000
Q ss_pred --------------------HHHHHHHHHHhhcCCCCCeEEecCCHHHHHHHHHHHHHHHHHhhhhccccccCCccccCC
Q 038192 222 --------------------GQAYKKVMSIHKRLPQGGILVFVTGQREVEYLCSKLRKASKQLLVNSSKENKGNQVVADS 281 (764)
Q Consensus 222 --------------------~~~~~~v~~i~~~~~~g~ilvF~~g~~~ie~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~ 281 (764)
...+..++..+.....+.+|||++++..++.++..|....-. ..
T Consensus 406 ~~~~~~~~~~~~~~~~~~~~~~~l~~li~~l~~~~~~~vIVF~~sr~~~e~la~~L~~~~~~----~~------------ 469 (1108)
T 3l9o_A 406 TDSRGKKGQTYKGGSAKGDAKGDIYKIVKMIWKKKYNPVIVFSFSKRDCEELALKMSKLDFN----SD------------ 469 (1108)
T ss_dssp -------------------CHHHHHHHHHHHHHTTCCCEEEEESCHHHHHHHHHHTCSHHHH----CC------------
T ss_pred cccccccccccccccccccchhHHHHHHHHHHhcCCCCEEEEeCcHHHHHHHHHHHHhccCC----CH------------
Confidence 112223444444455678999999999999888777431100 00
Q ss_pred CCCccccchhHHhHHHHHhhcCcccccccccCCCCCcccccCccccccccCccchhhhhhccchhhhhhhcCCCCCCCCc
Q 038192 282 EPNATKDINMKEINEAFEIQGYSTEQQTDRFSSYDEDQFDIDDNELDALSDSETESETEILGEDEKLVEQKCPMDGDDPV 361 (764)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il 361 (764)
.....+...+. .. +. ... ..+.
T Consensus 470 -------~e~~~i~~~~~--------------~~-----------~~-----~l~------~~d~--------------- 491 (1108)
T 3l9o_A 470 -------DEKEALTKIFN--------------NA-----------IA-----LLP------ETDR--------------- 491 (1108)
T ss_dssp -----------CHHHHGG--------------GS-----------CT-----HHH------HHTT---------------
T ss_pred -------HHHHHHHHHHH--------------HH-----------Hh-----hcc------hhhh---------------
Confidence 00000000000 00 00 000 0000
Q ss_pred ccccccchhhhhHHHHHHhhcCCCCCCCccccCCCCCCCCcCCCCCCCCCCCCCCCCCCCccccccCcccCCCCCeEEEe
Q 038192 362 DVLKENWSLGSLKLAFEVLSGKNASGPSSQMKLSTPAIPEQCTELPPTPTPEQCPELSSPDVEKMGDNKRAGVGALCVLP 441 (764)
Q Consensus 362 vfl~g~~~i~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~p 441 (764)
-+| .+...... -...|.+
T Consensus 492 -~l~------~~~~l~~~-------------------------------------------------------l~~gV~~ 509 (1108)
T 3l9o_A 492 -ELP------QIKHILPL-------------------------------------------------------LRRGIGI 509 (1108)
T ss_dssp -CCH------HHHHHTHH-------------------------------------------------------HHHTEEE
T ss_pred -hhh------hHHHHHHh-------------------------------------------------------hhcCeee
Confidence 000 00000000 1223899
Q ss_pred cCCCCCHHHHHhhhccCCCCceEEEEecCcccccCCCCCeEEEEeCCcccceeeccCCCccccceeeccHHhHHHhcccc
Q 038192 442 LYAMLPAAAQLRVFEDVKEGERLVVVSTNVAETSLTIPGIKYVVDTGREKVKKYNSANGIESYEIQWISKASAAQRAGRA 521 (764)
Q Consensus 442 LHs~l~~~eQ~~vf~~~~~g~rKVIlsTNIAEtSITIpdV~~VID~G~~K~~~yd~~~~~~~l~~~~iSkasa~QR~GRA 521 (764)
+||+|++.+|..+++.|+.|..+||+||+++++||+||+|++||++.. .||.. ...|+|.++|.||+|||
T Consensus 510 ~Hg~l~~~~R~~v~~~F~~G~ikVLVAT~vla~GIDiP~v~~VI~~~~----~~d~~------~~r~iS~~eyiQr~GRA 579 (1108)
T 3l9o_A 510 HHSGLLPILKEVIEILFQEGFLKVLFATETFSIGLNMPAKTVVFTSVR----KWDGQ------QFRWVSGGEYIQMSGRA 579 (1108)
T ss_dssp ECSCSCHHHHHHHHHHHHHTCCCEEEEESCCCSCCCC--CEEEESCSE----EESSS------CEEECCHHHHHHHHHHS
T ss_pred ecCCCCHHHHHHHHHHHhCCCCeEEEECcHHhcCCCCCCceEEEecCc----ccCcc------ccccCCHHHHHHhhccc
Confidence 999999999999999999999999999999999999999999998543 34443 24699999999999999
Q ss_pred CCCC---CCEEEEccCHH
Q 038192 522 GRTA---PGHCYRLYSSA 536 (764)
Q Consensus 522 GR~~---~G~cyrLys~~ 536 (764)
||.+ +|+||.+|+..
T Consensus 580 GR~G~d~~G~~ill~~~~ 597 (1108)
T 3l9o_A 580 GRRGLDDRGIVIMMIDEK 597 (1108)
T ss_dssp CCSSSCSSEEEEEEECCC
T ss_pred CCCCCCCceEEEEEecCC
Confidence 9999 79999999874
No 10
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=99.97 E-value=2.7e-31 Score=294.70 Aligned_cols=304 Identities=16% Similarity=0.211 Sum_probs=217.9
Q ss_pred hhhHHHHHHHHHcC--CeEEEEecCCCCccccHHHHHHHhccCCCCCCCCCceEEEecccHHHHHHHHHHHHHHhCCCCC
Q 038192 37 VMMEQEIMEAVNDN--SAVIICGETGCGKTTQVPQFLFEAGFGSNRCSSRSGRIGVTQPRRVAVLATAKRVAFELGLHLG 114 (764)
Q Consensus 37 ~~~~~~Il~~l~~~--~vviI~GeTGSGKTTqvPq~Lle~~~~~~~~~~~~~~Ii~tQPRRiaAisvA~RVa~E~g~~lG 114 (764)
+.+|.+.++.+..+ +.++++++||||||++...++++....... ..++++..|+|.+|.++++++........+
T Consensus 49 ~~~Q~~~i~~~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~~~~----~~~~lil~P~~~L~~q~~~~~~~~~~~~~~ 124 (412)
T 3fht_A 49 SKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANK----YPQCLCLSPTYELALQTGKVIEQMGKFYPE 124 (412)
T ss_dssp CHHHHHHHHHHHSSSCCCEEEECCTTSCHHHHHHHHHHHHCCTTSC----SCCEEEECSSHHHHHHHHHHHHHHTTTSTT
T ss_pred CHHHHHHHHHHhcCCCCeEEEECCCCchHHHHHHHHHHHHhhhcCC----CCCEEEECCCHHHHHHHHHHHHHHHhhccc
Confidence 45566666776665 789999999999999998888876543221 358999999999999999977665444346
Q ss_pred CEeeEEeccCccc---CCCceEEEEchHHHHHHHHH------------HHHHHHHHHh-hcccc---C-CccCCCCceEE
Q 038192 115 KEVGFQVRHDKKI---GDSCSIKFMTDGILLRELKA------------LYEKQQQLLR-SGQCI---E-PKDRVFPLKLI 174 (764)
Q Consensus 115 ~~VGY~ir~e~~~---s~~t~I~f~T~GiLLr~l~~------------i~de~~~~l~-~~~~~---~-~~~~~~~lKlI 174 (764)
..+++.++..... ...++|+|+|+|.|++.+.. |+||+|.++. .++.. . .....++.++|
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~~ivv~T~~~l~~~~~~~~~~~~~~~~~iViDEah~~~~~~~~~~~~~~~~~~~~~~~~~i 204 (412)
T 3fht_A 125 LKLAYAVRGNKLERGQKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLPRNCQML 204 (412)
T ss_dssp CCEEEECTTCCCCTTCCCCCSEEEECHHHHHHHHTTSCSSCGGGCCEEEEETHHHHHSTTTTHHHHHHHHHTSCTTCEEE
T ss_pred ceEEEeecCcchhhhhcCCCCEEEECchHHHHHHHhcCCcChhhCcEEEEeCHHHHhhcCCcHHHHHHHHhhCCCCceEE
Confidence 6788887765433 34578999999999998832 6799998765 22211 1 11224578999
Q ss_pred Eeecccchh--hhccccCCCCCCCeeeeCCccc---ceeEEecCCCchhhHHHHHHHHHHHHhhcCCCCCeEEecCCHHH
Q 038192 175 LMSATLRVE--DFISGGRLFRNPPIIEVPTRQF---PVTVHFSKRTEIVDYIGQAYKKVMSIHKRLPQGGILVFVTGQRE 249 (764)
Q Consensus 175 LMSATl~~~--~f~~~~~~f~~~~vi~i~gr~~---pV~~~y~~~~~~~d~l~~~~~~v~~i~~~~~~g~ilvF~~g~~~ 249 (764)
+||||+... .+.. .++.++..+.+..... .+..+|..... . ......+..+....+.+.+|||+++...
T Consensus 205 ~~SAT~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---~~~~~~l~~~~~~~~~~~~lvf~~~~~~ 278 (412)
T 3fht_A 205 LFSATFEDSVWKFAQ--KVVPDPNVIKLKREEETLDTIKQYYVLCSS-R---DEKFQALCNLYGAITIAQAMIFCHTRKT 278 (412)
T ss_dssp EEESCCCHHHHHHHH--HHSSSCEEECCCGGGSSCTTEEEEEEECSS-H---HHHHHHHHHHHHHHSSSEEEEECSSHHH
T ss_pred EEEeecCHHHHHHHH--HhcCCCeEEeeccccccccCceEEEEEcCC-h---HHHHHHHHHHHhhcCCCCEEEEeCCHHH
Confidence 999999654 3333 5666666665544322 23333332211 1 1122233333334456788999999888
Q ss_pred HHHHHHHHHHHHHHhhhhccccccCCccccCCCCCccccchhHHhHHHHHhhcCcccccccccCCCCCcccccCcccccc
Q 038192 250 VEYLCSKLRKASKQLLVNSSKENKGNQVVADSEPNATKDINMKEINEAFEIQGYSTEQQTDRFSSYDEDQFDIDDNELDA 329 (764)
Q Consensus 250 ie~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~ 329 (764)
++.++..|.+
T Consensus 279 ~~~l~~~L~~---------------------------------------------------------------------- 288 (412)
T 3fht_A 279 ASWLAAELSK---------------------------------------------------------------------- 288 (412)
T ss_dssp HHHHHHHHHH----------------------------------------------------------------------
T ss_pred HHHHHHHHHh----------------------------------------------------------------------
Confidence 8877666642
Q ss_pred ccCccchhhhhhccchhhhhhhcCCCCCCCCcccccccchhhhhHHHHHHhhcCCCCCCCccccCCCCCCCCcCCCCCCC
Q 038192 330 LSDSETESETEILGEDEKLVEQKCPMDGDDPVDVLKENWSLGSLKLAFEVLSGKNASGPSSQMKLSTPAIPEQCTELPPT 409 (764)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilvfl~g~~~i~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 409 (764)
T Consensus 289 -------------------------------------------------------------------------------- 288 (412)
T 3fht_A 289 -------------------------------------------------------------------------------- 288 (412)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCCCCCccccccCcccCCCCCeEEEecCCCCCHHHHHhhhccCCCCceEEEEecCcccccCCCCCeEEEEeCCc
Q 038192 410 PTPEQCPELSSPDVEKMGDNKRAGVGALCVLPLYAMLPAAAQLRVFEDVKEGERLVVVSTNVAETSLTIPGIKYVVDTGR 489 (764)
Q Consensus 410 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~pLHs~l~~~eQ~~vf~~~~~g~rKVIlsTNIAEtSITIpdV~~VID~G~ 489 (764)
.++.+..+||+|+.++|.++++.|.+|..+|+|||+++++||+||+|.+||+.+.
T Consensus 289 -------------------------~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~~~~Vi~~~~ 343 (412)
T 3fht_A 289 -------------------------EGHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGIDVEQVSVVINFDL 343 (412)
T ss_dssp -------------------------TTCCCEEECTTSCHHHHHHHHHHHHTTSCSEEEECGGGTSSCCCTTEEEEEESSC
T ss_pred -------------------------CCCeEEEecCCCCHHHHHHHHHHHHCCCCcEEEEcCccccCCCccCCCEEEEECC
Confidence 0134678899999999999999999999999999999999999999999998766
Q ss_pred ccceeeccCCCccccceeeccHHhHHHhccccCCCCC-CEEEEccCHHH
Q 038192 490 EKVKKYNSANGIESYEIQWISKASAAQRAGRAGRTAP-GHCYRLYSSAV 537 (764)
Q Consensus 490 ~K~~~yd~~~~~~~l~~~~iSkasa~QR~GRAGR~~~-G~cyrLys~~~ 537 (764)
+....+ |.|.+++.||+|||||.+. |.||.+++...
T Consensus 344 p~~~~~------------~~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~ 380 (412)
T 3fht_A 344 PVDKDG------------NPDNETYLHRIGRTGRFGKRGLAVNMVDSKH 380 (412)
T ss_dssp CBCSSS------------SBCHHHHHHHHTTSSCTTCCEEEEEEECSHH
T ss_pred CCCCCC------------CcchheeecccCcccCCCCCceEEEEEcChh
Confidence 543322 4678999999999999876 99999998654
No 11
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=99.97 E-value=1.8e-30 Score=285.80 Aligned_cols=304 Identities=18% Similarity=0.245 Sum_probs=215.5
Q ss_pred CchhhHHHHHHHHHcC--CeEEEEecCCCCccccHHHHHHHhccCCCCCCCCCceEEEecccHHHHHHHHHHHHHHhCCC
Q 038192 35 PIVMMEQEIMEAVNDN--SAVIICGETGCGKTTQVPQFLFEAGFGSNRCSSRSGRIGVTQPRRVAVLATAKRVAFELGLH 112 (764)
Q Consensus 35 Pi~~~~~~Il~~l~~~--~vviI~GeTGSGKTTqvPq~Lle~~~~~~~~~~~~~~Ii~tQPRRiaAisvA~RVa~E~g~~ 112 (764)
..+.+|.+.++.+.++ +.++++++||||||+++..++++...... ...++++..|+|.+|.++++++. +++..
T Consensus 27 ~~~~~Q~~~i~~~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~~----~~~~~lil~P~~~L~~q~~~~~~-~~~~~ 101 (395)
T 3pey_A 27 KPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSLTMLTRVNPED----ASPQAICLAPSRELARQTLEVVQ-EMGKF 101 (395)
T ss_dssp SCCHHHHHHHHHHHCSSCCCEEEECCTTSCHHHHHHHHHHHHCCTTC----CSCCEEEECSSHHHHHHHHHHHH-HHTTT
T ss_pred CCCHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHHhccCC----CCccEEEECCCHHHHHHHHHHHH-HHhcc
Confidence 3455666777777776 78999999999999999999988754322 13589999999999999999665 45555
Q ss_pred CCCEeeEEeccC--cccCCCceEEEEchHHHHHHHHH-----------HHHHHHHHHh-hcccc---C-CccCCCCceEE
Q 038192 113 LGKEVGFQVRHD--KKIGDSCSIKFMTDGILLRELKA-----------LYEKQQQLLR-SGQCI---E-PKDRVFPLKLI 174 (764)
Q Consensus 113 lG~~VGY~ir~e--~~~s~~t~I~f~T~GiLLr~l~~-----------i~de~~~~l~-~~~~~---~-~~~~~~~lKlI 174 (764)
.+..++...... .....+++|+|+|+|.|++.+.. |+||+|.+.. .++.. . .....++.++|
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIiDEah~~~~~~~~~~~~~~~~~~~~~~~~~i 181 (395)
T 3pey_A 102 TKITSQLIVPDSFEKNKQINAQVIVGTPGTVLDLMRRKLMQLQKIKIFVLDEADNMLDQQGLGDQCIRVKRFLPKDTQLV 181 (395)
T ss_dssp SCCCEEEESTTSSCTTSCBCCSEEEECHHHHHHHHHTTCBCCTTCCEEEEETHHHHHHSTTHHHHHHHHHHTSCTTCEEE
T ss_pred cCeeEEEEecCchhhhccCCCCEEEEcHHHHHHHHHcCCcccccCCEEEEEChhhhcCccccHHHHHHHHHhCCCCcEEE
Confidence 555555544332 23344789999999999998843 5699987665 22211 1 11223578999
Q ss_pred Eeecccch--hhhccccCCCCCCCeeeeCCcccc---eeEEecCCCchhhHHHHHHHHHHHHhhcCCCCCeEEecCCHHH
Q 038192 175 LMSATLRV--EDFISGGRLFRNPPIIEVPTRQFP---VTVHFSKRTEIVDYIGQAYKKVMSIHKRLPQGGILVFVTGQRE 249 (764)
Q Consensus 175 LMSATl~~--~~f~~~~~~f~~~~vi~i~gr~~p---V~~~y~~~~~~~d~l~~~~~~v~~i~~~~~~g~ilvF~~g~~~ 249 (764)
+||||+.. ..+.. .++.+...+.+.....+ +...|..... .......+..+....+.+.+|||+++...
T Consensus 182 ~~SAT~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~lvf~~~~~~ 255 (395)
T 3pey_A 182 LFSATFADAVRQYAK--KIVPNANTLELQTNEVNVDAIKQLYMDCKN----EADKFDVLTELYGLMTIGSSIIFVATKKT 255 (395)
T ss_dssp EEESCCCHHHHHHHH--HHSCSCEEECCCGGGCSCTTEEEEEEECSS----HHHHHHHHHHHHTTTTSSEEEEECSCHHH
T ss_pred EEEecCCHHHHHHHH--HhCCCCeEEEccccccccccccEEEEEcCc----hHHHHHHHHHHHHhccCCCEEEEeCCHHH
Confidence 99999954 33332 45555555555444332 2333322111 11122233344444566789999999888
Q ss_pred HHHHHHHHHHHHHHhhhhccccccCCccccCCCCCccccchhHHhHHHHHhhcCcccccccccCCCCCcccccCcccccc
Q 038192 250 VEYLCSKLRKASKQLLVNSSKENKGNQVVADSEPNATKDINMKEINEAFEIQGYSTEQQTDRFSSYDEDQFDIDDNELDA 329 (764)
Q Consensus 250 ie~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~ 329 (764)
++.+++.|++
T Consensus 256 ~~~l~~~l~~---------------------------------------------------------------------- 265 (395)
T 3pey_A 256 ANVLYGKLKS---------------------------------------------------------------------- 265 (395)
T ss_dssp HHHHHHHHHH----------------------------------------------------------------------
T ss_pred HHHHHHHHHh----------------------------------------------------------------------
Confidence 8877666642
Q ss_pred ccCccchhhhhhccchhhhhhhcCCCCCCCCcccccccchhhhhHHHHHHhhcCCCCCCCccccCCCCCCCCcCCCCCCC
Q 038192 330 LSDSETESETEILGEDEKLVEQKCPMDGDDPVDVLKENWSLGSLKLAFEVLSGKNASGPSSQMKLSTPAIPEQCTELPPT 409 (764)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilvfl~g~~~i~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 409 (764)
T Consensus 266 -------------------------------------------------------------------------------- 265 (395)
T 3pey_A 266 -------------------------------------------------------------------------------- 265 (395)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCCCCCccccccCcccCCCCCeEEEecCCCCCHHHHHhhhccCCCCceEEEEecCcccccCCCCCeEEEEeCCc
Q 038192 410 PTPEQCPELSSPDVEKMGDNKRAGVGALCVLPLYAMLPAAAQLRVFEDVKEGERLVVVSTNVAETSLTIPGIKYVVDTGR 489 (764)
Q Consensus 410 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~pLHs~l~~~eQ~~vf~~~~~g~rKVIlsTNIAEtSITIpdV~~VID~G~ 489 (764)
.++.+..+||+++..+|.++++.|.+|..+|+|||+++++||+||+|.+||+.+.
T Consensus 266 -------------------------~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~~~~Vi~~~~ 320 (395)
T 3pey_A 266 -------------------------EGHEVSILHGDLQTQERDRLIDDFREGRSKVLITTNVLARGIDIPTVSMVVNYDL 320 (395)
T ss_dssp -------------------------TTCCCEEECTTSCHHHHHHHHHHHHTTSCCEEEECGGGSSSCCCTTEEEEEESSC
T ss_pred -------------------------cCCcEEEeCCCCCHHHHHHHHHHHHCCCCCEEEECChhhcCCCcccCCEEEEcCC
Confidence 0134678899999999999999999999999999999999999999999998554
Q ss_pred ccceeeccCCCccccceeeccHHhHHHhccccCCCCC-CEEEEccCHH
Q 038192 490 EKVKKYNSANGIESYEIQWISKASAAQRAGRAGRTAP-GHCYRLYSSA 536 (764)
Q Consensus 490 ~K~~~yd~~~~~~~l~~~~iSkasa~QR~GRAGR~~~-G~cyrLys~~ 536 (764)
++ +...+.|.+++.||+|||||.+. |.|+.+++..
T Consensus 321 p~------------~~~~~~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~ 356 (395)
T 3pey_A 321 PT------------LANGQADPATYIHRIGRTGRFGRKGVAISFVHDK 356 (395)
T ss_dssp CB------------CTTSSBCHHHHHHHHTTSSCTTCCEEEEEEECSH
T ss_pred CC------------CCcCCCCHHHhhHhccccccCCCCceEEEEEech
Confidence 32 23346899999999999999976 9999999854
No 12
>3i4u_A ATP-dependent RNA helicase DHX8; splicing, ATP-binding, hydrolase, mRNA processing, splicing, nucleotide-binding, nucleus, phosphoprotein, SPLI; 2.10A {Homo sapiens}
Probab=99.97 E-value=5.6e-31 Score=276.72 Aligned_cols=151 Identities=25% Similarity=0.382 Sum_probs=131.6
Q ss_pred CCCCCC-CCCCCHHHHHHHHHHHHHcccccCCCCccHHHHHHhcCCCChHHHHHHHHHHhhhhhhhhhhhccchhhhHHh
Q 038192 570 VSNFPF-PTPPEVTALVEAERCLKALEALDSNGRLTALGKAMAHYPMSPRHSRMLLTLIQTMKVKSYARANLVLGYGVAA 648 (764)
Q Consensus 570 ~~~f~~-~~pP~~~~i~~ai~~L~~lgAld~~~~LT~LG~~la~LPvdp~lgkmLl~~~~~~~~~~~~~~~~~l~~~~~i 648 (764)
+..|+| +|||+.+++.+|++.|..|||||++|+||++|+.|++||+||++||||+.|..+ +|+.++++|
T Consensus 5 ~~~l~~~ldpP~~~~l~~A~~~L~~LgAld~~g~lT~lG~~ma~lPl~P~lakmLl~a~~~----------~c~~~~l~i 74 (270)
T 3i4u_A 5 GPEFELGTRGSPMETLITAMEQLYTLGALDDEGLLTRLGRRMAEFPLEPMLCKMLIMSVHL----------GCSEEMLTI 74 (270)
T ss_dssp ---------CCHHHHHHHHHHHHHHHTSBCTTSCBCHHHHHHTTSCSCHHHHHHHHHHHHT----------TCHHHHHHH
T ss_pred hhccccCCCCcCHHHHHHHHHHHHHcCCcCCCCCccHHHHHHHhCCCCHHHHHHHHHhhhc----------CCHHHHHHH
Confidence 457788 999999999999999999999999999999999999999999999999998642 588899999
Q ss_pred hhcccCCcceeeccccccCCCCCchhhhhcccCCCCChhhHHHHhhhhhHHHHHHHHHhhcCCCCCcHHHHHHHHHHHHh
Q 038192 649 AAALSVSNPFVLQLEGTQTNSNDSELEERDNALDSEDPMCRQEKLGKRKLKEVAKLSHAKFSNPTSDVLTVAYALQCFEL 728 (764)
Q Consensus 649 aA~ls~~~~F~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~f~~~~sD~lt~ln~~~~~~~ 728 (764)
||+||+++||+.|.+. +++++.+|++|.++.|||+|++|+|++|..
T Consensus 75 aA~Ls~~~~f~~p~~~----------------------------------~~~a~~~~~~f~~~~sD~ltlLn~~~~~~~ 120 (270)
T 3i4u_A 75 VSMLSVQNVFYRPKDK----------------------------------QALADQKKAKFHQTEGDHLTLLAVYNSWKN 120 (270)
T ss_dssp HHHHTSSCCBCCCGGG----------------------------------HHHHHHHHHTTCBTTBHHHHHHHHHHHHHH
T ss_pred HHHHCCCccccCCchh----------------------------------HHHHHHHHHHccCCCChHHHHHHHHHHHHH
Confidence 9999999999987431 245677899999999999999999999998
Q ss_pred cCCcHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcC
Q 038192 729 SKSPVEFCNEYALHLKTMEEMSKLRKQLLHLLFNQN 764 (764)
Q Consensus 729 ~~~~~~~C~~~~l~~~~l~~i~~ir~QL~~~l~~~g 764 (764)
++...+||++||||+++|+++.++|+||.++|.+.|
T Consensus 121 ~~~~~~wC~~~fL~~~~l~~~~~ir~QL~~~l~~~~ 156 (270)
T 3i4u_A 121 NKFSNPWCYENFIQARSLRRAQDIRKQMLGIMDRHK 156 (270)
T ss_dssp TTTCHHHHHHTTBCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred cCchhhHHHHhcCCHHHHHHHHHHHHHHHHHHHHcC
Confidence 888899999999999999999999999999998764
No 13
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=99.97 E-value=9.7e-32 Score=329.69 Aligned_cols=400 Identities=16% Similarity=0.226 Sum_probs=251.4
Q ss_pred CCchhhHHHHHHHHHcCCeEEEEecCCCCccccHHHHHHHhccCCCCCCCCCceEEEecccHHHHHHHHHHHHHHhCCCC
Q 038192 34 LPIVMMEQEIMEAVNDNSAVIICGETGCGKTTQVPQFLFEAGFGSNRCSSRSGRIGVTQPRRVAVLATAKRVAFELGLHL 113 (764)
Q Consensus 34 LPi~~~~~~Il~~l~~~~vviI~GeTGSGKTTqvPq~Lle~~~~~~~~~~~~~~Ii~tQPRRiaAisvA~RVa~E~g~~l 113 (764)
.+...+|.+++.++.+++.++|+|+||||||+. .++.+...... ..+++|+.|+|.+|.++++++.+..+
T Consensus 38 f~l~~~Q~~aI~~il~g~~vlv~apTGsGKTlv-~~~~i~~~~~~------g~~vlvl~PtraLa~Q~~~~l~~~~~--- 107 (997)
T 4a4z_A 38 FELDTFQKEAVYHLEQGDSVFVAAHTSAGKTVV-AEYAIAMAHRN------MTKTIYTSPIKALSNQKFRDFKETFD--- 107 (997)
T ss_dssp SCCCHHHHHHHHHHHTTCEEEEECCTTSCSHHH-HHHHHHHHHHT------TCEEEEEESCGGGHHHHHHHHHTTC----
T ss_pred CCCCHHHHHHHHHHHcCCCEEEEECCCCcHHHH-HHHHHHHHHhc------CCeEEEEeCCHHHHHHHHHHHHHHcC---
Confidence 346889999999999999999999999999974 22222222221 15899999999999999999887553
Q ss_pred CCEeeEEeccCcccCCCceEEEEchHHHHHHHHH-----------HHHHHHHHHhhccccCC----ccCCCCceEEEeec
Q 038192 114 GKEVGFQVRHDKKIGDSCSIKFMTDGILLRELKA-----------LYEKQQQLLRSGQCIEP----KDRVFPLKLILMSA 178 (764)
Q Consensus 114 G~~VGY~ir~e~~~s~~t~I~f~T~GiLLr~l~~-----------i~de~~~~l~~~~~~~~----~~~~~~lKlILMSA 178 (764)
|..||.-.. +......++|+|||+|+|++++.. |+||+|.+...++.... ....++.++|+|||
T Consensus 108 ~~~v~~l~G-~~~~~~~~~IlV~Tpe~L~~~l~~~~~~l~~l~lvViDEaH~l~d~~~g~~~e~ii~~l~~~v~iIlLSA 186 (997)
T 4a4z_A 108 DVNIGLITG-DVQINPDANCLIMTTEILRSMLYRGADLIRDVEFVIFDEVHYVNDQDRGVVWEEVIIMLPQHVKFILLSA 186 (997)
T ss_dssp -CCEEEECS-SCEECTTSSEEEEEHHHHHHHHHHTCSGGGGEEEEEECCTTCCCTTCTTCCHHHHHHHSCTTCEEEEEEC
T ss_pred CCeEEEEeC-CCccCCCCCEEEECHHHHHHHHHhCchhhcCCCEEEEECcccccccchHHHHHHHHHhcccCCCEEEEcC
Confidence 345665333 444566789999999999998843 56888866554432111 12346799999999
Q ss_pred cc-chhhhccccCCCC-----CCCeeeeCCcccceeEEecCCCch-------hhHHH-----------------------
Q 038192 179 TL-RVEDFISGGRLFR-----NPPIIEVPTRQFPVTVHFSKRTEI-------VDYIG----------------------- 222 (764)
Q Consensus 179 Tl-~~~~f~~~~~~f~-----~~~vi~i~gr~~pV~~~y~~~~~~-------~d~l~----------------------- 222 (764)
|+ +...|. .+++ .+.++..++|.+|++.++.....+ ..+..
T Consensus 187 T~~n~~ef~---~~l~~~~~~~~~vi~~~~r~~pl~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 263 (997)
T 4a4z_A 187 TVPNTYEFA---NWIGRTKQKNIYVISTPKRPVPLEINIWAKKELIPVINQNSEFLEANFRKHKEILNGESAKGAPSKTD 263 (997)
T ss_dssp CCTTHHHHH---HHHHHHHTCCEEEEECSSCSSCEEEEEEETTEEEEEECTTCCBCHHHHHHHHHHHC------------
T ss_pred CCCChHHHH---HHHhcccCCceEEEecCCCCccceEEEecCCcchhcccchhhhhHHHHHHHHHHhhcccccccccccc
Confidence 99 788887 4553 356788899999998665321000 00000
Q ss_pred ----------------------------------------------------------HHHHHHHHHhhcCCCCCeEEec
Q 038192 223 ----------------------------------------------------------QAYKKVMSIHKRLPQGGILVFV 244 (764)
Q Consensus 223 ----------------------------------------------------------~~~~~v~~i~~~~~~g~ilvF~ 244 (764)
..+..+.........+.+|||+
T Consensus 264 ~~~~~~~~~~~~~~~~~rg~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~l~~~~~~~~IVF~ 343 (997)
T 4a4z_A 264 NGRGGSTARGGRGGSNTRDGRGGRGNSTRGGANRGGSRGAGAIGSNKRKFFTQDGPSKKTWPEIVNYLRKRELLPMVVFV 343 (997)
T ss_dssp -----------------------------------------------------CCCCTTHHHHHHHHHHHTTCCSEEEEC
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhHHHHHHHHHHhCCCCCEEEEE
Confidence 0122333334444567889999
Q ss_pred CCHHHHHHHHHHHHHHHHHhhhhccccccCCccccCCCCCccccchhHHhHHHHHhhcCcccccccccCCCCCcccccCc
Q 038192 245 TGQREVEYLCSKLRKASKQLLVNSSKENKGNQVVADSEPNATKDINMKEINEAFEIQGYSTEQQTDRFSSYDEDQFDIDD 324 (764)
Q Consensus 245 ~g~~~ie~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~ 324 (764)
+++..++.++..|... +-...-+...+...+... .....
T Consensus 344 ~sr~~~e~la~~L~~~-----------------------~~~~~~e~~~i~~~~~~~----------~~~l~-------- 382 (997)
T 4a4z_A 344 FSKKRCEEYADWLEGI-----------------------NFCNNKEKSQIHMFIEKS----------ITRLK-------- 382 (997)
T ss_dssp SCHHHHHHHHHTTTTC-----------------------CCCCHHHHHHHHHHHHHH----------HTTSC--------
T ss_pred CCHHHHHHHHHHHhcC-----------------------CCCCHHHHHHHHHHHHHH----------HHhcc--------
Confidence 9999888887666320 000000001111111000 00000
Q ss_pred cccccccCccchhhhhhccchhhhhhhcCCCCCCCCcccccccchhhhhHHHHHHhhcCCCCCCCccccCCCCCCCCcCC
Q 038192 325 NELDALSDSETESETEILGEDEKLVEQKCPMDGDDPVDVLKENWSLGSLKLAFEVLSGKNASGPSSQMKLSTPAIPEQCT 404 (764)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilvfl~g~~~i~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 404 (764)
..+.. +|. +......
T Consensus 383 ------------------~~d~~----------------l~~------~~~l~~~------------------------- 397 (997)
T 4a4z_A 383 ------------------KEDRD----------------LPQ------ILKTRSL------------------------- 397 (997)
T ss_dssp ------------------HHHHT----------------CHH------HHHHHHH-------------------------
T ss_pred ------------------hhhhc----------------chh------HHHHHHH-------------------------
Confidence 00000 000 0000000
Q ss_pred CCCCCCCCCCCCCCCCCccccccCcccCCCCCeEEEecCCCCCHHHHHhhhccCCCCceEEEEecCcccccCCCCCeEEE
Q 038192 405 ELPPTPTPEQCPELSSPDVEKMGDNKRAGVGALCVLPLYAMLPAAAQLRVFEDVKEGERLVVVSTNVAETSLTIPGIKYV 484 (764)
Q Consensus 405 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~pLHs~l~~~eQ~~vf~~~~~g~rKVIlsTNIAEtSITIpdV~~V 484 (764)
....|.++||+|++.+|..+++.|..|..+||+|||++++||+||+ ++|
T Consensus 398 ------------------------------l~~gi~~~H~gl~~~~R~~v~~~F~~G~~kVLvAT~~~a~GIDiP~-~~V 446 (997)
T 4a4z_A 398 ------------------------------LERGIAVHHGGLLPIVKELIEILFSKGFIKVLFATETFAMGLNLPT-RTV 446 (997)
T ss_dssp ------------------------------HTTTEEEECTTSCHHHHHHHHHHHHTTCCSEEEECTHHHHSCCCCC-SEE
T ss_pred ------------------------------hhcCeeeecCCCCHHHHHHHHHHHHCCCCcEEEEchHhhCCCCCCC-ceE
Confidence 1224788999999999999999999999999999999999999999 566
Q ss_pred EeCCcccceeeccCCCccccceeeccHHhHHHhccccCCCC---CCEEEEccCH-----HHhcccCCCCCCCcccccC--
Q 038192 485 VDTGREKVKKYNSANGIESYEIQWISKASAAQRAGRAGRTA---PGHCYRLYSS-----AVFNNILPDFSCAEISKVP-- 554 (764)
Q Consensus 485 ID~G~~K~~~yd~~~~~~~l~~~~iSkasa~QR~GRAGR~~---~G~cyrLys~-----~~~~~~l~~~~~PEI~r~~-- 554 (764)
|..+..| ||.. ...|+|.++|.||+|||||.+ .|+||.++.. ..+..++ ...|+.++..
T Consensus 447 Vi~~~~k---~dg~------~~~~~s~~~y~Qr~GRAGR~G~~~~G~vi~l~~~~~~~~~~~~~~i--~~~~~~l~s~~~ 515 (997)
T 4a4z_A 447 IFSSIRK---HDGN------GLRELTPGEFTQMAGRAGRRGLDSTGTVIVMAYNSPLSIATFKEVT--MGVPTRLQSQFR 515 (997)
T ss_dssp EESCSEE---EETT------EEEECCHHHHHHHHGGGCCTTTCSSEEEEEECCSSCCCHHHHHHHH--HSCCCCCCCCCC
T ss_pred EEecccc---ccCc------cCCCCCHHHHhHHhcccccCCCCcceEEEEecCCCcchHHHHHHHh--cCCCcccccccc
Confidence 6666655 5543 235999999999999999987 6999999942 2333221 1245555542
Q ss_pred ----hhhHHHHHHHcCCCCCCCCCCCCCCCHHHHHHHHHHHHHcc
Q 038192 555 ----VDGVVLLMKSMNIDKVSNFPFPTPPEVTALVEAERCLKALE 595 (764)
Q Consensus 555 ----L~~~~L~lk~l~~~~~~~f~~~~pP~~~~i~~ai~~L~~lg 595 (764)
+.--+|+++.+++.++..+.|.+.|....+....+.|..++
T Consensus 516 ~~ynm~l~ll~~~~~~~~~~l~~sf~~~~~~~~~~~~~~~l~~l~ 560 (997)
T 4a4z_A 516 LTYNMILNLLRIEALRVEEMIKYSFSENAKETLQPEHEKQIKVLQ 560 (997)
T ss_dssp CCHHHHHHHHHHCTTHHHHHHHTSHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHhhccccHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 23333444455555555666666666666655555555444
No 14
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=99.97 E-value=2.5e-31 Score=311.18 Aligned_cols=287 Identities=18% Similarity=0.174 Sum_probs=212.1
Q ss_pred hhcCCCchhhHHHHHHHHHcCCeEEEEecCCCCccccHHHHHHHhccCCCCCCCCCceEEEecccHHHHHHHHHHHHHHh
Q 038192 30 NRKDLPIVMMEQEIMEAVNDNSAVIICGETGCGKTTQVPQFLFEAGFGSNRCSSRSGRIGVTQPRRVAVLATAKRVAFEL 109 (764)
Q Consensus 30 ~R~~LPi~~~~~~Il~~l~~~~vviI~GeTGSGKTTqvPq~Lle~~~~~~~~~~~~~~Ii~tQPRRiaAisvA~RVa~E~ 109 (764)
.|+.|||+++ . +..+.+++.++++|+||||||+++...+++..... ..+++|+.|+|.+|.++++++.
T Consensus 169 ~~~~lpiq~~--~-i~~l~~g~dvlv~a~TGSGKT~~~~lpil~~l~~~------~~~vLvl~PtreLa~Qi~~~l~--- 236 (618)
T 2whx_A 169 ERIGEPDYEV--D-EDIFRKKRLTIMDLHPGAGKTKRILPSIVREALKR------RLRTLILAPTRVVAAEMEEALR--- 236 (618)
T ss_dssp CCCCCCCCCC--C-GGGGSTTCEEEECCCTTSSTTTTHHHHHHHHHHHT------TCCEEEEESSHHHHHHHHHHTT---
T ss_pred cccCCCcccc--C-HHHHhcCCeEEEEcCCCCCHHHHHHHHHHHHHHhC------CCeEEEEcChHHHHHHHHHHhc---
Confidence 4888999887 3 88899999999999999999999765555543322 1589999999999988887553
Q ss_pred CCCCCCEeeEEecc-CcccCCCceEEEEchHHHHHHHHH----------HHHHHHHHHhhcc------ccCCccCCCCce
Q 038192 110 GLHLGKEVGFQVRH-DKKIGDSCSIKFMTDGILLRELKA----------LYEKQQQLLRSGQ------CIEPKDRVFPLK 172 (764)
Q Consensus 110 g~~lG~~VGY~ir~-e~~~s~~t~I~f~T~GiLLr~l~~----------i~de~~~~l~~~~------~~~~~~~~~~lK 172 (764)
|..|||+++. +...++.+.+.++|.|.|.+++.. |+||+|++ ..++ +.... .+++.+
T Consensus 237 ----~~~v~~~~~~l~~~~tp~~~i~~~t~~~l~~~l~~~~~l~~~~~iViDEah~~-~~~~~~~~~~i~~~l-~~~~~q 310 (618)
T 2whx_A 237 ----GLPIRYQTPAVKSDHTGREIVDLMCHATFTTRLLSSTRVPNYNLIVMDEAHFT-DPCSVAARGYISTRV-EMGEAA 310 (618)
T ss_dssp ----TSCEEECCTTSSCCCCSSSCEEEEEHHHHHHHHHHCSSCCCCSEEEEESTTCC-SHHHHHHHHHHHHHH-HHTSCE
T ss_pred ----CCceeEecccceeccCCCceEEEEChHHHHHHHhccccccCCeEEEEECCCCC-CccHHHHHHHHHHHh-cccCcc
Confidence 5668898876 455677889999999999987753 56888864 1111 11111 126789
Q ss_pred EEEeecccchhhhccccCCCC-CCCeeeeCCcccceeEEecCCCchhhHHHHHHHHHHHHhhcCCCCCeEEecCCHHHHH
Q 038192 173 LILMSATLRVEDFISGGRLFR-NPPIIEVPTRQFPVTVHFSKRTEIVDYIGQAYKKVMSIHKRLPQGGILVFVTGQREVE 251 (764)
Q Consensus 173 lILMSATl~~~~f~~~~~~f~-~~~vi~i~gr~~pV~~~y~~~~~~~d~l~~~~~~v~~i~~~~~~g~ilvF~~g~~~ie 251 (764)
+|+||||++... . .++. +++.+.++.+ +|.+. +...+. .+. . ..+.+|||+++.+.++
T Consensus 311 ~il~SAT~~~~~-~---~~~~~~~~~~~v~~~-~~~~~-------~~~ll~----~l~---~--~~~~~LVF~~s~~~a~ 369 (618)
T 2whx_A 311 AIFMTATPPGST-D---PFPQSNSPIEDIERE-IPERS-------WNTGFD----WIT---D--YQGKTVWFVPSIKAGN 369 (618)
T ss_dssp EEEECSSCTTCC-C---SSCCCSSCEEEEECC-CCSSC-------CSSSCH----HHH---H--CCSCEEEECSSHHHHH
T ss_pred EEEEECCCchhh-h---hhhccCCceeeeccc-CCHHH-------HHHHHH----HHH---h--CCCCEEEEECChhHHH
Confidence 999999996542 1 2443 3555555543 22211 011111 111 1 3678999999999998
Q ss_pred HHHHHHHHHHHHhhhhccccccCCccccCCCCCccccchhHHhHHHHHhhcCcccccccccCCCCCcccccCcccccccc
Q 038192 252 YLCSKLRKASKQLLVNSSKENKGNQVVADSEPNATKDINMKEINEAFEIQGYSTEQQTDRFSSYDEDQFDIDDNELDALS 331 (764)
Q Consensus 252 ~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~ 331 (764)
.+++.|++
T Consensus 370 ~l~~~L~~------------------------------------------------------------------------ 377 (618)
T 2whx_A 370 DIANCLRK------------------------------------------------------------------------ 377 (618)
T ss_dssp HHHHHHHH------------------------------------------------------------------------
T ss_pred HHHHHHHH------------------------------------------------------------------------
Confidence 88777643
Q ss_pred CccchhhhhhccchhhhhhhcCCCCCCCCcccccccchhhhhHHHHHHhhcCCCCCCCccccCCCCCCCCcCCCCCCCCC
Q 038192 332 DSETESETEILGEDEKLVEQKCPMDGDDPVDVLKENWSLGSLKLAFEVLSGKNASGPSSQMKLSTPAIPEQCTELPPTPT 411 (764)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilvfl~g~~~i~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 411 (764)
T Consensus 378 -------------------------------------------------------------------------------- 377 (618)
T 2whx_A 378 -------------------------------------------------------------------------------- 377 (618)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCCCccccccCcccCCCCCeEEEecCCCCCHHHHHhhhccCCCCceEEEEecCcccccCCCCCeEEEEeCCccc
Q 038192 412 PEQCPELSSPDVEKMGDNKRAGVGALCVLPLYAMLPAAAQLRVFEDVKEGERLVVVSTNVAETSLTIPGIKYVVDTGREK 491 (764)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~pLHs~l~~~eQ~~vf~~~~~g~rKVIlsTNIAEtSITIpdV~~VID~G~~K 491 (764)
.++.+..+||. +|.++++.|++|..+||||||+||+||||| |++|||+|+++
T Consensus 378 -----------------------~g~~v~~lhg~----~R~~~l~~F~~g~~~VLVaTdv~~rGiDi~-v~~VId~g~~~ 429 (618)
T 2whx_A 378 -----------------------SGKRVIQLSRK----TFDTEYPKTKLTDWDFVVTTDISEMGANFR-AGRVIDPRRCL 429 (618)
T ss_dssp -----------------------TTCCEEEECTT----THHHHTTHHHHSCCSEEEECGGGGTTCCCC-CSEEEECCEEE
T ss_pred -----------------------cCCcEEEEChH----HHHHHHHhhcCCCcEEEEECcHHHcCcccC-ceEEEECccee
Confidence 01347778984 678899999999999999999999999997 99999999988
Q ss_pred ceee--ccCCCccccceeeccHHhHHHhccccCCCC--CCEEEEccCH
Q 038192 492 VKKY--NSANGIESYEIQWISKASAAQRAGRAGRTA--PGHCYRLYSS 535 (764)
Q Consensus 492 ~~~y--d~~~~~~~l~~~~iSkasa~QR~GRAGR~~--~G~cyrLys~ 535 (764)
...+ +...++......|+|.++|.||+|||||.+ +|.||.++++
T Consensus 430 ~P~~~~~~~~~~~i~~d~P~s~~~yiQR~GRaGR~g~~~G~ai~l~~~ 477 (618)
T 2whx_A 430 KPVILTDGPERVILAGPIPVTPASAAQRRGRIGRNPAQEDDQYVFSGD 477 (618)
T ss_dssp EEEEECSSSCEEEEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEECSC
T ss_pred cceecccCCCceEEcccccCCHHHHHHhccccCCCCCCCCeEEEEccC
Confidence 7765 444556677889999999999999999996 7999999983
No 15
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=99.97 E-value=1.9e-31 Score=313.74 Aligned_cols=147 Identities=18% Similarity=0.243 Sum_probs=112.4
Q ss_pred eEEEecCCCCCHHHHHhhhccCCC--CceEEEEecCcccccCCCCCeEEEEeCCcccceeeccCCCccccceeeccHHhH
Q 038192 437 LCVLPLYAMLPAAAQLRVFEDVKE--GERLVVVSTNVAETSLTIPGIKYVVDTGREKVKKYNSANGIESYEIQWISKASA 514 (764)
Q Consensus 437 ~~i~pLHs~l~~~eQ~~vf~~~~~--g~rKVIlsTNIAEtSITIpdV~~VID~G~~K~~~yd~~~~~~~l~~~~iSkasa 514 (764)
+.+.++||+|++++|.++.+.|.+ |.++||||||++|+|||| +|++|||+|..|. .||+..+. ...|+|.+++
T Consensus 345 ~~v~~lHG~L~~~~R~~~~~~F~~~~g~~~VLVATdi~e~GlDi-~v~~VI~~~~~k~-~~~~~G~~---~~~p~s~~~~ 419 (677)
T 3rc3_A 345 LESAVIYGSLPPGTKLAQAKKFNDPNDPCKILVATDAIGMGLNL-SIRRIIFYSLIKP-SINEKGER---ELEPITTSQA 419 (677)
T ss_dssp CCCEEECTTSCHHHHHHHHHHHHCTTSSCCEEEECGGGGSSCCC-CBSEEEESCSBC---------------CBCCHHHH
T ss_pred CCeeeeeccCCHHHHHHHHHHHHccCCCeEEEEeCcHHHCCcCc-CccEEEECCcccc-ccccCCcc---ccccCCHHHH
Confidence 347889999999988777777766 899999999999999999 9999999999998 88887544 2569999999
Q ss_pred HHhccccCCCC----CCEEEEccCHH--HhcccCCCCCCCcccccChhhHHHHHHHcCCCCCCCCCCCCCCCHHHHHHHH
Q 038192 515 AQRAGRAGRTA----PGHCYRLYSSA--VFNNILPDFSCAEISKVPVDGVVLLMKSMNIDKVSNFPFPTPPEVTALVEAE 588 (764)
Q Consensus 515 ~QR~GRAGR~~----~G~cyrLys~~--~~~~~l~~~~~PEI~r~~L~~~~L~lk~l~~~~~~~f~~~~pP~~~~i~~ai 588 (764)
.||+|||||.+ +|.||+++++. .+.+ +.....|+|.+.+|....++++.++.. .+ ...+...+
T Consensus 420 ~QR~GRAGR~g~~g~~G~v~~l~~~d~~~~~~-~~~~~~~~i~~~~l~p~~~~l~~~~~~------l~----~~~l~ell 488 (677)
T 3rc3_A 420 LQIAGRAGRFSSRFKEGEVTTMNHEDLSLLKE-ILKRPVDPIRAAGLHPTAEQIEMFAYH------LP----DATLSNLI 488 (677)
T ss_dssp HHHHTTBTCTTSSCSSEEEEESSTTHHHHHHH-HHHSCCCCCCCEEECCCHHHHHHHHHH------ST----TSCHHHHH
T ss_pred HHHhcCCCCCCCCCCCEEEEEEecchHHHHHH-HHhcCcchhhhccCCChHHHHHHHhcc------CC----cchHHHHH
Confidence 99999999999 58999999987 5544 557889999999998888999887621 11 12255566
Q ss_pred HHHHHcccccC
Q 038192 589 RCLKALEALDS 599 (764)
Q Consensus 589 ~~L~~lgAld~ 599 (764)
+.+..+..+|.
T Consensus 489 ~~l~~~~~vd~ 499 (677)
T 3rc3_A 489 DIFVDFSQVDG 499 (677)
T ss_dssp HHHHHHCBCCT
T ss_pred HHHHHhhcccc
Confidence 66667776664
No 16
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=99.97 E-value=8.6e-30 Score=286.94 Aligned_cols=299 Identities=17% Similarity=0.274 Sum_probs=207.5
Q ss_pred CchhhHHHHHHHHHcCCeEEEEecCCCCccccHHHHHHHhccCCCC-CCCCCceEEEecccHHHHHHHHHHHHHHhCCCC
Q 038192 35 PIVMMEQEIMEAVNDNSAVIICGETGCGKTTQVPQFLFEAGFGSNR-CSSRSGRIGVTQPRRVAVLATAKRVAFELGLHL 113 (764)
Q Consensus 35 Pi~~~~~~Il~~l~~~~vviI~GeTGSGKTTqvPq~Lle~~~~~~~-~~~~~~~Ii~tQPRRiaAisvA~RVa~E~g~~l 113 (764)
|. ..|.+.+..+.+++.++++++||||||.++..++++....... ......+++|..|+|.+|.++++++. .++...
T Consensus 79 pt-~iQ~~ai~~i~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~-~~~~~~ 156 (434)
T 2db3_A 79 PT-PIQKCSIPVISSGRDLMACAQTGSGKTAAFLLPILSKLLEDPHELELGRPQVVIVSPTRELAIQIFNEAR-KFAFES 156 (434)
T ss_dssp CC-HHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHHSCCCCCTTCCSEEEECSSHHHHHHHHHHHH-HHTTTS
T ss_pred CC-HHHHHHHHHHhcCCCEEEECCCCCCchHHHHHHHHHHHHhcccccccCCccEEEEecCHHHHHHHHHHHH-HHhccC
Confidence 44 4455666777777889999999999999876666654322111 01123589999999999999988665 444444
Q ss_pred CCEeeEEeccCc------ccCCCceEEEEchHHHHHHHHH-----------HHHHHHHHHhhccccCC------ccCCCC
Q 038192 114 GKEVGFQVRHDK------KIGDSCSIKFMTDGILLRELKA-----------LYEKQQQLLRSGQCIEP------KDRVFP 170 (764)
Q Consensus 114 G~~VGY~ir~e~------~~s~~t~I~f~T~GiLLr~l~~-----------i~de~~~~l~~~~~~~~------~~~~~~ 170 (764)
+..++......+ ....+++|+++|+|+|++.+.. |+||+|+++..++...+ ....++
T Consensus 157 ~~~~~~~~gg~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~l~~~~~lVlDEah~~~~~gf~~~~~~i~~~~~~~~~ 236 (434)
T 2db3_A 157 YLKIGIVYGGTSFRHQNECITRGCHVVIATPGRLLDFVDRTFITFEDTRFVVLDEADRMLDMGFSEDMRRIMTHVTMRPE 236 (434)
T ss_dssp SCCCCEECTTSCHHHHHHHHTTCCSEEEECHHHHHHHHHTTSCCCTTCCEEEEETHHHHTSTTTHHHHHHHHHCTTSCSS
T ss_pred CcEEEEEECCCCHHHHHHHhhcCCCEEEEChHHHHHHHHhCCcccccCCeEEEccHhhhhccCcHHHHHHHHHhcCCCCC
Confidence 444554443332 1245789999999999998853 67999998877653211 123578
Q ss_pred ceEEEeecccch--hhhccccCCCCCCCeeeeCCc---ccceeEEecCCCchhhHHHHHHHHHHHHhhcCCCCCeEEecC
Q 038192 171 LKLILMSATLRV--EDFISGGRLFRNPPIIEVPTR---QFPVTVHFSKRTEIVDYIGQAYKKVMSIHKRLPQGGILVFVT 245 (764)
Q Consensus 171 lKlILMSATl~~--~~f~~~~~~f~~~~vi~i~gr---~~pV~~~y~~~~~~~d~l~~~~~~v~~i~~~~~~g~ilvF~~ 245 (764)
.++++||||+.. ..+.. .++.++..+.+... ...+...+..... .+-. ..+.++..... +++|||++
T Consensus 237 ~q~l~~SAT~~~~~~~~~~--~~l~~~~~i~~~~~~~~~~~i~~~~~~~~~-~~k~----~~l~~~l~~~~-~~~lVF~~ 308 (434)
T 2db3_A 237 HQTLMFSATFPEEIQRMAG--EFLKNYVFVAIGIVGGACSDVKQTIYEVNK-YAKR----SKLIEILSEQA-DGTIVFVE 308 (434)
T ss_dssp CEEEEEESCCCHHHHHHHH--TTCSSCEEEEESSTTCCCTTEEEEEEECCG-GGHH----HHHHHHHHHCC-TTEEEECS
T ss_pred ceEEEEeccCCHHHHHHHH--HhccCCEEEEeccccccccccceEEEEeCc-HHHH----HHHHHHHHhCC-CCEEEEEe
Confidence 899999999953 44443 56666555554321 2234433322111 1111 12223332223 34999999
Q ss_pred CHHHHHHHHHHHHHHHHHhhhhccccccCCccccCCCCCccccchhHHhHHHHHhhcCcccccccccCCCCCcccccCcc
Q 038192 246 GQREVEYLCSKLRKASKQLLVNSSKENKGNQVVADSEPNATKDINMKEINEAFEIQGYSTEQQTDRFSSYDEDQFDIDDN 325 (764)
Q Consensus 246 g~~~ie~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~ 325 (764)
+.+.++.+++.|.+
T Consensus 309 t~~~a~~l~~~L~~------------------------------------------------------------------ 322 (434)
T 2db3_A 309 TKRGADFLASFLSE------------------------------------------------------------------ 322 (434)
T ss_dssp SHHHHHHHHHHHHH------------------------------------------------------------------
T ss_pred CcHHHHHHHHHHHh------------------------------------------------------------------
Confidence 99888877766642
Q ss_pred ccccccCccchhhhhhccchhhhhhhcCCCCCCCCcccccccchhhhhHHHHHHhhcCCCCCCCccccCCCCCCCCcCCC
Q 038192 326 ELDALSDSETESETEILGEDEKLVEQKCPMDGDDPVDVLKENWSLGSLKLAFEVLSGKNASGPSSQMKLSTPAIPEQCTE 405 (764)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilvfl~g~~~i~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (764)
T Consensus 323 -------------------------------------------------------------------------------- 322 (434)
T 2db3_A 323 -------------------------------------------------------------------------------- 322 (434)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCCCCCCCCCccccccCcccCCCCCeEEEecCCCCCHHHHHhhhccCCCCceEEEEecCcccccCCCCCeEEEE
Q 038192 406 LPPTPTPEQCPELSSPDVEKMGDNKRAGVGALCVLPLYAMLPAAAQLRVFEDVKEGERLVVVSTNVAETSLTIPGIKYVV 485 (764)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~pLHs~l~~~eQ~~vf~~~~~g~rKVIlsTNIAEtSITIpdV~~VI 485 (764)
.++.+..+||++++.+|.++++.|+.|..+|+|||++|++||+||+|.+||
T Consensus 323 -----------------------------~~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~v~~rGlDi~~v~~VI 373 (434)
T 2db3_A 323 -----------------------------KEFPTTSIHGDRLQSQREQALRDFKNGSMKVLIATSVASRGLDIKNIKHVI 373 (434)
T ss_dssp -----------------------------TTCCEEEESTTSCHHHHHHHHHHHHTSSCSEEEECGGGTSSCCCTTCCEEE
T ss_pred -----------------------------CCCCEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEchhhhCCCCcccCCEEE
Confidence 123477899999999999999999999999999999999999999999999
Q ss_pred eCCcccceeeccCCCccccceeeccHHhHHHhccccCCCCC-CEEEEccCHH
Q 038192 486 DTGREKVKKYNSANGIESYEIQWISKASAAQRAGRAGRTAP-GHCYRLYSSA 536 (764)
Q Consensus 486 D~G~~K~~~yd~~~~~~~l~~~~iSkasa~QR~GRAGR~~~-G~cyrLys~~ 536 (764)
+ ||.+ .|..++.||+|||||.+. |.|+.+|+..
T Consensus 374 ~--------~d~p----------~~~~~y~qriGR~gR~g~~G~a~~~~~~~ 407 (434)
T 2db3_A 374 N--------YDMP----------SKIDDYVHRIGRTGRVGNNGRATSFFDPE 407 (434)
T ss_dssp E--------SSCC----------SSHHHHHHHHTTSSCTTCCEEEEEEECTT
T ss_pred E--------ECCC----------CCHHHHHHHhcccccCCCCCEEEEEEecc
Confidence 8 5533 467788899999999975 9999999853
No 17
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=99.96 E-value=6.7e-31 Score=299.24 Aligned_cols=304 Identities=15% Similarity=0.169 Sum_probs=111.7
Q ss_pred hhhHHHHHHHHHcC--CeEEEEecCCCCccccHHHHHHHhccCCCCCCCCCceEEEecccHHHHHHHHHHHHHHhCCCCC
Q 038192 37 VMMEQEIMEAVNDN--SAVIICGETGCGKTTQVPQFLFEAGFGSNRCSSRSGRIGVTQPRRVAVLATAKRVAFELGLHLG 114 (764)
Q Consensus 37 ~~~~~~Il~~l~~~--~vviI~GeTGSGKTTqvPq~Lle~~~~~~~~~~~~~~Ii~tQPRRiaAisvA~RVa~E~g~~lG 114 (764)
+.+|.+.+..+..+ +.++++|+||||||.++..++++....... ..+++|..|+|.+|.++++++........+
T Consensus 116 ~~~Q~~ai~~il~~~~~~~l~~a~TGsGKT~~~~l~il~~l~~~~~----~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~ 191 (479)
T 3fmp_B 116 SKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANK----YPQCLCLSPTYELALQTGKVIEQMGKFYPE 191 (479)
T ss_dssp CHHHHHHHHHHTSBSCCEEEEECCSSSSHHHHHHHHHHTTCCTTSC----SCCEEEECSSHHHHHHHHHHHHHHHTTSTT
T ss_pred CHHHHHHHHHHHcCCCCcEEEEcCCCCchhHHHHHHHHHHHhhcCC----CCcEEEEeChHHHHHHHHHHHHHHHhhCCC
Confidence 34466666777665 889999999999999998888876543221 248999999999999999877665544445
Q ss_pred CEeeEEeccCccc---CCCceEEEEchHHHHHHHHH------------HHHHHHHHHh-hcccc---CC-ccCCCCceEE
Q 038192 115 KEVGFQVRHDKKI---GDSCSIKFMTDGILLRELKA------------LYEKQQQLLR-SGQCI---EP-KDRVFPLKLI 174 (764)
Q Consensus 115 ~~VGY~ir~e~~~---s~~t~I~f~T~GiLLr~l~~------------i~de~~~~l~-~~~~~---~~-~~~~~~lKlI 174 (764)
..+++.++..... ....+|+++|+|.|++.+.. |+||+|+++. .++.. .+ ....++.++|
T Consensus 192 ~~~~~~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iViDEah~~~~~~~~~~~~~~i~~~~~~~~~~i 271 (479)
T 3fmp_B 192 LKLAYAVRGNKLERGQKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLPRNCQML 271 (479)
T ss_dssp CCEEEESTTCCCCTTCCCCCSEEEECHHHHHHHHTTSCCCCGGGCCEEEECCHHHHHTSTTHHHHHHHHHTTSCTTSEEE
T ss_pred ceEEEEeCCccccccccCCCCEEEECchHHHHHHHhcCCcCcccCCEEEEECHHHHhhcCCcHHHHHHHHhhCCccceEE
Confidence 6677777755432 34568999999999998832 6799998765 23211 11 1233578999
Q ss_pred Eeecccchh--hhccccCCCCCCCeeeeCCccccee---EEecCCCchhhHHHHHHHHHHHHhhcCCCCCeEEecCCHHH
Q 038192 175 LMSATLRVE--DFISGGRLFRNPPIIEVPTRQFPVT---VHFSKRTEIVDYIGQAYKKVMSIHKRLPQGGILVFVTGQRE 249 (764)
Q Consensus 175 LMSATl~~~--~f~~~~~~f~~~~vi~i~gr~~pV~---~~y~~~~~~~d~l~~~~~~v~~i~~~~~~g~ilvF~~g~~~ 249 (764)
+||||+..+ .+.. .++.++..+.+........ .+|..... .......+..+......+
T Consensus 272 ~~SAT~~~~~~~~~~--~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~~~~----------- 334 (479)
T 3fmp_B 272 LFSATFEDSVWKFAQ--KVVPDPNVIKLKREEETLDTIKQYYVLCSS----RDEKFQALCNLYGAITIA----------- 334 (479)
T ss_dssp EEESCCCHHHHHHHH--HHSSSEEEEEEC---------------------------------------------------
T ss_pred EEeCCCCHHHHHHHH--HHcCCCeEEeccccccCcCCceEEEEEeCC----HHHHHHHHHHHHhhccCC-----------
Confidence 999999654 3433 4566555555543321111 11100000 000001111111111222
Q ss_pred HHHHHHHHHHHHHHhhhhccccccCCccccCCCCCccccchhHHhHHHHHhhcCcccccccccCCCCCcccccCcccccc
Q 038192 250 VEYLCSKLRKASKQLLVNSSKENKGNQVVADSEPNATKDINMKEINEAFEIQGYSTEQQTDRFSSYDEDQFDIDDNELDA 329 (764)
Q Consensus 250 ie~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~ 329 (764)
T Consensus 335 -------------------------------------------------------------------------------- 334 (479)
T 3fmp_B 335 -------------------------------------------------------------------------------- 334 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccCccchhhhhhccchhhhhhhcCCCCCCCCcccccccchhhhhHHHHHHhhcCCCCCCCccccCCCCCCCCcCCCCCCC
Q 038192 330 LSDSETESETEILGEDEKLVEQKCPMDGDDPVDVLKENWSLGSLKLAFEVLSGKNASGPSSQMKLSTPAIPEQCTELPPT 409 (764)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilvfl~g~~~i~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 409 (764)
.++||.+.......+...+..
T Consensus 335 -----------------------------~~lvF~~s~~~~~~l~~~L~~------------------------------ 355 (479)
T 3fmp_B 335 -----------------------------QAMIFCHTRKTASWLAAELSK------------------------------ 355 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred -----------------------------ceEEEeCcHHHHHHHHHHHHh------------------------------
Confidence 345555544433333221111
Q ss_pred CCCCCCCCCCCCccccccCcccCCCCCeEEEecCCCCCHHHHHhhhccCCCCceEEEEecCcccccCCCCCeEEEEeCCc
Q 038192 410 PTPEQCPELSSPDVEKMGDNKRAGVGALCVLPLYAMLPAAAQLRVFEDVKEGERLVVVSTNVAETSLTIPGIKYVVDTGR 489 (764)
Q Consensus 410 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~pLHs~l~~~eQ~~vf~~~~~g~rKVIlsTNIAEtSITIpdV~~VID~G~ 489 (764)
.++.+..+||++++.+|.++++.|..|..+|+|||+++++||+||+|.+||+++.
T Consensus 356 -------------------------~~~~v~~lh~~~~~~~R~~~~~~f~~g~~~iLv~T~~~~~GlDip~v~~VI~~d~ 410 (479)
T 3fmp_B 356 -------------------------EGHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGIDVEQVSVVINFDL 410 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred -------------------------CCccEEEecCCCCHHHHHHHHHHHHcCCCcEEEEccccccCCccccCCEEEEecC
Confidence 1356888999999999999999999999999999999999999999999998554
Q ss_pred ccceeeccCCCccccceeeccHHhHHHhccccCCCCC-CEEEEccCHHH
Q 038192 490 EKVKKYNSANGIESYEIQWISKASAAQRAGRAGRTAP-GHCYRLYSSAV 537 (764)
Q Consensus 490 ~K~~~yd~~~~~~~l~~~~iSkasa~QR~GRAGR~~~-G~cyrLys~~~ 537 (764)
+.... .|.|.+++.||+|||||.+. |.||.+|+...
T Consensus 411 p~~~~------------~~~s~~~~~Qr~GRagR~g~~G~~i~~~~~~~ 447 (479)
T 3fmp_B 411 PVDKD------------GNPDNETYLHRIGRTGRFGKRGLAVNMVDSKH 447 (479)
T ss_dssp -------------------------------------------------
T ss_pred CCCCc------------cCCCHHHHHHHhcccccCCCCceEEEEEcCcc
Confidence 43221 24577888999999999876 99999998654
No 18
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=99.96 E-value=9e-30 Score=283.14 Aligned_cols=299 Identities=16% Similarity=0.253 Sum_probs=214.7
Q ss_pred chhhHHHHHHHHHcCCeEEEEecCCCCccccHHHHHHHhccCCCCCCCCCceEEEecccHHHHHHHHHHHHHHhCCCCCC
Q 038192 36 IVMMEQEIMEAVNDNSAVIICGETGCGKTTQVPQFLFEAGFGSNRCSSRSGRIGVTQPRRVAVLATAKRVAFELGLHLGK 115 (764)
Q Consensus 36 i~~~~~~Il~~l~~~~vviI~GeTGSGKTTqvPq~Lle~~~~~~~~~~~~~~Ii~tQPRRiaAisvA~RVa~E~g~~lG~ 115 (764)
-+.+|.+.++.+.+++.++++++||||||.++..++++...... ...++++..|+|.+|.++++++.. ++...+.
T Consensus 60 ~~~~Q~~ai~~i~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~~----~~~~~lil~Pt~~L~~q~~~~~~~-~~~~~~~ 134 (410)
T 2j0s_A 60 PSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDIQV----RETQALILAPTRELAVQIQKGLLA-LGDYMNV 134 (410)
T ss_dssp CCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHTCCTTS----CSCCEEEECSSHHHHHHHHHHHHH-HTTTTTC
T ss_pred CCHHHHHHHHHHhCCCCEEEECCCCCCchHHHHHHHHHHHhhcc----CCceEEEEcCcHHHHHHHHHHHHH-HhccCCe
Confidence 45677788888888888999999999999999988887653221 136899999999999999987754 5666666
Q ss_pred EeeEEeccCcc------cCCCceEEEEchHHHHHHHHH-----------HHHHHHHHHhhccccCC----ccCCCCceEE
Q 038192 116 EVGFQVRHDKK------IGDSCSIKFMTDGILLRELKA-----------LYEKQQQLLRSGQCIEP----KDRVFPLKLI 174 (764)
Q Consensus 116 ~VGY~ir~e~~------~s~~t~I~f~T~GiLLr~l~~-----------i~de~~~~l~~~~~~~~----~~~~~~lKlI 174 (764)
.++..+...+. ....++|+++|+|.|++.+.. |+||+|+++..++...+ ....++.++|
T Consensus 135 ~~~~~~g~~~~~~~~~~~~~~~~ivv~Tp~~l~~~l~~~~~~~~~~~~vViDEah~~~~~~~~~~~~~i~~~~~~~~~~i 214 (410)
T 2j0s_A 135 QCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVV 214 (410)
T ss_dssp CEEEECTTSCHHHHHHHHHHCCSEEEECHHHHHHHHHTTSSCCTTCCEEEEETHHHHTSTTTHHHHHHHHTTSCTTCEEE
T ss_pred EEEEEECCCCHHHHHHHhhcCCCEEEcCHHHHHHHHHhCCccHhheeEEEEccHHHHHhhhhHHHHHHHHHhCccCceEE
Confidence 67665554432 123568999999999998853 56999987665542111 1223678999
Q ss_pred Eeecccchh--hhccccCCCCCCCeeeeCCccc---ceeEEecCCCchhhHHHHHHHHHHHHhhcCCCCCeEEecCCHHH
Q 038192 175 LMSATLRVE--DFISGGRLFRNPPIIEVPTRQF---PVTVHFSKRTEIVDYIGQAYKKVMSIHKRLPQGGILVFVTGQRE 249 (764)
Q Consensus 175 LMSATl~~~--~f~~~~~~f~~~~vi~i~gr~~---pV~~~y~~~~~~~d~l~~~~~~v~~i~~~~~~g~ilvF~~g~~~ 249 (764)
+||||+..+ .+.. .++.++..+.+..... .+..+|..... .++... .+.++......+.+|||+++.+.
T Consensus 215 ~~SAT~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~k~~---~l~~~~~~~~~~~~lVf~~~~~~ 288 (410)
T 2j0s_A 215 LISATLPHEILEMTN--KFMTDPIRILVKRDELTLEGIKQFFVAVER-EEWKFD---TLCDLYDTLTITQAVIFCNTKRK 288 (410)
T ss_dssp EEESCCCHHHHTTGG--GTCSSCEEECCCGGGCSCTTEEEEEEEESS-TTHHHH---HHHHHHHHHTSSEEEEECSSHHH
T ss_pred EEEcCCCHHHHHHHH--HHcCCCEEEEecCccccCCCceEEEEEeCc-HHhHHH---HHHHHHHhcCCCcEEEEEcCHHH
Confidence 999999654 3332 5666655555443322 23333332111 121111 22233333355678999999888
Q ss_pred HHHHHHHHHHHHHHhhhhccccccCCccccCCCCCccccchhHHhHHHHHhhcCcccccccccCCCCCcccccCcccccc
Q 038192 250 VEYLCSKLRKASKQLLVNSSKENKGNQVVADSEPNATKDINMKEINEAFEIQGYSTEQQTDRFSSYDEDQFDIDDNELDA 329 (764)
Q Consensus 250 ie~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~ 329 (764)
++.+++.|.+
T Consensus 289 ~~~l~~~L~~---------------------------------------------------------------------- 298 (410)
T 2j0s_A 289 VDWLTEKMRE---------------------------------------------------------------------- 298 (410)
T ss_dssp HHHHHHHHHH----------------------------------------------------------------------
T ss_pred HHHHHHHHHh----------------------------------------------------------------------
Confidence 8877666542
Q ss_pred ccCccchhhhhhccchhhhhhhcCCCCCCCCcccccccchhhhhHHHHHHhhcCCCCCCCccccCCCCCCCCcCCCCCCC
Q 038192 330 LSDSETESETEILGEDEKLVEQKCPMDGDDPVDVLKENWSLGSLKLAFEVLSGKNASGPSSQMKLSTPAIPEQCTELPPT 409 (764)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilvfl~g~~~i~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 409 (764)
T Consensus 299 -------------------------------------------------------------------------------- 298 (410)
T 2j0s_A 299 -------------------------------------------------------------------------------- 298 (410)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCCCCCccccccCcccCCCCCeEEEecCCCCCHHHHHhhhccCCCCceEEEEecCcccccCCCCCeEEEEeCCc
Q 038192 410 PTPEQCPELSSPDVEKMGDNKRAGVGALCVLPLYAMLPAAAQLRVFEDVKEGERLVVVSTNVAETSLTIPGIKYVVDTGR 489 (764)
Q Consensus 410 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~pLHs~l~~~eQ~~vf~~~~~g~rKVIlsTNIAEtSITIpdV~~VID~G~ 489 (764)
.++.+..+||++++.+|.++++.|.+|..+|+|||+++++||+||+|.+||++
T Consensus 299 -------------------------~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~~v~~Vi~~-- 351 (410)
T 2j0s_A 299 -------------------------ANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIINY-- 351 (410)
T ss_dssp -------------------------TTCCCEEECTTSCHHHHHHHHHHHHHTSSCEEEECGGGSSSCCCTTEEEEEES--
T ss_pred -------------------------CCCceEEeeCCCCHHHHHHHHHHHHCCCCCEEEECChhhCcCCcccCCEEEEE--
Confidence 02346788999999999999999999999999999999999999999999984
Q ss_pred ccceeeccCCCccccceeeccHHhHHHhccccCCCC-CCEEEEccCHHHh
Q 038192 490 EKVKKYNSANGIESYEIQWISKASAAQRAGRAGRTA-PGHCYRLYSSAVF 538 (764)
Q Consensus 490 ~K~~~yd~~~~~~~l~~~~iSkasa~QR~GRAGR~~-~G~cyrLys~~~~ 538 (764)
|+ |.|.+++.||+|||||.+ +|.||.+++....
T Consensus 352 ------~~----------p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~ 385 (410)
T 2j0s_A 352 ------DL----------PNNRELYIHRIGRSGRYGRKGVAINFVKNDDI 385 (410)
T ss_dssp ------SC----------CSSHHHHHHHHTTSSGGGCCEEEEEEEEGGGH
T ss_pred ------CC----------CCCHHHHHHhcccccCCCCceEEEEEecHHHH
Confidence 43 346788999999999995 5999999998764
No 19
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=99.96 E-value=1e-28 Score=269.04 Aligned_cols=298 Identities=16% Similarity=0.181 Sum_probs=209.6
Q ss_pred chhhHHHHHHHHHcC-CeEEEEecCCCCccccHHHHHHHhccCCCCCCCCCceEEEecccHHHHHHHHHHHHHHhCCCCC
Q 038192 36 IVMMEQEIMEAVNDN-SAVIICGETGCGKTTQVPQFLFEAGFGSNRCSSRSGRIGVTQPRRVAVLATAKRVAFELGLHLG 114 (764)
Q Consensus 36 i~~~~~~Il~~l~~~-~vviI~GeTGSGKTTqvPq~Lle~~~~~~~~~~~~~~Ii~tQPRRiaAisvA~RVa~E~g~~lG 114 (764)
.+.+|.+.+..+.++ +.+++.++||||||+++..++++...... ..++++..|+|.+|.++++++....+.. +
T Consensus 29 ~~~~Q~~~i~~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~-----~~~~lil~P~~~L~~q~~~~~~~~~~~~-~ 102 (367)
T 1hv8_A 29 PTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIPLIELVNENN-----GIEAIILTPTRELAIQVADEIESLKGNK-N 102 (367)
T ss_dssp CCHHHHHHHHHHHHTCSEEEEECCSSSSHHHHHHHHHHHHSCSSS-----SCCEEEECSCHHHHHHHHHHHHHHHCSS-C
T ss_pred CCHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHHHhcccC-----CCcEEEEcCCHHHHHHHHHHHHHHhCCC-C
Confidence 345555566665555 78999999999999999988888654322 2589999999999999999888766542 3
Q ss_pred CEeeEEeccCcc-----cCCCceEEEEchHHHHHHHHH-----------HHHHHHHHHhhccccCC----ccCCCCceEE
Q 038192 115 KEVGFQVRHDKK-----IGDSCSIKFMTDGILLRELKA-----------LYEKQQQLLRSGQCIEP----KDRVFPLKLI 174 (764)
Q Consensus 115 ~~VGY~ir~e~~-----~s~~t~I~f~T~GiLLr~l~~-----------i~de~~~~l~~~~~~~~----~~~~~~lKlI 174 (764)
..|+........ .-.+++|+|+|++.|++.+.. |+||+|.+...++...+ ....++.++|
T Consensus 103 ~~v~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIiDEah~~~~~~~~~~~~~~~~~~~~~~~~i 182 (367)
T 1hv8_A 103 LKIAKIYGGKAIYPQIKALKNANIVVGTPGRILDHINRGTLNLKNVKYFILDEADEMLNMGFIKDVEKILNACNKDKRIL 182 (367)
T ss_dssp CCEEEECTTSCHHHHHHHHHTCSEEEECHHHHHHHHHTTCSCTTSCCEEEEETHHHHHTTTTHHHHHHHHHTSCSSCEEE
T ss_pred ceEEEEECCcchHHHHhhcCCCCEEEecHHHHHHHHHcCCcccccCCEEEEeCchHhhhhchHHHHHHHHHhCCCCceEE
Confidence 334433322221 112578999999999998743 56999987655432111 1234678999
Q ss_pred EeecccchhhhccccCCCCCCCeeeeCCcccceeEEecCCCchhhHHHHHHHHHHHHhhcCCCCCeEEecCCHHHHHHHH
Q 038192 175 LMSATLRVEDFISGGRLFRNPPIIEVPTRQFPVTVHFSKRTEIVDYIGQAYKKVMSIHKRLPQGGILVFVTGQREVEYLC 254 (764)
Q Consensus 175 LMSATl~~~~f~~~~~~f~~~~vi~i~gr~~pV~~~y~~~~~~~d~l~~~~~~v~~i~~~~~~g~ilvF~~g~~~ie~l~ 254 (764)
+||||+..+.......++++...+..... ..+...|..... .+.+.. +..+.. ...+.+|||+++.+.++.++
T Consensus 183 ~~SAT~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~----l~~~l~-~~~~~~lvf~~~~~~~~~l~ 255 (367)
T 1hv8_A 183 LFSATMPREILNLAKKYMGDYSFIKAKIN-ANIEQSYVEVNE-NERFEA----LCRLLK-NKEFYGLVFCKTKRDTKELA 255 (367)
T ss_dssp EECSSCCHHHHHHHHHHCCSEEEEECCSS-SSSEEEEEECCG-GGHHHH----HHHHHC-STTCCEEEECSSHHHHHHHH
T ss_pred EEeeccCHHHHHHHHHHcCCCeEEEecCC-CCceEEEEEeCh-HHHHHH----HHHHHh-cCCCcEEEEECCHHHHHHHH
Confidence 99999965432211156766555544332 244444432222 233322 222222 34567899999988887776
Q ss_pred HHHHHHHHHhhhhccccccCCccccCCCCCccccchhHHhHHHHHhhcCcccccccccCCCCCcccccCccccccccCcc
Q 038192 255 SKLRKASKQLLVNSSKENKGNQVVADSEPNATKDINMKEINEAFEIQGYSTEQQTDRFSSYDEDQFDIDDNELDALSDSE 334 (764)
Q Consensus 255 ~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (764)
+.|++
T Consensus 256 ~~L~~--------------------------------------------------------------------------- 260 (367)
T 1hv8_A 256 SMLRD--------------------------------------------------------------------------- 260 (367)
T ss_dssp HHHHH---------------------------------------------------------------------------
T ss_pred HHHHh---------------------------------------------------------------------------
Confidence 66542
Q ss_pred chhhhhhccchhhhhhhcCCCCCCCCcccccccchhhhhHHHHHHhhcCCCCCCCccccCCCCCCCCcCCCCCCCCCCCC
Q 038192 335 TESETEILGEDEKLVEQKCPMDGDDPVDVLKENWSLGSLKLAFEVLSGKNASGPSSQMKLSTPAIPEQCTELPPTPTPEQ 414 (764)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~ilvfl~g~~~i~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 414 (764)
T Consensus 261 -------------------------------------------------------------------------------- 260 (367)
T 1hv8_A 261 -------------------------------------------------------------------------------- 260 (367)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCccccccCcccCCCCCeEEEecCCCCCHHHHHhhhccCCCCceEEEEecCcccccCCCCCeEEEEeCCccccee
Q 038192 415 CPELSSPDVEKMGDNKRAGVGALCVLPLYAMLPAAAQLRVFEDVKEGERLVVVSTNVAETSLTIPGIKYVVDTGREKVKK 494 (764)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~~~~~~~i~pLHs~l~~~eQ~~vf~~~~~g~rKVIlsTNIAEtSITIpdV~~VID~G~~K~~~ 494 (764)
.++.+..+||+++..+|.++++.+.+|..+|++||+++++|+++|++.+||+++.
T Consensus 261 --------------------~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gid~~~~~~Vi~~~~----- 315 (367)
T 1hv8_A 261 --------------------IGFKAGAIHGDLSQSQREKVIRLFKQKKIRILIATDVMSRGIDVNDLNCVINYHL----- 315 (367)
T ss_dssp --------------------TTCCEEEECSSSCHHHHHHHHHHHHTTSSSEEEECTTHHHHCCCSCCSEEEESSC-----
T ss_pred --------------------cCCCeEEeeCCCCHHHHHHHHHHHHcCCCeEEEECChhhcCCCcccCCEEEEecC-----
Confidence 0234778899999999999999999999999999999999999999999998543
Q ss_pred eccCCCccccceeeccHHhHHHhccccCCCC-CCEEEEccCHHHhc
Q 038192 495 YNSANGIESYEIQWISKASAAQRAGRAGRTA-PGHCYRLYSSAVFN 539 (764)
Q Consensus 495 yd~~~~~~~l~~~~iSkasa~QR~GRAGR~~-~G~cyrLys~~~~~ 539 (764)
|.|.+++.||+|||||.+ +|.||.+|++..+.
T Consensus 316 -------------~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~ 348 (367)
T 1hv8_A 316 -------------PQNPESYMHRIGRTGRAGKKGKAISIINRREYK 348 (367)
T ss_dssp -------------CSCHHHHHHHSTTTCCSSSCCEEEEEECTTSHH
T ss_pred -------------CCCHHHhhhcccccccCCCccEEEEEEcHHHHH
Confidence 457889999999999997 69999999987664
No 20
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=99.96 E-value=1.2e-28 Score=272.87 Aligned_cols=299 Identities=16% Similarity=0.187 Sum_probs=209.7
Q ss_pred chhhHHHHHHHHHcCCeEEEEecCCCCccccHHHHHHHhccCCCCCCCCCceEEEecccHHHHHHHHHHHHHHhCCCCCC
Q 038192 36 IVMMEQEIMEAVNDNSAVIICGETGCGKTTQVPQFLFEAGFGSNRCSSRSGRIGVTQPRRVAVLATAKRVAFELGLHLGK 115 (764)
Q Consensus 36 i~~~~~~Il~~l~~~~vviI~GeTGSGKTTqvPq~Lle~~~~~~~~~~~~~~Ii~tQPRRiaAisvA~RVa~E~g~~lG~ 115 (764)
-+.+|.++++.+.+++.++++++||||||++...++++...... ...++++..|+|.+|.++++++.. ++...|.
T Consensus 44 ~~~~Q~~~i~~i~~~~~~li~a~TGsGKT~~~~~~~~~~~~~~~----~~~~~lil~P~~~L~~q~~~~~~~-~~~~~~~ 118 (400)
T 1s2m_A 44 PSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPTLEKVKPKL----NKIQALIMVPTRELALQTSQVVRT-LGKHCGI 118 (400)
T ss_dssp CCHHHHHHHHHHHHTCCEEEECCTTSCHHHHHHHHHHHHCCTTS----CSCCEEEECSSHHHHHHHHHHHHH-HTTTTTC
T ss_pred CCHHHHHHHHHHhcCCCEEEECCCCcHHHHHHHHHHHHHHhhcc----CCccEEEEcCCHHHHHHHHHHHHH-HhcccCc
Confidence 56778888888888888999999999999998888887654321 125799999999999999886654 5555566
Q ss_pred EeeEEeccCcc------cCCCceEEEEchHHHHHHHHH-----------HHHHHHHHHhhcccc---CC-ccCCCCceEE
Q 038192 116 EVGFQVRHDKK------IGDSCSIKFMTDGILLRELKA-----------LYEKQQQLLRSGQCI---EP-KDRVFPLKLI 174 (764)
Q Consensus 116 ~VGY~ir~e~~------~s~~t~I~f~T~GiLLr~l~~-----------i~de~~~~l~~~~~~---~~-~~~~~~lKlI 174 (764)
.++........ ...+++|+|||+|.|++.+.. |+||+|.++..++.. .+ ....+..+++
T Consensus 119 ~~~~~~g~~~~~~~~~~~~~~~~Ivv~T~~~l~~~~~~~~~~~~~~~~vIiDEaH~~~~~~~~~~~~~i~~~~~~~~~~i 198 (400)
T 1s2m_A 119 SCMVTTGGTNLRDDILRLNETVHILVGTPGRVLDLASRKVADLSDCSLFIMDEADKMLSRDFKTIIEQILSFLPPTHQSL 198 (400)
T ss_dssp CEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEEESHHHHSSHHHHHHHHHHHTTSCSSCEEE
T ss_pred eEEEEeCCcchHHHHHHhcCCCCEEEEchHHHHHHHHhCCcccccCCEEEEeCchHhhhhchHHHHHHHHHhCCcCceEE
Confidence 66654443321 235678999999999988743 568988764433211 11 1123578999
Q ss_pred Eeecccchh--hhccccCCCCCCCeeeeCCcc--cceeEEecCCCchhhHHHHHHHHHHHHhhcCCCCCeEEecCCHHHH
Q 038192 175 LMSATLRVE--DFISGGRLFRNPPIIEVPTRQ--FPVTVHFSKRTEIVDYIGQAYKKVMSIHKRLPQGGILVFVTGQREV 250 (764)
Q Consensus 175 LMSATl~~~--~f~~~~~~f~~~~vi~i~gr~--~pV~~~y~~~~~~~d~l~~~~~~v~~i~~~~~~g~ilvF~~g~~~i 250 (764)
+||||+... .+.. .++..+..+.+.... ..+..+|..... .+.+. .+..+....+.+.+|||+++...+
T Consensus 199 ~lSAT~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~k~~----~l~~~~~~~~~~~~lVf~~~~~~~ 271 (400)
T 1s2m_A 199 LFSATFPLTVKEFMV--KHLHKPYEINLMEELTLKGITQYYAFVEE-RQKLH----CLNTLFSKLQINQAIIFCNSTNRV 271 (400)
T ss_dssp EEESCCCHHHHHHHH--HHCSSCEEESCCSSCBCTTEEEEEEECCG-GGHHH----HHHHHHHHSCCSEEEEECSSHHHH
T ss_pred EEEecCCHHHHHHHH--HHcCCCeEEEeccccccCCceeEEEEech-hhHHH----HHHHHHhhcCCCcEEEEEecHHHH
Confidence 999999543 2222 345444333333221 123333322111 11111 122233334567889999998888
Q ss_pred HHHHHHHHHHHHHhhhhccccccCCccccCCCCCccccchhHHhHHHHHhhcCcccccccccCCCCCcccccCccccccc
Q 038192 251 EYLCSKLRKASKQLLVNSSKENKGNQVVADSEPNATKDINMKEINEAFEIQGYSTEQQTDRFSSYDEDQFDIDDNELDAL 330 (764)
Q Consensus 251 e~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~ 330 (764)
+.+++.|.+.
T Consensus 272 ~~l~~~L~~~---------------------------------------------------------------------- 281 (400)
T 1s2m_A 272 ELLAKKITDL---------------------------------------------------------------------- 281 (400)
T ss_dssp HHHHHHHHHH----------------------------------------------------------------------
T ss_pred HHHHHHHHhc----------------------------------------------------------------------
Confidence 8776665420
Q ss_pred cCccchhhhhhccchhhhhhhcCCCCCCCCcccccccchhhhhHHHHHHhhcCCCCCCCccccCCCCCCCCcCCCCCCCC
Q 038192 331 SDSETESETEILGEDEKLVEQKCPMDGDDPVDVLKENWSLGSLKLAFEVLSGKNASGPSSQMKLSTPAIPEQCTELPPTP 410 (764)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilvfl~g~~~i~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 410 (764)
T Consensus 282 -------------------------------------------------------------------------------- 281 (400)
T 1s2m_A 282 -------------------------------------------------------------------------------- 281 (400)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCCCCccccccCcccCCCCCeEEEecCCCCCHHHHHhhhccCCCCceEEEEecCcccccCCCCCeEEEEeCCcc
Q 038192 411 TPEQCPELSSPDVEKMGDNKRAGVGALCVLPLYAMLPAAAQLRVFEDVKEGERLVVVSTNVAETSLTIPGIKYVVDTGRE 490 (764)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~pLHs~l~~~eQ~~vf~~~~~g~rKVIlsTNIAEtSITIpdV~~VID~G~~ 490 (764)
++.+..+||+++..+|.++++.+.+|..+|+|||+++++||+||++.+||+.+.
T Consensus 282 -------------------------~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidip~~~~Vi~~~~- 335 (400)
T 1s2m_A 282 -------------------------GYSCYYSHARMKQQERNKVFHEFRQGKVRTLVCSDLLTRGIDIQAVNVVINFDF- 335 (400)
T ss_dssp -------------------------TCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEESSCSSSSCCCTTEEEEEESSC-
T ss_pred -------------------------CCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCccccCCCccCCCEEEEeCC-
Confidence 134778899999999999999999999999999999999999999999997443
Q ss_pred cceeeccCCCccccceeeccHHhHHHhccccCCCC-CCEEEEccCHHHhc
Q 038192 491 KVKKYNSANGIESYEIQWISKASAAQRAGRAGRTA-PGHCYRLYSSAVFN 539 (764)
Q Consensus 491 K~~~yd~~~~~~~l~~~~iSkasa~QR~GRAGR~~-~G~cyrLys~~~~~ 539 (764)
|.|.+++.||+|||||.+ +|.||.+|++.+..
T Consensus 336 -----------------p~s~~~~~Qr~GR~gR~g~~g~~~~l~~~~~~~ 368 (400)
T 1s2m_A 336 -----------------PKTAETYLHRIGRSGRFGHLGLAINLINWNDRF 368 (400)
T ss_dssp -----------------CSSHHHHHHHHCBSSCTTCCEEEEEEECGGGHH
T ss_pred -----------------CCCHHHHHHhcchhcCCCCCceEEEEeccchHH
Confidence 357788999999999996 59999999987653
No 21
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=99.96 E-value=4.7e-29 Score=277.57 Aligned_cols=303 Identities=15% Similarity=0.164 Sum_probs=203.2
Q ss_pred chhhHHHHHHHHHcCCeEEEEecCCCCccccHHHHHHHhccCCCC--------------CCCCCceEEEecccHHHHHHH
Q 038192 36 IVMMEQEIMEAVNDNSAVIICGETGCGKTTQVPQFLFEAGFGSNR--------------CSSRSGRIGVTQPRRVAVLAT 101 (764)
Q Consensus 36 i~~~~~~Il~~l~~~~vviI~GeTGSGKTTqvPq~Lle~~~~~~~--------------~~~~~~~Ii~tQPRRiaAisv 101 (764)
-+..|.+++.++.+++.++++++||||||+.+..++++....... ......++++..|+|.+|.++
T Consensus 38 ~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~ 117 (417)
T 2i4i_A 38 PTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQIYSDGPGEALRAMKENGRYGRRKQYPISLVLAPTRELAVQI 117 (417)
T ss_dssp CCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHHCCCHHHHHHHHCBTTBSCSBCCSEEEECSSHHHHHHH
T ss_pred CCHHHHHHHHHHccCCCEEEEcCCCCHHHHHHHHHHHHHHHhccccchhhccccccccccccCCccEEEECCcHHHHHHH
Confidence 355677777888888889999999999999766666654221100 001125799999999999999
Q ss_pred HHHHHHHhCCCCCCEeeEEeccCc------ccCCCceEEEEchHHHHHHHHH-----------HHHHHHHHHhhccccCC
Q 038192 102 AKRVAFELGLHLGKEVGFQVRHDK------KIGDSCSIKFMTDGILLRELKA-----------LYEKQQQLLRSGQCIEP 164 (764)
Q Consensus 102 A~RVa~E~g~~lG~~VGY~ir~e~------~~s~~t~I~f~T~GiLLr~l~~-----------i~de~~~~l~~~~~~~~ 164 (764)
++++... +...|..++.-....+ ....+++|+|+|+|.|++.+.. |+||+|.++..++...+
T Consensus 118 ~~~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~iViDEah~~~~~~~~~~~ 196 (417)
T 2i4i_A 118 YEEARKF-SYRSRVRPCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQI 196 (417)
T ss_dssp HHHHHHH-HTTSSCCEEEECSSSCHHHHHHHHTTCCSEEEECHHHHHHHHHTTSBCCTTCCEEEESSHHHHHHTTCHHHH
T ss_pred HHHHHHH-hCcCCceEEEEECCCCHHHHHHHhhCCCCEEEEChHHHHHHHHcCCcChhhCcEEEEEChhHhhccCcHHHH
Confidence 9977654 3344545554433322 1235688999999999998853 67999987765542111
Q ss_pred --------ccCCCCceEEEeecccch--hhhccccCCCCCCCeeeeCCcc---cceeEEecCCCchhhHHHHHHHHHHHH
Q 038192 165 --------KDRVFPLKLILMSATLRV--EDFISGGRLFRNPPIIEVPTRQ---FPVTVHFSKRTEIVDYIGQAYKKVMSI 231 (764)
Q Consensus 165 --------~~~~~~lKlILMSATl~~--~~f~~~~~~f~~~~vi~i~gr~---~pV~~~y~~~~~~~d~l~~~~~~v~~i 231 (764)
.......++|+||||+.. ..+.. .+++++..+.+.... -.+...|..... .+.. ..+.++
T Consensus 197 ~~i~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~~----~~l~~~ 269 (417)
T 2i4i_A 197 RRIVEQDTMPPKGVRHTMMFSATFPKEIQMLAR--DFLDEYIFLAVGRVGSTSENITQKVVWVEE-SDKR----SFLLDL 269 (417)
T ss_dssp HHHHTSSSCCCBTTBEEEEEESCCCHHHHHHHH--HHCSSCEEEEEC----CCSSEEEEEEECCG-GGHH----HHHHHH
T ss_pred HHHHHhccCCCcCCcEEEEEEEeCCHHHHHHHH--HHcCCCEEEEeCCCCCCccCceEEEEEecc-HhHH----HHHHHH
Confidence 111236889999999943 33332 355544344432211 112222211111 1111 112222
Q ss_pred hhcC-CCCCeEEecCCHHHHHHHHHHHHHHHHHhhhhccccccCCccccCCCCCccccchhHHhHHHHHhhcCccccccc
Q 038192 232 HKRL-PQGGILVFVTGQREVEYLCSKLRKASKQLLVNSSKENKGNQVVADSEPNATKDINMKEINEAFEIQGYSTEQQTD 310 (764)
Q Consensus 232 ~~~~-~~g~ilvF~~g~~~ie~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~ 310 (764)
.... ..+.+|||+++.+.++.++..|.+
T Consensus 270 l~~~~~~~~~lVf~~~~~~~~~l~~~L~~--------------------------------------------------- 298 (417)
T 2i4i_A 270 LNATGKDSLTLVFVETKKGADSLEDFLYH--------------------------------------------------- 298 (417)
T ss_dssp HHTCCTTCEEEEECSSHHHHHHHHHHHHH---------------------------------------------------
T ss_pred HHhcCCCCeEEEEECCHHHHHHHHHHHHH---------------------------------------------------
Confidence 2223 456689999998888777665532
Q ss_pred ccCCCCCcccccCccccccccCccchhhhhhccchhhhhhhcCCCCCCCCcccccccchhhhhHHHHHHhhcCCCCCCCc
Q 038192 311 RFSSYDEDQFDIDDNELDALSDSETESETEILGEDEKLVEQKCPMDGDDPVDVLKENWSLGSLKLAFEVLSGKNASGPSS 390 (764)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilvfl~g~~~i~~l~~~~~~l~~~~~~~~~~ 390 (764)
T Consensus 299 -------------------------------------------------------------------------------- 298 (417)
T 2i4i_A 299 -------------------------------------------------------------------------------- 298 (417)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccCCCCCCCCcCCCCCCCCCCCCCCCCCCCccccccCcccCCCCCeEEEecCCCCCHHHHHhhhccCCCCceEEEEecC
Q 038192 391 QMKLSTPAIPEQCTELPPTPTPEQCPELSSPDVEKMGDNKRAGVGALCVLPLYAMLPAAAQLRVFEDVKEGERLVVVSTN 470 (764)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~pLHs~l~~~eQ~~vf~~~~~g~rKVIlsTN 470 (764)
.++.+..+||+++.++|.++++.+.+|..+|+|||+
T Consensus 299 --------------------------------------------~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~ 334 (417)
T 2i4i_A 299 --------------------------------------------EGYACTSIHGDRSQRDREEALHQFRSGKSPILVATA 334 (417)
T ss_dssp --------------------------------------------TTCCEEEECTTSCHHHHHHHHHHHHHTSSCEEEECH
T ss_pred --------------------------------------------CCCCeeEecCCCCHHHHHHHHHHHHcCCCCEEEECC
Confidence 123478899999999999999999999999999999
Q ss_pred cccccCCCCCeEEEEeCCcccceeeccCCCccccceeeccHHhHHHhccccCCCCC-CEEEEccCHHHhc
Q 038192 471 VAETSLTIPGIKYVVDTGREKVKKYNSANGIESYEIQWISKASAAQRAGRAGRTAP-GHCYRLYSSAVFN 539 (764)
Q Consensus 471 IAEtSITIpdV~~VID~G~~K~~~yd~~~~~~~l~~~~iSkasa~QR~GRAGR~~~-G~cyrLys~~~~~ 539 (764)
++++||+||+|.+||+++. |.|.+++.||+|||||.+. |.||.+|++....
T Consensus 335 ~~~~Gidip~v~~Vi~~~~------------------p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~ 386 (417)
T 2i4i_A 335 VAARGLDISNVKHVINFDL------------------PSDIEEYVHRIGRTGRVGNLGLATSFFNERNIN 386 (417)
T ss_dssp HHHTTSCCCCEEEEEESSC------------------CSSHHHHHHHHTTBCC--CCEEEEEEECGGGGG
T ss_pred hhhcCCCcccCCEEEEEcC------------------CCCHHHHHHhcCccccCCCCceEEEEEccccHH
Confidence 9999999999999998443 3477889999999999975 9999999987653
No 22
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=99.95 E-value=1.3e-28 Score=277.87 Aligned_cols=274 Identities=20% Similarity=0.201 Sum_probs=187.6
Q ss_pred HHHcCCeEEEEecCCCCccccHHHHHHHhccCCCCCCCCCceEEEecccHHHHHHHHHHHHHHhCCCCCCEeeEEeccC-
Q 038192 46 AVNDNSAVIICGETGCGKTTQVPQFLFEAGFGSNRCSSRSGRIGVTQPRRVAVLATAKRVAFELGLHLGKEVGFQVRHD- 124 (764)
Q Consensus 46 ~l~~~~vviI~GeTGSGKTTqvPq~Lle~~~~~~~~~~~~~~Ii~tQPRRiaAisvA~RVa~E~g~~lG~~VGY~ir~e- 124 (764)
++.+++.++++|+||||||+++...+++.....+ .+++++.|+|++|.++++++. |-.|+|+.+.-
T Consensus 4 ~l~~g~~vlv~a~TGSGKT~~~l~~~l~~~~~~~------~~~lil~Ptr~La~Q~~~~l~-------~~~v~~~~~~~~ 70 (440)
T 1yks_A 4 MLKKGMTTVLDFHPGAGKTRRFLPQILAECARRR------LRTLVLAPTRVVLSEMKEAFH-------GLDVKFHTQAFS 70 (440)
T ss_dssp TTSTTCEEEECCCTTSSTTTTHHHHHHHHHHHTT------CCEEEEESSHHHHHHHHHHTT-------TSCEEEESSCCC
T ss_pred HhhCCCCEEEEcCCCCCHHHHHHHHHHHHHHhcC------CeEEEEcchHHHHHHHHHHHh-------cCCeEEecccce
Confidence 4567889999999999999997666665433221 478899999999999888664 33477777653
Q ss_pred cccCCCceEEEEchHHHHHHHHH----------HHHHHHHH-----HhhccccCCccCCCCceEEEeecccchhhhcccc
Q 038192 125 KKIGDSCSIKFMTDGILLRELKA----------LYEKQQQL-----LRSGQCIEPKDRVFPLKLILMSATLRVEDFISGG 189 (764)
Q Consensus 125 ~~~s~~t~I~f~T~GiLLr~l~~----------i~de~~~~-----l~~~~~~~~~~~~~~lKlILMSATl~~~~f~~~~ 189 (764)
...++..-+-+++.|.+.+.+.. |+||+|++ +..++..... ..++.++|+||||+.....
T Consensus 71 ~v~Tp~~l~~~l~~~~l~~~~~~~~~~~~l~~vViDEah~~~~~~~~~~~~~~~~~-~~~~~~~l~~SAT~~~~~~---- 145 (440)
T 1yks_A 71 AHGSGREVIDAMCHATLTYRMLEPTRVVNWEVIIMDEAHFLDPASIAARGWAAHRA-RANESATILMTATPPGTSD---- 145 (440)
T ss_dssp CCCCSSCCEEEEEHHHHHHHHTSSSCCCCCSEEEETTTTCCSHHHHHHHHHHHHHH-HTTSCEEEEECSSCTTCCC----
T ss_pred eccCCccceeeecccchhHhhhCcccccCccEEEEECccccCcchHHHHHHHHHHh-ccCCceEEEEeCCCCchhh----
Confidence 34456677888999988766532 57998876 4444432221 1357899999999965422
Q ss_pred CCCC-CCCeeeeCCcccceeEEecCCCchhhHHHHHHHHHHHHhhcCCCCCeEEecCCHHHHHHHHHHHHHHHHHhhhhc
Q 038192 190 RLFR-NPPIIEVPTRQFPVTVHFSKRTEIVDYIGQAYKKVMSIHKRLPQGGILVFVTGQREVEYLCSKLRKASKQLLVNS 268 (764)
Q Consensus 190 ~~f~-~~~vi~i~gr~~pV~~~y~~~~~~~d~l~~~~~~v~~i~~~~~~g~ilvF~~g~~~ie~l~~~L~~~~~~~~~~~ 268 (764)
.+.. ..++..+.. .+... .....+. .+.+ ..+.++||+++.+.++.+++.|++
T Consensus 146 ~~~~~~~~~~~~~~-------~~~~~-~~~~~~~----~l~~-----~~~~~lVF~~s~~~a~~l~~~L~~--------- 199 (440)
T 1yks_A 146 EFPHSNGEIEDVQT-------DIPSE-PWNTGHD----WILA-----DKRPTAWFLPSIRAANVMAASLRK--------- 199 (440)
T ss_dssp SSCCCSSCEEEEEC-------CCCSS-CCSSSCH----HHHH-----CCSCEEEECSCHHHHHHHHHHHHH---------
T ss_pred hhhhcCCCeeEeee-------ccChH-HHHHHHH----HHHh-----cCCCEEEEeCCHHHHHHHHHHHHH---------
Confidence 1222 233322221 11111 1111111 1111 256899999999988887766643
Q ss_pred cccccCCccccCCCCCccccchhHHhHHHHHhhcCcccccccccCCCCCcccccCccccccccCccchhhhhhccchhhh
Q 038192 269 SKENKGNQVVADSEPNATKDINMKEINEAFEIQGYSTEQQTDRFSSYDEDQFDIDDNELDALSDSETESETEILGEDEKL 348 (764)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 348 (764)
T Consensus 200 -------------------------------------------------------------------------------- 199 (440)
T 1yks_A 200 -------------------------------------------------------------------------------- 199 (440)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhcCCCCCCCCcccccccchhhhhHHHHHHhhcCCCCCCCccccCCCCCCCCcCCCCCCCCCCCCCCCCCCCccccccC
Q 038192 349 VEQKCPMDGDDPVDVLKENWSLGSLKLAFEVLSGKNASGPSSQMKLSTPAIPEQCTELPPTPTPEQCPELSSPDVEKMGD 428 (764)
Q Consensus 349 ~~~~~~~~~~~ilvfl~g~~~i~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 428 (764)
T Consensus 200 -------------------------------------------------------------------------------- 199 (440)
T 1yks_A 200 -------------------------------------------------------------------------------- 199 (440)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccCCCCCeEEEecCCCCCHHHHHhhhccCCCCceEEEEecCcccccCCCCCeEEEEeCCcccceee-ccCCCcccccee
Q 038192 429 NKRAGVGALCVLPLYAMLPAAAQLRVFEDVKEGERLVVVSTNVAETSLTIPGIKYVVDTGREKVKKY-NSANGIESYEIQ 507 (764)
Q Consensus 429 ~~~~~~~~~~i~pLHs~l~~~eQ~~vf~~~~~g~rKVIlsTNIAEtSITIpdV~~VID~G~~K~~~y-d~~~~~~~l~~~ 507 (764)
.++.+..+|| ++|.++++.|.+|..+|+|||+++|+||+|| |++|||+|..+...| |..+++......
T Consensus 200 ------~~~~v~~lhg----~~R~~~~~~F~~g~~~vLVaT~v~e~GiDip-v~~VI~~g~~~~pv~~~~~~~~vi~~~~ 268 (440)
T 1yks_A 200 ------AGKSVVVLNR----KTFEREYPTIKQKKPDFILATDIAEMGANLC-VERVLDCRTAFKPVLVDEGRKVAIKGPL 268 (440)
T ss_dssp ------TTCCEEECCS----SSCC--------CCCSEEEESSSTTCCTTCC-CSEEEECCEEEEEEEETTTTEEEEEEEE
T ss_pred ------cCCCEEEecc----hhHHHHHhhhcCCCceEEEECChhheeeccC-ceEEEeCCccceeeecccccceeecccc
Confidence 0134778898 4688899999999999999999999999999 999999999998876 555567777788
Q ss_pred eccHHhHHHhccccCCC--CCCEEEEccC
Q 038192 508 WISKASAAQRAGRAGRT--APGHCYRLYS 534 (764)
Q Consensus 508 ~iSkasa~QR~GRAGR~--~~G~cyrLys 534 (764)
|.|.+++.||+|||||. .+|.||.+|+
T Consensus 269 p~~~~~~~Qr~GR~GR~g~~~g~~~~l~~ 297 (440)
T 1yks_A 269 RISASSAAQRRGRIGRNPNRDGDSYYYSE 297 (440)
T ss_dssp ECCHHHHHHHHTTSSCCTTCCCEEEEECS
T ss_pred ccCHHHHHHhccccCCCCCCCceEEEEec
Confidence 99999999999999997 3799999985
No 23
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=99.95 E-value=1.6e-28 Score=292.16 Aligned_cols=104 Identities=19% Similarity=0.271 Sum_probs=58.0
Q ss_pred cCCCCCHHHHHhhhccCCC-CceEEEEecCcccccCCCCCeEEEEeCCcccceeeccCCCccccceeeccHHhHHHhccc
Q 038192 442 LYAMLPAAAQLRVFEDVKE-GERLVVVSTNVAETSLTIPGIKYVVDTGREKVKKYNSANGIESYEIQWISKASAAQRAGR 520 (764)
Q Consensus 442 LHs~l~~~eQ~~vf~~~~~-g~rKVIlsTNIAEtSITIpdV~~VID~G~~K~~~yd~~~~~~~l~~~~iSkasa~QR~GR 520 (764)
.||+|++++|.++++.|+. |..+|+|||++||+|||||+|.+||+ ||++..... +.||+||
T Consensus 440 ~h~~~~~~eR~~v~~~F~~~g~~~vLVaT~v~~~GiDip~v~~VI~--------~d~p~s~~~----------~~Qr~GR 501 (696)
T 2ykg_A 440 QNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVIL--------YEYVGNVIK----------MIQTRGR 501 (696)
T ss_dssp ---------------------CCSCSEEEESSCCC---CCCSEEEE--------ESCC--CCC----------C------
T ss_pred cccCCCHHHHHHHHHHHHhcCCccEEEEechhhcCCcCccCCEEEE--------eCCCCCHHH----------HHHhhcc
Confidence 3789999999999999998 99999999999999999999999997 776655444 4599999
Q ss_pred cCCCCCCEEEEccCHHHh----------cccCCCCCCCcccccChhhHHHHHHHc
Q 038192 521 AGRTAPGHCYRLYSSAVF----------NNILPDFSCAEISKVPVDGVVLLMKSM 565 (764)
Q Consensus 521 AGR~~~G~cyrLys~~~~----------~~~l~~~~~PEI~r~~L~~~~L~lk~l 565 (764)
||.++|.||.|+++... +. +.....||+.+.+++.++++++.+
T Consensus 502 -GR~~~g~~~~l~~~~~~~~~~~~~~~~e~-~~~~~~~~~~~~~~~~~~~~i~~~ 554 (696)
T 2ykg_A 502 -GRARGSKCFLLTSNAGVIEKEQINMYKEK-MMNDSILRLQTWDEAVFREKILHI 554 (696)
T ss_dssp ----CCCEEEEEESCHHHHHHHHHHHHHHH-HHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred -CcCCCceEEEEecCCCHHHHHHHHHHHHH-HHHHHHHHhhccCHHHHHHHHHHH
Confidence 99999999999998766 33 335678889999999888887754
No 24
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=99.95 E-value=1.3e-27 Score=263.39 Aligned_cols=298 Identities=15% Similarity=0.139 Sum_probs=208.5
Q ss_pred chhhHHHHHHHHHcCCeEEEEecCCCCccccHHHHHHHhccCCCCCCCCCceEEEecccHHHHHHHHHHHHHHhCCCCCC
Q 038192 36 IVMMEQEIMEAVNDNSAVIICGETGCGKTTQVPQFLFEAGFGSNRCSSRSGRIGVTQPRRVAVLATAKRVAFELGLHLGK 115 (764)
Q Consensus 36 i~~~~~~Il~~l~~~~vviI~GeTGSGKTTqvPq~Lle~~~~~~~~~~~~~~Ii~tQPRRiaAisvA~RVa~E~g~~lG~ 115 (764)
.+.+|.+.++.+..++.++++++||||||.+...++++...... ...++++..|+|.+|.++++++.......-|.
T Consensus 31 ~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~~----~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~ 106 (391)
T 1xti_A 31 PSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVT----GQVSVLVMCHTRELAFQISKEYERFSKYMPNV 106 (391)
T ss_dssp CCHHHHHHHHHHTTTCCEEEECSSCSSHHHHHHHHHHHHCCCCT----TCCCEEEECSCHHHHHHHHHHHHHHTTTCTTC
T ss_pred CCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHhhcccC----CCeeEEEECCCHHHHHHHHHHHHHHHhhCCCe
Confidence 56778888898888888999999999999988877777643221 12589999999999999998776554332255
Q ss_pred EeeEEeccCccc-------CCCceEEEEchHHHHHHHHH-----------HHHHHHHHHh-hcccc---CC-ccCCCCce
Q 038192 116 EVGFQVRHDKKI-------GDSCSIKFMTDGILLRELKA-----------LYEKQQQLLR-SGQCI---EP-KDRVFPLK 172 (764)
Q Consensus 116 ~VGY~ir~e~~~-------s~~t~I~f~T~GiLLr~l~~-----------i~de~~~~l~-~~~~~---~~-~~~~~~lK 172 (764)
.|+.-....+.. ...++|+++|++.|++.+.. |+||+|.+.. .++.. .+ ....++.+
T Consensus 107 ~~~~~~g~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~vViDEaH~~~~~~~~~~~~~~~~~~~~~~~~ 186 (391)
T 1xti_A 107 KVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQ 186 (391)
T ss_dssp CEEEECTTSCHHHHHHHHHHSCCSEEEECHHHHHHHHHTTSSCCTTCSEEEECSHHHHTSSHHHHHHHHHHHHTSCSSSE
T ss_pred EEEEEeCCCCHHHHHHHHhcCCCCEEEECHHHHHHHHHcCCccccccCEEEEeCHHHHhhccchHHHHHHHHhhCCCCce
Confidence 566544432211 13468999999999987742 5689887643 12211 11 11235789
Q ss_pred EEEeecccchh--hhccccCCCCCCCeeeeCCcc----cceeEEecCCCchhhHHHHHHHHHHHHhhcCCCCCeEEecCC
Q 038192 173 LILMSATLRVE--DFISGGRLFRNPPIIEVPTRQ----FPVTVHFSKRTEIVDYIGQAYKKVMSIHKRLPQGGILVFVTG 246 (764)
Q Consensus 173 lILMSATl~~~--~f~~~~~~f~~~~vi~i~gr~----~pV~~~y~~~~~~~d~l~~~~~~v~~i~~~~~~g~ilvF~~g 246 (764)
+|+||||+... .+.. .++.++..+.+.... ..+..+|..... .+.. ..+..+....+.+.+|||+++
T Consensus 187 ~i~~SAT~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~----~~l~~~l~~~~~~~~lvf~~~ 259 (391)
T 1xti_A 187 VMMFSATLSKEIRPVCR--KFMQDPMEIFVDDETKLTLHGLQQYYVKLKD-NEKN----RKLFDLLDVLEFNQVVIFVKS 259 (391)
T ss_dssp EEEEESSCCSTHHHHHH--HHCSSCEEEECCCCCCCCCTTCEEEEEECCG-GGHH----HHHHHHHHHSCCSEEEEECSC
T ss_pred EEEEEeeCCHHHHHHHH--HHcCCCeEEEecCccccCcccceEEEEEcCc-hhHH----HHHHHHHHhcCCCcEEEEeCc
Confidence 99999999543 3332 456655555544322 123333332211 1211 122233333466789999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhhccccccCCccccCCCCCccccchhHHhHHHHHhhcCcccccccccCCCCCcccccCccc
Q 038192 247 QREVEYLCSKLRKASKQLLVNSSKENKGNQVVADSEPNATKDINMKEINEAFEIQGYSTEQQTDRFSSYDEDQFDIDDNE 326 (764)
Q Consensus 247 ~~~ie~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~ 326 (764)
...++.+++.|.+
T Consensus 260 ~~~~~~l~~~L~~------------------------------------------------------------------- 272 (391)
T 1xti_A 260 VQRCIALAQLLVE------------------------------------------------------------------- 272 (391)
T ss_dssp HHHHHHHHHHHHH-------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHh-------------------------------------------------------------------
Confidence 8888877666542
Q ss_pred cccccCccchhhhhhccchhhhhhhcCCCCCCCCcccccccchhhhhHHHHHHhhcCCCCCCCccccCCCCCCCCcCCCC
Q 038192 327 LDALSDSETESETEILGEDEKLVEQKCPMDGDDPVDVLKENWSLGSLKLAFEVLSGKNASGPSSQMKLSTPAIPEQCTEL 406 (764)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilvfl~g~~~i~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (764)
T Consensus 273 -------------------------------------------------------------------------------- 272 (391)
T 1xti_A 273 -------------------------------------------------------------------------------- 272 (391)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCCCCCCCCccccccCcccCCCCCeEEEecCCCCCHHHHHhhhccCCCCceEEEEecCcccccCCCCCeEEEEe
Q 038192 407 PPTPTPEQCPELSSPDVEKMGDNKRAGVGALCVLPLYAMLPAAAQLRVFEDVKEGERLVVVSTNVAETSLTIPGIKYVVD 486 (764)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~pLHs~l~~~eQ~~vf~~~~~g~rKVIlsTNIAEtSITIpdV~~VID 486 (764)
.++.+..+||+++.++|.++++.|.+|..+|++||+++++||+||++.+||+
T Consensus 273 ----------------------------~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gidi~~~~~Vi~ 324 (391)
T 1xti_A 273 ----------------------------QNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAFN 324 (391)
T ss_dssp ----------------------------TTCCEEEECTTSCHHHHHHHHHHHHTTCCSEEEESCCCSSCBCCTTEEEEEE
T ss_pred ----------------------------CCCcEEEEeCCCCHHHHHHHHHHHhcCCCcEEEECChhhcCCCcccCCEEEE
Confidence 0234678899999999999999999999999999999999999999999997
Q ss_pred CCcccceeeccCCCccccceeeccHHhHHHhccccCCCC-CCEEEEccCHHH
Q 038192 487 TGREKVKKYNSANGIESYEIQWISKASAAQRAGRAGRTA-PGHCYRLYSSAV 537 (764)
Q Consensus 487 ~G~~K~~~yd~~~~~~~l~~~~iSkasa~QR~GRAGR~~-~G~cyrLys~~~ 537 (764)
.+. |.|.+++.||+|||||.+ +|.||.+++...
T Consensus 325 ~~~------------------p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~ 358 (391)
T 1xti_A 325 YDM------------------PEDSDTYLHRVARAGRFGTKGLAITFVSDEN 358 (391)
T ss_dssp SSC------------------CSSHHHHHHHHCBCSSSCCCCEEEEEECSHH
T ss_pred eCC------------------CCCHHHHHHhcccccCCCCceEEEEEEcccc
Confidence 443 347788999999999986 599999999653
No 25
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=99.95 E-value=1e-27 Score=278.23 Aligned_cols=311 Identities=17% Similarity=0.196 Sum_probs=205.3
Q ss_pred chhhHHHHHHHHH--cCCeEEEEecCCCCccccHHHHHHHhccCCCCCCCCCceEEEecccHHHHHHHHHHHHHHhCCCC
Q 038192 36 IVMMEQEIMEAVN--DNSAVIICGETGCGKTTQVPQFLFEAGFGSNRCSSRSGRIGVTQPRRVAVLATAKRVAFELGLHL 113 (764)
Q Consensus 36 i~~~~~~Il~~l~--~~~vviI~GeTGSGKTTqvPq~Lle~~~~~~~~~~~~~~Ii~tQPRRiaAisvA~RVa~E~g~~l 113 (764)
...+|.+.++.+. +++.++++++||||||...-.++++.............++++..|+|.+|.++++++....+...
T Consensus 95 ~~~~Q~~~i~~~l~~~~~~~lv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~lil~Ptr~La~Q~~~~~~~~~~~~~ 174 (563)
T 3i5x_A 95 LTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVIVAPTRDLALQIEAEVKKIHDMNY 174 (563)
T ss_dssp CCHHHHHHHHHHHSSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSCCEEEECSSHHHHHHHHHHHHHHHHHCG
T ss_pred CCHHHHHHHHHHhcCCCCeEEEECCCCCCccHHHHHHHHHHHHhccccccCCeeEEEEcCcHHHHHHHHHHHHHHHhhcc
Confidence 4567777787777 56789999999999999755555543322111111235899999999999999998877533211
Q ss_pred ---CCEeeEEeccCcc-------cCCCceEEEEchHHHHHHHHH------------HHHHHHHHHhhccccCC-------
Q 038192 114 ---GKEVGFQVRHDKK-------IGDSCSIKFMTDGILLRELKA------------LYEKQQQLLRSGQCIEP------- 164 (764)
Q Consensus 114 ---G~~VGY~ir~e~~-------~s~~t~I~f~T~GiLLr~l~~------------i~de~~~~l~~~~~~~~------- 164 (764)
+..+..-+..... ....++|+|+|+|.|++.+.. |+||+|.++..++....
T Consensus 175 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~l~~~~f~~~~~~i~~~l 254 (563)
T 3i5x_A 175 GLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYSNKFFRFVDYKVLDEADRLLEIGFRDDLETISGIL 254 (563)
T ss_dssp GGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHHHCTTCCEEEEETHHHHTSTTTHHHHHHHHHHH
T ss_pred ccCceeEEEEECCcCHHHHHHHHhcCCCCEEEECcHHHHHHHHhccccccccceEEEEeCHHHHhccchHHHHHHHHHhh
Confidence 1122222222221 023578999999999988743 56899987655432110
Q ss_pred ----ccCCCCceEEEeecccch--hhhccccCCCCCCCeeeeCCc-------ccceeEEecCCCchhhHHHHHHHHHHHH
Q 038192 165 ----KDRVFPLKLILMSATLRV--EDFISGGRLFRNPPIIEVPTR-------QFPVTVHFSKRTEIVDYIGQAYKKVMSI 231 (764)
Q Consensus 165 ----~~~~~~lKlILMSATl~~--~~f~~~~~~f~~~~vi~i~gr-------~~pV~~~y~~~~~~~d~l~~~~~~v~~i 231 (764)
....++.++|+||||+.. ..+.. .+++.+..+.+... ...+...+.......+.+......+...
T Consensus 255 ~~~~~~~~~~~~~l~~SAT~~~~v~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 332 (563)
T 3i5x_A 255 NEKNSKSADNIKTLLFSATLDDKVQKLAN--NIMNKKECLFLDTVDKNEPEAHERIDQSVVISEKFANSIFAAVEHIKKQ 332 (563)
T ss_dssp HHHCSSCTTCCEEEEEESSCCTHHHHHTT--TTCCSSEEEEEESSCSSSCSSCTTEEEEEEEESSTTHHHHHHHHHHHHH
T ss_pred hhccccCccCceEEEEEccCCHHHHHHHH--HhcCCCceEEEeccCCCCccccccCceEEEECchhHhhHHHHHHHHHHH
Confidence 122357899999999963 44443 45554444333211 1112222211111122222233333332
Q ss_pred hh-cCCCCCeEEecCCHHHHHHHHHHHHHHHHHhhhhccccccCCccccCCCCCccccchhHHhHHHHHhhcCccccccc
Q 038192 232 HK-RLPQGGILVFVTGQREVEYLCSKLRKASKQLLVNSSKENKGNQVVADSEPNATKDINMKEINEAFEIQGYSTEQQTD 310 (764)
Q Consensus 232 ~~-~~~~g~ilvF~~g~~~ie~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~ 310 (764)
.. ..+.+.+|||+++...++.++..|++..
T Consensus 333 ~~~~~~~~~~iVF~~s~~~~~~l~~~L~~~~------------------------------------------------- 363 (563)
T 3i5x_A 333 IKERDSNYKAIIFAPTVKFTSFLCSILKNEF------------------------------------------------- 363 (563)
T ss_dssp HHHTTTCCEEEEECSCHHHHHHHHHHHHHHH-------------------------------------------------
T ss_pred HhhcCCCCcEEEEcCcHHHHHHHHHHHHHhc-------------------------------------------------
Confidence 22 2456789999999998888877775410
Q ss_pred ccCCCCCcccccCccccccccCccchhhhhhccchhhhhhhcCCCCCCCCcccccccchhhhhHHHHHHhhcCCCCCCCc
Q 038192 311 RFSSYDEDQFDIDDNELDALSDSETESETEILGEDEKLVEQKCPMDGDDPVDVLKENWSLGSLKLAFEVLSGKNASGPSS 390 (764)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilvfl~g~~~i~~l~~~~~~l~~~~~~~~~~ 390 (764)
T Consensus 364 -------------------------------------------------------------------------------- 363 (563)
T 3i5x_A 364 -------------------------------------------------------------------------------- 363 (563)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccCCCCCCCCcCCCCCCCCCCCCCCCCCCCccccccCcccCCCCCeEEEecCCCCCHHHHHhhhccCCCCceEEEEecC
Q 038192 391 QMKLSTPAIPEQCTELPPTPTPEQCPELSSPDVEKMGDNKRAGVGALCVLPLYAMLPAAAQLRVFEDVKEGERLVVVSTN 470 (764)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~pLHs~l~~~eQ~~vf~~~~~g~rKVIlsTN 470 (764)
..++.+..+||+|++.+|.++++.|..|..+|+|||+
T Consensus 364 -------------------------------------------~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vLvaT~ 400 (563)
T 3i5x_A 364 -------------------------------------------KKDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTD 400 (563)
T ss_dssp -------------------------------------------TTTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECG
T ss_pred -------------------------------------------cCCceEEEecCCCCHHHHHHHHHHHhcCCCCEEEEcc
Confidence 0124588899999999999999999999999999999
Q ss_pred cccccCCCCCeEEEEeCCcccceeeccCCCccccceeeccHHhHHHhccccCCCC-CCEEEEccCHHHh
Q 038192 471 VAETSLTIPGIKYVVDTGREKVKKYNSANGIESYEIQWISKASAAQRAGRAGRTA-PGHCYRLYSSAVF 538 (764)
Q Consensus 471 IAEtSITIpdV~~VID~G~~K~~~yd~~~~~~~l~~~~iSkasa~QR~GRAGR~~-~G~cyrLys~~~~ 538 (764)
++++||+||+|.+||+ ||++. |..++.||+|||||.+ +|.|+.+++....
T Consensus 401 ~~~~GiDip~v~~VI~--------~~~p~----------s~~~y~Qr~GRagR~g~~g~~i~~~~~~e~ 451 (563)
T 3i5x_A 401 VGARGMDFPNVHEVLQ--------IGVPS----------ELANYIHRIGRTARSGKEGSSVLFICKDEL 451 (563)
T ss_dssp GGTSSCCCTTCCEEEE--------ESCCS----------STTHHHHHHTTSSCTTCCEEEEEEEEGGGH
T ss_pred hhhcCCCcccCCEEEE--------ECCCC----------chhhhhhhcCccccCCCCceEEEEEchhHH
Confidence 9999999999999997 55333 5677889999999997 5999999997653
No 26
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=99.95 E-value=9.5e-28 Score=294.48 Aligned_cols=367 Identities=17% Similarity=0.223 Sum_probs=235.9
Q ss_pred CCCchhhHHHHHHHHHcCCeEEEEecCCCCccccHHHHHHHhccCCCCCCCCCceEEEecccHHHHHHHHHHHHHHhCCC
Q 038192 33 DLPIVMMEQEIMEAVNDNSAVIICGETGCGKTTQVPQFLFEAGFGSNRCSSRSGRIGVTQPRRVAVLATAKRVAFELGLH 112 (764)
Q Consensus 33 ~LPi~~~~~~Il~~l~~~~vviI~GeTGSGKTTqvPq~Lle~~~~~~~~~~~~~~Ii~tQPRRiaAisvA~RVa~E~g~~ 112 (764)
....+.+|.+.+.++.+++.++|+|+||||||+..-..++... .. ..+++++.|+|.+|.+.++++....+
T Consensus 84 ~f~L~~~Q~eai~~l~~g~~vLV~apTGSGKTlva~lai~~~l-~~------g~rvL~l~PtkaLa~Q~~~~l~~~~~-- 154 (1010)
T 2xgj_A 84 PFTLDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSL-KN------KQRVIYTSPIKALSNQKYRELLAEFG-- 154 (1010)
T ss_dssp SSCCCHHHHHHHHHHHHTCEEEEECCTTSCHHHHHHHHHHHHH-HT------TCEEEEEESSHHHHHHHHHHHHHHHS--
T ss_pred CCCCCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHHh-cc------CCeEEEECChHHHHHHHHHHHHHHhC--
Confidence 3457889999999999999999999999999997654454432 21 15899999999999999999988776
Q ss_pred CCCEeeEEeccCcccCCCceEEEEchHHHHHHHHH-----------HHHHHHHHHhhcccc----CCccCCCCceEEEee
Q 038192 113 LGKEVGFQVRHDKKIGDSCSIKFMTDGILLRELKA-----------LYEKQQQLLRSGQCI----EPKDRVFPLKLILMS 177 (764)
Q Consensus 113 lG~~VGY~ir~e~~~s~~t~I~f~T~GiLLr~l~~-----------i~de~~~~l~~~~~~----~~~~~~~~lKlILMS 177 (764)
.||. +.++....++++|+|||+|+|.+++.. |+||+|.+...+... .+....++.++|+||
T Consensus 155 ---~vgl-ltGd~~~~~~~~IvV~Tpe~L~~~L~~~~~~l~~l~lVViDEaH~l~d~~rg~~~e~il~~l~~~~~il~LS 230 (1010)
T 2xgj_A 155 ---DVGL-MTGDITINPDAGCLVMTTEILRSMLYRGSEVMREVAWVIFDEVHYMRDKERGVVWEETIILLPDKVRYVFLS 230 (1010)
T ss_dssp ---CEEE-ECSSCEECTTCSEEEEEHHHHHHHHHHTCTTGGGEEEEEEETGGGGGCTTTHHHHHHHHHHSCTTCEEEEEE
T ss_pred ---CEEE-EeCCCccCCCCCEEEEcHHHHHHHHHcCcchhhcCCEEEEechhhhcccchhHHHHHHHHhcCCCCeEEEEc
Confidence 4665 334445566789999999999988743 568988764432100 001123678999999
Q ss_pred ccc-chhhhccccCCCC-----CCCeeeeCCcccceeEEecCCC----c---------h-hhHH----------------
Q 038192 178 ATL-RVEDFISGGRLFR-----NPPIIEVPTRQFPVTVHFSKRT----E---------I-VDYI---------------- 221 (764)
Q Consensus 178 ATl-~~~~f~~~~~~f~-----~~~vi~i~gr~~pV~~~y~~~~----~---------~-~d~l---------------- 221 (764)
||+ +...|.. +++ .+.++..+.+..|++.++.... . . .++.
T Consensus 231 ATi~n~~e~a~---~l~~~~~~~~~vi~~~~rp~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 307 (1010)
T 2xgj_A 231 ATIPNAMEFAE---WICKIHSQPCHIVYTNFRPTPLQHYLFPAHGDGIYLVVDEKSTFREENFQKAMASISNQIGDDPNS 307 (1010)
T ss_dssp CCCTTHHHHHH---HHHHHHTSCEEEEEECCCSSCEEEEEEETTSSCCEEEECTTCCBCHHHHHHHHHTCC---------
T ss_pred CCCCCHHHHHH---HHHhhcCCCeEEEecCCCcccceEEEEecCCcceeeeeccccccchHHHHHHHHHHhhhhcccccc
Confidence 999 6666663 432 3566777888888876654211 0 0 0000
Q ss_pred --------------------HHHHHHHHHHhhcCCCCCeEEecCCHHHHHHHHHHHHHHHHHhhhhccccccCCccccCC
Q 038192 222 --------------------GQAYKKVMSIHKRLPQGGILVFVTGQREVEYLCSKLRKASKQLLVNSSKENKGNQVVADS 281 (764)
Q Consensus 222 --------------------~~~~~~v~~i~~~~~~g~ilvF~~g~~~ie~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~ 281 (764)
...+..+.........+.+|||++++..++.++..|....
T Consensus 308 ~~~~g~~~~~~k~~~~~~~~~~~l~~l~~~l~~~~~~~~IVF~~sr~~~e~la~~L~~~~-------------------- 367 (1010)
T 2xgj_A 308 TDSRGKKGQTYKGGSAKGDAKGDIYKIVKMIWKKKYNPVIVFSFSKRDCEELALKMSKLD-------------------- 367 (1010)
T ss_dssp ---------------------CHHHHHHHHHHHHTCCSEEEEESSHHHHHHHHHTTTTSC--------------------
T ss_pred cccccccccccccccccccchHHHHHHHHHHHhcCCCCEEEEECCHHHHHHHHHHHHhCC--------------------
Confidence 0011112222222344579999999999988877663200
Q ss_pred CCCccccchhHHhHHHHHhhcCcccccccccCCCCCcccccCccccccccCccchhhhhhccchhhhhhhcCCCCCCCCc
Q 038192 282 EPNATKDINMKEINEAFEIQGYSTEQQTDRFSSYDEDQFDIDDNELDALSDSETESETEILGEDEKLVEQKCPMDGDDPV 361 (764)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il 361 (764)
-........+...+... + .
T Consensus 368 ---~~~~~e~~~i~~~~~~~-------------------------~------------~--------------------- 386 (1010)
T 2xgj_A 368 ---FNSDDEKEALTKIFNNA-------------------------I------------A--------------------- 386 (1010)
T ss_dssp ---CCCHHHHHHHHHHHHHH-------------------------H------------T---------------------
T ss_pred ---CCChHHHHHHHHHHHHH-------------------------H------------H---------------------
Confidence 00000000011000000 0 0
Q ss_pred cccccc-chhhhhHHHHHHhhcCCCCCCCccccCCCCCCCCcCCCCCCCCCCCCCCCCCCCccccccCcccCCCCCeEEE
Q 038192 362 DVLKEN-WSLGSLKLAFEVLSGKNASGPSSQMKLSTPAIPEQCTELPPTPTPEQCPELSSPDVEKMGDNKRAGVGALCVL 440 (764)
Q Consensus 362 vfl~g~-~~i~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 440 (764)
.+.+. ..+..+......+ ...|.
T Consensus 387 -~l~~~d~~l~~~~~l~~~l-------------------------------------------------------~~gI~ 410 (1010)
T 2xgj_A 387 -LLPETDRELPQIKHILPLL-------------------------------------------------------RRGIG 410 (1010)
T ss_dssp -TSCGGGTTCHHHHHHHHHH-------------------------------------------------------HHTEE
T ss_pred -hcchhhhcchhHHHHHHHH-------------------------------------------------------hCCee
Confidence 00000 0000000000000 12388
Q ss_pred ecCCCCCHHHHHhhhccCCCCceEEEEecCcccccCCCCCeEEEEeCCcccceeeccCCCccccceeeccHHhHHHhccc
Q 038192 441 PLYAMLPAAAQLRVFEDVKEGERLVVVSTNVAETSLTIPGIKYVVDTGREKVKKYNSANGIESYEIQWISKASAAQRAGR 520 (764)
Q Consensus 441 pLHs~l~~~eQ~~vf~~~~~g~rKVIlsTNIAEtSITIpdV~~VID~G~~K~~~yd~~~~~~~l~~~~iSkasa~QR~GR 520 (764)
.+||+|++.+|..+++.|..|..|||+||+++++||+||++++||+. ...||... ..|+|.+++.||+||
T Consensus 411 ~~Hggl~~~eR~~ve~~F~~G~ikVLVAT~~la~GIDiP~~~vVI~~----~~kfd~~~------~rp~s~~~y~Qr~GR 480 (1010)
T 2xgj_A 411 IHHSGLLPILKEVIEILFQEGFLKVLFATETFSIGLNMPAKTVVFTS----VRKWDGQQ------FRWVSGGEYIQMSGR 480 (1010)
T ss_dssp EESTTSCHHHHHHHHHHHHTTCCSEEEEEGGGGGSTTCCBSEEEESC----SEEECSSC------EEECCHHHHHHHHTT
T ss_pred EECCCCCHHHHHHHHHHHhcCCCcEEEEehHhhccCCCCCceEEEeC----CcccCCcC------CccCCHHHHhHhhhh
Confidence 89999999999999999999999999999999999999999999984 23477543 368999999999999
Q ss_pred cCCCCC---CEEEEccCHH----HhcccCCCCCCCcccccChh---hHHHHHHH
Q 038192 521 AGRTAP---GHCYRLYSSA----VFNNILPDFSCAEISKVPVD---GVVLLMKS 564 (764)
Q Consensus 521 AGR~~~---G~cyrLys~~----~~~~~l~~~~~PEI~r~~L~---~~~L~lk~ 564 (764)
|||.+. |.||.++++. .+..++. ..++.++..+. ..+|.+..
T Consensus 481 AGR~G~d~~G~vi~l~~~~~e~~~~~~l~~--~~~~~l~s~f~~~~~~ilnll~ 532 (1010)
T 2xgj_A 481 AGRRGLDDRGIVIMMIDEKMEPQVAKGMVK--GQADRLDSAFHLGYNMILNLMR 532 (1010)
T ss_dssp BCCTTTCSSEEEEEEECSCCCHHHHHHHHS--CCCCCCCCCCCCCHHHHHHHHH
T ss_pred cccCCCCCceEEEEEECCCCCHHHHHHHHh--CCCcccccccCCcHHHHHHHHH
Confidence 999984 9999999854 3333322 34444444433 45666554
No 27
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=99.95 E-value=3.5e-27 Score=275.11 Aligned_cols=322 Identities=17% Similarity=0.206 Sum_probs=209.7
Q ss_pred hHHHhhhcCCC---chhhHHHHHHHHH--cCCeEEEEecCCCCccccHHHHHHHhccCCCCCCCCCceEEEecccHHHHH
Q 038192 25 NEVENNRKDLP---IVMMEQEIMEAVN--DNSAVIICGETGCGKTTQVPQFLFEAGFGSNRCSSRSGRIGVTQPRRVAVL 99 (764)
Q Consensus 25 ~~~~~~R~~LP---i~~~~~~Il~~l~--~~~vviI~GeTGSGKTTqvPq~Lle~~~~~~~~~~~~~~Ii~tQPRRiaAi 99 (764)
+++.+.-..+. ...+|.+.++.+. .++.++++++||||||...-.++++.............+++|..|+|.+|.
T Consensus 30 ~~l~~~l~~~g~~~~~~~Q~~~i~~il~~~~~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~lvl~Ptr~La~ 109 (579)
T 3sqw_A 30 KEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVIVAPTRDLAL 109 (579)
T ss_dssp HHHHHHHHTTTCSSCCHHHHHHHHHHHCSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSCCEEEECSSHHHHH
T ss_pred HHHHHHHHHCCCCCCCHHHHHHHHHHHccCCCeEEEEcCCCcHHHHHHHHHHHHHHHhccccccCCCeEEEEcchHHHHH
Confidence 34444433432 4567778887777 577899999999999997665565543222111112358999999999999
Q ss_pred HHHHHHHHHhCCCCC---CEeeEEeccCccc-------CCCceEEEEchHHHHHHHHH------------HHHHHHHHHh
Q 038192 100 ATAKRVAFELGLHLG---KEVGFQVRHDKKI-------GDSCSIKFMTDGILLRELKA------------LYEKQQQLLR 157 (764)
Q Consensus 100 svA~RVa~E~g~~lG---~~VGY~ir~e~~~-------s~~t~I~f~T~GiLLr~l~~------------i~de~~~~l~ 157 (764)
++++++........| ..+...+...... ...++|+|+|+|+|++.+.. |+||+|.++.
T Consensus 110 Q~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~~IlV~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~l~~ 189 (579)
T 3sqw_A 110 QIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYSNKFFRFVDYKVLDEADRLLE 189 (579)
T ss_dssp HHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHHHCTTCCEEEEETHHHHTS
T ss_pred HHHHHHHHHHhhcccccceEEEEEECCccHHHHHHHHhcCCCCEEEECHHHHHHHHHhccccccccCCEEEEEChHHhhc
Confidence 999988765421111 1122212222111 22578999999999998843 5689998766
Q ss_pred hccccCC-----------ccCCCCceEEEeecccch--hhhccccCCCCCCCeeeeCCc-------ccceeEEecCCCch
Q 038192 158 SGQCIEP-----------KDRVFPLKLILMSATLRV--EDFISGGRLFRNPPIIEVPTR-------QFPVTVHFSKRTEI 217 (764)
Q Consensus 158 ~~~~~~~-----------~~~~~~lKlILMSATl~~--~~f~~~~~~f~~~~vi~i~gr-------~~pV~~~y~~~~~~ 217 (764)
.++.... ....++.++|+||||+.. ..+.. .++..+..+.+... ...+...+......
T Consensus 190 ~gf~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~~v~~~~~--~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 267 (579)
T 3sqw_A 190 IGFRDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQKLAN--NIMNKKECLFLDTVDKNEPEAHERIDQSVVISEKF 267 (579)
T ss_dssp TTTHHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCTHHHHHTT--TTCCSSEEEEEESSCSSSCSSCTTEEEEEEEESST
T ss_pred CCCHHHHHHHHHHhhhhhcccccCceEEEEeccCChHHHHHHH--HHcCCCceEEEeecCccccccccccceEEEEecch
Confidence 5542111 112347899999999954 34442 45555444433211 11122222111111
Q ss_pred hhHHHHHHHHHHHHhh-cCCCCCeEEecCCHHHHHHHHHHHHHHHHHhhhhccccccCCccccCCCCCccccchhHHhHH
Q 038192 218 VDYIGQAYKKVMSIHK-RLPQGGILVFVTGQREVEYLCSKLRKASKQLLVNSSKENKGNQVVADSEPNATKDINMKEINE 296 (764)
Q Consensus 218 ~d~l~~~~~~v~~i~~-~~~~g~ilvF~~g~~~ie~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (764)
.+........+..... ..+.+.+|||+++...++.++..|++..
T Consensus 268 ~~~~~~~~~~l~~~~~~~~~~~~~iVF~~t~~~~~~l~~~L~~~~----------------------------------- 312 (579)
T 3sqw_A 268 ANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEF----------------------------------- 312 (579)
T ss_dssp THHHHHHHHHHHHHHHHTTTCCEEEEECSSHHHHHHHHHHHHHHH-----------------------------------
T ss_pred hhhHHHHHHHHHHHHhhcCCCCcEEEECCcHHHHHHHHHHHHHhh-----------------------------------
Confidence 2222222233332222 2456778999999998888877775410
Q ss_pred HHHhhcCcccccccccCCCCCcccccCccccccccCccchhhhhhccchhhhhhhcCCCCCCCCcccccccchhhhhHHH
Q 038192 297 AFEIQGYSTEQQTDRFSSYDEDQFDIDDNELDALSDSETESETEILGEDEKLVEQKCPMDGDDPVDVLKENWSLGSLKLA 376 (764)
Q Consensus 297 ~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilvfl~g~~~i~~l~~~ 376 (764)
T Consensus 313 -------------------------------------------------------------------------------- 312 (579)
T 3sqw_A 313 -------------------------------------------------------------------------------- 312 (579)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHhhcCCCCCCCccccCCCCCCCCcCCCCCCCCCCCCCCCCCCCccccccCcccCCCCCeEEEecCCCCCHHHHHhhhc
Q 038192 377 FEVLSGKNASGPSSQMKLSTPAIPEQCTELPPTPTPEQCPELSSPDVEKMGDNKRAGVGALCVLPLYAMLPAAAQLRVFE 456 (764)
Q Consensus 377 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~pLHs~l~~~eQ~~vf~ 456 (764)
..++.+..+||+|++.+|.++++
T Consensus 313 ---------------------------------------------------------~~~~~v~~~hg~~~~~~R~~~~~ 335 (579)
T 3sqw_A 313 ---------------------------------------------------------KKDLPILEFHGKITQNKRTSLVK 335 (579)
T ss_dssp ---------------------------------------------------------TTTSCEEEESTTSCHHHHHHHHH
T ss_pred ---------------------------------------------------------cCCCcEEEecCCCCHHHHHHHHH
Confidence 01245888999999999999999
Q ss_pred cCCCCceEEEEecCcccccCCCCCeEEEEeCCcccceeeccCCCccccceeeccHHhHHHhccccCCCC-CCEEEEccCH
Q 038192 457 DVKEGERLVVVSTNVAETSLTIPGIKYVVDTGREKVKKYNSANGIESYEIQWISKASAAQRAGRAGRTA-PGHCYRLYSS 535 (764)
Q Consensus 457 ~~~~g~rKVIlsTNIAEtSITIpdV~~VID~G~~K~~~yd~~~~~~~l~~~~iSkasa~QR~GRAGR~~-~G~cyrLys~ 535 (764)
.|..|..+|+|||+++++||+||+|.+||+ ||++. |..++.||+|||||.+ +|.|+.+|+.
T Consensus 336 ~F~~g~~~vLVaT~~~~~GiDip~v~~VI~--------~~~p~----------s~~~y~Qr~GRagR~g~~g~~i~~~~~ 397 (579)
T 3sqw_A 336 RFKKDESGILVCTDVGARGMDFPNVHEVLQ--------IGVPS----------ELANYIHRIGRTARSGKEGSSVLFICK 397 (579)
T ss_dssp HHHHCSSEEEEECGGGTSSCCCTTCCEEEE--------ESCCS----------STTHHHHHHTTSSCTTCCEEEEEEEEG
T ss_pred HhhcCCCeEEEEcchhhcCCCcccCCEEEE--------cCCCC----------CHHHhhhhccccccCCCCceEEEEEcc
Confidence 999999999999999999999999999997 55333 5577889999999998 4999999997
Q ss_pred HHh
Q 038192 536 AVF 538 (764)
Q Consensus 536 ~~~ 538 (764)
...
T Consensus 398 ~e~ 400 (579)
T 3sqw_A 398 DEL 400 (579)
T ss_dssp GGH
T ss_pred cHH
Confidence 653
No 28
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=99.95 E-value=2.3e-28 Score=288.11 Aligned_cols=287 Identities=18% Similarity=0.201 Sum_probs=199.4
Q ss_pred hcCCCchhhHHHHHHHHHcCCeEEEEecCCCCccccHHHHHHHhccCCCCCCCCCceEEEecccHHHHHHHHHHHHHHhC
Q 038192 31 RKDLPIVMMEQEIMEAVNDNSAVIICGETGCGKTTQVPQFLFEAGFGSNRCSSRSGRIGVTQPRRVAVLATAKRVAFELG 110 (764)
Q Consensus 31 R~~LPi~~~~~~Il~~l~~~~vviI~GeTGSGKTTqvPq~Lle~~~~~~~~~~~~~~Ii~tQPRRiaAisvA~RVa~E~g 110 (764)
|+.++|..... .+++.+++.++++|+||||||+++...+++.....+ .+++|+.|+|++|.++++++.
T Consensus 224 r~~~aIp~~l~--~~~l~~g~dvlv~apTGSGKTl~~ll~il~~l~~~~------~~~lilaPTr~La~Q~~~~l~---- 291 (673)
T 2wv9_A 224 RVEEPVPEAYN--PEMLKKRQLTVLDLHPGAGKTRRILPQIIKDAIQKR------LRTAVLAPTRVVAAEMAEALR---- 291 (673)
T ss_dssp ------CCCCC--GGGGSTTCEEEECCCTTTTTTTTHHHHHHHHHHHTT------CCEEEEESSHHHHHHHHHHTT----
T ss_pred ccccchHHHhh--HHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHHhCC------CcEEEEccHHHHHHHHHHHHh----
Confidence 44455544331 455568899999999999999997666665433221 578999999999999887664
Q ss_pred CCCCCEeeEEeccC-cccCCCceEEEEchHHHHHHHHH----------HHHHHHHH-----HhhccccCCccCCCCceEE
Q 038192 111 LHLGKEVGFQVRHD-KKIGDSCSIKFMTDGILLRELKA----------LYEKQQQL-----LRSGQCIEPKDRVFPLKLI 174 (764)
Q Consensus 111 ~~lG~~VGY~ir~e-~~~s~~t~I~f~T~GiLLr~l~~----------i~de~~~~-----l~~~~~~~~~~~~~~lKlI 174 (764)
+..++|+++.- ...++...+.++|.|.+.+.+.. |+||+|++ +..+++.... ..++.++|
T Consensus 292 ---~~~i~~~~~~l~~v~tp~~ll~~l~~~~l~~~l~~~~~l~~l~lvViDEaH~~~~~~~~~~~~l~~~~-~~~~~~vl 367 (673)
T 2wv9_A 292 ---GLPVRYLTPAVQREHSGNEIVDVMCHATLTHRLMSPLRVPNYNLFVMDEAHFTDPASIAARGYIATRV-EAGEAAAI 367 (673)
T ss_dssp ---TSCCEECCC---CCCCSCCCEEEEEHHHHHHHHHSSSCCCCCSEEEEESTTCCCHHHHHHHHHHHHHH-HTTSCEEE
T ss_pred ---cCCeeeecccccccCCHHHHHHHHHhhhhHHHHhcccccccceEEEEeCCcccCccHHHHHHHHHHhc-cccCCcEE
Confidence 22356666532 24466778999999999877632 56888876 4444433221 12578999
Q ss_pred EeecccchhhhccccCCCC-CCCeeeeCCcccceeEEecCCCchhhHHHHHHHHHHHHhhcCCCCCeEEecCCHHHHHHH
Q 038192 175 LMSATLRVEDFISGGRLFR-NPPIIEVPTRQFPVTVHFSKRTEIVDYIGQAYKKVMSIHKRLPQGGILVFVTGQREVEYL 253 (764)
Q Consensus 175 LMSATl~~~~f~~~~~~f~-~~~vi~i~gr~~pV~~~y~~~~~~~d~l~~~~~~v~~i~~~~~~g~ilvF~~g~~~ie~l 253 (764)
+||||+..... .+.. +.|++.+... ++.. .+...+. .+. ...+.+|||+++.++++.+
T Consensus 368 ~~SAT~~~~i~----~~~~~~~~i~~v~~~-~~~~-------~~~~~l~----~l~-----~~~~~~lVF~~s~~~~e~l 426 (673)
T 2wv9_A 368 FMTATPPGTSD----PFPDTNSPVHDVSSE-IPDR-------AWSSGFE----WIT-----DYAGKTVWFVASVKMSNEI 426 (673)
T ss_dssp EECSSCTTCCC----SSCCCSSCEEEEECC-CCSS-------CCSSCCH----HHH-----SCCSCEEEECSSHHHHHHH
T ss_pred EEcCCCChhhh----hhcccCCceEEEeee-cCHH-------HHHHHHH----HHH-----hCCCCEEEEECCHHHHHHH
Confidence 99999965432 2332 3555554432 1111 0111111 111 1467899999999988877
Q ss_pred HHHHHHHHHHhhhhccccccCCccccCCCCCccccchhHHhHHHHHhhcCcccccccccCCCCCcccccCccccccccCc
Q 038192 254 CSKLRKASKQLLVNSSKENKGNQVVADSEPNATKDINMKEINEAFEIQGYSTEQQTDRFSSYDEDQFDIDDNELDALSDS 333 (764)
Q Consensus 254 ~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (764)
++.|++
T Consensus 427 a~~L~~-------------------------------------------------------------------------- 432 (673)
T 2wv9_A 427 AQCLQR-------------------------------------------------------------------------- 432 (673)
T ss_dssp HHHHHT--------------------------------------------------------------------------
T ss_pred HHHHHh--------------------------------------------------------------------------
Confidence 666532
Q ss_pred cchhhhhhccchhhhhhhcCCCCCCCCcccccccchhhhhHHHHHHhhcCCCCCCCccccCCCCCCCCcCCCCCCCCCCC
Q 038192 334 ETESETEILGEDEKLVEQKCPMDGDDPVDVLKENWSLGSLKLAFEVLSGKNASGPSSQMKLSTPAIPEQCTELPPTPTPE 413 (764)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~~~ilvfl~g~~~i~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 413 (764)
T Consensus 433 -------------------------------------------------------------------------------- 432 (673)
T 2wv9_A 433 -------------------------------------------------------------------------------- 432 (673)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCccccccCcccCCCCCeEEEecCCCCCHHHHHhhhccCCCCceEEEEecCcccccCCCCCeEEEEeCCcccce
Q 038192 414 QCPELSSPDVEKMGDNKRAGVGALCVLPLYAMLPAAAQLRVFEDVKEGERLVVVSTNVAETSLTIPGIKYVVDTGREKVK 493 (764)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~~~~~~~~i~pLHs~l~~~eQ~~vf~~~~~g~rKVIlsTNIAEtSITIpdV~~VID~G~~K~~ 493 (764)
.++.+..+||. +|.++++.|++|..+|+||||++|+||||| |.+|||+|+....
T Consensus 433 ---------------------~g~~v~~lHg~----eR~~v~~~F~~g~~~VLVaTdv~e~GIDip-v~~VI~~g~~~~p 486 (673)
T 2wv9_A 433 ---------------------AGKRVIQLNRK----SYDTEYPKCKNGDWDFVITTDISEMGANFG-ASRVIDCRKSVKP 486 (673)
T ss_dssp ---------------------TTCCEEEECSS----SHHHHGGGGGTCCCSEEEECGGGGTTCCCC-CSEEEECCEECCE
T ss_pred ---------------------CCCeEEEeChH----HHHHHHHHHHCCCceEEEECchhhcceeeC-CcEEEECCCcccc
Confidence 02457889993 788999999999999999999999999999 9999999987764
Q ss_pred --eeccCCCccccceeeccHHhHHHhccccCCC--CCCEEEEccC
Q 038192 494 --KYNSANGIESYEIQWISKASAAQRAGRAGRT--APGHCYRLYS 534 (764)
Q Consensus 494 --~yd~~~~~~~l~~~~iSkasa~QR~GRAGR~--~~G~cyrLys 534 (764)
.||...++..+...|.|.+++.||+|||||. ++|.||.+|.
T Consensus 487 ~vi~da~~r~~ll~d~P~s~~~y~Qr~GRaGR~~g~~G~ai~l~~ 531 (673)
T 2wv9_A 487 TILDEGEGRVILSVPSAITSASAAQRRGRVGRNPSQIGDEYHYGG 531 (673)
T ss_dssp EEECSTTCEEEECCSEECCHHHHHHHHTTSSCCSSCCCEEEEECS
T ss_pred eeeecccccceecccCCCCHHHHHHHhhccCCCCCCCCEEEEEEe
Confidence 4787767777778999999999999999998 4699999985
No 29
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=99.95 E-value=5.2e-29 Score=286.17 Aligned_cols=325 Identities=18% Similarity=0.206 Sum_probs=183.0
Q ss_pred hhHHHHHHHHHcC--CeEEEEecCCCCccccHHHHHHHhccCCCCCCCCCceEEEecccHHHHHHHHHHHHHHhCC-CCC
Q 038192 38 MMEQEIMEAVNDN--SAVIICGETGCGKTTQVPQFLFEAGFGSNRCSSRSGRIGVTQPRRVAVLATAKRVAFELGL-HLG 114 (764)
Q Consensus 38 ~~~~~Il~~l~~~--~vviI~GeTGSGKTTqvPq~Lle~~~~~~~~~~~~~~Ii~tQPRRiaAisvA~RVa~E~g~-~lG 114 (764)
.+|.+.++++.++ +.++++|+||||||.+...++++...... ...+++++.|+|.+|.++++++....+. .++
T Consensus 144 ~~Q~~ai~~i~~~~~~~~ll~apTGsGKT~~~~~~il~~l~~~~----~~~~vLvl~P~~~L~~Q~~~~~~~~~~~~~~~ 219 (508)
T 3fho_A 144 KIQEKALPLLLSNPPRNMIGQSQSGTGKTAAFALTMLSRVDASV----PKPQAICLAPSRELARQIMDVVTEMGKYTEVK 219 (508)
T ss_dssp CTTSSSHHHHHCSSCCCEEEECCSSTTSHHHHHHHHHHHSCTTC----CSCCEEEECSCHHHHHHHHHHHHHHSTTSSCC
T ss_pred HHHHHHHHHHHcCCCCCEEEECCCCccHHHHHHHHHHHHHHhCC----CCceEEEEECcHHHHHHHHHHHHHhCCccCee
Confidence 3455566777665 88999999999999998888887654332 1358999999999999999988765432 222
Q ss_pred CEeeEEeccCcccCCCceEEEEchHHHHHHHHH-----------HHHHHHHHHh-hcccc---CC-ccCCCCceEEEeec
Q 038192 115 KEVGFQVRHDKKIGDSCSIKFMTDGILLRELKA-----------LYEKQQQLLR-SGQCI---EP-KDRVFPLKLILMSA 178 (764)
Q Consensus 115 ~~VGY~ir~e~~~s~~t~I~f~T~GiLLr~l~~-----------i~de~~~~l~-~~~~~---~~-~~~~~~lKlILMSA 178 (764)
..+++..........+++|+|+|++.|++.+.. |+||+|.... .++.. .+ ....++.++|+|||
T Consensus 220 ~~~~~~~~~~~~~~~~~~Ivv~T~~~l~~~l~~~~~~~~~~~lIIiDEaH~~~~~~~~~~~~~~i~~~~~~~~~~i~lSA 299 (508)
T 3fho_A 220 TAFGIKDSVPKGAKIDAQIVIGTPGTVMDLMKRRQLDARDIKVFVLDEADNMLDQQGLGDQSMRIKHLLPRNTQIVLFSA 299 (508)
T ss_dssp EEC----------CCCCSEEEECHHHHHHHHHTTCSCCTTCCEEEECCHHHHTTC--CHHHHHHHHHHSCTTCEEEEEES
T ss_pred EEEEeCCcccccccCCCCEEEECHHHHHHHHHcCCccccCCCEEEEechhhhcccCCcHHHHHHHHHhCCcCCeEEEEeC
Confidence 334444333333345789999999999998742 6689887644 22211 01 11235789999999
Q ss_pred ccc--hhhhccccCCCCCCCeeeeCCccccee---EEecCCCchhhHHHHHHHHHHHHhhcCCCCCeEEecCCHHHHHHH
Q 038192 179 TLR--VEDFISGGRLFRNPPIIEVPTRQFPVT---VHFSKRTEIVDYIGQAYKKVMSIHKRLPQGGILVFVTGQREVEYL 253 (764)
Q Consensus 179 Tl~--~~~f~~~~~~f~~~~vi~i~gr~~pV~---~~y~~~~~~~d~l~~~~~~v~~i~~~~~~g~ilvF~~g~~~ie~l 253 (764)
|+. .+.+.. .+++++..+.+..+.++.. ..+..... . ......+..+......+.+|||+++...++.+
T Consensus 300 T~~~~~~~~~~--~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~-~---~~k~~~l~~ll~~~~~~~~LVF~~s~~~a~~l 373 (508)
T 3fho_A 300 TFSERVEKYAE--RFAPNANEIRLKTEELSVEGIKQLYMDCQS-E---EHKYNVLVELYGLLTIGQSIIFCKKKDTAEEI 373 (508)
T ss_dssp CCSTHHHHHHH--HHSTTCEEECCCCCC----CCCCEEEEC---C---HHHHHHHHHHHC---CCCEEEBCSSTTTTTHH
T ss_pred CCCHHHHHHHH--HhcCCCeEEEeccccCCcccceEEEEECCc-h---HHHHHHHHHHHHhcCCCcEEEEECCHHHHHHH
Confidence 995 455543 4666666666655544332 11111100 0 11111222333333445666666655444433
Q ss_pred HHHHHHHHHHhhhhccccccCCccccCCCCCccccchhHHhHHHHHhhcCcccccccccCCCCCcccccCccccccccCc
Q 038192 254 CSKLRKASKQLLVNSSKENKGNQVVADSEPNATKDINMKEINEAFEIQGYSTEQQTDRFSSYDEDQFDIDDNELDALSDS 333 (764)
Q Consensus 254 ~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (764)
+..|.+
T Consensus 374 ~~~L~~-------------------------------------------------------------------------- 379 (508)
T 3fho_A 374 ARRMTA-------------------------------------------------------------------------- 379 (508)
T ss_dssp HHHHTT--------------------------------------------------------------------------
T ss_pred HHHHHh--------------------------------------------------------------------------
Confidence 322210
Q ss_pred cchhhhhhccchhhhhhhcCCCCCCCCcccccccchhhhhHHHHHHhhcCCCCCCCccccCCCCCCCCcCCCCCCCCCCC
Q 038192 334 ETESETEILGEDEKLVEQKCPMDGDDPVDVLKENWSLGSLKLAFEVLSGKNASGPSSQMKLSTPAIPEQCTELPPTPTPE 413 (764)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~~~ilvfl~g~~~i~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 413 (764)
T Consensus 380 -------------------------------------------------------------------------------- 379 (508)
T 3fho_A 380 -------------------------------------------------------------------------------- 379 (508)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCccccccCcccCCCCCeEEEecCCCCCHHHHHhhhccCCCCceEEEEecCcccccCCCCCeEEEEeCCcccce
Q 038192 414 QCPELSSPDVEKMGDNKRAGVGALCVLPLYAMLPAAAQLRVFEDVKEGERLVVVSTNVAETSLTIPGIKYVVDTGREKVK 493 (764)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~~~~~~~~i~pLHs~l~~~eQ~~vf~~~~~g~rKVIlsTNIAEtSITIpdV~~VID~G~~K~~ 493 (764)
.++.+..+||+++..+|.++++.|.+|..+|++||+++++||+||+|.+||+.+.++..
T Consensus 380 ---------------------~~~~v~~~hg~~~~~~R~~il~~f~~g~~~VLVaT~~l~~GiDip~v~~VI~~~~p~~~ 438 (508)
T 3fho_A 380 ---------------------DGHTVACLTGNLEGAQRDAIMDSFRVGTSKVLVTTNVIARGIDVSQVNLVVNYDMPLDQ 438 (508)
T ss_dssp ---------------------TTCCCCEEC-----CTTGGGTHHHHSSSCCCCEECC-----CCCTTCCEEEC----CC-
T ss_pred ---------------------CCCcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEeCChhhcCCCccCCCEEEEECCCCcc
Confidence 12447788999999999999999999999999999999999999999999975543211
Q ss_pred eeccCCCccccceeeccHHhHHHhccccCCCC-CCEEEEccCHHHhc---ccCCCCCCCcccccChhhHH
Q 038192 494 KYNSANGIESYEIQWISKASAAQRAGRAGRTA-PGHCYRLYSSAVFN---NILPDFSCAEISKVPVDGVV 559 (764)
Q Consensus 494 ~yd~~~~~~~l~~~~iSkasa~QR~GRAGR~~-~G~cyrLys~~~~~---~~l~~~~~PEI~r~~L~~~~ 559 (764)
..+-|..++.||+|||||.+ +|.|+.+++..... +.+.++...+|.+.|..+..
T Consensus 439 ------------~~~~s~~~~~Qr~GRagR~g~~g~~i~l~~~~~~~~~~~~i~~~~~~~i~~l~~~~~~ 496 (508)
T 3fho_A 439 ------------AGRPDPQTYLHRIGRTGRFGRVGVSINFVHDKKSWEEMNAIQEYFQRPITRVPTDDYE 496 (508)
T ss_dssp ----------------CTHHHHHTTSCCC-----CEEEEEECTTTSSSSHHHHHHHSCCCCC--------
T ss_pred ------------cCCCCHHHHHHHhhhcCCCCCCcEEEEEEeChHHHHHHHHHHHHHCCCcccCCCccHH
Confidence 12356778899999999998 49999999853211 11233445556666554433
No 30
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=99.95 E-value=1.3e-28 Score=271.41 Aligned_cols=301 Identities=16% Similarity=0.236 Sum_probs=108.3
Q ss_pred CchhhHHHHHHHHHcCCeEEEEecCCCCccccHHHHHHHhccCCCCCCCCCceEEEecccHHHHHHHHHHHHHHhCCCCC
Q 038192 35 PIVMMEQEIMEAVNDNSAVIICGETGCGKTTQVPQFLFEAGFGSNRCSSRSGRIGVTQPRRVAVLATAKRVAFELGLHLG 114 (764)
Q Consensus 35 Pi~~~~~~Il~~l~~~~vviI~GeTGSGKTTqvPq~Lle~~~~~~~~~~~~~~Ii~tQPRRiaAisvA~RVa~E~g~~lG 114 (764)
.-+.+|.+.+..+.+++.++++++||||||.+...++++...... ...++++..|+|.+|.++++++.. +....|
T Consensus 43 ~~~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~l~~~~----~~~~~lil~P~~~L~~q~~~~~~~-~~~~~~ 117 (394)
T 1fuu_A 43 EPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTSV----KAPQALMLAPTRELALQIQKVVMA-LAFHMD 117 (394)
T ss_dssp SCCHHHHHHHHHHHHTCCEEECCCSSHHHHHHHHHHHHHHCCTTC----CSCCEEEECSSHHHHHHHHHHHHH-HTTTSC
T ss_pred CCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhhccC----CCCCEEEEcCCHHHHHHHHHHHHH-HhccCC
Confidence 345677788888888888999999999999988877777643321 135899999999999999887754 444445
Q ss_pred CEeeEEeccCccc-----CCCceEEEEchHHHHHHHHH-----------HHHHHHHHHhhccccCC----ccCCCCceEE
Q 038192 115 KEVGFQVRHDKKI-----GDSCSIKFMTDGILLRELKA-----------LYEKQQQLLRSGQCIEP----KDRVFPLKLI 174 (764)
Q Consensus 115 ~~VGY~ir~e~~~-----s~~t~I~f~T~GiLLr~l~~-----------i~de~~~~l~~~~~~~~----~~~~~~lKlI 174 (764)
..|+......+.. -.+++|+|+|+|.|++.+.. |+||+|.+...++...+ ....++.++|
T Consensus 118 ~~~~~~~g~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~vIiDEah~~~~~~~~~~~~~~~~~~~~~~~~i 197 (394)
T 1fuu_A 118 IKVHACIGGTSFVEDAEGLRDAQIVVGTPGRVFDNIQRRRFRTDKIKMFILDEADEMLSSGFKEQIYQIFTLLPPTTQVV 197 (394)
T ss_dssp CCEEEECSSCCHHHHHHHHHHCSEEEECHHHHHHHHHTTSSCCTTCCEEEEETHHHHHHTTCHHHHHHHHHHSCTTCEEE
T ss_pred eeEEEEeCCCchHHHHhhcCCCCEEEECHHHHHHHHHhCCcchhhCcEEEEEChHHhhCCCcHHHHHHHHHhCCCCceEE
Confidence 5555444332211 12578999999999998852 57999987655432111 1223678999
Q ss_pred Eeecccchh--hhccccCCCCCCCeeeeCCcccce---eEEecCCCchhhHHHHHHHHHHHHhhcCCCCCeEEecCCHHH
Q 038192 175 LMSATLRVE--DFISGGRLFRNPPIIEVPTRQFPV---TVHFSKRTEIVDYIGQAYKKVMSIHKRLPQGGILVFVTGQRE 249 (764)
Q Consensus 175 LMSATl~~~--~f~~~~~~f~~~~vi~i~gr~~pV---~~~y~~~~~~~d~l~~~~~~v~~i~~~~~~g~ilvF~~g~~~ 249 (764)
+||||+... .+.. .++.++..+.+....... ..+|..... .++.. ..+..+....+
T Consensus 198 ~~SAT~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~---~~l~~~~~~~~------------- 258 (394)
T 1fuu_A 198 LLSATMPNDVLEVTT--KFMRNPVRILVKKDELTLEGIKQFYVNVEE-EEYKY---ECLTDLYDSIS------------- 258 (394)
T ss_dssp EECSSCCHHHHHHHH--HHCCSCEEEEECC--------------------------------------------------
T ss_pred EEEEecCHHHHHHHH--HhcCCCeEEEecCccccCCCceEEEEEcCc-hhhHH---HHHHHHHhcCC-------------
Confidence 999999543 2222 456554444433322111 111110000 00000 00001111111
Q ss_pred HHHHHHHHHHHHHHhhhhccccccCCccccCCCCCccccchhHHhHHHHHhhcCcccccccccCCCCCcccccCcccccc
Q 038192 250 VEYLCSKLRKASKQLLVNSSKENKGNQVVADSEPNATKDINMKEINEAFEIQGYSTEQQTDRFSSYDEDQFDIDDNELDA 329 (764)
Q Consensus 250 ie~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~ 329 (764)
T Consensus 259 -------------------------------------------------------------------------------- 258 (394)
T 1fuu_A 259 -------------------------------------------------------------------------------- 258 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccCccchhhhhhccchhhhhhhcCCCCCCCCcccccccchhhhhHHHHHHhhcCCCCCCCccccCCCCCCCCcCCCCCCC
Q 038192 330 LSDSETESETEILGEDEKLVEQKCPMDGDDPVDVLKENWSLGSLKLAFEVLSGKNASGPSSQMKLSTPAIPEQCTELPPT 409 (764)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilvfl~g~~~i~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 409 (764)
.+.+|||.+.......+...+.
T Consensus 259 ---------------------------~~~~lVf~~~~~~~~~l~~~L~------------------------------- 280 (394)
T 1fuu_A 259 ---------------------------VTQAVIFCNTRRKVEELTTKLR------------------------------- 280 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ---------------------------CCcEEEEECCHHHHHHHHHHHH-------------------------------
Confidence 2234555555443333322111
Q ss_pred CCCCCCCCCCCCccccccCcccCCCCCeEEEecCCCCCHHHHHhhhccCCCCceEEEEecCcccccCCCCCeEEEEeCCc
Q 038192 410 PTPEQCPELSSPDVEKMGDNKRAGVGALCVLPLYAMLPAAAQLRVFEDVKEGERLVVVSTNVAETSLTIPGIKYVVDTGR 489 (764)
Q Consensus 410 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~pLHs~l~~~eQ~~vf~~~~~g~rKVIlsTNIAEtSITIpdV~~VID~G~ 489 (764)
..++.+..+||+++.++|.++++.+.+|..+|++||+++++||++|++.+||+.+.
T Consensus 281 ------------------------~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gldi~~~~~Vi~~~~ 336 (394)
T 1fuu_A 281 ------------------------NDKFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTDLLARGIDVQQVSLVINYDL 336 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ------------------------HcCCeEEEeeCCCCHHHHHHHHHHHHCCCCcEEEECChhhcCCCcccCCEEEEeCC
Confidence 02356888999999999999999999999999999999999999999999997443
Q ss_pred ccceeeccCCCccccceeeccHHhHHHhccccCCCC-CCEEEEccCHHHhc
Q 038192 490 EKVKKYNSANGIESYEIQWISKASAAQRAGRAGRTA-PGHCYRLYSSAVFN 539 (764)
Q Consensus 490 ~K~~~yd~~~~~~~l~~~~iSkasa~QR~GRAGR~~-~G~cyrLys~~~~~ 539 (764)
|.|.+++.||+|||||.+ +|.||.+|++..+.
T Consensus 337 ------------------p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~ 369 (394)
T 1fuu_A 337 ------------------PANKENYIHRIGRGGRFGRKGVAINFVTNEDVG 369 (394)
T ss_dssp ---------------------------------------------------
T ss_pred ------------------CCCHHHHHHHcCcccCCCCCceEEEEEchhHHH
Confidence 446778889999999996 59999999988654
No 31
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=99.95 E-value=2e-27 Score=256.01 Aligned_cols=284 Identities=20% Similarity=0.225 Sum_probs=199.9
Q ss_pred CchhhHHHHHHHHHcCCeEEEEecCCCCccccHHHHHHHhccCCCCCCCCCceEEEecccHHHHHHHHHHHHHHhCCCCC
Q 038192 35 PIVMMEQEIMEAVNDNSAVIICGETGCGKTTQVPQFLFEAGFGSNRCSSRSGRIGVTQPRRVAVLATAKRVAFELGLHLG 114 (764)
Q Consensus 35 Pi~~~~~~Il~~l~~~~vviI~GeTGSGKTTqvPq~Lle~~~~~~~~~~~~~~Ii~tQPRRiaAisvA~RVa~E~g~~lG 114 (764)
..+.+|.++++++.+++.++++++||||||.+...++++.+ .++++..|+|.++.++++++.+ .+...|
T Consensus 16 ~l~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~~----------~~~liv~P~~~L~~q~~~~~~~-~~~~~~ 84 (337)
T 2z0m_A 16 NFTEVQSKTIPLMLQGKNVVVRAKTGSGKTAAYAIPILELG----------MKSLVVTPTRELTRQVASHIRD-IGRYMD 84 (337)
T ss_dssp SCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHT----------CCEEEECSSHHHHHHHHHHHHH-HTTTSC
T ss_pred CCCHHHHHHHHHHhcCCCEEEEcCCCCcHHHHHHHHHHhhc----------CCEEEEeCCHHHHHHHHHHHHH-HhhhcC
Confidence 35678888999998888899999999999999888888752 4788999999999999997764 444455
Q ss_pred CEeeEEeccCccc-----CCCceEEEEchHHHHHHHHH-----------HHHHHHHHHhhccccCC----ccCCCCceEE
Q 038192 115 KEVGFQVRHDKKI-----GDSCSIKFMTDGILLRELKA-----------LYEKQQQLLRSGQCIEP----KDRVFPLKLI 174 (764)
Q Consensus 115 ~~VGY~ir~e~~~-----s~~t~I~f~T~GiLLr~l~~-----------i~de~~~~l~~~~~~~~----~~~~~~lKlI 174 (764)
..|+......... -.+++|+|+|++.|++.+.. |+||+|.+...++...+ ....+..+++
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDEah~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (337)
T 2z0m_A 85 TKVAEVYGGMPYKAQINRVRNADIVVATPGRLLDLWSKGVIDLSSFEIVIIDEADLMFEMGFIDDIKIILAQTSNRKITG 164 (337)
T ss_dssp CCEEEECTTSCHHHHHHHHTTCSEEEECHHHHHHHHHTTSCCGGGCSEEEEESHHHHHHTTCHHHHHHHHHHCTTCSEEE
T ss_pred CcEEEEECCcchHHHHhhcCCCCEEEECHHHHHHHHHcCCcchhhCcEEEEEChHHhhccccHHHHHHHHhhCCcccEEE
Confidence 5565544332211 13478999999999998742 56999987655532111 1123467889
Q ss_pred Eeecccchhh--hccccCCCCCCCeeeeCCcccceeEEecCCCchhhHHHHHHHHHHHHhhcCCCCCeEEecCCHHHHHH
Q 038192 175 LMSATLRVED--FISGGRLFRNPPIIEVPTRQFPVTVHFSKRTEIVDYIGQAYKKVMSIHKRLPQGGILVFVTGQREVEY 252 (764)
Q Consensus 175 LMSATl~~~~--f~~~~~~f~~~~vi~i~gr~~pV~~~y~~~~~~~d~l~~~~~~v~~i~~~~~~g~ilvF~~g~~~ie~ 252 (764)
+||||+..+. +.. .++.+...+........+...|.... .++. . ..+.......+.+|||+++.+.++.
T Consensus 165 ~~SAT~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-~----~~~~~~~~~~~~~lvf~~~~~~~~~ 235 (337)
T 2z0m_A 165 LFSATIPEEIRKVVK--DFITNYEEIEACIGLANVEHKFVHVK--DDWR-S----KVQALRENKDKGVIVFVRTRNRVAK 235 (337)
T ss_dssp EEESCCCHHHHHHHH--HHSCSCEEEECSGGGGGEEEEEEECS--SSSH-H----HHHHHHTCCCSSEEEECSCHHHHHH
T ss_pred EEeCcCCHHHHHHHH--HhcCCceeeecccccCCceEEEEEeC--hHHH-H----HHHHHHhCCCCcEEEEEcCHHHHHH
Confidence 9999995542 222 46666555544433334444333211 1111 1 1122233456778888888765554
Q ss_pred HHHHHHHHHHHhhhhccccccCCccccCCCCCccccchhHHhHHHHHhhcCcccccccccCCCCCcccccCccccccccC
Q 038192 253 LCSKLRKASKQLLVNSSKENKGNQVVADSEPNATKDINMKEINEAFEIQGYSTEQQTDRFSSYDEDQFDIDDNELDALSD 332 (764)
Q Consensus 253 l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~ 332 (764)
+++.|
T Consensus 236 l~~~l--------------------------------------------------------------------------- 240 (337)
T 2z0m_A 236 LVRLF--------------------------------------------------------------------------- 240 (337)
T ss_dssp HHTTC---------------------------------------------------------------------------
T ss_pred HHHHh---------------------------------------------------------------------------
Confidence 32110
Q ss_pred ccchhhhhhccchhhhhhhcCCCCCCCCcccccccchhhhhHHHHHHhhcCCCCCCCccccCCCCCCCCcCCCCCCCCCC
Q 038192 333 SETESETEILGEDEKLVEQKCPMDGDDPVDVLKENWSLGSLKLAFEVLSGKNASGPSSQMKLSTPAIPEQCTELPPTPTP 412 (764)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ilvfl~g~~~i~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (764)
T Consensus 241 -------------------------------------------------------------------------------- 240 (337)
T 2z0m_A 241 -------------------------------------------------------------------------------- 240 (337)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCCccccccCcccCCCCCeEEEecCCCCCHHHHHhhhccCCCCceEEEEecCcccccCCCCCeEEEEeCCcccc
Q 038192 413 EQCPELSSPDVEKMGDNKRAGVGALCVLPLYAMLPAAAQLRVFEDVKEGERLVVVSTNVAETSLTIPGIKYVVDTGREKV 492 (764)
Q Consensus 413 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~pLHs~l~~~eQ~~vf~~~~~g~rKVIlsTNIAEtSITIpdV~~VID~G~~K~ 492 (764)
. .+..+||+++..+|.++++.+.+|..+|++||+++++||++|++.+||+.+
T Consensus 241 ----------------------~--~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gid~~~~~~Vi~~~---- 292 (337)
T 2z0m_A 241 ----------------------D--NAIELRGDLPQSVRNRNIDAFREGEYDMLITTDVASRGLDIPLVEKVINFD---- 292 (337)
T ss_dssp ----------------------T--TEEEECTTSCHHHHHHHHHHHHTTSCSEEEECHHHHTTCCCCCBSEEEESS----
T ss_pred ----------------------h--hhhhhcCCCCHHHHHHHHHHHHcCCCcEEEEcCccccCCCccCCCEEEEec----
Confidence 0 256789999999999999999999999999999999999999999999844
Q ss_pred eeeccCCCccccceeeccHHhHHHhccccCCCC-CCEEEEccCH
Q 038192 493 KKYNSANGIESYEIQWISKASAAQRAGRAGRTA-PGHCYRLYSS 535 (764)
Q Consensus 493 ~~yd~~~~~~~l~~~~iSkasa~QR~GRAGR~~-~G~cyrLys~ 535 (764)
+ |.|.+++.||+|||||.+ +|.|+.+++.
T Consensus 293 ----~----------~~s~~~~~Q~~GR~gR~g~~g~~~~~~~~ 322 (337)
T 2z0m_A 293 ----A----------PQDLRTYIHRIGRTGRMGRKGEAITFILN 322 (337)
T ss_dssp ----C----------CSSHHHHHHHHTTBCGGGCCEEEEEEESS
T ss_pred ----C----------CCCHHHhhHhcCccccCCCCceEEEEEeC
Confidence 3 346788899999999996 5999999983
No 32
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=99.95 E-value=8.1e-28 Score=270.64 Aligned_cols=269 Identities=20% Similarity=0.179 Sum_probs=187.6
Q ss_pred CCeEEEEecCCCCccccHHHHHHHhccCCCCCCCCCceEEEecccHHHHHHHHHHHHHHhCCCCCCEeeEEecc-CcccC
Q 038192 50 NSAVIICGETGCGKTTQVPQFLFEAGFGSNRCSSRSGRIGVTQPRRVAVLATAKRVAFELGLHLGKEVGFQVRH-DKKIG 128 (764)
Q Consensus 50 ~~vviI~GeTGSGKTTqvPq~Lle~~~~~~~~~~~~~~Ii~tQPRRiaAisvA~RVa~E~g~~lG~~VGY~ir~-e~~~s 128 (764)
+++++++|+||||||+.....+++.....+ .+++++.|+|++|.++++.+. |..|+|..+. +...+
T Consensus 2 g~~~lv~a~TGsGKT~~~l~~~l~~~~~~g------~~~lvl~Pt~~La~Q~~~~~~-------~~~v~~~~~~~~~~~~ 68 (431)
T 2v6i_A 2 RELTVLDLHPGAGKTRRVLPQLVREAVKKR------LRTVILAPTRVVASEMYEALR-------GEPIRYMTPAVQSERT 68 (431)
T ss_dssp CCEEEEECCTTSCTTTTHHHHHHHHHHHTT------CCEEEEESSHHHHHHHHHHTT-------TSCEEEC---------
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHHhCC------CCEEEECcHHHHHHHHHHHhC-------CCeEEEEecCccccCC
Confidence 678999999999999997555554333222 489999999999988877553 5567777665 34445
Q ss_pred CCceEEEEchHHHHHHHHH----------HHHHHHHH-----HhhccccCCccCCCCceEEEeecccchhhhccccCCCC
Q 038192 129 DSCSIKFMTDGILLRELKA----------LYEKQQQL-----LRSGQCIEPKDRVFPLKLILMSATLRVEDFISGGRLFR 193 (764)
Q Consensus 129 ~~t~I~f~T~GiLLr~l~~----------i~de~~~~-----l~~~~~~~~~~~~~~lKlILMSATl~~~~f~~~~~~f~ 193 (764)
++..+.++|.|.+.+.+.. |+||+|++ ...+.+... ...++.++|+||||+..... .+..
T Consensus 69 ~~~~~~~~~~~~l~~~l~~~~~~~~l~~vViDEaH~~~~~~~~~~~~l~~~-~~~~~~~~l~~SAT~~~~~~----~~~~ 143 (431)
T 2v6i_A 69 GNEIVDFMCHSTFTMKLLQGVRVPNYNLYIMDEAHFLDPASVAARGYIETR-VSMGDAGAIFMTATPPGTTE----AFPP 143 (431)
T ss_dssp CCCSEEEEEHHHHHHHHHHTCCCCCCSEEEEESTTCCSHHHHHHHHHHHHH-HHTTSCEEEEEESSCTTCCC----SSCC
T ss_pred CCceEEEEchHHHHHHHhcCccccCCCEEEEeCCccCCccHHHHHHHHHHH-hhCCCCcEEEEeCCCCcchh----hhcC
Confidence 6788999999999887643 56888764 111111111 12367999999999965421 2322
Q ss_pred -CCCeeeeCCcccceeEEecCCCchhhHHHHHHHHHHHHhhcCCCCCeEEecCCHHHHHHHHHHHHHHHHHhhhhccccc
Q 038192 194 -NPPIIEVPTRQFPVTVHFSKRTEIVDYIGQAYKKVMSIHKRLPQGGILVFVTGQREVEYLCSKLRKASKQLLVNSSKEN 272 (764)
Q Consensus 194 -~~~vi~i~gr~~pV~~~y~~~~~~~d~l~~~~~~v~~i~~~~~~g~ilvF~~g~~~ie~l~~~L~~~~~~~~~~~~~~~ 272 (764)
+.|++.+++. +|... ....+. . + . ...+.++||+++.++++.+++.|++
T Consensus 144 ~~~~i~~~~~~-~~~~~-------~~~~~~----~---l-~-~~~~~~lVF~~~~~~~~~l~~~L~~------------- 193 (431)
T 2v6i_A 144 SNSPIIDEETR-IPDKA-------WNSGYE----W---I-T-EFDGRTVWFVHSIKQGAEIGTCLQK------------- 193 (431)
T ss_dssp CSSCCEEEECC-CCSSC-------CSSCCH----H---H-H-SCSSCEEEECSSHHHHHHHHHHHHH-------------
T ss_pred CCCceeecccc-CCHHH-------HHHHHH----H---H-H-cCCCCEEEEeCCHHHHHHHHHHHHH-------------
Confidence 3555555432 11110 011111 0 1 1 1357899999999988887766643
Q ss_pred cCCccccCCCCCccccchhHHhHHHHHhhcCcccccccccCCCCCcccccCccccccccCccchhhhhhccchhhhhhhc
Q 038192 273 KGNQVVADSEPNATKDINMKEINEAFEIQGYSTEQQTDRFSSYDEDQFDIDDNELDALSDSETESETEILGEDEKLVEQK 352 (764)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (764)
T Consensus 194 -------------------------------------------------------------------------------- 193 (431)
T 2v6i_A 194 -------------------------------------------------------------------------------- 193 (431)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCcccccccchhhhhHHHHHHhhcCCCCCCCccccCCCCCCCCcCCCCCCCCCCCCCCCCCCCccccccCcccC
Q 038192 353 CPMDGDDPVDVLKENWSLGSLKLAFEVLSGKNASGPSSQMKLSTPAIPEQCTELPPTPTPEQCPELSSPDVEKMGDNKRA 432 (764)
Q Consensus 353 ~~~~~~~ilvfl~g~~~i~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 432 (764)
T Consensus 194 -------------------------------------------------------------------------------- 193 (431)
T 2v6i_A 194 -------------------------------------------------------------------------------- 193 (431)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCeEEEecCCCCCHHHHHhhhccCCCCceEEEEecCcccccCCCCCeEEEEeCCcccceeeccCCCccccceeeccHH
Q 038192 433 GVGALCVLPLYAMLPAAAQLRVFEDVKEGERLVVVSTNVAETSLTIPGIKYVVDTGREKVKKYNSANGIESYEIQWISKA 512 (764)
Q Consensus 433 ~~~~~~i~pLHs~l~~~eQ~~vf~~~~~g~rKVIlsTNIAEtSITIpdV~~VID~G~~K~~~yd~~~~~~~l~~~~iSka 512 (764)
.++.+..+||. ++.++++.|.+|..+|+|||+++|+||+|| +.+|||+|..+...|| ..++......|.|.+
T Consensus 194 --~~~~v~~lhg~----~r~~~~~~f~~g~~~vLVaT~v~e~GiDip-~~~VI~~g~~~~~v~d-~~~~vi~~~~p~~~~ 265 (431)
T 2v6i_A 194 --AGKKVLYLNRK----TFESEYPKCKSEKWDFVITTDISEMGANFK-ADRVIDPRKTIKPILL-DGRVSMQGPIAITPA 265 (431)
T ss_dssp --TTCCEEEESTT----THHHHTTHHHHSCCSEEEECGGGGTSCCCC-CSEEEECCEEEEEEEE-TTEEEEEEEEECCHH
T ss_pred --cCCeEEEeCCc----cHHHHHHhhcCCCCeEEEECchHHcCcccC-CcEEEecCccccceec-ccceeecccccCCHH
Confidence 01347788987 577889999999999999999999999999 9999999999999999 667777888999999
Q ss_pred hHHHhccccCCCCC-CEEEEccC
Q 038192 513 SAAQRAGRAGRTAP-GHCYRLYS 534 (764)
Q Consensus 513 sa~QR~GRAGR~~~-G~cyrLys 534 (764)
++.||+|||||.++ +.|+-+|.
T Consensus 266 ~~~Qr~GR~GR~g~~~~~~~~~~ 288 (431)
T 2v6i_A 266 SAAQRRGRIGRNPEKLGDIYAYS 288 (431)
T ss_dssp HHHHHHTTSSCCTTCCCCEEEEC
T ss_pred HHHHhhhccCCCCCCCCeEEEEc
Confidence 99999999999985 55666665
No 33
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=99.94 E-value=1.5e-27 Score=304.88 Aligned_cols=430 Identities=15% Similarity=0.118 Sum_probs=268.7
Q ss_pred hhHHHHHHHH-HcCCeEEEEecCCCCccccHHHHHHHhccCCCCCCCCCceEEEecccHHHHHHHHHHHHHHhCCCCCCE
Q 038192 38 MMEQEIMEAV-NDNSAVIICGETGCGKTTQVPQFLFEAGFGSNRCSSRSGRIGVTQPRRVAVLATAKRVAFELGLHLGKE 116 (764)
Q Consensus 38 ~~~~~Il~~l-~~~~vviI~GeTGSGKTTqvPq~Lle~~~~~~~~~~~~~~Ii~tQPRRiaAisvA~RVa~E~g~~lG~~ 116 (764)
..|.+++.++ ..++.++|+|+||||||+..-..+++.....++ ++++++.|+|.+|.+.++.+.+.++..+|..
T Consensus 929 piQ~q~~~~l~~~~~nvlv~APTGSGKTliaelail~~l~~~~~-----~kavyi~P~raLa~q~~~~~~~~f~~~~g~~ 1003 (1724)
T 4f92_B 929 PIQTQVFNTVYNSDDNVFVGAPTGSGKTICAEFAILRMLLQSSE-----GRCVYITPMEALAEQVYMDWYEKFQDRLNKK 1003 (1724)
T ss_dssp HHHHHHHHHHHSCCSCEEEECCTTSCCHHHHHHHHHHHHHHCTT-----CCEEEECSCHHHHHHHHHHHHHHHTTTSCCC
T ss_pred HHHHHHHHHHhcCCCcEEEEeCCCCCchHHHHHHHHHHHHhCCC-----CEEEEEcChHHHHHHHHHHHHHHhchhcCCE
Confidence 3456666666 567789999999999999877777765433222 5899999999999999999998899888988
Q ss_pred eeEEeccCc---ccCCCceEEEEchHHHHHHHHH-------------HHHHHHHHHhhc----------cccCCccCCCC
Q 038192 117 VGFQVRHDK---KIGDSCSIKFMTDGILLRELKA-------------LYEKQQQLLRSG----------QCIEPKDRVFP 170 (764)
Q Consensus 117 VGY~ir~e~---~~s~~t~I~f~T~GiLLr~l~~-------------i~de~~~~l~~~----------~~~~~~~~~~~ 170 (764)
||.-.+..+ +...+++|++||||.|...+.. |+||+|.+-..+ .........++
T Consensus 1004 V~~ltGd~~~~~~~~~~~~IiV~TPEkld~llr~~~~~~~l~~v~lvViDE~H~l~d~rg~~le~il~rl~~i~~~~~~~ 1083 (1724)
T 4f92_B 1004 VVLLTGETSTDLKLLGKGNIIISTPEKWDILSRRWKQRKNVQNINLFVVDEVHLIGGENGPVLEVICSRMRYISSQIERP 1083 (1724)
T ss_dssp EEECCSCHHHHHHHHHHCSEEEECHHHHHHHHTTTTTCHHHHSCSEEEECCGGGGGSTTHHHHHHHHHHHHHHHHTTSSC
T ss_pred EEEEECCCCcchhhcCCCCEEEECHHHHHHHHhCcccccccceeeEEEeechhhcCCCCCccHHHHHHHHHHHHhhcCCC
Confidence 886543211 1124578999999997544421 458877432110 00000123467
Q ss_pred ceEEEeeccc-chhhhccccCCCCC--CCeeeeC--CcccceeEEecC--CCchhhHHHHHHHHHHH-HhhcCCCCCeEE
Q 038192 171 LKLILMSATL-RVEDFISGGRLFRN--PPIIEVP--TRQFPVTVHFSK--RTEIVDYIGQAYKKVMS-IHKRLPQGGILV 242 (764)
Q Consensus 171 lKlILMSATl-~~~~f~~~~~~f~~--~~vi~i~--gr~~pV~~~y~~--~~~~~d~l~~~~~~v~~-i~~~~~~g~ilv 242 (764)
+|+|+||||+ |++.|+ ++++. ..+..+. .|..|.+.+... ............+.+.. +....+.+.++|
T Consensus 1084 ~riI~lSATl~N~~dla---~WL~~~~~~~~~~~~~~RPvpL~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~lV 1160 (1724)
T 4f92_B 1084 IRIVALSSSLSNAKDVA---HWLGCSATSTFNFHPNVRPVPLELHIQGFNISHTQTRLLSMAKPVYHAITKHSPKKPVIV 1160 (1724)
T ss_dssp CEEEEEESCBTTHHHHH---HHHTCCSTTEEECCGGGCSSCEEEEEEEECCCSHHHHHHTTHHHHHHHHHHHCSSSCEEE
T ss_pred ceEEEEeCCCCCHHHHH---HHhCCCCCCeEEeCCCCCCCCeEEEEEeccCCCchhhhhhhcchHHHHHHHhcCCCCeee
Confidence 9999999999 888888 46654 2333333 344454543321 11101111111122222 223345678999
Q ss_pred ecCCHHHHHHHHHHHHHHHHHhhhhccccccCCccccCCCCCccccchhHHhHHHHHhhcCcccccccccCCCCCccccc
Q 038192 243 FVTGQREVEYLCSKLRKASKQLLVNSSKENKGNQVVADSEPNATKDINMKEINEAFEIQGYSTEQQTDRFSSYDEDQFDI 322 (764)
Q Consensus 243 F~~g~~~ie~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~ 322 (764)
|++++..++..+..|....... . + .........+++..
T Consensus 1161 F~~sR~~~~~~A~~L~~~~~~~----~-----~-------~~~~~~~~~~~l~~-------------------------- 1198 (1724)
T 4f92_B 1161 FVPSRKQTRLTAIDILTTCAAD----I-----Q-------RQRFLHCTEKDLIP-------------------------- 1198 (1724)
T ss_dssp EESSHHHHHHHHHHHHHHHHHT----T-----C-------TTTTBCSCHHHHHH--------------------------
T ss_pred eCCCHHHHHHHHHHHHHHHhhc----c-----c-------hhhhhcccHHHHHH--------------------------
Confidence 9999999998887775432110 0 0 00000000000000
Q ss_pred CccccccccCccchhhhhhccchhhhhhhcCCCCCCCCcccccccchhhhhHHHHHHhhcCCCCCCCccccCCCCCCCCc
Q 038192 323 DDNELDALSDSETESETEILGEDEKLVEQKCPMDGDDPVDVLKENWSLGSLKLAFEVLSGKNASGPSSQMKLSTPAIPEQ 402 (764)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilvfl~g~~~i~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 402 (764)
. +....+ ..|... +
T Consensus 1199 -------------------------~---------------l~~~~d-~~L~~~---l---------------------- 1212 (1724)
T 4f92_B 1199 -------------------------Y---------------LEKLSD-STLKET---L---------------------- 1212 (1724)
T ss_dssp -------------------------H---------------HTTCCC-HHHHHH---H----------------------
T ss_pred -------------------------H---------------Hhhccc-HHHHHH---H----------------------
Confidence 0 000000 001100 0
Q ss_pred CCCCCCCCCCCCCCCCCCCccccccCcccCCCCCeEEEecCCCCCHHHHHhhhccCCCCceEEEEecCcccccCCCCCeE
Q 038192 403 CTELPPTPTPEQCPELSSPDVEKMGDNKRAGVGALCVLPLYAMLPAAAQLRVFEDVKEGERLVVVSTNVAETSLTIPGIK 482 (764)
Q Consensus 403 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~pLHs~l~~~eQ~~vf~~~~~g~rKVIlsTNIAEtSITIpdV~ 482 (764)
...|..+||+|++.+|..|++.|..|..+||+||+.++.||++|.+.
T Consensus 1213 ---------------------------------~~GIa~hHagL~~~~R~~VE~lF~~G~i~VLvaT~tlA~GVnlPa~~ 1259 (1724)
T 4f92_B 1213 ---------------------------------LNGVGYLHEGLSPMERRLVEQLFSSGAIQVVVASRSLCWGMNVAAHL 1259 (1724)
T ss_dssp ---------------------------------HTTEEEECTTSCHHHHHHHHHHHHHTSBCEEEEEGGGSSSCCCCBSE
T ss_pred ---------------------------------hCCEEEECCCCCHHHHHHHHHHHHCCCCeEEEEChHHHcCCCCCccE
Confidence 12377899999999999999999999999999999999999999999
Q ss_pred EEEeCCcccceeeccCCCccccceeeccHHhHHHhccccCCCC---CCEEEEccCHH---HhcccCCCCCCCcccccChh
Q 038192 483 YVVDTGREKVKKYNSANGIESYEIQWISKASAAQRAGRAGRTA---PGHCYRLYSSA---VFNNILPDFSCAEISKVPVD 556 (764)
Q Consensus 483 ~VID~G~~K~~~yd~~~~~~~l~~~~iSkasa~QR~GRAGR~~---~G~cyrLys~~---~~~~~l~~~~~PEI~r~~L~ 556 (764)
+||.+- ..||...+ ...+.|-+++.||+|||||.+ .|.|+-+++.. .|...+ ..|+.....|.
T Consensus 1260 VVI~~~----~~~dg~~~----~~~~~s~~~~~Qm~GRAGR~g~d~~G~avll~~~~~~~~~~~ll---~~~~pveS~L~ 1328 (1724)
T 4f92_B 1260 VIIMDT----QYYNGKIH----AYVDYPIYDVLQMVGHANRPLQDDEGRCVIMCQGSKKDFFKKFL---YEPLPVESHLD 1328 (1724)
T ss_dssp EEEECS----EEEETTTT----EEEECCHHHHHHHHTTBCCTTTCSCEEEEEEEEGGGHHHHHHHT---TSCBCCCCCGG
T ss_pred EEEecC----ccccCccc----ccCCCCHHHHHHhhccccCCCCCCceEEEEEecchHHHHHHHHh---CCCCceeeecc
Confidence 999642 35765433 235789999999999999987 59999998764 333333 23343444433
Q ss_pred ----hHHHHHHHcCC-CCCC--------CCC-----------CCCCCC--------HHHHHHHHHHHHHccccc--CCC-
Q 038192 557 ----GVVLLMKSMNI-DKVS--------NFP-----------FPTPPE--------VTALVEAERCLKALEALD--SNG- 601 (764)
Q Consensus 557 ----~~~L~lk~l~~-~~~~--------~f~-----------~~~pP~--------~~~i~~ai~~L~~lgAld--~~~- 601 (764)
+.++..-+.|. .+.. .|. -+...+ .+.+.++++.|...|++. +++
T Consensus 1329 ~~l~~~l~~eI~~~~i~~~~d~~~~l~~Tfl~~r~~~nP~~y~l~~~~~~~~~~~l~~lv~~~l~~L~~~~~I~~~~~~~ 1408 (1724)
T 4f92_B 1329 HCMHDHFNAEIVTKTIENKQDAVDYLTWTFLYRRMTQNPNYYNLQGISHRHLSDHLSELVEQTLSDLEQSKCISIEDEMD 1408 (1724)
T ss_dssp GSCHHHHHHHHHTTSCCBHHHHHHHHTTSSHHHHHHHSGGGTTCSCCSHHHHHHHHHHHHHHHHHHHHHTTSEEEETTTE
T ss_pred cchHHHHHHHHHhcccCCHHHHHHHHHhhHHHHHHhcCcccccccccchhhHHHHHHHHHHHHHHHHHHCCCEEEcCCCC
Confidence 33333333331 1100 010 011122 344678999999999984 344
Q ss_pred -CccHHHHHHhcCCCChHHHHHHHHHH
Q 038192 602 -RLTALGKAMAHYPMSPRHSRMLLTLI 627 (764)
Q Consensus 602 -~LT~LG~~la~LPvdp~lgkmLl~~~ 627 (764)
..|++|+.++.+.++|.-++++..++
T Consensus 1409 l~~T~lG~i~s~~yi~~~t~~~~~~~l 1435 (1724)
T 4f92_B 1409 VAPLNLGMIAAYYYINYTTIELFSMSL 1435 (1724)
T ss_dssp EEECHHHHHHHHTTCCHHHHHHHHHHC
T ss_pred EeecHHHHHHHHHCCCHHHHHHHHHhc
Confidence 46999999999999999999998764
No 34
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=99.94 E-value=8.9e-27 Score=271.62 Aligned_cols=292 Identities=16% Similarity=0.167 Sum_probs=197.2
Q ss_pred hhhHHHHHHHHHcCCeEEEEecCCCCccc--cHHHHHHHhccCCCCCCCCCceEEEecccHHHHHHHHHHHHHHhCCCCC
Q 038192 37 VMMEQEIMEAVNDNSAVIICGETGCGKTT--QVPQFLFEAGFGSNRCSSRSGRIGVTQPRRVAVLATAKRVAFELGLHLG 114 (764)
Q Consensus 37 ~~~~~~Il~~l~~~~vviI~GeTGSGKTT--qvPq~Lle~~~~~~~~~~~~~~Ii~tQPRRiaAisvA~RVa~E~g~~lG 114 (764)
...|.++++++.+++.+++.++||+|||. |+|..+ . .++++|..|++.++.+.++++.. +|.
T Consensus 46 rp~Q~~~i~~il~g~d~lv~~pTGsGKTl~~~lpal~--~----------~g~~lVisP~~~L~~q~~~~l~~-~gi--- 109 (591)
T 2v1x_A 46 RPLQLETINVTMAGKEVFLVMPTGGGKSLCYQLPALC--S----------DGFTLVICPLISLMEDQLMVLKQ-LGI--- 109 (591)
T ss_dssp CTTHHHHHHHHHTTCCEEEECCTTSCTTHHHHHHHHT--S----------SSEEEEECSCHHHHHHHHHHHHH-HTC---
T ss_pred CHHHHHHHHHHHcCCCEEEEECCCChHHHHHHHHHHH--c----------CCcEEEEeCHHHHHHHHHHHHHh-cCC---
Confidence 35688889998888889999999999998 566532 1 15899999999999999887765 343
Q ss_pred CEeeEEeccCcc------------cCCCceEEEEchHHHH------HHHHH----------HHHHHHHHHhhc--ccc--
Q 038192 115 KEVGFQVRHDKK------------IGDSCSIKFMTDGILL------RELKA----------LYEKQQQLLRSG--QCI-- 162 (764)
Q Consensus 115 ~~VGY~ir~e~~------------~s~~t~I~f~T~GiLL------r~l~~----------i~de~~~~l~~~--~~~-- 162 (764)
.+++-....+. .....+|+|+||+.|. +.+.. |+||+|.+...| |..
T Consensus 110 -~~~~l~~~~~~~~~~~~~~~l~~~~~~~~Ilv~Tpe~L~~~~~~~~~l~~~~~~~~i~~iViDEAH~is~~g~dfr~~~ 188 (591)
T 2v1x_A 110 -SATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTPEKIAKSKMFMSRLEKAYEARRFTRIAVDEVHCCSQWGHDFRPDY 188 (591)
T ss_dssp -CEEECCSSCCHHHHHHHHHHHHCTTCCCCEEEECHHHHHSCHHHHHHHHHHHHTTCEEEEEEETGGGGSTTCTTCCGGG
T ss_pred -cEEEEeCCCCHHHHHHHHHHhhcccCCCCEEEEChhHhhccHHHHHHHHhhhhccCCcEEEEECcccccccccccHHHH
Confidence 33332221111 2457899999999874 23322 458888766544 211
Q ss_pred ----CCccCCCCceEEEeecccchhhhccccCCCCCCCeeeeCCcccceeEEecCCCchhhHHHHHHHHHHHHhh-cCCC
Q 038192 163 ----EPKDRVFPLKLILMSATLRVEDFISGGRLFRNPPIIEVPTRQFPVTVHFSKRTEIVDYIGQAYKKVMSIHK-RLPQ 237 (764)
Q Consensus 163 ----~~~~~~~~lKlILMSATl~~~~f~~~~~~f~~~~vi~i~gr~~pV~~~y~~~~~~~d~l~~~~~~v~~i~~-~~~~ 237 (764)
.+....++.++|+||||++........++++....+.+........++|.-... .+........+.++.. ..+.
T Consensus 189 ~~l~~l~~~~~~~~ii~lSAT~~~~v~~~i~~~l~~~~~~~~~~~~~r~nl~~~v~~~-~~~~~~~~~~l~~~l~~~~~~ 267 (591)
T 2v1x_A 189 KALGILKRQFPNASLIGLTATATNHVLTDAQKILCIEKCFTFTASFNRPNLYYEVRQK-PSNTEDFIEDIVKLINGRYKG 267 (591)
T ss_dssp GGGGHHHHHCTTSEEEEEESSCCHHHHHHHHHHTTCCSCEEEECCCCCTTEEEEEEEC-CSSHHHHHHHHHHHHTTTTTT
T ss_pred HHHHHHHHhCCCCcEEEEecCCCHHHHHHHHHHhCCCCcEEEecCCCCcccEEEEEeC-CCcHHHHHHHHHHHHHHhccC
Confidence 112335788999999999664221111344442222222211111122211000 1111122223333332 2255
Q ss_pred CCeEEecCCHHHHHHHHHHHHHHHHHhhhhccccccCCccccCCCCCccccchhHHhHHHHHhhcCcccccccccCCCCC
Q 038192 238 GGILVFVTGQREVEYLCSKLRKASKQLLVNSSKENKGNQVVADSEPNATKDINMKEINEAFEIQGYSTEQQTDRFSSYDE 317 (764)
Q Consensus 238 g~ilvF~~g~~~ie~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~ 317 (764)
+..|||+++..+++.++..|++
T Consensus 268 ~~~IVf~~sr~~~e~la~~L~~---------------------------------------------------------- 289 (591)
T 2v1x_A 268 QSGIIYCFSQKDSEQVTVSLQN---------------------------------------------------------- 289 (591)
T ss_dssp CEEEEECSSHHHHHHHHHHHHH----------------------------------------------------------
T ss_pred CCeEEEeCcHHHHHHHHHHHHH----------------------------------------------------------
Confidence 6789999999988888776643
Q ss_pred cccccCccccccccCccchhhhhhccchhhhhhhcCCCCCCCCcccccccchhhhhHHHHHHhhcCCCCCCCccccCCCC
Q 038192 318 DQFDIDDNELDALSDSETESETEILGEDEKLVEQKCPMDGDDPVDVLKENWSLGSLKLAFEVLSGKNASGPSSQMKLSTP 397 (764)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilvfl~g~~~i~~l~~~~~~l~~~~~~~~~~~~~~~~~ 397 (764)
T Consensus 290 -------------------------------------------------------------------------------- 289 (591)
T 2v1x_A 290 -------------------------------------------------------------------------------- 289 (591)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCcCCCCCCCCCCCCCCCCCCCccccccCcccCCCCCeEEEecCCCCCHHHHHhhhccCCCCceEEEEecCcccccCC
Q 038192 398 AIPEQCTELPPTPTPEQCPELSSPDVEKMGDNKRAGVGALCVLPLYAMLPAAAQLRVFEDVKEGERLVVVSTNVAETSLT 477 (764)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~pLHs~l~~~eQ~~vf~~~~~g~rKVIlsTNIAEtSIT 477 (764)
.++.+.++||+|++++|.++++.|..|..+|||||+++++||+
T Consensus 290 -------------------------------------~g~~~~~~h~~l~~~~R~~~~~~F~~g~~~VlVAT~a~~~GID 332 (591)
T 2v1x_A 290 -------------------------------------LGIHAGAYHANLEPEDKTTVHRKWSANEIQVVVATVAFGMGID 332 (591)
T ss_dssp -------------------------------------TTCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEECTTSCTTCC
T ss_pred -------------------------------------CCCCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEechhhcCCC
Confidence 1245788999999999999999999999999999999999999
Q ss_pred CCCeEEEEeCCcccceeeccCCCccccceeeccHHhHHHhccccCCCC-CCEEEEccCHHHhc
Q 038192 478 IPGIKYVVDTGREKVKKYNSANGIESYEIQWISKASAAQRAGRAGRTA-PGHCYRLYSSAVFN 539 (764)
Q Consensus 478 IpdV~~VID~G~~K~~~yd~~~~~~~l~~~~iSkasa~QR~GRAGR~~-~G~cyrLys~~~~~ 539 (764)
+|||++||+.+.++ |.+++.||+|||||.+ +|.|+.+|+..+..
T Consensus 333 ~p~V~~VI~~~~p~------------------s~~~y~Qr~GRaGR~G~~g~~i~l~~~~D~~ 377 (591)
T 2v1x_A 333 KPDVRFVIHHSMSK------------------SMENYYQESGRAGRDDMKADCILYYGFGDIF 377 (591)
T ss_dssp CSCEEEEEESSCCS------------------SHHHHHHHHTTSCTTSSCEEEEEEECHHHHH
T ss_pred cccccEEEEeCCCC------------------CHHHHHHHhccCCcCCCCceEEEEEChHHHH
Confidence 99999999855433 6788889999999997 59999999987664
No 35
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=99.92 E-value=1.7e-25 Score=257.75 Aligned_cols=287 Identities=18% Similarity=0.236 Sum_probs=198.4
Q ss_pred hhhHHHHHHHHHcCCeEEEEecCCCCccc--cHHHHHHHhccCCCCCCCCCceEEEecccHHHHHHHHHHHHHHhCCCCC
Q 038192 37 VMMEQEIMEAVNDNSAVIICGETGCGKTT--QVPQFLFEAGFGSNRCSSRSGRIGVTQPRRVAVLATAKRVAFELGLHLG 114 (764)
Q Consensus 37 ~~~~~~Il~~l~~~~vviI~GeTGSGKTT--qvPq~Lle~~~~~~~~~~~~~~Ii~tQPRRiaAisvA~RVa~E~g~~lG 114 (764)
..+|.++++++.+++.+++.++||||||. |+|..+. .+.+++..|++.++.+..+++.. + |
T Consensus 27 r~~Q~~~i~~il~g~d~lv~apTGsGKTl~~~lp~l~~------------~g~~lvi~P~~aL~~q~~~~l~~-~----g 89 (523)
T 1oyw_A 27 RPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLL------------NGLTVVVSPLISLMKDQVDQLQA-N----G 89 (523)
T ss_dssp CTTHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHS------------SSEEEEECSCHHHHHHHHHHHHH-T----T
T ss_pred CHHHHHHHHHHHcCCCEEEECCCCcHHHHHHHHHHHHh------------CCCEEEECChHHHHHHHHHHHHH-c----C
Confidence 56788899998888889999999999998 6776532 14688889999999988887753 3 4
Q ss_pred CEeeEEeccCc----------ccCCCceEEEEchHHHHHH-----HH------HHHHHHHHHHhhc--c------ccCCc
Q 038192 115 KEVGFQVRHDK----------KIGDSCSIKFMTDGILLRE-----LK------ALYEKQQQLLRSG--Q------CIEPK 165 (764)
Q Consensus 115 ~~VGY~ir~e~----------~~s~~t~I~f~T~GiLLr~-----l~------~i~de~~~~l~~~--~------~~~~~ 165 (764)
..+++-....+ ......+|+|+||+.|+.. +. -|+||+|.+...| + +..+.
T Consensus 90 i~~~~l~~~~~~~~~~~~~~~~~~~~~~ilv~Tpe~l~~~~~~~~l~~~~~~~vViDEaH~i~~~g~~fr~~~~~l~~l~ 169 (523)
T 1oyw_A 90 VAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAPERLMLDNFLEHLAHWNPVLLAVDEAHCISQWGHDFRPEYAALGQLR 169 (523)
T ss_dssp CCEEEECTTSCHHHHHHHHHHHHHTCCSEEEECHHHHTSTTHHHHHTTSCEEEEEESSGGGGCTTSSCCCHHHHGGGGHH
T ss_pred CcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhChHHHHHHhhCCCCEEEEeCccccCcCCCccHHHHHHHHHHH
Confidence 44444322211 1124578999999999632 21 1568998765443 1 11122
Q ss_pred cCCCCceEEEeecccchhhhccccCCCC-CCCeeeeCCcccceeEEecCCCchhhHHHHHHHHHHHHhhcCCCCCeEEec
Q 038192 166 DRVFPLKLILMSATLRVEDFISGGRLFR-NPPIIEVPTRQFPVTVHFSKRTEIVDYIGQAYKKVMSIHKRLPQGGILVFV 244 (764)
Q Consensus 166 ~~~~~lKlILMSATl~~~~f~~~~~~f~-~~~vi~i~gr~~pV~~~y~~~~~~~d~l~~~~~~v~~i~~~~~~g~ilvF~ 244 (764)
...|+.++|+||||+.........+.++ ..+.+.+.+..-|. ++|.-... .+.+.. +.+.....+.+..|||+
T Consensus 170 ~~~~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~r~~-l~~~v~~~-~~~~~~----l~~~l~~~~~~~~IVf~ 243 (523)
T 1oyw_A 170 QRFPTLPFMALTATADDTTRQDIVRLLGLNDPLIQISSFDRPN-IRYMLMEK-FKPLDQ----LMRYVQEQRGKSGIIYC 243 (523)
T ss_dssp HHCTTSCEEEEESCCCHHHHHHHHHHHTCCSCEEEECCCCCTT-EEEEEEEC-SSHHHH----HHHHHHHTTTCCEEEEC
T ss_pred HhCCCCCEEEEeCCCCHHHHHHHHHHhCCCCCeEEeCCCCCCc-eEEEEEeC-CCHHHH----HHHHHHhcCCCcEEEEe
Confidence 3457889999999996542211002333 34555555543332 11211000 122222 22222233556889999
Q ss_pred CCHHHHHHHHHHHHHHHHHhhhhccccccCCccccCCCCCccccchhHHhHHHHHhhcCcccccccccCCCCCcccccCc
Q 038192 245 TGQREVEYLCSKLRKASKQLLVNSSKENKGNQVVADSEPNATKDINMKEINEAFEIQGYSTEQQTDRFSSYDEDQFDIDD 324 (764)
Q Consensus 245 ~g~~~ie~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~ 324 (764)
++.+.++.+++.|++
T Consensus 244 ~sr~~~e~l~~~L~~----------------------------------------------------------------- 258 (523)
T 1oyw_A 244 NSRAKVEDTAARLQS----------------------------------------------------------------- 258 (523)
T ss_dssp SSHHHHHHHHHHHHH-----------------------------------------------------------------
T ss_pred CCHHHHHHHHHHHHH-----------------------------------------------------------------
Confidence 999998888776643
Q ss_pred cccccccCccchhhhhhccchhhhhhhcCCCCCCCCcccccccchhhhhHHHHHHhhcCCCCCCCccccCCCCCCCCcCC
Q 038192 325 NELDALSDSETESETEILGEDEKLVEQKCPMDGDDPVDVLKENWSLGSLKLAFEVLSGKNASGPSSQMKLSTPAIPEQCT 404 (764)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilvfl~g~~~i~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 404 (764)
T Consensus 259 -------------------------------------------------------------------------------- 258 (523)
T 1oyw_A 259 -------------------------------------------------------------------------------- 258 (523)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCCCCCCCCCCccccccCcccCCCCCeEEEecCCCCCHHHHHhhhccCCCCceEEEEecCcccccCCCCCeEEE
Q 038192 405 ELPPTPTPEQCPELSSPDVEKMGDNKRAGVGALCVLPLYAMLPAAAQLRVFEDVKEGERLVVVSTNVAETSLTIPGIKYV 484 (764)
Q Consensus 405 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~pLHs~l~~~eQ~~vf~~~~~g~rKVIlsTNIAEtSITIpdV~~V 484 (764)
.++.+.++||+|+.++|.++++.|..|..+|||||+++++||++|||++|
T Consensus 259 ------------------------------~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vlVaT~a~~~GiD~p~v~~V 308 (523)
T 1oyw_A 259 ------------------------------KGISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAFGMGINKPNVRFV 308 (523)
T ss_dssp ------------------------------TTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECTTSCTTTCCTTCCEE
T ss_pred ------------------------------CCCCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEechhhCCCCccCccEE
Confidence 02347889999999999999999999999999999999999999999999
Q ss_pred EeCCcccceeeccCCCccccceeeccHHhHHHhccccCCCC-CCEEEEccCHHHhc
Q 038192 485 VDTGREKVKKYNSANGIESYEIQWISKASAAQRAGRAGRTA-PGHCYRLYSSAVFN 539 (764)
Q Consensus 485 ID~G~~K~~~yd~~~~~~~l~~~~iSkasa~QR~GRAGR~~-~G~cyrLys~~~~~ 539 (764)
|+.+. |-|.+++.||+|||||.+ +|.|+.+|+..+..
T Consensus 309 I~~~~------------------p~s~~~y~Qr~GRaGR~g~~~~~~l~~~~~d~~ 346 (523)
T 1oyw_A 309 VHFDI------------------PRNIESYYQETGRAGRDGLPAEAMLFYDPADMA 346 (523)
T ss_dssp EESSC------------------CSSHHHHHHHHTTSCTTSSCEEEEEEECHHHHH
T ss_pred EEECC------------------CCCHHHHHHHhccccCCCCCceEEEEeCHHHHH
Confidence 98443 347788999999999998 69999999987653
No 36
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=99.92 E-value=2e-25 Score=249.02 Aligned_cols=210 Identities=16% Similarity=0.101 Sum_probs=125.9
Q ss_pred HhhhcCCCchhhHHHHHHHHHcCCeEEEEecCCCCccccHHHHHHHhccCCCCCCCCCceEEEecccHHHHHHHHHHHHH
Q 038192 28 ENNRKDLPIVMMEQEIMEAVNDNSAVIICGETGCGKTTQVPQFLFEAGFGSNRCSSRSGRIGVTQPRRVAVLATAKRVAF 107 (764)
Q Consensus 28 ~~~R~~LPi~~~~~~Il~~l~~~~vviI~GeTGSGKTTqvPq~Lle~~~~~~~~~~~~~~Ii~tQPRRiaAisvA~RVa~ 107 (764)
.+.......+.+|.+.++.+.+++.++++++||||||+..-..++... .. ..++++..|+|.+|.++++++..
T Consensus 14 l~~~~~~~~~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~l~~~~~~~-~~------~~~~lil~Pt~~L~~q~~~~~~~ 86 (414)
T 3oiy_A 14 FKKKFGKDLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLA-RK------GKKSALVFPTVTLVKQTLERLQK 86 (414)
T ss_dssp HHHHHSSCCCHHHHHHHHHHTTTCCEECCSCSSSSHHHHHHHHHHHHH-TT------TCCEEEEESSHHHHHHHHHHHHH
T ss_pred HHHhcCCCCCHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHh-cC------CCEEEEEECCHHHHHHHHHHHHH
Confidence 333334555788889999998888899999999999984333333332 11 25899999999999999998876
Q ss_pred HhCCCCCCEeeEEeccCcc---------c-CCCceEEEEchHHHHHHHHH---------HHHHHHH----------HHh-
Q 038192 108 ELGLHLGKEVGFQVRHDKK---------I-GDSCSIKFMTDGILLRELKA---------LYEKQQQ----------LLR- 157 (764)
Q Consensus 108 E~g~~lG~~VGY~ir~e~~---------~-s~~t~I~f~T~GiLLr~l~~---------i~de~~~----------~l~- 157 (764)
++. .|-.|+.-....+. . ...++|+|+|+|.|++.+.. |+||+|. ++.
T Consensus 87 -~~~-~~~~v~~~~g~~~~~~~~~~~~~l~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~iViDEaH~~~~~~~~~d~~l~~ 164 (414)
T 3oiy_A 87 -LAD-EKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREKLSQKRFDFVFVDDVDAVLKASRNIDTLLMM 164 (414)
T ss_dssp -HCC-SSCCEEECCTTSCHHHHHHHHHHHHHTCCSEEEEEHHHHHHCHHHHTTCCCSEEEESCHHHHHHCHHHHHHHHHH
T ss_pred -Hcc-CCceEEEEECCCChhhHHHHHHHhhcCCCCEEEECHHHHHHHHHHhccccccEEEEeChHhhhhccchhhhHHhh
Confidence 544 66667665544332 1 12489999999999877643 5588853 333
Q ss_pred hccccC-C---------------ccCCCCceEEEeecccchhh----hccccCCCCCCCeeeeCCcccceeEEecCCCch
Q 038192 158 SGQCIE-P---------------KDRVFPLKLILMSATLRVED----FISGGRLFRNPPIIEVPTRQFPVTVHFSKRTEI 217 (764)
Q Consensus 158 ~~~~~~-~---------------~~~~~~lKlILMSATl~~~~----f~~~~~~f~~~~vi~i~gr~~pV~~~y~~~~~~ 217 (764)
.++... + ....++.++|+||||+.... +.. .+++ ..+.......-.+...|.....
T Consensus 165 ~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~~SAT~~~~~~~~~~~~--~~~~-~~~~~~~~~~~~i~~~~~~~~~- 240 (414)
T 3oiy_A 165 VGIPEEIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFR--DLLN-FTVGRLVSVARNITHVRISSRS- 240 (414)
T ss_dssp TTCCHHHHHHHHHHHHHTCCCCCCTTCCCCEEEESSCCSSCCSSTTHHHH--HHHS-CCSSCCCCCCCSEEEEEESSCC-
T ss_pred cCCcHHHHHHHHHhcccchhhhhcccCCCceEEEEecCCCcchhHHHHHH--Hhhc-cCcCccccccccchheeeccCH-
Confidence 443221 0 01126789999999953322 211 1111 1111111111223333432211
Q ss_pred hhHHHHHHHHHHHHhhcCCCCCeEEecCCHHHHHHHHHHHH
Q 038192 218 VDYIGQAYKKVMSIHKRLPQGGILVFVTGQREVEYLCSKLR 258 (764)
Q Consensus 218 ~d~l~~~~~~v~~i~~~~~~g~ilvF~~g~~~ie~l~~~L~ 258 (764)
.+.+...+ .. .++.+|||+++...++.++..|+
T Consensus 241 ~~~l~~~l-------~~-~~~~~lVF~~~~~~~~~l~~~L~ 273 (414)
T 3oiy_A 241 KEKLVELL-------EI-FRDGILIFAQTEEEGKELYEYLK 273 (414)
T ss_dssp HHHHHHHH-------HH-HCSSEEEEESSHHHHHHHHHHHH
T ss_pred HHHHHHHH-------HH-cCCCEEEEECCHHHHHHHHHHHH
Confidence 22222211 11 23789999999998888776664
No 37
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=99.92 E-value=1.9e-25 Score=257.04 Aligned_cols=144 Identities=15% Similarity=0.126 Sum_probs=97.6
Q ss_pred CchhhHHHHHHHHHcCCeEEEEecCCCCccccHHHHHHHhccCCCCCCCCCceEEEecccHHHHHHHHHHHHHHhCCCCC
Q 038192 35 PIVMMEQEIMEAVNDNSAVIICGETGCGKTTQVPQFLFEAGFGSNRCSSRSGRIGVTQPRRVAVLATAKRVAFELGLHLG 114 (764)
Q Consensus 35 Pi~~~~~~Il~~l~~~~vviI~GeTGSGKTTqvPq~Lle~~~~~~~~~~~~~~Ii~tQPRRiaAisvA~RVa~E~g~~lG 114 (764)
..+.+|.+.++++.+++.++++++||||||.+...++++....... ....++++..|+|.+|.++++.+..... ..|
T Consensus 4 ~~~~~Q~~~i~~~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~--~~~~~~lil~P~~~L~~q~~~~~~~~~~-~~~ 80 (555)
T 3tbk_A 4 KPRNYQLELALPAKKGKNTIICAPTGCGKTFVSLLICEHHLKKFPC--GQKGKVVFFANQIPVYEQQATVFSRYFE-RLG 80 (555)
T ss_dssp CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCS--SCCCCEEEECSSHHHHHHHHHHHHHHHH-TTT
T ss_pred CCcHHHHHHHHHHhCCCCEEEEeCCCChHHHHHHHHHHHHHHhccc--CCCCEEEEEeCCHHHHHHHHHHHHHHhc-cCC
Confidence 4456788888898888889999999999999877777765433211 1136899999999999999887665432 224
Q ss_pred CEeeEEeccCcccC------CCceEEEEchHHHHHHHHH------------HHHHHHHHHhhc--------cccC--Ccc
Q 038192 115 KEVGFQVRHDKKIG------DSCSIKFMTDGILLRELKA------------LYEKQQQLLRSG--------QCIE--PKD 166 (764)
Q Consensus 115 ~~VGY~ir~e~~~s------~~t~I~f~T~GiLLr~l~~------------i~de~~~~l~~~--------~~~~--~~~ 166 (764)
..|+.-.+..+... ..++|+|+|+|+|++.+.. |+||+|.+...+ ++.. ...
T Consensus 81 ~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah~~~~~~~~~~~~~~~~~~~~~~~ 160 (555)
T 3tbk_A 81 YNIASISGATSDSVSVQHIIEDNDIIILTPQILVNNLNNGAIPSLSVFTLMIFDECHNTSKNHPYNQIMFRYLDHKLGES 160 (555)
T ss_dssp CCEEEECTTTGGGSCHHHHHHHCSEEEECHHHHHHHHHTSSSCCGGGCSEEEETTGGGCSTTCHHHHHHHHHHHHHTSSC
T ss_pred cEEEEEcCCCcchhhHHHHhcCCCEEEECHHHHHHHHhcCcccccccCCEEEEECccccCCcchHHHHHHHHHHhhhccc
Confidence 45554333332211 2478999999999998843 568888653322 1110 011
Q ss_pred CCCCceEEEeecccc
Q 038192 167 RVFPLKLILMSATLR 181 (764)
Q Consensus 167 ~~~~lKlILMSATl~ 181 (764)
..++.++++||||+.
T Consensus 161 ~~~~~~~l~lSAT~~ 175 (555)
T 3tbk_A 161 RDPLPQVVGLTASVG 175 (555)
T ss_dssp CSCCCEEEEEESCCC
T ss_pred cCCCCeEEEEecCcc
Confidence 236789999999993
No 38
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=99.92 E-value=1.1e-25 Score=232.57 Aligned_cols=170 Identities=41% Similarity=0.624 Sum_probs=143.9
Q ss_pred HHHhhhcCCCchhhHHHHHHHHHcCCeEEEEecCCCCccccHHHHHHHhccCCCCCCCCCceEEEecccHHHHHHHHHHH
Q 038192 26 EVENNRKDLPIVMMEQEIMEAVNDNSAVIICGETGCGKTTQVPQFLFEAGFGSNRCSSRSGRIGVTQPRRVAVLATAKRV 105 (764)
Q Consensus 26 ~~~~~R~~LPi~~~~~~Il~~l~~~~vviI~GeTGSGKTTqvPq~Lle~~~~~~~~~~~~~~Ii~tQPRRiaAisvA~RV 105 (764)
++.+.|..||++.++++++.++.++++++|+|+|||||||++++++++.....+. ...++++|++|+|++|.++++++
T Consensus 52 ~~~~~~~~~p~~~~q~~~i~~i~~g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~--~~~~~~l~~~p~~~la~q~~~~~ 129 (235)
T 3llm_A 52 AILQERELLPVKKFESEILEAISQNSVVIIRGATGCGKTTQVPQFILDDFIQNDR--AAECNIVVTQPRRISAVSVAERV 129 (235)
T ss_dssp HHHHHHHTSGGGGGHHHHHHHHHHCSEEEEECCTTSSHHHHHHHHHHHHHHHTTC--GGGCEEEEEESSHHHHHHHHHHH
T ss_pred HHHHHHhcCChHHHHHHHHHHHhcCCEEEEEeCCCCCcHHhHHHHHhcchhhcCC--CCceEEEEeccchHHHHHHHHHH
Confidence 3556788999999999999999999999999999999999999999986543221 12368999999999999999999
Q ss_pred HHHhCCCCCCEeeEEeccCcccC-CCceEEEEchHHHHHHHHH--------HHHHHHHH-Hhhccc----cCCccCCCCc
Q 038192 106 AFELGLHLGKEVGFQVRHDKKIG-DSCSIKFMTDGILLRELKA--------LYEKQQQL-LRSGQC----IEPKDRVFPL 171 (764)
Q Consensus 106 a~E~g~~lG~~VGY~ir~e~~~s-~~t~I~f~T~GiLLr~l~~--------i~de~~~~-l~~~~~----~~~~~~~~~l 171 (764)
+.+++..+|..+||.++++++.. .+++|+|||+|+|++.+.. |+||+|++ +..++. ..+....+++
T Consensus 130 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~Ivv~Tpg~l~~~l~~~l~~~~~lVlDEah~~~~~~~~~~~~l~~i~~~~~~~ 209 (235)
T 3llm_A 130 AFERGEEPGKSCGYSVRFESILPRPHASIMFCTVGVLLRKLEAGIRGISHVIVDEIHERDINTDFLLVVLRDVVQAYPEV 209 (235)
T ss_dssp HHTTTCCTTSSEEEEETTEEECCCSSSEEEEEEHHHHHHHHHHCCTTCCEEEECCTTSCCHHHHHHHHHHHHHHHHCTTS
T ss_pred HHHhccccCceEEEeechhhccCCCCCeEEEECHHHHHHHHHhhhcCCcEEEEECCccCCcchHHHHHHHHHHHhhCCCC
Confidence 99999999999999999998875 7899999999999999864 56888874 555543 2223345789
Q ss_pred eEEEeecccchhhhccccCCCCCCCeeee
Q 038192 172 KLILMSATLRVEDFISGGRLFRNPPIIEV 200 (764)
Q Consensus 172 KlILMSATl~~~~f~~~~~~f~~~~vi~i 200 (764)
++|+||||++.+.|. +||+++|+++|
T Consensus 210 ~~il~SAT~~~~~~~---~~~~~~pvi~v 235 (235)
T 3llm_A 210 RIVLMSATIDTSMFC---EYFFNCPIIEV 235 (235)
T ss_dssp EEEEEECSSCCHHHH---HHTTSCCCEEC
T ss_pred eEEEEecCCCHHHHH---HHcCCCCEEeC
Confidence 999999999999988 69999999875
No 39
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=99.91 E-value=5.4e-25 Score=272.02 Aligned_cols=198 Identities=16% Similarity=0.173 Sum_probs=124.5
Q ss_pred hhHHHHHHHHHcCCeEEEEecCCCCccccHHHHHHHhccCCCCCCCCCceEEEecccHHHHHHHHHHHHHHhCCCCCC--
Q 038192 38 MMEQEIMEAVNDNSAVIICGETGCGKTTQVPQFLFEAGFGSNRCSSRSGRIGVTQPRRVAVLATAKRVAFELGLHLGK-- 115 (764)
Q Consensus 38 ~~~~~Il~~l~~~~vviI~GeTGSGKTTqvPq~Lle~~~~~~~~~~~~~~Ii~tQPRRiaAisvA~RVa~E~g~~lG~-- 115 (764)
..|.+.+..+.+++.++++|+||||||+ +..+++...... ..+++|..|+|.+|.++++++... +...|.
T Consensus 59 ~iQ~~ai~~il~g~dvlv~apTGSGKTl-~~lp~l~~~~~~------~~~~lil~PtreLa~Q~~~~l~~l-~~~~~i~~ 130 (1054)
T 1gku_B 59 AIQKMWAKRILRKESFAATAPTGVGKTS-FGLAMSLFLALK------GKRCYVIFPTSLLVIQAAETIRKY-AEKAGVGT 130 (1054)
T ss_dssp HHHHHHHHHHHTTCCEECCCCBTSCSHH-HHHHHHHHHHTT------SCCEEEEESCHHHHHHHHHHHHHH-HTTTCCSG
T ss_pred HHHHHHHHHHHhCCCEEEEcCCCCCHHH-HHHHHHHHHhhc------CCeEEEEeccHHHHHHHHHHHHHH-HhhcCCCc
Confidence 8888888888888889999999999997 666666654432 258999999999999999977644 333444
Q ss_pred --EeeEEeccCcc---------cCCCceEEEEchHHHHHHHHH-------HHHHHHHHHh-----------hccccCCcc
Q 038192 116 --EVGFQVRHDKK---------IGDSCSIKFMTDGILLRELKA-------LYEKQQQLLR-----------SGQCIEPKD 166 (764)
Q Consensus 116 --~VGY~ir~e~~---------~s~~t~I~f~T~GiLLr~l~~-------i~de~~~~l~-----------~~~~~~~~~ 166 (764)
.|+.-++..+. ... ++|+|+|||+|++.+.. |+||+|.++. .|+......
T Consensus 131 ~~~v~~~~Gg~~~~~~~~~~~~l~~-~~IlV~TP~~L~~~l~~L~~l~~lViDEah~~l~~~~~~~~i~~~lgf~~~~~~ 209 (1054)
T 1gku_B 131 ENLIGYYHGRIPKREKENFMQNLRN-FKIVITTTQFLSKHYRELGHFDFIFVDDVDAILKASKNVDKLLHLLGFHYDLKT 209 (1054)
T ss_dssp GGSEEECCSSCCSHHHHHHHHSGGG-CSEEEEEHHHHHHCSTTSCCCSEEEESCHHHHHTSTHHHHHHHHHTTEEEETTT
T ss_pred cceEEEEeCCCChhhHHHHHhhccC-CCEEEEcHHHHHHHHHHhccCCEEEEeChhhhhhccccHHHHHHHhCcchhhhh
Confidence 45544433221 223 89999999999998753 5699998776 444322211
Q ss_pred --CCCCceEEEeecccchh-hhccccCCCCCCCeeeeCCcccc---eeEEecCCCchhhHHHHHHHHHHHHhhcCCCCCe
Q 038192 167 --RVFPLKLILMSATLRVE-DFISGGRLFRNPPIIEVPTRQFP---VTVHFSKRTEIVDYIGQAYKKVMSIHKRLPQGGI 240 (764)
Q Consensus 167 --~~~~lKlILMSATl~~~-~f~~~~~~f~~~~vi~i~gr~~p---V~~~y~~~~~~~d~l~~~~~~v~~i~~~~~~g~i 240 (764)
..+..++++||||+... .+.. .++++...+.+....++ +..+|..... .+.+.. +.... .+++
T Consensus 210 ~~~~~~~q~~l~SAT~t~~~~~~~--~~~~~~~~i~v~~~~~~~~~i~~~~~~~~k-~~~L~~-------ll~~~-~~~~ 278 (1054)
T 1gku_B 210 KSWVGEARGCLMVSTATAKKGKKA--ELFRQLLNFDIGSSRITVRNVEDVAVNDES-ISTLSS-------ILEKL-GTGG 278 (1054)
T ss_dssp TEEEECCSSEEEECCCCSCCCTTH--HHHHHHHCCCCSCCEECCCCEEEEEESCCC-TTTTHH-------HHTTS-CSCE
T ss_pred hhcccCCceEEEEecCCCchhHHH--HHhhcceEEEccCcccCcCCceEEEechhH-HHHHHH-------HHhhc-CCCE
Confidence 12456789999999543 2221 23333223334333332 4444443211 222222 22222 4678
Q ss_pred EEecCCHHHHHHHHH
Q 038192 241 LVFVTGQREVEYLCS 255 (764)
Q Consensus 241 lvF~~g~~~ie~l~~ 255 (764)
|||+++.+.++.++.
T Consensus 279 LVF~~t~~~a~~l~~ 293 (1054)
T 1gku_B 279 IIYARTGEEAEEIYE 293 (1054)
T ss_dssp EEEESSHHHHHHHHH
T ss_pred EEEEcCHHHHHHHHH
Confidence 999999887766543
No 40
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=99.91 E-value=8.6e-24 Score=270.41 Aligned_cols=437 Identities=17% Similarity=0.181 Sum_probs=257.2
Q ss_pred hHHHHHH-HHHcCCeEEEEecCCCCccccHHHHHHHhcc----CCCCCCCCCceEEEecccHHHHHHHHHHHHHHhCCCC
Q 038192 39 MEQEIME-AVNDNSAVIICGETGCGKTTQVPQFLFEAGF----GSNRCSSRSGRIGVTQPRRVAVLATAKRVAFELGLHL 113 (764)
Q Consensus 39 ~~~~Il~-~l~~~~vviI~GeTGSGKTTqvPq~Lle~~~----~~~~~~~~~~~Ii~tQPRRiaAisvA~RVa~E~g~~l 113 (764)
.|.++++ ++..++.++|+++||||||...-..++.... ..........+++.+.|.|..|.++.+.+.+..+ .+
T Consensus 83 iQs~~~~~al~~~~N~lv~APTGsGKTlva~l~il~~l~~~~~~~~~~~~~~~k~lyiaP~kALa~e~~~~l~~~~~-~~ 161 (1724)
T 4f92_B 83 IQSKLYRAALETDENLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDDFKIIYIAPMRSLVQEMVGSFGKRLA-TY 161 (1724)
T ss_dssp HHHHTHHHHHTCCCCEEEECCTTSCCHHHHHHHHHHHHGGGCCTTSSCCTTSCEEEEECSSHHHHHHHHHHHHHHHT-TT
T ss_pred HHHHHHHHHHcCCCcEEEEeCCcchHHHHHHHHHHHHHHhhccccccccCCCCEEEEECCHHHHHHHHHHHHHHHHh-hC
Confidence 3445554 5677888999999999999864444444321 1111112346899999999999999887776554 45
Q ss_pred CCEeeEEeccCcccC----CCceEEEEchHHHHHHHH-----H--------HHHHHHHHHhhc-----------cccCCc
Q 038192 114 GKEVGFQVRHDKKIG----DSCSIKFMTDGILLRELK-----A--------LYEKQQQLLRSG-----------QCIEPK 165 (764)
Q Consensus 114 G~~VGY~ir~e~~~s----~~t~I~f~T~GiLLr~l~-----~--------i~de~~~~l~~~-----------~~~~~~ 165 (764)
|-.||--.+ +...+ ..++|++|||+.+--.+. . |+||+|. +..+ ......
T Consensus 162 gi~V~~~tG-d~~~~~~~~~~~~IlVtTpEkld~llr~~~~~~~l~~v~~vIiDEvH~-l~d~RG~~lE~~l~rl~~~~~ 239 (1724)
T 4f92_B 162 GITVAELTG-DHQLCKEEISATQIIVCTPEKWDIITRKGGERTYTQLVRLIILDEIHL-LHDDRGPVLEALVARAIRNIE 239 (1724)
T ss_dssp TCCEEECCS-SCSSCCTTGGGCSEEEECHHHHHHHTTSSTTHHHHTTEEEEEETTGGG-GGSTTHHHHHHHHHHHHHHHH
T ss_pred CCEEEEEEC-CCCCCccccCCCCEEEECHHHHHHHHcCCccchhhcCcCEEEEecchh-cCCccHHHHHHHHHHHHHHHH
Confidence 666653222 22222 358899999998632221 1 4578762 1111 000011
Q ss_pred cCCCCceEEEeeccc-chhhhccccCCCCCC---CeeeeCC--cccceeEEecCCCchhh--HHHHHHHHHHH-HhhcCC
Q 038192 166 DRVFPLKLILMSATL-RVEDFISGGRLFRNP---PIIEVPT--RQFPVTVHFSKRTEIVD--YIGQAYKKVMS-IHKRLP 236 (764)
Q Consensus 166 ~~~~~lKlILMSATl-~~~~f~~~~~~f~~~---~vi~i~g--r~~pV~~~y~~~~~~~d--~l~~~~~~v~~-i~~~~~ 236 (764)
...++.|+|.||||+ |++.++ +|++.. .+..+.. |..|.+.+|........ ........+.. +.....
T Consensus 240 ~~~~~~riI~LSATl~N~~dvA---~wL~~~~~~~~~~~~~~~RPvpL~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 316 (1724)
T 4f92_B 240 MTQEDVRLIGLSATLPNYEDVA---TFLRVDPAKGLFYFDNSFRPVPLEQTYVGITEKKAIKRFQIMNEIVYEKIMEHAG 316 (1724)
T ss_dssp HHTCCCEEEEEECSCTTHHHHH---HHTTCCHHHHEEECCGGGCSSCEEEECCEECCCCHHHHHHHHHHHHHHHHTTCCS
T ss_pred hCCCCCcEEEEecccCCHHHHH---HHhCCCCCCCeEEECCCCccCccEEEEeccCCcchhhhhHHHHHHHHHHHHHHhc
Confidence 234688999999999 888888 466542 1223333 33455555543221010 01111111122 222334
Q ss_pred CCCeEEecCCHHHHHHHHHHHHHHHHHhhhhccccccCCccccCCCCCccccchhHHhHHHHHhhcCcccccccccCCCC
Q 038192 237 QGGILVFVTGQREVEYLCSKLRKASKQLLVNSSKENKGNQVVADSEPNATKDINMKEINEAFEIQGYSTEQQTDRFSSYD 316 (764)
Q Consensus 237 ~g~ilvF~~g~~~ie~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~ 316 (764)
.+.+|||++++++++.+++.|.+...+. .... .+....
T Consensus 317 ~~~~LVF~~sR~~~~~~A~~l~~~~~~~------~~~~------------------------------------~~~~~~ 354 (1724)
T 4f92_B 317 KNQVLVFVHSRKETGKTARAIRDMCLEK------DTLG------------------------------------LFLREG 354 (1724)
T ss_dssp SCCEEEECSSTTTTHHHHHHHHHHHHHT------TSTT------------------------------------CCSSCC
T ss_pred CCcEEEECCCHHHHHHHHHHHHHHHhhc------cchh------------------------------------hhcccc
Confidence 5789999999999998888886532211 0000 000000
Q ss_pred CcccccCccccccccCccchhhhhhccchhhhhhhcCCCCCCCCcccccccchhhhhHHHHHHhhcCCCCCCCccccCCC
Q 038192 317 EDQFDIDDNELDALSDSETESETEILGEDEKLVEQKCPMDGDDPVDVLKENWSLGSLKLAFEVLSGKNASGPSSQMKLST 396 (764)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilvfl~g~~~i~~l~~~~~~l~~~~~~~~~~~~~~~~ 396 (764)
.. .. +.+. ..... . ....+ ..+
T Consensus 355 ~~----------------~~---~~~~-------~~~~~-----------~-~~~~l----~~~---------------- 376 (1724)
T 4f92_B 355 SA----------------ST---EVLR-------TEAEQ-----------C-KNLEL----KDL---------------- 376 (1724)
T ss_dssp TT----------------CS---SHHH-------HTTSC-----------C-STHHH----HHH----------------
T ss_pred hh----------------HH---HHHH-------hhhcc-----------c-ccHHH----HHH----------------
Confidence 00 00 0000 00000 0 00000 000
Q ss_pred CCCCCcCCCCCCCCCCCCCCCCCCCccccccCcccCCCCCeEEEecCCCCCHHHHHhhhccCCCCceEEEEecCcccccC
Q 038192 397 PAIPEQCTELPPTPTPEQCPELSSPDVEKMGDNKRAGVGALCVLPLYAMLPAAAQLRVFEDVKEGERLVVVSTNVAETSL 476 (764)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~pLHs~l~~~eQ~~vf~~~~~g~rKVIlsTNIAEtSI 476 (764)
-..-|...||+|+.++|..|.+.|..|..|||+||+.++.||
T Consensus 377 --------------------------------------l~~Gva~HHagL~~~~R~~vE~~F~~G~i~vlvaTsTLa~GV 418 (1724)
T 4f92_B 377 --------------------------------------LPYGFAIHHAGMTRVDRTLVEDLFADKHIQVLVSTATLAWGV 418 (1724)
T ss_dssp --------------------------------------TTTTEEEECSSSCTHHHHHHHHHHHTTCCCEEEECHHHHHHS
T ss_pred --------------------------------------hhcCEEEEcCCCCHHHHHHHHHHHHCCCCeEEEEcchhHhhC
Confidence 012366789999999999999999999999999999999999
Q ss_pred CCCCeEEEEeCCcccceeeccCCCccccceeeccHHhHHHhccccCCCC---CCEEEEccCHHH---hcccCCCCCCCc-
Q 038192 477 TIPGIKYVVDTGREKVKKYNSANGIESYEIQWISKASAAQRAGRAGRTA---PGHCYRLYSSAV---FNNILPDFSCAE- 549 (764)
Q Consensus 477 TIpdV~~VID~G~~K~~~yd~~~~~~~l~~~~iSkasa~QR~GRAGR~~---~G~cyrLys~~~---~~~~l~~~~~PE- 549 (764)
++|.+++||.. ...||+..+. ..++|.+++.||+|||||.+ .|.+|-+.++.. |..++.....-|
T Consensus 419 NlPa~~vVI~~----~~~~~~~~~~----~~~ls~~~~~Qm~GRAGR~g~d~~G~~ii~~~~~~~~~~~~ll~~~~pieS 490 (1724)
T 4f92_B 419 NLPAHTVIIKG----TQVYSPEKGR----WTELGALDILQMLGRAGRPQYDTKGEGILITSHGELQYYLSLLNQQLPIES 490 (1724)
T ss_dssp CCCBSEEEEEC----CEEEETTTTE----EEECCHHHHHHHHTTBSCTTTCSCEEEEEEEESTTCCHHHHHTTTCSCCCC
T ss_pred CCCCceEEEeC----CEEecCcCCC----cccCCHHHHHHhhhhccCCCCCCccEEEEEecchhHHHHHHHHcCCCcchh
Confidence 99999999953 3468887663 35899999999999999987 499999887643 333332211111
Q ss_pred ccccChhhHHHHHHHcC-CCCCC----------------------CC--------CCCCCCCHHHHHHHHHHHHHccccc
Q 038192 550 ISKVPVDGVVLLMKSMN-IDKVS----------------------NF--------PFPTPPEVTALVEAERCLKALEALD 598 (764)
Q Consensus 550 I~r~~L~~~~L~lk~l~-~~~~~----------------------~f--------~~~~pP~~~~i~~ai~~L~~lgAld 598 (764)
-+...+.+.++.--.+| +.+.. .+ +.++..-.+.+..|+..|...|.+.
T Consensus 491 ~l~~~l~d~L~aeI~~g~i~~~~~a~~~l~~T~~~~r~~~~p~~y~~~~~~~~~d~~l~~~~~~~i~~~~~~L~~~~li~ 570 (1724)
T 4f92_B 491 QMVSKLPDMLNAEIVLGNVQNAKDAVNWLGYAYLYIRMLRSPTLYGISHDDLKGDPLLDQRRLDLVHTAALMLDKNNLVK 570 (1724)
T ss_dssp CTTTTHHHHHHHHHHHTSCCBHHHHHHHHHHSHHHHHHHHCTTTTTCCHHHHHHCTTCHHHHHHHHHHHHHHHHHTTSEE
T ss_pred hccccHHHHHHHHHHHhhcCCHHHHHHHHhccHHHHHhhhChhhhccCccccccchHHHHHHHHHHHHHHHHHHHCCCee
Confidence 11122333333322222 11110 00 0111112345778999999999984
Q ss_pred C---CC--CccHHHHHHhcCCCChHHHHHHHHHH
Q 038192 599 S---NG--RLTALGKAMAHYPMSPRHSRMLLTLI 627 (764)
Q Consensus 599 ~---~~--~LT~LG~~la~LPvdp~lgkmLl~~~ 627 (764)
. ++ ..|++|+.++++.++|.-.+.+...+
T Consensus 571 ~d~~~~~~~~T~lGr~~s~~yi~~~t~~~~~~~l 604 (1724)
T 4f92_B 571 YDKKTGNFQVTELGRIASHYYITNDTVQTYNQLL 604 (1724)
T ss_dssp ECTTTCBEEECHHHHHHHHTTCCHHHHHHHHHHC
T ss_pred eecCCCccccchHHHHHHHhcCCHHHHHHHHhhc
Confidence 2 22 68999999999999999999987653
No 41
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=99.91 E-value=2.8e-25 Score=249.65 Aligned_cols=141 Identities=14% Similarity=0.091 Sum_probs=97.7
Q ss_pred CCCchhhHHHHHHHHHcCCeEEEEecCCCCccccHHHHHHHhccCCCCCCCCCceEEEecccHHHHHHHHHHHHHHhCCC
Q 038192 33 DLPIVMMEQEIMEAVNDNSAVIICGETGCGKTTQVPQFLFEAGFGSNRCSSRSGRIGVTQPRRVAVLATAKRVAFELGLH 112 (764)
Q Consensus 33 ~LPi~~~~~~Il~~l~~~~vviI~GeTGSGKTTqvPq~Lle~~~~~~~~~~~~~~Ii~tQPRRiaAisvA~RVa~E~g~~ 112 (764)
.++.+.+|.+.+..+.++ .+++.++||+|||.+...++++..... ..+++|..|++.++.+.++++.+..+..
T Consensus 7 ~~~l~~~Q~~~i~~~~~~-~~ll~~~tG~GKT~~~~~~~~~~~~~~------~~~~liv~P~~~L~~q~~~~~~~~~~~~ 79 (494)
T 1wp9_A 7 LIQPRIYQEVIYAKCKET-NCLIVLPTGLGKTLIAMMIAEYRLTKY------GGKVLMLAPTKPLVLQHAESFRRLFNLP 79 (494)
T ss_dssp HHCCCHHHHHHHHHGGGS-CEEEECCTTSCHHHHHHHHHHHHHHHS------CSCEEEECSSHHHHHHHHHHHHHHBCSC
T ss_pred CCCccHHHHHHHHHHhhC-CEEEEcCCCCCHHHHHHHHHHHHHhcC------CCeEEEEECCHHHHHHHHHHHHHHhCcc
Confidence 456788899999998888 689999999999999998888754311 2589999999999999999988776541
Q ss_pred CCCEeeEEeccCcc-----cCCCceEEEEchHHHHHHHHH-----------HHHHHHHHHhhcc----ccCCccCCCCce
Q 038192 113 LGKEVGFQVRHDKK-----IGDSCSIKFMTDGILLRELKA-----------LYEKQQQLLRSGQ----CIEPKDRVFPLK 172 (764)
Q Consensus 113 lG~~VGY~ir~e~~-----~s~~t~I~f~T~GiLLr~l~~-----------i~de~~~~l~~~~----~~~~~~~~~~lK 172 (764)
+..|+.-...... ...+.+|+|+|++.|.+.+.. |+||+|....... ........+..+
T Consensus 80 -~~~v~~~~g~~~~~~~~~~~~~~~ivv~T~~~l~~~~~~~~~~~~~~~~vIiDEaH~~~~~~~~~~~~~~~~~~~~~~~ 158 (494)
T 1wp9_A 80 -PEKIVALTGEKSPEERSKAWARAKVIVATPQTIENDLLAGRISLEDVSLIVFDEAHRAVGNYAYVFIAREYKRQAKNPL 158 (494)
T ss_dssp -GGGEEEECSCSCHHHHHHHHHHCSEEEECHHHHHHHHHTTSCCTTSCSEEEEETGGGCSTTCHHHHHHHHHHHHCSSCC
T ss_pred -hhheEEeeCCcchhhhhhhccCCCEEEecHHHHHHHHhcCCcchhhceEEEEECCcccCCCCcHHHHHHHHHhcCCCCe
Confidence 1123322211111 012568999999999998752 5688886432110 000111235778
Q ss_pred EEEeecccc
Q 038192 173 LILMSATLR 181 (764)
Q Consensus 173 lILMSATl~ 181 (764)
+++||||+.
T Consensus 159 ~l~lTaTp~ 167 (494)
T 1wp9_A 159 VIGLTASPG 167 (494)
T ss_dssp EEEEESCSC
T ss_pred EEEEecCCC
Confidence 999999994
No 42
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=99.91 E-value=2.5e-25 Score=256.51 Aligned_cols=84 Identities=21% Similarity=0.254 Sum_probs=33.2
Q ss_pred eEEEecCCCCCHHHHHhhhccCCC-CceEEEEecCcccccCCCCCeEEEEeCCcccceeeccCCCccccceeeccHHhHH
Q 038192 437 LCVLPLYAMLPAAAQLRVFEDVKE-GERLVVVSTNVAETSLTIPGIKYVVDTGREKVKKYNSANGIESYEIQWISKASAA 515 (764)
Q Consensus 437 ~~i~pLHs~l~~~eQ~~vf~~~~~-g~rKVIlsTNIAEtSITIpdV~~VID~G~~K~~~yd~~~~~~~l~~~~iSkasa~ 515 (764)
.....+||+|++++|.++++.|.. |..+|+|||+++++||+||+|.+||+ ||++. |.+++.
T Consensus 427 ~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLvaT~~~~~GiDip~v~~VI~--------~d~p~----------s~~~~~ 488 (556)
T 4a2p_A 427 RGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQCNLVVL--------YEYSG----------NVTKMI 488 (556)
T ss_dssp ---------------------------CCEEEEEC-----------CEEEE--------ETCCS----------CHHHHH
T ss_pred cCCcccccccCHHHHHHHHHHhcccCceEEEEEcCchhcCCCchhCCEEEE--------eCCCC----------CHHHHH
Confidence 345567999999999999999999 99999999999999999999999996 77653 567778
Q ss_pred HhccccCCCCCCEEEEccCHHHhc
Q 038192 516 QRAGRAGRTAPGHCYRLYSSAVFN 539 (764)
Q Consensus 516 QR~GRAGR~~~G~cyrLys~~~~~ 539 (764)
||+|| ||.++|.||.|+++...+
T Consensus 489 Qr~GR-gR~~~g~~~~l~~~~~~~ 511 (556)
T 4a2p_A 489 QVRGR-GRAAGSKCILVTSKTEVV 511 (556)
T ss_dssp HC---------CCEEEEESCHHHH
T ss_pred HhcCC-CCCCCceEEEEEeCcchH
Confidence 99999 999999999999987664
No 43
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=99.90 E-value=1e-24 Score=259.37 Aligned_cols=151 Identities=18% Similarity=0.148 Sum_probs=97.3
Q ss_pred hcCCCchhhHHHHHHHHHcCCeEEEEecCCCCccccHHHHHHHhccCCCCCCCCCceEEEecccHHHHHHH-HHHHHHHh
Q 038192 31 RKDLPIVMMEQEIMEAVNDNSAVIICGETGCGKTTQVPQFLFEAGFGSNRCSSRSGRIGVTQPRRVAVLAT-AKRVAFEL 109 (764)
Q Consensus 31 R~~LPi~~~~~~Il~~l~~~~vviI~GeTGSGKTTqvPq~Lle~~~~~~~~~~~~~~Ii~tQPRRiaAisv-A~RVa~E~ 109 (764)
+..++.+.+|.++++.+.+++.++|+++||||||.+...++++....... .+..++++|+.|++.+|.+. ++++....
T Consensus 3 ~~~~~l~~~Q~~~i~~il~g~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~-~~~~~~vlvl~P~~~L~~Q~~~~~l~~~~ 81 (699)
T 4gl2_A 3 GAMLQLRPYQMEVAQPALEGKNIIICLPTGCGKTRVAVYIAKDHLDKKKK-ASEPGKVIVLVNKVLLVEQLFRKEFQPFL 81 (699)
T ss_dssp ----CCCHHHHHHHHHHHSSCCEEECCCTTSCHHHHHHHHHHHHHHHHHH-HTCCCCBCCEESCSHHHHHHHHHTHHHHH
T ss_pred CCCCCccHHHHHHHHHHHhCCCEEEEcCCCCcHHHHHHHHHHHHHHhccc-cCCCCeEEEEECCHHHHHHHHHHHHHHHc
Confidence 35677888999999999998889999999999999877777653211000 01125789999999999999 88887776
Q ss_pred CC--CCCCEeeEEeccCc--ccCCCceEEEEchHHHHHHHH------H-----------HHHHHHHHHhhccccCCc---
Q 038192 110 GL--HLGKEVGFQVRHDK--KIGDSCSIKFMTDGILLRELK------A-----------LYEKQQQLLRSGQCIEPK--- 165 (764)
Q Consensus 110 g~--~lG~~VGY~ir~e~--~~s~~t~I~f~T~GiLLr~l~------~-----------i~de~~~~l~~~~~~~~~--- 165 (764)
+. .++...|..-..+. ......+|+|+|+|+|++.+. . |+||+|++........+.
T Consensus 82 ~~~~~v~~~~g~~~~~~~~~~~~~~~~Ilv~Tp~~L~~~l~~~~~~~~~~~~~~~~~lvViDEaH~~~~~~~~~~i~~~~ 161 (699)
T 4gl2_A 82 KKWYRVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNKEAVYNNIMRHY 161 (699)
T ss_dssp TTTSCEEEEC----CCCCHHHHHHSCSEEEEEHHHHHHHTC--------CCCGGGCSEEEEESGGGCBTTBSSCSHHHHH
T ss_pred CcCceEEEEeCCcchhhHHHhhhcCCCEEEECHHHHHHHHhccccccccceecccCcEEEEECccccCccchHHHHHHHH
Confidence 63 33333333222111 112468999999999998771 1 568888642222111110
Q ss_pred ---------------cCCCCceEEEeecccch
Q 038192 166 ---------------DRVFPLKLILMSATLRV 182 (764)
Q Consensus 166 ---------------~~~~~lKlILMSATl~~ 182 (764)
...+..++|+||||+..
T Consensus 162 l~~~~~~~~~~~~~~~~~~~~~il~lTATp~~ 193 (699)
T 4gl2_A 162 LMQKLKNNRLKKENKPVIPLPQILGLTASPGV 193 (699)
T ss_dssp HHHHHHHHHHHC----CCCCCEEEEECSCCCC
T ss_pred HHhhhcccccccccccCCCCCEEEEecccccc
Confidence 01166799999999964
No 44
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=99.90 E-value=7.2e-25 Score=261.51 Aligned_cols=312 Identities=16% Similarity=0.210 Sum_probs=197.0
Q ss_pred hHHHhhhcCCCc--hhhHHHHHHHHHcC------CeEEEEecCCCCccccHHHHHHHhccCCCCCCCCCceEEEecccHH
Q 038192 25 NEVENNRKDLPI--VMMEQEIMEAVNDN------SAVIICGETGCGKTTQVPQFLFEAGFGSNRCSSRSGRIGVTQPRRV 96 (764)
Q Consensus 25 ~~~~~~R~~LPi--~~~~~~Il~~l~~~------~vviI~GeTGSGKTTqvPq~Lle~~~~~~~~~~~~~~Ii~tQPRRi 96 (764)
..+.++.+.||. ...|.+.++.+.++ ..++++|+||||||......+++.... + .++++..|+|+
T Consensus 356 ~~~~~~~~~lpf~lt~~Q~~ai~~I~~~l~~~~~~~~Ll~a~TGSGKTlvall~il~~l~~-g------~qvlvlaPtr~ 428 (780)
T 1gm5_A 356 KLAEEFIKSLPFKLTNAQKRAHQEIRNDMISEKPMNRLLQGDVGSGKTVVAQLAILDNYEA-G------FQTAFMVPTSI 428 (780)
T ss_dssp HHHHHHHHHSSSCCCHHHHHHHHHHHHHHHSSSCCCCEEECCSSSSHHHHHHHHHHHHHHH-T------SCEEEECSCHH
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHhhccccCCCcEEEEcCCCCCHHHHHHHHHHHHHHc-C------CeEEEEeCcHH
Confidence 345555555654 56677777766553 367999999999999988888765321 1 47899999999
Q ss_pred HHHHHHHHHHHHhCCCCCCEeeEEeccCcc----------cCCCceEEEEchHHHHHHHH------HHHHHHHHHHhhcc
Q 038192 97 AVLATAKRVAFELGLHLGKEVGFQVRHDKK----------IGDSCSIKFMTDGILLRELK------ALYEKQQQLLRSGQ 160 (764)
Q Consensus 97 aAisvA~RVa~E~g~~lG~~VGY~ir~e~~----------~s~~t~I~f~T~GiLLr~l~------~i~de~~~~l~~~~ 160 (764)
+|.+.++++.+..+ ..|..|+.-.+..+. .+...+|+++|++.|.+.+. .|+||+|+.-.. .
T Consensus 429 La~Q~~~~l~~~~~-~~gi~v~~l~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~~~~~~~l~lVVIDEaHr~g~~-q 506 (780)
T 1gm5_A 429 LAIQHYRRTVESFS-KFNIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQEDVHFKNLGLVIIDEQHRFGVK-Q 506 (780)
T ss_dssp HHHHHHHHHHHHHT-CSSCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHHHHCCCCSCCCEEEEESCCCC-----
T ss_pred HHHHHHHHHHHHhh-hcCceEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhhhhhccCCceEEecccchhhHH-H
Confidence 99999998876653 456666654444321 12358999999998865331 156888874111 1
Q ss_pred ccCCccCCCCceEEEeecccchhhhccccCCCCCCCeeee---CCcccceeEEecCCCchhhHHHHHHHHHHHHhhcCCC
Q 038192 161 CIEPKDRVFPLKLILMSATLRVEDFISGGRLFRNPPIIEV---PTRQFPVTVHFSKRTEIVDYIGQAYKKVMSIHKRLPQ 237 (764)
Q Consensus 161 ~~~~~~~~~~lKlILMSATl~~~~f~~~~~~f~~~~vi~i---~gr~~pV~~~y~~~~~~~d~l~~~~~~v~~i~~~~~~ 237 (764)
...+.....+.++++||||.....+.. .+|+...+..+ |....|+..++..... ....+..+.+.. ...
T Consensus 507 r~~l~~~~~~~~vL~mSATp~p~tl~~--~~~g~~~~s~i~~~p~~r~~i~~~~~~~~~----~~~l~~~i~~~l--~~g 578 (780)
T 1gm5_A 507 REALMNKGKMVDTLVMSATPIPRSMAL--AFYGDLDVTVIDEMPPGRKEVQTMLVPMDR----VNEVYEFVRQEV--MRG 578 (780)
T ss_dssp -CCCCSSSSCCCEEEEESSCCCHHHHH--HHTCCSSCEEECCCCSSCCCCEECCCCSST----HHHHHHHHHHHT--TTS
T ss_pred HHHHHHhCCCCCEEEEeCCCCHHHHHH--HHhCCcceeeeeccCCCCcceEEEEeccch----HHHHHHHHHHHH--hcC
Confidence 112223345789999999986665543 35555433322 3344577766654322 111222221111 134
Q ss_pred CCeEEecCCHHHHHHHHHHHHHHHHHhhhhccccccCCccccCCCCCccccchhHHhHHHHHhhcCcccccccccCCCCC
Q 038192 238 GGILVFVTGQREVEYLCSKLRKASKQLLVNSSKENKGNQVVADSEPNATKDINMKEINEAFEIQGYSTEQQTDRFSSYDE 317 (764)
Q Consensus 238 g~ilvF~~g~~~ie~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~ 317 (764)
+.++||++..++.+.+ ..
T Consensus 579 ~qvlVf~~~ie~se~l----~~---------------------------------------------------------- 596 (780)
T 1gm5_A 579 GQAFIVYPLIEESDKL----NV---------------------------------------------------------- 596 (780)
T ss_dssp CCBCCBCCCC----------------------------------------------------------------------
T ss_pred CcEEEEecchhhhhhh----hH----------------------------------------------------------
Confidence 5677887754432211 00
Q ss_pred cccccCccccccccCccchhhhhhccchhhhhhhcCCCCCCCCcccccccchhhhhHHHHHHhhcCCCCCCCccccCCCC
Q 038192 318 DQFDIDDNELDALSDSETESETEILGEDEKLVEQKCPMDGDDPVDVLKENWSLGSLKLAFEVLSGKNASGPSSQMKLSTP 397 (764)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilvfl~g~~~i~~l~~~~~~l~~~~~~~~~~~~~~~~~ 397 (764)
.......+.|.
T Consensus 597 -----------------------------------------------------~~a~~l~~~L~---------------- 607 (780)
T 1gm5_A 597 -----------------------------------------------------KSAVEMYEYLS---------------- 607 (780)
T ss_dssp -----------------------------------------------------CHHHHHHHSGG----------------
T ss_pred -----------------------------------------------------HHHHHHHHHHH----------------
Confidence 00000000010
Q ss_pred CCCCcCCCCCCCCCCCCCCCCCCCccccccCcccCCCCCeEEEecCCCCCHHHHHhhhccCCCCceEEEEecCcccccCC
Q 038192 398 AIPEQCTELPPTPTPEQCPELSSPDVEKMGDNKRAGVGALCVLPLYAMLPAAAQLRVFEDVKEGERLVVVSTNVAETSLT 477 (764)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~pLHs~l~~~eQ~~vf~~~~~g~rKVIlsTNIAEtSIT 477 (764)
... .+++.+..+||+|++++|.++++.|.+|..+|+|||+++|+||+
T Consensus 608 ------------------------------~~~---~~~~~v~~lHG~m~~~eR~~v~~~F~~G~~~ILVaT~vie~GID 654 (780)
T 1gm5_A 608 ------------------------------KEV---FPEFKLGLMHGRLSQEEKDRVMLEFAEGRYDILVSTTVIEVGID 654 (780)
T ss_dssp ------------------------------GSC---C---CBCCCCSSSCCSCSHHHHHHHTTTSSSBCCCSSCCCSCSC
T ss_pred ------------------------------hhh---cCCCcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEECCCCCcccc
Confidence 000 02356888999999999999999999999999999999999999
Q ss_pred CCCeEEEEeCCcccceeeccCCCccccceeeccHHhHHHhccccCCCC-CCEEEEccC
Q 038192 478 IPGIKYVVDTGREKVKKYNSANGIESYEIQWISKASAAQRAGRAGRTA-PGHCYRLYS 534 (764)
Q Consensus 478 IpdV~~VID~G~~K~~~yd~~~~~~~l~~~~iSkasa~QR~GRAGR~~-~G~cyrLys 534 (764)
||+|++||. ||+.. .+.+++.||+|||||.+ +|.||.+++
T Consensus 655 iP~v~~VIi--------~d~~r---------~~l~~l~Qr~GRaGR~g~~g~~ill~~ 695 (780)
T 1gm5_A 655 VPRANVMVI--------ENPER---------FGLAQLHQLRGRVGRGGQEAYCFLVVG 695 (780)
T ss_dssp CTTCCEEEB--------CSCSS---------SCTTHHHHHHHTSCCSSTTCEEECCCC
T ss_pred CCCCCEEEE--------eCCCC---------CCHHHHHHHhcccCcCCCCCEEEEEEC
Confidence 999999996 55543 13456779999999976 599999997
No 45
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=99.89 E-value=5e-24 Score=263.60 Aligned_cols=204 Identities=18% Similarity=0.122 Sum_probs=125.0
Q ss_pred CchhhHHHHHHHHHcCCeEEEEecCCCCccccHHHHHHHhccCCCCCCCCCceEEEecccHHHHHHHHHHHHHHhCCCCC
Q 038192 35 PIVMMEQEIMEAVNDNSAVIICGETGCGKTTQVPQFLFEAGFGSNRCSSRSGRIGVTQPRRVAVLATAKRVAFELGLHLG 114 (764)
Q Consensus 35 Pi~~~~~~Il~~l~~~~vviI~GeTGSGKTTqvPq~Lle~~~~~~~~~~~~~~Ii~tQPRRiaAisvA~RVa~E~g~~lG 114 (764)
.-+..|.+.+..+.+++.++++|+||||||+..-..+++.. .. ..+++|..|+|.+|.++++++.. ++ ..|
T Consensus 78 ~pt~iQ~~ai~~il~g~dvlv~ApTGSGKTl~~l~~il~~~-~~------~~~~Lil~PtreLa~Q~~~~l~~-l~-~~~ 148 (1104)
T 4ddu_A 78 DLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLA-RK------GKKSALVFPTVTLVKQTLERLQK-LA-DEK 148 (1104)
T ss_dssp CCCHHHHHHHHHHTTTCCEEECCSTTCCHHHHHHHHHHHHH-TT------TCCEEEEESSHHHHHHHHHHHHT-TS-CTT
T ss_pred CCCHHHHHHHHHHHcCCCEEEEeCCCCcHHHHHHHHHHHHH-hc------CCeEEEEechHHHHHHHHHHHHH-hh-CCC
Confidence 45566777788888888899999999999994333333332 22 25899999999999999998877 66 566
Q ss_pred CEeeEEeccCcc---------c-CCCceEEEEchHHHHHHHHH---------HHHHHH----------HHHh-hccccC-
Q 038192 115 KEVGFQVRHDKK---------I-GDSCSIKFMTDGILLRELKA---------LYEKQQ----------QLLR-SGQCIE- 163 (764)
Q Consensus 115 ~~VGY~ir~e~~---------~-s~~t~I~f~T~GiLLr~l~~---------i~de~~----------~~l~-~~~~~~- 163 (764)
-.|+.-.+..+. . ...++|+++|+|.|++.+.. |+||+| +++. .|+...
T Consensus 149 i~v~~l~Gg~~~~er~~~~~~l~~g~~~IlV~Tp~rL~~~l~~l~~~~l~~lViDEaH~l~~~~r~~Dr~L~~~gf~~~~ 228 (1104)
T 4ddu_A 149 VKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREKLSQKRFDFVFVDDVDAVLKASRNIDTLLMMVGIPEEI 228 (1104)
T ss_dssp SCEEEECTTCCTTHHHHHHHHHHTSCCSEEEEEHHHHHHSHHHHHTSCCSEEEESCHHHHTTSSHHHHHHHHTSSCCHHH
T ss_pred CeEEEEeCCCCHHHHHHHHHHHhCCCCCEEEECHHHHHHHHHhhcccCcCEEEEeCCCccccccccchhhhHhcCCCHHH
Confidence 778877766543 1 12489999999999887643 458884 4555 454322
Q ss_pred C---c------------cCCCCceEEEeecccchhhhccccCCCCCCCeeeeCCc---ccceeEEecCCCchhhHHHHHH
Q 038192 164 P---K------------DRVFPLKLILMSATLRVEDFISGGRLFRNPPIIEVPTR---QFPVTVHFSKRTEIVDYIGQAY 225 (764)
Q Consensus 164 ~---~------------~~~~~lKlILMSATl~~~~f~~~~~~f~~~~vi~i~gr---~~pV~~~y~~~~~~~d~l~~~~ 225 (764)
+ . ...++.++++||||+..+.... .++.+...+.+... .-.+...|..... .+.+...+
T Consensus 229 i~~il~~l~~~~~~~~~~~~~~~q~ll~SAT~~p~~~~~--~~~~~~l~i~v~~~~~~~~~i~~~~~~~~k-~~~L~~ll 305 (1104)
T 4ddu_A 229 IRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRP--LLFRDLLNFTVGRLVSVARNITHVRISSRS-KEKLVELL 305 (1104)
T ss_dssp HHHHHHHHHHTSCCCCCSSCCCCEEEEECBSSCCCSSTT--HHHHHHTCCCCCBCCCCCCCEEEEEESCCC-HHHHHHHH
T ss_pred HHHHHHhcccchhhhhhccCCCceEEEEcCCCCcHHHHH--HHhhcceeEEeccCCCCcCCceeEEEecCH-HHHHHHHH
Confidence 1 0 1116789999999963322110 01111111222211 1123333432211 22222221
Q ss_pred HHHHHHhhcCCCCCeEEecCCHHHHHHHHHHHH
Q 038192 226 KKVMSIHKRLPQGGILVFVTGQREVEYLCSKLR 258 (764)
Q Consensus 226 ~~v~~i~~~~~~g~ilvF~~g~~~ie~l~~~L~ 258 (764)
+ . .++.+|||+++...++.++..|+
T Consensus 306 ~-------~-~~~~~LVF~~s~~~a~~l~~~L~ 330 (1104)
T 4ddu_A 306 E-------I-FRDGILIFAQTEEEGKELYEYLK 330 (1104)
T ss_dssp H-------H-HCSSEEEEESSSHHHHHHHHHHH
T ss_pred H-------h-cCCCEEEEECcHHHHHHHHHHHH
Confidence 1 1 13788999999888887776664
No 46
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=99.88 E-value=6.5e-23 Score=247.74 Aligned_cols=83 Identities=22% Similarity=0.266 Sum_probs=38.2
Q ss_pred eEEEecCCCCCHHHHHhhhccCCC-CceEEEEecCcccccCCCCCeEEEEeCCcccceeeccCCCccccceeeccHHhHH
Q 038192 437 LCVLPLYAMLPAAAQLRVFEDVKE-GERLVVVSTNVAETSLTIPGIKYVVDTGREKVKKYNSANGIESYEIQWISKASAA 515 (764)
Q Consensus 437 ~~i~pLHs~l~~~eQ~~vf~~~~~-g~rKVIlsTNIAEtSITIpdV~~VID~G~~K~~~yd~~~~~~~l~~~~iSkasa~ 515 (764)
.....+||+|++.+|.++++.|.. |..+|+|||+++++||+||+|.+||. ||++. |.+++.
T Consensus 668 ~~~~~~hg~~~~~eR~~~l~~F~~~g~~~vLVaT~~~~~GIDlp~v~~VI~--------yd~p~----------s~~~~i 729 (797)
T 4a2q_A 668 RGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQCNLVVL--------YEYSG----------NVTKMI 729 (797)
T ss_dssp --------------------------CCSEEEEECC-------CCCSEEEE--------ESCCS----------CHHHHH
T ss_pred cCCcccCCCCCHHHHHHHHHHhhccCCceEEEEcCchhcCCCchhCCEEEE--------eCCCC----------CHHHHH
Confidence 345677999999999999999998 99999999999999999999999996 77543 567788
Q ss_pred HhccccCCCCCCEEEEccCHHHh
Q 038192 516 QRAGRAGRTAPGHCYRLYSSAVF 538 (764)
Q Consensus 516 QR~GRAGR~~~G~cyrLys~~~~ 538 (764)
||+|| ||.++|.||+|+++...
T Consensus 730 Qr~GR-GR~~~g~~i~l~~~~~~ 751 (797)
T 4a2q_A 730 QVRGR-GRAAGSKCILVTSKTEV 751 (797)
T ss_dssp TC--------CCCEEEEECCHHH
T ss_pred HhcCC-CCCCCceEEEEEeCCcH
Confidence 99999 99999999999998765
No 47
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=99.87 E-value=6.4e-23 Score=255.13 Aligned_cols=294 Identities=16% Similarity=0.177 Sum_probs=192.4
Q ss_pred hhhHHHHHHHHHc----CC--eEEEEecCCCCccccHHHHHHHhccCCCCCCCCCceEEEecccHHHHHHHHHHHHHHhC
Q 038192 37 VMMEQEIMEAVND----NS--AVIICGETGCGKTTQVPQFLFEAGFGSNRCSSRSGRIGVTQPRRVAVLATAKRVAFELG 110 (764)
Q Consensus 37 ~~~~~~Il~~l~~----~~--vviI~GeTGSGKTTqvPq~Lle~~~~~~~~~~~~~~Ii~tQPRRiaAisvA~RVa~E~g 110 (764)
...|.+.++.+.. ++ .++++|+||||||.+....++..... ..++++..|++.+|.+.++++.+.++
T Consensus 605 t~~Q~~ai~~il~~~~~g~p~d~ll~~~TGsGKT~val~aa~~~~~~-------g~~vlvlvPt~~La~Q~~~~~~~~~~ 677 (1151)
T 2eyq_A 605 TPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDN-------HKQVAVLVPTTLLAQQHYDNFRDRFA 677 (1151)
T ss_dssp CHHHHHHHHHHHHHHHSSSCCEEEEECCCCTTTHHHHHHHHHHHHTT-------TCEEEEECSSHHHHHHHHHHHHHHST
T ss_pred CHHHHHHHHHHHHHHhcCCcCcEEEECCCCCCHHHHHHHHHHHHHHh-------CCeEEEEechHHHHHHHHHHHHHHhh
Confidence 6667777776654 44 78999999999998765444443221 14899999999999999998877554
Q ss_pred CCCCCEeeEEeccCccc----------CCCceEEEEchHHHHHHHH------HHHHHHHHHHhhccccCCccCCCCceEE
Q 038192 111 LHLGKEVGFQVRHDKKI----------GDSCSIKFMTDGILLRELK------ALYEKQQQLLRSGQCIEPKDRVFPLKLI 174 (764)
Q Consensus 111 ~~lG~~VGY~ir~e~~~----------s~~t~I~f~T~GiLLr~l~------~i~de~~~~l~~~~~~~~~~~~~~lKlI 174 (764)
..|..|++-.++.+.. ....+|+++|++.|.+.+. -|+||+|+.-. .....+....++.+++
T Consensus 678 -~~~i~v~~l~~~~~~~~~~~~~~~l~~g~~dIvV~T~~ll~~~~~~~~l~lvIiDEaH~~g~-~~~~~l~~l~~~~~vl 755 (1151)
T 2eyq_A 678 -NWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLIVDEEHRFGV-RHKERIKAMRANVDIL 755 (1151)
T ss_dssp -TTTCCEEEESTTSCHHHHHHHHHHHHTTCCSEEEECTHHHHSCCCCSSEEEEEEESGGGSCH-HHHHHHHHHHTTSEEE
T ss_pred -cCCCeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhCCccccccceEEEechHhcCh-HHHHHHHHhcCCCCEE
Confidence 4456677766554321 2357899999987744221 15688776210 0000111223568999
Q ss_pred EeecccchhhhccccCCCCCCCeeee-CCcccceeEEecCCCchhhHHHHHHHHHHHHhhcCCCCCeEEecCCHHHHHHH
Q 038192 175 LMSATLRVEDFISGGRLFRNPPIIEV-PTRQFPVTVHFSKRTEIVDYIGQAYKKVMSIHKRLPQGGILVFVTGQREVEYL 253 (764)
Q Consensus 175 LMSATl~~~~f~~~~~~f~~~~vi~i-~gr~~pV~~~y~~~~~~~d~l~~~~~~v~~i~~~~~~g~ilvF~~g~~~ie~l 253 (764)
+||||+....+........+..++.. +....++..++..... ..... .+.... ...+.++||++..+.++.+
T Consensus 756 ~lSATp~p~~l~~~~~~~~~~~~i~~~~~~r~~i~~~~~~~~~-~~i~~----~il~~l--~~g~qvlvf~~~v~~~~~l 828 (1151)
T 2eyq_A 756 TLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDS-MVVRE----AILREI--LRGGQVYYLYNDVENIQKA 828 (1151)
T ss_dssp EEESSCCCHHHHHHHTTTSEEEECCCCCCBCBCEEEEEEECCH-HHHHH----HHHHHH--TTTCEEEEECCCSSCHHHH
T ss_pred EEcCCCChhhHHHHHhcCCCceEEecCCCCccccEEEEecCCH-HHHHH----HHHHHH--hcCCeEEEEECCHHHHHHH
Confidence 99999855443311112222222222 2344667665543221 11111 111111 2356788888877777666
Q ss_pred HHHHHHHHHHhhhhccccccCCccccCCCCCccccchhHHhHHHHHhhcCcccccccccCCCCCcccccCccccccccCc
Q 038192 254 CSKLRKASKQLLVNSSKENKGNQVVADSEPNATKDINMKEINEAFEIQGYSTEQQTDRFSSYDEDQFDIDDNELDALSDS 333 (764)
Q Consensus 254 ~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (764)
++.|++.
T Consensus 829 ~~~L~~~------------------------------------------------------------------------- 835 (1151)
T 2eyq_A 829 AERLAEL------------------------------------------------------------------------- 835 (1151)
T ss_dssp HHHHHHH-------------------------------------------------------------------------
T ss_pred HHHHHHh-------------------------------------------------------------------------
Confidence 6555430
Q ss_pred cchhhhhhccchhhhhhhcCCCCCCCCcccccccchhhhhHHHHHHhhcCCCCCCCccccCCCCCCCCcCCCCCCCCCCC
Q 038192 334 ETESETEILGEDEKLVEQKCPMDGDDPVDVLKENWSLGSLKLAFEVLSGKNASGPSSQMKLSTPAIPEQCTELPPTPTPE 413 (764)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~~~ilvfl~g~~~i~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 413 (764)
T Consensus 836 -------------------------------------------------------------------------------- 835 (1151)
T 2eyq_A 836 -------------------------------------------------------------------------------- 835 (1151)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCccccccCcccCCCCCeEEEecCCCCCHHHHHhhhccCCCCceEEEEecCcccccCCCCCeEEEEeCCcccce
Q 038192 414 QCPELSSPDVEKMGDNKRAGVGALCVLPLYAMLPAAAQLRVFEDVKEGERLVVVSTNVAETSLTIPGIKYVVDTGREKVK 493 (764)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~~~~~~~~i~pLHs~l~~~eQ~~vf~~~~~g~rKVIlsTNIAEtSITIpdV~~VID~G~~K~~ 493 (764)
.+++.+..+||+|+..+|.++++.|.+|..+|+|||+++|+||+||++.+||.
T Consensus 836 --------------------~p~~~v~~lhg~~~~~eR~~il~~F~~g~~~VLVaT~v~e~GiDip~v~~VIi------- 888 (1151)
T 2eyq_A 836 --------------------VPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIII------- 888 (1151)
T ss_dssp --------------------CTTSCEEECCSSCCHHHHHHHHHHHHTTSCCEEEESSTTGGGSCCTTEEEEEE-------
T ss_pred --------------------CCCCeEEEEeCCCCHHHHHHHHHHHHcCCCcEEEECCcceeeecccCCcEEEE-------
Confidence 01245888999999999999999999999999999999999999999999994
Q ss_pred eeccCCCccccceeeccHHhHHHhccccCCCC-CCEEEEccCHH
Q 038192 494 KYNSANGIESYEIQWISKASAAQRAGRAGRTA-PGHCYRLYSSA 536 (764)
Q Consensus 494 ~yd~~~~~~~l~~~~iSkasa~QR~GRAGR~~-~G~cyrLys~~ 536 (764)
+++.. .+-+++.||+||+||.+ +|.||.+++..
T Consensus 889 -~~~~~---------~~l~~l~Qr~GRvgR~g~~g~~~ll~~~~ 922 (1151)
T 2eyq_A 889 -ERADH---------FGLAQLHQLRGRVGRSHHQAYAWLLTPHP 922 (1151)
T ss_dssp -TTTTS---------SCHHHHHHHHTTCCBTTBCEEEEEEECCG
T ss_pred -eCCCC---------CCHHHHHHHHhccCcCCCceEEEEEECCc
Confidence 33321 13456789999999987 59999999764
No 48
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=99.87 E-value=4.3e-23 Score=209.97 Aligned_cols=136 Identities=21% Similarity=0.228 Sum_probs=118.2
Q ss_pred eEEEecCCCCCHHHHHhhhccCCCCceEEEEecCcccccCCCCCeEEEEeCCcccceeeccCCCccccceeeccHHhHHH
Q 038192 437 LCVLPLYAMLPAAAQLRVFEDVKEGERLVVVSTNVAETSLTIPGIKYVVDTGREKVKKYNSANGIESYEIQWISKASAAQ 516 (764)
Q Consensus 437 ~~i~pLHs~l~~~eQ~~vf~~~~~g~rKVIlsTNIAEtSITIpdV~~VID~G~~K~~~yd~~~~~~~l~~~~iSkasa~Q 516 (764)
+.+.++||+|++.+|.++++.|++|..+|+||||+|++|||||+|.+|||++. |.|.+++.|
T Consensus 56 ~~~~~lhg~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gidi~~v~~Vi~~~~------------------p~~~~~~~q 117 (212)
T 3eaq_A 56 HPAQALHGDLSQGERERVLGAFRQGEVRVLVATDVAARGLDIPQVDLVVHYRL------------------PDRAEAYQH 117 (212)
T ss_dssp CCEEEECSSSCHHHHHHHHHHHHSSSCCEEEECTTTTCSSSCCCBSEEEESSC------------------CSSHHHHHH
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCCeEEEecChhhcCCCCccCcEEEECCC------------------CcCHHHHHH
Confidence 34788999999999999999999999999999999999999999999998654 347889999
Q ss_pred hccccCCCC-CCEEEEccCHHH--------------hcccCCCCCCCcccccChhhHHHHHHHcCCCCCCCC-----CCC
Q 038192 517 RAGRAGRTA-PGHCYRLYSSAV--------------FNNILPDFSCAEISKVPVDGVVLLMKSMNIDKVSNF-----PFP 576 (764)
Q Consensus 517 R~GRAGR~~-~G~cyrLys~~~--------------~~~~l~~~~~PEI~r~~L~~~~L~lk~l~~~~~~~f-----~~~ 576 (764)
|+|||||.+ +|.||.+|+... +. .++....|||.+..++.+++.++.++.++...| .++
T Consensus 118 r~GR~gR~g~~g~~~~l~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~ei~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~ 196 (212)
T 3eaq_A 118 RSGRTGRAGRGGRVVLLYGPRERRDVEALERAVGRRFK-RVNPPTPEEVLEAKWRHLLARLARVPEKDYRLYQDFAGRLF 196 (212)
T ss_dssp HHTTBCCCC--BEEEEEECGGGHHHHHHHHHHHSSCCE-ECCCCCHHHHHHHHHHHHHHHHTTSCHHHHTTTHHHHHHHH
T ss_pred HhcccCCCCCCCeEEEEEchhHHHHHHHHHHHhcCcCe-ecCCCCHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 999999997 699999999876 43 366778889999999999999999887655555 468
Q ss_pred CCCCHHHHHHHHHHH
Q 038192 577 TPPEVTALVEAERCL 591 (764)
Q Consensus 577 ~pP~~~~i~~ai~~L 591 (764)
++|+++.+..|+..|
T Consensus 197 ~~~~~~~l~~al~~l 211 (212)
T 3eaq_A 197 AEGRVEVVAALLALL 211 (212)
T ss_dssp HHTCHHHHHHHHHHH
T ss_pred hcCCHHHHHHHHHhh
Confidence 889999999998765
No 49
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=99.87 E-value=2.5e-22 Score=246.00 Aligned_cols=84 Identities=21% Similarity=0.254 Sum_probs=39.2
Q ss_pred eEEEecCCCCCHHHHHhhhccCCC-CceEEEEecCcccccCCCCCeEEEEeCCcccceeeccCCCccccceeeccHHhHH
Q 038192 437 LCVLPLYAMLPAAAQLRVFEDVKE-GERLVVVSTNVAETSLTIPGIKYVVDTGREKVKKYNSANGIESYEIQWISKASAA 515 (764)
Q Consensus 437 ~~i~pLHs~l~~~eQ~~vf~~~~~-g~rKVIlsTNIAEtSITIpdV~~VID~G~~K~~~yd~~~~~~~l~~~~iSkasa~ 515 (764)
.....+||+|++.+|.++++.|.. |..+|+|||++|++||+||+|.+||+ ||+.. |.+++.
T Consensus 668 ~~~~~~hg~m~~~eR~~il~~Fr~~g~~~VLVaT~~~~eGIDlp~v~~VI~--------yD~p~----------s~~~~i 729 (936)
T 4a2w_A 668 RGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQCNLVVL--------YEYSG----------NVTKMI 729 (936)
T ss_dssp --------------------------CCSEEEEECC------CCCCSEEEE--------ESCCS----------CSHHHH
T ss_pred CCCcccCCCCCHHHHHHHHHHhhccCCeeEEEEeCchhcCCcchhCCEEEE--------eCCCC----------CHHHHH
Confidence 445677999999999999999998 99999999999999999999999996 77654 445667
Q ss_pred HhccccCCCCCCEEEEccCHHHhc
Q 038192 516 QRAGRAGRTAPGHCYRLYSSAVFN 539 (764)
Q Consensus 516 QR~GRAGR~~~G~cyrLys~~~~~ 539 (764)
||+|| ||.++|.||.|+++...+
T Consensus 730 Qr~GR-GR~~~g~vi~Li~~~t~e 752 (936)
T 4a2w_A 730 QVRGR-GRAAGSKCILVTSKTEVV 752 (936)
T ss_dssp CC--------CCCEEEEESCHHHH
T ss_pred HhcCC-CCCCCCEEEEEEeCCCHH
Confidence 99999 999999999999987653
No 50
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=99.86 E-value=7.2e-23 Score=232.39 Aligned_cols=130 Identities=15% Similarity=0.117 Sum_probs=96.0
Q ss_pred CCCchhhHHHHHHHHHcCCeEEEEecCCCCccccHHHHHHHhccCCCCCCCCCceEEEecccHHHHHHHHHHHHHHhCCC
Q 038192 33 DLPIVMMEQEIMEAVNDNSAVIICGETGCGKTTQVPQFLFEAGFGSNRCSSRSGRIGVTQPRRVAVLATAKRVAFELGLH 112 (764)
Q Consensus 33 ~LPi~~~~~~Il~~l~~~~vviI~GeTGSGKTTqvPq~Lle~~~~~~~~~~~~~~Ii~tQPRRiaAisvA~RVa~E~g~~ 112 (764)
.+..+.+|.+.++++.++..++++++||||||.+...++.+.+ .+++|..|++.++.+.++++.. +
T Consensus 91 ~~~l~~~Q~~ai~~i~~~~~~ll~~~TGsGKT~~~l~~i~~~~----------~~~Lvl~P~~~L~~Q~~~~~~~-~--- 156 (472)
T 2fwr_A 91 EISLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINELS----------TPTLIVVPTLALAEQWKERLGI-F--- 156 (472)
T ss_dssp CCCBCHHHHHHHHHHTTTTEEEEECCTTSCHHHHHHHHHHHHC----------SCEEEEESSHHHHHHHHHHGGG-G---
T ss_pred CCCcCHHHHHHHHHHHhcCCEEEEeCCCCCHHHHHHHHHHHcC----------CCEEEEECCHHHHHHHHHHHHh-C---
Confidence 4567889999999998888899999999999998877777641 4788999999999998887776 5
Q ss_pred CCCE-eeEEeccCcccCCCceEEEEchHHHHHHHHH--------HHHHHHHHHhhccccCCccCCCCceEEEeecccc
Q 038192 113 LGKE-VGFQVRHDKKIGDSCSIKFMTDGILLRELKA--------LYEKQQQLLRSGQCIEPKDRVFPLKLILMSATLR 181 (764)
Q Consensus 113 lG~~-VGY~ir~e~~~s~~t~I~f~T~GiLLr~l~~--------i~de~~~~l~~~~~~~~~~~~~~lKlILMSATl~ 181 (764)
|.. ||.-.. ..+...+|+++|++.|.+.+.. |+||+|.....++.. +....+..++++||||+.
T Consensus 157 -~~~~v~~~~g---~~~~~~~Ivv~T~~~l~~~~~~~~~~~~liIvDEaH~~~~~~~~~-~~~~~~~~~~l~lSATp~ 229 (472)
T 2fwr_A 157 -GEEYVGEFSG---RIKELKPLTVSTYDSAYVNAEKLGNRFMLLIFDEVHHLPAESYVQ-IAQMSIAPFRLGLTATFE 229 (472)
T ss_dssp -CGGGEEEBSS---SCBCCCSEEEEEHHHHHHTHHHHTTTCSEEEEETGGGTTSTTTHH-HHHTCCCSEEEEEESCCC
T ss_pred -CCcceEEECC---CcCCcCCEEEEEcHHHHHHHHHhcCCCCEEEEECCcCCCChHHHH-HHHhcCCCeEEEEecCcc
Confidence 334 543222 2234578999999999987743 568888754433221 222335678999999995
No 51
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=99.86 E-value=9.1e-23 Score=218.19 Aligned_cols=141 Identities=19% Similarity=0.221 Sum_probs=119.7
Q ss_pred eEEEecCCCCCHHHHHhhhccCCCCceEEEEecCcccccCCCCCeEEEEeCCcccceeeccCCCccccceeeccHHhHHH
Q 038192 437 LCVLPLYAMLPAAAQLRVFEDVKEGERLVVVSTNVAETSLTIPGIKYVVDTGREKVKKYNSANGIESYEIQWISKASAAQ 516 (764)
Q Consensus 437 ~~i~pLHs~l~~~eQ~~vf~~~~~g~rKVIlsTNIAEtSITIpdV~~VID~G~~K~~~yd~~~~~~~l~~~~iSkasa~Q 516 (764)
+.+.+|||+|++.+|.++++.|++|.++|+||||+|++|||||+|.+|||++++ .|.+++.|
T Consensus 53 ~~~~~lhg~l~~~~r~~~~~~f~~g~~~vLVaT~va~~Gidi~~v~~VI~~d~p------------------~s~~~y~Q 114 (300)
T 3i32_A 53 HPAQALHGDMSQGERERVMGAFRQGEVRVLVATDVAARGLDIPQVDLVVHYRMP------------------DRAEAYQH 114 (300)
T ss_dssp CCEEEECSCCCTHHHHHHHHHHHHTSCCEEEECSTTTCSTTCCCCSEEEESSCC------------------SSTTHHHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHhhcCCceEEEEechhhcCccccceeEEEEcCCC------------------CCHHHHHH
Confidence 458899999999999999999999999999999999999999999999996653 36678889
Q ss_pred hccccCCCC-CCEEEEccCHHH--------------hcccCCCCCCCcccccChhhHHHHHHHcCCCCCCCC-----CCC
Q 038192 517 RAGRAGRTA-PGHCYRLYSSAV--------------FNNILPDFSCAEISKVPVDGVVLLMKSMNIDKVSNF-----PFP 576 (764)
Q Consensus 517 R~GRAGR~~-~G~cyrLys~~~--------------~~~~l~~~~~PEI~r~~L~~~~L~lk~l~~~~~~~f-----~~~ 576 (764)
|+|||||.+ +|.||.+|+... +.. ++..+.|||++..++.++++++.++.+++..| .++
T Consensus 115 r~GRagR~g~~G~~i~l~~~~e~~~~~~ie~~~~~~~~~-~~~~~~~ei~~~~~~~~~~~l~~~~~~~~~~f~~~~~~l~ 193 (300)
T 3i32_A 115 RSGRTGRAGRGGRVVLLYGPRERRDVEALERAVGRRFKR-VNPPTPEEVLEAKWRHLLARLARVPEKDYRLYQDFAGRLF 193 (300)
T ss_dssp HHTCCC-----CEEEEEECSSTHHHHHHHHHHHTCCCEE-CCCCCHHHHHHHHHHHHHHHHTTSCHHHHHTTHHHHHHHH
T ss_pred HccCcCcCCCCceEEEEeChHHHHHHHHHHHHhCCcceE-eCCCCHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHH
Confidence 999999997 699999999876 433 67778899999999999999998876666666 367
Q ss_pred CCCCHHHHHHHHHHHHHccc
Q 038192 577 TPPEVTALVEAERCLKALEA 596 (764)
Q Consensus 577 ~pP~~~~i~~ai~~L~~lgA 596 (764)
++|+++.+..|+..|.....
T Consensus 194 ~~~~~e~laaal~~l~~~~~ 213 (300)
T 3i32_A 194 AEGRVEVVAALLALLLGGAP 213 (300)
T ss_dssp HHTCHHHHHHHHHHHHTCCC
T ss_pred hcCcHHHHHHHHHHHhcCCc
Confidence 88999999999999976655
No 52
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=99.83 E-value=1.2e-21 Score=224.50 Aligned_cols=140 Identities=10% Similarity=-0.038 Sum_probs=92.5
Q ss_pred CchhhHHHHHHHHHcCCeEEEEecCCCCccccHHHHHHHhccCCCCCCCCCceEEEecccHHHHHHHHHHHHHHhCCCCC
Q 038192 35 PIVMMEQEIMEAVNDNSAVIICGETGCGKTTQVPQFLFEAGFGSNRCSSRSGRIGVTQPRRVAVLATAKRVAFELGLHLG 114 (764)
Q Consensus 35 Pi~~~~~~Il~~l~~~~vviI~GeTGSGKTTqvPq~Lle~~~~~~~~~~~~~~Ii~tQPRRiaAisvA~RVa~E~g~~lG 114 (764)
....+|.+.++.+.++..++++|+||||||.+.-.++...... + .+++++..|++.+|.+..+++. .++...+
T Consensus 113 ~l~~~Q~~ai~~~~~~~~~ll~~~tGsGKT~~~~~~~~~~~~~-~-----~~~vlvl~P~~~L~~Q~~~~~~-~~~~~~~ 185 (510)
T 2oca_A 113 EPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLEN-Y-----EGKILIIVPTTALTTQMADDFV-DYRLFSH 185 (510)
T ss_dssp CCCHHHHHHHHHHHHHSEEEEECCSTTTHHHHHHHHHHHHHHH-C-----SSEEEEEESSHHHHHHHHHHHH-HTTSSCG
T ss_pred CCCHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHHhC-C-----CCeEEEEECcHHHHHHHHHHHH-HhhcCCc
Confidence 4467777888877777789999999999999876665543221 1 1489999999999999998884 4443333
Q ss_pred CEeeEEeccCccc---CCCceEEEEchHHHHHH----HHH----HHHHHHHHHhhccccCCccCCCCceEEEeecccc
Q 038192 115 KEVGFQVRHDKKI---GDSCSIKFMTDGILLRE----LKA----LYEKQQQLLRSGQCIEPKDRVFPLKLILMSATLR 181 (764)
Q Consensus 115 ~~VGY~ir~e~~~---s~~t~I~f~T~GiLLr~----l~~----i~de~~~~l~~~~~~~~~~~~~~lKlILMSATl~ 181 (764)
..|+.-.+..+.. .....|+++|++.|++. +.. |+||+|+.....+...+....+..++++||||+.
T Consensus 186 ~~v~~~~~~~~~~~~~~~~~~I~i~T~~~l~~~~~~~~~~~~liIiDE~H~~~~~~~~~il~~~~~~~~~l~lSATp~ 263 (510)
T 2oca_A 186 AMIKKIGGGASKDDKYKNDAPVVVGTWQTVVKQPKEWFSQFGMMMNDECHLATGKSISSIISGLNNCMFKFGLSGSLR 263 (510)
T ss_dssp GGEEECGGGCCTTGGGCTTCSEEEEEHHHHTTSCGGGGGGEEEEEEETGGGCCHHHHHHHGGGCTTCCEEEEEESCGG
T ss_pred cceEEEecCCccccccccCCcEEEEeHHHHhhchhhhhhcCCEEEEECCcCCCcccHHHHHHhcccCcEEEEEEeCCC
Confidence 3444333332221 25688999999988876 221 5688876432221111112235678999999993
No 53
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=99.81 E-value=1.1e-19 Score=213.91 Aligned_cols=82 Identities=27% Similarity=0.189 Sum_probs=67.5
Q ss_pred CeEEEecCCCCCHHHHHhhhccCCCCceEEEEecCcccccCCCC--------CeEEEEeCCcccceeeccCCCcccccee
Q 038192 436 ALCVLPLYAMLPAAAQLRVFEDVKEGERLVVVSTNVAETSLTIP--------GIKYVVDTGREKVKKYNSANGIESYEIQ 507 (764)
Q Consensus 436 ~~~i~pLHs~l~~~eQ~~vf~~~~~g~rKVIlsTNIAEtSITIp--------dV~~VID~G~~K~~~yd~~~~~~~l~~~ 507 (764)
++....|||.+...++..+.+.+.+| .|+||||+|.||++|+ ++.+||++.+
T Consensus 456 gi~~~vLhg~~~~rEr~ii~~ag~~g--~VlIATdmAgRG~DI~l~~~V~~~ggl~VIn~d~------------------ 515 (844)
T 1tf5_A 456 GIPHQVLNAKNHEREAQIIEEAGQKG--AVTIATNMAGRGTDIKLGEGVKELGGLAVVGTER------------------ 515 (844)
T ss_dssp TCCCEEECSSCHHHHHHHHTTTTSTT--CEEEEETTSSTTCCCCCCTTSGGGTSEEEEESSC------------------
T ss_pred CCCEEEeeCCccHHHHHHHHHcCCCC--eEEEeCCccccCcCccccchhhhcCCcEEEEecC------------------
Confidence 45677899999888887777766666 5999999999999999 8999998544
Q ss_pred eccHHhHHHhccccCCCCC-CEEEEccCHHH
Q 038192 508 WISKASAAQRAGRAGRTAP-GHCYRLYSSAV 537 (764)
Q Consensus 508 ~iSkasa~QR~GRAGR~~~-G~cyrLys~~~ 537 (764)
|-|...+.||+|||||.|. |.++-++|.++
T Consensus 516 p~s~r~y~hr~GRTGRqG~~G~s~~~vs~eD 546 (844)
T 1tf5_A 516 HESRRIDNQLRGRSGRQGDPGITQFYLSMED 546 (844)
T ss_dssp CSSHHHHHHHHTTSSGGGCCEEEEEEEETTS
T ss_pred CCCHHHHHhhcCccccCCCCCeEEEEecHHH
Confidence 3355667799999999985 99999888654
No 54
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=99.77 E-value=1.6e-18 Score=203.66 Aligned_cols=113 Identities=18% Similarity=0.107 Sum_probs=75.2
Q ss_pred CCchhhHHHHHHHHHcCCeEEEEecCCCCccccHHHHHHHhccCCCCCCCCCceEEEecccHHHHHHHHHHHHHHhCCCC
Q 038192 34 LPIVMMEQEIMEAVNDNSAVIICGETGCGKTTQVPQFLFEAGFGSNRCSSRSGRIGVTQPRRVAVLATAKRVAFELGLHL 113 (764)
Q Consensus 34 LPi~~~~~~Il~~l~~~~vviI~GeTGSGKTTqvPq~Lle~~~~~~~~~~~~~~Ii~tQPRRiaAisvA~RVa~E~g~~l 113 (764)
-|-..+...++-. .+++ |....||||||..+...++...... ..++|.-|+|.+|.++++.+. .++..+
T Consensus 74 ~p~~VQ~~~i~~l-l~G~--Iaem~TGsGKTlaf~LP~l~~~l~g-------~~vlVltPTreLA~Q~~e~~~-~l~~~l 142 (853)
T 2fsf_A 74 RHFDVQLLGGMVL-NERC--IAEMRTGEGKTLTATLPAYLNALTG-------KGVHVVTVNDYLAQRDAENNR-PLFEFL 142 (853)
T ss_dssp CCCHHHHHHHHHH-HSSE--EEECCTTSCHHHHHHHHHHHHHTTS-------SCCEEEESSHHHHHHHHHHHH-HHHHHT
T ss_pred CCChHHHhhcccc-cCCe--eeeecCCchHHHHHHHHHHHHHHcC-------CcEEEEcCCHHHHHHHHHHHH-HHHHhc
Confidence 4555555556544 4555 8899999999988766666544321 356777899999999887543 333445
Q ss_pred CCEeeEEeccCcc----cCCCceEEEEchHHH-HHHHHH-----------------HHHHHHHHHh
Q 038192 114 GKEVGFQVRHDKK----IGDSCSIKFMTDGIL-LRELKA-----------------LYEKQQQLLR 157 (764)
Q Consensus 114 G~~VGY~ir~e~~----~s~~t~I~f~T~GiL-Lr~l~~-----------------i~de~~~~l~ 157 (764)
|-.||.-+...+. ....+.|+|+|||.| ++.|.+ |+||+|++|.
T Consensus 143 gl~v~~i~GG~~~~~r~~~~~~dIvvgTpgrl~fDyLrd~~~~~~~~~~~~~l~~lVlDEaD~mLi 208 (853)
T 2fsf_A 143 GLTVGINLPGMPAPAKREAYAADITYGTNNEYGFDYLRDNMAFSPEERVQRKLHYALVDEVDSILI 208 (853)
T ss_dssp TCCEEECCTTCCHHHHHHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCSCCEEEESCHHHHTT
T ss_pred CCeEEEEeCCCCHHHHHHhcCCCEEEECCchhhHHHHHhhhhccHhHhcccCCcEEEECchHHHHH
Confidence 6666654443221 112478999999999 676642 5699998873
No 55
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=99.75 E-value=6.8e-18 Score=198.55 Aligned_cols=113 Identities=12% Similarity=0.157 Sum_probs=74.7
Q ss_pred CCchhhHHHHHHHHHcCCeEEEEecCCCCccccHHHHHHHhccCCCCCCCCCceEEEecccHHHHHHHHHHHHHHhCCCC
Q 038192 34 LPIVMMEQEIMEAVNDNSAVIICGETGCGKTTQVPQFLFEAGFGSNRCSSRSGRIGVTQPRRVAVLATAKRVAFELGLHL 113 (764)
Q Consensus 34 LPi~~~~~~Il~~l~~~~vviI~GeTGSGKTTqvPq~Lle~~~~~~~~~~~~~~Ii~tQPRRiaAisvA~RVa~E~g~~l 113 (764)
-|-..+...++- +.+++ |..+.||+|||..+...++.+.... ..+.|.-|+|.+|.+.++.+. .+...+
T Consensus 111 rP~~VQ~~~ip~-Ll~G~--Iaem~TGeGKTLa~~LP~~l~aL~g-------~~v~VvTpTreLA~Qdae~m~-~l~~~l 179 (922)
T 1nkt_A 111 RPFDVQVMGAAA-LHLGN--VAEMKTGEGKTLTCVLPAYLNALAG-------NGVHIVTVNDYLAKRDSEWMG-RVHRFL 179 (922)
T ss_dssp CCCHHHHHHHHH-HHTTE--EEECCTTSCHHHHTHHHHHHHHTTT-------SCEEEEESSHHHHHHHHHHHH-HHHHHT
T ss_pred CCCHHHHHHHHh-HhcCC--EEEecCCCccHHHHHHHHHHHHHhC-------CCeEEEeCCHHHHHHHHHHHH-HHHhhc
Confidence 354455555554 44555 8899999999987555554433322 257788899999988887544 334456
Q ss_pred CCEeeEEeccCcc----cCCCceEEEEchHHH-HHHHHH-----------------HHHHHHHHHh
Q 038192 114 GKEVGFQVRHDKK----IGDSCSIKFMTDGIL-LRELKA-----------------LYEKQQQLLR 157 (764)
Q Consensus 114 G~~VGY~ir~e~~----~s~~t~I~f~T~GiL-Lr~l~~-----------------i~de~~~~l~ 157 (764)
|-+||.-+...+. ..-.++|+|+|+|.| ++.|.+ |+||+|++|.
T Consensus 180 GLsv~~i~gg~~~~~r~~~y~~DIvygTpgrlgfDyLrD~m~~~~~~l~lr~l~~lIVDEaDsmLi 245 (922)
T 1nkt_A 180 GLQVGVILATMTPDERRVAYNADITYGTNNEFGFDYLRDNMAHSLDDLVQRGHHYAIVDEVDSILI 245 (922)
T ss_dssp TCCEEECCTTCCHHHHHHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEETTHHHHHT
T ss_pred CCeEEEEeCCCCHHHHHHhcCCCEEEECchHhhHHHHHhhhhccHhhhccCCCCEEEEeChHHHHH
Confidence 6777765543221 112478999999999 666642 5699998874
No 56
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=99.73 E-value=2.3e-18 Score=200.97 Aligned_cols=139 Identities=19% Similarity=0.116 Sum_probs=69.9
Q ss_pred chhhHHHHHHHHHc-----CCeEEEEecCCCCccccHHHHHHH---hccCCCCCCCCCceEEEecccHHHHHHHHHHHHH
Q 038192 36 IVMMEQEIMEAVND-----NSAVIICGETGCGKTTQVPQFLFE---AGFGSNRCSSRSGRIGVTQPRRVAVLATAKRVAF 107 (764)
Q Consensus 36 i~~~~~~Il~~l~~-----~~vviI~GeTGSGKTTqvPq~Lle---~~~~~~~~~~~~~~Ii~tQPRRiaAisvA~RVa~ 107 (764)
...+|.+.++.+.+ ++-++++++||||||.+.-.++.. .++.... .....++++.-||+.++.+...+...
T Consensus 179 lr~~Q~~ai~~~~~~~~~~~~~~ll~~~TGsGKT~~~~~~~~~l~~~~~~~~~-~~~~~~vlil~P~~~L~~Q~~~~~~~ 257 (590)
T 3h1t_A 179 PRYYQQIAINRAVQSVLQGKKRSLITMATGTGKTVVAFQISWKLWSARWNRTG-DYRKPRILFLADRNVLVDDPKDKTFT 257 (590)
T ss_dssp CCHHHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHHHHHHHHHTTCCSSC-SSSCCCEEEEEC-----------CCT
T ss_pred chHHHHHHHHHHHHHHhcCCCceEEEecCCCChHHHHHHHHHHHHhccccccc-ccCCCeEEEEeCCHHHHHHHHHHHHH
Confidence 45566666666543 466788999999999886555433 2221100 01236899999999988887632222
Q ss_pred HhCCCCCCEeeEEeccCcccCCCceEEEEchHHHHHHHH---------------HHHHHHHHHHhhc--cccCCccCCCC
Q 038192 108 ELGLHLGKEVGFQVRHDKKIGDSCSIKFMTDGILLRELK---------------ALYEKQQQLLRSG--QCIEPKDRVFP 170 (764)
Q Consensus 108 E~g~~lG~~VGY~ir~e~~~s~~t~I~f~T~GiLLr~l~---------------~i~de~~~~l~~~--~~~~~~~~~~~ 170 (764)
.+|..++. + .......+.+|+++|++.|.+.+. .|+||+|++...+ ....+....+.
T Consensus 258 ----~~~~~~~~-~-~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~lvIiDEaH~~~~~~~~~~~~il~~~~~ 331 (590)
T 3h1t_A 258 ----PFGDARHK-I-EGGKVVKSREIYFAIYQSIASDERRPGLYKEFPQDFFDLIIIDECHRGSARDNSNWREILEYFEP 331 (590)
T ss_dssp ----TTCSSEEE-C-CC--CCSSCSEEEEEGGGC------CCGGGGSCTTSCSEEEESCCC---------CHHHHHHSTT
T ss_pred ----hcchhhhh-h-hccCCCCCCcEEEEEhhhhccccccccccccCCCCccCEEEEECCccccccchHHHHHHHHhCCc
Confidence 33433332 1 122334567899999999988652 1568888765431 12222223355
Q ss_pred ceEEEeecccc
Q 038192 171 LKLILMSATLR 181 (764)
Q Consensus 171 lKlILMSATl~ 181 (764)
.++|+||||..
T Consensus 332 ~~~l~lTATP~ 342 (590)
T 3h1t_A 332 AFQIGMTATPL 342 (590)
T ss_dssp SEEEEEESSCS
T ss_pred ceEEEeccccc
Confidence 78999999983
No 57
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=99.56 E-value=1.1e-14 Score=143.03 Aligned_cols=90 Identities=18% Similarity=0.252 Sum_probs=72.9
Q ss_pred eEEEecCCCCCHHHHHhhhccCCCCceEEEEecCcccccCCCCCeEEEEeCCcccceeeccCCCccccceeeccHHhHHH
Q 038192 437 LCVLPLYAMLPAAAQLRVFEDVKEGERLVVVSTNVAETSLTIPGIKYVVDTGREKVKKYNSANGIESYEIQWISKASAAQ 516 (764)
Q Consensus 437 ~~i~pLHs~l~~~eQ~~vf~~~~~g~rKVIlsTNIAEtSITIpdV~~VID~G~~K~~~yd~~~~~~~l~~~~iSkasa~Q 516 (764)
+.+..+||+|++.+|.++++.|.+|..+|++||+++++||++|++.+||+.+.+. .- ..+.|.+++.|
T Consensus 59 ~~~~~~~g~~~~~~R~~~~~~f~~g~~~vLvaT~~~~~Gid~~~~~~Vi~~d~p~--------~~----~~~~~~~~~~q 126 (175)
T 2rb4_A 59 HQVSLLSGELTVEQRASIIQRFRDGKEKVLITTNVCARGIDVKQVTIVVNFDLPV--------KQ----GEEPDYETYLH 126 (175)
T ss_dssp CCEEEECSSCCHHHHHHHHHHHHTTSCSEEEECCSCCTTTCCTTEEEEEESSCCC--------------CCSCCHHHHHH
T ss_pred CcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEecchhcCCCcccCCEEEEeCCCC--------Cc----cccCCHHHHHH
Confidence 4578899999999999999999999999999999999999999999999854321 10 12368899999
Q ss_pred hccccCCCC-CCEEEEccCHHHh
Q 038192 517 RAGRAGRTA-PGHCYRLYSSAVF 538 (764)
Q Consensus 517 R~GRAGR~~-~G~cyrLys~~~~ 538 (764)
|+|||||.+ +|.||.+++....
T Consensus 127 r~GR~gR~g~~g~~~~~~~~~~~ 149 (175)
T 2rb4_A 127 RIGRTGRFGKKGLAFNMIEVDEL 149 (175)
T ss_dssp HHCBC----CCEEEEEEECGGGH
T ss_pred HhcccccCCCCceEEEEEccchH
Confidence 999999986 5999999998654
No 58
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=99.53 E-value=2.1e-14 Score=139.39 Aligned_cols=84 Identities=24% Similarity=0.354 Sum_probs=74.9
Q ss_pred eEEEecCCCCCHHHHHhhhccCCCCceEEEEecCcccccCCCCCeEEEEeCCcccceeeccCCCccccceeeccHHhHHH
Q 038192 437 LCVLPLYAMLPAAAQLRVFEDVKEGERLVVVSTNVAETSLTIPGIKYVVDTGREKVKKYNSANGIESYEIQWISKASAAQ 516 (764)
Q Consensus 437 ~~i~pLHs~l~~~eQ~~vf~~~~~g~rKVIlsTNIAEtSITIpdV~~VID~G~~K~~~yd~~~~~~~l~~~~iSkasa~Q 516 (764)
+.+..+||+|++.+|.++++.|..|..+|++||+++++||++|++.+||+ ||+ |.|.+++.|
T Consensus 60 ~~~~~~hg~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gld~~~~~~Vi~--------~~~----------p~~~~~~~q 121 (163)
T 2hjv_A 60 YPCDKIHGGMIQEDRFDVMNEFKRGEYRYLVATDVAARGIDIENISLVIN--------YDL----------PLEKESYVH 121 (163)
T ss_dssp CCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECGGGTTTCCCSCCSEEEE--------SSC----------CSSHHHHHH
T ss_pred CcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEECChhhcCCchhcCCEEEE--------eCC----------CCCHHHHHH
Confidence 34788999999999999999999999999999999999999999999998 443 457788899
Q ss_pred hccccCCCC-CCEEEEccCHHHh
Q 038192 517 RAGRAGRTA-PGHCYRLYSSAVF 538 (764)
Q Consensus 517 R~GRAGR~~-~G~cyrLys~~~~ 538 (764)
|+|||||.+ +|.||.+++....
T Consensus 122 r~GR~~R~g~~g~~~~~~~~~~~ 144 (163)
T 2hjv_A 122 RTGRTGRAGNKGKAISFVTAFEK 144 (163)
T ss_dssp HTTTSSCTTCCEEEEEEECGGGH
T ss_pred hccccCcCCCCceEEEEecHHHH
Confidence 999999996 5999999997654
No 59
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=99.53 E-value=1.4e-14 Score=140.83 Aligned_cols=84 Identities=19% Similarity=0.434 Sum_probs=70.3
Q ss_pred eEEEecCCCCCHHHHHhhhccCCCCceEEEEecCcccccCCCCCeEEEEeCCcccceeeccCCCccccceeeccHHhHHH
Q 038192 437 LCVLPLYAMLPAAAQLRVFEDVKEGERLVVVSTNVAETSLTIPGIKYVVDTGREKVKKYNSANGIESYEIQWISKASAAQ 516 (764)
Q Consensus 437 ~~i~pLHs~l~~~eQ~~vf~~~~~g~rKVIlsTNIAEtSITIpdV~~VID~G~~K~~~yd~~~~~~~l~~~~iSkasa~Q 516 (764)
+.+..+||+|++.+|.++++.|..|..+|++||+++++|+++|++.+||+ ||++ .|.+++.|
T Consensus 55 ~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~G~d~~~~~~Vi~--------~~~p----------~~~~~~~q 116 (165)
T 1fuk_A 55 FTVSAIYSDLPQQERDTIMKEFRSGSSRILISTDLLARGIDVQQVSLVIN--------YDLP----------ANKENYIH 116 (165)
T ss_dssp CCEEEECTTSCHHHHHHHHHHHHTTSCSEEEEEGGGTTTCCCCSCSEEEE--------SSCC----------SSGGGGGG
T ss_pred CCEEEEECCCCHHHHHHHHHHHHcCCCEEEEEcChhhcCCCcccCCEEEE--------eCCC----------CCHHHHHH
Confidence 34788999999999999999999999999999999999999999999998 4433 35566679
Q ss_pred hccccCCCC-CCEEEEccCHHHh
Q 038192 517 RAGRAGRTA-PGHCYRLYSSAVF 538 (764)
Q Consensus 517 R~GRAGR~~-~G~cyrLys~~~~ 538 (764)
|+|||||.+ +|.||.+++....
T Consensus 117 r~GR~gR~g~~g~~~~~~~~~~~ 139 (165)
T 1fuk_A 117 RIGRGGRFGRKGVAINFVTNEDV 139 (165)
T ss_dssp SSCSCC-----CEEEEEEETTTH
T ss_pred HhcccccCCCCceEEEEEcchHH
Confidence 999999996 5999999987543
No 60
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=99.53 E-value=5e-15 Score=181.81 Aligned_cols=84 Identities=12% Similarity=0.076 Sum_probs=71.8
Q ss_pred CeEEEecCCCCCHHHHHhhhccCCCCc--eEEEEecCcccccCCCCCeEEEEeCCcccceeeccCCCccccceeeccHHh
Q 038192 436 ALCVLPLYAMLPAAAQLRVFEDVKEGE--RLVVVSTNVAETSLTIPGIKYVVDTGREKVKKYNSANGIESYEIQWISKAS 513 (764)
Q Consensus 436 ~~~i~pLHs~l~~~eQ~~vf~~~~~g~--rKVIlsTNIAEtSITIpdV~~VID~G~~K~~~yd~~~~~~~l~~~~iSkas 513 (764)
++.+..+||+|++.+|.++++.|.+|. .+|+|||+++++||+||++.+||. ||+.. +.+.
T Consensus 528 g~~~~~lhG~~~~~~R~~~l~~F~~g~~~~~vLvaT~v~~~GlDl~~~~~VI~--------~d~p~----------~~~~ 589 (968)
T 3dmq_A 528 GIRAAVFHEGMSIIERDRAAAWFAEEDTGAQVLLCSEIGSEGRNFQFASHMVM--------FDLPF----------NPDL 589 (968)
T ss_dssp CCCEEEECTTSCTTHHHHHHHHHHSTTSSCEEEECSCCTTCSSCCTTCCEEEC--------SSCCS----------SHHH
T ss_pred CCcEEEEeCCCCHHHHHHHHHHHhCCCCcccEEEecchhhcCCCcccCcEEEE--------ecCCC----------CHHH
Confidence 466899999999999999999999997 999999999999999999999996 66543 4567
Q ss_pred HHHhccccCCCCC-C--EEEEccCHHH
Q 038192 514 AAQRAGRAGRTAP-G--HCYRLYSSAV 537 (764)
Q Consensus 514 a~QR~GRAGR~~~-G--~cyrLys~~~ 537 (764)
+.||.||+||.+. | +.|+++.+..
T Consensus 590 ~~Q~~GR~~R~Gq~~~v~v~~~~~~~t 616 (968)
T 3dmq_A 590 LEQRIGRLDRIGQAHDIQIHVPYLEKT 616 (968)
T ss_dssp HHHHHHTTSCSSSCSCCEEEEEEETTS
T ss_pred HHHHhhccccCCCCceEEEEEecCCCh
Confidence 7799999999876 4 5777776643
No 61
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=99.52 E-value=2.9e-14 Score=146.34 Aligned_cols=167 Identities=18% Similarity=0.208 Sum_probs=114.6
Q ss_pred CCchhhHHHHHHHHHcCCeEEEEecCCCCccccHHHHHHHhccCCCCCCCCCceEEEecccHHHHHHHHHHHHHHhCCCC
Q 038192 34 LPIVMMEQEIMEAVNDNSAVIICGETGCGKTTQVPQFLFEAGFGSNRCSSRSGRIGVTQPRRVAVLATAKRVAFELGLHL 113 (764)
Q Consensus 34 LPi~~~~~~Il~~l~~~~vviI~GeTGSGKTTqvPq~Lle~~~~~~~~~~~~~~Ii~tQPRRiaAisvA~RVa~E~g~~l 113 (764)
-..+.+|.+++.++.+++.++++++||||||+++..++++.............++++..|+|.+|.++++++. +++...
T Consensus 46 ~~~~~~Q~~~i~~~~~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~-~~~~~~ 124 (236)
T 2pl3_A 46 RLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPVLEALYRLQWTSTDGLGVLIISPTRELAYQTFEVLR-KVGKNH 124 (236)
T ss_dssp CBCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHTTCCGGGCCCEEEECSSHHHHHHHHHHHH-HHTTTS
T ss_pred CCCCHHHHHHHHHHhCCCCEEEEeCCCCcHHHHHHHHHHHHHHhhcccccCCceEEEEeCCHHHHHHHHHHHH-HHhCCC
Confidence 3456788888899988888999999999999987776665432111000112579999999999999998665 555555
Q ss_pred CCEeeEEeccCcc-----cCCCceEEEEchHHHHHHHHH------------HHHHHHHHHhhccccCC----ccCCCCce
Q 038192 114 GKEVGFQVRHDKK-----IGDSCSIKFMTDGILLRELKA------------LYEKQQQLLRSGQCIEP----KDRVFPLK 172 (764)
Q Consensus 114 G~~VGY~ir~e~~-----~s~~t~I~f~T~GiLLr~l~~------------i~de~~~~l~~~~~~~~----~~~~~~lK 172 (764)
|..++.-....+. .-.+++|+|+|+|.|++.+.. |+||+|.++..++...+ ....++.+
T Consensus 125 ~~~~~~~~g~~~~~~~~~~~~~~~iiv~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~i~~~~~~~~~ 204 (236)
T 2pl3_A 125 DFSAGLIIGGKDLKHEAERINNINILVCTPGRLLQHMDETVSFHATDLQMLVLDEADRILDMGFADTMNAVIENLPKKRQ 204 (236)
T ss_dssp SCCEEEECCC--CHHHHHHHTTCSEEEECHHHHHHHHHHCSSCCCTTCCEEEETTHHHHHHTTTHHHHHHHHHTSCTTSE
T ss_pred CeeEEEEECCCCHHHHHHhCCCCCEEEECHHHHHHHHHhcCCcccccccEEEEeChHHHhcCCcHHHHHHHHHhCCCCCe
Confidence 5556554443321 114678999999999998853 56999987765542111 11235788
Q ss_pred EEEeecccc--hhhhccccCCCCCCCeeeeCCc
Q 038192 173 LILMSATLR--VEDFISGGRLFRNPPIIEVPTR 203 (764)
Q Consensus 173 lILMSATl~--~~~f~~~~~~f~~~~vi~i~gr 203 (764)
+|+||||+. .+.+.. .++.++..|.+.++
T Consensus 205 ~l~~SAT~~~~~~~~~~--~~~~~p~~i~~~~~ 235 (236)
T 2pl3_A 205 TLLFSATQTKSVKDLAR--LSLKNPEYVWVHEK 235 (236)
T ss_dssp EEEEESSCCHHHHHHHH--HSCSSCEEEECCC-
T ss_pred EEEEEeeCCHHHHHHHH--HhCCCCEEEEeCCC
Confidence 999999994 455554 67777777777654
No 62
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=99.52 E-value=2e-14 Score=149.35 Aligned_cols=159 Identities=21% Similarity=0.205 Sum_probs=114.1
Q ss_pred CchhhHHHHHHHHHcCCeEEEEecCCCCccccHHHHHHHhccCCCCCCCCCceEEEecccHHHHHHHHHHHHHHhCCCCC
Q 038192 35 PIVMMEQEIMEAVNDNSAVIICGETGCGKTTQVPQFLFEAGFGSNRCSSRSGRIGVTQPRRVAVLATAKRVAFELGLHLG 114 (764)
Q Consensus 35 Pi~~~~~~Il~~l~~~~vviI~GeTGSGKTTqvPq~Lle~~~~~~~~~~~~~~Ii~tQPRRiaAisvA~RVa~E~g~~lG 114 (764)
..+.+|.+++..+.+++.++++++||||||+++..++++....... ..+++|+.|+|.+|.++++++.. .+...|
T Consensus 65 ~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~il~~l~~~~~----~~~~lil~Ptr~L~~q~~~~~~~-~~~~~~ 139 (249)
T 3ber_A 65 KPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNALLETPQ----RLFALVLTPTRELAFQISEQFEA-LGSSIG 139 (249)
T ss_dssp SCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHSCC----SSCEEEECSSHHHHHHHHHHHHH-HHGGGT
T ss_pred CCCHHHHHHHHHHhCCCCEEEEcCCCCCchhHhHHHHHHHHhcCCC----CceEEEEeCCHHHHHHHHHHHHH-HhccCC
Confidence 5578888899999998889999999999999988888875433221 25799999999999999987754 333345
Q ss_pred CEeeEEeccCcc------cCCCceEEEEchHHHHHHHHH------------HHHHHHHHHhhccccCC----ccCCCCce
Q 038192 115 KEVGFQVRHDKK------IGDSCSIKFMTDGILLRELKA------------LYEKQQQLLRSGQCIEP----KDRVFPLK 172 (764)
Q Consensus 115 ~~VGY~ir~e~~------~s~~t~I~f~T~GiLLr~l~~------------i~de~~~~l~~~~~~~~----~~~~~~lK 172 (764)
..++.-....+. ...+++|+|+|+|.|++.+.. |+||+|+++..++...+ ....++.+
T Consensus 140 ~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~l~~~~~lViDEah~l~~~~~~~~l~~i~~~~~~~~~ 219 (249)
T 3ber_A 140 VQSAVIVGGIDSMSQSLALAKKPHIIIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRK 219 (249)
T ss_dssp CCEEEECTTSCHHHHHHHHHTCCSEEEECHHHHHHHHHHSTTCCCTTCCEEEECSHHHHHHTTCHHHHHHHHHSSCSSSE
T ss_pred eeEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCCCcCccccCEEEEcChhhhhccChHHHHHHHHHhCCCCCe
Confidence 555554443321 135689999999999998853 56999987776542211 12235789
Q ss_pred EEEeecccc--hhhhccccCCCCCCCeeee
Q 038192 173 LILMSATLR--VEDFISGGRLFRNPPIIEV 200 (764)
Q Consensus 173 lILMSATl~--~~~f~~~~~~f~~~~vi~i 200 (764)
+++||||++ ...+.+ .|++++..|.+
T Consensus 220 ~l~~SAT~~~~v~~~~~--~~l~~p~~i~v 247 (249)
T 3ber_A 220 TFLFSATMTKKVQKLQR--AALKNPVKCAV 247 (249)
T ss_dssp EEEEESSCCHHHHHHHH--HHCSSCEEEEC
T ss_pred EEEEeccCCHHHHHHHH--HHCCCCEEEEe
Confidence 999999995 445554 57777666654
No 63
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=99.51 E-value=2.9e-14 Score=144.90 Aligned_cols=166 Identities=18% Similarity=0.193 Sum_probs=110.7
Q ss_pred CchhhHHHHHHHHHcCCeEEEEecCCCCccccHHHHHHHhccCCCCCCCCCceEEEecccHHHHHHHHHHHHHHhCCCCC
Q 038192 35 PIVMMEQEIMEAVNDNSAVIICGETGCGKTTQVPQFLFEAGFGSNRCSSRSGRIGVTQPRRVAVLATAKRVAFELGLHLG 114 (764)
Q Consensus 35 Pi~~~~~~Il~~l~~~~vviI~GeTGSGKTTqvPq~Lle~~~~~~~~~~~~~~Ii~tQPRRiaAisvA~RVa~E~g~~lG 114 (764)
..+.+|.+++..+.+++.++++++||||||..+...+++...... ...++++..|+|.+|.++++++.. .+...|
T Consensus 36 ~~~~~Q~~~i~~~~~~~~~lv~~pTGsGKT~~~~~~~l~~l~~~~----~~~~~lil~Pt~~L~~q~~~~~~~-~~~~~~ 110 (224)
T 1qde_A 36 EPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTSV----KAPQALMLAPTRELALQIQKVVMA-LAFHMD 110 (224)
T ss_dssp SCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCTTC----CSCCEEEECSSHHHHHHHHHHHHH-HTTTSC
T ss_pred CCcHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHhccC----CCceEEEEECCHHHHHHHHHHHHH-HhcccC
Confidence 356778888888888888999999999999987777777543322 135899999999999999887754 443444
Q ss_pred CEeeEEeccCcc-----cCCCceEEEEchHHHHHHHHH-----------HHHHHHHHHhhccccCC----ccCCCCceEE
Q 038192 115 KEVGFQVRHDKK-----IGDSCSIKFMTDGILLRELKA-----------LYEKQQQLLRSGQCIEP----KDRVFPLKLI 174 (764)
Q Consensus 115 ~~VGY~ir~e~~-----~s~~t~I~f~T~GiLLr~l~~-----------i~de~~~~l~~~~~~~~----~~~~~~lKlI 174 (764)
..++......+. .-.+++|+++|+|.|++.+.. |+||+|.+...++...+ ....++.++|
T Consensus 111 ~~~~~~~g~~~~~~~~~~~~~~~iiv~Tp~~l~~~~~~~~~~~~~~~~iViDEah~~~~~~~~~~l~~i~~~~~~~~~~i 190 (224)
T 1qde_A 111 IKVHACIGGTSFVEDAEGLRDAQIVVGTPGRVFDNIQRRRFRTDKIKMFILDEADEMLSSGFKEQIYQIFTLLPPTTQVV 190 (224)
T ss_dssp CCEEEECC----------CTTCSEEEECHHHHHHHHHTTSSCCTTCCEEEEETHHHHHHTTCHHHHHHHHHHSCTTCEEE
T ss_pred ceEEEEeCCcchHHHHhcCCCCCEEEECHHHHHHHHHhCCcchhhCcEEEEcChhHHhhhhhHHHHHHHHHhCCccCeEE
Confidence 444433322221 113489999999999998853 56999987665542211 1223678999
Q ss_pred Eeecccch--hhhccccCCCCCCCeeeeCCcccce
Q 038192 175 LMSATLRV--EDFISGGRLFRNPPIIEVPTRQFPV 207 (764)
Q Consensus 175 LMSATl~~--~~f~~~~~~f~~~~vi~i~gr~~pV 207 (764)
+||||+.. ..+.+ +|++++..|.++++.+++
T Consensus 191 ~lSAT~~~~~~~~~~--~~~~~p~~i~~~~~~~~~ 223 (224)
T 1qde_A 191 LLSATMPNDVLEVTT--KFMRNPVRILVKKDELTL 223 (224)
T ss_dssp EEESSCCHHHHHHHH--HHCSSCEEEC--------
T ss_pred EEEeecCHHHHHHHH--HHCCCCEEEEecCCccCC
Confidence 99999954 45554 688888778877765543
No 64
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=99.49 E-value=7.2e-14 Score=149.37 Aligned_cols=157 Identities=18% Similarity=0.222 Sum_probs=111.4
Q ss_pred hhHHHHHHHHHcC--CeEEEEecCCCCccccHHHHHHHhccCCCCCCCCCceEEEecccHHHHHHHHHHHHHHhCCC-CC
Q 038192 38 MMEQEIMEAVNDN--SAVIICGETGCGKTTQVPQFLFEAGFGSNRCSSRSGRIGVTQPRRVAVLATAKRVAFELGLH-LG 114 (764)
Q Consensus 38 ~~~~~Il~~l~~~--~vviI~GeTGSGKTTqvPq~Lle~~~~~~~~~~~~~~Ii~tQPRRiaAisvA~RVa~E~g~~-lG 114 (764)
..|.+.+..+..+ +.++++|+||||||..+...+++....... ..+++|..|+|.+|.++++++. .++.. -+
T Consensus 117 ~iQ~~ai~~il~~~~~~~l~~a~TGsGKT~a~~lp~l~~l~~~~~----~~~~lil~PtreLa~Q~~~~~~-~l~~~~~~ 191 (300)
T 3fmo_B 117 KIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANK----YPQCLCLSPTYELALQTGKVIE-QMGKFYPE 191 (300)
T ss_dssp HHHHHHHHHHTSSSCCCEEEECCTTSSHHHHHHHHHHHHCCTTSC----SCCEEEECSSHHHHHHHHHHHH-HHTTTSTT
T ss_pred HHHHHHHHHHHcCCCCeEEEECCCCCCccHHHHHHHHHhhhccCC----CceEEEEcCcHHHHHHHHHHHH-HHHhhCCC
Confidence 4466666777665 789999999999999887777776543221 2578999999999999988664 44443 35
Q ss_pred CEeeEEeccCccc---CCCceEEEEchHHHHHHHHH------------HHHHHHHHHh-hcccc---CC-ccCCCCceEE
Q 038192 115 KEVGFQVRHDKKI---GDSCSIKFMTDGILLRELKA------------LYEKQQQLLR-SGQCI---EP-KDRVFPLKLI 174 (764)
Q Consensus 115 ~~VGY~ir~e~~~---s~~t~I~f~T~GiLLr~l~~------------i~de~~~~l~-~~~~~---~~-~~~~~~lKlI 174 (764)
..+++.++..... ....+|+++|||+|++.+.. |+||+|+++. .++.. .+ ....++.++|
T Consensus 192 ~~~~~~~~~~~~~~~~~~~~~IlV~TP~~l~~~l~~~~~~~l~~l~~lVlDEad~l~~~~~~~~~~~~i~~~~~~~~q~i 271 (300)
T 3fmo_B 192 LKLAYAVRGNKLERGQKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLPRNCQML 271 (300)
T ss_dssp CCEEEESTTCCCCTTCCCCCSEEEECHHHHHHHHTTTCCCCGGGCSEEEETTHHHHHHSTTHHHHHHHHHTTSCTTCEEE
T ss_pred cEEEEEeCCccHhhhhcCCCCEEEECHHHHHHHHHhcCCCChhhceEEEEeCHHHHhhccCcHHHHHHHHHhCCCCCEEE
Confidence 5677776655432 34578999999999998832 6799999886 34321 11 1223578999
Q ss_pred Eeecccc--hhhhccccCCCCCCCeeeeC
Q 038192 175 LMSATLR--VEDFISGGRLFRNPPIIEVP 201 (764)
Q Consensus 175 LMSATl~--~~~f~~~~~~f~~~~vi~i~ 201 (764)
+||||+. +..|+. .|+.++.+|.+.
T Consensus 272 ~~SAT~~~~v~~~a~--~~l~~p~~i~~~ 298 (300)
T 3fmo_B 272 LFSATFEDSVWKFAQ--KVVPDPNVIKLK 298 (300)
T ss_dssp EEESCCCHHHHHHHH--HHSSSCEEEEEC
T ss_pred EEeccCCHHHHHHHH--HHCCCCeEEEec
Confidence 9999994 556665 677777666654
No 65
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=99.49 E-value=5.1e-14 Score=138.08 Aligned_cols=82 Identities=20% Similarity=0.330 Sum_probs=73.3
Q ss_pred eEEEecCCCCCHHHHHhhhccCCCCceEEEEecCcccccCCCCCeEEEEeCCcccceeeccCCCccccceeeccHHhHHH
Q 038192 437 LCVLPLYAMLPAAAQLRVFEDVKEGERLVVVSTNVAETSLTIPGIKYVVDTGREKVKKYNSANGIESYEIQWISKASAAQ 516 (764)
Q Consensus 437 ~~i~pLHs~l~~~eQ~~vf~~~~~g~rKVIlsTNIAEtSITIpdV~~VID~G~~K~~~yd~~~~~~~l~~~~iSkasa~Q 516 (764)
+.+..+||+|++.+|.++++.|.+|..+|++||+++++||++|++.+||+ ||+ |.|.+++.|
T Consensus 56 ~~~~~~hg~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldi~~~~~Vi~--------~d~----------p~~~~~~~q 117 (172)
T 1t5i_A 56 FPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAFN--------YDM----------PEDSDTYLH 117 (172)
T ss_dssp CCEEEECTTSCHHHHHHHHHHHHTTSCSEEEESSCCSTTCCGGGCSEEEE--------SSC----------CSSHHHHHH
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCCcEEEECCchhcCcchhhCCEEEE--------ECC----------CCCHHHHHH
Confidence 34778999999999999999999999999999999999999999999997 553 346788889
Q ss_pred hccccCCCCC-CEEEEccCHH
Q 038192 517 RAGRAGRTAP-GHCYRLYSSA 536 (764)
Q Consensus 517 R~GRAGR~~~-G~cyrLys~~ 536 (764)
|+|||||.+. |.|+.+++..
T Consensus 118 r~GR~~R~g~~g~~~~~~~~~ 138 (172)
T 1t5i_A 118 RVARAGRFGTKGLAITFVSDE 138 (172)
T ss_dssp HHHHHTGGGCCCEEEEEECSH
T ss_pred HhcccccCCCCcEEEEEEcCh
Confidence 9999999974 9999999864
No 66
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=99.48 E-value=5.1e-14 Score=139.78 Aligned_cols=84 Identities=18% Similarity=0.323 Sum_probs=61.2
Q ss_pred eEEEecCCCCCHHHHHhhhccCCCCceEEEEecCcccccCCCCCeEEEEeCCcccceeeccCCCccccceeeccHHhHHH
Q 038192 437 LCVLPLYAMLPAAAQLRVFEDVKEGERLVVVSTNVAETSLTIPGIKYVVDTGREKVKKYNSANGIESYEIQWISKASAAQ 516 (764)
Q Consensus 437 ~~i~pLHs~l~~~eQ~~vf~~~~~g~rKVIlsTNIAEtSITIpdV~~VID~G~~K~~~yd~~~~~~~l~~~~iSkasa~Q 516 (764)
+.+..+||++++.+|.++++.|..|..+|++||+++++||++|++.+||+ ||++ .|.+++.|
T Consensus 71 ~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldi~~~~~VI~--------~d~p----------~s~~~~~Q 132 (185)
T 2jgn_A 71 YACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARGLDISNVKHVIN--------FDLP----------SDIEEYVH 132 (185)
T ss_dssp CCEEEEC--------CHHHHHHHHTSSSEEEEEC------CCCSBSEEEE--------SSCC----------SSHHHHHH
T ss_pred CceEEEeCCCCHHHHHHHHHHHHcCCCeEEEEcChhhcCCCcccCCEEEE--------eCCC----------CCHHHHHH
Confidence 45788999999999999999999999999999999999999999999997 5533 46778889
Q ss_pred hccccCCCC-CCEEEEccCHHHh
Q 038192 517 RAGRAGRTA-PGHCYRLYSSAVF 538 (764)
Q Consensus 517 R~GRAGR~~-~G~cyrLys~~~~ 538 (764)
|+|||||.+ +|.|+.+++....
T Consensus 133 r~GR~~R~g~~g~~~~~~~~~~~ 155 (185)
T 2jgn_A 133 RIGRTGRVGNLGLATSFFNERNI 155 (185)
T ss_dssp HHTTBCCTTSCEEEEEEECGGGG
T ss_pred HccccCCCCCCcEEEEEEchhhH
Confidence 999999997 5999999998654
No 67
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=99.47 E-value=4.7e-14 Score=140.84 Aligned_cols=82 Identities=23% Similarity=0.370 Sum_probs=71.5
Q ss_pred eEEEecCCCCCHHHHHhhhccCCCCceEEEEecCcccccCCCCCeEEEEeCCcccceeeccCCCccccceeeccHHhHHH
Q 038192 437 LCVLPLYAMLPAAAQLRVFEDVKEGERLVVVSTNVAETSLTIPGIKYVVDTGREKVKKYNSANGIESYEIQWISKASAAQ 516 (764)
Q Consensus 437 ~~i~pLHs~l~~~eQ~~vf~~~~~g~rKVIlsTNIAEtSITIpdV~~VID~G~~K~~~yd~~~~~~~l~~~~iSkasa~Q 516 (764)
+.+..+||++++.+|.++++.|..|..+|+|||+++++||+||+|.+||+ ||+ |.|.+++.|
T Consensus 79 ~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~~~~~Gldi~~v~~VI~--------~d~----------p~~~~~~~q 140 (191)
T 2p6n_A 79 VEAVAIHGGKDQEERTKAIEAFREGKKDVLVATDVASKGLDFPAIQHVIN--------YDM----------PEEIENYVH 140 (191)
T ss_dssp CCEEEECTTSCHHHHHHHHHHHHHTSCSEEEECHHHHTTCCCCCCSEEEE--------SSC----------CSSHHHHHH
T ss_pred CcEEEEeCCCCHHHHHHHHHHHhcCCCEEEEEcCchhcCCCcccCCEEEE--------eCC----------CCCHHHHHH
Confidence 34778999999999999999999999999999999999999999999998 553 346778889
Q ss_pred hccccCCCC-CCEEEEccCHH
Q 038192 517 RAGRAGRTA-PGHCYRLYSSA 536 (764)
Q Consensus 517 R~GRAGR~~-~G~cyrLys~~ 536 (764)
|.|||||.+ +|.|+.+++..
T Consensus 141 r~GR~gR~g~~g~~i~l~~~~ 161 (191)
T 2p6n_A 141 RIGRTGCSGNTGIATTFINKA 161 (191)
T ss_dssp HHTTSCC---CCEEEEEECTT
T ss_pred HhCccccCCCCcEEEEEEcCc
Confidence 999999997 59999999864
No 68
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=99.47 E-value=8e-14 Score=143.84 Aligned_cols=162 Identities=15% Similarity=0.156 Sum_probs=112.0
Q ss_pred chhhHHHHHHHHHcCCeEEEEecCCCCccccHHHHHHHhccCCCCCCCCCceEEEecccHHHHHHHHHHHHHHhCCCCCC
Q 038192 36 IVMMEQEIMEAVNDNSAVIICGETGCGKTTQVPQFLFEAGFGSNRCSSRSGRIGVTQPRRVAVLATAKRVAFELGLHLGK 115 (764)
Q Consensus 36 i~~~~~~Il~~l~~~~vviI~GeTGSGKTTqvPq~Lle~~~~~~~~~~~~~~Ii~tQPRRiaAisvA~RVa~E~g~~lG~ 115 (764)
.+.+|.+.++++.+++.++++++||||||.....++++....... ...++++..|+|.+|.++++++. +++...|.
T Consensus 52 ~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~---~~~~~lil~Pt~~L~~q~~~~~~-~~~~~~~~ 127 (245)
T 3dkp_A 52 PTPIQMQAIPVMLHGRELLASAPTGSGKTLAFSIPILMQLKQPAN---KGFRALIISPTRELASQIHRELI-KISEGTGF 127 (245)
T ss_dssp CCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHCSCCS---SSCCEEEECSSHHHHHHHHHHHH-HHTTTSCC
T ss_pred CCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHhhccc---CCceEEEEeCCHHHHHHHHHHHH-HHhcccCc
Confidence 566777888888888889999999999999866666665432111 12579999999999999988665 44444554
Q ss_pred EeeEEe-------ccCcccCCCceEEEEchHHHHHHHHH-------------HHHHHHHHHhh---ccccCCc-----cC
Q 038192 116 EVGFQV-------RHDKKIGDSCSIKFMTDGILLRELKA-------------LYEKQQQLLRS---GQCIEPK-----DR 167 (764)
Q Consensus 116 ~VGY~i-------r~e~~~s~~t~I~f~T~GiLLr~l~~-------------i~de~~~~l~~---~~~~~~~-----~~ 167 (764)
.++... ++......+++|+++|+|+|++.+.. |+||+|.++.. ++...+. ..
T Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~~~~i~~~~~ 207 (245)
T 3dkp_A 128 RIHMIHKAAVAAKKFGPKSSKKFDILVTTPNRLIYLLKQDPPGIDLASVEWLVVDESDKLFEDGKTGFRDQLASIFLACT 207 (245)
T ss_dssp CEECCCHHHHHHTTTSTTSCCCCCEEEECHHHHHHHHHSSSCSCCCTTCCEEEESSHHHHHHHC--CHHHHHHHHHHHCC
T ss_pred eEEEEecCccHHHHhhhhhcCCCCEEEECHHHHHHHHHhCCCCcccccCcEEEEeChHHhcccccccHHHHHHHHHHhcC
Confidence 443322 22233356789999999999998842 56999987763 3322111 12
Q ss_pred CCCceEEEeeccc--chhhhccccCCCCCCCeeeeCCc
Q 038192 168 VFPLKLILMSATL--RVEDFISGGRLFRNPPIIEVPTR 203 (764)
Q Consensus 168 ~~~lKlILMSATl--~~~~f~~~~~~f~~~~vi~i~gr 203 (764)
.++.++++||||+ +.+.+.. .+++++..|.+.++
T Consensus 208 ~~~~~~~~~SAT~~~~v~~~~~--~~l~~p~~i~~~~~ 243 (245)
T 3dkp_A 208 SHKVRRAMFSATFAYDVEQWCK--LNLDNVISVSIGAR 243 (245)
T ss_dssp CTTCEEEEEESSCCHHHHHHHH--HHSSSCEEEEECC-
T ss_pred CCCcEEEEEeccCCHHHHHHHH--HhCCCCEEEEeCCC
Confidence 3578999999999 4556664 57777777777654
No 69
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=99.46 E-value=6.3e-14 Score=144.28 Aligned_cols=158 Identities=18% Similarity=0.208 Sum_probs=108.7
Q ss_pred chhhHHHHHHHHHcCCeEEEEecCCCCccccHHHHHHHhccCCCCCCCCCceEEEecccHHHHHHHHHHHHHHhCCCCCC
Q 038192 36 IVMMEQEIMEAVNDNSAVIICGETGCGKTTQVPQFLFEAGFGSNRCSSRSGRIGVTQPRRVAVLATAKRVAFELGLHLGK 115 (764)
Q Consensus 36 i~~~~~~Il~~l~~~~vviI~GeTGSGKTTqvPq~Lle~~~~~~~~~~~~~~Ii~tQPRRiaAisvA~RVa~E~g~~lG~ 115 (764)
.+.+|.+.+..+.+++.++++|+||||||..+...+++...... ...++++..|+|.+|.++++++. .++...|.
T Consensus 53 ~~~~Q~~ai~~i~~~~~~li~apTGsGKT~~~~l~~l~~l~~~~----~~~~~lil~Pt~~L~~q~~~~~~-~~~~~~~~ 127 (237)
T 3bor_A 53 PSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQQLEIEF----KETQALVLAPTRELAQQIQKVIL-ALGDYMGA 127 (237)
T ss_dssp CCHHHHHHHHHHHTTCCEEECCCSSHHHHHHHHHHHHHHCCTTS----CSCCEEEECSSHHHHHHHHHHHH-HHTTTTTC
T ss_pred CCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHhcC----CCceEEEEECcHHHHHHHHHHHH-HHhhhcCc
Confidence 45677777888888878999999999999998888887653221 12589999999999999988665 45555555
Q ss_pred EeeEEeccCcc------c-CCCceEEEEchHHHHHHHHH-----------HHHHHHHHHhhccccCC----ccCCCCceE
Q 038192 116 EVGFQVRHDKK------I-GDSCSIKFMTDGILLRELKA-----------LYEKQQQLLRSGQCIEP----KDRVFPLKL 173 (764)
Q Consensus 116 ~VGY~ir~e~~------~-s~~t~I~f~T~GiLLr~l~~-----------i~de~~~~l~~~~~~~~----~~~~~~lKl 173 (764)
.++..+...+. . ....+|+++|+|.|++.+.. |+||+|+++..++...+ ....++.++
T Consensus 128 ~~~~~~g~~~~~~~~~~l~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~lViDEah~~~~~~~~~~l~~i~~~~~~~~~~ 207 (237)
T 3bor_A 128 TCHACIGGTNVRNEMQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKWIKMFVLDEADEMLSRGFKDQIYEIFQKLNTSIQV 207 (237)
T ss_dssp CEEEECC-------------CCCSEEEECHHHHHHHHHTTSSCSTTCCEEEEESHHHHHHTTCHHHHHHHHHHSCTTCEE
T ss_pred eEEEEECCCchHHHHHHHhcCCCCEEEECHHHHHHHHHhCCcCcccCcEEEECCchHhhccCcHHHHHHHHHhCCCCCeE
Confidence 55443333221 1 22378999999999998853 67999987766542211 122357899
Q ss_pred EEeecccc--hhhhccccCCCCCCCeeee
Q 038192 174 ILMSATLR--VEDFISGGRLFRNPPIIEV 200 (764)
Q Consensus 174 ILMSATl~--~~~f~~~~~~f~~~~vi~i 200 (764)
|+||||+. ...+.. .|++++..|.+
T Consensus 208 i~~SAT~~~~~~~~~~--~~l~~p~~i~v 234 (237)
T 3bor_A 208 VLLSATMPTDVLEVTK--KFMRDPIRILV 234 (237)
T ss_dssp EEECSSCCHHHHHHHH--HHCSSCEEEC-
T ss_pred EEEEEecCHHHHHHHH--HHCCCCEEEEe
Confidence 99999994 445554 56766655544
No 70
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=99.45 E-value=8.4e-14 Score=164.38 Aligned_cols=86 Identities=26% Similarity=0.266 Sum_probs=75.1
Q ss_pred EEEecCCCCCHHHHHhhhccCCCCceEEEEecCcccccCCCCCeEEEEeCCcccceeeccCCCccccceeeccHHhHHHh
Q 038192 438 CVLPLYAMLPAAAQLRVFEDVKEGERLVVVSTNVAETSLTIPGIKYVVDTGREKVKKYNSANGIESYEIQWISKASAAQR 517 (764)
Q Consensus 438 ~i~pLHs~l~~~eQ~~vf~~~~~g~rKVIlsTNIAEtSITIpdV~~VID~G~~K~~~yd~~~~~~~l~~~~iSkasa~QR 517 (764)
.+..+||++++.+|.++++.++.|..+|++|||++++|++||+|.+||+++..+. + .+.|..++.||
T Consensus 465 ~~~~lh~~~~~~~R~~~~~~f~~g~~~VLvaT~~l~~GlDip~v~lVI~~d~d~~-------G------~p~s~~~~iQr 531 (664)
T 1c4o_A 465 RARYLHHELDAFKRQALIRDLRLGHYDCLVGINLLREGLDIPEVSLVAILDADKE-------G------FLRSERSLIQT 531 (664)
T ss_dssp CEEEECTTCCHHHHHHHHHHHHTTSCSEEEESCCCCTTCCCTTEEEEEETTTTSC-------S------GGGSHHHHHHH
T ss_pred CceeecCCCCHHHHHHHHHHhhcCCceEEEccChhhcCccCCCCCEEEEeCCccc-------C------CCCCHHHHHHH
Confidence 4667899999999999999999999999999999999999999999998654322 1 15578899999
Q ss_pred ccccCCCCCCEEEEccCHH
Q 038192 518 AGRAGRTAPGHCYRLYSSA 536 (764)
Q Consensus 518 ~GRAGR~~~G~cyrLys~~ 536 (764)
+|||||.++|.|+.+++..
T Consensus 532 ~GRagR~~~G~~i~~~~~~ 550 (664)
T 1c4o_A 532 IGRAARNARGEVWLYADRV 550 (664)
T ss_dssp HGGGTTSTTCEEEEECSSC
T ss_pred HCccCcCCCCEEEEEEcCC
Confidence 9999999999999999764
No 71
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=99.45 E-value=1.8e-13 Score=139.63 Aligned_cols=160 Identities=16% Similarity=0.086 Sum_probs=103.5
Q ss_pred chhhHHHHHHHHHcCCeEEEEecCCCCccccHHHHHHHhccCCC--CCCCCCceEEEecccHHHHHHHHHHHHHHhCCCC
Q 038192 36 IVMMEQEIMEAVNDNSAVIICGETGCGKTTQVPQFLFEAGFGSN--RCSSRSGRIGVTQPRRVAVLATAKRVAFELGLHL 113 (764)
Q Consensus 36 i~~~~~~Il~~l~~~~vviI~GeTGSGKTTqvPq~Lle~~~~~~--~~~~~~~~Ii~tQPRRiaAisvA~RVa~E~g~~l 113 (764)
-+.+|.+.+..+.+++.++++++||||||...-..++....... .......++++..|+|.+|.++++++..... .
T Consensus 43 ~~~~Q~~~i~~~~~~~~~l~~apTGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~--~ 120 (228)
T 3iuy_A 43 PTPIQSQAWPIILQGIDLIVVAQTGTGKTLSYLMPGFIHLDSQPISREQRNGPGMLVLTPTRELALHVEAECSKYSY--K 120 (228)
T ss_dssp CCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHC---------CCCSEEEECSSHHHHHHHHHHHHHHCC--T
T ss_pred CCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhccchhhccCCCcEEEEeCCHHHHHHHHHHHHHhcc--c
Confidence 35667777788888888999999999999865544444322110 0001235789999999999999998876532 2
Q ss_pred CCEeeEEeccCcc------cCCCceEEEEchHHHHHHHHH-----------HHHHHHHHHhhccccCC----ccCCCCce
Q 038192 114 GKEVGFQVRHDKK------IGDSCSIKFMTDGILLRELKA-----------LYEKQQQLLRSGQCIEP----KDRVFPLK 172 (764)
Q Consensus 114 G~~VGY~ir~e~~------~s~~t~I~f~T~GiLLr~l~~-----------i~de~~~~l~~~~~~~~----~~~~~~lK 172 (764)
|..++......+. ...+.+|+|+|+|.|++.+.. |+||+|+++..++...+ ....++.+
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~iiv~Tp~~l~~~~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~i~~~~~~~~~ 200 (228)
T 3iuy_A 121 GLKSICIYGGRNRNGQIEDISKGVDIIIATPGRLNDLQMNNSVNLRSITYLVIDEADKMLDMEFEPQIRKILLDVRPDRQ 200 (228)
T ss_dssp TCCEEEECC------CHHHHHSCCSEEEECHHHHHHHHHTTCCCCTTCCEEEECCHHHHHHTTCHHHHHHHHHHSCSSCE
T ss_pred CceEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCCcCcccceEEEEECHHHHhccchHHHHHHHHHhCCcCCe
Confidence 3333332222221 124578999999999997743 67999988766642211 12346789
Q ss_pred EEEeecccc--hhhhccccCCCCCCCeee
Q 038192 173 LILMSATLR--VEDFISGGRLFRNPPIIE 199 (764)
Q Consensus 173 lILMSATl~--~~~f~~~~~~f~~~~vi~ 199 (764)
+|+||||++ .+.+.. .|++++..|.
T Consensus 201 ~l~~SAT~~~~~~~~~~--~~l~~p~~i~ 227 (228)
T 3iuy_A 201 TVMTSATWPDTVRQLAL--SYLKDPMIVY 227 (228)
T ss_dssp EEEEESCCCHHHHHHHH--TTCSSCEEEE
T ss_pred EEEEEeeCCHHHHHHHH--HHCCCCEEEe
Confidence 999999995 455554 6776654443
No 72
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=99.45 E-value=6.6e-14 Score=165.16 Aligned_cols=86 Identities=26% Similarity=0.301 Sum_probs=74.8
Q ss_pred EEEecCCCCCHHHHHhhhccCCCCceEEEEecCcccccCCCCCeEEEEeCCcccceeeccCCCccccceeeccHHhHHHh
Q 038192 438 CVLPLYAMLPAAAQLRVFEDVKEGERLVVVSTNVAETSLTIPGIKYVVDTGREKVKKYNSANGIESYEIQWISKASAAQR 517 (764)
Q Consensus 438 ~i~pLHs~l~~~eQ~~vf~~~~~g~rKVIlsTNIAEtSITIpdV~~VID~G~~K~~~yd~~~~~~~l~~~~iSkasa~QR 517 (764)
.+..+||++++.+|.++++.+++|..+|++|||++++|++||+|.+||+++..+. + .+.|..++.||
T Consensus 471 ~~~~lh~~~~~~~R~~~l~~f~~g~~~VLVaT~~l~~GlDip~v~lVi~~d~d~~-------G------~p~s~~~~iQr 537 (661)
T 2d7d_A 471 KVNYLHSEIKTLERIEIIRDLRLGKYDVLVGINLLREGLDIPEVSLVAILDADKE-------G------FLRSERSLIQT 537 (661)
T ss_dssp CEEEECTTCCHHHHHHHHHHHHHTSCSEEEESCCCSTTCCCTTEEEEEETTTTCC-------T------TTTSHHHHHHH
T ss_pred CeEEEeCCCCHHHHHHHHHHHhcCCeEEEEecchhhCCcccCCCCEEEEeCcccc-------c------CCCCHHHHHHH
Confidence 4667899999999999999999999999999999999999999999998654221 1 14577889999
Q ss_pred ccccCCCCCCEEEEccCHH
Q 038192 518 AGRAGRTAPGHCYRLYSSA 536 (764)
Q Consensus 518 ~GRAGR~~~G~cyrLys~~ 536 (764)
+|||||.++|.|+.+++..
T Consensus 538 ~GRagR~~~G~~i~~~~~~ 556 (661)
T 2d7d_A 538 IGRAARNAEGRVIMYADKI 556 (661)
T ss_dssp HHTTTTSTTCEEEEECSSC
T ss_pred hCcccCCCCCEEEEEEeCC
Confidence 9999999999999999874
No 73
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=99.44 E-value=2.2e-13 Score=139.48 Aligned_cols=159 Identities=14% Similarity=0.143 Sum_probs=111.2
Q ss_pred chhhHHHHHHHHHcCCeEEEEecCCCCccccHHHHHHHhccCCCCCCCCCceEEEecccHHHHHHHHHHHHHHhCCCCCC
Q 038192 36 IVMMEQEIMEAVNDNSAVIICGETGCGKTTQVPQFLFEAGFGSNRCSSRSGRIGVTQPRRVAVLATAKRVAFELGLHLGK 115 (764)
Q Consensus 36 i~~~~~~Il~~l~~~~vviI~GeTGSGKTTqvPq~Lle~~~~~~~~~~~~~~Ii~tQPRRiaAisvA~RVa~E~g~~lG~ 115 (764)
.+.+|.+.+.++.+++.++++++||||||..+...+++...... ...++++..|+|.+|.++++++........|.
T Consensus 47 ~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~----~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~ 122 (230)
T 2oxc_A 47 PSPVQLKAIPLGRCGLDLIVQAKSGTGKTCVFSTIALDSLVLEN----LSTQILILAPTREIAVQIHSVITAIGIKMEGL 122 (230)
T ss_dssp CCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCTTS----CSCCEEEECSSHHHHHHHHHHHHHHTTTSTTC
T ss_pred CCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHhcC----CCceEEEEeCCHHHHHHHHHHHHHHhcccCCc
Confidence 46778888889888888999999999999987777777654322 12589999999999999999776543222255
Q ss_pred EeeEEeccCcc-----cCCCceEEEEchHHHHHHHHH-----------HHHHHHHHHhhc-cccC---Cc-cCCCCceEE
Q 038192 116 EVGFQVRHDKK-----IGDSCSIKFMTDGILLRELKA-----------LYEKQQQLLRSG-QCIE---PK-DRVFPLKLI 174 (764)
Q Consensus 116 ~VGY~ir~e~~-----~s~~t~I~f~T~GiLLr~l~~-----------i~de~~~~l~~~-~~~~---~~-~~~~~lKlI 174 (764)
.|+.-....+. .-.+++|+++|+|.|++.+.. |+||+|+++..+ +... +. ...++.++|
T Consensus 123 ~~~~~~g~~~~~~~~~~~~~~~Iiv~Tp~~l~~~~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~~i~~~~~~~~~~l 202 (230)
T 2oxc_A 123 ECHVFIGGTPLSQDKTRLKKCHIAVGSPGRIKQLIELDYLNPGSIRLFILDEADKLLEEGSFQEQINWIYSSLPASKQML 202 (230)
T ss_dssp CEEEECTTSCHHHHHHHTTSCSEEEECHHHHHHHHHTTSSCGGGCCEEEESSHHHHHSTTSSHHHHHHHHHHSCSSCEEE
T ss_pred eEEEEeCCCCHHHHHHhccCCCEEEECHHHHHHHHhcCCcccccCCEEEeCCchHhhcCcchHHHHHHHHHhCCCCCeEE
Confidence 56544433221 124678999999999998742 569999887665 3211 11 122478899
Q ss_pred Eeecccchh--hhccccCCCCCCCeeee
Q 038192 175 LMSATLRVE--DFISGGRLFRNPPIIEV 200 (764)
Q Consensus 175 LMSATl~~~--~f~~~~~~f~~~~vi~i 200 (764)
+||||++.+ .+.. +||+++..|.+
T Consensus 203 ~lSAT~~~~~~~~~~--~~~~~p~~i~~ 228 (230)
T 2oxc_A 203 AVSATYPEFLANALT--KYMRDPTFVRL 228 (230)
T ss_dssp EEESCCCHHHHHHHT--TTCSSCEEECC
T ss_pred EEEeccCHHHHHHHH--HHcCCCeEEEc
Confidence 999999543 4444 68877666654
No 74
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=99.44 E-value=1.1e-12 Score=151.70 Aligned_cols=101 Identities=25% Similarity=0.249 Sum_probs=70.7
Q ss_pred EEEecCCCCCHHHHHhhhccCCCCceEEEEecCcccccCCCC--------CeEEEEeCCcccceeeccCCCccccceeec
Q 038192 438 CVLPLYAMLPAAAQLRVFEDVKEGERLVVVSTNVAETSLTIP--------GIKYVVDTGREKVKKYNSANGIESYEIQWI 509 (764)
Q Consensus 438 ~i~pLHs~l~~~eQ~~vf~~~~~g~rKVIlsTNIAEtSITIp--------dV~~VID~G~~K~~~yd~~~~~~~l~~~~i 509 (764)
....|||+....++..+-+.+.+| .|+||||+|.||++|+ ++.+||++.+ |-
T Consensus 500 ~~~vLhgkq~~rE~~ii~~ag~~g--~VtVATdmAgRGtDI~lg~~V~~~GglhVInte~------------------Pe 559 (822)
T 3jux_A 500 PHQVLNAKYHEKEAEIVAKAGQKG--MVTIATNMAGRGTDIKLGPGVAELGGLCIIGTER------------------HE 559 (822)
T ss_dssp CCEEECSCHHHHHHHHHHHHHSTT--CEEEEETTTTTTCCCCCCTTTTTTTSCEEEESSC------------------CS
T ss_pred CEEEeeCCchHHHHHHHHhCCCCC--eEEEEcchhhCCcCccCCcchhhcCCCEEEecCC------------------CC
Confidence 345678886555655555555555 5999999999999998 7779998554 33
Q ss_pred cHHhHHHhccccCCCCC-CEEEEccCHHHhcccCCCCCCCcccccChhhHHHHHHHcCCC
Q 038192 510 SKASAAQRAGRAGRTAP-GHCYRLYSSAVFNNILPDFSCAEISKVPVDGVVLLMKSMNID 568 (764)
Q Consensus 510 Skasa~QR~GRAGR~~~-G~cyrLys~~~~~~~l~~~~~PEI~r~~L~~~~L~lk~l~~~ 568 (764)
|...+.||+|||||.|. |.++-+++.++. .|..|. -+.+--.+..+|+.
T Consensus 560 s~r~y~qriGRTGRqG~~G~a~~fvsleD~--l~r~fg--------~~~~~~~m~~~~~~ 609 (822)
T 3jux_A 560 SRRIDNQLRGRAGRQGDPGESIFFLSLEDD--LLRIFG--------SEQIGKVMNILKIE 609 (822)
T ss_dssp SHHHHHHHHTTSSCSSCCCEEEEEEETTSH--HHHHTT--------HHHHHHHHHHSSCC
T ss_pred CHHHHHHhhCccccCCCCeeEEEEechhHH--HHHhhh--------HHHHHHHHHHcCCC
Confidence 45566799999999995 999988887642 222222 23444456677764
No 75
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=99.43 E-value=2.6e-13 Score=154.85 Aligned_cols=85 Identities=14% Similarity=0.170 Sum_probs=65.2
Q ss_pred eEEEecCCCCCHHHHHhhhccCCCC--ceEEEEecCcccccCCCCCeEEEEeCCcccceeeccCCCccccceeeccHHhH
Q 038192 437 LCVLPLYAMLPAAAQLRVFEDVKEG--ERLVVVSTNVAETSLTIPGIKYVVDTGREKVKKYNSANGIESYEIQWISKASA 514 (764)
Q Consensus 437 ~~i~pLHs~l~~~eQ~~vf~~~~~g--~rKVIlsTNIAEtSITIpdV~~VID~G~~K~~~yd~~~~~~~l~~~~iSkasa 514 (764)
+.+..+||+++.++|.++++.|.+| .+.+++||++++.||+++++.+||. ||+..+.. .+
T Consensus 367 ~~~~~~~g~~~~~~R~~~~~~F~~~~~~~vil~st~~~~~Glnl~~~~~vi~--------~d~~~~~~----------~~ 428 (500)
T 1z63_A 367 TEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSVKAGGFGINLTSANRVIH--------FDRWWNPA----------VE 428 (500)
T ss_dssp CCCCEEETTSCHHHHHHHHHHHHHCTTCCCCEEECCCC-CCCCCTTCSEEEE--------SSCCSCC-------------
T ss_pred CCeEEEECCCCHHHHHHHHHHhcCCCCCCEEEEecccccCCCchhhCCEEEE--------eCCCCCcc----------hH
Confidence 3466789999999999999988766 3347899999999999999999996 66554433 44
Q ss_pred HHhccccCCCCC---CEEEEccCHHHhc
Q 038192 515 AQRAGRAGRTAP---GHCYRLYSSAVFN 539 (764)
Q Consensus 515 ~QR~GRAGR~~~---G~cyrLys~~~~~ 539 (764)
.||.||++|.+. ..+|+|+++...+
T Consensus 429 ~Q~~gR~~R~Gq~~~v~v~~lv~~~tie 456 (500)
T 1z63_A 429 DQATDRVYRIGQTRNVIVHKLISVGTLE 456 (500)
T ss_dssp CHHHHTTTTTTTTSCEEEEEEEETTSHH
T ss_pred HHHHHHHHHcCCCCeeEEEEEEeCCCHH
Confidence 599999999875 4578998875543
No 76
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=99.43 E-value=1.9e-13 Score=138.66 Aligned_cols=158 Identities=15% Similarity=0.146 Sum_probs=109.5
Q ss_pred chhhHHHHHHHHHcCCeEEEEecCCCCccccHHHHHHHhccCCCCCCCCCceEEEecccHHHHHHHHHHHHHHhCCCC--
Q 038192 36 IVMMEQEIMEAVNDNSAVIICGETGCGKTTQVPQFLFEAGFGSNRCSSRSGRIGVTQPRRVAVLATAKRVAFELGLHL-- 113 (764)
Q Consensus 36 i~~~~~~Il~~l~~~~vviI~GeTGSGKTTqvPq~Lle~~~~~~~~~~~~~~Ii~tQPRRiaAisvA~RVa~E~g~~l-- 113 (764)
.+.+|.++++++.+++.++++++||||||..+...+++...... ...++++..|+|.+|.++++++..-.. ..
T Consensus 27 ~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~----~~~~~lil~Pt~~L~~q~~~~~~~~~~-~~~~ 101 (219)
T 1q0u_A 27 PTEIQERIIPGALRGESMVGQSQTGTGKTHAYLLPIMEKIKPER----AEVQAVITAPTRELATQIYHETLKITK-FCPK 101 (219)
T ss_dssp CCHHHHHHHHHHHHTCCEEEECCSSHHHHHHHHHHHHHHCCTTS----CSCCEEEECSSHHHHHHHHHHHHHHHT-TSCG
T ss_pred CCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhCc----CCceEEEEcCcHHHHHHHHHHHHHHhh-hccc
Confidence 46778888888888888999999999999987777777654321 125799999999999999887755432 22
Q ss_pred --CCEeeEEeccCc------ccCCCceEEEEchHHHHHHHHH-----------HHHHHHHHHhhccccCC----ccCCCC
Q 038192 114 --GKEVGFQVRHDK------KIGDSCSIKFMTDGILLRELKA-----------LYEKQQQLLRSGQCIEP----KDRVFP 170 (764)
Q Consensus 114 --G~~VGY~ir~e~------~~s~~t~I~f~T~GiLLr~l~~-----------i~de~~~~l~~~~~~~~----~~~~~~ 170 (764)
+..++.-....+ ....+.+|+|+|+|.|++.+.. |+||+|.+...++...+ ....++
T Consensus 102 ~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~lViDEah~~~~~~~~~~l~~i~~~~~~~ 181 (219)
T 1q0u_A 102 DRMIVARCLIGGTDKQKALEKLNVQPHIVIGTPGRINDFIREQALDVHTAHILVVDEADLMLDMGFITDVDQIAARMPKD 181 (219)
T ss_dssp GGCCCEEEECCCSHHHHTTCCCSSCCSEEEECHHHHHHHHHTTCCCGGGCCEEEECSHHHHHHTTCHHHHHHHHHTSCTT
T ss_pred ccceEEEEEeCCCCHHHHHHHcCCCCCEEEeCHHHHHHHHHcCCCCcCcceEEEEcCchHHhhhChHHHHHHHHHhCCcc
Confidence 344444333322 1224678999999999998753 56999987766542211 122357
Q ss_pred ceEEEeecccch--hhhccccCCCCCCCeeee
Q 038192 171 LKLILMSATLRV--EDFISGGRLFRNPPIIEV 200 (764)
Q Consensus 171 lKlILMSATl~~--~~f~~~~~~f~~~~vi~i 200 (764)
.++++||||+.. ..+.. +|++++..+.+
T Consensus 182 ~~~l~~SAT~~~~~~~~~~--~~~~~p~~~~~ 211 (219)
T 1q0u_A 182 LQMLVFSATIPEKLKPFLK--KYMENPTFVHV 211 (219)
T ss_dssp CEEEEEESCCCGGGHHHHH--HHCSSCEEEEC
T ss_pred cEEEEEecCCCHHHHHHHH--HHcCCCeEEEe
Confidence 899999999944 34443 67776655544
No 77
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=99.42 E-value=3e-13 Score=135.35 Aligned_cols=160 Identities=21% Similarity=0.168 Sum_probs=110.5
Q ss_pred CchhhHHHHHHHHHcCCeEEEEecCCCCccccHHHHHHHhccCCCCCCCCCceEEEecccHHHHHHHHHHHHHHhCCCCC
Q 038192 35 PIVMMEQEIMEAVNDNSAVIICGETGCGKTTQVPQFLFEAGFGSNRCSSRSGRIGVTQPRRVAVLATAKRVAFELGLHLG 114 (764)
Q Consensus 35 Pi~~~~~~Il~~l~~~~vviI~GeTGSGKTTqvPq~Lle~~~~~~~~~~~~~~Ii~tQPRRiaAisvA~RVa~E~g~~lG 114 (764)
..+.+|.+.++.+.+++.++++++||||||+....++++....... .....++++..|+|.+|.++++++....+.
T Consensus 23 ~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~l~~~~~-~~~~~~~lil~P~~~L~~q~~~~~~~~~~~--- 98 (207)
T 2gxq_A 23 TPTPIQAAALPLALEGKDLIGQARTGTGKTLAFALPIAERLAPSQE-RGRKPRALVLTPTRELALQVASELTAVAPH--- 98 (207)
T ss_dssp SCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCCCCC-TTCCCSEEEECSSHHHHHHHHHHHHHHCTT---
T ss_pred CCCHHHHHHHHHHcCCCCEEEECCCCChHHHHHHHHHHHHHhhccc-cCCCCcEEEEECCHHHHHHHHHHHHHHhhc---
Confidence 4567788888888888889999999999999888777776542110 112368999999999999999988765432
Q ss_pred CEeeEEeccCcc------cCCCceEEEEchHHHHHHHHH-----------HHHHHHHHHhhccccC---C-ccCCCCceE
Q 038192 115 KEVGFQVRHDKK------IGDSCSIKFMTDGILLRELKA-----------LYEKQQQLLRSGQCIE---P-KDRVFPLKL 173 (764)
Q Consensus 115 ~~VGY~ir~e~~------~s~~t~I~f~T~GiLLr~l~~-----------i~de~~~~l~~~~~~~---~-~~~~~~lKl 173 (764)
..++.-....+. ...+++|+++|+|.|++.+.. |+||+|+++..++... + ....++.++
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDEah~~~~~~~~~~~~~i~~~~~~~~~~ 178 (207)
T 2gxq_A 99 LKVVAVYGGTGYGKQKEALLRGADAVVATPGRALDYLRQGVLDLSRVEVAVLDEADEMLSMGFEEEVEALLSATPPSRQT 178 (207)
T ss_dssp SCEEEECSSSCSHHHHHHHHHCCSEEEECHHHHHHHHHHTSSCCTTCSEEEEESHHHHHHTTCHHHHHHHHHTSCTTSEE
T ss_pred ceEEEEECCCChHHHHHHhhCCCCEEEECHHHHHHHHHcCCcchhhceEEEEEChhHhhccchHHHHHHHHHhCCccCeE
Confidence 223322222211 113578999999999998854 5699998766554211 1 122357899
Q ss_pred EEeecccc--hhhhccccCCCCCCCeeee
Q 038192 174 ILMSATLR--VEDFISGGRLFRNPPIIEV 200 (764)
Q Consensus 174 ILMSATl~--~~~f~~~~~~f~~~~vi~i 200 (764)
|+||||++ .+.+.+ .|++++.+|.+
T Consensus 179 i~~SAT~~~~~~~~~~--~~~~~p~~i~~ 205 (207)
T 2gxq_A 179 LLFSATLPSWAKRLAE--RYMKNPVLINV 205 (207)
T ss_dssp EEECSSCCHHHHHHHH--HHCSSCEEEEC
T ss_pred EEEEEecCHHHHHHHH--HHcCCCeEEEc
Confidence 99999995 455654 57776655554
No 78
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=99.42 E-value=2.1e-13 Score=140.72 Aligned_cols=164 Identities=13% Similarity=0.016 Sum_probs=110.1
Q ss_pred chhhHHHHHHHHHcCCeEEEEecCCCCccccHHHHHHHhccCCCC-CCCCCceEEEecccHHHHHHHHHHHHHHhCCCCC
Q 038192 36 IVMMEQEIMEAVNDNSAVIICGETGCGKTTQVPQFLFEAGFGSNR-CSSRSGRIGVTQPRRVAVLATAKRVAFELGLHLG 114 (764)
Q Consensus 36 i~~~~~~Il~~l~~~~vviI~GeTGSGKTTqvPq~Lle~~~~~~~-~~~~~~~Ii~tQPRRiaAisvA~RVa~E~g~~lG 114 (764)
-+.+|.+.+.++.+++.++++++||||||...-.++++....... ......++++..|+|.+|.++++++.. +....|
T Consensus 52 ~~~~Q~~~i~~~~~g~~~l~~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~-~~~~~~ 130 (242)
T 3fe2_A 52 PTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLERGDGPICLVLAPTRELAQQVQQVAAE-YCRACR 130 (242)
T ss_dssp CCHHHHHHHHHHHHTCCEEEEECTTSCHHHHHHHHHHHHHHTSCCCCTTCCCSEEEECSSHHHHHHHHHHHHH-HHHHTT
T ss_pred CCHHHHHHHHHHhCCCCEEEECCCcCHHHHHHHHHHHHHHHhccccccCCCCEEEEEeCcHHHHHHHHHHHHH-HHhhcC
Confidence 456777777888888889999999999998765555554321110 001235789999999999999876543 333334
Q ss_pred CEeeEEeccCccc------CCCceEEEEchHHHHHHHHH-----------HHHHHHHHHhhccccCC----ccCCCCceE
Q 038192 115 KEVGFQVRHDKKI------GDSCSIKFMTDGILLRELKA-----------LYEKQQQLLRSGQCIEP----KDRVFPLKL 173 (764)
Q Consensus 115 ~~VGY~ir~e~~~------s~~t~I~f~T~GiLLr~l~~-----------i~de~~~~l~~~~~~~~----~~~~~~lKl 173 (764)
..++.-....+.. ..+++|+++|+|+|++.+.. |+||+|.++..++...+ ....++.++
T Consensus 131 ~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~lViDEah~l~~~~~~~~~~~i~~~~~~~~q~ 210 (242)
T 3fe2_A 131 LKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQT 210 (242)
T ss_dssp CCEEEECTTSCHHHHHHHHHHCCSEEEECHHHHHHHHHHTSCCCTTCCEEEETTHHHHHHTTCHHHHHHHHTTSCSSCEE
T ss_pred ceEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCCCCcccccEEEEeCHHHHhhhCcHHHHHHHHHhCCccceE
Confidence 4455444333211 23578999999999998853 67999988776653211 223467899
Q ss_pred EEeecccc--hhhhccccCCCCCCCeeeeCC
Q 038192 174 ILMSATLR--VEDFISGGRLFRNPPIIEVPT 202 (764)
Q Consensus 174 ILMSATl~--~~~f~~~~~~f~~~~vi~i~g 202 (764)
++||||+. .+.+.. .|++++..|.+..
T Consensus 211 ~~~SAT~~~~~~~~~~--~~l~~~~~i~~~~ 239 (242)
T 3fe2_A 211 LMWSATWPKEVRQLAE--DFLKDYIHINIGA 239 (242)
T ss_dssp EEEESCCCHHHHHHHH--HHCSSCEEEEECC
T ss_pred EEEEeecCHHHHHHHH--HHCCCCEEEEecC
Confidence 99999994 455654 5777766666643
No 79
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=99.42 E-value=3.6e-13 Score=134.79 Aligned_cols=153 Identities=18% Similarity=0.178 Sum_probs=106.7
Q ss_pred chhhHHHHHHHHHcCCeEEEEecCCCCccccHHHHHHHhccCCCCCCCCCceEEEecccHHHHHHHHHHHHHHhCCCC-C
Q 038192 36 IVMMEQEIMEAVNDNSAVIICGETGCGKTTQVPQFLFEAGFGSNRCSSRSGRIGVTQPRRVAVLATAKRVAFELGLHL-G 114 (764)
Q Consensus 36 i~~~~~~Il~~l~~~~vviI~GeTGSGKTTqvPq~Lle~~~~~~~~~~~~~~Ii~tQPRRiaAisvA~RVa~E~g~~l-G 114 (764)
.+.+|.+.++++.+++.++++++||||||......+++...... ...++++..|+|.+|.++++++..-. ... +
T Consensus 26 ~~~~Q~~~i~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~~~----~~~~~lil~Pt~~L~~q~~~~~~~~~-~~~~~ 100 (206)
T 1vec_A 26 PSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLERLDLKK----DNIQAMVIVPTRELALQVSQICIQVS-KHMGG 100 (206)
T ss_dssp CCHHHHHHHHHHHTTCCEEEECCSSSTTHHHHHHHHHHHCCTTS----CSCCEEEECSCHHHHHHHHHHHHHHT-TTSSS
T ss_pred CCHHHHHHHHHHccCCCEEEECCCCCchHHHHHHHHHHHhcccC----CCeeEEEEeCcHHHHHHHHHHHHHHH-hhcCC
Confidence 46778888899888888999999999999887777776543221 12579999999999999998776543 333 4
Q ss_pred CEeeEEeccCcc------cCCCceEEEEchHHHHHHHHH-----------HHHHHHHHHhhccccC---Cc-cCCCCceE
Q 038192 115 KEVGFQVRHDKK------IGDSCSIKFMTDGILLRELKA-----------LYEKQQQLLRSGQCIE---PK-DRVFPLKL 173 (764)
Q Consensus 115 ~~VGY~ir~e~~------~s~~t~I~f~T~GiLLr~l~~-----------i~de~~~~l~~~~~~~---~~-~~~~~lKl 173 (764)
..|+......+. ....++|+++|+|.|++.+.. |+||+|.+...++... +. ...++.++
T Consensus 101 ~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~lViDEah~~~~~~~~~~l~~i~~~~~~~~~~ 180 (206)
T 1vec_A 101 AKVMATTGGTNLRDDIMRLDDTVHVVIATPGRILDLIKKGVAKVDHVQMIVLDEADKLLSQDFVQIMEDIILTLPKNRQI 180 (206)
T ss_dssp CCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEEETHHHHTSTTTHHHHHHHHHHSCTTCEE
T ss_pred ceEEEEeCCccHHHHHHhcCCCCCEEEeCHHHHHHHHHcCCcCcccCCEEEEEChHHhHhhCcHHHHHHHHHhCCccceE
Confidence 455554433321 235678999999999998853 5699998665443211 11 12247899
Q ss_pred EEeecccc--hhhhccccCCCCCC
Q 038192 174 ILMSATLR--VEDFISGGRLFRNP 195 (764)
Q Consensus 174 ILMSATl~--~~~f~~~~~~f~~~ 195 (764)
|+||||+. ...+.. .|++++
T Consensus 181 l~~SAT~~~~~~~~~~--~~l~~p 202 (206)
T 1vec_A 181 LLYSATFPLSVQKFMN--SHLEKP 202 (206)
T ss_dssp EEEESCCCHHHHHHHH--HHCSSC
T ss_pred EEEEeeCCHHHHHHHH--HHcCCC
Confidence 99999994 444553 466544
No 80
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=99.42 E-value=1.5e-13 Score=143.98 Aligned_cols=158 Identities=20% Similarity=0.221 Sum_probs=106.8
Q ss_pred chhhHHHHHHHHHcCCeEEEEecCCCCccccHHHHHHHhccCCCCCCCCCceEEEecccHHHHHHHHHHHHHHhCCCCCC
Q 038192 36 IVMMEQEIMEAVNDNSAVIICGETGCGKTTQVPQFLFEAGFGSNRCSSRSGRIGVTQPRRVAVLATAKRVAFELGLHLGK 115 (764)
Q Consensus 36 i~~~~~~Il~~l~~~~vviI~GeTGSGKTTqvPq~Lle~~~~~~~~~~~~~~Ii~tQPRRiaAisvA~RVa~E~g~~lG~ 115 (764)
.+..|.+.+..+..++.++++|+||||||...-..+++.............++++..|+|.+|.++++++. +++...|.
T Consensus 77 ~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~lil~Pt~~La~q~~~~~~-~~~~~~~~ 155 (262)
T 3ly5_A 77 MTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPAVELIVKLRFMPRNGTGVLILSPTRELAMQTFGVLK-ELMTHHVH 155 (262)
T ss_dssp CCHHHHHHHHHHHHTCCCEECCCTTSCHHHHHHHHHHHHHHHTTCCGGGCCCEEEECSSHHHHHHHHHHHH-HHTTTCCS
T ss_pred CCHHHHHHHHHHhCCCcEEEEccCCCCchHHHHHHHHHHHHhccccccCCceEEEEeCCHHHHHHHHHHHH-HHHhhcCc
Confidence 45677778888877788999999999999875555554321110000112579999999999999988665 45556676
Q ss_pred EeeEEeccCccc------CCCceEEEEchHHHHHHHHH------------HHHHHHHHHhhccccCC----ccCCCCceE
Q 038192 116 EVGFQVRHDKKI------GDSCSIKFMTDGILLRELKA------------LYEKQQQLLRSGQCIEP----KDRVFPLKL 173 (764)
Q Consensus 116 ~VGY~ir~e~~~------s~~t~I~f~T~GiLLr~l~~------------i~de~~~~l~~~~~~~~----~~~~~~lKl 173 (764)
.++..+...... ..+++|+|+|+|.|++.+.. |+||+|+++..++...+ ....++.++
T Consensus 156 ~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~~~~~~~~~~~~l~~lViDEah~l~~~~~~~~l~~i~~~~~~~~q~ 235 (262)
T 3ly5_A 156 TYGLIMGGSNRSAEAQKLGNGINIIVATPGRLLDHMQNTPGFMYKNLQCLVIDEADRILDVGFEEELKQIIKLLPTRRQT 235 (262)
T ss_dssp CEEEECSSSCHHHHHHHHHHCCSEEEECHHHHHHHHHHCTTCCCTTCCEEEECSHHHHHHTTCHHHHHHHHHHSCSSSEE
T ss_pred eEEEEECCCCHHHHHHHhcCCCCEEEEcHHHHHHHHHccCCcccccCCEEEEcChHHHhhhhHHHHHHHHHHhCCCCCeE
Confidence 676655543321 13478999999999998853 56999988776653211 122356899
Q ss_pred EEeecccc--hhhhccccCCCCCCC
Q 038192 174 ILMSATLR--VEDFISGGRLFRNPP 196 (764)
Q Consensus 174 ILMSATl~--~~~f~~~~~~f~~~~ 196 (764)
|+||||+. ++.|.. .++...+
T Consensus 236 l~~SAT~~~~v~~~~~--~~l~~~~ 258 (262)
T 3ly5_A 236 MLFSATQTRKVEDLAR--ISLKKEP 258 (262)
T ss_dssp EEECSSCCHHHHHHHH--HHCSSCC
T ss_pred EEEEecCCHHHHHHHH--HHcCCCC
Confidence 99999994 455653 3454443
No 81
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=99.40 E-value=3.1e-13 Score=165.53 Aligned_cols=124 Identities=15% Similarity=-0.014 Sum_probs=76.5
Q ss_pred CeEEEEecCCCCccccHHHHHHHhccCCCCCCCCCceEEEecccHHHHHHHHHHHHHHhCCCCCCEeeEEec-cCccc-C
Q 038192 51 SAVIICGETGCGKTTQVPQFLFEAGFGSNRCSSRSGRIGVTQPRRVAVLATAKRVAFELGLHLGKEVGFQVR-HDKKI-G 128 (764)
Q Consensus 51 ~vviI~GeTGSGKTTqvPq~Lle~~~~~~~~~~~~~~Ii~tQPRRiaAisvA~RVa~E~g~~lG~~VGY~ir-~e~~~-s 128 (764)
...+|..+||||||... .++.......+ ...++++.-||+.++.|+.+.+..-....++. |.... +.... .
T Consensus 301 ~~gli~~~TGSGKT~t~-~~l~~ll~~~~----~~~rvLvlvpr~eL~~Q~~~~f~~f~~~~v~~--~~s~~~l~~~L~~ 373 (1038)
T 2w00_A 301 SGGYIWHTTGSGKTLTS-FKAARLATELD----FIDKVFFVVDRKDLDYQTMKEYQRFSPDSVNG--SENTAGLKRNLDK 373 (1038)
T ss_dssp GSEEEEECTTSSHHHHH-HHHHHHHTTCT----TCCEEEEEECGGGCCHHHHHHHHTTSTTCSSS--SCCCHHHHHHHHC
T ss_pred CCEEEEecCCCCHHHHH-HHHHHHHHhcC----CCceEEEEeCcHHHHHHHHHHHHHhccccccc--ccCHHHHHHHhcC
Confidence 45789999999999775 33443322111 12589999999999999877654322111110 11000 00011 3
Q ss_pred CCceEEEEchHHHHHHHHH-------------HHHHHHHHHhhccccCCccCCCCceEEEeecccc
Q 038192 129 DSCSIKFMTDGILLRELKA-------------LYEKQQQLLRSGQCIEPKDRVFPLKLILMSATLR 181 (764)
Q Consensus 129 ~~t~I~f~T~GiLLr~l~~-------------i~de~~~~l~~~~~~~~~~~~~~lKlILMSATl~ 181 (764)
...+|+|+|++.|.+.+.. |+||+|++...+....+....|+.+++.||||..
T Consensus 374 ~~~~IiVtTiqkl~~~l~~~~~~~~~~~~~lvIiDEAHrs~~~~~~~~I~~~~p~a~~lgfTATP~ 439 (1038)
T 2w00_A 374 DDNKIIVTTIQKLNNLMKAESDLPVYNQQVVFIFDECHRSQFGEAQKNLKKKFKRYYQFGFTGTPI 439 (1038)
T ss_dssp SSCCEEEEEHHHHHHHHHHCCCCGGGGSCEEEEEESCCTTHHHHHHHHHHHHCSSEEEEEEESSCC
T ss_pred CCCCEEEEEHHHHHHHHhcccchhccccccEEEEEccchhcchHHHHHHHHhCCcccEEEEeCCcc
Confidence 4578999999999987642 4588887654333222233446789999999993
No 82
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=99.38 E-value=9.5e-13 Score=133.36 Aligned_cols=158 Identities=14% Similarity=0.058 Sum_probs=107.6
Q ss_pred chhhHHHHHHHHHcCCeEEEEecCCCCccccHHHHHHHhccCCCCCCCCCceEEEecccHHHHHHHHHHHHHHhCCCCCC
Q 038192 36 IVMMEQEIMEAVNDNSAVIICGETGCGKTTQVPQFLFEAGFGSNRCSSRSGRIGVTQPRRVAVLATAKRVAFELGLHLGK 115 (764)
Q Consensus 36 i~~~~~~Il~~l~~~~vviI~GeTGSGKTTqvPq~Lle~~~~~~~~~~~~~~Ii~tQPRRiaAisvA~RVa~E~g~~lG~ 115 (764)
.+.+|.+.++++.++..++++++||||||......+++...... ...++++..|+|.+|.++++++..-....-|.
T Consensus 37 ~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~~~~~~----~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~ 112 (220)
T 1t6n_A 37 PSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVT----GQVSVLVMCHTRELAFQISKEYERFSKYMPNV 112 (220)
T ss_dssp CCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCCCT----TCCCEEEECSCHHHHHHHHHHHHHHTTTSTTC
T ss_pred CCHHHHHHHHHHhCCCCEEEECCCCCchhhhhhHHHHHhhhccC----CCEEEEEEeCCHHHHHHHHHHHHHHHhhCCCc
Confidence 46778888888888888999999999999988777777643221 12489999999999999998776543221245
Q ss_pred EeeEEeccCcc-------cCCCceEEEEchHHHHHHHHH-----------HHHHHHHHHh-hcccc---CC-ccCCCCce
Q 038192 116 EVGFQVRHDKK-------IGDSCSIKFMTDGILLRELKA-----------LYEKQQQLLR-SGQCI---EP-KDRVFPLK 172 (764)
Q Consensus 116 ~VGY~ir~e~~-------~s~~t~I~f~T~GiLLr~l~~-----------i~de~~~~l~-~~~~~---~~-~~~~~~lK 172 (764)
.|+.-....+. .....+|+++|+|.|++.+.. |+||+|.++. .++.. .+ ....++.+
T Consensus 113 ~v~~~~g~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~~i~~~~~~~~~ 192 (220)
T 1t6n_A 113 KVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQ 192 (220)
T ss_dssp CEEEESCCSCHHHHHHHHHHSCCSEEEECHHHHHHHHHTTSSCCTTCCEEEEESHHHHHSSHHHHHHHHHHHHTSCSSSE
T ss_pred eEEEEeCCCChHHHHHHHhcCCCCEEEeCHHHHHHHHHhCCCCcccCCEEEEcCHHHHhcccCcHHHHHHHHHhCCCcCe
Confidence 55543332221 112468999999999998743 5689988764 23211 11 11234789
Q ss_pred EEEeecccc--hhhhccccCCCCCCCeee
Q 038192 173 LILMSATLR--VEDFISGGRLFRNPPIIE 199 (764)
Q Consensus 173 lILMSATl~--~~~f~~~~~~f~~~~vi~ 199 (764)
+|+||||+. .+.+.+ .|++++..|.
T Consensus 193 ~i~~SAT~~~~~~~~~~--~~~~~p~~i~ 219 (220)
T 1t6n_A 193 VMMFSATLSKEIRPVCR--KFMQDPMEIF 219 (220)
T ss_dssp EEEEESCCCTTTHHHHH--TTCSSCEEEE
T ss_pred EEEEEeecCHHHHHHHH--HHcCCCeEEe
Confidence 999999994 455554 6887765554
No 83
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=99.34 E-value=9e-13 Score=136.69 Aligned_cols=163 Identities=13% Similarity=0.190 Sum_probs=107.7
Q ss_pred chhhHHHHHHHHHcCCeEEEEecCCCCccccHHHHHHHhccCCCC-----CCCCCceEEEecccHHHHHHHHHHHHHHhC
Q 038192 36 IVMMEQEIMEAVNDNSAVIICGETGCGKTTQVPQFLFEAGFGSNR-----CSSRSGRIGVTQPRRVAVLATAKRVAFELG 110 (764)
Q Consensus 36 i~~~~~~Il~~l~~~~vviI~GeTGSGKTTqvPq~Lle~~~~~~~-----~~~~~~~Ii~tQPRRiaAisvA~RVa~E~g 110 (764)
.+.+|.+.++++.+++.++++++||||||......+++....... ......++++..|+|.+|.++++++.. ++
T Consensus 46 ~~~~Q~~~i~~i~~~~~~l~~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~-~~ 124 (253)
T 1wrb_A 46 PTPIQKNAIPAILEHRDIMACAQTGSGKTAAFLIPIINHLVCQDLNQQRYSKTAYPKCLILAPTRELAIQILSESQK-FS 124 (253)
T ss_dssp CCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHTTCC------CCBCCSEEEECSSHHHHHHHHHHHHH-HH
T ss_pred CCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhhccccccccccCCceEEEEECCHHHHHHHHHHHHH-Hh
Confidence 356778888888888889999999999998766666654322110 001125799999999999999987654 33
Q ss_pred CCCCCEeeEEeccCcc------cCCCceEEEEchHHHHHHHHH-----------HHHHHHHHHhhccccC---Cc---cC
Q 038192 111 LHLGKEVGFQVRHDKK------IGDSCSIKFMTDGILLRELKA-----------LYEKQQQLLRSGQCIE---PK---DR 167 (764)
Q Consensus 111 ~~lG~~VGY~ir~e~~------~s~~t~I~f~T~GiLLr~l~~-----------i~de~~~~l~~~~~~~---~~---~~ 167 (764)
...+..++......+. ....++|+++|+|.|++.+.. |+||+|+++..++... +. ..
T Consensus 125 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~i~~~~~~ 204 (253)
T 1wrb_A 125 LNTPLRSCVVYGGADTHSQIREVQMGCHLLVATPGRLVDFIEKNKISLEFCKYIVLDEADRMLDMGFEPQIRKIIEESNM 204 (253)
T ss_dssp TTSSCCEEEECSSSCSHHHHHHHSSCCSEEEECHHHHHHHHHTTSBCCTTCCEEEEETHHHHHHTTCHHHHHHHHHSSCC
T ss_pred ccCCceEEEEECCCCHHHHHHHhCCCCCEEEECHHHHHHHHHcCCCChhhCCEEEEeCHHHHHhCchHHHHHHHHhhccC
Confidence 3334444443333221 134678999999999998853 5699998876654211 11 11
Q ss_pred C--CCceEEEeecccc--hhhhccccCCCCCCCeeeeC
Q 038192 168 V--FPLKLILMSATLR--VEDFISGGRLFRNPPIIEVP 201 (764)
Q Consensus 168 ~--~~lKlILMSATl~--~~~f~~~~~~f~~~~vi~i~ 201 (764)
. .+.++++||||+. .+.+.. .|+.++..|.+.
T Consensus 205 ~~~~~~q~l~~SAT~~~~~~~~~~--~~l~~~~~i~~~ 240 (253)
T 1wrb_A 205 PSGINRQTLMFSATFPKEIQKLAA--DFLYNYIFMTVG 240 (253)
T ss_dssp CCGGGCEEEEEESSCCHHHHHHHH--HHCSSCEEEEEC
T ss_pred CCCCCcEEEEEEEeCCHHHHHHHH--HHcCCCEEEEEC
Confidence 1 2678999999994 445554 566665555553
No 84
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=99.02 E-value=9.3e-14 Score=135.75 Aligned_cols=85 Identities=21% Similarity=0.283 Sum_probs=75.6
Q ss_pred CeEEEecCCCCCHHHHHhhhccCCCCceEEEEecCcccccCCCCCeEEEEeCCcccceeeccCCCccccceeeccHHhHH
Q 038192 436 ALCVLPLYAMLPAAAQLRVFEDVKEGERLVVVSTNVAETSLTIPGIKYVVDTGREKVKKYNSANGIESYEIQWISKASAA 515 (764)
Q Consensus 436 ~~~i~pLHs~l~~~eQ~~vf~~~~~g~rKVIlsTNIAEtSITIpdV~~VID~G~~K~~~yd~~~~~~~l~~~~iSkasa~ 515 (764)
++.+..+||+|++.+|.++++.|..|..+|++||+++++||++|++.+||+ ||+ |.|.+++.
T Consensus 54 ~~~~~~~~g~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gid~~~~~~Vi~--------~~~----------p~~~~~~~ 115 (170)
T 2yjt_D 54 GINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVATDVAARGIDIPDVSHVFN--------FDM----------PRSGDTYL 115 (170)
Confidence 467889999999999999999999999999999999999999999999997 443 34667778
Q ss_pred HhccccCCCC-CCEEEEccCHHHh
Q 038192 516 QRAGRAGRTA-PGHCYRLYSSAVF 538 (764)
Q Consensus 516 QR~GRAGR~~-~G~cyrLys~~~~ 538 (764)
||+|||||.+ +|.||.+++....
T Consensus 116 qr~GR~~R~g~~g~~~~~~~~~~~ 139 (170)
T 2yjt_D 116 HRIGRTARAGRKGTAISLVEAHDH 139 (170)
Confidence 9999999997 5999999988654
No 85
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=99.17 E-value=2.7e-11 Score=146.15 Aligned_cols=87 Identities=18% Similarity=0.216 Sum_probs=71.4
Q ss_pred CeEEEecCCCCCHHHHHhhhccCCCC---ceEEEEecCcccccCCCCCeEEEEeCCcccceeeccCCCccccceeeccHH
Q 038192 436 ALCVLPLYAMLPAAAQLRVFEDVKEG---ERLVVVSTNVAETSLTIPGIKYVVDTGREKVKKYNSANGIESYEIQWISKA 512 (764)
Q Consensus 436 ~~~i~pLHs~l~~~eQ~~vf~~~~~g---~rKVIlsTNIAEtSITIpdV~~VID~G~~K~~~yd~~~~~~~l~~~~iSka 512 (764)
++.+..+||+++..+|.++++.|..+ ...+++||.+++.||+++.+..||. ||+.- +.+
T Consensus 596 g~~~~~i~G~~~~~eR~~~i~~F~~~~~~~~v~LlSt~agg~GlNL~~a~~VI~--------~D~~w----------np~ 657 (800)
T 3mwy_W 596 GINFQRLDGTVPSAQRRISIDHFNSPDSNDFVFLLSTRAGGLGINLMTADTVVI--------FDSDW----------NPQ 657 (800)
T ss_dssp TCCCEEESTTSCHHHHHHHHHTTSSTTCSCCCEEEEHHHHTTTCCCTTCCEEEE--------SSCCS----------CSH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHhhCCCCCceEEEEecccccCCCCccccceEEE--------ecCCC----------Chh
Confidence 35678899999999999999998764 3469999999999999999999995 77553 345
Q ss_pred hHHHhccccCCCC---CCEEEEccCHHHhcc
Q 038192 513 SAAQRAGRAGRTA---PGHCYRLYSSAVFNN 540 (764)
Q Consensus 513 sa~QR~GRAGR~~---~G~cyrLys~~~~~~ 540 (764)
...||.|||+|.| +..+|||+++...+.
T Consensus 658 ~~~Qa~gR~~RiGQ~k~V~Vyrlv~~~TiEe 688 (800)
T 3mwy_W 658 ADLQAMARAHRIGQKNHVMVYRLVSKDTVEE 688 (800)
T ss_dssp HHHHHHTTTSCSSCCSCEEEEEEEETTSHHH
T ss_pred hHHHHHHHHHhcCCCceEEEEEEecCCCHHH
Confidence 6679999999865 578999999876653
No 86
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=99.14 E-value=1.2e-10 Score=137.27 Aligned_cols=86 Identities=16% Similarity=0.247 Sum_probs=71.1
Q ss_pred CeEEEecCCCCCHHHHHhhhccCCCCc---eEEEEecCcccccCCCCCeEEEEeCCcccceeeccCCCccccceeeccHH
Q 038192 436 ALCVLPLYAMLPAAAQLRVFEDVKEGE---RLVVVSTNVAETSLTIPGIKYVVDTGREKVKKYNSANGIESYEIQWISKA 512 (764)
Q Consensus 436 ~~~i~pLHs~l~~~eQ~~vf~~~~~g~---rKVIlsTNIAEtSITIpdV~~VID~G~~K~~~yd~~~~~~~l~~~~iSka 512 (764)
++.+..+||+++.++|.++++.|.+|. ..+++||.++..||+++++.+||. ||+. -+.+
T Consensus 440 g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~L~st~a~g~Glnl~~a~~Vi~--------~d~~----------wnp~ 501 (644)
T 1z3i_X 440 RYLYVRLDGTMSIKKRAKIVERFNNPSSPEFIFMLSSKAGGCGLNLIGANRLVM--------FDPD----------WNPA 501 (644)
T ss_dssp TCCEEEECSSCCHHHHHHHHHHHHSTTCCCCEEEEEGGGSCTTCCCTTEEEEEE--------CSCC----------SSHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHhcCCCCCcEEEEEecccccCCcccccCCEEEE--------ECCC----------CCcc
Confidence 356788999999999999988887664 358999999999999999999995 6654 4567
Q ss_pred hHHHhccccCCCCC---CEEEEccCHHHhc
Q 038192 513 SAAQRAGRAGRTAP---GHCYRLYSSAVFN 539 (764)
Q Consensus 513 sa~QR~GRAGR~~~---G~cyrLys~~~~~ 539 (764)
...||.||++|.|. ..+|+|++....+
T Consensus 502 ~~~Qa~gR~~R~Gq~~~v~v~~lv~~~tiE 531 (644)
T 1z3i_X 502 NDEQAMARVWRDGQKKTCYIYRLLSTGTIE 531 (644)
T ss_dssp HHHHHHTTSSSTTCCSCEEEEEEEETTSHH
T ss_pred HHHHHHHhhhhcCCCCceEEEEEEECCCHH
Confidence 78899999998875 5789999876544
No 87
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=99.01 E-value=7.7e-11 Score=118.16 Aligned_cols=147 Identities=17% Similarity=0.124 Sum_probs=89.8
Q ss_pred hhcCCCchhhHHHHHHHHHcCCeEEEEecCCCCccccHHHHHHHhccCCCCCCCCCceEEEecccHHHHHH-HHHHHHHH
Q 038192 30 NRKDLPIVMMEQEIMEAVNDNSAVIICGETGCGKTTQVPQFLFEAGFGSNRCSSRSGRIGVTQPRRVAVLA-TAKRVAFE 108 (764)
Q Consensus 30 ~R~~LPi~~~~~~Il~~l~~~~vviI~GeTGSGKTTqvPq~Lle~~~~~~~~~~~~~~Ii~tQPRRiaAis-vA~RVa~E 108 (764)
....++.+.+|.+.++.+.+++.++|.++||||||+....++++....... .....++++..|++.++.+ +++.+...
T Consensus 28 ~~~~~~l~~~Q~~~i~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~-~~~~~~~lil~p~~~L~~q~~~~~~~~~ 106 (216)
T 3b6e_A 28 PEPELQLRPYQMEVAQPALEGKNIIICLPTGSGKTRVAVYIAKDHLDKKKK-ASEPGKVIVLVNKVLLVEQLFRKEFQPF 106 (216)
T ss_dssp CSCCCCCCHHHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHHHHHHHH-TTCCCCEEEEESSHHHHHHHHHHTHHHH
T ss_pred ccCCCCchHHHHHHHHHHhcCCCEEEEcCCCCCHHHHHHHHHHHHHhhccc-ccCCCcEEEEECHHHHHHHHHHHHHHHH
Confidence 345678889999999999888889999999999999877776653211000 0012578899999999988 55544443
Q ss_pred hCCCCCCEeeEEeccCcc------cCCCceEEEEchHHHHHHHHH-----------------HHHHHHHHHhhccccCC-
Q 038192 109 LGLHLGKEVGFQVRHDKK------IGDSCSIKFMTDGILLRELKA-----------------LYEKQQQLLRSGQCIEP- 164 (764)
Q Consensus 109 ~g~~lG~~VGY~ir~e~~------~s~~t~I~f~T~GiLLr~l~~-----------------i~de~~~~l~~~~~~~~- 164 (764)
.+. +..|+.-...... .....+|+|+|++.|++.+.. |+||+|.+...++...+
T Consensus 107 ~~~--~~~v~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iIiDEah~~~~~~~~~~~~ 184 (216)
T 3b6e_A 107 LKK--WYRVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNKEAVYNNIM 184 (216)
T ss_dssp HTT--TSCEEECCC---CCCCHHHHHHHCSEEEEEHHHHHHHHHC-------CCCGGGCSEEEETTC-------CHHHHH
T ss_pred hcc--CceEEEEeCCcccchhHHhhccCCCEEEECHHHHHHHHhccCcccccccchhcccEEEEECchhhccCCcHHHHH
Confidence 332 2233321111110 012378999999999987631 45888865433221111
Q ss_pred ---c--------------cCCCCceEEEeecc
Q 038192 165 ---K--------------DRVFPLKLILMSAT 179 (764)
Q Consensus 165 ---~--------------~~~~~lKlILMSAT 179 (764)
. ...++.++|+||||
T Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~lSAT 216 (216)
T 3b6e_A 185 RHYLMQKLKNNRLKKENKPVIPLPQILGLTAS 216 (216)
T ss_dssp HHHHHHHHHHHHHHHTTCCCCCCCEEEEEECC
T ss_pred HHHHHHhcccccccccccCCCCcceEEEeecC
Confidence 0 01267899999998
No 88
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=98.86 E-value=9.2e-10 Score=116.00 Aligned_cols=140 Identities=10% Similarity=-0.066 Sum_probs=92.0
Q ss_pred CCchhhHHHHHHHHHcCCeEEEEecCCCCccccHHHHHHHhccCCCCCCCCCceEEEecccHHHHHHHHHHHHHHhCCCC
Q 038192 34 LPIVMMEQEIMEAVNDNSAVIICGETGCGKTTQVPQFLFEAGFGSNRCSSRSGRIGVTQPRRVAVLATAKRVAFELGLHL 113 (764)
Q Consensus 34 LPi~~~~~~Il~~l~~~~vviI~GeTGSGKTTqvPq~Lle~~~~~~~~~~~~~~Ii~tQPRRiaAisvA~RVa~E~g~~l 113 (764)
+..+.+|.+.+..+..+...+++++||||||.+.-..+...... + .+++++..|+|.++.+..+++.+. +...
T Consensus 112 ~~l~~~Q~~ai~~~l~~~~~ll~~~tGsGKT~~~~~~~~~~~~~-~-----~~~~lil~Pt~~L~~q~~~~l~~~-~~~~ 184 (282)
T 1rif_A 112 IEPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLEN-Y-----EGKILIIVPTTALTTQMADDFVDY-RLFS 184 (282)
T ss_dssp CCCCHHHHHHHHHHHHHSEEEECCCTTSCHHHHHHHHHHHHHHH-C-----SSEEEEECSSHHHHHHHHHHHHHH-TSCC
T ss_pred cCccHHHHHHHHHHHhcCCeEEEcCCCCCcHHHHHHHHHHHHHc-C-----CCeEEEEECCHHHHHHHHHHHHHh-cccc
Confidence 45666778888876666667889999999999875555443211 1 148999999999999999988654 4333
Q ss_pred CCEeeEEeccCcccC---CCceEEEEchHHHHHHHH----H----HHHHHHHHHhhccccCCccCCCCceEEEeeccc
Q 038192 114 GKEVGFQVRHDKKIG---DSCSIKFMTDGILLRELK----A----LYEKQQQLLRSGQCIEPKDRVFPLKLILMSATL 180 (764)
Q Consensus 114 G~~VGY~ir~e~~~s---~~t~I~f~T~GiLLr~l~----~----i~de~~~~l~~~~~~~~~~~~~~lKlILMSATl 180 (764)
+..+++-........ ....|+++|++.|++... . |+||+|++....+...+....+..++++||||+
T Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~vIiDEaH~~~~~~~~~il~~~~~~~~~l~lSATp 262 (282)
T 1rif_A 185 HAMIKKIGGGASKDDKYKNDAPVVVGTWQTVVKQPKEWFSQFGMMMNDECHLATGKSISSIISGLNNCMFKFGLSGSL 262 (282)
T ss_dssp GGGEEECSTTCSSTTCCCTTCSEEEECHHHHTTSCGGGGGGEEEEEEETGGGCCHHHHHHHTTTCTTCCEEEEECSSC
T ss_pred cceEEEEeCCCcchhhhccCCcEEEEchHHHHhhHHHHHhhCCEEEEECCccCCcccHHHHHHHhhcCCeEEEEeCCC
Confidence 334443323222221 568899999999987632 1 568988754332211112223578999999999
No 89
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=98.58 E-value=2.6e-08 Score=102.45 Aligned_cols=128 Identities=15% Similarity=0.113 Sum_probs=87.2
Q ss_pred CchhhHHHHHHHHHcCCeEEEEecCCCCccccHHHHHHHhccCCCCCCCCCceEEEecccHHHHHHHHHHHHHHhCCCCC
Q 038192 35 PIVMMEQEIMEAVNDNSAVIICGETGCGKTTQVPQFLFEAGFGSNRCSSRSGRIGVTQPRRVAVLATAKRVAFELGLHLG 114 (764)
Q Consensus 35 Pi~~~~~~Il~~l~~~~vviI~GeTGSGKTTqvPq~Lle~~~~~~~~~~~~~~Ii~tQPRRiaAisvA~RVa~E~g~~lG 114 (764)
....+|.+.+..+.++..++++|+||+|||.+...++.+.. .++++..|++.++.+..+++.+ + |
T Consensus 93 ~l~~~Q~~ai~~~~~~~~~ll~~~tG~GKT~~a~~~~~~~~----------~~~liv~P~~~L~~q~~~~~~~-~----~ 157 (237)
T 2fz4_A 93 SLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINELS----------TPTLIVVPTLALAEQWKERLGI-F----G 157 (237)
T ss_dssp CCCHHHHHHHHHHTTTSEEEEEESSSTTHHHHHHHHHHHSC----------SCEEEEESSHHHHHHHHHHHGG-G----C
T ss_pred CcCHHHHHHHHHHHhCCCEEEEeCCCCCHHHHHHHHHHHcC----------CCEEEEeCCHHHHHHHHHHHHh-C----C
Confidence 44677888888887777799999999999998777666531 4688889999988888777765 4 3
Q ss_pred CE-eeEEeccCcccCCCceEEEEchHHHHHHHHH--------HHHHHHHHHhhccccCCccCCCCceEEEeecccc
Q 038192 115 KE-VGFQVRHDKKIGDSCSIKFMTDGILLRELKA--------LYEKQQQLLRSGQCIEPKDRVFPLKLILMSATLR 181 (764)
Q Consensus 115 ~~-VGY~ir~e~~~s~~t~I~f~T~GiLLr~l~~--------i~de~~~~l~~~~~~~~~~~~~~lKlILMSATl~ 181 (764)
.. |+.-.+ .......|+++|.+.+.+.+.. |+||+|.+....+. .+....+..++++||||..
T Consensus 158 ~~~v~~~~g---~~~~~~~i~v~T~~~l~~~~~~~~~~~~llIiDEaH~l~~~~~~-~i~~~~~~~~~l~LSATp~ 229 (237)
T 2fz4_A 158 EEYVGEFSG---RIKELKPLTVSTYDSAYVNAEKLGNRFMLLIFDEVHHLPAESYV-QIAQMSIAPFRLGLTATFE 229 (237)
T ss_dssp GGGEEEESS---SCBCCCSEEEEEHHHHHHTHHHHTTTCSEEEEECSSCCCTTTHH-HHHHTCCCSEEEEEEESCC
T ss_pred CCeEEEEeC---CCCCcCCEEEEeHHHHHhhHHHhcccCCEEEEECCccCCChHHH-HHHHhccCCEEEEEecCCC
Confidence 33 443222 1234578999999999887643 34676653222111 1112234678899999984
No 90
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=98.53 E-value=3.9e-07 Score=105.03 Aligned_cols=54 Identities=13% Similarity=0.188 Sum_probs=40.7
Q ss_pred HHHHHHcCCeEEEEecCCCCccccHHHHHHHhccCCCCCCCCCceEEEecccHHHHHHHHHHHH
Q 038192 43 IMEAVNDNSAVIICGETGCGKTTQVPQFLFEAGFGSNRCSSRSGRIGVTQPRRVAVLATAKRVA 106 (764)
Q Consensus 43 Il~~l~~~~vviI~GeTGSGKTTqvPq~Lle~~~~~~~~~~~~~~Ii~tQPRRiaAisvA~RVa 106 (764)
+.+++.+++.+++.++||+|||...-...+..+ .++++.-|++..+.++.+.+.
T Consensus 19 v~~~~~~~~~~~~~a~TGtGKT~~~l~~~~~~~----------~~~~~~~~t~~l~~q~~~~~~ 72 (540)
T 2vl7_A 19 AINALKHGKTLLLNAKPGLGKTVFVEVLGMQLK----------KKVLIFTRTHSQLDSIYKNAK 72 (540)
T ss_dssp HHHHHHTTCEEEEECCTTSCHHHHHHHHHHHHT----------CEEEEEESCHHHHHHHHHHHG
T ss_pred HHHHHHcCCCEEEEcCCCCcHHHHHHHHHHhCC----------CcEEEEcCCHHHHHHHHHHHH
Confidence 456778889999999999999965433333321 589999999999988876543
No 91
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=98.51 E-value=3.6e-08 Score=103.54 Aligned_cols=85 Identities=14% Similarity=0.144 Sum_probs=58.2
Q ss_pred eEEEecCCCCCHHHHHhhhccCCCC-ceE-EEEecCcccccCCCCCeEEEEeCCcccceeeccCCCccccceeeccHHhH
Q 038192 437 LCVLPLYAMLPAAAQLRVFEDVKEG-ERL-VVVSTNVAETSLTIPGIKYVVDTGREKVKKYNSANGIESYEIQWISKASA 514 (764)
Q Consensus 437 ~~i~pLHs~l~~~eQ~~vf~~~~~g-~rK-VIlsTNIAEtSITIpdV~~VID~G~~K~~~yd~~~~~~~l~~~~iSkasa 514 (764)
+.+..+||+++.++|.++++.|..| ..+ +++||+++.+||+++++.+||. ||+..+... +
T Consensus 138 ~~~~~l~G~~~~~~R~~~i~~F~~~~~~~v~L~st~~~g~Glnl~~a~~VI~--------~d~~wnp~~----------~ 199 (271)
T 1z5z_A 138 TEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSVKAGGFGINLTSANRVIH--------FDRWWNPAV----------E 199 (271)
T ss_dssp SCCCEECTTSCHHHHHHHHHHHHHCTTCCEEEEECCTTCCCCCCTTCSEEEE--------CSCCSCTTT----------C
T ss_pred CcEEEEECCCCHHHHHHHHHHhcCCCCCCEEEEehhhhcCCcCcccCCEEEE--------ECCCCChhH----------H
Confidence 3466789999999999999988766 444 7899999999999999999996 676555443 4
Q ss_pred HHhccccCCCCC---CEEEEccCHHHhc
Q 038192 515 AQRAGRAGRTAP---GHCYRLYSSAVFN 539 (764)
Q Consensus 515 ~QR~GRAGR~~~---G~cyrLys~~~~~ 539 (764)
.||.||++|.|. -..|+|++....+
T Consensus 200 ~Q~~gR~~R~Gq~~~v~v~~li~~~TiE 227 (271)
T 1z5z_A 200 DQATDRVYRIGQTRNVIVHKLISVGTLE 227 (271)
T ss_dssp --------------CCEEEEEEETTSHH
T ss_pred HHHHHhccccCCCCceEEEEEeeCCCHH
Confidence 499999988764 5679999876554
No 92
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=97.83 E-value=1.2e-05 Score=95.05 Aligned_cols=102 Identities=15% Similarity=0.076 Sum_probs=68.6
Q ss_pred CCchhhHHHHHHHHHcCCeEEEEecCCCCccccHHHHHHHhccCCCCCCCCCceEEEecccHHHHHHHHHHHHHHhCCCC
Q 038192 34 LPIVMMEQEIMEAVNDNSAVIICGETGCGKTTQVPQFLFEAGFGSNRCSSRSGRIGVTQPRRVAVLATAKRVAFELGLHL 113 (764)
Q Consensus 34 LPi~~~~~~Il~~l~~~~vviI~GeTGSGKTTqvPq~Lle~~~~~~~~~~~~~~Ii~tQPRRiaAisvA~RVa~E~g~~l 113 (764)
-|...+...|+- +.+++ |..+.||||||..+...++-..... ..+.|.-|+|.+|.+.++.+. .+...+
T Consensus 79 ~Pt~VQ~~~ip~-LlqG~--IaeakTGeGKTLvf~Lp~~L~aL~G-------~qv~VvTPTreLA~Qdae~m~-~l~~~l 147 (997)
T 2ipc_A 79 RHFDVQLIGGAV-LHEGK--IAEMKTGEGKTLVATLAVALNALTG-------KGVHVVTVNDYLARRDAEWMG-PVYRGL 147 (997)
T ss_dssp CCCHHHHHHHHH-HHTTS--EEECCSTHHHHHHHHHHHHHHHTTC-------SCCEEEESSHHHHHHHHHHHH-HHHHTT
T ss_pred CCcHHHHhhccc-ccCCc--eeeccCCCchHHHHHHHHHHHHHhC-------CCEEEEeCCHHHHHHHHHHHH-HHHHhc
Confidence 354445555554 45555 8899999999987655554433321 257788899999999888544 344567
Q ss_pred CCEeeEEeccCcc----cCCCceEEEEchHHH-HHHHH
Q 038192 114 GKEVGFQVRHDKK----IGDSCSIKFMTDGIL-LRELK 146 (764)
Q Consensus 114 G~~VGY~ir~e~~----~s~~t~I~f~T~GiL-Lr~l~ 146 (764)
|-+||.-+...+. ....++|+|+|+|.| ++.|+
T Consensus 148 GLsv~~i~Gg~~~~~r~~ay~~DIvyGTpgrlgfDyLr 185 (997)
T 2ipc_A 148 GLSVGVIQHASTPAERRKAYLADVTYVTNSELGFDYLR 185 (997)
T ss_dssp TCCEEECCTTCCHHHHHHHHTSSEEEEEHHHHHHHHHH
T ss_pred CCeEEEEeCCCCHHHHHHHcCCCEEEECchhhhhHHHH
Confidence 7778876554321 112578999999999 67663
No 93
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=97.13 E-value=0.00028 Score=81.29 Aligned_cols=52 Identities=17% Similarity=0.201 Sum_probs=40.9
Q ss_pred HHHHHHHcCCeEEEEecCCCCccccHHHHHHHhccCCCCCCCCCceEEEecccHHHHHHHHH
Q 038192 42 EIMEAVNDNSAVIICGETGCGKTTQVPQFLFEAGFGSNRCSSRSGRIGVTQPRRVAVLATAK 103 (764)
Q Consensus 42 ~Il~~l~~~~vviI~GeTGSGKTTqvPq~Lle~~~~~~~~~~~~~~Ii~tQPRRiaAisvA~ 103 (764)
.+.+++.+++.+++.++||+|||...-..++.. ..++++.-|+|..+.++.+
T Consensus 14 ~v~~~l~~~~~~~~~a~TGtGKT~~~l~p~l~~----------~~~v~i~~pt~~l~~q~~~ 65 (551)
T 3crv_A 14 KVIEGLRNNFLVALNAPTGSGKTLFSLLVSLEV----------KPKVLFVVRTHNEFYPIYR 65 (551)
T ss_dssp HHHHHHHTTCEEEEECCTTSSHHHHHHHHHHHH----------CSEEEEEESSGGGHHHHHH
T ss_pred HHHHHHHcCCcEEEECCCCccHHHHHHHHHHhC----------CCeEEEEcCCHHHHHHHHH
Confidence 355567788999999999999998765555552 1589999999999888875
No 94
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=96.65 E-value=0.0021 Score=75.43 Aligned_cols=63 Identities=25% Similarity=0.360 Sum_probs=51.8
Q ss_pred hhHHHHHHHHHcCCeEEEEecCCCCccccHHHHHHHhccCCCCCCCCCceEEEecccHHHHHHHHHHHHH
Q 038192 38 MMEQEIMEAVNDNSAVIICGETGCGKTTQVPQFLFEAGFGSNRCSSRSGRIGVTQPRRVAVLATAKRVAF 107 (764)
Q Consensus 38 ~~~~~Il~~l~~~~vviI~GeTGSGKTTqvPq~Lle~~~~~~~~~~~~~~Ii~tQPRRiaAisvA~RVa~ 107 (764)
.++++|..++..+++.+|.|++|||||+.+-..|...... ..+|+++-|+-.||-.+++|++.
T Consensus 193 ~Q~~AV~~al~~~~~~lI~GPPGTGKT~ti~~~I~~l~~~-------~~~ILv~a~TN~AvD~i~erL~~ 255 (646)
T 4b3f_X 193 SQKEAVLFALSQKELAIIHGPPGTGKTTTVVEIILQAVKQ-------GLKVLCCAPSNIAVDNLVERLAL 255 (646)
T ss_dssp HHHHHHHHHHHCSSEEEEECCTTSCHHHHHHHHHHHHHHT-------TCCEEEEESSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCceEEECCCCCCHHHHHHHHHHHHHhC-------CCeEEEEcCchHHHHHHHHHHHh
Confidence 4566777778888899999999999999888877664422 14899999999999999999974
No 95
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=95.69 E-value=0.012 Score=68.35 Aligned_cols=63 Identities=21% Similarity=0.228 Sum_probs=43.7
Q ss_pred HHHHHHHHHcCCeEEEEecCCCCccccHHHHHH--HhccCCCCCCCCCceEEEecccHHHHHHHHHHHHH
Q 038192 40 EQEIMEAVNDNSAVIICGETGCGKTTQVPQFLF--EAGFGSNRCSSRSGRIGVTQPRRVAVLATAKRVAF 107 (764)
Q Consensus 40 ~~~Il~~l~~~~vviI~GeTGSGKTTqvPq~Ll--e~~~~~~~~~~~~~~Ii~tQPRRiaAisvA~RVa~ 107 (764)
+.+.+..+..+++++|+|++||||||.+-..+. ...... ...+|+++-|++.||..+++.+..
T Consensus 154 Q~~Ai~~~l~~~~~vi~G~pGTGKTt~l~~ll~~l~~~~~~-----~~~~vll~APTg~AA~~L~e~~~~ 218 (608)
T 1w36_D 154 QKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMADG-----ERCRIRLAAPTGKAAARLTESLGK 218 (608)
T ss_dssp HHHHHHHHHTBSEEEEECCTTSTHHHHHHHHHHHHHHTCSS-----CCCCEEEEBSSHHHHHHHHHHHTH
T ss_pred HHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHHHhhhc-----CCCeEEEEeCChhHHHHHHHHHHH
Confidence 444555555788999999999999987544332 221111 125899999999999988876543
No 96
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=95.35 E-value=0.022 Score=66.43 Aligned_cols=65 Identities=18% Similarity=0.260 Sum_probs=49.2
Q ss_pred hhhHHHHHHHHHcCCeEEEEecCCCCccccHHHHHHHhccCCCCCCCCCceEEEecccHHHHHHHHHHHHH
Q 038192 37 VMMEQEIMEAVNDNSAVIICGETGCGKTTQVPQFLFEAGFGSNRCSSRSGRIGVTQPRRVAVLATAKRVAF 107 (764)
Q Consensus 37 ~~~~~~Il~~l~~~~vviI~GeTGSGKTTqvPq~Lle~~~~~~~~~~~~~~Ii~tQPRRiaAisvA~RVa~ 107 (764)
...+.+.+..+..+.+++|.|++||||||.+-..+....... ..+|+++-|+..||-.+.+|+..
T Consensus 182 n~~Q~~av~~~l~~~~~li~GppGTGKT~~~~~~i~~l~~~~------~~~ilv~a~tn~A~~~l~~~l~~ 246 (624)
T 2gk6_A 182 NHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSATIVYHLARQG------NGPVLVCAPSNIAVDQLTEKIHQ 246 (624)
T ss_dssp CHHHHHHHHHHHTCSEEEEECCTTSCHHHHHHHHHHHHHTSS------SCCEEEEESSHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHhcCCCeEEECCCCCCHHHHHHHHHHHHHHcC------CCeEEEEeCcHHHHHHHHHHHHh
Confidence 345556666666788999999999999998766554332111 25899999999999999999864
No 97
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=94.80 E-value=0.038 Score=66.20 Aligned_cols=65 Identities=18% Similarity=0.260 Sum_probs=48.6
Q ss_pred hhhHHHHHHHHHcCCeEEEEecCCCCccccHHHHHHHhccCCCCCCCCCceEEEecccHHHHHHHHHHHHH
Q 038192 37 VMMEQEIMEAVNDNSAVIICGETGCGKTTQVPQFLFEAGFGSNRCSSRSGRIGVTQPRRVAVLATAKRVAF 107 (764)
Q Consensus 37 ~~~~~~Il~~l~~~~vviI~GeTGSGKTTqvPq~Lle~~~~~~~~~~~~~~Ii~tQPRRiaAisvA~RVa~ 107 (764)
...+.+.+..+..+++++|.|++||||||.+-..+....... ..+|+++-|+..||-.+++|+..
T Consensus 358 n~~Q~~Av~~~l~~~~~lI~GppGTGKT~ti~~~i~~l~~~~------~~~ilv~a~tn~A~~~l~~~l~~ 422 (800)
T 2wjy_A 358 NHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSATIVYHLARQG------NGPVLVCAPSNIAVDQLTEKIHQ 422 (800)
T ss_dssp CHHHHHHHHHHHTSSEEEEECCTTSCHHHHHHHHHHHHHTTC------SSCEEEEESSHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHhccCCeEEEEcCCCCCHHHHHHHHHHHHHHcC------CCcEEEEcCcHHHHHHHHHHHHH
Confidence 344555666666788999999999999998766554322111 25899999999999999999864
No 98
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=94.72 E-value=0.027 Score=67.54 Aligned_cols=64 Identities=23% Similarity=0.248 Sum_probs=48.8
Q ss_pred hhHHHHHHHHHcCCeEEEEecCCCCccccHHHHHHHhccCCCCCCCCCceEEEecccHHHHHHHHHHHHH
Q 038192 38 MMEQEIMEAVNDNSAVIICGETGCGKTTQVPQFLFEAGFGSNRCSSRSGRIGVTQPRRVAVLATAKRVAF 107 (764)
Q Consensus 38 ~~~~~Il~~l~~~~vviI~GeTGSGKTTqvPq~Lle~~~~~~~~~~~~~~Ii~tQPRRiaAisvA~RVa~ 107 (764)
..|.+.+..+..+.+++|.|++||||||.+-..+....... ..+|+++-|+..||-.+++|+..
T Consensus 363 ~~Q~~Av~~~l~~~~~lI~GppGTGKT~~i~~~i~~l~~~~------~~~ILv~a~tn~A~d~l~~rL~~ 426 (802)
T 2xzl_A 363 SSQSNAVSHVLQRPLSLIQGPPGTGKTVTSATIVYHLSKIH------KDRILVCAPSNVAVDHLAAKLRD 426 (802)
T ss_dssp HHHHHHHHHHTTCSEEEEECSTTSSHHHHHHHHHHHHHHHH------CCCEEEEESSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCEEEECCCCCCHHHHHHHHHHHHHhCC------CCeEEEEcCcHHHHHHHHHHHHh
Confidence 45666667776788999999999999987665554321101 14899999999999999999975
No 99
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=94.29 E-value=0.043 Score=63.94 Aligned_cols=59 Identities=12% Similarity=0.050 Sum_probs=42.7
Q ss_pred HHHHHHHHcCCeEEEEecCCCCccccHHHHHHHhccCCCCCCCCCceEEEecccHHHHHHHHHHH
Q 038192 41 QEIMEAVNDNSAVIICGETGCGKTTQVPQFLFEAGFGSNRCSSRSGRIGVTQPRRVAVLATAKRV 105 (764)
Q Consensus 41 ~~Il~~l~~~~vviI~GeTGSGKTTqvPq~Lle~~~~~~~~~~~~~~Ii~tQPRRiaAisvA~RV 105 (764)
+++.+++.++..+++.++||+|||...-..++...... ..+|++.-|++..+.++.+-+
T Consensus 13 ~~v~~~l~~~~~~~~~apTGtGKT~a~l~p~l~~~~~~------~~kvli~t~T~~l~~Qi~~el 71 (620)
T 4a15_A 13 DFLRSSLQKSYGVALESPTGSGKTIMALKSALQYSSER------KLKVLYLVRTNSQEEQVIKEL 71 (620)
T ss_dssp HHHHHHHHHSSEEEEECCTTSCHHHHHHHHHHHHHHHH------TCEEEEEESSHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCEEEECCCCCCHHHHHHHHHHHhhhhc------CCeEEEECCCHHHHHHHHHHH
Confidence 45667888999999999999999976444444332111 148899999999888876544
No 100
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=94.10 E-value=0.082 Score=59.11 Aligned_cols=54 Identities=22% Similarity=0.221 Sum_probs=37.6
Q ss_pred HHHcCC-eEEEEecCCCCccccHHHHHHHhccCCCCCCCCCceEEEecccHHHHHHHHHHH
Q 038192 46 AVNDNS-AVIICGETGCGKTTQVPQFLFEAGFGSNRCSSRSGRIGVTQPRRVAVLATAKRV 105 (764)
Q Consensus 46 ~l~~~~-vviI~GeTGSGKTTqvPq~Lle~~~~~~~~~~~~~~Ii~tQPRRiaAisvA~RV 105 (764)
.+.+++ +++|.|+.||||||.+-..+.... ..+. ..|+++-|+..||..+.+++
T Consensus 40 ~i~~~~~~~li~G~aGTGKT~ll~~~~~~l~-~~~~-----~~il~~a~T~~Aa~~l~~~~ 94 (459)
T 3upu_A 40 AIKEKKHHVTINGPAGTGATTLTKFIIEALI-STGE-----TGIILAAPTHAAKKILSKLS 94 (459)
T ss_dssp HHHSSSCEEEEECCTTSCHHHHHHHHHHHHH-HTTC-----CCEEEEESSHHHHHHHHHHH
T ss_pred HHhcCCCEEEEEeCCCCCHHHHHHHHHHHHH-hcCC-----ceEEEecCcHHHHHHHHhhh
Confidence 334344 999999999999987655443221 1111 36899999999998887766
No 101
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=94.02 E-value=0.069 Score=61.57 Aligned_cols=63 Identities=16% Similarity=0.238 Sum_probs=46.6
Q ss_pred chhhHHHHHHHHHcCCeEEEEecCCCCccccHHHHHHHhccCCCCCCCCCceEEEecccHHHHHHHHHHH
Q 038192 36 IVMMEQEIMEAVNDNSAVIICGETGCGKTTQVPQFLFEAGFGSNRCSSRSGRIGVTQPRRVAVLATAKRV 105 (764)
Q Consensus 36 i~~~~~~Il~~l~~~~vviI~GeTGSGKTTqvPq~Lle~~~~~~~~~~~~~~Ii~tQPRRiaAisvA~RV 105 (764)
....+.+.+..+..+.+++|+|+.||||||.+-..+.... ..+ .+|+++-|+..||..+.+++
T Consensus 190 L~~~Q~~Av~~~~~~~~~~I~G~pGTGKTt~i~~l~~~l~-~~g------~~Vl~~ApT~~Aa~~L~e~~ 252 (574)
T 3e1s_A 190 LSEEQASVLDQLAGHRLVVLTGGPGTGKSTTTKAVADLAE-SLG------LEVGLCAPTGKAARRLGEVT 252 (574)
T ss_dssp CCHHHHHHHHHHTTCSEEEEECCTTSCHHHHHHHHHHHHH-HTT------CCEEEEESSHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhCCEEEEEcCCCCCHHHHHHHHHHHHH-hcC------CeEEEecCcHHHHHHhHhhh
Confidence 4566777888888899999999999999997655443221 111 47889999999887776644
No 102
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=93.12 E-value=0.34 Score=57.88 Aligned_cols=77 Identities=21% Similarity=0.288 Sum_probs=51.1
Q ss_pred eEEEeecccc--hhhhccccCCCCCCCeeeeCCcc------cceeEEecCCCchhhHHHHHHHHHHHHhhcCCCCCeEEe
Q 038192 172 KLILMSATLR--VEDFISGGRLFRNPPIIEVPTRQ------FPVTVHFSKRTEIVDYIGQAYKKVMSIHKRLPQGGILVF 243 (764)
Q Consensus 172 KlILMSATl~--~~~f~~~~~~f~~~~vi~i~gr~------~pV~~~y~~~~~~~d~l~~~~~~v~~i~~~~~~g~ilvF 243 (764)
||--|+.|.. .+.|. +.+ +..|+.||.-. +|-.+ |.. ......+.+..+...|.. ..-+||+
T Consensus 380 kLsGMTGTA~tE~~Ef~---~iY-~l~Vv~IPTn~p~~R~D~~d~v-y~t---~~~K~~AIv~eI~~~~~~--GqPVLVg 449 (997)
T 2ipc_A 380 KRAGMTGTAKTEEKEFQ---EIY-GMDVVVVPTNRPVIRKDFPDVV-YRT---EKGKFYAVVEEIAEKYER--GQPVLVG 449 (997)
T ss_dssp EEEEEESSCGGGHHHHH---HHH-CCCEEECCCSSCCCCEEEEEEE-ESS---HHHHHHHHHHHHHHHHHH--TCCEEEE
T ss_pred HheecCCCchHHHHHHH---HHh-CCCEEEcCCCCCcccccCCCeE-EcC---HHHHHHHHHHHHHHHHHC--CCCEEEE
Confidence 8999999994 34555 344 35678888631 33333 321 144455566667777754 3359999
Q ss_pred cCCHHHHHHHHHHHH
Q 038192 244 VTGQREVEYLCSKLR 258 (764)
Q Consensus 244 ~~g~~~ie~l~~~L~ 258 (764)
+++-++.|.+.+.|.
T Consensus 450 T~SIe~SE~LS~~L~ 464 (997)
T 2ipc_A 450 TISIEKSERLSQMLK 464 (997)
T ss_dssp CSSHHHHHHHHHHHH
T ss_pred eCCHHHHHHHHHHHh
Confidence 999999999988887
No 103
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=92.95 E-value=0.061 Score=53.61 Aligned_cols=32 Identities=25% Similarity=0.321 Sum_probs=26.9
Q ss_pred hHHHHHHHHHcCCeEEEEecCCCCccccHHHH
Q 038192 39 MEQEIMEAVNDNSAVIICGETGCGKTTQVPQF 70 (764)
Q Consensus 39 ~~~~Il~~l~~~~vviI~GeTGSGKTTqvPq~ 70 (764)
.+..+++.+..+.++.|.|+.||||||.+=..
T Consensus 11 g~~~~l~~i~~Ge~~~liG~nGsGKSTLl~~l 42 (208)
T 3b85_A 11 GQKHYVDAIDTNTIVFGLGPAGSGKTYLAMAK 42 (208)
T ss_dssp HHHHHHHHHHHCSEEEEECCTTSSTTHHHHHH
T ss_pred hHHHHHHhccCCCEEEEECCCCCCHHHHHHHH
Confidence 34568888999999999999999999986544
No 104
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=92.90 E-value=0.15 Score=59.22 Aligned_cols=69 Identities=17% Similarity=0.105 Sum_probs=47.2
Q ss_pred hhHHHHHHHHHcCCeEEEEecCCCCccccHHHHHHHhccCCCCCCCCCceEEEecccHHHHHHHHHHHHHHhCC
Q 038192 38 MMEQEIMEAVNDNSAVIICGETGCGKTTQVPQFLFEAGFGSNRCSSRSGRIGVTQPRRVAVLATAKRVAFELGL 111 (764)
Q Consensus 38 ~~~~~Il~~l~~~~vviI~GeTGSGKTTqvPq~Lle~~~~~~~~~~~~~~Ii~tQPRRiaAisvA~RVa~E~g~ 111 (764)
..|.+++.. .+..++|.|..||||||.+-.-+.......+ ..+.+|+++-+++-||..+.+|+....|.
T Consensus 12 ~~Q~~av~~--~~~~~lV~a~aGsGKT~~l~~ri~~l~~~~~---~~~~~iL~ltft~~aa~e~~~rl~~~~~~ 80 (647)
T 3lfu_A 12 DKQREAVAA--PRSNLLVLAGAGSGKTRVLVHRIAWLMSVEN---CSPYSIMAVTFTNKAAAEMRHRIGQLMGT 80 (647)
T ss_dssp HHHHHHHTC--CSSCEEEEECTTSCHHHHHHHHHHHHHHTSC---CCGGGEEEEESSHHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHhC--CCCCEEEEECCCCCHHHHHHHHHHHHHHhCC---CChhhEEEEeccHHHHHHHHHHHHHHhcc
Confidence 344455542 3456889999999999987654432211111 12358999999999999999999987764
No 105
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=90.71 E-value=0.07 Score=52.04 Aligned_cols=24 Identities=33% Similarity=0.537 Sum_probs=19.2
Q ss_pred HHcCCeEEEEecCCCCccccHHHH
Q 038192 47 VNDNSAVIICGETGCGKTTQVPQF 70 (764)
Q Consensus 47 l~~~~vviI~GeTGSGKTTqvPq~ 70 (764)
+..+.++.|.|++||||||.+=..
T Consensus 4 m~~g~ii~l~Gp~GsGKSTl~~~L 27 (205)
T 3tr0_A 4 MNKANLFIISAPSGAGKTSLVRAL 27 (205)
T ss_dssp -CCCCEEEEECCTTSCHHHHHHHH
T ss_pred CCCCcEEEEECcCCCCHHHHHHHH
Confidence 346789999999999999976543
No 106
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=90.63 E-value=0.079 Score=51.05 Aligned_cols=22 Identities=14% Similarity=0.356 Sum_probs=18.5
Q ss_pred cCCeEEEEecCCCCccccHHHH
Q 038192 49 DNSAVIICGETGCGKTTQVPQF 70 (764)
Q Consensus 49 ~~~vviI~GeTGSGKTTqvPq~ 70 (764)
.+.+++|+|++||||||.+=..
T Consensus 4 ~g~~i~i~GpsGsGKSTL~~~L 25 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIKNTL 25 (180)
T ss_dssp CCCEEEEECCTTSSHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHH
Confidence 4678999999999999987554
No 107
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=90.55 E-value=0.11 Score=52.24 Aligned_cols=41 Identities=20% Similarity=0.182 Sum_probs=30.3
Q ss_pred HcCCeEEEEecCCCCccccHHHHHHHhccCCCCCCCCCceEEEecccH
Q 038192 48 NDNSAVIICGETGCGKTTQVPQFLFEAGFGSNRCSSRSGRIGVTQPRR 95 (764)
Q Consensus 48 ~~~~vviI~GeTGSGKTTqvPq~Lle~~~~~~~~~~~~~~Ii~tQPRR 95 (764)
..+.+++++|++||||||.+-+.+....... .++++.+|..
T Consensus 10 ~~G~i~litG~mGsGKTT~ll~~~~r~~~~g-------~kVli~~~~~ 50 (223)
T 2b8t_A 10 KIGWIEFITGPMFAGKTAELIRRLHRLEYAD-------VKYLVFKPKI 50 (223)
T ss_dssp -CCEEEEEECSTTSCHHHHHHHHHHHHHHTT-------CCEEEEEECC
T ss_pred CCcEEEEEECCCCCcHHHHHHHHHHHHHhcC-------CEEEEEEecc
Confidence 3457899999999999999999987754321 3566777753
No 108
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=90.14 E-value=0.066 Score=55.28 Aligned_cols=24 Identities=25% Similarity=0.537 Sum_probs=20.4
Q ss_pred HHcCCeEEEEecCCCCccccHHHH
Q 038192 47 VNDNSAVIICGETGCGKTTQVPQF 70 (764)
Q Consensus 47 l~~~~vviI~GeTGSGKTTqvPq~ 70 (764)
+..+.++.|+|+|||||||.+=..
T Consensus 22 i~~g~~v~i~Gp~GsGKSTll~~l 45 (261)
T 2eyu_A 22 HRKMGLILVTGPTGSGKSTTIASM 45 (261)
T ss_dssp GCSSEEEEEECSTTCSHHHHHHHH
T ss_pred hCCCCEEEEECCCCccHHHHHHHH
Confidence 677889999999999999986543
No 109
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=90.06 E-value=0.16 Score=48.54 Aligned_cols=22 Identities=23% Similarity=0.391 Sum_probs=18.2
Q ss_pred cCCeEEEEecCCCCccccHHHH
Q 038192 49 DNSAVIICGETGCGKTTQVPQF 70 (764)
Q Consensus 49 ~~~vviI~GeTGSGKTTqvPq~ 70 (764)
.++.+++.|++||||||.+=.+
T Consensus 37 ~g~~~~l~G~~G~GKTtL~~~i 58 (180)
T 3ec2_A 37 EGKGLTFVGSPGVGKTHLAVAT 58 (180)
T ss_dssp GCCEEEECCSSSSSHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHH
Confidence 4688999999999999876443
No 110
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=89.98 E-value=0.13 Score=58.49 Aligned_cols=29 Identities=31% Similarity=0.438 Sum_probs=23.4
Q ss_pred HHHHHHHHcCCeEEEEecCCCCccccHHH
Q 038192 41 QEIMEAVNDNSAVIICGETGCGKTTQVPQ 69 (764)
Q Consensus 41 ~~Il~~l~~~~vviI~GeTGSGKTTqvPq 69 (764)
+.+--++..+.+++|+|+|||||||.+=.
T Consensus 251 ~~l~~~v~~g~~i~I~GptGSGKTTlL~a 279 (511)
T 2oap_1 251 AYLWLAIEHKFSAIVVGETASGKTTTLNA 279 (511)
T ss_dssp HHHHHHHHTTCCEEEEESTTSSHHHHHHH
T ss_pred HHHHHHHhCCCEEEEECCCCCCHHHHHHH
Confidence 34445678888999999999999998754
No 111
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=89.86 E-value=0.091 Score=51.22 Aligned_cols=23 Identities=22% Similarity=0.410 Sum_probs=18.9
Q ss_pred HHcCCeEEEEecCCCCccccHHH
Q 038192 47 VNDNSAVIICGETGCGKTTQVPQ 69 (764)
Q Consensus 47 l~~~~vviI~GeTGSGKTTqvPq 69 (764)
+..+.+++|.|++||||||+.=.
T Consensus 3 i~~g~~i~l~G~~GsGKSTl~~~ 25 (207)
T 2j41_A 3 NEKGLLIVLSGPSGVGKGTVRKR 25 (207)
T ss_dssp -CCCCEEEEECSTTSCHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHH
Confidence 45678899999999999998754
No 112
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=89.76 E-value=0.1 Score=51.43 Aligned_cols=24 Identities=25% Similarity=0.382 Sum_probs=18.8
Q ss_pred HHHcCCeEEEEecCCCCccccHHH
Q 038192 46 AVNDNSAVIICGETGCGKTTQVPQ 69 (764)
Q Consensus 46 ~l~~~~vviI~GeTGSGKTTqvPq 69 (764)
.+..+.++.|.|++||||||.+=.
T Consensus 16 ~i~~Gei~~l~GpnGsGKSTLl~~ 39 (207)
T 1znw_A 16 PAAVGRVVVLSGPSAVGKSTVVRC 39 (207)
T ss_dssp ---CCCEEEEECSTTSSHHHHHHH
T ss_pred CCCCCCEEEEECCCCCCHHHHHHH
Confidence 578899999999999999997643
No 113
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=89.66 E-value=0.15 Score=47.16 Aligned_cols=26 Identities=31% Similarity=0.447 Sum_probs=19.2
Q ss_pred HHHHHHHHHcCCeEEEEecCCCCccc
Q 038192 40 EQEIMEAVNDNSAVIICGETGCGKTT 65 (764)
Q Consensus 40 ~~~Il~~l~~~~vviI~GeTGSGKTT 65 (764)
++.+-.+...+..|+|.|++|||||+
T Consensus 17 ~~~~~~~~~~~~~vll~G~~GtGKt~ 42 (143)
T 3co5_A 17 NREVEAAAKRTSPVFLTGEAGSPFET 42 (143)
T ss_dssp HHHHHHHHTCSSCEEEEEETTCCHHH
T ss_pred HHHHHHHhCCCCcEEEECCCCccHHH
Confidence 33444445566779999999999995
No 114
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=89.65 E-value=0.25 Score=54.79 Aligned_cols=55 Identities=15% Similarity=0.133 Sum_probs=38.2
Q ss_pred CeEEEEecCCCCccccHHHHHHHhccCCCCCCCCCceEEEecccHHHHHHHHHHHHHHhC
Q 038192 51 SAVIICGETGCGKTTQVPQFLFEAGFGSNRCSSRSGRIGVTQPRRVAVLATAKRVAFELG 110 (764)
Q Consensus 51 ~vviI~GeTGSGKTTqvPq~Lle~~~~~~~~~~~~~~Ii~tQPRRiaAisvA~RVa~E~g 110 (764)
.|++++|.+|+||||.+-.......... ....++.+.|.|.+|+.-.+..+...|
T Consensus 101 ~vIlivG~~G~GKTTt~~kLA~~l~~~G-----~kVllv~~D~~R~aa~eqL~~~~~~~g 155 (443)
T 3dm5_A 101 TILLMVGIQGSGKTTTVAKLARYFQKRG-----YKVGVVCSDTWRPGAYHQLRQLLDRYH 155 (443)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHTTT-----CCEEEEECCCSSTHHHHHHHHHHGGGT
T ss_pred eEEEEECcCCCCHHHHHHHHHHHHHHCC-----CeEEEEeCCCcchhHHHHHHHHHHhcC
Confidence 5889999999999998666543322111 125678889999998776665655444
No 115
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=89.07 E-value=0.073 Score=50.93 Aligned_cols=22 Identities=32% Similarity=0.534 Sum_probs=19.0
Q ss_pred HcCCeEEEEecCCCCccccHHH
Q 038192 48 NDNSAVIICGETGCGKTTQVPQ 69 (764)
Q Consensus 48 ~~~~vviI~GeTGSGKTTqvPq 69 (764)
..+.++.+.|++||||||.+=.
T Consensus 7 ~~gei~~l~G~nGsGKSTl~~~ 28 (171)
T 4gp7_A 7 PELSLVVLIGSSGSGKSTFAKK 28 (171)
T ss_dssp ESSEEEEEECCTTSCHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHH
Confidence 4577899999999999998765
No 116
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=89.05 E-value=0.082 Score=50.97 Aligned_cols=25 Identities=20% Similarity=0.388 Sum_probs=19.9
Q ss_pred HHHcCCeEEEEecCCCCccccHHHH
Q 038192 46 AVNDNSAVIICGETGCGKTTQVPQF 70 (764)
Q Consensus 46 ~l~~~~vviI~GeTGSGKTTqvPq~ 70 (764)
.+..+.+++|.|+.||||||..-..
T Consensus 5 ~i~~g~~i~l~G~~GsGKSTl~~~L 29 (191)
T 1zp6_A 5 DDLGGNILLLSGHPGSGKSTIAEAL 29 (191)
T ss_dssp -CCTTEEEEEEECTTSCHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHH
Confidence 3556788999999999999976543
No 117
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=88.96 E-value=0.11 Score=50.96 Aligned_cols=22 Identities=27% Similarity=0.611 Sum_probs=17.2
Q ss_pred cCCeEEEEecCCCCccccHHHH
Q 038192 49 DNSAVIICGETGCGKTTQVPQF 70 (764)
Q Consensus 49 ~~~vviI~GeTGSGKTTqvPq~ 70 (764)
.++.++|.|++||||||.+=..
T Consensus 3 ~g~~i~lvGpsGaGKSTLl~~L 24 (198)
T 1lvg_A 3 GPRPVVLSGPSGAGKSTLLKKL 24 (198)
T ss_dssp --CCEEEECCTTSSHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHH
Confidence 4678999999999999986544
No 118
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=88.88 E-value=0.16 Score=47.12 Aligned_cols=31 Identities=23% Similarity=0.452 Sum_probs=21.3
Q ss_pred HHHHHHcCCeEEEEecCCCCccccHHHHHHHh
Q 038192 43 IMEAVNDNSAVIICGETGCGKTTQVPQFLFEA 74 (764)
Q Consensus 43 Il~~l~~~~vviI~GeTGSGKTTqvPq~Lle~ 74 (764)
+-.+...+..|+|.|++|||||+.. +.|.+.
T Consensus 17 ~~~~a~~~~~vll~G~~GtGKt~lA-~~i~~~ 47 (145)
T 3n70_A 17 LQQLSETDIAVWLYGAPGTGRMTGA-RYLHQF 47 (145)
T ss_dssp HHHHTTCCSCEEEESSTTSSHHHHH-HHHHHS
T ss_pred HHHHhCCCCCEEEECCCCCCHHHHH-HHHHHh
Confidence 3333455667899999999999644 455543
No 119
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19
Probab=88.70 E-value=0.37 Score=56.41 Aligned_cols=64 Identities=22% Similarity=0.311 Sum_probs=46.3
Q ss_pred hHHHHHHHHHcCCeEEEEecCCCCccccHHHH---HHHh-ccCCCCCCCCCceEEEecccHHHHHHHHHHHHHHhCC
Q 038192 39 MEQEIMEAVNDNSAVIICGETGCGKTTQVPQF---LFEA-GFGSNRCSSRSGRIGVTQPRRVAVLATAKRVAFELGL 111 (764)
Q Consensus 39 ~~~~Il~~l~~~~vviI~GeTGSGKTTqvPq~---Lle~-~~~~~~~~~~~~~Ii~tQPRRiaAisvA~RVa~E~g~ 111 (764)
.|.+++.. .+..++|.|..|||||+.+-.- +++. +. .+.+|+++-.++-||..+.+|+....+.
T Consensus 6 ~Q~~av~~--~~~~~lV~AgaGSGKT~~l~~ri~~ll~~~~~-------~~~~IL~lTfT~~Aa~em~~Rl~~~l~~ 73 (673)
T 1uaa_A 6 GQQQAVEF--VTGPCLVLAGAGSGKTRVITNKIAHLIRGCGY-------QARHIAAVTFTNKAAREMKERVGQTLGR 73 (673)
T ss_dssp HHHHHHHC--CSSEEEECCCTTSCHHHHHHHHHHHHHHHHCC-------CGGGEEEEESSHHHHHHHHHHHHHHSCT
T ss_pred HHHHHHhC--CCCCEEEEeCCCCChHHHHHHHHHHHHHhcCC-------CHHHeEEEeccHHHHHHHHHHHHHHcCc
Confidence 34455553 2556889999999999876653 3333 22 1357999999999999999999987654
No 120
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=88.65 E-value=0.13 Score=51.41 Aligned_cols=24 Identities=33% Similarity=0.742 Sum_probs=19.2
Q ss_pred HHcCCeEEEEecCCCCccccHHHH
Q 038192 47 VNDNSAVIICGETGCGKTTQVPQF 70 (764)
Q Consensus 47 l~~~~vviI~GeTGSGKTTqvPq~ 70 (764)
+..+.++.|.|++||||||.+-..
T Consensus 20 i~~G~~~~lvGpsGsGKSTLl~~L 43 (218)
T 1z6g_A 20 MNNIYPLVICGPSGVGKGTLIKKL 43 (218)
T ss_dssp --CCCCEEEECSTTSSHHHHHHHH
T ss_pred cCCCCEEEEECCCCCCHHHHHHHH
Confidence 567889999999999999987554
No 121
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=88.50 E-value=0.11 Score=51.97 Aligned_cols=24 Identities=25% Similarity=0.531 Sum_probs=15.7
Q ss_pred HHcCCeEEEEecCCCCccccHHHH
Q 038192 47 VNDNSAVIICGETGCGKTTQVPQF 70 (764)
Q Consensus 47 l~~~~vviI~GeTGSGKTTqvPq~ 70 (764)
+..+.++.|.|++||||||.+=.+
T Consensus 24 v~~G~ii~l~Gp~GsGKSTl~~~L 47 (231)
T 3lnc_A 24 KSVGVILVLSSPSGCGKTTVANKL 47 (231)
T ss_dssp EECCCEEEEECSCC----CHHHHH
T ss_pred cCCCCEEEEECCCCCCHHHHHHHH
Confidence 356789999999999999987543
No 122
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=88.44 E-value=0.13 Score=49.72 Aligned_cols=21 Identities=29% Similarity=0.665 Sum_probs=17.4
Q ss_pred CCeEEEEecCCCCccccHHHH
Q 038192 50 NSAVIICGETGCGKTTQVPQF 70 (764)
Q Consensus 50 ~~vviI~GeTGSGKTTqvPq~ 70 (764)
+++++|.|++||||||.+=..
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~L 21 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKKL 21 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHH
Confidence 467899999999999976543
No 123
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=88.42 E-value=0.48 Score=50.01 Aligned_cols=56 Identities=20% Similarity=0.170 Sum_probs=34.4
Q ss_pred CCeEEEEecCCCCccccHHHHHHHhccCCCCCCCCCceEEEecccHHHHHHHHHHHHHHhC
Q 038192 50 NSAVIICGETGCGKTTQVPQFLFEAGFGSNRCSSRSGRIGVTQPRRVAVLATAKRVAFELG 110 (764)
Q Consensus 50 ~~vviI~GeTGSGKTTqvPq~Lle~~~~~~~~~~~~~~Ii~tQPRRiaAisvA~RVa~E~g 110 (764)
..++.|.|++||||||.+-........... ...++-.-++|.++..-.+..+...|
T Consensus 104 ~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~-----kV~lv~~D~~r~~a~eqL~~~~~~~g 159 (306)
T 1vma_A 104 PFVIMVVGVNGTGKTTSCGKLAKMFVDEGK-----SVVLAAADTFRAAAIEQLKIWGERVG 159 (306)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTC-----CEEEEEECTTCHHHHHHHHHHHHHHT
T ss_pred CeEEEEEcCCCChHHHHHHHHHHHHHhcCC-----EEEEEccccccHHHHHHHHHHHHHcC
Confidence 358899999999999987655432211111 14555667888877654343444443
No 124
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=88.40 E-value=0.24 Score=53.58 Aligned_cols=29 Identities=34% Similarity=0.607 Sum_probs=23.5
Q ss_pred HHHHHHcCCeEEEEecCCCCccccHHHHH
Q 038192 43 IMEAVNDNSAVIICGETGCGKTTQVPQFL 71 (764)
Q Consensus 43 Il~~l~~~~vviI~GeTGSGKTTqvPq~L 71 (764)
+--.+..+.+++|+|+|||||||.+-..+
T Consensus 168 l~~~i~~G~~i~ivG~sGsGKSTll~~l~ 196 (361)
T 2gza_A 168 LRRAVQLERVIVVAGETGSGKTTLMKALM 196 (361)
T ss_dssp HHHHHHTTCCEEEEESSSSCHHHHHHHHH
T ss_pred HHHHHhcCCEEEEECCCCCCHHHHHHHHH
Confidence 43457889999999999999999876543
No 125
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=88.35 E-value=0.19 Score=53.65 Aligned_cols=27 Identities=41% Similarity=0.714 Sum_probs=21.7
Q ss_pred HHHHHHcCCeEEEEecCCCCccccHHH
Q 038192 43 IMEAVNDNSAVIICGETGCGKTTQVPQ 69 (764)
Q Consensus 43 Il~~l~~~~vviI~GeTGSGKTTqvPq 69 (764)
+--.+..+.++.|+|+|||||||.+-.
T Consensus 164 l~~~i~~g~~v~i~G~~GsGKTTll~~ 190 (330)
T 2pt7_A 164 IKDGIAIGKNVIVCGGTGSGKTTYIKS 190 (330)
T ss_dssp HHHHHHHTCCEEEEESTTSCHHHHHHH
T ss_pred hhhhccCCCEEEEECCCCCCHHHHHHH
Confidence 344567889999999999999996543
No 126
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=88.23 E-value=0.37 Score=53.40 Aligned_cols=56 Identities=16% Similarity=0.199 Sum_probs=38.9
Q ss_pred CeEEEEecCCCCccccHHHHHHHhccCCCCCCCCCceEEEecccHHHHHHHHHHHHHHhCC
Q 038192 51 SAVIICGETGCGKTTQVPQFLFEAGFGSNRCSSRSGRIGVTQPRRVAVLATAKRVAFELGL 111 (764)
Q Consensus 51 ~vviI~GeTGSGKTTqvPq~Lle~~~~~~~~~~~~~~Ii~tQPRRiaAisvA~RVa~E~g~ 111 (764)
.+++++|.+||||||.+-........... ...++.+.+.|.+|+......+...|.
T Consensus 98 ~vI~lvG~~GsGKTTt~~kLA~~l~~~G~-----kVllv~~D~~r~~a~eqL~~~~~~~gv 153 (433)
T 3kl4_A 98 FIIMLVGVQGSGKTTTAGKLAYFYKKRGY-----KVGLVAADVYRPAAYDQLLQLGNQIGV 153 (433)
T ss_dssp EEEEECCCTTSCHHHHHHHHHHHHHHTTC-----CEEEEEECCSCHHHHHHHHHHHHTTTC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCC-----eEEEEecCccchhHHHHHHHHHHhcCC
Confidence 48899999999999987665433221111 256778889999988776666665543
No 127
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=88.19 E-value=0.15 Score=50.29 Aligned_cols=24 Identities=21% Similarity=0.419 Sum_probs=19.5
Q ss_pred HcCCeEEEEecCCCCccccHHHHH
Q 038192 48 NDNSAVIICGETGCGKTTQVPQFL 71 (764)
Q Consensus 48 ~~~~vviI~GeTGSGKTTqvPq~L 71 (764)
..+.+++|+|++||||||.+=...
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~ 29 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVF 29 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHH
T ss_pred CCCcEEEEECcCCCCHHHHHHHHH
Confidence 357789999999999999875543
No 128
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=88.11 E-value=0.31 Score=47.35 Aligned_cols=38 Identities=26% Similarity=0.435 Sum_probs=28.8
Q ss_pred CCeEEEEecCCCCccccHHHHHHHhccCCCCCCCCCceEEEeccc
Q 038192 50 NSAVIICGETGCGKTTQVPQFLFEAGFGSNRCSSRSGRIGVTQPR 94 (764)
Q Consensus 50 ~~vviI~GeTGSGKTTqvPq~Lle~~~~~~~~~~~~~~Ii~tQPR 94 (764)
+.+.+++|+.||||||.+-+.+....... .++++.+|.
T Consensus 3 g~i~vi~G~~gsGKTT~ll~~~~~~~~~g-------~~v~~~~~~ 40 (184)
T 2orw_A 3 GKLTVITGPMYSGKTTELLSFVEIYKLGK-------KKVAVFKPK 40 (184)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHHHHTT-------CEEEEEEEC
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHHHCC-------CeEEEEeec
Confidence 57899999999999999888776543221 367777777
No 129
>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B*
Probab=87.76 E-value=0.56 Score=55.48 Aligned_cols=69 Identities=19% Similarity=0.109 Sum_probs=46.0
Q ss_pred hhHHHHHHHHHcCCeEEEEecCCCCccccHHHHHHHhccCCCCCCCCCceEEEecccHHHHHHHHHHHHHHhCC
Q 038192 38 MMEQEIMEAVNDNSAVIICGETGCGKTTQVPQFLFEAGFGSNRCSSRSGRIGVTQPRRVAVLATAKRVAFELGL 111 (764)
Q Consensus 38 ~~~~~Il~~l~~~~vviI~GeTGSGKTTqvPq~Lle~~~~~~~~~~~~~~Ii~tQPRRiaAisvA~RVa~E~g~ 111 (764)
..|.+++... +..++|.|..|||||+.+-.-+.......+ ..+.+|+++-.++-||..+.+|+....|.
T Consensus 14 ~~Q~~av~~~--~g~~lV~AgAGSGKT~vL~~ri~~ll~~~~---~~p~~IL~vTFTnkAA~Em~~Rl~~~l~~ 82 (724)
T 1pjr_A 14 KEQQEAVRTT--EGPLLIMAGAGSGKTRVLTHRIAYLMAEKH---VAPWNILAITFTNKAAREMRERVQSLLGG 82 (724)
T ss_dssp HHHHHHHHCC--SSCEEEEECTTSCHHHHHHHHHHHHHHTTC---CCGGGEEEEESSHHHHHHHHHHHHHHHGG
T ss_pred HHHHHHHhCC--CCCEEEEEcCCCCHHHHHHHHHHHHHHhcC---CCHHHeEEEeccHHHHHHHHHHHHHHhcc
Confidence 3444555542 345788899999999876553332111101 12358999999999999999999987654
No 130
>3u4q_A ATP-dependent helicase/nuclease subunit A; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_A*
Probab=87.70 E-value=0.45 Score=59.85 Aligned_cols=71 Identities=13% Similarity=0.136 Sum_probs=50.1
Q ss_pred hhhHHHHHHHHHcCCeEEEEecCCCCccccHHHHHHHhccCCCCCCCCCceEEEecccHHHHHHHHHHHHHHhC
Q 038192 37 VMMEQEIMEAVNDNSAVIICGETGCGKTTQVPQFLFEAGFGSNRCSSRSGRIGVTQPRRVAVLATAKRVAFELG 110 (764)
Q Consensus 37 ~~~~~~Il~~l~~~~vviI~GeTGSGKTTqvPq~Lle~~~~~~~~~~~~~~Ii~tQPRRiaAisvA~RVa~E~g 110 (764)
...|.+++..- ++.++|+|..||||||.+-+-+........ ..-.+.+|+|.-+++.||-.+.+|+....+
T Consensus 12 t~eQ~~~i~~~--~~~~~v~a~AGSGKT~vl~~ri~~ll~~~~-~~~~~~~il~~Tft~~aa~e~~~ri~~~l~ 82 (1232)
T 3u4q_A 12 TDDQWNAIVST--GQDILVAAAAGSGKTAVLVERMIRKITAEE-NPIDVDRLLVVTFTNASAAEMKHRIAEALE 82 (1232)
T ss_dssp CHHHHHHHHCC--SSCEEEEECTTCCHHHHHHHHHHHHHSCSS-SCCCGGGEEEECSSHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHhCC--CCCEEEEecCCCcHHHHHHHHHHHHHhcCC-CCCCccceEEEeccHHHHHHHHHHHHHHHH
Confidence 44455566543 557899999999999988776555432211 011245899999999999999999987553
No 131
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=87.53 E-value=0.41 Score=51.01 Aligned_cols=57 Identities=19% Similarity=0.202 Sum_probs=34.3
Q ss_pred cCCeEEEEecCCCCccccHHHHHHHhccCCCCCCCCCceEEEecccHHHHHHHHHHHHHHhC
Q 038192 49 DNSAVIICGETGCGKTTQVPQFLFEAGFGSNRCSSRSGRIGVTQPRRVAVLATAKRVAFELG 110 (764)
Q Consensus 49 ~~~vviI~GeTGSGKTTqvPq~Lle~~~~~~~~~~~~~~Ii~tQPRRiaAisvA~RVa~E~g 110 (764)
.+.++.+.|++||||||.+-....-.....+ ...+.-..+.|.+|..-.+..+...|
T Consensus 128 ~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g-----~V~l~g~D~~r~~a~eql~~~~~~~g 184 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTTIAKLANWLKNHGF-----SVVIAASDTFRAGAIEQLEEHAKRIG 184 (328)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHHTTC-----CEEEEEECCSSTTHHHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhcCC-----EEEEEeecccccchHHHHHHHHHHcC
Confidence 3568999999999999987654322111111 13444555667777655454555443
No 132
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=87.53 E-value=0.15 Score=47.69 Aligned_cols=20 Identities=25% Similarity=0.493 Sum_probs=16.7
Q ss_pred CeEEEEecCCCCccccHHHH
Q 038192 51 SAVIICGETGCGKTTQVPQF 70 (764)
Q Consensus 51 ~vviI~GeTGSGKTTqvPq~ 70 (764)
.+++|+|.+||||||+.-..
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 37899999999999976554
No 133
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=87.41 E-value=0.3 Score=47.44 Aligned_cols=28 Identities=21% Similarity=0.251 Sum_probs=20.7
Q ss_pred HHHHHHHcC------CeEEEEecCCCCccccHHH
Q 038192 42 EIMEAVNDN------SAVIICGETGCGKTTQVPQ 69 (764)
Q Consensus 42 ~Il~~l~~~------~vviI~GeTGSGKTTqvPq 69 (764)
.+...+.+. ..++|.|++||||||..-.
T Consensus 40 ~~~~~~~~~~~~~~~~~~~l~G~~GtGKT~la~~ 73 (202)
T 2w58_A 40 FAERFVAEYEPGKKMKGLYLHGSFGVGKTYLLAA 73 (202)
T ss_dssp HHHHHHHHCCSSCCCCEEEEECSTTSSHHHHHHH
T ss_pred HHHHHHHHhhhccCCCeEEEECCCCCCHHHHHHH
Confidence 344555544 7899999999999986543
No 134
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=87.37 E-value=0.15 Score=55.03 Aligned_cols=23 Identities=30% Similarity=0.551 Sum_probs=18.6
Q ss_pred HcCCeEEEEecCCCCccccHHHH
Q 038192 48 NDNSAVIICGETGCGKTTQVPQF 70 (764)
Q Consensus 48 ~~~~vviI~GeTGSGKTTqvPq~ 70 (764)
..+.+++|+|+|||||||.+=..
T Consensus 121 ~~~g~i~I~GptGSGKTTlL~~l 143 (356)
T 3jvv_A 121 VPRGLVLVTGPTGSGKSTTLAAM 143 (356)
T ss_dssp CSSEEEEEECSTTSCHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHH
Confidence 44568999999999999986543
No 135
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=87.37 E-value=0.37 Score=47.24 Aligned_cols=32 Identities=19% Similarity=0.293 Sum_probs=24.0
Q ss_pred HHHHHHHHHcCC---eEEEEecCCCCccccHHHHH
Q 038192 40 EQEIMEAVNDNS---AVIICGETGCGKTTQVPQFL 71 (764)
Q Consensus 40 ~~~Il~~l~~~~---vviI~GeTGSGKTTqvPq~L 71 (764)
.+.+...+..++ .++|.|++|+||||.+=.+.
T Consensus 32 ~~~l~~~l~~~~~~~~~ll~G~~G~GKT~l~~~~~ 66 (250)
T 1njg_A 32 LTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLA 66 (250)
T ss_dssp HHHHHHHHHHTCCCSEEEEECSTTSCHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHH
Confidence 345566666665 79999999999999775554
No 136
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=87.13 E-value=0.22 Score=48.02 Aligned_cols=24 Identities=25% Similarity=0.548 Sum_probs=19.6
Q ss_pred HHcCCeEEEEecCCCCccccHHHH
Q 038192 47 VNDNSAVIICGETGCGKTTQVPQF 70 (764)
Q Consensus 47 l~~~~vviI~GeTGSGKTTqvPq~ 70 (764)
+....+++|+|..||||||+.-..
T Consensus 6 m~~~~~I~l~G~~GsGKsT~~~~L 29 (196)
T 2c95_A 6 LKKTNIIFVVGGPGSGKGTQCEKI 29 (196)
T ss_dssp HTTSCEEEEEECTTSSHHHHHHHH
T ss_pred CcCCCEEEEECCCCCCHHHHHHHH
Confidence 456678999999999999986543
No 137
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=87.04 E-value=0.25 Score=47.67 Aligned_cols=24 Identities=29% Similarity=0.477 Sum_probs=19.5
Q ss_pred HHHcCCeEEEEecCCCCccccHHH
Q 038192 46 AVNDNSAVIICGETGCGKTTQVPQ 69 (764)
Q Consensus 46 ~l~~~~vviI~GeTGSGKTTqvPq 69 (764)
.+....+++|+|..||||||+.-.
T Consensus 8 ~~~~~~~I~l~G~~GsGKsT~a~~ 31 (199)
T 2bwj_A 8 DLRKCKIIFIIGGPGSGKGTQCEK 31 (199)
T ss_dssp HHHHSCEEEEEECTTSSHHHHHHH
T ss_pred ccCCCCEEEEECCCCCCHHHHHHH
Confidence 445567899999999999998644
No 138
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=86.88 E-value=0.15 Score=51.23 Aligned_cols=23 Identities=26% Similarity=0.512 Sum_probs=18.9
Q ss_pred HcCCeEEEEecCCCCccccHHHH
Q 038192 48 NDNSAVIICGETGCGKTTQVPQF 70 (764)
Q Consensus 48 ~~~~vviI~GeTGSGKTTqvPq~ 70 (764)
....|++|.|++||||+||--..
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L 49 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKL 49 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHH
Confidence 45678999999999999986543
No 139
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=86.80 E-value=0.42 Score=45.06 Aligned_cols=30 Identities=23% Similarity=0.484 Sum_probs=21.3
Q ss_pred HHHHHHHHcC--CeEEEEecCCCCccccHHHH
Q 038192 41 QEIMEAVNDN--SAVIICGETGCGKTTQVPQF 70 (764)
Q Consensus 41 ~~Il~~l~~~--~vviI~GeTGSGKTTqvPq~ 70 (764)
+.+.+.+..+ ..++|.|++||||||.+=.+
T Consensus 32 ~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~~ 63 (195)
T 1jbk_A 32 RRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGL 63 (195)
T ss_dssp HHHHHHHTSSSSCEEEEECCTTSCHHHHHHHH
T ss_pred HHHHHHHhcCCCCceEEECCCCCCHHHHHHHH
Confidence 3455555433 67899999999999876444
No 140
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=86.68 E-value=0.21 Score=50.04 Aligned_cols=25 Identities=16% Similarity=0.437 Sum_probs=19.2
Q ss_pred HHHcCCeEEEEecCCCCccccHHHH
Q 038192 46 AVNDNSAVIICGETGCGKTTQVPQF 70 (764)
Q Consensus 46 ~l~~~~vviI~GeTGSGKTTqvPq~ 70 (764)
.+..+.+++|+|+.||||||.+=..
T Consensus 12 ~~~~G~ii~l~GpsGsGKSTLlk~L 36 (219)
T 1s96_A 12 HMAQGTLYIVSAPSGAGKSSLIQAL 36 (219)
T ss_dssp ---CCCEEEEECCTTSCHHHHHHHH
T ss_pred cCCCCcEEEEECCCCCCHHHHHHHH
Confidence 3566889999999999999987653
No 141
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=86.60 E-value=0.2 Score=47.90 Aligned_cols=20 Identities=35% Similarity=0.561 Sum_probs=17.2
Q ss_pred CCeEEEEecCCCCccccHHH
Q 038192 50 NSAVIICGETGCGKTTQVPQ 69 (764)
Q Consensus 50 ~~vviI~GeTGSGKTTqvPq 69 (764)
+.+++|+|..||||||+.-.
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~ 22 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQL 22 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHH
Confidence 56799999999999998654
No 142
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=86.59 E-value=0.2 Score=48.84 Aligned_cols=23 Identities=30% Similarity=0.358 Sum_probs=17.9
Q ss_pred HHcCCeEEEEecCCCCccccHHH
Q 038192 47 VNDNSAVIICGETGCGKTTQVPQ 69 (764)
Q Consensus 47 l~~~~vviI~GeTGSGKTTqvPq 69 (764)
+....+++|.|.+||||||..-.
T Consensus 22 ~~~~~~i~l~G~~GsGKsTl~~~ 44 (199)
T 3vaa_A 22 SNAMVRIFLTGYMGAGKTTLGKA 44 (199)
T ss_dssp --CCCEEEEECCTTSCHHHHHHH
T ss_pred cCCCCEEEEEcCCCCCHHHHHHH
Confidence 34567899999999999997644
No 143
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=86.25 E-value=0.17 Score=51.34 Aligned_cols=22 Identities=32% Similarity=0.570 Sum_probs=18.7
Q ss_pred HHcCCeEEEEecCCCCccccHH
Q 038192 47 VNDNSAVIICGETGCGKTTQVP 68 (764)
Q Consensus 47 l~~~~vviI~GeTGSGKTTqvP 68 (764)
+..+.++.|.|++||||||.+=
T Consensus 28 i~~Ge~~~iiG~nGsGKSTLl~ 49 (235)
T 3tif_A 28 IKEGEFVSIMGPSGSGKSTMLN 49 (235)
T ss_dssp ECTTCEEEEECSTTSSHHHHHH
T ss_pred EcCCCEEEEECCCCCcHHHHHH
Confidence 3568899999999999999764
No 144
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=86.09 E-value=0.17 Score=49.70 Aligned_cols=24 Identities=25% Similarity=0.643 Sum_probs=19.2
Q ss_pred HHcCCeEEEEecCCCCccccHHHH
Q 038192 47 VNDNSAVIICGETGCGKTTQVPQF 70 (764)
Q Consensus 47 l~~~~vviI~GeTGSGKTTqvPq~ 70 (764)
+..+.+++|+|++||||||+.=..
T Consensus 9 ~~~~~~i~l~G~sGsGKsTl~~~L 32 (204)
T 2qor_A 9 MARIPPLVVCGPSGVGKGTLIKKV 32 (204)
T ss_dssp CCCCCCEEEECCTTSCHHHHHHHH
T ss_pred cccCCEEEEECCCCCCHHHHHHHH
Confidence 345678999999999999976543
No 145
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=86.03 E-value=0.23 Score=49.49 Aligned_cols=23 Identities=26% Similarity=0.364 Sum_probs=17.5
Q ss_pred HcCCeEEEEecCCCCccccHHHH
Q 038192 48 NDNSAVIICGETGCGKTTQVPQF 70 (764)
Q Consensus 48 ~~~~vviI~GeTGSGKTTqvPq~ 70 (764)
.....++|.|.+||||||+.-..
T Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~L 27 (227)
T 1zd8_A 5 ARLLRAVIMGAPGSGKGTVSSRI 27 (227)
T ss_dssp --CCEEEEEECTTSSHHHHHHHH
T ss_pred ccCcEEEEECCCCCCHHHHHHHH
Confidence 34467899999999999987543
No 146
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=85.71 E-value=0.25 Score=49.41 Aligned_cols=29 Identities=34% Similarity=0.686 Sum_probs=24.4
Q ss_pred HHcCCeEEEEecCCCCccccHHHHHHHhc
Q 038192 47 VNDNSAVIICGETGCGKTTQVPQFLFEAG 75 (764)
Q Consensus 47 l~~~~vviI~GeTGSGKTTqvPq~Lle~~ 75 (764)
+..+++++|.|++|+||||..-|++++..
T Consensus 27 l~~G~l~~i~G~pG~GKT~l~l~~~~~~~ 55 (251)
T 2zts_A 27 FPEGTTVLLTGGTGTGKTTFAAQFIYKGA 55 (251)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCCCeEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 34579999999999999999888887643
No 147
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=85.54 E-value=0.24 Score=46.74 Aligned_cols=23 Identities=22% Similarity=0.231 Sum_probs=17.6
Q ss_pred CCeEEEEecCCCCccccHHHHHHH
Q 038192 50 NSAVIICGETGCGKTTQVPQFLFE 73 (764)
Q Consensus 50 ~~vviI~GeTGSGKTTqvPq~Lle 73 (764)
-|+++|+|..||||||+-- .|.+
T Consensus 7 ~~~i~l~G~~GsGKSTva~-~La~ 29 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLAQ-ELGL 29 (168)
T ss_dssp -CEEEEESCTTSSHHHHHH-HHHH
T ss_pred cceEEEECCCCCCHHHHHH-HHHH
Confidence 3789999999999999653 3433
No 148
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=85.50 E-value=0.54 Score=49.48 Aligned_cols=22 Identities=32% Similarity=0.564 Sum_probs=18.2
Q ss_pred CCeEEEEecCCCCccccHHHHH
Q 038192 50 NSAVIICGETGCGKTTQVPQFL 71 (764)
Q Consensus 50 ~~vviI~GeTGSGKTTqvPq~L 71 (764)
+.++.+.|++||||||.+-...
T Consensus 100 g~vi~lvG~nGsGKTTll~~La 121 (302)
T 3b9q_A 100 PAVIMIVGVNGGGKTTSLGKLA 121 (302)
T ss_dssp CEEEEEECCTTSCHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHH
Confidence 4588999999999999876543
No 149
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=85.45 E-value=0.31 Score=45.56 Aligned_cols=22 Identities=23% Similarity=0.528 Sum_probs=18.4
Q ss_pred cCCeEEEEecCCCCccccHHHH
Q 038192 49 DNSAVIICGETGCGKTTQVPQF 70 (764)
Q Consensus 49 ~~~vviI~GeTGSGKTTqvPq~ 70 (764)
.++.++|.|++||||||.+-.+
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i 56 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAW 56 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHH
Confidence 5788999999999999876543
No 150
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=85.42 E-value=0.27 Score=48.04 Aligned_cols=23 Identities=30% Similarity=0.469 Sum_probs=18.6
Q ss_pred HcCCeEEEEecCCCCccccHHHH
Q 038192 48 NDNSAVIICGETGCGKTTQVPQF 70 (764)
Q Consensus 48 ~~~~vviI~GeTGSGKTTqvPq~ 70 (764)
..+.+++|.|+.||||||..-..
T Consensus 27 ~~g~~i~l~G~~GsGKSTl~~~L 49 (200)
T 4eun_A 27 EPTRHVVVMGVSGSGKTTIAHGV 49 (200)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHH
Confidence 34679999999999999986543
No 151
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=85.36 E-value=0.24 Score=49.68 Aligned_cols=26 Identities=38% Similarity=0.679 Sum_probs=22.8
Q ss_pred HHHcCCeEEEEecCCCCccccHHHHH
Q 038192 46 AVNDNSAVIICGETGCGKTTQVPQFL 71 (764)
Q Consensus 46 ~l~~~~vviI~GeTGSGKTTqvPq~L 71 (764)
-+..+.++.|.|++||||||.+=+++
T Consensus 26 gi~~G~~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 26 GFPEGTTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHH
Confidence 46778999999999999999887766
No 152
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=85.32 E-value=0.34 Score=45.88 Aligned_cols=23 Identities=30% Similarity=0.440 Sum_probs=19.8
Q ss_pred HcCCeEEEEecCCCCccccHHHH
Q 038192 48 NDNSAVIICGETGCGKTTQVPQF 70 (764)
Q Consensus 48 ~~~~vviI~GeTGSGKTTqvPq~ 70 (764)
..++++.+.|+.||||||.+-.+
T Consensus 31 ~~Ge~v~L~G~nGaGKTTLlr~l 53 (158)
T 1htw_A 31 EKAIMVYLNGDLGAGKTTLTRGM 53 (158)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHH
Confidence 67889999999999999976544
No 153
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=85.22 E-value=0.42 Score=45.05 Aligned_cols=30 Identities=23% Similarity=0.445 Sum_probs=21.1
Q ss_pred HHHHHHHc--CCeEEEEecCCCCccccHHHHH
Q 038192 42 EIMEAVND--NSAVIICGETGCGKTTQVPQFL 71 (764)
Q Consensus 42 ~Il~~l~~--~~vviI~GeTGSGKTTqvPq~L 71 (764)
.+++.+.. ...++|.|++||||||.+=.+.
T Consensus 33 ~l~~~l~~~~~~~vll~G~~G~GKT~la~~~~ 64 (187)
T 2p65_A 33 RAIQILSRRTKNNPILLGDPGVGKTAIVEGLA 64 (187)
T ss_dssp HHHHHHTSSSSCEEEEESCGGGCHHHHHHHHH
T ss_pred HHHHHHhCCCCCceEEECCCCCCHHHHHHHHH
Confidence 34444443 4678999999999998765443
No 154
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=85.12 E-value=0.2 Score=50.75 Aligned_cols=23 Identities=26% Similarity=0.732 Sum_probs=19.2
Q ss_pred HHcCCeEEEEecCCCCccccHHH
Q 038192 47 VNDNSAVIICGETGCGKTTQVPQ 69 (764)
Q Consensus 47 l~~~~vviI~GeTGSGKTTqvPq 69 (764)
+..+.++.|.|++||||||.+=.
T Consensus 28 i~~Ge~~~i~G~nGsGKSTLl~~ 50 (237)
T 2cbz_A 28 IPEGALVAVVGQVGCGKSSLLSA 50 (237)
T ss_dssp ECTTCEEEEECSTTSSHHHHHHH
T ss_pred ECCCCEEEEECCCCCCHHHHHHH
Confidence 35678999999999999997653
No 155
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=85.11 E-value=0.35 Score=47.66 Aligned_cols=23 Identities=17% Similarity=0.497 Sum_probs=19.4
Q ss_pred cCCeEEEEecCCCCccccHHHHH
Q 038192 49 DNSAVIICGETGCGKTTQVPQFL 71 (764)
Q Consensus 49 ~~~vviI~GeTGSGKTTqvPq~L 71 (764)
.+.+++|+|++||||||.+=..+
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~ 40 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALL 40 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCEEEEECcCCCCHHHHHHHHH
Confidence 57889999999999999876544
No 156
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=85.08 E-value=0.25 Score=46.79 Aligned_cols=19 Identities=26% Similarity=0.455 Sum_probs=16.1
Q ss_pred CeEEEEecCCCCccccHHH
Q 038192 51 SAVIICGETGCGKTTQVPQ 69 (764)
Q Consensus 51 ~vviI~GeTGSGKTTqvPq 69 (764)
.+++|+|.+||||||+.-.
T Consensus 3 ~~I~i~G~~GsGKST~a~~ 21 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWARE 21 (181)
T ss_dssp EEEEEECCTTSSHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHH
Confidence 3689999999999998754
No 157
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=85.05 E-value=0.27 Score=46.44 Aligned_cols=19 Identities=26% Similarity=0.483 Sum_probs=16.3
Q ss_pred CCeEEEEecCCCCccccHH
Q 038192 50 NSAVIICGETGCGKTTQVP 68 (764)
Q Consensus 50 ~~vviI~GeTGSGKTTqvP 68 (764)
+.+++|.|+.||||||..-
T Consensus 4 ~~~i~l~G~~GsGKSTl~~ 22 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTIGR 22 (173)
T ss_dssp CCCEEEECCTTSCHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHH
Confidence 4678999999999999754
No 158
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=85.04 E-value=0.56 Score=45.31 Aligned_cols=32 Identities=22% Similarity=0.342 Sum_probs=23.0
Q ss_pred HHHHHHHHHcCC--eEEEEecCCCCccccHHHHH
Q 038192 40 EQEIMEAVNDNS--AVIICGETGCGKTTQVPQFL 71 (764)
Q Consensus 40 ~~~Il~~l~~~~--vviI~GeTGSGKTTqvPq~L 71 (764)
.+.+.+.+..+. .++|.|++|+||||.+=.+.
T Consensus 26 ~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~l~ 59 (226)
T 2chg_A 26 IQRLKGYVERKNIPHLLFSGPPGTGKTATAIALA 59 (226)
T ss_dssp HHHHHHHHHTTCCCCEEEECSTTSSHHHHHHHHH
T ss_pred HHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHH
Confidence 445666666553 48999999999998765443
No 159
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=85.02 E-value=0.25 Score=46.37 Aligned_cols=18 Identities=28% Similarity=0.440 Sum_probs=15.6
Q ss_pred eEEEEecCCCCccccHHH
Q 038192 52 AVIICGETGCGKTTQVPQ 69 (764)
Q Consensus 52 vviI~GeTGSGKTTqvPq 69 (764)
+++|+|..||||||+.-.
T Consensus 3 ~i~l~G~~GsGKsT~~~~ 20 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAK 20 (173)
T ss_dssp EEEEECSSSSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 689999999999997654
No 160
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=84.91 E-value=0.21 Score=50.12 Aligned_cols=23 Identities=35% Similarity=0.455 Sum_probs=19.1
Q ss_pred HHcCCeEEEEecCCCCccccHHH
Q 038192 47 VNDNSAVIICGETGCGKTTQVPQ 69 (764)
Q Consensus 47 l~~~~vviI~GeTGSGKTTqvPq 69 (764)
+..+.++.|.|+.||||||.+=.
T Consensus 27 i~~Ge~~~iiG~nGsGKSTLl~~ 49 (224)
T 2pcj_A 27 VKKGEFVSIIGASGSGKSTLLYI 49 (224)
T ss_dssp EETTCEEEEEECTTSCHHHHHHH
T ss_pred EcCCCEEEEECCCCCCHHHHHHH
Confidence 35678999999999999997643
No 161
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=84.85 E-value=0.42 Score=46.82 Aligned_cols=39 Identities=21% Similarity=0.284 Sum_probs=30.1
Q ss_pred cCCeEEEEecCCCCccccHHHHHHHhccCCCCCCCCCceEEEeccc
Q 038192 49 DNSAVIICGETGCGKTTQVPQFLFEAGFGSNRCSSRSGRIGVTQPR 94 (764)
Q Consensus 49 ~~~vviI~GeTGSGKTTqvPq~Lle~~~~~~~~~~~~~~Ii~tQPR 94 (764)
.+.+.+++|+.||||||.+-+.+....... .++++.+|.
T Consensus 7 ~g~i~v~~G~mgsGKTT~ll~~a~r~~~~g-------~kV~v~k~~ 45 (191)
T 1xx6_A 7 HGWVEVIVGPMYSGKSEELIRRIRRAKIAK-------QKIQVFKPE 45 (191)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHTT-------CCEEEEEEC
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHHCC-------CEEEEEEec
Confidence 356899999999999999988877653221 368888887
No 162
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=84.76 E-value=0.25 Score=53.64 Aligned_cols=25 Identities=24% Similarity=0.553 Sum_probs=20.7
Q ss_pred HHcCCeEEEEecCCCCccccHHHHH
Q 038192 47 VNDNSAVIICGETGCGKTTQVPQFL 71 (764)
Q Consensus 47 l~~~~vviI~GeTGSGKTTqvPq~L 71 (764)
+..+.+++|+|+|||||||.+-..+
T Consensus 133 ~~~g~~i~ivG~~GsGKTTll~~l~ 157 (372)
T 2ewv_A 133 HRKMGLILVTGPTGSGKSTTIASMI 157 (372)
T ss_dssp TSSSEEEEEECSSSSSHHHHHHHHH
T ss_pred hcCCCEEEEECCCCCCHHHHHHHHH
Confidence 4667899999999999999876544
No 163
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=84.73 E-value=0.23 Score=49.08 Aligned_cols=27 Identities=22% Similarity=0.377 Sum_probs=22.9
Q ss_pred HHHcCCeEEEEecCCCCccccHHHHHH
Q 038192 46 AVNDNSAVIICGETGCGKTTQVPQFLF 72 (764)
Q Consensus 46 ~l~~~~vviI~GeTGSGKTTqvPq~Ll 72 (764)
-+..+.++.|.|++||||||.+-++..
T Consensus 21 gi~~G~~~~l~G~nGsGKSTll~~l~g 47 (231)
T 4a74_A 21 GIETQAITEVFGEFGSGKTQLAHTLAV 47 (231)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHH
Confidence 355688999999999999999888764
No 164
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=84.72 E-value=0.54 Score=46.83 Aligned_cols=29 Identities=31% Similarity=0.570 Sum_probs=24.6
Q ss_pred HHcCCeEEEEecCCCCccccHHHHHHHhc
Q 038192 47 VNDNSAVIICGETGCGKTTQVPQFLFEAG 75 (764)
Q Consensus 47 l~~~~vviI~GeTGSGKTTqvPq~Lle~~ 75 (764)
+..+.+++|.|++||||||..-|++....
T Consensus 20 l~~G~~~~i~G~~GsGKTtl~~~~~~~~~ 48 (247)
T 2dr3_A 20 IPERNVVLLSGGPGTGKTIFSQQFLWNGL 48 (247)
T ss_dssp EETTCEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 45688999999999999999888877643
No 165
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=84.57 E-value=0.21 Score=47.74 Aligned_cols=21 Identities=43% Similarity=0.653 Sum_probs=17.3
Q ss_pred CCeEEEEecCCCCccccHHHH
Q 038192 50 NSAVIICGETGCGKTTQVPQF 70 (764)
Q Consensus 50 ~~vviI~GeTGSGKTTqvPq~ 70 (764)
+..++++|..||||||+.-.+
T Consensus 4 g~~I~l~G~~GsGKST~~~~L 24 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRL 24 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHH
Confidence 457899999999999987543
No 166
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=84.49 E-value=0.26 Score=48.47 Aligned_cols=20 Identities=30% Similarity=0.478 Sum_probs=16.9
Q ss_pred cCCeEEEEecCCCCccccHH
Q 038192 49 DNSAVIICGETGCGKTTQVP 68 (764)
Q Consensus 49 ~~~vviI~GeTGSGKTTqvP 68 (764)
.+.++.|.|++||||||.+-
T Consensus 21 ~g~~v~I~G~sGsGKSTl~~ 40 (208)
T 3c8u_A 21 GRQLVALSGAPGSGKSTLSN 40 (208)
T ss_dssp SCEEEEEECCTTSCTHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHH
Confidence 35688999999999999754
No 167
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=84.41 E-value=0.54 Score=51.83 Aligned_cols=24 Identities=29% Similarity=0.451 Sum_probs=19.4
Q ss_pred cCCeEEEEecCCCCccccHHHHHH
Q 038192 49 DNSAVIICGETGCGKTTQVPQFLF 72 (764)
Q Consensus 49 ~~~vviI~GeTGSGKTTqvPq~Ll 72 (764)
.+.+++|+|+|||||||.+-..+-
T Consensus 166 ~ggii~I~GpnGSGKTTlL~allg 189 (418)
T 1p9r_A 166 PHGIILVTGPTGSGKSTTLYAGLQ 189 (418)
T ss_dssp SSEEEEEECSTTSCHHHHHHHHHH
T ss_pred cCCeEEEECCCCCCHHHHHHHHHh
Confidence 456899999999999998766543
No 168
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=84.26 E-value=0.71 Score=48.40 Aligned_cols=54 Identities=22% Similarity=0.305 Sum_probs=33.0
Q ss_pred cCCeEEEEecCCCCccccHHHHHHHhccCCCCCCCCCceEEEecccHHHHHHHHHHHH
Q 038192 49 DNSAVIICGETGCGKTTQVPQFLFEAGFGSNRCSSRSGRIGVTQPRRVAVLATAKRVA 106 (764)
Q Consensus 49 ~~~vviI~GeTGSGKTTqvPq~Lle~~~~~~~~~~~~~~Ii~tQPRRiaAisvA~RVa 106 (764)
...++++.|++|+||||.+-..........+ ....++-.-|.|.+|...-...+
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G----~~V~lv~~D~~r~~a~eqL~~~~ 157 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISMLEKH----KKIAFITTDTYRIAAVEQLKTYA 157 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHHHTTC----CCEEEEECCCSSTTHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcC----CEEEEEecCcccchHHHHHHHHH
Confidence 3568999999999999987665433221111 12455556677877654333333
No 169
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=84.24 E-value=0.31 Score=46.59 Aligned_cols=20 Identities=30% Similarity=0.413 Sum_probs=16.5
Q ss_pred CCeEEEEecCCCCccccHHH
Q 038192 50 NSAVIICGETGCGKTTQVPQ 69 (764)
Q Consensus 50 ~~vviI~GeTGSGKTTqvPq 69 (764)
...++++|.+||||||+--.
T Consensus 5 ~~~i~l~G~~GsGKst~a~~ 24 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQ 24 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHH
Confidence 56789999999999986543
No 170
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=84.02 E-value=0.32 Score=46.44 Aligned_cols=20 Identities=25% Similarity=0.365 Sum_probs=16.5
Q ss_pred CeEEEEecCCCCccccHHHH
Q 038192 51 SAVIICGETGCGKTTQVPQF 70 (764)
Q Consensus 51 ~vviI~GeTGSGKTTqvPq~ 70 (764)
.+++|.|++||||||.+=-+
T Consensus 27 g~~~i~G~NGsGKStll~ai 46 (182)
T 3kta_A 27 GFTAIVGANGSGKSNIGDAI 46 (182)
T ss_dssp SEEEEEECTTSSHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHH
Confidence 38899999999999876443
No 171
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=83.93 E-value=0.24 Score=51.51 Aligned_cols=23 Identities=26% Similarity=0.460 Sum_probs=19.4
Q ss_pred HHcCCeEEEEecCCCCccccHHH
Q 038192 47 VNDNSAVIICGETGCGKTTQVPQ 69 (764)
Q Consensus 47 l~~~~vviI~GeTGSGKTTqvPq 69 (764)
+..+.++.|.|++||||||.+-.
T Consensus 31 i~~Ge~~~iiGpnGsGKSTLl~~ 53 (275)
T 3gfo_A 31 IKRGEVTAILGGNGVGKSTLFQN 53 (275)
T ss_dssp EETTSEEEEECCTTSSHHHHHHH
T ss_pred EcCCCEEEEECCCCCCHHHHHHH
Confidence 35688999999999999998754
No 172
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=83.87 E-value=0.3 Score=48.48 Aligned_cols=18 Identities=33% Similarity=0.589 Sum_probs=15.0
Q ss_pred eEEEEecCCCCccccHHH
Q 038192 52 AVIICGETGCGKTTQVPQ 69 (764)
Q Consensus 52 vviI~GeTGSGKTTqvPq 69 (764)
++++.|++||||+||--.
T Consensus 2 ~Iil~GpPGsGKgTqa~~ 19 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKR 19 (206)
T ss_dssp EEEEECSTTSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 478899999999988644
No 173
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=83.86 E-value=0.3 Score=47.80 Aligned_cols=22 Identities=32% Similarity=0.318 Sum_probs=17.3
Q ss_pred HcCCeEEEEecCCCCccccHHH
Q 038192 48 NDNSAVIICGETGCGKTTQVPQ 69 (764)
Q Consensus 48 ~~~~vviI~GeTGSGKTTqvPq 69 (764)
..+.++.|.|++||||||..-.
T Consensus 4 ~~~~~i~i~G~~GsGKSTl~~~ 25 (211)
T 3asz_A 4 PKPFVIGIAGGTASGKTTLAQA 25 (211)
T ss_dssp -CCEEEEEEESTTSSHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHH
Confidence 3456889999999999997643
No 174
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=83.81 E-value=0.23 Score=49.63 Aligned_cols=23 Identities=30% Similarity=0.475 Sum_probs=19.2
Q ss_pred HHcCCeEEEEecCCCCccccHHH
Q 038192 47 VNDNSAVIICGETGCGKTTQVPQ 69 (764)
Q Consensus 47 l~~~~vviI~GeTGSGKTTqvPq 69 (764)
+..+.++.|.|+.||||||.+=.
T Consensus 32 i~~Ge~~~iiG~NGsGKSTLlk~ 54 (214)
T 1sgw_A 32 IEKGNVVNFHGPNGIGKTTLLKT 54 (214)
T ss_dssp EETTCCEEEECCTTSSHHHHHHH
T ss_pred EcCCCEEEEECCCCCCHHHHHHH
Confidence 35678999999999999997654
No 175
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=83.79 E-value=0.35 Score=46.87 Aligned_cols=21 Identities=29% Similarity=0.363 Sum_probs=17.9
Q ss_pred cCCeEEEEecCCCCccccHHH
Q 038192 49 DNSAVIICGETGCGKTTQVPQ 69 (764)
Q Consensus 49 ~~~vviI~GeTGSGKTTqvPq 69 (764)
.+..++|+|..||||||+.-.
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~ 23 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMN 23 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHH
Confidence 356789999999999999864
No 176
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=83.75 E-value=0.3 Score=46.73 Aligned_cols=20 Identities=35% Similarity=0.531 Sum_probs=16.6
Q ss_pred CCeEEEEecCCCCccccHHH
Q 038192 50 NSAVIICGETGCGKTTQVPQ 69 (764)
Q Consensus 50 ~~vviI~GeTGSGKTTqvPq 69 (764)
..+++|.|.+||||||+.-.
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~ 22 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCAR 22 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHH
Confidence 34689999999999998654
No 177
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=83.74 E-value=0.32 Score=46.83 Aligned_cols=19 Identities=32% Similarity=0.503 Sum_probs=16.0
Q ss_pred eEEEEecCCCCccccHHHH
Q 038192 52 AVIICGETGCGKTTQVPQF 70 (764)
Q Consensus 52 vviI~GeTGSGKTTqvPq~ 70 (764)
.++|+|..||||||+.-.+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L 20 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLL 20 (197)
T ss_dssp EEEEECSTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 4789999999999987643
No 178
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=83.67 E-value=0.25 Score=49.74 Aligned_cols=22 Identities=27% Similarity=0.480 Sum_probs=18.8
Q ss_pred HcCCeEEEEecCCCCccccHHH
Q 038192 48 NDNSAVIICGETGCGKTTQVPQ 69 (764)
Q Consensus 48 ~~~~vviI~GeTGSGKTTqvPq 69 (764)
..+.++.|.|+.||||||.+=.
T Consensus 32 ~~Ge~~~i~G~nGsGKSTLl~~ 53 (229)
T 2pze_A 32 ERGQLLAVAGSTGAGKTSLLMM 53 (229)
T ss_dssp ETTCEEEEECCTTSSHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHH
Confidence 5678999999999999997653
No 179
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=83.61 E-value=0.33 Score=48.06 Aligned_cols=20 Identities=30% Similarity=0.451 Sum_probs=16.9
Q ss_pred CCeEEEEecCCCCccccHHH
Q 038192 50 NSAVIICGETGCGKTTQVPQ 69 (764)
Q Consensus 50 ~~vviI~GeTGSGKTTqvPq 69 (764)
+.++.|.|++||||||..-.
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~ 24 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKA 24 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHH
Confidence 46789999999999997654
No 180
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=83.53 E-value=0.28 Score=48.10 Aligned_cols=27 Identities=22% Similarity=0.155 Sum_probs=23.4
Q ss_pred HHHcCCeEEEEecCCCCccccHHHHHH
Q 038192 46 AVNDNSAVIICGETGCGKTTQVPQFLF 72 (764)
Q Consensus 46 ~l~~~~vviI~GeTGSGKTTqvPq~Ll 72 (764)
-+..+.+++|.|++||||||..-++..
T Consensus 16 gi~~G~~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 16 GFAPGVLTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp SBCTTSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCcCCEEEEEECCCCCCHHHHHHHHHH
Confidence 345688999999999999999888876
No 181
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=83.50 E-value=0.28 Score=49.12 Aligned_cols=21 Identities=38% Similarity=0.537 Sum_probs=17.6
Q ss_pred cCCeEEEEecCCCCccccHHH
Q 038192 49 DNSAVIICGETGCGKTTQVPQ 69 (764)
Q Consensus 49 ~~~vviI~GeTGSGKTTqvPq 69 (764)
.+.++.|.|+.||||||++-.
T Consensus 19 ~g~~i~i~G~~GsGKSTl~~~ 39 (230)
T 2vp4_A 19 QPFTVLIEGNIGSGKTTYLNH 39 (230)
T ss_dssp CCEEEEEECSTTSCHHHHHHT
T ss_pred CceEEEEECCCCCCHHHHHHH
Confidence 456889999999999998643
No 182
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=83.49 E-value=0.32 Score=46.45 Aligned_cols=19 Identities=32% Similarity=0.511 Sum_probs=16.2
Q ss_pred eEEEEecCCCCccccHHHH
Q 038192 52 AVIICGETGCGKTTQVPQF 70 (764)
Q Consensus 52 vviI~GeTGSGKTTqvPq~ 70 (764)
+++|+|..||||||+.-..
T Consensus 3 ~I~i~G~~GsGKsT~~~~L 21 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKV 21 (194)
T ss_dssp EEEEEECTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 5889999999999987543
No 183
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=83.39 E-value=0.26 Score=50.54 Aligned_cols=23 Identities=35% Similarity=0.589 Sum_probs=19.2
Q ss_pred HHcCCeEEEEecCCCCccccHHH
Q 038192 47 VNDNSAVIICGETGCGKTTQVPQ 69 (764)
Q Consensus 47 l~~~~vviI~GeTGSGKTTqvPq 69 (764)
+..+.++.|.|+.||||||.+=.
T Consensus 30 i~~Ge~~~liG~nGsGKSTLlk~ 52 (257)
T 1g6h_A 30 VNKGDVTLIIGPNGSGKSTLINV 52 (257)
T ss_dssp EETTCEEEEECSTTSSHHHHHHH
T ss_pred EeCCCEEEEECCCCCCHHHHHHH
Confidence 35678999999999999997643
No 184
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=83.32 E-value=0.27 Score=50.23 Aligned_cols=22 Identities=27% Similarity=0.459 Sum_probs=18.9
Q ss_pred HcCCeEEEEecCCCCccccHHH
Q 038192 48 NDNSAVIICGETGCGKTTQVPQ 69 (764)
Q Consensus 48 ~~~~vviI~GeTGSGKTTqvPq 69 (764)
..+.++.|.|++||||||.+=.
T Consensus 33 ~~Ge~~~i~G~nGsGKSTLl~~ 54 (247)
T 2ff7_A 33 KQGEVIGIVGRSGSGKSTLTKL 54 (247)
T ss_dssp ETTCEEEEECSTTSSHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHH
Confidence 4678999999999999998754
No 185
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=83.25 E-value=0.27 Score=50.61 Aligned_cols=23 Identities=26% Similarity=0.436 Sum_probs=19.2
Q ss_pred HHcCCeEEEEecCCCCccccHHH
Q 038192 47 VNDNSAVIICGETGCGKTTQVPQ 69 (764)
Q Consensus 47 l~~~~vviI~GeTGSGKTTqvPq 69 (764)
+..+.++.|.|+.||||||.+=.
T Consensus 29 i~~Ge~~~liG~nGsGKSTLlk~ 51 (262)
T 1b0u_A 29 ARAGDVISIIGSSGSGKSTFLRC 51 (262)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHH
T ss_pred EcCCCEEEEECCCCCCHHHHHHH
Confidence 35678999999999999997653
No 186
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=83.20 E-value=0.34 Score=46.29 Aligned_cols=19 Identities=37% Similarity=0.606 Sum_probs=16.1
Q ss_pred CeEEEEecCCCCccccHHH
Q 038192 51 SAVIICGETGCGKTTQVPQ 69 (764)
Q Consensus 51 ~vviI~GeTGSGKTTqvPq 69 (764)
.+++|+|..||||||+.-.
T Consensus 7 ~~I~l~G~~GsGKsT~~~~ 25 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCAN 25 (194)
T ss_dssp EEEEEEESTTSSHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHH
Confidence 4789999999999997654
No 187
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=83.17 E-value=0.31 Score=46.15 Aligned_cols=20 Identities=20% Similarity=0.494 Sum_probs=17.0
Q ss_pred CCeEEEEecCCCCccccHHH
Q 038192 50 NSAVIICGETGCGKTTQVPQ 69 (764)
Q Consensus 50 ~~vviI~GeTGSGKTTqvPq 69 (764)
+.+++|+|+.||||||+.-.
T Consensus 8 g~~i~l~G~~GsGKSTl~~~ 27 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASE 27 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHH
Confidence 46889999999999997654
No 188
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=83.03 E-value=0.28 Score=49.81 Aligned_cols=23 Identities=35% Similarity=0.544 Sum_probs=19.1
Q ss_pred HHcCCeEEEEecCCCCccccHHH
Q 038192 47 VNDNSAVIICGETGCGKTTQVPQ 69 (764)
Q Consensus 47 l~~~~vviI~GeTGSGKTTqvPq 69 (764)
+..+.++.|.|+.||||||.+=.
T Consensus 29 i~~Ge~~~l~G~nGsGKSTLl~~ 51 (240)
T 1ji0_A 29 VPRGQIVTLIGANGAGKTTTLSA 51 (240)
T ss_dssp EETTCEEEEECSTTSSHHHHHHH
T ss_pred EcCCCEEEEECCCCCCHHHHHHH
Confidence 35678999999999999997643
No 189
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=82.98 E-value=0.39 Score=45.48 Aligned_cols=19 Identities=26% Similarity=0.469 Sum_probs=16.1
Q ss_pred CCeEEEEecCCCCccccHH
Q 038192 50 NSAVIICGETGCGKTTQVP 68 (764)
Q Consensus 50 ~~vviI~GeTGSGKTTqvP 68 (764)
+.+++++|..||||||.--
T Consensus 3 ~~~i~l~G~~GsGKST~a~ 21 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVR 21 (178)
T ss_dssp CCEEEEECCTTSSHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHH
Confidence 4678999999999998654
No 190
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=82.95 E-value=0.33 Score=46.52 Aligned_cols=21 Identities=29% Similarity=0.471 Sum_probs=17.4
Q ss_pred CCeEEEEecCCCCccccHHHH
Q 038192 50 NSAVIICGETGCGKTTQVPQF 70 (764)
Q Consensus 50 ~~vviI~GeTGSGKTTqvPq~ 70 (764)
..+++++|..||||||+.-..
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L 25 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQAL 25 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHH
Confidence 457899999999999987543
No 191
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=82.95 E-value=0.28 Score=50.40 Aligned_cols=23 Identities=26% Similarity=0.482 Sum_probs=19.4
Q ss_pred HHcCCeEEEEecCCCCccccHHH
Q 038192 47 VNDNSAVIICGETGCGKTTQVPQ 69 (764)
Q Consensus 47 l~~~~vviI~GeTGSGKTTqvPq 69 (764)
+..+.++.|.|++||||||.+=.
T Consensus 43 i~~Ge~~~i~G~nGsGKSTLl~~ 65 (260)
T 2ghi_A 43 IPSGTTCALVGHTGSGKSTIAKL 65 (260)
T ss_dssp ECTTCEEEEECSTTSSHHHHHHH
T ss_pred ECCCCEEEEECCCCCCHHHHHHH
Confidence 35688999999999999997654
No 192
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=82.83 E-value=0.25 Score=50.25 Aligned_cols=23 Identities=30% Similarity=0.466 Sum_probs=19.1
Q ss_pred HHcCCeEEEEecCCCCccccHHH
Q 038192 47 VNDNSAVIICGETGCGKTTQVPQ 69 (764)
Q Consensus 47 l~~~~vviI~GeTGSGKTTqvPq 69 (764)
+..+.++.|.|++||||||.+=.
T Consensus 25 i~~Ge~~~i~G~nGsGKSTLl~~ 47 (243)
T 1mv5_A 25 AQPNSIIAFAGPSGGGKSTIFSL 47 (243)
T ss_dssp ECTTEEEEEECCTTSSHHHHHHH
T ss_pred EcCCCEEEEECCCCCCHHHHHHH
Confidence 35678899999999999997643
No 193
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=82.82 E-value=0.53 Score=45.98 Aligned_cols=28 Identities=25% Similarity=0.186 Sum_probs=20.3
Q ss_pred HHHHHHHc-----CCeEEEEecCCCCccccHHH
Q 038192 42 EIMEAVND-----NSAVIICGETGCGKTTQVPQ 69 (764)
Q Consensus 42 ~Il~~l~~-----~~vviI~GeTGSGKTTqvPq 69 (764)
++.+.+.. ..++.|+|++||||||..-.
T Consensus 9 ~l~~~~~~~~~~~~~~i~i~G~~GsGKstl~~~ 41 (201)
T 1rz3_A 9 FLCKTILAIKTAGRLVLGIDGLSRSGKTTLANQ 41 (201)
T ss_dssp HHHHHHHTSCCSSSEEEEEEECTTSSHHHHHHH
T ss_pred HHHHHHHHhccCCCeEEEEECCCCCCHHHHHHH
Confidence 35555543 35889999999999997643
No 194
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=82.80 E-value=1.1 Score=46.90 Aligned_cols=56 Identities=18% Similarity=0.209 Sum_probs=35.6
Q ss_pred CCeEEEEecCCCCccccHHHHHHHhccCCCCCCCCCceEEEecccHHHHHHHHHHHHHHhC
Q 038192 50 NSAVIICGETGCGKTTQVPQFLFEAGFGSNRCSSRSGRIGVTQPRRVAVLATAKRVAFELG 110 (764)
Q Consensus 50 ~~vviI~GeTGSGKTTqvPq~Lle~~~~~~~~~~~~~~Ii~tQPRRiaAisvA~RVa~E~g 110 (764)
..++++.|.+|+||||.+-........... ...++-.-|+|-+|...-+..+...|
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~-----~v~l~~~D~~r~~a~~ql~~~~~~~~ 153 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGF-----KVGLVGADVYRPAALEQLQQLGQQIG 153 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHTTC-----CEEEEECCCSSSHHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCC-----eEEEEecCCCCHHHHHHHHHHhccCC
Confidence 347888999999999987665433222111 25566777888877654444444444
No 195
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=82.78 E-value=0.29 Score=50.03 Aligned_cols=23 Identities=26% Similarity=0.333 Sum_probs=19.3
Q ss_pred HHcCCeEEEEecCCCCccccHHH
Q 038192 47 VNDNSAVIICGETGCGKTTQVPQ 69 (764)
Q Consensus 47 l~~~~vviI~GeTGSGKTTqvPq 69 (764)
+..+.++.|.|+.||||||.+=.
T Consensus 26 i~~Ge~~~l~G~nGsGKSTLlk~ 48 (250)
T 2d2e_A 26 VPKGEVHALMGPNGAGKSTLGKI 48 (250)
T ss_dssp EETTCEEEEECSTTSSHHHHHHH
T ss_pred EcCCCEEEEECCCCCCHHHHHHH
Confidence 35678999999999999998654
No 196
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=82.76 E-value=0.65 Score=51.48 Aligned_cols=45 Identities=24% Similarity=0.321 Sum_probs=34.7
Q ss_pred CCeEEEEecCCCCccccHHHHHHHhccCCCCCCCCCceEEEecccHHHHHHHHHHHH
Q 038192 50 NSAVIICGETGCGKTTQVPQFLFEAGFGSNRCSSRSGRIGVTQPRRVAVLATAKRVA 106 (764)
Q Consensus 50 ~~vviI~GeTGSGKTTqvPq~Lle~~~~~~~~~~~~~~Ii~tQPRRiaAisvA~RVa 106 (764)
.++.+|.|..||||||.+-+.+- . .++++.-|++.+|..+-+++.
T Consensus 161 ~~v~~I~G~aGsGKTt~I~~~~~-----~-------~~~lVlTpT~~aa~~l~~kl~ 205 (446)
T 3vkw_A 161 AKVVLVDGVPGCGKTKEILSRVN-----F-------EEDLILVPGRQAAEMIRRRAN 205 (446)
T ss_dssp SEEEEEEECTTSCHHHHHHHHCC-----T-------TTCEEEESCHHHHHHHHHHHT
T ss_pred ccEEEEEcCCCCCHHHHHHHHhc-----c-------CCeEEEeCCHHHHHHHHHHhh
Confidence 35889999999999998765431 1 246788899999988877774
No 197
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=82.75 E-value=0.37 Score=46.59 Aligned_cols=18 Identities=33% Similarity=0.586 Sum_probs=15.6
Q ss_pred eEEEEecCCCCccccHHH
Q 038192 52 AVIICGETGCGKTTQVPQ 69 (764)
Q Consensus 52 vviI~GeTGSGKTTqvPq 69 (764)
.++|.|..||||||+.-.
T Consensus 2 ~I~i~G~~GsGKsT~~~~ 19 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAE 19 (205)
T ss_dssp EEEEECCTTSCHHHHHHH
T ss_pred EEEEECCCccCHHHHHHH
Confidence 578999999999998754
No 198
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=82.66 E-value=0.39 Score=48.54 Aligned_cols=22 Identities=27% Similarity=0.360 Sum_probs=18.3
Q ss_pred CCeEEEEecCCCCccccHHHHH
Q 038192 50 NSAVIICGETGCGKTTQVPQFL 71 (764)
Q Consensus 50 ~~vviI~GeTGSGKTTqvPq~L 71 (764)
..+++|.|+.||||||+.=...
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La 48 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIA 48 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 4789999999999999876543
No 199
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=82.63 E-value=0.3 Score=50.46 Aligned_cols=23 Identities=30% Similarity=0.432 Sum_probs=19.5
Q ss_pred HHcCCeEEEEecCCCCccccHHH
Q 038192 47 VNDNSAVIICGETGCGKTTQVPQ 69 (764)
Q Consensus 47 l~~~~vviI~GeTGSGKTTqvPq 69 (764)
+..+.++.|.|++||||||.+=.
T Consensus 43 i~~Ge~~~l~G~NGsGKSTLlk~ 65 (267)
T 2zu0_C 43 VHPGEVHAIMGPNGSGKSTLSAT 65 (267)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHH
T ss_pred EcCCCEEEEECCCCCCHHHHHHH
Confidence 45688999999999999998654
No 200
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=82.61 E-value=0.37 Score=49.24 Aligned_cols=18 Identities=39% Similarity=0.396 Sum_probs=15.2
Q ss_pred eEEEEecCCCCccccHHH
Q 038192 52 AVIICGETGCGKTTQVPQ 69 (764)
Q Consensus 52 vviI~GeTGSGKTTqvPq 69 (764)
+++|+|+|||||||.--+
T Consensus 3 li~I~G~~GSGKSTla~~ 20 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQ 20 (253)
T ss_dssp EEEEECCTTSSHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHH
Confidence 688999999999996544
No 201
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=82.59 E-value=0.34 Score=47.15 Aligned_cols=19 Identities=21% Similarity=0.529 Sum_probs=16.3
Q ss_pred CeEEEEecCCCCccccHHH
Q 038192 51 SAVIICGETGCGKTTQVPQ 69 (764)
Q Consensus 51 ~vviI~GeTGSGKTTqvPq 69 (764)
.+++|+|..||||||+.-.
T Consensus 19 ~~I~l~G~~GsGKSTla~~ 37 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVGEA 37 (202)
T ss_dssp SCEEEECSTTSCHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHH
Confidence 4799999999999997654
No 202
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=82.58 E-value=0.29 Score=50.53 Aligned_cols=23 Identities=30% Similarity=0.492 Sum_probs=19.3
Q ss_pred HHcCCeEEEEecCCCCccccHHH
Q 038192 47 VNDNSAVIICGETGCGKTTQVPQ 69 (764)
Q Consensus 47 l~~~~vviI~GeTGSGKTTqvPq 69 (764)
+..+.++.|.|++||||||.+=.
T Consensus 34 i~~Ge~~~liG~nGsGKSTLl~~ 56 (266)
T 4g1u_C 34 IASGEMVAIIGPNGAGKSTLLRL 56 (266)
T ss_dssp EETTCEEEEECCTTSCHHHHHHH
T ss_pred EcCCCEEEEECCCCCcHHHHHHH
Confidence 35678999999999999997653
No 203
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=82.55 E-value=0.4 Score=45.55 Aligned_cols=20 Identities=30% Similarity=0.426 Sum_probs=13.0
Q ss_pred CCeEEEEecCCCCccccHHH
Q 038192 50 NSAVIICGETGCGKTTQVPQ 69 (764)
Q Consensus 50 ~~vviI~GeTGSGKTTqvPq 69 (764)
..+++|+|..||||||+.-.
T Consensus 5 ~~~I~l~G~~GsGKST~a~~ 24 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHT 24 (183)
T ss_dssp CCEEEEECCC----CHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHH
Confidence 46789999999999998654
No 204
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=82.55 E-value=0.37 Score=47.49 Aligned_cols=28 Identities=25% Similarity=0.425 Sum_probs=22.9
Q ss_pred HHHcCCeEEEEecCCCCccccHHHHHHH
Q 038192 46 AVNDNSAVIICGETGCGKTTQVPQFLFE 73 (764)
Q Consensus 46 ~l~~~~vviI~GeTGSGKTTqvPq~Lle 73 (764)
-+..+.+++|.|++||||||.+-++...
T Consensus 19 gi~~G~~~~i~G~~GsGKTtl~~~l~~~ 46 (235)
T 2w0m_A 19 GIPQGFFIALTGEPGTGKTIFSLHFIAK 46 (235)
T ss_dssp SEETTCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCcCCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 3456789999999999999988777643
No 205
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=82.46 E-value=0.22 Score=48.76 Aligned_cols=19 Identities=37% Similarity=0.541 Sum_probs=16.5
Q ss_pred eEEEEecCCCCccccHHHH
Q 038192 52 AVIICGETGCGKTTQVPQF 70 (764)
Q Consensus 52 vviI~GeTGSGKTTqvPq~ 70 (764)
+++|.|..||||||++-..
T Consensus 2 ~I~i~G~~GsGKsTl~~~L 20 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKL 20 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHH
Confidence 6889999999999998654
No 206
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=82.43 E-value=0.31 Score=50.09 Aligned_cols=23 Identities=26% Similarity=0.455 Sum_probs=19.2
Q ss_pred HHcCCeEEEEecCCCCccccHHH
Q 038192 47 VNDNSAVIICGETGCGKTTQVPQ 69 (764)
Q Consensus 47 l~~~~vviI~GeTGSGKTTqvPq 69 (764)
+..+.++.|.|+.||||||.+=.
T Consensus 38 i~~Gei~~l~G~NGsGKSTLlk~ 60 (256)
T 1vpl_A 38 IEEGEIFGLIGPNGAGKTTTLRI 60 (256)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHH
T ss_pred EcCCcEEEEECCCCCCHHHHHHH
Confidence 35678999999999999997643
No 207
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=82.39 E-value=0.31 Score=50.30 Aligned_cols=23 Identities=26% Similarity=0.570 Sum_probs=19.2
Q ss_pred HHcCCeEEEEecCCCCccccHHH
Q 038192 47 VNDNSAVIICGETGCGKTTQVPQ 69 (764)
Q Consensus 47 l~~~~vviI~GeTGSGKTTqvPq 69 (764)
+..+.++.|.|+.||||||.+=.
T Consensus 47 i~~Gei~~liG~NGsGKSTLlk~ 69 (263)
T 2olj_A 47 IREGEVVVVIGPSGSGKSTFLRC 69 (263)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHH
T ss_pred EcCCCEEEEEcCCCCcHHHHHHH
Confidence 35678999999999999997653
No 208
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=82.36 E-value=0.37 Score=45.93 Aligned_cols=20 Identities=35% Similarity=0.451 Sum_probs=16.8
Q ss_pred cCCeEEEEecCCCCccccHH
Q 038192 49 DNSAVIICGETGCGKTTQVP 68 (764)
Q Consensus 49 ~~~vviI~GeTGSGKTTqvP 68 (764)
.+.+++++|..||||||+.-
T Consensus 4 ~g~~i~l~G~~GsGKST~~~ 23 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSM 23 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHH
Confidence 45678999999999999754
No 209
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=82.34 E-value=0.38 Score=45.81 Aligned_cols=21 Identities=29% Similarity=0.406 Sum_probs=17.6
Q ss_pred cCCeEEEEecCCCCccccHHH
Q 038192 49 DNSAVIICGETGCGKTTQVPQ 69 (764)
Q Consensus 49 ~~~vviI~GeTGSGKTTqvPq 69 (764)
...+++|+|.+||||||+.-.
T Consensus 10 ~~~~i~i~G~~GsGKst~~~~ 30 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGKE 30 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHHH
T ss_pred cCCeEEEEeCCCCCHHHHHHH
Confidence 456789999999999997654
No 210
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=82.16 E-value=0.4 Score=46.24 Aligned_cols=18 Identities=56% Similarity=0.826 Sum_probs=15.1
Q ss_pred eEEEEecCCCCccccHHH
Q 038192 52 AVIICGETGCGKTTQVPQ 69 (764)
Q Consensus 52 vviI~GeTGSGKTTqvPq 69 (764)
.+.|.|++||||||.+=.
T Consensus 2 ~i~l~G~nGsGKTTLl~~ 19 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKK 19 (178)
T ss_dssp EEEEECCTTSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 478899999999997643
No 211
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=82.12 E-value=0.38 Score=46.05 Aligned_cols=18 Identities=39% Similarity=0.523 Sum_probs=15.5
Q ss_pred eEEEEecCCCCccccHHH
Q 038192 52 AVIICGETGCGKTTQVPQ 69 (764)
Q Consensus 52 vviI~GeTGSGKTTqvPq 69 (764)
+++|+|..||||||+.-.
T Consensus 2 ~I~l~G~~GsGKsT~~~~ 19 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKK 19 (195)
T ss_dssp EEEEECSTTSCHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 578999999999998644
No 212
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=82.01 E-value=0.32 Score=46.74 Aligned_cols=20 Identities=35% Similarity=0.589 Sum_probs=16.9
Q ss_pred CeEEEEecCCCCccccHHHH
Q 038192 51 SAVIICGETGCGKTTQVPQF 70 (764)
Q Consensus 51 ~vviI~GeTGSGKTTqvPq~ 70 (764)
.+++|.|++||||||..-..
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L 22 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRL 22 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHH
Confidence 47889999999999977654
No 213
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=82.01 E-value=1 Score=44.28 Aligned_cols=24 Identities=17% Similarity=0.216 Sum_probs=19.1
Q ss_pred cCCeEEEEecCCCCccccHHHHHH
Q 038192 49 DNSAVIICGETGCGKTTQVPQFLF 72 (764)
Q Consensus 49 ~~~vviI~GeTGSGKTTqvPq~Ll 72 (764)
....++|.|++||||||.+=.+.-
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~ 74 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACA 74 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHH
Confidence 367899999999999997655443
No 214
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=82.00 E-value=0.31 Score=47.68 Aligned_cols=22 Identities=32% Similarity=0.336 Sum_probs=17.8
Q ss_pred HcCCeEEEEecCCCCccccHHH
Q 038192 48 NDNSAVIICGETGCGKTTQVPQ 69 (764)
Q Consensus 48 ~~~~vviI~GeTGSGKTTqvPq 69 (764)
....++.|+|++||||||..-.
T Consensus 19 ~~~~~i~i~G~~GsGKSTl~~~ 40 (207)
T 2qt1_A 19 SKTFIIGISGVTNSGKTTLAKN 40 (207)
T ss_dssp CCCEEEEEEESTTSSHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHH
Confidence 4456889999999999997643
No 215
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=81.96 E-value=0.33 Score=50.30 Aligned_cols=23 Identities=22% Similarity=0.388 Sum_probs=19.4
Q ss_pred HHcCCeEEEEecCCCCccccHHH
Q 038192 47 VNDNSAVIICGETGCGKTTQVPQ 69 (764)
Q Consensus 47 l~~~~vviI~GeTGSGKTTqvPq 69 (764)
+..+.++.|.|+.||||||.+=.
T Consensus 42 i~~Ge~~~i~G~nGsGKSTLlk~ 64 (271)
T 2ixe_A 42 LYPGKVTALVGPNGSGKSTVAAL 64 (271)
T ss_dssp ECTTCEEEEECSTTSSHHHHHHH
T ss_pred ECCCCEEEEECCCCCCHHHHHHH
Confidence 45688999999999999997643
No 216
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=81.95 E-value=0.38 Score=50.95 Aligned_cols=19 Identities=37% Similarity=0.441 Sum_probs=15.8
Q ss_pred CCeEEEEecCCCCccccHH
Q 038192 50 NSAVIICGETGCGKTTQVP 68 (764)
Q Consensus 50 ~~vviI~GeTGSGKTTqvP 68 (764)
..+++|+|+|||||||..-
T Consensus 3 ~~~i~i~GptgsGKt~la~ 21 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSV 21 (322)
T ss_dssp CEEEEEECCTTSCHHHHHH
T ss_pred CcEEEEECCCcCCHHHHHH
Confidence 4578999999999997543
No 217
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=81.89 E-value=0.33 Score=50.08 Aligned_cols=23 Identities=30% Similarity=0.689 Sum_probs=19.1
Q ss_pred HHcCCeEEEEecCCCCccccHHH
Q 038192 47 VNDNSAVIICGETGCGKTTQVPQ 69 (764)
Q Consensus 47 l~~~~vviI~GeTGSGKTTqvPq 69 (764)
+..+.++.|.|+.||||||.+=.
T Consensus 30 i~~Ge~~~liG~nGsGKSTLl~~ 52 (266)
T 2yz2_A 30 INEGECLLVAGNTGSGKSTLLQI 52 (266)
T ss_dssp ECTTCEEEEECSTTSSHHHHHHH
T ss_pred EcCCCEEEEECCCCCcHHHHHHH
Confidence 35678999999999999997643
No 218
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=81.89 E-value=0.85 Score=47.80 Aligned_cols=31 Identities=23% Similarity=0.414 Sum_probs=24.5
Q ss_pred HHHHHHcCCeEEEEecCCCCccccHHHHHHH
Q 038192 43 IMEAVNDNSAVIICGETGCGKTTQVPQFLFE 73 (764)
Q Consensus 43 Il~~l~~~~vviI~GeTGSGKTTqvPq~Lle 73 (764)
+.+++..+++++|.|+.|+||||.+=++.-+
T Consensus 24 L~~~l~~~~~v~i~G~~G~GKT~Ll~~~~~~ 54 (350)
T 2qen_A 24 LEESLENYPLTLLLGIRRVGKSSLLRAFLNE 54 (350)
T ss_dssp HHHHHHHCSEEEEECCTTSSHHHHHHHHHHH
T ss_pred HHHHHhcCCeEEEECCCcCCHHHHHHHHHHH
Confidence 5555555689999999999999988776543
No 219
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=81.82 E-value=0.33 Score=50.55 Aligned_cols=23 Identities=30% Similarity=0.452 Sum_probs=19.3
Q ss_pred HHcCCeEEEEecCCCCccccHHH
Q 038192 47 VNDNSAVIICGETGCGKTTQVPQ 69 (764)
Q Consensus 47 l~~~~vviI~GeTGSGKTTqvPq 69 (764)
+..+.++.|.|+.||||||.+=.
T Consensus 44 i~~Ge~~~liG~NGsGKSTLlk~ 66 (279)
T 2ihy_A 44 IAKGDKWILYGLNGAGKTTLLNI 66 (279)
T ss_dssp EETTCEEEEECCTTSSHHHHHHH
T ss_pred EcCCCEEEEECCCCCcHHHHHHH
Confidence 45688999999999999997643
No 220
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=81.82 E-value=0.45 Score=46.41 Aligned_cols=22 Identities=23% Similarity=0.321 Sum_probs=18.1
Q ss_pred cCCeEEEEecCCCCccccHHHH
Q 038192 49 DNSAVIICGETGCGKTTQVPQF 70 (764)
Q Consensus 49 ~~~vviI~GeTGSGKTTqvPq~ 70 (764)
.+.+++|+|..||||||+.-.+
T Consensus 9 ~~~~I~l~G~~GsGKST~~~~L 30 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSKLL 30 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHHHH
T ss_pred cCCEEEEEcCCCCCHHHHHHHH
Confidence 4568999999999999986543
No 221
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=81.76 E-value=0.4 Score=46.59 Aligned_cols=20 Identities=35% Similarity=0.632 Sum_probs=16.8
Q ss_pred CeEEEEecCCCCccccHHHH
Q 038192 51 SAVIICGETGCGKTTQVPQF 70 (764)
Q Consensus 51 ~vviI~GeTGSGKTTqvPq~ 70 (764)
.+++|+|..||||||+.-.+
T Consensus 16 ~~I~l~G~~GsGKsT~~~~L 35 (203)
T 1ukz_A 16 SVIFVLGGPGAGKGTQCEKL 35 (203)
T ss_dssp EEEEEECSTTSSHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 36889999999999987554
No 222
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=81.58 E-value=0.34 Score=49.65 Aligned_cols=23 Identities=30% Similarity=0.687 Sum_probs=19.2
Q ss_pred HHcCCeEEEEecCCCCccccHHH
Q 038192 47 VNDNSAVIICGETGCGKTTQVPQ 69 (764)
Q Consensus 47 l~~~~vviI~GeTGSGKTTqvPq 69 (764)
+..+.++.|.|+.||||||.+=.
T Consensus 28 i~~Ge~~~l~G~nGsGKSTLl~~ 50 (253)
T 2nq2_C 28 LNKGDILAVLGQNGCGKSTLLDL 50 (253)
T ss_dssp EETTCEEEEECCSSSSHHHHHHH
T ss_pred ECCCCEEEEECCCCCCHHHHHHH
Confidence 35678999999999999997653
No 223
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=81.47 E-value=0.95 Score=48.81 Aligned_cols=22 Identities=32% Similarity=0.564 Sum_probs=18.1
Q ss_pred CCeEEEEecCCCCccccHHHHH
Q 038192 50 NSAVIICGETGCGKTTQVPQFL 71 (764)
Q Consensus 50 ~~vviI~GeTGSGKTTqvPq~L 71 (764)
+.++.+.|++||||||.+-...
T Consensus 157 g~vi~lvG~nGsGKTTll~~La 178 (359)
T 2og2_A 157 PAVIMIVGVNGGGKTTSLGKLA 178 (359)
T ss_dssp SEEEEEECCTTSCHHHHHHHHH
T ss_pred CeEEEEEcCCCChHHHHHHHHH
Confidence 4588999999999999876543
No 224
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=81.23 E-value=0.41 Score=45.00 Aligned_cols=19 Identities=32% Similarity=0.664 Sum_probs=15.8
Q ss_pred CeEEEEecCCCCccccHHH
Q 038192 51 SAVIICGETGCGKTTQVPQ 69 (764)
Q Consensus 51 ~vviI~GeTGSGKTTqvPq 69 (764)
.+++|+|..||||||+.-.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~ 21 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRE 21 (173)
T ss_dssp CCEEEESCTTSSHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHH
Confidence 4689999999999997643
No 225
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=81.22 E-value=0.7 Score=48.78 Aligned_cols=38 Identities=13% Similarity=0.040 Sum_probs=29.9
Q ss_pred hHHHHHHHHHcCCeEEEEecCCCCccccHHHHHHHhcc
Q 038192 39 MEQEIMEAVNDNSAVIICGETGCGKTTQVPQFLFEAGF 76 (764)
Q Consensus 39 ~~~~Il~~l~~~~vviI~GeTGSGKTTqvPq~Lle~~~ 76 (764)
.-+.++--+..+++++|.|.+|+||||..-|+.+..+.
T Consensus 57 ~LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~~~a~ 94 (315)
T 3bh0_A 57 ELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSD 94 (315)
T ss_dssp HHHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred HHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 34455544667899999999999999999998877554
No 226
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=81.16 E-value=0.83 Score=48.49 Aligned_cols=18 Identities=28% Similarity=0.372 Sum_probs=15.7
Q ss_pred eEEEEecCCCCccccHHH
Q 038192 52 AVIICGETGCGKTTQVPQ 69 (764)
Q Consensus 52 vviI~GeTGSGKTTqvPq 69 (764)
++.|.|++||||||..-.
T Consensus 94 iigI~GpsGSGKSTl~~~ 111 (321)
T 3tqc_A 94 IIGIAGSVAVGKSTTSRV 111 (321)
T ss_dssp EEEEECCTTSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 889999999999998643
No 227
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=81.15 E-value=0.36 Score=49.37 Aligned_cols=23 Identities=26% Similarity=0.510 Sum_probs=19.1
Q ss_pred HHcCCeEEEEecCCCCccccHHH
Q 038192 47 VNDNSAVIICGETGCGKTTQVPQ 69 (764)
Q Consensus 47 l~~~~vviI~GeTGSGKTTqvPq 69 (764)
+..+.++.|.|+.||||||.+=.
T Consensus 23 i~~Ge~~~liG~NGsGKSTLlk~ 45 (249)
T 2qi9_C 23 VRAGEILHLVGPNGAGKSTLLAR 45 (249)
T ss_dssp EETTCEEEEECCTTSSHHHHHHH
T ss_pred EcCCCEEEEECCCCCcHHHHHHH
Confidence 35678899999999999997643
No 228
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=81.12 E-value=0.43 Score=46.84 Aligned_cols=19 Identities=37% Similarity=0.632 Sum_probs=15.8
Q ss_pred eEEEEecCCCCccccHHHH
Q 038192 52 AVIICGETGCGKTTQVPQF 70 (764)
Q Consensus 52 vviI~GeTGSGKTTqvPq~ 70 (764)
.++|+|..||||||+.-.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L 20 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQI 20 (216)
T ss_dssp EEEEECSTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 3788999999999987654
No 229
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=80.90 E-value=0.69 Score=50.95 Aligned_cols=42 Identities=17% Similarity=0.388 Sum_probs=30.5
Q ss_pred CCeEEEEecCCCCccccHHHHHHHhccCCCCCCCCCceEEEecccHHHH
Q 038192 50 NSAVIICGETGCGKTTQVPQFLFEAGFGSNRCSSRSGRIGVTQPRRVAV 98 (764)
Q Consensus 50 ~~vviI~GeTGSGKTTqvPq~Lle~~~~~~~~~~~~~~Ii~tQPRRiaA 98 (764)
+..++|.|.||||||+.+...+..... .+ ..++|.-|.....
T Consensus 53 ~~h~~i~G~tGsGKs~~~~~li~~~~~-~g------~~viv~Dpkge~~ 94 (437)
T 1e9r_A 53 PRHLLVNGATGTGKSVLLRELAYTGLL-RG------DRMVIVDPNGDML 94 (437)
T ss_dssp GGCEEEEECTTSSHHHHHHHHHHHHHH-TT------CEEEEEEETTHHH
T ss_pred cceEEEECCCCCCHHHHHHHHHHHHHH-CC------CcEEEEeCCCchh
Confidence 556899999999999987665554322 11 4788899987754
No 230
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=80.84 E-value=0.48 Score=49.97 Aligned_cols=25 Identities=12% Similarity=0.305 Sum_probs=20.5
Q ss_pred HHHcCCeEEEEecCCCCccccHHHH
Q 038192 46 AVNDNSAVIICGETGCGKTTQVPQF 70 (764)
Q Consensus 46 ~l~~~~vviI~GeTGSGKTTqvPq~ 70 (764)
.|..+.++.|.|++||||||.+=..
T Consensus 122 ~i~~Ge~vaIvGpsGsGKSTLl~lL 146 (305)
T 2v9p_A 122 GIPKKNCLAFIGPPNTGKSMLCNSL 146 (305)
T ss_dssp TCTTCSEEEEECSSSSSHHHHHHHH
T ss_pred EecCCCEEEEECCCCCcHHHHHHHH
Confidence 3567899999999999999986543
No 231
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=80.84 E-value=0.5 Score=46.11 Aligned_cols=22 Identities=23% Similarity=0.430 Sum_probs=18.5
Q ss_pred cCCeEEEEecCCCCccccHHHH
Q 038192 49 DNSAVIICGETGCGKTTQVPQF 70 (764)
Q Consensus 49 ~~~vviI~GeTGSGKTTqvPq~ 70 (764)
.+.+++|+|..||||||+.-.+
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~L 29 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQSRKL 29 (215)
T ss_dssp CCCEEEEEESTTSSHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHH
Confidence 4568999999999999987654
No 232
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=80.82 E-value=0.6 Score=47.52 Aligned_cols=28 Identities=29% Similarity=0.306 Sum_probs=20.0
Q ss_pred HHHcCCeEEEEecCCCCccccHHHHHHHh
Q 038192 46 AVNDNSAVIICGETGCGKTTQVPQFLFEA 74 (764)
Q Consensus 46 ~l~~~~vviI~GeTGSGKTTqvPq~Lle~ 74 (764)
+...+..++|.|++|||||+. -+.|...
T Consensus 25 ~~~~~~~vll~G~~GtGKt~l-a~~i~~~ 52 (265)
T 2bjv_A 25 LAPLDKPVLIIGERGTGKELI-ASRLHYL 52 (265)
T ss_dssp HTTSCSCEEEECCTTSCHHHH-HHHHHHT
T ss_pred HhCCCCCEEEECCCCCcHHHH-HHHHHHh
Confidence 344566789999999999964 4555544
No 233
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=80.82 E-value=0.43 Score=46.39 Aligned_cols=21 Identities=24% Similarity=0.401 Sum_probs=17.6
Q ss_pred CCeEEEEecCCCCccccHHHH
Q 038192 50 NSAVIICGETGCGKTTQVPQF 70 (764)
Q Consensus 50 ~~vviI~GeTGSGKTTqvPq~ 70 (764)
+..++|.|..||||||+.-..
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L 24 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLL 24 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHH
Confidence 457899999999999987654
No 234
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=80.68 E-value=0.44 Score=50.89 Aligned_cols=19 Identities=26% Similarity=0.487 Sum_probs=15.6
Q ss_pred CCeEEEEecCCCCccccHH
Q 038192 50 NSAVIICGETGCGKTTQVP 68 (764)
Q Consensus 50 ~~vviI~GeTGSGKTTqvP 68 (764)
..+++|+|+|||||||.--
T Consensus 40 ~~lIvI~GPTgsGKTtLa~ 58 (339)
T 3a8t_A 40 EKLLVLMGATGTGKSRLSI 58 (339)
T ss_dssp CEEEEEECSTTSSHHHHHH
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 3589999999999997543
No 235
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=80.62 E-value=0.26 Score=52.00 Aligned_cols=22 Identities=27% Similarity=0.501 Sum_probs=19.0
Q ss_pred HHcCCeEEEEecCCCCccccHH
Q 038192 47 VNDNSAVIICGETGCGKTTQVP 68 (764)
Q Consensus 47 l~~~~vviI~GeTGSGKTTqvP 68 (764)
|..+.++.|.|++||||||.+-
T Consensus 77 i~~Ge~vaivG~sGsGKSTLl~ 98 (306)
T 3nh6_A 77 VMPGQTLALVGPSGAGKSTILR 98 (306)
T ss_dssp ECTTCEEEEESSSCHHHHHHHH
T ss_pred EcCCCEEEEECCCCchHHHHHH
Confidence 3567899999999999999874
No 236
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=80.61 E-value=0.94 Score=47.66 Aligned_cols=22 Identities=32% Similarity=0.587 Sum_probs=18.5
Q ss_pred CCeEEEEecCCCCccccHHHHH
Q 038192 50 NSAVIICGETGCGKTTQVPQFL 71 (764)
Q Consensus 50 ~~vviI~GeTGSGKTTqvPq~L 71 (764)
..++.|.|++||||||.+-...
T Consensus 102 g~vi~lvG~nGsGKTTll~~La 123 (304)
T 1rj9_A 102 GRVVLVVGVNGVGKTTTIAKLG 123 (304)
T ss_dssp SSEEEEECSTTSSHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHH
Confidence 5689999999999999876543
No 237
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=80.54 E-value=0.72 Score=48.95 Aligned_cols=31 Identities=19% Similarity=0.425 Sum_probs=23.9
Q ss_pred HHHHHHHHHcCCe--EEEEecCCCCccccHHHH
Q 038192 40 EQEIMEAVNDNSA--VIICGETGCGKTTQVPQF 70 (764)
Q Consensus 40 ~~~Il~~l~~~~v--viI~GeTGSGKTTqvPq~ 70 (764)
.+.+...++++++ +++.|++||||||.+=.+
T Consensus 34 ~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~l 66 (340)
T 1sxj_C 34 ITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVAL 66 (340)
T ss_dssp HHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHH
T ss_pred HHHHHHHHhcCCCceEEEECCCCCCHHHHHHHH
Confidence 3455667777877 999999999999876443
No 238
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=80.54 E-value=0.52 Score=45.32 Aligned_cols=24 Identities=25% Similarity=0.486 Sum_probs=18.4
Q ss_pred CCeEEEEecCCCCccccHHHHHHHh
Q 038192 50 NSAVIICGETGCGKTTQVPQFLFEA 74 (764)
Q Consensus 50 ~~vviI~GeTGSGKTTqvPq~Lle~ 74 (764)
..+++|+|..||||||..- .|.+.
T Consensus 10 ~~~I~l~G~~GsGKSTv~~-~La~~ 33 (184)
T 1y63_A 10 GINILITGTPGTGKTSMAE-MIAAE 33 (184)
T ss_dssp SCEEEEECSTTSSHHHHHH-HHHHH
T ss_pred CCEEEEECCCCCCHHHHHH-HHHHh
Confidence 4679999999999999764 44443
No 239
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=80.49 E-value=0.52 Score=46.56 Aligned_cols=21 Identities=33% Similarity=0.675 Sum_probs=17.1
Q ss_pred CCeEEEEecCCCCccccHHHH
Q 038192 50 NSAVIICGETGCGKTTQVPQF 70 (764)
Q Consensus 50 ~~vviI~GeTGSGKTTqvPq~ 70 (764)
...+++.|..||||||+.-..
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~L 24 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNL 24 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHH
Confidence 356899999999999987543
No 240
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=80.49 E-value=0.47 Score=44.45 Aligned_cols=18 Identities=22% Similarity=0.215 Sum_probs=15.2
Q ss_pred eEEEEecCCCCccccHHH
Q 038192 52 AVIICGETGCGKTTQVPQ 69 (764)
Q Consensus 52 vviI~GeTGSGKTTqvPq 69 (764)
.++|+|..||||||+.-.
T Consensus 2 ~I~l~G~~GsGKsT~a~~ 19 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSL 19 (168)
T ss_dssp EEEEESCTTSCHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHH
Confidence 478999999999997643
No 241
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=80.42 E-value=0.72 Score=47.68 Aligned_cols=21 Identities=24% Similarity=0.420 Sum_probs=17.2
Q ss_pred CCeEEEEecCCCCccccHHHH
Q 038192 50 NSAVIICGETGCGKTTQVPQF 70 (764)
Q Consensus 50 ~~vviI~GeTGSGKTTqvPq~ 70 (764)
...+++.|++||||||..=.+
T Consensus 54 ~~~vll~Gp~GtGKT~la~~l 74 (297)
T 3b9p_A 54 AKGLLLFGPPGNGKTLLARAV 74 (297)
T ss_dssp CSEEEEESSSSSCHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHH
Confidence 467999999999999876543
No 242
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=80.36 E-value=0.47 Score=48.06 Aligned_cols=21 Identities=33% Similarity=0.426 Sum_probs=17.4
Q ss_pred CeEEEEecCCCCccccHHHHH
Q 038192 51 SAVIICGETGCGKTTQVPQFL 71 (764)
Q Consensus 51 ~vviI~GeTGSGKTTqvPq~L 71 (764)
-.++|+|+.||||||+.-.+.
T Consensus 30 ~~I~l~G~~GsGKsT~a~~L~ 50 (243)
T 3tlx_A 30 GRYIFLGAPGSGKGTQSLNLK 50 (243)
T ss_dssp EEEEEECCTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 468999999999999876543
No 243
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=80.35 E-value=0.48 Score=46.05 Aligned_cols=19 Identities=37% Similarity=0.571 Sum_probs=15.9
Q ss_pred CeEEEEecCCCCccccHHH
Q 038192 51 SAVIICGETGCGKTTQVPQ 69 (764)
Q Consensus 51 ~vviI~GeTGSGKTTqvPq 69 (764)
-+++|+|..||||||+.-.
T Consensus 21 ~~I~l~G~~GsGKST~a~~ 39 (201)
T 2cdn_A 21 MRVLLLGPPGAGKGTQAVK 39 (201)
T ss_dssp CEEEEECCTTSSHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHH
Confidence 3688999999999998644
No 244
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=80.31 E-value=0.51 Score=46.98 Aligned_cols=28 Identities=21% Similarity=0.262 Sum_probs=24.0
Q ss_pred HHcCCeEEEEecCCCCccccHHHHHHHh
Q 038192 47 VNDNSAVIICGETGCGKTTQVPQFLFEA 74 (764)
Q Consensus 47 l~~~~vviI~GeTGSGKTTqvPq~Lle~ 74 (764)
+..+.+++|.|++||||||.+-++....
T Consensus 21 i~~G~~~~i~G~~GsGKTtl~~~l~~~~ 48 (243)
T 1n0w_A 21 IETGSITEMFGEFRTGKTQICHTLAVTC 48 (243)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHHHHT
T ss_pred CcCCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 4567899999999999999998887753
No 245
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=80.30 E-value=0.46 Score=49.37 Aligned_cols=36 Identities=19% Similarity=0.291 Sum_probs=28.2
Q ss_pred HHHHHHHHHcCCeEEEEecCCCCccccHHHHHHHhc
Q 038192 40 EQEIMEAVNDNSAVIICGETGCGKTTQVPQFLFEAG 75 (764)
Q Consensus 40 ~~~Il~~l~~~~vviI~GeTGSGKTTqvPq~Lle~~ 75 (764)
=+.+.-.+..+.+++|.|++||||||.+-++.....
T Consensus 25 Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~ 60 (296)
T 1cr0_A 25 INDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWG 60 (296)
T ss_dssp HHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred HHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 344555567789999999999999999888766543
No 246
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=80.28 E-value=0.48 Score=45.41 Aligned_cols=22 Identities=32% Similarity=0.460 Sum_probs=18.0
Q ss_pred cCCeEEEEecCCCCccccHHHH
Q 038192 49 DNSAVIICGETGCGKTTQVPQF 70 (764)
Q Consensus 49 ~~~vviI~GeTGSGKTTqvPq~ 70 (764)
.+.++++.|..||||||+.-..
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L 33 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRL 33 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHH
Confidence 3567899999999999987553
No 247
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=80.19 E-value=0.55 Score=45.71 Aligned_cols=22 Identities=23% Similarity=0.406 Sum_probs=18.1
Q ss_pred HcCCeEEEEecCCCCccccHHH
Q 038192 48 NDNSAVIICGETGCGKTTQVPQ 69 (764)
Q Consensus 48 ~~~~vviI~GeTGSGKTTqvPq 69 (764)
..+.+++|.|+.||||||..-.
T Consensus 23 ~~g~~i~l~G~sGsGKSTl~~~ 44 (200)
T 3uie_A 23 QKGCVIWVTGLSGSGKSTLACA 44 (200)
T ss_dssp SCCEEEEEECSTTSSHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHH
Confidence 4567899999999999987543
No 248
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=80.18 E-value=0.53 Score=43.97 Aligned_cols=19 Identities=26% Similarity=0.539 Sum_probs=15.9
Q ss_pred CeEEEEecCCCCccccHHH
Q 038192 51 SAVIICGETGCGKTTQVPQ 69 (764)
Q Consensus 51 ~vviI~GeTGSGKTTqvPq 69 (764)
.+.+|.|++||||||.+=-
T Consensus 24 g~~~I~G~NGsGKStil~A 42 (149)
T 1f2t_A 24 GINLIIGQNGSGKSSLLDA 42 (149)
T ss_dssp EEEEEECCTTSSHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHH
Confidence 4789999999999987543
No 249
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=80.17 E-value=0.51 Score=46.06 Aligned_cols=21 Identities=33% Similarity=0.518 Sum_probs=17.2
Q ss_pred CCeEEEEecCCCCccccHHHH
Q 038192 50 NSAVIICGETGCGKTTQVPQF 70 (764)
Q Consensus 50 ~~vviI~GeTGSGKTTqvPq~ 70 (764)
++++.|.|++||||||.+-..
T Consensus 1 G~~i~i~G~nG~GKTTll~~l 21 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKA 21 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHH
T ss_pred CCEEEEECCCCChHHHHHHHH
Confidence 357889999999999986553
No 250
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=80.17 E-value=0.47 Score=50.14 Aligned_cols=19 Identities=32% Similarity=0.496 Sum_probs=15.6
Q ss_pred CeEEEEecCCCCccccHHH
Q 038192 51 SAVIICGETGCGKTTQVPQ 69 (764)
Q Consensus 51 ~vviI~GeTGSGKTTqvPq 69 (764)
.+++|+|+|||||||..-.
T Consensus 11 ~~i~i~GptgsGKt~la~~ 29 (316)
T 3foz_A 11 KAIFLMGPTASGKTALAIE 29 (316)
T ss_dssp EEEEEECCTTSCHHHHHHH
T ss_pred cEEEEECCCccCHHHHHHH
Confidence 4789999999999976543
No 251
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=80.04 E-value=0.43 Score=46.92 Aligned_cols=23 Identities=17% Similarity=0.274 Sum_probs=19.0
Q ss_pred HHcCCeEEEEecCCCCccccHHH
Q 038192 47 VNDNSAVIICGETGCGKTTQVPQ 69 (764)
Q Consensus 47 l~~~~vviI~GeTGSGKTTqvPq 69 (764)
+..+.+++|.|..||||||+.-.
T Consensus 22 ~~~~~~i~~~G~~GsGKsT~~~~ 44 (211)
T 1m7g_A 22 NQRGLTIWLTGLSASGKSTLAVE 44 (211)
T ss_dssp TSSCEEEEEECSTTSSHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHH
Confidence 45667899999999999998654
No 252
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=79.95 E-value=0.5 Score=46.44 Aligned_cols=18 Identities=33% Similarity=0.564 Sum_probs=15.5
Q ss_pred EEEEecCCCCccccHHHH
Q 038192 53 VIICGETGCGKTTQVPQF 70 (764)
Q Consensus 53 viI~GeTGSGKTTqvPq~ 70 (764)
++|+|..||||||+.-.+
T Consensus 3 I~l~G~~GsGKsT~a~~L 20 (216)
T 3dl0_A 3 LVLMGLPGAGKGTQGERI 20 (216)
T ss_dssp EEEECSTTSSHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHH
Confidence 788999999999987654
No 253
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=79.88 E-value=0.44 Score=49.90 Aligned_cols=22 Identities=27% Similarity=0.480 Sum_probs=18.5
Q ss_pred HcCCeEEEEecCCCCccccHHH
Q 038192 48 NDNSAVIICGETGCGKTTQVPQ 69 (764)
Q Consensus 48 ~~~~vviI~GeTGSGKTTqvPq 69 (764)
..+.++.|.|+.||||||.+=.
T Consensus 62 ~~Ge~~~i~G~NGsGKSTLlk~ 83 (290)
T 2bbs_A 62 ERGQLLAVAGSTGAGKTSLLMM 83 (290)
T ss_dssp CTTCEEEEEESTTSSHHHHHHH
T ss_pred cCCCEEEEECCCCCcHHHHHHH
Confidence 4578899999999999997653
No 254
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=79.86 E-value=0.86 Score=47.04 Aligned_cols=21 Identities=29% Similarity=0.547 Sum_probs=16.4
Q ss_pred CCeEEEEecCCCCccccHHHH
Q 038192 50 NSAVIICGETGCGKTTQVPQF 70 (764)
Q Consensus 50 ~~vviI~GeTGSGKTTqvPq~ 70 (764)
...+++.|++|||||+..=.+
T Consensus 50 ~~~vll~G~~GtGKT~la~~l 70 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIARRL 70 (310)
T ss_dssp CCCEEEECCTTSSHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHH
Confidence 456899999999999765433
No 255
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=79.86 E-value=0.49 Score=46.86 Aligned_cols=20 Identities=35% Similarity=0.461 Sum_probs=16.7
Q ss_pred CeEEEEecCCCCccccHHHH
Q 038192 51 SAVIICGETGCGKTTQVPQF 70 (764)
Q Consensus 51 ~vviI~GeTGSGKTTqvPq~ 70 (764)
..++|.|..||||||+.-..
T Consensus 6 ~~I~l~G~~GsGKsT~~~~L 25 (222)
T 1zak_A 6 LKVMISGAPASGKGTQCELI 25 (222)
T ss_dssp CCEEEEESTTSSHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHH
Confidence 46889999999999987553
No 256
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=79.81 E-value=0.68 Score=45.12 Aligned_cols=21 Identities=29% Similarity=0.683 Sum_probs=16.9
Q ss_pred CeEEEEecCCCCccccHHHHH
Q 038192 51 SAVIICGETGCGKTTQVPQFL 71 (764)
Q Consensus 51 ~vviI~GeTGSGKTTqvPq~L 71 (764)
+.+||+|+.|+||||.+=..+
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~ 22 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLF 22 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 458999999999999775443
No 257
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=79.72 E-value=0.95 Score=48.39 Aligned_cols=21 Identities=29% Similarity=0.286 Sum_probs=17.3
Q ss_pred CCeEEEEecCCCCccccHHHH
Q 038192 50 NSAVIICGETGCGKTTQVPQF 70 (764)
Q Consensus 50 ~~vviI~GeTGSGKTTqvPq~ 70 (764)
...++|.|++|+||||.+=.+
T Consensus 45 ~~~vll~G~~G~GKT~la~~l 65 (384)
T 2qby_B 45 KFSNLFLGLTGTGKTFVSKYI 65 (384)
T ss_dssp CCEEEEEECTTSSHHHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHHHH
Confidence 457999999999999976444
No 258
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=79.71 E-value=0.51 Score=47.44 Aligned_cols=22 Identities=27% Similarity=0.413 Sum_probs=18.6
Q ss_pred cCCeEEEEecCCCCccccHHHH
Q 038192 49 DNSAVIICGETGCGKTTQVPQF 70 (764)
Q Consensus 49 ~~~vviI~GeTGSGKTTqvPq~ 70 (764)
.+..++|.|..|||||||.-..
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l 46 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEV 46 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHH
Confidence 4568899999999999997654
No 259
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=79.65 E-value=0.56 Score=48.34 Aligned_cols=28 Identities=14% Similarity=0.183 Sum_probs=24.1
Q ss_pred HHHcCCeEEEEecCCCCccccHHHHHHH
Q 038192 46 AVNDNSAVIICGETGCGKTTQVPQFLFE 73 (764)
Q Consensus 46 ~l~~~~vviI~GeTGSGKTTqvPq~Lle 73 (764)
-+..+.+++|.|++||||||..-+++..
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~ 53 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQ 53 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 3567899999999999999998888763
No 260
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=79.59 E-value=0.45 Score=46.89 Aligned_cols=20 Identities=30% Similarity=0.429 Sum_probs=16.5
Q ss_pred CCeEEEEecCCCCccccHHH
Q 038192 50 NSAVIICGETGCGKTTQVPQ 69 (764)
Q Consensus 50 ~~vviI~GeTGSGKTTqvPq 69 (764)
+.+++|+|..||||||+.-.
T Consensus 4 ~~~I~i~G~~GSGKST~~~~ 23 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANA 23 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHH
Confidence 34788999999999997643
No 261
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=79.41 E-value=0.46 Score=51.29 Aligned_cols=23 Identities=35% Similarity=0.677 Sum_probs=19.1
Q ss_pred HHcCCeEEEEecCCCCccccHHH
Q 038192 47 VNDNSAVIICGETGCGKTTQVPQ 69 (764)
Q Consensus 47 l~~~~vviI~GeTGSGKTTqvPq 69 (764)
+..+.++.|.|+.||||||.+=.
T Consensus 27 i~~Ge~~~llGpsGsGKSTLLr~ 49 (359)
T 3fvq_A 27 LDPGEILFIIGASGCGKTTLLRC 49 (359)
T ss_dssp ECTTCEEEEEESTTSSHHHHHHH
T ss_pred EcCCCEEEEECCCCchHHHHHHH
Confidence 35678999999999999997643
No 262
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=79.40 E-value=0.71 Score=45.58 Aligned_cols=21 Identities=29% Similarity=0.613 Sum_probs=17.1
Q ss_pred CCeEEEEecCCCCccccHHHH
Q 038192 50 NSAVIICGETGCGKTTQVPQF 70 (764)
Q Consensus 50 ~~vviI~GeTGSGKTTqvPq~ 70 (764)
+..++|+|+|||||||..-.+
T Consensus 34 g~~ilI~GpsGsGKStLA~~L 54 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALEL 54 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHH
Confidence 456899999999999876554
No 263
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=79.18 E-value=0.53 Score=46.33 Aligned_cols=18 Identities=33% Similarity=0.455 Sum_probs=15.5
Q ss_pred EEEEecCCCCccccHHHH
Q 038192 53 VIICGETGCGKTTQVPQF 70 (764)
Q Consensus 53 viI~GeTGSGKTTqvPq~ 70 (764)
++|.|..|||||||.-..
T Consensus 3 I~l~G~~GsGKsT~a~~L 20 (214)
T 1e4v_A 3 IILLGAPVAGKGTQAQFI 20 (214)
T ss_dssp EEEEESTTSSHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHH
Confidence 789999999999987554
No 264
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=79.11 E-value=0.55 Score=44.78 Aligned_cols=18 Identities=28% Similarity=0.451 Sum_probs=15.2
Q ss_pred CeEEEEecCCCCccccHH
Q 038192 51 SAVIICGETGCGKTTQVP 68 (764)
Q Consensus 51 ~vviI~GeTGSGKTTqvP 68 (764)
.+++|+|..||||||.--
T Consensus 3 ~~I~l~G~~GsGKsT~a~ 20 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGR 20 (184)
T ss_dssp CSEEEECSTTSSHHHHHH
T ss_pred CeEEEECCCCCCHHHHHH
Confidence 468999999999998653
No 265
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=79.09 E-value=0.44 Score=48.37 Aligned_cols=21 Identities=24% Similarity=0.428 Sum_probs=17.8
Q ss_pred HcCCeEEEEecCCCCccccHHH
Q 038192 48 NDNSAVIICGETGCGKTTQVPQ 69 (764)
Q Consensus 48 ~~~~vviI~GeTGSGKTTqvPq 69 (764)
.. .++.|.|+.||||||.+=.
T Consensus 23 ~~-e~~~liG~nGsGKSTLl~~ 43 (240)
T 2onk_A 23 GR-DYCVLLGPTGAGKSVFLEL 43 (240)
T ss_dssp CS-SEEEEECCTTSSHHHHHHH
T ss_pred CC-EEEEEECCCCCCHHHHHHH
Confidence 45 7889999999999998754
No 266
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=79.04 E-value=0.77 Score=44.19 Aligned_cols=23 Identities=22% Similarity=0.286 Sum_probs=19.1
Q ss_pred CCeEEEEecCCCCccccHHHHHH
Q 038192 50 NSAVIICGETGCGKTTQVPQFLF 72 (764)
Q Consensus 50 ~~vviI~GeTGSGKTTqvPq~Ll 72 (764)
-.+++|+|..||||||.+-..+-
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~ 28 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIP 28 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHH
Confidence 36789999999999998877653
No 267
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=79.02 E-value=2.7 Score=44.75 Aligned_cols=21 Identities=24% Similarity=0.406 Sum_probs=17.7
Q ss_pred eEEEEecCCCCccccHHHHHH
Q 038192 52 AVIICGETGCGKTTQVPQFLF 72 (764)
Q Consensus 52 vviI~GeTGSGKTTqvPq~Ll 72 (764)
.++|.|++|+||||.+=.+.-
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~ 66 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWE 66 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 799999999999998855443
No 268
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=79.02 E-value=1.1 Score=46.52 Aligned_cols=21 Identities=29% Similarity=0.574 Sum_probs=17.6
Q ss_pred CeEEEEecCCCCccccHHHHH
Q 038192 51 SAVIICGETGCGKTTQVPQFL 71 (764)
Q Consensus 51 ~vviI~GeTGSGKTTqvPq~L 71 (764)
.+++++|+.||||||..-...
T Consensus 34 ~livl~G~sGsGKSTla~~L~ 54 (287)
T 1gvn_B 34 TAFLLGGQPGSGKTSLRSAIF 54 (287)
T ss_dssp EEEEEECCTTSCTHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 478999999999999876544
No 269
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=78.96 E-value=0.79 Score=43.98 Aligned_cols=22 Identities=23% Similarity=0.323 Sum_probs=18.4
Q ss_pred CeEEEEecCCCCccccHHHHHH
Q 038192 51 SAVIICGETGCGKTTQVPQFLF 72 (764)
Q Consensus 51 ~vviI~GeTGSGKTTqvPq~Ll 72 (764)
.++.|+|..||||||.+...+-
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~ 26 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVA 26 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 5789999999999998776553
No 270
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=78.74 E-value=0.83 Score=46.86 Aligned_cols=22 Identities=23% Similarity=0.430 Sum_probs=17.4
Q ss_pred cCCeEEEEecCCCCccccHHHH
Q 038192 49 DNSAVIICGETGCGKTTQVPQF 70 (764)
Q Consensus 49 ~~~vviI~GeTGSGKTTqvPq~ 70 (764)
....+++.|++||||||.+=.+
T Consensus 50 ~~~~~ll~G~~GtGKT~la~~l 71 (285)
T 3h4m_A 50 PPKGILLYGPPGTGKTLLAKAV 71 (285)
T ss_dssp CCSEEEEESSSSSSHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHH
Confidence 4567999999999999766433
No 271
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=78.61 E-value=0.6 Score=45.06 Aligned_cols=22 Identities=32% Similarity=0.437 Sum_probs=16.9
Q ss_pred CeEEEEecCCCCccccHHHHHHH
Q 038192 51 SAVIICGETGCGKTTQVPQFLFE 73 (764)
Q Consensus 51 ~vviI~GeTGSGKTTqvPq~Lle 73 (764)
.++.|+|.+||||||..- .|.+
T Consensus 9 ~~I~i~G~~GsGKST~~~-~La~ 30 (203)
T 1uf9_A 9 IIIGITGNIGSGKSTVAA-LLRS 30 (203)
T ss_dssp EEEEEEECTTSCHHHHHH-HHHH
T ss_pred eEEEEECCCCCCHHHHHH-HHHH
Confidence 468899999999999654 3444
No 272
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=78.52 E-value=0.61 Score=45.29 Aligned_cols=17 Identities=35% Similarity=0.735 Sum_probs=14.7
Q ss_pred eEEEEecCCCCccccHH
Q 038192 52 AVIICGETGCGKTTQVP 68 (764)
Q Consensus 52 vviI~GeTGSGKTTqvP 68 (764)
++.|+|..||||||..=
T Consensus 3 ~i~i~G~~GsGKSTl~~ 19 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQ 19 (204)
T ss_dssp EEEEEECTTSSHHHHHH
T ss_pred EEEEECCCCcCHHHHHH
Confidence 58899999999999753
No 273
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=78.49 E-value=0.53 Score=47.53 Aligned_cols=23 Identities=22% Similarity=0.228 Sum_probs=18.3
Q ss_pred HHcCCeEEEEecCCCCccccHHH
Q 038192 47 VNDNSAVIICGETGCGKTTQVPQ 69 (764)
Q Consensus 47 l~~~~vviI~GeTGSGKTTqvPq 69 (764)
+..+.++.|.|+.||||||..=.
T Consensus 22 i~~g~iigI~G~~GsGKSTl~k~ 44 (245)
T 2jeo_A 22 SMRPFLIGVSGGTASGKSTVCEK 44 (245)
T ss_dssp -CCSEEEEEECSTTSSHHHHHHH
T ss_pred CCCCEEEEEECCCCCCHHHHHHH
Confidence 45667899999999999997643
No 274
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=78.49 E-value=0.59 Score=46.51 Aligned_cols=19 Identities=37% Similarity=0.532 Sum_probs=16.0
Q ss_pred eEEEEecCCCCccccHHHH
Q 038192 52 AVIICGETGCGKTTQVPQF 70 (764)
Q Consensus 52 vviI~GeTGSGKTTqvPq~ 70 (764)
.++|.|..|||||||.-..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L 20 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLV 20 (223)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 4789999999999987543
No 275
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=78.37 E-value=0.49 Score=48.78 Aligned_cols=22 Identities=50% Similarity=0.675 Sum_probs=18.6
Q ss_pred HHcCCeEEEEecCCCCccccHHH
Q 038192 47 VNDNSAVIICGETGCGKTTQVPQ 69 (764)
Q Consensus 47 l~~~~vviI~GeTGSGKTTqvPq 69 (764)
+. ++++.|.|+.||||||.+=.
T Consensus 28 i~-Ge~~~i~G~NGsGKSTLlk~ 49 (263)
T 2pjz_A 28 VN-GEKVIILGPNGSGKTTLLRA 49 (263)
T ss_dssp EC-SSEEEEECCTTSSHHHHHHH
T ss_pred EC-CEEEEEECCCCCCHHHHHHH
Confidence 45 78899999999999997653
No 276
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=78.37 E-value=0.5 Score=51.40 Aligned_cols=22 Identities=32% Similarity=0.720 Sum_probs=18.8
Q ss_pred HcCCeEEEEecCCCCccccHHH
Q 038192 48 NDNSAVIICGETGCGKTTQVPQ 69 (764)
Q Consensus 48 ~~~~vviI~GeTGSGKTTqvPq 69 (764)
..+.++.|.|++||||||.+=.
T Consensus 27 ~~Ge~~~llGpsGsGKSTLLr~ 48 (381)
T 3rlf_A 27 HEGEFVVFVGPSGCGKSTLLRM 48 (381)
T ss_dssp CTTCEEEEECCTTSSHHHHHHH
T ss_pred CCCCEEEEEcCCCchHHHHHHH
Confidence 5678999999999999997653
No 277
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=78.31 E-value=0.62 Score=49.87 Aligned_cols=17 Identities=35% Similarity=0.491 Sum_probs=14.6
Q ss_pred CeEEEEecCCCCccccH
Q 038192 51 SAVIICGETGCGKTTQV 67 (764)
Q Consensus 51 ~vviI~GeTGSGKTTqv 67 (764)
.+++|+|+|||||||..
T Consensus 8 ~lI~I~GptgSGKTtla 24 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELS 24 (340)
T ss_dssp EEEEEECSTTSSHHHHH
T ss_pred ceEEEECCCcCcHHHHH
Confidence 47899999999999743
No 278
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=78.04 E-value=2.2 Score=47.02 Aligned_cols=56 Identities=16% Similarity=0.173 Sum_probs=35.1
Q ss_pred CCeEEEEecCCCCccccHHHHHHHhccCCCCCCCCCceEEEecccHHHHHHHHHHHHHHhC
Q 038192 50 NSAVIICGETGCGKTTQVPQFLFEAGFGSNRCSSRSGRIGVTQPRRVAVLATAKRVAFELG 110 (764)
Q Consensus 50 ~~vviI~GeTGSGKTTqvPq~Lle~~~~~~~~~~~~~~Ii~tQPRRiaAisvA~RVa~E~g 110 (764)
..++.+.|.+||||||.+-....-...... ...++-.-++|.+|....+..+...|
T Consensus 98 ~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~-----~Vllvd~D~~r~aa~~qL~~~~~~~g 153 (425)
T 2ffh_A 98 RNLWFLVGLQGSGKTTTAAKLALYYKGKGR-----RPLLVAADTQRPAAREQLRLLGEKVG 153 (425)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHTTTC-----CEEEEECCSSCHHHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCC-----eEEEeeccccCchhHHHHHHhcccCC
Confidence 347888999999999986654432221111 25677778899888753333444433
No 279
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=77.84 E-value=0.52 Score=50.79 Aligned_cols=23 Identities=30% Similarity=0.475 Sum_probs=19.3
Q ss_pred HHcCCeEEEEecCCCCccccHHH
Q 038192 47 VNDNSAVIICGETGCGKTTQVPQ 69 (764)
Q Consensus 47 l~~~~vviI~GeTGSGKTTqvPq 69 (764)
+..+.++.|.|++||||||.+=.
T Consensus 38 i~~Ge~~~llGpnGsGKSTLLr~ 60 (355)
T 1z47_A 38 IREGEMVGLLGPSGSGKTTILRL 60 (355)
T ss_dssp EETTCEEEEECSTTSSHHHHHHH
T ss_pred ECCCCEEEEECCCCCcHHHHHHH
Confidence 35678999999999999997653
No 280
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=77.60 E-value=0.65 Score=45.23 Aligned_cols=18 Identities=39% Similarity=0.423 Sum_probs=15.3
Q ss_pred eEEEEecCCCCccccHHH
Q 038192 52 AVIICGETGCGKTTQVPQ 69 (764)
Q Consensus 52 vviI~GeTGSGKTTqvPq 69 (764)
++.|.|+.||||||..-.
T Consensus 4 ~i~l~G~~GsGKST~~~~ 21 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANL 21 (206)
T ss_dssp EEEEECSTTSCHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 578999999999997643
No 281
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=77.47 E-value=0.68 Score=46.61 Aligned_cols=22 Identities=27% Similarity=0.365 Sum_probs=15.7
Q ss_pred HcCCeEEEEecCCCCccccHHH
Q 038192 48 NDNSAVIICGETGCGKTTQVPQ 69 (764)
Q Consensus 48 ~~~~vviI~GeTGSGKTTqvPq 69 (764)
..+..+++.|..|||||||+-.
T Consensus 23 ~~g~~I~~eG~~GsGKsT~~~~ 44 (227)
T 3v9p_A 23 ARGKFITFEGIDGAGKTTHLQW 44 (227)
T ss_dssp CCCCEEEEECCC---CHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHH
Confidence 4567899999999999999654
No 282
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=77.43 E-value=0.93 Score=47.34 Aligned_cols=17 Identities=24% Similarity=0.427 Sum_probs=14.8
Q ss_pred CeEEEEecCCCCccccH
Q 038192 51 SAVIICGETGCGKTTQV 67 (764)
Q Consensus 51 ~vviI~GeTGSGKTTqv 67 (764)
.++.|+|++||||||..
T Consensus 32 ~ii~I~G~sGsGKSTla 48 (290)
T 1odf_A 32 LFIFFSGPQGSGKSFTS 48 (290)
T ss_dssp EEEEEECCTTSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 47889999999999964
No 283
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=77.27 E-value=0.81 Score=45.54 Aligned_cols=20 Identities=35% Similarity=0.451 Sum_probs=17.3
Q ss_pred CCeEEEEecCCCCccccHHH
Q 038192 50 NSAVIICGETGCGKTTQVPQ 69 (764)
Q Consensus 50 ~~vviI~GeTGSGKTTqvPq 69 (764)
+..+++.|..|||||||+-.
T Consensus 3 g~~i~~eG~~gsGKsT~~~~ 22 (213)
T 4tmk_A 3 SKYIVIEGLEGAGKTTARNV 22 (213)
T ss_dssp CCEEEEEECTTSCHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHH
Confidence 56789999999999999743
No 284
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=77.27 E-value=0.56 Score=50.61 Aligned_cols=22 Identities=41% Similarity=0.708 Sum_probs=18.8
Q ss_pred HcCCeEEEEecCCCCccccHHH
Q 038192 48 NDNSAVIICGETGCGKTTQVPQ 69 (764)
Q Consensus 48 ~~~~vviI~GeTGSGKTTqvPq 69 (764)
..+.++.|.|+.||||||.+=.
T Consensus 27 ~~Ge~~~llGpnGsGKSTLLr~ 48 (359)
T 2yyz_A 27 KDGEFVALLGPSGCGKTTTLLM 48 (359)
T ss_dssp CTTCEEEEECSTTSSHHHHHHH
T ss_pred cCCCEEEEEcCCCchHHHHHHH
Confidence 4678999999999999997653
No 285
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=77.26 E-value=0.7 Score=45.66 Aligned_cols=19 Identities=37% Similarity=0.548 Sum_probs=16.0
Q ss_pred CeEEEEecCCCCccccHHH
Q 038192 51 SAVIICGETGCGKTTQVPQ 69 (764)
Q Consensus 51 ~vviI~GeTGSGKTTqvPq 69 (764)
..+++.|..|||||||.-.
T Consensus 6 ~~I~l~G~~GsGKsT~a~~ 24 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEF 24 (217)
T ss_dssp CEEEEEECTTSSHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHH
Confidence 4588899999999998754
No 286
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=77.25 E-value=0.57 Score=50.66 Aligned_cols=22 Identities=27% Similarity=0.472 Sum_probs=18.7
Q ss_pred HcCCeEEEEecCCCCccccHHH
Q 038192 48 NDNSAVIICGETGCGKTTQVPQ 69 (764)
Q Consensus 48 ~~~~vviI~GeTGSGKTTqvPq 69 (764)
..+.++.|.|+.||||||.+=.
T Consensus 27 ~~Ge~~~llGpnGsGKSTLLr~ 48 (362)
T 2it1_A 27 KDGEFMALLGPSGSGKSTLLYT 48 (362)
T ss_dssp CTTCEEEEECCTTSSHHHHHHH
T ss_pred CCCCEEEEECCCCchHHHHHHH
Confidence 4678999999999999997643
No 287
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=77.24 E-value=0.58 Score=51.10 Aligned_cols=23 Identities=30% Similarity=0.492 Sum_probs=19.5
Q ss_pred HHcCCeEEEEecCCCCccccHHH
Q 038192 47 VNDNSAVIICGETGCGKTTQVPQ 69 (764)
Q Consensus 47 l~~~~vviI~GeTGSGKTTqvPq 69 (764)
|..+.++.|.|++||||||.+-.
T Consensus 44 i~~Ge~~~llGpsGsGKSTLLr~ 66 (390)
T 3gd7_A 44 ISPGQRVGLLGRTGSGKSTLLSA 66 (390)
T ss_dssp ECTTCEEEEEESTTSSHHHHHHH
T ss_pred EcCCCEEEEECCCCChHHHHHHH
Confidence 45688999999999999998743
No 288
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=76.98 E-value=0.71 Score=49.06 Aligned_cols=16 Identities=38% Similarity=0.607 Sum_probs=14.0
Q ss_pred CeEEEEecCCCCcccc
Q 038192 51 SAVIICGETGCGKTTQ 66 (764)
Q Consensus 51 ~vviI~GeTGSGKTTq 66 (764)
.+++|+|+|||||||.
T Consensus 6 ~~i~i~GptGsGKTtl 21 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDL 21 (323)
T ss_dssp EEEEEECCTTSCHHHH
T ss_pred cEEEEECCCCCCHHHH
Confidence 4789999999999964
No 289
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=76.94 E-value=1.1 Score=45.24 Aligned_cols=21 Identities=29% Similarity=0.483 Sum_probs=16.3
Q ss_pred CCeEEEEecCCCCccccHHHH
Q 038192 50 NSAVIICGETGCGKTTQVPQF 70 (764)
Q Consensus 50 ~~vviI~GeTGSGKTTqvPq~ 70 (764)
..-+++.|++||||||..=.+
T Consensus 45 ~~~vll~G~~GtGKT~la~~l 65 (257)
T 1lv7_A 45 PKGVLMVGPPGTGKTLLAKAI 65 (257)
T ss_dssp CCEEEEECCTTSCHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHH
Confidence 345899999999999865433
No 290
>2v26_A Myosin VI; calmodulin-binding, nucleotide-binding, membrane, vanadate, transport, PRE- powerstroke, transition state, protein transport; HET: ADP; 1.75A {Sus scrofa} PDB: 2bki_A 2bkh_A 3l9i_A 2x51_A 2vb6_A* 2vas_A*
Probab=76.93 E-value=1.3 Score=52.60 Aligned_cols=44 Identities=25% Similarity=0.520 Sum_probs=31.5
Q ss_pred hcCCC--chhhHHHHHHHH---HcCCeEEEEecCCCCccc---cHHHHHHHh
Q 038192 31 RKDLP--IVMMEQEIMEAV---NDNSAVIICGETGCGKTT---QVPQFLFEA 74 (764)
Q Consensus 31 R~~LP--i~~~~~~Il~~l---~~~~vviI~GeTGSGKTT---qvPq~Lle~ 74 (764)
+..+| ||..-+.....+ ..||.+||+||.|+|||. .|-|||...
T Consensus 116 ~~~~pPHifaiA~~Ay~~m~~~~~nQsIiiSGESGAGKTe~tK~i~~yla~~ 167 (784)
T 2v26_A 116 LGTMPPHVFAIADKAFRDMKVLKLSQSIIVSGESGAGKTENTKFVLRYLTES 167 (784)
T ss_dssp TTSSCSCHHHHHHHHHHHHHHHTCCEEEEEECSTTSSHHHHHHHHHHHHHHH
T ss_pred cccCCchHHHHHHHHHHHHHhcCCCcEEEEcCCCCCCceehHHHHHHHHHhh
Confidence 44677 555555554444 458999999999999996 477787753
No 291
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=76.87 E-value=0.9 Score=47.94 Aligned_cols=30 Identities=17% Similarity=0.372 Sum_probs=22.7
Q ss_pred HHHHHHHHHcC--CeEEEEecCCCCccccHHH
Q 038192 40 EQEIMEAVNDN--SAVIICGETGCGKTTQVPQ 69 (764)
Q Consensus 40 ~~~Il~~l~~~--~vviI~GeTGSGKTTqvPq 69 (764)
.+.+..++..+ ..+++.|++|+||||.+=.
T Consensus 46 ~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~ 77 (353)
T 1sxj_D 46 VTVLKKTLKSANLPHMLFYGPPGTGKTSTILA 77 (353)
T ss_dssp HHHHHHHTTCTTCCCEEEECSTTSSHHHHHHH
T ss_pred HHHHHHHHhcCCCCEEEEECCCCCCHHHHHHH
Confidence 45666777766 4589999999999986543
No 292
>3cpe_A Terminase, DNA packaging protein GP17; large terminase, alternative initiation, ATP-binding, DNA- binding, hydrolase, nuclease; HET: DNA; 2.80A {Bacteriophage T4} PDB: 3ezk_A*
Probab=76.82 E-value=5.3 Score=45.90 Aligned_cols=72 Identities=13% Similarity=0.146 Sum_probs=55.7
Q ss_pred CCchhhHHHHHHHHHcCCeEEEEecCCCCccccHHHHHHHhccCCCCCCCCCceEEEecccHHHHHHHHHHHHHHhC
Q 038192 34 LPIVMMEQEIMEAVNDNSAVIICGETGCGKTTQVPQFLFEAGFGSNRCSSRSGRIGVTQPRRVAVLATAKRVAFELG 110 (764)
Q Consensus 34 LPi~~~~~~Il~~l~~~~vviI~GeTGSGKTTqvPq~Lle~~~~~~~~~~~~~~Ii~tQPRRiaAisvA~RVa~E~g 110 (764)
+....++..|+..+..++.+++.++-|+|||+.+-.+++-.....+ ..+|+++.|++-.|..+..++.....
T Consensus 162 ~~l~p~Q~~i~~~l~~~r~~~i~~~Rq~GKS~~~a~~~l~~~~~~~-----~~~i~~va~t~~qA~~~~~~i~~~i~ 233 (592)
T 3cpe_A 162 VQLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCFNK-----DKAVGILAHKGSMSAEVLDRTKQAIE 233 (592)
T ss_dssp CCCCHHHHHHHHHHHHCSEEEEEECSSSCHHHHHHHHHHHHHHTSS-----SCEEEEEESSHHHHHHHHHHHHHHHT
T ss_pred CcCCHHHHHHHHhhccccEEEEEEcCccChHHHHHHHHHHHHHhCC-----CCeEEEEECCHHHHHHHHHHHHHHHH
Confidence 3457899999999877788999999999999987766654433322 14899999999999888877765543
No 293
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=76.81 E-value=0.74 Score=49.71 Aligned_cols=20 Identities=35% Similarity=0.549 Sum_probs=16.5
Q ss_pred CeEEEEecCCCCccccHHHH
Q 038192 51 SAVIICGETGCGKTTQVPQF 70 (764)
Q Consensus 51 ~vviI~GeTGSGKTTqvPq~ 70 (764)
.+.+|+|+||+||||.+=-+
T Consensus 26 gl~vi~G~NGaGKT~ileAI 45 (371)
T 3auy_A 26 GIVAIIGENGSGKSSIFEAV 45 (371)
T ss_dssp EEEEEEECTTSSHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHH
Confidence 57899999999999875443
No 294
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=76.78 E-value=0.95 Score=48.03 Aligned_cols=21 Identities=33% Similarity=0.487 Sum_probs=17.3
Q ss_pred CeEEEEecCCCCccccHHHHH
Q 038192 51 SAVIICGETGCGKTTQVPQFL 71 (764)
Q Consensus 51 ~vviI~GeTGSGKTTqvPq~L 71 (764)
+.+++.|++||||||.+=.+.
T Consensus 52 ~~~ll~Gp~G~GKTTLa~~ia 72 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAHIIA 72 (334)
T ss_dssp CCEEEESSTTSSHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHH
Confidence 678999999999999765443
No 295
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=76.74 E-value=0.79 Score=51.98 Aligned_cols=32 Identities=28% Similarity=0.513 Sum_probs=26.0
Q ss_pred HHHH-HHHcCCeEEEEecCCCCccccHHHHHHH
Q 038192 42 EIME-AVNDNSAVIICGETGCGKTTQVPQFLFE 73 (764)
Q Consensus 42 ~Il~-~l~~~~vviI~GeTGSGKTTqvPq~Lle 73 (764)
.|.- .|..+.++.|.|++||||||.+-++++.
T Consensus 30 ~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~ 62 (525)
T 1tf7_A 30 DISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYN 62 (525)
T ss_dssp HHTTSSEETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred HhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 3444 5667899999999999999999998654
No 296
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=76.57 E-value=0.74 Score=49.72 Aligned_cols=45 Identities=13% Similarity=0.073 Sum_probs=26.6
Q ss_pred CCCCHHHHHhhhcc---CC-CCceEEEEecCcccccCCCCCeEEEEeCCcc
Q 038192 444 AMLPAAAQLRVFED---VK-EGERLVVVSTNVAETSLTIPGIKYVVDTGRE 490 (764)
Q Consensus 444 s~l~~~eQ~~vf~~---~~-~g~rKVIlsTNIAEtSITIpdV~~VID~G~~ 490 (764)
++|.+..+..+++- .. .|. -||+.|--.+- +..-|-.+|++-|..
T Consensus 314 ~~LD~~~~~~~~~~l~~l~~~g~-tvi~itH~~~~-~~~~d~~~~l~~G~i 362 (365)
T 3qf7_A 314 SSLDTENKEKIASVLKELERLNK-VIVFITHDREF-SEAFDRKLRITGGVV 362 (365)
T ss_dssp TTSCHHHHHHHHHHHHGGGGSSS-EEEEEESCHHH-HTTCSCEEEEETTEE
T ss_pred ccCCHHHHHHHHHHHHHHHhCCC-EEEEEecchHH-HHhCCEEEEEECCEE
Confidence 68888888766542 22 344 45555543343 445566788887753
No 297
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=76.48 E-value=0.73 Score=46.07 Aligned_cols=20 Identities=35% Similarity=0.689 Sum_probs=16.5
Q ss_pred CeEEEEecCCCCccccHHHH
Q 038192 51 SAVIICGETGCGKTTQVPQF 70 (764)
Q Consensus 51 ~vviI~GeTGSGKTTqvPq~ 70 (764)
..+++.|.+|||||||.-..
T Consensus 17 ~~I~l~G~~GsGKsT~a~~L 36 (233)
T 1ak2_A 17 VRAVLLGPPGAGKGTQAPKL 36 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHH
Confidence 46899999999999987543
No 298
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=76.43 E-value=0.57 Score=49.55 Aligned_cols=22 Identities=18% Similarity=0.187 Sum_probs=18.1
Q ss_pred HHcCCeEEEEecCCCCccccHH
Q 038192 47 VNDNSAVIICGETGCGKTTQVP 68 (764)
Q Consensus 47 l~~~~vviI~GeTGSGKTTqvP 68 (764)
+..+.++.|.|++||||||.+=
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~~ 108 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTAR 108 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHHH
T ss_pred CCCCEEEEEECCCCchHHHHHH
Confidence 3456789999999999999754
No 299
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=76.39 E-value=1.2 Score=49.08 Aligned_cols=19 Identities=37% Similarity=0.679 Sum_probs=16.8
Q ss_pred eEEEEecCCCCccccHHHH
Q 038192 52 AVIICGETGCGKTTQVPQF 70 (764)
Q Consensus 52 vviI~GeTGSGKTTqvPq~ 70 (764)
++.|.|++||||||.+=..
T Consensus 71 ~valvG~nGaGKSTLln~L 89 (413)
T 1tq4_A 71 NVAVTGETGSGKSSFINTL 89 (413)
T ss_dssp EEEEEECTTSSHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHH
Confidence 8999999999999987653
No 300
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=76.32 E-value=1.4 Score=46.40 Aligned_cols=19 Identities=21% Similarity=0.506 Sum_probs=16.0
Q ss_pred CCeEEEEecCCCCccccHH
Q 038192 50 NSAVIICGETGCGKTTQVP 68 (764)
Q Consensus 50 ~~vviI~GeTGSGKTTqvP 68 (764)
+..+++.|+||+|||+..-
T Consensus 152 ~~~lll~G~~GtGKT~La~ 170 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLA 170 (308)
T ss_dssp CCEEEEECSTTSSHHHHHH
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 5789999999999997543
No 301
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=76.22 E-value=0.75 Score=45.75 Aligned_cols=21 Identities=29% Similarity=0.347 Sum_probs=17.8
Q ss_pred cCCeEEEEecCCCCccccHHH
Q 038192 49 DNSAVIICGETGCGKTTQVPQ 69 (764)
Q Consensus 49 ~~~vviI~GeTGSGKTTqvPq 69 (764)
.+..+++.|..|||||||+-.
T Consensus 5 ~g~~i~~eG~~gsGKsT~~~~ 25 (213)
T 4edh_A 5 TGLFVTLEGPEGAGKSTNRDY 25 (213)
T ss_dssp CCEEEEEECSTTSSHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHH
Confidence 356789999999999999854
No 302
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=76.17 E-value=1.4 Score=46.03 Aligned_cols=20 Identities=35% Similarity=0.679 Sum_probs=16.4
Q ss_pred cCCeEEEEecCCCCccccHH
Q 038192 49 DNSAVIICGETGCGKTTQVP 68 (764)
Q Consensus 49 ~~~vviI~GeTGSGKTTqvP 68 (764)
....+++.|++||||||..=
T Consensus 48 ~~~~vLL~Gp~GtGKT~la~ 67 (301)
T 3cf0_A 48 PSKGVLFYGPPGCGKTLLAK 67 (301)
T ss_dssp CCSEEEEECSSSSSHHHHHH
T ss_pred CCceEEEECCCCcCHHHHHH
Confidence 45679999999999997653
No 303
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=76.16 E-value=0.63 Score=50.48 Aligned_cols=23 Identities=35% Similarity=0.775 Sum_probs=19.0
Q ss_pred HHcCCeEEEEecCCCCccccHHH
Q 038192 47 VNDNSAVIICGETGCGKTTQVPQ 69 (764)
Q Consensus 47 l~~~~vviI~GeTGSGKTTqvPq 69 (764)
+..+.++.|.|+.||||||.+=.
T Consensus 34 i~~Ge~~~llGpnGsGKSTLLr~ 56 (372)
T 1v43_A 34 IKDGEFLVLLGPSGCGKTTTLRM 56 (372)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHH
T ss_pred ECCCCEEEEECCCCChHHHHHHH
Confidence 35678999999999999997643
No 304
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=76.16 E-value=0.62 Score=50.54 Aligned_cols=22 Identities=41% Similarity=0.774 Sum_probs=18.7
Q ss_pred HcCCeEEEEecCCCCccccHHH
Q 038192 48 NDNSAVIICGETGCGKTTQVPQ 69 (764)
Q Consensus 48 ~~~~vviI~GeTGSGKTTqvPq 69 (764)
..+.++.|.|+.||||||.+=.
T Consensus 27 ~~Ge~~~llGpnGsGKSTLLr~ 48 (372)
T 1g29_1 27 KDGEFMILLGPSGCGKTTTLRM 48 (372)
T ss_dssp ETTCEEEEECSTTSSHHHHHHH
T ss_pred cCCCEEEEECCCCcHHHHHHHH
Confidence 5678999999999999997643
No 305
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=76.04 E-value=1.7 Score=48.87 Aligned_cols=22 Identities=27% Similarity=0.534 Sum_probs=18.2
Q ss_pred CCeEEEEecCCCCccccHHHHH
Q 038192 50 NSAVIICGETGCGKTTQVPQFL 71 (764)
Q Consensus 50 ~~vviI~GeTGSGKTTqvPq~L 71 (764)
+.++.|.|++||||||.+-...
T Consensus 293 GeVI~LVGpNGSGKTTLl~~LA 314 (503)
T 2yhs_A 293 PFVILMVGVNGVGKTTTIGKLA 314 (503)
T ss_dssp TEEEEEECCTTSSHHHHHHHHH
T ss_pred CeEEEEECCCcccHHHHHHHHH
Confidence 4588999999999999876543
No 306
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=75.97 E-value=1.3 Score=44.47 Aligned_cols=21 Identities=29% Similarity=0.588 Sum_probs=16.5
Q ss_pred CCeEEEEecCCCCccccHHHH
Q 038192 50 NSAVIICGETGCGKTTQVPQF 70 (764)
Q Consensus 50 ~~vviI~GeTGSGKTTqvPq~ 70 (764)
...+++.|++||||||..=.+
T Consensus 39 ~~~vll~G~~GtGKT~la~~l 59 (262)
T 2qz4_A 39 PKGALLLGPPGCGKTLLAKAV 59 (262)
T ss_dssp CCEEEEESCTTSSHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHH
Confidence 356899999999999865443
No 307
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=75.81 E-value=0.59 Score=44.86 Aligned_cols=20 Identities=30% Similarity=0.481 Sum_probs=16.5
Q ss_pred CeEEEEecCCCCccccHHHH
Q 038192 51 SAVIICGETGCGKTTQVPQF 70 (764)
Q Consensus 51 ~vviI~GeTGSGKTTqvPq~ 70 (764)
+++.|.|++||||||.+-..
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L 22 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRM 22 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHH
Confidence 46889999999999986544
No 308
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=75.63 E-value=0.77 Score=43.45 Aligned_cols=16 Identities=31% Similarity=0.561 Sum_probs=13.9
Q ss_pred eEEEEecCCCCccccH
Q 038192 52 AVIICGETGCGKTTQV 67 (764)
Q Consensus 52 vviI~GeTGSGKTTqv 67 (764)
+++|.|..||||||.-
T Consensus 6 ~i~i~G~~GsGKsTla 21 (175)
T 1via_A 6 NIVFIGFMGSGKSTLA 21 (175)
T ss_dssp CEEEECCTTSCHHHHH
T ss_pred EEEEEcCCCCCHHHHH
Confidence 5889999999999854
No 309
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=75.61 E-value=0.88 Score=46.24 Aligned_cols=22 Identities=23% Similarity=0.335 Sum_probs=17.9
Q ss_pred HcCCeEEEEecCCCCccccHHH
Q 038192 48 NDNSAVIICGETGCGKTTQVPQ 69 (764)
Q Consensus 48 ~~~~vviI~GeTGSGKTTqvPq 69 (764)
..+.++.|.|++||||||..-.
T Consensus 25 ~~g~~I~I~G~~GsGKSTl~k~ 46 (252)
T 4e22_A 25 AIAPVITVDGPSGAGKGTLCKA 46 (252)
T ss_dssp TTSCEEEEECCTTSSHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHH
Confidence 3467899999999999987643
No 310
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=75.61 E-value=1.5 Score=47.44 Aligned_cols=41 Identities=24% Similarity=0.334 Sum_probs=29.0
Q ss_pred cCCeEEEEecCCCCccccHHHHHHHhccCCCCCCCCCceEEEecccHH
Q 038192 49 DNSAVIICGETGCGKTTQVPQFLFEAGFGSNRCSSRSGRIGVTQPRRV 96 (764)
Q Consensus 49 ~~~vviI~GeTGSGKTTqvPq~Lle~~~~~~~~~~~~~~Ii~tQPRRi 96 (764)
.|..++|.|+|||||||.+=..+.... ..+ .+|++.-|.+.
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~~~-~~~------~~~~~~D~~~~ 74 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLREY-MQG------SRVIIIDPERE 74 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHH-TTT------CCEEEEESSCC
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHHHH-HCC------CEEEEEeCCcC
Confidence 466789999999999998765554432 221 46777788754
No 311
>2o0j_A Terminase, DNA packaging protein GP17; nucleotide-binding fold, hydrolase; HET: DNA ADP; 1.80A {Enterobacteria phage T4} PDB: 2o0h_A* 2o0k_A*
Probab=75.55 E-value=5.9 Score=42.98 Aligned_cols=69 Identities=13% Similarity=0.143 Sum_probs=53.3
Q ss_pred CCchhhHHHHHHHHHcCCeEEEEecCCCCccccHHHHHHHhccCCCCCCCCCceEEEecccHHHHHHHHHHHHH
Q 038192 34 LPIVMMEQEIMEAVNDNSAVIICGETGCGKTTQVPQFLFEAGFGSNRCSSRSGRIGVTQPRRVAVLATAKRVAF 107 (764)
Q Consensus 34 LPi~~~~~~Il~~l~~~~vviI~GeTGSGKTTqvPq~Lle~~~~~~~~~~~~~~Ii~tQPRRiaAisvA~RVa~ 107 (764)
+....+|..|+..+...+.+++...-+.|||+.+--+++-...... ..+|+++.|++-.|..+.+++..
T Consensus 162 ~~L~p~Qk~il~~l~~~R~~vi~~sRq~GKT~l~a~~~l~~a~~~~-----g~~v~~vA~t~~qA~~vf~~i~~ 230 (385)
T 2o0j_A 162 VQLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCFNK-----DKAVGILAHKGSMSAEVLDRTKQ 230 (385)
T ss_dssp CCCCHHHHHHHHHHHHSSEEEEEECSSSCHHHHHHHHHHHHHHSSS-----SCEEEEEESSHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHhhccCcEEEEEEcCcCChhHHHHHHHHHHHHhCC-----CCeEEEEeCCHHHHHHHHHHHHH
Confidence 4568899999999877788999999999999987666654333322 25899999999988877766654
No 312
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=75.54 E-value=0.76 Score=46.95 Aligned_cols=20 Identities=30% Similarity=0.415 Sum_probs=16.5
Q ss_pred CCeEEEEecCCCCccccHHH
Q 038192 50 NSAVIICGETGCGKTTQVPQ 69 (764)
Q Consensus 50 ~~vviI~GeTGSGKTTqvPq 69 (764)
..+++++|..||||||+.-.
T Consensus 4 ~~lIvl~G~pGSGKSTla~~ 23 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKN 23 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHH
Confidence 34789999999999997544
No 313
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=75.42 E-value=1.1 Score=49.76 Aligned_cols=27 Identities=30% Similarity=0.469 Sum_probs=21.1
Q ss_pred HHHHHHHcCCe--EEEEecCCCCccccHH
Q 038192 42 EIMEAVNDNSA--VIICGETGCGKTTQVP 68 (764)
Q Consensus 42 ~Il~~l~~~~v--viI~GeTGSGKTTqvP 68 (764)
.+..+++.+++ +++.|++||||||..=
T Consensus 40 ~L~~~i~~~~~~~vLL~GppGtGKTtlAr 68 (447)
T 3pvs_A 40 PLPRAIEAGHLHSMILWGPPGTGKTTLAE 68 (447)
T ss_dssp HHHHHHHHTCCCEEEEECSTTSSHHHHHH
T ss_pred HHHHHHHcCCCcEEEEECCCCCcHHHHHH
Confidence 34567777765 8999999999997653
No 314
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=75.37 E-value=0.98 Score=45.06 Aligned_cols=22 Identities=32% Similarity=0.379 Sum_probs=18.7
Q ss_pred cCCeEEEEecCCCCccccHHHH
Q 038192 49 DNSAVIICGETGCGKTTQVPQF 70 (764)
Q Consensus 49 ~~~vviI~GeTGSGKTTqvPq~ 70 (764)
.+..+++.|..|||||||.-..
T Consensus 4 ~g~~i~~eG~~g~GKst~~~~l 25 (216)
T 3tmk_A 4 RGKLILIEGLDRTGKTTQCNIL 25 (216)
T ss_dssp CCCEEEEEECSSSSHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHH
Confidence 4678999999999999998653
No 315
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=75.17 E-value=1 Score=46.62 Aligned_cols=18 Identities=33% Similarity=0.541 Sum_probs=15.1
Q ss_pred CeEEEEecCCCCccccHH
Q 038192 51 SAVIICGETGCGKTTQVP 68 (764)
Q Consensus 51 ~vviI~GeTGSGKTTqvP 68 (764)
..+++.|++||||||..=
T Consensus 48 ~~~ll~G~~GtGKt~la~ 65 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAK 65 (311)
T ss_dssp EEEEEESCSSSSHHHHHH
T ss_pred eEEEEECCCCcCHHHHHH
Confidence 478999999999997643
No 316
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=75.17 E-value=0.83 Score=44.78 Aligned_cols=17 Identities=35% Similarity=0.567 Sum_probs=14.5
Q ss_pred EEEEecCCCCccccHHH
Q 038192 53 VIICGETGCGKTTQVPQ 69 (764)
Q Consensus 53 viI~GeTGSGKTTqvPq 69 (764)
+++.|.-|||||||+-.
T Consensus 3 I~~EG~DGsGKsTq~~~ 19 (197)
T 3hjn_A 3 ITFEGIDGSGKSTQIQL 19 (197)
T ss_dssp EEEECSTTSSHHHHHHH
T ss_pred EEEECCCCCCHHHHHHH
Confidence 67899999999999643
No 317
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=75.15 E-value=1.5 Score=45.53 Aligned_cols=31 Identities=26% Similarity=0.417 Sum_probs=22.4
Q ss_pred HHHHHHHHHcCC--eEEEEecCCCCccccHHHH
Q 038192 40 EQEIMEAVNDNS--AVIICGETGCGKTTQVPQF 70 (764)
Q Consensus 40 ~~~Il~~l~~~~--vviI~GeTGSGKTTqvPq~ 70 (764)
.+.+...+.+++ .+++.|++|+||||.+=.+
T Consensus 34 ~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~l 66 (327)
T 1iqp_A 34 VKRLKHYVKTGSMPHLLFAGPPGVGKTTAALAL 66 (327)
T ss_dssp HHHHHHHHHHTCCCEEEEESCTTSSHHHHHHHH
T ss_pred HHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHH
Confidence 344556666664 5899999999999865443
No 318
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=75.14 E-value=1.4 Score=46.92 Aligned_cols=30 Identities=20% Similarity=0.357 Sum_probs=21.9
Q ss_pred HHHHHHHHcCC---eEEEEecCCCCccccHHHH
Q 038192 41 QEIMEAVNDNS---AVIICGETGCGKTTQVPQF 70 (764)
Q Consensus 41 ~~Il~~l~~~~---vviI~GeTGSGKTTqvPq~ 70 (764)
+.+..++..++ .+++.|++|+||||.+=.+
T Consensus 26 ~~L~~~l~~~~~~~~~ll~G~~G~GKT~la~~l 58 (373)
T 1jr3_A 26 TALANGLSLGRIHHAYLFSGTRGVGKTSIARLL 58 (373)
T ss_dssp HHHHHHHHHTCCCSEEEEESCTTSSHHHHHHHH
T ss_pred HHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHH
Confidence 34555666655 4899999999999877444
No 319
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=75.14 E-value=0.7 Score=49.97 Aligned_cols=23 Identities=26% Similarity=0.372 Sum_probs=19.3
Q ss_pred HHcCCeEEEEecCCCCccccHHH
Q 038192 47 VNDNSAVIICGETGCGKTTQVPQ 69 (764)
Q Consensus 47 l~~~~vviI~GeTGSGKTTqvPq 69 (764)
|..+.++.|.|+.||||||.+=.
T Consensus 51 i~~Gei~~IiGpnGaGKSTLlr~ 73 (366)
T 3tui_C 51 VPAGQIYGVIGASGAGKSTLIRC 73 (366)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHH
T ss_pred EcCCCEEEEEcCCCchHHHHHHH
Confidence 35688999999999999998643
No 320
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=75.05 E-value=1.5 Score=47.04 Aligned_cols=25 Identities=32% Similarity=0.478 Sum_probs=17.9
Q ss_pred cCCeEEEEecCCCCccccHHHHHHHh
Q 038192 49 DNSAVIICGETGCGKTTQVPQFLFEA 74 (764)
Q Consensus 49 ~~~vviI~GeTGSGKTTqvPq~Lle~ 74 (764)
....+++.|++|||||+. -+.|.+.
T Consensus 50 ~~~~vll~GppGtGKT~l-a~~ia~~ 74 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLL-AETLARL 74 (363)
T ss_dssp CCCCEEEECCTTSSHHHH-HHHHHHH
T ss_pred CCCeEEEECCCCCCHHHH-HHHHHHH
Confidence 345689999999999974 3444443
No 321
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=75.03 E-value=3 Score=43.50 Aligned_cols=56 Identities=16% Similarity=0.173 Sum_probs=32.4
Q ss_pred CCeEEEEecCCCCccccHHHHHHHhccCCCCCCCCCceEEEecccHHHHHHHHHHHHHHhC
Q 038192 50 NSAVIICGETGCGKTTQVPQFLFEAGFGSNRCSSRSGRIGVTQPRRVAVLATAKRVAFELG 110 (764)
Q Consensus 50 ~~vviI~GeTGSGKTTqvPq~Lle~~~~~~~~~~~~~~Ii~tQPRRiaAisvA~RVa~E~g 110 (764)
..++.++|++||||||..-....-.....+ ...++-.-++|-++......++.+.|
T Consensus 98 ~~~i~i~g~~G~GKTT~~~~la~~~~~~~~-----~v~l~~~d~~~~~~~~ql~~~~~~~~ 153 (295)
T 1ls1_A 98 RNLWFLVGLQGSGKTTTAAKLALYYKGKGR-----RPLLVAADTQRPAAREQLRLLGEKVG 153 (295)
T ss_dssp SEEEEEECCTTTTHHHHHHHHHHHHHHTTC-----CEEEEECCSSCHHHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCC-----eEEEecCCcccHhHHHHHHHhcccCC
Confidence 457888899999999976554322111111 14555566788776543233444443
No 322
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=74.98 E-value=1.4 Score=45.99 Aligned_cols=21 Identities=29% Similarity=0.442 Sum_probs=16.8
Q ss_pred CeEEEEecCCCCccccHHHHH
Q 038192 51 SAVIICGETGCGKTTQVPQFL 71 (764)
Q Consensus 51 ~vviI~GeTGSGKTTqvPq~L 71 (764)
..++|.|++|+||||..=.+.
T Consensus 39 ~~vll~G~~GtGKT~la~~i~ 59 (324)
T 1hqc_A 39 EHLLLFGPPGLGKTTLAHVIA 59 (324)
T ss_dssp CCCEEECCTTCCCHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHH
Confidence 568999999999998665443
No 323
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=74.85 E-value=1.5 Score=43.61 Aligned_cols=39 Identities=21% Similarity=0.264 Sum_probs=30.1
Q ss_pred CCeEEEEecCCCCccccHHHHHHHhccCCCCCCCCCceEEEecccH
Q 038192 50 NSAVIICGETGCGKTTQVPQFLFEAGFGSNRCSSRSGRIGVTQPRR 95 (764)
Q Consensus 50 ~~vviI~GeTGSGKTTqvPq~Lle~~~~~~~~~~~~~~Ii~tQPRR 95 (764)
..+.+++|+-||||||.+-+.+....... .++++.||..
T Consensus 28 G~l~vitG~MgsGKTT~lL~~a~r~~~~g-------~kVli~k~~~ 66 (214)
T 2j9r_A 28 GWIEVICGSMFSGKSEELIRRVRRTQFAK-------QHAIVFKPCI 66 (214)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHHHHTT-------CCEEEEECC-
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHCC-------CEEEEEEecc
Confidence 56888999999999999999887654322 3688888864
No 324
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=74.84 E-value=1.2 Score=47.01 Aligned_cols=20 Identities=30% Similarity=0.501 Sum_probs=16.4
Q ss_pred CeEEEEecCCCCccccHHHH
Q 038192 51 SAVIICGETGCGKTTQVPQF 70 (764)
Q Consensus 51 ~vviI~GeTGSGKTTqvPq~ 70 (764)
..++|.|++||||||..=.+
T Consensus 56 ~~vll~G~~GtGKT~la~~i 75 (338)
T 3pfi_A 56 DHILFSGPAGLGKTTLANII 75 (338)
T ss_dssp CCEEEECSTTSSHHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHHH
Confidence 46899999999999866544
No 325
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=74.72 E-value=1 Score=45.56 Aligned_cols=22 Identities=27% Similarity=0.498 Sum_probs=18.4
Q ss_pred cCCeEEEEecCCCCccccHHHH
Q 038192 49 DNSAVIICGETGCGKTTQVPQF 70 (764)
Q Consensus 49 ~~~vviI~GeTGSGKTTqvPq~ 70 (764)
.+..+++.|..|||||||.-..
T Consensus 26 ~~~~i~~eG~~GsGKsT~~~~l 47 (236)
T 3lv8_A 26 NAKFIVIEGLEGAGKSTAIQVV 47 (236)
T ss_dssp CCCEEEEEESTTSCHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHH
Confidence 4678999999999999997543
No 326
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=74.70 E-value=0.99 Score=47.51 Aligned_cols=28 Identities=18% Similarity=0.325 Sum_probs=21.5
Q ss_pred HHHHHHHHHcCCeEEEEecCCCCccccH
Q 038192 40 EQEIMEAVNDNSAVIICGETGCGKTTQV 67 (764)
Q Consensus 40 ~~~Il~~l~~~~vviI~GeTGSGKTTqv 67 (764)
.+.+..++..+..+++.|++|+|||+..
T Consensus 36 ~~~l~~~l~~~~~vll~G~pGtGKT~la 63 (331)
T 2r44_A 36 INRLLIGICTGGHILLEGVPGLAKTLSV 63 (331)
T ss_dssp HHHHHHHHHHTCCEEEESCCCHHHHHHH
T ss_pred HHHHHHHHHcCCeEEEECCCCCcHHHHH
Confidence 3445566666778999999999999654
No 327
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=74.36 E-value=1.1 Score=47.27 Aligned_cols=21 Identities=33% Similarity=0.558 Sum_probs=18.0
Q ss_pred CeEEEEecCCCCccccHHHHH
Q 038192 51 SAVIICGETGCGKTTQVPQFL 71 (764)
Q Consensus 51 ~vviI~GeTGSGKTTqvPq~L 71 (764)
++++|+|..||||||.+-.++
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~ 25 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHIL 25 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHH
T ss_pred cEEEEEecCCCCHHHHHHHHH
Confidence 479999999999999986544
No 328
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=74.28 E-value=0.52 Score=50.68 Aligned_cols=22 Identities=32% Similarity=0.445 Sum_probs=18.7
Q ss_pred HcCCeEEEEecCCCCccccHHH
Q 038192 48 NDNSAVIICGETGCGKTTQVPQ 69 (764)
Q Consensus 48 ~~~~vviI~GeTGSGKTTqvPq 69 (764)
..+.++.|.|+.||||||.+=.
T Consensus 24 ~~Ge~~~llGpnGsGKSTLLr~ 45 (348)
T 3d31_A 24 ESGEYFVILGPTGAGKTLFLEL 45 (348)
T ss_dssp CTTCEEEEECCCTHHHHHHHHH
T ss_pred cCCCEEEEECCCCccHHHHHHH
Confidence 5678999999999999997643
No 329
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=74.22 E-value=0.89 Score=44.89 Aligned_cols=18 Identities=33% Similarity=0.510 Sum_probs=15.7
Q ss_pred CeEEEEecCCCCccccHH
Q 038192 51 SAVIICGETGCGKTTQVP 68 (764)
Q Consensus 51 ~vviI~GeTGSGKTTqvP 68 (764)
..+++.|.-|||||||+-
T Consensus 3 kFI~~EG~dGsGKsTq~~ 20 (205)
T 4hlc_A 3 AFITFEGPEGSGKTTVIN 20 (205)
T ss_dssp EEEEEECCTTSCHHHHHH
T ss_pred CEEEEECCCCCcHHHHHH
Confidence 467899999999999974
No 330
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=74.11 E-value=0.77 Score=44.87 Aligned_cols=24 Identities=25% Similarity=0.396 Sum_probs=17.7
Q ss_pred CCeEEEEecCCCCccccHHHHHHHh
Q 038192 50 NSAVIICGETGCGKTTQVPQFLFEA 74 (764)
Q Consensus 50 ~~vviI~GeTGSGKTTqvPq~Lle~ 74 (764)
+-++.|+|..||||||.-- +|.+.
T Consensus 12 ~~iIgltG~~GSGKSTva~-~L~~~ 35 (192)
T 2grj_A 12 HMVIGVTGKIGTGKSTVCE-ILKNK 35 (192)
T ss_dssp EEEEEEECSTTSSHHHHHH-HHHHH
T ss_pred ceEEEEECCCCCCHHHHHH-HHHHh
Confidence 3467899999999998654 44443
No 331
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=73.96 E-value=1.4 Score=46.88 Aligned_cols=23 Identities=39% Similarity=0.473 Sum_probs=18.7
Q ss_pred CCeEEEEecCCCCccccHHHHHH
Q 038192 50 NSAVIICGETGCGKTTQVPQFLF 72 (764)
Q Consensus 50 ~~vviI~GeTGSGKTTqvPq~Ll 72 (764)
...++|.|++|+||||.+=.+.-
T Consensus 45 ~~~vli~G~~G~GKTtl~~~l~~ 67 (386)
T 2qby_A 45 PNNIFIYGLTGTGKTAVVKFVLS 67 (386)
T ss_dssp CCCEEEEECTTSSHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHH
Confidence 56899999999999998765543
No 332
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=73.74 E-value=1 Score=44.30 Aligned_cols=20 Identities=25% Similarity=0.527 Sum_probs=16.5
Q ss_pred CCeEEEEecCCCCccccHHH
Q 038192 50 NSAVIICGETGCGKTTQVPQ 69 (764)
Q Consensus 50 ~~vviI~GeTGSGKTTqvPq 69 (764)
..+.+|.|++||||||.+=-
T Consensus 23 ~~~~~I~G~NgsGKStil~a 42 (203)
T 3qks_A 23 EGINLIIGQNGSGKSSLLDA 42 (203)
T ss_dssp SEEEEEECCTTSSHHHHHHH
T ss_pred CCeEEEEcCCCCCHHHHHHH
Confidence 35889999999999997543
No 333
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=73.71 E-value=0.99 Score=49.38 Aligned_cols=19 Identities=37% Similarity=0.620 Sum_probs=15.7
Q ss_pred CeEEEEecCCCCccccHHH
Q 038192 51 SAVIICGETGCGKTTQVPQ 69 (764)
Q Consensus 51 ~vviI~GeTGSGKTTqvPq 69 (764)
.+++|+|+|||||||..-.
T Consensus 3 ~~i~i~GptgsGKttla~~ 21 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQ 21 (409)
T ss_dssp EEEEEEECSSSSHHHHHHH
T ss_pred cEEEEECcchhhHHHHHHH
Confidence 4789999999999986543
No 334
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=73.70 E-value=0.74 Score=44.60 Aligned_cols=21 Identities=19% Similarity=0.442 Sum_probs=17.0
Q ss_pred HcCCeEEEEecCCCCccccHH
Q 038192 48 NDNSAVIICGETGCGKTTQVP 68 (764)
Q Consensus 48 ~~~~vviI~GeTGSGKTTqvP 68 (764)
..+..++|.|++||||||.+=
T Consensus 24 ~~~~~v~lvG~~g~GKSTLl~ 44 (210)
T 1pui_A 24 DTGIEVAFAGRSNAGKSSALN 44 (210)
T ss_dssp SCSEEEEEEECTTSSHHHHHT
T ss_pred CCCcEEEEECCCCCCHHHHHH
Confidence 345678999999999998763
No 335
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=73.65 E-value=0.94 Score=46.15 Aligned_cols=20 Identities=30% Similarity=0.343 Sum_probs=17.0
Q ss_pred cCCeEEEEecCCCCccccHH
Q 038192 49 DNSAVIICGETGCGKTTQVP 68 (764)
Q Consensus 49 ~~~vviI~GeTGSGKTTqvP 68 (764)
+...++|.|..|||||||.-
T Consensus 23 ~~~~I~ieG~~GsGKST~~~ 42 (263)
T 1p5z_B 23 RIKKISIEGNIAAGKSTFVN 42 (263)
T ss_dssp CCEEEEEECSTTSSHHHHHT
T ss_pred CceEEEEECCCCCCHHHHHH
Confidence 34578999999999999974
No 336
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=73.60 E-value=0.94 Score=45.70 Aligned_cols=20 Identities=30% Similarity=0.511 Sum_probs=16.1
Q ss_pred eEEEEecCCCCccccHHHHH
Q 038192 52 AVIICGETGCGKTTQVPQFL 71 (764)
Q Consensus 52 vviI~GeTGSGKTTqvPq~L 71 (764)
-+++.|++||||||.+=.+.
T Consensus 51 g~ll~G~~G~GKTtl~~~i~ 70 (254)
T 1ixz_A 51 GVLLVGPPGVGKTHLARAVA 70 (254)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 38999999999998765443
No 337
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=73.57 E-value=1.5 Score=45.96 Aligned_cols=19 Identities=32% Similarity=0.588 Sum_probs=15.7
Q ss_pred CeEEEEecCCCCccccHHH
Q 038192 51 SAVIICGETGCGKTTQVPQ 69 (764)
Q Consensus 51 ~vviI~GeTGSGKTTqvPq 69 (764)
..++|.|++||||||.+=.
T Consensus 38 ~~lll~G~~GtGKT~la~~ 56 (324)
T 1l8q_A 38 NPIFIYGSVGTGKTHLLQA 56 (324)
T ss_dssp SSEEEECSSSSSHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHH
Confidence 4789999999999976543
No 338
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=73.29 E-value=1.2 Score=47.12 Aligned_cols=53 Identities=9% Similarity=0.070 Sum_probs=30.1
Q ss_pred CCCCHHHHHhhhcc---CCCCceEEEEecCcccccCCCCCeE--EEEeCCcccceeeccC
Q 038192 444 AMLPAAAQLRVFED---VKEGERLVVVSTNVAETSLTIPGIK--YVVDTGREKVKKYNSA 498 (764)
Q Consensus 444 s~l~~~eQ~~vf~~---~~~g~rKVIlsTNIAEtSITIpdV~--~VID~G~~K~~~yd~~ 498 (764)
++|++..+..+++- ...|..-|+++.+ .+ -+.+-|.. ++++-|..+...++..
T Consensus 252 ~~LD~~~~~~l~~~l~~~~~~~~vi~~tH~-~~-~~~~~d~~~~v~~~~g~s~~~~~~~~ 309 (322)
T 1e69_A 252 SPLDDYNAERFKRLLKENSKHTQFIVITHN-KI-VMEAADLLHGVTMVNGVSAIVPVEVE 309 (322)
T ss_dssp SSCCHHHHHHHHHHHHHHTTTSEEEEECCC-TT-GGGGCSEEEEEEESSSCEEEEECCC-
T ss_pred CCCCHHHHHHHHHHHHHhcCCCeEEEEECC-HH-HHhhCceEEEEEEeCCEEEEEEEEcc
Confidence 67888877766543 2345444445555 44 24455644 5566677776666543
No 339
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=73.26 E-value=2 Score=44.49 Aligned_cols=17 Identities=35% Similarity=0.478 Sum_probs=14.7
Q ss_pred eEEEEecCCCCccccHH
Q 038192 52 AVIICGETGCGKTTQVP 68 (764)
Q Consensus 52 vviI~GeTGSGKTTqvP 68 (764)
.+++.|++|||||+..=
T Consensus 69 ~vll~G~~GtGKT~la~ 85 (309)
T 3syl_A 69 HMSFTGNPGTGKTTVAL 85 (309)
T ss_dssp EEEEEECTTSSHHHHHH
T ss_pred eEEEECCCCCCHHHHHH
Confidence 68999999999998643
No 340
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=73.12 E-value=1.6 Score=46.48 Aligned_cols=26 Identities=35% Similarity=0.659 Sum_probs=19.2
Q ss_pred HHHHHHcC----CeEEEEecCCCCccccHH
Q 038192 43 IMEAVNDN----SAVIICGETGCGKTTQVP 68 (764)
Q Consensus 43 Il~~l~~~----~vviI~GeTGSGKTTqvP 68 (764)
+.+.+..+ +.+++.|++|+|||+..=
T Consensus 59 l~~~~~~~~~~~~~vLl~GppGtGKT~la~ 88 (368)
T 3uk6_A 59 VLEMIREGKIAGRAVLIAGQPGTGKTAIAM 88 (368)
T ss_dssp HHHHHHTTCCTTCEEEEEESTTSSHHHHHH
T ss_pred HHHHHHcCCCCCCEEEEECCCCCCHHHHHH
Confidence 45555554 369999999999997543
No 341
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=73.01 E-value=1.3 Score=47.09 Aligned_cols=23 Identities=35% Similarity=0.468 Sum_probs=18.3
Q ss_pred cCCeEEEEecCCCCccccHHHHH
Q 038192 49 DNSAVIICGETGCGKTTQVPQFL 71 (764)
Q Consensus 49 ~~~vviI~GeTGSGKTTqvPq~L 71 (764)
....++|.|++||||||.+=.+.
T Consensus 43 ~~~~vll~G~~G~GKT~l~~~~~ 65 (387)
T 2v1u_A 43 KPSNALLYGLTGTGKTAVARLVL 65 (387)
T ss_dssp CCCCEEECBCTTSSHHHHHHHHH
T ss_pred CCCcEEEECCCCCCHHHHHHHHH
Confidence 34679999999999999765544
No 342
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=72.91 E-value=0.99 Score=52.09 Aligned_cols=23 Identities=39% Similarity=0.550 Sum_probs=19.4
Q ss_pred HHcCCeEEEEecCCCCccccHHH
Q 038192 47 VNDNSAVIICGETGCGKTTQVPQ 69 (764)
Q Consensus 47 l~~~~vviI~GeTGSGKTTqvPq 69 (764)
+..++++.|.|++||||||.+-.
T Consensus 378 i~~G~~~~ivG~sGsGKSTll~~ 400 (598)
T 3qf4_B 378 IKPGQKVALVGPTGSGKTTIVNL 400 (598)
T ss_dssp CCTTCEEEEECCTTSSTTHHHHH
T ss_pred EcCCCEEEEECCCCCcHHHHHHH
Confidence 45678999999999999998743
No 343
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=72.89 E-value=1 Score=46.70 Aligned_cols=19 Identities=26% Similarity=0.455 Sum_probs=16.2
Q ss_pred CeEEEEecCCCCccccHHH
Q 038192 51 SAVIICGETGCGKTTQVPQ 69 (764)
Q Consensus 51 ~vviI~GeTGSGKTTqvPq 69 (764)
.+++|+|.+||||||+.-.
T Consensus 3 ~~I~l~G~~GsGKST~a~~ 21 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWARE 21 (301)
T ss_dssp EEEEEECCTTSSHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHH
Confidence 3689999999999998654
No 344
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=72.83 E-value=1.1 Score=49.10 Aligned_cols=28 Identities=21% Similarity=0.261 Sum_probs=23.6
Q ss_pred HHcCCeEEEEecCCCCccccHHHHHHHh
Q 038192 47 VNDNSAVIICGETGCGKTTQVPQFLFEA 74 (764)
Q Consensus 47 l~~~~vviI~GeTGSGKTTqvPq~Lle~ 74 (764)
|..+.++.|.|++||||||..-++++..
T Consensus 175 I~~Gei~~I~G~sGsGKTTLl~~la~~~ 202 (400)
T 3lda_A 175 VETGSITELFGEFRTGKSQLCHTLAVTC 202 (400)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHT
T ss_pred cCCCcEEEEEcCCCCChHHHHHHHHHHh
Confidence 3457899999999999999999887654
No 345
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=72.77 E-value=1.1 Score=45.08 Aligned_cols=19 Identities=32% Similarity=0.352 Sum_probs=16.1
Q ss_pred CeEEEEecCCCCccccHHH
Q 038192 51 SAVIICGETGCGKTTQVPQ 69 (764)
Q Consensus 51 ~vviI~GeTGSGKTTqvPq 69 (764)
..++|.|..|||||||.-.
T Consensus 3 ~~i~~~G~~g~GKtt~~~~ 21 (241)
T 2ocp_A 3 RRLSIEGNIAVGKSTFVKL 21 (241)
T ss_dssp EEEEEEECTTSSHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHH
Confidence 4688999999999998753
No 346
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=72.25 E-value=1.8 Score=45.41 Aligned_cols=23 Identities=17% Similarity=0.229 Sum_probs=19.3
Q ss_pred CeEEEEecCCCCccccHHHHHHH
Q 038192 51 SAVIICGETGCGKTTQVPQFLFE 73 (764)
Q Consensus 51 ~vviI~GeTGSGKTTqvPq~Lle 73 (764)
++++|.|+.|+||||.+=++.-+
T Consensus 31 ~~v~i~G~~G~GKT~L~~~~~~~ 53 (357)
T 2fna_A 31 PITLVLGLRRTGKSSIIKIGINE 53 (357)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHHHh
Confidence 68999999999999988766543
No 347
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=72.22 E-value=0.95 Score=48.55 Aligned_cols=28 Identities=21% Similarity=0.335 Sum_probs=23.8
Q ss_pred HHcCCeEEEEecCCCCccccHHHHHHHh
Q 038192 47 VNDNSAVIICGETGCGKTTQVPQFLFEA 74 (764)
Q Consensus 47 l~~~~vviI~GeTGSGKTTqvPq~Lle~ 74 (764)
+..+.++.|.|++||||||.+-+++...
T Consensus 128 i~~G~i~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 128 IETQAITEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp EESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4457899999999999999998887754
No 348
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=72.08 E-value=1.1 Score=43.33 Aligned_cols=18 Identities=28% Similarity=0.427 Sum_probs=15.4
Q ss_pred eEEEEecCCCCccccHHH
Q 038192 52 AVIICGETGCGKTTQVPQ 69 (764)
Q Consensus 52 vviI~GeTGSGKTTqvPq 69 (764)
++.|+|+.||||||..-.
T Consensus 4 ~i~i~G~~GsGKst~~~~ 21 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARR 21 (208)
T ss_dssp EEEEECSTTSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 789999999999986543
No 349
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=72.00 E-value=2 Score=42.91 Aligned_cols=41 Identities=17% Similarity=0.178 Sum_probs=29.4
Q ss_pred HcCCeEEEEecCCCCccccHHHHHHHhccCCCCCCCCCceEEEecccH
Q 038192 48 NDNSAVIICGETGCGKTTQVPQFLFEAGFGSNRCSSRSGRIGVTQPRR 95 (764)
Q Consensus 48 ~~~~vviI~GeTGSGKTTqvPq~Lle~~~~~~~~~~~~~~Ii~tQPRR 95 (764)
..+.+.+|+|+-||||||.+-+.+....... .++++.+|..
T Consensus 26 ~~G~I~vitG~M~sGKTT~Llr~~~r~~~~g-------~kvli~kp~~ 66 (219)
T 3e2i_A 26 HSGWIECITGSMFSGKSEELIRRLRRGIYAK-------QKVVVFKPAI 66 (219)
T ss_dssp -CCEEEEEEECTTSCHHHHHHHHHHHHHHTT-------CCEEEEEEC-
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHHHHcC-------CceEEEEecc
Confidence 4568999999999999998777665543321 3678888864
No 350
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=72.00 E-value=1.2 Score=45.56 Aligned_cols=20 Identities=30% Similarity=0.388 Sum_probs=17.4
Q ss_pred CCeEEEEecCCCCccccHHH
Q 038192 50 NSAVIICGETGCGKTTQVPQ 69 (764)
Q Consensus 50 ~~vviI~GeTGSGKTTqvPq 69 (764)
+.+++|.|..||||||..-.
T Consensus 48 g~~i~l~G~~GsGKSTl~~~ 67 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKI 67 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHH
Confidence 78899999999999997543
No 351
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=71.93 E-value=1.3 Score=46.51 Aligned_cols=26 Identities=27% Similarity=0.515 Sum_probs=19.1
Q ss_pred HcCCeEEEEecCCCCccccHHHHHHHh
Q 038192 48 NDNSAVIICGETGCGKTTQVPQFLFEA 74 (764)
Q Consensus 48 ~~~~vviI~GeTGSGKTTqvPq~Lle~ 74 (764)
.....|+|.|+||+|||+. -+.|...
T Consensus 23 ~~~~~vLi~Ge~GtGKt~l-Ar~i~~~ 48 (304)
T 1ojl_A 23 PSDATVLIHGDSGTGKELV-ARALHAC 48 (304)
T ss_dssp STTSCEEEESCTTSCHHHH-HHHHHHH
T ss_pred CCCCcEEEECCCCchHHHH-HHHHHHh
Confidence 4456789999999999964 4555554
No 352
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=71.87 E-value=3.3 Score=46.63 Aligned_cols=55 Identities=16% Similarity=0.186 Sum_probs=36.2
Q ss_pred eEEEEecCCCCccccHHHHHHHhccCCCCCCCCCceEEEecccHHHHHHHHHHHHHHhCC
Q 038192 52 AVIICGETGCGKTTQVPQFLFEAGFGSNRCSSRSGRIGVTQPRRVAVLATAKRVAFELGL 111 (764)
Q Consensus 52 vviI~GeTGSGKTTqvPq~Lle~~~~~~~~~~~~~~Ii~tQPRRiaAisvA~RVa~E~g~ 111 (764)
+++|+|.+|+||||.+-........... ..-++..-|.|.+|+...+..+...+.
T Consensus 103 vI~ivG~~GvGKTTl~~kLA~~l~~~G~-----kVllVd~D~~r~aa~~qL~~~~~~~~i 157 (504)
T 2j37_W 103 VIMFVGLQGSGKTTTCSKLAYYYQRKGW-----KTCLICADTFRAGAFDQLKQNATKARI 157 (504)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTTC-----CEEEEEECCSSSHHHHHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhCCC-----eEEEEeccccchhHHHHHHHHhhccCc
Confidence 7888999999999987776654322111 255677778888886554444444443
No 353
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=71.68 E-value=1.7 Score=46.54 Aligned_cols=21 Identities=24% Similarity=0.377 Sum_probs=17.0
Q ss_pred CCeEEEEecCCCCccccHHHH
Q 038192 50 NSAVIICGETGCGKTTQVPQF 70 (764)
Q Consensus 50 ~~vviI~GeTGSGKTTqvPq~ 70 (764)
...+++.|++||||||..=.+
T Consensus 117 ~~~vLl~GppGtGKT~la~ai 137 (357)
T 3d8b_A 117 PKGILLFGPPGTGKTLIGKCI 137 (357)
T ss_dssp CSEEEEESSTTSSHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHH
Confidence 457899999999999866544
No 354
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=71.55 E-value=0.54 Score=50.67 Aligned_cols=23 Identities=30% Similarity=0.436 Sum_probs=19.2
Q ss_pred HHcCCeEEEEecCCCCccccHHH
Q 038192 47 VNDNSAVIICGETGCGKTTQVPQ 69 (764)
Q Consensus 47 l~~~~vviI~GeTGSGKTTqvPq 69 (764)
+..+.++.|.|+.||||||.+=.
T Consensus 28 i~~Ge~~~llGpnGsGKSTLLr~ 50 (353)
T 1oxx_K 28 IENGERFGILGPSGAGKTTFMRI 50 (353)
T ss_dssp ECTTCEEEEECSCHHHHHHHHHH
T ss_pred ECCCCEEEEECCCCCcHHHHHHH
Confidence 35678999999999999998654
No 355
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=71.53 E-value=1.5 Score=45.93 Aligned_cols=22 Identities=23% Similarity=0.267 Sum_probs=17.9
Q ss_pred HcCCeEEEEecCCCCccccHHH
Q 038192 48 NDNSAVIICGETGCGKTTQVPQ 69 (764)
Q Consensus 48 ~~~~vviI~GeTGSGKTTqvPq 69 (764)
..+.++.|.|++||||||.+=.
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~ 99 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARV 99 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHH
Confidence 3456889999999999998653
No 356
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=71.52 E-value=0.95 Score=52.02 Aligned_cols=22 Identities=27% Similarity=0.522 Sum_probs=18.6
Q ss_pred HHcCCeEEEEecCCCCccccHH
Q 038192 47 VNDNSAVIICGETGCGKTTQVP 68 (764)
Q Consensus 47 l~~~~vviI~GeTGSGKTTqvP 68 (764)
+..++.+.|.|++||||||.+=
T Consensus 364 i~~G~~~~ivG~sGsGKSTll~ 385 (578)
T 4a82_A 364 IEKGETVAFVGMSGGGKSTLIN 385 (578)
T ss_dssp ECTTCEEEEECSTTSSHHHHHT
T ss_pred ECCCCEEEEECCCCChHHHHHH
Confidence 3567899999999999999763
No 357
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=71.45 E-value=3 Score=44.07 Aligned_cols=44 Identities=18% Similarity=0.159 Sum_probs=27.6
Q ss_pred CeEEEEecCCCCccccHHHHHHHhccCCCCCCCCCceEEEecccHHHHH
Q 038192 51 SAVIICGETGCGKTTQVPQFLFEAGFGSNRCSSRSGRIGVTQPRRVAVL 99 (764)
Q Consensus 51 ~vviI~GeTGSGKTTqvPq~Lle~~~~~~~~~~~~~~Ii~tQPRRiaAi 99 (764)
.++.|+|++|+||||.+-..........+ ...++-.-++|.++.
T Consensus 106 ~vI~ivG~~G~GKTT~~~~LA~~l~~~g~-----kVllid~D~~r~~a~ 149 (320)
T 1zu4_A 106 NIFMLVGVNGTGKTTSLAKMANYYAELGY-----KVLIAAADTFRAGAT 149 (320)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTTC-----CEEEEECCCSCHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHCCC-----eEEEEeCCCcchhHH
Confidence 47889999999999976554322211111 144555667787764
No 358
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=71.43 E-value=1.9 Score=49.75 Aligned_cols=29 Identities=31% Similarity=0.430 Sum_probs=24.4
Q ss_pred HHHHHHHHHcCCeEEEEecCCCCccccHH
Q 038192 40 EQEIMEAVNDNSAVIICGETGCGKTTQVP 68 (764)
Q Consensus 40 ~~~Il~~l~~~~vviI~GeTGSGKTTqvP 68 (764)
.+.+-.++..+..+++.|++||||||..=
T Consensus 50 l~~l~~~i~~g~~vll~Gp~GtGKTtlar 78 (604)
T 3k1j_A 50 VEVIKTAANQKRHVLLIGEPGTGKSMLGQ 78 (604)
T ss_dssp HHHHHHHHHTTCCEEEECCTTSSHHHHHH
T ss_pred HhhccccccCCCEEEEEeCCCCCHHHHHH
Confidence 45677778889999999999999998653
No 359
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=71.39 E-value=2.6 Score=47.59 Aligned_cols=45 Identities=16% Similarity=0.353 Sum_probs=30.0
Q ss_pred HcCCeEEEEecCCCCccccHHHHHHHhccCCCCCCCCCceEEEecccH
Q 038192 48 NDNSAVIICGETGCGKTTQVPQFLFEAGFGSNRCSSRSGRIGVTQPRR 95 (764)
Q Consensus 48 ~~~~vviI~GeTGSGKTTqvPq~Lle~~~~~~~~~~~~~~Ii~tQPRR 95 (764)
.....++|.|.|||||||.+=-+++.-.+... ....++++.-|..
T Consensus 165 ~~~pHlLIaG~TGSGKSt~L~~li~sLl~~~~---p~~v~l~liDpK~ 209 (512)
T 2ius_A 165 AKMPHLLVAGTTGSGASVGVNAMILSMLYKAQ---PEDVRFIMIDPKM 209 (512)
T ss_dssp GGSCSEEEECCTTSSHHHHHHHHHHHHHTTCC---TTTEEEEEECCSS
T ss_pred ccCceEEEECCCCCCHHHHHHHHHHHHHHhCC---CceEEEEEECCch
Confidence 44577999999999999987766654333211 1135677777764
No 360
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=71.38 E-value=3.1 Score=45.97 Aligned_cols=56 Identities=21% Similarity=0.213 Sum_probs=36.6
Q ss_pred CeEEEEecCCCCccccHHHHHHHhccCCCCCCCCCceEEEecccHHHHHHHHHHHHHHhC
Q 038192 51 SAVIICGETGCGKTTQVPQFLFEAGFGSNRCSSRSGRIGVTQPRRVAVLATAKRVAFELG 110 (764)
Q Consensus 51 ~vviI~GeTGSGKTTqvPq~Lle~~~~~~~~~~~~~~Ii~tQPRRiaAisvA~RVa~E~g 110 (764)
.+++++|.+|+||||..-..........+ ..+.++-+-|.|-+|+.....++...|
T Consensus 101 ~vI~ivG~~GvGKTT~a~~LA~~l~~~~G----~kVllvd~D~~r~~a~~ql~~~~~~~~ 156 (433)
T 2xxa_A 101 AVVLMAGLQGAGKTTSVGKLGKFLREKHK----KKVLVVSADVYRPAAIKQLETLAEQVG 156 (433)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHTSC----CCEEEEECCCSSTTHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHhcC----CeEEEEecCCCCccHHHHHHhhcccCC
Confidence 37888999999999986665543322101 126777888999888765444444444
No 361
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=71.36 E-value=2.1 Score=44.33 Aligned_cols=31 Identities=32% Similarity=0.476 Sum_probs=22.3
Q ss_pred HHHHHHHHHcCC--eEEEEecCCCCccccHHHH
Q 038192 40 EQEIMEAVNDNS--AVIICGETGCGKTTQVPQF 70 (764)
Q Consensus 40 ~~~Il~~l~~~~--vviI~GeTGSGKTTqvPq~ 70 (764)
.+.+.+.+.+++ .+++.|++|+||||.+=.+
T Consensus 30 ~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l 62 (323)
T 1sxj_B 30 IDRLQQIAKDGNMPHMIISGMPGIGKTTSVHCL 62 (323)
T ss_dssp HHHHHHHHHSCCCCCEEEECSTTSSHHHHHHHH
T ss_pred HHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHH
Confidence 345666666654 3899999999999865443
No 362
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=71.17 E-value=1.3 Score=45.78 Aligned_cols=20 Identities=30% Similarity=0.700 Sum_probs=15.8
Q ss_pred eEEEEecCCCCccccHHHHH
Q 038192 52 AVIICGETGCGKTTQVPQFL 71 (764)
Q Consensus 52 vviI~GeTGSGKTTqvPq~L 71 (764)
.+.|.|++||||||.+=...
T Consensus 4 ~v~lvG~nGaGKSTLln~L~ 23 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLF 23 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 36788999999999875543
No 363
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=71.15 E-value=1.2 Score=46.12 Aligned_cols=20 Identities=20% Similarity=0.411 Sum_probs=16.4
Q ss_pred CeEEEEecCCCCccccHHHH
Q 038192 51 SAVIICGETGCGKTTQVPQF 70 (764)
Q Consensus 51 ~vviI~GeTGSGKTTqvPq~ 70 (764)
.+|+|+|..||||||+.-.+
T Consensus 76 ~iI~I~G~~GSGKSTva~~L 95 (281)
T 2f6r_A 76 YVLGLTGISGSGKSSVAQRL 95 (281)
T ss_dssp EEEEEEECTTSCHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHH
Confidence 36889999999999976543
No 364
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=71.14 E-value=1.2 Score=45.14 Aligned_cols=17 Identities=24% Similarity=0.415 Sum_probs=14.6
Q ss_pred eEEEEecCCCCccccHH
Q 038192 52 AVIICGETGCGKTTQVP 68 (764)
Q Consensus 52 vviI~GeTGSGKTTqvP 68 (764)
+|.|+|..||||||.-=
T Consensus 24 iI~I~G~~GSGKST~a~ 40 (252)
T 1uj2_A 24 LIGVSGGTASGKSSVCA 40 (252)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 68899999999998643
No 365
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=71.14 E-value=1.3 Score=46.75 Aligned_cols=28 Identities=25% Similarity=0.366 Sum_probs=24.1
Q ss_pred HHcCCeEEEEecCCCCccccHHHHHHHh
Q 038192 47 VNDNSAVIICGETGCGKTTQVPQFLFEA 74 (764)
Q Consensus 47 l~~~~vviI~GeTGSGKTTqvPq~Lle~ 74 (764)
+..+.+++|.|++||||||..-|++...
T Consensus 104 l~~G~i~~i~G~~GsGKT~la~~la~~~ 131 (324)
T 2z43_A 104 IETRTMTEFFGEFGSGKTQLCHQLSVNV 131 (324)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCCcEEEEECCCCCCHhHHHHHHHHHH
Confidence 3457899999999999999999988764
No 366
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=70.76 E-value=1.4 Score=45.82 Aligned_cols=19 Identities=21% Similarity=0.466 Sum_probs=13.0
Q ss_pred CCeEEEEecCCCCccccHH
Q 038192 50 NSAVIICGETGCGKTTQVP 68 (764)
Q Consensus 50 ~~vviI~GeTGSGKTTqvP 68 (764)
..++.|+|+.||||||..=
T Consensus 5 ~~iIgItG~sGSGKSTva~ 23 (290)
T 1a7j_A 5 HPIISVTGSSGAGTSTVKH 23 (290)
T ss_dssp SCEEEEESCC---CCTHHH
T ss_pred ceEEEEECCCCCCHHHHHH
Confidence 4578999999999999654
No 367
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=70.66 E-value=1.1 Score=51.49 Aligned_cols=23 Identities=26% Similarity=0.498 Sum_probs=19.7
Q ss_pred HHcCCeEEEEecCCCCccccHHH
Q 038192 47 VNDNSAVIICGETGCGKTTQVPQ 69 (764)
Q Consensus 47 l~~~~vviI~GeTGSGKTTqvPq 69 (764)
+..++++.|.|++||||||.+=.
T Consensus 366 i~~G~~~~ivG~sGsGKSTll~~ 388 (582)
T 3b5x_A 366 IPQGKTVALVGRSGSGKSTIANL 388 (582)
T ss_pred ECCCCEEEEECCCCCCHHHHHHH
Confidence 46688999999999999998754
No 368
>1lkx_A Myosin IE heavy chain; myosin motor domain, lever ARM, converter domain, contractIle protein; HET: ADP; 3.00A {Dictyostelium discoideum} SCOP: c.37.1.9
Probab=70.61 E-value=2.1 Score=50.22 Aligned_cols=44 Identities=32% Similarity=0.560 Sum_probs=29.4
Q ss_pred cCCCc--hhhHHHHHHHH---HcCCeEEEEecCCCCcccc---HHHHHHHhc
Q 038192 32 KDLPI--VMMEQEIMEAV---NDNSAVIICGETGCGKTTQ---VPQFLFEAG 75 (764)
Q Consensus 32 ~~LPi--~~~~~~Il~~l---~~~~vviI~GeTGSGKTTq---vPq~Lle~~ 75 (764)
..+|- |..-+.....+ ..||.+||+||.|+|||.. |-|||..-.
T Consensus 71 ~~~pPHifaiA~~Ay~~m~~~~~nQsIiisGESGAGKTe~tK~i~~yla~~~ 122 (697)
T 1lkx_A 71 YEMPPHMYALANDAYRSMRQSQENQCVIISGESGAGKTEASKKIMQFLTFVS 122 (697)
T ss_dssp GGSCCCHHHHHHHHHHHHHHHCCCEEEEEECSTTSSHHHHHHHHHHHHHHHS
T ss_pred CCCCchHHHHHHHHHHHHHhcCCCcEEEecCCCCCCchhhHHHHHHHHHhhc
Confidence 34553 34444444333 4579999999999999964 777776543
No 369
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=70.54 E-value=1.2 Score=51.44 Aligned_cols=23 Identities=26% Similarity=0.502 Sum_probs=19.3
Q ss_pred HHcCCeEEEEecCCCCccccHHH
Q 038192 47 VNDNSAVIICGETGCGKTTQVPQ 69 (764)
Q Consensus 47 l~~~~vviI~GeTGSGKTTqvPq 69 (764)
+..++++.|.|++||||||.+-.
T Consensus 367 i~~G~~~~ivG~sGsGKSTLl~~ 389 (595)
T 2yl4_A 367 IPSGSVTALVGPSGSGKSTVLSL 389 (595)
T ss_dssp ECTTCEEEEECCTTSSSTHHHHH
T ss_pred EcCCCEEEEECCCCCCHHHHHHH
Confidence 35678999999999999998754
No 370
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=70.44 E-value=1.1 Score=51.63 Aligned_cols=23 Identities=26% Similarity=0.499 Sum_probs=19.3
Q ss_pred HHcCCeEEEEecCCCCccccHHH
Q 038192 47 VNDNSAVIICGETGCGKTTQVPQ 69 (764)
Q Consensus 47 l~~~~vviI~GeTGSGKTTqvPq 69 (764)
+..++++.|.|++||||||.+=.
T Consensus 366 i~~G~~~~ivG~sGsGKSTLl~~ 388 (582)
T 3b60_A 366 IPAGKTVALVGRSGSGKSTIASL 388 (582)
T ss_dssp ECTTCEEEEEECTTSSHHHHHHH
T ss_pred EcCCCEEEEECCCCCCHHHHHHH
Confidence 35678999999999999998754
No 371
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=70.16 E-value=1.2 Score=49.83 Aligned_cols=26 Identities=27% Similarity=0.330 Sum_probs=20.9
Q ss_pred HHHHHHcCCeEEEEecCCCCccccHH
Q 038192 43 IMEAVNDNSAVIICGETGCGKTTQVP 68 (764)
Q Consensus 43 Il~~l~~~~vviI~GeTGSGKTTqvP 68 (764)
+=-.+..+.++.|.|++||||||.+=
T Consensus 131 vsl~i~~Ge~v~IvGpnGsGKSTLlr 156 (460)
T 2npi_A 131 IRMSNFEGPRVVIVGGSQTGKTSLSR 156 (460)
T ss_dssp HHHHSSSCCCEEEEESTTSSHHHHHH
T ss_pred CceEeCCCCEEEEECCCCCCHHHHHH
Confidence 33445678999999999999999754
No 372
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=70.11 E-value=1.5 Score=50.04 Aligned_cols=42 Identities=19% Similarity=0.238 Sum_probs=27.3
Q ss_pred HHHhhhcCCCchhhHHHHHHH--------HHcCCeEEEEecCCCCccccH
Q 038192 26 EVENNRKDLPIVMMEQEIMEA--------VNDNSAVIICGETGCGKTTQV 67 (764)
Q Consensus 26 ~~~~~R~~LPi~~~~~~Il~~--------l~~~~vviI~GeTGSGKTTqv 67 (764)
++.+.-...|.+..+.++... +..+.+++|.|..||||||..
T Consensus 337 ~~Lr~G~~~p~~f~~peV~~vLR~~~~~~~~~G~iI~LiG~sGSGKSTLa 386 (552)
T 3cr8_A 337 RRMRAGLKIPEWYSFPEVLAELHRQTPPRERQGFTVFFTGLSGAGKSTLA 386 (552)
T ss_dssp HHHTTTCCCCTTTSCHHHHHHHHHHSCCGGGSCEEEEEEESSCHHHHHHH
T ss_pred HHHhcCCCCCccccccchhhhhhhhcccccccceEEEEECCCCChHHHHH
Confidence 344444455555444444443 345678999999999999854
No 373
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=70.10 E-value=1.3 Score=48.11 Aligned_cols=25 Identities=24% Similarity=0.329 Sum_probs=20.1
Q ss_pred HHcCCeEEEEecCCCCccccHHHHH
Q 038192 47 VNDNSAVIICGETGCGKTTQVPQFL 71 (764)
Q Consensus 47 l~~~~vviI~GeTGSGKTTqvPq~L 71 (764)
+..+.+++|.|++||||||.+-...
T Consensus 166 i~~~~~i~l~G~~GsGKSTl~~~l~ 190 (377)
T 1svm_A 166 IPKKRYWLFKGPIDSGKTTLAAALL 190 (377)
T ss_dssp CTTCCEEEEECSTTSSHHHHHHHHH
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHH
Confidence 3456899999999999999876443
No 374
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=69.87 E-value=1.1 Score=45.53 Aligned_cols=20 Identities=35% Similarity=0.484 Sum_probs=16.6
Q ss_pred CeEEEEecCCCCccccHHHH
Q 038192 51 SAVIICGETGCGKTTQVPQF 70 (764)
Q Consensus 51 ~vviI~GeTGSGKTTqvPq~ 70 (764)
.++++.|.+||||||..-..
T Consensus 33 ~~i~l~G~~GsGKSTla~~L 52 (253)
T 2p5t_B 33 IAILLGGQSGAGKTTIHRIK 52 (253)
T ss_dssp EEEEEESCGGGTTHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHH
Confidence 47899999999999976543
No 375
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=69.70 E-value=1.1 Score=51.61 Aligned_cols=22 Identities=45% Similarity=0.628 Sum_probs=18.7
Q ss_pred HHcCCeEEEEecCCCCccccHH
Q 038192 47 VNDNSAVIICGETGCGKTTQVP 68 (764)
Q Consensus 47 l~~~~vviI~GeTGSGKTTqvP 68 (764)
+..++.+.|.|++||||||.+-
T Consensus 366 i~~Ge~~~ivG~sGsGKSTll~ 387 (587)
T 3qf4_A 366 VKPGSLVAVLGETGSGKSTLMN 387 (587)
T ss_dssp ECTTCEEEEECSSSSSHHHHHH
T ss_pred EcCCCEEEEECCCCCCHHHHHH
Confidence 3557899999999999999763
No 376
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=69.61 E-value=2.4 Score=47.90 Aligned_cols=22 Identities=32% Similarity=0.412 Sum_probs=17.8
Q ss_pred CeEEEEecCCCCccccHHHHHH
Q 038192 51 SAVIICGETGCGKTTQVPQFLF 72 (764)
Q Consensus 51 ~vviI~GeTGSGKTTqvPq~Ll 72 (764)
+.++++|++||||||.+=.+.-
T Consensus 78 ~~lLL~GppGtGKTtla~~la~ 99 (516)
T 1sxj_A 78 RAAMLYGPPGIGKTTAAHLVAQ 99 (516)
T ss_dssp SEEEEECSTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 6899999999999987654433
No 377
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=69.61 E-value=1.3 Score=45.42 Aligned_cols=19 Identities=32% Similarity=0.559 Sum_probs=15.6
Q ss_pred eEEEEecCCCCccccHHHH
Q 038192 52 AVIICGETGCGKTTQVPQF 70 (764)
Q Consensus 52 vviI~GeTGSGKTTqvPq~ 70 (764)
-++|.|++||||||.+=.+
T Consensus 75 gvll~Gp~GtGKTtl~~~i 93 (278)
T 1iy2_A 75 GVLLVGPPGVGKTHLARAV 93 (278)
T ss_dssp EEEEECCTTSSHHHHHHHH
T ss_pred eEEEECCCcChHHHHHHHH
Confidence 3889999999999876443
No 378
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=69.47 E-value=1.5 Score=47.01 Aligned_cols=29 Identities=24% Similarity=0.267 Sum_probs=24.5
Q ss_pred HHcCCeEEEEecCCCCccccHHHHHHHhc
Q 038192 47 VNDNSAVIICGETGCGKTTQVPQFLFEAG 75 (764)
Q Consensus 47 l~~~~vviI~GeTGSGKTTqvPq~Lle~~ 75 (764)
+..+++++|.|++||||||..-|++.+..
T Consensus 58 l~~G~iv~I~G~pGsGKTtLal~la~~~~ 86 (349)
T 2zr9_A 58 LPRGRVIEIYGPESSGKTTVALHAVANAQ 86 (349)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 34579999999999999999888887654
No 379
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=69.45 E-value=2.3 Score=47.85 Aligned_cols=27 Identities=19% Similarity=0.199 Sum_probs=21.4
Q ss_pred HHHHHHHHHcCCeEEEEecCCCCcccc
Q 038192 40 EQEIMEAVNDNSAVIICGETGCGKTTQ 66 (764)
Q Consensus 40 ~~~Il~~l~~~~vviI~GeTGSGKTTq 66 (764)
.+.++.++..+..+++.|++|||||+.
T Consensus 31 i~~l~~al~~~~~VLL~GpPGtGKT~L 57 (500)
T 3nbx_X 31 IRLCLLAALSGESVFLLGPPGIAKSLI 57 (500)
T ss_dssp HHHHHHHHHHTCEEEEECCSSSSHHHH
T ss_pred HHHHHHHHhcCCeeEeecCchHHHHHH
Confidence 344666677778899999999999964
No 380
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=69.32 E-value=1.4 Score=48.96 Aligned_cols=36 Identities=11% Similarity=0.200 Sum_probs=28.6
Q ss_pred HHHHHHHHHcCCeEEEEecCCCCccccHHHHHHHhc
Q 038192 40 EQEIMEAVNDNSAVIICGETGCGKTTQVPQFLFEAG 75 (764)
Q Consensus 40 ~~~Il~~l~~~~vviI~GeTGSGKTTqvPq~Lle~~ 75 (764)
-+.++--+..+++++|.|++|+||||..-++.....
T Consensus 193 LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~ 228 (454)
T 2r6a_A 193 LDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVA 228 (454)
T ss_dssp HHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred HHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 344554466789999999999999999888877654
No 381
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=68.72 E-value=1.9 Score=45.06 Aligned_cols=30 Identities=20% Similarity=0.529 Sum_probs=22.7
Q ss_pred HHHHHHHHcCCeEEEEecCCCCccccHHHHH
Q 038192 41 QEIMEAVNDNSAVIICGETGCGKTTQVPQFL 71 (764)
Q Consensus 41 ~~Il~~l~~~~vviI~GeTGSGKTTqvPq~L 71 (764)
+++.+.+ .+.++.+.|++|+||||.+=..+
T Consensus 157 ~~L~~~l-~G~i~~l~G~sG~GKSTLln~l~ 186 (302)
T 2yv5_A 157 DELVDYL-EGFICILAGPSGVGKSSILSRLT 186 (302)
T ss_dssp HHHHHHT-TTCEEEEECSTTSSHHHHHHHHH
T ss_pred HHHHhhc-cCcEEEEECCCCCCHHHHHHHHH
Confidence 4444443 46788999999999999987655
No 382
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=68.65 E-value=1.3 Score=48.74 Aligned_cols=28 Identities=29% Similarity=0.527 Sum_probs=21.5
Q ss_pred HHHHHHcCCe--EEEEecCCCCccccHHHH
Q 038192 43 IMEAVNDNSA--VIICGETGCGKTTQVPQF 70 (764)
Q Consensus 43 Il~~l~~~~v--viI~GeTGSGKTTqvPq~ 70 (764)
+=-.+..+.+ +.|.|++||||||.+=..
T Consensus 33 vsl~i~~Gei~~vaLvG~nGaGKSTLln~L 62 (427)
T 2qag_B 33 VNKSVSQGFCFNILCVGETGLGKSTLMDTL 62 (427)
T ss_dssp HHHSCC-CCEEEEEEECSTTSSSHHHHHHH
T ss_pred CceEecCCCeeEEEEECCCCCCHHHHHHHH
Confidence 4445677888 999999999999987543
No 383
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=68.44 E-value=1.8 Score=39.37 Aligned_cols=20 Identities=30% Similarity=0.544 Sum_probs=17.2
Q ss_pred EEEEecCCCCccccHHHHHH
Q 038192 53 VIICGETGCGKTTQVPQFLF 72 (764)
Q Consensus 53 viI~GeTGSGKTTqvPq~Ll 72 (764)
+++.|.+|+||||.+=+++-
T Consensus 4 i~v~G~~~~GKSsli~~l~~ 23 (161)
T 2dyk_A 4 VVIVGRPNVGKSSLFNRLLK 23 (161)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhC
Confidence 68889999999998877763
No 384
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=68.43 E-value=2.7 Score=42.31 Aligned_cols=40 Identities=15% Similarity=0.095 Sum_probs=31.3
Q ss_pred cCCeEEEEecCCCCccccHHHHHHHhccCCCCCCCCCceEEEecccH
Q 038192 49 DNSAVIICGETGCGKTTQVPQFLFEAGFGSNRCSSRSGRIGVTQPRR 95 (764)
Q Consensus 49 ~~~vviI~GeTGSGKTTqvPq~Lle~~~~~~~~~~~~~~Ii~tQPRR 95 (764)
...+.+++|+-||||||.+-+.+....... .++++.||..
T Consensus 18 ~g~l~v~~G~MgsGKTT~lL~~~~r~~~~g-------~kvli~kp~~ 57 (234)
T 2orv_A 18 RGQIQVILGPMFSGKSTELMRRVRRFQIAQ-------YKCLVIKYAK 57 (234)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHHTTT-------CCEEEEEETT
T ss_pred ceEEEEEECCCCCcHHHHHHHHHHHHHHCC-------CeEEEEeecC
Confidence 467899999999999999999887654322 3688888863
No 385
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=68.33 E-value=2.4 Score=44.68 Aligned_cols=21 Identities=19% Similarity=0.422 Sum_probs=16.8
Q ss_pred CeEEEEecCCCCccccHHHHH
Q 038192 51 SAVIICGETGCGKTTQVPQFL 71 (764)
Q Consensus 51 ~vviI~GeTGSGKTTqvPq~L 71 (764)
..+++.|++|||||+..=.+.
T Consensus 46 ~~iLL~GppGtGKT~la~ala 66 (322)
T 1xwi_A 46 RGILLFGPPGTGKSYLAKAVA 66 (322)
T ss_dssp SEEEEESSSSSCHHHHHHHHH
T ss_pred ceEEEECCCCccHHHHHHHHH
Confidence 568999999999997665443
No 386
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=68.28 E-value=3.4 Score=40.40 Aligned_cols=24 Identities=25% Similarity=0.335 Sum_probs=20.5
Q ss_pred CeEEEEecCCCCccccHHHHHHHh
Q 038192 51 SAVIICGETGCGKTTQVPQFLFEA 74 (764)
Q Consensus 51 ~vviI~GeTGSGKTTqvPq~Lle~ 74 (764)
..++|.|..|+||||.+-+++...
T Consensus 39 ~~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 39 VAFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHh
Confidence 467888999999999998888654
No 387
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=68.26 E-value=1.4 Score=46.81 Aligned_cols=19 Identities=26% Similarity=0.559 Sum_probs=16.1
Q ss_pred CCeEEEEecCCCCccccHH
Q 038192 50 NSAVIICGETGCGKTTQVP 68 (764)
Q Consensus 50 ~~vviI~GeTGSGKTTqvP 68 (764)
..+.+|.|++||||||.+=
T Consensus 23 ~~~~~i~G~NGsGKS~lle 41 (339)
T 3qkt_A 23 EGINLIIGQNGSGKSSLLD 41 (339)
T ss_dssp SEEEEEECCTTSSHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHH
Confidence 3578999999999999754
No 388
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=68.22 E-value=1.5 Score=44.81 Aligned_cols=20 Identities=25% Similarity=0.421 Sum_probs=16.0
Q ss_pred CeEEEEecCCCCccccHHHH
Q 038192 51 SAVIICGETGCGKTTQVPQF 70 (764)
Q Consensus 51 ~vviI~GeTGSGKTTqvPq~ 70 (764)
..+++.|++|||||+..=.+
T Consensus 65 ~~vLl~G~~GtGKT~la~~i 84 (272)
T 1d2n_A 65 VSVLLEGPPHSGKTALAAKI 84 (272)
T ss_dssp EEEEEECSTTSSHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHH
Confidence 46899999999999865443
No 389
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=68.17 E-value=1.9 Score=39.14 Aligned_cols=20 Identities=25% Similarity=0.546 Sum_probs=17.2
Q ss_pred EEEEecCCCCccccHHHHHH
Q 038192 53 VIICGETGCGKTTQVPQFLF 72 (764)
Q Consensus 53 viI~GeTGSGKTTqvPq~Ll 72 (764)
+++.|.+|+||||.+=.++-
T Consensus 6 i~v~G~~~~GKssl~~~l~~ 25 (166)
T 2ce2_X 6 LVVVGAGGVGKSALTIQLIQ 25 (166)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 68889999999999877764
No 390
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=68.17 E-value=1.5 Score=46.20 Aligned_cols=27 Identities=26% Similarity=0.267 Sum_probs=23.5
Q ss_pred HcCCeEEEEecCCCCccccHHHHHHHh
Q 038192 48 NDNSAVIICGETGCGKTTQVPQFLFEA 74 (764)
Q Consensus 48 ~~~~vviI~GeTGSGKTTqvPq~Lle~ 74 (764)
..+.+++|.|++||||||..-|+..+.
T Consensus 96 ~~g~i~~i~G~~gsGKT~la~~la~~~ 122 (322)
T 2i1q_A 96 ESQSVTEFAGVFGSGKTQIMHQSCVNL 122 (322)
T ss_dssp ETTEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 446899999999999999999988764
No 391
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=67.97 E-value=1.5 Score=47.24 Aligned_cols=28 Identities=32% Similarity=0.313 Sum_probs=23.7
Q ss_pred HcCCeEEEEecCCCCccccHHHHHHHhc
Q 038192 48 NDNSAVIICGETGCGKTTQVPQFLFEAG 75 (764)
Q Consensus 48 ~~~~vviI~GeTGSGKTTqvPq~Lle~~ 75 (764)
..+.+++|.|++||||||..-|++....
T Consensus 59 ~~G~i~~I~GppGsGKSTLal~la~~~~ 86 (356)
T 3hr8_A 59 PRGRIVEIFGQESSGKTTLALHAIAEAQ 86 (356)
T ss_dssp ETTEEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3478999999999999999888887644
No 392
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=67.78 E-value=2 Score=45.44 Aligned_cols=23 Identities=17% Similarity=0.094 Sum_probs=18.2
Q ss_pred CCeEEEEecCCCCccccHHHHHH
Q 038192 50 NSAVIICGETGCGKTTQVPQFLF 72 (764)
Q Consensus 50 ~~vviI~GeTGSGKTTqvPq~Ll 72 (764)
...++|.|++|||||+.+=..+-
T Consensus 45 ~~~lli~GpPGTGKT~~v~~v~~ 67 (318)
T 3te6_A 45 NKLFYITNADDSTKFQLVNDVMD 67 (318)
T ss_dssp CCEEEEECCCSHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHH
Confidence 35789999999999987655443
No 393
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=67.67 E-value=1.5 Score=43.86 Aligned_cols=20 Identities=35% Similarity=0.370 Sum_probs=16.8
Q ss_pred CCeEEEEecCCCCccccHHH
Q 038192 50 NSAVIICGETGCGKTTQVPQ 69 (764)
Q Consensus 50 ~~vviI~GeTGSGKTTqvPq 69 (764)
+..+++.|..|||||||.-.
T Consensus 21 ~~~i~~~G~~g~GKst~~~~ 40 (223)
T 3ld9_A 21 SMFITFEGIDGSGKTTQSHL 40 (223)
T ss_dssp CEEEEEECSTTSSHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHH
Confidence 45788999999999999644
No 394
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=67.47 E-value=2.4 Score=46.93 Aligned_cols=37 Identities=19% Similarity=0.234 Sum_probs=29.0
Q ss_pred HHHHHHHHHcCCeEEEEecCCCCccccHHHHHHHhcc
Q 038192 40 EQEIMEAVNDNSAVIICGETGCGKTTQVPQFLFEAGF 76 (764)
Q Consensus 40 ~~~Il~~l~~~~vviI~GeTGSGKTTqvPq~Lle~~~ 76 (764)
-+.++.-+..+++++|.|++|+||||..-|+......
T Consensus 190 LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~ 226 (444)
T 2q6t_A 190 LDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNAAL 226 (444)
T ss_dssp HHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHHHH
T ss_pred hhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 3445544667899999999999999999888876553
No 395
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=67.31 E-value=1.6 Score=46.61 Aligned_cols=29 Identities=21% Similarity=0.178 Sum_probs=24.3
Q ss_pred HHcCCeEEEEecCCCCccccHHHHHHHhc
Q 038192 47 VNDNSAVIICGETGCGKTTQVPQFLFEAG 75 (764)
Q Consensus 47 l~~~~vviI~GeTGSGKTTqvPq~Lle~~ 75 (764)
+..+.+++|.|++||||||..-++.....
T Consensus 119 l~~G~i~~I~G~~GsGKTtla~~la~~~~ 147 (343)
T 1v5w_A 119 IESMAITEAFGEFRTGKTQLSHTLCVTAQ 147 (343)
T ss_dssp BCSSEEEEEECCTTCTHHHHHHHHHHHTT
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 34568999999999999999998887643
No 396
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=67.30 E-value=1.8 Score=43.77 Aligned_cols=21 Identities=24% Similarity=0.362 Sum_probs=16.6
Q ss_pred cCCeEEEEecCCCCccccHHH
Q 038192 49 DNSAVIICGETGCGKTTQVPQ 69 (764)
Q Consensus 49 ~~~vviI~GeTGSGKTTqvPq 69 (764)
..-++.|.|++||||||..-.
T Consensus 8 ~~~~i~i~G~~GsGKsTla~~ 28 (233)
T 3r20_A 8 GSLVVAVDGPAGTGKSSVSRG 28 (233)
T ss_dssp -CCEEEEECCTTSSHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHH
Confidence 445789999999999986543
No 397
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=67.29 E-value=2.1 Score=40.47 Aligned_cols=21 Identities=19% Similarity=0.403 Sum_probs=17.9
Q ss_pred eEEEEecCCCCccccHHHHHH
Q 038192 52 AVIICGETGCGKTTQVPQFLF 72 (764)
Q Consensus 52 vviI~GeTGSGKTTqvPq~Ll 72 (764)
-++|.|.+|+||||.+=.++-
T Consensus 25 ~i~v~G~~~~GKSsli~~l~~ 45 (195)
T 3pqc_A 25 EVAFVGRSNVGKSSLLNALFN 45 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 478889999999999887754
No 398
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=67.25 E-value=2.3 Score=41.70 Aligned_cols=23 Identities=26% Similarity=0.494 Sum_probs=19.1
Q ss_pred eEEEEecCCCCccccHHHHHHHh
Q 038192 52 AVIICGETGCGKTTQVPQFLFEA 74 (764)
Q Consensus 52 vviI~GeTGSGKTTqvPq~Lle~ 74 (764)
+++++|+.|||||+-.-.++++.
T Consensus 7 i~l~tG~pGsGKT~~a~~~~~~~ 29 (199)
T 2r2a_A 7 ICLITGTPGSGKTLKMVSMMAND 29 (199)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEEEeCCCCCHHHHHHHHHHHH
Confidence 67899999999999877766654
No 399
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=67.01 E-value=2.1 Score=40.40 Aligned_cols=21 Identities=24% Similarity=0.569 Sum_probs=18.0
Q ss_pred EEEEecCCCCccccHHHHHHHh
Q 038192 53 VIICGETGCGKTTQVPQFLFEA 74 (764)
Q Consensus 53 viI~GeTGSGKTTqvPq~Lle~ 74 (764)
|+|.|.+|+||||.+ +++...
T Consensus 17 i~vvG~~~~GKssL~-~~l~~~ 37 (198)
T 3t1o_A 17 IVYYGPGLSGKTTNL-KWIYSK 37 (198)
T ss_dssp EEEECSTTSSHHHHH-HHHHHT
T ss_pred EEEECCCCCCHHHHH-HHHHhh
Confidence 678899999999999 887653
No 400
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=66.96 E-value=2.4 Score=41.34 Aligned_cols=26 Identities=31% Similarity=0.363 Sum_probs=21.3
Q ss_pred cCCeEEEEecCCCCccccHHHHHHHh
Q 038192 49 DNSAVIICGETGCGKTTQVPQFLFEA 74 (764)
Q Consensus 49 ~~~vviI~GeTGSGKTTqvPq~Lle~ 74 (764)
.-.+++|.|.+|+||||.+-.++.+.
T Consensus 29 ~~~~i~i~G~~g~GKTTl~~~l~~~~ 54 (221)
T 2wsm_A 29 GTVAVNIMGAIGSGKTLLIERTIERI 54 (221)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHh
Confidence 34578899999999999988877653
No 401
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=66.92 E-value=1.4 Score=50.18 Aligned_cols=23 Identities=39% Similarity=0.524 Sum_probs=20.0
Q ss_pred HHcCCeEEEEecCCCCccccHHH
Q 038192 47 VNDNSAVIICGETGCGKTTQVPQ 69 (764)
Q Consensus 47 l~~~~vviI~GeTGSGKTTqvPq 69 (764)
+..+.++.|.|+.||||||.+=.
T Consensus 44 i~~Ge~~~LvG~NGaGKSTLlk~ 66 (538)
T 1yqt_A 44 VKEGMVVGIVGPNGTGKSTAVKI 66 (538)
T ss_dssp CCTTSEEEEECCTTSSHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHH
Confidence 56789999999999999998654
No 402
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=66.81 E-value=1.7 Score=44.90 Aligned_cols=19 Identities=26% Similarity=0.517 Sum_probs=15.3
Q ss_pred eEEEEecCCCCccccHHHH
Q 038192 52 AVIICGETGCGKTTQVPQF 70 (764)
Q Consensus 52 vviI~GeTGSGKTTqvPq~ 70 (764)
.+++.|++|+||||.+=.+
T Consensus 40 ~~ll~G~~G~GKt~la~~l 58 (319)
T 2chq_A 40 HLLFSGPPGTGKTATAIAL 58 (319)
T ss_dssp CEEEESSSSSSHHHHHHHH
T ss_pred eEEEECcCCcCHHHHHHHH
Confidence 4899999999999865433
No 403
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=66.74 E-value=1.4 Score=44.59 Aligned_cols=18 Identities=33% Similarity=0.571 Sum_probs=14.4
Q ss_pred CeEEEEecCCCCccccHH
Q 038192 51 SAVIICGETGCGKTTQVP 68 (764)
Q Consensus 51 ~vviI~GeTGSGKTTqvP 68 (764)
..+++.|++||||||..=
T Consensus 45 ~~vll~G~~GtGKT~la~ 62 (268)
T 2r62_A 45 KGVLLVGPPGTGKTLLAK 62 (268)
T ss_dssp SCCCCBCSSCSSHHHHHH
T ss_pred ceEEEECCCCCcHHHHHH
Confidence 447899999999996543
No 404
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=66.73 E-value=2.1 Score=39.24 Aligned_cols=20 Identities=15% Similarity=0.521 Sum_probs=17.1
Q ss_pred EEEEecCCCCccccHHHHHH
Q 038192 53 VIICGETGCGKTTQVPQFLF 72 (764)
Q Consensus 53 viI~GeTGSGKTTqvPq~Ll 72 (764)
+++.|.+|+||||.+=.++-
T Consensus 8 i~v~G~~~~GKssl~~~l~~ 27 (168)
T 1z2a_A 8 MVVVGNGAVGKSSMIQRYCK 27 (168)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHc
Confidence 67889999999998877664
No 405
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=66.54 E-value=1.6 Score=44.97 Aligned_cols=21 Identities=33% Similarity=0.683 Sum_probs=16.6
Q ss_pred CeEEEEecCCCCccccHHHHH
Q 038192 51 SAVIICGETGCGKTTQVPQFL 71 (764)
Q Consensus 51 ~vviI~GeTGSGKTTqvPq~L 71 (764)
.-+++.|++||||||.+=...
T Consensus 45 ~GvlL~Gp~GtGKTtLakala 65 (274)
T 2x8a_A 45 AGVLLAGPPGCGKTLLAKAVA 65 (274)
T ss_dssp SEEEEESSTTSCHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHH
Confidence 348999999999998765443
No 406
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=66.41 E-value=2.5 Score=44.46 Aligned_cols=20 Identities=25% Similarity=0.507 Sum_probs=16.1
Q ss_pred CeEEEEecCCCCccccHHHH
Q 038192 51 SAVIICGETGCGKTTQVPQF 70 (764)
Q Consensus 51 ~vviI~GeTGSGKTTqvPq~ 70 (764)
..+++.|++|||||+..=.+
T Consensus 52 ~~vLl~GppGtGKT~la~ai 71 (322)
T 3eie_A 52 SGILLYGPPGTGKSYLAKAV 71 (322)
T ss_dssp CEEEEECSSSSCHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHH
Confidence 46899999999999765443
No 407
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=66.26 E-value=3.2 Score=43.09 Aligned_cols=17 Identities=35% Similarity=0.380 Sum_probs=14.3
Q ss_pred CeEEEEecCCCCccccH
Q 038192 51 SAVIICGETGCGKTTQV 67 (764)
Q Consensus 51 ~vviI~GeTGSGKTTqv 67 (764)
..+++.|++|||||+..
T Consensus 37 ~~lLl~GppGtGKT~la 53 (293)
T 3t15_A 37 LILGIWGGKGQGKSFQC 53 (293)
T ss_dssp SEEEEEECTTSCHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 46889999999999654
No 408
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=66.18 E-value=2.4 Score=45.56 Aligned_cols=28 Identities=21% Similarity=0.420 Sum_probs=21.3
Q ss_pred HHHHHHHcCCeEEEEecCCCCccccHHHH
Q 038192 42 EIMEAVNDNSAVIICGETGCGKTTQVPQF 70 (764)
Q Consensus 42 ~Il~~l~~~~vviI~GeTGSGKTTqvPq~ 70 (764)
.+.. ...+.++.|.|++|+||||.+=..
T Consensus 208 ~L~~-~~~G~~~~lvG~sG~GKSTLln~L 235 (358)
T 2rcn_A 208 PLEE-ALTGRISIFAGQSGVGKSSLLNAL 235 (358)
T ss_dssp HHHH-HHTTSEEEEECCTTSSHHHHHHHH
T ss_pred HHHH-hcCCCEEEEECCCCccHHHHHHHH
Confidence 3444 346788999999999999988544
No 409
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=66.15 E-value=3 Score=40.83 Aligned_cols=38 Identities=16% Similarity=0.078 Sum_probs=28.7
Q ss_pred CCeEEEEecCCCCccccHHHHHHHhccCCCCCCCCCceEEEeccc
Q 038192 50 NSAVIICGETGCGKTTQVPQFLFEAGFGSNRCSSRSGRIGVTQPR 94 (764)
Q Consensus 50 ~~vviI~GeTGSGKTTqvPq~Lle~~~~~~~~~~~~~~Ii~tQPR 94 (764)
.+..+|.|+.||||||.+-|.+....... .++++..|.
T Consensus 20 g~l~fiyG~MgsGKTt~Ll~~i~n~~~~~-------~kvl~~kp~ 57 (195)
T 1w4r_A 20 GQIQVILGPMFSGKSTELMRRVRRFQIAQ-------YKCLVIKYA 57 (195)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHHHTT-------CCEEEEEET
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHHHHcC-------CeEEEEccc
Confidence 57899999999999999988876554332 356666676
No 410
>1w7j_A Myosin VA; motor protein, unconventional myosin, myosin V, chicken, molecular motor, ATPase, ELC, IQ motif, muscle protein, ATP-binding; HET: ADP; 2A {Gallus gallus} SCOP: b.34.3.1 c.37.1.9 PDB: 1w7i_A* 1oe9_A* 1w8j_A
Probab=65.93 E-value=2.9 Score=49.70 Aligned_cols=45 Identities=24% Similarity=0.502 Sum_probs=30.4
Q ss_pred hcCCC--chhhHHHHHHHH---HcCCeEEEEecCCCCcccc---HHHHHHHhc
Q 038192 31 RKDLP--IVMMEQEIMEAV---NDNSAVIICGETGCGKTTQ---VPQFLFEAG 75 (764)
Q Consensus 31 R~~LP--i~~~~~~Il~~l---~~~~vviI~GeTGSGKTTq---vPq~Lle~~ 75 (764)
+..+| ||..-+.....+ ..||.+||+||.|+|||.. |-|||..-+
T Consensus 132 ~~~~pPHifaiA~~Ay~~m~~~~~nQsIiisGESGAGKTe~tK~i~~yla~~~ 184 (795)
T 1w7j_A 132 MGDMDPHIFAVAEEAYKQMARDERNQSIIVSGESGAGKTVSAKYAMRYFATVS 184 (795)
T ss_dssp GGGSCCCHHHHHHHHHHHHHHHTCCEEEEEECSTTSSHHHHHHHHHHHHHHHT
T ss_pred ccCCCccHhHHHHHHHHHhHhcCCCeEEEEeCCCCCCcchHHHHHHHHHHhhc
Confidence 34566 444444444433 4579999999999999974 777776543
No 411
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=65.86 E-value=1.8 Score=46.14 Aligned_cols=40 Identities=23% Similarity=0.230 Sum_probs=30.4
Q ss_pred hhhHHHHHHHHHcCCeEEEEecCCCCccccHHHHHHHhcc
Q 038192 37 VMMEQEIMEAVNDNSAVIICGETGCGKTTQVPQFLFEAGF 76 (764)
Q Consensus 37 ~~~~~~Il~~l~~~~vviI~GeTGSGKTTqvPq~Lle~~~ 76 (764)
+..-+.++.-+..+++++|.|.+|+||||..-++......
T Consensus 33 ~~~LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a~ 72 (338)
T 4a1f_A 33 FVQLDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSALN 72 (338)
T ss_dssp CHHHHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHHH
T ss_pred ChHHHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 3344555555677899999999999999998888776443
No 412
>4anj_A Unconventional myosin-VI, green fluorescent prote; motor protein-metal-bindng protein complex, molecular motor, metal-binding protein, transition state; HET: CR2 ADP; 2.60A {Sus scrofa}
Probab=65.74 E-value=2.9 Score=51.18 Aligned_cols=44 Identities=25% Similarity=0.520 Sum_probs=30.8
Q ss_pred hcCCC--chhhHHHHHHHH---HcCCeEEEEecCCCCccc---cHHHHHHHh
Q 038192 31 RKDLP--IVMMEQEIMEAV---NDNSAVIICGETGCGKTT---QVPQFLFEA 74 (764)
Q Consensus 31 R~~LP--i~~~~~~Il~~l---~~~~vviI~GeTGSGKTT---qvPq~Lle~ 74 (764)
|..|| ||..-+.....+ ..||.+||+||+|||||. .|-|||...
T Consensus 120 ~~~lpPHIfaiA~~AY~~M~~~~~nQsIiiSGESGAGKTestK~im~yLa~~ 171 (1052)
T 4anj_A 120 LGTMPPHVFAIADKAFRDMKVLKLSQSIIVSGESGAGKTENTKFVLRYLTES 171 (1052)
T ss_dssp BTTBCSCHHHHHHHHHHHHHHHTCCEEEEEECSTTSSHHHHHHHHHHHHHHH
T ss_pred CCCCCCcHHHHHHHHHHHHHHhCCCceEEEecCCCCCHHHHHHHHHHHHHHh
Confidence 34565 455555555444 457899999999999996 477787654
No 413
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=65.59 E-value=2.4 Score=45.38 Aligned_cols=21 Identities=24% Similarity=0.464 Sum_probs=16.3
Q ss_pred CeEEEEecCCCCccccHHHHH
Q 038192 51 SAVIICGETGCGKTTQVPQFL 71 (764)
Q Consensus 51 ~vviI~GeTGSGKTTqvPq~L 71 (764)
..+++.|++|||||+..=.+.
T Consensus 85 ~~iLL~GppGtGKT~la~ala 105 (355)
T 2qp9_X 85 SGILLYGPPGTGKSYLAKAVA 105 (355)
T ss_dssp CCEEEECSTTSCHHHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHH
Confidence 458899999999998654443
No 414
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=65.36 E-value=2.3 Score=39.55 Aligned_cols=22 Identities=36% Similarity=0.721 Sum_probs=18.1
Q ss_pred eEEEEecCCCCccccHHHHHHH
Q 038192 52 AVIICGETGCGKTTQVPQFLFE 73 (764)
Q Consensus 52 vviI~GeTGSGKTTqvPq~Lle 73 (764)
-|+|.|.+|+||||.+=.++-.
T Consensus 10 ~i~v~G~~~~GKSsli~~l~~~ 31 (182)
T 1ky3_A 10 KVIILGDSGVGKTSLMHRYVND 31 (182)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 3688899999999998777643
No 415
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=65.32 E-value=2.8 Score=46.72 Aligned_cols=26 Identities=27% Similarity=0.563 Sum_probs=18.3
Q ss_pred HHHHHH--cCCeEEEEecCCCCccccHH
Q 038192 43 IMEAVN--DNSAVIICGETGCGKTTQVP 68 (764)
Q Consensus 43 Il~~l~--~~~vviI~GeTGSGKTTqvP 68 (764)
++..+. ....+++.|++|+|||+.+=
T Consensus 192 l~~~l~r~~~~~~LL~G~pG~GKT~la~ 219 (468)
T 3pxg_A 192 VIEVLSRRTKNNPVLIGEPGVGKTAIAE 219 (468)
T ss_dssp HHHHHHCSSSCEEEEESCTTTTTHHHHH
T ss_pred HHHHHhccCCCCeEEECCCCCCHHHHHH
Confidence 444442 33468899999999998653
No 416
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=65.22 E-value=1.4 Score=47.28 Aligned_cols=28 Identities=25% Similarity=0.357 Sum_probs=21.4
Q ss_pred HHHHHHc--CCeEEEEecCCCCccccHHHH
Q 038192 43 IMEAVND--NSAVIICGETGCGKTTQVPQF 70 (764)
Q Consensus 43 Il~~l~~--~~vviI~GeTGSGKTTqvPq~ 70 (764)
+-..+.. +..+.|.|++||||||.+=..
T Consensus 161 v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L 190 (365)
T 1lw7_A 161 IPKEARPFFAKTVAILGGESSGKSVLVNKL 190 (365)
T ss_dssp SCTTTGGGTCEEEEEECCTTSHHHHHHHHH
T ss_pred CCHHHHHhhhCeEEEECCCCCCHHHHHHHH
Confidence 3344566 778899999999999976543
No 417
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=65.18 E-value=4.2 Score=46.41 Aligned_cols=44 Identities=25% Similarity=0.456 Sum_probs=32.4
Q ss_pred cCCeEEEEecCCCCccccHHHHHHHhccCCCCCCCCCceEEEecccH
Q 038192 49 DNSAVIICGETGCGKTTQVPQFLFEAGFGSNRCSSRSGRIGVTQPRR 95 (764)
Q Consensus 49 ~~~vviI~GeTGSGKTTqvPq~Lle~~~~~~~~~~~~~~Ii~tQPRR 95 (764)
....++|.|.||||||+.+=-+|+.-.+... ....++++.-|..
T Consensus 213 k~pHlLIaG~TGSGKS~~L~tlI~sLl~~~s---P~ev~lilIDpKg 256 (574)
T 2iut_A 213 KMPHLLVAGTTGSGKSVGVNAMLLSILFKST---PSEARLIMIDPKM 256 (574)
T ss_dssp GSCCEEEECCTTSSHHHHHHHHHHHHHTTCC---TTTEEEEEECSSS
T ss_pred hCCeeEEECCCCCCHHHHHHHHHHHHHHhCC---CcceEEEEeCCCh
Confidence 3467899999999999988777776543321 1237888999986
No 418
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=65.18 E-value=2.3 Score=40.31 Aligned_cols=21 Identities=29% Similarity=0.482 Sum_probs=18.1
Q ss_pred eEEEEecCCCCccccHHHHHH
Q 038192 52 AVIICGETGCGKTTQVPQFLF 72 (764)
Q Consensus 52 vviI~GeTGSGKTTqvPq~Ll 72 (764)
.++|.|.+|+||||.+=.++-
T Consensus 50 ~i~vvG~~g~GKSsll~~l~~ 70 (193)
T 2ged_A 50 SIIIAGPQNSGKTSLLTLLTT 70 (193)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 688999999999999877764
No 419
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=65.17 E-value=1.8 Score=54.71 Aligned_cols=22 Identities=36% Similarity=0.762 Sum_probs=18.7
Q ss_pred HHcCCeEEEEecCCCCccccHH
Q 038192 47 VNDNSAVIICGETGCGKTTQVP 68 (764)
Q Consensus 47 l~~~~vviI~GeTGSGKTTqvP 68 (764)
|..++.|-|+|+|||||||.+-
T Consensus 1102 I~~Ge~vaIVG~SGsGKSTL~~ 1123 (1321)
T 4f4c_A 1102 VEPGQTLALVGPSGCGKSTVVA 1123 (1321)
T ss_dssp ECTTCEEEEECSTTSSTTSHHH
T ss_pred ECCCCEEEEECCCCChHHHHHH
Confidence 4567889999999999999764
No 420
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=65.13 E-value=2.4 Score=40.20 Aligned_cols=21 Identities=14% Similarity=0.513 Sum_probs=17.8
Q ss_pred CeEEEEecCCCCccccHHHHH
Q 038192 51 SAVIICGETGCGKTTQVPQFL 71 (764)
Q Consensus 51 ~vviI~GeTGSGKTTqvPq~L 71 (764)
-.++|.|.+|+||||.+=.++
T Consensus 24 ~~i~v~G~~~~GKSsli~~l~ 44 (195)
T 1svi_A 24 PEIALAGRSNVGKSSFINSLI 44 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHh
Confidence 357889999999999887765
No 421
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=65.12 E-value=2.1 Score=42.72 Aligned_cols=20 Identities=25% Similarity=0.313 Sum_probs=16.4
Q ss_pred CCeEEEEecCCCCccccHHH
Q 038192 50 NSAVIICGETGCGKTTQVPQ 69 (764)
Q Consensus 50 ~~vviI~GeTGSGKTTqvPq 69 (764)
..++.|.|..||||||..-.
T Consensus 16 ~~~i~i~G~~gsGKst~~~~ 35 (236)
T 1q3t_A 16 TIQIAIDGPASSGKSTVAKI 35 (236)
T ss_dssp CCEEEEECSSCSSHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHH
Confidence 45789999999999996543
No 422
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=65.11 E-value=0.7 Score=50.40 Aligned_cols=18 Identities=39% Similarity=0.529 Sum_probs=15.8
Q ss_pred eEEEEecCCCCccccHHH
Q 038192 52 AVIICGETGCGKTTQVPQ 69 (764)
Q Consensus 52 vviI~GeTGSGKTTqvPq 69 (764)
+++|+|++||||||.+=-
T Consensus 62 ~~~lvG~NGaGKStLl~a 79 (415)
T 4aby_A 62 FCAFTGETGAGKSIIVDA 79 (415)
T ss_dssp EEEEEESHHHHHHHHTHH
T ss_pred cEEEECCCCCCHHHHHHH
Confidence 899999999999998643
No 423
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=65.08 E-value=2.4 Score=38.72 Aligned_cols=21 Identities=38% Similarity=0.801 Sum_probs=17.6
Q ss_pred EEEEecCCCCccccHHHHHHH
Q 038192 53 VIICGETGCGKTTQVPQFLFE 73 (764)
Q Consensus 53 viI~GeTGSGKTTqvPq~Lle 73 (764)
+++.|.+|+||||.+=.++-.
T Consensus 7 i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 7 VIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 678899999999998777643
No 424
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=65.05 E-value=2.6 Score=43.94 Aligned_cols=28 Identities=21% Similarity=0.421 Sum_probs=20.5
Q ss_pred HHHHHHHHcCCeEEEEecCCCCccccHHH
Q 038192 41 QEIMEAVNDNSAVIICGETGCGKTTQVPQ 69 (764)
Q Consensus 41 ~~Il~~l~~~~vviI~GeTGSGKTTqvPq 69 (764)
+++.+.+ .+.++.+.|++||||||.+=.
T Consensus 161 ~~lf~~l-~geiv~l~G~sG~GKSTll~~ 188 (301)
T 1u0l_A 161 EELKEYL-KGKISTMAGLSGVGKSSLLNA 188 (301)
T ss_dssp HHHHHHH-SSSEEEEECSTTSSHHHHHHH
T ss_pred HHHHHHh-cCCeEEEECCCCCcHHHHHHH
Confidence 3344433 467889999999999997754
No 425
>4db1_A Myosin-7; S1DC, cardiac, beta isoform, MYH7, myhcb, MYHC-beta, contractIle protein; HET: ANP; 2.60A {Homo sapiens} PDB: 2w4a_M 2w4g_M 2w4h_M 2mys_A* 1m8q_A* 1mvw_A* 1o18_A* 1o19_A* 1o1a_A* 1o1b_A* 1o1c_A* 1o1d_A* 1o1e_A* 1o1f_A* 1o1g_A*
Probab=64.88 E-value=3.3 Score=49.09 Aligned_cols=44 Identities=30% Similarity=0.577 Sum_probs=30.8
Q ss_pred hcCCC--chhhHHHHHHHH---HcCCeEEEEecCCCCcccc---HHHHHHHh
Q 038192 31 RKDLP--IVMMEQEIMEAV---NDNSAVIICGETGCGKTTQ---VPQFLFEA 74 (764)
Q Consensus 31 R~~LP--i~~~~~~Il~~l---~~~~vviI~GeTGSGKTTq---vPq~Lle~ 74 (764)
|..+| ||..-+.....+ ..||.+||+||.|+|||.. |-|||..-
T Consensus 147 ~~~~pPHifaiA~~Ay~~m~~~~~nQsIiiSGESGAGKTe~tK~im~yla~v 198 (783)
T 4db1_A 147 RSEAPPHIFSISDNAYQYMLTDRENQSILITGESGAGKTVNTKRVIQYFAVI 198 (783)
T ss_dssp GGGSCCCHHHHHHHHHHHHHHHTCCEEEEEECSTTSSHHHHHHHHHHHHHHH
T ss_pred cCCCCchhhHHHHHHHHHHHhhCCCceEEEeCCCCCCCchHHHHHHHhhhhh
Confidence 34565 445555554444 4578999999999999974 77887754
No 426
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=64.77 E-value=2.4 Score=38.83 Aligned_cols=21 Identities=29% Similarity=0.602 Sum_probs=17.7
Q ss_pred EEEEecCCCCccccHHHHHHH
Q 038192 53 VIICGETGCGKTTQVPQFLFE 73 (764)
Q Consensus 53 viI~GeTGSGKTTqvPq~Lle 73 (764)
+++.|.+|+||||.+=+++-.
T Consensus 6 i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1ek0_A 6 LVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 678899999999998877643
No 427
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=64.63 E-value=2.5 Score=44.85 Aligned_cols=25 Identities=28% Similarity=0.323 Sum_probs=21.4
Q ss_pred cCCeEEEEecCCCCccccHHHHHHH
Q 038192 49 DNSAVIICGETGCGKTTQVPQFLFE 73 (764)
Q Consensus 49 ~~~vviI~GeTGSGKTTqvPq~Lle 73 (764)
.+.+++|.|++||||||..-|+..+
T Consensus 122 ~gsviLI~GpPGsGKTtLAlqlA~~ 146 (331)
T 2vhj_A 122 ASGMVIVTGKGNSGKTPLVHALGEA 146 (331)
T ss_dssp ESEEEEEECSCSSSHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHh
Confidence 4577899999999999988888765
No 428
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=64.53 E-value=2.5 Score=38.75 Aligned_cols=20 Identities=25% Similarity=0.677 Sum_probs=17.2
Q ss_pred EEEEecCCCCccccHHHHHH
Q 038192 53 VIICGETGCGKTTQVPQFLF 72 (764)
Q Consensus 53 viI~GeTGSGKTTqvPq~Ll 72 (764)
|+|.|.+|+||||.+=.++-
T Consensus 6 i~v~G~~~~GKssli~~l~~ 25 (170)
T 1g16_A 6 ILLIGDSGVGKSCLLVRFVE 25 (170)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHh
Confidence 67889999999998877763
No 429
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=64.27 E-value=3.3 Score=43.17 Aligned_cols=31 Identities=16% Similarity=0.279 Sum_probs=21.9
Q ss_pred HHHHHHHHHcC---CeEEEEecCCCCccccHHHH
Q 038192 40 EQEIMEAVNDN---SAVIICGETGCGKTTQVPQF 70 (764)
Q Consensus 40 ~~~Il~~l~~~---~vviI~GeTGSGKTTqvPq~ 70 (764)
.+.+.+++..+ .++++.|++|+||||.+=.+
T Consensus 35 ~~~l~~~l~~~~~~~~~L~~G~~G~GKT~la~~l 68 (324)
T 3u61_B 35 KETFKSITSKGKIPHIILHSPSPGTGKTTVAKAL 68 (324)
T ss_dssp HHHHHHHHHTTCCCSEEEECSSTTSSHHHHHHHH
T ss_pred HHHHHHHHHcCCCCeEEEeeCcCCCCHHHHHHHH
Confidence 34455666655 46788899999999876544
No 430
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=64.15 E-value=2.5 Score=38.48 Aligned_cols=20 Identities=35% Similarity=0.637 Sum_probs=17.2
Q ss_pred EEEEecCCCCccccHHHHHH
Q 038192 53 VIICGETGCGKTTQVPQFLF 72 (764)
Q Consensus 53 viI~GeTGSGKTTqvPq~Ll 72 (764)
|++.|.+|+||||.+=.++-
T Consensus 6 i~v~G~~~~GKSsli~~l~~ 25 (167)
T 1kao_A 6 VVVLGSGGVGKSALTVQFVT 25 (167)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHc
Confidence 68889999999999877664
No 431
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=64.14 E-value=2.5 Score=40.39 Aligned_cols=21 Identities=29% Similarity=0.661 Sum_probs=17.4
Q ss_pred eEEEEecCCCCccccHHHHHH
Q 038192 52 AVIICGETGCGKTTQVPQFLF 72 (764)
Q Consensus 52 vviI~GeTGSGKTTqvPq~Ll 72 (764)
.++|.|+.||||||.+=.++-
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~ 51 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTR 51 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHhc
Confidence 478899999999998877653
No 432
>2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA helicase, acetyltransferase, GCN5 acetyltransferase; HET: ACO ADP; 2.35A {Escherichia coli K12}
Probab=64.12 E-value=4.1 Score=47.35 Aligned_cols=58 Identities=19% Similarity=0.265 Sum_probs=44.2
Q ss_pred hhHHHHHHHHHc--CCeEEEEecCCCCccccHHHHHHHhccCCCCCCCCCceEEEecccHHHHHHHHHHH
Q 038192 38 MMEQEIMEAVND--NSAVIICGETGCGKTTQVPQFLFEAGFGSNRCSSRSGRIGVTQPRRVAVLATAKRV 105 (764)
Q Consensus 38 ~~~~~Il~~l~~--~~vviI~GeTGSGKTTqvPq~Lle~~~~~~~~~~~~~~Ii~tQPRRiaAisvA~RV 105 (764)
..+.++++.+.. ..+.+|+|.-|.||||.+-..+-... .+++||-|+..++..+.+.+
T Consensus 178 ~dQ~~al~~~~~~~~~~~vlta~RGRGKSa~lG~~~a~~~----------~~~~vtAP~~~a~~~l~~~~ 237 (671)
T 2zpa_A 178 PEQQQLLKQLMTMPPGVAAVTAARGRGKSALAGQLISRIA----------GRAIVTAPAKASTDVLAQFA 237 (671)
T ss_dssp HHHHHHHHHHTTCCSEEEEEEECTTSSHHHHHHHHHHHSS----------SCEEEECSSCCSCHHHHHHH
T ss_pred HHHHHHHHHHHHhhhCeEEEecCCCCCHHHHHHHHHHHHH----------hCcEEECCCHHHHHHHHHHh
Confidence 356667777766 56789999999999998887775432 24699999999888776654
No 433
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=64.05 E-value=2.5 Score=38.75 Aligned_cols=21 Identities=33% Similarity=0.613 Sum_probs=17.7
Q ss_pred EEEEecCCCCccccHHHHHHH
Q 038192 53 VIICGETGCGKTTQVPQFLFE 73 (764)
Q Consensus 53 viI~GeTGSGKTTqvPq~Lle 73 (764)
+++.|.+|+||||.+=.++-.
T Consensus 9 i~v~G~~~~GKSsli~~l~~~ 29 (170)
T 1z0j_A 9 VCLLGDTGVGKSSIMWRFVED 29 (170)
T ss_dssp EEEECCTTSSHHHHHHHHHHS
T ss_pred EEEECcCCCCHHHHHHHHHcC
Confidence 678899999999988877643
No 434
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=64.03 E-value=2.8 Score=45.32 Aligned_cols=21 Identities=24% Similarity=0.431 Sum_probs=16.9
Q ss_pred CCeEEEEecCCCCccccHHHH
Q 038192 50 NSAVIICGETGCGKTTQVPQF 70 (764)
Q Consensus 50 ~~vviI~GeTGSGKTTqvPq~ 70 (764)
...+++.|++|||||+.+=.+
T Consensus 148 ~~~vLL~GppGtGKT~la~ai 168 (389)
T 3vfd_A 148 ARGLLLFGPPGNGKTMLAKAV 168 (389)
T ss_dssp CSEEEEESSTTSCHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHH
Confidence 357999999999999866444
No 435
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=64.01 E-value=2.2 Score=45.90 Aligned_cols=29 Identities=31% Similarity=0.273 Sum_probs=24.5
Q ss_pred HHcCCeEEEEecCCCCccccHHHHHHHhc
Q 038192 47 VNDNSAVIICGETGCGKTTQVPQFLFEAG 75 (764)
Q Consensus 47 l~~~~vviI~GeTGSGKTTqvPq~Lle~~ 75 (764)
+..+++++|.|++||||||..-|++.+..
T Consensus 60 l~~G~ii~I~G~pGsGKTtLal~la~~~~ 88 (356)
T 1u94_A 60 LPMGRIVEIYGPESSGKTTLTLQVIAAAQ 88 (356)
T ss_dssp EETTSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 33578999999999999999988887654
No 436
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=64.01 E-value=2.5 Score=38.75 Aligned_cols=19 Identities=37% Similarity=0.695 Sum_probs=16.5
Q ss_pred EEEEecCCCCccccHHHHH
Q 038192 53 VIICGETGCGKTTQVPQFL 71 (764)
Q Consensus 53 viI~GeTGSGKTTqvPq~L 71 (764)
|++.|.+|+||||.+=+++
T Consensus 6 i~v~G~~~~GKssli~~l~ 24 (172)
T 2erx_A 6 VAVFGAGGVGKSSLVLRFV 24 (172)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 6788999999999887765
No 437
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=63.90 E-value=1.5 Score=48.51 Aligned_cols=46 Identities=17% Similarity=0.181 Sum_probs=29.8
Q ss_pred CeEEEEecCCCCccccHHHHHHHhccCCCCCCCCCceEEEecccHHHHHHH
Q 038192 51 SAVIICGETGCGKTTQVPQFLFEAGFGSNRCSSRSGRIGVTQPRRVAVLAT 101 (764)
Q Consensus 51 ~vviI~GeTGSGKTTqvPq~Lle~~~~~~~~~~~~~~Ii~tQPRRiaAisv 101 (764)
.+++++|.+|+||||.+-........... ...++-+-|.|.+|+..
T Consensus 100 ~vI~ivG~~GvGKTTla~~La~~l~~~G~-----kVllv~~D~~r~~a~~q 145 (432)
T 2v3c_C 100 NVILLVGIQGSGKTTTAAKLARYIQKRGL-----KPALIAADTYRPAAYEQ 145 (432)
T ss_dssp CCEEEECCSSSSTTHHHHHHHHHHHHHHC-----CEEEECCSCCCTTGGGS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCC-----eEEEEeccccCchHHHH
Confidence 37889999999999986665443221111 14566667777766543
No 438
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=63.68 E-value=4.7 Score=45.20 Aligned_cols=44 Identities=14% Similarity=0.102 Sum_probs=34.5
Q ss_pred CCCc--hhhHHHHHHHHHcCCeEEEEecCCCCccccHHHHHHHhcc
Q 038192 33 DLPI--VMMEQEIMEAVNDNSAVIICGETGCGKTTQVPQFLFEAGF 76 (764)
Q Consensus 33 ~LPi--~~~~~~Il~~l~~~~vviI~GeTGSGKTTqvPq~Lle~~~ 76 (764)
.+|. +..-++++.-+..+++++|.|++|+||||..-|+......
T Consensus 223 ~i~t~G~~~LD~~lgGl~~G~l~li~G~pG~GKT~lal~~a~~~a~ 268 (503)
T 1q57_A 223 GLLFSGCTGINDKTLGARGGEVIMVTSGSGMVMSTFVRQQALQWGT 268 (503)
T ss_dssp CSCCSSCTTHHHHHCCCCTTCEEEEEESSCHHHHHHHHHHHHHHTT
T ss_pred CccccchhhhhHhhcccCCCeEEEEeecCCCCchHHHHHHHHHHHH
Confidence 4555 4455666655677899999999999999999999887654
No 439
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=63.67 E-value=2.6 Score=38.53 Aligned_cols=20 Identities=30% Similarity=0.604 Sum_probs=17.1
Q ss_pred EEEEecCCCCccccHHHHHH
Q 038192 53 VIICGETGCGKTTQVPQFLF 72 (764)
Q Consensus 53 viI~GeTGSGKTTqvPq~Ll 72 (764)
+++.|.+|+||||.+=.++-
T Consensus 6 i~v~G~~~~GKssli~~l~~ 25 (167)
T 1c1y_A 6 LVVLGSGGVGKSALTVQFVQ 25 (167)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHc
Confidence 67889999999998877764
No 440
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=63.61 E-value=4.7 Score=45.57 Aligned_cols=29 Identities=34% Similarity=0.510 Sum_probs=24.2
Q ss_pred HHHcCCeEEEEecCCCCccccHHHHHHHh
Q 038192 46 AVNDNSAVIICGETGCGKTTQVPQFLFEA 74 (764)
Q Consensus 46 ~l~~~~vviI~GeTGSGKTTqvPq~Lle~ 74 (764)
.+..+.++.|.|++||||||.+-++....
T Consensus 277 ~i~~G~i~~i~G~~GsGKSTLl~~l~g~~ 305 (525)
T 1tf7_A 277 GFFKDSIILATGATGTGKTLLVSRFVENA 305 (525)
T ss_dssp SEESSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 35667899999999999999988887543
No 441
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=63.56 E-value=3.6 Score=44.11 Aligned_cols=18 Identities=39% Similarity=0.661 Sum_probs=14.8
Q ss_pred CCeEEEEecCCCCccccH
Q 038192 50 NSAVIICGETGCGKTTQV 67 (764)
Q Consensus 50 ~~vviI~GeTGSGKTTqv 67 (764)
...+++.|++||||||..
T Consensus 72 ~~~ill~Gp~GtGKT~la 89 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMA 89 (376)
T ss_dssp CCCEEEECCTTSSHHHHH
T ss_pred CCCEEEECCCCCCHHHHH
Confidence 346899999999999654
No 442
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=63.46 E-value=2.5 Score=40.53 Aligned_cols=21 Identities=29% Similarity=0.661 Sum_probs=17.3
Q ss_pred eEEEEecCCCCccccHHHHHH
Q 038192 52 AVIICGETGCGKTTQVPQFLF 72 (764)
Q Consensus 52 vviI~GeTGSGKTTqvPq~Ll 72 (764)
.++|.|+.|+||||.+=.++-
T Consensus 7 kv~lvG~~g~GKSTLl~~l~~ 27 (199)
T 2f9l_A 7 KVVLIGDSGVGKSNLLSRFTR 27 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHhc
Confidence 367889999999998877653
No 443
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=63.46 E-value=2.2 Score=47.32 Aligned_cols=37 Identities=14% Similarity=0.059 Sum_probs=28.6
Q ss_pred HHHHHHHHHcCCeEEEEecCCCCccccHHHHHHHhcc
Q 038192 40 EQEIMEAVNDNSAVIICGETGCGKTTQVPQFLFEAGF 76 (764)
Q Consensus 40 ~~~Il~~l~~~~vviI~GeTGSGKTTqvPq~Lle~~~ 76 (764)
-+.++.-+..+++++|.|.+|+||||..-|+....+.
T Consensus 187 LD~~lgGl~~G~liiIaG~pG~GKTtlal~ia~~~a~ 223 (444)
T 3bgw_A 187 LDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSD 223 (444)
T ss_dssp HHHHHSSBCSSCEEEEEECSSSSHHHHHHHHHHHHHH
T ss_pred HHhhcCCCCCCcEEEEEeCCCCChHHHHHHHHHHHHH
Confidence 3445444667899999999999999988888776543
No 444
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=63.40 E-value=1.7 Score=50.85 Aligned_cols=20 Identities=35% Similarity=0.474 Sum_probs=17.7
Q ss_pred HcCCeEEEEecCCCCccccH
Q 038192 48 NDNSAVIICGETGCGKTTQV 67 (764)
Q Consensus 48 ~~~~vviI~GeTGSGKTTqv 67 (764)
..+.++.|.|++||||||.+
T Consensus 346 ~~Ge~vaIiGpnGsGKSTLl 365 (670)
T 3ux8_A 346 PLGTFVAVTGVSGSGKSTLV 365 (670)
T ss_dssp ETTSEEEEECSTTSSHHHHH
T ss_pred cCCCEEEEEeeCCCCHHHHH
Confidence 45788999999999999986
No 445
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=63.17 E-value=2.7 Score=39.01 Aligned_cols=20 Identities=20% Similarity=0.395 Sum_probs=17.1
Q ss_pred eEEEEecCCCCccccHHHHH
Q 038192 52 AVIICGETGCGKTTQVPQFL 71 (764)
Q Consensus 52 vviI~GeTGSGKTTqvPq~L 71 (764)
.+++.|++|+||||.+=+++
T Consensus 5 ~v~lvG~~gvGKStL~~~l~ 24 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALT 24 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 47888999999999887764
No 446
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=63.13 E-value=2.7 Score=38.66 Aligned_cols=19 Identities=42% Similarity=0.707 Sum_probs=16.3
Q ss_pred EEEEecCCCCccccHHHHH
Q 038192 53 VIICGETGCGKTTQVPQFL 71 (764)
Q Consensus 53 viI~GeTGSGKTTqvPq~L 71 (764)
+++.|.+|+||||.+=+++
T Consensus 5 i~ivG~~~~GKSsli~~l~ 23 (169)
T 3q85_A 5 VMLVGESGVGKSTLAGTFG 23 (169)
T ss_dssp EEEECSTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 6788999999999887764
No 447
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=63.08 E-value=2.8 Score=39.42 Aligned_cols=20 Identities=25% Similarity=0.446 Sum_probs=17.2
Q ss_pred EEEEecCCCCccccHHHHHH
Q 038192 53 VIICGETGCGKTTQVPQFLF 72 (764)
Q Consensus 53 viI~GeTGSGKTTqvPq~Ll 72 (764)
|+|.|.+|+||||.+=+++-
T Consensus 4 i~v~G~~~~GKSsli~~l~~ 23 (190)
T 2cxx_A 4 IIFAGRSNVGKSTLIYRLTG 23 (190)
T ss_dssp EEEEEBTTSSHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHhC
Confidence 67889999999999887763
No 448
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=63.06 E-value=2.7 Score=38.64 Aligned_cols=20 Identities=35% Similarity=0.491 Sum_probs=17.1
Q ss_pred EEEEecCCCCccccHHHHHH
Q 038192 53 VIICGETGCGKTTQVPQFLF 72 (764)
Q Consensus 53 viI~GeTGSGKTTqvPq~Ll 72 (764)
++|.|.+|+||||.+=+++-
T Consensus 9 i~v~G~~~~GKssli~~l~~ 28 (170)
T 1z08_A 9 VVLLGEGCVGKTSLVLRYCE 28 (170)
T ss_dssp EEEECCTTSCHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHc
Confidence 67889999999999877664
No 449
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=62.75 E-value=2.2 Score=41.68 Aligned_cols=19 Identities=21% Similarity=0.328 Sum_probs=15.6
Q ss_pred CCeEEEEecCCCCccccHH
Q 038192 50 NSAVIICGETGCGKTTQVP 68 (764)
Q Consensus 50 ~~vviI~GeTGSGKTTqvP 68 (764)
..++.|+|..||||||..-
T Consensus 3 ~~~i~i~G~~gsGkst~~~ 21 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAK 21 (219)
T ss_dssp CCCEEEECCTTSSHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHH
Confidence 3478999999999998653
No 450
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=62.74 E-value=2.8 Score=38.77 Aligned_cols=21 Identities=29% Similarity=0.786 Sum_probs=17.6
Q ss_pred EEEEecCCCCccccHHHHHHH
Q 038192 53 VIICGETGCGKTTQVPQFLFE 73 (764)
Q Consensus 53 viI~GeTGSGKTTqvPq~Lle 73 (764)
++|.|.+|+||||.+=.++..
T Consensus 17 i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 17 LVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEESTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 677899999999998877643
No 451
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=62.48 E-value=3.1 Score=44.72 Aligned_cols=23 Identities=30% Similarity=0.343 Sum_probs=18.6
Q ss_pred CCeEEE--EecCCCCccccHHHHHH
Q 038192 50 NSAVII--CGETGCGKTTQVPQFLF 72 (764)
Q Consensus 50 ~~vviI--~GeTGSGKTTqvPq~Ll 72 (764)
..+++| .|++|+||||.+=.+.-
T Consensus 50 ~~~~li~i~G~~G~GKT~L~~~~~~ 74 (412)
T 1w5s_A 50 DVNMIYGSIGRVGIGKTTLAKFTVK 74 (412)
T ss_dssp CEEEEEECTTCCSSSHHHHHHHHHH
T ss_pred CCEEEEeCcCcCCCCHHHHHHHHHH
Confidence 457888 99999999998766553
No 452
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=62.46 E-value=2 Score=45.71 Aligned_cols=31 Identities=29% Similarity=0.461 Sum_probs=23.6
Q ss_pred HHHHHHH----HcCCeEEEEecCCCCccccHHHHH
Q 038192 41 QEIMEAV----NDNSAVIICGETGCGKTTQVPQFL 71 (764)
Q Consensus 41 ~~Il~~l----~~~~vviI~GeTGSGKTTqvPq~L 71 (764)
..+++.+ ..+.++.|.|++||||||.+-.++
T Consensus 42 ~~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~ 76 (337)
T 2qm8_A 42 RDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALG 76 (337)
T ss_dssp HHHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHH
T ss_pred HHHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHH
Confidence 3455554 356789999999999999887654
No 453
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=62.43 E-value=1.9 Score=48.41 Aligned_cols=20 Identities=30% Similarity=0.591 Sum_probs=17.3
Q ss_pred CeEEEEecCCCCccccHHHH
Q 038192 51 SAVIICGETGCGKTTQVPQF 70 (764)
Q Consensus 51 ~vviI~GeTGSGKTTqvPq~ 70 (764)
.++.|.|++||||||.+-..
T Consensus 30 e~~~liG~nGsGKSTLl~~l 49 (483)
T 3euj_A 30 LVTTLSGGNGAGKSTTMAGF 49 (483)
T ss_dssp SEEEEECCTTSSHHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHH
Confidence 78899999999999987544
No 454
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=62.41 E-value=2.8 Score=38.86 Aligned_cols=20 Identities=30% Similarity=0.693 Sum_probs=17.2
Q ss_pred EEEEecCCCCccccHHHHHH
Q 038192 53 VIICGETGCGKTTQVPQFLF 72 (764)
Q Consensus 53 viI~GeTGSGKTTqvPq~Ll 72 (764)
|+|.|.+|+||||.+=.++-
T Consensus 10 i~v~G~~~~GKSsli~~l~~ 29 (177)
T 1wms_A 10 VILLGDGGVGKSSLMNRYVT 29 (177)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHc
Confidence 68899999999998877764
No 455
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1
Probab=62.25 E-value=3.8 Score=50.13 Aligned_cols=45 Identities=27% Similarity=0.505 Sum_probs=29.9
Q ss_pred hcCCCc--hhhHHHHHHHH---HcCCeEEEEecCCCCcccc---HHHHHHHhc
Q 038192 31 RKDLPI--VMMEQEIMEAV---NDNSAVIICGETGCGKTTQ---VPQFLFEAG 75 (764)
Q Consensus 31 R~~LPi--~~~~~~Il~~l---~~~~vviI~GeTGSGKTTq---vPq~Lle~~ 75 (764)
|..+|- |..-+.....+ ..||.|||+||.|+|||.. |-|||..-+
T Consensus 148 ~~~~pPHifaiA~~Ay~~m~~~~~~QsIiisGESGAGKTe~~K~i~~yla~~~ 200 (1010)
T 1g8x_A 148 RNEVAPHIFAISDVAYRSMLDDRQNQSLLITGESGAGKTENTKKVIQYLASVA 200 (1010)
T ss_dssp TTTSCCCHHHHHHHHHHHHHHHTCCEEEEEEESTTSSHHHHHHHHHHHHHHHH
T ss_pred ccCCCccHHHHHHHHHHHHHhcCCCeEEEEeCCCCCCcchHHHHHHHHHHHhc
Confidence 345653 33334443333 4689999999999999974 777877544
No 456
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=62.19 E-value=1.9 Score=49.15 Aligned_cols=22 Identities=32% Similarity=0.395 Sum_probs=18.7
Q ss_pred HcCCeEEEEecCCCCccccHHH
Q 038192 48 NDNSAVIICGETGCGKTTQVPQ 69 (764)
Q Consensus 48 ~~~~vviI~GeTGSGKTTqvPq 69 (764)
..+.++.|.|+.||||||.+=.
T Consensus 292 ~~Gei~~i~G~nGsGKSTLl~~ 313 (538)
T 3ozx_A 292 KEGEIIGILGPNGIGKTTFARI 313 (538)
T ss_dssp ETTCEEEEECCTTSSHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHH
Confidence 4678999999999999997643
No 457
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=62.14 E-value=3.3 Score=43.43 Aligned_cols=17 Identities=41% Similarity=0.816 Sum_probs=14.0
Q ss_pred CeEEEEecCCCCccccH
Q 038192 51 SAVIICGETGCGKTTQV 67 (764)
Q Consensus 51 ~vviI~GeTGSGKTTqv 67 (764)
..+++.|++|||||+..
T Consensus 46 ~~vLl~G~~GtGKT~la 62 (350)
T 1g8p_A 46 GGVLVFGDRGTGKSTAV 62 (350)
T ss_dssp CCEEEECCGGGCTTHHH
T ss_pred ceEEEECCCCccHHHHH
Confidence 34899999999999644
No 458
>1kk8_A Myosin heavy chain, striated muscle; actin-detached, mechanics of motor, contractIle PROT; HET: ADP; 2.30A {Argopecten irradians} SCOP: b.34.3.1 c.37.1.9 PDB: 1kk7_A* 1qvi_A* 1s5g_A* 1sr6_A 1b7t_A* 1kqm_A* 1kwo_A* 1l2o_A* 1dfl_A* 2w4t_C 2w4v_C 2w4w_C 1dfk_A 2ec6_A 2otg_A* 2os8_A* 2ovk_A 2ekv_A 2ekw_A 2oy6_A* ...
Probab=62.13 E-value=3.4 Score=49.38 Aligned_cols=45 Identities=24% Similarity=0.533 Sum_probs=29.9
Q ss_pred hcCCCc--hhhHHHHHHHH---HcCCeEEEEecCCCCcccc---HHHHHHHhc
Q 038192 31 RKDLPI--VMMEQEIMEAV---NDNSAVIICGETGCGKTTQ---VPQFLFEAG 75 (764)
Q Consensus 31 R~~LPi--~~~~~~Il~~l---~~~~vviI~GeTGSGKTTq---vPq~Lle~~ 75 (764)
|..+|- |..-+.....+ ..||.+||+||.|+|||.. |-|||..-+
T Consensus 145 ~~~~pPHifaiA~~Ay~~m~~~~~nQsIiiSGESGAGKTe~tK~i~~yla~~~ 197 (837)
T 1kk8_A 145 KTEIPPHLFSVADNAYQNMVTDRENQSCLITGESGAGKTENTKKVIMYLAKVA 197 (837)
T ss_dssp GGGSCCCHHHHHHHHHHHHHHHTSEEEEEEECSTTSSHHHHHHHHHHHHHHHS
T ss_pred cCCCCCcHHHHHHHHHHHHHhcCCCcEEEEeCCCCCCchhhHHHHHHHHHHhc
Confidence 345553 34444443333 4578999999999999964 778887644
No 459
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=61.91 E-value=2.4 Score=40.13 Aligned_cols=19 Identities=47% Similarity=0.830 Sum_probs=16.3
Q ss_pred EEEEecCCCCccccHHHHH
Q 038192 53 VIICGETGCGKTTQVPQFL 71 (764)
Q Consensus 53 viI~GeTGSGKTTqvPq~L 71 (764)
++|.|++|+||||.+=.++
T Consensus 5 v~ivG~~gvGKStLl~~l~ 23 (184)
T 2zej_A 5 LMIVGNTGSGKTTLLQQLM 23 (184)
T ss_dssp EEEESCTTSSHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHh
Confidence 6788999999999887664
No 460
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=61.76 E-value=3.8 Score=45.29 Aligned_cols=20 Identities=20% Similarity=0.463 Sum_probs=16.4
Q ss_pred CeEEEEecCCCCccccHHHH
Q 038192 51 SAVIICGETGCGKTTQVPQF 70 (764)
Q Consensus 51 ~vviI~GeTGSGKTTqvPq~ 70 (764)
..+++.|++|||||+..=.+
T Consensus 168 ~~vLL~GppGtGKT~lA~ai 187 (444)
T 2zan_A 168 RGILLFGPPGTGKSYLAKAV 187 (444)
T ss_dssp SEEEEECSTTSSHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHH
Confidence 57899999999999766443
No 461
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=61.68 E-value=3 Score=38.19 Aligned_cols=20 Identities=30% Similarity=0.629 Sum_probs=17.2
Q ss_pred EEEEecCCCCccccHHHHHH
Q 038192 53 VIICGETGCGKTTQVPQFLF 72 (764)
Q Consensus 53 viI~GeTGSGKTTqvPq~Ll 72 (764)
+++.|.+|+||||.+=.++-
T Consensus 9 i~v~G~~~~GKssli~~l~~ 28 (170)
T 1r2q_A 9 LVLLGESAVGKSSLVLRFVK 28 (170)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHc
Confidence 67889999999998877664
No 462
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=61.63 E-value=2 Score=49.62 Aligned_cols=23 Identities=22% Similarity=0.349 Sum_probs=20.1
Q ss_pred HHcCCeEEEEecCCCCccccHHH
Q 038192 47 VNDNSAVIICGETGCGKTTQVPQ 69 (764)
Q Consensus 47 l~~~~vviI~GeTGSGKTTqvPq 69 (764)
+..++++.|.|+.||||||.+=.
T Consensus 100 ~~~Gei~~LvGpNGaGKSTLLki 122 (608)
T 3j16_B 100 PRPGQVLGLVGTNGIGKSTALKI 122 (608)
T ss_dssp CCTTSEEEEECCTTSSHHHHHHH
T ss_pred CCCCCEEEEECCCCChHHHHHHH
Confidence 46799999999999999998754
No 463
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=61.63 E-value=3.7 Score=45.33 Aligned_cols=18 Identities=33% Similarity=0.564 Sum_probs=15.3
Q ss_pred CeEEEEecCCCCccccHH
Q 038192 51 SAVIICGETGCGKTTQVP 68 (764)
Q Consensus 51 ~vviI~GeTGSGKTTqvP 68 (764)
..++|.|++||||||.+=
T Consensus 131 ~~lll~Gp~G~GKTtLa~ 148 (440)
T 2z4s_A 131 NPLFIYGGVGLGKTHLLQ 148 (440)
T ss_dssp CCEEEECSSSSSHHHHHH
T ss_pred CeEEEECCCCCCHHHHHH
Confidence 468999999999998653
No 464
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=61.59 E-value=3.1 Score=38.62 Aligned_cols=22 Identities=27% Similarity=0.557 Sum_probs=17.9
Q ss_pred eEEEEecCCCCccccHHHHHHH
Q 038192 52 AVIICGETGCGKTTQVPQFLFE 73 (764)
Q Consensus 52 vviI~GeTGSGKTTqvPq~Lle 73 (764)
-++|.|.+|+||||.+=.++-.
T Consensus 11 ~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 11 KLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 3788899999999988776643
No 465
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=61.50 E-value=2.9 Score=38.75 Aligned_cols=23 Identities=30% Similarity=0.351 Sum_probs=18.8
Q ss_pred CCeEEEEecCCCCccccHHHHHH
Q 038192 50 NSAVIICGETGCGKTTQVPQFLF 72 (764)
Q Consensus 50 ~~vviI~GeTGSGKTTqvPq~Ll 72 (764)
...|++.|.+|+||||.+=.++-
T Consensus 8 ~~~i~v~G~~~~GKssl~~~l~~ 30 (178)
T 2lkc_A 8 PPVVTIMGHVDHGKTTLLDAIRH 30 (178)
T ss_dssp CCEEEEESCTTTTHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 34578899999999998877653
No 466
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=61.27 E-value=3.1 Score=39.00 Aligned_cols=20 Identities=25% Similarity=0.522 Sum_probs=17.0
Q ss_pred eEEEEecCCCCccccHHHHH
Q 038192 52 AVIICGETGCGKTTQVPQFL 71 (764)
Q Consensus 52 vviI~GeTGSGKTTqvPq~L 71 (764)
-++|.|.+|+||||.+-.+.
T Consensus 6 ki~ivG~~g~GKStLl~~l~ 25 (172)
T 2gj8_A 6 KVVIAGRPNAGKSSLLNALA 25 (172)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 47888999999999887764
No 467
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=61.20 E-value=2.1 Score=49.52 Aligned_cols=24 Identities=46% Similarity=0.533 Sum_probs=20.3
Q ss_pred HHHcCCeEEEEecCCCCccccHHH
Q 038192 46 AVNDNSAVIICGETGCGKTTQVPQ 69 (764)
Q Consensus 46 ~l~~~~vviI~GeTGSGKTTqvPq 69 (764)
.+..+.++.|.|+.||||||.+=.
T Consensus 113 ~i~~Ge~~~LiG~NGsGKSTLlki 136 (607)
T 3bk7_A 113 IVKDGMVVGIVGPNGTGKTTAVKI 136 (607)
T ss_dssp CCCTTSEEEEECCTTSSHHHHHHH
T ss_pred CCCCCCEEEEECCCCChHHHHHHH
Confidence 357789999999999999997653
No 468
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=61.18 E-value=3 Score=39.20 Aligned_cols=20 Identities=20% Similarity=0.395 Sum_probs=17.3
Q ss_pred eEEEEecCCCCccccHHHHH
Q 038192 52 AVIICGETGCGKTTQVPQFL 71 (764)
Q Consensus 52 vviI~GeTGSGKTTqvPq~L 71 (764)
.+++.|++|+||||.+=+++
T Consensus 9 ~i~lvG~~gvGKStL~~~l~ 28 (188)
T 2wjg_A 9 EIALIGNPNVGKSTIFNALT 28 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 47889999999999988765
No 469
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=61.13 E-value=3.1 Score=38.44 Aligned_cols=19 Identities=37% Similarity=0.714 Sum_probs=16.3
Q ss_pred EEEEecCCCCccccHHHHH
Q 038192 53 VIICGETGCGKTTQVPQFL 71 (764)
Q Consensus 53 viI~GeTGSGKTTqvPq~L 71 (764)
|+|.|.+|+||||.+=+++
T Consensus 7 i~i~G~~~vGKSsl~~~l~ 25 (175)
T 2nzj_A 7 VVLLGDPGVGKTSLASLFA 25 (175)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCccHHHHHHHHh
Confidence 6888999999999886654
No 470
>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A {Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A*
Probab=61.05 E-value=4 Score=49.89 Aligned_cols=45 Identities=24% Similarity=0.529 Sum_probs=30.0
Q ss_pred hcCCCc--hhhHHHHHHHH---HcCCeEEEEecCCCCcccc---HHHHHHHhc
Q 038192 31 RKDLPI--VMMEQEIMEAV---NDNSAVIICGETGCGKTTQ---VPQFLFEAG 75 (764)
Q Consensus 31 R~~LPi--~~~~~~Il~~l---~~~~vviI~GeTGSGKTTq---vPq~Lle~~ 75 (764)
|..+|- |..-+.....+ ..||.|||+||.|+|||.. |-|||..-+
T Consensus 122 ~~~~pPHifaiA~~Ay~~m~~~~~~QsIiisGESGAGKTe~~K~i~~yla~~~ 174 (995)
T 2ycu_A 122 RHEVPPHVYAVTEGAYRSMLQDREDQSILCTGESGAGKTENTKKVIQYLAHVA 174 (995)
T ss_dssp GGGSCCCHHHHHHHHHHHHHHHCCCEEEEEECBTTSSHHHHHHHHHHHHHHHS
T ss_pred cCCCCchHHHHhHHHHHHHHhcCCCcEEEecCCCCCCchhhHHHHHHHHHHhc
Confidence 345543 34444443333 4579999999999999964 778887644
No 471
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=61.02 E-value=3.6 Score=43.60 Aligned_cols=24 Identities=13% Similarity=0.022 Sum_probs=21.5
Q ss_pred eEEEEecCCCCccccHHHHHHHhc
Q 038192 52 AVIICGETGCGKTTQVPQFLFEAG 75 (764)
Q Consensus 52 vviI~GeTGSGKTTqvPq~Lle~~ 75 (764)
++.|.|++||||||..-|++.+..
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~~~ 53 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSSYM 53 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHH
Confidence 789999999999999999988754
No 472
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=60.95 E-value=3.1 Score=38.51 Aligned_cols=22 Identities=36% Similarity=0.551 Sum_probs=18.1
Q ss_pred eEEEEecCCCCccccHHHHHHH
Q 038192 52 AVIICGETGCGKTTQVPQFLFE 73 (764)
Q Consensus 52 vviI~GeTGSGKTTqvPq~Lle 73 (764)
-++|.|.+|+||||.+=+++-.
T Consensus 17 ~i~v~G~~~~GKSsli~~l~~~ 38 (179)
T 1z0f_A 17 KYIIIGDMGVGKSCLLHQFTEK 38 (179)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 3788899999999988877643
No 473
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=60.89 E-value=2.6 Score=46.19 Aligned_cols=21 Identities=29% Similarity=0.488 Sum_probs=17.3
Q ss_pred CCeEEEEecCCCCccccHHHH
Q 038192 50 NSAVIICGETGCGKTTQVPQF 70 (764)
Q Consensus 50 ~~vviI~GeTGSGKTTqvPq~ 70 (764)
..+++++|..||||||..-++
T Consensus 258 ~~lIil~G~pGSGKSTla~~L 278 (416)
T 3zvl_A 258 PEVVVAVGFPGAGKSTFIQEH 278 (416)
T ss_dssp CCEEEEESCTTSSHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHH
Confidence 468999999999999876543
No 474
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=60.60 E-value=3.1 Score=38.88 Aligned_cols=20 Identities=30% Similarity=0.660 Sum_probs=17.3
Q ss_pred EEEEecCCCCccccHHHHHH
Q 038192 53 VIICGETGCGKTTQVPQFLF 72 (764)
Q Consensus 53 viI~GeTGSGKTTqvPq~Ll 72 (764)
|+|.|.+|+||||.+=.++-
T Consensus 21 i~v~G~~~~GKSsl~~~l~~ 40 (183)
T 3kkq_A 21 LVVVGDGGVGKSALTIQFFQ 40 (183)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 68899999999999887763
No 475
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=60.33 E-value=3.2 Score=38.63 Aligned_cols=20 Identities=30% Similarity=0.698 Sum_probs=17.3
Q ss_pred EEEEecCCCCccccHHHHHH
Q 038192 53 VIICGETGCGKTTQVPQFLF 72 (764)
Q Consensus 53 viI~GeTGSGKTTqvPq~Ll 72 (764)
|+|.|.+|+||||.+=+++-
T Consensus 15 i~v~G~~~~GKSsli~~l~~ 34 (181)
T 2efe_B 15 LVLLGDVGAGKSSLVLRFVK 34 (181)
T ss_dssp EEEECCTTSCHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHc
Confidence 68889999999999877764
No 476
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=60.31 E-value=3.2 Score=39.17 Aligned_cols=20 Identities=25% Similarity=0.546 Sum_probs=17.3
Q ss_pred EEEEecCCCCccccHHHHHH
Q 038192 53 VIICGETGCGKTTQVPQFLF 72 (764)
Q Consensus 53 viI~GeTGSGKTTqvPq~Ll 72 (764)
|++.|.+|+||||.+=.++-
T Consensus 24 i~vvG~~~~GKSsli~~l~~ 43 (190)
T 3con_A 24 LVVVGAGGVGKSALTIQLIQ 43 (190)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHc
Confidence 77889999999999887764
No 477
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=60.07 E-value=2.1 Score=50.04 Aligned_cols=20 Identities=25% Similarity=0.504 Sum_probs=18.0
Q ss_pred HcCCeEEEEecCCCCccccH
Q 038192 48 NDNSAVIICGETGCGKTTQV 67 (764)
Q Consensus 48 ~~~~vviI~GeTGSGKTTqv 67 (764)
..+.++.|.|+.||||||.+
T Consensus 42 ~~Ge~~~liGpNGaGKSTLl 61 (670)
T 3ux8_A 42 PRGKLVVLTGLSGSGKSSLA 61 (670)
T ss_dssp ETTSEEEEECSTTSSHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHh
Confidence 56789999999999999995
No 478
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=60.03 E-value=3.2 Score=40.26 Aligned_cols=23 Identities=26% Similarity=0.485 Sum_probs=19.1
Q ss_pred CeEEEEecCCCCccccHHHHHHH
Q 038192 51 SAVIICGETGCGKTTQVPQFLFE 73 (764)
Q Consensus 51 ~vviI~GeTGSGKTTqvPq~Lle 73 (764)
-.+++.|++|+||||.+=+++-.
T Consensus 13 ~~i~~~G~~g~GKTsl~~~l~~~ 35 (218)
T 1nrj_B 13 PSIIIAGPQNSGKTSLLTLLTTD 35 (218)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 35789999999999998877653
No 479
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=59.95 E-value=2.6 Score=39.39 Aligned_cols=19 Identities=37% Similarity=0.593 Sum_probs=15.7
Q ss_pred eEEEEecCCCCccccHHHH
Q 038192 52 AVIICGETGCGKTTQVPQF 70 (764)
Q Consensus 52 vviI~GeTGSGKTTqvPq~ 70 (764)
-|++.|++|+||||.+=.+
T Consensus 20 ~i~v~G~~~~GKssli~~l 38 (183)
T 1moz_A 20 RILILGLDGAGKTTILYRL 38 (183)
T ss_dssp EEEEEEETTSSHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 4788999999999987543
No 480
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=59.94 E-value=3.4 Score=38.71 Aligned_cols=22 Identities=27% Similarity=0.582 Sum_probs=18.1
Q ss_pred eEEEEecCCCCccccHHHHHHH
Q 038192 52 AVIICGETGCGKTTQVPQFLFE 73 (764)
Q Consensus 52 vviI~GeTGSGKTTqvPq~Lle 73 (764)
-++|.|.+|+||||.+=+++-.
T Consensus 12 ki~v~G~~~~GKSsli~~l~~~ 33 (186)
T 2bme_A 12 KFLVIGNAGTGKSCLLHQFIEK 33 (186)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 3788899999999988877643
No 481
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=59.82 E-value=2.6 Score=44.52 Aligned_cols=16 Identities=31% Similarity=0.648 Sum_probs=14.2
Q ss_pred EEEEecCCCCccccHH
Q 038192 53 VIICGETGCGKTTQVP 68 (764)
Q Consensus 53 viI~GeTGSGKTTqvP 68 (764)
+++.|++||||||.+=
T Consensus 39 ~ll~Gp~G~GKTtl~~ 54 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCM 54 (354)
T ss_dssp EEEECSTTSSHHHHHH
T ss_pred EEEECCCCCCHHHHHH
Confidence 8999999999998654
No 482
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=59.75 E-value=8.9 Score=40.82 Aligned_cols=33 Identities=24% Similarity=0.364 Sum_probs=23.8
Q ss_pred HHHHHHHH----cCCeEEEEecCCCCccccHHHHHHH
Q 038192 41 QEIMEAVN----DNSAVIICGETGCGKTTQVPQFLFE 73 (764)
Q Consensus 41 ~~Il~~l~----~~~vviI~GeTGSGKTTqvPq~Lle 73 (764)
.+++..+. +..+++|+|.+|+||||.+-.+...
T Consensus 66 ~~~~~~~~~~~~~~~~I~i~G~~G~GKSTl~~~L~~~ 102 (355)
T 3p32_A 66 QQLLLRLLPDSGNAHRVGITGVPGVGKSTAIEALGMH 102 (355)
T ss_dssp HHHHHHHGGGCCCSEEEEEECCTTSSHHHHHHHHHHH
T ss_pred HHHHHHhHhhcCCceEEEEECCCCCCHHHHHHHHHHH
Confidence 34555554 2237889999999999998877654
No 483
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=59.25 E-value=3 Score=45.79 Aligned_cols=22 Identities=23% Similarity=0.442 Sum_probs=18.2
Q ss_pred cCCeEEEEecCCCCccccHHHH
Q 038192 49 DNSAVIICGETGCGKTTQVPQF 70 (764)
Q Consensus 49 ~~~vviI~GeTGSGKTTqvPq~ 70 (764)
.+.+++|.|++||||||.+=-+
T Consensus 25 ~~~~~~i~G~nG~GKstll~ai 46 (430)
T 1w1w_A 25 ESNFTSIIGPNGSGKSNMMDAI 46 (430)
T ss_dssp TCSEEEEECSTTSSHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHH
Confidence 4678999999999999975543
No 484
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=59.21 E-value=3.5 Score=37.65 Aligned_cols=21 Identities=24% Similarity=0.436 Sum_probs=17.8
Q ss_pred EEEEecCCCCccccHHHHHHH
Q 038192 53 VIICGETGCGKTTQVPQFLFE 73 (764)
Q Consensus 53 viI~GeTGSGKTTqvPq~Lle 73 (764)
+++.|.+|+||||.+=+++-.
T Consensus 3 i~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 3 ILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 678899999999998877654
No 485
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=59.20 E-value=3.4 Score=38.48 Aligned_cols=21 Identities=38% Similarity=0.801 Sum_probs=17.6
Q ss_pred EEEEecCCCCccccHHHHHHH
Q 038192 53 VIICGETGCGKTTQVPQFLFE 73 (764)
Q Consensus 53 viI~GeTGSGKTTqvPq~Lle 73 (764)
|+|.|.+|+||||.+=.++-.
T Consensus 21 i~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 21 VIMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHhhC
Confidence 788899999999988776643
No 486
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=59.20 E-value=3.5 Score=37.89 Aligned_cols=21 Identities=33% Similarity=0.513 Sum_probs=17.6
Q ss_pred eEEEEecCCCCccccHHHHHH
Q 038192 52 AVIICGETGCGKTTQVPQFLF 72 (764)
Q Consensus 52 vviI~GeTGSGKTTqvPq~Ll 72 (764)
-+++.|.+|+||||.+=+++-
T Consensus 9 ~i~v~G~~~~GKssl~~~l~~ 29 (171)
T 1upt_A 9 RILILGLDGAGKTTILYRLQV 29 (171)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 478899999999998877653
No 487
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=58.74 E-value=3.5 Score=39.33 Aligned_cols=21 Identities=38% Similarity=0.801 Sum_probs=17.8
Q ss_pred EEEEecCCCCccccHHHHHHH
Q 038192 53 VIICGETGCGKTTQVPQFLFE 73 (764)
Q Consensus 53 viI~GeTGSGKTTqvPq~Lle 73 (764)
|+|.|.+|+||||.+=.++..
T Consensus 17 i~v~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 17 VIMVGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 788899999999998777643
No 488
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=58.67 E-value=2.9 Score=40.38 Aligned_cols=21 Identities=19% Similarity=0.409 Sum_probs=17.5
Q ss_pred eEEEEecCCCCccccHHHHHH
Q 038192 52 AVIICGETGCGKTTQVPQFLF 72 (764)
Q Consensus 52 vviI~GeTGSGKTTqvPq~Ll 72 (764)
-|++.|.+|+||||.+-+++-
T Consensus 32 ki~vvG~~~~GKSsLi~~l~~ 52 (204)
T 4gzl_A 32 KCVVVGDGAVGKTCLLISYTT 52 (204)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHh
Confidence 367889999999999877664
No 489
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=58.66 E-value=4.6 Score=49.78 Aligned_cols=43 Identities=26% Similarity=0.535 Sum_probs=29.2
Q ss_pred cCCC--chhhHHHHHHHH---HcCCeEEEEecCCCCcccc---HHHHHHHh
Q 038192 32 KDLP--IVMMEQEIMEAV---NDNSAVIICGETGCGKTTQ---VPQFLFEA 74 (764)
Q Consensus 32 ~~LP--i~~~~~~Il~~l---~~~~vviI~GeTGSGKTTq---vPq~Lle~ 74 (764)
..+| ||..-+.....+ ..||.+||+||.|+|||.. |-|||..-
T Consensus 133 ~~~pPHifaiA~~Ay~~m~~~~~~QsIiisGESGAGKTe~~K~i~~yla~~ 183 (1080)
T 2dfs_A 133 GDMDPHIFAVAEEAYKQMARDERNQSIIVSGESGAGKTVSAKYAMRYFATV 183 (1080)
T ss_dssp GGSCCCHHHHHHHHHHHHHHHTCCEEEEEECSTTSSHHHHHHHHHHHHHHT
T ss_pred CCCCCcHHHHHHHHHHHHHhcCCCcEEEEcCCCCCCccchHHHHHHHHHhh
Confidence 4455 344444444433 4579999999999999974 77777653
No 490
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=58.49 E-value=3.7 Score=38.29 Aligned_cols=21 Identities=29% Similarity=0.393 Sum_probs=17.9
Q ss_pred eEEEEecCCCCccccHHHHHH
Q 038192 52 AVIICGETGCGKTTQVPQFLF 72 (764)
Q Consensus 52 vviI~GeTGSGKTTqvPq~Ll 72 (764)
-|++.|.+|+||||.+=.++-
T Consensus 8 ki~~~G~~~~GKSsli~~l~~ 28 (181)
T 3t5g_A 8 KIAILGYRSVGKSSLTIQFVE 28 (181)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHc
Confidence 367889999999999888764
No 491
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=58.41 E-value=2.8 Score=38.88 Aligned_cols=19 Identities=32% Similarity=0.753 Sum_probs=16.1
Q ss_pred EEEEecCCCCccccHHHHH
Q 038192 53 VIICGETGCGKTTQVPQFL 71 (764)
Q Consensus 53 viI~GeTGSGKTTqvPq~L 71 (764)
|+|.|.+|+||||.+=.++
T Consensus 12 i~v~G~~~~GKssl~~~l~ 30 (181)
T 3tw8_B 12 LLIIGDSGVGKSSLLLRFA 30 (181)
T ss_dssp EEEECCTTSCHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHh
Confidence 6889999999999876654
No 492
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=58.35 E-value=3.6 Score=38.26 Aligned_cols=21 Identities=19% Similarity=0.341 Sum_probs=17.5
Q ss_pred eEEEEecCCCCccccHHHHHH
Q 038192 52 AVIICGETGCGKTTQVPQFLF 72 (764)
Q Consensus 52 vviI~GeTGSGKTTqvPq~Ll 72 (764)
-+++.|.+|+||||.+=+++-
T Consensus 10 ki~v~G~~~~GKssl~~~~~~ 30 (182)
T 3bwd_D 10 KCVTVGDGAVGKTCLLISYTS 30 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 367889999999999877664
No 493
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=58.32 E-value=5 Score=42.34 Aligned_cols=28 Identities=14% Similarity=0.290 Sum_probs=20.9
Q ss_pred HHHHHHHcCC---eEEEEecCCCCccccHHH
Q 038192 42 EIMEAVNDNS---AVIICGETGCGKTTQVPQ 69 (764)
Q Consensus 42 ~Il~~l~~~~---vviI~GeTGSGKTTqvPq 69 (764)
.+..++++++ .+++.|+.|+||||..=.
T Consensus 13 ~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~~ 43 (334)
T 1a5t_A 13 KLVASYQAGRGHHALLIQALPGMGDDALIYA 43 (334)
T ss_dssp HHHHHHHTTCCCSEEEEECCTTSCHHHHHHH
T ss_pred HHHHHHHcCCcceeEEEECCCCchHHHHHHH
Confidence 4556666665 489999999999976443
No 494
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=58.32 E-value=3.6 Score=38.55 Aligned_cols=21 Identities=29% Similarity=0.487 Sum_probs=17.4
Q ss_pred eEEEEecCCCCccccHHHHHH
Q 038192 52 AVIICGETGCGKTTQVPQFLF 72 (764)
Q Consensus 52 vviI~GeTGSGKTTqvPq~Ll 72 (764)
-|+|.|.+|+||||.+=.++-
T Consensus 13 ki~v~G~~~~GKSsli~~l~~ 33 (195)
T 3bc1_A 13 KFLALGDSGVGKTSVLYQYTD 33 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 368889999999998877654
No 495
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=58.30 E-value=2.4 Score=48.24 Aligned_cols=22 Identities=36% Similarity=0.466 Sum_probs=18.8
Q ss_pred HcCCeEEEEecCCCCccccHHH
Q 038192 48 NDNSAVIICGETGCGKTTQVPQ 69 (764)
Q Consensus 48 ~~~~vviI~GeTGSGKTTqvPq 69 (764)
..+.++.|.|+.||||||.+=.
T Consensus 310 ~~Ge~~~i~G~NGsGKSTLlk~ 331 (538)
T 1yqt_A 310 KKGEVIGIVGPNGIGKTTFVKM 331 (538)
T ss_dssp ETTCEEEEECCTTSSHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHH
Confidence 4578999999999999997654
No 496
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=58.29 E-value=4.7 Score=44.65 Aligned_cols=26 Identities=35% Similarity=0.594 Sum_probs=19.0
Q ss_pred HHHHHHcC----CeEEEEecCCCCccccHH
Q 038192 43 IMEAVNDN----SAVIICGETGCGKTTQVP 68 (764)
Q Consensus 43 Il~~l~~~----~vviI~GeTGSGKTTqvP 68 (764)
+++.+..+ ..+++.|++|||||+..-
T Consensus 52 ~~~~~~~~~~~~~~iLl~GppGtGKT~la~ 81 (456)
T 2c9o_A 52 IVELIKSKKMAGRAVLLAGPPGTGKTALAL 81 (456)
T ss_dssp HHHHHHTTCCTTCEEEEECCTTSSHHHHHH
T ss_pred HHHHHHhCCCCCCeEEEECCCcCCHHHHHH
Confidence 44555544 468999999999997654
No 497
>1w9i_A Myosin II heavy chain; molecular motor, ATPase, motor domain, mutant, muscle contraction; HET: ADP; 1.75A {Dictyostelium discoideum} PDB: 1w9j_A* 1w9l_A* 1w9k_A* 1mma_A* 2aka_A 1d0x_A* 1d0y_A* 1d0z_A* 1d1a_A* 1d1b_A* 1d1c_A* 2xel_A* 1yv3_A* 3bz7_A* 3bz8_A* 3bz9_A* 1jwy_A* 1jx2_A* 3mjx_A* 2jhr_A* ...
Probab=58.23 E-value=4.7 Score=47.71 Aligned_cols=45 Identities=27% Similarity=0.505 Sum_probs=29.4
Q ss_pred hcCCCc--hhhHHHHHHHH---HcCCeEEEEecCCCCcccc---HHHHHHHhc
Q 038192 31 RKDLPI--VMMEQEIMEAV---NDNSAVIICGETGCGKTTQ---VPQFLFEAG 75 (764)
Q Consensus 31 R~~LPi--~~~~~~Il~~l---~~~~vviI~GeTGSGKTTq---vPq~Lle~~ 75 (764)
|..+|- |..-+.....+ ..||.+||+||.|+|||.. |-|||..-+
T Consensus 148 ~~~~pPHifaiA~~Ay~~m~~~~~nQsIiisGESGAGKTe~tK~i~~yla~~~ 200 (770)
T 1w9i_A 148 RNEVAPHIFAISDVAYRSMLDDRQNQSLLITGESGAGKTENTKKVIQYLASVA 200 (770)
T ss_dssp GGGSCCCHHHHHHHHHHHHHHHCCCEEEEEECSTTSSHHHHHHHHHHHHHHHH
T ss_pred cCCCCccHHHHHHHHHHHHHhhcCCcEEEEecCCCCcchHHHHHHHHHHHHhc
Confidence 345553 33334443333 4578999999999999974 667776543
No 498
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=58.02 E-value=3.6 Score=37.59 Aligned_cols=18 Identities=33% Similarity=0.656 Sum_probs=15.3
Q ss_pred EEEEecCCCCccccHHHH
Q 038192 53 VIICGETGCGKTTQVPQF 70 (764)
Q Consensus 53 viI~GeTGSGKTTqvPq~ 70 (764)
+++.|.+|+||||.+=.+
T Consensus 5 i~~vG~~~~GKSsli~~l 22 (166)
T 3q72_A 5 VLLLGAPGVGKSALARIF 22 (166)
T ss_dssp EEEEESTTSSHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHH
Confidence 678899999999987554
No 499
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=57.95 E-value=2.6 Score=47.88 Aligned_cols=22 Identities=32% Similarity=0.514 Sum_probs=18.9
Q ss_pred HcCCeEEEEecCCCCccccHHH
Q 038192 48 NDNSAVIICGETGCGKTTQVPQ 69 (764)
Q Consensus 48 ~~~~vviI~GeTGSGKTTqvPq 69 (764)
..+.++.|.|+.||||||.+=.
T Consensus 23 ~~Gei~gLiGpNGaGKSTLlki 44 (538)
T 3ozx_A 23 KNNTILGVLGKNGVGKTTVLKI 44 (538)
T ss_dssp CTTEEEEEECCTTSSHHHHHHH
T ss_pred CCCCEEEEECCCCCcHHHHHHH
Confidence 4688999999999999998753
No 500
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=57.86 E-value=3.7 Score=38.78 Aligned_cols=20 Identities=25% Similarity=0.587 Sum_probs=17.5
Q ss_pred EEEEecCCCCccccHHHHHH
Q 038192 53 VIICGETGCGKTTQVPQFLF 72 (764)
Q Consensus 53 viI~GeTGSGKTTqvPq~Ll 72 (764)
|+|.|.+|+||||.+=+++-
T Consensus 19 i~v~G~~~~GKSsli~~l~~ 38 (196)
T 3tkl_A 19 LLLIGDSGVGKSCLLLRFAD 38 (196)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHc
Confidence 78899999999999877764
Done!