Query 038197
Match_columns 366
No_of_seqs 243 out of 602
Neff 4.1
Searched_HMMs 29240
Date Mon Mar 25 14:31:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038197.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/038197hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2hx0_A Putative DNA-binding pr 100.0 2.2E-27 7.4E-32 208.6 16.3 123 143-274 13-136 (154)
2 2p6y_A Hypothetical protein VC 99.9 2.4E-27 8E-32 205.7 15.6 119 147-274 1-120 (142)
3 2dt4_A Hypothetical protein PH 99.9 7.9E-28 2.7E-32 208.2 11.2 118 149-272 10-130 (143)
4 3htn_A Putative DNA binding pr 99.9 2.1E-27 7.2E-32 207.7 13.3 120 149-274 16-138 (149)
5 2h6l_A Hypothetical protein; N 99.9 2.8E-27 9.6E-32 205.4 11.0 120 149-275 10-132 (146)
6 3hwu_A Putative DNA-binding pr 99.9 1.2E-24 4.2E-29 189.6 13.9 120 149-274 13-135 (147)
7 2ezd_A High mobility group pro 96.6 0.00092 3.2E-08 42.9 2.2 16 116-131 3-18 (26)
8 4dyq_A Gene 1 protein; GP1, oc 70.1 1.3 4.4E-05 37.4 0.9 14 70-83 3-16 (140)
9 1xv2_A ALDC, hypothetical prot 41.1 94 0.0032 28.8 8.3 99 158-263 96-205 (237)
10 4i95_A Putative uncharacterize 24.1 58 0.002 28.4 3.5 34 175-210 37-70 (142)
11 1t3g_A X-linked interleukin-1 21.1 56 0.0019 27.8 2.8 27 155-181 51-77 (159)
No 1
>2hx0_A Putative DNA-binding protein; NESG, PSI-2, SCR59, structural genomics, protein structure initiative; 1.55A {Salmonella choleraesuis} SCOP: d.290.1.3 PDB: 2nmu_A
Probab=99.95 E-value=2.2e-27 Score=208.61 Aligned_cols=123 Identities=20% Similarity=0.386 Sum_probs=112.2
Q ss_pred cCCCCceeEEEEEcCCCCHHHHHHHHHhh-CCccEEEEEeeceeeeEEEecCCCCCCceeeeeceeEEEeeeceeecCCC
Q 038197 143 TAGGDFTPHVVTVNTGEDVAGKILSFSQK-GPRGICVLSANGAVSNVTIRQPGSSGGILTYEGRFEILSLSGSFTVTETG 221 (366)
Q Consensus 143 ~~g~~~~phVIrV~~GEDIvesI~~Faq~-~~ra~cILSAiGAVsnVTLrq~~~s~~~~t~eG~FEILSLSGnis~~~~g 221 (366)
+.+..+++|++||++||||+++|.+||++ +.+++||++++|+|++++|||++... +++|+|+|||+||+|+|++.
T Consensus 13 ~~~~~~r~~vlrL~~Gedl~~~i~~~~~~~gi~~a~v~s~iGsl~~~~l~~~~~~~-~~~~~g~~EIlsl~Gti~~~--- 88 (154)
T 2hx0_A 13 HNASTARFYALRLLPGQEVFSQLHAFVQQNQLRAAWIAGCTGSLTDVALRYAGQEA-TTSLTGTFEVISLNGTLELT--- 88 (154)
T ss_dssp CSCCCCEEEEEEECTTCBHHHHHHHHHHHHTCSSEEEEEEEEEEEEEEEECTTCSS-CEEEEEEEEEEEEEEEEETT---
T ss_pred CCCCCccEEEEEECCCCcHHHHHHHHHHHhCCCEEEEEEeEeeeEEeEEEccCCCc-cEecCCcEEEEEeeeeEeCC---
Confidence 55678999999999999999999999987 66688999999999999999999876 78999999999999999985
Q ss_pred CCCCCCCeeEEEEeCCCCcEEeeecCCccEEecceEEEEEEcCCCcccccccc
Q 038197 222 GARSRTGGLSVSLAGPDGRVIGGGVAGLLMAASPIQIVVGSFMPNGFKVHKRK 274 (366)
Q Consensus 222 g~~~~~~HLHVSLA~~dGqViGGHL~g~LIAasTVEVVV~sF~~~~~kr~~~k 274 (366)
..|||++|+|.||+++||||++++++..++||+|..|....++|.++.
T Consensus 89 -----~~HlHisl~~~~G~v~GGHL~~g~~V~~t~Ev~i~~~~~~~~~R~~D~ 136 (154)
T 2hx0_A 89 -----GEHLHLAVSDPYGVMLGGHMMPGCTVRTTLELVIGELPALTFSRQPCA 136 (154)
T ss_dssp -----EEEEEEEEECTTSCEEEEEECTTCEEEEEEEEEEEECTTEEEEEEECT
T ss_pred -----CCEEEEEEECCCCCEEccccCCCCcEEEEEEEEEEEccCceEEEecCC
Confidence 289999999999999999999877777899999999998889988764
No 2
>2p6y_A Hypothetical protein VCA0587; NESG, Q9KM02_vibch, VCR80, structural genomics, PSI-2, prote structure initiative; 1.63A {Vibrio cholerae}
Probab=99.95 E-value=2.4e-27 Score=205.70 Aligned_cols=119 Identities=24% Similarity=0.332 Sum_probs=107.7
Q ss_pred CceeEEEEEcCCCCHHHHHHHHHhhC-CccEEEEEeeceeeeEEEecCCCCCCceeeeeceeEEEeeeceeecCCCCCCC
Q 038197 147 DFTPHVVTVNTGEDVAGKILSFSQKG-PRGICVLSANGAVSNVTIRQPGSSGGILTYEGRFEILSLSGSFTVTETGGARS 225 (366)
Q Consensus 147 ~~~phVIrV~~GEDIvesI~~Faq~~-~ra~cILSAiGAVsnVTLrq~~~s~~~~t~eG~FEILSLSGnis~~~~gg~~~ 225 (366)
.|++|++||++||||+++|.+||++. .+++||++++|++++++||+++... +++|+|+|||+||+|+|++.
T Consensus 1 ~~r~~~lrL~~Gedl~~~i~~~~~~~~i~~a~v~~~iGsl~~~~l~~~~~~~-~~~~~g~~EIlsl~Gti~~~------- 72 (142)
T 2p6y_A 1 MIHLIALRLTRGMDLKQQIVQLVQQHRIHAGSIASCVGCLSTLHIRLADSVS-TLQVSAPFEILSLSGTLTYQ------- 72 (142)
T ss_dssp CCEEEEEEECTTCBHHHHHHHHHHHTTCSSEEEEEEEEEEEEEEEECTTSSC-EEEECSCEEEEEEEEEECSS-------
T ss_pred CCcEEEEEECCCCcHHHHHHHHHHHhCCCEEEEEEeEEEEEeEEEECCCCCc-cEecCCcEEEEEeEEEEeCC-------
Confidence 37899999999999999999999984 5578998999999999999999865 68899999999999999984
Q ss_pred CCCeeEEEEeCCCCcEEeeecCCccEEecceEEEEEEcCCCcccccccc
Q 038197 226 RTGGLSVSLAGPDGRVIGGGVAGLLMAASPIQIVVGSFMPNGFKVHKRK 274 (366)
Q Consensus 226 ~~~HLHVSLA~~dGqViGGHL~g~LIAasTVEVVV~sF~~~~~kr~~~k 274 (366)
..|||++|+|.||+++||||+++++++.++||+|..|.+..|+|.++.
T Consensus 73 -~~HlHisl~~~~G~v~GGHl~~g~~V~~t~Ev~i~~~~~~~~~R~~D~ 120 (142)
T 2p6y_A 73 -HCHLHIAVADAQGRVWGGHLLEGNLINTTAELMIHHYPQHHFTREFDP 120 (142)
T ss_dssp -CEEEEEEEECTTSCEEEEEECTTCEECC-EEEEEEECTTEEEEEEEET
T ss_pred -CCEEEEEEECCCCCEEccccCCCCeEEEEEEEEEEEccCCeEEEeeCC
Confidence 289999999999999999999876778899999999999889998764
No 3
>2dt4_A Hypothetical protein PH0802; PPC domain, structural genomics, unknown function; 1.60A {Pyrococcus horikoshii}
Probab=99.95 E-value=7.9e-28 Score=208.20 Aligned_cols=118 Identities=19% Similarity=0.261 Sum_probs=107.3
Q ss_pred eeEEEEEcCCCCHHHHHHHHHhhCCccEEEEEeeceeeeEEEecCCCCC---CceeeeeceeEEEeeeceeecCCCCCCC
Q 038197 149 TPHVVTVNTGEDVAGKILSFSQKGPRGICVLSANGAVSNVTIRQPGSSG---GILTYEGRFEILSLSGSFTVTETGGARS 225 (366)
Q Consensus 149 ~phVIrV~~GEDIvesI~~Faq~~~ra~cILSAiGAVsnVTLrq~~~s~---~~~t~eG~FEILSLSGnis~~~~gg~~~ 225 (366)
++|++||++||||+++|.+||+++.+..|+++++|++++|+|||++... ..++|+|+|||+||+|+|++.++ +
T Consensus 10 r~~~lrl~~Gedl~~~i~~~~~~~~i~~a~vs~iGsl~~~~l~~~~~~~~~~~~~~~~g~~EIlsl~Gti~~~~g----~ 85 (143)
T 2dt4_A 10 RTYLFRVPEGEELLTYIKNFCKKEGIETAIINGIGTLKNPKIGYFLEEKKEYKVIPLKGSYELISLIGNVSLKDG----E 85 (143)
T ss_dssp EEEEEEECTTCBHHHHHHHHHHHHTCCSEEEEEEEEEEEEEEEEEETTTTEEEEEECCSEEEEEEEEEEEEEETT----E
T ss_pred CEEEEEECCCCcHHHHHHHHHHHcCCCEEEEEEEEEEEEEEEEeecCccCcceeEeecCCEEEEEeEEEEECCCC----C
Confidence 6999999999999999999999977766667999999999999998765 26889999999999999999753 5
Q ss_pred CCCeeEEEEeCCCCcEEeeecCCccEEecceEEEEEEcCCCcccccc
Q 038197 226 RTGGLSVSLAGPDGRVIGGGVAGLLMAASPIQIVVGSFMPNGFKVHK 272 (366)
Q Consensus 226 ~~~HLHVSLA~~dGqViGGHL~g~LIAasTVEVVV~sF~~~~~kr~~ 272 (366)
++.|||++|+|.||+++||||.+++ ++ ++||+|.+|.+..|+|.+
T Consensus 86 p~~HlHi~l~~~~G~v~GGHl~~g~-v~-t~Ev~i~~~~~~~~~R~~ 130 (143)
T 2dt4_A 86 PFVHAHVSLGNEEGIVFGGHLVEGE-VF-VAEIFLQELKGEKIERKP 130 (143)
T ss_dssp EEEEEEEEEECTTSCEEEEEEEEEE-EE-EEEEEEEEEEESCCEEBC
T ss_pred ceeeEEEEEECCCCCEeCCCCCCCc-eE-EEEEEEEEcCCCeEEEeC
Confidence 7899999999999999999999888 66 999999999998899887
No 4
>3htn_A Putative DNA binding protein; DUF269 family protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE 1PE; 1.50A {Bacteroides thetaiotaomicron vpi-5482} SCOP: d.290.1.0
Probab=99.95 E-value=2.1e-27 Score=207.69 Aligned_cols=120 Identities=14% Similarity=0.203 Sum_probs=108.4
Q ss_pred eeEEEEEcCCCCHHHHHHHHHhhCCccEEEEEeeceeeeEEEecCCCCCC---ceeeeeceeEEEeeeceeecCCCCCCC
Q 038197 149 TPHVVTVNTGEDVAGKILSFSQKGPRGICVLSANGAVSNVTIRQPGSSGG---ILTYEGRFEILSLSGSFTVTETGGARS 225 (366)
Q Consensus 149 ~phVIrV~~GEDIvesI~~Faq~~~ra~cILSAiGAVsnVTLrq~~~s~~---~~t~eG~FEILSLSGnis~~~~gg~~~ 225 (366)
+.|++||++||||+++|.+||+++.+..|+++++|++++|+||+++.... .++|+|+|||+||+|||++.++ +
T Consensus 16 r~~~lrl~~Gedl~~~l~~~~~~~~i~~a~vs~iGsl~~~~l~~~~~~~~~y~~~~~~g~~EI~sl~Gti~~~dG----~ 91 (149)
T 3htn_A 16 NKYIVSINNHTEIVKALNAFCKEKGILSGSINGIGAIGELTLRFFNPKTKAYDDKTFREQMEISNLTGNISSMNE----Q 91 (149)
T ss_dssp TEEEEEECTTCBHHHHHHHHHHHHTCCSEEEEEEEEEEEEEEEEECTTTCCEEEEEECSCEEEEEEEEEEEEETT----E
T ss_pred CEEEEEECCCChHHHHHHHHHHHcCCcEEEEEEEEEeeeEEEEccCCCcccceeEEecCceEEEEeEEEEEccCC----C
Confidence 68999999999999999999999888877779999999999999987642 5799999999999999999753 6
Q ss_pred CCCeeEEEEeCCCCcEEeeecCCccEEecceEEEEEEcCCCcccccccc
Q 038197 226 RTGGLSVSLAGPDGRVIGGGVAGLLMAASPIQIVVGSFMPNGFKVHKRK 274 (366)
Q Consensus 226 ~~~HLHVSLA~~dGqViGGHL~g~LIAasTVEVVV~sF~~~~~kr~~~k 274 (366)
++.|||++|+|.||+++||||..+ ++..++||+|..+.. .+.|.++.
T Consensus 92 p~~HlH~sl~~~~G~v~gGHl~~g-~V~~t~Ei~i~~~~~-~~~R~~D~ 138 (149)
T 3htn_A 92 VYLHLHITVGRSDYSALAGHLLSA-IQNGAGEFVVEDYSE-RISRTYNP 138 (149)
T ss_dssp EEEEEEEEEECTTSBEEEEEEEEE-EEEEEEEEEEEECCS-CCEEEEET
T ss_pred ceEEEEEEEECCCCCEEeEEeCCC-EEEEEEEEEEEEcCC-eeEEeeCC
Confidence 889999999999999999999998 677899999999988 68877653
No 5
>2h6l_A Hypothetical protein; NESG GR103, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.00A {Archaeoglobus fulgidus} SCOP: d.290.1.3
Probab=99.94 E-value=2.8e-27 Score=205.39 Aligned_cols=120 Identities=21% Similarity=0.224 Sum_probs=107.5
Q ss_pred eeEEEEEcCCCCHHHHHHHHHhhCCccEEEEEeeceeeeEEEecCCCCC---CceeeeeceeEEEeeeceeecCCCCCCC
Q 038197 149 TPHVVTVNTGEDVAGKILSFSQKGPRGICVLSANGAVSNVTIRQPGSSG---GILTYEGRFEILSLSGSFTVTETGGARS 225 (366)
Q Consensus 149 ~phVIrV~~GEDIvesI~~Faq~~~ra~cILSAiGAVsnVTLrq~~~s~---~~~t~eG~FEILSLSGnis~~~~gg~~~ 225 (366)
++|+|||++||||+++|.+||++..+..|+++++|+|++++||+++... ..++|+|+|||+||+|+|++.++ +
T Consensus 10 r~~~lrl~~Gedl~~~i~~~~~~~~i~~a~vs~iGsl~~~~l~~~~~~~~~y~~~~~~g~~EIlsl~Gti~~~dg----~ 85 (146)
T 2h6l_A 10 KGFLLRLDYGKDLVRQIEEFLEEKGIHAAHISAIGAVRSAVIGYYDQEKKEYVKKELMEPLEILSLSGNVSMKDS----K 85 (146)
T ss_dssp EEEEEECCTTSBHHHHHHHHHHHHTCCSEEEEEEEEEEEEEEEEEETTTTEEEEEEECSCEEEEEEEEEEEEETT----E
T ss_pred CEEEEEECCCCCHHHHHHHHHHHcCCCEEEEEEEEEEEEEEEECCCCCCcceeEEEecCcEEEEEeEEEEECCCC----C
Confidence 5999999999999999999999966665556999999999999998776 36889999999999999999753 5
Q ss_pred CCCeeEEEEeCCCCcEEeeecCCccEEecceEEEEEEcCCCccccccccc
Q 038197 226 RTGGLSVSLAGPDGRVIGGGVAGLLMAASPIQIVVGSFMPNGFKVHKRKH 275 (366)
Q Consensus 226 ~~~HLHVSLA~~dGqViGGHL~g~LIAasTVEVVV~sF~~~~~kr~~~k~ 275 (366)
++.|||++|+ .||+++||||.+++| .++||+|.+|.+..|+|.++..
T Consensus 86 p~~HlHi~l~-~~G~v~gGHl~~g~V--~t~Evvi~~~~~~~~~R~~D~e 132 (146)
T 2h6l_A 86 PFCHIHVLLG-KDGEVYGGHLFSAEV--FACEVFVLPLSGEAPERAFDEQ 132 (146)
T ss_dssp EEEEEEEEEE-EBTEEEEEEEEEEEE--EEEEEEEEECBSCCCBEEECTT
T ss_pred ceeeEEEEEC-CCCcEEeeecCCCEE--EEEEEEEEEcCCCcEEEeECCC
Confidence 7899999999 999999999999884 6999999999998899987643
No 6
>3hwu_A Putative DNA-binding protein; YP_299413.1, structural genomi center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.30A {Ralstonia eutropha}
Probab=99.92 E-value=1.2e-24 Score=189.60 Aligned_cols=120 Identities=15% Similarity=0.160 Sum_probs=105.4
Q ss_pred eeEEEEEcCCCCHHHHHHHHHhhCCccEEEEEeeceeeeEEEecCCCCCC---ceeeeeceeEEEeeeceeecCCCCCCC
Q 038197 149 TPHVVTVNTGEDVAGKILSFSQKGPRGICVLSANGAVSNVTIRQPGSSGG---ILTYEGRFEILSLSGSFTVTETGGARS 225 (366)
Q Consensus 149 ~phVIrV~~GEDIvesI~~Faq~~~ra~cILSAiGAVsnVTLrq~~~s~~---~~t~eG~FEILSLSGnis~~~~gg~~~ 225 (366)
+.+++||++||||+++|.+||+++.+..++++++|++++++|++++.... ..+++ ++||+||+|||++.++ +
T Consensus 13 ~~~~~rL~~Gedl~~~l~~~~~~~~i~~a~v~~iGsl~~~~l~~~~~~~~~y~~~~~~-~~Ei~sl~Gtis~~dG----~ 87 (147)
T 3hwu_A 13 TGYLMVLRHGDNVLQNLEQLARDEHIPSASFVGIGFMSEATFGFYDFGRKQFDPKTYR-NVEMANMTGSIAWKEG----K 87 (147)
T ss_dssp TEEEEEEETTCBHHHHHHHHHHHTTCSEEEEEEEEEEEEEEEEEEETTTTEEEEEEEE-EEEEEEEEEEEEEETT----E
T ss_pred CEEEEEECCCChHHHHHHHHHHHcCCCEEEEEEEecccEEEEEeecCCcCccccEEec-CcEEEEEEEEEEcCCC----C
Confidence 46999999999999999999999999888889999999999999987652 45678 8999999999998663 6
Q ss_pred CCCeeEEEEeCCCCcEEeeecCCccEEecceEEEEEEcCCCcccccccc
Q 038197 226 RTGGLSVSLAGPDGRVIGGGVAGLLMAASPIQIVVGSFMPNGFKVHKRK 274 (366)
Q Consensus 226 ~~~HLHVSLA~~dGqViGGHL~g~LIAasTVEVVV~sF~~~~~kr~~~k 274 (366)
++.|||++|+|.||+++||||..+.+...|+||+|..+.. .+.|.++.
T Consensus 88 p~~HlH~~~~d~~g~v~GGHL~~g~V~~~t~Ei~i~~~~~-~~~R~~D~ 135 (147)
T 3hwu_A 88 PSIHAHGTVTDGTFQGAGGHLLGLTVGTGSCEITVTVYPQ-RLDRFVDP 135 (147)
T ss_dssp EEEEEEEEEECTTCCEEEEEEEEEEEEEEEEEEEEEEESS-CCBEEEET
T ss_pred ceEEEEEEEECCCCcEEeeEecCcEEEeEeEEEEEEEcCC-eEEEEECC
Confidence 8999999999999999999999985443599999998754 78887754
No 7
>2ezd_A High mobility group protein HMG-I/HMG-Y; DNA binding protein, minor groove DNA binding, transcriptional CO-activator, architectural factor; HET: DNA; NMR {Homo sapiens} SCOP: j.10.1.1 PDB: 2eze_A*
Probab=96.64 E-value=0.00092 Score=42.92 Aligned_cols=16 Identities=56% Similarity=0.796 Sum_probs=14.5
Q ss_pred CCCCCCCCCCCCCCcc
Q 038197 116 SSKRGRGRPPGSGNWQ 131 (366)
Q Consensus 116 ~~kr~RGRP~GSknK~ 131 (366)
..||+||||.|||||.
T Consensus 3 tpKrpRgRpkGSKNk~ 18 (26)
T 2ezd_A 3 TPKRPRGRPKGSKNKG 18 (26)
T ss_dssp SCCCCSSCCTTCCCCS
T ss_pred CCcCCCCCcCcccccC
Confidence 4699999999999986
No 8
>4dyq_A Gene 1 protein; GP1, octamer, DNA-binding, viral protein; 1.50A {Shigella phage SF6} PDB: 4dyc_A 4dyr_A 3hef_A 4dzj_A 4dzp_A
Probab=70.12 E-value=1.3 Score=37.37 Aligned_cols=14 Identities=36% Similarity=0.695 Sum_probs=6.4
Q ss_pred CcccCCCCCCCCCC
Q 038197 70 GKKKRGRPRKYDSD 83 (366)
Q Consensus 70 ~KKKRGRPRKY~pD 83 (366)
.|+|+|||.||.+.
T Consensus 3 ~~~k~GRPtk~t~e 16 (140)
T 4dyq_A 3 TEPKAGRPSDYMPE 16 (140)
T ss_dssp -------CCSCCTT
T ss_pred CCCCCCCCCCCCHH
Confidence 38999999999986
No 9
>1xv2_A ALDC, hypothetical protein, similar to alpha- acetolactate decarboxylase; structural genomics, MCSG; 2.00A {Staphylococcus aureus subsp} SCOP: d.290.1.1
Probab=41.10 E-value=94 Score=28.84 Aligned_cols=99 Identities=13% Similarity=0.168 Sum_probs=53.5
Q ss_pred CCCHHHHHHHHHhhCCccEEEEEeeceeeeEEEecCCCCC-C------ceeeeeceeEEEeeece----eecCCCCCCCC
Q 038197 158 GEDVAGKILSFSQKGPRGICVLSANGAVSNVTIRQPGSSG-G------ILTYEGRFEILSLSGSF----TVTETGGARSR 226 (366)
Q Consensus 158 GEDIvesI~~Faq~~~ra~cILSAiGAVsnVTLrq~~~s~-~------~~t~eG~FEILSLSGni----s~~~~gg~~~~ 226 (366)
-+++-+.|.+.. .....+.+-.-|..++|..|--.... . ...-+-.|++=...|++ ++.--.|. -
T Consensus 96 ~~~l~~~i~~~~--s~N~f~airi~G~F~~v~~R~vp~Q~~Py~~l~e~~~~Q~~f~~~~v~GTivGF~tP~~~~Gi--~ 171 (237)
T 1xv2_A 96 DDVFAQIKNEML--SENLFSAVKIYGTFKHMHVRMMPAQQPPYTRLIDSARRQPEEKRQDIRGAIVGFFTPELFHGV--G 171 (237)
T ss_dssp HHHHHHHHHHSS--CTTSCEEEEEEEEEEEEEEECCCCCCSSCCCTHHHHTTCCEEEEEEEEEEEEEEEECGGGBTT--B
T ss_pred HHHHHHHHHhhh--ccccEEEEEEEEEeCeEEEEecCCCCCCCCCHHHHhcCCceEEEeccEEEEEEEecchhhccc--C
Confidence 334444444443 45567888999999999999653221 1 11112225555655555 44321122 2
Q ss_pred CCeeEEEEeCCCCcEEeeecCCccEEecceEEEEEEc
Q 038197 227 TGGLSVSLAGPDGRVIGGGVAGLLMAASPIQIVVGSF 263 (366)
Q Consensus 227 ~~HLHVSLA~~dGqViGGHL~g~LIAasTVEVVV~sF 263 (366)
..++|+.+-+.| +-+||||.+-.+-.. .|-+..+
T Consensus 172 v~G~HlHFisdD-r~~GGHVldf~~~~~--~~~~~~~ 205 (237)
T 1xv2_A 172 SAGFHIHFADDE-RAYGGHVLDFEVDDV--VVEIQNF 205 (237)
T ss_dssp CSEEEEEEEETT-SSCEEEEEEEEEEEE--EEEEEEC
T ss_pred CceeEEEEEcCC-CCCCcceEEEEecce--EEEEeec
Confidence 344455555434 458999998555444 4444444
No 10
>4i95_A Putative uncharacterized protein; lipocalin-like domain of PF13924 family, structural genomics center for structural genomics, JCSG; HET: MSE; 1.81A {Bacteroides eggerthii} PDB: 4gzv_A
Probab=24.08 E-value=58 Score=28.45 Aligned_cols=34 Identities=38% Similarity=0.568 Sum_probs=28.8
Q ss_pred cEEEEEeeceeeeEEEecCCCCCCceeeeeceeEEE
Q 038197 175 GICVLSANGAVSNVTIRQPGSSGGILTYEGRFEILS 210 (366)
Q Consensus 175 a~cILSAiGAVsnVTLrq~~~s~~~~t~eG~FEILS 210 (366)
..=|||.=|.+.|++++. + .+.+++..|.|||.|
T Consensus 37 ~lKIlSdDgtF~Ni~m~~-~-~~aiIt~~GtY~~~S 70 (142)
T 4i95_A 37 TFKVLSDDGRIVNFTIRP-G-TDAIITGYGTYRQIS 70 (142)
T ss_dssp EEEEECTTSEEEEEECCT-T-SCCEEEEEEEEEEEE
T ss_pred cEEEEcCCCcEEEEEEec-C-CCcEEEEeEEEEecC
Confidence 567899999999999993 3 456899999999997
No 11
>1t3g_A X-linked interleukin-1 receptor accessory protein-like 1; TIR, IL-1RAPL, IL-1R, TLR, membrane protein; 2.30A {Homo sapiens}
Probab=21.05 E-value=56 Score=27.80 Aligned_cols=27 Identities=11% Similarity=0.105 Sum_probs=24.8
Q ss_pred EcCCCCHHHHHHHHHhhCCccEEEEEe
Q 038197 155 VNTGEDVAGKILSFSQKGPRGICVLSA 181 (366)
Q Consensus 155 V~~GEDIvesI~~Faq~~~ra~cILSA 181 (366)
+.+|++|.+.|.+..++-.+.++|||-
T Consensus 51 ~~~G~~i~~~i~~~I~~Sr~~IvVlS~ 77 (159)
T 1t3g_A 51 LIPTGTYIEDVARCVDQSKRLIIVMTP 77 (159)
T ss_dssp CCCCTTHHHHHHHHHHTBSEEEEEECH
T ss_pred ccCccchHHHHHHHHHHcCEEEEEEcc
Confidence 679999999999999998899999985
Done!