Query 038195
Match_columns 172
No_of_seqs 109 out of 701
Neff 6.0
Searched_HMMs 46136
Date Fri Mar 29 08:33:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038195.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/038195hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00407 Bet_v_1: Pathogenesis 100.0 2.8E-42 6.1E-47 270.4 16.5 144 1-169 6-151 (151)
2 cd07816 Bet_v1-like Ligand-bin 100.0 2.5E-34 5.4E-39 223.2 19.1 141 1-168 3-147 (148)
3 cd07821 PYR_PYL_RCAR_like Pyra 99.7 6.5E-15 1.4E-19 108.7 15.7 132 1-166 3-139 (140)
4 cd08866 SRPBCC_11 Ligand-bindi 99.5 3E-12 6.5E-17 96.3 14.8 113 1-142 1-116 (144)
5 PF10604 Polyketide_cyc2: Poly 99.5 1.4E-11 3E-16 90.9 17.6 103 2-140 5-108 (139)
6 cd07819 SRPBCC_2 Ligand-bindin 99.4 1E-11 2.3E-16 92.0 15.9 112 1-143 4-115 (140)
7 cd08865 SRPBCC_10 Ligand-bindi 99.4 3E-11 6.6E-16 88.8 16.4 107 1-140 1-108 (140)
8 cd07813 COQ10p_like Coenzyme Q 99.3 3.8E-11 8.2E-16 90.3 12.3 109 1-143 1-110 (138)
9 cd08861 OtcD1_ARO-CYC_like N-t 99.3 2.5E-10 5.4E-15 85.6 15.7 111 1-143 1-113 (142)
10 cd07812 SRPBCC START/RHO_alpha 99.2 6.6E-10 1.4E-14 79.1 14.6 112 1-144 1-114 (141)
11 cd07820 SRPBCC_3 Ligand-bindin 99.1 2.1E-09 4.5E-14 81.2 13.3 109 1-141 1-112 (137)
12 cd07824 SRPBCC_6 Ligand-bindin 99.1 6.6E-09 1.4E-13 79.3 15.5 108 2-142 4-113 (146)
13 cd08860 TcmN_ARO-CYC_like N-te 99.1 6.6E-09 1.4E-13 80.7 15.6 111 2-143 4-115 (146)
14 cd07825 SRPBCC_7 Ligand-bindin 99.1 1.1E-08 2.4E-13 76.8 14.7 135 1-166 2-143 (144)
15 cd08862 SRPBCC_Smu440-like Lig 99.1 1.3E-08 2.8E-13 75.3 14.6 104 1-141 3-108 (138)
16 PF03364 Polyketide_cyc: Polyk 99.0 9E-09 2E-13 76.2 13.1 110 7-151 1-113 (130)
17 cd07822 SRPBCC_4 Ligand-bindin 99.0 7E-08 1.5E-12 71.0 16.3 108 1-141 2-112 (141)
18 cd05018 CoxG Carbon monoxide d 99.0 3.7E-08 8.1E-13 73.2 14.9 112 1-143 3-115 (144)
19 cd07814 SRPBCC_CalC_Aha1-like 99.0 1.4E-08 3.1E-13 75.0 11.6 110 1-142 2-112 (139)
20 cd07818 SRPBCC_1 Ligand-bindin 98.9 5E-08 1.1E-12 73.8 13.8 110 1-143 4-119 (150)
21 cd07817 SRPBCC_8 Ligand-bindin 98.9 4.4E-08 9.4E-13 72.5 13.0 104 1-143 2-108 (139)
22 PRK10724 hypothetical protein; 98.9 2.5E-08 5.5E-13 78.7 11.9 108 2-143 18-126 (158)
23 cd07823 SRPBCC_5 Ligand-bindin 98.8 3.1E-07 6.8E-12 70.0 14.4 114 1-144 1-117 (146)
24 COG3427 Carbon monoxide dehydr 98.4 8.6E-06 1.9E-10 64.0 12.8 137 1-168 3-145 (146)
25 cd08893 SRPBCC_CalC_Aha1-like_ 98.3 2.1E-05 4.6E-10 57.9 11.4 130 1-166 2-134 (136)
26 cd08899 SRPBCC_CalC_Aha1-like_ 98.2 2.5E-05 5.5E-10 60.5 11.5 125 2-170 14-139 (157)
27 PF06240 COXG: Carbon monoxide 98.2 8.3E-05 1.8E-09 56.8 13.9 131 4-166 2-139 (140)
28 cd08900 SRPBCC_CalC_Aha1-like_ 98.2 0.00025 5.5E-09 53.7 15.7 135 2-167 3-142 (143)
29 cd08894 SRPBCC_CalC_Aha1-like_ 98.1 7.5E-05 1.6E-09 56.4 11.6 133 1-167 2-138 (139)
30 cd08896 SRPBCC_CalC_Aha1-like_ 98.1 8.7E-05 1.9E-09 56.5 12.0 135 1-167 2-145 (146)
31 cd08895 SRPBCC_CalC_Aha1-like_ 98.1 0.00035 7.6E-09 53.2 15.0 140 2-167 3-145 (146)
32 cd08898 SRPBCC_CalC_Aha1-like_ 98.1 8.1E-05 1.8E-09 55.5 11.3 133 1-167 3-144 (145)
33 cd08897 SRPBCC_CalC_Aha1-like_ 98.0 0.00033 7.2E-09 52.5 13.3 127 1-167 2-132 (133)
34 cd07826 SRPBCC_CalC_Aha1-like_ 98.0 0.00021 4.6E-09 54.4 12.2 138 1-168 2-142 (142)
35 COG2867 Oligoketide cyclase/li 98.0 3.5E-05 7.6E-10 60.4 7.5 108 2-142 5-113 (146)
36 COG5637 Predicted integral mem 97.9 4.5E-05 9.8E-10 62.1 7.0 105 1-143 72-179 (217)
37 cd08891 SRPBCC_CalC Ligand-bin 97.8 0.001 2.2E-08 50.8 13.1 131 1-167 2-148 (149)
38 cd08876 START_1 Uncharacterize 97.7 0.0042 9E-08 49.3 15.8 117 2-143 44-169 (195)
39 cd08892 SRPBCC_Aha1 Putative h 97.4 0.0036 7.9E-08 46.7 11.3 121 1-166 2-124 (126)
40 PF08327 AHSA1: Activator of H 97.2 0.015 3.2E-07 42.0 12.0 121 8-166 1-123 (124)
41 cd08901 SRPBCC_CalC_Aha1-like_ 97.2 0.01 2.2E-07 44.6 11.2 122 2-168 3-132 (136)
42 COG3832 Uncharacterized conser 96.4 0.068 1.5E-06 41.4 10.9 29 1-30 10-38 (149)
43 PTZ00220 Activator of HSP-90 A 96.2 0.061 1.3E-06 40.7 9.1 119 7-167 1-127 (132)
44 cd08874 START_STARD9-like C-te 96.1 0.57 1.2E-05 38.5 15.3 121 3-146 49-181 (205)
45 cd08873 START_STARD14_15-like 96.1 0.71 1.5E-05 38.9 16.0 142 3-169 81-235 (235)
46 cd08863 SRPBCC_DUF1857 DUF1857 95.0 1.2 2.5E-05 34.9 12.7 110 10-161 18-130 (141)
47 PF08982 DUF1857: Domain of un 95.0 0.74 1.6E-05 36.2 11.6 108 10-159 19-130 (149)
48 cd08868 START_STARD1_3_like Ch 94.6 2 4.3E-05 34.6 15.6 141 3-167 52-206 (208)
49 PF10698 DUF2505: Protein of u 93.6 2.7 5.9E-05 32.7 14.2 125 2-143 2-130 (159)
50 cd08903 START_STARD5-like Lipi 93.5 3.4 7.4E-05 33.6 15.4 141 3-167 50-206 (208)
51 cd08913 START_STARD14-like Lip 93.5 4.1 8.9E-05 34.4 14.7 114 3-140 85-209 (240)
52 cd08869 START_RhoGAP C-termina 93.4 3.5 7.5E-05 33.2 13.6 114 3-143 48-170 (197)
53 cd08877 START_2 Uncharacterize 93.4 2.6 5.6E-05 34.1 12.2 138 3-166 50-212 (215)
54 cd00177 START Lipid-binding ST 92.8 3.5 7.5E-05 31.5 15.6 116 3-143 43-167 (193)
55 cd08914 START_STARD15-like Lip 92.8 5.4 0.00012 33.7 14.9 48 3-53 82-129 (236)
56 cd08905 START_STARD1-like Chol 92.8 4.6 9.9E-05 32.9 13.6 140 3-167 53-207 (209)
57 cd08906 START_STARD3-like Chol 90.7 8.1 0.00018 31.5 14.8 38 3-42 53-91 (209)
58 cd08870 START_STARD2_7-like Li 85.5 18 0.00038 29.2 15.6 138 3-167 54-207 (209)
59 cd08911 START_STARD7-like Lipi 85.1 19 0.00041 29.2 14.1 138 3-167 49-205 (207)
60 cd08908 START_STARD12-like C-t 84.1 22 0.00048 29.2 12.0 114 3-143 56-177 (204)
61 smart00234 START in StAR and p 79.9 27 0.00059 27.4 17.3 140 3-167 49-201 (206)
62 PF11485 DUF3211: Protein of u 77.4 27 0.00059 27.2 8.7 38 3-42 5-42 (136)
63 cd08872 START_STARD11-like Cer 77.2 41 0.0009 28.0 12.1 38 3-42 56-94 (235)
64 KOG3177 Oligoketide cyclase/li 76.8 16 0.00034 30.7 7.6 105 6-142 75-182 (227)
65 cd08871 START_STARD10-like Lip 73.3 47 0.001 26.8 15.2 116 3-143 51-175 (222)
66 COG4276 Uncharacterized conser 70.9 50 0.0011 26.1 11.1 115 3-143 6-120 (153)
67 PF11687 DUF3284: Domain of un 56.3 81 0.0018 23.4 9.3 47 90-142 56-104 (120)
68 cd08867 START_STARD4_5_6-like 49.1 1.3E+02 0.0029 23.8 15.3 140 3-166 50-205 (206)
69 PF10651 DUF2479: Domain of un 47.4 1.4E+02 0.0029 23.4 11.1 102 33-142 22-125 (170)
70 PF01852 START: START domain; 45.3 1.4E+02 0.0031 23.1 16.9 140 3-170 50-204 (206)
71 PLN00188 enhanced disease resi 43.7 3.3E+02 0.0072 26.9 15.4 150 2-170 230-394 (719)
72 KOG3309 Ferredoxin [Energy pro 33.7 25 0.00055 28.1 1.5 67 90-158 44-119 (159)
73 cd05845 Ig2_L1-CAM_like Second 29.9 1.7E+02 0.0036 21.0 5.2 18 25-42 2-19 (95)
74 cd08910 START_STARD2-like Lipi 27.9 3.2E+02 0.007 22.0 12.3 136 3-166 53-204 (207)
75 PF11619 P53_C: Transcription 24.9 2.4E+02 0.0052 19.5 5.3 44 120-172 6-50 (71)
76 PF14801 GCD14_N: tRNA methylt 24.7 20 0.00043 23.7 -0.5 22 89-110 9-31 (54)
77 PF02087 Nitrophorin: Nitropho 20.5 3.6E+02 0.0079 21.9 5.9 24 88-111 50-74 (178)
No 1
>PF00407 Bet_v_1: Pathogenesis-related protein Bet v I family; InterPro: IPR000916 Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Aln g 1, Api g 1, Bet v 1, Car b 1, Cor a 1, Dau c 1, Mal d 1 and Pru a 1. Trees within the order Fagales possess particularly potent allergens, e.g. Bet v1, the major White Birch (Betula verrucosa) pollen antigen. Bet v1 is the main cause of type I allergies observed in early spring. Type I, or immunoglobulin E-mediated (IgE-mediated) allergies affect 1 in 5 people in Europe and North America. Commonly-observed symptoms are hay fever, dermatitis, asthma and, in severe cases, anaphylactic shock. First contact with these allergens results in sensitisation; subsequent contact produces a cross-linking reaction of IgE on mast cells and concomitant release of histamine. The inevitable symptoms of an allergic reaction ensue. Recent NMR analysis [] has confirmed earlier predictions of the protein structure and site of the major T-cell epitope []. The Bet v1 protein comprises 6 anti-parallel beta-strands and 3 alpha-helices. Four of the strands dominate the global fold, and 2 of the helices form a C-terminal amphipathic helical motif. This motif is believed to be the T-cell epitope. Other proteins belonging to this family include the major pollen allergens: Aln g I from Alnus glutinosa (Alder); Api G I from Apium graveolens (Celery); Car b I from Carpinus betulus (European hornbeam); Cor a I from Corylus avellana (European hazel); Mal d I from Malus domestica (Apple). The motif is also found in: the wound-induced protein AoPR1 from Asparagus officinalis (Garden asparagus); pathogenesis-related proteins from Phaseolus vulgaris (Kidney bean) and Petroselinum crispum (Parsley) (PR1-1 and PR1-3); the disease resistance response proteins, STH-2 and STH-21, from Solanum tuberosum (Potato) and pI49, pI176 and DRRG49-C from Pisum sativum (Garden pea); the P. sativum abscisic acid-responsive proteins ABR17 and ABR18; and the stress-induced protein SAM22 from Glycine max (Soybean). ; GO: 0006952 defense response, 0009607 response to biotic stimulus; PDB: 1IFV_A 4A8V_A 4A8U_A 2K7H_A 2QIM_A 3E85_A 1H2O_A 1E09_A 1QMR_A 1FSK_D ....
Probab=100.00 E-value=2.8e-42 Score=270.37 Aligned_cols=144 Identities=48% Similarity=0.801 Sum_probs=133.9
Q ss_pred CceEEEEcCCHHHHHHHhhcCCcccCCcCCCCeeeEEEEecccCCCCcEEEEEeecCCCCCcccchhccccccccccccc
Q 038195 1 METEVEIKSPADKFYNTFSSKAHTVPNMSPGNLHGVEVHEGDWESHGSVKSWTFSAGDFPATRTEEQTQSSHLRGLHYQW 80 (172)
Q Consensus 1 ~~~e~~i~apa~kvw~~~~d~~~~lpk~~P~~v~sve~~eGd~g~~Gsvr~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~ 80 (172)
++.|+++++||+|+|+++++..+++||++|++|+||+++|||||..||||.|+|.++++
T Consensus 6 ~~~E~~~~~~a~k~~ka~~~~~~llpki~P~~i~sve~~eGdgg~gGSIk~~~f~~~~~--------------------- 64 (151)
T PF00407_consen 6 LEVEVEVKVSADKLWKAFKSSPHLLPKILPHVIKSVEVVEGDGGPGGSIKKWTFGPGGP--------------------- 64 (151)
T ss_dssp EEEEEEESS-HHHHHHHHTTHHHHHHHHSTTTEEEEEEEESSSSTTT-EEEEEEETTSS---------------------
T ss_pred EEEEEEecCCHHHHHHHHhcCccchhhhChhhceeEEEEccCCCCCCeEEEEEecCCCC---------------------
Confidence 46899999999999999998777999999999999999999964445999999999998
Q ss_pred ccceeeeeEEEEE-ecCCCceEEEEEEeCccccceeEEEEEEEEEecCCC-cEEEEEEEEEecCCCCCChhhhhHHHHHH
Q 038195 81 SQHFVEKMKEKVE-LDPENKTVAMVVIEGDLMKHFKSYKVIIKVIPKSEG-SLVKWIWEYEKLQEDGPTPSKYVDFVTDL 158 (172)
Q Consensus 81 ~~~~~~~~kEri~-~D~~~~~i~Y~vieGdl~~~~~s~~~t~~v~p~~dG-s~v~w~~~ye~~~~~~~~p~~~~~~~~~~ 158 (172)
.+++|||++ +|++|++|+|++||||++..|++|..++++.|+++| |+++|+++|+++++..++|+++++++..|
T Consensus 65 ----~~~~Kekve~~D~~~~~~~y~viEGd~l~~~~~~~~~~~~~~~~~g~~v~k~t~~Ye~~~~~~~~p~~~~~~~~~~ 140 (151)
T PF00407_consen 65 ----FKYVKEKVEAIDEENKTITYTVIEGDVLGDYKSFKSTIQKIPKGDGGCVVKWTIEYEKKGEDVPPPEKYLDFAVGM 140 (151)
T ss_dssp ----EEEEEEEEEEEETTTTEEEEEEEEETTGTTTEEEEEEEEEEEETTSCEEEEEEEEEEESSTSCHHHHHHHHHHHHH
T ss_pred ----cceeEEEEEeecCCCcEEEEEEEeccccccEEEEEEEEEecCCCCCceEEEEEEEEEecCCCCCCcHHHHHHHHHH
Confidence 889999999 999999999999999988889999999999999988 99999999999999998999999999999
Q ss_pred HHHHHHHHhhc
Q 038195 159 TKNIDAHLLKE 169 (172)
Q Consensus 159 ~k~ie~ylla~ 169 (172)
+|+||+||++|
T Consensus 141 ~K~ieayLlan 151 (151)
T PF00407_consen 141 FKAIEAYLLAN 151 (151)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHhcC
Confidence 99999999997
No 2
>cd07816 Bet_v1-like Ligand-binding bet_v_1 domain of major pollen allergen of white birch (Betula verrucosa), Bet v 1, and related proteins. This family includes the ligand binding domain of Bet v 1 (the major pollen allergen of white birch, Betula verrucosa) and related proteins. In addition to birch Bet v 1, this family includes other plant intracellular pathogenesis-related class 10 (PR-10) proteins, norcoclaurine synthases (NCSs), cytokinin binding proteins (CSBPs), major latex proteins (MLPs), and ripening-related proteins. It belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Members of this family binds a diverse range of ligands. Bet v 1 can bind brassinosteroids, cytokinins, flavonoids and fatty acids. Hyp-1, a PR-10 from Hypericum perforatum/St. John's wort, catalyzes the condensation of two molecules of emodin to the bioactive naphthodianth
Probab=100.00 E-value=2.5e-34 Score=223.20 Aligned_cols=141 Identities=40% Similarity=0.640 Sum_probs=129.2
Q ss_pred CceEEEEcCCHHHHHHHhhcCCcccCC-cCCCCeeeEEEEecccCCCCcEEEEEeecCCCCCcccchhcccccccccccc
Q 038195 1 METEVEIKSPADKFYNTFSSKAHTVPN-MSPGNLHGVEVHEGDWESHGSVKSWTFSAGDFPATRTEEQTQSSHLRGLHYQ 79 (172)
Q Consensus 1 ~~~e~~i~apa~kvw~~~~d~~~~lpk-~~P~~v~sve~~eGd~g~~Gsvr~~~~~~gg~~~~~~~~~~~~~~~~~~~~~ 79 (172)
++.+++|+|||+++|++++++.+.+|+ |+| .|++|++++|+ |++||||.|+|..|++
T Consensus 3 ~~~e~~i~a~ad~vW~~~~~~~~~~~~~~~p-~v~~~~~~eG~-~~~GsvR~~~~~~~~~-------------------- 60 (148)
T cd07816 3 LEHEVELKVPAEKLWKAFVLDSHLLPPKLPP-VIKSVELLEGD-GGPGSIKLITFGPGGK-------------------- 60 (148)
T ss_pred EEEEEEecCCHHHHHHHHhcChhhccccccc-cccEEEEEecC-CCCceEEEEEEcCCCc--------------------
Confidence 468999999999999999999754555 555 79999999999 7999999999998875
Q ss_pred cccceeeeeEEEEE-ecCCCceEEEEEEeCcccc-ceeEEEEEEEEEecCCC-cEEEEEEEEEecCCCCCChhhhhHHHH
Q 038195 80 WSQHFVEKMKEKVE-LDPENKTVAMVVIEGDLMK-HFKSYKVIIKVIPKSEG-SLVKWIWEYEKLQEDGPTPSKYVDFVT 156 (172)
Q Consensus 80 ~~~~~~~~~kEri~-~D~~~~~i~Y~vieGdl~~-~~~s~~~t~~v~p~~dG-s~v~w~~~ye~~~~~~~~p~~~~~~~~ 156 (172)
+++++|||+ +|+++|+++|+++||+++. .|++|+++++|.|.++| |+++|+++|++.++++++|+.+++++.
T Consensus 61 -----~~~~kE~l~~~D~~~~~~~y~vveg~~~~~~~~~y~~t~~v~~~~~~~t~v~Wt~~ye~~~~~~~~p~~~~~~~~ 135 (148)
T cd07816 61 -----VKYVKERIDAVDEENKTYKYTVIEGDVLKDGYKSYKVEIKFVPKGDGGCVVKWTIEYEKKGDAEPPEEEIKAGKE 135 (148)
T ss_pred -----ceEEEEEEEEEcccccEEEEEEEecccccCceEEEEEEEEEEECCCCCEEEEEEEEEEECCCCCCCHHHHHhHHH
Confidence 677999999 9999999999999999876 79999999999999766 999999999999999999999999999
Q ss_pred HHHHHHHHHHhh
Q 038195 157 DLTKNIDAHLLK 168 (172)
Q Consensus 157 ~~~k~ie~ylla 168 (172)
.++++++.|++.
T Consensus 136 ~~~~~~~~~~~~ 147 (148)
T cd07816 136 KALKMFKAVEAY 147 (148)
T ss_pred HHHHHHHHHHhc
Confidence 999999999875
No 3
>cd07821 PYR_PYL_RCAR_like Pyrabactin resistance 1 (PYR1), PYR1-like (PYL), regulatory component of abscisic acid receptors (RCARs), and related proteins. The PYR/PYL/RCAR-like family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. PYR/PYL/RCAR plant proteins are receptors involved in signal transduction. They bind abscisic acid (ABA) and mediate its signaling. ABA is a vital plant hormone, which regulates plant growth, development, and response to environmental stresses. Upon binding ABA, these plant proteins interact with a type 2C protein phosphatase (PP2C), such as ABI1 and ABI2, and inhibit their activity. When ABA is bound, a loop (designated the gate/CL2 loop) closes over the ligand binding pocket, resulting in the weakening of the inactive PYL dimer and facilitating type 2C protein phosphatase binding. In the ABA:PYL1:ABI1 complex, the gate
Probab=99.66 E-value=6.5e-15 Score=108.68 Aligned_cols=132 Identities=23% Similarity=0.397 Sum_probs=104.8
Q ss_pred CceEEEEcCCHHHHHHHhhcCCcccCCcCCCCeeeEEEEecccCCCCcEEEEEeecCCCCCcccchhccccccccccccc
Q 038195 1 METEVEIKSPADKFYNTFSSKAHTVPNMSPGNLHGVEVHEGDWESHGSVKSWTFSAGDFPATRTEEQTQSSHLRGLHYQW 80 (172)
Q Consensus 1 ~~~e~~i~apa~kvw~~~~d~~~~lpk~~P~~v~sve~~eGd~g~~Gsvr~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~ 80 (172)
++.+++|+||++++|+++.|.. .+++|+|. +++++++++++ ++|+++.+.+..|..
T Consensus 3 i~~~~~i~a~~~~V~~~l~d~~-~~~~w~~~-~~~~~~~~~~~-~~g~~~~~~~~~g~~--------------------- 58 (140)
T cd07821 3 VTVSVTIDAPADKVWALLSDFG-GLHKWHPA-VASCELEGGGP-GVGAVRTVTLKDGGT--------------------- 58 (140)
T ss_pred EEEEEEECCCHHHHHHHHhCcC-chhhhccC-cceEEeecCCC-CCCeEEEEEeCCCCE---------------------
Confidence 3678999999999999999985 78999996 88999988763 789999998865432
Q ss_pred ccceeeeeEEEEE-ecCCCceEEEEEEeCccccceeEEEEEEEEEecCC-CcEEEEEEEEEecCCCCCChh---hhhHHH
Q 038195 81 SQHFVEKMKEKVE-LDPENKTVAMVVIEGDLMKHFKSYKVIIKVIPKSE-GSLVKWIWEYEKLQEDGPTPS---KYVDFV 155 (172)
Q Consensus 81 ~~~~~~~~kEri~-~D~~~~~i~Y~vieGdl~~~~~s~~~t~~v~p~~d-Gs~v~w~~~ye~~~~~~~~p~---~~~~~~ 155 (172)
+++++. +|+.+..+.|++++|+. .+.++..+++++|.++ ||.|+|+.+|++.+. .+.+. .+.+..
T Consensus 59 -------~~~~i~~~~~~~~~i~~~~~~~~~--~~~~~~~~~~~~~~~~~~t~v~~~~~~~~~~~-~~~~~~~~~~~~~~ 128 (140)
T cd07821 59 -------VRERLLALDDAERRYSYRIVEGPL--PVKNYVATIRVTPEGDGGTRVTWTAEFDPPEG-LTDELARAFLTGVY 128 (140)
T ss_pred -------EEEEehhcCccCCEEEEEecCCCC--CcccceEEEEEEECCCCccEEEEEEEEecCCC-cchHHHHHHHHHHH
Confidence 678899 99888899999998853 3567889999999988 499999999999876 22221 123456
Q ss_pred HHHHHHHHHHH
Q 038195 156 TDLTKNIDAHL 166 (172)
Q Consensus 156 ~~~~k~ie~yl 166 (172)
...++.|.++|
T Consensus 129 ~~~l~~L~~~~ 139 (140)
T cd07821 129 RAGLAALKAAL 139 (140)
T ss_pred HHHHHHHHHhh
Confidence 66667777665
No 4
>cd08866 SRPBCC_11 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.47 E-value=3e-12 Score=96.31 Aligned_cols=113 Identities=15% Similarity=0.279 Sum_probs=81.9
Q ss_pred CceEEEEcCCHHHHHHHhhcCCcccCCcCCCCeeeEEEEecccCCCCcEEEEEeecCCCCCcccchhccccccccccccc
Q 038195 1 METEVEIKSPADKFYNTFSSKAHTVPNMSPGNLHGVEVHEGDWESHGSVKSWTFSAGDFPATRTEEQTQSSHLRGLHYQW 80 (172)
Q Consensus 1 ~~~e~~i~apa~kvw~~~~d~~~~lpk~~P~~v~sve~~eGd~g~~Gsvr~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~ 80 (172)
++.++.|+||++++|+++.|+. ..|+|+|. +++++++++++ .+....+....+.. + +
T Consensus 1 ~~~~~~i~a~~~~Vw~~l~D~~-~~~~w~p~-v~~~~~l~~~~--~~~~~~~~~~~~~~-----------------~--~ 57 (144)
T cd08866 1 VVARVRVPAPPETVWAVLTDYD-NLAEFIPN-LAESRLLERNG--NRVVLEQTGKQGIL-----------------F--F 57 (144)
T ss_pred CeEEEEECCCHHHHHHHHhChh-hHHhhCcC-ceEEEEEEcCC--CEEEEEEeeeEEEE-----------------e--e
Confidence 4688999999999999999996 78999996 99999998752 22211111000000 0 0
Q ss_pred ccceeeeeEEEEE-ecCCCceEEEEEEeCccccceeEEEEEEEEEecCC-C-cEEEEEEEEEecC
Q 038195 81 SQHFVEKMKEKVE-LDPENKTVAMVVIEGDLMKHFKSYKVIIKVIPKSE-G-SLVKWIWEYEKLQ 142 (172)
Q Consensus 81 ~~~~~~~~kEri~-~D~~~~~i~Y~vieGdl~~~~~s~~~t~~v~p~~d-G-s~v~w~~~ye~~~ 142 (172)
.....+..++. .++.++.+.|++++|++ ..|.++++++|.++ | |.++|.+.+++..
T Consensus 58 --~~~~~v~~~~~~~~~~~~~i~~~~~~g~~----~~~~g~w~~~~~~~~~~t~v~~~~~~~~~~ 116 (144)
T cd08866 58 --KFEARVVLELREREEFPRELDFEMVEGDF----KRFEGSWRLEPLADGGGTLLTYEVEVKPDF 116 (144)
T ss_pred --eeeEEEEEEEEEecCCCceEEEEEcCCch----hceEEEEEEEECCCCCeEEEEEEEEEEeCC
Confidence 00122445566 66668999999998864 78899999999987 4 9999999999876
No 5
>PF10604 Polyketide_cyc2: Polyketide cyclase / dehydrase and lipid transport; InterPro: IPR019587 This family contains polyketide cylcases/dehydrases which are enzymes involved in polyketide synthesis. It also includes other proteins of the START superfamily []. ; PDB: 3QRZ_C 3CNW_A 3P9V_A 3OQU_B 3NEF_B 3JRQ_B 3KAY_A 3JRS_A 3KDJ_A 3NMN_C ....
Probab=99.46 E-value=1.4e-11 Score=90.86 Aligned_cols=103 Identities=21% Similarity=0.445 Sum_probs=82.6
Q ss_pred ceEEEEcCCHHHHHHHhhcCCcccCCcCCCCeeeEEEEecccCCCCcEEEEEeecCCCCCcccchhcccccccccccccc
Q 038195 2 ETEVEIKSPADKFYNTFSSKAHTVPNMSPGNLHGVEVHEGDWESHGSVKSWTFSAGDFPATRTEEQTQSSHLRGLHYQWS 81 (172)
Q Consensus 2 ~~e~~i~apa~kvw~~~~d~~~~lpk~~P~~v~sve~~eGd~g~~Gsvr~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~ 81 (172)
+.++.|+||++++|+++.|.. .+|+|+|. +.++++.+++ ++|..+.++. .|.
T Consensus 5 ~~~~~v~a~~e~V~~~l~d~~-~~~~w~~~-~~~~~~~~~~--~~~~~~~~~~--~g~---------------------- 56 (139)
T PF10604_consen 5 EVSIEVPAPPEAVWDLLSDPE-NWPRWWPG-VKSVELLSGG--GPGTERTVRV--AGR---------------------- 56 (139)
T ss_dssp EEEEEESS-HHHHHHHHTTTT-GGGGTSTT-EEEEEEEEEC--STEEEEEEEE--CSC----------------------
T ss_pred EEEEEECCCHHHHHHHHhChh-hhhhhhhc-eEEEEEcccc--ccceeEEEEe--ccc----------------------
Confidence 678999999999999999985 78999996 9999988744 3455555553 331
Q ss_pred cceeeeeEEEEE-ecCCCceEEEEEEeCccccceeEEEEEEEEEecCCCcEEEEEEEEEe
Q 038195 82 QHFVEKMKEKVE-LDPENKTVAMVVIEGDLMKHFKSYKVIIKVIPKSEGSLVKWIWEYEK 140 (172)
Q Consensus 82 ~~~~~~~kEri~-~D~~~~~i~Y~vieGdl~~~~~s~~~t~~v~p~~dGs~v~w~~~ye~ 140 (172)
..+.+++. +|++++.+.|++. ...+..+..++++.|.++||.++|+.+|++
T Consensus 57 ----~~~~~~i~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~gt~v~~~~~~~~ 108 (139)
T PF10604_consen 57 ----GTVREEITEYDPEPRRITWRFV----PSGFTNGTGRWRFEPVGDGTRVTWTVEFEP 108 (139)
T ss_dssp ----SEEEEEEEEEETTTTEEEEEEE----SSSSCEEEEEEEEEEETTTEEEEEEEEEEE
T ss_pred ----cceeEEEEEecCCCcEEEEEEE----ecceeEEEEEEEEEEcCCCEEEEEEEEEEE
Confidence 12778888 9988999999996 223567889999999999999999999998
No 6
>cd07819 SRPBCC_2 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.44 E-value=1e-11 Score=92.03 Aligned_cols=112 Identities=20% Similarity=0.258 Sum_probs=81.7
Q ss_pred CceEEEEcCCHHHHHHHhhcCCcccCCcCCCCeeeEEEEecccCCCCcEEEEEeecCCCCCcccchhccccccccccccc
Q 038195 1 METEVEIKSPADKFYNTFSSKAHTVPNMSPGNLHGVEVHEGDWESHGSVKSWTFSAGDFPATRTEEQTQSSHLRGLHYQW 80 (172)
Q Consensus 1 ~~~e~~i~apa~kvw~~~~d~~~~lpk~~P~~v~sve~~eGd~g~~Gsvr~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~ 80 (172)
++.++.|+||++++|+++.|.. .+|+|+|. +.++++++++.++.+....+++..++.
T Consensus 4 v~~s~~i~ap~e~V~~~l~D~~-~~~~w~p~-~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------- 60 (140)
T cd07819 4 VSREFEIEAPPAAVMDVLADVE-AYPEWSPK-VKSVEVLLRDNDGRPEMVRIGVGAYGI--------------------- 60 (140)
T ss_pred EEEEEEEeCCHHHHHHHHhChh-hhhhhCcc-eEEEEEeccCCCCCEEEEEEEEeeeeE---------------------
Confidence 3678999999999999999995 79999996 999999776423333333444432221
Q ss_pred ccceeeeeEEEEEecCCCceEEEEEEeCccccceeEEEEEEEEEecCCCcEEEEEEEEEecCC
Q 038195 81 SQHFVEKMKEKVELDPENKTVAMVVIEGDLMKHFKSYKVIIKVIPKSEGSLVKWIWEYEKLQE 143 (172)
Q Consensus 81 ~~~~~~~~kEri~~D~~~~~i~Y~vieGdl~~~~~s~~~t~~v~p~~dGs~v~w~~~ye~~~~ 143 (172)
.....-+++.++ .+.++|+..+|. ...++..+++++|.++||.|+|..++++...
T Consensus 61 ----~~~~~~~~~~~~-~~~i~~~~~~~~---~~~~~~~~~~~~~~~~~t~vt~~~~~~~~~~ 115 (140)
T cd07819 61 ----KDTYALEYTWDG-AGSVSWTLVEGE---GNRSQEGSYTLTPKGDGTRVTFDLTVELTVP 115 (140)
T ss_pred ----EEEEEEEEEEcC-CCcEEEEEeccc---ceeEEEEEEEEEECCCCEEEEEEEEEEecCC
Confidence 111122333444 678999999876 2567888999999999999999999998664
No 7
>cd08865 SRPBCC_10 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.41 E-value=3e-11 Score=88.77 Aligned_cols=107 Identities=16% Similarity=0.220 Sum_probs=84.9
Q ss_pred CceEEEEcCCHHHHHHHhhcCCcccCCcCCCCeeeEEEEecccCCCCcEEEEEeecCCCCCcccchhccccccccccccc
Q 038195 1 METEVEIKSPADKFYNTFSSKAHTVPNMSPGNLHGVEVHEGDWESHGSVKSWTFSAGDFPATRTEEQTQSSHLRGLHYQW 80 (172)
Q Consensus 1 ~~~e~~i~apa~kvw~~~~d~~~~lpk~~P~~v~sve~~eGd~g~~Gsvr~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~ 80 (172)
++.++.|+||++++|+++.|+. .+|+|+|. +.+++.+.++..++|+...+....++.
T Consensus 1 ~~~~~~i~ap~~~Vw~~l~d~~-~~~~w~~~-~~~~~~~~~~~~~~g~~~~~~~~~~g~--------------------- 57 (140)
T cd08865 1 VEESIVIERPVEEVFAYLADFE-NAPEWDPG-VVEVEKITDGPVGVGTRYHQVRKFLGR--------------------- 57 (140)
T ss_pred CceEEEEcCCHHHHHHHHHCcc-chhhhccC-ceEEEEcCCCCCcCccEEEEEEEecCc---------------------
Confidence 4678999999999999999985 78999996 788888765434789988887654443
Q ss_pred ccceeeeeEEEEE-ecCCCceEEEEEEeCccccceeEEEEEEEEEecCCCcEEEEEEEEEe
Q 038195 81 SQHFVEKMKEKVE-LDPENKTVAMVVIEGDLMKHFKSYKVIIKVIPKSEGSLVKWIWEYEK 140 (172)
Q Consensus 81 ~~~~~~~~kEri~-~D~~~~~i~Y~vieGdl~~~~~s~~~t~~v~p~~dGs~v~w~~~ye~ 140 (172)
...+++++. +| +++.+.|...+|.+ .+..++.+.|.++||.++|+.+|+.
T Consensus 58 ----~~~~~~~v~~~~-p~~~~~~~~~~~~~-----~~~~~~~~~~~~~~t~v~~~~~~~~ 108 (140)
T cd08865 58 ----RIELTYEITEYE-PGRRVVFRGSSGPF-----PYEDTYTFEPVGGGTRVRYTAELEP 108 (140)
T ss_pred ----eEEEEEEEEEec-CCcEEEEEecCCCc-----ceEEEEEEEEcCCceEEEEEEEEcc
Confidence 223578888 77 55789999876643 2678899999988899999999987
No 8
>cd07813 COQ10p_like Coenzyme Q-binding protein COQ10p and similar proteins. Coenzyme Q-binding protein COQ10p and similar proteins. COQ10p is a hydrophobic protein located in the inner membrane of mitochondria that binds coenzyme Q (CoQ), also called ubiquinone, which is an essential electron carrier of the respiratory chain. Deletion of the gene encoding COQ10p (COQ10 or YOL008W) in Saccharomyces cerevisiae results in respiratory defect because of the inability to oxidize NADH and succinate. COQ10p may function in the delivery of CoQ (Q6 in budding yeast) to its proper location for electron transport. The human homolog, called Q-binding protein COQ10 homolog A (COQ10A), is able to fully complement for the absence of COQ10p in fission yeast. Human COQ10A also has a splice variant COQ10B. COQ10p belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and the
Probab=99.32 E-value=3.8e-11 Score=90.31 Aligned_cols=109 Identities=18% Similarity=0.259 Sum_probs=84.7
Q ss_pred CceEEEEcCCHHHHHHHhhcCCcccCCcCCCCeeeEEEEecccCCCCcEEEEEeecCCCCCcccchhccccccccccccc
Q 038195 1 METEVEIKSPADKFYNTFSSKAHTVPNMSPGNLHGVEVHEGDWESHGSVKSWTFSAGDFPATRTEEQTQSSHLRGLHYQW 80 (172)
Q Consensus 1 ~~~e~~i~apa~kvw~~~~d~~~~lpk~~P~~v~sve~~eGd~g~~Gsvr~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~ 80 (172)
++.++.|+||++.+|+++.|.. .+|+|+|. +++++++++++ .+....++...++.
T Consensus 1 ~~~s~~i~ap~~~v~~~i~D~~-~~~~~~p~-~~~~~vl~~~~--~~~~~~~~~~~~~~--------------------- 55 (138)
T cd07813 1 YSKSRLVPYSAEQMFDLVADVE-RYPEFLPW-CTASRVLERDE--DELEAELTVGFGGI--------------------- 55 (138)
T ss_pred CeEEEEcCCCHHHHHHHHHHHH-hhhhhcCC-ccccEEEEcCC--CEEEEEEEEeeccc---------------------
Confidence 4678999999999999999995 79999996 99999999762 34444455444332
Q ss_pred ccceeeeeEEEEEecCCCceEEEEEEeCccccceeEEEEEEEEEecCCC-cEEEEEEEEEecCC
Q 038195 81 SQHFVEKMKEKVELDPENKTVAMVVIEGDLMKHFKSYKVIIKVIPKSEG-SLVKWIWEYEKLQE 143 (172)
Q Consensus 81 ~~~~~~~~kEri~~D~~~~~i~Y~vieGdl~~~~~s~~~t~~v~p~~dG-s~v~w~~~ye~~~~ 143 (172)
...+..++.+++ .++|++..++|. ++.+.++|++.|.++| |.|++.+.|++.++
T Consensus 56 ----~~~~~~~~~~~~-~~~i~~~~~~g~----~~~~~g~w~~~p~~~~~T~v~~~~~~~~~~~ 110 (138)
T cd07813 56 ----RESFTSRVTLVP-PESIEAELVDGP----FKHLEGEWRFKPLGENACKVEFDLEFEFKSR 110 (138)
T ss_pred ----cEEEEEEEEecC-CCEEEEEecCCC----hhhceeEEEEEECCCCCEEEEEEEEEEECCH
Confidence 222345666766 668899999884 4778899999999866 99999999999863
No 9
>cd08861 OtcD1_ARO-CYC_like N-terminal and C-terminal aromatase/cyclase domains of Streptomyces rimosus OtcD1 and related domains. This family includes the N- and C- terminal aromatase/cyclase (ARO/CYC) domains of Streptomyces rimosus OtcD1 and related domains. It belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. ARO/CYC domains participate in the diversification of aromatic polyketides by promoting polyketide cyclization. They occur in two architectural forms, didomain and monodomain. Didomain aromatase/cyclases (ARO/CYCs), contain two ARO/CYC domains, and are associated with C7-C12 first ring cyclized polyketides. Streptomyces rimosus OtcD1 is a didomain ARO/CYC. The polyketide Oxytetracycline (OTC) is a broad spectrum antibiotic made by Streptomyces rimosus. The gene encoding OtcD1 is part of oxytetracycline (OTC) gene cluster. Disruption of this
Probab=99.30 E-value=2.5e-10 Score=85.63 Aligned_cols=111 Identities=19% Similarity=0.236 Sum_probs=80.2
Q ss_pred CceEEEEcCCHHHHHHHhhcCCcccCCcCCCCeeeEEEEecccCCCCcEEEEEeecCCCCCcccchhccccccccccccc
Q 038195 1 METEVEIKSPADKFYNTFSSKAHTVPNMSPGNLHGVEVHEGDWESHGSVKSWTFSAGDFPATRTEEQTQSSHLRGLHYQW 80 (172)
Q Consensus 1 ~~~e~~i~apa~kvw~~~~d~~~~lpk~~P~~v~sve~~eGd~g~~Gsvr~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~ 80 (172)
++.++.|+||++++|+++.|+. ..|+|+|. .++++++++ ++...++.+....+|. .
T Consensus 1 ~~~s~~i~ap~~~V~~~l~D~~-~~p~~~p~--~~~~~~~~~-~~~~~~~~~~~~~~g~-----------------~--- 56 (142)
T cd08861 1 VEHSVTVAAPAEDVYDLLADAE-RWPEFLPT--VHVERLELD-GGVERLRMWATAFDGS-----------------V--- 56 (142)
T ss_pred CeEEEEEcCCHHHHHHHHHhHH-hhhccCCC--ceEEEEEEc-CCEEEEEEEEEcCCCc-----------------E---
Confidence 4688999999999999999996 78999996 566666653 1112355454432222 0
Q ss_pred ccceeeeeEEEEE-ecCCCceEEEEEEeCccccceeEEEEEEEEEecCCC-cEEEEEEEEEecCC
Q 038195 81 SQHFVEKMKEKVE-LDPENKTVAMVVIEGDLMKHFKSYKVIIKVIPKSEG-SLVKWIWEYEKLQE 143 (172)
Q Consensus 81 ~~~~~~~~kEri~-~D~~~~~i~Y~vieGdl~~~~~s~~~t~~v~p~~dG-s~v~w~~~ye~~~~ 143 (172)
..+ +... +|++.+.|.|..+++.- .+..+.++++|+|.++| |.|+|..+|+....
T Consensus 57 ----~~~--~~~~~~~~~~~~i~~~~~~~~~--~~~~~~g~w~~~~~~~~~t~Vt~~~~~~~~~~ 113 (142)
T cd08861 57 ----HTW--TSRRVLDPEGRRIVFRQEEPPP--PVASMSGEWRFEPLGGGGTRVTLRHDFTLGID 113 (142)
T ss_pred ----EEE--EEEEEEcCCCCEEEEEEeeCCC--ChhhheeEEEEEECCCCcEEEEEEEEEEECCC
Confidence 222 3344 88888899999988431 24778889999999855 99999999998864
No 10
>cd07812 SRPBCC START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC (SRPBCC) ligand-binding domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket; they bind diverse ligands. Included in this superfamily are the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, and the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), as well as the SRPBCC domains of phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of this superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.24 E-value=6.6e-10 Score=79.07 Aligned_cols=112 Identities=23% Similarity=0.292 Sum_probs=88.1
Q ss_pred CceEEEEcCCHHHHHHHhhcCCcccCCcCCCCeeeEEEEecccCCCCcEEEEEeecCCCCCcccchhccccccccccccc
Q 038195 1 METEVEIKSPADKFYNTFSSKAHTVPNMSPGNLHGVEVHEGDWESHGSVKSWTFSAGDFPATRTEEQTQSSHLRGLHYQW 80 (172)
Q Consensus 1 ~~~e~~i~apa~kvw~~~~d~~~~lpk~~P~~v~sve~~eGd~g~~Gsvr~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~ 80 (172)
++.++.|+||++++|+++.|.. .+++|+|. +.++++.++.....|....+.+. ++.
T Consensus 1 ~~~~~~i~a~~~~v~~~l~d~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~--------------------- 56 (141)
T cd07812 1 VEASIEIPAPPEAVWDLLSDPE-RWPEWSPG-LERVEVLGGGEGGVGARFVGGRK-GGR--------------------- 56 (141)
T ss_pred CcEEEEeCCCHHHHHHHHhChh-hhhhhCcc-cceEEEcCCCCccceeEEEEEec-CCc---------------------
Confidence 4678999999999999999985 78999997 88888887653466776666654 222
Q ss_pred ccceeeeeEEEEE-ecCCCceEEEEEEeCccccceeEEEEEEEEEecCC-CcEEEEEEEEEecCCC
Q 038195 81 SQHFVEKMKEKVE-LDPENKTVAMVVIEGDLMKHFKSYKVIIKVIPKSE-GSLVKWIWEYEKLQED 144 (172)
Q Consensus 81 ~~~~~~~~kEri~-~D~~~~~i~Y~vieGdl~~~~~s~~~t~~v~p~~d-Gs~v~w~~~ye~~~~~ 144 (172)
......++. +++ +..++|+...++.. ..+..++.+.+.++ ||.++|+..+......
T Consensus 57 ----~~~~~~~v~~~~~-~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~t~v~~~~~~~~~~~~ 114 (141)
T cd07812 57 ----RLTLTSEVTEVDP-PRPGRFRVTGGGGG---VDGTGEWRLEPEGDGGTRVTYTVEYDPPGPL 114 (141)
T ss_pred ----cccceEEEEEecC-CCceEEEEecCCCC---cceeEEEEEEECCCCcEEEEEEEEEecCCcc
Confidence 123567888 766 77899999987764 57888999999988 7999999999988754
No 11
>cd07820 SRPBCC_3 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.13 E-value=2.1e-09 Score=81.23 Aligned_cols=109 Identities=13% Similarity=0.191 Sum_probs=84.4
Q ss_pred CceEEEEcCCHHHHHHHhhcCCcccCCcCCCCeeeEEEEecccC--CCCcEEEEEeecCCCCCcccchhccccccccccc
Q 038195 1 METEVEIKSPADKFYNTFSSKAHTVPNMSPGNLHGVEVHEGDWE--SHGSVKSWTFSAGDFPATRTEEQTQSSHLRGLHY 78 (172)
Q Consensus 1 ~~~e~~i~apa~kvw~~~~d~~~~lpk~~P~~v~sve~~eGd~g--~~Gsvr~~~~~~gg~~~~~~~~~~~~~~~~~~~~ 78 (172)
++.++.|+||+++||+.+.|.. ++|+|+|+ +.++++++.+++ .+|+.-.+.+...+. .
T Consensus 1 ~~~s~~I~ap~e~V~~~~~d~~-~~~~~~p~-~~~v~~~~~~~~~~~~G~~~~~~~~~~~~-----------------~- 60 (137)
T cd07820 1 LERSTVIPAPIEEVFDFHSRPD-NLERLTPP-WLEFAVLGRTPGLIYGGARVTYRLRHFGI-----------------P- 60 (137)
T ss_pred CeEEEEcCCCHHHHHHHHcCcc-hHHhcCCC-CCCeEEEecCCCcccCCcEEEEEEEecCC-----------------c-
Confidence 5789999999999999999986 79999997 889999853322 468888888776654 1
Q ss_pred ccccceeeeeEEEEE-ecCCCceEEEEEEeCccccceeEEEEEEEEEecCCCcEEEEEEEEEec
Q 038195 79 QWSQHFVEKMKEKVE-LDPENKTVAMVVIEGDLMKHFKSYKVIIKVIPKSEGSLVKWIWEYEKL 141 (172)
Q Consensus 79 ~~~~~~~~~~kEri~-~D~~~~~i~Y~vieGdl~~~~~s~~~t~~v~p~~dGs~v~w~~~ye~~ 141 (172)
.++ +-++. ++ .++.+++..+.|. +.++..+..++|.++||.+++.++|+..
T Consensus 61 ------~~w-~~~it~~~-p~~~f~~~~~~G~----~~~w~h~~~f~~~~~gT~vt~~v~~~~p 112 (137)
T cd07820 61 ------QRW-TTEITEVE-PPRRFVDEQVSGP----FRSWRHTHRFEAIGGGTLMTDRVEYRLP 112 (137)
T ss_pred ------eEE-EEEEEEEc-CCCeEEEEeccCC----chhCEEEEEEEECCCceEEEEEEEEeCC
Confidence 222 44455 55 4556888888765 3667788899998889999999999983
No 12
>cd07824 SRPBCC_6 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.11 E-value=6.6e-09 Score=79.26 Aligned_cols=108 Identities=19% Similarity=0.323 Sum_probs=77.1
Q ss_pred ceEEEEcCCHHHHHHHhhcCCcccCCcCCCCeeeEEEEe-cccCCCCcEEEEEeecC-CCCCcccchhcccccccccccc
Q 038195 2 ETEVEIKSPADKFYNTFSSKAHTVPNMSPGNLHGVEVHE-GDWESHGSVKSWTFSAG-DFPATRTEEQTQSSHLRGLHYQ 79 (172)
Q Consensus 2 ~~e~~i~apa~kvw~~~~d~~~~lpk~~P~~v~sve~~e-Gd~g~~Gsvr~~~~~~g-g~~~~~~~~~~~~~~~~~~~~~ 79 (172)
+.+..|+||+++||+++.|.. .+|+|+|. ++++++++ |++.+.|+..+...... +.
T Consensus 4 ~~~~~i~ap~e~Vw~~~tD~~-~~~~w~~~-v~~~~~~~~~~~~~~g~~~~~~~~~~~~~-------------------- 61 (146)
T cd07824 4 HTVWRIPAPPEAVWDVLVDAE-SWPDWWPG-VERVVELEPGDEAGIGARRRYTWRGLLPY-------------------- 61 (146)
T ss_pred eEEEEecCCHHHHHHHHhChh-hcchhhhc-eEEEEEccCCCCCCcceEEEEEEEecCCc--------------------
Confidence 567899999999999999985 89999996 99999987 34346777765443221 11
Q ss_pred cccceeeeeEEEEEecCCCceEEEEEEeCccccceeEEEEEEEEEecCCCcEEEEEEEEEecC
Q 038195 80 WSQHFVEKMKEKVELDPENKTVAMVVIEGDLMKHFKSYKVIIKVIPKSEGSLVKWIWEYEKLQ 142 (172)
Q Consensus 80 ~~~~~~~~~kEri~~D~~~~~i~Y~vieGdl~~~~~s~~~t~~v~p~~dGs~v~w~~~ye~~~ 142 (172)
.-...-++.-.+..+.+.|+. +|++. ...+++|+|.++||.|+++.+++..+
T Consensus 62 -----~~~~~~~v~~~~p~~~~~~~~-~g~~~-----~~~~~~~~~~~~gt~vt~~~~~~~~~ 113 (146)
T cd07824 62 -----RLRFELRVTRIEPLSLLEVRA-SGDLE-----GVGRWTLAPDGSGTVVRYDWEVRTTK 113 (146)
T ss_pred -----EEEEEEEEEeecCCcEEEEEE-EEeee-----EEEEEEEEEcCCCEEEEEEEEEEcCH
Confidence 011223344224566788874 66642 25788999988889999999999865
No 13
>cd08860 TcmN_ARO-CYC_like N-terminal aromatase/cyclase domain of the multifunctional protein tetracenomycin (TcmN) and related domains. This family includes the N-terminal aromatase/cyclase (ARO/CYC) domain of Streptomyces glaucescens TcmN, and related domains. It belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. ARO/CYC domains participate in the diversification of aromatic polyketides by promoting polyketide cyclization. They occur in two architectural forms, monodomain and didomain. Monodomain aromatase/cyclases have a single ARO/CYC domain. For some, such as TcmN, this single domain is linked to a second domain of unrelated function. TcmN is a multifunctional cyclase-dehydratase-O-methyl transferase. Its N-terminal ARO/CYC domain participates in polyketide binding and catalysis; it promotes C9-C14 first-ring (and C7-C16 second-ring) cyclizations.
Probab=99.11 E-value=6.6e-09 Score=80.65 Aligned_cols=111 Identities=22% Similarity=0.300 Sum_probs=81.0
Q ss_pred ceEEEEcCCHHHHHHHhhcCCcccCCcCCCCeeeEEEEecccCCCCcEEEEEeecCCCCCcccchhcccccccccccccc
Q 038195 2 ETEVEIKSPADKFYNTFSSKAHTVPNMSPGNLHGVEVHEGDWESHGSVKSWTFSAGDFPATRTEEQTQSSHLRGLHYQWS 81 (172)
Q Consensus 2 ~~e~~i~apa~kvw~~~~d~~~~lpk~~P~~v~sve~~eGd~g~~Gsvr~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~ 81 (172)
+.+++|+|||+.+|+++.|.. ..|.|+|. ++++++++.++.+.|+--++.+..+|. .+
T Consensus 4 ~~si~i~a~~~~v~~lvaDv~-~~P~~~~~-~~~~~~l~~~~~~~~~r~~i~~~~~g~-----------------~~--- 61 (146)
T cd08860 4 DNSIVIDAPLDLVWDMTNDIA-TWPDLFSE-YAEAEVLEEDGDTVRFRLTMHPDANGT-----------------VW--- 61 (146)
T ss_pred eeEEEEcCCHHHHHHHHHhhh-hhhhhccc-eEEEEEEEecCCeEEEEEEEEeccCCE-----------------EE---
Confidence 578999999999999999986 78999996 999999886533455322223322332 12
Q ss_pred cceeeeeEEEEEecCCCceEEEE-EEeCccccceeEEEEEEEEEecCCCcEEEEEEEEEecCC
Q 038195 82 QHFVEKMKEKVELDPENKTVAMV-VIEGDLMKHFKSYKVIIKVIPKSEGSLVKWIWEYEKLQE 143 (172)
Q Consensus 82 ~~~~~~~kEri~~D~~~~~i~Y~-vieGdl~~~~~s~~~t~~v~p~~dGs~v~w~~~ye~~~~ 143 (172)
.+. -+...|+..+++.+. ...| ++.+...+++|+|.++||.|++..+|+..++
T Consensus 62 ----~w~-s~~~~~~~~~~i~~~~~~~~----p~~~m~~~W~f~~~~~gT~V~~~~~~~~~~~ 115 (146)
T cd08860 62 ----SWV-SERTLDPVNRTVRARRVETG----PFAYMNIRWEYTEVPEGTRMRWVQDFEMKPG 115 (146)
T ss_pred ----EEE-EEEEecCCCcEEEEEEecCC----CcceeeeeEEEEECCCCEEEEEEEEEEECCC
Confidence 222 233478888888874 2222 3788999999999988899999999997754
No 14
>cd07825 SRPBCC_7 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.06 E-value=1.1e-08 Score=76.80 Aligned_cols=135 Identities=11% Similarity=0.139 Sum_probs=88.8
Q ss_pred CceEEEEcCCHHHHHHHhhcCCcccCCcCCCCeeeEEEEeccc-CCCCcEEEEEeecCCCCCcccchhcccccccccccc
Q 038195 1 METEVEIKSPADKFYNTFSSKAHTVPNMSPGNLHGVEVHEGDW-ESHGSVKSWTFSAGDFPATRTEEQTQSSHLRGLHYQ 79 (172)
Q Consensus 1 ~~~e~~i~apa~kvw~~~~d~~~~lpk~~P~~v~sve~~eGd~-g~~Gsvr~~~~~~gg~~~~~~~~~~~~~~~~~~~~~ 79 (172)
++.++.|+||+++||+++.|+. .+|+|.|... ......++. -++|+..++.....+.+
T Consensus 2 i~~~~~i~ap~e~Vw~~l~d~~-~~~~W~~~~~-~~~~~~~~~~~~~G~~~~~~~~~~g~~------------------- 60 (144)
T cd07825 2 VSVSRTVDAPAEAVFAVLADPR-RHPEIDGSGT-VREAIDGPRILAVGDVFRMAMRLDGGP------------------- 60 (144)
T ss_pred eEEEEEEeCCHHHHHHHHhCcc-ccceeCCCCc-cccccCCCccCCCCCEEEEEEEcCCCc-------------------
Confidence 4678999999999999999995 7999998522 222334432 37898888776543320
Q ss_pred cccceeeeeEEEEE-ecCCCceEEEEEE-eCccccceeEEEEEEEEEecCCC-cEEEEEEEEEecCCCCC---ChhhhhH
Q 038195 80 WSQHFVEKMKEKVE-LDPENKTVAMVVI-EGDLMKHFKSYKVIIKVIPKSEG-SLVKWIWEYEKLQEDGP---TPSKYVD 153 (172)
Q Consensus 80 ~~~~~~~~~kEri~-~D~~~~~i~Y~vi-eGdl~~~~~s~~~t~~v~p~~dG-s~v~w~~~ye~~~~~~~---~p~~~~~ 153 (172)
. .+..++. +++. +.++|+.. .+.. ......++.++|.++| |.++++..|...+.... .......
T Consensus 61 -----~-~~~~~v~~~~p~-~~l~~~~~~~~~~---~~~~~~~~~l~~~~~g~T~vt~~~~~~g~~~~~~~~~~~~~~~~ 130 (144)
T cd07825 61 -----Y-RITNHVVAFEEN-RLIAWRPGPAGQE---PGGHRWRWELEPIGPGRTRVTETYDWSAVTDLKELLGFPAFPEV 130 (144)
T ss_pred -----e-EEEEEEEEECCC-CEEEEEccCCCCC---CCceeEEEEEEECCCCcEEEEEEEeccCChhhhhccccCCCCHH
Confidence 2 2345566 6665 45888853 2222 1234567889998865 99999998886644211 1223455
Q ss_pred HHHHHHHHHHHHH
Q 038195 154 FVTDLTKNIDAHL 166 (172)
Q Consensus 154 ~~~~~~k~ie~yl 166 (172)
.....+..|++||
T Consensus 131 g~~~~l~~L~~~~ 143 (144)
T cd07825 131 QLEASLDRLATLA 143 (144)
T ss_pred HHHHHHHHHHHHh
Confidence 6778888888886
No 15
>cd08862 SRPBCC_Smu440-like Ligand-binding SRPBCC domain of Streptococcus mutans Smu.440 and related proteins. This family includes the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of Streptococcus mutans Smu.440 and related proteins. This domain belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Streptococcus mutans is a dental pathogen, and the leading cause of dental caries. In this pathogen, the gene encoding Smu.440 is in the same operon as the gene encoding SMU.441, a member of the MarR protein family of transcriptional regulators involved in multiple antibiotic resistance. It has been suggested that SMU.440 is involved in polyketide-like antibiotic resistance.
Probab=99.06 E-value=1.3e-08 Score=75.26 Aligned_cols=104 Identities=14% Similarity=0.099 Sum_probs=74.1
Q ss_pred CceEEEEcCCHHHHHHHhhcCCcccCCcCCCCeeeEEEEecccCCCCcEEEEEeecCCCCCcccchhccccccccccccc
Q 038195 1 METEVEIKSPADKFYNTFSSKAHTVPNMSPGNLHGVEVHEGDWESHGSVKSWTFSAGDFPATRTEEQTQSSHLRGLHYQW 80 (172)
Q Consensus 1 ~~~e~~i~apa~kvw~~~~d~~~~lpk~~P~~v~sve~~eGd~g~~Gsvr~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~ 80 (172)
++.++.|+||+++||+++.|.. .+|+|+|+ ++++++..+.+ ++|+...++... +.
T Consensus 3 ~~~~~~i~Ap~~~Vw~~~~d~~-~~~~w~~~-~~~~~~~~~~~-~~G~~~~~~~~~-~~--------------------- 57 (138)
T cd08862 3 FEATIVIDAPPERVWAVLTDVE-NWPAWTPS-VETVRLEGPPP-AVGSSFKMKPPG-LV--------------------- 57 (138)
T ss_pred EEEEEEEcCCHHHHHHHHHhhh-hcccccCc-ceEEEEecCCC-CCCcEEEEecCC-CC---------------------
Confidence 3678999999999999999985 78999996 89999876542 677766554321 11
Q ss_pred ccceeeeeEEEEE-ecCCCceEEEEEEeCccccceeEEEEEEEEEecCC-CcEEEEEEEEEec
Q 038195 81 SQHFVEKMKEKVE-LDPENKTVAMVVIEGDLMKHFKSYKVIIKVIPKSE-GSLVKWIWEYEKL 141 (172)
Q Consensus 81 ~~~~~~~~kEri~-~D~~~~~i~Y~vieGdl~~~~~s~~~t~~v~p~~d-Gs~v~w~~~ye~~ 141 (172)
.+..++. +++. +.++++.... ...+..++.|++.++ ||.++|+.+|...
T Consensus 58 ------~~~~~i~~~~p~-~~~~~~~~~~-----~~~~~~~~~~~~~~~~~t~l~~~~~~~~~ 108 (138)
T cd08862 58 ------RSTFTVTELRPG-HSFTWTGPAP-----GISAVHRHEFEAKPDGGVRVTTSESLSGP 108 (138)
T ss_pred ------ceEEEEEEecCC-CEEEEEecCC-----CEEEEEEEEEEEcCCCcEEEEEEEEeecc
Confidence 1345666 7755 4588875432 134457889999874 5999998887643
No 16
>PF03364 Polyketide_cyc: Polyketide cyclase / dehydrase and lipid transport; InterPro: IPR005031 Members of this family of enzymes from Streptomyces spp. are involved in polyketide (linear poly-beta-ketones) synthesis.; PDB: 1T17_A 3GGN_B 2KCZ_A 2D4R_B 2REZ_A 2RES_A 3TVQ_A 2RER_A 2KF2_A 3TL1_A ....
Probab=99.04 E-value=9e-09 Score=76.15 Aligned_cols=110 Identities=22% Similarity=0.432 Sum_probs=78.1
Q ss_pred EcCCHHHHHHHhhcCCcccCCcCCCCeeeEEEEecccCCCCcEEEEEeecCCCCCcccchhcccccccccccccccceee
Q 038195 7 IKSPADKFYNTFSSKAHTVPNMSPGNLHGVEVHEGDWESHGSVKSWTFSAGDFPATRTEEQTQSSHLRGLHYQWSQHFVE 86 (172)
Q Consensus 7 i~apa~kvw~~~~d~~~~lpk~~P~~v~sve~~eGd~g~~Gsvr~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (172)
|+||++++|+++.|.. .+|.|+|. ++++++++.++ . +..-.+....++. . ..
T Consensus 1 V~ap~~~V~~~i~D~e-~~~~~~p~-~~~v~vl~~~~-~-~~~~~~~~~~~~~-----------------~-------~~ 52 (130)
T PF03364_consen 1 VNAPPEEVWSVITDYE-NYPRFFPP-VKEVRVLERDG-D-GMRARWEVKFGGI-----------------K-------RS 52 (130)
T ss_dssp ESS-HHHHHHHHTTGG-GHHHHCTT-EEEEEEEEEEC-C-EEEEEEEECTTTT-----------------C-------EE
T ss_pred CCCCHHHHHHHHHHHH-HHHHhCCC-CceEEEEEeCC-C-eEEEEEEEecCCE-----------------E-------EE
Confidence 6899999999999985 79999996 99999999773 2 3333455544443 0 22
Q ss_pred eeEEEEEecCCCceEEEEEEeCccccceeEEEEEEEEEecCC---CcEEEEEEEEEecCCCCCChhhh
Q 038195 87 KMKEKVELDPENKTVAMVVIEGDLMKHFKSYKVIIKVIPKSE---GSLVKWIWEYEKLQEDGPTPSKY 151 (172)
Q Consensus 87 ~~kEri~~D~~~~~i~Y~vieGdl~~~~~s~~~t~~v~p~~d---Gs~v~w~~~ye~~~~~~~~p~~~ 151 (172)
...++..++... +.+..++|++ +++..++++.|.++ |+.++++.+|+.... .+.|..+
T Consensus 53 -~~~~~~~~~~~~-~~~~~~~g~~----~~~~g~W~~~~~~~~~~g~~~~v~~~~~~~~~-~~~~~~~ 113 (130)
T PF03364_consen 53 -WTSRVTEDPPER-IRFEQISGPF----KSFEGSWRFEPLGGNEGGTRTRVTYDYEVDPP-GPLPGFL 113 (130)
T ss_dssp -EEEEEEEECTTT-EEEESSETTE----EEEEEEEEEEEETTECCEEEEEEEEEEEEETS-SSSHHHH
T ss_pred -EEEEEEEEEeee-eeeeecCCCc----hhcEEEEEEEECCCCcCCCEEEEEEEEEEecC-cHhHHHH
Confidence 355666444444 8888888765 89999999999998 788888888877443 2335444
No 17
>cd07822 SRPBCC_4 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=98.99 E-value=7e-08 Score=70.99 Aligned_cols=108 Identities=15% Similarity=0.168 Sum_probs=77.3
Q ss_pred CceEEEEcCCHHHHHHHhhcCCcccCCcCCCCeeeEEEEecccCCCCcEEEEEeecCC-CCCcccchhcccccccccccc
Q 038195 1 METEVEIKSPADKFYNTFSSKAHTVPNMSPGNLHGVEVHEGDWESHGSVKSWTFSAGD-FPATRTEEQTQSSHLRGLHYQ 79 (172)
Q Consensus 1 ~~~e~~i~apa~kvw~~~~d~~~~lpk~~P~~v~sve~~eGd~g~~Gsvr~~~~~~gg-~~~~~~~~~~~~~~~~~~~~~ 79 (172)
++.++.|+||+++||+++.|.. .+|+|+|. +..++... .++|+...+.+..++ .
T Consensus 2 v~~~~~i~ap~~~Vw~~~~d~~-~~~~w~~~-~~~~~~~~---~~~G~~~~~~~~~~~~~-------------------- 56 (141)
T cd07822 2 ISTEIEINAPPEKVWEVLTDFP-SYPEWNPF-VRSATGLS---LALGARLRFVVKLPGGP-------------------- 56 (141)
T ss_pred eEEEEEecCCHHHHHHHHhccc-cccccChh-heeEeccc---cCCCCEEEEEEeCCCCC--------------------
Confidence 4678999999999999999985 78999996 65654431 257888777765432 2
Q ss_pred cccceeeeeEEEEE-ecCCCceEEEEEEeCccccceeEEEEEEEEEecC-CCcEEEEEEEEEec
Q 038195 80 WSQHFVEKMKEKVE-LDPENKTVAMVVIEGDLMKHFKSYKVIIKVIPKS-EGSLVKWIWEYEKL 141 (172)
Q Consensus 80 ~~~~~~~~~kEri~-~D~~~~~i~Y~vieGdl~~~~~s~~~t~~v~p~~-dGs~v~w~~~ye~~ 141 (172)
.-...+++. +|+ .+.+.|+...|+.. .-....++.|+|.+ +||.++|...|...
T Consensus 57 -----~~~~~~~v~~~~p-~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~T~~~~~~~~~g~ 112 (141)
T cd07822 57 -----PRSFKPRVTEVEP-PRRLAWRGGLPFPG--LLDGEHSFELEPLGDGGTRFVHRETFSGL 112 (141)
T ss_pred -----cEEEEEEEEEEcC-CCEeEEEecCCCCc--EeeEEEEEEEEEcCCCcEEEEEeeEEEEE
Confidence 123566777 876 46889998776532 12455788999984 55999999877643
No 18
>cd05018 CoxG Carbon monoxide dehydrogenase subunit G (CoxG). CoxG has been shown, in Oligotropha carboxidovorans, to anchor the carbon monoxide (CO) dehydrogenase to the cytoplasmic membrane. The gene encoding CoxG is part of the Cox cluster (coxBCMSLDEFGHIK) located on a low-copy-number, circular, megaplasmid pHCG3. This cluster includes genes encoding subunits of CO dehydrogenase and several accessory components involved in the utilization of CO. This family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=98.99 E-value=3.7e-08 Score=73.16 Aligned_cols=112 Identities=13% Similarity=0.198 Sum_probs=73.4
Q ss_pred CceEEEEcCCHHHHHHHhhcCCcccCCcCCCCeeeEEEEecccCCCCcEEEEEeecCCCCCcccchhccccccccccccc
Q 038195 1 METEVEIKSPADKFYNTFSSKAHTVPNMSPGNLHGVEVHEGDWESHGSVKSWTFSAGDFPATRTEEQTQSSHLRGLHYQW 80 (172)
Q Consensus 1 ~~~e~~i~apa~kvw~~~~d~~~~lpk~~P~~v~sve~~eGd~g~~Gsvr~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~ 80 (172)
++.++.+++|++++|+++.|.. .+|+|+|. ++++++++++ ... -.+++..+.. . ..
T Consensus 3 ~~~~~~i~a~~e~v~~~l~D~~-~~~~w~p~-~~~~~~~~~~--~~~--~~~~~~~~~~--~---------------~~- 58 (144)
T cd05018 3 ISGEFRIPAPPEEVWAALNDPE-VLARCIPG-CESLEKIGPN--EYE--ATVKLKVGPV--K---------------GT- 58 (144)
T ss_pred eeeEEEecCCHHHHHHHhcCHH-HHHhhccc-hhhccccCCC--eEE--EEEEEEEccE--E---------------EE-
Confidence 3678899999999999999985 79999996 8888877643 111 1122222211 0 00
Q ss_pred ccceeeeeEEEEE-ecCCCceEEEEEEeCccccceeEEEEEEEEEecCCCcEEEEEEEEEecCC
Q 038195 81 SQHFVEKMKEKVE-LDPENKTVAMVVIEGDLMKHFKSYKVIIKVIPKSEGSLVKWIWEYEKLQE 143 (172)
Q Consensus 81 ~~~~~~~~kEri~-~D~~~~~i~Y~vieGdl~~~~~s~~~t~~v~p~~dGs~v~w~~~ye~~~~ 143 (172)
.. ..-++. +|+. +.+.++....+. .....+..++.++|.++||.++|+.+|+..+.
T Consensus 59 ----~~-~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~gT~v~~~~~~~~~g~ 115 (144)
T cd05018 59 ----FK-GKVELSDLDPP-ESYTITGEGKGG-AGFVKGTARVTLEPDGGGTRLTYTADAQVGGK 115 (144)
T ss_pred ----EE-EEEEEEecCCC-cEEEEEEEEcCC-CceEEEEEEEEEEecCCcEEEEEEEEEEEccC
Confidence 11 123444 4443 567777654222 12467899999999966799999999998764
No 19
>cd07814 SRPBCC_CalC_Aha1-like Putative hydrophobic ligand-binding SRPBCC domain of Micromonospora echinospora CalC, human Aha1, and related proteins. This family includes the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of Micromonospora echinospora CalC, human Aha1, and related proteins. Proteins in this group belong to the SRPBCC domain superfamily of proteins, which bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. MeCalC confers resistance to the enediyne, calicheamicin gamma 1 (CLM), by a self sacrificing mechanism which results in inactivation of both CalC and the highly reactive diradical enediyne species. MeCalC can also inactivate two other enediynes, shishijimicin and namenamicin. A crucial Gly of the MeCalC CLM resistance mechanism is not conserved in this subgroup. This family also includes the C-terminal, Bet v1-like domain of Aha1, one of several co-chaperones, which regulate the dimeric chaperone Hsp90. Aha1 promotes dimer
Probab=98.96 E-value=1.4e-08 Score=74.99 Aligned_cols=110 Identities=10% Similarity=0.055 Sum_probs=76.3
Q ss_pred CceEEEEcCCHHHHHHHhhcCCcccCCcCCCCeeeEEEEecccCCCCcEEEEEeecCCCCCcccchhccccccccccccc
Q 038195 1 METEVEIKSPADKFYNTFSSKAHTVPNMSPGNLHGVEVHEGDWESHGSVKSWTFSAGDFPATRTEEQTQSSHLRGLHYQW 80 (172)
Q Consensus 1 ~~~e~~i~apa~kvw~~~~d~~~~lpk~~P~~v~sve~~eGd~g~~Gsvr~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~ 80 (172)
++.++.|+||++.||+++.|.. .+|+|+|. +..++ ++...-|+.+.+....+|.
T Consensus 2 i~~s~~I~a~~~~Vw~~l~d~~-~~~~w~~~-~~~~~---~~~~~Gg~~~~~~~~~~g~--------------------- 55 (139)
T cd07814 2 ITIEREFDAPPELVWRALTDPE-LLAQWFGP-TTTAE---MDLRVGGRWFFFMTGPDGE--------------------- 55 (139)
T ss_pred eEEEEEecCCHHHHHHHcCCHH-HHHhhhCc-CCceE---EcccCCceEEEEEECCCCC---------------------
Confidence 4678999999999999999985 78999995 22222 2211116666554333322
Q ss_pred ccceeeeeEEEEE-ecCCCceEEEEEEeCccccceeEEEEEEEEEecCCCcEEEEEEEEEecC
Q 038195 81 SQHFVEKMKEKVE-LDPENKTVAMVVIEGDLMKHFKSYKVIIKVIPKSEGSLVKWIWEYEKLQ 142 (172)
Q Consensus 81 ~~~~~~~~kEri~-~D~~~~~i~Y~vieGdl~~~~~s~~~t~~v~p~~dGs~v~w~~~ye~~~ 142 (172)
.-.+..++. +|+. +.+.|+...++. ...-....++.|.|.++||.++|+.+|....
T Consensus 56 ----~~~~~~~i~~~~~~-~~i~~~~~~~~~-~~~~~~~~~~~~~~~~~~T~v~~~~~~~~~~ 112 (139)
T cd07814 56 ----EGWVSGEVLEVEPP-RRLVFTWAFSDE-TPGPETTVTVTLEETGGGTRLTLTHSGFPEE 112 (139)
T ss_pred ----EEeccEEEEEEcCC-CeEEEEecccCC-CCCCceEEEEEEEECCCCEEEEEEEEccChH
Confidence 223567777 7755 679999887753 1123467788999999889999999998764
No 20
>cd07818 SRPBCC_1 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=98.93 E-value=5e-08 Score=73.83 Aligned_cols=110 Identities=16% Similarity=0.172 Sum_probs=76.9
Q ss_pred CceEEEEcCCHHHHHHHhhcCCcccCCcCCCCeee---EEEEe-cccCCCCcEEEEEeecC-CCCCcccchhcccccccc
Q 038195 1 METEVEIKSPADKFYNTFSSKAHTVPNMSPGNLHG---VEVHE-GDWESHGSVKSWTFSAG-DFPATRTEEQTQSSHLRG 75 (172)
Q Consensus 1 ~~~e~~i~apa~kvw~~~~d~~~~lpk~~P~~v~s---ve~~e-Gd~g~~Gsvr~~~~~~g-g~~~~~~~~~~~~~~~~~ 75 (172)
++.++.|+||+++||+++.|.. .+|+|+|. +.. ++... +...++|+...++...+ +.
T Consensus 4 ~~~s~~I~ap~e~V~~~i~D~~-~~~~W~p~-~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~---------------- 65 (150)
T cd07818 4 VERSIVINAPPEEVFPYVNDLK-NWPEWSPW-EKLDPDMKRTYSGPDSGVGASYSWEGNDKVGE---------------- 65 (150)
T ss_pred EEEEEEEeCCHHHHHHHHhCcc-cCcccCch-hhcCcceEEEecCCCCCCCeEEEEecCCcccc----------------
Confidence 3678899999999999999996 79999995 433 22222 22136888877754331 11
Q ss_pred cccccccceeeeeEEEEE-ecCCCceEEEEEEeCccccceeEEEEEEEEEecCCCcEEEEEEEEEecCC
Q 038195 76 LHYQWSQHFVEKMKEKVE-LDPENKTVAMVVIEGDLMKHFKSYKVIIKVIPKSEGSLVKWIWEYEKLQE 143 (172)
Q Consensus 76 ~~~~~~~~~~~~~kEri~-~D~~~~~i~Y~vieGdl~~~~~s~~~t~~v~p~~dGs~v~w~~~ye~~~~ 143 (172)
...++. +++ ++.+.|++..++... ..+..++.++|.++||.++|+.+|+....
T Consensus 66 ------------~~~~v~~~~p-~~~i~~~~~~~~~~~--~~~~~~~~~~~~~~gT~v~~~~~~~~~~~ 119 (150)
T cd07818 66 ------------GEMEITESVP-NERIEYELRFIKPFE--ATNDVEFTLEPVGGGTKVTWGMSGELPFP 119 (150)
T ss_pred ------------eEEEEEecCC-CcEEEEEEEecCCcc--ccceEEEEEEEcCCceEEEEEEEecCCch
Confidence 124455 654 567999998644321 36678999999988899999999987653
No 21
>cd07817 SRPBCC_8 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=98.92 E-value=4.4e-08 Score=72.53 Aligned_cols=104 Identities=18% Similarity=0.337 Sum_probs=73.7
Q ss_pred CceEEEEcCCHHHHHHHhhcCCcccCCcCCCCeeeEEEEecccCCCCcEEEEEeecC-CCCCcccchhcccccccccccc
Q 038195 1 METEVEIKSPADKFYNTFSSKAHTVPNMSPGNLHGVEVHEGDWESHGSVKSWTFSAG-DFPATRTEEQTQSSHLRGLHYQ 79 (172)
Q Consensus 1 ~~~e~~i~apa~kvw~~~~d~~~~lpk~~P~~v~sve~~eGd~g~~Gsvr~~~~~~g-g~~~~~~~~~~~~~~~~~~~~~ 79 (172)
++.++.|+||++.||+++.|.. .+|+|.|. +++++++.|. +. .++.... |.
T Consensus 2 v~~~i~I~ap~e~V~~~~~D~~-~~~~w~~~-~~~~~~~~~~----~~--~~~~~~~~g~-------------------- 53 (139)
T cd07817 2 VEKSITVNVPVEEVYDFWRDFE-NLPRFMSH-VESVEQLDDT----RS--HWKAKGPAGL-------------------- 53 (139)
T ss_pred eeEEEEeCCCHHHHHHHHhChh-hhHHHhhh-hcEEEEcCCC----ce--EEEEecCCCC--------------------
Confidence 4678999999999999999985 79999996 8899887542 22 2332221 22
Q ss_pred cccceeeeeEEEEE-ecCCCceEEEEEEeCccccceeEEEEEEEEEecCC-CcEEEEEEEEEecCC
Q 038195 80 WSQHFVEKMKEKVE-LDPENKTVAMVVIEGDLMKHFKSYKVIIKVIPKSE-GSLVKWIWEYEKLQE 143 (172)
Q Consensus 80 ~~~~~~~~~kEri~-~D~~~~~i~Y~vieGdl~~~~~s~~~t~~v~p~~d-Gs~v~w~~~ye~~~~ 143 (172)
......++. .++ ++.|.|....|.. .+..++.|+|.++ +|.+++++.|++...
T Consensus 54 -----~~~~~~~v~~~~~-~~~i~~~~~~~~~-----~~~~~~~f~~~~~~~T~vt~~~~~~~~~~ 108 (139)
T cd07817 54 -----SVEWDAEITEQVP-NERIAWRSVEGAD-----PNAGSVRFRPAPGRGTRVTLTIEYEPPGG 108 (139)
T ss_pred -----cEEEEEEEeccCC-CCEEEEEECCCCC-----CcceEEEEEECCCCCeEEEEEEEEECCcc
Confidence 112344555 545 4459998766542 4567888999777 499999999998753
No 22
>PRK10724 hypothetical protein; Provisional
Probab=98.91 E-value=2.5e-08 Score=78.72 Aligned_cols=108 Identities=17% Similarity=0.279 Sum_probs=81.9
Q ss_pred ceEEEEcCCHHHHHHHhhcCCcccCCcCCCCeeeEEEEecccCCCCcEEEEEeecCCCCCcccchhcccccccccccccc
Q 038195 2 ETEVEIKSPADKFYNTFSSKAHTVPNMSPGNLHGVEVHEGDWESHGSVKSWTFSAGDFPATRTEEQTQSSHLRGLHYQWS 81 (172)
Q Consensus 2 ~~e~~i~apa~kvw~~~~d~~~~lpk~~P~~v~sve~~eGd~g~~Gsvr~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~ 81 (172)
..++.|.+|++++|+++.|.. ..|+|+|. .+++++++-+++ +.+..++.+-+|-
T Consensus 18 ~~~~~v~~s~~~v~~lv~Dve-~yp~flp~-~~~s~vl~~~~~--~~~a~l~v~~~g~---------------------- 71 (158)
T PRK10724 18 SRTALVPYSAEQMYQLVNDVQ-SYPQFLPG-CTGSRVLESTPG--QMTAAVDVSKAGI---------------------- 71 (158)
T ss_pred EEEEEecCCHHHHHHHHHHHH-HHHHhCcc-cCeEEEEEecCC--EEEEEEEEeeCCc----------------------
Confidence 467889999999999999985 79999996 888888875422 3344444444443
Q ss_pred cceeeeeEEEEEecCCCceEEEEEEeCccccceeEEEEEEEEEecCCC-cEEEEEEEEEecCC
Q 038195 82 QHFVEKMKEKVELDPENKTVAMVVIEGDLMKHFKSYKVIIKVIPKSEG-SLVKWIWEYEKLQE 143 (172)
Q Consensus 82 ~~~~~~~kEri~~D~~~~~i~Y~vieGdl~~~~~s~~~t~~v~p~~dG-s~v~w~~~ye~~~~ 143 (172)
......++.+++.+ +|.+.+++|+ ++++.+.|+|.|.++| |.|++..+|+....
T Consensus 72 ---~~~f~srv~~~~~~-~I~~~~~~Gp----F~~l~g~W~f~p~~~~~t~V~~~l~fef~s~ 126 (158)
T PRK10724 72 ---SKTFTTRNQLTSNQ-SILMQLVDGP----FKKLIGGWKFTPLSQEACRIEFHLDFEFTNK 126 (158)
T ss_pred ---cEEEEEEEEecCCC-EEEEEecCCC----hhhccceEEEEECCCCCEEEEEEEEEEEchH
Confidence 33345667765544 7999999985 4889999999998765 99999999997653
No 23
>cd07823 SRPBCC_5 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=98.80 E-value=3.1e-07 Score=69.97 Aligned_cols=114 Identities=15% Similarity=0.161 Sum_probs=72.9
Q ss_pred CceEEEEcCCHHHHHHHhhcCCcccCCcCCCCeeeEEEEecccCCCCcEEEEEeecCCCCCcccchhccccccccccccc
Q 038195 1 METEVEIKSPADKFYNTFSSKAHTVPNMSPGNLHGVEVHEGDWESHGSVKSWTFSAGDFPATRTEEQTQSSHLRGLHYQW 80 (172)
Q Consensus 1 ~~~e~~i~apa~kvw~~~~d~~~~lpk~~P~~v~sve~~eGd~g~~Gsvr~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~ 80 (172)
++.+++|+||++++|+++.|.. .++.|+|+ +++++.+.++ ...-.++...++- .
T Consensus 1 ~~~~~~v~a~pe~vw~~l~D~~-~~~~~~pg-~~~~~~~~~~----~~~~~~~~~~g~~--~------------------ 54 (146)
T cd07823 1 LENEFTVPAPPDRVWALLLDIE-RVAPCLPG-ASLTEVEGDD----EYKGTVKVKLGPI--S------------------ 54 (146)
T ss_pred CCceEEecCCHHHHHHHhcCHH-HHHhcCCC-ceeccccCCC----eEEEEEEEEEccE--E------------------
Confidence 4678999999999999999985 78999997 8887764322 1222333333322 0
Q ss_pred ccceeee-eEEEEE-ecCCCceEEEEEEeCccc-cceeEEEEEEEEEecCCCcEEEEEEEEEecCCC
Q 038195 81 SQHFVEK-MKEKVE-LDPENKTVAMVVIEGDLM-KHFKSYKVIIKVIPKSEGSLVKWIWEYEKLQED 144 (172)
Q Consensus 81 ~~~~~~~-~kEri~-~D~~~~~i~Y~vieGdl~-~~~~s~~~t~~v~p~~dGs~v~w~~~ye~~~~~ 144 (172)
..+ ..=++. ++++.+.+.++.-.-+.. ..--....++++.|.++||.++|..+++..+..
T Consensus 55 ----~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~l~~~~~gT~v~~~~~~~~~g~l 117 (146)
T cd07823 55 ----ASFKGTARLLEDDEAARRAVLEATGKDARGQGTAEATVTLRLSPAGGGTRVTVDTDLALTGKL 117 (146)
T ss_pred ----EEEEEEEEEEeccCCCcEEEEEEEEecCCCcceEEEEEEEEEEecCCcEEEEEEEEEEEeeEh
Confidence 011 112344 555788888775431111 011146678888886667999999999877653
No 24
>COG3427 Carbon monoxide dehydrogenase subunit G, CoxG [Energy production and conversion]
Probab=98.42 E-value=8.6e-06 Score=63.98 Aligned_cols=137 Identities=15% Similarity=0.250 Sum_probs=90.5
Q ss_pred CceEEEEcCCHHHHHHHhhcCCcccCCcCCCCeeeEEEEecccCCCCcEEEEEeecCCCCCcccchhccccccccccccc
Q 038195 1 METEVEIKSPADKFYNTFSSKAHTVPNMSPGNLHGVEVHEGDWESHGSVKSWTFSAGDFPATRTEEQTQSSHLRGLHYQW 80 (172)
Q Consensus 1 ~~~e~~i~apa~kvw~~~~d~~~~lpk~~P~~v~sve~~eGd~g~~Gsvr~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~ 80 (172)
++-+..|++|++.+|+++.|.. .+...+|+ ++|++. +|| ...-++....|.- ..
T Consensus 3 ~~G~f~V~~p~e~Vw~~L~dpe-~~a~ciPG-~qs~e~-~g~----e~~~~v~l~ig~l--~~----------------- 56 (146)
T COG3427 3 YEGTFRVAAPPEAVWEFLNDPE-QVAACIPG-VQSVET-NGD----EYTAKVKLKIGPL--KG----------------- 56 (146)
T ss_pred ccceEEecCCHHHHHHHhcCHH-HHHhhcCC-cceeee-cCC----eEEEEEEEeecce--eE-----------------
Confidence 3568899999999999999985 67789997 999984 565 2222333333322 10
Q ss_pred ccceeeeeEEEEE-ecCCCceEEEEEEeCccccceeEEEEEEEEEecCCCcEEEEEEEEEecCCCC-CChhhhh----HH
Q 038195 81 SQHFVEKMKEKVE-LDPENKTVAMVVIEGDLMKHFKSYKVIIKVIPKSEGSLVKWIWEYEKLQEDG-PTPSKYV----DF 154 (172)
Q Consensus 81 ~~~~~~~~kEri~-~D~~~~~i~Y~vieGdl~~~~~s~~~t~~v~p~~dGs~v~w~~~ye~~~~~~-~~p~~~~----~~ 154 (172)
.-.-+=++. +|+..++|+...-+|.. ...-..+..+.++|.++|+++.|.+.-+-.+... .-+..+. ..
T Consensus 57 ----~~~g~~~~~~v~~~~~~~~i~g~G~~~-~g~~~~~~~v~l~~~g~gt~v~w~~~~~~gg~laqlGsr~i~~~~~kl 131 (146)
T COG3427 57 ----TFSGRVRFVNVDEPPRSITINGSGGGA-AGFADGTVDVQLEPSGEGTRVNWFADANVGGKLAQLGSRLIDSVARKL 131 (146)
T ss_pred ----EEEEEEEEccccCCCcEEEEEeecccc-cceeeeeeEEEEEEcCCCcEEEEEEEccccHHHHHHhHHHHHHHHHHH
Confidence 011233444 78999999888776444 3456788899999999999999999877665321 1122222 25
Q ss_pred HHHHHHHHHHHHhh
Q 038195 155 VTDLTKNIDAHLLK 168 (172)
Q Consensus 155 ~~~~~k~ie~ylla 168 (172)
...++.+|.++|.+
T Consensus 132 i~~~~~~l~~~l~~ 145 (146)
T COG3427 132 INRFFDCLSSELAA 145 (146)
T ss_pred HHHHHHHHHHHHhc
Confidence 56666777766643
No 25
>cd08893 SRPBCC_CalC_Aha1-like_GntR-HTH Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins; some contain an N-terminal GntR family winged HTH DNA-binding domain. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. Some proteins in this subgroup contain an N-terminal winged helix-turn-helix DNA-binding domain found in the GntR family of proteins which include bacterial transcriptional regulators and their putative homologs from eukaryota and archaea.
Probab=98.27 E-value=2.1e-05 Score=57.93 Aligned_cols=130 Identities=12% Similarity=0.074 Sum_probs=75.8
Q ss_pred CceEEEEcCCHHHHHHHhhcCCcccCCcCCCCeeeEEEEecccCCCCcEEEEEeecCCCCCcccchhccccccccccccc
Q 038195 1 METEVEIKSPADKFYNTFSSKAHTVPNMSPGNLHGVEVHEGDWESHGSVKSWTFSAGDFPATRTEEQTQSSHLRGLHYQW 80 (172)
Q Consensus 1 ~~~e~~i~apa~kvw~~~~d~~~~lpk~~P~~v~sve~~eGd~g~~Gsvr~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~ 80 (172)
++.++.|+||+++||+++.|.. .+++|.+... ..++. .+|.--++.....+.
T Consensus 2 ~~~~~~i~ap~e~Vw~~~td~~-~~~~W~~~~~-----~~~~~-~~G~~~~~~~~~~~~--------------------- 53 (136)
T cd08893 2 FVYVTYIRATPEKVWQALTDPE-FTRQYWGGTT-----VESDW-KVGSAFEYRRGDDGT--------------------- 53 (136)
T ss_pred eEEEEEecCCHHHHHHHHcCch-hhhheecccc-----cccCC-cCCCeEEEEeCCCcc---------------------
Confidence 4678999999999999999985 7899998621 24442 455543433322101
Q ss_pred ccceeeeeEEEEE-ecCCCceEEEEEEeCccc--cceeEEEEEEEEEecCCCcEEEEEEEEEecCCCCCChhhhhHHHHH
Q 038195 81 SQHFVEKMKEKVE-LDPENKTVAMVVIEGDLM--KHFKSYKVIIKVIPKSEGSLVKWIWEYEKLQEDGPTPSKYVDFVTD 157 (172)
Q Consensus 81 ~~~~~~~~kEri~-~D~~~~~i~Y~vieGdl~--~~~~s~~~t~~v~p~~dGs~v~w~~~ye~~~~~~~~p~~~~~~~~~ 157 (172)
. .+.-++. ++ +++.+.|+...++.. ..-.....++.++|.++|+.+..+..-...+. ..-.........
T Consensus 54 ----~-~~~~~v~~~~-~~~~l~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~t~l~~~~~~~~~~~--~~~~~~~~gw~~ 125 (136)
T cd08893 54 ----V-DVEGEVLESD-PPRRLVHTWRAVWDPEMAAEPPSRVTFEIEPVGDVVKLTVTHDGFPPGS--PTLEGVSGGWPA 125 (136)
T ss_pred ----c-ccceEEEEec-CCCeEEEEEecCCCcccCCCCCEEEEEEEEecCCcEEEEEEecCCCCch--hHHHhhhcCHHH
Confidence 0 1234455 65 455566666533321 11224566788889877776666655432221 112223345666
Q ss_pred HHHHHHHHH
Q 038195 158 LTKNIDAHL 166 (172)
Q Consensus 158 ~~k~ie~yl 166 (172)
+++.|.+||
T Consensus 126 ~l~~Lk~~~ 134 (136)
T cd08893 126 ILSSLKTLL 134 (136)
T ss_pred HHHHHHHHh
Confidence 778888776
No 26
>cd08899 SRPBCC_CalC_Aha1-like_6 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=98.23 E-value=2.5e-05 Score=60.55 Aligned_cols=125 Identities=11% Similarity=0.099 Sum_probs=80.3
Q ss_pred ceEEEEcCCHHHHHHHhhcCCcccCCcCCCCeeeEEEEecccCCCCcEEEEEeecCCCCCcccchhcccccccccccccc
Q 038195 2 ETEVEIKSPADKFYNTFSSKAHTVPNMSPGNLHGVEVHEGDWESHGSVKSWTFSAGDFPATRTEEQTQSSHLRGLHYQWS 81 (172)
Q Consensus 2 ~~e~~i~apa~kvw~~~~d~~~~lpk~~P~~v~sve~~eGd~g~~Gsvr~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~ 81 (172)
+.+..|+||+++||+++.|.. .+++|.|. . .++ -.+|....+.+...+.
T Consensus 14 ~~~~~i~Ap~e~Vw~altdp~-~~~~W~~~-~------~~~-~~~G~~~~~~~~~~~~---------------------- 62 (157)
T cd08899 14 RFERLLPAPIEDVWAALTDPE-RLARWFAP-G------TGD-LRVGGRVEFVMDDEEG---------------------- 62 (157)
T ss_pred EEEEecCCCHHHHHHHHcCHH-HHHhhcCC-C------CCC-cccCceEEEEecCCCC----------------------
Confidence 567889999999999999985 78999994 2 233 2456555555433111
Q ss_pred cceeeeeEEEEE-ecCCCceEEEEEEeCccccceeEEEEEEEEEecCCCcEEEEEEEEEecCCCCCChhhhhHHHHHHHH
Q 038195 82 QHFVEKMKEKVE-LDPENKTVAMVVIEGDLMKHFKSYKVIIKVIPKSEGSLVKWIWEYEKLQEDGPTPSKYVDFVTDLTK 160 (172)
Q Consensus 82 ~~~~~~~kEri~-~D~~~~~i~Y~vieGdl~~~~~s~~~t~~v~p~~dGs~v~w~~~ye~~~~~~~~p~~~~~~~~~~~k 160 (172)
. ...-++. +|+. +.+.|+...++ .....+++|++.++||.++.+..+.+.. .......+.-..++.
T Consensus 63 ---~-~~~~~v~e~~p~-~~l~~~~~~~~-----~~~~~~~~l~~~~~gT~v~~~~~~~~~~---~~~~~~~~GW~~~L~ 129 (157)
T cd08899 63 ---P-NATGTILACEPP-RLLAFTWGEGG-----GESEVRFELAPEGDGTRLTLTHRLLDER---FGAGAVGAGWHLCLD 129 (157)
T ss_pred ---C-ccceEEEEEcCC-cEEEEEecCCC-----CCceEEEEEEEcCCCEEEEEEEeccCch---hhhhhhcccHHHHHH
Confidence 0 1345666 6554 67788776554 1234577888887779888887776443 112233445666778
Q ss_pred HHHHHHhhcc
Q 038195 161 NIDAHLLKEE 170 (172)
Q Consensus 161 ~ie~ylla~~ 170 (172)
.|.+||-+.+
T Consensus 130 ~Lk~~~e~~~ 139 (157)
T cd08899 130 VLEAALEGGP 139 (157)
T ss_pred HHHHHHcCCC
Confidence 8888876543
No 27
>PF06240 COXG: Carbon monoxide dehydrogenase subunit G (CoxG); InterPro: IPR010419 The CO dehydrogenase structural genes coxMSL are flanked by nine accessory genes arranged as the cox gene cluster. The cox genes are specifically and coordinately transcribed under chemolithoautotrophic conditions in the presence of CO as carbon and energy source [].; PDB: 2NS9_A 2PCS_A.
Probab=98.21 E-value=8.3e-05 Score=56.82 Aligned_cols=131 Identities=16% Similarity=0.228 Sum_probs=73.1
Q ss_pred EEEEcCCHHHHHHHhhcCCcccCCcCCCCeeeEEEEecccCCCCcEEEEEeecCCCCCcccchhcccccccccccccccc
Q 038195 4 EVEIKSPADKFYNTFSSKAHTVPNMSPGNLHGVEVHEGDWESHGSVKSWTFSAGDFPATRTEEQTQSSHLRGLHYQWSQH 83 (172)
Q Consensus 4 e~~i~apa~kvw~~~~d~~~~lpk~~P~~v~sve~~eGd~g~~Gsvr~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (172)
+.+|++|++++|+++.|.. .+-..+|+ +++++.+. +. -.+. ++...|.- ..+
T Consensus 2 s~~v~a~~~~vw~~l~D~~-~l~~ciPG-~~~~e~~~-~~-~~~~---~~v~vG~i--~~~------------------- 53 (140)
T PF06240_consen 2 SFEVPAPPEKVWAFLSDPE-NLARCIPG-VESIEKVG-DE-YKGK---VKVKVGPI--KGT------------------- 53 (140)
T ss_dssp EEEECS-HHHHHHHHT-HH-HHHHHSTT-EEEEEEEC-TE-EEEE---EEEESCCC--EEE-------------------
T ss_pred cEEecCCHHHHHHHhcCHH-HHHhhCCC-cEEeeecC-cE-EEEE---EEEEeccE--EEE-------------------
Confidence 6789999999999999985 67789997 99998876 41 1122 22222322 110
Q ss_pred eeeeeEEEEE-ecCCCceEEEEEEeCccccceeEEEEEEEEEecCCC-cEEEEEEEEEecCCCCC-Chhhh----hHHHH
Q 038195 84 FVEKMKEKVE-LDPENKTVAMVVIEGDLMKHFKSYKVIIKVIPKSEG-SLVKWIWEYEKLQEDGP-TPSKY----VDFVT 156 (172)
Q Consensus 84 ~~~~~kEri~-~D~~~~~i~Y~vieGdl~~~~~s~~~t~~v~p~~dG-s~v~w~~~ye~~~~~~~-~p~~~----~~~~~ 156 (172)
+ ..+=++. +|+.++.. ..+-..+... -.+..+.+++...+++ +.+.|..+++-.+-..- -..-+ ...+.
T Consensus 54 -~-~g~~~~~~~~~~~~~~-~~~~g~g~~~-~~~~~~~~~~~~~~~~~T~v~~~~~~~~~G~la~~g~~~i~~~~~~l~~ 129 (140)
T PF06240_consen 54 -F-DGEVRITEIDPPESYT-LEFEGRGRGG-GSSASANITLSLEDDGGTRVTWSADVEVGGPLASLGQRLIESVARRLIE 129 (140)
T ss_dssp -E-EEEEEEEEEETTTEEE-EEEEEEECTC-CEEEEEEEEEEECCCTCEEEEEEEEEEEECHHHHC-HHHHHHHHHHHHH
T ss_pred -E-EEEEEEEEcCCCcceE-eeeeccCCcc-ceEEEEEEEEEcCCCCCcEEEEEEEEEEccCHHHhhHHHHHHHHHHHHH
Confidence 1 1233444 66666642 3333333322 2344555666665554 99999999998764211 11122 23455
Q ss_pred HHHHHHHHHH
Q 038195 157 DLTKNIDAHL 166 (172)
Q Consensus 157 ~~~k~ie~yl 166 (172)
+++++|+..|
T Consensus 130 ~f~~~l~~~l 139 (140)
T PF06240_consen 130 QFFENLERKL 139 (140)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhc
Confidence 5556665543
No 28
>cd08900 SRPBCC_CalC_Aha1-like_7 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=98.17 E-value=0.00025 Score=53.66 Aligned_cols=135 Identities=15% Similarity=0.132 Sum_probs=78.5
Q ss_pred ceEEEEcCCHHHHHHHhhcCCcccCCcCCC-CeeeEEEEecccCCCCcEEEEEee-cCCCCCcccchhcccccccccccc
Q 038195 2 ETEVEIKSPADKFYNTFSSKAHTVPNMSPG-NLHGVEVHEGDWESHGSVKSWTFS-AGDFPATRTEEQTQSSHLRGLHYQ 79 (172)
Q Consensus 2 ~~e~~i~apa~kvw~~~~d~~~~lpk~~P~-~v~sve~~eGd~g~~Gsvr~~~~~-~gg~~~~~~~~~~~~~~~~~~~~~ 79 (172)
+.+..++||+++||+++.+.. .+.+|+.. .--.+...+.| -.+|..-...+. .+|.
T Consensus 3 ~i~r~~~ap~e~Vw~a~tdp~-~l~~W~~~~~~~~~~~~~~d-~~~Gg~~~~~~~~~~g~-------------------- 60 (143)
T cd08900 3 TLERTYPAPPERVFAAWSDPA-ARARWFVPSPDWTVLEDEFD-FRVGGREVSRGGPKGGP-------------------- 60 (143)
T ss_pred EEEEEeCCCHHHHHHHhcCHH-HHHhcCCCCCCCceeeeEEe-cCCCCEEEEEEECCCCC--------------------
Confidence 467789999999999999974 78899864 11223444445 244544444443 2333
Q ss_pred cccceeeeeEEEEE-ecCCCceEEEEE--EeCccccceeEEEEEEEEEecCCCcEEEEEEEEEecCCCCCChhhhhHHHH
Q 038195 80 WSQHFVEKMKEKVE-LDPENKTVAMVV--IEGDLMKHFKSYKVIIKVIPKSEGSLVKWIWEYEKLQEDGPTPSKYVDFVT 156 (172)
Q Consensus 80 ~~~~~~~~~kEri~-~D~~~~~i~Y~v--ieGdl~~~~~s~~~t~~v~p~~dGs~v~w~~~ye~~~~~~~~p~~~~~~~~ 156 (172)
.-...=++. +|+.+ ++.|+- -.++-. ......++.+.+.++||.++.+-.+-...+. .........-.
T Consensus 61 -----~~~~~g~~~~~~p~~-~l~~t~~~~~~~~~--~~~s~v~~~l~~~~~gT~l~~~~~~~~~~~~-~~~~~~~~GW~ 131 (143)
T cd08900 61 -----EITVEARYHDIVPDE-RIVYTYTMHIGGTL--LSASLATVEFAPEGGGTRLTLTEQGAFLDGD-DDPAGREQGTA 131 (143)
T ss_pred -----EEeeeEEEEEecCCc-eEEEEEeeccCCcc--ccceEEEEEEEECCCCEEEEEEEEEeccccc-chhhhHHHHHH
Confidence 112234555 76544 455553 223321 1223478899998878988887765332221 11233445667
Q ss_pred HHHHHHHHHHh
Q 038195 157 DLTKNIDAHLL 167 (172)
Q Consensus 157 ~~~k~ie~yll 167 (172)
.++..|++||-
T Consensus 132 ~~l~~L~~~l~ 142 (143)
T cd08900 132 ALLDNLAAELE 142 (143)
T ss_pred HHHHHHHHHHh
Confidence 77888888874
No 29
>cd08894 SRPBCC_CalC_Aha1-like_1 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=98.11 E-value=7.5e-05 Score=56.42 Aligned_cols=133 Identities=11% Similarity=0.117 Sum_probs=74.6
Q ss_pred CceEEEEcCCHHHHHHHhhcCCcccCCcCC-CCeeeEEEEecccCCCCcEEEEEe-ecCCCCCcccchhccccccccccc
Q 038195 1 METEVEIKSPADKFYNTFSSKAHTVPNMSP-GNLHGVEVHEGDWESHGSVKSWTF-SAGDFPATRTEEQTQSSHLRGLHY 78 (172)
Q Consensus 1 ~~~e~~i~apa~kvw~~~~d~~~~lpk~~P-~~v~sve~~eGd~g~~Gsvr~~~~-~~gg~~~~~~~~~~~~~~~~~~~~ 78 (172)
++.+..|+||+++||+++.+.. .+.+|++ +.+. +...+.| -.+|..-.+.+ ..+|.
T Consensus 2 l~~~r~i~ap~e~Vw~a~t~p~-~l~~W~~p~~~~-~~~~~~d-~~~GG~~~~~~~~~~g~------------------- 59 (139)
T cd08894 2 IVTTRVIDAPRDLVFAAWTDPE-HLAQWWGPEGFT-NTTHEFD-LRPGGRWRFVMHGPDGT------------------- 59 (139)
T ss_pred EEEEEEeCCCHHHHHHHhCCHH-HHhhccCcCCCc-ceEEEEE-ecCCCEEEEEEECCCCC-------------------
Confidence 4567899999999999999974 7888874 2222 2222334 23444433333 22332
Q ss_pred ccccceeeeeEEEEE-ecCCCceEEEEEEeCccccceeEEEEEEEEEecCCCcEEEEEEEEEecCCCC-CChhhhhHHHH
Q 038195 79 QWSQHFVEKMKEKVE-LDPENKTVAMVVIEGDLMKHFKSYKVIIKVIPKSEGSLVKWIWEYEKLQEDG-PTPSKYVDFVT 156 (172)
Q Consensus 79 ~~~~~~~~~~kEri~-~D~~~~~i~Y~vieGdl~~~~~s~~~t~~v~p~~dGs~v~w~~~ye~~~~~~-~~p~~~~~~~~ 156 (172)
.-...-++. +++. +.|.|+...++. ....+++|+|.++||.++.+-.|....... .......+...
T Consensus 60 ------~~~~~g~v~e~~p~-~~l~~t~~~~~~-----~~~v~~~~~~~~~gT~ltl~~~~~~~~~~~~~~~~~~~~Gw~ 127 (139)
T cd08894 60 ------DYPNRIVFLEIEPP-ERIVYDHGSGPP-----RFRLTVTFEEQGGKTRLTWRQVFPTAAERCEKIKFGAVEGNE 127 (139)
T ss_pred ------EecceEEEEEEcCC-CEEEEEeccCCC-----cEEEEEEEEECCCCEEEEEEEEcCCHHHHHHHHHhCHHHHHH
Confidence 111233555 7554 457777643321 245788999988779888886542110000 00011223566
Q ss_pred HHHHHHHHHHh
Q 038195 157 DLTKNIDAHLL 167 (172)
Q Consensus 157 ~~~k~ie~yll 167 (172)
.++..|++||.
T Consensus 128 ~~l~~L~~~l~ 138 (139)
T cd08894 128 QTLDRLAAYLA 138 (139)
T ss_pred HHHHHHHHHHh
Confidence 77888888874
No 30
>cd08896 SRPBCC_CalC_Aha1-like_3 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=98.10 E-value=8.7e-05 Score=56.50 Aligned_cols=135 Identities=10% Similarity=-0.017 Sum_probs=74.7
Q ss_pred CceEEEEcCCHHHHHHHhhcCCcccCCcCCCCeeeEEEEecccCCCCcEEEEEee-cCCCCCcccchhcccccccccccc
Q 038195 1 METEVEIKSPADKFYNTFSSKAHTVPNMSPGNLHGVEVHEGDWESHGSVKSWTFS-AGDFPATRTEEQTQSSHLRGLHYQ 79 (172)
Q Consensus 1 ~~~e~~i~apa~kvw~~~~d~~~~lpk~~P~~v~sve~~eGd~g~~Gsvr~~~~~-~gg~~~~~~~~~~~~~~~~~~~~~ 79 (172)
+..+..|+||+++||+++.+.. .+.+|++..=-++...+.|. .+|..-++.+. .+|.
T Consensus 2 l~i~r~i~a~~e~Vw~a~t~pe-~~~~W~~p~~~~~~~~~~d~-~~GG~~~~~~~~~~g~-------------------- 59 (146)
T cd08896 2 LVLSRTIDAPRELVWRAWTEPE-LLKQWFCPKPWTTEVAELDL-RPGGAFRTVMRGPDGE-------------------- 59 (146)
T ss_pred eEEEEEeCCCHHHHHHHcCCHH-HHhccCCCCCccceEEEEEe-ecCcEEEEEEECCCCC--------------------
Confidence 3567889999999999999874 77889864201122233442 34443344442 2232
Q ss_pred cccceeeeeEEEEE-ecCCCceEEEE--EEeCccccceeEEEEEEEEEecCCCcEEEEEEEEEecCCCCCChhh-----h
Q 038195 80 WSQHFVEKMKEKVE-LDPENKTVAMV--VIEGDLMKHFKSYKVIIKVIPKSEGSLVKWIWEYEKLQEDGPTPSK-----Y 151 (172)
Q Consensus 80 ~~~~~~~~~kEri~-~D~~~~~i~Y~--vieGdl~~~~~s~~~t~~v~p~~dGs~v~w~~~ye~~~~~~~~p~~-----~ 151 (172)
.-...-++. +|+.+ ++.|+ +.++.....-.....+++++|.++||.++.+..+.... ..+. .
T Consensus 60 -----~~~~~g~v~~i~p~~-~l~~t~~~~~~~~~~~~~~~~v~~~~~~~~~gT~Ltl~~~~~~~~----~~~~~~~~~~ 129 (146)
T cd08896 60 -----EFPNPGCFLEVVPGE-RLVFTDALTPGWRPAEKPFMTAIITFEDEGGGTRYTARARHWTEA----DRKQHEEMGF 129 (146)
T ss_pred -----EecceEEEEEEeCCC-EEEEEEeecCCcCCCCCCcEEEEEEEEecCCcEEEEEEEEeCCHH----HHHHHHHcCH
Confidence 111234466 76654 34444 33321111111145688999988889888765432110 0111 1
Q ss_pred hHHHHHHHHHHHHHHh
Q 038195 152 VDFVTDLTKNIDAHLL 167 (172)
Q Consensus 152 ~~~~~~~~k~ie~yll 167 (172)
.+.-..++..|++||.
T Consensus 130 ~~GW~~~l~~L~~~l~ 145 (146)
T cd08896 130 HDGWGTAADQLAALAE 145 (146)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 3456778888998875
No 31
>cd08895 SRPBCC_CalC_Aha1-like_2 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=98.09 E-value=0.00035 Score=53.15 Aligned_cols=140 Identities=16% Similarity=0.121 Sum_probs=78.5
Q ss_pred ceEEEEcCCHHHHHHHhhcCCcccCCcCCCCeeeEEEEecccCCCCcEEEEEeecCCCCCcccchhcccccccccccccc
Q 038195 2 ETEVEIKSPADKFYNTFSSKAHTVPNMSPGNLHGVEVHEGDWESHGSVKSWTFSAGDFPATRTEEQTQSSHLRGLHYQWS 81 (172)
Q Consensus 2 ~~e~~i~apa~kvw~~~~d~~~~lpk~~P~~v~sve~~eGd~g~~Gsvr~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~ 81 (172)
+.+..|+||+++||+++.|.. .+.+|.+..=-.+.+...| -.+|-.-.+.+.....+. . +.++.
T Consensus 3 ~~~r~i~ap~e~Vw~a~td~~-~~~~W~~p~~~~~~~~~~d-~~~GG~~~~~~~~~~~~~-g---~~~g~---------- 66 (146)
T cd08895 3 RLHRVIAAPPERVYRAFLDPD-ALAKWLPPDGMTGTVHEFD-AREGGGFRMSLTYFDPSV-G---KTTGN---------- 66 (146)
T ss_pred EEEEEECCCHHHHHHHHcCHH-HHhhcCCCCCeEeEEEEEe-cccCCeEEEEEEcCCccc-c---ccCCc----------
Confidence 567889999999999999985 7889886321122333344 234444344332221100 0 00000
Q ss_pred cceeeeeEEEEE-ecCCCceEEEEEEeC--ccccceeEEEEEEEEEecCCCcEEEEEEEEEecCCCCCChhhhhHHHHHH
Q 038195 82 QHFVEKMKEKVE-LDPENKTVAMVVIEG--DLMKHFKSYKVIIKVIPKSEGSLVKWIWEYEKLQEDGPTPSKYVDFVTDL 158 (172)
Q Consensus 82 ~~~~~~~kEri~-~D~~~~~i~Y~vieG--dl~~~~~s~~~t~~v~p~~dGs~v~w~~~ye~~~~~~~~p~~~~~~~~~~ 158 (172)
.....-++. +++.+ .|.|+..-. +.. .....++.+++.++||.++++...-+.. .......+.-..+
T Consensus 67 ---~~~~~g~v~~v~p~~-~i~~~~~~~~~~~~---~~~~v~~~~~~~~~~T~lt~~~~~~~~~---~~~~~~~~GW~~~ 136 (146)
T cd08895 67 ---TDVFGGRFLELVPNE-RIVYTDVFDDPSLS---GEMTMTWTLSPVSGGTDVTIVQSGIPDG---IPPEDCELGWQES 136 (146)
T ss_pred ---EeeeEEEEEEEcCCC-EEEEEEEecCCCCC---ceEEEEEEEEecCCCEEEEEEEeCCCch---hhhhHHHHHHHHH
Confidence 111233555 76654 466654322 221 2346889999988779888877642211 1233445677788
Q ss_pred HHHHHHHHh
Q 038195 159 TKNIDAHLL 167 (172)
Q Consensus 159 ~k~ie~yll 167 (172)
+..|++||-
T Consensus 137 l~~L~~~le 145 (146)
T cd08895 137 LANLAALVE 145 (146)
T ss_pred HHHHHHHhc
Confidence 889998874
No 32
>cd08898 SRPBCC_CalC_Aha1-like_5 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=98.08 E-value=8.1e-05 Score=55.47 Aligned_cols=133 Identities=14% Similarity=0.099 Sum_probs=74.7
Q ss_pred CceEEEEcCCHHHHHHHhhcCCcccCCcCCCCeeeEEEEecccCCCCcEEEEEeecCCCCCcccchhccccccccccccc
Q 038195 1 METEVEIKSPADKFYNTFSSKAHTVPNMSPGNLHGVEVHEGDWESHGSVKSWTFSAGDFPATRTEEQTQSSHLRGLHYQW 80 (172)
Q Consensus 1 ~~~e~~i~apa~kvw~~~~d~~~~lpk~~P~~v~sve~~eGd~g~~Gsvr~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~ 80 (172)
++.++.|+||+++||+++.+.. .+++|+|... ....-|. |..-.+++. +..
T Consensus 3 i~~~i~i~a~~e~Vw~~~td~~-~~~~W~~~~~--~~~~~~~----~~~g~~~~~-~~~--------------------- 53 (145)
T cd08898 3 IERTILIDAPRERVWRALTDPE-HFGQWFGVKL--GPFVVGE----GATGEITYP-GYE--------------------- 53 (145)
T ss_pred eEEEEEecCCHHHHHHHhcChh-hhhhcccccC--CCcccCC----cceeEEecC-CCC---------------------
Confidence 4678999999999999999985 7899999632 1111121 111223332 111
Q ss_pred ccceeeeeEEEEE-ecCCCceEEEEEEeCc----ccc-ceeEEEEEEEEEecCCCcEEEEEEE-EEecCCCCC--Chhhh
Q 038195 81 SQHFVEKMKEKVE-LDPENKTVAMVVIEGD----LMK-HFKSYKVIIKVIPKSEGSLVKWIWE-YEKLQEDGP--TPSKY 151 (172)
Q Consensus 81 ~~~~~~~~kEri~-~D~~~~~i~Y~vieGd----l~~-~~~s~~~t~~v~p~~dGs~v~w~~~-ye~~~~~~~--~p~~~ 151 (172)
.-...-++. ++ .++.+.|+...+. ... .-.....+++|++.++||.++++-. |...++... .....
T Consensus 54 ----~~~~~~~i~~~~-p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gT~vt~~~~~~~~~~~~~~~~~~~~~ 128 (145)
T cd08898 54 ----HGVFPVTVVEVD-PPRRFSFRWHPPAIDPGEDYSAEPSTLVEFTLEPIAGGTLLTVTESGFDALPAERRAEAYRMN 128 (145)
T ss_pred ----ccceEEEEEEeC-CCcEEEEEecCCCcccccccCCCCceEEEEEEEecCCcEEEEEEEcCCCCCChHHHHHHHHhh
Confidence 001234555 54 4455677754332 100 1123447889999988899999876 332211100 11122
Q ss_pred hHHHHHHHHHHHHHHh
Q 038195 152 VDFVTDLTKNIDAHLL 167 (172)
Q Consensus 152 ~~~~~~~~k~ie~yll 167 (172)
.+.-..++..|++||-
T Consensus 129 ~~gw~~~l~~L~~~le 144 (145)
T cd08898 129 EGGWDEQLENLVAYVE 144 (145)
T ss_pred hhhHHHHHHHHHHHhc
Confidence 3456677788888874
No 33
>cd08897 SRPBCC_CalC_Aha1-like_4 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=98.00 E-value=0.00033 Score=52.47 Aligned_cols=127 Identities=12% Similarity=0.187 Sum_probs=75.4
Q ss_pred CceEEEEcCCHHHHHHHhhcCCcccCCcCCCCeee--EEEEecccCCCCcEEEEEee-cCCCCCcccchhcccccccccc
Q 038195 1 METEVEIKSPADKFYNTFSSKAHTVPNMSPGNLHG--VEVHEGDWESHGSVKSWTFS-AGDFPATRTEEQTQSSHLRGLH 77 (172)
Q Consensus 1 ~~~e~~i~apa~kvw~~~~d~~~~lpk~~P~~v~s--ve~~eGd~g~~Gsvr~~~~~-~gg~~~~~~~~~~~~~~~~~~~ 77 (172)
++.++.++||+++||+++.+.. .+.+|++. ... +...+.|. .+|..-.+.+. .++..
T Consensus 2 ~~~~~~~~ap~e~Vw~a~td~e-~~~~W~~~-~~~~~~~~~~~d~-~~GG~~~~~~~~~~g~~----------------- 61 (133)
T cd08897 2 ITVETTVDAPIEKVWEAWTTPE-HITKWNFA-SDDWHCPSAENDL-RVGGKFSYRMEAKDGSM----------------- 61 (133)
T ss_pred EEEEEEeCCCHHHHHHHhCCHH-HHhhCCCC-CCCcccceeeecC-CcCCEEEEEEEcCCCCc-----------------
Confidence 3568899999999999999974 78999653 111 22233453 45655444442 22220
Q ss_pred cccccceeeeeEEEEE-ecCCCceEEEEEEeCccccceeEEEEEEEEEecCCCcEEEEEEEEEecCCCCCChhhhhHHHH
Q 038195 78 YQWSQHFVEKMKEKVE-LDPENKTVAMVVIEGDLMKHFKSYKVIIKVIPKSEGSLVKWIWEYEKLQEDGPTPSKYVDFVT 156 (172)
Q Consensus 78 ~~~~~~~~~~~kEri~-~D~~~~~i~Y~vieGdl~~~~~s~~~t~~v~p~~dGs~v~w~~~ye~~~~~~~~p~~~~~~~~ 156 (172)
.-.+.-++. +++ ++++.|+...| ...+++++|.++||.++.+ +..... ...+.....-.
T Consensus 62 -------~~~~~g~~~ei~p-~~~l~~~~~~~--------~~v~~~l~~~~~gT~l~l~--~~~~~~--~~~~~~~~GW~ 121 (133)
T cd08897 62 -------GFDFEGTYTEVEP-HKLIEYTMEDG--------REVEVEFTEEGDGTKVVET--FDAENE--NPVEMQRQGWQ 121 (133)
T ss_pred -------ccccceEEEEECC-CCEEEEEcCCC--------CEEEEEEEECCCCEEEEEE--ECCCCC--CcHHHHHHHHH
Confidence 001123344 544 45677775322 2468899998877887765 333221 12333445667
Q ss_pred HHHHHHHHHHh
Q 038195 157 DLTKNIDAHLL 167 (172)
Q Consensus 157 ~~~k~ie~yll 167 (172)
.++..|++||-
T Consensus 122 ~~l~~L~~~le 132 (133)
T cd08897 122 AILDNFKKYVE 132 (133)
T ss_pred HHHHHHHHHhh
Confidence 78888998884
No 34
>cd07826 SRPBCC_CalC_Aha1-like_9 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=97.99 E-value=0.00021 Score=54.37 Aligned_cols=138 Identities=9% Similarity=0.024 Sum_probs=78.6
Q ss_pred CceEEEEcCCHHHHHHHhhcCCcccCCcCCCCeeeEEEEecccCCCCcEEEEEee-cCCCCCcccchhcccccccccccc
Q 038195 1 METEVEIKSPADKFYNTFSSKAHTVPNMSPGNLHGVEVHEGDWESHGSVKSWTFS-AGDFPATRTEEQTQSSHLRGLHYQ 79 (172)
Q Consensus 1 ~~~e~~i~apa~kvw~~~~d~~~~lpk~~P~~v~sve~~eGd~g~~Gsvr~~~~~-~gg~~~~~~~~~~~~~~~~~~~~~ 79 (172)
++.+..++||+++||+++.+.. .+.+|+...--.+...+.|. .+|..-.+.+. .+|.
T Consensus 2 l~i~r~~~ap~e~Vw~a~Tdpe-~l~~W~~p~~~~~~~~~~d~-r~GG~~~~~~~~~~g~-------------------- 59 (142)
T cd07826 2 IVITREFDAPRELVFRAHTDPE-LVKRWWGPRGLTMTVCECDI-RVGGSYRYVHRAPDGE-------------------- 59 (142)
T ss_pred EEEEEEECCCHHHHHHHhCCHH-HHhhccCCCCCcceEEEEec-cCCCEEEEEEECCCCC--------------------
Confidence 3567889999999999999974 78889876423344455663 45555444443 2232
Q ss_pred cccceeeeeEEEEE-ecCCCceEEEEEEeCccccceeEEEEEEEEEecCCCcEEEEEEEEEecCCCC-CChhhhhHHHHH
Q 038195 80 WSQHFVEKMKEKVE-LDPENKTVAMVVIEGDLMKHFKSYKVIIKVIPKSEGSLVKWIWEYEKLQEDG-PTPSKYVDFVTD 157 (172)
Q Consensus 80 ~~~~~~~~~kEri~-~D~~~~~i~Y~vieGdl~~~~~s~~~t~~v~p~~dGs~v~w~~~ye~~~~~~-~~p~~~~~~~~~ 157 (172)
.-.+.-.+. +++.. .+.|+---.+... .....++.+.+.++||.++.+..+....... .......+.-..
T Consensus 60 -----~~~~~g~~~ei~p~~-~l~~t~~~~~~~~--~~s~v~~~l~~~~~gT~l~l~~~~~~~~~~~~~~~~~~~~Gw~~ 131 (142)
T cd07826 60 -----EMGFHGVYHEVTPPE-RIVQTEEFEGLPD--GVALETVTFTELGGRTRLTATSRYPSKEARDGVLASGMEEGMEE 131 (142)
T ss_pred -----EecceEEEEEEcCCC-EEEEEeEecCCCC--CceEEEEEEEECCCCEEEEEEEEeCCHHHHHHHHHhhHHHHHHH
Confidence 111233455 66543 3444432122211 2245688999988779888875553211000 011122346677
Q ss_pred HHHHHHHHHhh
Q 038195 158 LTKNIDAHLLK 168 (172)
Q Consensus 158 ~~k~ie~ylla 168 (172)
.+..|++||.+
T Consensus 132 ~l~~L~~~l~~ 142 (142)
T cd07826 132 SYDRLDELLAS 142 (142)
T ss_pred HHHHHHHHHhC
Confidence 88899998853
No 35
>COG2867 Oligoketide cyclase/lipid transport protein [Lipid metabolism]
Probab=97.96 E-value=3.5e-05 Score=60.44 Aligned_cols=108 Identities=17% Similarity=0.274 Sum_probs=80.3
Q ss_pred ceEEEEcCCHHHHHHHhhcCCcccCCcCCCCeeeEEEEecccCCCCcEEEEEeecCCCCCcccchhcccccccccccccc
Q 038195 2 ETEVEIKSPADKFYNTFSSKAHTVPNMSPGNLHGVEVHEGDWESHGSVKSWTFSAGDFPATRTEEQTQSSHLRGLHYQWS 81 (172)
Q Consensus 2 ~~e~~i~apa~kvw~~~~d~~~~lpk~~P~~v~sve~~eGd~g~~Gsvr~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~ 81 (172)
+...-+..+|+++|+++.|-. ..|+++|- -...++.+.+. ..-+-.++.+-.|-
T Consensus 5 ~~s~lv~y~a~~mF~LV~dV~-~YP~FlP~-C~~s~v~~~~~--~~l~A~l~V~~k~i---------------------- 58 (146)
T COG2867 5 ERTALVPYSASQMFDLVNDVE-SYPEFLPW-CSASRVLERNE--RELIAELDVGFKGI---------------------- 58 (146)
T ss_pred EeeeeccCCHHHHHHHHHHHH-hCchhccc-cccceEeccCc--ceeEEEEEEEhhhe----------------------
Confidence 345667899999999999984 89999996 66667788763 33444454433332
Q ss_pred cceeeeeEEEEEecCCCceEEEEEEeCccccceeEEEEEEEEEec-CCCcEEEEEEEEEecC
Q 038195 82 QHFVEKMKEKVELDPENKTVAMVVIEGDLMKHFKSYKVIIKVIPK-SEGSLVKWIWEYEKLQ 142 (172)
Q Consensus 82 ~~~~~~~kEri~~D~~~~~i~Y~vieGdl~~~~~s~~~t~~v~p~-~dGs~v~w~~~ye~~~ 142 (172)
-++..-++..++..++|..++++|.. +...++|+|+|- +++|.|+..++||...
T Consensus 59 ---~e~F~Trv~~~~~~~~I~~~l~~GPF----k~L~~~W~F~pl~~~~ckV~f~ldfeF~s 113 (146)
T COG2867 59 ---RETFTTRVTLKPTARSIDMKLIDGPF----KYLKGGWQFTPLSEDACKVEFFLDFEFKS 113 (146)
T ss_pred ---eeeeeeeeeecCchhhhhhhhhcCCh----hhhcCceEEEECCCCceEEEEEEEeeehh
Confidence 34456666766666688888888765 667889999995 4559999999999886
No 36
>COG5637 Predicted integral membrane protein [Function unknown]
Probab=97.88 E-value=4.5e-05 Score=62.07 Aligned_cols=105 Identities=18% Similarity=0.329 Sum_probs=80.4
Q ss_pred CceEEEEcCCHHHHHHHhhcCCcccCCcCCCCeeeEEEEecccCCCCcEEEEEeec-CCCCCcccchhcccccccccccc
Q 038195 1 METEVEIKSPADKFYNTFSSKAHTVPNMSPGNLHGVEVHEGDWESHGSVKSWTFSA-GDFPATRTEEQTQSSHLRGLHYQ 79 (172)
Q Consensus 1 ~~~e~~i~apa~kvw~~~~d~~~~lpk~~P~~v~sve~~eGd~g~~Gsvr~~~~~~-gg~~~~~~~~~~~~~~~~~~~~~ 79 (172)
++.+++|++|++.+|..++|.. .+|.||-+ +.||++.+-+ + .+|+.+. +| +.+-
T Consensus 72 v~~~V~I~kPae~vy~~W~dLe-~lP~~Mkh-l~SVkVlddk---r---SrW~~~ap~g-----------------~~v~ 126 (217)
T COG5637 72 VEVQVTIDKPAEQVYAYWRDLE-NLPLWMKH-LDSVKVLDDK---R---SRWKANAPLG-----------------LEVE 126 (217)
T ss_pred EEEEEEeCChHHHHHHHHHhhh-hhhHHHHh-hceeeccCCC---c---cceeEcCCCC-----------------ceEE
Confidence 3578999999999999999985 79999996 9999998644 1 4666654 22 2344
Q ss_pred cccceeeeeEEEEEecCCCceEEEEEEeCc-cccceeEEEEEEEEEecCCC-cEEEEEEEEEecCC
Q 038195 80 WSQHFVEKMKEKVELDPENKTVAMVVIEGD-LMKHFKSYKVIIKVIPKSEG-SLVKWIWEYEKLQE 143 (172)
Q Consensus 80 ~~~~~~~~~kEri~~D~~~~~i~Y~vieGd-l~~~~~s~~~t~~v~p~~dG-s~v~w~~~ye~~~~ 143 (172)
| .-+|.-|..+..|.+.=++|. +.. +..+.|.+.++. +.|+.++.|.+-+.
T Consensus 127 W--------ea~it~d~~~e~I~W~Sl~Ga~v~N-----sG~VrF~~~pg~~t~V~v~lsY~~Pgg 179 (217)
T COG5637 127 W--------EAEITKDIPGERIQWESLPGARVEN-----SGAVRFYDAPGDSTEVKVTLSYRPPGG 179 (217)
T ss_pred E--------eehhhccCCCcEEeeecCCCCcCCC-----CccEEeeeCCCCceEEEEEEEecCCcc
Confidence 4 344557899999999999996 532 245678887776 79999999987664
No 37
>cd08891 SRPBCC_CalC Ligand-binding SRPBCC domain of Micromonospora echinospora CalC and related proteins. This subfamily includes Micromonospora echinospora CalC (MeCalC) and related proteins. These proteins belong to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins which bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. MeCalC confers resistance to the enediyne, calicheamicin gamma 1 (CLM). Enediyne antibiotics are antitumor agents. Enediynes have an in vitro and in vivo role as DNA damaging agents; they consist of a DNA recognition unit (e.g., aryltetrasaccharide of CLM), an activating component (e.g., methyl trisulfide of CLM), which promotes cycloaromatization, and the enediyne warhead which cycloaromatizes to a reactive diradical species, resulting in oxidative strand cleavage of the targeted DNA sequence. MeCalC confers resistance to CLM by a self sacrificing mechanism: the transient enediyne diradical speci
Probab=97.80 E-value=0.001 Score=50.80 Aligned_cols=131 Identities=14% Similarity=0.073 Sum_probs=69.7
Q ss_pred CceEEEEcCCHHHHHHHhhcCCcccCCcCCCCe-------eeEEEEecccCCCCcEEEEEeecCCCCCcccchhcccccc
Q 038195 1 METEVEIKSPADKFYNTFSSKAHTVPNMSPGNL-------HGVEVHEGDWESHGSVKSWTFSAGDFPATRTEEQTQSSHL 73 (172)
Q Consensus 1 ~~~e~~i~apa~kvw~~~~d~~~~lpk~~P~~v-------~sve~~eGd~g~~Gsvr~~~~~~gg~~~~~~~~~~~~~~~ 73 (172)
++.++.|+||+++||+++.+ .+.+|++..- ..|++-- .+|..... ...+|.
T Consensus 2 ~~~~~~i~Ap~e~Vw~a~t~---~l~~W~~p~~~~~~~~~~~~~~d~----~~GG~~~~-~~~~g~-------------- 59 (149)
T cd08891 2 VRKSVTVPAPPERAFEVFTE---GFGAWWPPEYHFVFSPGAEVVFEP----RAGGRWYE-IGEDGT-------------- 59 (149)
T ss_pred eEEEEEecCCHHHHHHHHHh---chhhccCCCcccccCCCccEEEcc----cCCcEEEE-ecCCCc--------------
Confidence 46789999999999999997 3667765311 2222211 12221111 111222
Q ss_pred cccccccccceeeeeEEEEE-ecCCCceEEEEEE-eCcc--ccceeEEEEEEEEEecC-CCcEEEEEEEEEecCCC-CCC
Q 038195 74 RGLHYQWSQHFVEKMKEKVE-LDPENKTVAMVVI-EGDL--MKHFKSYKVIIKVIPKS-EGSLVKWIWEYEKLQED-GPT 147 (172)
Q Consensus 74 ~~~~~~~~~~~~~~~kEri~-~D~~~~~i~Y~vi-eGdl--~~~~~s~~~t~~v~p~~-dGs~v~w~~~ye~~~~~-~~~ 147 (172)
.+..=++. +++.+ .+.|+-. ..+. .... .-..+++++|.+ +||.++.+-.+...... ...
T Consensus 60 ------------~~~~g~v~~v~p~~-~l~~tw~~~~~~~~~~~~-~t~vt~~l~~~~~~gT~ltl~~~~~~~~~~~~~~ 125 (149)
T cd08891 60 ------------ECEWGTVLAWEPPS-RLVFTWQINADWRPDPDK-ASEVEVRFEAVGAEGTRVELEHRGFERHGDGWEA 125 (149)
T ss_pred ------------EeceEEEEEEcCCC-EEEEEeccCCCcCcCCCC-ceEEEEEEEECCCCCeEEEEEEecccccCcchhh
Confidence 11223455 76554 3555543 1111 1111 235789999988 77988887776543211 011
Q ss_pred ---hhhhhHHHHHHHHHHHHHHh
Q 038195 148 ---PSKYVDFVTDLTKNIDAHLL 167 (172)
Q Consensus 148 ---p~~~~~~~~~~~k~ie~yll 167 (172)
.....+.-..++..|++||-
T Consensus 126 ~~~~~~~~~GW~~~L~~L~~~l~ 148 (149)
T cd08891 126 AAMRMGYDGGWPLLLERYAAAAE 148 (149)
T ss_pred HHHHhcccCcHHHHHHHHHHHhc
Confidence 11223355667788888873
No 38
>cd08876 START_1 Uncharacterized subgroup of the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domain family. Functionally uncharacterized subgroup of the START domain family. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some mammalian members of the START family (STARDs), it is known which lipids bind in this pocket; these include cholesterol (STARD1, -3, -4, and -5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2, -7, and -10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). Mammalian STARDs participate in the control of various cellular processes, including lipid trafficking between intracellular compartments, lipid metabolism, and modulation of signaling events. Mutation or altered expression of STARDs is linked to diseases such as cancer, genetic disorders, a
Probab=97.71 E-value=0.0042 Score=49.25 Aligned_cols=117 Identities=11% Similarity=0.076 Sum_probs=72.0
Q ss_pred ceEEEEcCCHHHHHHHhhcCCcccCCcCCCCeeeEEEEecccCCCCcEEEEEeecCCCCCcccchhcccccccccccccc
Q 038195 2 ETEVEIKSPADKFYNTFSSKAHTVPNMSPGNLHGVEVHEGDWESHGSVKSWTFSAGDFPATRTEEQTQSSHLRGLHYQWS 81 (172)
Q Consensus 2 ~~e~~i~apa~kvw~~~~d~~~~lpk~~P~~v~sve~~eGd~g~~Gsvr~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~ 81 (172)
.++..|++||+.+|+++.|.. ..|+|.|. +.++++++-.+ .--.+-...+....+ . -.
T Consensus 44 k~~~~i~~s~e~v~~vi~d~e-~~~~w~~~-~~~~~vie~~~-~~~~i~~~~~~~p~p-v------------------s~ 101 (195)
T cd08876 44 KAVAEVDASIEAFLALLRDTE-SYPQWMPN-CKESRVLKRTD-DNERSVYTVIDLPWP-V------------------KD 101 (195)
T ss_pred EEEEEEeCCHHHHHHHHhhhH-hHHHHHhh-cceEEEeecCC-CCcEEEEEEEecccc-c------------------CC
Confidence 457789999999999999984 78999995 99999998652 112333333332211 0 01
Q ss_pred cceeeeeEE-EEEecCCCceEEEEEEeCcc--c--cc---eeEEEEEEEEEecCCC-cEEEEEEEEEecCC
Q 038195 82 QHFVEKMKE-KVELDPENKTVAMVVIEGDL--M--KH---FKSYKVIIKVIPKSEG-SLVKWIWEYEKLQE 143 (172)
Q Consensus 82 ~~~~~~~kE-ri~~D~~~~~i~Y~vieGdl--~--~~---~~s~~~t~~v~p~~dG-s~v~w~~~ye~~~~ 143 (172)
|+ ++.. +...+.++..+...+..++- + .. ...+.+.+.++|.++| |.+++...+++.+.
T Consensus 102 Rd---fv~~~~~~~~~~~~~~~i~~~s~~~~~P~~~~~vR~~~~~~~~~i~~~~~~~t~vt~~~~~dp~g~ 169 (195)
T cd08876 102 RD---MVLRSTTEQDADDGSVTITLEAAPEALPEQKGYVRIKTVEGQWTFTPLGNGKTRVTYQAYADPGGS 169 (195)
T ss_pred ce---EEEEEEEEEcCCCCEEEEEeecCCccCCCCCCeEEceeceeeEEEEECCCCeEEEEEEEEeCCCCC
Confidence 12 1221 12232223444444443321 1 11 4567778899998877 99999999988763
No 39
>cd08892 SRPBCC_Aha1 Putative hydrophobic ligand-binding SRPBCC domain of the Hsp90 co-chaperone Aha1 and related proteins. This subfamily includes the C-terminal SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of Aha1, and related domains. Proteins in this group belong to the SRPBCC domain superfamily of proteins which bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Aha1 is one of several co-chaperones, which regulate the dimeric chaperone Hsp90. Hsp90, Aha1, and other accessory proteins interact in a chaperone cycle driven by ATP binding and hydrolysis. Aha1 promotes dimerization of the N-terminal domains of Hsp90, and stimulates its low intrinsic ATPase activity. One Aha1 molecule binds per Hsp90 dimer. The N- and C- terminal domains of Aha1 cooperatively bind across the dimer interface of Hsp90. The C-terminal domain of Aha1 binds the N-terminal Hsp90 ATPase domain. Aha1 may regulate the dwell time of Hsp90 with client proteins. Aha1 m
Probab=97.43 E-value=0.0036 Score=46.66 Aligned_cols=121 Identities=12% Similarity=0.121 Sum_probs=67.6
Q ss_pred CceEEEEcCCHHHHHHHhhcCCcccCCcCCCCeeeEEEEecccCCCCcEEEEEeecCCCCCcccchhccccccccccccc
Q 038195 1 METEVEIKSPADKFYNTFSSKAHTVPNMSPGNLHGVEVHEGDWESHGSVKSWTFSAGDFPATRTEEQTQSSHLRGLHYQW 80 (172)
Q Consensus 1 ~~~e~~i~apa~kvw~~~~d~~~~lpk~~P~~v~sve~~eGd~g~~Gsvr~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~ 80 (172)
++.+..++||+++||+++.+.. .+.+|+.. ..+.+...| |.. .+.. |.
T Consensus 2 i~~~r~i~ap~e~Vw~A~T~~e-~l~~W~~~-~~~~d~~~G-----G~~---~~~~-g~--------------------- 49 (126)
T cd08892 2 ISLTETFQVPAEELYEALTDEE-RVQAFTRS-PAKVDAKVG-----GKF---SLFG-GN--------------------- 49 (126)
T ss_pred eEEEEEECCCHHHHHHHHCCHH-HHHhhcCC-CceecCCCC-----CEE---EEeC-Cc---------------------
Confidence 3567889999999999999974 77889864 334443333 222 2222 22
Q ss_pred ccceeeeeEEEEE-ecCCCceEEEEEEeCccccceeEEEEEEEEEecCCCcEEEEEEEEEecCCCCCChhhhhHHHH-HH
Q 038195 81 SQHFVEKMKEKVE-LDPENKTVAMVVIEGDLMKHFKSYKVIIKVIPKSEGSLVKWIWEYEKLQEDGPTPSKYVDFVT-DL 158 (172)
Q Consensus 81 ~~~~~~~~kEri~-~D~~~~~i~Y~vieGdl~~~~~s~~~t~~v~p~~dGs~v~w~~~ye~~~~~~~~p~~~~~~~~-~~ 158 (172)
+.-++. +++. +.+.|+---.+.... ..-..++.+++.++||.++.+-...+.. ..+...+.-. .+
T Consensus 50 -------~~g~~~~i~p~-~~l~~~w~~~~~~~~-~~s~v~~~l~~~~~gT~ltl~~~g~~~~----~~~~~~~GW~~~~ 116 (126)
T cd08892 50 -------ITGEFVELVPG-KKIVQKWRFKSWPEG-HYSTVTLTFTEKDDETELKLTQTGVPAG----EEERTREGWERYY 116 (126)
T ss_pred -------eEEEEEEEcCC-CEEEEEEEcCCCCCC-CcEEEEEEEEECCCCEEEEEEEECCCCc----hHHHHHhhHHHHH
Confidence 223444 6543 344444332222111 2245788999987778777666644322 2233333333 36
Q ss_pred HHHHHHHH
Q 038195 159 TKNIDAHL 166 (172)
Q Consensus 159 ~k~ie~yl 166 (172)
+..|.++|
T Consensus 117 ~~~l~~~~ 124 (126)
T cd08892 117 FESIKQTF 124 (126)
T ss_pred HHHHHHHh
Confidence 67777665
No 40
>PF08327 AHSA1: Activator of Hsp90 ATPase homolog 1-like protein; InterPro: IPR013538 This family includes eukaryotic, prokaryotic and archaeal proteins that bear similarity to a C-terminal region of human activator of 90 kDa heat shock protein ATPase homologue 1 (AHSA1/p38, O95433 from SWISSPROT). This protein is known to interact with the middle domain of Hsp90, and stimulate its ATPase activity []. It is probably a general up regulator of Hsp90 function, particularly contributing to its efficiency in conditions of increased stress []. p38 is also known to interact with the cytoplasmic domain of the VSV G protein, and may thus be involved in protein transport []. It has also been reported as being under expressed in Down's syndrome. This region is found repeated in two members of this family (Q8XY04 from SWISSPROT and Q6MH87 from SWISSPROT). ; GO: 0006950 response to stress; PDB: 2KEW_A 2KTE_A 2IL5_A 1ZXF_A 2L65_A 2GKD_A 1XN6_A 3OTL_B 2LCG_A 3Q63_D ....
Probab=97.20 E-value=0.015 Score=41.99 Aligned_cols=121 Identities=9% Similarity=0.072 Sum_probs=66.4
Q ss_pred cCCHHHHHHHhhcCCcccCCcCCCCeeeEEEEecccCCCCcEEEEEeecCCCCCcccchhcccccccccccccccceeee
Q 038195 8 KSPADKFYNTFSSKAHTVPNMSPGNLHGVEVHEGDWESHGSVKSWTFSAGDFPATRTEEQTQSSHLRGLHYQWSQHFVEK 87 (172)
Q Consensus 8 ~apa~kvw~~~~d~~~~lpk~~P~~v~sve~~eGd~g~~Gsvr~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (172)
+||+++||+++.+.. .+.+|.+ +...+.+ -.+|..-++ ...++. .-.
T Consensus 1 ~ap~e~Vw~a~t~~~-~~~~W~~-----~~~~~~~-~~~Gg~~~~-~~~~g~-------------------------~~~ 47 (124)
T PF08327_consen 1 DAPPERVWEALTDPE-GLAQWFT-----TSEAEMD-FRPGGSFRF-MDPDGG-------------------------EFG 47 (124)
T ss_dssp SSSHHHHHHHHHSHH-HHHHHSE-----EEEEEEE-CSTTEEEEE-EETTSE-------------------------EEE
T ss_pred CcCHHHHHHHHCCHh-HHhhccC-----CCcceee-eecCCEEEE-EecCCC-------------------------Cce
Confidence 689999999999974 7788932 2223333 234553333 223333 111
Q ss_pred eEEEEE-ecCCCceEEEEEEeCccccceeEEEEEEEEEecCCCcEEEEEEEEEecCCCCCChhh-hhHHHHHHHHHHHHH
Q 038195 88 MKEKVE-LDPENKTVAMVVIEGDLMKHFKSYKVIIKVIPKSEGSLVKWIWEYEKLQEDGPTPSK-YVDFVTDLTKNIDAH 165 (172)
Q Consensus 88 ~kEri~-~D~~~~~i~Y~vieGdl~~~~~s~~~t~~v~p~~dGs~v~w~~~ye~~~~~~~~p~~-~~~~~~~~~k~ie~y 165 (172)
..=++. +++..+ |.|+.--++... -.....++.|++.++||.++.+..=.+... .... .......++..|.+|
T Consensus 48 ~~~~v~~~~p~~~-i~~~~~~~~~~~-~~~~~v~~~~~~~~~~T~l~~~~~~~~~~~---~~~~~~~~gw~~~l~~L~~~ 122 (124)
T PF08327_consen 48 FDGTVLEVEPPER-IVFTWRMPDDPD-GPESRVTFEFEEEGGGTRLTLTHSGFPDDD---EEEEGMEQGWEQMLDRLKAY 122 (124)
T ss_dssp EEEEEEEEETTTE-EEEEEEEETSSS-CEEEEEEEEEEEETTEEEEEEEEEEEHSHH---HHHHCHHHHHHHHHHHHHHH
T ss_pred eeEEEEEEeCCEE-EEEEEEccCCCC-CCceEEEEEEEEcCCcEEEEEEEEcCCccH---HHHHHHHHHHHHHHHHHHHH
Confidence 223366 655544 667744333221 234567889999666687776662221110 0111 344667777888887
Q ss_pred H
Q 038195 166 L 166 (172)
Q Consensus 166 l 166 (172)
|
T Consensus 123 l 123 (124)
T PF08327_consen 123 L 123 (124)
T ss_dssp H
T ss_pred h
Confidence 6
No 41
>cd08901 SRPBCC_CalC_Aha1-like_8 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=97.16 E-value=0.01 Score=44.63 Aligned_cols=122 Identities=12% Similarity=0.073 Sum_probs=71.8
Q ss_pred ceEEEEcCCHHHHHHHhhcCCcccCCcCCCCeeeEEEEecccCCCCcEEEEEeecCCCCCcccchhcccccccccccccc
Q 038195 2 ETEVEIKSPADKFYNTFSSKAHTVPNMSPGNLHGVEVHEGDWESHGSVKSWTFSAGDFPATRTEEQTQSSHLRGLHYQWS 81 (172)
Q Consensus 2 ~~e~~i~apa~kvw~~~~d~~~~lpk~~P~~v~sve~~eGd~g~~Gsvr~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~ 81 (172)
+.++.|+||+++||+++.+.. .+.+|.+. -.+.++. +|..-.+.|...+.
T Consensus 3 ~~~~~i~ap~e~Vw~a~t~p~-~l~~W~~~-~~~~~~~------~Gg~~~~~~~~~~~---------------------- 52 (136)
T cd08901 3 KTAMLIRRPVAEVFEAFVDPE-ITTKFWFT-GSSGRLE------EGKTVTWDWEMYGA---------------------- 52 (136)
T ss_pred eEEEEecCCHHHHHHHhcCHH-Hhcccccc-CCCcccc------CCCEEEEEEEccCC----------------------
Confidence 578999999999999999974 78887553 2233332 34334566644332
Q ss_pred cceeeeeEEEEE-ecCCCceEEEEEEeCccccceeEEEEEEEEEecC-CCcEEEEEEEEEecCCCCCChhh------hhH
Q 038195 82 QHFVEKMKEKVE-LDPENKTVAMVVIEGDLMKHFKSYKVIIKVIPKS-EGSLVKWIWEYEKLQEDGPTPSK------YVD 153 (172)
Q Consensus 82 ~~~~~~~kEri~-~D~~~~~i~Y~vieGdl~~~~~s~~~t~~v~p~~-dGs~v~w~~~ye~~~~~~~~p~~------~~~ 153 (172)
.+.=++. +++ .+.+.|+--.++ .. -..++++++.+ +||.++.+-...+.. .++. ...
T Consensus 53 -----~~~g~~~~~~p-~~~l~~~w~~~~---~~--s~v~~~l~~~~~ggT~ltl~~~~~~~~----~~~~~~~~~~~~~ 117 (136)
T cd08901 53 -----SVPVNVLEIEP-NKRIVIEWGDPG---EP--TTVEWTFEELDDGRTFVTITESGFPGT----DDEGLKQALGSTE 117 (136)
T ss_pred -----ceEEEEEEEcC-CCEEEEEecCCC---CC--EEEEEEEEECCCCcEEEEEEECCCCCC----cHHHHHHHhcCCC
Confidence 0223444 644 456667654322 12 23688899987 558877775433221 1111 123
Q ss_pred HHHHHHHHHHHHHhh
Q 038195 154 FVTDLTKNIDAHLLK 168 (172)
Q Consensus 154 ~~~~~~k~ie~ylla 168 (172)
.-..++..|++||..
T Consensus 118 GW~~~L~~L~~~le~ 132 (136)
T cd08901 118 GWTLVLAGLKAYLEH 132 (136)
T ss_pred CHHHHHHHHHHHHhc
Confidence 456677888888864
No 42
>COG3832 Uncharacterized conserved protein [Function unknown]
Probab=96.43 E-value=0.068 Score=41.36 Aligned_cols=29 Identities=17% Similarity=0.335 Sum_probs=25.5
Q ss_pred CceEEEEcCCHHHHHHHhhcCCcccCCcCC
Q 038195 1 METEVEIKSPADKFYNTFSSKAHTVPNMSP 30 (172)
Q Consensus 1 ~~~e~~i~apa~kvw~~~~d~~~~lpk~~P 30 (172)
++.+..|++|+++||+++.+.. ++.+|+.
T Consensus 10 ~~~er~i~aP~e~Vf~A~Tdpe-~l~~W~~ 38 (149)
T COG3832 10 LEIERLIDAPPEKVFEALTDPE-LLARWFM 38 (149)
T ss_pred EEEEEeecCCHHHHHHHhcCHH-HHHhhcC
Confidence 3568889999999999999984 8999987
No 43
>PTZ00220 Activator of HSP-90 ATPase; Provisional
Probab=96.15 E-value=0.061 Score=40.68 Aligned_cols=119 Identities=15% Similarity=0.113 Sum_probs=62.5
Q ss_pred EcCCHHHHHHHhhcCCcccCCc-CCCCeeeEEEEecccCCCCcEEEEEeecCCCCCcccchhccccccccccccccccee
Q 038195 7 IKSPADKFYNTFSSKAHTVPNM-SPGNLHGVEVHEGDWESHGSVKSWTFSAGDFPATRTEEQTQSSHLRGLHYQWSQHFV 85 (172)
Q Consensus 7 i~apa~kvw~~~~d~~~~lpk~-~P~~v~sve~~eGd~g~~Gsvr~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (172)
++||+++||+++.+.. .+.+| .+. ...++.. +|..-. +..+ .
T Consensus 1 f~ap~e~Vw~A~Tdp~-~l~~w~~~~-~~~~d~~------~GG~f~--~~~~-~-------------------------- 43 (132)
T PTZ00220 1 FYVPPEVLYNAFLDAY-TLTRLSLGS-PAEMDAK------VGGKFS--LFNG-S-------------------------- 43 (132)
T ss_pred CCCCHHHHHHHHcCHH-HHHHHhcCC-CccccCC------cCCEEE--EecC-c--------------------------
Confidence 4799999999999974 77788 432 2223322 333222 2112 1
Q ss_pred eeeEEEEE-ecCCCc-eEEEEEEeCccccceeEEEEEEEEEecCC-CcEEEEEEEEEecCCC---CCChhhhhHHHHH-H
Q 038195 86 EKMKEKVE-LDPENK-TVAMVVIEGDLMKHFKSYKVIIKVIPKSE-GSLVKWIWEYEKLQED---GPTPSKYVDFVTD-L 158 (172)
Q Consensus 86 ~~~kEri~-~D~~~~-~i~Y~vieGdl~~~~~s~~~t~~v~p~~d-Gs~v~w~~~ye~~~~~---~~~p~~~~~~~~~-~ 158 (172)
+.-++. +|+..+ .++++.-+. -...+ -..++.++|.++ ||.++.+..-.+..+. ....+...+.-.. +
T Consensus 44 --~~G~~~ev~pp~rlv~tw~~~~~-~~~~~--s~vt~~~~~~~~g~T~lt~~~~g~~~~~~~~~~~~~~~~~~GW~~~~ 118 (132)
T PTZ00220 44 --VEGEFTELEKPKKIVQKWRFRDW-EEDVY--SKVTIEFRAVEEDHTELKLTQTGIPSLDKFGNGGCLERCRNGWTQNF 118 (132)
T ss_pred --eEEEEEEEcCCCEEEEEEecCCC-CCCCc--eEEEEEEEeCCCCcEEEEEEEecCccccccCCCchhhHHHhChHHHH
Confidence 223444 655543 334444221 11112 247899999755 4888877763322211 0123334444455 6
Q ss_pred HHHHHHHHh
Q 038195 159 TKNIDAHLL 167 (172)
Q Consensus 159 ~k~ie~yll 167 (172)
+..|++||-
T Consensus 119 ld~L~~~l~ 127 (132)
T PTZ00220 119 LDRFEKILG 127 (132)
T ss_pred HHHHHHHhC
Confidence 888888873
No 44
>cd08874 START_STARD9-like C-terminal START domain of mammalian STARD9, and related domains; lipid binding. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD9 (also known as KIAA1300), and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C /PITP /Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Some members of this subfamily have N-terminal kinesin motor domains. STARD9 interacts with supervillin, a protein important for efficient cytokinesis, perhaps playing a role in coordinating microtubule motors with actin and myosin II functions at membranes. The human gene encoding STARD9 lies within a target region for LGMD2A, an autosomal recessive form of limb-girdle muscular dystrophy.
Probab=96.12 E-value=0.57 Score=38.50 Aligned_cols=121 Identities=13% Similarity=0.017 Sum_probs=74.9
Q ss_pred eEEEEcCCHHHHHHHhhcCCcccCCcCCCCeeeEEEEecccCCCCcEEEEEeecCCCCCcccchhccccccccccccccc
Q 038195 3 TEVEIKSPADKFYNTFSSKAHTVPNMSPGNLHGVEVHEGDWESHGSVKSWTFSAGDFPATRTEEQTQSSHLRGLHYQWSQ 82 (172)
Q Consensus 3 ~e~~i~apa~kvw~~~~d~~~~lpk~~P~~v~sve~~eGd~g~~Gsvr~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~ 82 (172)
.+.++++|++++|+++.|.. ..++|.+ .++++++++--+... .|-++.+. .+ -+. ..
T Consensus 49 ge~~v~as~~~v~~ll~D~~-~r~~Wd~-~~~~~~vl~~~~~d~-~i~y~~~~--~P-wp~--------------~~--- 105 (205)
T cd08874 49 GAGVIKAPLATVWKAVKDPR-TRFLYDT-MIKTARIHKTFTEDI-CLVYLVHE--TP-LCL--------------LK--- 105 (205)
T ss_pred EEEEEcCCHHHHHHHHhCcc-hhhhhHH-hhhheeeeeecCCCe-EEEEEEec--CC-CCC--------------CC---
Confidence 46788999999999999985 7899999 599999998531111 33333332 11 000 00
Q ss_pred ceeeeeEEEEE-ecCCCceEEEEEEeC-ccc--c----ceeEEEEEEEEEec---CCC-cEEEEEEEEEecCCCCC
Q 038195 83 HFVEKMKEKVE-LDPENKTVAMVVIEG-DLM--K----HFKSYKVIIKVIPK---SEG-SLVKWIWEYEKLQEDGP 146 (172)
Q Consensus 83 ~~~~~~kEri~-~D~~~~~i~Y~vieG-dl~--~----~~~s~~~t~~v~p~---~dG-s~v~w~~~ye~~~~~~~ 146 (172)
....++..+.. .+.....+..+-++- .++ . ....+.+-+.++|. ++| |.++..+.-++.+++.|
T Consensus 106 ~~RDfV~l~~~~~~~~~~vi~~~SV~~~~~P~~~~~~VR~~~~~~gw~i~P~~~~g~~~t~vty~~q~DPggg~iP 181 (205)
T cd08874 106 QPRDFCCLQVEAKEGELSVVACQSVYDKSMPEPGRSLVRGEILPSAWILEPVTVEGNQYTRVIYIAQVALCGPDVP 181 (205)
T ss_pred CCCeEEEEEEEEECCCcEEEEEEecccccCCCCCCCeEEeeeEeeeEEEEECccCCCCcEEEEEEEEECCCCCCCC
Confidence 01223333333 344444444444444 222 1 24577888999998 777 99999999999965554
No 45
>cd08873 START_STARD14_15-like Lipid-binding START domain of mammalian STARDT14, -15, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian brown fat-inducible STARD14 (also known as Acyl-Coenzyme A Thioesterase 11 or ACOT11, BFIT, THEA, THEM1, KIAA0707, and MGC25974), STARD15/ACOT12 (also known as cytoplasmic acetyl-CoA hydrolase/CACH, THEAL, and MGC105114), and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD14/ACOT11 and STARD15/ACOT12 are type II acetyl-CoA thioesterases; they catalyze the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Human STARD14 displays acetyl-CoA thioesterase activity towards medium(C12)- and long(C16)-chain fatty acyl-CoA substrates. Rat CACH hydrolyzes acetyl-CoA to acetate an
Probab=96.07 E-value=0.71 Score=38.92 Aligned_cols=142 Identities=9% Similarity=0.008 Sum_probs=85.5
Q ss_pred eEEEEcCCHHHHHHHhhcCCcccCCcCCCCeeeEEEEecccCCCCcEEEEEeecCCCCCcccchhccccccccccccccc
Q 038195 3 TEVEIKSPADKFYNTFSSKAHTVPNMSPGNLHGVEVHEGDWESHGSVKSWTFSAGDFPATRTEEQTQSSHLRGLHYQWSQ 82 (172)
Q Consensus 3 ~e~~i~apa~kvw~~~~d~~~~lpk~~P~~v~sve~~eGd~g~~Gsvr~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~ 82 (172)
.+..+++|++++|+++.|.. ..++|.++ ..++++++--+... .+-++.+.. + .+. ..|
T Consensus 81 ~e~~vd~s~~~v~dlL~D~~-~R~~WD~~-~~e~evI~~id~d~-~iyy~~~p~--P-wPv----------------k~R 138 (235)
T cd08873 81 VELKVQTCASDAFDLLSDPF-KRPEWDPH-GRSCEEVKRVGEDD-GIYHTTMPS--L-TSE----------------KPN 138 (235)
T ss_pred EEEEecCCHHHHHHHHhCcc-hhhhhhhc-ccEEEEEEEeCCCc-EEEEEEcCC--C-CCC----------------CCc
Confidence 56789999999999999985 78999995 99999998421112 223333221 1 000 012
Q ss_pred ceeeeeEEEEE---ecCCC-ceEEEEEEeCc-cc--c---ceeEEEEEEEEEecCCC-cEEEEEEEEEecCCC--CCChh
Q 038195 83 HFVEKMKEKVE---LDPEN-KTVAMVVIEGD-LM--K---HFKSYKVIIKVIPKSEG-SLVKWIWEYEKLQED--GPTPS 149 (172)
Q Consensus 83 ~~~~~~kEri~---~D~~~-~~i~Y~vieGd-l~--~---~~~s~~~t~~v~p~~dG-s~v~w~~~ye~~~~~--~~~p~ 149 (172)
+ ++..+-. .+... ..|...-+.=+ ++ + ....+.+-+.+.|.++| |.|+.....+|.--. +-+..
T Consensus 139 D---fV~~~s~~~~~~~~~~~~I~~~SV~h~~~Pp~kgyVR~~~~~ggW~I~p~~~~~t~VtY~~~~dPg~~~~~~~~~~ 215 (235)
T cd08873 139 D---FVLLVSRRKPATDGDPYKVAFRSVTLPRVPQTPGYSRTEVACAGFVIRQDCGTCTEVSYYNETNPKLLSYVTCNLA 215 (235)
T ss_pred e---EEEEEEEEeccCCCCeEEEEEeeeecccCCCCCCeEEEEEEeeeEEEEECCCCcEEEEEEEEcCCCccceeeecch
Confidence 2 2222222 22222 44555555522 21 1 25688899999999877 988888877765321 11233
Q ss_pred hhhHHHHHHHHHHHHHHhhc
Q 038195 150 KYVDFVTDLTKNIDAHLLKE 169 (172)
Q Consensus 150 ~~~~~~~~~~k~ie~ylla~ 169 (172)
.+-...-..|+..+.||..|
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~ 235 (235)
T cd08873 216 GLSALYCRTFHCCEQFLVTN 235 (235)
T ss_pred hhhHHHHHHHHHHHHHhccC
Confidence 34456677788888888754
No 46
>cd08863 SRPBCC_DUF1857 DUF1857, an uncharacterized ligand-binding domain of the SRPBCC domain superfamily. Uncharacterized family of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins
Probab=95.03 E-value=1.2 Score=34.92 Aligned_cols=110 Identities=18% Similarity=0.287 Sum_probs=69.0
Q ss_pred CHHHHHHHhhcCCcccCCcCCCCeeeEEEEecccCCCCcEEEEEeecCCCCCcccchhcccccccccccccccceeeeeE
Q 038195 10 PADKFYNTFSSKAHTVPNMSPGNLHGVEVHEGDWESHGSVKSWTFSAGDFPATRTEEQTQSSHLRGLHYQWSQHFVEKMK 89 (172)
Q Consensus 10 pa~kvw~~~~d~~~~lpk~~P~~v~sve~~eGd~g~~Gsvr~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k 89 (172)
..+.+|+-+...+..-..++|. +.+|++++.++ .-..|.++|+.. . ++
T Consensus 18 Tr~QlW~GL~~kar~p~~Fvp~-i~~c~Vl~e~~--~~l~Rel~f~~~-~----------------------------v~ 65 (141)
T cd08863 18 TRAQLWRGLVLRAREPQLFVPG-LDRCEVLSESG--TVLERELTFGPA-K----------------------------IR 65 (141)
T ss_pred CHHHHHhHHHhhhCCchhcccc-cceEEEEecCC--CEEEEEEEECCc-e----------------------------EE
Confidence 3578999888765444457775 99999998762 245699999652 3 78
Q ss_pred EEEEecCCCceEEEEEEe-CccccceeEEEEEEEEEecCCCcEEEEEEEEEecCCCCCChh--hhhHHHHHHHHH
Q 038195 90 EKVELDPENKTVAMVVIE-GDLMKHFKSYKVIIKVIPKSEGSLVKWIWEYEKLQEDGPTPS--KYVDFVTDLTKN 161 (172)
Q Consensus 90 Eri~~D~~~~~i~Y~vie-Gdl~~~~~s~~~t~~v~p~~dGs~v~w~~~ye~~~~~~~~p~--~~~~~~~~~~k~ 161 (172)
|++.+++.. .+.|.+-. |+. .++.++...+|. .-.++.|+...++..+++ .+.+...++++.
T Consensus 66 e~vt~~~~~-~v~f~~~~~g~~--------l~~~iee~~~g~-L~lrf~ye~~~p~~~~~e~~~~~~~~~~a~~~ 130 (141)
T cd08863 66 ETVTLEPPS-RVHFLQADAGGT--------LTNTIEEPEDGA-LYLRFVYETTLPEVAEEEAKAYQEIVKQAYKE 130 (141)
T ss_pred EEEEecCCc-EEEEEecCCCCe--------EEEEeccCCCCc-EEEEEEEEecCCCcCchHHHHHHHHHHHHHHH
Confidence 999975554 46677655 331 234444444554 567888888765433332 234455555543
No 47
>PF08982 DUF1857: Domain of unknown function (DUF1857); InterPro: IPR015075 This protein has no known function. It is found in various hypothetical bacterial and fungal proteins. ; PDB: 2FFS_B.
Probab=94.98 E-value=0.74 Score=36.18 Aligned_cols=108 Identities=19% Similarity=0.242 Sum_probs=57.6
Q ss_pred CHHHHHHHhhcCCcccCCcCCCCeeeEEEEecccCCCCcEEEEEeecCCCCCcccchhcccccccccccccccceeeeeE
Q 038195 10 PADKFYNTFSSKAHTVPNMSPGNLHGVEVHEGDWESHGSVKSWTFSAGDFPATRTEEQTQSSHLRGLHYQWSQHFVEKMK 89 (172)
Q Consensus 10 pa~kvw~~~~d~~~~lpk~~P~~v~sve~~eGd~g~~Gsvr~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k 89 (172)
+.+.+|+-+...+..-..++| .|.+|++++-. +..-.|.++| |+. .++
T Consensus 19 Tr~QlW~GL~~kar~p~~Fvp-~i~~c~Vl~e~--~~~~~R~v~f--g~~---------------------------~v~ 66 (149)
T PF08982_consen 19 TREQLWRGLVLKARNPQLFVP-GIDSCEVLSES--DTVLTREVTF--GGA---------------------------TVR 66 (149)
T ss_dssp -HHHHHHHHHHHHH-GGGT-T-T--EEEEEEE---SSEEEEEEEE--TTE---------------------------EEE
T ss_pred CHHHHHHHHHHHHhChhhCcc-ccCeEEEEecC--CCeEEEEEEE--CCc---------------------------EEE
Confidence 356899998876544456888 49999999864 4567899999 322 388
Q ss_pred EEEEecCCCceEEEEEEeCccccceeEEEEEEEEEecCCCcEEEEEEEEEecCC----CCCChhhhhHHHHHHH
Q 038195 90 EKVELDPENKTVAMVVIEGDLMKHFKSYKVIIKVIPKSEGSLVKWIWEYEKLQE----DGPTPSKYVDFVTDLT 159 (172)
Q Consensus 90 Eri~~D~~~~~i~Y~vieGdl~~~~~s~~~t~~v~p~~dGs~v~w~~~ye~~~~----~~~~p~~~~~~~~~~~ 159 (172)
|++.+.+.. .+.|... -+ .+... .++..++| -.-.++.|+...+ .++....+.+....++
T Consensus 67 E~v~~~~~~-~V~f~~~---~G---s~lt~--~I~e~~~g-~L~ltf~ye~~~p~~~~gs~e~~~~~~~~~~ay 130 (149)
T PF08982_consen 67 ERVTLYPPE-RVDFAQH---DG---SSLTN--IISEPEPG-DLFLTFTYEWRLPGVEPGSPEAKAYQEFYKSAY 130 (149)
T ss_dssp EEEEEETTT-EEEESSS---BE---EEEEE--EEEEEETT-EEEEEEEEEEE----S---------BHHHHHHH
T ss_pred EEEEEeCCc-EEEEEcC---CC---CEEEE--EEecCCCC-cEEEEEEEEecccccCCCCHHHHHHHHHHHHHH
Confidence 999965554 5666211 21 23333 33333344 5567777776643 2223334555555555
No 48
>cd08868 START_STARD1_3_like Cholesterol-binding START domain of mammalian STARD1, -3 and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD1 (also known as StAR) and STARD3 (also known as metastatic lymph node 64/MLN64). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. This STARD1-like subfamily has a high affinity for cholesterol. STARD1/StAR can reduce macrophage lipid content and inflammatory status. It plays an essential role in steroidogenic tissues: transferring the steroid precursor, cholesterol, from the outer to the inner mitochondrial membrane, across the aqueous space. Mutations in the gene encoding STARD1/StAR can cause lipid congenital adrenal hyperplasia (CAH), an autosomal recessive disorder characterized by a steroid synth
Probab=94.57 E-value=2 Score=34.62 Aligned_cols=141 Identities=10% Similarity=0.075 Sum_probs=76.8
Q ss_pred eEEEEcCCHHHHHHHhhcCCcccCCcCCCCeeeEEEEecccCCCCcEEEEEeecC-CCCCcccchhcccccccccccccc
Q 038195 3 TEVEIKSPADKFYNTFSSKAHTVPNMSPGNLHGVEVHEGDWESHGSVKSWTFSAG-DFPATRTEEQTQSSHLRGLHYQWS 81 (172)
Q Consensus 3 ~e~~i~apa~kvw~~~~d~~~~lpk~~P~~v~sve~~eGd~g~~Gsvr~~~~~~g-g~~~~~~~~~~~~~~~~~~~~~~~ 81 (172)
.+..+++|++.++..+-+..+..++|.+. +..+++++.-.+. -.|-...+... +.|. -.
T Consensus 52 ~~~~i~~~~~~v~~~l~~d~~~~~~Wd~~-~~~~~~i~~~d~~-~~i~y~~~~~~~~~~v------------------s~ 111 (208)
T cd08868 52 LTGVLDCPAEFLYNELVLNVESLPSWNPT-VLECKIIQVIDDN-TDISYQVAAEAGGGLV------------------SP 111 (208)
T ss_pred EEEEEcCCHHHHHHHHHcCccccceecCc-ccceEEEEEecCC-cEEEEEEecCcCCCcc------------------cc
Confidence 56788999999997554333578999996 8888888753111 12222122111 1111 11
Q ss_pred cceeeeeEEEEE-ecCCCceEEEEEEeCc-cc--cc---eeEEEEEEEEEecCC--C-cEEEEEEEEEecCCCCCCh-h-
Q 038195 82 QHFVEKMKEKVE-LDPENKTVAMVVIEGD-LM--KH---FKSYKVIIKVIPKSE--G-SLVKWIWEYEKLQEDGPTP-S- 149 (172)
Q Consensus 82 ~~~~~~~kEri~-~D~~~~~i~Y~vieGd-l~--~~---~~s~~~t~~v~p~~d--G-s~v~w~~~ye~~~~~~~~p-~- 149 (172)
|+ ++--+.- .++....+...-++-+ .+ +. ...+.+-+.++|.++ + |.+.|.+..++++.- |.- .
T Consensus 112 RD---fV~~r~~~~~~~~~~i~~~sv~h~~~P~~~g~VR~~~~~~~~~i~p~~~~~~~t~v~~~~~~Dp~G~i-P~~lvN 187 (208)
T cd08868 112 RD---FVSLRHWGIRENCYLSSGVSVEHPAMPPTKNYVRGENGPGCWILRPLPNNPNKCNFTWLLNTDLKGWL-PQYLVD 187 (208)
T ss_pred cc---eEEEEEEEecCCeEEEEEEeccCCCCCCCCCeEEEeccccEEEEEECCCCCCceEEEEEEEECCCCCC-cceeee
Confidence 23 2222333 3343344444434422 21 11 345667788888754 4 999999999998752 211 0
Q ss_pred -hhhHHHHHHHHHHHHHHh
Q 038195 150 -KYVDFVTDLTKNIDAHLL 167 (172)
Q Consensus 150 -~~~~~~~~~~k~ie~yll 167 (172)
-.......+++.|..++.
T Consensus 188 ~~~~~~~~~~~~~Lr~~~~ 206 (208)
T cd08868 188 QALASVLLDFMKHLRKRIA 206 (208)
T ss_pred hhhHHHHHHHHHHHHHHHh
Confidence 112344566677777664
No 49
>PF10698 DUF2505: Protein of unknown function (DUF2505); InterPro: IPR019639 This entry represents proteins found Actinobacteria and Proteobacteria. The function is not known.
Probab=93.63 E-value=2.7 Score=32.70 Aligned_cols=125 Identities=18% Similarity=0.124 Sum_probs=66.9
Q ss_pred ceEEEEcCCHHHHHHHhhcCCc---ccCCcCCCCeeeEEEEecccCCCCcEEEEEeecCCCCCcccchhccccccccccc
Q 038195 2 ETEVEIKSPADKFYNTFSSKAH---TVPNMSPGNLHGVEVHEGDWESHGSVKSWTFSAGDFPATRTEEQTQSSHLRGLHY 78 (172)
Q Consensus 2 ~~e~~i~apa~kvw~~~~d~~~---~lpk~~P~~v~sve~~eGd~g~~Gsvr~~~~~~gg~~~~~~~~~~~~~~~~~~~~ 78 (172)
+.++++.+|++++|+++.|... .+ +-+..-...++..+.+++ | ++.. .....+ ...-+..+..-..+.|.+
T Consensus 2 ~~~~~~~~~~~~v~~~~~d~~y~~~r~-~~~g~~~~~~~~~~~~~~--g-~~v~-~~~~v~-~~~lP~~~~k~v~~~l~v 75 (159)
T PF10698_consen 2 EHSVEYPAPVERVWAAFTDEDYWEARC-AALGADNAEVESFEVDGD--G-VRVT-VRQTVP-ADKLPSAARKFVGGDLRV 75 (159)
T ss_pred eEEEEcCCCHHHHHHHHcCHHHHHHHH-HHcCCCCceEEEEEEcCC--e-EEEE-EEEecC-hhhCCHHHHHhcCCCeEE
Confidence 5678899999999999998532 22 223221222232332211 2 2221 111211 101111121111111111
Q ss_pred ccccceeeeeEEEEE-ecCCCceEEEEEEeCccccceeEEEEEEEEEecCCCcEEEEEEEEEecCC
Q 038195 79 QWSQHFVEKMKEKVE-LDPENKTVAMVVIEGDLMKHFKSYKVIIKVIPKSEGSLVKWIWEYEKLQE 143 (172)
Q Consensus 79 ~~~~~~~~~~kEri~-~D~~~~~i~Y~vieGdl~~~~~s~~~t~~v~p~~dGs~v~w~~~ye~~~~ 143 (172)
. -.|... .++..++.+|++--.+. --++++++.+.|.++||.+.+..+.+-.-+
T Consensus 76 ~--------~~e~w~~~~~g~~~g~~~~~~~G~---P~~~~G~~~L~~~~~gt~~~~~g~v~v~VP 130 (159)
T PF10698_consen 76 T--------RTETWTPLDDGRRTGTFTVSIPGA---PVSISGTMRLRPDGGGTRLTVEGEVKVKVP 130 (159)
T ss_pred E--------EEEEEecCCCCeEEEEEEEEecCc---eEEEEEEEEEecCCCCEEEEEEEEEEEEEc
Confidence 1 123333 47788888888654333 257899999999888899999999877654
No 50
>cd08903 START_STARD5-like Lipid-binding START domain of mammalian STARD5 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD5, and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD5 is ubiquitously expressed, with highest levels in liver and kidney. STARD5 functions in the kidney within the proximal tubule cells where it is associated with the Endoplasmic Reticulum (ER), and may participate in ER-associated cholesterol transport. It binds cholesterol and 25-hydroxycholesterol. Expression of the gene encoding STARD5 is increased by ER stress, and its mRNA and protein levels are elevated in a type I diabetic mouse model of human diabetic nephropathy.
Probab=93.54 E-value=3.4 Score=33.59 Aligned_cols=141 Identities=11% Similarity=0.092 Sum_probs=77.0
Q ss_pred eEEEEcCCHHHHHHHhhcCCc-ccCCcCCCCeeeEEEEecccCCCCcEEEEEeecCCCCCcccchhcccccccccccccc
Q 038195 3 TEVEIKSPADKFYNTFSSKAH-TVPNMSPGNLHGVEVHEGDWESHGSVKSWTFSAGDFPATRTEEQTQSSHLRGLHYQWS 81 (172)
Q Consensus 3 ~e~~i~apa~kvw~~~~d~~~-~lpk~~P~~v~sve~~eGd~g~~Gsvr~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~ 81 (172)
.+..+.++++++|+.+.|..+ .-++|.+. +.+++++|--+ +....+.+....+ .+.+...
T Consensus 50 ~e~~i~~s~~~~~~~l~d~~~~~r~~W~~~-~~~~~vle~id---~~~~i~~~~~p~~---------------~~~~vs~ 110 (208)
T cd08903 50 GEGIVYATLEQVWDCLKPAAGGLRVKWDQN-VKDFEVVEAIS---DDVSVCRTVTPSA---------------AMKIISP 110 (208)
T ss_pred EEEEecCCHHHHHHHHHhccchhhhhhhhc-cccEEEEEEec---CCEEEEEEecchh---------------cCCCcCC
Confidence 577889999999999987643 22799995 89999988531 1222233211111 0112233
Q ss_pred cceeeeeEEEEE-ecCCCceEEEEEEeCc-cc--ccee---E--EEEEEEEEecCCC-cEEEEEEEEEecCCCCCChhhh
Q 038195 82 QHFVEKMKEKVE-LDPENKTVAMVVIEGD-LM--KHFK---S--YKVIIKVIPKSEG-SLVKWIWEYEKLQEDGPTPSKY 151 (172)
Q Consensus 82 ~~~~~~~kEri~-~D~~~~~i~Y~vieGd-l~--~~~~---s--~~~t~~v~p~~dG-s~v~w~~~ye~~~~~~~~p~~~ 151 (172)
|+++.. .... .++....+.+..++-+ ++ ..|- . +...++..|.+++ |.++|.+..++++.- |.-+
T Consensus 111 RDfV~~--~~~~~~~d~~i~i~~~sv~h~~~P~~~~~VR~~~~~~g~~~~~~~~~~~~t~v~~~~~~DpkG~i---P~~l 185 (208)
T cd08903 111 RDFVDV--VLVKRYEDGTISSNATNVEHPLCPPQAGFVRGFNHPCGCFCEPVPGEPDKTQLVSFFQTDLSGYL---PQTV 185 (208)
T ss_pred CceEEE--EEEEecCCceEEEeEEeccCCCCCCCCCeEEEeeeccEEEEEECCCCCCceEEEEEEEeccCCCc---CHHH
Confidence 443322 2223 4444445555455543 22 1111 1 2345555554555 999999999998752 3333
Q ss_pred h-----HHHHHHHHHHHHHHh
Q 038195 152 V-----DFVTDLTKNIDAHLL 167 (172)
Q Consensus 152 ~-----~~~~~~~k~ie~yll 167 (172)
. +.....++.|..+|.
T Consensus 186 vn~~~~~~~~~~~~~Lr~~~~ 206 (208)
T cd08903 186 VDSFFPASMAEFYNNLTKAVK 206 (208)
T ss_pred HHHHhhHHHHHHHHHHHHHHh
Confidence 2 334455566666653
No 51
>cd08913 START_STARD14-like Lipid-binding START domain of mammalian STARDT14 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian brown fat-inducible STARD14 (also known as Acyl-Coenzyme A Thioesterase 11 or ACOT11, BFIT, THEA, THEM1, KIAA0707, and MGC25974) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD14/ACOT11 is a type II acetyl-CoA thioesterase; it catalyzes the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Human STARD14 displays acetyl-CoA thioesterase activity towards medium(C12)- and long(C16)-chain fatty acyl-CoA substrates. In addition to having a START domain, most proteins in this subgroup have two tandem copies of the hotdog domain. There are two splice variants of
Probab=93.50 E-value=4.1 Score=34.36 Aligned_cols=114 Identities=11% Similarity=-0.015 Sum_probs=65.6
Q ss_pred eEEEEcCCHHHHHHHhhcCCcccCCcCCCCeeeEEEEecccCCCCcEEEEEeecCCCCCcccchhccccccccccccccc
Q 038195 3 TEVEIKSPADKFYNTFSSKAHTVPNMSPGNLHGVEVHEGDWESHGSVKSWTFSAGDFPATRTEEQTQSSHLRGLHYQWSQ 82 (172)
Q Consensus 3 ~e~~i~apa~kvw~~~~d~~~~lpk~~P~~v~sve~~eGd~g~~Gsvr~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~ 82 (172)
.+..+++|++.+|+++.|.. ..++|.++ +.++++++--+..-. +.+++-.+-..|+. .|
T Consensus 85 ~e~~vd~s~e~v~~lL~D~~-~r~~Wd~~-~~e~~vIe~id~~~~-vY~v~~~p~~~pvs------------------~R 143 (240)
T cd08913 85 VEMVVHVDAAQAFLLLSDLR-RRPEWDKH-YRSCELVQQVDEDDA-IYHVTSPSLSGHGK------------------PQ 143 (240)
T ss_pred EEEEEcCCHHHHHHHHhChh-hhhhhHhh-ccEEEEEEecCCCcE-EEEEecCCCCCCCC------------------CC
Confidence 56788999999999999875 78999995 999999885312222 44443222100110 12
Q ss_pred ceeeeeEEEEE-ecCCCc---eEEEEEEeCc-cc--c---ceeEEEEEEEEEecCCC-cEEEEEEEEEe
Q 038195 83 HFVEKMKEKVE-LDPENK---TVAMVVIEGD-LM--K---HFKSYKVIIKVIPKSEG-SLVKWIWEYEK 140 (172)
Q Consensus 83 ~~~~~~kEri~-~D~~~~---~i~Y~vieGd-l~--~---~~~s~~~t~~v~p~~dG-s~v~w~~~ye~ 140 (172)
+ ++...-. -+.++. .+..+.+.=+ ++ + ....+.+-+.+.|.++| |.+.+...-.|
T Consensus 144 D---fV~~~s~~~~~~~g~~yii~~~sv~~P~~Pp~kgyVR~~~~~ggw~i~p~~~~~t~vtY~~~~dP 209 (240)
T cd08913 144 D---FVILASRRKPCDNGDPYVIALRSVTLPTHPPTPEYTRGETLCSGFCIWEESDQLTKVSYYNQATP 209 (240)
T ss_pred e---EEEEEEEEeccCCCccEEEEEEEeecCCCCCCCCcEEeeecccEEEEEECCCCcEEEEEEEEeCC
Confidence 2 2222222 222222 2333333322 22 1 14577888999998887 88877554443
No 52
>cd08869 START_RhoGAP C-terminal lipid-binding START domain of mammalian STARD8, -12, -13 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD8 (also known as deleted in liver cancer 3/DLC3, and Arhgap38), STARD12 (also known as DLC-1, Arhgap7, and p122-RhoGAP), and STARD13 (also known as DLC-2, Arhgap37, and SDCCAG13). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subfamily also have a RhoGAP domain. Some, including STARD12, -and -13, also have an N-terminal SAM (sterile alpha motif) domain; these have a SAM-RhoGAP-START domain organization. This subfamily is involved in cancer development. A large spectrum of cancers have dysregul
Probab=93.40 E-value=3.5 Score=33.22 Aligned_cols=114 Identities=12% Similarity=0.069 Sum_probs=68.3
Q ss_pred eEEEEcCCHHHHHHHhhcCCcccCCcCCCCeeeEEEEecccCCCCcEEEEEeecCCCCCcccchhccccccccccccccc
Q 038195 3 TEVEIKSPADKFYNTFSSKAHTVPNMSPGNLHGVEVHEGDWESHGSVKSWTFSAGDFPATRTEEQTQSSHLRGLHYQWSQ 82 (172)
Q Consensus 3 ~e~~i~apa~kvw~~~~d~~~~lpk~~P~~v~sve~~eGd~g~~Gsvr~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~ 82 (172)
.+..++++++++++.+.+.. ++|.+. +.++++++--+. .+ ..+.+.-..+ .+. -.
T Consensus 48 ~~~~v~a~~~~v~~~l~d~r---~~Wd~~-~~~~~vie~id~--~~-~i~y~~~~~p-~pv----------------~~- 102 (197)
T cd08869 48 ASTEVEAPPEEVLQRILRER---HLWDDD-LLQWKVVETLDE--DT-EVYQYVTNSM-APH----------------PT- 102 (197)
T ss_pred EEEEeCCCHHHHHHHHHHHH---hccchh-hheEEEEEEecC--Cc-EEEEEEeeCC-CCC----------------CC-
Confidence 57789999999999887653 899996 888888875311 12 2222322222 111 01
Q ss_pred ceeeeeEEEEE-ecCCC--ceEEEEEEeC--ccccc---eeEEEEEEEEEecCCC-cEEEEEEEEEecCC
Q 038195 83 HFVEKMKEKVE-LDPEN--KTVAMVVIEG--DLMKH---FKSYKVIIKVIPKSEG-SLVKWIWEYEKLQE 143 (172)
Q Consensus 83 ~~~~~~kEri~-~D~~~--~~i~Y~vieG--dl~~~---~~s~~~t~~v~p~~dG-s~v~w~~~ye~~~~ 143 (172)
..++-.+.- .+.++ ..+.+.-++- .+... ...+.+-+.++|.++| |.+++.+..++.|.
T Consensus 103 --RDfV~~r~~~~~~~~g~~~i~~~Sv~~~~~~p~g~VR~~~~~~g~~i~p~~~~~t~vty~~~~Dp~G~ 170 (197)
T cd08869 103 --RDYVVLRTWRTDLPKGACVLVETSVEHTEPVPLGGVRAVVLASRYLIEPCGSGKSRVTHICRVDLRGR 170 (197)
T ss_pred --ceEEEEEEEEecCCCCcEEEEEECCcCCCCCCCCCEEEEEEeeeEEEEECCCCCeEEEEEEEECCCCC
Confidence 233444433 33333 3333333431 11111 3566788899998776 99999999999875
No 53
>cd08877 START_2 Uncharacterized subgroup of the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domain family. Functionally uncharacterized subgroup of the START domain family. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some mammalian members of the START family (STARDs), it is known which lipids bind in this pocket; these include cholesterol (STARD1, -3, -4, and -5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2, -7, and -10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). Mammalian STARDs participate in the control of various cellular processes, including lipid trafficking between intracellular compartments, lipid metabolism, and modulation of signaling events. Mutation or altered expression of STARDs is linked to diseases such as cancer, genetic disorders, a
Probab=93.39 E-value=2.6 Score=34.11 Aligned_cols=138 Identities=14% Similarity=0.042 Sum_probs=75.8
Q ss_pred eEEEEcCCHHHHHHHhhcCCcccCCcCCCCeeeEEEEecccCCCCcEEEEEeecCCCCCcccchhccccccccccccccc
Q 038195 3 TEVEIKSPADKFYNTFSSKAHTVPNMSPGNLHGVEVHEGDWESHGSVKSWTFSAGDFPATRTEEQTQSSHLRGLHYQWSQ 82 (172)
Q Consensus 3 ~e~~i~apa~kvw~~~~d~~~~lpk~~P~~v~sve~~eGd~g~~Gsvr~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~ 82 (172)
.+..|++|++.+.+++.|. .+.|+|+|. ..+.+.++..+ ..-.|-.+.+ ..+ .+.+ .|
T Consensus 50 ~e~~i~~~~~~~~~vl~d~-~~~~~W~p~-~~~~~~l~~~~-~~~~v~y~~~--~~P-wPv~----------------~R 107 (215)
T cd08877 50 MEGEIDGPLFNLLALLNEV-ELYKTWVPF-CIRSKKVKQLG-RADKVCYLRV--DLP-WPLS----------------NR 107 (215)
T ss_pred EEEEecCChhHeEEEEehh-hhHhhhccc-ceeeEEEeecC-CceEEEEEEE--eCc-eEec----------------ce
Confidence 5678899999999999998 589999996 55556665431 1112222222 222 2110 11
Q ss_pred ceeeeeEEEEE-ecCCCceEEE--EEEeC----------cccc------ceeEEEEEEEEEecCCC-cEEEEEEEEEecC
Q 038195 83 HFVEKMKEKVE-LDPENKTVAM--VVIEG----------DLMK------HFKSYKVIIKVIPKSEG-SLVKWIWEYEKLQ 142 (172)
Q Consensus 83 ~~~~~~kEri~-~D~~~~~i~Y--~vieG----------dl~~------~~~s~~~t~~v~p~~dG-s~v~w~~~ye~~~ 142 (172)
+..-+ ...++ ++ ++..+.. .-+.. +++. ....+.+-+.++|-++| |.+++.+...|++
T Consensus 108 D~v~~-~~~~~~~~-~~~~i~i~~~si~~~~~~~~~~~~~iP~~~~~~vR~~~~~~~~~i~p~~~~~t~v~~~~~~DP~g 185 (215)
T cd08877 108 EAVFR-GFGVDRLE-ENGQIVILLKSIDDDPEFLKLTDLDIPSTSAKGVRRIIKYYGFVITPISPTKCYLRFVANVDPKM 185 (215)
T ss_pred EEEEE-EEEEeeec-cCCCEEEEEecCCCCcccccccCCcCCCCCCCceEEEEecceEEEEEcCCCCeEEEEEEEcCCCc
Confidence 11111 12223 32 2333322 22211 0221 13677788899998887 9999988888777
Q ss_pred CCCCChhhh-----hHHHHHHHHHHHHHH
Q 038195 143 EDGPTPSKY-----VDFVTDLTKNIDAHL 166 (172)
Q Consensus 143 ~~~~~p~~~-----~~~~~~~~k~ie~yl 166 (172)
...| .-+ +.....++++|.+.+
T Consensus 186 ~~IP--~~liN~~~k~~~~~~~~~l~k~~ 212 (215)
T cd08877 186 SLVP--KSLLNFVARKFAGLLFEKIQKAA 212 (215)
T ss_pred ccCC--HHHHHHHHHHHHHHHHHHHHHHH
Confidence 5333 332 335555666665543
No 54
>cd00177 START Lipid-binding START domain of mammalian STARD1-STARD15 and related proteins. This family includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, and related domains, such as the START domain of the Arabidopsis homeobox protein GLABRA 2. The mammalian STARDs are grouped into 8 subfamilies. This family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some members of this family, specific lipids that bind in this pocket are known; these include cholesterol (STARD1/STARD3/ STARD4/STARD5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2/ STARD7/STARD10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). The START domain is found either alone or in association with other domains. Mammalian STARDs participate in the control of various cellular pro
Probab=92.78 E-value=3.5 Score=31.51 Aligned_cols=116 Identities=9% Similarity=0.005 Sum_probs=68.8
Q ss_pred eEEEEcCCHHHHHHHhhcCCcccCCcCCCCeeeEEEEecccCCCCcEEEEEeecCCCCCcccchhccccccccccccccc
Q 038195 3 TEVEIKSPADKFYNTFSSKAHTVPNMSPGNLHGVEVHEGDWESHGSVKSWTFSAGDFPATRTEEQTQSSHLRGLHYQWSQ 82 (172)
Q Consensus 3 ~e~~i~apa~kvw~~~~d~~~~lpk~~P~~v~sve~~eGd~g~~Gsvr~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~ 82 (172)
.+.++++|++.+++++.+. ...++|-|. +.++++++-.. ..-.|....+....+ . ..|
T Consensus 43 ~~~~i~~~~~~v~~~l~d~-~~~~~w~~~-~~~~~vl~~~~-~~~~i~~~~~~~p~p-~------------------~~R 100 (193)
T cd00177 43 AEGVIPASPEQVFELLMDI-DLRKKWDKN-FEEFEVIEEID-EHTDIIYYKTKPPWP-V------------------SPR 100 (193)
T ss_pred EEEEECCCHHHHHHHHhCC-chhhchhhc-ceEEEEEEEeC-CCeEEEEEEeeCCCc-c------------------CCc
Confidence 5678899999999999986 467899985 99999998652 223444544443321 0 111
Q ss_pred ceeeeeEEEEE-ecC-CCceEEEEEEeCc-ccc--c---eeEEEEEEEEEecCCC-cEEEEEEEEEecCC
Q 038195 83 HFVEKMKEKVE-LDP-ENKTVAMVVIEGD-LMK--H---FKSYKVIIKVIPKSEG-SLVKWIWEYEKLQE 143 (172)
Q Consensus 83 ~~~~~~kEri~-~D~-~~~~i~Y~vieGd-l~~--~---~~s~~~t~~v~p~~dG-s~v~w~~~ye~~~~ 143 (172)
+ ++--+.. .++ ....+...=++.+ ... . ...+.+-+.++|.++| |.+++.+..++.+.
T Consensus 101 d---fv~~~~~~~~~~~~~~~~~~Si~~~~~p~~~~~vR~~~~~~~~~i~~~~~~~~~vt~~~~~D~~g~ 167 (193)
T cd00177 101 D---FVYLRRRRKLDDGTYVIVSKSVDHDSHPKEKGYVRAEIKLSGWIIEPLDPGKTKVTYVLQVDPKGS 167 (193)
T ss_pred c---EEEEEEEEEcCCCeEEEEEeecCCCCCCCCCCcEEEEEEccEEEEEECCCCCEEEEEEEeeCCCCC
Confidence 2 2222222 333 2222333223322 111 1 2233456788888776 99999999998874
No 55
>cd08914 START_STARD15-like Lipid-binding START domain of mammalian STARD15 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD15/ACOT12 (also known as cytoplasmic acetyl-CoA hydrolase/CACH, THEAL, and MGC105114) and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD15/ACOT12 is a type II acetyl-CoA thioesterase; it catalyzes the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Rat CACH hydrolyzes acetyl-CoA to acetate and CoA. In addition to having a START domain, most proteins in this subgroup have two tandem copies of the hotdog domain. Human STARD15/ACOT12 may have roles in cholesterol metabolism and in beta-oxidation.
Probab=92.77 E-value=5.4 Score=33.72 Aligned_cols=48 Identities=25% Similarity=0.241 Sum_probs=36.8
Q ss_pred eEEEEcCCHHHHHHHhhcCCcccCCcCCCCeeeEEEEecccCCCCcEEEEE
Q 038195 3 TEVEIKSPADKFYNTFSSKAHTVPNMSPGNLHGVEVHEGDWESHGSVKSWT 53 (172)
Q Consensus 3 ~e~~i~apa~kvw~~~~d~~~~lpk~~P~~v~sve~~eGd~g~~Gsvr~~~ 53 (172)
.+..+++|++++++++.|.. ..|+|.++ +.++++++--+...- |..++
T Consensus 82 ~e~~vdvs~~~l~~LL~D~~-~r~~Wd~~-~~e~~vI~qld~~~~-vY~~~ 129 (236)
T cd08914 82 VEKHVKRPAHLAYRLLSDFT-KRPLWDPH-FLSCEVIDWVSEDDQ-IYHIT 129 (236)
T ss_pred EEEEEcCCHHHHHHHHhChh-hhchhHHh-hceEEEEEEeCCCcC-EEEEe
Confidence 57788999999999999985 78999996 888999885312222 55543
No 56
>cd08905 START_STARD1-like Cholesterol-binding START domain of mammalian STARD1 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD1 (also known as StAR) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD1 has a high affinity for cholesterol. It can reduce macrophage lipid content and inflammatory status. It plays an essential role in steroidogenic tissues: transferring the steroid precursor, cholesterol, from the outer to the inner mitochondrial membrane, across the aqueous space. Mutations in the gene encoding STARD1/StAR can cause lipid congenital adrenal hyperplasia (CAH), an autosomal recessive disorder characterized by a steroid synthesis deficiency and an accumulation of cholesterol in
Probab=92.75 E-value=4.6 Score=32.86 Aligned_cols=140 Identities=11% Similarity=0.139 Sum_probs=76.6
Q ss_pred eEEEEcCCHHHHHHHhhcCCcccCCcCCCCeeeEEEEecccCCCCcEEEEEeecCCCCCcccchhccccccccccccccc
Q 038195 3 TEVEIKSPADKFYNTFSSKAHTVPNMSPGNLHGVEVHEGDWESHGSVKSWTFSAGDFPATRTEEQTQSSHLRGLHYQWSQ 82 (172)
Q Consensus 3 ~e~~i~apa~kvw~~~~d~~~~lpk~~P~~v~sve~~eGd~g~~Gsvr~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~ 82 (172)
.+..+++|++++++.+-+.....++|.+. +.++++++--+ ..+ ..+.+.....|. .+.-.|
T Consensus 53 ~e~~i~~~~~~l~~~l~~d~e~~~~W~~~-~~~~~vl~~id--~~~-~i~y~~~~p~p~---------------~~vs~R 113 (209)
T cd08905 53 LEVVVDQPLDNLYSELVDRMEQMGEWNPN-VKEVKILQRIG--KDT-LITHEVAAETAG---------------NVVGPR 113 (209)
T ss_pred EEEEecCCHHHHHHHHHhchhhhceeccc-chHHHHHhhcC--CCc-eEEEEEeccCCC---------------CccCcc
Confidence 57789999999995554333478999995 88988887431 122 112221111110 001122
Q ss_pred ceeeeeEEEEE-ecCCCceEEEEEEeCc-cc--c---ceeEEEEEEEEEecCC--C-cEEEEEEEEEecCCCCCChhhhh
Q 038195 83 HFVEKMKEKVE-LDPENKTVAMVVIEGD-LM--K---HFKSYKVIIKVIPKSE--G-SLVKWIWEYEKLQEDGPTPSKYV 152 (172)
Q Consensus 83 ~~~~~~kEri~-~D~~~~~i~Y~vieGd-l~--~---~~~s~~~t~~v~p~~d--G-s~v~w~~~ye~~~~~~~~p~~~~ 152 (172)
+ ++..+.- -+..+..+.....+-+ ++ + ......+-+.+.|.++ | |.++|.+..++++.. |.-+.
T Consensus 114 D---~V~~~~~~~~~~~~~~~~~s~~~~~~P~~~~~VR~~~~~~~w~l~p~~~~~~~t~v~~~~~~DpkG~i---P~~lv 187 (209)
T cd08905 114 D---FVSVRCAKRRGSTCVLAGMATHFGLMPEQKGFIRAENGPTCIVLRPLAGDPSKTKLTWLLSIDLKGWL---PKSII 187 (209)
T ss_pred c---eEEEEEEEEcCCcEEEEEEeecCCCCCCCCCeEEEEeeccEEEEEECCCCCCceEEEEEEeecCCCCC---CHHHH
Confidence 3 2333333 3344433222222333 21 1 1456667888999865 6 999999999999862 33222
Q ss_pred -----HHHHHHHHHHHHHHh
Q 038195 153 -----DFVTDLTKNIDAHLL 167 (172)
Q Consensus 153 -----~~~~~~~k~ie~yll 167 (172)
+.....++.|.++|.
T Consensus 188 N~~~~~~~~~~~~~Lr~~~~ 207 (209)
T cd08905 188 NQVLSQTQVDFANHLRQRMA 207 (209)
T ss_pred HHHhHHhHHHHHHHHHHHHh
Confidence 344455566666554
No 57
>cd08906 START_STARD3-like Cholesterol-binding START domain of mammalian STARD3 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD3 (also known as metastatic lymph node 64/MLN64) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD3 has a high affinity for cholesterol. It may function in trafficking endosomal cholesterol to a cytosolic acceptor or membrane. In addition to having a cytoplasmic START cholesterol-binding domain, STARD3 also contains an N-terminal MENTAL cholesterol-binding and protein-protein interaction domain. The MENTAL domain contains transmembrane helices and anchors MLN64 to endosome membranes. The gene encoding STARD3 is overexpressed in about 25% of breast cancers.
Probab=90.67 E-value=8.1 Score=31.52 Aligned_cols=38 Identities=11% Similarity=0.145 Sum_probs=31.5
Q ss_pred eEEEEcCCHHHHH-HHhhcCCcccCCcCCCCeeeEEEEecc
Q 038195 3 TEVEIKSPADKFY-NTFSSKAHTVPNMSPGNLHGVEVHEGD 42 (172)
Q Consensus 3 ~e~~i~apa~kvw-~~~~d~~~~lpk~~P~~v~sve~~eGd 42 (172)
.+..+++|++.+| +++.|.. ..++|.+. +.++++++--
T Consensus 53 ~~~~v~~~~~~l~~~ll~D~~-~~~~W~~~-~~~~~vi~~~ 91 (209)
T cd08906 53 LKAFMQCPAELVYQEVILQPE-KMVLWNKT-VSACQVLQRV 91 (209)
T ss_pred EEEEEcCCHHHHHHHHHhChh-hccccCcc-chhhhheeec
Confidence 5778899999998 5778774 78999995 9999998753
No 58
>cd08870 START_STARD2_7-like Lipid-binding START domain of mammalian STARD2, -7, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD2 (also known as phosphatidylcholine transfer protein/PC-TP), and STARD7 (also known as gestational trophoblastic tumor 1/GTT1). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD2 is a cytosolic phosphatidycholine (PtdCho) transfer protein, which traffics PtdCho, the most common class of phospholipids in eukaryotes, between membranes. It represents a minimal START domain structure. STARD2 plays roles in hepatic cholesterol metabolism, in the development of atherosclerosis, and may also have a mitochondrial function. The gene encoding STARD7 is overexpressed in choriocarcinoma. STARD7 appears to be invo
Probab=85.54 E-value=18 Score=29.24 Aligned_cols=138 Identities=7% Similarity=-0.019 Sum_probs=78.5
Q ss_pred eEEEE-cCCHHHHHHHhhcCCcccCCcCCCCeeeEEEEecccCCCCcEEEEEeecCCCCCcccchhcccccccccccccc
Q 038195 3 TEVEI-KSPADKFYNTFSSKAHTVPNMSPGNLHGVEVHEGDWESHGSVKSWTFSAGDFPATRTEEQTQSSHLRGLHYQWS 81 (172)
Q Consensus 3 ~e~~i-~apa~kvw~~~~d~~~~lpk~~P~~v~sve~~eGd~g~~Gsvr~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~ 81 (172)
++.++ ++|++.+++++.|.. ..++|.+. +.+.++++-+. ..|+ ..+.+.-..+ .+.+ .
T Consensus 54 ~~~~~~~~s~~~~~~~l~D~~-~r~~Wd~~-~~~~~~le~~~-~~~~-~i~y~~~~~P-~P~s----------------~ 112 (209)
T cd08870 54 VRGVFEDCTPELLRDFYWDDE-YRKKWDET-VIEHETLEEDE-KSGT-EIVRWVKKFP-FPLS----------------D 112 (209)
T ss_pred EEEEEcCCCHHHHHHHHcChh-hHhhhhhh-eeeEEEEEecC-CCCc-EEEEEEEECC-CcCC----------------C
Confidence 45567 679999999999974 78999995 77888887652 2132 2222222222 2211 1
Q ss_pred cceeeeeEEEEE-ec-CCCceEEEEEEeCc-ccc----ceeEEEEEEEEEec--CCC-cEEEEEEEEEecCCCCCChhhh
Q 038195 82 QHFVEKMKEKVE-LD-PENKTVAMVVIEGD-LMK----HFKSYKVIIKVIPK--SEG-SLVKWIWEYEKLQEDGPTPSKY 151 (172)
Q Consensus 82 ~~~~~~~kEri~-~D-~~~~~i~Y~vieGd-l~~----~~~s~~~t~~v~p~--~dG-s~v~w~~~ye~~~~~~~~p~~~ 151 (172)
..++-.+.. .| +....+....+.-. .+. .+..|.+.+.+.|. ++| |.+.++..-.+.+. . |.-+
T Consensus 113 ---RD~V~~r~~~~~~~~~~~i~~~sv~~~~~P~~~~vRv~~~~~~~~i~p~~~~~~~t~~~~~~~~dp~G~--I-P~wl 186 (209)
T cd08870 113 ---REYVIARRLWESDDRSYVCVTKGVPYPSVPRSGRKRVDDYESSLVIRAVKGDGQGSACEVTYFHNPDGG--I-PREL 186 (209)
T ss_pred ---ceEEEEEEEEEcCCCEEEEEEeCCcCCCCCCCCcEEEEEEEeEEEEEEecCCCCceEEEEEEEECCCCC--C-CHHH
Confidence 234444443 44 44444444444432 222 26788889999997 555 87777777766443 2 3332
Q ss_pred h-----HHHHHHHHHHHHHHh
Q 038195 152 V-----DFVTDLTKNIDAHLL 167 (172)
Q Consensus 152 ~-----~~~~~~~k~ie~yll 167 (172)
. ..+-.+++.|...+.
T Consensus 187 vN~~~~~~~~~~l~~l~~a~~ 207 (209)
T cd08870 187 AKLAVKRGMPGFLKKLENALR 207 (209)
T ss_pred HHHHHHhhhHHHHHHHHHHHh
Confidence 2 244455666665553
No 59
>cd08911 START_STARD7-like Lipid-binding START domain of mammalian STARD7 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD7 (also known as gestational trophoblastic tumor 1/GTT1). It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. The gene encoding STARD7 is overexpressed in choriocarcinoma. STARD7 appears to be involved in the intracellular trafficking of phosphatidycholine (PtdCho) to mitochondria. STARD7 was shown to be surface active and to interact differentially with phospholipid monolayers, it showed a preference for phosphatidylserine, cholesterol, and phosphatidylglycerol.
Probab=85.05 E-value=19 Score=29.16 Aligned_cols=138 Identities=14% Similarity=0.075 Sum_probs=75.8
Q ss_pred eEEEE-cCCHHHHHHHhhcCCcccCCcCCCCeeeEEEEecccCCCCcEEEEEeecCCCCCcccchhcccccccccccccc
Q 038195 3 TEVEI-KSPADKFYNTFSSKAHTVPNMSPGNLHGVEVHEGDWESHGSVKSWTFSAGDFPATRTEEQTQSSHLRGLHYQWS 81 (172)
Q Consensus 3 ~e~~i-~apa~kvw~~~~d~~~~lpk~~P~~v~sve~~eGd~g~~Gsvr~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~ 81 (172)
++..+ .+|++.|++++.|.. ..++|.+. +.++++++-+ ...++ ..+.+....+ .+.+ .
T Consensus 49 ~~~~~~d~s~~~~~~~~~D~~-~r~~Wd~~-~~~~~~le~~-~~~~~-~i~y~~~~~P-~P~s----------------~ 107 (207)
T cd08911 49 VYGSFDDVTARDFLNVQLDLE-YRKKWDAT-AVELEVVDED-PETGS-EIIYWEMQWP-KPFA----------------N 107 (207)
T ss_pred EEEEEcCCCHHHHHHHHhCHH-HHHHHHhh-heeEEEEEcc-CCCCC-EEEEEEEECC-CCCC----------------C
Confidence 34445 899999999999984 78999995 8888999864 22233 2222222222 1110 0
Q ss_pred cceeeeeEEEEE-ecCCCce--EEEEEEeC-ccc--c---ceeEEEEEEEEEecC----CCcEEEEEEEEEecCCCCCCh
Q 038195 82 QHFVEKMKEKVE-LDPENKT--VAMVVIEG-DLM--K---HFKSYKVIIKVIPKS----EGSLVKWIWEYEKLQEDGPTP 148 (172)
Q Consensus 82 ~~~~~~~kEri~-~D~~~~~--i~Y~vieG-dl~--~---~~~s~~~t~~v~p~~----dGs~v~w~~~ye~~~~~~~~p 148 (172)
..++-.+-. .|+++.. +...-++- ... + ...+|.+.+.+.|.. +||.+.++..-++.+ .. |
T Consensus 108 ---RD~V~~r~~~~~~~~~~~~i~~~sv~hp~~P~~~g~VRv~~~~~~~~i~p~~~~~~~~~~~~~~~~~dPgG--~I-P 181 (207)
T cd08911 108 ---RDYVYVRRYIIDEENKLIVIVSKAVQHPSYPESPKKVRVEDYWSYMVIRPHKSFDEPGFEFVLTYFDNPGV--NI-P 181 (207)
T ss_pred ---ccEEEEEEEEEcCCCCEEEEEEecCCCCCCCCCCCCEEEEEeEEEEEEEeCCCCCCCCeEEEEEEEeCCCC--cc-C
Confidence 234445554 6766543 22222332 111 1 267888999999873 357766544433332 22 3
Q ss_pred hhhh-----HHHHHHHHHHHHHHh
Q 038195 149 SKYV-----DFVTDLTKNIDAHLL 167 (172)
Q Consensus 149 ~~~~-----~~~~~~~k~ie~yll 167 (172)
.-+. ....++++.|...++
T Consensus 182 ~~lvN~~~~~~~~~~l~~l~~a~~ 205 (207)
T cd08911 182 SYITSWVAMSGMPDFLERLRNAAL 205 (207)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHh
Confidence 3222 244555566655543
No 60
>cd08908 START_STARD12-like C-terminal lipid-binding START domain of mammalian STARD12 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD12 (also known as DLC-1, Arhgap7, and p122-RhoGAP) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subgroup also have an N-terminal SAM (sterile alpha motif) domain and a RhoGAP domain, and have a SAM-RhoGAP-START domain organization. The precise function of the START domain in this subgroup is unclear.
Probab=84.11 E-value=22 Score=29.22 Aligned_cols=114 Identities=10% Similarity=0.067 Sum_probs=69.9
Q ss_pred eEEEEcCCHHHHHHHhhcCCcccCCcCCCCeeeEEEEecccCCCCcEEEEEeecCCCCCcccchhccccccccccccccc
Q 038195 3 TEVEIKSPADKFYNTFSSKAHTVPNMSPGNLHGVEVHEGDWESHGSVKSWTFSAGDFPATRTEEQTQSSHLRGLHYQWSQ 82 (172)
Q Consensus 3 ~e~~i~apa~kvw~~~~d~~~~lpk~~P~~v~sve~~eGd~g~~Gsvr~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~ 82 (172)
.+++++++++.+.+.+-|. .++|.+. +.+.++++--. ..-..+.+.-..+ .+.+
T Consensus 56 ~~~~i~a~~~~vl~~lld~---~~~Wd~~-~~e~~vIe~ld---~~~~I~Yy~~~~P-wP~~------------------ 109 (204)
T cd08908 56 TTIEVPAAPEEILKRLLKE---QHLWDVD-LLDSKVIEILD---SQTEIYQYVQNSM-APHP------------------ 109 (204)
T ss_pred EEEEeCCCHHHHHHHHHhh---HHHHHHH-hhheEeeEecC---CCceEEEEEccCC-CCCC------------------
Confidence 5789999999999999876 4899986 66777777431 1123333332222 2211
Q ss_pred ceeeeeEEEEE-ecCCCceEEEEEEeC--c-ccc---ceeEEEEEEEEEecCCC-cEEEEEEEEEecCC
Q 038195 83 HFVEKMKEKVE-LDPENKTVAMVVIEG--D-LMK---HFKSYKVIIKVIPKSEG-SLVKWIWEYEKLQE 143 (172)
Q Consensus 83 ~~~~~~kEri~-~D~~~~~i~Y~vieG--d-l~~---~~~s~~~t~~v~p~~dG-s~v~w~~~ye~~~~ 143 (172)
...++..|.- .|..+..+....... + ++. ....+.+-+.++|.++| |.++..+..++.+.
T Consensus 110 -~RD~V~~Rs~~~~~~~g~~~I~~~Sv~h~~~P~~~VR~~~~~~~w~i~P~g~g~t~vtyi~~~DPgG~ 177 (204)
T cd08908 110 -ARDYVVLRTWRTNLPKGACALLATSVDHDRAPVAGVRVNVLLSRYLIEPCGSGKSKLTYMCRIDLRGH 177 (204)
T ss_pred -CcEEEEEEEEEEeCCCCeEEEEEeecCcccCCcCceEEEEEeeEEEEEECCCCcEEEEEEEEeCCCCC
Confidence 1334555444 444444443333211 1 221 24567888999999877 99999998888875
No 61
>smart00234 START in StAR and phosphatidylcholine transfer protein. putative lipid-binding domain in StAR and phosphatidylcholine transfer protein
Probab=79.86 E-value=27 Score=27.37 Aligned_cols=140 Identities=11% Similarity=-0.015 Sum_probs=77.4
Q ss_pred eEEEEcCCHHH-HHHHhhcCCcccCCcCCCCeeeEEEEecccCCCCcEEEEEeecCCCCCcccchhcccccccccccccc
Q 038195 3 TEVEIKSPADK-FYNTFSSKAHTVPNMSPGNLHGVEVHEGDWESHGSVKSWTFSAGDFPATRTEEQTQSSHLRGLHYQWS 81 (172)
Q Consensus 3 ~e~~i~apa~k-vw~~~~d~~~~lpk~~P~~v~sve~~eGd~g~~Gsvr~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~ 81 (172)
.+..+.+++++ +-.++.|. ...++|.+. +.++++++--. .-..|.++.+..-..|.. .
T Consensus 49 ~~~~v~~~~~~~~~~~~~d~-~~r~~Wd~~-~~~~~~ie~~~-~~~~i~~~~~~~~~~p~~------------------~ 107 (206)
T smart00234 49 AVGVVPMVCADLVEELMDDL-RYRPEWDKN-VAKAETLEVID-NGTVIYHYVSKFVAGPVS------------------P 107 (206)
T ss_pred EEEEEecChHHHHHHHHhcc-cchhhCchh-cccEEEEEEEC-CCCeEEEEEEecccCcCC------------------C
Confidence 45678888887 55566665 478999996 88888887431 113555544432210110 1
Q ss_pred cceeeeeEEEEE-e-cCCCceEEEEEEeCc-cc--c---ceeEEEEEEEEEecCCC-cEEEEEEEEEecCCCCCCh---h
Q 038195 82 QHFVEKMKEKVE-L-DPENKTVAMVVIEGD-LM--K---HFKSYKVIIKVIPKSEG-SLVKWIWEYEKLQEDGPTP---S 149 (172)
Q Consensus 82 ~~~~~~~kEri~-~-D~~~~~i~Y~vieGd-l~--~---~~~s~~~t~~v~p~~dG-s~v~w~~~ye~~~~~~~~p---~ 149 (172)
| .++--+-- . .+....+..+-++.+ .. . ....+.+-+.+.|.++| |.++|....++.+. .|.. .
T Consensus 108 R---Dfv~~r~~~~~~~~~~vi~~~Sv~~~~~p~~~~~VR~~~~~~~~~i~p~~~~~t~vt~~~~~D~~G~-iP~~lvn~ 183 (206)
T smart00234 108 R---DFVFVRYWRELVDGSYAVVDVSVTHPTSPPTSGYVRAENLPSGLLIEPLGNGPSKVTWVSHADLKGW-LPHWLVRS 183 (206)
T ss_pred C---eEEEEEEEEEcCCCcEEEEEEECCCCCCCCCCCceEEEEeceEEEEEECCCCCeEEEEEEEEecCCC-ccceeehh
Confidence 1 22222222 2 333344444333333 11 1 13467788899999888 99999999998885 2211 1
Q ss_pred hhhHHHHHHHHHHHHHHh
Q 038195 150 KYVDFVTDLTKNIDAHLL 167 (172)
Q Consensus 150 ~~~~~~~~~~k~ie~yll 167 (172)
-.......+++.+-++|.
T Consensus 184 ~~~~~~~~~~~~~~~~~~ 201 (206)
T smart00234 184 LIKSGLAEFAKTWVATLQ 201 (206)
T ss_pred hhhhhHHHHHHHHHHHHH
Confidence 122344455555555554
No 62
>PF11485 DUF3211: Protein of unknown function (DUF3211); InterPro: IPR021578 This archaeal family of proteins has no known function. ; PDB: 2EJX_A.
Probab=77.42 E-value=27 Score=27.17 Aligned_cols=38 Identities=16% Similarity=0.328 Sum_probs=27.6
Q ss_pred eEEEEcCCHHHHHHHhhcCCcccCCcCCCCeeeEEEEecc
Q 038195 3 TEVEIKSPADKFYNTFSSKAHTVPNMSPGNLHGVEVHEGD 42 (172)
Q Consensus 3 ~e~~i~apa~kvw~~~~d~~~~lpk~~P~~v~sve~~eGd 42 (172)
.++..+-+.+.+-.+++|....||+++|. +++++ ++|+
T Consensus 5 ~~i~t~H~~e~v~~ILSDP~F~lp~l~p~-ik~v~-~~~~ 42 (136)
T PF11485_consen 5 IEIKTSHDIEVVLTILSDPEFVLPRLFPP-IKSVK-VEEN 42 (136)
T ss_dssp EEEE-SS-HHHHHHHHT-HHHHHHHHSTT-EEEEE--STT
T ss_pred EEeccCCChHheEEEecCCccEecccCCc-eEEEE-ecCC
Confidence 34445777999999999986799999995 99998 5554
No 63
>cd08872 START_STARD11-like Ceramide-binding START domain of mammalian STARD11 and related domains. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD11 and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD11 can mediate transfer of the natural ceramide isomers, dihydroceramide and phytoceramide, as well as ceramides having C14, C16, C18, and C20 chains. They can also transfer diacylglycerol, but with a lower efficiency. STARD11 is synthesized from two major transcripts: a larger one encoding Goodpasture antigen-binding protein (GPBP)/ceramide transporter long form (CERTL); and a smaller one encoding GPBPdelta26/CERT, which is deleted for 26 amino acids. Both splicing variants mediate ceramide transfer from the ER to the Golg
Probab=77.18 E-value=41 Score=27.99 Aligned_cols=38 Identities=13% Similarity=0.089 Sum_probs=31.0
Q ss_pred eEEEEc-CCHHHHHHHhhcCCcccCCcCCCCeeeEEEEecc
Q 038195 3 TEVEIK-SPADKFYNTFSSKAHTVPNMSPGNLHGVEVHEGD 42 (172)
Q Consensus 3 ~e~~i~-apa~kvw~~~~d~~~~lpk~~P~~v~sve~~eGd 42 (172)
++..+. ++++.+.+.+.|.. ..++|... +.+.++++-.
T Consensus 56 a~~~v~~vt~~~~~~~l~D~~-~r~~Wd~~-~~~~~vie~l 94 (235)
T cd08872 56 ATHAVKGVTGHEVCHYFFDPD-VRMDWETT-LENFHVVETL 94 (235)
T ss_pred EEEEECCCCHHHHHHHHhChh-hHHHHHhh-hheeEEEEec
Confidence 456666 99999999999974 78899985 8898988753
No 64
>KOG3177 consensus Oligoketide cyclase/lipid transport protein [Lipid transport and metabolism]
Probab=76.83 E-value=16 Score=30.72 Aligned_cols=105 Identities=17% Similarity=0.151 Sum_probs=66.8
Q ss_pred EEcCCHHHHHHHhhcCCcccCCcCCCCeeeEEEEecccCCCCcEEEEEeecCCCCCcccchhccccccccccccccccee
Q 038195 6 EIKSPADKFYNTFSSKAHTVPNMSPGNLHGVEVHEGDWESHGSVKSWTFSAGDFPATRTEEQTQSSHLRGLHYQWSQHFV 85 (172)
Q Consensus 6 ~i~apa~kvw~~~~d~~~~lpk~~P~~v~sve~~eGd~g~~Gsvr~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (172)
-+..+++.+|+++++-. ...+++|- .++-++.+-+. +-+.+-.++ .|-+| . .
T Consensus 75 ligysp~~my~vVS~V~-~Y~~FVPw-C~kS~V~~~~P-~~~~kA~Le--VGFk~-------------------l----~ 126 (227)
T KOG3177|consen 75 LIGYSPSEMYSVVSNVS-EYHEFVPW-CKKSDVTSRRP-SGPLKADLE--VGFKP-------------------L----D 126 (227)
T ss_pred hhCCCHHHHHHHHHhHH-Hhhccccc-eeccceeecCC-CCCceeeEE--ecCcc-------------------c----c
Confidence 46789999999999974 78899995 55556665441 113343343 23331 0 1
Q ss_pred eeeEEEEEecCCCceEEEEEEeCccccceeEEEEEEEEEecC--CC-cEEEEEEEEEecC
Q 038195 86 EKMKEKVELDPENKTVAMVVIEGDLMKHFKSYKVIIKVIPKS--EG-SLVKWIWEYEKLQ 142 (172)
Q Consensus 86 ~~~kEri~~D~~~~~i~Y~vieGdl~~~~~s~~~t~~v~p~~--dG-s~v~w~~~ye~~~ 142 (172)
+...-+++.++..++.+ ..-+|.| +......|+|.|+. .| |.+...+.||...
T Consensus 127 E~y~S~Vt~~~p~l~kt-~~~d~rL---F~~L~t~Wsf~pg~~~p~tc~ldf~v~FeF~S 182 (227)
T KOG3177|consen 127 ERYTSNVTCVKPHLTKT-VCADGRL---FNHLITIWSFKPGPNIPRTCTLDFSVSFEFKS 182 (227)
T ss_pred hhheeeeEEecccceEE-eeccccH---HHhhhheeeeccCCCCCCeEEEEEEEEEEehh
Confidence 22344555445545433 3345555 45566789999998 46 9999999999775
No 65
>cd08871 START_STARD10-like Lipid-binding START domain of mammalian STARD10 and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD10 (also known as CGI-52, PTCP-like, and SDCCAG28). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD10 binds phophatidylcholine and phosphatidylethanolamine. This protein is widely expressed and is synthesized constitutively in many organs. It may function in the liver in the export of phospholipids into bile. It is concentrated in the sperm flagellum, and may play a role in energy metabolism. In the mammary gland it may participate in the enrichment of lipids in milk, and be a potential marker of differentiation. Its expression is induced in this gland during gestation and lactation. It is overe
Probab=73.32 E-value=47 Score=26.82 Aligned_cols=116 Identities=5% Similarity=-0.040 Sum_probs=64.8
Q ss_pred eEEEE-cCCHHHHHHHhhcCCcccCCcCCCCeeeEEEEecccCCCCcEEEEEeecCCCCCcccchhcccccccccccccc
Q 038195 3 TEVEI-KSPADKFYNTFSSKAHTVPNMSPGNLHGVEVHEGDWESHGSVKSWTFSAGDFPATRTEEQTQSSHLRGLHYQWS 81 (172)
Q Consensus 3 ~e~~i-~apa~kvw~~~~d~~~~lpk~~P~~v~sve~~eGd~g~~Gsvr~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~ 81 (172)
++..+ .+|++.+++++.|. ...++|.|. +..+++++-- +..-.|.++.+....+ .+ .
T Consensus 51 ~~~~~~~~s~e~~~~~l~D~-~~r~~Wd~~-~~e~~~ie~~-d~~~~i~y~~~~~P~p---vs----------------~ 108 (222)
T cd08871 51 VSAIFPDVPAETLYDVLHDP-EYRKTWDSN-MIESFDICQL-NPNNDIGYYSAKCPKP---LK----------------N 108 (222)
T ss_pred EEEEeCCCCHHHHHHHHHCh-hhhhhhhhh-hceeEEEEEc-CCCCEEEEEEeECCCC---CC----------------C
Confidence 34555 68999999999986 477999996 7777877743 1123444444432111 10 1
Q ss_pred cceeeeeEEEEE-ecCCCceEEEEEEeCc-cc--cc---eeEEEEEEEEEecCCC-cEEEEEEEEEecCC
Q 038195 82 QHFVEKMKEKVE-LDPENKTVAMVVIEGD-LM--KH---FKSYKVIIKVIPKSEG-SLVKWIWEYEKLQE 143 (172)
Q Consensus 82 ~~~~~~~kEri~-~D~~~~~i~Y~vieGd-l~--~~---~~s~~~t~~v~p~~dG-s~v~w~~~ye~~~~ 143 (172)
..++--+.. -++....+...-+.-+ .. +. ...+.+-+.+.|.+++ |.+.|.....+.+.
T Consensus 109 ---RDfV~~r~~~~~~~~~vi~~~sv~~~~~P~~~g~VR~~~~~~g~~i~p~~~~~t~vt~~~~~Dp~G~ 175 (222)
T cd08871 109 ---RDFVNLRSWLEFGGEYIIFNHSVKHKKYPPRKGFVRAISLLTGYLIRPTGPKGCTLTYVTQNDPKGS 175 (222)
T ss_pred ---CeEEEEEEEEeCCCEEEEEeccccCCCCCCCCCeEEeEEEccEEEEEECCCCCEEEEEEEecCCCCC
Confidence 222333333 2332222222222211 21 11 2345667788898665 99999988888874
No 66
>COG4276 Uncharacterized conserved protein [Function unknown]
Probab=70.89 E-value=50 Score=26.06 Aligned_cols=115 Identities=16% Similarity=0.246 Sum_probs=70.4
Q ss_pred eEEEEcCCHHHHHHHhhcCCcccCCcCCCCeeeEEEEecccCCCCcEEEEEeecCCCCCcccchhccccccccccccccc
Q 038195 3 TEVEIKSPADKFYNTFSSKAHTVPNMSPGNLHGVEVHEGDWESHGSVKSWTFSAGDFPATRTEEQTQSSHLRGLHYQWSQ 82 (172)
Q Consensus 3 ~e~~i~apa~kvw~~~~d~~~~lpk~~P~~v~sve~~eGd~g~~Gsvr~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~ 82 (172)
....|+||.+.||+..+... .|..+-|... |-.-+|+.-+.|+-.......=|-|+ .+.|
T Consensus 6 ~~~~i~aP~E~VWafhsrpd-~lq~LTppw~--VV~p~g~eitqgtri~m~l~pfglp~---------------~~tW-- 65 (153)
T COG4276 6 YRTTITAPHEMVWAFHSRPD-ALQRLTPPWI--VVLPLGSEITQGTRIAMGLTPFGLPA---------------GLTW-- 65 (153)
T ss_pred EeeEecCCHHHHhhhhcCcc-HHHhcCCCcE--EeccCCCcccceeeeeecceeecCCC---------------CceE--
Confidence 45789999999999999775 5556777533 33445542234433222221112111 1345
Q ss_pred ceeeeeEEEEEecCCCceEEEEEEeCccccceeEEEEEEEEEecCCCcEEEEEEEEEecCC
Q 038195 83 HFVEKMKEKVELDPENKTVAMVVIEGDLMKHFKSYKVIIKVIPKSEGSLVKWIWEYEKLQE 143 (172)
Q Consensus 83 ~~~~~~kEri~~D~~~~~i~Y~vieGdl~~~~~s~~~t~~v~p~~dGs~v~w~~~ye~~~~ 143 (172)
.....|+= . +.-.+++=+.|.|.+... ....+-+|.+.++|++..=.+.|+....
T Consensus 66 --~Arhte~~-~-d~~~~FtDv~i~gPfp~~--~WrHtH~F~~egg~TvliD~Vsye~p~g 120 (153)
T COG4276 66 --VARHTESG-F-DNGSRFTDVCITGPFPAL--NWRHTHNFVDEGGGTVLIDSVSYELPAG 120 (153)
T ss_pred --EEEeeecc-c-CCcceeeeeeecCCccce--eeEEEeeeecCCCcEEEEeeEEeeccCc
Confidence 33333222 3 444567788888886432 4666778889888899999999998765
No 67
>PF11687 DUF3284: Domain of unknown function (DUF3284); InterPro: IPR021701 This family of proteins with unknown function appears to be restricted to Firmicutes.
Probab=56.31 E-value=81 Score=23.43 Aligned_cols=47 Identities=21% Similarity=0.263 Sum_probs=29.3
Q ss_pred EEEE-ecCCCceEEEEEEeCccccceeEEEEEEEEEecCCC-cEEEEEEEEEecC
Q 038195 90 EKVE-LDPENKTVAMVVIEGDLMKHFKSYKVIIKVIPKSEG-SLVKWIWEYEKLQ 142 (172)
Q Consensus 90 Eri~-~D~~~~~i~Y~vieGdl~~~~~s~~~t~~v~p~~dG-s~v~w~~~ye~~~ 142 (172)
=+|+ + ..++.|.++... ....+..+-.+.|-++| |.|..+=+++..+
T Consensus 56 v~It~~-~~~~~Y~~~~~s-----~~~~~~i~Y~i~~~~~~~~~v~y~E~~~~~~ 104 (120)
T PF11687_consen 56 VKITEY-EPNKRYAATFSS-----SRGTFTISYEIEPLDDGSIEVTYEEEYESKG 104 (120)
T ss_pred EEEEEE-cCCCEEEEEEEe-----cCCCEEEEEEEEECCCCcEEEEEEEEEccCC
Confidence 3455 4 445566666542 22346666788899999 8777776666544
No 68
>cd08867 START_STARD4_5_6-like Lipid-binding START domain of mammalian STARD4, -5, -6, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD4, -5, and -6. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD4 plays an important role in steroidogenesis, trafficking cholesterol into mitochondria. It specifically binds cholesterol, and demonstrates limited binding to another sterol, 7a-hydroxycholesterol. STARD4 and STARD5 are ubiquitously expressed, with highest levels in liver and kidney. STRAD5 functions in the kidney within the proximal tubule cells where it is associated with the Endoplasmic Reticulum (ER), and may participate in ER-associated cholesterol transport. It binds cholesterol and 25-hydroxycholesterol. Expression
Probab=49.05 E-value=1.3e+02 Score=23.83 Aligned_cols=140 Identities=9% Similarity=-0.045 Sum_probs=74.3
Q ss_pred eEEEEcCCHHHHHHHhhcC-CcccCCcCCCCeeeEEEEecccCCCCcEEEEEeecCCCCCcccchhcccccccccccccc
Q 038195 3 TEVEIKSPADKFYNTFSSK-AHTVPNMSPGNLHGVEVHEGDWESHGSVKSWTFSAGDFPATRTEEQTQSSHLRGLHYQWS 81 (172)
Q Consensus 3 ~e~~i~apa~kvw~~~~d~-~~~lpk~~P~~v~sve~~eGd~g~~Gsvr~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~ 81 (172)
.+..|+++++.+++.+.+. ....++|.+. +.++++++.-. ..+ ..+.+....+ ++.+.-.
T Consensus 50 ~~~~i~~~~~~v~~~l~d~~~~~r~~Wd~~-~~~~~~le~id--~~~-~i~~~~~p~~---------------~~~~vs~ 110 (206)
T cd08867 50 AEGIVDALPEKVIDVIIPPCGGLRLKWDKS-LKHYEVLEKIS--EDL-CVGRTITPSA---------------AMGLISP 110 (206)
T ss_pred EEEEEcCCHHHHHHHHHhcCcccccccccc-ccceEEEEEeC--CCe-EEEEEEcccc---------------ccCccCC
Confidence 5788999999999999982 2356899985 88999998641 122 2222221111 0011222
Q ss_pred cceeeeeEEEEE-ecCCCceEEEEEEeCccc---cc---eeEEEEEEEEEecC--CC-cEEEEEEEEEecCCCCCChhhh
Q 038195 82 QHFVEKMKEKVE-LDPENKTVAMVVIEGDLM---KH---FKSYKVIIKVIPKS--EG-SLVKWIWEYEKLQEDGPTPSKY 151 (172)
Q Consensus 82 ~~~~~~~kEri~-~D~~~~~i~Y~vieGdl~---~~---~~s~~~t~~v~p~~--dG-s~v~w~~~ye~~~~~~~~p~~~ 151 (172)
|+++-. +... +++....+...-++-+.. +. ...+.+-+-+.|.+ .+ |.++|.+...++|.- |.-+
T Consensus 111 RDfV~~--~~~~~~~~~~~~i~~~Sv~hp~~p~~~~~VR~~~~~~g~~i~p~~~~~~~t~~~~~~~~DpkG~i---P~~l 185 (206)
T cd08867 111 RDFVDL--VYVKRYEDNQWSSSGKSVDIPERPPTPGFVRGYNHPCGYFCSPLKGSPDKSFLVLYVQTDLRGMI---PQSL 185 (206)
T ss_pred cceEEE--EEEEEeCCCeEEEEEEeccCCCCCCCCCcEEEEeecCEEEEEECCCCCCceEEEEEEEeccCCCC---cHHH
Confidence 332211 2122 444333334343432211 11 22344455666653 34 999999999999752 3332
Q ss_pred h-----HHHHHHHHHHHHHH
Q 038195 152 V-----DFVTDLTKNIDAHL 166 (172)
Q Consensus 152 ~-----~~~~~~~k~ie~yl 166 (172)
. +.+...++.|-.||
T Consensus 186 vn~~~~~~~~~~~~~lr~~~ 205 (206)
T cd08867 186 VESAMPSNLVNFYTDLVKGV 205 (206)
T ss_pred HHhhhhhhHHHHHHHHHHhc
Confidence 2 23445556555554
No 69
>PF10651 DUF2479: Domain of unknown function (DUF2479); InterPro: IPR018913 This domain is found in phage from a number of different bacteria including (Listeria phage A118 (Bacteriophage A118)). It is thought to be a putative long tail fibre protein.; PDB: 4DIV_L 3UH8_A.
Probab=47.40 E-value=1.4e+02 Score=23.39 Aligned_cols=102 Identities=16% Similarity=0.238 Sum_probs=54.4
Q ss_pred eeeEEEEecccCCCCcEEEEEeecCCCCCcccchhcccccccccccccccceeeeeEEEEE-ecCCCceEEEEEEeCccc
Q 038195 33 LHGVEVHEGDWESHGSVKSWTFSAGDFPATRTEEQTQSSHLRGLHYQWSQHFVEKMKEKVE-LDPENKTVAMVVIEGDLM 111 (172)
Q Consensus 33 v~sve~~eGd~g~~Gsvr~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kEri~-~D~~~~~i~Y~vieGdl~ 111 (172)
-..|....||. -..+-.+++...|.|...+....... |.+.- .+...++.+-++ +|+.+-.+.|++-+- .+
T Consensus 22 ~~~I~f~~~D~--nta~l~~~I~~ng~pldLs~~~v~~~----l~l~~-~dg~~~~~~~~~i~d~~~G~i~y~lp~~-~l 93 (170)
T PF10651_consen 22 NTGIRFYQGDK--NTAKLRFNITKNGQPLDLSGANVTFK----LVLKM-SDGSIFIQDDVEIVDPTNGIIQYTLPDE-FL 93 (170)
T ss_dssp -S-EEEESS-S--STEEEEEEEEETTEE---TTSEEEEE----EE-TT-TTSSSSEEEE-SEEETTTTEEEEE--TT-TT
T ss_pred ccceEEEECCC--CeEEEEEEEEECCEEEECCCCeEEEE----EEEEc-CCCcEEEEecceEEcCcCcEEEEEECHH-Hh
Confidence 45688889983 23455667777777544432211111 00000 111245678888 999999999998654 44
Q ss_pred cceeEEEEEEEEEecCCC-cEEEEEEEEEecC
Q 038195 112 KHFKSYKVIIKVIPKSEG-SLVKWIWEYEKLQ 142 (172)
Q Consensus 112 ~~~~s~~~t~~v~p~~dG-s~v~w~~~ye~~~ 142 (172)
.....+.+.+-+.-.++| +...-.+.|+-..
T Consensus 94 ~~~G~v~a~~~i~~~~~~~~~~t~~F~F~V~~ 125 (170)
T PF10651_consen 94 KHVGKVKAQLFIYYNGDGQSISTANFTFEVED 125 (170)
T ss_dssp HSSEEEEEEEEEEEESSSEEEE---EEEEEE-
T ss_pred ccCcEEEEEEEEEECCCCCEEEEeeEEEEEec
Confidence 567888888888876666 5555556665443
No 70
>PF01852 START: START domain; InterPro: IPR002913 START (StAR-related lipid-transfer) is a lipid-binding domain in StAR, HD-ZIP and signalling proteins []. StAR (Steroidogenic Acute Regulatory protein) is a mitochondrial protein that is synthesised in response to luteinising hormone stimulation []. Expression of the protein in the absence of hormone stimulation is sufficient to induce steroid production, suggesting that this protein is required in the acute regulation of steroidogenesis. Representatives of the START domain family have been shown to bind different ligands such as sterols (StAR protein) and phosphatidylcholine (PC-TP). Ligand binding by the START domain can also regulate the activities of other domains that co-occur with the START domain in multidomain proteins such as Rho-gap, the homeodomain, and the thioesterase domain [, ]. The crystal structure of START domain of human MLN64 shows an alpha/beta fold built around an U-shaped incomplete beta-barrel. Most importantly, the interior of the protein encompasses a 26 x 12 x 11 Angstroms hydrophobic tunnel that is apparently large enough to bind a single cholesterol molecule []. The START domain structure revealed an unexpected similarity to that of the birch pollen allergen Bet v 1 and to bacterial polyketide cyclases/aromatases [, ]. ; PDB: 1JSS_B 2R55_B 1LN3_B 1LN1_A 1LN2_B 3FO5_A 2Z9Y_A 2E3R_A 3H3Q_B 2E3P_B ....
Probab=45.27 E-value=1.4e+02 Score=23.07 Aligned_cols=140 Identities=11% Similarity=0.022 Sum_probs=84.5
Q ss_pred eEEEEcCCHHHHHHHhhcCCcccCCcCCCCeeeEEEEecccCCCCcEEEEEeecCCCCCcccchhccccccccccccccc
Q 038195 3 TEVEIKSPADKFYNTFSSKAHTVPNMSPGNLHGVEVHEGDWESHGSVKSWTFSAGDFPATRTEEQTQSSHLRGLHYQWSQ 82 (172)
Q Consensus 3 ~e~~i~apa~kvw~~~~d~~~~lpk~~P~~v~sve~~eGd~g~~Gsvr~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~ 82 (172)
.+..+.++++.++..+.+.. . +|-+. +.++++++--. ....|..+.+..... .+. ..|
T Consensus 50 ~~~~v~~~~~~~~~~~~~~~-~--~Wd~~-~~~~~~le~~~-~~~~i~~~~~~~~~~-~p~----------------~~R 107 (206)
T PF01852_consen 50 AEGVVPASPEQVVEDLLDDR-E--QWDKM-CVEAEVLEQID-EDTDIVYFVMKSPWP-GPV----------------SPR 107 (206)
T ss_dssp EEEEESSCHHHHHHHHHCGG-G--HHSTT-EEEEEEEEEEE-TTEEEEEEEEE-CTT-TTS----------------SEE
T ss_pred EEEEEcCChHHHHHHHHhhH-h--hcccc-hhhheeeeecC-CCCeEEEEEecccCC-CCC----------------CCc
Confidence 46778999998888888764 2 89995 88999988521 225666665544331 011 112
Q ss_pred ceeeeeEEEEE-e-cCCCceEEEEEEeCc-cc---c---ceeEEEEEEEEEecCCC-cEEEEEEEEEecCCCCCChhhhh
Q 038195 83 HFVEKMKEKVE-L-DPENKTVAMVVIEGD-LM---K---HFKSYKVIIKVIPKSEG-SLVKWIWEYEKLQEDGPTPSKYV 152 (172)
Q Consensus 83 ~~~~~~kEri~-~-D~~~~~i~Y~vieGd-l~---~---~~~s~~~t~~v~p~~dG-s~v~w~~~ye~~~~~~~~p~~~~ 152 (172)
+ ++--+.. . .+....+..+=++.. .. + ....+.+-+.+.|.++| |.|.+...-++.+.. |.-+.
T Consensus 108 D---fv~~~~~~~~~~~~~~i~~~Si~~~~~~~~~~~~VR~~~~~s~~~i~~~~~~~~~vt~~~~~D~~G~i---P~~~~ 181 (206)
T PF01852_consen 108 D---FVFLRSWRKDEDGTYVIVSRSIDHPQYPPNSKGYVRAEILISGWVIRPLGDGRTRVTYVSQVDPKGWI---PSWLV 181 (206)
T ss_dssp E---EEEEEEEEECTTSEEEEEEEEEEBTTSSTT-TTSEEEEEESEEEEEEEETTCEEEEEEEEEEESSSSS---HHHHH
T ss_pred E---EEEEEEEEEeccceEEEEEeeeccccccccccCcceeeeeeEeEEEEEccCCCceEEEEEEECCCCCC---hHHHH
Confidence 2 2323333 3 444455665555444 21 1 24567788899999999 999999988888742 33322
Q ss_pred -----HHHHHHHHHHHHHHhhcc
Q 038195 153 -----DFVTDLTKNIDAHLLKEE 170 (172)
Q Consensus 153 -----~~~~~~~k~ie~ylla~~ 170 (172)
.....+++.+-++|..+.
T Consensus 182 n~~~~~~~~~~~~~~~~~~~~~~ 204 (206)
T PF01852_consen 182 NMVVKSQPPNFLKNLRKALKKQK 204 (206)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHhHHHHHHHHHHHHHHhc
Confidence 244555566666665544
No 71
>PLN00188 enhanced disease resistance protein (EDR2); Provisional
Probab=43.73 E-value=3.3e+02 Score=26.87 Aligned_cols=150 Identities=10% Similarity=0.085 Sum_probs=84.1
Q ss_pred ceEEEEcCCHHHHHHHhhcCCcccCCcCCCCeeeEEEEecccCCCCcEEEEEeecCCCCCcccchhcccccccccccccc
Q 038195 2 ETEVEIKSPADKFYNTFSSKAHTVPNMSPGNLHGVEVHEGDWESHGSVKSWTFSAGDFPATRTEEQTQSSHLRGLHYQWS 81 (172)
Q Consensus 2 ~~e~~i~apa~kvw~~~~d~~~~lpk~~P~~v~sve~~eGd~g~~Gsvr~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~ 81 (172)
-++-.|.|+|+.+|+.+.+....-++|=. .++.++++|-= .+.=.|-..++..+.. +.+.|.
T Consensus 230 KavGVV~aspE~Ifd~Vm~~~~~R~eWD~-~~~~~~vIE~I-D~htdI~Y~~~~~~~~----------------~~~isp 291 (719)
T PLN00188 230 KAVGVVEATCEEIFELVMSMDGTRFEWDC-SFQYGSLVEEV-DGHTAILYHRLQLDWF----------------PMFVWP 291 (719)
T ss_pred EEEEEecCCHHHHHHHHhccCcccccchh-cccceEEEEEe-cCCeEEEEEEeccccc----------------cCccCc
Confidence 34567899999999999866446678876 58888888742 1223444445543321 123555
Q ss_pred cceeeeeEEEEEecCCCceEEEEEEeCc---cccce---eEEEEEEEEEe--cCC---CcEEEEEEEEEecCCC-CCChh
Q 038195 82 QHFVEKMKEKVELDPENKTVAMVVIEGD---LMKHF---KSYKVIIKVIP--KSE---GSLVKWIWEYEKLQED-GPTPS 149 (172)
Q Consensus 82 ~~~~~~~kEri~~D~~~~~i~Y~vieGd---l~~~~---~s~~~t~~v~p--~~d---Gs~v~w~~~ye~~~~~-~~~p~ 149 (172)
|++ -.+..-...+|-...+.|.=++-. ....| .....-+-+.| ... .|.|+|.++.+.++=. .--|.
T Consensus 292 RDF-V~~Rywrr~eDGsYvil~~Sv~Hp~cPP~kG~VRg~~~pGGwiIsPL~~~~g~~r~lv~~~lqtDlkGW~~~y~~s 370 (719)
T PLN00188 292 RDL-CYVRYWRRNDDGSYVVLFRSREHENCGPQPGFVRAHLESGGFNISPLKPRNGRPRTQVQHLMQIDLKGWGVGYIPS 370 (719)
T ss_pred cee-EEEEEEEEcCCCcEEEeeeeeecCCCCCCCCeEEEEEeCCEEEEEECCCCCCCCceEEEEEEEEccCccccccCcc
Confidence 552 222222225555556666555543 11111 12234566777 223 3999999999988722 11233
Q ss_pred hhhHHHHHHHHHHH---HHHhhcc
Q 038195 150 KYVDFVTDLTKNID---AHLLKEE 170 (172)
Q Consensus 150 ~~~~~~~~~~k~ie---~ylla~~ 170 (172)
-.......|+..|. .|..++|
T Consensus 371 ~~~~~~l~mL~~VAgLrE~~~~~~ 394 (719)
T PLN00188 371 FQQHCLLQMLNSVAGLREWFSQTD 394 (719)
T ss_pred ccccchHHHHHHHHHHHHHHhcCc
Confidence 33445666665554 3555544
No 72
>KOG3309 consensus Ferredoxin [Energy production and conversion]
Probab=33.66 E-value=25 Score=28.06 Aligned_cols=67 Identities=25% Similarity=0.373 Sum_probs=41.9
Q ss_pred EEEE-ecCCCceEEEEEEeCc-cccceeEEEEEEEEEecCCC----cEEEEEEE---EEecCCCCCChhhhhHHHHHH
Q 038195 90 EKVE-LDPENKTVAMVVIEGD-LMKHFKSYKVIIKVIPKSEG----SLVKWIWE---YEKLQEDGPTPSKYVDFVTDL 158 (172)
Q Consensus 90 Eri~-~D~~~~~i~Y~vieGd-l~~~~~s~~~t~~v~p~~dG----s~v~w~~~---ye~~~~~~~~p~~~~~~~~~~ 158 (172)
=+|. +|.+...+.++...|| |++-.-.. -+-.+...+| |.+...++ |++.++....+.+++|.+-++
T Consensus 44 i~Itfv~~dG~~~~i~g~vGdtlLd~ah~n--~idleGACEgslACSTCHViv~~~~yekl~ep~DeE~DmLDlA~gL 119 (159)
T KOG3309|consen 44 IKITFVDPDGEEIKIKGKVGDTLLDAAHEN--NLDLEGACEGSLACSTCHVIVDEEYYEKLPEPEDEENDMLDLAFGL 119 (159)
T ss_pred EEEEEECCCCCEEEeeeecchHHHHHHHHc--CCCccccccccccccceEEEEcHHHHhcCCCCcchHHHHHHhhhcc
Confidence 5677 8999999999999999 65432222 2233334455 55666665 665555444566677766554
No 73
>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=29.92 E-value=1.7e+02 Score=20.99 Aligned_cols=18 Identities=39% Similarity=0.643 Sum_probs=14.2
Q ss_pred cCCcCCCCeeeEEEEecc
Q 038195 25 VPNMSPGNLHGVEVHEGD 42 (172)
Q Consensus 25 lpk~~P~~v~sve~~eGd 42 (172)
+|+|-++..+.+.+.||+
T Consensus 2 ~~~~~~~~~~~v~V~eG~ 19 (95)
T cd05845 2 TPKWPKEKIRPVEVEEGD 19 (95)
T ss_pred CCcCCccccceeEEecCC
Confidence 466777767889999998
No 74
>cd08910 START_STARD2-like Lipid-binding START domain of mammalian STARD2 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD2 (also known as phosphatidylcholine transfer protein/PC-TP) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD2 is a cytosolic phosphatidycholine (PtdCho) transfer protein, which traffics PtdCho, the most common class of phospholipids in eukaryotes, between membranes. It represents a minimal START domain structure. STARD2 plays roles in hepatic cholesterol metabolism, in the development of atherosclerosis, and may have a mitochondrial function.
Probab=27.90 E-value=3.2e+02 Score=21.95 Aligned_cols=136 Identities=11% Similarity=0.074 Sum_probs=69.6
Q ss_pred eEEEEc-CCHHHHHHHhhcCCcccCCcCCCCeeeEEEEecccCCCCc-EEEEEeecCCCCCcccchhccccccccccccc
Q 038195 3 TEVEIK-SPADKFYNTFSSKAHTVPNMSPGNLHGVEVHEGDWESHGS-VKSWTFSAGDFPATRTEEQTQSSHLRGLHYQW 80 (172)
Q Consensus 3 ~e~~i~-apa~kvw~~~~d~~~~lpk~~P~~v~sve~~eGd~g~~Gs-vr~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~ 80 (172)
++..+. ++++.+++++.|.. ..++|.+. +.++ ++-. ..|+ |-.+.+.. + .|.+
T Consensus 53 ~~~~~~~~s~~~~~~~l~D~~-~r~~Wd~~-~~~~--~~~~--~~~~~i~y~~~k~--P-wPvs---------------- 107 (207)
T cd08910 53 VFGVLEDCSPSLLADVYMDLE-YRKQWDQY-VKEL--YEKE--CDGETVIYWEVKY--P-FPLS---------------- 107 (207)
T ss_pred EEEEEcCCCHHHHHHHHhCHH-HHHHHHHH-HHhh--eeec--CCCCEEEEEEEEc--C-CCCC----------------
Confidence 456676 79999999999874 77899996 4443 2211 1122 33343322 1 1111
Q ss_pred ccceeeeeEEEEEecCCCceEEE---EEEeCc-ccc-----ceeEEEEEEEEEecCCC-cEEEEEEEEEecCCCCCChhh
Q 038195 81 SQHFVEKMKEKVELDPENKTVAM---VVIEGD-LMK-----HFKSYKVIIKVIPKSEG-SLVKWIWEYEKLQEDGPTPSK 150 (172)
Q Consensus 81 ~~~~~~~~kEri~~D~~~~~i~Y---~vieGd-l~~-----~~~s~~~t~~v~p~~dG-s~v~w~~~ye~~~~~~~~p~~ 150 (172)
.|+ +-+.+.+..+|.++..+.. ..++=+ ++. ....|.+.+.++|.+++ |.+.+...-++.+. .|.--
T Consensus 108 ~RD-~V~~r~~~~~~~~~~~~~iv~~~s~~~p~~P~~~~~VRv~~~~~~~~i~p~~~~~t~i~~~~~~DPgG~--IP~wl 184 (207)
T cd08910 108 NRD-YVYIRQRRDLDVEGRKIWVILARSTSLPQLPEKPGVIRVKQYKQSLAIESDGKKGSKVFMYYFDNPGGM--IPSWL 184 (207)
T ss_pred Cce-EEEEEEeccccCCCCeEEEEEecCCCCCCCCCCCCCEEEEEEEEEEEEEeCCCCceEEEEEEEeCCCCc--chHHH
Confidence 122 1112222235544432211 122211 111 25688899999987665 87777776666553 32222
Q ss_pred hh----HHHHHHHHHHHHHH
Q 038195 151 YV----DFVTDLTKNIDAHL 166 (172)
Q Consensus 151 ~~----~~~~~~~k~ie~yl 166 (172)
++ .....+++.|...+
T Consensus 185 vN~~~~~~~~~~l~~l~ka~ 204 (207)
T cd08910 185 INWAAKNGVPNFLKDMQKAC 204 (207)
T ss_pred HHHHHHHhhHHHHHHHHHHH
Confidence 22 23445555555444
No 75
>PF11619 P53_C: Transcription factor P53 - C terminal domain; InterPro: IPR024631 The p53 tumour suppressor [, , , , ] is a protein found in increased amounts in a wide variety of transformed cells. It is also detectable in many proliferating non-transformed cells, but it is undetectable or present at low levels in resting cells. It is frequently mutated or inactivated in many types of cancer. p53 seems to act as a tumour suppressor in some, but probably not all, tumour types. p53 has been implicated in cell cycle regulation, particularly in the monitoring of genomic DNA integrity prior to replication; for this reason it has been dubbed `guardian of the genome'. p53 is a sequence-specific DNA-binding protein and transcription factor. The structure of p53 comprises 4 domains: an N-terminal transactivation domain; a central DNA-binding domain; an oligomerisation domain; and a C-terminal, basic, regulatory domain [, ]. The structure of the oligomerisation domain consists of a dimer of dimers, each dimer consisting of 2 anti-parallel alpha-helices and an anti-parallel beta-sheet. The sheets lie on opposite sides of the tetramer and the helices form an unusual 4-helix bundle [, ]. While the majority of p53 mutations found in human cancers are located in the DNA-binding domain, some are also found in the oligomerisation domain. This entry represents the C-terminal domain of Drosophila transcription factor p53. While the rest of the protein is quite conserved between the different transcription factors such as p53 and p73, the C-terminal domain is highly divergent. The Drosophila p53 structure is characterised by an additional N-terminal beta-strand and a C-terminal helix [].; PDB: 2RP4_B.
Probab=24.88 E-value=2.4e+02 Score=19.46 Aligned_cols=44 Identities=11% Similarity=0.172 Sum_probs=28.8
Q ss_pred EEEEEecCCC-cEEEEEEEEEecCCCCCChhhhhHHHHHHHHHHHHHHhhccCC
Q 038195 120 IIKVIPKSEG-SLVKWIWEYEKLQEDGPTPSKYVDFVTDLTKNIDAHLLKEEQN 172 (172)
Q Consensus 120 t~~v~p~~dG-s~v~w~~~ye~~~~~~~~p~~~~~~~~~~~k~ie~ylla~~~~ 172 (172)
.|.|....|| =. ..+.| |.-+-+++...+|++.-...++.||++
T Consensus 6 dW~Vsrt~dGdYr--L~itc-------p~Ke~LlqSIEgmi~~~A~~vLRnP~~ 50 (71)
T PF11619_consen 6 DWEVSRTLDGDYR--LVITC-------PKKEWLLQSIEGMIKEAAVEVLRNPNK 50 (71)
T ss_dssp S-EEEEETTTCEE--EEEEE-------SSHHHHHHHHHHHHHHHHHHHHH-TT-
T ss_pred cceeeeccCCceE--EEEec-------CcHHHHHHHHHHHHHHHHHHHHhCCcH
Confidence 4566666676 32 22333 344567889999999999999999975
No 76
>PF14801 GCD14_N: tRNA methyltransferase complex GCD14 subunit N-term; PDB: 1I9G_A.
Probab=24.74 E-value=20 Score=23.72 Aligned_cols=22 Identities=18% Similarity=0.431 Sum_probs=14.1
Q ss_pred EEEEE-ecCCCceEEEEEEeCcc
Q 038195 89 KEKVE-LDPENKTVAMVVIEGDL 110 (172)
Q Consensus 89 kEri~-~D~~~~~i~Y~vieGdl 110 (172)
=||+. -|+..+.++..+..|..
T Consensus 9 GdrVQlTD~Kgr~~Ti~L~~G~~ 31 (54)
T PF14801_consen 9 GDRVQLTDPKGRKHTITLEPGGE 31 (54)
T ss_dssp T-EEEEEETT--EEEEE--TT-E
T ss_pred CCEEEEccCCCCeeeEEECCCCe
Confidence 38999 89999999999999885
No 77
>PF02087 Nitrophorin: Nitrophorin; InterPro: IPR002351 Nitrophorins are haemoproteins found in saliva of blood-feeding insects [, ]. Saliva of the blood-sucking bug Rhodnius prolixus (Triatomid bug) contains four homologous nitrophorins, designated NP1 to NP4 in order of their relative abundance in the glands []. As isolated, nitrophorins contain nitric oxide (NO) ligated to the ferric (FeIII) haem iron. Histamine, which is released by the host in response to tissue damage, is another nitrophorin ligand. Nitrophorins transport NO to the feeding site. Dilution, binding of histamine and increase in pH (from pH ~5 in salivary gland to pH ~7.4 in the host tissue) facilitate the release of NO into the tissue where it induces vasodilatation. The salivary nitrophorin from the hemipteran Cimex lectularius (Bed bug) has no sequence similarity to R. prolixus nitrophorins. It is suggested that the two classes of insect nitrophorins have arisen as a product of the convergent evolution []. 3-D structures of several nitrophorin complexes are known []. The nitrophorin structures reveal lipocalin-like eight-stranded beta-barrel, three alpha-helices and two disulphide bonds, with haem inserted into one end of the barrel. Members of the lipocalin family are known to bind a variety of small hydrophobic ligands, including biliverdin, in a similar fashion (see [] for review). The haem iron is ligated to His59. The position of His59 is restrained through water-mediated hydrogen bond to the carboxylate of Asp70. The His59-Fe bond is bent ~15 degrees out of the imidazole plane. Asp70 forms an unusual hydrogen bond with one of the haem propionates, suggesting the residue has an altered pKa. In NP1-histamine structure, the planes of His59 and histamine imidazole rings lie in an arrangement almost identical to that found in oxidised cytochrome b5. This entry represents the nitrophorin structural domain.; GO: 0051381 histamine binding, 0070026 nitric oxide binding; PDB: 1SXX_A 2OFM_X 1X8Q_A 3TGA_A 1SXU_A 1IKJ_A 1YWD_A 1X8N_A 3FLL_A 1X8O_A ....
Probab=20.54 E-value=3.6e+02 Score=21.93 Aligned_cols=24 Identities=33% Similarity=0.403 Sum_probs=19.3
Q ss_pred eEEEEE-ecCCCceEEEEEEeCccc
Q 038195 88 MKEKVE-LDPENKTVAMVVIEGDLM 111 (172)
Q Consensus 88 ~kEri~-~D~~~~~i~Y~vieGdl~ 111 (172)
+||-+- +++.+.++.|.+-++.+.
T Consensus 50 vKE~~~~ynp~~~~~~Y~is~~~l~ 74 (178)
T PF02087_consen 50 VKEALYHYNPKNKTYFYDISESKLE 74 (178)
T ss_dssp EEEEEEEEETTTTEEEEEEEEEEEE
T ss_pred eEEEEEEecCCCceEEEEeeeeecc
Confidence 788888 888888888888777653
Done!