BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 038196
(122 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1ZXU|A Chain A, X-Ray Structure Of Protein From Arabidopsis Thaliana
At5g01750
pdb|2Q4M|A Chain A, Ensemble Refinement Of The Crystal Structure Of Protein
From Arabidopsis Thaliana At5g01750
Length = 217
Score = 41.6 bits (96), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 38/69 (55%), Gaps = 1/69 (1%)
Query: 43 NFEVKGYFPDKYCII-VDPSGNIVAQIGVKKEIEDLMESKDLYHIVVKPGIDQAFIAVVI 101
+F VKG + ++ C++ S IVAQ K ++ + KD + + V P +D AFIA ++
Sbjct: 145 DFRVKGSWLERSCVVYAGESDAIVAQXHRKHTVQSVFLGKDNFSVTVYPNVDYAFIASLV 204
Query: 102 ATLDYIYGE 110
LD + E
Sbjct: 205 VILDDVNRE 213
>pdb|1F89|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae Nit3, A
Member Of Branch 10 Of The Nitrilase Superfamily
pdb|1F89|B Chain B, Crystal Structure Of Saccharomyces Cerevisiae Nit3, A
Member Of Branch 10 Of The Nitrilase Superfamily
Length = 291
Score = 26.9 bits (58), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 11/21 (52%), Positives = 15/21 (71%)
Query: 54 YCIIVDPSGNIVAQIGVKKEI 74
+ I+VDP G IVA+ G +EI
Sbjct: 237 HSIVVDPRGKIVAEAGEGEEI 257
>pdb|2IV0|A Chain A, Thermal Stability Of Isocitrate Dehydrogenase From
Archaeoglobus Fulgidus Studied By Crystal Structure
Analysis And Engineering Of Chimers
pdb|2IV0|B Chain B, Thermal Stability Of Isocitrate Dehydrogenase From
Archaeoglobus Fulgidus Studied By Crystal Structure
Analysis And Engineering Of Chimers
Length = 412
Score = 26.6 bits (57), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 22/94 (23%), Positives = 38/94 (40%), Gaps = 11/94 (11%)
Query: 22 SSCLVRNSSIRISTETTARSNNFEVKGYFPDKYCIIVD----------PSGNIVAQIGVK 71
S LV +I TE R +EV +YCI D P G IV + +
Sbjct: 217 SVTLVHKGNIMKYTEGAFRDWGYEVAKQEFGEYCITEDELWDKYGGKQPEGKIVVKDRIA 276
Query: 72 KEI-EDLMESKDLYHIVVKPGIDQAFIAVVIATL 104
+ + ++ D Y ++ P ++ +++ A L
Sbjct: 277 DNMFQQILTRTDEYDVIALPNLNGDYLSDAAAAL 310
>pdb|3OUL|A Chain A, Crystal Structure Of Toxoflavin-Degrading Enzyme In A
Substrate-Free Form
pdb|3OUM|A Chain A, Crystal Structure Of Toxoflavin-Degrading Enzyme In
Complex With Toxoflavin
Length = 232
Score = 26.2 bits (56), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 3/35 (8%)
Query: 41 SNNFEVKGYFP--DKY-CIIVDPSGNIVAQIGVKK 72
+ N E + YFP + Y C + DPSGNI+ I ++
Sbjct: 85 TENDEDQAYFPFFNAYSCYVEDPSGNIIELISRQQ 119
>pdb|3PKV|A Chain A, Crystal Structure Of Toxoflavin Lyase (Tfla)
pdb|3PKW|A Chain A, Crystal Structure Of Toxoflavin Lyase (Tfla) Bound To
Mn(Ii)
pdb|3PKX|A Chain A, Crystal Structure Of Toxoflavin Lyase (Tfla) Bound To
Mn(Ii) And Toxoflavin
Length = 252
Score = 26.2 bits (56), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 3/35 (8%)
Query: 41 SNNFEVKGYFP--DKY-CIIVDPSGNIVAQIGVKK 72
+ N E + YFP + Y C + DPSGNI+ I ++
Sbjct: 108 TENDEDQAYFPFFNAYSCYVEDPSGNIIELISRQQ 142
>pdb|2D1F|A Chain A, Structure Of Mycobacterium Tuberculosis Threonine Synthase
pdb|2D1F|B Chain B, Structure Of Mycobacterium Tuberculosis Threonine Synthase
Length = 360
Score = 26.2 bits (56), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 23/47 (48%)
Query: 20 PNSSCLVRNSSIRISTETTARSNNFEVKGYFPDKYCIIVDPSGNIVA 66
P S + + +RI + TA +V G PD + + V +GNI A
Sbjct: 157 PTISLVNSVNPVRIEGQKTAAFEIVDVLGTAPDVHALPVGNAGNITA 203
>pdb|2X5D|A Chain A, Crystal Structure Of A Probable Aminotransferase From
Pseudomonas Aeruginosa
pdb|2X5D|B Chain B, Crystal Structure Of A Probable Aminotransferase From
Pseudomonas Aeruginosa
pdb|2X5D|C Chain C, Crystal Structure Of A Probable Aminotransferase From
Pseudomonas Aeruginosa
pdb|2X5D|D Chain D, Crystal Structure Of A Probable Aminotransferase From
Pseudomonas Aeruginosa
Length = 412
Score = 25.4 bits (54), Expect = 9.1, Method: Composition-based stats.
Identities = 9/33 (27%), Positives = 18/33 (54%)
Query: 46 VKGYFPDKYCIIVDPSGNIVAQIGVKKEIEDLM 78
+ ++ D+Y + +DP + IG K+ + LM
Sbjct: 84 ISHWYRDRYDVQIDPESEAIVTIGSKEGLAHLM 116
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.138 0.409
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,581,631
Number of Sequences: 62578
Number of extensions: 130480
Number of successful extensions: 319
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 314
Number of HSP's gapped (non-prelim): 8
length of query: 122
length of database: 14,973,337
effective HSP length: 84
effective length of query: 38
effective length of database: 9,716,785
effective search space: 369237830
effective search space used: 369237830
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 45 (21.9 bits)