BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 038195
         (172 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2I9Y|A Chain A, Solution Structure Of Arabidopsis Thaliana Protein
           At1g70830, A Member Of The Major Latex Protein Family
          Length = 166

 Score =  114 bits (285), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 64/172 (37%), Positives = 95/172 (55%), Gaps = 26/172 (15%)

Query: 1   METEVEIKSPADKFYNTFSSKAHTVPNMSPGNLHGVEVHEGDWESHGSVKSWTFSAGDFP 60
           +ET+VEIK+ ADKF++ F+ K H V   SPGN+ G ++HEGDW + GS+  W +   D  
Sbjct: 19  LETDVEIKASADKFHHMFAGKPHHVSKASPGNIQGCDLHEGDWGTVGSIVFWNY-VHDGE 77

Query: 61  ATRTEEQTQSSHLRGLHYQWSQHFVEKMKEKVELDPENKTVAMVVIEGDLMKHFKSYKVI 120
           A   +E+ ++                       ++P+   +   VIEGDLMK +KS+ + 
Sbjct: 78  AKVAKERIEA-----------------------VEPDKNLITFRVIEGDLMKEYKSFLLT 114

Query: 121 IKVIPK--SEGSLVKWIWEYEKLQEDGPTPSKYVDFVTDLTKNIDAHLLKEE 170
           I+V PK    GS+V W  EYEK+ E+   P   + F  +++K ID HLL EE
Sbjct: 115 IQVTPKPGGPGSIVHWHLEYEKISEEVAHPETLLQFCVEVSKEIDEHLLAEE 166


>pdb|1VJH|A Chain A, Crystal Structure Of Gene Product Of At1g24000 From
           Arabidopsis Thaliana
 pdb|1VJH|B Chain B, Crystal Structure Of Gene Product Of At1g24000 From
           Arabidopsis Thaliana
 pdb|2Q3Q|A Chain A, Ensemble Refinement Of The Protein Crystal Structure Of
           At1g24000 From Arabidopsis Thaliana
 pdb|2Q3Q|B Chain B, Ensemble Refinement Of The Protein Crystal Structure Of
           At1g24000 From Arabidopsis Thaliana
          Length = 122

 Score = 31.2 bits (69), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 22/76 (28%), Positives = 36/76 (47%), Gaps = 2/76 (2%)

Query: 94  LDPENKTVAMVVIEGDLMKHFKSYKVIIKVIP--KSEGSLVKWIWEYEKLQEDGPTPSKY 151
           +D   KT  +     ++ K+FK+ K  I V P    +GS V W + +EK+ +D   P   
Sbjct: 43  VDLVKKTXTIQXSGSEIQKYFKTLKGSIAVTPIGVGDGSHVVWTFHFEKVHKDIDDPHSI 102

Query: 152 VDFVTDLTKNIDAHLL 167
           +D      K +D  +L
Sbjct: 103 IDESVKYFKKLDEAIL 118


>pdb|2GWR|A Chain A, Crystal Structure Of The Response Regulator Protein Mtra
           From Mycobacterium Tuberculosis
          Length = 238

 Score = 28.1 bits (61), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 11/21 (52%), Positives = 16/21 (76%)

Query: 85  VEKMKEKVELDPENKTVAMVV 105
           V++++ KVE DPEN TV + V
Sbjct: 198 VQRLRAKVEKDPENPTVVLTV 218


>pdb|4B0T|A Chain A, Structure Of The Pup Ligase Pafa Of The Prokaryotic
           Ubiquitin-Like Modification Pathway In Complex With Adp
 pdb|4B0T|B Chain B, Structure Of The Pup Ligase Pafa Of The Prokaryotic
           Ubiquitin-Like Modification Pathway In Complex With Adp
          Length = 493

 Score = 27.7 bits (60), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 12/32 (37%), Positives = 15/32 (46%)

Query: 44  ESHGSVKSWTFSAGDFPATRTEEQTQSSHLRG 75
           +S G +K WT       A  T   T  +HLRG
Sbjct: 392 QSRGMIKRWTTDEAILAAVDTAPDTTRAHLRG 423


>pdb|2DOE|A Chain A, Solution Structure Of The Third Ff Domain Of Human
           Transcription Factor Ca150
          Length = 83

 Score = 26.9 bits (58), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 15/38 (39%), Positives = 20/38 (52%)

Query: 77  HYQWSQHFVEKMKEKVELDPENKTVAMVVIEGDLMKHF 114
           H+  SQ    K+K+KVE DP  K V    +  DL K +
Sbjct: 30  HHLDSQSRWSKVKDKVESDPRYKAVDSSSMREDLFKQY 67


>pdb|2WHL|A Chain A, Understanding How Diverse Mannanases Recognise
           Heterogeneous Substrates
          Length = 294

 Score = 26.2 bits (56), Expect = 9.4,   Method: Compositional matrix adjust.
 Identities = 10/26 (38%), Positives = 18/26 (69%)

Query: 79  QWSQHFVEKMKEKVELDPENKTVAMV 104
           QW +  ++ ++E +EL  +NK VA+V
Sbjct: 57  QWEKDDIDTIREVIELAEQNKMVAVV 82


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.312    0.129    0.385 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,815,998
Number of Sequences: 62578
Number of extensions: 240017
Number of successful extensions: 532
Number of sequences better than 100.0: 36
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 23
Number of HSP's that attempted gapping in prelim test: 513
Number of HSP's gapped (non-prelim): 39
length of query: 172
length of database: 14,973,337
effective HSP length: 92
effective length of query: 80
effective length of database: 9,216,161
effective search space: 737292880
effective search space used: 737292880
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 48 (23.1 bits)