Query 038194
Match_columns 349
No_of_seqs 201 out of 1158
Neff 3.7
Searched_HMMs 46136
Date Fri Mar 29 08:32:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038194.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/038194hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd00018 AP2 DNA-binding domain 99.8 1.1E-19 2.4E-24 136.0 7.8 61 63-123 1-61 (61)
2 smart00380 AP2 DNA-binding dom 99.8 1.9E-19 4E-24 136.5 8.4 64 64-127 1-64 (64)
3 PHA00280 putative NHN endonucl 99.8 1.6E-19 3.5E-24 154.7 6.3 81 34-118 39-120 (121)
4 PF00847 AP2: AP2 domain; Int 99.1 9.2E-11 2E-15 85.7 5.9 52 63-114 1-56 (56)
5 PF14657 Integrase_AP2: AP2-li 86.3 2.2 4.8E-05 30.5 5.2 38 75-112 1-42 (46)
6 cd00801 INT_P4 Bacteriophage P 79.0 3.8 8.2E-05 38.0 5.2 41 72-112 8-50 (357)
7 PHA02601 int integrase; Provis 67.2 8.7 0.00019 36.2 4.6 43 67-110 2-45 (333)
8 PF13392 HNH_3: HNH endonuclea 56.3 1.1 2.5E-05 31.9 -2.6 20 33-52 27-46 (46)
9 PF05036 SPOR: Sporulation rel 54.3 15 0.00033 26.9 3.0 25 84-108 41-65 (76)
10 PF13356 DUF4102: Domain of un 51.9 21 0.00045 28.4 3.7 38 74-111 35-74 (89)
11 PRK09692 integrase; Provisiona 50.1 42 0.0009 33.1 6.2 38 74-111 41-82 (413)
12 PF08846 DUF1816: Domain of un 47.7 41 0.00089 27.0 4.6 41 74-114 8-48 (68)
13 PF10729 CedA: Cell division a 38.6 52 0.0011 27.0 3.9 39 62-103 30-68 (80)
14 PF08471 Ribonuc_red_2_N: Clas 35.0 41 0.00088 28.6 3.0 21 91-111 70-90 (93)
15 PF09954 DUF2188: Uncharacteri 29.8 1.4E+02 0.0031 22.3 4.9 36 71-110 6-41 (62)
16 PRK10927 essential cell divisi 27.2 79 0.0017 32.2 4.0 34 76-109 273-306 (319)
17 COG0197 RplP Ribosomal protein 26.3 88 0.0019 28.5 3.8 37 75-114 95-131 (146)
18 PRK10113 cell division modulat 23.6 65 0.0014 26.4 2.2 39 63-104 31-69 (80)
19 KOG4817 Unnamed protein [Funct 22.0 2.4E+02 0.0051 29.8 6.3 11 197-207 267-277 (468)
20 COG3065 Slp Starvation-inducib 20.2 39 0.00084 32.0 0.3 28 319-346 145-173 (191)
No 1
>cd00018 AP2 DNA-binding domain found in transcription regulators in plants such as APETALA2 and EREBP (ethylene responsive element binding protein). In EREBPs the domain specifically binds to the 11bp GCC box of the ethylene response element (ERE), a promotor element essential for ethylene responsiveness. EREBPs and the C-repeat binding factor CBF1, which is involved in stress response, contain a single copy of the AP2 domain. APETALA2-like proteins, which play a role in plant development contain two copies.
Probab=99.80 E-value=1.1e-19 Score=135.98 Aligned_cols=61 Identities=69% Similarity=1.115 Sum_probs=56.7
Q ss_pred CceeeEEECCCCcEEEEEecCCCCceEeccCCCCHHHHHHHHHHHHHHHhCCCCCCCCCCC
Q 038194 63 FRYRGVRQRSWGKWVAEIREPRKRTRKWLGTFATAEDAARAYDRAAIILYGSRAQLNLQPS 123 (349)
Q Consensus 63 SgYRGVr~r~~GKW~ArI~~~gkkKri~LGTFdTeEEAArAYDrAAikl~G~~A~lNFp~s 123 (349)
|+||||+++++|||+|+|+++..++++|||+|+|+||||+|||+|+++++|.++++||+++
T Consensus 1 s~~~GV~~~~~gkw~A~I~~~~~gk~~~lG~f~t~eeAa~Ayd~a~~~~~g~~a~~Nf~~~ 61 (61)
T cd00018 1 SKYRGVRQRPWGKWVAEIRDPSGGRRIWLGTFDTAEEAARAYDRAALKLRGSSAVLNFPDS 61 (61)
T ss_pred CCccCEEECCCCcEEEEEEeCCCCceEccCCCCCHHHHHHHHHHHHHHhcCCccccCCCCC
Confidence 6899998777799999999976688899999999999999999999999999999999974
No 2
>smart00380 AP2 DNA-binding domain in plant proteins such as APETALA2 and EREBPs.
Probab=99.80 E-value=1.9e-19 Score=136.55 Aligned_cols=64 Identities=66% Similarity=1.083 Sum_probs=60.0
Q ss_pred ceeeEEECCCCcEEEEEecCCCCceEeccCCCCHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCC
Q 038194 64 RYRGVRQRSWGKWVAEIREPRKRTRKWLGTFATAEDAARAYDRAAIILYGSRAQLNLQPSTSSS 127 (349)
Q Consensus 64 gYRGVr~r~~GKW~ArI~~~gkkKri~LGTFdTeEEAArAYDrAAikl~G~~A~lNFp~s~y~a 127 (349)
+||||+++++|||+|+|+++.+++++|||+|+|+||||+|||+|+++++|.++++||+.+.|++
T Consensus 1 ~~kGV~~~~~gkw~A~I~~~~~~k~~~lG~f~t~eeAa~Ayd~a~~~~~g~~a~~Nf~~~~y~~ 64 (64)
T smart00380 1 KYRGVRQRPWGKWVAEIRDPSKGKRVWLGTFDTAEEAARAYDRAAFKFRGRSARLNFPNSLYDS 64 (64)
T ss_pred CEeeEEeCCCCeEEEEEEecCCCcEEecCCCCCHHHHHHHHHHHHHHhcCCccccCCCCccCCC
Confidence 5999977888999999999888889999999999999999999999999999999999998853
No 3
>PHA00280 putative NHN endonuclease
Probab=99.78 E-value=1.6e-19 Score=154.71 Aligned_cols=81 Identities=12% Similarity=0.114 Sum_probs=73.2
Q ss_pred CccCCCCCCCcCCcCcccCCCCCCCCCCCCceeeE-EECCCCcEEEEEecCCCCceEeccCCCCHHHHHHHHHHHHHHHh
Q 038194 34 NTCNNSSNNNNNNNNNKKCKGKGGPDNSKFRYRGV-RQRSWGKWVAEIREPRKRTRKWLGTFATAEDAARAYDRAAIILY 112 (349)
Q Consensus 34 sscN~psNLR~aTrsqN~rN~r~~~~nnkSgYRGV-r~r~~GKW~ArI~~~gkkKri~LGTFdTeEEAArAYDrAAikl~ 112 (349)
..+|+++|||++|+.+|.+|+ +..++++|||||| |++..|||+|+|++ .+|+++||.|+++|||+.||+ ++++||
T Consensus 39 ~~dnri~NLr~~T~~eN~~N~-~~~~~N~SG~kGV~~~k~~~kw~A~I~~--~gK~~~lG~f~~~e~A~~a~~-~~~~lh 114 (121)
T PHA00280 39 PLNDALDNLRLALPKENSWNM-KTPKSNTSGLKGLSWSKEREMWRGTVTA--EGKQHNFRSRDLLEVVAWIYR-TRRELH 114 (121)
T ss_pred CCCCcHHHhhhcCHHHHhccc-CCCCCCCCCCCeeEEecCCCeEEEEEEE--CCEEEEcCCCCCHHHHHHHHH-HHHHHh
Confidence 567899999999999999995 4677899999999 68889999999998 777799999999999999997 788999
Q ss_pred CCCCCC
Q 038194 113 GSRAQL 118 (349)
Q Consensus 113 G~~A~l 118 (349)
|+||+.
T Consensus 115 GeFa~~ 120 (121)
T PHA00280 115 GQFARF 120 (121)
T ss_pred hccccC
Confidence 999853
No 4
>PF00847 AP2: AP2 domain; InterPro: IPR001471 Pathogenesis-related genes transcriptional activator binds to the GCC-box pathogenesis-related promoter element and activates the plant's defence genes. Ethylene, chemically the simplest plant hormone, participates in a number of stress responses and developmental processes: e.g., fruit ripening, inhibition of stem and root elongation, promotion of seed germination and flowering, senescence of leaves and flowers, and sex determination []. DNA sequence elements that confer ethylene responsiveness have been shown to contain two 11bp GCC boxes, which are necessary and sufficient for transcriptional control by ethylene. Ethylene responsive element binding proteins (EREBPs) have now been identified in a variety of plants. The proteins share a similar domain of around 59 amino acids, which interacts directly with the GCC box in the ERE.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 3IGM_A 3GCC_A 1GCC_A 2GCC_A.
Probab=99.14 E-value=9.2e-11 Score=85.69 Aligned_cols=52 Identities=38% Similarity=0.507 Sum_probs=45.3
Q ss_pred CceeeE-EECCCCcEEEEEecCC---CCceEeccCCCCHHHHHHHHHHHHHHHhCC
Q 038194 63 FRYRGV-RQRSWGKWVAEIREPR---KRTRKWLGTFATAEDAARAYDRAAIILYGS 114 (349)
Q Consensus 63 SgYRGV-r~r~~GKW~ArI~~~g---kkKri~LGTFdTeEEAArAYDrAAikl~G~ 114 (349)
|+|+|| +.+..++|+|+|++.. ++++++||.|+++|||++||++++++++|+
T Consensus 1 s~~~GV~~~~~~~~W~a~i~~~~~~g~~k~f~~g~fg~~~eA~~~a~~~r~~~~~e 56 (56)
T PF00847_consen 1 SGYKGVSWDKRRGRWRAQIRVWSENGKRKRFSVGKFGFEEEAKRAAIEARKELEGE 56 (56)
T ss_dssp SSSTTEEEETTTTEEEEEEEECCCTTEEEEEEECCCCCHHHHHHHHHHHHHHCTS-
T ss_pred CCcEEEEEcCCCCEEEEEEEEcccCcccEEEeCccCCCHHHHHHHHHHHHHHhcCC
Confidence 689999 5778899999999831 148899999999999999999999999875
No 5
>PF14657 Integrase_AP2: AP2-like DNA-binding integrase domain
Probab=86.32 E-value=2.2 Score=30.55 Aligned_cols=38 Identities=24% Similarity=0.344 Sum_probs=30.8
Q ss_pred cEEEEEe--c--CCCCceEeccCCCCHHHHHHHHHHHHHHHh
Q 038194 75 KWVAEIR--E--PRKRTRKWLGTFATAEDAARAYDRAAIILY 112 (349)
Q Consensus 75 KW~ArI~--~--~gkkKri~LGTFdTeEEAArAYDrAAikl~ 112 (349)
+|..+|. . .++.++++-+-|.|..||..+..++..++.
T Consensus 1 ~w~~~v~g~~~~~Gkrk~~~k~GF~TkkeA~~~~~~~~~~~~ 42 (46)
T PF14657_consen 1 TWYYRVYGYDDETGKRKQKTKRGFKTKKEAEKALAKIEAELE 42 (46)
T ss_pred CEEEEEEEEECCCCCEEEEEcCCCCcHHHHHHHHHHHHHHHH
Confidence 6888883 3 466688999999999999999988777664
No 6
>cd00801 INT_P4 Bacteriophage P4 integrase. P4-like integrases are found in temperate bacteriophages, integrative plasmids, pathogenicity and symbiosis islands, and other mobile genetic elements. They share the same fold in their catalytic domain and the overall reaction mechanism with the superfamily of DNA breaking-rejoining enzymes. The P4 integrase mediates integrative and excisive site-specific recombination between two sites, called attachment sites, located on the phage genome and the bacterial chromosome. The phage attachment site is often found adjacent to the integrase gene, while the host attachment sites are typically situated near tRNA genes.
Probab=79.02 E-value=3.8 Score=38.00 Aligned_cols=41 Identities=27% Similarity=0.366 Sum_probs=32.3
Q ss_pred CCCcEEEEEecCCCCceEeccCCC--CHHHHHHHHHHHHHHHh
Q 038194 72 SWGKWVAEIREPRKRTRKWLGTFA--TAEDAARAYDRAAIILY 112 (349)
Q Consensus 72 ~~GKW~ArI~~~gkkKri~LGTFd--TeEEAArAYDrAAikl~ 112 (349)
..+.|..+++..++.+++.||+|+ +.++|.....+....+.
T Consensus 8 g~~~~~~~~~~~g~~~~~~~g~~~~~~~~~A~~~~~~~~~~~~ 50 (357)
T cd00801 8 GSKSWRFRYRLAGKRKRLTLGSYPAVSLAEAREKADEARALLA 50 (357)
T ss_pred CCEEEEEEeccCCceeEEeCcCCCCCCHHHHHHHHHHHHHHHH
Confidence 346799999998888899999995 77888877776666554
No 7
>PHA02601 int integrase; Provisional
Probab=67.21 E-value=8.7 Score=36.21 Aligned_cols=43 Identities=30% Similarity=0.337 Sum_probs=28.4
Q ss_pred eEEECCCCcEEEEEecC-CCCceEeccCCCCHHHHHHHHHHHHHH
Q 038194 67 GVRQRSWGKWVAEIREP-RKRTRKWLGTFATAEDAARAYDRAAII 110 (349)
Q Consensus 67 GVr~r~~GKW~ArI~~~-gkkKri~LGTFdTeEEAArAYDrAAik 110 (349)
+|++++.|+|+++|+.. ..++++. .+|.|.+||.+..+.....
T Consensus 2 ~~~~~~~g~w~~~~~~~~~~g~r~~-~~f~tk~eA~~~~~~~~~~ 45 (333)
T PHA02601 2 AVRKLKDGKWLCEIYPNGRDGKRIR-KRFATKGEALAFENYTMAE 45 (333)
T ss_pred ceEEcCCCCEEEEEEECCCCCchhh-hhhcCHHHHHHHHHHHHHh
Confidence 46667778999999853 1233443 3699999987665554443
No 8
>PF13392 HNH_3: HNH endonuclease; PDB: 1U3E_M.
Probab=56.27 E-value=1.1 Score=31.87 Aligned_cols=20 Identities=15% Similarity=0.062 Sum_probs=12.3
Q ss_pred CCccCCCCCCCcCCcCcccC
Q 038194 33 DNTCNNSSNNNNNNNNNKKC 52 (349)
Q Consensus 33 ~sscN~psNLR~aTrsqN~r 52 (349)
...||+++|||++++++|.+
T Consensus 27 ~~~~n~~~NL~~~t~~en~r 46 (46)
T PF13392_consen 27 NKTDNRPENLRWVTRSENSR 46 (46)
T ss_dssp -TT---GGGEEEE-HHHHH-
T ss_pred CCCCCCHHHceECCHHHhCc
Confidence 35899999999999988764
No 9
>PF05036 SPOR: Sporulation related domain; InterPro: IPR007730 This 70 residue domain is composed of two 35 residue repeats that are found in bacterial proteins involved in sporulation and cell division, such as FtsN, CwlM and RlpA. This repeat might be involved in binding peptidoglycan. FtsN is an essential cell division protein with a simple bitopic topology: a short N-terminal cytoplasmic segment fused to a large carboxy periplasmic domain through a single transmembrane domain. The repeats lie at the periplasmic C terminus, which has an RNP-like fold []. FtsN localises to the septum ring complex. The CwlM protein is a cell wall hydrolase, where the C-terminal region, including the repeats, determines substrate specificity []. RlpA is a rare lipoprotein A protein that may be important for cell division. Its N-terminal cysteine may be attached to thioglyceride and N-fatty acyl residues [].; PDB: 1X60_A 1UTA_A.
Probab=54.31 E-value=15 Score=26.92 Aligned_cols=25 Identities=24% Similarity=0.336 Sum_probs=20.4
Q ss_pred CCCceEeccCCCCHHHHHHHHHHHH
Q 038194 84 RKRTRKWLGTFATAEDAARAYDRAA 108 (349)
Q Consensus 84 gkkKri~LGTFdTeEEAArAYDrAA 108 (349)
...-++.+|.|++.+||..+..+..
T Consensus 41 ~~~yrV~~G~f~~~~~A~~~~~~l~ 65 (76)
T PF05036_consen 41 GPWYRVRVGPFSSREEAEAALRKLK 65 (76)
T ss_dssp TTCEEEEECCECTCCHHHHHHHHHH
T ss_pred CceEEEEECCCCCHHHHHHHHHHHh
Confidence 3445788999999999998887666
No 10
>PF13356 DUF4102: Domain of unknown function (DUF4102); PDB: 3JU0_A 3RMP_A 3JTZ_A 2KJ8_A.
Probab=51.89 E-value=21 Score=28.37 Aligned_cols=38 Identities=18% Similarity=0.218 Sum_probs=28.8
Q ss_pred CcEEEEEecCCCCceEeccCCCC--HHHHHHHHHHHHHHH
Q 038194 74 GKWVAEIREPRKRTRKWLGTFAT--AEDAARAYDRAAIIL 111 (349)
Q Consensus 74 GKW~ArI~~~gkkKri~LGTFdT--eEEAArAYDrAAikl 111 (349)
..|..+.+..++.+++-||.|.. .+||.....++...+
T Consensus 35 kt~~~r~~~~gk~~~~~lG~~p~~sl~~AR~~a~~~~~~~ 74 (89)
T PF13356_consen 35 KTFYFRYRINGKRRRITLGRYPELSLAEAREKARELRALV 74 (89)
T ss_dssp EEEEEEEEETTEEEEEEEEECTTS-HHHHHHHHHHHHHHH
T ss_pred eEEEEEEEecceEEEeccCCCccCCHHHHHHHHHHHHHHH
Confidence 45999999888889999999965 666666665555444
No 11
>PRK09692 integrase; Provisional
Probab=50.09 E-value=42 Score=33.14 Aligned_cols=38 Identities=24% Similarity=0.419 Sum_probs=26.6
Q ss_pred CcEEEEEecC--CCCceEeccCCC--CHHHHHHHHHHHHHHH
Q 038194 74 GKWVAEIREP--RKRTRKWLGTFA--TAEDAARAYDRAAIIL 111 (349)
Q Consensus 74 GKW~ArI~~~--gkkKri~LGTFd--TeEEAArAYDrAAikl 111 (349)
..|+.+.+.+ ++.+++-||.|. |..||.++..++...+
T Consensus 41 k~~~~rY~~~~~gk~~~~~lG~yp~~sl~~AR~~a~~~~~~~ 82 (413)
T PRK09692 41 KIWQFRYYRPLTKTRAKKSFGPYPSVTLADARNYRAESRSLL 82 (413)
T ss_pred EEEEEEEecCCCCceeeeeCCCCCCCCHHHHHHHHHHHHHHH
Confidence 4599998743 444557899999 7888877665555544
No 12
>PF08846 DUF1816: Domain of unknown function (DUF1816); InterPro: IPR014945 Q4C9H3 from SWISSPROT is associated with the IPR008213 from INTERPRO domain suggesting this protein could have a role in phycobilisomes.
Probab=47.67 E-value=41 Score=26.97 Aligned_cols=41 Identities=22% Similarity=0.273 Sum_probs=30.4
Q ss_pred CcEEEEEecCCCCceEeccCCCCHHHHHHHHHHHHHHHhCC
Q 038194 74 GKWVAEIREPRKRTRKWLGTFATAEDAARAYDRAAIILYGS 114 (349)
Q Consensus 74 GKW~ArI~~~gkkKri~LGTFdTeEEAArAYDrAAikl~G~ 114 (349)
-.|=++|.-..-+-..|.|-|++.+||..+...-..-|..+
T Consensus 8 laWWveI~T~~P~ctYyFGPF~s~~eA~~~~~gyieDL~~E 48 (68)
T PF08846_consen 8 LAWWVEIETQNPNCTYYFGPFDSREEAEAALPGYIEDLESE 48 (68)
T ss_pred CcEEEEEEcCCCCEEEEeCCcCCHHHHHHHhccHHHHHHhh
Confidence 35778888755556789999999999998866555555443
No 13
>PF10729 CedA: Cell division activator CedA; InterPro: IPR019666 CedA is made up of four antiparallel beta-strands and an alpha-helix. It activates cell division by inhibiting chromosome over-replication. This is mediated by binding to dsDNA via the beta-sheet [, ]. ; GO: 0003677 DNA binding, 0051301 cell division; PDB: 2BN8_A 2D35_A.
Probab=38.57 E-value=52 Score=27.00 Aligned_cols=39 Identities=28% Similarity=0.253 Sum_probs=26.1
Q ss_pred CCceeeEEECCCCcEEEEEecCCCCceEeccCCCCHHHHHHH
Q 038194 62 KFRYRGVRQRSWGKWVAEIREPRKRTRKWLGTFATAEDAARA 103 (349)
Q Consensus 62 kSgYRGVr~r~~GKW~ArI~~~gkkKri~LGTFdTeEEAArA 103 (349)
--+||-||.-+ |||+|.+.. +..-.---.|.-+|.|-|-
T Consensus 30 ~dgfrdvw~lr-gkyvafvl~--ge~f~rsp~fs~pesaqrw 68 (80)
T PF10729_consen 30 MDGFRDVWQLR-GKYVAFVLM--GEHFRRSPAFSVPESAQRW 68 (80)
T ss_dssp TTTECCECCCC-CEEEEEEES--SS-EEE---BSSHHHHHHH
T ss_pred cccccceeeec-cceEEEEEe--cchhccCCCcCCcHHHHHH
Confidence 34799998766 999999986 3333345678888877664
No 14
>PF08471 Ribonuc_red_2_N: Class II vitamin B12-dependent ribonucleotide reductase; InterPro: IPR013678 This domain is found to the N terminus of the ribonucleotide reductase barrel domain (IPR000788 from INTERPRO). It occurs in bacterial class II ribonucleotide reductase proteins which depend upon coenzyme B12 (deoxyadenosylcobalamine) []. ; GO: 0004748 ribonucleoside-diphosphate reductase activity, 0050897 cobalt ion binding, 0055114 oxidation-reduction process
Probab=35.02 E-value=41 Score=28.63 Aligned_cols=21 Identities=48% Similarity=0.605 Sum_probs=18.6
Q ss_pred ccCCCCHHHHHHHHHHHHHHH
Q 038194 91 LGTFATAEDAARAYDRAAIIL 111 (349)
Q Consensus 91 LGTFdTeEEAArAYDrAAikl 111 (349)
-|+|+|+|+|..-||+.+-.|
T Consensus 70 ~GYF~t~eDA~~FydEl~~mL 90 (93)
T PF08471_consen 70 GGYFATEEDAEAFYDELTYML 90 (93)
T ss_pred CCCcCCHHHHHHHHHHHHHHH
Confidence 599999999999999987665
No 15
>PF09954 DUF2188: Uncharacterized protein conserved in bacteria (DUF2188); InterPro: IPR018691 This family has no known function.
Probab=29.76 E-value=1.4e+02 Score=22.29 Aligned_cols=36 Identities=25% Similarity=0.244 Sum_probs=24.8
Q ss_pred CCCCcEEEEEecCCCCceEeccCCCCHHHHHHHHHHHHHH
Q 038194 71 RSWGKWVAEIREPRKRTRKWLGTFATAEDAARAYDRAAII 110 (349)
Q Consensus 71 r~~GKW~ArI~~~gkkKri~LGTFdTeEEAArAYDrAAik 110 (349)
+..+.|..+.-. ..+ -..+|+|.+||..+=.+.|+.
T Consensus 6 ~~~~~W~v~~eg--~~r--a~~~~~Tk~eAi~~Ar~~a~~ 41 (62)
T PF09954_consen 6 REDGGWAVKKEG--AKR--ASKTFDTKAEAIEAARELAKN 41 (62)
T ss_pred cCCCCceEEeCC--Ccc--cccccCcHHHHHHHHHHHHHh
Confidence 455789877653 332 278999999998776555554
No 16
>PRK10927 essential cell division protein FtsN; Provisional
Probab=27.21 E-value=79 Score=32.16 Aligned_cols=34 Identities=18% Similarity=0.277 Sum_probs=26.9
Q ss_pred EEEEEecCCCCceEeccCCCCHHHHHHHHHHHHH
Q 038194 76 WVAEIREPRKRTRKWLGTFATAEDAARAYDRAAI 109 (349)
Q Consensus 76 W~ArI~~~gkkKri~LGTFdTeEEAArAYDrAAi 109 (349)
|.|+|...+.-.||.||-|.+.++|.++.++...
T Consensus 273 ~~A~I~~~g~~~RVrVGPf~sr~eAe~a~~rLk~ 306 (319)
T PRK10927 273 FDSKITTNNGWNRVVIGPVKGKENADSTLNRLKM 306 (319)
T ss_pred CeeEEccCCcEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 6777765555678999999999999999876543
No 17
>COG0197 RplP Ribosomal protein L16/L10E [Translation, ribosomal structure and biogenesis]
Probab=26.30 E-value=88 Score=28.52 Aligned_cols=37 Identities=24% Similarity=0.147 Sum_probs=28.9
Q ss_pred cEEEEEecCCCCceEeccCCCCHHHHHHHHHHHHHHHhCC
Q 038194 75 KWVAEIREPRKRTRKWLGTFATAEDAARAYDRAAIILYGS 114 (349)
Q Consensus 75 KW~ArI~~~gkkKri~LGTFdTeEEAArAYDrAAikl~G~ 114 (349)
.|.|+|.. ++-++-=....+|.|.+|..+|+.||=+.
T Consensus 95 gwaArVkp---G~vlfei~g~~e~~A~EAlr~Aa~KLP~~ 131 (146)
T COG0197 95 GWAARVKP---GRVLFEIAGVPEELAREALRRAAAKLPVK 131 (146)
T ss_pred EEEEEecC---CcEEEEEecCcHHHHHHHHHHHhhcCCCc
Confidence 39999984 44466666788888999999999998554
No 18
>PRK10113 cell division modulator; Provisional
Probab=23.57 E-value=65 Score=26.39 Aligned_cols=39 Identities=26% Similarity=0.180 Sum_probs=27.0
Q ss_pred CceeeEEECCCCcEEEEEecCCCCceEeccCCCCHHHHHHHH
Q 038194 63 FRYRGVRQRSWGKWVAEIREPRKRTRKWLGTFATAEDAARAY 104 (349)
Q Consensus 63 SgYRGVr~r~~GKW~ArI~~~gkkKri~LGTFdTeEEAArAY 104 (349)
-+||-||.-+ |||+|.+.....= .---.|..+|.|-|--
T Consensus 31 d~frDVW~Lr-GKYVAFvl~ge~F--rRSPaFs~PEsAQRWA 69 (80)
T PRK10113 31 DSFRDVWMLR-GKYVAFVLMGESF--LRSPAFSVPESAQRWA 69 (80)
T ss_pred cchhhhheec-cceEEEEEechhh--ccCCccCCcHHHHHHH
Confidence 4788898666 9999998862222 2246788888777643
No 19
>KOG4817 consensus Unnamed protein [Function unknown]
Probab=22.03 E-value=2.4e+02 Score=29.83 Aligned_cols=11 Identities=18% Similarity=-0.197 Sum_probs=6.6
Q ss_pred ccCccccccch
Q 038194 197 SVSSALLCPNI 207 (349)
Q Consensus 197 ~~~~~~~c~~~ 207 (349)
++++.+.|...
T Consensus 267 t~~~~~~~gp~ 277 (468)
T KOG4817|consen 267 TVGSGAGGGPG 277 (468)
T ss_pred CcccccccCCC
Confidence 46666666543
No 20
>COG3065 Slp Starvation-inducible outer membrane lipoprotein [Cell envelope biogenesis, outer membrane]
Probab=20.16 E-value=39 Score=32.03 Aligned_cols=28 Identities=39% Similarity=0.678 Sum_probs=23.7
Q ss_pred CCCcCCCCCCCCCC-CCCCCCCCCcccCC
Q 038194 319 SIWPLTNEEDYPPT-CLWDYTDPFLFDPF 346 (349)
Q Consensus 319 ~~w~~~~~~~~~~~-~~wd~~dp~~~~~~ 346 (349)
-+|.|+.|-||+|. ..|||.++.+|=||
T Consensus 145 ~lW~l~~~v~~~p~~~pW~~~~~~~~~~~ 173 (191)
T COG3065 145 KLWHLTREVEVPPTIGPWDYGGRGGWWPP 173 (191)
T ss_pred EEEEEeEEEEcCCcccCcCCCCccccCCC
Confidence 48999999999995 79999998877643
Done!