BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 038196
(122 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|A0MFH4|LOR16_ARATH Protein LURP-one-related 16 OS=Arabidopsis thaliana GN=At5g20640
PE=2 SV=2
Length = 215
Score = 113 bits (282), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 55/121 (45%), Positives = 86/121 (71%), Gaps = 8/121 (6%)
Query: 1 GYAFDYERSKKLVFTLKEPPNSSCLVRNSSIRISTE------TTARSNNFEVKGYFPDKY 54
G+ +D E +++LVFTLK+P +S CLV+NSSI+I ++ R+N E+KG F ++
Sbjct: 96 GFGYDNEGTERLVFTLKDPKDS-CLVQNSSIKILVHGKPPKISSTRNNYVEIKGSFAERA 154
Query: 55 CIIVDPSGNIVAQIGVKKEIEDLM-ESKDLYHIVVKPGIDQAFIAVVIATLDYIYGEYTR 113
C I+D G +A++ ++KE+E+++ KDLYH++VKP +DQ+FI +IA LDYI+GE T
Sbjct: 155 CNIMDSDGKAIAKVRIEKEMEEMVGNKKDLYHVIVKPNVDQSFIVGLIAILDYIHGESTI 214
Query: 114 C 114
C
Sbjct: 215 C 215
>sp|Q9ZUF7|LOR6_ARATH Protein LURP-one-related 6 OS=Arabidopsis thaliana GN=At2g05910
PE=2 SV=1
Length = 191
Score = 105 bits (262), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 56/114 (49%), Positives = 77/114 (67%), Gaps = 9/114 (7%)
Query: 1 GYAFDYERSKKLVFTLKEPPNSSCLVRNSSIRISTETTARSNNFEVKGYFPDKYCIIVDP 60
GY++DY+ S K VFTL++P +S C SSIRIS + F+VKGYFPD+ C IVD
Sbjct: 87 GYSYDYQGSPKPVFTLRDPKHS-CFSITSSIRISVGPG--NCYFDVKGYFPDRDCSIVDS 143
Query: 61 SGNIVAQIGVKKEIEDLMESKDLYHIVVKPGIDQAFIAVVIATLDYIYGEYTRC 114
GN++AQ+ ++ + S+D+Y +V KP +D+AF+ VIA LDYIYGE T C
Sbjct: 144 KGNVIAQV------KEWIGSRDIYKVVTKPSVDKAFVFGVIAVLDYIYGESTSC 191
>sp|Q9SSC7|LOR5_ARATH Protein LURP-one-related 5 OS=Arabidopsis thaliana GN=At1g80120
PE=1 SV=1
Length = 210
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 59/112 (52%), Gaps = 6/112 (5%)
Query: 1 GYAFDYERSKKLVFTLKEPPNSSCLVRNSSIRISTETTARSNNFEVKGYFPDKYCIIVDP 60
GY + +K +F ++ SS + RNS + + + + + ++G F + C +V+
Sbjct: 86 GYLGERSDGQKPIFGVR---RSSIIGRNS-VTVEVYGDYQCSEYLIEGSFGARNCTVVEA 141
Query: 61 -SGNIVAQIGVKKEIE-DLMESKDLYHIVVKPGIDQAFIAVVIATLDYIYGE 110
+ VA+I K + ++M KD++ + VKPG D AF ++ LD IYG+
Sbjct: 142 ETRRKVAEIRRKVDASTNVMLGKDVFSLNVKPGFDGAFAMGLVLVLDQIYGD 193
>sp|Q9SF24|LOR10_ARATH Protein LURP-one-related 10 OS=Arabidopsis thaliana GN=At3g11740
PE=2 SV=2
Length = 194
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 48/100 (48%), Gaps = 1/100 (1%)
Query: 12 LVFTLKEPPNSSCLVRNSSIRISTETTARSNNFEVKGYFPDKYCII-VDPSGNIVAQIGV 70
L++TLK + I ++ + +F VKG + D+ C++ S IVAQ+
Sbjct: 91 LLYTLKRSSMIQIMKPKLDIFLAHNKEMKICDFHVKGSWIDRSCVVYAGKSDAIVAQMHK 150
Query: 71 KKEIEDLMESKDLYHIVVKPGIDQAFIAVVIATLDYIYGE 110
K + ++ K + + V P +D AFI +I LD I E
Sbjct: 151 KHTAQSILIGKSNFSVTVYPNVDFAFIVSLIVILDDINRE 190
>sp|Q9LZX1|LOR15_ARATH Protein LURP-one-related 15 OS=Arabidopsis thaliana GN=At5g01750
PE=1 SV=1
Length = 217
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 39/69 (56%), Gaps = 1/69 (1%)
Query: 43 NFEVKGYFPDKYCII-VDPSGNIVAQIGVKKEIEDLMESKDLYHIVVKPGIDQAFIAVVI 101
+F VKG + ++ C++ S IVAQ+ K ++ + KD + + V P +D AFIA ++
Sbjct: 145 DFRVKGSWLERSCVVYAGESDAIVAQMHRKHTVQSVFLGKDNFSVTVYPNVDYAFIASLV 204
Query: 102 ATLDYIYGE 110
LD + E
Sbjct: 205 VILDDVNRE 213
>sp|Q9LVZ8|LOR12_ARATH Protein LURP-one-related 12 OS=Arabidopsis thaliana GN=At3g15810
PE=2 SV=1
Length = 220
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 45/91 (49%), Gaps = 6/91 (6%)
Query: 26 VRNSSI--RISTETTARSNNFE---VKGYFPDKYCIIVDPSGNIVAQIGVKKEIE-DLME 79
VR SSI R + E E + G F + C+I D VA+I K + ++M
Sbjct: 114 VRRSSIIGRCTMEVEVYDGTGEEYIIDGDFSQRSCLIYDTKKCTVAEIKRKVDASTNVML 173
Query: 80 SKDLYHIVVKPGIDQAFIAVVIATLDYIYGE 110
+D++ + +KPG D AF ++ LD I G+
Sbjct: 174 GRDVFTLEIKPGFDGAFAMGLVVVLDQINGD 204
>sp|Q9SH27|LOR4_ARATH Protein LURP-one-related 4 OS=Arabidopsis thaliana GN=At1g63410
PE=3 SV=1
Length = 215
Score = 36.6 bits (83), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 25/98 (25%), Positives = 42/98 (42%), Gaps = 2/98 (2%)
Query: 14 FTLKEPPNSSCLVRNSSIRISTETTARSNN--FEVKGYFPDKYCIIVDPSGNIVAQIGVK 71
FT E ++ SSIR N F + + P I+D GNI+AQ+ K
Sbjct: 92 FTSTEEVKPCARIKRSSIRDGDWEVRDETNEVFWILRFDPKFAFQIIDIHGNIIAQVKPK 151
Query: 72 KEIEDLMESKDLYHIVVKPGIDQAFIAVVIATLDYIYG 109
+ + +D+ + VKP +D + + ++ I G
Sbjct: 152 QSSNGITLGEDVLTLEVKPRVDHSLVVTLVTVYGLIKG 189
>sp|Q9ZQR8|LURP1_ARATH Protein LURP1 OS=Arabidopsis thaliana GN=LURP1 PE=2 SV=1
Length = 207
Score = 35.8 bits (81), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
Query: 43 NFEVKGYFPDKYCII-VDPSGNIVAQIGVKKEIEDLMESKDLYHIVVKPGIDQAFIAVVI 101
+F+VKG + D C++ S I+A + K+ + KD + + V +D AFIA +I
Sbjct: 125 DFKVKGAWLDDSCVVYAGDSDTIIAHMCGKQTMRGFFFGKDHFSVTVDKNVDYAFIASLI 184
Query: 102 ATL 104
L
Sbjct: 185 VIL 187
>sp|Q9LQ36|LOR1_ARATH Protein LURP-one-related 1 OS=Arabidopsis thaliana GN=At1g33840
PE=2 SV=2
Length = 224
Score = 34.7 bits (78), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 23/94 (24%), Positives = 48/94 (51%), Gaps = 2/94 (2%)
Query: 12 LVFTLKEPPNSSCLVRNSSIRISTETTARSNNFEVKGYFPDKYCII-VDPSGNIVAQIGV 70
L++T+K N + + ++ + ++ ++G + + C + S I+AQ+
Sbjct: 115 LLYTVKRS-NMVQITTKLDVFLADNIEQKKCDYRLEGVWLETSCFVYAGDSDIILAQMRE 173
Query: 71 KKEIEDLMESKDLYHIVVKPGIDQAFIAVVIATL 104
KK ++ ++ KD + + V P +D AFIA +I L
Sbjct: 174 KKTMQSVLFGKDNFCLTVNPNVDYAFIASLIVIL 207
>sp|A2BUN7|LEUC_PROM5 3-isopropylmalate dehydratase large subunit OS=Prochlorococcus
marinus (strain MIT 9515) GN=leuC PE=3 SV=1
Length = 469
Score = 33.9 bits (76), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 34/68 (50%), Gaps = 4/68 (5%)
Query: 14 FTLKEPPNSSCLVRNSSIRISTETTARSNNFEVKGY--FPDKYCIIVDPSGNIVAQIGVK 71
F +EP S CL NS I + +A S+N KG P +++ P+ +VA +K
Sbjct: 400 FQWREPGCSMCLAMNSDKLIGNQVSASSSNRNFKGRQGSPSGRTLLMSPA--MVAAAAIK 457
Query: 72 KEIEDLME 79
++ D+ +
Sbjct: 458 GKVSDVRD 465
>sp|A8G2R6|LEUC_PROM2 3-isopropylmalate dehydratase large subunit OS=Prochlorococcus
marinus (strain MIT 9215) GN=leuC PE=3 SV=1
Length = 468
Score = 33.1 bits (74), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 33/68 (48%), Gaps = 4/68 (5%)
Query: 14 FTLKEPPNSSCLVRNSSIRISTETTARSNNFEVKGY--FPDKYCIIVDPSGNIVAQIGVK 71
F +EP S CL NS I + +A S+N KG P +++ P+ +VA +
Sbjct: 400 FQWREPGCSMCLAMNSDKLIGNQVSASSSNRNFKGRQGSPSGRTLLMSPA--MVAAAAIN 457
Query: 72 KEIEDLME 79
++ D+ E
Sbjct: 458 GKVSDVRE 465
>sp|A2BP55|LEUC_PROMS 3-isopropylmalate dehydratase large subunit OS=Prochlorococcus
marinus (strain AS9601) GN=leuC PE=3 SV=1
Length = 468
Score = 32.7 bits (73), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 33/68 (48%), Gaps = 4/68 (5%)
Query: 14 FTLKEPPNSSCLVRNSSIRISTETTARSNNFEVKGY--FPDKYCIIVDPSGNIVAQIGVK 71
F +EP S CL NS I + +A S+N KG P +++ P+ +VA +
Sbjct: 400 FQWREPGCSMCLAMNSDKLIGNQVSASSSNRNFKGRQGSPSGRTLLMSPA--MVAAAAIN 457
Query: 72 KEIEDLME 79
++ D+ E
Sbjct: 458 GKVSDVRE 465
>sp|Q5JH14|Y1410_PYRKO UPF0095 protein TK1410 OS=Pyrococcus kodakaraensis (strain ATCC
BAA-918 / JCM 12380 / KOD1) GN=TK1410 PE=3 SV=1
Length = 464
Score = 32.3 bits (72), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 38/76 (50%), Gaps = 6/76 (7%)
Query: 52 DKYCIIVDPSGNIVAQIGVKKEIEDLMESKDLYHIVVKPGIDQAFIAVVIAT-LDYIYGE 110
D +++D + N++A+I V++ L E KD+Y +V I Q I V + + YI G
Sbjct: 386 DGIALLLDENKNVIAEIPVRELTNQLKERKDVYAVVFNGVITQRLIDTVSESGVKYIVGA 445
Query: 111 YT-----RCWSIRIFT 121
R S++I T
Sbjct: 446 RKYNVVRRPVSLKIIT 461
>sp|Q7V336|LEUC_PROMP 3-isopropylmalate dehydratase large subunit OS=Prochlorococcus
marinus subsp. pastoris (strain CCMP1986 / MED4) GN=leuC
PE=3 SV=1
Length = 469
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 35/71 (49%), Gaps = 4/71 (5%)
Query: 11 KLVFTLKEPPNSSCLVRNSSIRISTETTARSNNFEVKGY--FPDKYCIIVDPSGNIVAQI 68
K F +EP S CL NS I + +A S+N KG P+ +++ P+ +VA
Sbjct: 397 KAGFQWREPGCSMCLAMNSDKLIGNQVSASSSNRNFKGRQGSPNGRTLLMSPA--MVAAA 454
Query: 69 GVKKEIEDLME 79
+ ++ D+ +
Sbjct: 455 SITGKVSDVRD 465
>sp|Q31CS6|LEUC_PROM9 3-isopropylmalate dehydratase large subunit OS=Prochlorococcus
marinus (strain MIT 9312) GN=leuC PE=3 SV=1
Length = 469
Score = 32.0 bits (71), Expect = 1.0, Method: Composition-based stats.
Identities = 20/68 (29%), Positives = 33/68 (48%), Gaps = 4/68 (5%)
Query: 14 FTLKEPPNSSCLVRNSSIRISTETTARSNNFEVKGY--FPDKYCIIVDPSGNIVAQIGVK 71
F +EP S CL NS I + +A S+N KG P +++ P+ +VA +
Sbjct: 400 FQWREPGCSMCLAMNSDKLIGNQVSASSSNRNFKGRQGSPSGRTLLMSPA--MVAAAAIN 457
Query: 72 KEIEDLME 79
++ D+ E
Sbjct: 458 GKVSDVRE 465
>sp|A3PAX7|LEUC_PROM0 3-isopropylmalate dehydratase large subunit OS=Prochlorococcus
marinus (strain MIT 9301) GN=leuC PE=3 SV=1
Length = 467
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 33/66 (50%), Gaps = 4/66 (6%)
Query: 14 FTLKEPPNSSCLVRNSSIRISTETTARSNNFEVKGY--FPDKYCIIVDPSGNIVAQIGVK 71
F +EP S CL NS I + +A S+N KG P+ +++ P+ +VA +
Sbjct: 400 FQWREPGCSMCLAMNSDKLIGNQLSASSSNRNFKGRQGSPNGRTLLMSPA--MVAAAAIS 457
Query: 72 KEIEDL 77
++ D+
Sbjct: 458 GKVTDI 463
>sp|A0MFL4|LOR17_ARATH Protein LURP-one-related 17 OS=Arabidopsis thaliana GN=At5g41590
PE=2 SV=2
Length = 221
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 35/71 (49%), Gaps = 2/71 (2%)
Query: 40 RSNNFEVKGYFPDKYCIIVD-PSGNIVAQIGVKK-EIEDLMESKDLYHIVVKPGIDQAFI 97
+ N++ +KG + K C IV P V +I K+ + + D++ +VV PG D
Sbjct: 150 KKNSYIIKGSYRCKSCKIVHVPLNKTVVEIKRKEVRTKGVRFGSDVFDLVVNPGFDTGLA 209
Query: 98 AVVIATLDYIY 108
++ LD ++
Sbjct: 210 MALVLLLDQMF 220
>sp|Q84WW5|VAP13_ARATH Vesicle-associated protein 1-3 OS=Arabidopsis thaliana GN=PVA13
PE=2 SV=1
Length = 239
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 42/83 (50%), Gaps = 14/83 (16%)
Query: 11 KLVFTLKEPPNSSCLVRNSSIRISTETTARSNNFEVKGYFPDKYCI-----IVDP--SGN 63
K F LK+ SSC S++++ +TT + F+VK P KYC+ +V P S N
Sbjct: 15 KFPFELKK--QSSC-----SMQLTNKTTTQCVAFKVKTTNPRKYCVRPNTGVVLPGDSCN 67
Query: 64 IVAQIGVKKEIEDLMESKDLYHI 86
+ + +KE M+ KD + +
Sbjct: 68 VTVTMQAQKEAPLDMQCKDKFLV 90
>sp|Q9LSQ1|LOR13_ARATH Protein LURP-one-related 13 OS=Arabidopsis thaliana GN=At3g16900
PE=3 SV=1
Length = 185
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 38/96 (39%), Gaps = 10/96 (10%)
Query: 13 VFTLKEPPNSSCLVRNSSIRISTETTARSNNFEVKGYFPDKYCII-VDPSGNIVAQIGVK 71
+FT+K R +T S +F +KG F + C I V S I+AQ+
Sbjct: 93 IFTVKRSSTVQLKTRVEVFLKHNQTRESSCDFTIKGRFMKRACTIYVADSTKIIAQV--- 149
Query: 72 KEIEDLMESKDLYHIVVKPGIDQAFIAVVIATLDYI 107
E + + P +D AFI +I D I
Sbjct: 150 ------YEGHERLVATIYPNVDYAFIVTLIFIFDLI 179
>sp|P40976|LYS2_SCHPO L-aminoadipate-semialdehyde dehydrogenase OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=lys1 PE=1 SV=3
Length = 1419
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 32/55 (58%), Gaps = 4/55 (7%)
Query: 50 FPDKYCIIVDPSGNIVAQIG--VKKEIEDLMESKDLYHIVVKPGIDQAFIAVVIA 102
FPD+ CI+V PS I A + ++I++ S L H +VK GI++ + +V A
Sbjct: 292 FPDRECIVVTPSVTIDAPVTSYTYRQIDE--SSNILAHHLVKNGIERGDVVMVYA 344
>sp|Q9RS67|FTSY_DEIRA Signal recognition particle receptor FtsY OS=Deinococcus
radiodurans (strain ATCC 13939 / DSM 20539 / JCM 16871 /
LMG 4051 / NBRC 15346 / NCIMB 9279 / R1 / VKM B-1422)
GN=ftsY PE=3 SV=1
Length = 317
Score = 30.4 bits (67), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
Query: 22 SSCLVRNSSIRISTETTARSNNFEVKGYFPDKYCIIVDPSGNIVAQIGV 70
L+R ++ + E AR F G+ PD VDP G++V IGV
Sbjct: 72 QDALMR--ALTLQLEPNARRAQFRELGFSPDVSRSKVDPKGHVVMVIGV 118
>sp|F1CKI8|3CAR2_PICSI Carene synthase 2, chloroplastic OS=Picea sitchensis GN=TPS-3car2
PE=1 SV=1
Length = 627
Score = 29.6 bits (65), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 13/48 (27%), Positives = 27/48 (56%)
Query: 65 VAQIGVKKEIEDLMESKDLYHIVVKPGIDQAFIAVVIATLDYIYGEYT 112
+A G+ ++DL++ + V + GID+ F + +LDY+Y ++
Sbjct: 111 MADGGLMSPVDDLLQHLSMVDNVERLGIDRHFQTEIKVSLDYVYSYWS 158
>sp|F1CKI9|3CAR3_PICSI Carene synthase 3, chloroplastic OS=Picea sitchensis GN=TPS-3car3
PE=1 SV=1
Length = 627
Score = 29.6 bits (65), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 13/48 (27%), Positives = 27/48 (56%)
Query: 65 VAQIGVKKEIEDLMESKDLYHIVVKPGIDQAFIAVVIATLDYIYGEYT 112
+A G+ ++DL++ + V + GID+ F + +LDY+Y ++
Sbjct: 111 MAAGGLMSPVDDLLQHLSMVDNVERLGIDRHFQTEIKVSLDYVYSYWS 158
>sp|F1CKJ1|SSS_PICSI (+)-sabinene synthase, chloroplastic OS=Picea sitchensis GN=TPS-sab
PE=1 SV=1
Length = 627
Score = 29.6 bits (65), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 13/48 (27%), Positives = 27/48 (56%)
Query: 65 VAQIGVKKEIEDLMESKDLYHIVVKPGIDQAFIAVVIATLDYIYGEYT 112
+A G+ ++DL++ + V + GID+ F + +LDY+Y ++
Sbjct: 111 MAAGGLMSPVDDLLQHLSMVDNVERLGIDRHFQTEIKVSLDYVYSYWS 158
>sp|P68875|S230_PLAFO Transmission-blocking target antigen S230 OS=Plasmodium falciparum
(isolate NF54) GN=S230 PE=1 SV=1
Length = 3135
Score = 29.3 bits (64), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 33/127 (25%), Positives = 52/127 (40%), Gaps = 22/127 (17%)
Query: 5 DYERSKKLVFTL----KEPPNSSCLVRNSSIRISTETTARSNNFEVKGYFP-------DK 53
DYE+++ L+ TL K+ S C + ++ + T + NF K YFP DK
Sbjct: 2453 DYEKNESLISTLPNDTKKIQKSICKINAKALDVVTIKCPHTKNFTPKDYFPNSSLITNDK 2512
Query: 54 YCIIVDPSGNIVAQIGVKKEIEDLMESKDLYHIVVKPGIDQAFIAVVIATLDYIYGEYTR 113
+I N V I K+ L KD+Y Q+F V + L+ I +
Sbjct: 2513 KIVITFDKKNFVTYIDPTKKTFSL---KDIYI--------QSFYGVSLDHLNQIKKIHEE 2561
Query: 114 CWSIRIF 120
+ +F
Sbjct: 2562 WDDVHLF 2568
>sp|P68874|S230_PLAF7 Transmission-blocking target antigen S230 OS=Plasmodium falciparum
(isolate 3D7) GN=S230 PE=2 SV=1
Length = 3135
Score = 29.3 bits (64), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 33/127 (25%), Positives = 52/127 (40%), Gaps = 22/127 (17%)
Query: 5 DYERSKKLVFTL----KEPPNSSCLVRNSSIRISTETTARSNNFEVKGYFP-------DK 53
DYE+++ L+ TL K+ S C + ++ + T + NF K YFP DK
Sbjct: 2453 DYEKNESLISTLPNDTKKIQKSICKINAKALDVVTIKCPHTKNFTPKDYFPNSSLITNDK 2512
Query: 54 YCIIVDPSGNIVAQIGVKKEIEDLMESKDLYHIVVKPGIDQAFIAVVIATLDYIYGEYTR 113
+I N V I K+ L KD+Y Q+F V + L+ I +
Sbjct: 2513 KIVITFDKKNFVTYIDPTKKTFSL---KDIYI--------QSFYGVSLDHLNQIKKIHEE 2561
Query: 114 CWSIRIF 120
+ +F
Sbjct: 2562 WDDVHLF 2568
>sp|Q89AH3|RNE_BUCBP Putative truncated ribonuclease E OS=Buchnera aphidicola subsp.
Baizongia pistaciae (strain Bp) GN=rne PE=3 SV=1
Length = 410
Score = 29.3 bits (64), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 38/79 (48%), Gaps = 10/79 (12%)
Query: 10 KKLVFTLKEPPNSSCLVRNSSIRISTETTARSNNFEVKGYFPDKY--------CIIVDPS 61
KK++ L P N ++R S + S ET NF VK ++ K C+I S
Sbjct: 152 KKIISMLMVPENMGIIIRTSGVGRSIETLQLDLNFRVKNWYTIKKSAEINTAPCLIHKES 211
Query: 62 GNIVAQIG--VKKEIEDLM 78
++ + +KK+I++++
Sbjct: 212 NIVIRTLRDYLKKDIQEII 230
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.138 0.409
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 44,556,947
Number of Sequences: 539616
Number of extensions: 1629636
Number of successful extensions: 4092
Number of sequences better than 100.0: 42
Number of HSP's better than 100.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 25
Number of HSP's that attempted gapping in prelim test: 4069
Number of HSP's gapped (non-prelim): 42
length of query: 122
length of database: 191,569,459
effective HSP length: 89
effective length of query: 33
effective length of database: 143,543,635
effective search space: 4736939955
effective search space used: 4736939955
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)