BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 038197
         (366 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q9S7C9|ESCA_ARATH Putative DNA-binding protein ESCAROLA OS=Arabidopsis thaliana
           GN=ESC PE=2 SV=1
          Length = 311

 Score = 69.3 bits (168), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 64/164 (39%), Positives = 91/164 (55%), Gaps = 15/164 (9%)

Query: 109 PEFSSSSSSKRGRGRPPGSGNWQLLASLGELFANTAGGDFTPHVVTVNTGEDVAGKILSF 168
           P  SSS+  KR RGRPPGS N    A    +    +      HV+ V+ G D+   + ++
Sbjct: 77  PNTSSSAPGKRPRGRPPGSKNK---AKPPIIVTRDSPNALRSHVLEVSPGADIVESVSTY 133

Query: 169 SQKGPRGICVLSANGAVSNVTIRQP---------GSSGGILTYEGRFEILSLSGSFTVTE 219
           +++  RG+ VL  NG VSNVT+RQP            GG++T  GRFEILSL+G+     
Sbjct: 134 ARRRGRGVSVLGGNGTVSNVTLRQPVTPGNGGGVSGGGGVVTLHGRFEILSLTGTVLPPP 193

Query: 220 TGGARSRTGGLSVSLAGPDGRVIGGGVAGLLMAASPIQIVVGSF 263
              A    GGLS+ LAG  G+V+GG V   L+A++P+ ++  SF
Sbjct: 194 ---APPGAGGLSIFLAGGQGQVVGGSVVAPLIASAPVILMAASF 234


>sp|A1BJF4|ATPG_CHLPD ATP synthase gamma chain OS=Chlorobium phaeobacteroides (strain DSM
           266) GN=atpG PE=3 SV=1
          Length = 291

 Score = 33.1 bits (74), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 20/50 (40%), Positives = 26/50 (52%), Gaps = 2/50 (4%)

Query: 9   SGSPGGDSYTDSPPPVSS-DVLLPQHMQPQAMNIDLGVGGAASGAATMAS 57
           SG  GG  Y   P P S  DVL+P+H+  Q   + L    AA  AA M++
Sbjct: 200 SGKDGGSDYIYEPSPESIIDVLVPKHLNTQVWRVMLE-SNAAEQAARMSA 248


>sp|P28818|RGRF1_RAT Ras-specific guanine nucleotide-releasing factor 1 OS=Rattus
           norvegicus GN=Rasgrf1 PE=1 SV=1
          Length = 1244

 Score = 32.3 bits (72), Expect = 6.0,   Method: Composition-based stats.
 Identities = 24/96 (25%), Positives = 37/96 (38%), Gaps = 3/96 (3%)

Query: 11  SPGGDSYTDSPPPVSSDVLLPQHMQPQAMNIDLGVGGAASGAATMASPPG---NSGSSVD 67
           SP       SPPP++     P   +  ++NI +  GG A   A++  P     N  S + 
Sbjct: 712 SPRASRKFSSPPPLAIGTSSPVRRRKLSLNIPIITGGKALELASLGCPSDGYTNIHSPIS 771

Query: 68  IFGKKKRGRPRKYDSDGNLRVPSVLSSSTSSPPPGF 103
            FGK      +   +    R P  +  +T     GF
Sbjct: 772 PFGKTTLDTSKLCVASSLTRTPEEIDMTTLEESSGF 807


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.308    0.128    0.368 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 152,740,287
Number of Sequences: 539616
Number of extensions: 7154610
Number of successful extensions: 22435
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 142
Number of HSP's that attempted gapping in prelim test: 22014
Number of HSP's gapped (non-prelim): 459
length of query: 366
length of database: 191,569,459
effective HSP length: 119
effective length of query: 247
effective length of database: 127,355,155
effective search space: 31456723285
effective search space used: 31456723285
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 62 (28.5 bits)