Query 038196
Match_columns 122
No_of_seqs 104 out of 264
Neff 5.9
Searched_HMMs 29240
Date Mon Mar 25 14:30:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038196.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/038196hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1zxu_A AT5G01750 protein; PFAM 99.9 8.6E-24 3E-28 161.0 10.1 108 2-112 105-215 (217)
2 1zxu_A AT5G01750 protein; PFAM 89.3 1.9 6.4E-05 31.8 7.9 58 9-71 35-94 (217)
3 2fim_A Tubby related protein 1 80.2 12 0.0004 29.2 8.8 80 8-93 65-163 (276)
4 3c5n_A Tubby-related protein 1 77.1 18 0.00062 27.6 8.9 78 10-93 43-139 (246)
5 2v2f_A Penicillin binding prot 56.5 6.6 0.00023 19.4 1.8 17 53-69 5-21 (26)
6 3u88_M Histone-lysine N-methyl 50.5 9.5 0.00033 23.9 2.1 17 86-102 28-44 (75)
7 1yx4_A 26S proteasome non-ATPa 21.9 32 0.0011 24.2 1.2 24 84-107 30-53 (132)
8 4aay_A AROA; oxidoreductase, r 21.8 42 0.0014 29.7 2.1 22 83-104 300-321 (845)
9 1ti6_A Pyrogallol hydroxytrans 21.2 41 0.0014 29.4 2.0 22 83-104 261-282 (875)
10 3ml1_A NAPA, periplasmic nitra 20.8 52 0.0018 28.7 2.5 21 84-104 228-248 (802)
No 1
>1zxu_A AT5G01750 protein; PFAM PF01167, TULP, structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG; 1.70A {Arabidopsis thaliana} SCOP: d.23.1.2 PDB: 2q4m_A
Probab=99.90 E-value=8.6e-24 Score=160.97 Aligned_cols=108 Identities=24% Similarity=0.434 Sum_probs=79.4
Q ss_pred CcCCcCCCCeeEEEEEcCCCcccccccceEEEEEcCC--CCcceEEEEeecCCceeEEEcCC-CCeEEEEeeecccceee
Q 038196 2 YAFDYERSKKLVFTLKEPPNSSCLVRNSSIRISTETT--ARSNNFEVKGYFPDKYCIIVDPS-GNIVAQIGVKKEIEDLM 78 (122)
Q Consensus 2 y~~d~~~~~~~lFtvkrs~~~~i~~~k~~~~V~~~~~--~~~~~~~i~G~~~~rsc~I~~~~-g~vVAev~rK~~~~~v~ 78 (122)
|.+++.++++|+|++|+++ +++.++.++|+++++ ++.++|+|+|+|.+++|+|++++ |++||+|+||+++++++
T Consensus 105 ~~~~~~~~~~~i~~vrk~~---~~~~~~~~~V~~~~~~~~~~~~~~I~G~~~~~~f~I~~~~~~~~Va~I~kk~~~~~~~ 181 (217)
T 1zxu_A 105 FRGGSTDQRDLLYTVKRSS---MLQLKTKLDVFLGHNKDEKRCDFRVKGSWLERSCVVYAGESDAIVAQMHRKHTVQSVF 181 (217)
T ss_dssp EETTCCCGGGEEEEEEC----------CCEEEEETTCCC-CCCSEEEESCTTTTCCEEEETTTCCEEEEEEEC-------
T ss_pred EcCCCCCCCcEEEEEEEec---cccCCCeEEEEECCCCCCCceEEEEEEeEeCCEEEEEECCCCEEEEEEEeeeeccccc
Confidence 3444444457999999875 355677899999875 35689999999999999999976 79999999999889999
Q ss_pred eeeeeEEEEEeCCCcHHHHHHHHHhhchhcCCCc
Q 038196 79 ESKDLYHIVVKPGIDQAFIAVVIATLDYIYGEYT 112 (122)
Q Consensus 79 ~G~dvf~v~V~PgvD~AfimaLvvilD~i~~~~~ 112 (122)
+|+|+|.|+|.||+|++|||||++++|+|+++..
T Consensus 182 ~~~D~y~l~V~p~~D~aliialvv~iD~~~~~~~ 215 (217)
T 1zxu_A 182 LGKDNFSVTVYPNVDYAFIASLVVILDDVNREDR 215 (217)
T ss_dssp -CBCSEEEEECTTSBHHHHHHHHHHHHHHHC---
T ss_pred cCCcEEEEEECCCCCHHHHHHHHHHHHHhhhhcc
Confidence 9999999999999999999999999999998864
No 2
>1zxu_A AT5G01750 protein; PFAM PF01167, TULP, structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG; 1.70A {Arabidopsis thaliana} SCOP: d.23.1.2 PDB: 2q4m_A
Probab=89.30 E-value=1.9 Score=31.77 Aligned_cols=58 Identities=17% Similarity=0.166 Sum_probs=38.5
Q ss_pred CCeeEEEEEcCCCcccccccceEEEEEcCCCCcceEEEEeecC--CceeEEEcCCCCeEEEEeee
Q 038196 9 SKKLVFTLKEPPNSSCLVRNSSIRISTETTARSNNFEVKGYFP--DKYCIIVDPSGNIVAQIGVK 71 (122)
Q Consensus 9 ~~~~lFtvkrs~~~~i~~~k~~~~V~~~~~~~~~~~~i~G~~~--~rsc~I~~~~g~vVAev~rK 71 (122)
+....|+||+..+ .+. ....+|+-+. ....|+++|.+. .....|+|.+|+.|.+|+||
T Consensus 35 ~~~~~l~vkqk~~--~~~-~~~f~V~D~~--G~~vf~V~~~~~~~~~~~~l~D~~G~~l~~i~rk 94 (217)
T 1zxu_A 35 PYPIDMAIVRKMM--SLT-DGNFVITDVN--GNLLFKVKEPVFGLHDKRVLLDGSGTPVVTLREK 94 (217)
T ss_dssp SSCEEEEEECC--------CCCEEEEETT--SCEEEEEECSSTTCCSEEEEECTTSCEEEEEEC-
T ss_pred CCCcEEEEEEEEe--Eee-CCCEEEEeCC--CCEEEEEEccccCCCCEEEEECCCCCEEEEEEcc
Confidence 4566788886553 122 2357887544 467899999864 34567889889999999998
No 3
>2fim_A Tubby related protein 1; tubby filled-barrel, beta-barrel, filled-beta-roll, 12-stran barrel, helix-filled-barrel, retinitis pigmentosa; HET: 3DP; 1.90A {Homo sapiens} PDB: 1s31_A*
Probab=80.19 E-value=12 Score=29.21 Aligned_cols=80 Identities=13% Similarity=0.266 Sum_probs=45.0
Q ss_pred CCCeeEEEEEcCCCcccccccceEEEEEcCCC---CcceE--EEEeecCCceeEEEcCC--------------CCeEEEE
Q 038196 8 RSKKLVFTLKEPPNSSCLVRNSSIRISTETTA---RSNNF--EVKGYFPDKYCIIVDPS--------------GNIVAQI 68 (122)
Q Consensus 8 ~~~~~lFtvkrs~~~~i~~~k~~~~V~~~~~~---~~~~~--~i~G~~~~rsc~I~~~~--------------g~vVAev 68 (122)
+.++.|+..||.. -+..+..-|++..++ ....| +++.++.+..++|||.. ..-+|.|
T Consensus 65 ~~~~fLLaarK~k----~~~ts~YiIS~d~~dlsr~s~~yvGKLrSNflGtkF~iyD~G~~p~~~~s~~~~~~r~el~~V 140 (276)
T 2fim_A 65 EKKVFLLAGRKRK----RSKTANYLISIDPTNLSRGGENFIGKLRSNLLGNRFTVFDNGQNPQRGYSTNVASLRQELAAV 140 (276)
T ss_dssp SSCEEEEEEEECT----TCSSCEEEEESCTTC------CEEEEEEECSSSSEEEEECSSBCGGGCTTSCGGGBCCEEEEE
T ss_pred CCCEEEEEEEecc----CCCCceEEEEecchhcccCCceEEEEEEEccCCCEEEEECCCCCcccccCcccccccEEEEEE
Confidence 3456788887764 222344555554331 22344 78999999999999841 1678888
Q ss_pred eeecccceeeeeeeeEEEEEeCCCc
Q 038196 69 GVKKEIEDLMESKDLYHIVVKPGID 93 (122)
Q Consensus 69 ~rK~~~~~v~~G~dvf~v~V~PgvD 93 (122)
.-+.+..+. -|.-.+.+.+ |+.+
T Consensus 141 ~Ye~nvlg~-~gPR~m~v~i-P~~~ 163 (276)
T 2fim_A 141 IYETNVLGF-RGPRRMTVII-PGMS 163 (276)
T ss_dssp EEC----------CCEEEEE-ECBC
T ss_pred EEEecccCC-CCCeEEEEEe-cCcc
Confidence 776444322 2566777777 6653
No 4
>3c5n_A Tubby-related protein 1; inositol, signalling, alternative splicing, disease mutation, polymorphism, retinitis pigmentosa, sensory transduction; HET: I3P; 1.80A {Homo sapiens} PDB: 1i7e_A* 1c8z_A
Probab=77.09 E-value=18 Score=27.58 Aligned_cols=78 Identities=13% Similarity=0.271 Sum_probs=46.4
Q ss_pred CeeEEEEEcCCCcccccccceEEEEEcCCC---CcceE--EEEeecCCceeEEEcCC--------------CCeEEEEee
Q 038196 10 KKLVFTLKEPPNSSCLVRNSSIRISTETTA---RSNNF--EVKGYFPDKYCIIVDPS--------------GNIVAQIGV 70 (122)
Q Consensus 10 ~~~lFtvkrs~~~~i~~~k~~~~V~~~~~~---~~~~~--~i~G~~~~rsc~I~~~~--------------g~vVAev~r 70 (122)
+..|...||.. -+..+..-|.+..++ ....| +++.++.+..++|||.. ..-+|.|.-
T Consensus 43 ~~fLlaark~~----~~~~s~YiIS~d~~dlsr~s~~yvGKLrsNf~Gt~F~iyD~g~~p~~~~s~~~~~~r~el~~v~Y 118 (246)
T 3c5n_A 43 KVFLLAGRKRK----RSKTANYLISIDPTNLSRGGENFIGKLRSNLLGNRFTVFDNGQNPQRGYSTNVASLRQELAAVIY 118 (246)
T ss_dssp CCEEEEEEECT----TCSSCEEEEESCTTC------CEEEEEEECSSSSEEEEECSCBCGGGCTTSCGGGBCCEEEEEEE
T ss_pred cEEEEeeeecc----CCCCceEEEEeCccccccCCceEEEEEEEccCCCEEEEECCCCCcccccCcccccccEEEEEEEE
Confidence 44677887654 122334555554431 22334 78999999999999841 167888877
Q ss_pred ecccceeeeeeeeEEEEEeCCCc
Q 038196 71 KKEIEDLMESKDLYHIVVKPGID 93 (122)
Q Consensus 71 K~~~~~v~~G~dvf~v~V~PgvD 93 (122)
+.+..+. -|.-.+.+.+ |+.+
T Consensus 119 e~n~l~~-~gPR~m~v~i-P~~~ 139 (246)
T 3c5n_A 119 ETNVLGF-RGPRRMTVII-PGMS 139 (246)
T ss_dssp CCCCCC----CCCEEEEE-ECBC
T ss_pred EecccCC-CCCeEEEEEe-cCcc
Confidence 7554332 3566777777 6653
No 5
>2v2f_A Penicillin binding protein 1A; transpeptidase activity, peptidoglycan synthesis, transferase, hydrolase; HET: MES; 1.9A {Streptococcus pneumoniae} PDB: 2zc5_A* 2zc6_A*
Probab=56.51 E-value=6.6 Score=19.40 Aligned_cols=17 Identities=24% Similarity=0.446 Sum_probs=14.1
Q ss_pred ceeEEEcCCCCeEEEEe
Q 038196 53 KYCIIVDPSGNIVAQIG 69 (122)
Q Consensus 53 rsc~I~~~~g~vVAev~ 69 (122)
.+-.|||.+|++|+++.
T Consensus 5 ~ss~IYD~~g~~i~~lg 21 (26)
T 2v2f_A 5 TSSKIYDNKNQLIADLG 21 (26)
T ss_pred CCCEEEeCCCCEeeecc
Confidence 45689998899999984
No 6
>3u88_M Histone-lysine N-methyltransferase MLL; menin, MEN1, MLL, JUND, ledgf, TPR, transcription; HET: CHD 0BR GGB; 3.00A {Homo sapiens}
Probab=50.46 E-value=9.5 Score=23.94 Aligned_cols=17 Identities=29% Similarity=0.450 Sum_probs=13.6
Q ss_pred EEEeCCCcHHHHHHHHH
Q 038196 86 IVVKPGIDQAFIAVVIA 102 (122)
Q Consensus 86 v~V~PgvD~AfimaLvv 102 (122)
|-|.||+|.||-+.-+|
T Consensus 28 lgvgpGFDAALqvSa~I 44 (75)
T 3u88_M 28 LRVGPGFDAALQVSAAI 44 (75)
T ss_dssp CEECCCCCHHHHHHHHH
T ss_pred HccCcChhHHHHHHHHH
Confidence 35899999999876554
No 7
>1yx4_A 26S proteasome non-ATPase regulatory subunit 4; polyubiquitin, UIM, hydrolase; NMR {Homo sapiens} PDB: 1yx5_A 1yx6_A 2kde_A 2kdf_A
Probab=21.95 E-value=32 Score=24.18 Aligned_cols=24 Identities=13% Similarity=0.290 Sum_probs=19.9
Q ss_pred EEEEEeCCCcHHHHHHHHHhhchh
Q 038196 84 YHIVVKPGIDQAFIAVVIATLDYI 107 (122)
Q Consensus 84 f~v~V~PgvD~AfimaLvvilD~i 107 (122)
|-.-|-|++|+-|+|||=+-|.|-
T Consensus 30 fefgvDp~~DPeLa~ALr~Smeee 53 (132)
T 1yx4_A 30 FEFGVDPSADPELALALRVSMEEQ 53 (132)
T ss_dssp CCSCSCGGGCHHHHHHHHHHHHHH
T ss_pred cccCCCCCcCHHHHHHHHHhHHHH
Confidence 555689999999999999887664
No 8
>4aay_A AROA; oxidoreductase, rieske, iron sulfur, molybdopterin; HET: MGD; 2.70A {Rhizobium species}
Probab=21.82 E-value=42 Score=29.65 Aligned_cols=22 Identities=18% Similarity=0.510 Sum_probs=19.2
Q ss_pred eEEEEEeCCCcHHHHHHHHHhh
Q 038196 83 LYHIVVKPGIDQAFIAVVIATL 104 (122)
Q Consensus 83 vf~v~V~PgvD~AfimaLvvil 104 (122)
...|-|.||-|.||++||+=++
T Consensus 300 ~~~l~irPGTD~AL~~a~~~~i 321 (845)
T 4aay_A 300 VLHLAINSGTDLALFNALFTYI 321 (845)
T ss_dssp EEEECCCTTCHHHHHHHHHHHH
T ss_pred ceEEeecCCcHHHHHHHHHHHH
Confidence 4789999999999999998554
No 9
>1ti6_A Pyrogallol hydroxytransferase large subunit; molybdenum binding enzyme, MGD-cofactors, DMSO-reductase family, 4Fe-4S-cluster; HET: MGD BTT; 2.00A {Pelobacter acidigallici} SCOP: b.52.2.2 c.81.1.1 PDB: 1ti2_A* 1ti4_A* 1vld_M* 1vle_M* 1vlf_M*
Probab=21.16 E-value=41 Score=29.40 Aligned_cols=22 Identities=23% Similarity=0.095 Sum_probs=18.9
Q ss_pred eEEEEEeCCCcHHHHHHHHHhh
Q 038196 83 LYHIVVKPGIDQAFIAVVIATL 104 (122)
Q Consensus 83 vf~v~V~PgvD~AfimaLvvil 104 (122)
...|-|.||-|.||++||+=++
T Consensus 261 d~~l~irPGTD~aL~~am~~~i 282 (875)
T 1ti6_A 261 DKWFSPKIGTDHALSFAIAYTW 282 (875)
T ss_dssp SEEECCCTTCHHHHHHHHHHHH
T ss_pred CEEeccCCCcHHHHHHHHHHHH
Confidence 5678999999999999998554
No 10
>3ml1_A NAPA, periplasmic nitrate reductase; heterodimer, oxidoreductase; HET: MGD HEC; 1.60A {Ralstonia eutropha} PDB: 3o5a_A* 1ogy_A* 2nya_A*
Probab=20.85 E-value=52 Score=28.71 Aligned_cols=21 Identities=24% Similarity=0.409 Sum_probs=18.5
Q ss_pred EEEEEeCCCcHHHHHHHHHhh
Q 038196 84 YHIVVKPGIDQAFIAVVIATL 104 (122)
Q Consensus 84 f~v~V~PgvD~AfimaLvvil 104 (122)
..|-|.||-|.||++||+=++
T Consensus 228 ~~l~irPGtD~aL~~~m~~~i 248 (802)
T 3ml1_A 228 IGIIFKPQTDLAMLNYIANYI 248 (802)
T ss_dssp EEEECCTTTHHHHHHHHHHHH
T ss_pred cEeccCCCHHHHHHHHHHHHH
Confidence 479999999999999998655
Done!