Query 038194
Match_columns 349
No_of_seqs 201 out of 1158
Neff 3.7
Searched_HMMs 29240
Date Mon Mar 25 14:27:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038194.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/038194hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1gcc_A Ethylene responsive ele 99.9 1.4E-22 4.8E-27 154.1 6.3 60 64-123 2-62 (63)
2 1u3e_M HNH homing endonuclease 97.5 6.2E-07 2.1E-11 78.0 -8.2 67 34-105 80-146 (174)
3 3igm_B PF14_0633 protein; AP2 90.6 0.18 6.3E-06 40.0 3.4 24 60-83 3-27 (77)
4 3jtz_A Integrase; four strande 74.5 2.7 9.1E-05 33.1 3.6 39 74-112 36-76 (88)
5 1z1b_A Integrase; protein-DNA 71.0 4.7 0.00016 36.1 4.9 42 66-111 14-55 (356)
6 3ju0_A Phage integrase; four s 56.5 8.1 0.00028 31.5 3.3 38 74-111 36-75 (108)
7 1x60_A Sporulation-specific N- 52.8 8 0.00027 28.6 2.4 32 78-109 37-68 (79)
8 1uta_A FTSN, MSGA, cell divisi 51.7 12 0.00039 28.1 3.2 33 77-109 36-68 (81)
9 2ftc_I Mitochondrial ribosomal 33.5 47 0.0016 27.6 4.4 36 76-113 80-115 (118)
10 1kcq_A Gelsolin, brevin, ADF, 22.3 1.1E+02 0.0039 23.7 4.6 37 74-110 27-63 (104)
No 1
>1gcc_A Ethylene responsive element binding factor 1; transcription factor, protein-DNA complex, ethylene inducible; HET: DNA; NMR {Arabidopsis thaliana} SCOP: d.10.1.2 PDB: 2gcc_A 3gcc_A
Probab=99.86 E-value=1.4e-22 Score=154.10 Aligned_cols=60 Identities=67% Similarity=1.049 Sum_probs=56.4
Q ss_pred ceeeEEECCCCcEEEEEecCCC-CceEeccCCCCHHHHHHHHHHHHHHHhCCCCCCCCCCC
Q 038194 64 RYRGVRQRSWGKWVAEIREPRK-RTRKWLGTFATAEDAARAYDRAAIILYGSRAQLNLQPS 123 (349)
Q Consensus 64 gYRGVr~r~~GKW~ArI~~~gk-kKri~LGTFdTeEEAArAYDrAAikl~G~~A~lNFp~s 123 (349)
+||||+++++|||+|+|+++.+ ++++|||+|+|+||||+|||+|+++++|.++++|||.+
T Consensus 2 ~yrGV~~r~~gkw~A~I~~~~~~g~r~~LGtf~T~eeAA~AyD~Aa~~~~G~~a~~NFp~~ 62 (63)
T 1gcc_A 2 HYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFPLR 62 (63)
T ss_dssp CCTTEEEETTTEEEEEEEETTTTSEEEEEEEESSHHHHHHHHHHHHHHHHSSCCCCSSCTT
T ss_pred CcccEeeCCCCcEEEEEccccCCCeEEEeeeCCCHHHHHHHHHHHHHHhcCcccccCCCCc
Confidence 6999987789999999999875 68999999999999999999999999999999999975
No 2
>1u3e_M HNH homing endonuclease; HNH catalytic motif, helix-turn-helix DNA binding domain, PR complex, DNA binding protein-DNA complex; 2.92A {Bacillus phage SPO1} SCOP: d.4.1.3 d.285.1.1
Probab=97.53 E-value=6.2e-07 Score=78.01 Aligned_cols=67 Identities=7% Similarity=-0.108 Sum_probs=49.9
Q ss_pred CccCCCCCCCcCCcCcccCCCCCCCCCCCCceeeEEECCCCcEEEEEecCCCCceEeccCCCCHHHHHHHHH
Q 038194 34 NTCNNSSNNNNNNNNNKKCKGKGGPDNSKFRYRGVRQRSWGKWVAEIREPRKRTRKWLGTFATAEDAARAYD 105 (349)
Q Consensus 34 sscN~psNLR~aTrsqN~rN~r~~~~nnkSgYRGVr~r~~GKW~ArI~~~gkkKri~LGTFdTeEEAArAYD 105 (349)
..+|+++|||++|+.+|.+++...... . .++||..+..++|.+.|... +.++||.|++.+|||++|.
T Consensus 80 k~nn~~~NL~~~t~~eN~~~~~~~~~~-~-~~~g~~~~~~~k~~~vi~~~---~~~~~~~f~s~~eAa~~~G 146 (174)
T 1u3e_M 80 KDNNLSTNLRWVTQKINVENQMSRGTL-N-VSKAQQIAKIKNQKPIIVIS---PDGIEKEYPSTKCACEELG 146 (174)
T ss_dssp TTCCCGGGEEEECHHHHHHHHHHHTCC-C-CHHHHHHHHHHTCCCEEEEC---TTSCEEEESCHHHHHHHHT
T ss_pred CCCCCHHHcEECCHHHHhhcccccCcc-c-ceeeeeeccCCCCceEEEEc---CCceEEeeCCHHHHHHHHC
Confidence 578899999999999999884332212 1 24677324456799999884 3477999999999999963
No 3
>3igm_B PF14_0633 protein; AP2 domain, specific transcription FA protein-DNA complex, transcription-DNA complex; 2.20A {Plasmodium falciparum}
Probab=90.64 E-value=0.18 Score=39.99 Aligned_cols=24 Identities=21% Similarity=0.363 Sum_probs=20.8
Q ss_pred CCCCceeeE-EECCCCcEEEEEecC
Q 038194 60 NSKFRYRGV-RQRSWGKWVAEIREP 83 (349)
Q Consensus 60 nnkSgYRGV-r~r~~GKW~ArI~~~ 83 (349)
..+|+|+|| |+++.+.|.|.-.+.
T Consensus 3 ~~~Sg~pGVsw~kR~~~WlA~W~e~ 27 (77)
T 3igm_B 3 HMSSGYPGVSWNKRMCAWLAFFYDG 27 (77)
T ss_dssp -CCSSSTTEEEETTTTEEEEEEEET
T ss_pred CCCCCCCcEEeecCCceEEEEEecC
Confidence 467999999 899999999999985
No 4
>3jtz_A Integrase; four stranded beta-sheet, DNA binding protein; 1.30A {Yersinia pestis} PDB: 3rmp_A
Probab=74.46 E-value=2.7 Score=33.10 Aligned_cols=39 Identities=23% Similarity=0.370 Sum_probs=32.1
Q ss_pred CcEEEEEecCCCCceEeccCCC--CHHHHHHHHHHHHHHHh
Q 038194 74 GKWVAEIREPRKRTRKWLGTFA--TAEDAARAYDRAAIILY 112 (349)
Q Consensus 74 GKW~ArI~~~gkkKri~LGTFd--TeEEAArAYDrAAikl~ 112 (349)
..|+-+.+..++.+++-||.|. |.+||....+++...+.
T Consensus 36 K~w~~ryr~~Gk~~~~~LG~yp~~sL~~AR~~a~~~r~~l~ 76 (88)
T 3jtz_A 36 RHWYLKYRISGKESRIALGAYPAISLSDARQQREGIRKMLA 76 (88)
T ss_dssp EEEEEEEEETTEEEEEEEEETTTSCHHHHHHHHHHHHHHHT
T ss_pred EEEEEEEEeCCeEEEEEeECCCCCCHHHHHHHHHHHHHHHH
Confidence 4599999988888899999996 68999888887776663
No 5
>1z1b_A Integrase; protein-DNA complex, DNA binding protein/DNA complex; HET: PTR; 3.80A {Enterobacteria phage lambda} SCOP: d.10.1.4 d.163.1.1 PDB: 1z1g_A 1kjk_A 2wcc_3*
Probab=71.03 E-value=4.7 Score=36.05 Aligned_cols=42 Identities=19% Similarity=0.043 Sum_probs=31.2
Q ss_pred eeEEECCCCcEEEEEecCCCCceEeccCCCCHHHHHHHHHHHHHHH
Q 038194 66 RGVRQRSWGKWVAEIREPRKRTRKWLGTFATAEDAARAYDRAAIIL 111 (349)
Q Consensus 66 RGVr~r~~GKW~ArI~~~gkkKri~LGTFdTeEEAArAYDrAAikl 111 (349)
.||+.++.|+|+.++.. .+|++.+|. |.+||..+..++...+
T Consensus 14 ~~v~~~~~g~~~~r~~~--~gk~~~~g~--t~~eA~~~a~~~~~~~ 55 (356)
T 1z1b_A 14 PNLYIRNNGYYCYRDPR--TGKEFGLGR--DRRIAITEAIQANIEL 55 (356)
T ss_dssp TTEEEETTTEEEEECTT--TCCEEEEES--CHHHHHHHHHHHHHHH
T ss_pred ccceecCCCeEEEEeec--CCeEEECCC--CHHHHHHHHHHHHHHH
Confidence 36777777899988665 455688996 9999988877666555
No 6
>3ju0_A Phage integrase; four stranded beta-sheet, DNA binding protein; 1.60A {Pectobacterium atrosepticum}
Probab=56.53 E-value=8.1 Score=31.50 Aligned_cols=38 Identities=26% Similarity=0.357 Sum_probs=31.1
Q ss_pred CcEEEEEecCCCCceEeccCCC--CHHHHHHHHHHHHHHH
Q 038194 74 GKWVAEIREPRKRTRKWLGTFA--TAEDAARAYDRAAIIL 111 (349)
Q Consensus 74 GKW~ArI~~~gkkKri~LGTFd--TeEEAArAYDrAAikl 111 (349)
..|.-+.+..++.+++-||.|. |.+||....+++...+
T Consensus 36 K~w~~rYr~~GK~~~~~LG~yp~~SLa~AR~~a~~~r~~l 75 (108)
T 3ju0_A 36 KYWRLSYRFEKKQRLLALGVYPAVSLADARQRRDEAKKLL 75 (108)
T ss_dssp EEEEEEEEETTEEEEEEEEEETTSCHHHHHHHHHHHHHHH
T ss_pred EEEEEEEEEcCceEEEecCCCCCCCHHHHHHHHHHHHHHH
Confidence 4599999988888889999996 6888888877776665
No 7
>1x60_A Sporulation-specific N-acetylmuramoyl-L-alanine amidase; CWLC, CWLCR, peptidoglycan, cell WALL lytic amidase, tandem repeats, hydrolase; NMR {Bacillus subtilis}
Probab=52.76 E-value=8 Score=28.55 Aligned_cols=32 Identities=16% Similarity=0.157 Sum_probs=22.5
Q ss_pred EEEecCCCCceEeccCCCCHHHHHHHHHHHHH
Q 038194 78 AEIREPRKRTRKWLGTFATAEDAARAYDRAAI 109 (349)
Q Consensus 78 ArI~~~gkkKri~LGTFdTeEEAArAYDrAAi 109 (349)
+.|...+.--|+++|.|.+.+||.++.++...
T Consensus 37 ~~i~~~~~~yRV~vGpf~~~~~A~~~~~~L~~ 68 (79)
T 1x60_A 37 SIVLLKDGLYKVQIGAFSSKDNADTLAARAKN 68 (79)
T ss_dssp EEEEEETTEEEEEEEEESSHHHHHHHHHHHHH
T ss_pred eEEecCCcEEEEEECCcCCHHHHHHHHHHHHH
Confidence 34433233357889999999999988776554
No 8
>1uta_A FTSN, MSGA, cell division protein FTSN; bacterial cell division protein, RNP domain, transmembrane, inner membrane, repeat; NMR {Escherichia coli} SCOP: d.58.52.1
Probab=51.65 E-value=12 Score=28.08 Aligned_cols=33 Identities=18% Similarity=0.249 Sum_probs=24.0
Q ss_pred EEEEecCCCCceEeccCCCCHHHHHHHHHHHHH
Q 038194 77 VAEIREPRKRTRKWLGTFATAEDAARAYDRAAI 109 (349)
Q Consensus 77 ~ArI~~~gkkKri~LGTFdTeEEAArAYDrAAi 109 (349)
.++|...+.--|+.+|-|.+.+||.++.++...
T Consensus 36 ~a~i~~~~~~yRV~vGpf~s~~~A~~~~~~L~~ 68 (81)
T 1uta_A 36 DSKITTNNGWNRVVIGPVKGKENADSTLNRLKM 68 (81)
T ss_dssp CEEEEECSSSEEEEESSCBTTTHHHHHHHHHHH
T ss_pred CeEEEeCCcEEEEEECCcCCHHHHHHHHHHHHH
Confidence 445554344467899999999999988776555
No 9
>2ftc_I Mitochondrial ribosomal protein L16, 39S ribosomal protein L13, mitochondrial; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus} PDB: 3iy9_I
Probab=33.51 E-value=47 Score=27.59 Aligned_cols=36 Identities=19% Similarity=0.131 Sum_probs=28.3
Q ss_pred EEEEEecCCCCceEeccCCCCHHHHHHHHHHHHHHHhC
Q 038194 76 WVAEIREPRKRTRKWLGTFATAEDAARAYDRAAIILYG 113 (349)
Q Consensus 76 W~ArI~~~gkkKri~LGTFdTeEEAArAYDrAAikl~G 113 (349)
|+|+|.. +..-+-++...++|.|.+|..+|+.||=+
T Consensus 80 wva~Vk~--G~ilfEi~g~~~~~~a~eAlr~a~~KlP~ 115 (118)
T 2ftc_I 80 YVTPVKA--GRLVVEMGGRCEFEEVQGFLDQVAHKLPF 115 (118)
T ss_pred EEEEECC--CCEEEEEeccCCHHHHHHHHHHHHhhCCC
Confidence 9999986 44445566668899999999999998743
No 10
>1kcq_A Gelsolin, brevin, ADF, AGEL; alpha-beta structure, actin-binding protein, familial amyloi finnish type, cadmium binding, metal binding; 1.65A {Homo sapiens} SCOP: d.109.1.1
Probab=22.29 E-value=1.1e+02 Score=23.75 Aligned_cols=37 Identities=14% Similarity=0.127 Sum_probs=29.8
Q ss_pred CcEEEEEecCCCCceEeccCCCCHHHHHHHHHHHHHH
Q 038194 74 GKWVAEIREPRKRTRKWLGTFATAEDAARAYDRAAII 110 (349)
Q Consensus 74 GKW~ArI~~~gkkKri~LGTFdTeEEAArAYDrAAik 110 (349)
..--+.|.+.+....+|.|...+.+|.++|-+.|...
T Consensus 27 ns~d~FILd~g~~iyvW~G~~s~~~Ek~~A~~~a~~i 63 (104)
T 1kcq_A 27 NNGDCFILDLGNNIHQWCGSNSNRYERLKATQVSKGI 63 (104)
T ss_dssp CTTSEEEEECSSEEEEEECTTCCHHHHHHHHHHHHHH
T ss_pred CCCCeEEEeCCCEEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 3345677787788889999999999999998877544
Done!