BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 038200
(523 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|147772239|emb|CAN73672.1| hypothetical protein VITISV_031859 [Vitis vinifera]
Length = 901
Score = 617 bits (1590), Expect = e-174, Method: Compositional matrix adjust.
Identities = 294/513 (57%), Positives = 372/513 (72%), Gaps = 18/513 (3%)
Query: 1 MKQLLQIQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIK 60
M+QL QIQA+LI SGLF F +LK SAD+ +YT+L+F+ I++P T CVNAVIK
Sbjct: 385 MRQLSQIQAYLIISGLF-RKPFVASKVLKVSADYADVNYTILIFRSIDSPDTVCVNAVIK 443
Query: 61 AYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDF 120
AYS S V Q +VFY + ++NGFM NS+TF LF C K GCVE G HG A+KNGVD
Sbjct: 444 AYSISSVAHQALVFYFETLRNGFMCNSFTFPPLFSCCRKXGCVEYGEKFHGQAIKNGVDN 503
Query: 121 ELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMP 180
L V NS+++MYGC G ++ A +F +MS RDL+SWNSI+ + + G + AH LFD MP
Sbjct: 504 VLDVQNSMVHMYGCCGVVEXAEKVFGEMSKRDLVSWNSIIDAYAKLGHLVLAHRLFDAMP 563
Query: 181 ERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRS 240
ERN VSWNIM+ GY K GNPGC+LKLFREM +G RG + TM SVLTAC RSAR EGRS
Sbjct: 564 ERNAVSWNIMMGGYLKGGNPGCALKLFREMANAGLRGGETTMVSVLTACCRSARLKEGRS 623
Query: 241 VHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGK 300
+HG +RT LK ++ILDTALID+YSKC++V+VA+ V+D M NLVCWNAMILGHCIHG
Sbjct: 624 IHGVLIRTFLKSSLILDTALIDMYSKCERVDVARVVYDRMTKXNLVCWNAMILGHCIHGN 683
Query: 301 PEEGIKLFTALVNGT---------------VAGGSISPDEITFIGVICACVRAELLTEGR 345
E+G+KLF +V+G + G + PDEITFIGV+CAC R LL EGR
Sbjct: 684 AEDGLKLFEEMVDGIRSEDGEINLDKGIKRIEGQGLJPDEITFIGVLCACAREGLLAEGR 743
Query: 346 KYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLL 405
Y+ QMI+ + IKPNFAHYWCMANL+AG L +EAEEILR MPE+++++S+ES W LL
Sbjct: 744 SYYSQMINTFHIKPNFAHYWCMANLFAGVGLVQEAEEILRSMPEEDEDLSWESSFWAGLL 803
Query: 406 SLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGR 465
S CRFQG V + ER+A ++ +PQ+ S Y+ LLNVYAVAG+WEDVARV+E++K+R + +
Sbjct: 804 SSCRFQGXVFLGERIATYLIESEPQNISYYRLLLNVYAVAGRWEDVARVKEMVKERGIKQ 863
Query: 466 MPGCRLVDLKEVVEKLKVGHFWRGGMKEEVNKM 498
MPGC L DLKE+V + K+G W+ GM EVN M
Sbjct: 864 MPGCNLADLKEIVHEFKLGEKWQQGM--EVNTM 894
>gi|224133640|ref|XP_002327644.1| predicted protein [Populus trichocarpa]
gi|222836729|gb|EEE75122.1| predicted protein [Populus trichocarpa]
Length = 564
Score = 599 bits (1544), Expect = e-168, Method: Compositional matrix adjust.
Identities = 286/500 (57%), Positives = 367/500 (73%), Gaps = 5/500 (1%)
Query: 3 QLLQIQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAY 62
L QIQA LIT GLF S W+ LLKH ADFG DYT+ +FK I +PGTF VN V+KAY
Sbjct: 66 HLYQIQAQLITCGLF---SLWSPRLLKHFADFGDIDYTIFIFKFIASPGTFVVNNVVKAY 122
Query: 63 SNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFEL 122
S S P++ +VFY +M+K+GF PNSYTFVSLFG CAK GC + G HG A+KNGVD L
Sbjct: 123 SLSSEPNKALVFYFEMLKSGFCPNSYTFVSLFGCCAKVGCAKLGKKYHGQAVKNGVDRIL 182
Query: 123 PVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPER 182
PV NSLI+ YGC G M A+ +F +MS RDL+SWNSI+ G+ G++ AH LF++MPER
Sbjct: 183 PVENSLIHCYGCCGDMGLAKKVFDEMSHRDLVSWNSIIDGYATLGELGIAHGLFEVMPER 242
Query: 183 NVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVH 242
NVVSWNI+ISGY K NPGC L LFR+MM G RGND T+ SVL+ACGRSAR EGRSVH
Sbjct: 243 NVVSWNILISGYLKGNNPGCVLMLFRKMMNDGMRGNDSTIVSVLSACGRSARLREGRSVH 302
Query: 243 GYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPE 302
G+ V+ N+I +T LID+Y++C KVE+A+R+FD + RNL CWNAMILGHC+HG P+
Sbjct: 303 GFIVKKFSSMNVIHETTLIDMYNRCHKVEMARRIFDKVVRRNLGCWNAMILGHCLHGNPD 362
Query: 303 EGIKLFTALVNGTVAG--GSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPN 360
+G++LF +V+ G S+ PDE+TFIGV+CAC RA LLTEG+ +F QMI + +KPN
Sbjct: 363 DGLELFKDMVDRAGLGKRDSVHPDEVTFIGVLCACARAGLLTEGKNFFSQMIYNHGLKPN 422
Query: 361 FAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERL 420
FAH+WCMANLYA A L +EAE+ILR E+ ++M ES++W +LL+ CRFQG VA+ ER+
Sbjct: 423 FAHFWCMANLYARAGLIQEAEDILRTTQEEEEDMPLESLVWANLLNSCRFQGNVALGERI 482
Query: 421 AKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLKEVVEK 480
A S +DM+P + Y+ LLNVYAV G+W+DVA V++L+K + GR PGC LVDLKE+V
Sbjct: 483 ANSLIDMEPWNILHYRLLLNVYAVGGRWDDVAMVKDLVKTKMKGRTPGCNLVDLKEIVHN 542
Query: 481 LKVGHFWRGGMKEEVNKMME 500
+VG + E ++M+
Sbjct: 543 YEVGRLLPERIGELNTQLMK 562
>gi|449434472|ref|XP_004135020.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g51320-like [Cucumis sativus]
Length = 575
Score = 577 bits (1487), Expect = e-162, Method: Compositional matrix adjust.
Identities = 270/509 (53%), Positives = 364/509 (71%), Gaps = 17/509 (3%)
Query: 1 MKQLLQIQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIK 60
+++L Q HLITSGLF N+ FW +L +++FG YTVL+F+ I P TFCVN VIK
Sbjct: 62 VRELFQFHGHLITSGLF-NDHFWANRVLLQASEFGDIVYTVLIFRHIKVPNTFCVNRVIK 120
Query: 61 AYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDF 120
AYS S VP + V Y + + NG P+SYTF+SLF +CA GC G CHG A KNGVD
Sbjct: 121 AYSLSTVPLEAVFVYFEWLGNGLRPDSYTFLSLFSACASFGCGASGRKCHGQAFKNGVDS 180
Query: 121 ELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMP 180
+ + NSLI+MYGC ++ R +F +MS +DL+SWNSIV+ + R GD+ AH++FD+MP
Sbjct: 181 VMVLGNSLIHMYGCCKHIELGRKVFDEMSTQDLVSWNSIVTAYARVGDLYTAHDMFDVMP 240
Query: 181 ERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRS 240
ERNVVSWN+MIS Y + GNPGC++KLFR M+ G RGN+ TM +VL+AC RSAR NEGRS
Sbjct: 241 ERNVVSWNLMISEYLRGGNPGCAMKLFRNMVNVGIRGNNTTMVNVLSACSRSARLNEGRS 300
Query: 241 VHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGK 300
VHG+ R S+K + ++TAL+D+YSKC +V VA+RVFD + RNLV WNAMILGH +HG
Sbjct: 301 VHGFMYRASMKFCVFINTALVDMYSKCHRVSVARRVFDRLMIRNLVTWNAMILGHSLHGN 360
Query: 301 PEEGIKLFTALV------NGTVAGG----------SISPDEITFIGVICACVRAELLTEG 344
P++G++LF +V N G + PD+ITFIGV+CAC RA LL +
Sbjct: 361 PKDGLELFEEMVGELREINEETGNGKKFKQDEGKRKVFPDQITFIGVLCACARAGLLKDA 420
Query: 345 RKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSL 404
YF +MI+ + ++PNF HYWC+AN+Y L E+A EILR MPEDN++ S ES++W+ L
Sbjct: 421 ENYFDEMINVFLVRPNFGHYWCLANVYVAVGLIEQAVEILRNMPEDNEDFSSESVVWIDL 480
Query: 405 LSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMG 464
L+ CRF G V++ E++AK +DM+P++ S Y+ LLN+YAVAG+WEDV+R++ LMK++R+G
Sbjct: 481 LTTCRFVGDVSLGEQIAKYLIDMEPKNDSYYRLLLNIYAVAGRWEDVSRIKLLMKEKRLG 540
Query: 465 RMPGCRLVDLKEVVEKLKVGHFWRGGMKE 493
M GCRLVDLKE+V LK+G+ + MKE
Sbjct: 541 TMSGCRLVDLKEIVHSLKLGNHLQERMKE 569
>gi|357483883|ref|XP_003612228.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355513563|gb|AES95186.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 665
Score = 573 bits (1477), Expect = e-161, Method: Compositional matrix adjust.
Identities = 278/513 (54%), Positives = 361/513 (70%), Gaps = 18/513 (3%)
Query: 3 QLLQIQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNP-GTFCVNAVIKA 61
LLQIQ+ LITS F+ N F + LL +++ + D+T L+F NNP TFCVN VI +
Sbjct: 53 HLLQIQSLLITSS-FYRNPFLSRTLLSRASNLCTVDFTFLIFHHFNNPLDTFCVNTVINS 111
Query: 62 YSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFE 121
Y NS VP + +VFY +K GF NSYTFVSL +C+K CV+ G MCHG A+KNGVDF
Sbjct: 112 YCNSYVPHKAIVFYFSSLKIGFFANSYTFVSLISACSKMSCVDNGKMCHGQAVKNGVDFV 171
Query: 122 LPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPE 181
LPV NSL +MYG G ++ AR MF M RDL+SWNS++ G+V+ GD+SAAH+LFD+MPE
Sbjct: 172 LPVENSLAHMYGSCGYVEVARVMFDGMVSRDLVSWNSMIDGYVKVGDLSAAHKLFDVMPE 231
Query: 182 RNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSV 241
RN+V+WN +ISGYSK NPG +LKLFREM + R N +TM +TACGRS R EG+SV
Sbjct: 232 RNLVTWNCLISGYSKGRNPGYALKLFREMGRLRIRENARTMVCAVTACGRSGRLKEGKSV 291
Query: 242 HGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKP 301
HG +R ++ ++ILDTALID+Y KC +VE A +VF+ M+ RNLV WNAMILGHCIHG P
Sbjct: 292 HGSMIRLFMRSSLILDTALIDMYCKCGRVEAASKVFERMSSRNLVSWNAMILGHCIHGNP 351
Query: 302 EEGIKLFTALVNGTVAGGSIS---------------PDEITFIGVICACVRAELLTEGRK 346
E+G+ LF +V G + PDEITFIG++CAC RAELL+EGR
Sbjct: 352 EDGLSLFDLMVGMERVKGEVEVDESSSADRGLVRLLPDEITFIGILCACARAELLSEGRS 411
Query: 347 YFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLS 406
YF+QMID + +KPNFAH+WCMANL A L +EAEE L+ M + + +S ES++W SLL
Sbjct: 412 YFKQMIDVFGLKPNFAHFWCMANLLANVGLIDEAEECLKNMAKFDGYISHESLLWASLLG 471
Query: 407 LCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRM 466
LCRF+ V + E++AK +D DP + + YQFLL +YAVA QWE+V+RV++LMK+R++ +
Sbjct: 472 LCRFKRDVYLGEQIAKLLIDTDPNNLAYYQFLLIIYAVAAQWENVSRVQKLMKERKLDII 531
Query: 467 PGCRLVDLKEVVEKLKVGHFWRGGMKEEVNKMM 499
PG LVDLK +V KV + WR G+ E VN MM
Sbjct: 532 PGSNLVDLKNIVHNFKVSNNWREGI-EAVNIMM 563
>gi|356495350|ref|XP_003516541.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g51320-like [Glycine max]
Length = 579
Score = 560 bits (1442), Expect = e-157, Method: Compositional matrix adjust.
Identities = 275/507 (54%), Positives = 357/507 (70%), Gaps = 10/507 (1%)
Query: 2 KQLLQIQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKA 61
+ LLQIQA L+TS LF N + +L ++ YT ++F+ IN+ TFCVN VI+A
Sbjct: 55 RHLLQIQALLVTSSLF-RNPYLARTILSRASHLCDVAYTRVIFRSINSLDTFCVNIVIQA 113
Query: 62 YSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFE 121
YSNS P + +VFY + + GF PNSYTFV L SCAK GC+ G CH A KNGVD
Sbjct: 114 YSNSHAPREAIVFYFRSLMRGFFPNSYTFVPLVASCAKMGCIGSGKECHAQATKNGVDSV 173
Query: 122 LPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPE 181
LPV NSLI+MY C G + AR +F M RDL+SWNSI++GH+ G+++AAH LFD MPE
Sbjct: 174 LPVQNSLIHMYVCCGGVQLARVLFDGMLSRDLVSWNSIINGHMMVGELNAAHRLFDKMPE 233
Query: 182 RNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSV 241
RN+V+WN+MISGY K NPG ++KLFREM + G RGN +TM V TACGRS R E +SV
Sbjct: 234 RNLVTWNVMISGYLKGRNPGYAMKLFREMGRLGLRGNARTMVCVATACGRSGRLKEAKSV 293
Query: 242 HGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKP 301
HG VR SL+ ++ILDTALI +Y KC+KVEVAQ VF+ M +RNLV WN MILGHCI G P
Sbjct: 294 HGSIVRMSLRSSLILDTALIGMYCKCRKVEVAQIVFERMRERNLVSWNMMILGHCIRGSP 353
Query: 302 EEGIKLFTALVN-GTVAGGSIS-------PDEITFIGVICACVRAELLTEGRKYFRQMID 353
E+G+ LF +++ G + G S P+E+TFIGV+CAC RAE+L EGR YF+QM D
Sbjct: 354 EDGLDLFEVMISMGKMKHGVESDETLRLLPNEVTFIGVLCACARAEMLDEGRSYFKQMTD 413
Query: 354 FYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGA 413
+ +KPN+AH+WCMANL A +L EAEE LR M E + +MS ES++W SLL LC F+
Sbjct: 414 VFGVKPNYAHFWCMANLLASVKLVGEAEEFLRSMAEFDGDMSCESLVWASLLGLCHFKRD 473
Query: 414 VAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVD 473
V + ER+AK VDMDP++ + YQFLL +YAV+ QWE+V+ V++L+K+RR+ +PG LVD
Sbjct: 474 VYLGERIAKLLVDMDPKNLTCYQFLLIIYAVSAQWENVSEVQKLVKERRLEIIPGSSLVD 533
Query: 474 LKEVVEKLKVGHFWRGGMKEEVNKMME 500
LK +V KV + + G+ E VN MM+
Sbjct: 534 LKNIVHNFKVTNKGQEGI-EAVNLMMD 559
>gi|145339360|ref|NP_190700.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|122230198|sp|Q0WVU0.1|PP278_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g51320
gi|110741620|dbj|BAE98758.1| hypothetical protein [Arabidopsis thaliana]
gi|332645257|gb|AEE78778.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 530
Score = 545 bits (1404), Expect = e-152, Method: Compositional matrix adjust.
Identities = 248/484 (51%), Positives = 353/484 (72%), Gaps = 10/484 (2%)
Query: 1 MKQLLQIQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIK 60
+ L Q+ A LITSG F+++S W I LLK S+ FG YTV +++ I +C N V K
Sbjct: 35 ITHLFQVHARLITSGNFWDSS-WAIRLLKSSSRFGDSSYTVSIYRSIGK--LYCANPVFK 91
Query: 61 AYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDF 120
AY S P Q + FY +++ GF+P+SYTFVSL KT CV+ G MCHG A+K+G D
Sbjct: 92 AYLVSSSPKQALGFYFDILRFGFVPDSYTFVSLISCIEKTCCVDSGKMCHGQAIKHGCDQ 151
Query: 121 ELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMP 180
LPV NSL++MY C GA+D A+ +FV++ RD++SWNSI++G VR+GD+ AAH+LFD MP
Sbjct: 152 VLPVQNSLMHMYTCCGALDLAKKLFVEIPKRDIVSWNSIIAGMVRNGDVLAAHKLFDEMP 211
Query: 181 ERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRS 240
++N++SWNIMIS Y + NPG S+ LFREM+++GF+GN+ T+ +L ACGRSAR EGRS
Sbjct: 212 DKNIISWNIMISAYLGANNPGVSISLFREMVRAGFQGNESTLVLLLNACGRSARLKEGRS 271
Query: 241 VHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGK 300
VH +RT L ++++DTALID+Y KC++V +A+R+FDS++ RN V WN MIL HC+HG+
Sbjct: 272 VHASLIRTFLNSSVVIDTALIDMYGKCKEVGLARRIFDSLSIRNKVTWNVMILAHCLHGR 331
Query: 301 PEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPN 360
PE G++LF A++NG + PDE+TF+GV+C C RA L+++G+ Y+ M+D ++IKPN
Sbjct: 332 PEGGLELFEAMINGM-----LRPDEVTFVGVLCGCARAGLVSQGQSYYSLMVDEFQIKPN 386
Query: 361 FAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERL 420
F H WCMANLY+ A EEAEE L+ +P+ ++++ ES W +LLS RF G + E +
Sbjct: 387 FGHQWCMANLYSSAGFPEEAEEALKNLPD--EDVTPESTKWANLLSSSRFTGNPTLGESI 444
Query: 421 AKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLKEVVEK 480
AKS ++ DP ++ Y L+N+Y+V G+WEDV RVRE++K+R++GR+PGC LVDLKE+V
Sbjct: 445 AKSLIETDPLNYKYYHLLMNIYSVTGRWEDVNRVREMVKERKIGRIPGCGLVDLKEIVHG 504
Query: 481 LKVG 484
L++G
Sbjct: 505 LRLG 508
>gi|297819826|ref|XP_002877796.1| binding protein [Arabidopsis lyrata subsp. lyrata]
gi|297323634|gb|EFH54055.1| binding protein [Arabidopsis lyrata subsp. lyrata]
Length = 530
Score = 541 bits (1393), Expect = e-151, Method: Compositional matrix adjust.
Identities = 250/484 (51%), Positives = 353/484 (72%), Gaps = 10/484 (2%)
Query: 1 MKQLLQIQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIK 60
+K L Q+ A LITSG F+++S W I LLK S+ FG YT+ +F+ I +C N V K
Sbjct: 35 IKHLFQVHARLITSGNFWDSS-WAIRLLKCSSRFGDSSYTLSIFRSIGK--LYCANPVFK 91
Query: 61 AYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDF 120
AY S P Q + FY +++ GF+P++YTFVSL KT CV+ G MCHG A+K+G D
Sbjct: 92 AYLVSSSPKQALGFYFDILRFGFVPDTYTFVSLVSCIEKTCCVDSGKMCHGQAIKHGCDQ 151
Query: 121 ELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMP 180
LPV NSLI+MY C GA+D A+ +FV++ RD++SWNSI++G VR+GD+ AH+LFD MP
Sbjct: 152 VLPVQNSLIHMYTCCGALDLAKKLFVEIPKRDIVSWNSIIAGVVRNGDVLYAHKLFDEMP 211
Query: 181 ERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRS 240
E+N++SWNIMIS Y + NPG S+ LFREM+ +GF+GN+ T+ +L ACGRSAR EGRS
Sbjct: 212 EKNMISWNIMISAYLGANNPGVSIFLFREMVGAGFQGNENTLVLLLNACGRSARLKEGRS 271
Query: 241 VHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGK 300
VH +RT L ++++DTALID+Y KC++V++A+R+FDS++ RN V WN MIL HC+HG+
Sbjct: 272 VHASLIRTFLNSSVVIDTALIDMYGKCKEVDLARRIFDSLSVRNKVTWNVMILAHCLHGR 331
Query: 301 PEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPN 360
PE+G++LF A++NG + PDE+TF+GV+C C RA L+ +G+ Y+ M+D ++IKPN
Sbjct: 332 PEDGLELFEAMINGL-----LRPDEVTFVGVLCGCARAGLVYQGQSYYSLMVDEFEIKPN 386
Query: 361 FAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERL 420
F H WCMANLY+ A EEAEE L+ +PE ++++ ES W +LLS RF A+ E +
Sbjct: 387 FGHQWCMANLYSNAGFPEEAEEALKNLPE--EDVTPESAKWANLLSWSRFTVNPALGESI 444
Query: 421 AKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLKEVVEK 480
AKS ++ DP ++ Y L+N+Y+V G+WEDV RVRE++K+R++GR+PGC LVDLKE+V
Sbjct: 445 AKSLIETDPLNYKYYHLLMNIYSVTGRWEDVNRVREVVKERKIGRIPGCGLVDLKEIVHG 504
Query: 481 LKVG 484
L++G
Sbjct: 505 LRLG 508
>gi|449491452|ref|XP_004158900.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g51320-like [Cucumis sativus]
Length = 547
Score = 523 bits (1348), Expect = e-146, Method: Compositional matrix adjust.
Identities = 249/489 (50%), Positives = 341/489 (69%), Gaps = 22/489 (4%)
Query: 1 MKQLLQIQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIK 60
+ +LQI + + FFN+ +L +++FG YTVL+F+ I P TFCVN VIK
Sbjct: 65 IHPILQILLDITKATRFFNH---VRAVLLQASEFGDIVYTVLIFRHIKVPNTFCVNRVIK 121
Query: 61 AYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDF 120
AYS S VP + V Y + + NG P+SYTF+SLF +CA GC G CHG A KNGVD
Sbjct: 122 AYSLSTVPLEAVFVYFEWLGNGLRPDSYTFLSLFSACASFGCGASGRKCHGQAFKNGVDS 181
Query: 121 ELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMP 180
+ + NSLI+MYGC ++ R +F +MS +DL+SWNSIV+ + R GD+ AH++FD+MP
Sbjct: 182 VMVLGNSLIHMYGCCKHIELGRKVFDEMSTQDLVSWNSIVTAYARVGDLYTAHDMFDVMP 241
Query: 181 ERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRS 240
ERNVVSWN+MIS Y + GNPGC++KLFR M+ G RGN+ TM +VL+AC RSAR NEGRS
Sbjct: 242 ERNVVSWNLMISEYLRGGNPGCAMKLFRNMVNVGIRGNNTTMVNVLSACSRSARLNEGRS 301
Query: 241 VHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGK 300
VHG+ R S+K + ++TAL+D+YSKC +V VA+RVFD + RNLV WNAMILGH +HG
Sbjct: 302 VHGFMYRASMKFCVFINTALVDMYSKCHRVSVARRVFDRLMIRNLVTWNAMILGHSLHGN 361
Query: 301 PEEGIKLFTALV------NGTVAGG----------SISPDEITFIGVICACVRAELLTEG 344
P++G++LF +V N G + PD+ITFIGV+CAC RA LL +
Sbjct: 362 PKDGLELFEEMVGELREINEETGNGKKFKQDEGKRKVFPDQITFIGVLCACARAGLLKDA 421
Query: 345 RKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSL 404
YF +MI+ + ++PNF HYWC+AN+Y L E+A EILR MPEDN++ S ES++W+ L
Sbjct: 422 ENYFDEMINVFLVRPNFGHYWCLANVYVAVGLIEQAVEILRNMPEDNEDFSSESVVWIDL 481
Query: 405 LSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMG 464
L+ CRF G V++ E++AK +DM+P++ S Y+ LLN+YAVAG+WEDV+R++ LMK++ +
Sbjct: 482 LTTCRFVGDVSLGEQIAKYLIDMEPKNDSYYRLLLNIYAVAGRWEDVSRIKLLMKEKDLE 541
Query: 465 RMPGCRLVD 473
R CR+VD
Sbjct: 542 R---CRVVD 547
>gi|356540832|ref|XP_003538888.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At3g51320-like [Glycine max]
Length = 560
Score = 523 bits (1346), Expect = e-145, Method: Compositional matrix adjust.
Identities = 252/482 (52%), Positives = 338/482 (70%), Gaps = 6/482 (1%)
Query: 2 KQLLQIQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKA 61
+ LLQ+QA L+TS LF N F +L ++ + YT+L+F+ IN+ GTFCVN VIK+
Sbjct: 72 RHLLQMQALLVTSSLF-RNPFLARTVLSRASHLCNFAYTLLIFRTINSLGTFCVNTVIKS 130
Query: 62 YSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFE 121
Y NS P + +VFY + + GF PNSYTFV L SCAK GC++ G CH A KNGVD
Sbjct: 131 YCNSHAPREAIVFYFRSLMCGFFPNSYTFVPLVASCAKMGCIDSGKECHAQATKNGVDSV 190
Query: 122 LPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPE 181
LPV NSLI+MY C G + AR +F M RDL+S NSI+ G + G+++AAH L + MP+
Sbjct: 191 LPVQNSLIHMYACCGDVQLARVLFDGMLSRDLVSRNSIIDGIMMVGELNAAHRLLNEMPD 250
Query: 182 RNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSV 241
RN+V+WN+MISGY K NPG ++KLFREM + G RG+ +TM V TACGRS R EG+SV
Sbjct: 251 RNLVTWNVMISGYLKGRNPGYAMKLFREMGRLGLRGDARTMVCVATACGRSGRLKEGKSV 310
Query: 242 HGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKP 301
+G VR ++ ++ILDT LID+Y KC+KVE A+RVF+ M +RNLV WNAMILGHCI G P
Sbjct: 311 YGSIVRMLVRSSLILDTVLIDMYCKCRKVEDARRVFERMGERNLVSWNAMILGHCIRGSP 370
Query: 302 EEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNF 361
E+G+ LF ++ G ++P TFIGV+CAC RAE+L EGR +F+QM D + +KPN+
Sbjct: 371 EDGLGLFDVMI-----GSKVAPXXSTFIGVLCACARAEMLAEGRSFFKQMTDAFGVKPNY 425
Query: 362 AHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLA 421
AH+WCMANL A L EAEE LR + E + +MS ES+ W SLL LC F+ + ER+A
Sbjct: 426 AHFWCMANLLANLGLVGEAEEFLRSIAEFDGDMSRESLAWASLLGLCHFKRDAYLGERIA 485
Query: 422 KSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLKEVVEKL 481
K ++MDP++ + YQFLL +YAV+ QW++V+ V++L+K+RR+G + LVDLK +V
Sbjct: 486 KILIEMDPKNRACYQFLLIIYAVSAQWQNVSGVQKLIKERRLGIIARSSLVDLKNIVHNF 545
Query: 482 KV 483
KV
Sbjct: 546 KV 547
>gi|6562284|emb|CAB62654.1| putative protein [Arabidopsis thaliana]
Length = 486
Score = 482 bits (1240), Expect = e-133, Method: Compositional matrix adjust.
Identities = 222/451 (49%), Positives = 316/451 (70%), Gaps = 30/451 (6%)
Query: 34 FGSPDYTVLVFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSL 93
FG YTV +++ I +C N V KAY S P Q + FY +++ GF+P+SYTFVSL
Sbjct: 44 FGDSSYTVSIYRSIGK--LYCANPVFKAYLVSSSPKQALGFYFDILRFGFVPDSYTFVSL 101
Query: 94 FGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDL 153
KT CV+ G MCHG A+K+G D LPV NSL++MY C GA+D A+ +FV++ RD+
Sbjct: 102 ISCIEKTCCVDSGKMCHGQAIKHGCDQVLPVQNSLMHMYTCCGALDLAKKLFVEIPKRDI 161
Query: 154 ISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKS 213
+SWNSI++G VR+GD+ AAH+LFD MP++N++SWNIMIS Y + NPG S+ LFREM+++
Sbjct: 162 VSWNSIIAGMVRNGDVLAAHKLFDEMPDKNIISWNIMISAYLGANNPGVSISLFREMVRA 221
Query: 214 GFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVA 273
GF+GN+ T+ +L ACGRSAR E ALID+Y KC++V +A
Sbjct: 222 GFQGNESTLVLLLNACGRSARLKE---------------------ALIDMYGKCKEVGLA 260
Query: 274 QRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVIC 333
+R+FDS++ RN V WN MIL HC+HG+PE G++LF A++NG + PDE+TF+GV+C
Sbjct: 261 RRIFDSLSIRNKVTWNVMILAHCLHGRPEGGLELFEAMINGM-----LRPDEVTFVGVLC 315
Query: 334 ACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDN 393
C RA L+++G+ Y+ M+D ++IKPNF H WCMANLY+ A EEAEE L+ +P+ ++
Sbjct: 316 GCARAGLVSQGQSYYSLMVDEFQIKPNFGHQWCMANLYSSAGFPEEAEEALKNLPD--ED 373
Query: 394 MSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVAR 453
++ ES W +LLS RF G + E +AKS ++ DP ++ Y L+N+Y+V G+WEDV R
Sbjct: 374 VTPESTKWANLLSSSRFTGNPTLGESIAKSLIETDPLNYKYYHLLMNIYSVTGRWEDVNR 433
Query: 454 VRELMKKRRMGRMPGCRLVDLKEVVEKLKVG 484
VRE++K+R++GR+PGC LVDLKE+V L++G
Sbjct: 434 VREMVKERKIGRIPGCGLVDLKEIVHGLRLG 464
>gi|255580653|ref|XP_002531149.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223529262|gb|EEF31234.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 311
Score = 384 bits (986), Expect = e-104, Method: Compositional matrix adjust.
Identities = 176/280 (62%), Positives = 219/280 (78%), Gaps = 2/280 (0%)
Query: 101 GCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIV 160
GC++ G CHG LKNGVD LPV NSLI+ YGC G ++ AR +F +MS DL+SWNSIV
Sbjct: 2 GCLQSGQKCHGQVLKNGVDCILPVQNSLIHFYGCCGLVELARKVFDEMSQADLVSWNSIV 61
Query: 161 SGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDK 220
+ + G++ AH++F+IM + VVSWN+MI GY K NPGCSL LFR+M+ SG RGNDK
Sbjct: 62 NAYANVGELDTAHDIFNIMLGKTVVSWNVMIYGYLKGNNPGCSLMLFRKMVNSGLRGNDK 121
Query: 221 TMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSM 280
TM SVL+ACG+SAR EGRS+HG+ +RTSL ++IL T+L+D+YSKCQKVE+A+ +FDSM
Sbjct: 122 TMVSVLSACGKSARLTEGRSIHGFLIRTSLNFSVILLTSLMDMYSKCQKVELARSIFDSM 181
Query: 281 ADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAEL 340
RNL+CWNAMILGHCIHGKP +G+ LF +VN T G +I PDE+T+IGVI AC RA L
Sbjct: 182 VHRNLICWNAMILGHCIHGKPADGLDLFAEMVNST--GETILPDEVTYIGVISACARAGL 239
Query: 341 LTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEA 380
LTEGRK+F QM+D Y IKPNFAHYWCMANLYAG + +A
Sbjct: 240 LTEGRKFFSQMMDKYTIKPNFAHYWCMANLYAGCNIASDA 279
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 57/241 (23%), Positives = 101/241 (41%), Gaps = 35/241 (14%)
Query: 32 ADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFV 91
A+ G D +F + N +I Y P ++ + +M+ +G N T V
Sbjct: 65 ANVGELDTAHDIFNIMLGKTVVSWNVMIYGYLKGNNPGCSLMLFRKMVNSGLRGNDKTMV 124
Query: 92 SLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPR 151
S+ +C K+ + G HG ++ ++F + ++ SL++MY ++ AR++F M R
Sbjct: 125 SVLSACGKSARLTEGRSIHGFLIRTSLNFSVILLTSLMDMYSKCQKVELARSIFDSMVHR 184
Query: 152 DLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMM 211
+LI WN+++ GH G P L LF EM+
Sbjct: 185 NLICWNAMILGHC-------------------------------IHGKPADGLDLFAEMV 213
Query: 212 KS---GFRGNDKTMASVLTACGRSARFNEGRSVHGYTV-RTSLKPNIILDTALIDLYSKC 267
S ++ T V++AC R+ EGR + + ++KPN + +LY+ C
Sbjct: 214 NSTGETILPDEVTYIGVISACARAGLLTEGRKFFSQMMDKYTIKPNFAHYWCMANLYAGC 273
Query: 268 Q 268
Sbjct: 274 N 274
>gi|222629911|gb|EEE62043.1| hypothetical protein OsJ_16825 [Oryza sativa Japonica Group]
Length = 553
Score = 327 bits (838), Expect = 1e-86, Method: Compositional matrix adjust.
Identities = 163/376 (43%), Positives = 235/376 (62%), Gaps = 9/376 (2%)
Query: 110 HGLALKNGVDFELPV--MNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSG 167
H L+ G+ F P+ N+L++ Y + CARN+F +M RD+ S+N++++ + +
Sbjct: 149 HAQLLRRGLLFSPPLHAANALLHFYAAATLLPCARNLFDEMPFRDVASYNTMMTAYAGAV 208
Query: 168 D-MSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVL 226
D + AA LFD M RNVVSWNIMI+GY K P +L++ R M + G RG M
Sbjct: 209 DGIDAARHLFDGMLLRNVVSWNIMINGYVKVKRPEQALEVVRWMAEIGVRGTAVAMVGAA 268
Query: 227 TACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLV 286
TAC R R G+ VH +R + N++ TAL+D+Y KC+ + A++VFD ++ RN+V
Sbjct: 269 TACARLGRLGAGKEVHCAFLRRFEERNLLFSTALVDMYGKCRNADAARKVFDRLSFRNVV 328
Query: 287 CWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRK 346
CWNAMI+GHC++G+P +GI+LF ++ G + PDE+TFIGV+CAC R LL +G+
Sbjct: 329 CWNAMIIGHCVYGEPGDGIRLFHDMIGQDDQHG-LLPDEVTFIGVLCACTRLALLDDGKA 387
Query: 347 YFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLS 406
YF QM Y IKP FAHYWCMANLYA L EEAE +L MPE+ ++ LL
Sbjct: 388 YFEQMSTMYNIKPTFAHYWCMANLYASVGLLEEAEGLLTSMPEE-----LKAHALGGLLG 442
Query: 407 LCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRM 466
LCRF+G + ER+ ++++P + Y L NVYA AG+WEDV RV+ ++K+R
Sbjct: 443 LCRFRGEWELGERIVLRLIELEPNNSVHYALLCNVYASAGRWEDVHRVKAIIKERDEKLS 502
Query: 467 PGCRLVDLKEVVEKLK 482
PG RLV+L E++ + +
Sbjct: 503 PGHRLVNLNEILHQFR 518
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 61/284 (21%), Positives = 114/284 (40%), Gaps = 44/284 (15%)
Query: 56 NAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALK 115
N +I Y P+Q + M + G + V +CA+ G + G H L+
Sbjct: 230 NIMINGYVKVKRPEQALEVVRWMAEIGVRGTAVAMVGAATACARLGRLGAGKEVHCAFLR 289
Query: 116 NGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHEL 175
+ L +L++MYG D AR +F ++S R+++ WN+++ GH G+
Sbjct: 290 RFEERNLLFSTALVDMYGKCRNADAARKVFDRLSFRNVVCWNAMIIGHCVYGE------- 342
Query: 176 FDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMM----KSGFRGNDKTMASVLTACGR 231
PG ++LF +M+ + G ++ T VL AC R
Sbjct: 343 ------------------------PGDGIRLFHDMIGQDDQHGLLPDEVTFIGVLCACTR 378
Query: 232 SARFNEGRS-VHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNA 290
A ++G++ + ++KP + +LY+ +E A+ + SM +
Sbjct: 379 LALLDDGKAYFEQMSTMYNIKPTFAHYWCMANLYASVGLLEEAEGLLTSMPEELKAHALG 438
Query: 291 MILGHC-IHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVIC 333
+LG C G+ E G ++ L+ + P+ ++C
Sbjct: 439 GLLGLCRFRGEWELGERIVLRLI-------ELEPNNSVHYALLC 475
>gi|297740547|emb|CBI30729.3| unnamed protein product [Vitis vinifera]
Length = 506
Score = 325 bits (833), Expect = 3e-86, Method: Compositional matrix adjust.
Identities = 172/489 (35%), Positives = 276/489 (56%), Gaps = 17/489 (3%)
Query: 1 MKQLLQIQAHLITSGLF---FNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNA 57
+ +L Q AH++ SGL F S ++ +S P Y +F I NP ++ N
Sbjct: 20 ISELHQAHAHILKSGLIHSTFAASRLIASVSTNSHAQAIP-YAHSIFSRIPNPNSYMWNT 78
Query: 58 VIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNG 117
+I+AY+NS P+ + + QM+ +P+ YTF SC VE G HG LK G
Sbjct: 79 IIRAYANSPTPEAALTIFHQMLHASVLPDKYTFTFALKSCGSFSGVEEGRQIHGHVLKTG 138
Query: 118 VDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMS-AAHELF 176
+ +L + N+LI++Y G ++ AR++ +M RD++SWN+++S + G M A+ +F
Sbjct: 139 LGDDLFIQNTLIHLYASCGCIEDARHLLDRMLERDVVSWNALLSAYAERGLMELASRRVF 198
Query: 177 DIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFN 236
P +NVVSWN MI+GYS +G L LF +M +G + ++ T+ SVL+AC +
Sbjct: 199 GETPVKNVVSWNAMITGYSHAGRFSEVLVLFEDMQHAGVKPDNCTLVSVLSACAHVGALS 258
Query: 237 EGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHC 296
+G VH Y + + + + TAL+D+YSKC +E A VF+S +++ WN++I G
Sbjct: 259 QGEWVHAYIDKNGISIDGFVATALVDMYSKCGSIEKALEVFNSCLRKDISTWNSIISGLS 318
Query: 297 IHGKPEEGIKLFTA-LVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFY 355
HG + +++F+ LV G P+E+TF+ V+ AC RA LL EGR+ F M+ +
Sbjct: 319 THGSGQHALQIFSEMLVEG------FKPNEVTFVCVLSACSRAGLLDEGREMFNLMVHVH 372
Query: 356 KIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVA 415
I+P HY CM +L L EEAEE+++KMP+ S++W SLL CR G V
Sbjct: 373 GIQPTIEHYGCMVDLLGRVGLLEEAEELVQKMPQKE-----ASVVWESLLGACRNHGNVE 427
Query: 416 MVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLK 475
+ ER+A+ +++ PQ+ S + L N+YA G+W+DV VR+ M+ + + + PGC ++++
Sbjct: 428 LAERVAQKLLELSPQESSSFVQLSNMYASMGRWKDVMEVRQKMRAQGVRKDPGCSMIEVD 487
Query: 476 EVVEKLKVG 484
V + G
Sbjct: 488 GTVYEFLAG 496
>gi|225438894|ref|XP_002279137.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
chloroplastic-like [Vitis vinifera]
Length = 628
Score = 322 bits (824), Expect = 4e-85, Method: Compositional matrix adjust.
Identities = 175/504 (34%), Positives = 281/504 (55%), Gaps = 24/504 (4%)
Query: 1 MKQLLQIQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIK 60
+ LLQI A L GL ++ L + A G DY+V +F NP F A+I
Sbjct: 43 ISHLLQIHAVLFRHGLD-HHPILNFKLQRSYASLGRLDYSVALFGRTQNPSVFFWTAIIH 101
Query: 61 AYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDF 120
++ + +Q + FY QM+ G PN++TF S+ C +E G H A+K G D
Sbjct: 102 GHALRGLHEQALNFYAQMLTQGVEPNAFTFSSILKLCP----IEPGKALHSQAVKLGFDS 157
Query: 121 ELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMP 180
+L V L+++Y G + A+ +F M + L+S ++++ + + G++ AA LFD M
Sbjct: 158 DLYVRTGLLDVYARGGDVVSAQQLFDTMPEKSLVSLTAMLTCYAKHGELDAARVLFDGME 217
Query: 181 ERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRS 240
ER+ V WN+MI GY+++G P +L LFR M+K+ + N+ T+ SVL+ACG+ GR
Sbjct: 218 ERDGVCWNVMIDGYTQNGMPNEALVLFRRMLKAKAKPNEVTVLSVLSACGQLGALESGRW 277
Query: 241 VHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGK 300
VH Y ++ N+ + TAL+D+YSKC +E A+ VFD + D+++V WN+MI+G+ +HG
Sbjct: 278 VHSYIENNGIQFNVHVGTALVDMYSKCGSLEDARLVFDKIDDKDVVAWNSMIVGYAMHGF 337
Query: 301 PEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPN 360
+E ++LF ++ + P ITFIG++ AC + +TEG F +M D Y I+P
Sbjct: 338 SQEALQLFKSMCR-----MGLHPTNITFIGILSACGHSGWVTEGWDIFNKMKDEYGIEPK 392
Query: 361 FAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERL 420
HY CM NL A E+A E+++ M N+ + ++W +LL CR G +A+ E++
Sbjct: 393 IEHYGCMVNLLGRAGHVEQAYELVKNM-----NIEPDPVLWGTLLGACRLHGKIALGEKI 447
Query: 421 AKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLKEVVEK 480
+ VD + + Y L N+YA G W+ VAR+R +MK + + PGC +++
Sbjct: 448 VELLVDQNLANSGTYILLSNIYAAVGNWDGVARLRTMMKDSGVKKEPGCSSIEVNN---- 503
Query: 481 LKVGHFWRGGM----KEEVNKMME 500
KV F GG+ ++E+ M+E
Sbjct: 504 -KVHEFLAGGLNHPKRKEIYMMLE 526
>gi|449448280|ref|XP_004141894.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
chloroplastic-like [Cucumis sativus]
gi|449513125|ref|XP_004164238.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
chloroplastic-like [Cucumis sativus]
Length = 645
Score = 322 bits (824), Expect = 4e-85, Method: Compositional matrix adjust.
Identities = 179/506 (35%), Positives = 281/506 (55%), Gaps = 21/506 (4%)
Query: 3 QLLQIQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAY 62
LLQI A L+ GL+ +N L + A G D +V VF + P F +A+I ++
Sbjct: 62 HLLQIHASLLRRGLY-HNPILNFKLQRSYAALGRLDCSVFVFNTFDEPNVFSFSAIIHSH 120
Query: 63 SNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFEL 122
S + D+ +Y QM+ G PN++TF S+ SC+ +E G + H A+K G+ +L
Sbjct: 121 VQSRLFDRAFGYYSQMLSCGVEPNAFTFSSVLKSCS----LESGKVLHCQAIKLGLGSDL 176
Query: 123 PVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPER 182
V L+++Y G + CAR +F +M R L+S ++++ + + G++ A LF+ M ER
Sbjct: 177 YVRTGLVDVYARGGDVVCARQLFDKMPERSLVSLTTMLTCYSKMGELDKARSLFEGMKER 236
Query: 183 NVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVH 242
+VV WN+MI GY++SG P SLKLFR M+ + N+ T+ +VL+ACG+ GR +H
Sbjct: 237 DVVCWNVMIGGYAQSGVPNESLKLFRRMLVAKAIPNEVTVLAVLSACGQLGALESGRWIH 296
Query: 243 GYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPE 302
Y ++ N+ + TALID+YSKC +E A+ VFD + D+++V WN+MI+G+ +HG +
Sbjct: 297 SYIENKGIQINVHVGTALIDMYSKCGSLEDARLVFDRIRDKDVVAWNSMIVGYAMHGFSQ 356
Query: 303 EGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFA 362
++LF + T G P +ITFIG++ AC L+ EGR +FR M D Y I+P
Sbjct: 357 HALQLFEEM---TETGH--KPTDITFIGILSACGHGGLVEEGRSFFRLMRDKYGIEPKIE 411
Query: 363 HYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAK 422
HY CM NL A EEA +++ M ++ + ++W +LL CR + + E +AK
Sbjct: 412 HYGCMVNLLGRAGHLEEAYGLVKNM-----TIAADPVLWGTLLGCCRLHVNIKLGEEIAK 466
Query: 423 SFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLKEVVEKLK 482
VD + Y L N+YA G WE VA++R LMK+ + + GC +++ V +
Sbjct: 467 FLVDQKLANSGTYVLLSNMYAATGNWEGVAKMRTLMKEHGIEKEHGCSSIEVDNKVHEFV 526
Query: 483 VGHFWRGGMKE------EVNKMMECR 502
G KE E+N ++ R
Sbjct: 527 AGERKHPKSKEIYVMLNEINSWLKAR 552
>gi|225443714|ref|XP_002265079.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g18840-like [Vitis vinifera]
Length = 536
Score = 318 bits (816), Expect = 3e-84, Method: Compositional matrix adjust.
Identities = 176/519 (33%), Positives = 277/519 (53%), Gaps = 47/519 (9%)
Query: 1 MKQLLQIQAHLITSGLF---FNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNA 57
+ +L Q AH++ SGL F S ++ +S P Y +F I NP ++ N
Sbjct: 20 ISELHQAHAHILKSGLIHSTFAASRLIASVSTNSHAQAIP-YAHSIFSRIPNPNSYMWNT 78
Query: 58 VIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNG 117
+I+AY+NS P+ + + QM+ +P+ YTF SC VE G HG LK G
Sbjct: 79 IIRAYANSPTPEAALTIFHQMLHASVLPDKYTFTFALKSCGSFSGVEEGRQIHGHVLKTG 138
Query: 118 VDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFD 177
+ +L + N+LI++Y G ++ AR++ +M RD++SWN+++S + G M A LFD
Sbjct: 139 LGDDLFIQNTLIHLYASCGCIEDARHLLDRMLERDVVSWNALLSAYAERGLMELACHLFD 198
Query: 178 IMPERNV-------------------------------VSWNIMISGYSKSGNPGCSLKL 206
M ERNV VSWN MI+GYS +G L L
Sbjct: 199 EMTERNVESWNFMISGYVGVGLLEEARRVFGETPVKNVVSWNAMITGYSHAGRFSEVLVL 258
Query: 207 FREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSK 266
F +M +G + ++ T+ SVL+AC ++G VH Y + + + + TAL+D+YSK
Sbjct: 259 FEDMQHAGVKPDNCTLVSVLSACAHVGALSQGEWVHAYIDKNGISIDGFVATALVDMYSK 318
Query: 267 CQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTA-LVNGTVAGGSISPDE 325
C +E A VF+S +++ WN++I G HG + +++F+ LV G P+E
Sbjct: 319 CGSIEKALEVFNSCLRKDISTWNSIISGLSTHGSGQHALQIFSEMLVEG------FKPNE 372
Query: 326 ITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILR 385
+TF+ V+ AC RA LL EGR+ F M+ + I+P HY CM +L L EEAEE+++
Sbjct: 373 VTFVCVLSACSRAGLLDEGREMFNLMVHVHGIQPTIEHYGCMVDLLGRVGLLEEAEELVQ 432
Query: 386 KMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVA 445
KMP+ S++W SLL CR G V + ER+A+ +++ PQ+ S + L N+YA
Sbjct: 433 KMPQKE-----ASVVWESLLGACRNHGNVELAERVAQKLLELSPQESSSFVQLSNMYASM 487
Query: 446 GQWEDVARVRELMKKRRMGRMPGCRLVDLKEVVEKLKVG 484
G+W+DV VR+ M+ + + + PGC ++++ V + G
Sbjct: 488 GRWKDVMEVRQKMRAQGVRKDPGCSMIEVDGTVYEFLAG 526
>gi|449526834|ref|XP_004170418.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g48910-like [Cucumis sativus]
Length = 666
Score = 318 bits (814), Expect = 6e-84, Method: Compositional matrix adjust.
Identities = 179/541 (33%), Positives = 293/541 (54%), Gaps = 46/541 (8%)
Query: 1 MKQLLQIQAHLITSGLFFNNSFWTINLLKHSAD--FGSPDYTVLVFKCINNPGTFCVNAV 58
++ L Q+ A ++ SG F + + + LLK A+ F + D+ + VF I NP F N V
Sbjct: 46 LQYLTQLHALVLRSG-HFQDHYVSGALLKCYANPHFSNFDFALKVFSSIPNPNVFIWNIV 104
Query: 59 IKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGV 118
IK + + + FY +M+ + PN +T+ +LF +C+ V+ G HG +K+G+
Sbjct: 105 IKGCLENNKLFKAIYFYGRMVIDA-RPNKFTYPTLFKACSVAQAVQEGRQIHGHVVKHGI 163
Query: 119 DFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDI 178
++ + ++ I MY FG ++ AR MF D++ WN+++ G+++ G + AA LF
Sbjct: 164 GSDVHIKSAGIQMYASFGRLEDARKMFYS-GESDVVCWNTMIDGYLKCGVLEAAKGLFAQ 222
Query: 179 MPERNVVSWNIMISGYSKSGNPGCSLKLFREM----------MKSGF------------- 215
MP +N+ SWN+MI+G +K GN G + KLF EM M G+
Sbjct: 223 MPVKNIGSWNVMINGLAKGGNLGDARKLFDEMSERDEISWSSMVDGYISAGRYKEALEIF 282
Query: 216 --------RGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKC 267
R ++SVL AC ++GR VH Y R S+K + +L TAL+D+Y+KC
Sbjct: 283 QQMQREETRPGRFILSSVLAACSNIGAIDQGRWVHAYLKRNSIKLDAVLGTALLDMYAKC 342
Query: 268 QKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEIT 327
++++ VF+ M +R + WNAMI G IHG+ E+ ++LF+ L G + P+ IT
Sbjct: 343 GRLDMGWEVFEEMKEREIFTWNAMIGGLAIHGRAEDALELFSKLQE-----GRMKPNGIT 397
Query: 328 FIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKM 387
+GV+ AC A + +G + F+ M +FY + P HY CM +L + L EAE+++ M
Sbjct: 398 LVGVLTACAHAGFVDKGLRIFQTMREFYGVDPELEHYGCMVDLLGRSGLFSEAEDLINSM 457
Query: 388 PEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQ 447
P M + +W +LL CR G + ER+ K ++++PQ+ RY L N+YA G+
Sbjct: 458 P-----MKPNAAVWGALLGACRIHGNFDLAERVGKILLELEPQNSGRYVLLSNIYAKVGR 512
Query: 448 WEDVARVRELMKKRRMGRMPGCRLVDLKEVVEKLKVGHFWRGGMKEEVNKMMECRQSRSL 507
++DV+++R+LMK R + +PG +VDL V + K+G MKE K+ ++ +
Sbjct: 513 FDDVSKIRKLMKNRGIKTVPGVSIVDLNGTVHEFKMGDGSHPQMKEIYRKLKIIKERLQM 572
Query: 508 A 508
A
Sbjct: 573 A 573
>gi|224138230|ref|XP_002322762.1| predicted protein [Populus trichocarpa]
gi|222867392|gb|EEF04523.1| predicted protein [Populus trichocarpa]
Length = 617
Score = 317 bits (812), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 160/484 (33%), Positives = 266/484 (54%), Gaps = 11/484 (2%)
Query: 1 MKQLLQIQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIK 60
+ L I AHLI + F+ F L+ S + DY VF I NP F N+ I+
Sbjct: 28 LSHLKIIHAHLIRAHTIFD-VFAASCLISISINKNLLDYAAQVFYQIQNPNLFIYNSFIR 86
Query: 61 AYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDF 120
+S S PD+ FY+Q +NG +P++ T+ L +C + G ++ G HG +++G D
Sbjct: 87 GFSGSKDPDKSFHFYVQSKRNGLVPDNLTYPFLVKACTQKGSLDMGIQAHGQIIRHGFDS 146
Query: 121 ELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMP 180
++ V NSL+ MY G + A +F ++S D++SW S+V+G+++SGD+++A +LFD MP
Sbjct: 147 DVYVQNSLVTMYSTLGDIKSASYVFRRISCLDVVSWTSMVAGYIKSGDVTSARKLFDKMP 206
Query: 181 ERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRS 240
E+N+V+W++MISGY+K+ +++L+ + G N+ M SV+ +C G
Sbjct: 207 EKNLVTWSVMISGYAKNSFFDKAIELYFLLQSEGVHANETVMVSVIASCAHLGALELGER 266
Query: 241 VHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGK 300
H Y +R + N+IL TAL+D+Y++C ++ A VFD + R+ + W +I G +HG
Sbjct: 267 AHDYILRNKMTVNLILGTALVDMYARCGSIDKAIWVFDQLPGRDALSWTTLIAGFAMHGY 326
Query: 301 PEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPN 360
E+ ++ F+ + ++P EITF V+ AC L+ G + F M Y+I+P
Sbjct: 327 AEKALEYFSRM-----EKAGLTPREITFTAVLSACSHGGLVERGLELFESMKRDYRIEPR 381
Query: 361 FAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERL 420
HY CM +L A EAE+ + +MP M + +W +LL CR + ER
Sbjct: 382 LEHYGCMVDLLGRAGKLAEAEKFVNEMP-----MKPNAPIWGALLGACRIHKNSEIAERA 436
Query: 421 AKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLKEVVEK 480
K+ +++ P+ Y L N+YA +WE+V +R++MK+R + + PG L ++ V K
Sbjct: 437 GKTLIELKPEHSGYYVLLSNIYARTNKWENVENIRQMMKERGVVKPPGYTLFEMDGKVHK 496
Query: 481 LKVG 484
+G
Sbjct: 497 FTIG 500
>gi|225439325|ref|XP_002267596.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g06540-like [Vitis vinifera]
Length = 623
Score = 316 bits (810), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 155/447 (34%), Positives = 249/447 (55%), Gaps = 10/447 (2%)
Query: 38 DYTVLVFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSC 97
DY +F I NP F NA+I+ +S S PDQ FY+Q + G +P++ TF L SC
Sbjct: 70 DYASRIFSQIQNPNLFIFNAMIRGHSGSKNPDQAFHFYVQSQRQGLLPDNLTFPFLVKSC 129
Query: 98 AKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWN 157
K C+ G HG +K+G + ++ V NSL++MY FG + A +F +M D++SW
Sbjct: 130 TKLHCISMGSQAHGHIIKHGFEKDVYVQNSLVHMYATFGDTEAATLIFQRMYYVDVVSWT 189
Query: 158 SIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRG 217
S++ G + GD+ +A +LFD MPE+N+V+W+ MISGY+++ + +++LF+ + G R
Sbjct: 190 SMIRGFNKCGDVESARKLFDQMPEKNLVTWSTMISGYAQNNHFDKAVELFKVLQSQGVRA 249
Query: 218 NDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVF 277
N+ M SV+++C G H Y V+ + N+IL TAL+D+Y++C ++ A VF
Sbjct: 250 NETVMVSVISSCAHLGALELGERAHDYVVKNGMTLNLILGTALVDMYARCGSIDKAVWVF 309
Query: 278 DSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVR 337
+ + +R+ + W A+I G +HG E +K F +V ++P +ITF V+ AC
Sbjct: 310 EDLPERDTLSWTALIAGLAMHGYSERSLKYFATMVE-----AGLTPRDITFTAVLSACSH 364
Query: 338 AELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFE 397
L+ G + F M ++++P HY CM +L A EEAE + KMP +
Sbjct: 365 GGLVERGFQIFESMKRDHRVEPRLEHYGCMVDLLGRAGKLEEAERFVLKMP-----VKPN 419
Query: 398 SIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVREL 457
+ +W +LL CR + ER+ K + + PQ Y L N+YA A +WE V +R++
Sbjct: 420 APVWGALLGACRIHKNAEIGERVGKILIQLLPQHSGYYVLLSNIYANAKEWEKVTEMRQM 479
Query: 458 MKKRRMGRMPGCRLVDLKEVVEKLKVG 484
MK + + + PG L++L V K +G
Sbjct: 480 MKAKGLKKPPGHSLIELDGRVHKFTIG 506
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 47/225 (20%), Positives = 96/225 (42%), Gaps = 19/225 (8%)
Query: 241 VHGYTVRTSLKPNIILDTALI----DLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHC 296
+H Y +RT + ++ + LI D S ++ A R+F + + NL +NAMI GH
Sbjct: 36 IHAYMIRTHIICDVFAASRLIAFCVDPSSGTSLIDYASRIFSQIQNPNLFIFNAMIRGHS 95
Query: 297 IHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYK 356
P++ + V G + PD +TF ++ +C + ++ G + +I
Sbjct: 96 GSKNPDQAFHFY---VQSQRQG--LLPDNLTFPFLVKSCTKLHCISMGSQAHGHIIKHGF 150
Query: 357 IKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAM 416
K + + ++YA TE A I ++M + + W S++ R
Sbjct: 151 EKDVYVQN-SLVHMYATFGDTEAATLIFQRM------YYVDVVSWTSMI---RGFNKCGD 200
Query: 417 VERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKR 461
VE K F M ++ + +++ YA ++ + ++++ +
Sbjct: 201 VESARKLFDQMPEKNLVTWSTMISGYAQNNHFDKAVELFKVLQSQ 245
Score = 48.1 bits (113), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 51/241 (21%), Positives = 106/241 (43%), Gaps = 14/241 (5%)
Query: 10 HLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSNSCVPD 69
+++ +G+ N T L+ A GS D V VF+ + T A+I + +
Sbjct: 276 YVVKNGMTLNLILGTA-LVDMYARCGSIDKAVWVFEDLPERDTLSWTALIAGLAMHGYSE 334
Query: 70 QGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERG-GMCHGLALKNGVDFELPVMNSL 128
+ + ++ M++ G P TF ++ +C+ G VERG + + + V+ L +
Sbjct: 335 RSLKYFATMVEAGLTPRDITFTAVLSACSHGGLVERGFQIFESMKRDHRVEPRLEHYGCM 394
Query: 129 INMYGCFGAMDCARNMFVQMSPR-DLISWNSIVSGHVRSGDMSAAHE-----LFDIMPER 182
+++ G G ++ A ++M + + W +++ G R + E L ++P+
Sbjct: 395 VDLLGRAGKLEEAERFVLKMPVKPNAPVWGALL-GACRIHKNAEIGERVGKILIQLLPQH 453
Query: 183 NVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMA-SVLTACGRSARFNEGRSV 241
+ + +++S + + R+MMK+ +G K S++ GR +F G S
Sbjct: 454 S--GYYVLLSNIYANAKEWEKVTEMRQMMKA--KGLKKPPGHSLIELDGRVHKFTIGDSS 509
Query: 242 H 242
H
Sbjct: 510 H 510
>gi|449435966|ref|XP_004135765.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g48910-like [Cucumis sativus]
Length = 666
Score = 316 bits (810), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 178/541 (32%), Positives = 293/541 (54%), Gaps = 46/541 (8%)
Query: 1 MKQLLQIQAHLITSGLFFNNSFWTINLLKHSAD--FGSPDYTVLVFKCINNPGTFCVNAV 58
++ L Q+ ++ SG F + + + LLK A+ F + D+ + VF I NP F N V
Sbjct: 46 LQYLTQLHGLVLRSG-HFQDHYVSGALLKCYANPHFSNFDFALKVFSSIPNPNVFIWNIV 104
Query: 59 IKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGV 118
IK + + + FY +M+ + PN +T+ +LF +C+ V+ G HG +K+G+
Sbjct: 105 IKGCLENNKLFKAIYFYGRMVIDA-RPNKFTYPTLFKACSVAQAVQEGRQIHGHVVKHGI 163
Query: 119 DFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDI 178
++ + ++ I+MY FG ++ AR MF D++ WN+++ G+++ G + AA LF
Sbjct: 164 GSDVHIKSAGIHMYASFGRLEDARKMFYS-GESDVVCWNTMIDGYLKCGVLEAAKGLFAQ 222
Query: 179 MPERNVVSWNIMISGYSKSGNPGCSLKLFREM----------MKSGF------------- 215
MP +N+ SWN+MI+G +K GN G + KLF EM M G+
Sbjct: 223 MPVKNIGSWNVMINGLAKGGNLGDARKLFDEMSERDEISWSSMVDGYISAGRYKEALEIF 282
Query: 216 --------RGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKC 267
R ++SVL AC ++GR VH Y R S+K + +L TAL+D+Y+KC
Sbjct: 283 QQMQREETRPGRFILSSVLAACSNIGAIDQGRWVHAYLKRNSIKLDAVLGTALLDMYAKC 342
Query: 268 QKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEIT 327
++++ VF+ M +R + WNAMI G IHG+ E+ ++LF+ L G + P+ IT
Sbjct: 343 GRLDMGWEVFEEMKEREIFTWNAMIGGLAIHGRAEDALELFSKLQE-----GRMKPNGIT 397
Query: 328 FIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKM 387
+GV+ AC A + +G + F+ M +FY + P HY CM +L + L EAE+++ M
Sbjct: 398 LVGVLTACAHAGFVDKGLRIFQTMREFYGVDPELEHYGCMVDLLGRSGLFSEAEDLINSM 457
Query: 388 PEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQ 447
P M + +W +LL CR G + ER+ K ++++PQ+ RY L N+YA G+
Sbjct: 458 P-----MKPNAAVWGALLGACRIHGNFDLAERVGKILLELEPQNSGRYVLLSNIYAKVGR 512
Query: 448 WEDVARVRELMKKRRMGRMPGCRLVDLKEVVEKLKVGHFWRGGMKEEVNKMMECRQSRSL 507
++DV+++R+LMK R + +PG +VDL V + K+G MKE K+ ++ +
Sbjct: 513 FDDVSKIRKLMKDRGIKTVPGVSIVDLNGTVHEFKMGDGSHPQMKEIYRKLKIIKERLQM 572
Query: 508 A 508
A
Sbjct: 573 A 573
>gi|242077730|ref|XP_002448801.1| hypothetical protein SORBIDRAFT_06g033530 [Sorghum bicolor]
gi|241939984|gb|EES13129.1| hypothetical protein SORBIDRAFT_06g033530 [Sorghum bicolor]
Length = 553
Score = 314 bits (805), Expect = 7e-83, Method: Compositional matrix adjust.
Identities = 162/377 (42%), Positives = 237/377 (62%), Gaps = 12/377 (3%)
Query: 110 HGLALKNGVDFELP--VMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRS- 166
HG L+ G+ F P N+L++ Y G + AR +F +M RD++S+N++++ +
Sbjct: 150 HGQVLRRGLLFSPPPHAANALLHFYATAGGLSSARYLFDEMPFRDIVSYNTLMTALASTP 209
Query: 167 GDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVL 226
G + AA +LF+ M R+ VSWNIMI+GY K+ P +L++ R M K+G RG M
Sbjct: 210 GGIDAARQLFEGMHLRSAVSWNIMINGYVKAKWPEQALEVVRWMAKAGVRGTAAAMVGAA 269
Query: 227 TACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLV 286
TAC R R G+ VH +R N+++ TALID+Y KC++ VA+++FD + RN+V
Sbjct: 270 TACARLGRLGAGKEVHCVFLRRFEDDNLLVWTALIDMYGKCRRSGVARKLFDRLRMRNVV 329
Query: 287 CWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRK 346
CWNAMI+GHC++G+P +GIKLF ++ G++ PD +TFIGV+CAC R LL +GR
Sbjct: 330 CWNAMIIGHCVYGEPGDGIKLFQHMIT----LGNVQPDGVTFIGVLCACARLGLLEDGRA 385
Query: 347 YFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLS 406
YF QM Y +KP FAHYWC+ANLY L EEAE +L+ +PED + SLL
Sbjct: 386 YFEQMSTVYNLKPTFAHYWCVANLYGSVGLLEEAEGLLQSIPEDMKARALG-----SLLG 440
Query: 407 LCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRM 466
LCRF+ + ER+A ++++P + + Y L NVYA G+WE+V RV+ +MK R
Sbjct: 441 LCRFRKDWRLGERIALRLIELEPSNNAHYALLCNVYAAVGRWEEVHRVKAIMKGRDERFR 500
Query: 467 PGCRLVDLKEVVEKLKV 483
PG RLV+L E+V++ K+
Sbjct: 501 PGHRLVNLNEIVDEFKI 517
Score = 61.6 bits (148), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 58/250 (23%), Positives = 100/250 (40%), Gaps = 33/250 (13%)
Query: 35 GSPDYTVLVFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLF 94
G D +F+ ++ N +I Y + P+Q + M K G + V
Sbjct: 210 GGIDAARQLFEGMHLRSAVSWNIMINGYVKAKWPEQALEVVRWMAKAGVRGTAAAMVGAA 269
Query: 95 GSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLI 154
+CA+ G + G H + L+ D L V +LI+MYG AR +F ++ R+++
Sbjct: 270 TACARLGRLGAGKEVHCVFLRRFEDDNLLVWTALIDMYGKCRRSGVARKLFDRLRMRNVV 329
Query: 155 SWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSG 214
WN+++ GH G+ PG +KLF+ M+ G
Sbjct: 330 CWNAMIIGHCVYGE-------------------------------PGDGIKLFQHMITLG 358
Query: 215 -FRGNDKTMASVLTACGRSARFNEGRS-VHGYTVRTSLKPNIILDTALIDLYSKCQKVEV 272
+ + T VL AC R +GR+ + +LKP + +LY +E
Sbjct: 359 NVQPDGVTFIGVLCACARLGLLEDGRAYFEQMSTVYNLKPTFAHYWCVANLYGSVGLLEE 418
Query: 273 AQRVFDSMAD 282
A+ + S+ +
Sbjct: 419 AEGLLQSIPE 428
>gi|147790932|emb|CAN77232.1| hypothetical protein VITISV_001089 [Vitis vinifera]
Length = 575
Score = 311 bits (798), Expect = 5e-82, Method: Compositional matrix adjust.
Identities = 166/478 (34%), Positives = 269/478 (56%), Gaps = 23/478 (4%)
Query: 27 LLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPN 86
L + A G DY+V +F NP F A+I ++ + +Q + FY QM+ G PN
Sbjct: 15 LQRSYASLGRLDYSVALFGRTQNPSVFFWTAIIHGHALRGLHEQALNFYAQMLTQGVEPN 74
Query: 87 SYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFV 146
++TF S+ C +E G H A+K G D +L V L+++Y G + A+ +F
Sbjct: 75 AFTFSSILKLCP----IEPGKALHSQAVKLGFDSDLYVRTGLLDVYARGGDVVSAQQLFD 130
Query: 147 QMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKL 206
M + L+S ++++ + + G++ AA LFD M ER+ V WN+MI GY+++G P +L L
Sbjct: 131 TMPEKSLVSLTAMLTCYAKHGELDAARVLFDGMEERDGVCWNVMIDGYTQNGMPNEALVL 190
Query: 207 FREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSK 266
FR M+K+ + N+ T+ SVL+ACG+ GR VH Y ++ N+ + TAL+D+YSK
Sbjct: 191 FRRMLKAKAKPNEVTVLSVLSACGQLGALESGRWVHSYIENNGIQFNVHVGTALVDMYSK 250
Query: 267 CQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEI 326
C +E A+ VFD + D+++V WN+MI+G+ + G +E ++LF ++ + P I
Sbjct: 251 CGSLEDARLVFDKIDDKDVVAWNSMIVGYAMXGFSQEALQLFKSMCR-----MGLHPTNI 305
Query: 327 TFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRK 386
TFIG++ AC + +TEG F +M D Y I+P HY CM NL A E+A E+++
Sbjct: 306 TFIGILSACGHSGWVTEGWDIFNKMKDEYGIEPKIEHYGCMVNLLGRAGHVEQAYELVKN 365
Query: 387 MPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAG 446
M N+ + ++W +LL CR G +A+ E++ + VD + + Y L N+YA G
Sbjct: 366 M-----NIEPDPVLWGTLLGACRLHGKIALGEKIVELLVDQNLANSGTYILLSNIYAAVG 420
Query: 447 QWEDVARVRELMKKRRMGRMPGCRLVDLKEVVEKLKVGHFWRGGM----KEEVNKMME 500
W+ VAR+R +MK + + PGC +++ KV F GG+ ++E+ M+E
Sbjct: 421 NWDGVARLRTMMKDSGVKKEPGCSSIEVNN-----KVHEFLAGGLNHPKRKEIYMMLE 473
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 65/307 (21%), Positives = 123/307 (40%), Gaps = 73/307 (23%)
Query: 125 MNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNV 184
++ L Y G +D + +F + + W +I+ GH G HE
Sbjct: 12 LDKLQRSYASLGRLDYSVALFGRTQNPSVFFWTAIIHGHALRG----LHEQ--------- 58
Query: 185 VSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGY 244
+L + +M+ G N T +S+L C G+++H
Sbjct: 59 ------------------ALNFYAQMLTQGVEPNAFTFSSILKLC----PIEPGKALHSQ 96
Query: 245 TVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNL------------------- 285
V+ ++ + T L+D+Y++ V AQ++FD+M +++L
Sbjct: 97 AVKLGFDSDLYVRTGLLDVYARGGDVVSAQQLFDTMPEKSLVSLTAMLTCYAKHGELDAA 156
Query: 286 ------------VCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVIC 333
VCWN MI G+ +G P E + LF ++ P+E+T + V+
Sbjct: 157 RVLFDGMEERDGVCWNVMIDGYTQNGMPNEALVLFRRMLKAKA-----KPNEVTVLSVLS 211
Query: 334 ACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDN 393
AC + L GR + I+ I+ N + ++Y+ E+A + K+ +D D
Sbjct: 212 ACGQLGALESGR-WVHSYIENNGIQFNVHVGTALVDMYSKCGSLEDARLVFDKI-DDKDV 269
Query: 394 MSFESIM 400
+++ S++
Sbjct: 270 VAWNSMI 276
>gi|225425100|ref|XP_002272744.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Vitis vinifera]
Length = 622
Score = 310 bits (795), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 164/502 (32%), Positives = 271/502 (53%), Gaps = 14/502 (2%)
Query: 1 MKQLLQIQAHLITSGLFFNNSFWTINLLKH--SADFGSPDYTVLVFKCINNPGTFCVNAV 58
M++L QI ++ +GL + LL S + GS Y VF I P TF N +
Sbjct: 31 MEELRQIHGQMLKTGLILDE-IPASKLLAFCASPNSGSLAYARTVFDRIFRPNTFMWNTM 89
Query: 59 IKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGV 118
I+ YSNS P++ ++ Y M+ + N+YTF L +C+ +E H +K G
Sbjct: 90 IRGYSNSKEPEEALLLYHHMLYHSVPHNAYTFPFLLKACSSMSALEETQQIHAHIIKMGF 149
Query: 119 DFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDI 178
E+ NSL+N+Y G + AR +F Q+ RD +SWNS++ G+ + G++ A+E+F+
Sbjct: 150 GSEIYTTNSLLNVYSKSGDIKSARLLFDQVDQRDTVSWNSMIDGYTKCGEIEMAYEIFNH 209
Query: 179 MPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEG 238
MPERN++SW MISG +G P +L LF M +G + ++ + S L AC ++G
Sbjct: 210 MPERNIISWTSMISGCVGAGKPKEALNLFHRMQTAGIKLDNVALVSTLQACADLGVLDQG 269
Query: 239 RSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIH 298
+ +H Y + ++ + IL LID+Y+KC +E A VF M ++ + W AMI G+ IH
Sbjct: 270 KWIHAYIKKHEIEIDPILGCVLIDMYAKCGDLEEAIEVFRKMEEKGVSVWTAMISGYAIH 329
Query: 299 GKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIK 358
G+ E ++ F + AG + P+++TF G++ AC A L+ E + F M + K
Sbjct: 330 GRGREALEWFMKM---QTAG--VEPNQMTFTGILTACSHAGLVHEAKLLFESMERIHGFK 384
Query: 359 PNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVE 418
P+ HY CM +L A L +EAEE++ MP + + +W +LL+ C G + + +
Sbjct: 385 PSIEHYGCMVDLLGRAGLLKEAEELIENMP-----VKPNAAIWGALLNACHIHGNLELGK 439
Query: 419 RLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLKEVV 478
++ K + +DP RY L +++A AG+W ARVR MK++ + ++PGC ++ +
Sbjct: 440 QIGKILIQVDPGHGGRYIHLASIHAAAGEWNQAARVRRQMKEQGVSKLPGCSVISVNGTA 499
Query: 479 EKLKVGHFWRGGMKEEVNKMME 500
+ G +K E++ M+E
Sbjct: 500 HEFLAGDESHPQIK-EIDHMLE 520
>gi|225447043|ref|XP_002269269.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Vitis vinifera]
Length = 640
Score = 310 bits (793), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 162/487 (33%), Positives = 270/487 (55%), Gaps = 14/487 (2%)
Query: 1 MKQLLQIQAHLITSGLFFNNSFWTINLLKHSA--DFGSPDYTVLVFKCINNPGTFCVNAV 58
+K L QI A IT+G+F +N F +L +A GS Y +F I P F N +
Sbjct: 48 LKDLTQIHAQTITTGIFSDN-FVASRILSFAALSPHGSIPYARFLFYRIRKPDIFIANTL 106
Query: 59 IKAYSNSCVPDQGVVFYLQMIKNGFM-PNSYTFVSLFGSCAKTGCVERGGMCHGLALKNG 117
I+AY+ S P VVFY +M ++ + P+ +TF L +C++ + G H K G
Sbjct: 107 IRAYAFSPNPIDAVVFYSEMTESSVVFPDVHTFPLLLKACSEIPSLRLGEAIHSHVFKLG 166
Query: 118 VDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFD 177
E+ V N L+ MY G ++ A +F + D SWN ++ G+++ G +A +F+
Sbjct: 167 WSSEVSVSNFLVQMYASCGLIESAGLVFDRTPECDGASWNIMIGGYLKCGVFKSARRMFE 226
Query: 178 IMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNE 237
MP+R+VVSW++MI+GY + L LF++MM N+ + + L+AC +
Sbjct: 227 AMPDRDVVSWSVMINGYVQESRFKEGLGLFQDMMGEKIEPNESVLVNALSACAHLGAMEQ 286
Query: 238 GRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCI 297
G+ + Y R +++ + L TALID+YSKC VE A VF M ++N++ W+AMI G I
Sbjct: 287 GQWIERYMERKNVRLTVRLGTALIDMYSKCGSVERALEVFHKMKEKNVLAWSAMINGLAI 346
Query: 298 HGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKI 357
+G+ ++ + LF+ + + P+E+TFIG++ AC ++L+ EG +F M Y +
Sbjct: 347 NGQGKDALNLFSQM-----EMQGVKPNEVTFIGILNACSHSKLVDEGCSFFHSMTSIYGL 401
Query: 358 KPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMV 417
KPN H+ CM +LY A + ++A+ +++ MP S +W +LL+ CR G +
Sbjct: 402 KPNAHHHCCMVDLYGRAGMLDQAQTVIKSMP-----FKPNSAIWGALLNACRIHGDTELG 456
Query: 418 ERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLKEV 477
E++ K +++DP RY L N+YA G+W+ VA +R +M++R++ + PGC +DL +
Sbjct: 457 EQVGKRLLELDPNHGGRYVLLSNIYAACGRWDRVAELRRMMRERQVSKTPGCSFIDLGDT 516
Query: 478 VEKLKVG 484
+ + G
Sbjct: 517 IHEFVAG 523
>gi|147832325|emb|CAN66581.1| hypothetical protein VITISV_030261 [Vitis vinifera]
Length = 622
Score = 309 bits (792), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 164/502 (32%), Positives = 270/502 (53%), Gaps = 14/502 (2%)
Query: 1 MKQLLQIQAHLITSGLFFNNSFWTINLLKH--SADFGSPDYTVLVFKCINNPGTFCVNAV 58
M++L QI ++ +GL + LL S + GS Y VF I P TF N +
Sbjct: 31 MEELRQIHGQMLKTGLILDE-IPASKLLAFCASPNSGSLAYARTVFDRIFRPNTFMWNTM 89
Query: 59 IKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGV 118
I+ YSNS P++ ++ Y M+ + N+YTF L +C+ E H +K G
Sbjct: 90 IRGYSNSKEPEEALLLYHHMLYHSVPHNAYTFPFLLKACSSMSASEETQQIHAHIIKMGF 149
Query: 119 DFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDI 178
E+ NSL+N+Y G + AR +F Q+ RD +SWNS++ G+ + G++ A+E+F+
Sbjct: 150 GSEIYTTNSLLNVYSKSGDIKSARLLFDQVDQRDTVSWNSMIDGYTKCGEIEMAYEIFNH 209
Query: 179 MPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEG 238
MPERN++SW MISG +G P +L LF M +G + ++ + S L AC ++G
Sbjct: 210 MPERNIISWTSMISGCVGAGKPKEALNLFHRMQTAGIKLDNVALVSTLQACADLGVLDQG 269
Query: 239 RSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIH 298
+ +H Y + ++ + IL LID+Y+KC +E A VF M ++ + W AMI G+ IH
Sbjct: 270 KWIHAYIKKHEIEIDPILGCVLIDMYAKCGDLEEAIEVFRKMEEKGVSVWTAMISGYAIH 329
Query: 299 GKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIK 358
G+ E ++ F + AG + P+++TF G++ AC A L+ E + F M + K
Sbjct: 330 GRGREALEWFMKM---QTAG--VEPNQMTFTGILTACSHAGLVHEAKLLFESMERIHGFK 384
Query: 359 PNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVE 418
P+ HY CM +L A L +EAEE++ MP + + +W +LL+ C G + + +
Sbjct: 385 PSIEHYGCMVDLLGRAGLLKEAEELIENMP-----VKPNAAIWGALLNACHIHGNLELGK 439
Query: 419 RLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLKEVV 478
++ K + +DP RY L +++A AG+W ARVR MK++ + ++PGC ++ +
Sbjct: 440 QIGKILIQVDPGHGGRYIHLASIHAAAGEWNQAARVRRQMKEQGVSKLPGCSVISVNGTA 499
Query: 479 EKLKVGHFWRGGMKEEVNKMME 500
+ G +K E++ M+E
Sbjct: 500 HEFLAGDESHPQIK-EIDHMLE 520
>gi|225430143|ref|XP_002282128.1| PREDICTED: pentatricopeptide repeat-containing protein At2g20540
[Vitis vinifera]
Length = 537
Score = 308 bits (788), Expect = 5e-81, Method: Compositional matrix adjust.
Identities = 161/487 (33%), Positives = 265/487 (54%), Gaps = 16/487 (3%)
Query: 3 QLLQIQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAY 62
+L +I AH++ L +SF ++ +G +Y L+FK + +P F NA+I+AY
Sbjct: 29 ELKKIHAHIVKFSLS-QSSFLVTKMVDVCNHYGETEYANLLFKGVADPNAFLYNAMIRAY 87
Query: 63 SNSCVPDQGVVFYLQMI-----KNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNG 117
++ V + Y QM+ +N P+ +TF + SCA C + G HG K G
Sbjct: 88 KHNKVYVLAITVYKQMLGNPHGENPIFPDKFTFPFVVKSCAGLMCYDLGKQVHGHVFKFG 147
Query: 118 VDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFD 177
V NSL+ MY ++D A +F +M+ RD +SWN+++SGHVR G M A +F+
Sbjct: 148 QKSNTVVENSLVEMYVKCDSLDDAHRVFEEMTERDAVSWNTLISGHVRLGQMRRARAIFE 207
Query: 178 IMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNE 237
M ++ + SW ++SGY++ G +L+ FR M G ++ ++ SVL C +
Sbjct: 208 EMQDKTIFSWTAIVSGYARIGCYADALEFFRRMQMVGIEPDEISLVSVLPDCAQLGALEL 267
Query: 238 GRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCI 297
G+ +H Y + NI + ALI++Y+KC ++ +R+FD M +R+++ W+ MI+G
Sbjct: 268 GKWIHIYADKAGFLRNICVCNALIEMYAKCGSIDQGRRLFDQMKERDVISWSTMIVGLAN 327
Query: 298 HGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKI 357
HG+ E I+LF + I P ITF+G++ AC A LL EG +YF M Y I
Sbjct: 328 HGRAREAIELFQEM-----QKAKIEPSIITFVGLLTACAHAGLLNEGLRYFESMKRDYNI 382
Query: 358 KPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMV 417
+P HY C+ NL + ++A E+++KMP D S +W SLLS CR G + +
Sbjct: 383 EPGVEHYGCLVNLLGLSGRLDQALELVKKMPRKPD-----SPIWGSLLSSCRSHGNLKIA 437
Query: 418 ERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLKEV 477
+ ++++P D Y L N+YA G+W+ V+R+R+LM+ + M + PGC +++ +
Sbjct: 438 VIAMEHLLELEPADTGNYVLLSNLYADLGKWDGVSRMRKLMRSKSMKKTPGCSSIEVDNM 497
Query: 478 VEKLKVG 484
V++ G
Sbjct: 498 VQEFASG 504
>gi|224082560|ref|XP_002306741.1| predicted protein [Populus trichocarpa]
gi|222856190|gb|EEE93737.1| predicted protein [Populus trichocarpa]
Length = 509
Score = 308 bits (788), Expect = 5e-81, Method: Compositional matrix adjust.
Identities = 164/486 (33%), Positives = 268/486 (55%), Gaps = 12/486 (2%)
Query: 1 MKQLLQIQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIK 60
MK L +I A LI +GL + + L ++ G +Y LVF I NP F N +I+
Sbjct: 9 MKDLQKIHAQLIKTGLAKDTIAASRVLAFCTSPAGDINYAYLVFTQIRNPNLFVWNTIIR 68
Query: 61 AYSNSCVPDQGVVFYLQMI--KNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGV 118
+S S P + ++ M+ P T+ S+F + A+ G G HG +K G+
Sbjct: 69 GFSQSSTPHNAISLFIDMMFTSPTTQPQRLTYPSVFKAYAQLGLAHEGAQLHGRVIKLGL 128
Query: 119 DFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDI 178
+ + + N+++NMY G + A+ +F + D+++WN+++ G + G++ + LFD
Sbjct: 129 ENDQFIQNTILNMYVNCGFLGEAQRIFDGATGFDVVTWNTMIIGLAKCGEIDKSRRLFDK 188
Query: 179 MPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEG 238
M RN VSWN MISGY + G +++LF M + G + ++ TM S+L AC +G
Sbjct: 189 MLLRNTVSWNSMISGYVRKGRFFEAMELFSRMQEEGIKPSEFTMVSLLNACACLGALRQG 248
Query: 239 RSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIH 298
+H Y V+ + N I+ TA+ID+YSKC ++ A +VF S + L CWN++ILG +
Sbjct: 249 EWIHDYIVKNNFALNSIVITAIIDMYSKCGSIDKALQVFKSAPKKGLSCWNSLILGLAMS 308
Query: 299 GKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIK 358
G+ E ++LF+ L ++ PD ++FIGV+ AC A ++ + YF M + YKI+
Sbjct: 309 GRGNEAVRLFSKL-----ESSNLKPDHVSFIGVLTACNHAGMVDRAKDYFLLMSETYKIE 363
Query: 359 PNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVE 418
P+ HY CM ++ A L EEAEE+++ MP + D +I+W SLLS CR G + M +
Sbjct: 364 PSIKHYSCMVDVLGRAGLLEEAEELIKSMPVNPD-----AIIWGSLLSSCREYGNIEMAK 418
Query: 419 RLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLKEVV 478
+ AK ++DP + S + L NVYA +E+ R +K+++M + PGC L+++ V
Sbjct: 419 QAAKRVNELDPNESSSFILLSNVYAAHNHFEEAIEQRLSLKEKQMDKEPGCSLIEVNGEV 478
Query: 479 EKLKVG 484
+ G
Sbjct: 479 HEFVAG 484
>gi|357130159|ref|XP_003566719.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g51320-like [Brachypodium distachyon]
Length = 551
Score = 306 bits (785), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 157/386 (40%), Positives = 234/386 (60%), Gaps = 20/386 (5%)
Query: 110 HGLALKNGVDFELP--VMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGH---- 163
H L+ G+ P N+L++ Y G + AR +F +M RD++S N++++ +
Sbjct: 149 HAQLLRRGLLLAPPPHAANALLHFYAGAGRLPSARRLFDEMPSRDIVSHNTMMTAYAAAA 208
Query: 164 VRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMA 223
V SG + AA +LFD M RN VSWN+M++GY ++ P +L++ R M +G RG M
Sbjct: 209 VSSGGIDAARQLFDGMLLRNAVSWNVMVTGYVRAKRPEEALEVVRWMAGAGVRGTAAMMV 268
Query: 224 SVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADR 283
TAC R R GR VH +R + N+++ T+L+D+Y KC+K+E A++VFD + R
Sbjct: 269 GAATACARLGRLRSGREVHCAFMRRFEEDNLLVWTSLVDMYGKCRKLEAARKVFDRLRFR 328
Query: 284 NLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSIS------PDEITFIGVICACVR 337
NLVCWNAMI+GHC++G+P +GI+LF ++ GG I PDE+TF+GV+CAC R
Sbjct: 329 NLVCWNAMIVGHCVYGEPGDGIQLFHEMIG---RGGYIDDKLVLRPDEVTFVGVLCACTR 385
Query: 338 AELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFE 397
L+ G+ YF +M Y ++P FAHYWCMANL EEAE +L+ +P + +
Sbjct: 386 LGLVDAGKVYFAEMSTMYSLRPTFAHYWCMANLLGSVGHLEEAEGLLKSVPGE-----LK 440
Query: 398 SIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVREL 457
+ LL LCRF+G + ER+A ++++P + + Y L VYA AG+WEDV RV+ +
Sbjct: 441 ARALGGLLGLCRFRGEWELGERIALRLIELEPSNCAHYALLCGVYASAGRWEDVHRVKSI 500
Query: 458 MKKRRMGRMPGCRLVDLKEVVEKLKV 483
+K+ PG RLVDL E+V + KV
Sbjct: 501 IKESDERFSPGHRLVDLNEIVHQFKV 526
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 50/234 (21%), Positives = 91/234 (38%), Gaps = 40/234 (17%)
Query: 56 NAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALK 115
N ++ Y + P++ + M G + V +CA+ G + G H ++
Sbjct: 233 NVMVTGYVRAKRPEEALEVVRWMAGAGVRGTAAMMVGAATACARLGRLRSGREVHCAFMR 292
Query: 116 NGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHEL 175
+ L V SL++MYG ++ AR +F ++ R+L+ WN+++ GH G+
Sbjct: 293 RFEEDNLLVWTSLVDMYGKCRKLEAARKVFDRLRFRNLVCWNAMIVGHCVYGE------- 345
Query: 176 FDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSG--------FRGNDKTMASVLT 227
PG ++LF EM+ G R ++ T VL
Sbjct: 346 ------------------------PGDGIQLFHEMIGRGGYIDDKLVLRPDEVTFVGVLC 381
Query: 228 ACGRSARFNEGRSVHG-YTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSM 280
AC R + G+ + SL+P + +L +E A+ + S+
Sbjct: 382 ACTRLGLVDAGKVYFAEMSTMYSLRPTFAHYWCMANLLGSVGHLEEAEGLLKSV 435
>gi|357466605|ref|XP_003603587.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355492635|gb|AES73838.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 568
Score = 306 bits (784), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 166/484 (34%), Positives = 264/484 (54%), Gaps = 14/484 (2%)
Query: 1 MKQLLQIQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIK 60
+ QL +I AH++ L +N F +L + G Y L+FK + +P F NA+I+
Sbjct: 23 ITQLKKIHAHVVKLSLSQSN-FLVTKMLDSCDNLGHVSYATLLFKQLLHPNIFTYNAIIR 81
Query: 61 AYSNSCVPDQGVVFYLQMIK---NGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNG 117
Y+++ + ++QM+ N P+ +TF + SC C G HGL K G
Sbjct: 82 TYAHNRHHSSAISVFVQMLTHSTNSVFPDKFTFPFVIKSCTGILCHRLGMQVHGLVYKFG 141
Query: 118 VDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFD 177
DF N+LI+MY FG + A +F +MS RD+ISWNS++ G+V+ G M++A ELFD
Sbjct: 142 ADFHCITENALIDMYTKFGDLTNACKVFEEMSHRDVISWNSLIFGYVKLGQMNSARELFD 201
Query: 178 IMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNE 237
MP R +VSW MI+GY + G G +L +FREM G ++ ++ +VL AC +
Sbjct: 202 DMPVRTIVSWTTMITGYGRMGCYGDALDVFREMQMVGIEPDEISIIAVLPACAQLGALEV 261
Query: 238 GRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCI 297
G+ +H Y + + ALI++Y+KC ++ A +FD + +++++ W+ MI G
Sbjct: 262 GKWIHMYADKNGFLRKTGICNALIEMYAKCGCIDEAWNLFDQLVEKDVISWSTMIGGLAN 321
Query: 298 HGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKI 357
HGK E I+LF + VA P+EITF+GV+ AC L EG KYF M Y I
Sbjct: 322 HGKGYEAIQLFEEMCKVRVA-----PNEITFLGVLLACSHTGLWDEGLKYFDVMSASYHI 376
Query: 358 KPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMV 417
+P HY C+ +L + +A + + KMP D S +W SLLS CR + +
Sbjct: 377 EPEIEHYGCLIDLLGRSGCLGQALDTISKMPIKPD-----SRIWNSLLSSCRIHRNLQIA 431
Query: 418 ERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLKEV 477
K ++++P++ Y L N+YA G+WEDV+ +R+L++ +R+ + PG +++ V
Sbjct: 432 VIAVKQLMELEPEESGNYVLLANMYAEHGKWEDVSNIRKLIRNKRIKKTPGSSSIEVNNV 491
Query: 478 VEKL 481
V++
Sbjct: 492 VQEF 495
>gi|359476084|ref|XP_002282081.2| PREDICTED: pentatricopeptide repeat-containing protein
At2g20540-like [Vitis vinifera]
Length = 541
Score = 305 bits (781), Expect = 3e-80, Method: Compositional matrix adjust.
Identities = 160/487 (32%), Positives = 265/487 (54%), Gaps = 16/487 (3%)
Query: 3 QLLQIQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAY 62
+L +I AH++ L +SF ++ +Y L+FK + +P F NA+I+AY
Sbjct: 29 ELKKIHAHIVKFSLS-QSSFLVTKMVDVCNHHAETEYANLLFKRVADPNAFLYNAMIRAY 87
Query: 63 SNSCVPDQGVVFYLQMI-----KNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNG 117
++ V + Y QM+ +N P+ +TF + SCA C + G HG K G
Sbjct: 88 KHNKVYVLAITVYKQMLGHSHGENPIFPDKFTFPFVVKSCAGLMCYDLGKQVHGHVFKFG 147
Query: 118 VDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFD 177
V NSL+ MY ++D A +F +M+ RD +SWN+++SGHVR G M A +F+
Sbjct: 148 QKSNTVVENSLVEMYVKCDSLDDAHKVFEEMTERDAVSWNTLISGHVRLGQMRRARAIFE 207
Query: 178 IMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNE 237
M ++ + SW ++SGY++ G +L+ FR M G ++ ++ SVL AC +
Sbjct: 208 EMQDKTIFSWTAIVSGYARIGCYADALEFFRRMQMVGIEPDEISLVSVLPACAQLGALEL 267
Query: 238 GRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCI 297
G+ +H Y + NI + ALI++Y+KC ++ +R+FD M +R+++ W+ MI+G
Sbjct: 268 GKWIHFYADKAGFLRNICVCNALIEMYAKCGSIDEGRRLFDQMNERDVISWSTMIVGLAN 327
Query: 298 HGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKI 357
HG+ E I+LF + I P+ ITF+G++ AC A LL EG +YF M Y I
Sbjct: 328 HGRAHEAIELFQEM-----QKAKIEPNIITFVGLLSACAHAGLLNEGLRYFESMKRDYNI 382
Query: 358 KPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMV 417
+P HY C+ NL + ++A E+++KMP M +S +W SLLS CR + +
Sbjct: 383 EPGVEHYGCLVNLLGLSGRLDQALELIKKMP-----MKPDSAIWGSLLSSCRSHSNLEIA 437
Query: 418 ERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLKEV 477
+ ++++P D Y L N+YA G+W+ V+R+R+LM+ + M + PGC +++ +
Sbjct: 438 VIAMEHLLELEPADTGNYVLLSNLYADLGKWDGVSRMRKLMRSKSMKKTPGCSSIEVDNM 497
Query: 478 VEKLKVG 484
V++ G
Sbjct: 498 VQEFASG 504
>gi|296089800|emb|CBI39619.3| unnamed protein product [Vitis vinifera]
Length = 640
Score = 305 bits (781), Expect = 3e-80, Method: Compositional matrix adjust.
Identities = 179/511 (35%), Positives = 285/511 (55%), Gaps = 25/511 (4%)
Query: 1 MKQLLQIQAHLITSGLFFNNSFWTINLLKHSAD--FGSPDYTVLVFKCINNPGTFCVNAV 58
+KQ +I + +I +G F +++F LLK S D F DY++ +F I N F N +
Sbjct: 42 LKQFNRILSQMILTG-FISDTFAASRLLKFSTDSPFIGLDYSLQIFDRIENSNGFMWNTM 100
Query: 59 IKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGM-CHGLALKNG 117
++AY S ++ ++ Y M+KN P++YT+ + +CA +E GG H LK G
Sbjct: 101 MRAYIQSNSAEKALLLYKLMVKNNVGPDNYTYPLVVQACA-VRLLEFGGKEIHDHVLKVG 159
Query: 118 VDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHE--- 174
D ++ V N+LINMY G M AR +F + D +SWNSI++G+V+ GDM E
Sbjct: 160 FDSDVYVQNTLINMYAVCGNMRDARKLFDESPVLDSVSWNSILAGYVKKGDMGQVMEAWK 219
Query: 175 LFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSAR 234
LF+ M E+++VSW+ +ISGY ++G +L +F EM +G R ++ + SVL+AC +
Sbjct: 220 LFNEMDEKDMVSWSALISGYEQNGMYEEALVMFIEMNANGMRLDEVVVVSVLSACAHLSI 279
Query: 235 FNEGRSVHGYTVRTSLKPNIILDTALI----DLYSKCQKVEVAQRVFDSMADRNLVCWNA 290
G+ +HG +R ++ + L ALI D+Y KC VE A VF+ M ++ + WNA
Sbjct: 280 VKTGKMIHGLVIRMGIESYVNLQNALIHMYSDMYMKCGCVENALEVFNGMEEKGVSSWNA 339
Query: 291 MILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQ 350
+I+G ++G E + +F+ + N V P+EITF+GV+ AC L+ EGR +F
Sbjct: 340 LIIGLAVNGLVERSLDMFSEMKNNGVI-----PNEITFMGVLGACRHMGLVDEGRCHFAS 394
Query: 351 MIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRF 410
MI+ + I+PN HY CM +L A L EAE+++ MP M+ + W +LL C+
Sbjct: 395 MIEKHGIEPNVKHYGCMVDLLGRAGLLNEAEKLIESMP-----MAPDVATWGALLGACKK 449
Query: 411 QGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCR 470
G M ER+ + +++ P + L N++A G WEDV VR +MK++ + + PGC
Sbjct: 450 HGDTEMGERVGRKLIELQPDHDGFHVLLSNIFASKGDWEDVLEVRGMMKQQGVVKTPGCS 509
Query: 471 LVDLKEVVEKLKVG---HFWRGGMKEEVNKM 498
L++ VV + G H W ++ +N+M
Sbjct: 510 LIEANGVVHEFLAGDKTHPWINKVEGMLNEM 540
>gi|296085795|emb|CBI31119.3| unnamed protein product [Vitis vinifera]
Length = 512
Score = 303 bits (777), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 169/497 (34%), Positives = 275/497 (55%), Gaps = 13/497 (2%)
Query: 1 MKQLLQIQAHLITSGLFFN--NSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAV 58
M + QIQ+HL SG F+ + I+ SA G + L+F + +F N +
Sbjct: 1 MAHIKQIQSHLTVSGTLFDPFAAGRIISFCAVSAQ-GDISHAYLLFLSLPRRTSFIWNTM 59
Query: 59 IKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGV 118
++A+++ P + Y M+ GF+PN+YTF L +CA+ + G + H A++ G
Sbjct: 60 LRAFTDKKEPATVLSLYKYMLSTGFLPNNYTFSFLLQACAQLSDLSFGILLHAQAVRLGW 119
Query: 119 DFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDI 178
+ V N L+++Y MD AR +F RD+++W ++++G+ +SG + A +LFD
Sbjct: 120 EAYDFVQNGLLHLYASCNCMDSARRLFDGSVNRDVVTWTAVINGYAKSGQVVVARQLFDE 179
Query: 179 MPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEG 238
MPE+N VSW+ MI+GY++ G +L+LF +M +GFR N + LTAC ++G
Sbjct: 180 MPEKNAVSWSAMITGYAQIGLFREALELFNDMQIAGFRPNHGAIVGALTACAFLGALDQG 239
Query: 239 RSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIH 298
R +H Y R + + IL TALID+Y+KC VE A RVFD M DR++ + ++I G H
Sbjct: 240 RWIHAYVDRNRMVLDRILGTALIDMYAKCGCVETACRVFDEMLDRDVFAFTSLISGLANH 299
Query: 299 GKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIK 358
G I++FT + N V P+E+TFI ++ AC R L+ EG + F+ M + Y I+
Sbjct: 300 GHSATAIEMFTRMQNEGVC-----PNEVTFICLLSACSRVGLVEEGLRIFKSMTNIYGIE 354
Query: 359 PNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVE 418
P HY C+ +L A + E+A+ ++R+MP + D S + +LL+ CR G V + +
Sbjct: 355 PVVQHYGCLVDLLGRAGMLEDAKRVVREMPLEPD-----SYVLGALLNACRVHGDVELGK 409
Query: 419 RLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLKEVV 478
+ + + L N+YA A QWEDVA+VR+ M+++++ ++PGC L+++ V
Sbjct: 410 ETVECLAERSLDHGGVHVLLSNMYASANQWEDVAKVRKGMEEKKVKKVPGCSLIEVDGAV 469
Query: 479 EKLKVGHFWRGGMKEEV 495
+ G M E V
Sbjct: 470 FEFVAGDMSHVFMDEIV 486
>gi|225466196|ref|XP_002265420.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Vitis vinifera]
Length = 537
Score = 303 bits (777), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 169/497 (34%), Positives = 275/497 (55%), Gaps = 13/497 (2%)
Query: 1 MKQLLQIQAHLITSGLFFN--NSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAV 58
M + QIQ+HL SG F+ + I+ SA G + L+F + +F N +
Sbjct: 26 MAHIKQIQSHLTVSGTLFDPFAAGRIISFCAVSAQ-GDISHAYLLFLSLPRRTSFIWNTM 84
Query: 59 IKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGV 118
++A+++ P + Y M+ GF+PN+YTF L +CA+ + G + H A++ G
Sbjct: 85 LRAFTDKKEPATVLSLYKYMLSTGFLPNNYTFSFLLQACAQLSDLSFGILLHAQAVRLGW 144
Query: 119 DFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDI 178
+ V N L+++Y MD AR +F RD+++W ++++G+ +SG + A +LFD
Sbjct: 145 EAYDFVQNGLLHLYASCNCMDSARRLFDGSVNRDVVTWTAVINGYAKSGQVVVARQLFDE 204
Query: 179 MPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEG 238
MPE+N VSW+ MI+GY++ G +L+LF +M +GFR N + LTAC ++G
Sbjct: 205 MPEKNAVSWSAMITGYAQIGLFREALELFNDMQIAGFRPNHGAIVGALTACAFLGALDQG 264
Query: 239 RSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIH 298
R +H Y R + + IL TALID+Y+KC VE A RVFD M DR++ + ++I G H
Sbjct: 265 RWIHAYVDRNRMVLDRILGTALIDMYAKCGCVETACRVFDEMLDRDVFAFTSLISGLANH 324
Query: 299 GKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIK 358
G I++FT + N V P+E+TFI ++ AC R L+ EG + F+ M + Y I+
Sbjct: 325 GHSATAIEMFTRMQNEGVC-----PNEVTFICLLSACSRVGLVEEGLRIFKSMTNIYGIE 379
Query: 359 PNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVE 418
P HY C+ +L A + E+A+ ++R+MP + D S + +LL+ CR G V + +
Sbjct: 380 PVVQHYGCLVDLLGRAGMLEDAKRVVREMPLEPD-----SYVLGALLNACRVHGDVELGK 434
Query: 419 RLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLKEVV 478
+ + + L N+YA A QWEDVA+VR+ M+++++ ++PGC L+++ V
Sbjct: 435 ETVECLAERSLDHGGVHVLLSNMYASANQWEDVAKVRKGMEEKKVKKVPGCSLIEVDGAV 494
Query: 479 EKLKVGHFWRGGMKEEV 495
+ G M E V
Sbjct: 495 FEFVAGDMSHVFMDEIV 511
>gi|356495396|ref|XP_003516564.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Glycine max]
Length = 516
Score = 303 bits (776), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 157/485 (32%), Positives = 255/485 (52%), Gaps = 11/485 (2%)
Query: 1 MKQLLQIQAHLITSGLFFNNSFWTINLLKHS-ADFGSPDYTVLVFKCINNPGTFCVNAVI 59
MK+L+QI L+ G N + L+ ++ + + YT +VF I++P T N ++
Sbjct: 23 MKELMQIHGQLLKKGTIRNQLTVSTLLVSYARIELVNLAYTRVVFDSISSPNTVIWNTML 82
Query: 60 KAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVD 119
+AYSNS P+ ++ Y QM+ N NSYTF L +C+ E H +K G
Sbjct: 83 RAYSNSNDPEAALLLYHQMLHNSVPHNSYTFPFLLKACSALSAFEETQQIHAHIIKRGFG 142
Query: 120 FELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIM 179
E+ NSL+ +Y G + A +F Q+ RD++SWN ++ G+++ G++ A+++F M
Sbjct: 143 LEVYATNSLLRVYAISGNIQSAHVLFNQLPTRDIVSWNIMIDGYIKFGNLDMAYKIFQAM 202
Query: 180 PERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGR 239
PE+NV+SW MI G+ + G +L L ++M+ +G + + T++ L+AC +G+
Sbjct: 203 PEKNVISWTTMIVGFVRIGMHKEALSLLQQMLVAGIKPDSITLSCSLSACAGLGALEQGK 262
Query: 240 SVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHG 299
+H Y + +K + +L L D+Y KC ++E A VF + + + W A+I G IHG
Sbjct: 263 WIHTYIEKNEIKIDPVLGCVLTDMYVKCGEMEKALLVFSKLEKKCVCAWTAIIGGLAIHG 322
Query: 300 KPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKP 359
K E + FT + I+P+ ITF ++ AC A L EG+ F M Y IKP
Sbjct: 323 KGREALDWFTQM-----QKAGINPNSITFTAILTACSHAGLTEEGKSLFESMSSVYNIKP 377
Query: 360 NFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVER 419
+ HY CM +L A L +EA E + MP + + +W +LL+ C+ + +
Sbjct: 378 SMEHYGCMVDLMGRAGLLKEAREFIESMPVKPN-----AAIWGALLNACQLHKHFELGKE 432
Query: 420 LAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLKEVVE 479
+ K +++DP RY L ++YA AG+W V RVR +K R + PGC + L VV
Sbjct: 433 IGKILIELDPDHSGRYIHLASIYAAAGEWNQVVRVRSQIKHRGLLNHPGCSSITLNGVVH 492
Query: 480 KLKVG 484
+ G
Sbjct: 493 EFFAG 497
>gi|225446849|ref|XP_002279693.1| PREDICTED: pentatricopeptide repeat-containing protein At2g42920,
chloroplastic [Vitis vinifera]
gi|302143555|emb|CBI22116.3| unnamed protein product [Vitis vinifera]
Length = 533
Score = 302 bits (773), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 164/486 (33%), Positives = 268/486 (55%), Gaps = 12/486 (2%)
Query: 1 MKQLLQIQAHLITSGLFFNN-SFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVI 59
MK L +I AHL+ +GL + + + ++ G +Y LVF I++P F N +I
Sbjct: 37 MKDLQKIHAHLLKTGLAKHPLAVSPVLAFCATSPGGDINYAYLVFTQIHSPNLFSWNTII 96
Query: 60 KAYSNSCVPDQGVVFYLQM-IKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGV 118
+ +S S P + ++ M I + P+ T+ S+F + A+ G G HG +K G+
Sbjct: 97 RGFSQSSTPHHAISLFIDMLIVSSVQPHRLTYPSVFKAYAQLGLAHYGAQLHGRVIKLGL 156
Query: 119 DFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDI 178
F+ + N++I MY G + F + D+++WNS++ G + G++ + +LFD
Sbjct: 157 QFDPFIRNTIIYMYANCGFLSEMWKAFYERMDFDIVAWNSMIMGLAKCGEVDESRKLFDE 216
Query: 179 MPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEG 238
MP RN VSWN MISGY ++G +L LF +M + + ++ TM S+L A R +G
Sbjct: 217 MPLRNTVSWNSMISGYVRNGRLREALDLFGQMQEERIKPSEFTMVSLLNASARLGALKQG 276
Query: 239 RSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIH 298
+H Y + + + N+I+ ++ID+Y KC + A +VF+ + L WN MILG ++
Sbjct: 277 EWIHDYIRKNNFELNVIVTASIIDMYCKCGSIGEAFQVFEMAPLKGLSSWNTMILGLAMN 336
Query: 299 GKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIK 358
G E I+LF+ L ++ PD++TF+GV+ AC + L+ + ++YF M YKI+
Sbjct: 337 GCENEAIQLFSRL-----ECSNLRPDDVTFVGVLTACNYSGLVDKAKEYFSLMSKTYKIE 391
Query: 359 PNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVE 418
P+ HY CM + A L EEAEE++R MP + D +I+W SLLS CR G V + +
Sbjct: 392 PSIKHYSCMVDTLGRAGLLEEAEELIRNMPVNPD-----AIIWSSLLSACRKHGNVELAK 446
Query: 419 RLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLKEVV 478
R AK VD+D D Y L N+YA + Q+E+ R MK++++ + PGC L+++ +
Sbjct: 447 RAAKHIVDLDGNDSCGYVLLSNIYAASDQFEEAMEQRLSMKEKQIEKEPGCSLIEVNGEI 506
Query: 479 EKLKVG 484
+ G
Sbjct: 507 HEFVAG 512
>gi|359491588|ref|XP_002281032.2| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At5g61800 [Vitis vinifera]
Length = 576
Score = 301 bits (772), Expect = 4e-79, Method: Compositional matrix adjust.
Identities = 162/495 (32%), Positives = 272/495 (54%), Gaps = 28/495 (5%)
Query: 1 MKQLLQIQAHLITSGLFF---NNSFWTINLLKHSADF-----GSPD-------YTVLVFK 45
+KQL Q+ AH IT+GL + ++S N+L SP Y + VF
Sbjct: 28 LKQLHQVHAHTITTGLLWGLHHSSLLLTNILTAFTALLPTTNASPTTPAALTGYALSVFN 87
Query: 46 CINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVER 105
I NP TF N +I+A++ P +V +++M + P+++TF +C+ +
Sbjct: 88 RIPNPSTFGYNTMIRAHTLLSSPLAALVIFVRMRRLSVPPDTHTFPFCLKACSLLPALSL 147
Query: 106 GGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVR 165
H A K G +L V N+LI++Y + A +F + S +D++S+N+++ G ++
Sbjct: 148 AQTLHSQAFKFGFGADLFVCNTLIHVYSVNKHLHHACQVFNETSLKDVVSYNALIGGFIK 207
Query: 166 SGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGC--SLKLFREMMKSGFRGNDKTMA 223
GD A LFD MP R+ VSW +++GY++SG+ C +++LF M+ S R ++ +
Sbjct: 208 VGDTDRARRLFDKMPIRDAVSWGTLLAGYAQSGDL-CMDAIQLFNRMLISTVRPDNIALV 266
Query: 224 SVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADR 283
S L+AC + +G+S+H Y + + N L T L+DLY+KC +E A+ +F+S D+
Sbjct: 267 SALSACAQLGELEQGKSIHVYIKQNRIPINAFLSTGLVDLYAKCGCIETAREIFESSPDK 326
Query: 284 NLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTE 343
NL WNA+++G +HG+ + F+ ++ I PD ++F+G++ C A L+ E
Sbjct: 327 NLFTWNALLVGLGMHGRGHLSLHYFSRMIE-----AGIKPDGVSFLGILVGCGHAGLVCE 381
Query: 344 GRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVS 403
R +F++M Y++ HY CMA+L A L EA E++ +MP M + +W
Sbjct: 382 ARNFFQEMEVVYRVPRELKHYGCMADLLGRAGLIREAMEMIERMP-----MGGDVFVWGG 436
Query: 404 LLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRM 463
+L CR G V + E+ A++ + ++P+D Y + ++YA AG+WEDVAR+R LM R++
Sbjct: 437 VLGGCRIHGNVEIAEKAAENVMALNPEDDGVYSIMADIYANAGRWEDVARIRRLMHSRQV 496
Query: 464 GRMPGCRLVDLKEVV 478
+ PGC LV L V
Sbjct: 497 KKNPGCSLVQLNNGV 511
>gi|308081474|ref|NP_001183023.1| uncharacterized protein LOC100501345 [Zea mays]
gi|238008826|gb|ACR35448.1| unknown [Zea mays]
Length = 361
Score = 301 bits (772), Expect = 5e-79, Method: Compositional matrix adjust.
Identities = 150/337 (44%), Positives = 217/337 (64%), Gaps = 10/337 (2%)
Query: 148 MSPRDLISWNSIVSGHVRS-GDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKL 206
M RD+ S N++++ R+ + AA ++F+ M RNVVSWN+MI+GY K+ P +L++
Sbjct: 1 MPFRDIASCNTLMTALARTPSGLDAARQVFEGMHLRNVVSWNVMINGYVKAKQPEQALEV 60
Query: 207 FREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSK 266
R M + G RG TM T+C R R GR VH +R N+++ TALID+Y K
Sbjct: 61 VRWMAEVGVRGTAITMVGAATSCARLGRLGAGREVHCAFLRRFEDDNLLVWTALIDMYGK 120
Query: 267 CQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEI 326
C++ +A++VFD + RNLVCWNAMI+GHC++G+P +GIKLF + +A G++ PD +
Sbjct: 121 CRRAGIARKVFDQLRMRNLVCWNAMIIGHCVYGEPVDGIKLFQHM----IALGNVQPDGV 176
Query: 327 TFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRK 386
TFIGV+CAC R LL +G+ YF QM Y KP F+HYWCMANLY L EEAE +L+
Sbjct: 177 TFIGVLCACARLGLLEDGKAYFEQMNTTYNFKPTFSHYWCMANLYGSVGLLEEAEGLLQN 236
Query: 387 MPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAG 446
+PED ++ LL LCRF+ + ER+A ++++P + + Y L NVYA AG
Sbjct: 237 IPED-----LKARALGGLLGLCRFRRDWRLGERIALRLIELEPSNNAHYALLCNVYAAAG 291
Query: 447 QWEDVARVRELMKKRRMGRMPGCRLVDLKEVVEKLKV 483
+WE+V RV+ +MK+R PG RLV+L E+V++ K+
Sbjct: 292 RWEEVHRVKAIMKERDERFSPGHRLVNLNEIVDEFKI 328
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 81/361 (22%), Positives = 132/361 (36%), Gaps = 76/361 (21%)
Query: 38 DYTVLVFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSC 97
D VF+ ++ N +I Y + P+Q + M + G + T V SC
Sbjct: 24 DAARQVFEGMHLRNVVSWNVMINGYVKAKQPEQALEVVRWMAEVGVRGTAITMVGAATSC 83
Query: 98 AKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWN 157
A+ G + G H L+ D L V +LI+MYG AR +F Q+ R+L+ WN
Sbjct: 84 ARLGRLGAGREVHCAFLRRFEDDNLLVWTALIDMYGKCRRAGIARKVFDQLRMRNLVCWN 143
Query: 158 SIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSG-FR 216
+++ GH G+ P +KLF+ M+ G +
Sbjct: 144 AMIIGHCVYGE-------------------------------PVDGIKLFQHMIALGNVQ 172
Query: 217 GNDKTMASVLTACGRSARFNEGRSVHGYTVRT-SLKPNIILDTALIDLYSKCQKVEVAQR 275
+ T VL AC R +G++ T + KP + +LY +E A+
Sbjct: 173 PDGVTFIGVLCACARLGLLEDGKAYFEQMNTTYNFKPTFSHYWCMANLYGSVGLLEEAEG 232
Query: 276 VFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICAC 335
+ ++ PE+ + GG + +C
Sbjct: 233 LLQNI--------------------PED--------LKARALGGLLG---------LCRF 255
Query: 336 VRAELLTEGRKYFRQMIDFYKIKP-NFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNM 394
R L E R + +++P N AHY + N+YA A EE + M E ++
Sbjct: 256 RRDWRLGE-----RIALRLIELEPSNNAHYALLCNVYAAAGRWEEVHRVKAIMKERDERF 310
Query: 395 S 395
S
Sbjct: 311 S 311
>gi|359489593|ref|XP_003633947.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g08510-like [Vitis vinifera]
Length = 512
Score = 301 bits (770), Expect = 7e-79, Method: Compositional matrix adjust.
Identities = 162/485 (33%), Positives = 264/485 (54%), Gaps = 17/485 (3%)
Query: 1 MKQLLQIQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIK 60
M +L QIQA+ + +G+ ++LL+ S Y +F I P F N +I+
Sbjct: 1 MNRLKQIQAYTLRNGIEHTKQL-IVSLLQ----IPSIPYAHKLFDFIPKPTVFLYNKLIQ 55
Query: 61 AYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDF 120
AYS+ Q Y QM G PN ++F LF +CA ++G M H +K+G
Sbjct: 56 AYSSHGPHHQCFSLYTQMCLQGCSPNEHSFTFLFSACASLSSHQQGRMLHTHFVKSGFGC 115
Query: 121 ELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMP 180
++ + +L++MY G + AR F +M+ RD+ +WNS+++G+ R GD+ A ELF +MP
Sbjct: 116 DVFALTALVDMYAKLGLLSLARKQFDEMTVRDVPTWNSMIAGYARCGDLEGALELFRLMP 175
Query: 181 ERNVVSWNIMISGYSKSGNPGCSLKLFREM-MKSGFRGNDKTMASVLTACGRSARFNEGR 239
RNV SW MISGY+++G +L +F M ++ R N+ T+ASVL AC G
Sbjct: 176 ARNVTSWTAMISGYAQNGQYAKALSMFLMMEEETEMRPNEVTLASVLPACANLGALEVGE 235
Query: 240 SVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSM-ADRNLVCWNAMILGHCIH 298
+ Y N+ + AL+++Y++C +++ A VF+ + RNL WN+MI+G +H
Sbjct: 236 RIEVYARGNGYFKNLYVSNALLEMYARCGRIDKAWGVFEEIDGRRNLCSWNSMIMGLAVH 295
Query: 299 GKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIK 358
G+ +E I+LF ++ A PD++TF+GV+ AC ++ EG+ +F M + I
Sbjct: 296 GRCDEAIELFYKMLREGAA-----PDDVTFVGVLLACTHGGMVVEGQHFFESMERDFSIA 350
Query: 359 PNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVE 418
P HY CM +L A EA +++ +MP + D S++W +LL C F G V + E
Sbjct: 351 PKLEHYGCMVDLLGRAGELREAHDLILRMPMEPD-----SVVWGTLLGACSFHGHVELAE 405
Query: 419 RLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLKEVV 478
+ A + +++P + Y L N+YA AG+W+ VAR+R+LMK ++ + G ++ +
Sbjct: 406 KAAGALFELEPSNPGNYVILSNIYATAGRWDGVARLRKLMKGGKITKAAGYSFIEEGGHI 465
Query: 479 EKLKV 483
K V
Sbjct: 466 HKFIV 470
>gi|297824259|ref|XP_002880012.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297325851|gb|EFH56271.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 542
Score = 299 bits (765), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 171/487 (35%), Positives = 265/487 (54%), Gaps = 13/487 (2%)
Query: 1 MKQLLQIQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIK 60
M++L QI A+LI +GL + + L A +Y LVF IN+ F N +I+
Sbjct: 38 MRELKQIHANLIKTGLISDTVAASRVLAFCCASPSDRNYAYLVFTRINHKNPFVWNTIIR 97
Query: 61 AYSNSCVPDQGVVFYLQMI--KNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGV 118
+S S P+ + ++ M+ P T+ S+F + A G G HG +K G+
Sbjct: 98 GFSRSSFPEMAISIFIDMLCSSPSVKPQRLTYPSVFKAYASLGLARDGRQLHGRVIKEGL 157
Query: 119 DFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDI 178
+ + + N++++MY G + A +FV M D+++WNSI+ G + G + A +LFD
Sbjct: 158 EDDSFIRNTMLHMYVTCGCLVEAWRLFVGMMGFDVVAWNSIIMGLAKCGLIDQAQKLFDE 217
Query: 179 MPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEG 238
MP+RN VSWN MISG+ ++G +L++FREM + + + TM S+L AC +G
Sbjct: 218 MPQRNGVSWNSMISGFVRNGRFKDALEMFREMQERDVKPDGFTMVSLLNACAYLGASEQG 277
Query: 239 RSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIH 298
R +H Y VR + N I+ TALID+Y KC E +VF+ + L CWN+MILG +
Sbjct: 278 RWIHKYIVRNRFELNSIVITALIDMYCKCGCFEEGLKVFECAPTKQLSCWNSMILGLANN 337
Query: 299 GKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIK 358
G E + LF L + PD ++FIGV+ AC + + + ++FR M + Y I+
Sbjct: 338 GCEERAMDLFLELER-----TGLEPDSVSFIGVLTACAHSGEVHKAGEFFRLMREKYMIE 392
Query: 359 PNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVE 418
P+ HY CM N+ GA L +EAE +++KMP + D +I+W SLL+ CR G V M +
Sbjct: 393 PSIKHYTCMVNVLGGAGLLDEAEALIKKMPVEGD-----TIIWSSLLAACRKNGNVEMAK 447
Query: 419 RLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLK-EV 477
R A ++DP + Y + N YA G +E+ R LMK+R+M + GC +++ EV
Sbjct: 448 RAANCLKNLDPDETCGYVLMSNAYASYGLFEEAVEQRLLMKERQMEKEVGCSSIEVDFEV 507
Query: 478 VEKLKVG 484
E + G
Sbjct: 508 HEFVSCG 514
>gi|125550529|gb|EAY96238.1| hypothetical protein OsI_18133 [Oryza sativa Indica Group]
Length = 357
Score = 298 bits (764), Expect = 4e-78, Method: Compositional matrix adjust.
Identities = 149/336 (44%), Positives = 210/336 (62%), Gaps = 15/336 (4%)
Query: 148 MSPRDLISWNSIVSGHVRSGD-MSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKL 206
M RD+ S+N++++ + + D + AA LFD M RNVVSWNIMI+GY K P +L++
Sbjct: 1 MPFRDVASYNTMMTAYAGAVDGIDAARHLFDGMLLRNVVSWNIMINGYVKVKRPEQALEV 60
Query: 207 FREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSK 266
R M + G RG M TAC R R G+ VH +R + N++ TAL+D+Y K
Sbjct: 61 VRWMAEIGVRGTAVAMVGAATACARLGRLGAGKEVHCAFLRRFEERNLLFSTALVDMYGK 120
Query: 267 CQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEI 326
C+ + A++VFD ++ RN+VCWNAMI+GHC++G+P +GI+LF + I DE+
Sbjct: 121 CRNADAARKVFDRLSFRNVVCWNAMIIGHCVYGEPGDGIRLFHDM---------IGQDEV 171
Query: 327 TFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRK 386
TFIGV+CAC R LL +G+ YF QM Y IKP FAHYWCMANLYA L EEAE +L
Sbjct: 172 TFIGVLCACTRLALLDDGKAYFEQMSTMYNIKPTFAHYWCMANLYASVGLLEEAEGLLTS 231
Query: 387 MPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAG 446
MPE+ ++ LL LCRF+G + ER+ ++++P + Y L NVYA AG
Sbjct: 232 MPEE-----LKAHALGGLLGLCRFRGEWELGERIVLRLIELEPSNSVHYALLCNVYASAG 286
Query: 447 QWEDVARVRELMKKRRMGRMPGCRLVDLKEVVEKLK 482
+WEDV RV+ ++K+R PG RLV+L E++ + +
Sbjct: 287 RWEDVHRVKAIIKERDEKLSPGHRLVNLNEILHQFR 322
Score = 63.2 bits (152), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 60/260 (23%), Positives = 107/260 (41%), Gaps = 39/260 (15%)
Query: 56 NAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALK 115
N +I Y P+Q + M + G + V +CA+ G + G H L+
Sbjct: 42 NIMINGYVKVKRPEQALEVVRWMAEIGVRGTAVAMVGAATACARLGRLGAGKEVHCAFLR 101
Query: 116 NGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHEL 175
+ L +L++MYG D AR +F ++S R+++ WN+++ GH G+
Sbjct: 102 RFEERNLLFSTALVDMYGKCRNADAARKVFDRLSFRNVVCWNAMIIGHCVYGE------- 154
Query: 176 FDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDK-TMASVLTACGRSAR 234
PG ++LF +M+ G D+ T VL AC R A
Sbjct: 155 ------------------------PGDGIRLFHDMI-----GQDEVTFIGVLCACTRLAL 185
Query: 235 FNEGRS-VHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMIL 293
++G++ + ++KP + +LY+ +E A+ + SM + +L
Sbjct: 186 LDDGKAYFEQMSTMYNIKPTFAHYWCMANLYASVGLLEEAEGLLTSMPEELKAHALGGLL 245
Query: 294 GHC-IHGKPEEGIKLFTALV 312
G C G+ E G ++ L+
Sbjct: 246 GLCRFRGEWELGERIVLRLI 265
>gi|224134923|ref|XP_002327523.1| predicted protein [Populus trichocarpa]
gi|222836077|gb|EEE74498.1| predicted protein [Populus trichocarpa]
Length = 635
Score = 298 bits (764), Expect = 4e-78, Method: Compositional matrix adjust.
Identities = 172/520 (33%), Positives = 268/520 (51%), Gaps = 33/520 (6%)
Query: 1 MKQLLQIQAHLITSGLFFNNSFWT-INLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVI 59
M L QI + I +G+ N I S +FG Y +F I P F N +
Sbjct: 27 MYHLKQIHSRTIKTGIICNPIIQNKILSFCCSREFGDMCYARQLFDTIPEPSVFSWNIMF 86
Query: 60 KAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVD 119
K YS P GV YL+M++ P+ YT+ LF ++ ++ G H +K G+D
Sbjct: 87 KGYSRIACPKLGVSLYLEMLERNVKPDCYTYPFLFKGFTRSVALQLGRELHCHVVKYGLD 146
Query: 120 FELPVMNSLINMYGCFGAMDCARNMFVQMS------------------PRDLISWNSIVS 161
+ N+LINMY G +D AR +F MS +D+ISW +IV+
Sbjct: 147 SNVFAHNALINMYSLCGLIDMARGIF-DMSCKSDVVTWNAMISGYNRIKKDVISWTAIVT 205
Query: 162 GHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKT 221
G V +G + AA + F MPER+ VSW MI GY + +L LFREM S + ++ T
Sbjct: 206 GFVNTGQVDAARKYFHKMPERDHVSWTAMIDGYLRLNCYKEALMLFREMQTSKIKPDEFT 265
Query: 222 MASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMA 281
M SVLTAC + G + Y + +K + + ALID+Y KC VE+A +F+++
Sbjct: 266 MVSVLTACAQLGALELGEWIRTYIDKNKVKNDTFVGNALIDMYFKCGNVEMALSIFNTLP 325
Query: 282 DRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELL 341
R+ W AM++G I+G EE + +F+ ++ S++PDE+T++GV+ AC ++
Sbjct: 326 QRDKFTWTAMVVGLAINGCGEEALNMFSQMLK-----ASVTPDEVTYVGVLSACTHTGMV 380
Query: 342 TEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMW 401
EG+K+F M + I+PN AHY CM +L A +EA EI++ MP M SI+W
Sbjct: 381 DEGKKFFASMTARHGIEPNIAHYGCMVDLLGKAGHLKEAHEIIKNMP-----MKPNSIVW 435
Query: 402 VSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKR 461
+LL CR M ER + ++++P + + Y N+YA +W+ + +R++M R
Sbjct: 436 GALLGACRIHKDAEMAERAIEQILELEPNNGAVYVLQCNIYAACNKWDKLRELRQVMMDR 495
Query: 462 RMGRMPGCRLVDLKEVVEKLKVGHFWRGGMKE---EVNKM 498
+ + PGC L+++ +V + G KE ++NKM
Sbjct: 496 GIKKTPGCSLIEMNGIVHEFVAGDQSHPQTKEIYGKLNKM 535
>gi|225435554|ref|XP_002283117.1| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
[Vitis vinifera]
Length = 624
Score = 298 bits (763), Expect = 5e-78, Method: Compositional matrix adjust.
Identities = 172/492 (34%), Positives = 271/492 (55%), Gaps = 21/492 (4%)
Query: 1 MKQLLQIQAHLITSGLFFNNSFWTINLLKH--SADFGSPDYTVLVFKCINNPGTFCVNAV 58
M Q+ Q AHLIT+GL + LLK ++ FGS Y +F I P F N +
Sbjct: 28 MNQIKQTHAHLITTGLILH-PITANKLLKVLIASSFGSLSYAHQLFDQIPKPDVFIYNTM 86
Query: 59 IKAYSNSCVP---DQGVVFYLQMIK-NGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLAL 114
IKA++ +P + +L M++ +GF+PN YTFV +F +C V G A+
Sbjct: 87 IKAHA--VIPTSSHNSMRIFLSMVRVSGFLPNRYTFVFVFKACGNGLGVLEGEQIRVHAI 144
Query: 115 KNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHE 174
K G++ L V N++I MY +G +D AR +F +DL SWN ++ G+V SG++ A E
Sbjct: 145 KIGLESNLFVTNAMIRMYANWGLVDEARRVFDWSLDQDLYSWNIMIGGYVGSGEIGRAKE 204
Query: 175 LFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSAR 234
+FD M ER+VVSW +I+GY + G +L LF EM+++G N+ T+AS L AC
Sbjct: 205 MFDEMSERDVVSWTTIIAGYVQVGCFKEALDLFHEMLQTGPPPNEFTLASALAACANLVA 264
Query: 235 FNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVC--WNAMI 292
++GR +H Y ++ +K N L +L+D+Y+KC +++ A +VF L WNAMI
Sbjct: 265 LDQGRWIHVYIDKSEIKMNERLLASLLDMYAKCGEIDFAAKVFHDEYGLKLKVWPWNAMI 324
Query: 293 LGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMI 352
G+ +HGK +E I LF + +SP+++TF+ ++ AC +L+ EGR YF+ M
Sbjct: 325 GGYAMHGKSKEAIDLFEQM-----KVEKVSPNKVTFVALLNACSHGKLVEEGRGYFKSMA 379
Query: 353 DFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQG 412
Y I+P HY CM +L + L +EAEE + MP M+ ++ +W +LL CR
Sbjct: 380 SSYGIEPEIEHYGCMVDLLGRSGLLKEAEETVFNMP-----MAPDATIWGALLGACRIHK 434
Query: 413 AVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLV 472
+ +R+ K ++D + L N+Y+ +GQW++ VR+ ++ + PGC +
Sbjct: 435 DIERGQRIGKIIKELDSDHIGCHVLLANLYSASGQWDEAKAVRQKIEVSGRKKTPGCSSI 494
Query: 473 DLKEVVEKLKVG 484
+L V + VG
Sbjct: 495 ELNGVFHQFLVG 506
>gi|225450539|ref|XP_002277347.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Vitis vinifera]
Length = 808
Score = 297 bits (760), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 155/446 (34%), Positives = 254/446 (56%), Gaps = 13/446 (2%)
Query: 56 NAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALK 115
+A+I Y + + ++ +V +++M NG + VS+ +CA V+ G M HGL ++
Sbjct: 273 SALISGYEQNGMYEEALVMFIEMNANGMRLDEVVVVSVLSACAHLSIVKTGKMIHGLVIR 332
Query: 116 NGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHEL 175
G++ + + N+LI+MY G + A+ +F D ISWNS++SG ++ G + A L
Sbjct: 333 MGIESYVNLQNALIHMYSGSGEIMDAQKLFNGSHNLDQISWNSMISGCMKCGSVEKARAL 392
Query: 176 FDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARF 235
FD+MPE+++VSW+ +ISGY++ +L LF EM R ++ + SV++AC A
Sbjct: 393 FDVMPEKDIVSWSAVISGYAQHDCFSETLALFHEMQLGQIRPDETILVSVISACTHLAAL 452
Query: 236 NEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGH 295
++G+ VH Y + LK N+IL T L+D+Y KC VE A VF+ M ++ + WNA+I+G
Sbjct: 453 DQGKWVHAYIRKNGLKVNVILGTTLLDMYMKCGCVENALEVFNGMEEKGVSSWNALIIGL 512
Query: 296 CIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFY 355
++G E + +F+ + N V P+EITF+GV+ AC L+ EGR +F MI+ +
Sbjct: 513 AVNGLVERSLDMFSEMKNNGVI-----PNEITFMGVLGACRHMGLVDEGRCHFASMIEKH 567
Query: 356 KIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVA 415
I+PN HY CM +L A L EAE+++ MP M+ + W +LL C+ G
Sbjct: 568 GIEPNVKHYGCMVDLLGRAGLLNEAEKLIESMP-----MAPDVATWGALLGACKKHGDTE 622
Query: 416 MVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLK 475
M ER+ + +++ P + L N++A G WEDV VR +MK++ + + PGC L++
Sbjct: 623 MGERVGRKLIELQPDHDGFHVLLSNIFASKGDWEDVLEVRGMMKQQGVVKTPGCSLIEAN 682
Query: 476 EVVEKLKVG---HFWRGGMKEEVNKM 498
VV + G H W ++ +N+M
Sbjct: 683 GVVHEFLAGDKTHPWINKVEGMLNEM 708
Score = 193 bits (490), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 136/454 (29%), Positives = 213/454 (46%), Gaps = 73/454 (16%)
Query: 1 MKQLLQIQAHLITSGLFFNNSFWTINLLKHSAD--FGSPDYTVLVFKCINNPGTFCVNAV 58
+KQ +I + +I +G F +++F LLK S D F DY++ +F I N F N +
Sbjct: 54 LKQFNRILSQMILTG-FISDTFAASRLLKFSTDSPFIGLDYSLQIFDRIENSNGFMWNTM 112
Query: 59 IKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGM-CHGLALKNG 117
++AY S ++ ++ Y M+KN P++YT+ + +CA +E GG H LK G
Sbjct: 113 MRAYIQSNSAEKALLLYKLMVKNNVGPDNYTYPLVVQACA-VRLLEFGGKEIHDHVLKVG 171
Query: 118 VDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFD 177
D ++ V N+LINMY G M AR +F + D +SWNSI++G+V+ GD+ A +FD
Sbjct: 172 FDSDVYVQNTLINMYAVCGNMRDARKLFDESPVLDSVSWNSILAGYVKKGDVEEAKLIFD 231
Query: 178 IMPERNV-------------------------------VSWNIMISGYSKSGNPGCSLKL 206
MP+RN+ VSW+ +ISGY ++G +L +
Sbjct: 232 QMPQRNIVASNSMIVLLGKMGQVMEAWKLFNEMDEKDMVSWSALISGYEQNGMYEEALVM 291
Query: 207 FREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYS- 265
F EM +G R ++ + SVL+AC + G+ +HG +R ++ + L ALI +YS
Sbjct: 292 FIEMNANGMRLDEVVVVSVLSACAHLSIVKTGKMIHGLVIRMGIESYVNLQNALIHMYSG 351
Query: 266 ------------------------------KCQKVEVAQRVFDSMADRNLVCWNAMILGH 295
KC VE A+ +FD M ++++V W+A+I G+
Sbjct: 352 SGEIMDAQKLFNGSHNLDQISWNSMISGCMKCGSVEKARALFDVMPEKDIVSWSAVISGY 411
Query: 296 CIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFY 355
H E + LF + G I PDE + VI AC L +G K+ I
Sbjct: 412 AQHDCFSETLALFHEM-----QLGQIRPDETILVSVISACTHLAALDQG-KWVHAYIRKN 465
Query: 356 KIKPNFAHYWCMANLYAGAELTEEAEEILRKMPE 389
+K N + ++Y E A E+ M E
Sbjct: 466 GLKVNVILGTTLLDMYMKCGCVENALEVFNGMEE 499
Score = 55.8 bits (133), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 56/247 (22%), Positives = 113/247 (45%), Gaps = 16/247 (6%)
Query: 7 IQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSNSC 66
+ A++ +GL N T LL G + + VF + G NA+I + +
Sbjct: 458 VHAYIRKNGLKVNVILGT-TLLDMYMKCGCVENALEVFNGMEEKGVSSWNALIIGLAVNG 516
Query: 67 VPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLAL--KNGVDFELPV 124
+ ++ + + +M NG +PN TF+ + G+C G V+ G CH ++ K+G++ +
Sbjct: 517 LVERSLDMFSEMKNNGVIPNEITFMGVLGACRHMGLVDE-GRCHFASMIEKHGIEPNVKH 575
Query: 125 MNSLINMYGCFGAMDCARNMF--VQMSPRDLISWNSIVSGHVRSGDMS----AAHELFDI 178
++++ G G ++ A + + M+P D+ +W +++ + GD +L ++
Sbjct: 576 YGCMVDLLGRAGLLNEAEKLIESMPMAP-DVATWGALLGACKKHGDTEMGERVGRKLIEL 634
Query: 179 MPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMA-SVLTACGRSARFNE 237
P+ + +++++S S + R MMK +G KT S++ A G F
Sbjct: 635 QPDHD--GFHVLLSNIFASKGDWEDVLEVRGMMKQ--QGVVKTPGCSLIEANGVVHEFLA 690
Query: 238 GRSVHGY 244
G H +
Sbjct: 691 GDKTHPW 697
>gi|225450565|ref|XP_002281942.1| PREDICTED: pentatricopeptide repeat-containing protein At5g48910
isoform 1 [Vitis vinifera]
Length = 672
Score = 296 bits (758), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 165/523 (31%), Positives = 279/523 (53%), Gaps = 53/523 (10%)
Query: 1 MKQLLQIQAHLITSGLFFNNSFWTINLLKHSADFGSPDY-----TVLVFKCINNPGTFCV 55
+ L Q A ++ +G +S+ +L+K A+ + Y ++ VF + P F
Sbjct: 47 LHHLKQAHALILRTG-HLQDSYIAGSLVKSYANVSTNRYLSFESSLRVFDFVRKPNVFLW 105
Query: 56 NAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALK 115
N +IK + P + ++ Y +M+ F PN YT+ ++ +C+ G V G H +K
Sbjct: 106 NCMIKVCIENNEPFKAILLYYEMMVAHFRPNKYTYPAVLKACSDAGVVAEGVQVHAHLVK 165
Query: 116 NGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPR-DLISWNSIVSGHVRSGDMSAAHE 174
+G+ + +++S I MY FG + AR + D + WN+++ G++R G++ AA E
Sbjct: 166 HGLGGDGHILSSAIRMYASFGRLVEARRILDDKGGEVDAVCWNAMIDGYLRFGEVEAARE 225
Query: 175 LFDIMPERNVVS-WNIMISGYSKSG----------------------------NPGC--- 202
LF+ MP+R+++S WN MISG+S+ G GC
Sbjct: 226 LFEGMPDRSMISTWNAMISGFSRCGMVEVAREFFDEMKERDEISWSAMIDGYIQEGCFME 285
Query: 203 SLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALID 262
+L++F +M K R + SVL+AC ++GR +H Y R S++ + +L T+L+D
Sbjct: 286 ALEIFHQMQKEKIRPRKFVLPSVLSACANLGALDQGRWIHTYAKRNSIQLDGVLGTSLVD 345
Query: 263 LYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSIS 322
+Y+KC ++++A VF+ M+++ + WNAMI G +HG+ E+ I LF+ + I+
Sbjct: 346 MYAKCGRIDLAWEVFEKMSNKEVSSWNAMIGGLAMHGRAEDAIDLFSKM--------DIN 397
Query: 323 PDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEE 382
P+EITF+GV+ AC L+ +G F M Y ++P HY C+ +L A L EAE+
Sbjct: 398 PNEITFVGVLNACAHGGLVQKGLTIFNSMRKEYGVEPQIEHYGCIVDLLGRAGLLTEAEK 457
Query: 383 ILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVY 442
++ +P + +W +LL CR G V + ER+ K ++++PQ+ RY L N+Y
Sbjct: 458 VVSSIPTEPT-----PAVWGALLGACRKHGNVELGERVGKILLELEPQNSGRYTLLSNIY 512
Query: 443 AVAGQWEDVARVRELMKKRRMGRMPGCRLVDL-KEVVEKLKVG 484
A AG+WE+V VR+LMK+R + PG ++DL + V K +G
Sbjct: 513 AKAGRWEEVGEVRKLMKERGIKTTPGTSIIDLGRGEVHKFIIG 555
>gi|297746342|emb|CBI16398.3| unnamed protein product [Vitis vinifera]
Length = 608
Score = 296 bits (758), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 167/499 (33%), Positives = 261/499 (52%), Gaps = 43/499 (8%)
Query: 1 MKQLLQIQAHLITSGLFFNNSFWTINLLKHSA--DFGSPDYTVLVFKCINNPGTFCVNAV 58
+ QL QIQ+ ++ +GL + F + L+ A ++ DY + NP TF N
Sbjct: 63 ISQLKQIQSQMVLTGLI-EDGFASSRLIAFCAISEWRDLDYCTNILFNTRNPNTFSWNVA 121
Query: 59 IKAYSNSCVPDQGVVFYLQMIK-NGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNG 117
I+ + +S P + VV Y ++++ +G P++YT+ LF +CA+ + G G L G
Sbjct: 122 IRGFLDSENPREAVVLYKRVLQCDGTKPDNYTYPLLFKACARLSLIRMGSEILGHVLHLG 181
Query: 118 VDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGH-------------- 163
D ++ V N++I++ G +D AR MF + RDL+SWNS+++G+
Sbjct: 182 FDSDIFVSNAVIHLLVSCGDLDGARKMFDKSCVRDLVSWNSMINGYCGNLESARKLFDSM 241
Query: 164 ---------------VRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFR 208
+SG + A +LFD MP+++VV WN MI GY + +L LF
Sbjct: 242 TNKTMVSWTTMVVGYAQSGLLDMAWKLFDEMPDKDVVPWNAMIGGYVHANRGKEALALFN 301
Query: 209 EMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQ 268
EM ++ TM S L+AC + + G +H Y + L N+ L TALID+Y+KC
Sbjct: 302 EMQAMNINPDEVTMVSCLSACSQLGALDVGIWIHHYIEKHELSLNVALGTALIDMYAKCG 361
Query: 269 KVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITF 328
K+ A +VF + RN + W A+I G +HG I F+ +++ S+ PDE+TF
Sbjct: 362 KITKAIQVFQELPGRNSLTWTAIISGLALHGNAHGAIAYFSEMID-----NSVMPDEVTF 416
Query: 329 IGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMP 388
+G++ AC L+ EGRKYF QM + + P HY CM +L A L EEAEE+++ MP
Sbjct: 417 LGLLSACCHGGLVEEGRKYFSQMSSKFNLSPKLKHYSCMVDLLGRAGLLEEAEELIKSMP 476
Query: 389 EDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQW 448
+ D +++W +L CR G V M ER A + MDP D Y L N+Y A W
Sbjct: 477 IEAD-----AVVWGALFFACRIHGNVLMGERAASKLLQMDPHDSGIYVLLANMYGEAEMW 531
Query: 449 EDVARVRELMKKRRMGRMP 467
++ + R+LM++R + + P
Sbjct: 532 KEAGKARKLMRQRGVEKTP 550
>gi|356553601|ref|XP_003545143.1| PREDICTED: pentatricopeptide repeat-containing protein At2g42920,
chloroplastic-like [Glycine max]
Length = 534
Score = 296 bits (757), Expect = 3e-77, Method: Compositional matrix adjust.
Identities = 159/484 (32%), Positives = 262/484 (54%), Gaps = 10/484 (2%)
Query: 1 MKQLLQIQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIK 60
MK L +I AH+I +GL + + L ++ G +Y L+F I +P +C N +I+
Sbjct: 38 MKDLQKIHAHIIKTGLAHHTVAASRVLTFCASSSGDINYAYLLFTTIPSPNLYCWNTIIR 97
Query: 61 AYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDF 120
+S S P + ++ M+ + +P T+ S+F + A+ G G HG +K G++
Sbjct: 98 GFSRSSTPHLAISLFVDMLCSSVLPQRLTYPSVFKAYAQLGAGYDGAQLHGRVVKLGLEK 157
Query: 121 ELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMP 180
+ + N++I MY G + AR +F ++ D+++ NS++ G + G++ + LFD MP
Sbjct: 158 DQFIQNTIIYMYANSGLLSEARRVFDELVDLDVVACNSMIMGLAKCGEVDKSRRLFDNMP 217
Query: 181 ERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRS 240
R V+WN MISGY ++ +L+LFR+M ++ TM S+L+AC G
Sbjct: 218 TRTRVTWNSMISGYVRNKRLMEALELFRKMQGERVEPSEFTMVSLLSACAHLGALKHGEW 277
Query: 241 VHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGK 300
VH Y R + N+I+ TA+ID+Y KC + A VF++ R L CWN++I+G ++G
Sbjct: 278 VHDYVKRGHFELNVIVLTAIIDMYCKCGVIVKAIEVFEASPTRGLSCWNSIIIGLALNGY 337
Query: 301 PEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPN 360
+ I+ F+ L + PD ++FIGV+ AC + + R YF M++ Y+I+P+
Sbjct: 338 ERKAIEYFSKL-----EASDLKPDHVSFIGVLTACKYIGAVGKARDYFSLMMNKYEIEPS 392
Query: 361 FAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERL 420
HY CM + A L EEAE++++ MP D I+W SLLS CR G V + +R
Sbjct: 393 IKHYTCMVEVLGQAALLEEAEQLIKGMPLKAD-----FIIWGSLLSSCRKHGNVEIAKRA 447
Query: 421 AKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLKEVVEK 480
A+ +++P D S Y + NV A + Q+E+ R LM++R + PGC ++L V +
Sbjct: 448 AQRVCELNPSDASGYLLMSNVQAASNQFEEAMEQRILMRERLAEKEPGCSSIELYGEVHE 507
Query: 481 LKVG 484
G
Sbjct: 508 FLAG 511
>gi|15228028|ref|NP_181820.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75206274|sp|Q9SJG6.1|PP200_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At2g42920, chloroplastic; Flags: Precursor
gi|4512663|gb|AAD21717.1| hypothetical protein [Arabidopsis thaliana]
gi|20197867|gb|AAM15291.1| hypothetical protein [Arabidopsis thaliana]
gi|110738441|dbj|BAF01146.1| hypothetical protein [Arabidopsis thaliana]
gi|330255093|gb|AEC10187.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 559
Score = 295 bits (755), Expect = 4e-77, Method: Compositional matrix adjust.
Identities = 169/487 (34%), Positives = 261/487 (53%), Gaps = 13/487 (2%)
Query: 1 MKQLLQIQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIK 60
M++L QI A LI +GL + + L A +Y LVF IN+ F N +I+
Sbjct: 38 MRELKQIHASLIKTGLISDTVTASRVLAFCCASPSDMNYAYLVFTRINHKNPFVWNTIIR 97
Query: 61 AYSNSCVPDQGVVFYLQMI--KNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGV 118
+S S P+ + ++ M+ P T+ S+F + + G G HG+ +K G+
Sbjct: 98 GFSRSSFPEMAISIFIDMLCSSPSVKPQRLTYPSVFKAYGRLGQARDGRQLHGMVIKEGL 157
Query: 119 DFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDI 178
+ + + N++++MY G + A +F+ M D+++WNS++ G + G + A LFD
Sbjct: 158 EDDSFIRNTMLHMYVTCGCLIEAWRIFLGMIGFDVVAWNSMIMGFAKCGLIDQAQNLFDE 217
Query: 179 MPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEG 238
MP+RN VSWN MISG+ ++G +L +FREM + + + TM S+L AC +G
Sbjct: 218 MPQRNGVSWNSMISGFVRNGRFKDALDMFREMQEKDVKPDGFTMVSLLNACAYLGASEQG 277
Query: 239 RSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIH 298
R +H Y VR + N I+ TALID+Y KC +E VF+ + L CWN+MILG +
Sbjct: 278 RWIHEYIVRNRFELNSIVVTALIDMYCKCGCIEEGLNVFECAPKKQLSCWNSMILGLANN 337
Query: 299 GKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIK 358
G E + LF+ L + PD ++FIGV+ AC + + ++FR M + Y I+
Sbjct: 338 GFEERAMDLFSELER-----SGLEPDSVSFIGVLTACAHSGEVHRADEFFRLMKEKYMIE 392
Query: 359 PNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVE 418
P+ HY M N+ GA L EEAE +++ MP + D +++W SLLS CR G V M +
Sbjct: 393 PSIKHYTLMVNVLGGAGLLEEAEALIKNMPVEED-----TVIWSSLLSACRKIGNVEMAK 447
Query: 419 RLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLK-EV 477
R AK +DP + Y L N YA G +E+ R LMK+R+M + GC +++ EV
Sbjct: 448 RAAKCLKKLDPDETCGYVLLSNAYASYGLFEEAVEQRLLMKERQMEKEVGCSSIEVDFEV 507
Query: 478 VEKLKVG 484
E + G
Sbjct: 508 HEFISCG 514
>gi|225461979|ref|XP_002267354.1| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
[Vitis vinifera]
Length = 632
Score = 295 bits (754), Expect = 5e-77, Method: Compositional matrix adjust.
Identities = 154/448 (34%), Positives = 247/448 (55%), Gaps = 12/448 (2%)
Query: 39 YTVLVFKCI--NNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGS 96
Y +FKC+ P TF N+ +KA + P ++ + ++ + P+++T S+ +
Sbjct: 78 YAQQIFKCVEKQKPETFVWNSCLKALAEGDSPIDAIMLFYRLRQYDVCPDTFTCSSVLRA 137
Query: 97 CAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISW 156
C + G + HG+ K G L + N ++++Y G M AR +F +M RD+++W
Sbjct: 138 CLNLLDLSNGRILHGVVEKVGFRSNLYLQNMIVHLYASCGEMGEARLLFEKMPQRDVVTW 197
Query: 157 NSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFR 216
N +++ ++ GD A++LF MPERNV SW MI+GY + G ++ LF +M ++G +
Sbjct: 198 NIMIAQLIKQGDHEGAYDLFSRMPERNVRSWTSMIAGYVQCGKAKEAIHLFAKMEEAGVK 257
Query: 217 GNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRV 276
N+ T+ +VL AC + G +H Y+ R K N+ + LID+Y KC +E A +V
Sbjct: 258 CNEVTVVAVLAACADLGALDLGMRIHEYSNRHGFKRNVRISNTLIDMYVKCGCLEEACKV 317
Query: 277 FDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACV 336
F+ M +R +V W+AMI G +HG+ EE ++LF+ + + I P+ +TFIG++ AC
Sbjct: 318 FEEMEERTVVSWSAMIGGLAMHGRAEEALRLFSDM-----SQVGIEPNGVTFIGLLHACS 372
Query: 337 RAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSF 396
L++EGR++F M Y I P HY CM +L + A L EA E + MP M
Sbjct: 373 HMGLISEGRRFFASMTRDYGIIPQIEHYGCMVDLLSRAGLLHEAHEFILNMP-----MKP 427
Query: 397 ESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRE 456
++W +LL CR V M E K +++DP + Y L N+YA AG+WED ARVR+
Sbjct: 428 NGVVWGALLGACRVHKNVEMAEEAIKHLLELDPLNDGYYVVLSNIYAEAGRWEDTARVRK 487
Query: 457 LMKKRRMGRMPGCRLVDLKEVVEKLKVG 484
MK R++ + PG + + VV + G
Sbjct: 488 FMKDRQVKKTPGWSSITVDGVVHEFVAG 515
>gi|297832654|ref|XP_002884209.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297330049|gb|EFH60468.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 534
Score = 294 bits (753), Expect = 6e-77, Method: Compositional matrix adjust.
Identities = 162/487 (33%), Positives = 257/487 (52%), Gaps = 16/487 (3%)
Query: 6 QIQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSNS 65
+I A +I GL +SF ++ G DY +F ++NP F N++I+AY+++
Sbjct: 28 KIHACIIVHGLS-QSSFMVTKMVDLCDKLGDMDYATRLFNQVSNPNVFLYNSIIRAYTHN 86
Query: 66 CVPDQGVVFYLQMIKNGF-MPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPV 124
+ + Y Q+++ P+ +TF +F SCA G G HG K G F +
Sbjct: 87 SLYCDVIRIYKQLLRKTIEFPDRFTFPFMFKSCASLGSCYLGKQVHGHLYKFGPRFHVVT 146
Query: 125 MNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNV 184
N+LI+MY F + A +F +MS RD+ISWNS++SG+ R G M A LF +M ++ +
Sbjct: 147 ENALIDMYMKFDDLVDAHKVFDEMSERDVISWNSLLSGYARLGQMKKAKGLFHLMIDKTI 206
Query: 185 VSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGY 244
VSW MISGY+ G ++ FREM +G ++ ++ SVL +C G+ +H Y
Sbjct: 207 VSWTAMISGYTGIGCYVEAMDFFREMQLAGIEPDEISLISVLPSCAHLGSLELGKWIHMY 266
Query: 245 TVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEG 304
R L + ALI++YSKC + A ++F+ ++++ W+ MI G+ HG
Sbjct: 267 AERRGLLKQTGVCNALIEMYSKCGMLSQAIQLFEQTKGKDVISWSTMISGYAYHGNAHRA 326
Query: 305 IKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHY 364
+ F + V P+ ITF+G++ AC L +G KYF M Y+I+P HY
Sbjct: 327 FETFIEMQRAKV-----KPNGITFLGLLSACSHVGLWQQGLKYFDMMRQDYQIEPKIEHY 381
Query: 365 WCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSF 424
C+ ++ A A E A EI + MP D S +W SLLS CR +G + +
Sbjct: 382 GCLIDVLARAGKLERAVEITKTMPVKPD-----SKIWGSLLSSCRTKGNLDVALVAMDHL 436
Query: 425 VDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLKEVVEKLKVG 484
V+++P D Y L N+YA G+WEDV+R+R++++K M + PGC L+++ +V++ G
Sbjct: 437 VEVEPDDMGNYVLLANIYADLGKWEDVSRLRKIIRKENMKKTPGCSLIEVNNIVQEFVAG 496
Query: 485 H----FW 487
FW
Sbjct: 497 DNSKPFW 503
Score = 42.7 bits (99), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 37/173 (21%), Positives = 77/173 (44%), Gaps = 15/173 (8%)
Query: 236 NEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGH 295
NE + +H + L + + T ++DL K ++ A R+F+ +++ N+ +N++I +
Sbjct: 24 NEWKKIHACIIVHGLSQSSFMVTKMVDLCDKLGDMDYATRLFNQVSNPNVFLYNSIIRAY 83
Query: 296 CIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFY 355
+ + I+++ L+ T+ PD TF + +C G++ + Y
Sbjct: 84 THNSLYCDVIRIYKQLLRKTIE----FPDRFTFPFMFKSCASLGSCYLGKQVHGHL---Y 136
Query: 356 KIKPNF--AHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLS 406
K P F + ++Y + +A ++ +M E + I W SLLS
Sbjct: 137 KFGPRFHVVTENALIDMYMKFDDLVDAHKVFDEMSER------DVISWNSLLS 183
>gi|449446125|ref|XP_004140822.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Cucumis sativus]
Length = 809
Score = 294 bits (752), Expect = 8e-77, Method: Compositional matrix adjust.
Identities = 154/429 (35%), Positives = 247/429 (57%), Gaps = 10/429 (2%)
Query: 56 NAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALK 115
+A+I + + + ++ + ++ M K G M + VS +CA V G + H L+LK
Sbjct: 210 SALIACFQQNEMYEEAIRTFVGMHKIGVMVDEVVAVSALSACANLLVVNMGKLIHSLSLK 269
Query: 116 NGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHEL 175
G + + + N+LI MY G + AR +F + DLISWNS++SG+++ + A +
Sbjct: 270 IGTESYINLQNALIYMYSKCGDIMVARKLFDEAYLLDLISWNSMISGYLKCNLVDNAKAI 329
Query: 176 FDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARF 235
FD MPE++VVSW+ MISGY+++ +L LF+EM SGF+ ++ T+ SV++AC R A
Sbjct: 330 FDSMPEKDVVSWSSMISGYAQNDLFDETLALFQEMQMSGFKPDETTLVSVISACARLAAL 389
Query: 236 NEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGH 295
+G+ VH Y R L N+IL T LID+Y KC VE A VF M ++ + WNA+ILG
Sbjct: 390 EQGKWVHAYIKRNGLTINVILGTTLIDMYMKCGCVETALEVFYGMIEKGISTWNALILGL 449
Query: 296 CIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFY 355
++G E + +F+ + ++P+EITF+GV+ AC L+ EG+ +F MI +
Sbjct: 450 AMNGLVESSLDMFS-----NMKKCHVTPNEITFMGVLGACRHMGLVDEGQHHFYSMIHDH 504
Query: 356 KIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVA 415
KI+PN HY CM +L A +EAEE+L +MP M+ + W +LL C+ G
Sbjct: 505 KIQPNVKHYGCMVDLLGRAGKLQEAEELLNRMP-----MTPDVATWGALLGACKKHGDSE 559
Query: 416 MVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLK 475
M R+ + +++ P + L N+YA G+W+DV +R +M K R+ ++PGC +++
Sbjct: 560 MGRRVGRKLIELQPDHDGFHVLLSNIYASKGKWDDVLEIRGMMTKHRVLKIPGCSMIEAN 619
Query: 476 EVVEKLKVG 484
V+ + G
Sbjct: 620 GVIHEFLAG 628
Score = 143 bits (361), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 111/432 (25%), Positives = 180/432 (41%), Gaps = 60/432 (13%)
Query: 17 FFNNSFWTINLLKHSADFG--SPDYTVLVFKCINNPGTFCVNAVIKAYSNSCVPDQGVVF 74
F ++ L+K S F DYT +F I N F N +I+AY + P
Sbjct: 6 FIRETYAASRLIKFSTHFPFIHIDYTRRIFNFIENTNCFMWNMMIRAYIQTNSPHFAFTL 65
Query: 75 YLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGC 134
Y M+ N ++YT+ L +C+ H LK G D ++ V N+LIN +
Sbjct: 66 YKSMLSNYLGADNYTYPLLIQACSIRRSEWEAKQVHNHVLKLGFDSDVYVRNTLINCFSV 125
Query: 135 FGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGY 194
M A +F + S D +SWNSI++G++ G++ A ++ MPER++++ N MI +
Sbjct: 126 CSNMTDACRVFNESSVLDSVSWNSILAGYIEIGNVEEAKHIYHQMPERSIIASNSMIVLF 185
Query: 195 SKSGNPGCSLKLFREMM-------------------------------KSGFRGNDKTMA 223
G + KLF EM+ K G ++
Sbjct: 186 GMRGLVVEACKLFDEMLEKDMVTWSALIACFQQNEMYEEAIRTFVGMHKIGVMVDEVVAV 245
Query: 224 SVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADR 283
S L+AC N G+ +H +++ + I L ALI +YSKC + VA+++FD
Sbjct: 246 SALSACANLLVVNMGKLIHSLSLKIGTESYINLQNALIYMYSKCGDIMVARKLFDEAYLL 305
Query: 284 NLVCWNAMILGH-----------CIHGKPEEGIKLFTALVNGTVAG-------------- 318
+L+ WN+MI G+ PE+ + ++++++G
Sbjct: 306 DLISWNSMISGYLKCNLVDNAKAIFDSMPEKDVVSWSSMISGYAQNDLFDETLALFQEMQ 365
Query: 319 -GSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELT 377
PDE T + VI AC R L +G K+ I + N + ++Y
Sbjct: 366 MSGFKPDETTLVSVISACARLAALEQG-KWVHAYIKRNGLTINVILGTTLIDMYMKCGCV 424
Query: 378 EEAEEILRKMPE 389
E A E+ M E
Sbjct: 425 ETALEVFYGMIE 436
>gi|356570919|ref|XP_003553630.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g06540-like [Glycine max]
Length = 622
Score = 294 bits (752), Expect = 8e-77, Method: Compositional matrix adjust.
Identities = 155/485 (31%), Positives = 263/485 (54%), Gaps = 13/485 (2%)
Query: 2 KQLLQIQAHLITSGLFFNNSFWTINLLKHSADFGSP--DYTVLVFKCINNPGTFCVNAVI 59
+ L I AH++ + LFF+ F L+ D + Y + V I NP F NA+I
Sbjct: 31 RDLKIIHAHMLRTHLFFD-VFAASRLIAFCIDSTTNLLHYAIRVASQIQNPNLFIYNALI 89
Query: 60 KAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVD 119
+ S S P+ +Y++ ++ G +P++ T L +CA+ G HG A+K+G +
Sbjct: 90 RGCSTSENPENSFHYYIKALRFGLLPDNITHPFLVKACAQLENAPMGMQTHGQAIKHGFE 149
Query: 120 FELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIM 179
+ V NSL++MY G ++ AR++F +M D++SW +++G+ R GD +A ELFD M
Sbjct: 150 QDFYVQNSLVHMYASVGDINAARSVFQRMCRFDVVSWTCMIAGYHRCGDAKSARELFDRM 209
Query: 180 PERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGR 239
PERN+V+W+ MISGY+++ +++ F + G N+ M V+++C G
Sbjct: 210 PERNLVTWSTMISGYARNNCFEKAVETFEALQAEGVVANETVMVGVISSCAHLGALAMGE 269
Query: 240 SVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHG 299
H Y +R L N+IL TA++D+Y++C VE A VF+ + +++++CW A+I G +HG
Sbjct: 270 KAHEYVMRNKLSLNLILGTAVVDMYARCGNVEKAVMVFEQLPEKDVLCWTALIAGLAMHG 329
Query: 300 KPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKP 359
E+ + F+ + A P +ITF V+ AC A ++ G + F M + ++P
Sbjct: 330 YAEKALWYFSEM-----AKKGFVPRDITFTAVLTACSHAGMVERGLEIFESMKRDHGVEP 384
Query: 360 NFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVER 419
HY CM +L A +AE+ + KMP + + +W +LL CR V + ER
Sbjct: 385 RLEHYGCMVDLLGRAGKLRKAEKFVLKMPVKPN-----APIWRALLGACRIHKNVEVGER 439
Query: 420 LAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLKEVVE 479
+ K ++M P+ Y L N+YA A +W+DV +R++MK + + + PG L+++ V
Sbjct: 440 VGKILLEMQPEYSGHYVLLSNIYARANKWKDVTVMRQMMKDKGVRKPPGYSLIEIDGKVH 499
Query: 480 KLKVG 484
+ +G
Sbjct: 500 EFTIG 504
>gi|449485565|ref|XP_004157209.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Cucumis sativus]
Length = 953
Score = 293 bits (751), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 154/429 (35%), Positives = 247/429 (57%), Gaps = 10/429 (2%)
Query: 56 NAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALK 115
+A+I + + + ++ + ++ M K G M + VS +CA V G + H L+LK
Sbjct: 345 SALIACFQQNEMYEEAIRTFVGMHKIGVMVDEVVAVSALSACANLLVVNMGKLIHSLSLK 404
Query: 116 NGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHEL 175
G + + + N+LI MY G + AR +F + DLISWNS++SG+++ + A +
Sbjct: 405 IGTESYINLQNALIYMYSKCGDIMVARKLFDEAYLLDLISWNSMISGYLKCNLVDNAKAI 464
Query: 176 FDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARF 235
FD MPE++VVSW+ MISGY+++ +L LF+EM SGF+ ++ T+ SV++AC R A
Sbjct: 465 FDSMPEKDVVSWSSMISGYAQNDLFDETLALFQEMQMSGFKPDETTLVSVISACARLAAL 524
Query: 236 NEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGH 295
+G+ VH Y R L N+IL T LID+Y KC VE A VF M ++ + WNA+ILG
Sbjct: 525 EQGKWVHAYIKRNGLTINVILGTTLIDMYMKCGCVETALEVFYGMIEKGISTWNALILGL 584
Query: 296 CIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFY 355
++G E + +F+ + ++P+EITF+GV+ AC L+ EG+ +F MI +
Sbjct: 585 AMNGLVESSLDMFS-----NMKKCHVTPNEITFMGVLGACRHMGLVDEGQHHFYSMIHDH 639
Query: 356 KIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVA 415
KI+PN HY CM +L A +EAEE+L +MP M+ + W +LL C+ G
Sbjct: 640 KIQPNVKHYGCMVDLLGRAGKLQEAEELLNRMP-----MTPDVATWGALLGACKKHGDSE 694
Query: 416 MVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLK 475
M R+ + +++ P + L N+YA G+W+DV +R +M K R+ ++PGC +++
Sbjct: 695 MGRRVGRKLIELQPDHDGFHVLLSNIYASKGKWDDVLEIRGMMTKHRVLKIPGCSMIEAN 754
Query: 476 EVVEKLKVG 484
V+ + G
Sbjct: 755 GVIHEFLAG 763
Score = 126 bits (316), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 97/387 (25%), Positives = 161/387 (41%), Gaps = 58/387 (14%)
Query: 60 KAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVD 119
+AY + P Y M+ N ++YT+ L +C+ H LK G D
Sbjct: 186 RAYIQTNSPHFAFTLYKSMLSNYLGADNYTYPLLIQACSIRRSEWEAKQVHNHVLKLGFD 245
Query: 120 FELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIM 179
++ V N+LIN + M A +F + S D +SWNSI++G++ G++ A ++ M
Sbjct: 246 SDVYVRNTLINCFSVCSNMTDACRVFNESSVLDSVSWNSILAGYIEIGNVEEAKHIYHQM 305
Query: 180 PERNVVSWNIMISGYSKSGNPGCSLKLFREMM---------------------------- 211
PER++++ N MI + G + KLF EM+
Sbjct: 306 PERSIIASNSMIVLFGMRGLVVEACKLFDEMLEKDMVTWSALIACFQQNEMYEEAIRTFV 365
Query: 212 ---KSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQ 268
K G ++ S L+AC N G+ +H +++ + I L ALI +YSKC
Sbjct: 366 GMHKIGVMVDEVVAVSALSACANLLVVNMGKLIHSLSLKIGTESYINLQNALIYMYSKCG 425
Query: 269 KVEVAQRVFDSMADRNLVCWNAMILGH-----------CIHGKPEEGIKLFTALVNGTVA 317
+ VA+++FD +L+ WN+MI G+ PE+ + ++++++G
Sbjct: 426 DIMVARKLFDEAYLLDLISWNSMISGYLKCNLVDNAKAIFDSMPEKDVVSWSSMISGYAQ 485
Query: 318 G---------------GSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFA 362
PDE T + VI AC R L +G K+ I + N
Sbjct: 486 NDLFDETLALFQEMQMSGFKPDETTLVSVISACARLAALEQG-KWVHAYIKRNGLTINVI 544
Query: 363 HYWCMANLYAGAELTEEAEEILRKMPE 389
+ ++Y E A E+ M E
Sbjct: 545 LGTTLIDMYMKCGCVETALEVFYGMIE 571
>gi|225427576|ref|XP_002268530.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g48910-like [Vitis vinifera]
Length = 631
Score = 293 bits (750), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 168/501 (33%), Positives = 281/501 (56%), Gaps = 29/501 (5%)
Query: 1 MKQLLQIQAHLITSGLFFNNSFWTINLLKHSA--DFGSPDYTVLVFKCINNPGTFCVNAV 58
M+ L Q+ A +I + + LL+ SA D DY +F+ ++ P F N +
Sbjct: 24 MQDLKQLHAQMIKTAQI-RDPLAAAELLRFSAVSDHRDLDYARKIFRSMHRPNCFSYNTL 82
Query: 59 IKAYSNSCVPDQGVVFYLQMIKN-GFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNG 117
I+A S S P ++ +++M+++ PN +TF S+F +C + + G HGLA+K G
Sbjct: 83 IRALSESNDPCDALLVFIEMVEDCSVEPNCFTFPSVFKACGRAERLREGRQVHGLAVKFG 142
Query: 118 VDFELPVMNSLINMYGCFGAMDCARNMF-----------VQMSPR----DLISWNSIVSG 162
+D + V+++++ MY G M+ A +F ++ R D++ WN ++ G
Sbjct: 143 LDSDEFVVSNVVRMYLSCGVMEDAHRLFYRRVFVDGCDGIRDKKRRVDGDVVLWNVMIDG 202
Query: 163 HVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTM 222
+VR G++ A LFD MP+R+VVSWN+MI+GY++SG+ ++++FREM + N T+
Sbjct: 203 YVRIGELEVARNLFDEMPQRSVVSWNVMIAGYAQSGHFKEAVEVFREMQMAEVPPNYVTL 262
Query: 223 ASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMAD 282
SVL A R G+ VH Y VR ++ + +L +ALID+Y+KC +E A +VF+ +
Sbjct: 263 VSVLPAMSRLGALELGKWVHLYAVRNNIGVDDVLGSALIDMYAKCGSIEKALQVFEGLPK 322
Query: 283 RNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLT 342
RN+V W+ +I G +HG+ ++ + F + V P ++T+IG++ AC A L+
Sbjct: 323 RNVVTWSTIIAGLAMHGRAKDTLDHFEDMERAGVM-----PSDVTYIGLLSACSHAGLVN 377
Query: 343 EGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWV 402
EGR +F M+ ++P HY CM +L A L EE+EE++ MP D+ ++W
Sbjct: 378 EGRWFFDHMVRVSGLEPRIEHYGCMVDLLGRAGLLEESEELILNMPIKPDD-----VIWK 432
Query: 403 SLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRR 462
+LL C+ G V M +R+A+ +++ P D Y L N+YA G WE VA+VR +MK+
Sbjct: 433 ALLGACKMHGNVEMGKRVAEHLMELAPHDSGSYVALSNIYASLGNWEGVAKVRLMMKEMD 492
Query: 463 MGRMPGCRLVDLKEVVEKLKV 483
+ + PGC ++L V+ + V
Sbjct: 493 VRKDPGCSWIELDGVIHEFLV 513
>gi|147775281|emb|CAN61593.1| hypothetical protein VITISV_030555 [Vitis vinifera]
Length = 673
Score = 293 bits (750), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 164/523 (31%), Positives = 278/523 (53%), Gaps = 53/523 (10%)
Query: 1 MKQLLQIQAHLITSGLFFNNSFWTINLLKHSADFGSPDY-----TVLVFKCINNPGTFCV 55
+ L Q A ++ +G +S+ +L+K A+ + Y ++ VF + P F
Sbjct: 48 LHHLKQAHALILRTG-HLQDSYIAGSLVKSYANVSTNRYLSFESSLRVFDFVRKPNVFLW 106
Query: 56 NAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALK 115
N +IK + P + ++ Y +M+ PN YT+ ++ +C+ +G V G H +K
Sbjct: 107 NCMIKVCIENNEPFKAILLYYEMVVAHSRPNKYTYPAVLKACSDSGVVAEGVQVHAHLVK 166
Query: 116 NGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPR-DLISWNSIVSGHVRSGDMSAAHE 174
+G+ + +++S I MY FG + AR + D + WN+++ G++R G++ AA E
Sbjct: 167 HGLGGDGHILSSAIRMYASFGRLVEARRILDDKGGEVDAVCWNAMIDGYLRFGEVEAARE 226
Query: 175 LFDIMPERNVVS-WNIMISGYSKSG----------------------------NPGC--- 202
LF+ MP+R+++S WN MISG+S+ G GC
Sbjct: 227 LFEGMPDRSMISTWNAMISGFSRCGMVEVAREFFDEMKERDEISWSAMIDGYIQEGCFME 286
Query: 203 SLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALID 262
+L++F +M K R + SVL+AC ++GR +H Y R S++ + +L T+L+D
Sbjct: 287 ALEIFHQMQKEKIRPRKFVLPSVLSACANLGALDQGRWIHTYAKRNSIQLDGVLGTSLVD 346
Query: 263 LYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSIS 322
+Y+KC ++++A VF+ M+++ + WNAMI G +HG+ E+ I LF+ + I
Sbjct: 347 MYAKCGRIDLAWEVFEKMSNKEVSSWNAMIGGLAMHGRAEDAIDLFSKM--------DIY 398
Query: 323 PDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEE 382
P+EITF+GV+ AC L+ +G F M Y ++P HY C+ +L A L EAE+
Sbjct: 399 PNEITFVGVLNACAHGGLVQKGLTIFNSMRKEYGVEPQIEHYGCIVDLLGRAGLLTEAEK 458
Query: 383 ILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVY 442
++ +P + +W +LL CR G V + ER+ K ++++PQ+ RY L N+Y
Sbjct: 459 VVSSIPTEPT-----PAVWGALLGACRKHGNVELGERVGKILLELEPQNSGRYTLLSNIY 513
Query: 443 AVAGQWEDVARVRELMKKRRMGRMPGCRLVDL-KEVVEKLKVG 484
A AG+WE+V VR+LMK+R + PG ++DL + V K +G
Sbjct: 514 AKAGRWEEVGEVRKLMKERGIKTTPGTSIIDLGRGEVHKFIIG 556
>gi|115487922|ref|NP_001066448.1| Os12g0233200 [Oryza sativa Japonica Group]
gi|77553539|gb|ABA96335.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
gi|113648955|dbj|BAF29467.1| Os12g0233200 [Oryza sativa Japonica Group]
Length = 704
Score = 293 bits (750), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 160/462 (34%), Positives = 255/462 (55%), Gaps = 13/462 (2%)
Query: 17 FFNNSFWTINLLKH-SADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFY 75
F S N L H A+ S D VF + ++ Y+ + + D+ +
Sbjct: 173 FVGESVLVGNALVHFYANHKSLDDAGKVFDEMPERDVVSWTTLVDGYARAGLADEAWRLF 232
Query: 76 LQMIKNGFM-PNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGC 134
+M+ G M PN+ T V+ + + G + G M H + GV + + N+L++M+G
Sbjct: 233 CRMVVVGGMRPNAVTLVAAVSAIGQMGLLAFGIMLHKYVTEGGVARSVNLDNALVDMFGK 292
Query: 135 FGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGY 194
G + AR +F M +D+ SW S+V+ + + GD+ +A +LF MP RNVVSW+ MI+ Y
Sbjct: 293 CGCVRYAREVFDGMEVKDVYSWTSMVNAYAKCGDLESAEQLFKDMPRRNVVSWSCMIAAY 352
Query: 195 SKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVH-GYTVRTSLKPN 253
S+ P ++ LFREM+ +G D T+ SVL+AC + + GR ++ Y V +
Sbjct: 353 SQLNQPEEAVWLFREMIAAGVDPIDATLVSVLSACAQLGCLDLGRWIYENYIVSNKIGLT 412
Query: 254 IILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVN 313
+ L ALID+++KC V A ++FD MA+RN+V WN MI+ H +HG+ EE I+LF L
Sbjct: 413 VNLGNALIDMFAKCGDVGEASKLFDEMAERNVVSWNTMIMAHAVHGQSEEAIRLFEQL-- 470
Query: 314 GTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAG 373
G +I PD+ITF+G++ +C + L++EGR+YF++M FY+I+P HY CM +L
Sbjct: 471 ---KGENIVPDQITFLGLLASCSHSGLVSEGRRYFKEMEMFYRIEPRVEHYACMIDLLGK 527
Query: 374 AELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFS 433
L EEA E+ R MP + D W +LL+ CR G V + +A V++DP D
Sbjct: 528 VGLLEEAFEVARGMPMEADEAG-----WGALLNACRMHGNVEIGACVADKLVELDPSDSG 582
Query: 434 RYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLK 475
Y + +YA +W+ V +R M+ R + + PGC ++++
Sbjct: 583 IYVLMSQIYASKNKWDQVKMLRMTMRDRGVKKNPGCSSIEVE 624
Score = 102 bits (254), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 97/431 (22%), Positives = 173/431 (40%), Gaps = 77/431 (17%)
Query: 2 KQLLQIQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCIN---NPGTFCVNAV 58
++LLQ+ A L +GL + F LL A P P + + +
Sbjct: 49 RRLLQLHALLTVTGLA-AHRFPASRLLAFCALSTPPRLAHAAAILARASPGPNAYMLGTM 107
Query: 59 IKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGM------CHGL 112
++ + + +P + + + +++++ ++ TFV + A E GG H
Sbjct: 108 MRGFLRARLPARALGLFRRVVRDRLPADARTFVFAVKAAAAAAESEHGGTPSGGEAIHCA 167
Query: 113 ALKNG-VDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSA 171
ALK G V + V N+L++ Y ++D A +F +M RD++SW ++V G+ R+G
Sbjct: 168 ALKCGFVGESVLVGNALVHFYANHKSLDDAGKVFDEMPERDVVSWTTLVDGYARAGLADE 227
Query: 172 AHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGR 231
A LF C R ++ G R N T+ + ++A G+
Sbjct: 228 AWRLF-------------------------C-----RMVVVGGMRPNAVTLVAAVSAIGQ 257
Query: 232 SARFNEGRSVHGYTVRTSLKPNIILDTALIDL---------------------------- 263
G +H Y + ++ LD AL+D+
Sbjct: 258 MGLLAFGIMLHKYVTEGGVARSVNLDNALVDMFGKCGCVRYAREVFDGMEVKDVYSWTSM 317
Query: 264 ---YSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGS 320
Y+KC +E A+++F M RN+V W+ MI + +PEE + LF ++
Sbjct: 318 VNAYAKCGDLESAEQLFKDMPRRNVVSWSCMIAAYSQLNQPEEAVWLFREMI-----AAG 372
Query: 321 ISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEA 380
+ P + T + V+ AC + L GR + I KI + +++A EA
Sbjct: 373 VDPIDATLVSVLSACAQLGCLDLGRWIYENYIVSNKIGLTVNLGNALIDMFAKCGDVGEA 432
Query: 381 EEILRKMPEDN 391
++ +M E N
Sbjct: 433 SKLFDEMAERN 443
>gi|147770365|emb|CAN78152.1| hypothetical protein VITISV_040250 [Vitis vinifera]
Length = 606
Score = 293 bits (749), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 153/448 (34%), Positives = 247/448 (55%), Gaps = 12/448 (2%)
Query: 39 YTVLVFKCI--NNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGS 96
Y +F+C+ P TF N+ +KA + P ++ + ++ + P+++T S+ +
Sbjct: 78 YAQQIFECVEKQKPETFVWNSCLKALAEGDSPIDAIMLFYRLRQYDVCPDTFTCSSVLRA 137
Query: 97 CAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISW 156
C + G + HG+ K G L + N ++++Y G M AR +F +M RD+++W
Sbjct: 138 CLNLLDLSNGRILHGVVEKVGFRSNLYLQNMIVHLYASCGEMGEARLLFEKMPQRDVVTW 197
Query: 157 NSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFR 216
N +++ ++ GD A++LF MPERNV SW MI+GY + G ++ LF +M ++G +
Sbjct: 198 NIMIAQLIKQGDHEGAYDLFSRMPERNVRSWTSMIAGYVQCGKAKEAIHLFAKMEEAGVK 257
Query: 217 GNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRV 276
N+ T+ +VL AC + G +H Y+ R K N+ + LID+Y KC +E A +V
Sbjct: 258 CNEVTVVAVLAACADLGALDLGMRIHEYSNRHGFKRNVRISNTLIDMYVKCGCLEEACKV 317
Query: 277 FDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACV 336
F+ M +R +V W+AMI G +HG+ EE ++LF+ + + I P+ +TFIG++ AC
Sbjct: 318 FEEMEERTVVSWSAMIGGLAMHGRAEEALRLFSDM-----SQVGIEPNGVTFIGLLHACS 372
Query: 337 RAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSF 396
L++EGR++F M Y I P HY CM +L + A L EA E + MP M
Sbjct: 373 HMGLISEGRRFFASMTRDYGIIPQIEHYGCMVDLLSRAGLLHEAHEFILNMP-----MKP 427
Query: 397 ESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRE 456
++W +LL CR V M E K +++DP + Y L N+YA AG+WED ARVR+
Sbjct: 428 NGVVWGALLGACRVHKNVEMAEEAIKHLLELDPLNDGYYVVLSNIYAEAGRWEDTARVRK 487
Query: 457 LMKKRRMGRMPGCRLVDLKEVVEKLKVG 484
MK R++ + PG + + VV + G
Sbjct: 488 FMKDRQVKKTPGWSSITVDGVVHEFVAG 515
>gi|449525261|ref|XP_004169636.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g44230-like [Cucumis sativus]
Length = 650
Score = 293 bits (749), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 151/472 (31%), Positives = 265/472 (56%), Gaps = 16/472 (3%)
Query: 3 QLLQIQAHLITSGLFFNNSFWTINLLKHSADFGSP--DYTVLVFKCINNPGTFCVNAVIK 60
Q+ Q+ AH+I +GL S+ L++ P Y +LVF +N P F A+I+
Sbjct: 57 QIKQVHAHIIRNGLS-QCSYVLTKLIRMLTKVDVPMGSYPLLVFGQVNYPNPFLWTAMIR 115
Query: 61 AYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLA-LKNGVD 119
Y+ + + FY +M ++G P S+TF +LF +C ++ G H L G
Sbjct: 116 GYALQGLLSESTNFYTRMRRDGVGPVSFTFSALFKACGAALNMDLGKQVHAQTILIGGFA 175
Query: 120 FELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIM 179
+L V NS+I++Y G + CAR +F +MS RD++SW ++ + + GDM +A LFD +
Sbjct: 176 SDLYVGNSMIDLYVKCGFLGCARKVFDEMSERDVVSWTELIVAYAKYGDMESASGLFDDL 235
Query: 180 PERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGR 239
P +++V+W M++GY+++G P +L+ F++M G ++ T+A V++AC +
Sbjct: 236 PSKDMVAWTAMVTGYAQNGRPKEALEYFQKMQDVGMETDEVTLAGVISACAQLGAVKHAN 295
Query: 240 SVHGYTVRTSLKP--NIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCI 297
+ R+ P N+++ +ALID+YSKC + A +VF+ M +RN+ +++MILG+ +
Sbjct: 296 WIRDIAERSGFGPSGNVVVGSALIDMYSKCGSPDEAYKVFEVMKERNVFSYSSMILGYAM 355
Query: 298 HGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKI 357
HG+ ++LF ++ I P+++TFIG++ AC A L+ +GR+ F +M F+ +
Sbjct: 356 HGRAHSALQLFHDMLK-----TEIRPNKVTFIGILSACSHAGLVEQGRQLFAKMEKFFGV 410
Query: 358 KPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMV 417
P+ HY CM +L A EEA ++++ MP M +W +LL CR G +
Sbjct: 411 APSPDHYACMVDLLGRAGCLEEALDLVKTMP-----MEPNGGVWGALLGACRIHGNPDIA 465
Query: 418 ERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGC 469
+ A ++P Y L N+YA AG+WE+V+++R++++++ + PGC
Sbjct: 466 QIAANELFKLEPNGIGNYILLSNIYASAGRWEEVSKLRKVIREKGFKKNPGC 517
>gi|15239745|ref|NP_199702.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75170778|sp|Q9FI80.1|PP425_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g48910
gi|10177180|dbj|BAB10314.1| selenium-binding protein-like [Arabidopsis thaliana]
gi|15810559|gb|AAL07167.1| putative selenium-binding protein [Arabidopsis thaliana]
gi|332008359|gb|AED95742.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 646
Score = 293 bits (749), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 180/523 (34%), Positives = 275/523 (52%), Gaps = 39/523 (7%)
Query: 1 MKQLLQIQAHLITSGLFFNNSFWTINLLK-------HSADFGSPDYTVLVFKCINNPGTF 53
++ L QI A I SG ++ +L+ H D DY +F + F
Sbjct: 36 IRDLSQIHAVFIKSGQM-RDTLAAAEILRFCATSDLHHRDL---DYAHKIFNQMPQRNCF 91
Query: 54 CVNAVIKAYSNSCVPDQ--GVVFYLQMIKNGFM-PNSYTFVSLFGSCAKTGCVERGGMCH 110
N +I+ +S S + + +M+ + F+ PN +TF S+ +CAKTG ++ G H
Sbjct: 92 SWNTIIRGFSESDEDKALIAITLFYEMMSDEFVEPNRFTFPSVLKACAKTGKIQEGKQIH 151
Query: 111 GLALKNGVDFELPVMNSLINMYGCFGAMDCARNMF---------VQMSPR-----DLISW 156
GLALK G + VM++L+ MY G M AR +F V M+ R +++ W
Sbjct: 152 GLALKYGFGGDEFVMSNLVRMYVMCGFMKDARVLFYKNIIEKDMVVMTDRRKRDGEIVLW 211
Query: 157 NSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFR 216
N ++ G++R GD AA LFD M +R+VVSWN MISGYS +G ++++FREM K R
Sbjct: 212 NVMIDGYMRLGDCKAARMLFDKMRQRSVVSWNTMISGYSLNGFFKDAVEVFREMKKGDIR 271
Query: 217 GNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRV 276
N T+ SVL A R G +H Y + ++ + +L +ALID+YSKC +E A V
Sbjct: 272 PNYVTLVSVLPAISRLGSLELGEWLHLYAEDSGIRIDDVLGSALIDMYSKCGIIEKAIHV 331
Query: 277 FDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACV 336
F+ + N++ W+AMI G IHG+ + I F + V P ++ +I ++ AC
Sbjct: 332 FERLPRENVITWSAMINGFAIHGQAGDAIDCFCKMRQAGV-----RPSDVAYINLLTACS 386
Query: 337 RAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSF 396
L+ EGR+YF QM+ ++P HY CM +L + L +EAEE + MP D+
Sbjct: 387 HGGLVEEGRRYFSQMVSVDGLEPRIEHYGCMVDLLGRSGLLDEAEEFILNMPIKPDD--- 443
Query: 397 ESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRE 456
++W +LL CR QG V M +R+A +DM P D Y L N+YA G W +V+ +R
Sbjct: 444 --VIWKALLGACRMQGNVEMGKRVANILMDMVPHDSGAYVALSNMYASQGNWSEVSEMRL 501
Query: 457 LMKKRRMGRMPGCRLVDLKEVVEKLKVGHFWRGGMKEEVNKMM 499
MK++ + + PGC L+D+ V+ + V K E+N M+
Sbjct: 502 RMKEKDIRKDPGCSLIDIDGVLHEFVVEDDSHPKAK-EINSML 543
>gi|449479818|ref|XP_004155716.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g08510-like [Cucumis sativus]
Length = 512
Score = 292 bits (748), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 157/485 (32%), Positives = 268/485 (55%), Gaps = 17/485 (3%)
Query: 1 MKQLLQIQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIK 60
M QL QI A+ + +GL +++ + I L D Y +F I P + N I+
Sbjct: 1 MNQLKQIHAYSLRNGL--DHTKFLIEKLLQLPDL---PYACTLFDQIPKPSVYLYNKFIQ 55
Query: 61 AYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDF 120
+S+ P + + Y QM G PN Y+F LF +CA V G M H K+G
Sbjct: 56 TFSSIGHPHRCWLLYCQMCSQGCSPNQYSFTFLFPACASLFNVYPGQMLHSHFCKSGFAS 115
Query: 121 ELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMP 180
++ M +L++MY G + AR +F +M RD+ +WNS+++G+ RSG M AA ELF+ MP
Sbjct: 116 DMFAMTALLDMYAKLGMLRSARQLFDEMPVRDIPTWNSLIAGYARSGHMEAALELFNKMP 175
Query: 181 ERNVVSWNIMISGYSKSGNPGCSLKLFREMM-KSGFRGNDKTMASVLTACGRSARFNEGR 239
RNV+SW +ISGY+++G +L++F + + G + N+ ++ASVL AC + + G+
Sbjct: 176 VRNVISWTALISGYAQNGKYAKALEMFIGLENEKGTKPNEVSIASVLPACSQLGALDIGK 235
Query: 240 SVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSM-ADRNLVCWNAMILGHCIH 298
+ Y N + A+++L+++C +E AQ+VFD + + RNL WN MI+G +H
Sbjct: 236 RIEAYARNNGFFKNAYVSNAVLELHARCGNIEEAQQVFDEIGSKRNLCSWNTMIMGLAVH 295
Query: 299 GKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIK 358
G+ + ++L+ ++ + PD++TF+G++ AC ++ EGR+ F M +++
Sbjct: 296 GRCIDALQLYDQMLI-----RKMRPDDVTFVGLLLACTHGGMVAEGRQLFESMESKFQVA 350
Query: 359 PNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVE 418
P HY C+ +L A +EA +++ MP M+ +S++W +LL C F G V + E
Sbjct: 351 PKLEHYGCLVDLLGRAGELQEAYNLIQNMP-----MAPDSVIWGTLLGACSFHGNVELGE 405
Query: 419 RLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLKEVV 478
A+S ++P + Y L N+YA+AG W VAR+R++MK + + G +++ + +
Sbjct: 406 VAAESLFKLEPWNPGNYVILSNIYALAGDWSGVARLRKMMKGGHITKRAGYSYIEVGDGI 465
Query: 479 EKLKV 483
+ V
Sbjct: 466 HEFIV 470
>gi|359478743|ref|XP_002282912.2| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
mitochondrial-like [Vitis vinifera]
Length = 642
Score = 292 bits (748), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 154/459 (33%), Positives = 248/459 (54%), Gaps = 19/459 (4%)
Query: 56 NAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALK 115
N++I Y + + FY +M G P+ T + + SCA+ ++ G H +
Sbjct: 177 NSMINGYVRRGWAYEALNFYREMKVEGIKPDEVTMIGVVSSCAQLEDLDLGRESHCYIEE 236
Query: 116 NGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHEL 175
NG+ +P+ N+L++MY G ++ AR +F M+ + ++SW ++V G+ +SG + A +L
Sbjct: 237 NGLKLTVPLANALMDMYMKCGNLESARKLFDSMTNKTMVSWTTMVVGYAQSGLLDMAWKL 296
Query: 176 FDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARF 235
FD MP+++VV WN MI GY + +L LF EM ++ TM S L+AC +
Sbjct: 297 FDEMPDKDVVPWNAMIGGYVHANRGKEALALFNEMQAMNINPDEVTMVSCLSACSQLGAL 356
Query: 236 NEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGH 295
+ G +H Y + L N+ L TALID+Y+KC K+ A +VF + RN + W A+I G
Sbjct: 357 DVGIWIHHYIEKHELSLNVALGTALIDMYAKCGKITKAIQVFQELPGRNSLTWTAIISGL 416
Query: 296 CIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFY 355
+HG I F+ +++ S+ PDE+TF+G++ AC L+ EGRKYF QM +
Sbjct: 417 ALHGNAHGAIAYFSEMID-----NSVMPDEVTFLGLLSACCHGGLVEEGRKYFSQMSSKF 471
Query: 356 KIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVA 415
+ P HY CM +L A L EEAEE+++ MP + D +++W +L CR G V
Sbjct: 472 NLSPKLKHYSCMVDLLGRAGLLEEAEELIKSMPIEAD-----AVVWGALFFACRIHGNVL 526
Query: 416 MVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLK 475
M ER A + MDP D Y L N+Y A W++ + R+LM++R + + PGC +++
Sbjct: 527 MGERAASKLLQMDPHDSGIYVLLANMYGEAEMWKEAGKARKLMRQRGVEKTPGCSSIEVN 586
Query: 476 EVVEKLKVGHFWRGGMKEEVNKMMECRQSRSLATVSKQL 514
+V + V R + ++ EC L +++QL
Sbjct: 587 GIVYEFIV----RDKSHPQSEQIYEC-----LIQLTRQL 616
Score = 169 bits (428), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 118/441 (26%), Positives = 208/441 (47%), Gaps = 68/441 (15%)
Query: 1 MKQLLQIQAHLITSGLFFNNSFWTINLLKHSA--DFGSPDYTVLVFKCINNPGTFCVNAV 58
+ QL QIQ+ ++ +GL + F + L+ A ++ DY + NP TF N
Sbjct: 19 ISQLKQIQSQMVLTGLI-EDGFASSRLIAFCAISEWRDLDYCTNILFNTRNPNTFSWNVA 77
Query: 59 IKAYSNSCVPDQGVVFYLQMIK-NGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNG 117
I+ + +S P + VV Y ++++ +G P++YT+ LF +CA+ + G G L G
Sbjct: 78 IRGFLDSENPREAVVLYKRVLQCDGTKPDNYTYPLLFKACARLSLIRMGSEILGHVLHLG 137
Query: 118 VDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFD 177
D ++ V N++I++ G +D AR MF + RDL+SWNS+++G+VR G A+E
Sbjct: 138 FDSDIFVSNAVIHLLVSCGDLDGARKMFDKSCVRDLVSWNSMINGYVRRG---WAYE--- 191
Query: 178 IMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNE 237
+L +REM G + ++ TM V+++C + +
Sbjct: 192 -------------------------ALNFYREMKVEGIKPDEVTMIGVVSSCAQLEDLDL 226
Query: 238 GRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCI 297
GR H Y LK + L AL+D+Y KC +E A+++FDSM ++ +V W M++G+
Sbjct: 227 GRESHCYIEENGLKLTVPLANALMDMYMKCGNLESARKLFDSMTNKTMVSWTTMVVGYAQ 286
Query: 298 HGKPEEGIKLF-----------TALVNGTVAGG---------------SISPDEITFIGV 331
G + KLF A++ G V +I+PDE+T +
Sbjct: 287 SGLLDMAWKLFDEMPDKDVVPWNAMIGGYVHANRGKEALALFNEMQAMNINPDEVTMVSC 346
Query: 332 ICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDN 391
+ AC + L G + I+ +++ N A + ++YA +A ++ +++P N
Sbjct: 347 LSACSQLGALDVG-IWIHHYIEKHELSLNVALGTALIDMYAKCGKITKAIQVFQELPGRN 405
Query: 392 DNMSFESIMWVSLLSLCRFQG 412
S+ W +++S G
Sbjct: 406 ------SLTWTAIISGLALHG 420
Score = 40.8 bits (94), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 44/205 (21%), Positives = 89/205 (43%), Gaps = 18/205 (8%)
Query: 27 LLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPN 86
L+ A G + VF+ + + A+I + + ++ +MI N MP+
Sbjct: 381 LIDMYAKCGKITKAIQVFQELPGRNSLTWTAIISGLALHGNAHGAIAYFSEMIDNSVMPD 440
Query: 87 SYTFVSLFGSCAKTGCVERG-GMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMF 145
TF+ L +C G VE G ++ K + +L + ++++ G G ++ A +
Sbjct: 441 EVTFLGLLSACCHGGLVEEGRKYFSQMSSKFNLSPKLKHYSCMVDLLGRAGLLEEAEELI 500
Query: 146 VQMS-PRDLISWNSI-----VSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKS-- 197
M D + W ++ + G+V G+ AA +L + P + + + ++ + Y ++
Sbjct: 501 KSMPIEADAVVWGALFFACRIHGNVLMGE-RAASKLLQMDPHDSGI-YVLLANMYGEAEM 558
Query: 198 -GNPGCSLKLFREMMKSGFRGNDKT 221
G + KL R+ RG +KT
Sbjct: 559 WKEAGKARKLMRQ------RGVEKT 577
>gi|225444752|ref|XP_002278169.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Vitis vinifera]
Length = 596
Score = 292 bits (747), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 167/492 (33%), Positives = 263/492 (53%), Gaps = 21/492 (4%)
Query: 1 MKQLLQIQAHLITSGLFFN----NSFWTINLLKHSADFGSPDYTVLVFKCINNPGT-FCV 55
MKQ + LI +GL + + L S D DY +L+ + P T F
Sbjct: 1 MKQFKEAHTQLIINGLTHPPPSLRPIISFSALDPSGDI---DYALLLLLRTSTPPTVFLF 57
Query: 56 NAVIKAYSNSCVPDQ---GVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGL 112
N I+ +S + P V+ +++M PN++TF LF C+ + G HG+
Sbjct: 58 NTTIRGFSRARRPGSLLSSVLLFVRMGVLSLAPNNFTFTFLFQGCSNCVAFDLGRQFHGM 117
Query: 113 ALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAA 172
+KN + ++ V NS+I Y G ++ AR +F + S D++SWNS++ G +R+G++ A
Sbjct: 118 VIKNSFEMDVFVRNSIIRFYSVCGRLNDARWVFDESSELDVVSWNSMIDGCIRNGNILEA 177
Query: 173 HELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRS 232
LF M ERN +SWN+MISGY+++G P +L LFREM N + SVL+AC +
Sbjct: 178 LSLFSKMTERNDISWNMMISGYAQNGQPKEALALFREMQMLDQEPNSAILVSVLSACSQL 237
Query: 233 ARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMI 292
+ G VH Y + ++ + IL ALID+Y+KC +++A + F + R++ + A I
Sbjct: 238 GALDHGCWVHCYIGKKCVRVDSILSAALIDMYAKCGSIDLAMQAFSTSRKRDVSAYTAAI 297
Query: 293 LGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMI 352
G ++G EE ++LF + G ISPD +++I V+CAC A + +G YF M
Sbjct: 298 SGLAMNGCSEEALQLFEQM-----KGEGISPDGVSYIAVLCACSHAGWVEKGFHYFASMS 352
Query: 353 DFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQG 412
D + I+P HY CM +L A L EEAE+ + MP DN ++W +LL CR G
Sbjct: 353 DVHGIRPELDHYACMVDLLGRAGLLEEAEKFVASMPIKPDN-----VIWGALLGACRVYG 407
Query: 413 AVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLV 472
M +R+ V+ D RY L N+YA + + ED +VR+ M++R++ R+PGC L+
Sbjct: 408 NAEMGQRVGSLLVESDQNHDGRYILLSNIYAESMKGEDAEQVRKTMRRRKVDRVPGCSLI 467
Query: 473 DLKEVVEKLKVG 484
++ V + G
Sbjct: 468 EVAGFVHEFFSG 479
>gi|449457516|ref|XP_004146494.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g44230-like [Cucumis sativus]
Length = 650
Score = 291 bits (746), Expect = 4e-76, Method: Compositional matrix adjust.
Identities = 151/472 (31%), Positives = 265/472 (56%), Gaps = 16/472 (3%)
Query: 3 QLLQIQAHLITSGLFFNNSFWTINLLKHSADFGSP--DYTVLVFKCINNPGTFCVNAVIK 60
Q+ Q+ AH+I +GL S+ L++ P Y +LVF +N P F A+I+
Sbjct: 57 QIKQVHAHIIRNGLS-QCSYVLTKLIRMLTKVDVPMGSYPLLVFGQVNYPNPFLWTAMIR 115
Query: 61 AYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLA-LKNGVD 119
Y+ + + FY +M ++G P S+TF +LF +C ++ G H L G
Sbjct: 116 GYALQGLLSESTNFYTRMRRDGVGPVSFTFSALFKACGAALNMDLGKQVHAQTILIGGFA 175
Query: 120 FELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIM 179
+L V NS+I++Y G + CAR +F +MS RD++SW ++ + + GDM +A LFD +
Sbjct: 176 SDLYVGNSMIDLYVKCGFLGCARKVFDEMSERDVVSWTELIVAYAKYGDMESASGLFDDL 235
Query: 180 PERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGR 239
P +++V+W M++GY+++G P +L+ F++M G ++ T+A V++AC +
Sbjct: 236 PLKDMVAWTAMVTGYAQNGRPKEALEYFQKMQDVGMETDEVTLAGVISACAQLGAVKHAN 295
Query: 240 SVHGYTVRTSLKP--NIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCI 297
+ R+ P N+++ +ALID+YSKC + A +VF+ M +RN+ +++MILG+ +
Sbjct: 296 WIRDIAERSGFGPSGNVVVGSALIDMYSKCGSPDEAYKVFEVMKERNVFSYSSMILGYAM 355
Query: 298 HGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKI 357
HG+ ++LF ++ I P+++TFIG++ AC A L+ +GR+ F +M F+ +
Sbjct: 356 HGRAHSALQLFHDMLK-----TEIRPNKVTFIGILSACSHAGLVEQGRQLFAKMEKFFGV 410
Query: 358 KPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMV 417
P+ HY CM +L A EEA ++++ MP M +W +LL CR G +
Sbjct: 411 APSPDHYACMVDLLGRAGCLEEALDLVKTMP-----MEPNGGVWGALLGACRIHGNPDIA 465
Query: 418 ERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGC 469
+ A ++P Y L N+YA AG+WE+V+++R++++++ + PGC
Sbjct: 466 QIAANELFKLEPNGIGNYILLSNIYASAGRWEEVSKLRKVIREKGFKKNPGC 517
>gi|297738895|emb|CBI28140.3| unnamed protein product [Vitis vinifera]
Length = 580
Score = 291 bits (746), Expect = 4e-76, Method: Compositional matrix adjust.
Identities = 160/471 (33%), Positives = 259/471 (54%), Gaps = 17/471 (3%)
Query: 33 DFGSPDYTVLVFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVS 92
D GS Y LVF I NP TF N++I+ Y+N +P Q ++FY M+ G P+ +TF S
Sbjct: 24 DSGSLPYARLVFNQIPNPTTFTCNSIIRGYTNKNLPRQAILFYQLMMLQGLDPDRFTFPS 83
Query: 93 LFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRD 152
LF SC G + G H + K G + + N+L+NMY G + AR +F +M +
Sbjct: 84 LFKSC---GVLCEGKQLHCHSTKLGFASDAYIQNTLMNMYSNCGCLVSARKVFDKMVNKS 140
Query: 153 LISWNSIVSGHVRSGDMSAAHELFDIMP-ERNVVSWNIMISGYSKSGNPGCSLKLFREMM 211
++SW +++ + + A +LF M N+ WNIMI+G+ + + +L LF EM
Sbjct: 141 VVSWATMIGAYAQWDLPHEAIKLFRRMEIASNLFCWNIMINGHVEDSDYEEALSLFNEMQ 200
Query: 212 KSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVE 271
SG +G+ TMAS+L AC G+ +H Y + ++ ++ L TAL+D+Y+KC +E
Sbjct: 201 LSGVKGDKVTMASLLIACTHLGALELGKWLHVYIEKEKIEVDVALGTALVDMYAKCGSIE 260
Query: 272 VAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGV 331
A RVF M +++++ W A+I+G + G+ + ++LF + + PD ITF+GV
Sbjct: 261 SAMRVFQEMPEKDVMTWTALIVGLAMCGQGLKALELFHEM-----QMSEVKPDAITFVGV 315
Query: 332 ICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDN 391
+ AC A L+ EG YF M + Y I+P+ HY CM ++ A EAE++++ MP
Sbjct: 316 LAACSHAGLVNEGIAYFNSMPNKYGIQPSIEHYGCMVDMLGRAGRIAEAEDLIQNMP--- 372
Query: 392 DNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDV 451
M+ + + V LLS CR G + + ER A+ +++DP++ Y L N+Y+ WE
Sbjct: 373 --MAPDYFVLVGLLSACRIHGNLVVAERAAQQLIELDPKNGGTYVLLSNIYSSMKNWEAA 430
Query: 452 ARVRELMKKRRMGRMPGCRLVDLKEVVEKL---KVGHFWRGGMKEEVNKMM 499
++RELM +R + + PGC +++ VV + V H + E ++ MM
Sbjct: 431 KKMRELMVERNIKKPPGCSAIEVGGVVHEFVKGDVSHPQSSEIYETLDDMM 481
>gi|449449649|ref|XP_004142577.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g08510-like [Cucumis sativus]
Length = 589
Score = 291 bits (746), Expect = 4e-76, Method: Compositional matrix adjust.
Identities = 157/485 (32%), Positives = 268/485 (55%), Gaps = 17/485 (3%)
Query: 1 MKQLLQIQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIK 60
M QL QI A+ + +GL +++ + I L D Y +F I P + N I+
Sbjct: 1 MNQLKQIHAYSLRNGL--DHTKFLIEKLLQLPDL---PYACTLFDQIPKPSVYLYNKFIQ 55
Query: 61 AYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDF 120
+S+ P + + Y QM G PN Y+F LF +CA V G M H K+G
Sbjct: 56 TFSSIGHPHRCWLLYCQMCSQGCSPNQYSFTFLFPACASLFNVYPGQMLHSHFCKSGFAS 115
Query: 121 ELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMP 180
++ M +L++MY G + AR +F +M RD+ +WNS+++G+ RSG M AA ELF+ MP
Sbjct: 116 DMFAMTALLDMYAKLGMLRSARQLFDEMPVRDIPTWNSLIAGYARSGHMEAALELFNKMP 175
Query: 181 ERNVVSWNIMISGYSKSGNPGCSLKLFREMM-KSGFRGNDKTMASVLTACGRSARFNEGR 239
RNV+SW +ISGY+++G +L++F + + G + N+ ++ASVL AC + + G+
Sbjct: 176 VRNVISWTALISGYAQNGKYAKALEMFIGLENEKGTKPNEVSIASVLPACSQLGALDIGK 235
Query: 240 SVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSM-ADRNLVCWNAMILGHCIH 298
+ Y N + A+++L+++C +E AQ+VFD + + RNL WN MI+G +H
Sbjct: 236 RIEAYARNNGFFKNAYVSNAVLELHARCGNIEEAQQVFDEIGSKRNLCSWNTMIMGLAVH 295
Query: 299 GKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIK 358
G+ + ++L+ ++ + PD++TF+G++ AC ++ EGR+ F M +++
Sbjct: 296 GRCIDALQLYDQMLI-----RKMRPDDVTFVGLLLACTHGGMVAEGRQLFESMESKFQVA 350
Query: 359 PNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVE 418
P HY C+ +L A +EA +++ MP M+ +S++W +LL C F G V + E
Sbjct: 351 PKLEHYGCLVDLLGRAGELQEAYNLIQNMP-----MAPDSVIWGTLLGACSFHGNVELGE 405
Query: 419 RLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLKEVV 478
A+S ++P + Y L N+YA+AG W VAR+R++MK + + G +++ + +
Sbjct: 406 VAAESLFKLEPWNPGNYVILSNIYALAGDWSGVARLRKMMKGGHITKRAGYSYIEVGDGI 465
Query: 479 EKLKV 483
+ V
Sbjct: 466 HEFIV 470
>gi|357494311|ref|XP_003617444.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355518779|gb|AET00403.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 542
Score = 291 bits (746), Expect = 4e-76, Method: Compositional matrix adjust.
Identities = 160/483 (33%), Positives = 261/483 (54%), Gaps = 13/483 (2%)
Query: 6 QIQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSNS 65
QI H+I +GL N T L ++ G+ +Y +F + NP + N +I+A+S S
Sbjct: 46 QIYPHIIKTGLTLNPIASTRALTFCASPSGNINYAYKLFVRMPNPNLYSWNTIIRAFSRS 105
Query: 66 CVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVM 125
P + ++ M+ + P T+ S+F + A+ G G HG +K G+ + +
Sbjct: 106 STPQFAISLFVDMLYSQIQPQYLTYPSVFKAYAQLGHAHYGAQLHGRVVKLGLQNDQFIC 165
Query: 126 NSLINMYGCFGAMDCARNMF----VQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPE 181
N++I MY G M AR +F +++ D+++ NS++ G+ + G++ + LFD M
Sbjct: 166 NTIIYMYANGGLMSEARRVFDGKKLELYDHDVVAINSMIMGYAKCGEIDESRNLFDDMIT 225
Query: 182 RNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSV 241
R VSWN MISGY ++G +L+LF +M GF ++ TM S+L AC G+ V
Sbjct: 226 RTSVSWNSMISGYVRNGKLMEALELFNKMQVEGFEVSEFTMVSLLNACAHLGALQHGKWV 285
Query: 242 HGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKP 301
H Y R + N+I+ TA+ID+Y KC VE A VF++ R L CWN++I+G ++G
Sbjct: 286 HDYIKRNHFELNVIVVTAIIDMYCKCGSVENAVEVFETCPRRGLSCWNSIIIGLAMNGHE 345
Query: 302 EEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNF 361
E + F+ L + + + PD ++FIGV+ AC + + R YF M++ Y+I+P+
Sbjct: 346 REAFEFFSKLESSKL----LKPDSVSFIGVLTACKHLGAINKARDYFELMMNKYEIEPSI 401
Query: 362 AHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLA 421
HY C+ ++ A L EEAEE+++ MP D +I+W SLLS CR V + R A
Sbjct: 402 KHYTCIVDVLGQAGLLEEAEELIKGMPLKPD-----AIIWGSLLSSCRKHRNVQIARRAA 456
Query: 422 KSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLKEVVEKL 481
+ +++P D S Y + NV+A + ++E+ R LMK+ + PGC ++L V +
Sbjct: 457 QRVYELNPSDASGYVLMSNVHAASNKFEEAIEQRLLMKENLTEKEPGCSSIELYGEVHEF 516
Query: 482 KVG 484
G
Sbjct: 517 IAG 519
>gi|294463969|gb|ADE77505.1| unknown [Picea sitchensis]
Length = 514
Score = 290 bits (742), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 147/416 (35%), Positives = 236/416 (56%), Gaps = 10/416 (2%)
Query: 78 MIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGA 137
M+ G PN +T ++ +CA +E+G H +K G + ++ V +L++MY G+
Sbjct: 1 MVGKGVKPNQFTLSTVVKACASIASLEQGKQAHNYIIKMGFESDVVVQTALVHMYARCGS 60
Query: 138 MDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKS 197
++ A ++F +MS R +WN++++GH ++ DM A +LF M ER+VVSW +I+GY+++
Sbjct: 61 LEDAGHVFDKMSERSTRTWNAMITGHAQNRDMKKALKLFYEMSERDVVSWTAVIAGYAQN 120
Query: 198 GNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILD 257
G SL +F +M K+G + + M SVL+AC A GR H Y V++ +I++
Sbjct: 121 GYGDESLNVFNQMRKTGMKSDRFIMGSVLSACADLAALELGRQFHAYVVQSGFALDIVVG 180
Query: 258 TALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVA 317
+AL+D+Y+K +E A +VFD M RN V WN++I G HG+ + + LF ++
Sbjct: 181 SALVDMYAKSGSMEDACQVFDKMPQRNEVSWNSIITGCAQHGRGNDAVLLFEQMLQ---- 236
Query: 318 GGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELT 377
I P+EI+F+GV+ AC L+ EGR YF M Y I P+ +HY CM +L A
Sbjct: 237 -AGIKPNEISFVGVLSACSHTGLVNEGRGYFNLMTQNYGIVPDVSHYTCMIDLLGRAGCL 295
Query: 378 EEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQF 437
+EAE + MP + D +W +LL CR G + +R+A+ + M+ Q Y
Sbjct: 296 DEAENFINGMPVEPD-----VSVWGALLGACRIHGNTELAKRIAEHLLGMEVQIAGIYVL 350
Query: 438 LLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLKEVVEKLKVGHFWRGGMKE 493
L N+YA AGQW+D A+VR+LMK R + + PG +++K ++ G +KE
Sbjct: 351 LSNIYAAAGQWDDAAKVRKLMKDRGVMKQPGYSWIEVKTIMHAFVAGETSHPQLKE 406
Score = 93.2 bits (230), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 67/253 (26%), Positives = 119/253 (47%), Gaps = 41/253 (16%)
Query: 56 NAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALK 115
AVI Y+ + D+ + + QM K G + + S+ +CA +E G H ++
Sbjct: 111 TAVIAGYAQNGYGDESLNVFNQMRKTGMKSDRFIMGSVLSACADLAALELGRQFHAYVVQ 170
Query: 116 NGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHEL 175
+G ++ V ++L++MY G+M+ A +F +M R+ +SWNSI++G + G
Sbjct: 171 SGFALDIVVGSALVDMYAKSGSMEDACQVFDKMPQRNEVSWNSIITGCAQHG-------- 222
Query: 176 FDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARF 235
GN ++ LF +M+++G + N+ + VL+AC +
Sbjct: 223 ---------------------RGND--AVLLFEQMLQAGIKPNEISFVGVLSACSHTGLV 259
Query: 236 NEGRSVHGY----TVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSM-ADRNLVCWNA 290
NEGR GY T + P++ T +IDL + ++ A+ + M + ++ W A
Sbjct: 260 NEGR---GYFNLMTQNYGIVPDVSHYTCMIDLLGRAGCLDEAENFINGMPVEPDVSVWGA 316
Query: 291 MILGHC-IHGKPE 302
+ LG C IHG E
Sbjct: 317 L-LGACRIHGNTE 328
Score = 47.0 bits (110), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 38/158 (24%), Positives = 71/158 (44%), Gaps = 5/158 (3%)
Query: 6 QIQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSNS 65
Q A+++ SG + + L+ A GS + VF + N++I +
Sbjct: 163 QFHAYVVQSGFALDIVVGSA-LVDMYAKSGSMEDACQVFDKMPQRNEVSWNSIITGCAQH 221
Query: 66 CVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKN-GVDFELPV 124
+ V+ + QM++ G PN +FV + +C+ TG V G L +N G+ ++
Sbjct: 222 GRGNDAVLLFEQMLQAGIKPNEISFVGVLSACSHTGLVNEGRGYFNLMTQNYGIVPDVSH 281
Query: 125 MNSLINMYGCFGAMDCARNMFVQMSP--RDLISWNSIV 160
+I++ G G +D A N F+ P D+ W +++
Sbjct: 282 YTCMIDLLGRAGCLDEAEN-FINGMPVEPDVSVWGALL 318
>gi|296085005|emb|CBI28420.3| unnamed protein product [Vitis vinifera]
Length = 631
Score = 290 bits (741), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 170/515 (33%), Positives = 277/515 (53%), Gaps = 25/515 (4%)
Query: 2 KQLLQIQAHLITSGLFFNNSFWTINLLKHSADFGSPD--YTVLVFKCINNPGTFCVNAVI 59
+++ Q+ A + + +F N+ F + LL +D D Y +F I N +I
Sbjct: 30 QEVEQLHAFSLKTAIF-NHPFVSSRLLALYSDPKINDLGYARSIFDRIQRRSLIHWNTII 88
Query: 60 KAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVD 119
K Y + G+V + +++ ++P+++T + CA+ G V+ G HGLALK G
Sbjct: 89 KCYVENQFSHDGIVLFHELVHE-YLPDNFTLPCVIKGCARLGVVQEGKQIHGLALKIGFG 147
Query: 120 FELPVMNSLINMYGCFGAMDCARNMFVQMSPRD-----------LISWNSIVSGHVRSGD 168
++ V SL+NMY G +DCAR +F M +D L+SWN++++G+++SGD
Sbjct: 148 SDVFVQGSLVNMYSKCGEIDCARKVFDGMIDKDVVLWNSLIDGNLVSWNAMINGYMKSGD 207
Query: 169 MSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTA 228
+A ELF MP ++V+WN+MI+GY +G ++K+F M+K G R + T+ SVL+A
Sbjct: 208 FDSALELFYQMPIWDLVTWNLMIAGYELNGQFMDAVKMFFMMLKLGSRPSHATLVSVLSA 267
Query: 229 CGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCW 288
A +GR +H Y + + + IL T+LI++Y+KC +E A VF ++ + + W
Sbjct: 268 VSGLAVLGKGRWIHSYMEKNGFELDGILGTSLIEMYAKCGCIESALTVFRAIQKKKVGHW 327
Query: 289 NAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYF 348
A+I+G IHG + LF + + P+ I FIGV+ AC A L+ +GR+YF
Sbjct: 328 TAIIVGLGIHGMANHALALFLEMCK-----TGLKPNAIIFIGVLNACNHAGLVDDGRQYF 382
Query: 349 RQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLC 408
M++ YKI+P HY C+ ++ A EEA+ + MP +S ++W+SLL
Sbjct: 383 DMMMNEYKIEPTLEHYGCLVDILCRAGHLEEAKNTIENMP-----ISPNKVIWMSLLGGS 437
Query: 409 RFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPG 468
R G + + E A+ +++ P+ Y L N+YA +G WE V+ VRE+M KR + PG
Sbjct: 438 RNHGKIDIGEYAAQRVIEVAPETIGCYILLSNMYAASGMWEKVSHVREMMYKRGFRKDPG 497
Query: 469 CRLVDLKEVVEKLKVGHFWRGGMKEEVNKMMECRQ 503
C V+ K + + VG KE KM E ++
Sbjct: 498 CSSVEHKGTLHEFIVGDISHPQTKEIYAKMSEMKE 532
>gi|356559933|ref|XP_003548250.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g08510-like [Glycine max]
Length = 512
Score = 290 bits (741), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 160/476 (33%), Positives = 258/476 (54%), Gaps = 18/476 (3%)
Query: 1 MKQLLQIQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIK 60
M+Q+ QI + + +G+ T L++ + + Y V P F N +I+
Sbjct: 1 MRQVKQIHGYTLRNGID-----QTKILIEKLLEIPNLHYAHKVLHHSPKPTLFLYNKLIQ 55
Query: 61 AYSNSCV-PDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVD 119
AYS+ Q Y QM+ + F+PN +TF LF +C G M H +K+G +
Sbjct: 56 AYSSHPQHQHQCFSLYSQMLLHSFLPNQHTFNFLFSACTSLSSPSLGQMLHTHFIKSGFE 115
Query: 120 FELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIM 179
+L +L++MY G ++ AR +F QM R + +WN++++GH R GDM A ELF +M
Sbjct: 116 PDLFAATALLDMYTKVGTLELARKLFDQMPVRGVPTWNAMMAGHARFGDMDVALELFRLM 175
Query: 180 PERNVVSWNIMISGYSKSGNPGCSLKLFREM-MKSGFRGNDKTMASVLTACGRSARFNEG 238
P RNVVSW MISGYS+S G +L LF M + G N T+AS+ A G
Sbjct: 176 PSRNVVSWTTMISGYSRSKKYGEALGLFLRMEQEKGMMPNAVTLASIFPAFANLGALEIG 235
Query: 239 RSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMAD-RNLVCWNAMILGHCI 297
+ V Y + N+ + A++++Y+KC K++VA +VF+ + RNL WN+MI+G +
Sbjct: 236 QRVEAYARKNGFFKNLYVSNAVLEMYAKCGKIDVAWKVFNEIGSLRNLCSWNSMIMGLAV 295
Query: 298 HGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKI 357
HG+ + +KL+ ++ G SPD++TF+G++ AC ++ +GR F+ M + I
Sbjct: 296 HGECCKTLKLYDQML-----GEGTSPDDVTFVGLLLACTHGGMVEKGRHIFKSMTTSFNI 350
Query: 358 KPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMV 417
P HY CM +L A EA E++++MP M +S++W +LL C F V +
Sbjct: 351 IPKLEHYGCMVDLLGRAGQLREAYEVIQRMP-----MKPDSVIWGALLGACSFHDNVELA 405
Query: 418 ERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVD 473
E A+S ++P + Y L N+YA AGQW+ VA++R++MK ++ + G ++
Sbjct: 406 EIAAESLFALEPWNPGNYVILSNIYASAGQWDGVAKLRKVMKGSKITKSAGHSFIE 461
>gi|356518302|ref|XP_003527818.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g20540-like [Glycine max]
Length = 535
Score = 289 bits (740), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 153/485 (31%), Positives = 260/485 (53%), Gaps = 12/485 (2%)
Query: 1 MKQLLQIQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIK 60
+ +L +I AH++ L +N F +L + DY ++F+ + NP F NA+I+
Sbjct: 20 IAELKKIHAHIVKLSLSQSN-FLVTKMLDLCDNLSHVDYATMIFQQLENPNVFSYNAIIR 78
Query: 61 AYSNSCVPDQGVVFYLQMIKN-GFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVD 119
Y+++ + + QM+ P+ +TF + SCA C G H K G
Sbjct: 79 TYTHNHKHPLAITVFNQMLTTKSASPDKFTFPFVIKSCAGLLCRRLGQQVHAHVCKFGPK 138
Query: 120 FELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIM 179
N+LI+MY G M A ++ +M+ RD +SWNS++SGHVR G M +A E+FD M
Sbjct: 139 THAITENALIDMYTKCGDMSGAYQVYEEMTERDAVSWNSLISGHVRLGQMKSAREVFDEM 198
Query: 180 PERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGR 239
P R +VSW MI+GY++ G +L +FREM G ++ ++ SVL AC + G+
Sbjct: 199 PCRTIVSWTTMINGYARGGCYADALGIFREMQVVGIEPDEISVISVLPACAQLGALEVGK 258
Query: 240 SVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHG 299
+H Y+ ++ N + AL+++Y+KC ++ A +F+ M +++++ W+ MI G HG
Sbjct: 259 WIHKYSEKSGFLKNAGVFNALVEMYAKCGCIDEAWGLFNQMIEKDVISWSTMIGGLANHG 318
Query: 300 KPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKP 359
K I++F + ++P+ +TF+GV+ AC A L EG +YF M Y ++P
Sbjct: 319 KGYAAIRVFEDM-----QKAGVTPNGVTFVGVLSACAHAGLWNEGLRYFDVMRVDYHLEP 373
Query: 360 NFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVER 419
HY C+ +L + E+A + + KMP M +S W SLLS CR + +
Sbjct: 374 QIEHYGCLVDLLGRSGQVEQALDTILKMP-----MQPDSRTWNSLLSSCRIHHNLEIAVV 428
Query: 420 LAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLKEVVE 479
+ + ++P++ Y L N+YA +WE V+ VR+L++ +R+ + PGC L+++ +V+
Sbjct: 429 AMEQLLKLEPEESGNYVLLANIYAKLDKWEGVSNVRKLIRSKRIKKTPGCSLIEVNNLVQ 488
Query: 480 KLKVG 484
+ G
Sbjct: 489 EFVSG 493
Score = 49.7 bits (117), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 55/243 (22%), Positives = 102/243 (41%), Gaps = 29/243 (11%)
Query: 214 GFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVA 273
G R + + L C + A E + +H + V+ SL + L T ++DL V+ A
Sbjct: 2 GVRELENRFVTTLRNCPKIA---ELKKIHAHIVKLSLSQSNFLVTKMLDLCDNLSHVDYA 58
Query: 274 QRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVIC 333
+F + + N+ +NA+I + + K I +F N + S SPD+ TF VI
Sbjct: 59 TMIFQQLENPNVFSYNAIIRTYTHNHKHPLAITVF----NQMLTTKSASPDKFTFPFVIK 114
Query: 334 ACVRAELLTEGRKYFRQMIDF----YKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPE 389
+C G++ + F + I N + ++Y A ++ +M E
Sbjct: 115 SCAGLLCRRLGQQVHAHVCKFGPKTHAITEN-----ALIDMYTKCGDMSGAYQVYEEMTE 169
Query: 390 DNDNMSFESIMWVSLLSLCRFQGAVAM--VERLAKSFVDMDPQDFSRYQFLLNVYAVAGQ 447
+++ W SL+S G V + ++ + F +M + + ++N YA G
Sbjct: 170 R------DAVSWNSLIS-----GHVRLGQMKSAREVFDEMPCRTIVSWTTMINGYARGGC 218
Query: 448 WED 450
+ D
Sbjct: 219 YAD 221
>gi|225427280|ref|XP_002278897.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g29230-like [Vitis vinifera]
Length = 719
Score = 289 bits (739), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 175/540 (32%), Positives = 273/540 (50%), Gaps = 77/540 (14%)
Query: 2 KQLLQIQAHLITSGLFFNNSFWTINLLKHSADF-GSPDYTVLVFKCINNPGTFCVNAVIK 60
K+ QI LI SGL +K F S + V +F+ + P F N +++
Sbjct: 73 KEFNQIHTQLIVSGLL-QQPLAAGRAVKTLCSFPDSVQHAVSLFEGLEEPDAFICNTIMR 131
Query: 61 AYSNSCVPDQGVVFYL-QMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVD 119
Y N P + FY QM++ PN YTF L C + G + G H LK G +
Sbjct: 132 TYVNVNDPYTALGFYYEQMVRKCVAPNHYTFPLLVKVCWEIGSIGDGEKIHARILKFGFE 191
Query: 120 FELPVMNSLINMYGCFG-------------------------------AMDCARNMFVQM 148
+L V NSLI+MY G + AR +F +M
Sbjct: 192 LDLFVRNSLIHMYSVCGRIGDARAMFEVCSISDLVTWNSMIDGYVKNGEIGAARELFEEM 251
Query: 149 SPRDLISWNSIVSGHVRSGDMSAAH-------------------------------ELFD 177
RDL SWNS+++G+V +GDM+AA ELF+
Sbjct: 252 PERDLFSWNSMIAGYVGNGDMTAAEDLFNKMPFRDIVSWNCMIDGYAQVQNMEIACELFN 311
Query: 178 IMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNE 237
MP RNVVSWNIM++ Y + + L++F +MM N+ T+ SVLTAC R +
Sbjct: 312 WMPYRNVVSWNIMLALYVRIKDYDECLRMFDKMMGETM-PNEATLVSVLTACAHLGRLDR 370
Query: 238 GRSVHGYTVRTS-LKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHC 296
G+ +H Y ++P+++L TAL+ +Y+KC +++A+ VFD M++R++V WN+MI+G+
Sbjct: 371 GKWIHSYIKNNRVIEPDVLLSTALLTMYAKCGAMDLARDVFDKMSNRSVVSWNSMIMGYG 430
Query: 297 IHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYK 356
+HG+ ++ +++F + P++ TFI V+ AC + ++ EG YF M YK
Sbjct: 431 MHGQADKALEMFLDM-----EKRGPMPNDATFICVLSACAHSGMILEGWWYFDLMRRAYK 485
Query: 357 IKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAM 416
I+P HY CM +L A L ++ EE++RKMP M + +W +LLS CR +
Sbjct: 486 IEPKVEHYGCMVDLLGRAGLMKDLEELIRKMP-----MEGGTALWGALLSACRTHSNSEL 540
Query: 417 VERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLKE 476
E +AK ++++P+D Y L N+YA G+W+DV VR++MK+R + + G V ++E
Sbjct: 541 AEIVAKRLIELEPRDIGPYLLLSNIYAAEGKWDDVEIVRKMMKERGLTKTTGFSWVHIEE 600
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 61/303 (20%), Positives = 118/303 (38%), Gaps = 46/303 (15%)
Query: 110 HGLALKNGVDFELPVMN----SLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVR 165
HG L D LP++ L + C G+ + Q+ L+ V+
Sbjct: 40 HGHGLPEEDDQPLPILKLSHPILRTLESCCGSTKEFNQIHTQLIVSGLLQQPLAAGRAVK 99
Query: 166 S-----GDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFRE-MMKSGFRGND 219
+ + A LF+ + E + N ++ Y +P +L + E M++ N
Sbjct: 100 TLCSFPDSVQHAVSLFEGLEEPDAFICNTIMRTYVNVNDPYTALGFYYEQMVRKCVAPNH 159
Query: 220 KTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDS 279
T ++ C +G +H ++ + ++ + +LI +YS C ++ A+ +F+
Sbjct: 160 YTFPLLVKVCWEIGSIGDGEKIHARILKFGFELDLFVRNSLIHMYSVCGRIGDARAMFEV 219
Query: 280 MADRNLVCWNAMILGHCIHGK-----------PEEGIKLFTALVNGTVAGGSISPDEITF 328
+ +LV WN+MI G+ +G+ PE + + +++ G V G ++ E F
Sbjct: 220 CSISDLVTWNSMIDGYVKNGEIGAARELFEEMPERDLFSWNSMIAGYVGNGDMTAAEDLF 279
Query: 329 IGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMP 388
+ FR ++ + CM + YA + E A E+ MP
Sbjct: 280 ---------------NKMPFRDIVSWN----------CMIDGYAQVQNMEIACELFNWMP 314
Query: 389 EDN 391
N
Sbjct: 315 YRN 317
>gi|359479914|ref|XP_002268148.2| PREDICTED: uncharacterized protein LOC100250295 [Vitis vinifera]
Length = 1130
Score = 288 bits (738), Expect = 4e-75, Method: Compositional matrix adjust.
Identities = 158/442 (35%), Positives = 248/442 (56%), Gaps = 19/442 (4%)
Query: 52 TFCVNAVIKAYSNSCVPDQG-----VVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERG 106
+F N +I+A+ + G + +++M +G P+ +TF L S A + G
Sbjct: 24 SFLWNTLIRAHVQARAQPTGPTHSPISIFVRMRFHGVQPDFHTFPFLLQSFASPSLLHLG 83
Query: 107 GMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRS 166
H L+ G+ + V SLI+MY G + AR +F ++ DL SWNSI++ + ++
Sbjct: 84 RSVHAQILRFGLAIDPFVQTSLISMYSSCGNLGFARQVFDEIPQPDLPSWNSIINANFQA 143
Query: 167 GDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSG---FRGNDKTMA 223
G + A LF +MPERNV+SW+ MI+GY + G +L LFREM G R N+ TM+
Sbjct: 144 GLVDMARNLFAVMPERNVISWSCMINGYVRCGQYKEALALFREMQMLGVNDVRPNEFTMS 203
Query: 224 SVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMA-D 282
VL ACGR G+ H Y + + +++L TALID+Y+KC VE A VF ++ +
Sbjct: 204 GVLAACGRLGALEHGKWAHAYIDKCGMPVDVVLGTALIDMYAKCGSVEKATWVFSNLGPN 263
Query: 283 RNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLT 342
++++ W+AMI G +HG EE + LF+ ++N V P+ +TF+ V CACV L++
Sbjct: 264 KDVMAWSAMISGLAMHGLAEECVGLFSKMINQGV-----RPNAVTFLAVFCACVHGGLVS 318
Query: 343 EGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWV 402
EG+ Y R+M + Y I P HY CM +LY A +EA +++ MP + D ++W
Sbjct: 319 EGKDYLRRMTEDYSIIPTIQHYGCMVDLYGRAGRIKEAWNVVKSMPMEPD-----VLVWG 373
Query: 403 SLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRR 462
+LLS R G + E K ++++P + Y L NVYA G+WEDV VR+LM+
Sbjct: 374 ALLSGSRMHGDIETCELALKKLIELEPTNSGAYVLLSNVYAKRGRWEDVRHVRDLMETMG 433
Query: 463 MGRMPGCRLVDLKEVVEKLKVG 484
+ ++PGC L+++ V+ + VG
Sbjct: 434 IKKVPGCSLIEVGGVLHEFFVG 455
Score = 47.0 bits (110), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 52/224 (23%), Positives = 97/224 (43%), Gaps = 35/224 (15%)
Query: 27 LLKHSADFGSPDYTVLVFKCIN-NPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMP 85
L+ A GS + VF + N +A+I + + ++ V + +MI G P
Sbjct: 240 LIDMYAKCGSVEKATWVFSNLGPNKDVMAWSAMISGLAMHGLAEECVGLFSKMINQGVRP 299
Query: 86 NSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFE-LPVMNS---LINMYGCFGAMDCA 141
N+ TF+++F +C G V G + D+ +P + ++++YG G + A
Sbjct: 300 NAVTFLAVFCACVHGGLVSEG---KDYLRRMTEDYSIIPTIQHYGCMVDLYGRAGRIKEA 356
Query: 142 RNMF--VQMSPRDLISWNSIVSGHVRSGDMS----AAHELFDIMPERNVVSWNIMISGYS 195
N+ + M P D++ W +++SG GD+ A +L ++ P N ++ ++ + Y+
Sbjct: 357 WNVVKSMPMEP-DVLVWGALLSGSRMHGDIETCELALKKLIELEPT-NSGAYVLLSNVYA 414
Query: 196 KSGN-------------------PGCSLKLFREMMKSGFRGNDK 220
K G PGCSL ++ F G+D
Sbjct: 415 KRGRWEDVRHVRDLMETMGIKKVPGCSLIEVGGVLHEFFVGDDS 458
>gi|225470997|ref|XP_002266598.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic [Vitis vinifera]
gi|297742795|emb|CBI35475.3| unnamed protein product [Vitis vinifera]
Length = 517
Score = 288 bits (737), Expect = 4e-75, Method: Compositional matrix adjust.
Identities = 157/483 (32%), Positives = 252/483 (52%), Gaps = 12/483 (2%)
Query: 1 MKQLLQIQAHLITSGLFFNN-SFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVI 59
+++L QI +T GL + LL GSP VF I NP +I
Sbjct: 16 LEKLKQIHGKAVTLGLLCSKRQHLACKLLNTYTQLGSPVDAQKVFNHIQNPDIVSWTCLI 75
Query: 60 KAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVD 119
Y ++ P + + + +G P+S+ V +C + G + HG+ + +
Sbjct: 76 SLYLHTSQPCKAFSIFSHLFHSGLRPDSFCVVGAVSACGHRKDLSNGRIVHGMVFRFELG 135
Query: 120 FELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIM 179
+ V N+LI+MY GA++ A ++F M +D+ SW S+++G ++ D+ AA +FD M
Sbjct: 136 SDPIVGNALIDMYSRSGAIEVACSVFKTMEIKDVSSWTSLLNGFIKCNDIEAARRIFDEM 195
Query: 180 PERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFR-GNDKTMASVLTACGRSARFNEG 238
P RN VSW MI+GY + P L+LF+EM G T+ +VL+ C F+ G
Sbjct: 196 PMRNSVSWTAMITGYVQGEVPIPGLELFQEMRAEGKDWPTVITIVAVLSGCADIGAFDLG 255
Query: 239 RSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIH 298
SVHGY +T+L ++ ++ AL+D+Y+K + +A ++F M R++ W MI G +H
Sbjct: 256 SSVHGYVNKTNLDLDVTVNNALMDMYAKSGALVLALKIFQEMPKRDVFSWTTMISGLALH 315
Query: 299 GKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIK 358
GK ++ F+ + V P+E+T + V+ AC A L+ EGR F++M+ + IK
Sbjct: 316 GKGTHALEAFSDMSKSGVV-----PNEVTLLSVLSACSHAGLVVEGRSLFQKMVQCHGIK 370
Query: 359 PNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVE 418
P HY CM +L A L EA+E++ MP D S++W SLLS C G +A+ E
Sbjct: 371 PKIQHYGCMVDLLGRAGLLREAKELIEHMPIKPD-----SVIWRSLLSACLVHGNLALAE 425
Query: 419 RLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLKEVV 478
K ++++P D Y L N+Y A +WED + R+ M+ RR+ + PGC V++ VV
Sbjct: 426 MAGKMIIELEPDDDGVYILLWNIYCSASRWEDALKARKAMRDRRVKKKPGCSWVEVNGVV 485
Query: 479 EKL 481
+
Sbjct: 486 HEF 488
>gi|356536721|ref|XP_003536884.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g62890-like [Glycine max]
Length = 1116
Score = 288 bits (736), Expect = 6e-75, Method: Compositional matrix adjust.
Identities = 158/444 (35%), Positives = 252/444 (56%), Gaps = 21/444 (4%)
Query: 49 NPGTFCVNAVIKAYSNSCVPDQG----VVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVE 104
N +F N +I+A + S V + + YL+M + +P+ +TF L S
Sbjct: 21 NIESFVWNNLIRASTRSRVQNPAFPPALSLYLRMRLHAVLPDLHTFPFLLQS---INTPH 77
Query: 105 RGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHV 164
RG H L G+ + V SLINMY G AR F +++ DL SWN+I+ +
Sbjct: 78 RGRQLHAQILLLGLANDPFVQTSLINMYSSCGTPTFARQAFDEITQPDLPSWNAIIHANA 137
Query: 165 RSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMK---SGFRGNDKT 221
++G + A +LFD MPE+NV+SW+ MI GY G +L LFR + S R N+ T
Sbjct: 138 KAGMIHIARKLFDQMPEKNVISWSCMIHGYVSCGEYKAALSLFRSLQTLEGSQLRPNEFT 197
Query: 222 MASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMA 281
M+SVL+AC R G+ VH Y +T +K +++L T+LID+Y+KC +E A+ +FD++
Sbjct: 198 MSSVLSACARLGALQHGKWVHAYIDKTGMKIDVVLGTSLIDMYAKCGSIERAKCIFDNLG 257
Query: 282 -DRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAEL 340
+++++ W+AMI +HG EE ++LF +VN + P+ +TF+ V+CACV L
Sbjct: 258 PEKDVMAWSAMITAFSMHGLSEECLELFARMVN-----DGVRPNAVTFVAVLCACVHGGL 312
Query: 341 LTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIM 400
++EG +YF++M++ Y + P HY CM +LY+ A E+A +++ MP + D M +
Sbjct: 313 VSEGNEYFKRMMNEYGVSPMIQHYGCMVDLYSRAGRIEDAWNVVKSMPMEPDVM-----I 367
Query: 401 WVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKK 460
W +LL+ R G V E +++DP + S Y L NVYA G+W +V +R+LM+
Sbjct: 368 WGALLNGARIHGDVETCEIAITKLLELDPANSSAYVLLSNVYAKLGRWREVRHLRDLMEV 427
Query: 461 RRMGRMPGCRLVDLKEVVEKLKVG 484
R + ++PGC LV++ V+ + G
Sbjct: 428 RGIKKLPGCSLVEVDGVIREFFAG 451
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 83/338 (24%), Positives = 144/338 (42%), Gaps = 77/338 (22%)
Query: 6 QIQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSNS 65
Q+ A ++ GL N+ F +L+ + G+P + F I P NA+I A + +
Sbjct: 81 QLHAQILLLGLA-NDPFVQTSLINMYSSCGTPTFARQAFDEITQPDLPSWNAIIHANAKA 139
Query: 66 C-----------VPDQGVVFYLQMIKNGFM------------------------PNSYTF 90
+P++ V+ + MI +G++ PN +T
Sbjct: 140 GMIHIARKLFDQMPEKNVISWSCMI-HGYVSCGEYKAALSLFRSLQTLEGSQLRPNEFTM 198
Query: 91 VSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSP 150
S+ +CA+ G ++ G H K G+ ++ + SLI+MY G+++ A+ +F + P
Sbjct: 199 SSVLSACARLGALQHGKWVHAYIDKTGMKIDVVLGTSLIDMYAKCGSIERAKCIFDNLGP 258
Query: 151 RDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREM 210
E++V++W+ MI+ +S G L+LF M
Sbjct: 259 ------------------------------EKDVMAWSAMITAFSMHGLSEECLELFARM 288
Query: 211 MKSGFRGNDKTMASVLTACGRSARFNEG-----RSVHGYTVRTSLKPNIILDTALIDLYS 265
+ G R N T +VL AC +EG R ++ Y V P I ++DLYS
Sbjct: 289 VNDGVRPNAVTFVAVLCACVHGGLVSEGNEYFKRMMNEYGV----SPMIQHYGCMVDLYS 344
Query: 266 KCQKVEVAQRVFDSMA-DRNLVCWNAMILGHCIHGKPE 302
+ ++E A V SM + +++ W A++ G IHG E
Sbjct: 345 RAGRIEDAWNVVKSMPMEPDVMIWGALLNGARIHGDVE 382
>gi|224124674|ref|XP_002330082.1| predicted protein [Populus trichocarpa]
gi|222871507|gb|EEF08638.1| predicted protein [Populus trichocarpa]
Length = 665
Score = 288 bits (736), Expect = 6e-75, Method: Compositional matrix adjust.
Identities = 165/517 (31%), Positives = 268/517 (51%), Gaps = 44/517 (8%)
Query: 1 MKQLLQIQAHLITSGLFFNNSFWTINLLKHSAD--FGSPDYTVLVFKCINNPGTFCVNAV 58
+ L Q+ A + +G F + + + L+K A+ F + ++ + VF+ + NP F N +
Sbjct: 43 LHHLKQVHAVALRTG-HFQDHYVSGTLVKCYANPHFSNLNFALKVFEYVPNPNVFVFNII 101
Query: 59 IKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGV 118
IK + P + + Y +M+ PN +T+ +LF +C E G H +K G+
Sbjct: 102 IKGCLQNNEPCKAICCYYKMMIAHARPNKFTYPTLFKACTAAEAAEEGVQVHAHVIKQGL 161
Query: 119 DFELPVMNSLINMYGCFGAMDCARNM-------------------------------FVQ 147
++ + ++ I MYG FG ++ AR M F
Sbjct: 162 SGDVHIRSAGIQMYGSFGEVEGARRMLGEDGNSDVICFNAMIDGYLKCGEVEAAKELFWS 221
Query: 148 MSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLF 207
M +++ SWN +VSG + G + A ELF+ M E+N +SW+ MI GY K G +L++F
Sbjct: 222 MEDKNVGSWNVMVSGMAKCGMIEEARELFNEMKEKNEISWSAMIDGYIKGGYYKEALEVF 281
Query: 208 REMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKC 267
M + R ++SVL AC ++GR +H Y S + +L TAL+D+Y+KC
Sbjct: 282 NVMQREEIRPRKFVLSSVLAACANLGALDQGRWIHAYVNNNSNSFDAVLGTALVDMYAKC 341
Query: 268 QKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEIT 327
++++A VF+ M + + WNAMI G +HG+ E+ I+LF + P+ IT
Sbjct: 342 GRLDMAWDVFEKMEKKEVFTWNAMICGLGMHGRAEDAIELFFKMQK-----QKFRPNGIT 396
Query: 328 FIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKM 387
+GV+ AC + ++ EG + F M + Y I+P HY C+ +L A L EAEE++ M
Sbjct: 397 LLGVLSACAHSGMVDEGLRIFNSMEEVYGIEPGMEHYGCVVDLLGRAGLLGEAEEVMYSM 456
Query: 388 PEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQ 447
P M + +W +LL CR G V + ER+ K ++++PQ+ RY L N+YA AG+
Sbjct: 457 P-----MEPSAAVWGALLGACRKHGDVELGERVGKILLELEPQNSGRYALLSNIYARAGR 511
Query: 448 WEDVARVRELMKKRRMGRMPGCRLVDLKEVVEKLKVG 484
W+DVA VR+LMK+R + G ++D VV + K+G
Sbjct: 512 WDDVANVRKLMKERGVKTSTGISMIDFDGVVHEFKMG 548
>gi|15225375|ref|NP_179644.1| mitochondrial editing factor 21 [Arabidopsis thaliana]
gi|75337271|sp|Q9SIL5.1|PP165_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g20540
gi|4586036|gb|AAD25654.1| unknown protein [Arabidopsis thaliana]
gi|67633530|gb|AAY78689.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|330251931|gb|AEC07025.1| mitochondrial editing factor 21 [Arabidopsis thaliana]
Length = 534
Score = 288 bits (736), Expect = 6e-75, Method: Compositional matrix adjust.
Identities = 159/487 (32%), Positives = 257/487 (52%), Gaps = 16/487 (3%)
Query: 6 QIQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSNS 65
+I A +I GL +SF ++ DY +F ++NP F N++I+AY+++
Sbjct: 28 KINASIIIHGLS-QSSFMVTKMVDFCDKIEDMDYATRLFNQVSNPNVFLYNSIIRAYTHN 86
Query: 66 CVPDQGVVFYLQMIKNGF-MPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPV 124
+ + Y Q+++ F +P+ +TF +F SCA G G HG K G F +
Sbjct: 87 SLYCDVIRIYKQLLRKSFELPDRFTFPFMFKSCASLGSCYLGKQVHGHLCKFGPRFHVVT 146
Query: 125 MNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNV 184
N+LI+MY F + A +F +M RD+ISWNS++SG+ R G M A LF +M ++ +
Sbjct: 147 ENALIDMYMKFDDLVDAHKVFDEMYERDVISWNSLLSGYARLGQMKKAKGLFHLMLDKTI 206
Query: 185 VSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGY 244
VSW MISGY+ G ++ FREM +G ++ ++ SVL +C + G+ +H Y
Sbjct: 207 VSWTAMISGYTGIGCYVEAMDFFREMQLAGIEPDEISLISVLPSCAQLGSLELGKWIHLY 266
Query: 245 TVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEG 304
R + ALI++YSKC + A ++F M ++++ W+ MI G+ HG
Sbjct: 267 AERRGFLKQTGVCNALIEMYSKCGVISQAIQLFGQMEGKDVISWSTMISGYAYHGNAHGA 326
Query: 305 IKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHY 364
I+ F + V P+ ITF+G++ AC + EG +YF M Y+I+P HY
Sbjct: 327 IETFNEMQRAKV-----KPNGITFLGLLSACSHVGMWQEGLRYFDMMRQDYQIEPKIEHY 381
Query: 365 WCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSF 424
C+ ++ A A E A EI + MP M +S +W SLLS CR G + +
Sbjct: 382 GCLIDVLARAGKLERAVEITKTMP-----MKPDSKIWGSLLSSCRTPGNLDVALVAMDHL 436
Query: 425 VDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLKEVVEKLKVG 484
V+++P+D Y L N+YA G+WEDV+R+R++++ M + PG L+++ +V++ G
Sbjct: 437 VELEPEDMGNYVLLANIYADLGKWEDVSRLRKMIRNENMKKTPGGSLIEVNNIVQEFVSG 496
Query: 485 H----FW 487
FW
Sbjct: 497 DNSKPFW 503
>gi|224131508|ref|XP_002328557.1| predicted protein [Populus trichocarpa]
gi|222838272|gb|EEE76637.1| predicted protein [Populus trichocarpa]
Length = 643
Score = 287 bits (734), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 166/514 (32%), Positives = 273/514 (53%), Gaps = 46/514 (8%)
Query: 6 QIQAHLITSGLFFNNSFWTINLLKHSADF--GSPDYTVLVFKCINNPGTFCVNAVIKAYS 63
QI A+++ GL ++ F LL H A S DY +F+ NP F N +I+
Sbjct: 23 QIHANVLKLGLE-SDPFIAGKLLHHCAISLSDSLDYACRLFRYTPNPDVFMHNTLIRGLY 81
Query: 64 NSCVPDQGVVFYLQMIKNGFMP-NSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFEL 122
S P ++ +++M +N F P +S++F + + A V G H AL +G+D L
Sbjct: 82 ESDRPQDSLLKFIEMRRNSFSPPDSFSFAFIVKAAANLRSVRVGIQLHCQALVHGLDTHL 141
Query: 123 PVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPER 182
V +LI+MYG G + AR +F +M + I+WN++V+ R GDM ELFD+MP R
Sbjct: 142 FVGTTLISMYGECGFVGFARKVFDEMPEPNAIAWNAMVTACCRGGDMKGGRELFDLMPVR 201
Query: 183 NVVSWNIMISGYSKSGNPGCSLKLF-------------------------------REMM 211
N++SWN+M++GY+K+G + ++F RE+
Sbjct: 202 NLMSWNVMLAGYTKAGELELAREMFLEMPMKDDVSWSTMIVGFAHNGYFEEAFSFFRELQ 261
Query: 212 KSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVE 271
+ G R N+ ++ VL+AC ++ G+ +HG+ ++ L + ++ AL+D YSKC V
Sbjct: 262 RKGMRPNETSLTGVLSACAQAGALEFGKILHGFIEKSGLAWIVSVNNALLDTYSKCGNVL 321
Query: 272 VAQRVFDS-MADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIG 330
+AQ VF+ M +RN+V W +M+ +HG EE I +F + I PDEI FI
Sbjct: 322 MAQLVFERIMNERNIVSWTSMMAALAMHGHGEEAIGIFHKMEE-----SGIRPDEIAFIS 376
Query: 331 VICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPED 390
++ AC A L+ +G +YF +M Y I+P+ HY CM +LY A ++A E + +MP
Sbjct: 377 LLYACSHAGLVEQGCEYFDKMKGMYNIEPSIEHYGCMVDLYGRAGQLQKAYEFVCQMP-- 434
Query: 391 NDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWED 450
+ +I+W +LL C G V + E++ + ++DP + S + L N YAVAG+W+D
Sbjct: 435 ---IPCTAIIWRTLLGACSMHGDVKLAEQVKERLSELDPNNSSDHVLLSNAYAVAGKWKD 491
Query: 451 VARVRELMKKRRMGRMPGCRLVDLKEVVEKLKVG 484
A VR M ++R+ + PG ++++ +++ G
Sbjct: 492 AASVRRSMTEQRITKTPGWSMIEVDKIMYTFLAG 525
>gi|147791533|emb|CAN68456.1| hypothetical protein VITISV_025676 [Vitis vinifera]
Length = 768
Score = 287 bits (734), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 156/483 (32%), Positives = 252/483 (52%), Gaps = 12/483 (2%)
Query: 1 MKQLLQIQAHLITSGLFFNN-SFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVI 59
+++L QI +T GL + LL GSP VF I NP +I
Sbjct: 267 LEKLKQIHGKAVTLGLLCSKRQHLACKLLNTYTQLGSPVDAQKVFNHIQNPDIVSWTCLI 326
Query: 60 KAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVD 119
Y ++ P + + + +G P+S+ V +C + G + HG+ + +
Sbjct: 327 SLYLHTSQPCKAFSIFSHLFHSGLRPDSFCVVGAVSACGHRKDLSNGRIVHGMVFRFELG 386
Query: 120 FELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIM 179
+ V N+LI+MY GA++ A ++F M +D+ SW S+++G ++ D+ AA +FD M
Sbjct: 387 SDPIVGNALIDMYSRSGAIEVACSVFKTMEIKDVSSWTSLLNGFIKCNDIEAARRIFDEM 446
Query: 180 PERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFR-GNDKTMASVLTACGRSARFNEG 238
P RN VSW MI+GY + P L+LF+EM G T+ +VL+ C F+ G
Sbjct: 447 PMRNSVSWTAMITGYVQGEVPIPGLELFQEMRAEGKDWPTVITIVAVLSGCADIGAFDLG 506
Query: 239 RSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIH 298
SVHGY +T+L ++ ++ AL+D+Y+K + +A ++F M R++ W MI G +H
Sbjct: 507 SSVHGYVNKTNLDLDVTVNNALMDMYAKSGALVLALKIFQEMPKRDVFSWTTMISGLALH 566
Query: 299 GKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIK 358
GK ++ F+ + + P+E+T + V+ AC A L+ EGR F++M+ + IK
Sbjct: 567 GKGTHALEAFSDM-----SKSGXXPNEVTLLSVLSACSHAGLVVEGRSLFQKMVQCHGIK 621
Query: 359 PNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVE 418
P HY CM +L A L EA+E++ MP D S++W SLLS C G +A+ E
Sbjct: 622 PKIQHYGCMVDLLGRAGLLREAKELIEHMPIKPD-----SVIWRSLLSACLVHGNLALAE 676
Query: 419 RLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLKEVV 478
K ++++P D Y L N+Y A +WED + R+ M+ RR+ + PGC V++ VV
Sbjct: 677 MAGKMIIELEPDDDGVYILLWNIYCSASRWEDALKARKAMRDRRVKKKPGCSWVEVNGVV 736
Query: 479 EKL 481
+
Sbjct: 737 HEF 739
>gi|224134663|ref|XP_002327460.1| predicted protein [Populus trichocarpa]
gi|222836014|gb|EEE74435.1| predicted protein [Populus trichocarpa]
Length = 540
Score = 286 bits (731), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 162/486 (33%), Positives = 261/486 (53%), Gaps = 12/486 (2%)
Query: 1 MKQLLQIQAHLITSGLFFN--NSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAV 58
+ QL QIQ+HL + + + I+L HS S Y +F C+ N TF N +
Sbjct: 24 ISQLKQIQSHLTVTATLKDPYAAAKIISLHAHSNARSSLFYAERLFLCLQNKSTFIWNTM 83
Query: 59 IKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGV 118
++A+ + Y M+++ ++PN++TF + +C ++ G HG +K G
Sbjct: 84 MQAFVEKNEAVRAFSLYKHMLESNYLPNNFTFSFVIRACIDVFNLQMGLCFHGQVVKFGW 143
Query: 119 DFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDI 178
+ V N LI++Y G MD ARNMF RD+++W ++SG++ SG + A ELFD
Sbjct: 144 ESYDFVQNGLIHLYANCGFMDLARNMFDMSIKRDVVTWTCLISGYLNSGQVLIARELFDR 203
Query: 179 MPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEG 238
MPE+N VSW +I+GY + G +L++F +M SGFR N ++ LTAC ++G
Sbjct: 204 MPEKNPVSWGALIAGYVRIGFFKEALEVFYDMQVSGFRLNRASIVGALTACAFLGALDQG 263
Query: 239 RSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIH 298
R +H Y R + + +L TALID+Y+KC +E+A VFD M DR++ + +I G H
Sbjct: 264 RWIHAYVKRHHMSLDRMLGTALIDMYAKCGCIEMACSVFDEMDDRDVYAFTCLISGLANH 323
Query: 299 GKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIK 358
K E I LF + + V P+E+TF+ V+ AC R ++ EG + F M + Y I+
Sbjct: 324 DKSEAAIDLFNRMQDEGVV-----PNEVTFVCVLNACSRMGMVDEGLRIFESMSNRYVIE 378
Query: 359 PNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVE 418
P HY C+ +L A EEA++++R+MP D+ + +LL CR G V + E
Sbjct: 379 PQIQHYGCLVDLLGRAGKIEEAKQVVREMPLQPDSYTLG-----ALLDACRVHGDVQLGE 433
Query: 419 RLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLKEVV 478
+ S V + L N+YA A +WED +++R+ M+ + + ++PGC +++ V
Sbjct: 434 EMVDSLVQRCLDHGGVHVLLSNMYASADKWEDASKIRKKMEDKNIRKLPGCSSIEVNGTV 493
Query: 479 EKLKVG 484
+ G
Sbjct: 494 CEFVTG 499
>gi|225466163|ref|XP_002263755.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Vitis vinifera]
Length = 624
Score = 286 bits (731), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 164/513 (31%), Positives = 270/513 (52%), Gaps = 14/513 (2%)
Query: 1 MKQLLQIQAHLITSGLFFNNSFWTINLLKHSA--DFGSPDYTVLVFKCINNPGTFCVNAV 58
M +L Q + +I GL +N ++K A G +Y + VF I +P + N +
Sbjct: 33 MAELKQYHSQIIRLGLSADNDAMG-RVIKFCAISKSGDLNYALEVFDKIPHPDAYIYNTI 91
Query: 59 IKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGV 118
+ Y + + Y +M+ PN +T+ L +C +E G H LK G
Sbjct: 92 FRGYLRWQLARNCIFMYSRMLHKSVSPNKFTYPPLIRACCIDYAIEEGKQIHAHVLKFGF 151
Query: 119 DFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDI 178
+ +N+LI+MY F +++ AR +F M RD++SW S+++G+ + G + A E+F++
Sbjct: 152 GADGFSLNNLIHMYVNFQSLEQARRVFDNMPQRDVVSWTSLITGYSQWGFVDKAREVFEL 211
Query: 179 MPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEG 238
MPERN VSWN MI+ Y +S + LF M + AS+L+AC +G
Sbjct: 212 MPERNSVSWNAMIAAYVQSNRLHEAFALFDRMRLENVVLDKFVAASMLSACTGLGALEQG 271
Query: 239 RSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIH 298
+ +HGY ++ ++ + L T +ID+Y KC +E A VF+ + + + WN MI G +H
Sbjct: 272 KWIHGYIEKSGIELDSKLATTVIDMYCKCGCLEKASEVFNELPQKGISSWNCMIGGLAMH 331
Query: 299 GKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIK 358
GK E I+LF + VA PD ITF+ V+ AC + L+ EG+ YF+ M + +K
Sbjct: 332 GKGEAAIELFKEMEREMVA-----PDGITFVNVLSACAHSGLVEEGKHYFQYMTEVLGLK 386
Query: 359 PNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVE 418
P H+ CM +L A L EEA +++ +MP + D + + +L+ CR G + E
Sbjct: 387 PGMEHFGCMVDLLGRAGLLEEARKLINEMPVNPD-----AGVLGALVGACRIHGNTELGE 441
Query: 419 RLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLKEVV 478
++ K ++++P + RY L N+YA AG+WEDVA+VR+LM R + + PG +++ + V
Sbjct: 442 QIGKKVIELEPHNSGRYVLLANLYASAGRWEDVAKVRKLMNDRGVKKAPGFSMIESESGV 501
Query: 479 EKLKVGHFWRGGMKEEVNKMMECRQS-RSLATV 510
++ G KE K+ E ++ RS+ V
Sbjct: 502 DEFIAGGRAHPQAKEIYAKLDEILETIRSIGYV 534
>gi|449436619|ref|XP_004136090.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g15930-like [Cucumis sativus]
Length = 723
Score = 285 bits (730), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 163/509 (32%), Positives = 259/509 (50%), Gaps = 11/509 (2%)
Query: 6 QIQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSNS 65
Q+ H++ GL +N F L++ G D VF N +I AY+
Sbjct: 139 QLHGHVLKHGLQYN-VFVHTALVQMYLLCGQLDTARGVFDVCPKADVITWNMIISAYNKV 197
Query: 66 CVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVM 125
++ +L M +P + T V + +C+K + G H V+ L +
Sbjct: 198 GKFEESRRLFLVMEDKQVLPTTVTLVLVLSACSKLKDLRTGKKVHSYVKNCKVESNLVLE 257
Query: 126 NSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVV 185
N++I+MY G MD A +F M+ RD+ISW +IVSG G++ A FD MPE++ V
Sbjct: 258 NAMIDMYADCGEMDSALGIFRSMNNRDIISWTTIVSGFTNLGEIDVARNYFDKMPEKDYV 317
Query: 186 SWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYT 245
SW MI GY +S +L+LFR M + + ++ TM SVLTAC G + Y
Sbjct: 318 SWTAMIDGYIRSNRFKEALELFRNMQATNVKPDEFTMVSVLTACAHLGALELGEWIRTYI 377
Query: 246 VRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGI 305
R +K ++ + ALID+Y KC V+ A+ +F M+ R+ W AMI+G ++G E+ +
Sbjct: 378 DRNKIKNDLFVRNALIDMYFKCGDVDKAESIFREMSQRDKFTWTAMIVGLAVNGHGEKAL 437
Query: 306 KLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYW 365
+F+ ++ SI PDEIT+IGV+ AC L+ +GRKYF +M + I+PN AHY
Sbjct: 438 DMFSNMLK-----ASILPDEITYIGVLSACTHTGLVDKGRKYFLRMTSQHGIEPNIAHYG 492
Query: 366 CMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFV 425
C+ +L A A +EA E++ MP + SI+W +LL+ CR M E + K +
Sbjct: 493 CLVDLLARAGRLKEAYEVIENMP-----IKANSIVWGALLAGCRVYRESDMAEMVVKQIL 547
Query: 426 DMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLKEVVEKLKVGH 485
+++P + + Y L N+YA +W D+ +R++M + + + PGC L+++ V + G
Sbjct: 548 ELEPDNGAVYVLLCNIYAACKRWNDLRELRQMMMDKGIKKTPGCSLIEMNGRVHEFVAGD 607
Query: 486 FWRGGMKEEVNKMMECRQSRSLATVSKQL 514
K K+ + Q LA S +
Sbjct: 608 RSHPQTKNIDAKLDKMTQDLKLAGYSPDI 636
Score = 169 bits (428), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 136/549 (24%), Positives = 234/549 (42%), Gaps = 104/549 (18%)
Query: 1 MKQLLQIQAHLITSGLFFNNSFWT-INLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVI 59
M QL Q+ I GL N + + ++G Y +F I P F N +I
Sbjct: 31 MDQLQQVHCQAIKKGLNANPVLQNRVMTFCCTHEYGDFQYARRLFDEIPEPNLFIWNTMI 90
Query: 60 KAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVD 119
+ YS P GV YL+M++ G P+ YTF LF + +E G HG LK+G+
Sbjct: 91 RGYSRLDFPQLGVSLYLEMLRRGVKPDRYTFPFLFKGFTRDIALEYGRQLHGHVLKHGLQ 150
Query: 120 FELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIM 179
+ + V +L+ MY G +D AR +F D+I+WN I+S + + G + LF +M
Sbjct: 151 YNVFVHTALVQMYLLCGQLDTARGVFDVCPKADVITWNMIISAYNKVGKFEESRRLFLVM 210
Query: 180 PERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGR 239
++ V+ + T+ VL+AC + G+
Sbjct: 211 EDKQVLPTTV-------------------------------TLVLVLSACSKLKDLRTGK 239
Query: 240 SVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHG 299
VH Y ++ N++L+ A+ID+Y+ C +++ A +F SM +R+++ W ++ G G
Sbjct: 240 KVHSYVKNCKVESNLVLENAMIDMYADCGEMDSALGIFRSMNNRDIISWTTIVSGFTNLG 299
Query: 300 K-----------PEEGIKLFTALVNGTV---------------AGGSISPDEITFIGVIC 333
+ PE+ +TA+++G + ++ PDE T + V+
Sbjct: 300 EIDVARNYFDKMPEKDYVSWTAMIDGYIRSNRFKEALELFRNMQATNVKPDEFTMVSVLT 359
Query: 334 ACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDN-- 391
AC L G ++ R ID KIK + + ++Y ++AE I R+M + +
Sbjct: 360 ACAHLGALELG-EWIRTYIDRNKIKNDLFVRNALIDMYFKCGDVDKAESIFREMSQRDKF 418
Query: 392 ----------------------DNMSFESIM-----WVSLLSLCRFQGAVAMVERLAKSF 424
NM SI+ ++ +LS C G +V++ K F
Sbjct: 419 TWTAMIVGLAVNGHGEKALDMFSNMLKASILPDEITYIGVLSACTHTG---LVDKGRKYF 475
Query: 425 VDMDPQ-----DFSRYQFLLNVYAVAGQWEDVARVRELMKKRRM-----GRMPGCRLV-- 472
+ M Q + + Y L+++ A AG+ ++ V E M + + GCR+
Sbjct: 476 LRMTSQHGIEPNIAHYGCLVDLLARAGRLKEAYEVIENMPIKANSIVWGALLAGCRVYRE 535
Query: 473 -DLKEVVEK 480
D+ E+V K
Sbjct: 536 SDMAEMVVK 544
>gi|449491161|ref|XP_004158817.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
repeat-containing protein At3g15930-like [Cucumis
sativus]
Length = 744
Score = 285 bits (729), Expect = 4e-74, Method: Compositional matrix adjust.
Identities = 163/509 (32%), Positives = 259/509 (50%), Gaps = 11/509 (2%)
Query: 6 QIQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSNS 65
Q+ H++ GL +N F L++ G D VF N +I AY+
Sbjct: 160 QLHGHVLKHGLQYN-VFVHTALVQMYLLCGQLDTARGVFDVCPKADVITWNMIISAYNKV 218
Query: 66 CVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVM 125
++ +L M +P + T V + +C+K + G H V+ L +
Sbjct: 219 GKFEESRRLFLVMEDKQVLPTTVTLVLVLSACSKLKDLRTGKKVHSYVKNCKVESNLVLE 278
Query: 126 NSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVV 185
N++I+MY G MD A +F M+ RD+ISW +IVSG G++ A FD MPE++ V
Sbjct: 279 NAMIDMYADCGEMDSALGIFRSMNNRDIISWTTIVSGFTNLGEIDVARNYFDKMPEKDYV 338
Query: 186 SWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYT 245
SW MI GY +S +L+LFR M + + ++ TM SVLTAC G + Y
Sbjct: 339 SWTAMIDGYIRSNRFKEALELFRNMQATNVKPDEFTMVSVLTACAHLGALELGEWIRTYI 398
Query: 246 VRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGI 305
R +K ++ + ALID+Y KC V+ A+ +F M+ R+ W AMI+G ++G E+ +
Sbjct: 399 DRNKIKNDLFVRNALIDMYFKCGDVDKAESIFREMSQRDKFTWTAMIVGLAVNGHGEKAL 458
Query: 306 KLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYW 365
+F+ ++ SI PDEIT+IGV+ AC L+ +GRKYF +M + I+PN AHY
Sbjct: 459 DMFSNMLK-----ASILPDEITYIGVLSACTHTGLVDKGRKYFLRMTSQHGIEPNIAHYG 513
Query: 366 CMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFV 425
C+ +L A A +EA E++ MP + SI+W +LL+ CR M E + K +
Sbjct: 514 CLVDLLARAGRLKEAYEVIENMP-----IKANSIVWGALLAGCRVYRESDMAEMVVKQIL 568
Query: 426 DMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLKEVVEKLKVGH 485
+++P + + Y L N+YA +W D+ +R++M + + + PGC L+++ V + G
Sbjct: 569 ELEPDNGAVYVLLCNIYAACKRWNDLRELRQMMMDKGIKKXPGCSLIEMNGRVHEFVAGD 628
Query: 486 FWRGGMKEEVNKMMECRQSRSLATVSKQL 514
K K+ + Q LA S +
Sbjct: 629 RSHPQTKNIDAKLDKMTQDLKLAGYSPDI 657
Score = 169 bits (428), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 136/549 (24%), Positives = 234/549 (42%), Gaps = 104/549 (18%)
Query: 1 MKQLLQIQAHLITSGLFFNNSFWT-INLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVI 59
M QL Q+ I GL N + + ++G Y +F I P F N +I
Sbjct: 52 MDQLQQVHCQAIKKGLNANPVLQNRVMTFCCTHEYGDFQYARRLFDEIPEPNLFIWNTMI 111
Query: 60 KAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVD 119
+ YS P GV YL+M++ G P+ YTF LF + +E G HG LK+G+
Sbjct: 112 RGYSRLDFPQLGVSLYLEMLRRGVKPDRYTFPFLFKGFTRDIALEYGRQLHGHVLKHGLQ 171
Query: 120 FELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIM 179
+ + V +L+ MY G +D AR +F D+I+WN I+S + + G + LF +M
Sbjct: 172 YNVFVHTALVQMYLLCGQLDTARGVFDVCPKADVITWNMIISAYNKVGKFEESRRLFLVM 231
Query: 180 PERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGR 239
++ V+ + T+ VL+AC + G+
Sbjct: 232 EDKQVLPTTV-------------------------------TLVLVLSACSKLKDLRTGK 260
Query: 240 SVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHG 299
VH Y ++ N++L+ A+ID+Y+ C +++ A +F SM +R+++ W ++ G G
Sbjct: 261 KVHSYVKNCKVESNLVLENAMIDMYADCGEMDSALGIFRSMNNRDIISWTTIVSGFTNLG 320
Query: 300 K-----------PEEGIKLFTALVNGTV---------------AGGSISPDEITFIGVIC 333
+ PE+ +TA+++G + ++ PDE T + V+
Sbjct: 321 EIDVARNYFDKMPEKDYVSWTAMIDGYIRSNRFKEALELFRNMQATNVKPDEFTMVSVLT 380
Query: 334 ACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDN-- 391
AC L G ++ R ID KIK + + ++Y ++AE I R+M + +
Sbjct: 381 ACAHLGALELG-EWIRTYIDRNKIKNDLFVRNALIDMYFKCGDVDKAESIFREMSQRDKF 439
Query: 392 ----------------------DNMSFESIM-----WVSLLSLCRFQGAVAMVERLAKSF 424
NM SI+ ++ +LS C G +V++ K F
Sbjct: 440 TWTAMIVGLAVNGHGEKALDMFSNMLKASILPDEITYIGVLSACTHTG---LVDKGRKYF 496
Query: 425 VDMDPQ-----DFSRYQFLLNVYAVAGQWEDVARVRELMKKRRM-----GRMPGCRLV-- 472
+ M Q + + Y L+++ A AG+ ++ V E M + + GCR+
Sbjct: 497 LRMTSQHGIEPNIAHYGCLVDLLARAGRLKEAYEVIENMPIKANSIVWGALLAGCRVYRE 556
Query: 473 -DLKEVVEK 480
D+ E+V K
Sbjct: 557 SDMAEMVVK 565
>gi|449467070|ref|XP_004151248.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Cucumis sativus]
Length = 617
Score = 285 bits (729), Expect = 4e-74, Method: Compositional matrix adjust.
Identities = 155/485 (31%), Positives = 262/485 (54%), Gaps = 17/485 (3%)
Query: 3 QLLQIQAHLITSGLFFNNSFWTINLLKHSA--DFGSP-DYTVLVFKCINNPGTFCVNAVI 59
+L Q+ AHL+ + N+ ++ L + ++ F S Y L+F+ ++ N +
Sbjct: 30 ELKQLHAHLLKT----NSPLSSLPLSRVASVCAFNSSFSYAKLIFQLLDASEVTHWNTCL 85
Query: 60 KAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVD 119
++++ P + + ++ + P+ YT + +C++ V G + HG K G+
Sbjct: 86 RSFAEGDSPADAISLFYRLREFDISPDHYTCSFVLKACSRLLDVRNGKIVHGYVEKLGLQ 145
Query: 120 FELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIM 179
+ + N ++++Y G + AR +F +M RD+I+WN +++ V+ GD A++LF M
Sbjct: 146 SNMFLQNMIVHLYALCGEIGVARKVFDKMPQRDVITWNIMIARLVKMGDAEGAYKLFAEM 205
Query: 180 PERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGR 239
PERNV SW MI GY++ G ++ LF EM +G N+ T+ +VL AC GR
Sbjct: 206 PERNVRSWTSMIGGYAQCGKSKEAIDLFLEMEDAGLLPNEVTVVAVLVACADMGNLVLGR 265
Query: 240 SVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHG 299
+H ++ R+ + NI + LID+Y KC +E A R+FD+M +R +V W+AMI G HG
Sbjct: 266 RIHDFSNRSGYEKNIRVCNTLIDMYVKCGCLEDACRIFDNMEERTVVSWSAMIAGLAAHG 325
Query: 300 KPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKP 359
+ E+ + LF ++N + P+ +TFIG++ AC ++ +GRKYF M Y I P
Sbjct: 326 RAEDALALFNKMIN-----TGVKPNAVTFIGILHACSHMGMVEKGRKYFASMTRDYGIVP 380
Query: 360 NFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVER 419
HY CM +L++ A L +EA E + MP ++ ++W +LL C+ + + E
Sbjct: 381 RIEHYGCMVDLFSRAGLLQEAHEFIMNMP-----IAPNGVVWGALLGGCKVHKNIKLAEE 435
Query: 420 LAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLKEVVE 479
+ +DP + Y L N+YA AG+WEDVARVR+LM+ R + + PG + ++ VV
Sbjct: 436 ATRHLSKLDPLNDGYYVVLSNIYAEAGRWEDVARVRKLMRDRGVKKTPGWSSIMVEGVVY 495
Query: 480 KLKVG 484
G
Sbjct: 496 NFVAG 500
Score = 92.4 bits (228), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 61/250 (24%), Positives = 105/250 (42%), Gaps = 26/250 (10%)
Query: 123 PVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPER 182
P + L N F ++ SP + + + S + S A +F ++
Sbjct: 17 PSTHLLHNFTSPFELKQLHAHLLKTNSPLSSLPLSRVASVCAFNSSFSYAKLIFQLLDAS 76
Query: 183 NVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVH 242
V WN + +++ +P ++ LF + + + T + VL AC R G+ VH
Sbjct: 77 EVTHWNTCLRSFAEGDSPADAISLFYRLREFDISPDHYTCSFVLKACSRLLDVRNGKIVH 136
Query: 243 GYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPE 302
GY + L+ N+ L ++ LY+ C ++ VA++VFD M R+++ WN MI G E
Sbjct: 137 GYVEKLGLQSNMFLQNMIVHLYALCGEIGVARKVFDKMPQRDVITWNIMIARLVKMGDAE 196
Query: 303 EGIKLF-----------TALVNGTVAGGS---------------ISPDEITFIGVICACV 336
KLF T+++ G G + P+E+T + V+ AC
Sbjct: 197 GAYKLFAEMPERNVRSWTSMIGGYAQCGKSKEAIDLFLEMEDAGLLPNEVTVVAVLVACA 256
Query: 337 RAELLTEGRK 346
L GR+
Sbjct: 257 DMGNLVLGRR 266
>gi|357133503|ref|XP_003568364.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g20540-like [Brachypodium distachyon]
Length = 554
Score = 285 bits (729), Expect = 4e-74, Method: Compositional matrix adjust.
Identities = 148/490 (30%), Positives = 261/490 (53%), Gaps = 17/490 (3%)
Query: 2 KQLLQIQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKA 61
+ LL++ AH + L +S+ ++ G + VF + P NA+IKA
Sbjct: 27 RDLLRVHAHAVRLSLS-QSSYLATQIVHLCNAHGRVAHATRVFSQVREPNLHLHNAMIKA 85
Query: 62 YSNSCVPDQGVVFYLQMIKNGFMP-------NSYTFVSLFGSCAKTGCVERGGMCHGLAL 114
Y+ + + Y++M++ P + +T+ L +C ++ G HG +
Sbjct: 86 YAQNHRHLDAITVYIRMLRRRPFPWISCTGGDRFTYPFLLKACGGLMALDLGKQVHGHVV 145
Query: 115 KNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHE 174
++G + V NSLI MY G + AR +F M RD++SWN+++S H R G M A
Sbjct: 146 RSGCESNAIVQNSLIEMYTRAGDLVLARKVFDGMQERDVVSWNTVISAHARLGQMRKARA 205
Query: 175 LFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSAR 234
+F+ MP++ VVSW ++SGY+ +G+ +++ FR M GF +D ++ +VL AC +
Sbjct: 206 VFNSMPDKTVVSWTALVSGYTAAGDFSGAVEAFRLMQMEGFEPDDVSIVAVLPACAQLGA 265
Query: 235 FNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILG 294
GR ++ Y R + + AL+++Y+KC ++ A ++F+ MA+++++ W+ M+ G
Sbjct: 266 LELGRWIYAYCNRHQMLRETYVCNALVEMYAKCGCIDQALQLFNGMAEKDVISWSTMVGG 325
Query: 295 HCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDF 354
HG+ +E ++LFT + G++ P+ ITF+G++ AC A LL EG YF +M D
Sbjct: 326 LAAHGRAQEAVQLFTEMER----QGTVKPNGITFVGLLSACSHAGLLDEGLDYFDRMNDV 381
Query: 355 YKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAV 414
Y I+P HY C+ +L + + +++ MP + ++ +W S+L+ CR G V
Sbjct: 382 YGIEPGVEHYGCIVDLLCRSGQIQRTLDLISDMP-----LPADAKIWGSVLNACRSHGDV 436
Query: 415 AMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDL 474
A+ V ++P+D L NVYA A +W +VA R+ ++ R M + PGC L+++
Sbjct: 437 DTAVLAAERLVALEPEDVGNLVMLANVYAAARRWSEVANTRKAIRSRSMRKTPGCSLIEV 496
Query: 475 KEVVEKLKVG 484
VV++ G
Sbjct: 497 DNVVQEFVAG 506
Score = 40.4 bits (93), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 47/94 (50%), Gaps = 4/94 (4%)
Query: 219 DKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFD 278
D MAS L AC A F + VH + VR SL + L T ++ L + +V A RVF
Sbjct: 14 DAVMAS-LRAC---ASFRDLLRVHAHAVRLSLSQSSYLATQIVHLCNAHGRVAHATRVFS 69
Query: 279 SMADRNLVCWNAMILGHCIHGKPEEGIKLFTALV 312
+ + NL NAMI + + + + I ++ ++
Sbjct: 70 QVREPNLHLHNAMIKAYAQNHRHLDAITVYIRML 103
>gi|222616851|gb|EEE52983.1| hypothetical protein OsJ_35654 [Oryza sativa Japonica Group]
Length = 632
Score = 285 bits (728), Expect = 5e-74, Method: Compositional matrix adjust.
Identities = 157/448 (35%), Positives = 246/448 (54%), Gaps = 13/448 (2%)
Query: 17 FFNNSFWTINLLKH-SADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFY 75
F S N L H A+ S D VF + ++ Y+ + + D+ +
Sbjct: 173 FVGESVLVGNALVHFYANHKSLDDAGKVFDEMPERDVVSWTTLVDGYARAGLADEAWRLF 232
Query: 76 LQMIKNGFM-PNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGC 134
+M+ G M PN+ T V+ + + G + G M H + GV + + N+L++M+G
Sbjct: 233 CRMVVVGGMRPNAVTLVAAVSAIGQMGLLAFGIMLHKYVTEGGVARSVNLDNALVDMFGK 292
Query: 135 FGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGY 194
G + AR +F M +D+ SW S+V+ + + GD+ +A +LF MP RNVVSW+ MI+ Y
Sbjct: 293 CGCVRYAREVFDGMEVKDVYSWTSMVNAYAKCGDLESAEQLFKDMPRRNVVSWSCMIAAY 352
Query: 195 SKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVH-GYTVRTSLKPN 253
S+ P ++ LFREM+ +G D T+ SVL+AC + + GR ++ Y V +
Sbjct: 353 SQLNQPEEAVWLFREMIAAGVDPIDATLVSVLSACAQLGCLDLGRWIYENYIVSNKIGLT 412
Query: 254 IILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVN 313
+ L ALID+++KC V A ++FD MA+RN+V WN MI+ H +HG+ EE I+LF L
Sbjct: 413 VNLGNALIDMFAKCGDVGEASKLFDEMAERNVVSWNTMIMAHAVHGQSEEAIRLFEQL-- 470
Query: 314 GTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAG 373
G +I PD+ITF+G++ +C + L++EGR+YF++M FY+I+P HY CM +L
Sbjct: 471 ---KGENIVPDQITFLGLLASCSHSGLVSEGRRYFKEMEMFYRIEPRVEHYACMIDLLGK 527
Query: 374 AELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFS 433
L EEA E+ R MP + D W +LL+ CR G V + +A V++DP D
Sbjct: 528 VGLLEEAFEVARGMPMEADEAG-----WGALLNACRMHGNVEIGACVADKLVELDPSDSG 582
Query: 434 RYQFLLNVYAVAGQWEDVARVRELMKKR 461
Y + +YA +W+ V +R M+ R
Sbjct: 583 IYVLMSQIYASKNKWDQVKMLRMTMRDR 610
Score = 104 bits (259), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 97/431 (22%), Positives = 172/431 (39%), Gaps = 77/431 (17%)
Query: 2 KQLLQIQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCIN---NPGTFCVNAV 58
++LLQ+ A L +GL N F L A P P + + +
Sbjct: 49 RRLLQLHALLTVTGLA-GNGFPAFGFLAFCALSTPPRLAHAAAILARASPGPNAYMLGTM 107
Query: 59 IKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGM------CHGL 112
++ + + +P + + + +++++ ++ TFV + A E GG H
Sbjct: 108 MRGFLRARLPARALGLFRRVVRDRLPADARTFVFAVKAAAAAAESEHGGTPSGGEAIHCA 167
Query: 113 ALKNG-VDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSA 171
ALK G V + V N+L++ Y ++D A +F +M RD++SW ++V G+ R+G
Sbjct: 168 ALKCGFVGESVLVGNALVHFYANHKSLDDAGKVFDEMPERDVVSWTTLVDGYARAGLADE 227
Query: 172 AHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGR 231
A LF C R ++ G R N T+ + ++A G+
Sbjct: 228 AWRLF-------------------------C-----RMVVVGGMRPNAVTLVAAVSAIGQ 257
Query: 232 SARFNEGRSVHGYTVRTSLKPNIILDTALIDL---------------------------- 263
G +H Y + ++ LD AL+D+
Sbjct: 258 MGLLAFGIMLHKYVTEGGVARSVNLDNALVDMFGKCGCVRYAREVFDGMEVKDVYSWTSM 317
Query: 264 ---YSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGS 320
Y+KC +E A+++F M RN+V W+ MI + +PEE + LF ++
Sbjct: 318 VNAYAKCGDLESAEQLFKDMPRRNVVSWSCMIAAYSQLNQPEEAVWLFREMI-----AAG 372
Query: 321 ISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEA 380
+ P + T + V+ AC + L GR + I KI + +++A EA
Sbjct: 373 VDPIDATLVSVLSACAQLGCLDLGRWIYENYIVSNKIGLTVNLGNALIDMFAKCGDVGEA 432
Query: 381 EEILRKMPEDN 391
++ +M E N
Sbjct: 433 SKLFDEMAERN 443
>gi|297798134|ref|XP_002866951.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297312787|gb|EFH43210.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 630
Score = 285 bits (728), Expect = 5e-74, Method: Compositional matrix adjust.
Identities = 154/487 (31%), Positives = 266/487 (54%), Gaps = 16/487 (3%)
Query: 1 MKQLLQIQAHLITSGLFFNNSFWTINLLKHSA--DFGSPDYTVLVFKCINNPGTFCVNAV 58
+ ++LQI A ++ L + + +NL H A G +++ +F +P F A
Sbjct: 40 VDEVLQIHAAILRHNLLIHPRYPVLNLKLHRAYASHGKIRHSLALFHQTIDPDLFLFTAA 99
Query: 59 IKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGV 118
I S + + DQ + Y+Q++ + PN +TF S+ SC+ + G + H LK G+
Sbjct: 100 INTASINGLKDQAFLLYVQLLSSQINPNEFTFSSILKSCS----TKSGKLIHTHVLKFGL 155
Query: 119 DFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDI 178
+ V L+++Y G + A+ +F +M R L+S ++++ + + G++ AA LFD
Sbjct: 156 GLDPYVATGLVDIYAKGGDVVSAQKVFDRMPERSLVSSTAMITCYAKQGNVEAARALFDR 215
Query: 179 MPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDK-TMASVLTACGRSARFNE 237
M ER++VSWN+MI GYS+ G P +L LF++++ G D+ T+ + L+AC +
Sbjct: 216 MCERDIVSWNVMIDGYSQHGFPSDALMLFQKLLADGKPKPDEITVVAALSACSQIGALET 275
Query: 238 GRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCI 297
GR +H + + ++ N+ + TALID+YSKC +E A VF+ +++V WNAMI G+ +
Sbjct: 276 GRWIHVFVNSSRIRLNVKVCTALIDMYSKCGSLEEAVLVFNDTPRKDIVAWNAMITGYAM 335
Query: 298 HGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKI 357
HG ++ ++LF + T + P +ITFIG + AC A L+ EG + F M Y I
Sbjct: 336 HGYSQDALRLFDEMQGIT----GLQPTDITFIGTLQACAHAGLVNEGIQIFESMGQEYGI 391
Query: 358 KPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMV 417
KP HY C+ +L A + A EI++ M NM +S++W S+L C+ G +
Sbjct: 392 KPKIEHYGCLVSLLGRAGQLKRAYEIIKNM-----NMEADSVLWSSVLGSCKLHGEFMLG 446
Query: 418 ERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLKEV 477
+ +A+ + + + Y L N+YA+ G +E VA+VR LMK++ + + PG +++
Sbjct: 447 KEIAEYLIGQNISNSGIYVLLSNIYALVGDYEGVAKVRNLMKEKGIVKEPGISTIEIDNK 506
Query: 478 VEKLKVG 484
V + + G
Sbjct: 507 VHEFRAG 513
>gi|222631730|gb|EEE63862.1| hypothetical protein OsJ_18686 [Oryza sativa Japonica Group]
Length = 551
Score = 285 bits (728), Expect = 5e-74, Method: Compositional matrix adjust.
Identities = 154/491 (31%), Positives = 256/491 (52%), Gaps = 19/491 (3%)
Query: 2 KQLLQIQAHLITSGLFFNNSFWTINLLKHSAD-FGSPDYTVLVFKCINNPGTFCVNAVIK 60
+ LL++ H++ L + S + + H + + VF + +P NA+IK
Sbjct: 28 RDLLRVHGHVVR--LRISQSSYLATQIVHLCNAHRRVTHAARVFAQVRDPNLHLHNAMIK 85
Query: 61 AYSNSCVPDQGVVFYLQMIKNGFMP-------NSYTFVSLFGSCAKTGCVERGGMCHGLA 113
AY+ + V Y++M++ P + +T+ L +C T +E G H
Sbjct: 86 AYAQNHQHRDAVAVYIRMLRCPTSPPDGHAGGDRFTYPFLLKACGGTAALELGKQVHTHV 145
Query: 114 LKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAH 173
+++G D V NSLI MY G + A +F +M RD++SWN ++S H R G M A
Sbjct: 146 VRSGCDSSAIVQNSLIEMYTRAGDLALAHKVFDEMRERDVVSWNMLISAHARLGQMRKAT 205
Query: 174 ELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSA 233
LF+ MP++ +V+W M+SGY+ G+ ++ FR M GF +D ++ +VL AC +
Sbjct: 206 ALFNSMPDKTIVTWTAMVSGYTTVGDYPGAVDAFRSMQTEGFEPDDVSIVAVLPACAQLG 265
Query: 234 RFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMIL 293
GR ++ Y R + + + AL+++Y+KC ++ A ++FD MAD++++ W+ +I
Sbjct: 266 TLELGRWIYAYCKRHGMLTSTHICNALMEMYAKCGCIDQALQLFDGMADKDVISWSTVIG 325
Query: 294 GHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMID 353
G HG+ E + LFT + G + P+ ITF+G++ AC A L+ EG +F +M D
Sbjct: 326 GLAAHGRAHEAVWLFTEMEK----EGKVRPNVITFVGLLSACSYAGLVDEGLSHFDRMND 381
Query: 354 FYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGA 413
Y ++P HY C+ +L + A +++R MP D + +W SLLS CR G
Sbjct: 382 VYGVEPGVEHYGCVVDLLGRSGQIRRALDLVRDMPVPAD-----AKVWGSLLSACRSHGD 436
Query: 414 VAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVD 473
V A+ V+++P D L NVYA A +W DVA R+ ++ R M + PGC L++
Sbjct: 437 VDTAVLAAERLVELEPDDVGNLVMLANVYAAARRWSDVASTRKAIRSRSMRKTPGCSLIE 496
Query: 474 LKEVVEKLKVG 484
+ VV + G
Sbjct: 497 VGNVVREFVAG 507
Score = 41.2 bits (95), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 34/137 (24%), Positives = 61/137 (44%), Gaps = 6/137 (4%)
Query: 218 NDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVF 277
D MA L AC F + VHG+ VR + + L T ++ L + ++V A RVF
Sbjct: 14 EDAVMAR-LRAC---VTFRDLLRVHGHVVRLRISQSSYLATQIVHLCNAHRRVTHAARVF 69
Query: 278 DSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVA--GGSISPDEITFIGVICAC 335
+ D NL NAMI + + + + + ++ ++ + G D T+ ++ AC
Sbjct: 70 AQVRDPNLHLHNAMIKAYAQNHQHRDAVAVYIRMLRCPTSPPDGHAGGDRFTYPFLLKAC 129
Query: 336 VRAELLTEGRKYFRQMI 352
L G++ ++
Sbjct: 130 GGTAALELGKQVHTHVV 146
>gi|297839333|ref|XP_002887548.1| hypothetical protein ARALYDRAFT_339650 [Arabidopsis lyrata subsp.
lyrata]
gi|297333389|gb|EFH63807.1| hypothetical protein ARALYDRAFT_339650 [Arabidopsis lyrata subsp.
lyrata]
Length = 1221
Score = 285 bits (728), Expect = 5e-74, Method: Compositional matrix adjust.
Identities = 163/516 (31%), Positives = 271/516 (52%), Gaps = 46/516 (8%)
Query: 1 MKQLLQIQAHLITSGLFFNNSFWTINLLKHSADFGSP--DYTVLVFKCINNPGTFCVNAV 58
++ L QI I SG+ +S++ L+ H A S Y + C P F N +
Sbjct: 185 LRALTQIHGFFIKSGVD-TDSYFIGKLILHCAISISDALPYARRLLLCFPEPDAFMFNTL 243
Query: 59 IKAYSNSCVPDQGVVFYLQMIKNGFM-PNSYTFVSLFGSCAKTGCVERGGMCHGLALKNG 117
++ YS S P V +++M++ GF+ P+S++F + + A + G H ALK+G
Sbjct: 244 VRGYSESDEPHNSVAVFVEMMRKGFIFPDSFSFAFVVKAAANFRSLRTGFQMHCQALKHG 303
Query: 118 VDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFD 177
+D L V +LI MYG G + AR +F +M +L++WN++V+ R D+S A E+FD
Sbjct: 304 LDSHLFVATTLIGMYGECGCVGFARKVFDEMPQPNLVAWNAVVTACFRGNDVSGAREIFD 363
Query: 178 IMPERNVVSWNIMISGYSKSGNPGC-------------------------------SLKL 206
M RN SWN+M++GY K+G C S
Sbjct: 364 KMLVRNHTSWNVMLAGYIKAGELECAKRIFSEMPHRDDVSWSTMIVGFSHNGSFNESFSY 423
Query: 207 FREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSK 266
FRE++++ R N+ ++ VL+AC +S F G+++HG+ ++ + ++ ALID+YS+
Sbjct: 424 FRELLRAEMRPNEVSLTGVLSACSQSGAFEFGKTLHGFVEKSGYSWIVSVNNALIDMYSR 483
Query: 267 CQKVEVAQRVFDSMAD-RNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDE 325
C V +A+ VF+ M + R++V W +MI G +HG EE I++F + V PDE
Sbjct: 484 CGNVPMARLVFEGMQEKRSIVSWTSMIAGLAMHGHGEEAIRIFNEMTESGVM-----PDE 538
Query: 326 ITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILR 385
I+FI ++ AC A L+ EG YF +M Y I+P HY CM +LY + ++A +
Sbjct: 539 ISFISLLYACSHAGLIKEGEGYFSKMKRVYHIEPAVEHYGCMVDLYGRSGKLQKAYSFIC 598
Query: 386 KMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVA 445
+MP + +I+W +LL C G + + E++ + ++DP + L NVYA A
Sbjct: 599 QMP-----IPPTAIVWRTLLGACSSHGNIELAEQVKQRLNELDPNNSGDLVLLSNVYATA 653
Query: 446 GQWEDVARVRELMKKRRMGRMPGCRLVDLKEVVEKL 481
G+W+DVA +R+ M +R+ ++ LV++ + + K
Sbjct: 654 GKWKDVASIRKSMIVQRIKKITAWSLVEVGKTMYKF 689
>gi|125552488|gb|EAY98197.1| hypothetical protein OsI_20110 [Oryza sativa Indica Group]
Length = 551
Score = 284 bits (727), Expect = 7e-74, Method: Compositional matrix adjust.
Identities = 154/491 (31%), Positives = 256/491 (52%), Gaps = 19/491 (3%)
Query: 2 KQLLQIQAHLITSGLFFNNSFWTINLLKHSAD-FGSPDYTVLVFKCINNPGTFCVNAVIK 60
+ LL++ H++ L + S + + H + + VF + +P NA+IK
Sbjct: 28 RDLLRVHGHVVR--LRISQSSYLATQIVHLCNAHRRVTHAARVFAQVRDPNLHLHNAMIK 85
Query: 61 AYSNSCVPDQGVVFYLQMIKNGFMP-------NSYTFVSLFGSCAKTGCVERGGMCHGLA 113
AY+ + V Y++M++ P + +T+ L +C T +E G H
Sbjct: 86 AYAQNHQHRDAVAVYIRMLRCPTSPPDGHAGGDRFTYPFLLKACGGTAALELGKQVHTHV 145
Query: 114 LKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAH 173
+++G D V NSLI MY G + A +F +M RD++SWN ++S H R G M A
Sbjct: 146 VRSGCDSSAIVQNSLIEMYTRAGDLALAHKVFDEMRERDVVSWNMLISAHARLGQMRKAT 205
Query: 174 ELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSA 233
LF+ MP++ +V+W M+SGY+ G+ ++ FR M GF +D ++ +VL AC +
Sbjct: 206 ALFNSMPDKTIVTWTAMVSGYTTVGDYPGAVDAFRSMQTEGFEPDDVSIVAVLPACAQLG 265
Query: 234 RFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMIL 293
GR ++ Y R + + + AL+++Y+KC ++ A ++FD MAD++++ W+ +I
Sbjct: 266 ALELGRWIYAYCKRHGMLTSTHICNALMEMYAKCGCIDQALQLFDGMADKDVISWSTVIG 325
Query: 294 GHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMID 353
G HG+ E + LFT + G + P+ ITF+G++ AC A L+ EG +F +M D
Sbjct: 326 GLAAHGRAHEAVWLFTEMEK----EGKVRPNVITFVGLLSACSYAGLVDEGLSHFDRMND 381
Query: 354 FYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGA 413
Y ++P HY C+ +L + A +++R MP D + +W SLLS CR G
Sbjct: 382 VYGVEPGVEHYGCVVDLLGRSGQIRRALDLVRDMPVPAD-----AKVWGSLLSACRSHGD 436
Query: 414 VAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVD 473
V A+ V+++P D L NVYA A +W DVA R+ ++ R M + PGC L++
Sbjct: 437 VDTAVLAAERLVELEPDDVGNLVMLANVYAAARRWSDVASTRKAIRSRSMRKTPGCSLIE 496
Query: 474 LKEVVEKLKVG 484
+ VV + G
Sbjct: 497 VGNVVREFVAG 507
Score = 41.2 bits (95), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 34/137 (24%), Positives = 61/137 (44%), Gaps = 6/137 (4%)
Query: 218 NDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVF 277
D MA L AC F + VHG+ VR + + L T ++ L + ++V A RVF
Sbjct: 14 EDAVMAR-LRAC---VTFRDLLRVHGHVVRLRISQSSYLATQIVHLCNAHRRVTHAARVF 69
Query: 278 DSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVA--GGSISPDEITFIGVICAC 335
+ D NL NAMI + + + + + ++ ++ + G D T+ ++ AC
Sbjct: 70 AQVRDPNLHLHNAMIKAYAQNHQHRDAVAVYIRMLRCPTSPPDGHAGGDRFTYPFLLKAC 129
Query: 336 VRAELLTEGRKYFRQMI 352
L G++ ++
Sbjct: 130 GGTAALELGKQVHTHVV 146
>gi|297724167|ref|NP_001174447.1| Os05g0439300 [Oryza sativa Japonica Group]
gi|46981301|gb|AAT07619.1| putative pentatricopeptide repeat-containing protein [Oryza sativa
Japonica Group]
gi|215769333|dbj|BAH01562.1| unnamed protein product [Oryza sativa Japonica Group]
gi|255676403|dbj|BAH93175.1| Os05g0439300 [Oryza sativa Japonica Group]
Length = 551
Score = 284 bits (727), Expect = 7e-74, Method: Compositional matrix adjust.
Identities = 154/491 (31%), Positives = 256/491 (52%), Gaps = 19/491 (3%)
Query: 2 KQLLQIQAHLITSGLFFNNSFWTINLLKHSAD-FGSPDYTVLVFKCINNPGTFCVNAVIK 60
+ LL++ H++ L + S + + H + + VF + +P NA+IK
Sbjct: 28 RDLLRVHGHVVR--LRISQSSYLATQIVHLCNAHRRVTHAARVFAQVRDPNLHLHNAMIK 85
Query: 61 AYSNSCVPDQGVVFYLQMIKNGFMP-------NSYTFVSLFGSCAKTGCVERGGMCHGLA 113
AY+ + V Y++M++ P + +T+ L +C T +E G H
Sbjct: 86 AYAQNHQHRDAVAVYIRMLRCPTSPPDGHAGGDRFTYPFLLKACGGTAALELGKQVHTHV 145
Query: 114 LKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAH 173
+++G D V NSLI MY G + A +F +M RD++SWN ++S H R G M A
Sbjct: 146 VRSGCDSSAIVQNSLIEMYTRAGDLALAHKVFDEMRERDVVSWNMLISAHARLGQMRKAT 205
Query: 174 ELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSA 233
LF+ MP++ +V+W M+SGY+ G+ ++ FR M GF +D ++ +VL AC +
Sbjct: 206 ALFNSMPDKTIVTWTAMVSGYTTVGDYPGAVDAFRSMQTEGFEPDDVSIVAVLPACAQLG 265
Query: 234 RFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMIL 293
GR ++ Y R + + + AL+++Y+KC ++ A ++FD MAD++++ W+ +I
Sbjct: 266 ALELGRWIYAYCKRHGMLTSTHICNALMEMYAKCGCIDQALQLFDGMADKDVISWSTVIG 325
Query: 294 GHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMID 353
G HG+ E + LFT + G + P+ ITF+G++ AC A L+ EG +F +M D
Sbjct: 326 GLAAHGRAHEAVWLFTEMEK----EGKVRPNVITFVGLLSACSYAGLVDEGLSHFDRMND 381
Query: 354 FYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGA 413
Y ++P HY C+ +L + A +++R MP D + +W SLLS CR G
Sbjct: 382 VYGVEPGVEHYGCVVDLLGRSGQIRRALDLVRDMPVPAD-----AKVWGSLLSACRSHGD 436
Query: 414 VAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVD 473
V A+ V+++P D L NVYA A +W DVA R+ ++ R M + PGC L++
Sbjct: 437 VDTAVLAAERLVELEPDDVGNLVMLANVYAAARRWSDVASTRKAIRSRSMRKTPGCSLIE 496
Query: 474 LKEVVEKLKVG 484
+ VV + G
Sbjct: 497 VGNVVREFVAG 507
Score = 41.2 bits (95), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 34/137 (24%), Positives = 61/137 (44%), Gaps = 6/137 (4%)
Query: 218 NDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVF 277
D MA L AC F + VHG+ VR + + L T ++ L + ++V A RVF
Sbjct: 14 EDAVMAR-LRAC---VTFRDLLRVHGHVVRLRISQSSYLATQIVHLCNAHRRVTHAARVF 69
Query: 278 DSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVA--GGSISPDEITFIGVICAC 335
+ D NL NAMI + + + + + ++ ++ + G D T+ ++ AC
Sbjct: 70 AQVRDPNLHLHNAMIKAYAQNHQHRDAVAVYIRMLRCPTSPPDGHAGGDRFTYPFLLKAC 129
Query: 336 VRAELLTEGRKYFRQMI 352
L G++ ++
Sbjct: 130 GGTAALELGKQVHTHVV 146
>gi|15240355|ref|NP_200988.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75171532|sp|Q9FLS9.1|PP441_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g61800
gi|10176873|dbj|BAB10080.1| unnamed protein product [Arabidopsis thaliana]
gi|332010136|gb|AED97519.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 499
Score = 284 bits (726), Expect = 8e-74, Method: Compositional matrix adjust.
Identities = 158/478 (33%), Positives = 256/478 (53%), Gaps = 24/478 (5%)
Query: 1 MKQLLQIQAHLITSGLF---------FNNSFWTINLLKHSADFGSP--DYTVLVFKCINN 49
+K L Q A ITSG F N + I + SA Y VF+ I N
Sbjct: 17 LKHLHQFHAQFITSGRISNDFKQNSVFANVLFAITSISPSASASKEVVSYATSVFRFITN 76
Query: 50 PGTFCVNAVIKA---YSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCA--KTGCVE 104
P TFC N +I+ + S + + F+++M + P+ +TF +F +CA K G +
Sbjct: 77 PSTFCFNTIIRICTLHEPSSLSSKR--FFVEMRRRSVPPDFHTFPFVFKACAAKKNGDLT 134
Query: 105 RGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHV 164
H AL+ G+ +L +N+LI +Y +D A +F + RD++++N ++ G V
Sbjct: 135 LVKTLHCQALRFGLLSDLFTLNTLIRVYSLIAPIDSALQLFDENPQRDVVTYNVLIDGLV 194
Query: 165 RSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMAS 224
++ ++ A ELFD MP R++VSWN +ISGY++ + ++KLF EM+ G + ++ + S
Sbjct: 195 KAREIVRARELFDSMPLRDLVSWNSLISGYAQMNHCREAIKLFDEMVALGLKPDNVAIVS 254
Query: 225 VLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRN 284
L+AC +S + +G+++H YT R L + L T L+D Y+KC ++ A +F+ +D+
Sbjct: 255 TLSACAQSGDWQKGKAIHDYTKRKRLFIDSFLATGLVDFYAKCGFIDTAMEIFELCSDKT 314
Query: 285 LVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEG 344
L WNAMI G +HG E + F +V+ I PD +TFI V+ C + L+ E
Sbjct: 315 LFTWNAMITGLAMHGNGELTVDYFRKMVS-----SGIKPDGVTFISVLVGCSHSGLVDEA 369
Query: 345 RKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSL 404
R F QM Y + HY CMA+L A L EEA E++ +MP+D N + + W L
Sbjct: 370 RNLFDQMRSLYDVNREMKHYGCMADLLGRAGLIEEAAEMIEQMPKDGGNRE-KLLAWSGL 428
Query: 405 LSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRR 462
L CR G + + E+ A + P+D Y+ ++ +YA A +WE+V +VRE++ + +
Sbjct: 429 LGGCRIHGNIEIAEKAANRVKALSPEDGGVYKVMVEMYANAERWEEVVKVREIIDRDK 486
>gi|326519957|dbj|BAK03903.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 598
Score = 284 bits (726), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 154/504 (30%), Positives = 266/504 (52%), Gaps = 46/504 (9%)
Query: 2 KQLLQIQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKA 61
+ + +IQA L+TSGL L+ SA+ +A+I+A
Sbjct: 34 RPIARIQAALVTSGL-----------LRRSAELH--------------------DALIRA 62
Query: 62 YSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKT----GCVERGGMCHGLALKNG 117
+++S P + Y +I+ G P +T SL S A + G H A++ G
Sbjct: 63 HASSGRPQAALPLYAHLIRAGLFPTPHTLPSLLKSLALSPAVPGARRLALAVHAHAVRLG 122
Query: 118 VDFELPVMNSLINMY-GCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELF 176
+ L V N+LI ++ G G + A + + D ++N++++ H R+G ++ A LF
Sbjct: 123 LAGFLLVNNALIRVHAGLLGRLADAHLLLRTSAAVDASTFNTLITAHARAGRVADARSLF 182
Query: 177 DIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFN 236
D MPERN VSW+ M++GY ++G+ +L +F +M G R +D + VL AC +
Sbjct: 183 DEMPERNAVSWSAMVNGYVQAGDGREALGVFSQMQAQGVRPDDTVLVGVLAACAQLGALE 242
Query: 237 EGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHC 296
+G+ VHGY +++ + L TAL+D+Y+KC +V++ VF+ M D+N++ W MI G
Sbjct: 243 QGKWVHGYLKANNIRMTVFLGTALVDMYAKCGEVQLGMEVFEGMKDKNVLAWTTMIKGLA 302
Query: 297 IHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYK 356
+HG+ + + LF+ + + PD+I FIG +CAC L+ +GR+ F M++ Y
Sbjct: 303 MHGRGSDSLTLFSQM-----ESSGVKPDDIAFIGALCACTHTGLVDKGRELFNSMVNNYG 357
Query: 357 IKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAM 416
IKP HY CM +L A L EA +++ KMP M ++++W +L++ CRF V +
Sbjct: 358 IKPKIEHYGCMVDLLARNGLLSEARDMVEKMP-----MKPDALIWGALMAGCRFHKNVEL 412
Query: 417 VERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLKE 476
E + K +++++P Y L N+Y+ +G+ +R LM+++ + + PGC V++K
Sbjct: 413 AEYVIKHWIELEPDKSGAYVLLGNIYSASGRHASAREIRNLMREKGVEKTPGCSNVEIKG 472
Query: 477 VVEKLKVGHFWRGGMKEEVNKMME 500
V+ + VG +K+ + K E
Sbjct: 473 VIHQFIVGDLSHPRIKDILTKWYE 496
>gi|357483509|ref|XP_003612041.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355513376|gb|AES94999.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 518
Score = 284 bits (726), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 146/483 (30%), Positives = 256/483 (53%), Gaps = 11/483 (2%)
Query: 3 QLLQIQAHLITSGLFFNNSFWTINLLKH-SADFGSPDYTVLVFKCINNPGTFCVNAVIKA 61
+L QI L+ G + + L + S +F + Y +VF I++P T N +I+A
Sbjct: 26 ELKQIHGQLLKKGTIRHKLTVSRLLTTYASMEFSNLTYARMVFDRISSPNTVMWNTMIRA 85
Query: 62 YSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFE 121
YSNS P++ ++ Y QM+ + N+YTF L +C+ + H +K G E
Sbjct: 86 YSNSNDPEEALLLYHQMLHHSIPHNAYTFPFLLKACSALSALAETHQIHVQIIKRGFGSE 145
Query: 122 LPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPE 181
+ NSL+ +Y G++ A +F + RD++SWN+++ G+++ G++ A+++F MPE
Sbjct: 146 VYATNSLLRVYAISGSIKSAHVLFDLLPSRDIVSWNTMIDGYIKCGNVEMAYKIFQAMPE 205
Query: 182 RNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSV 241
+NV+SW MI G+ ++G +L L ++M+ +G + + T++ L+AC +G+ +
Sbjct: 206 KNVISWTSMIVGFVRTGMHKEALCLLQQMLVAGIKPDKITLSCSLSACAGLGALEQGKWI 265
Query: 242 HGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKP 301
H Y + +K + +L ALID+Y KC +++ A VF + + + W A+I G +HGK
Sbjct: 266 HTYIGKNKIKIDPVLGCALIDMYVKCGEMKKALLVFSKLEKKCVYTWTAIIGGFAVHGKG 325
Query: 302 EEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNF 361
E + FT + I P TF V+ AC L+ EG+ F M FY +KP
Sbjct: 326 SEALDWFTQMQK-----AGIKPTSFTFTAVLTACSHTGLVEEGKSLFESMSTFYNMKPVM 380
Query: 362 AHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLA 421
HY CM +L A +EA+E + MP + + +W SLL+ C + + + +
Sbjct: 381 EHYGCMVDLLGRAGFLKEAKEFVESMP-----IKPNAAIWGSLLNACHLHKHLELGKEIG 435
Query: 422 KSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLKEVVEKL 481
K +++DP+ RY L +++A AG+W++ ++VR +K + + +PGC + L V +
Sbjct: 436 KFLIELDPEHDGRYIHLASIHAAAGEWDEASQVRSHIKNKGLLNLPGCSTITLNGVAHEF 495
Query: 482 KVG 484
G
Sbjct: 496 FAG 498
>gi|297800176|ref|XP_002867972.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297313808|gb|EFH44231.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 535
Score = 283 bits (725), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 170/525 (32%), Positives = 273/525 (52%), Gaps = 49/525 (9%)
Query: 2 KQLLQIQ---AHLITSGLFFNNSFWTINLLKHSADFGSP---DYTVLVFKCINNPGTFCV 55
K LL+IQ A ++ +GLF +++F L+ +A P Y + I +P F
Sbjct: 20 KSLLEIQQAHAFMLKTGLF-HDTFSASKLVAFAATNPEPKTVSYAHSILNRIESPNGFTH 78
Query: 56 NAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALK 115
N+VI+AY+NS P+ + + +M+ P+ Y+F + +CA E G HGL +K
Sbjct: 79 NSVIRAYANSSTPEIALTVFREMLLGPVFPDKYSFTFVLKACAAFCGFEEGRQIHGLFMK 138
Query: 116 NGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHEL 175
+ + ++ V N+LIN+YG G + AR + +M RD +SWNS++S ++ G + A L
Sbjct: 139 SDLVTDVFVENTLINVYGRSGYFEIARKVLDRMPVRDAVSWNSLLSAYLDKGLVEEARAL 198
Query: 176 FDIMPERNVVSWNIMISGYSKSG----------------------------NPGCS---L 204
FD M ERNV SWN MISGY+ +G + GC L
Sbjct: 199 FDEMEERNVESWNFMISGYAAAGLVKEAREVFDSMPVKDVVSWNAMVTAYAHVGCYNEVL 258
Query: 205 KLFREMMK-SGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDL 263
++F M+ S R + T+ +VL+AC ++G VH Y + ++ + TAL+D+
Sbjct: 259 EVFNMMLDDSAERPDGFTLVNVLSACASLGSLSQGEWVHVYIDKHGIEIEGFVATALVDM 318
Query: 264 YSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISP 323
YSKC K++ A VF + R++ WN++I G +HG ++ +++F+ +V P
Sbjct: 319 YSKCGKIDKALEVFRDTSKRDVSTWNSIITGLSVHGLGKDALEIFSEMVY-----EGFKP 373
Query: 324 DEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEI 383
+ ITFIGV+ AC LL + RK F M Y I+P HY CM +L EEAEE+
Sbjct: 374 NGITFIGVLSACNHVGLLDQARKLFEMMNSVYGIEPTIEHYGCMVDLLGRMGKFEEAEEL 433
Query: 384 LRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYA 443
+ ++P D SI+ SLL C+ G + ER+A ++ +P++ S Y + N+YA
Sbjct: 434 VNEVPADE-----ASILLESLLGACKRFGKLEQAERIANRLLESNPRESSGYVQMSNLYA 488
Query: 444 VAGQWEDVARVRELMKKRRMGRMPGCRLVDLKEVVEKLKVGHFWR 488
G+W++ VR M+ R+ + PGC ++++ VV + G R
Sbjct: 489 SHGRWDEAMEVRGKMRAERVKKNPGCSMIEVDGVVHEFLAGEGLR 533
>gi|356528966|ref|XP_003533068.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g15930-like [Glycine max]
Length = 712
Score = 283 bits (725), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 155/429 (36%), Positives = 237/429 (55%), Gaps = 10/429 (2%)
Query: 56 NAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALK 115
N ++ Y+ + + +++M K G PNS T V + +C+K +E G +
Sbjct: 177 NIMLSGYNRVKQFKKSKMLFIEMEKRGVSPNSVTLVLMLSACSKLKDLEGGKHIYKYING 236
Query: 116 NGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHEL 175
V+ L + N LI+M+ G MD A+++F M RD+ISW SIV+G G + A +
Sbjct: 237 GIVERNLILENVLIDMFAACGEMDEAQSVFDNMKNRDVISWTSIVTGFANIGQIDLARKY 296
Query: 176 FDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARF 235
FD +PER+ VSW MI GY + +L LFREM S + ++ TM S+LTAC
Sbjct: 297 FDQIPERDYVSWTAMIDGYLRMNRFIEALALFREMQMSNVKPDEFTMVSILTACAHLGAL 356
Query: 236 NEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGH 295
G V Y + S+K + + ALID+Y KC V A++VF M ++ W AMI+G
Sbjct: 357 ELGEWVKTYIDKNSIKNDTFVGNALIDMYFKCGNVGKAKKVFKEMHHKDKFTWTAMIVGL 416
Query: 296 CIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFY 355
I+G EE + +F+ ++ SI+PDEIT+IGV+CAC A ++ +G+ +F M +
Sbjct: 417 AINGHGEEALAMFSNMIE-----ASITPDEITYIGVLCACTHAGMVEKGQSFFISMTMQH 471
Query: 356 KIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVA 415
IKPN HY CM +L A EEA E++ MP + SI+W SLL CR V
Sbjct: 472 GIKPNVTHYGCMVDLLGRAGRLEEAHEVIVNMPVKPN-----SIVWGSLLGACRVHKNVQ 526
Query: 416 MVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLK 475
+ E AK ++++P++ + Y L N+YA +WE++ +VR+LM +R + + PGC L++L
Sbjct: 527 LAEMAAKQILELEPENGAVYVLLCNIYAACKRWENLRQVRKLMMERGIKKTPGCSLMELN 586
Query: 476 EVVEKLKVG 484
V + G
Sbjct: 587 GNVYEFVAG 595
Score = 140 bits (354), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 124/515 (24%), Positives = 216/515 (41%), Gaps = 96/515 (18%)
Query: 1 MKQLLQIQAHLITSGLFFNNSFWT-INLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVI 59
M QL QI +H I GL + F + + + G Y VF I P F N +I
Sbjct: 20 MYQLKQIHSHTIKMGLSSDPLFQKRVIAFCCAHESGKMIYARQVFDAIPQPTLFIWNTMI 79
Query: 60 KAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVD 119
K YS P GV YL M+ + P+ +TF L + ++ G + A+K+G D
Sbjct: 80 KGYSRINHPQNGVSMYLLMLASNIKPDRFTFPFLLKGFTRNMALQYGKVLLNHAVKHGFD 139
Query: 120 FELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIM 179
L V + I+M+ +D AR +F DM A E
Sbjct: 140 SNLFVQKAFIHMFSLCRLVDLARKVF----------------------DMGDAWE----- 172
Query: 180 PERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGR 239
VV+WNIM+SGY++ S LF EM K G N T+ +L+AC + G+
Sbjct: 173 ----VVTWNIMLSGYNRVKQFKKSKMLFIEMEKRGVSPNSVTLVLMLSACSKLKDLEGGK 228
Query: 240 SVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHG 299
++ Y ++ N+IL+ LID+++ C +++ AQ VFD+M +R+++ W +++ G G
Sbjct: 229 HIYKYINGGIVERNLILENVLIDMFAACGEMDEAQSVFDNMKNRDVISWTSIVTGFANIG 288
Query: 300 K-----------PEEGIKLFTALVNG---------------TVAGGSISPDEITFIGVIC 333
+ PE +TA+++G + ++ PDE T + ++
Sbjct: 289 QIDLARKYFDQIPERDYVSWTAMIDGYLRMNRFIEALALFREMQMSNVKPDEFTMVSILT 348
Query: 334 ACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDND- 392
AC L G ++ + ID IK + + ++Y +A+++ ++M +
Sbjct: 349 ACAHLGALELG-EWVKTYIDKNSIKNDTFVGNALIDMYFKCGNVGKAKKVFKEMHHKDKF 407
Query: 393 ----------------------------NMSFESIMWVSLLSLCRFQGAVAMVERLAKSF 424
+++ + I ++ +L C G MVE+ F
Sbjct: 408 TWTAMIVGLAINGHGEEALAMFSNMIEASITPDEITYIGVLCACTHAG---MVEKGQSFF 464
Query: 425 VDMDPQ-----DFSRYQFLLNVYAVAGQWEDVARV 454
+ M Q + + Y ++++ AG+ E+ V
Sbjct: 465 ISMTMQHGIKPNVTHYGCMVDLLGRAGRLEEAHEV 499
Score = 44.3 bits (103), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 32/150 (21%), Positives = 72/150 (48%), Gaps = 8/150 (5%)
Query: 43 VFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGC 102
VFK +++ F A+I + + ++ + + MI+ P+ T++ + +C G
Sbjct: 397 VFKEMHHKDKFTWTAMIVGLAINGHGEEALAMFSNMIEASITPDEITYIGVLCACTHAGM 456
Query: 103 VERG-GMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPR-DLISWNSI- 159
VE+G + +++G+ + ++++ G G ++ A + V M + + I W S+
Sbjct: 457 VEKGQSFFISMTMQHGIKPNVTHYGCMVDLLGRAGRLEEAHEVIVNMPVKPNSIVWGSLL 516
Query: 160 ----VSGHVRSGDMSAAHELFDIMPERNVV 185
V +V+ +M AA ++ ++ PE V
Sbjct: 517 GACRVHKNVQLAEM-AAKQILELEPENGAV 545
>gi|449443909|ref|XP_004139718.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g48910-like [Cucumis sativus]
Length = 642
Score = 283 bits (724), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 158/504 (31%), Positives = 275/504 (54%), Gaps = 34/504 (6%)
Query: 2 KQLLQIQAHLITSGLFFNNSFWTINLLKHSADFGSPD--YTVLVFKCINNPGTFCVNAVI 59
+ L Q+ A I +G + ++K A F S D Y VF+ + P FC N ++
Sbjct: 33 RDLKQLHAIFIKTGQI-QDPLTAAEVIKFCA-FSSRDIDYARAVFRQMPEPNCFCWNTIL 90
Query: 60 KAYS---NSCVPDQGVVFYLQMIKNGFM-PNSYTFVSLFGSCAKTGCVERGGMCHGLALK 115
+ + + + + ++ + M+ +G + PN +TF S+ +CA+ + G HGL +K
Sbjct: 91 RVLAETNDEHLQSEALMLFSAMLCDGRVKPNRFTFPSVLKACARASRLREGKQIHGLIVK 150
Query: 116 NGVDFELPVMNSLINMYGCFGAMDCARNMF------------VQMSPR----DLISWNSI 159
G + V+++L+ MY M+ A ++F +++ R +++ WN +
Sbjct: 151 FGFHEDEFVISNLVRMYVMCAVMEDAYSLFCKNVVDFDGSCQMELDKRKQDGNVVLWNIM 210
Query: 160 VSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGND 219
+ G VR GD+ +A LFD MP+R+VVSWN+MISGY+++G+ ++ LF+EM S N
Sbjct: 211 IDGQVRLGDIKSAKNLFDEMPQRSVVSWNVMISGYAQNGHFIEAINLFQEMQSSNIDPNY 270
Query: 220 KTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDS 279
T+ SVL A R G+ +H Y + ++ + +L +AL+D+YSKC ++ A +VF++
Sbjct: 271 VTLVSVLPAIARIGALELGKWIHLYAGKNKIEIDDVLGSALVDMYSKCGSIDEALQVFET 330
Query: 280 MADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAE 339
+ RN + W+A+I +HG+ E+ I F + ++P+++ +IG++ AC A
Sbjct: 331 LPKRNAITWSAIIGAFAMHGRAEDAIIHFHLM-----GKAGVTPNDVAYIGILSACSHAG 385
Query: 340 LLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESI 399
L+ EGR +F M+ ++P HY CM +L A EEAEE++R MP + D+ +
Sbjct: 386 LVEEGRSFFSHMVKVVGLQPRIEHYGCMVDLLGRAGHLEEAEELIRNMPIEPDD-----V 440
Query: 400 MWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMK 459
+W +LL C+ + M ER+A++ +++ P D Y L N+YA G WE VARVR MK
Sbjct: 441 IWKALLGACKMHKNLKMGERVAETLMELAPHDSGSYVALSNLYASLGNWEAVARVRLKMK 500
Query: 460 KRRMGRMPGCRLVDLKEVVEKLKV 483
+ + PGC +++ ++ + V
Sbjct: 501 GMDIRKDPGCSWIEIHGIIHEFLV 524
>gi|15235537|ref|NP_195454.1| Tetratricopeptide repeat (TPR)-like superfamily protein
[Arabidopsis thaliana]
gi|75213666|sp|Q9SZT8.1|PP354_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At4g37380, chloroplastic; Flags: Precursor
gi|4468804|emb|CAB38205.1| putative protein [Arabidopsis thaliana]
gi|7270720|emb|CAB80403.1| putative protein [Arabidopsis thaliana]
gi|332661386|gb|AEE86786.1| Tetratricopeptide repeat (TPR)-like superfamily protein
[Arabidopsis thaliana]
Length = 632
Score = 283 bits (724), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 154/496 (31%), Positives = 268/496 (54%), Gaps = 16/496 (3%)
Query: 1 MKQLLQIQAHLITSGLFFNNSFWTINLLKHSA--DFGSPDYTVLVFKCINNPGTFCVNAV 58
+ ++LQI A ++ L + + +NL H A G +++ +F +P F A
Sbjct: 42 VDEVLQIHAAILRHNLLLHPRYPVLNLKLHRAYASHGKIRHSLALFHQTIDPDLFLFTAA 101
Query: 59 IKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGV 118
I S + + DQ + Y+Q++ + PN +TF SL SC+ + G + H LK G+
Sbjct: 102 INTASINGLKDQAFLLYVQLLSSEINPNEFTFSSLLKSCS----TKSGKLIHTHVLKFGL 157
Query: 119 DFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDI 178
+ V L+++Y G + A+ +F +M R L+S ++++ + + G++ AA LFD
Sbjct: 158 GIDPYVATGLVDVYAKGGDVVSAQKVFDRMPERSLVSSTAMITCYAKQGNVEAARALFDS 217
Query: 179 MPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDK-TMASVLTACGRSARFNE 237
M ER++VSWN+MI GY++ G P +L LF++++ G D+ T+ + L+AC +
Sbjct: 218 MCERDIVSWNVMIDGYAQHGFPNDALMLFQKLLAEGKPKPDEITVVAALSACSQIGALET 277
Query: 238 GRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCI 297
GR +H + + ++ N+ + T LID+YSKC +E A VF+ +++V WNAMI G+ +
Sbjct: 278 GRWIHVFVKSSRIRLNVKVCTGLIDMYSKCGSLEEAVLVFNDTPRKDIVAWNAMIAGYAM 337
Query: 298 HGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKI 357
HG ++ ++LF + T + P +ITFIG + AC A L+ EG + F M Y I
Sbjct: 338 HGYSQDALRLFNEMQGIT----GLQPTDITFIGTLQACAHAGLVNEGIRIFESMGQEYGI 393
Query: 358 KPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMV 417
KP HY C+ +L A + A E ++ M NM +S++W S+L C+ G +
Sbjct: 394 KPKIEHYGCLVSLLGRAGQLKRAYETIKNM-----NMDADSVLWSSVLGSCKLHGDFVLG 448
Query: 418 ERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLKEV 477
+ +A+ + ++ ++ Y L N+YA G +E VA+VR LMK++ + + PG ++++
Sbjct: 449 KEIAEYLIGLNIKNSGIYVLLSNIYASVGDYEGVAKVRNLMKEKGIVKEPGISTIEIENK 508
Query: 478 VEKLKVGHFWRGGMKE 493
V + + G KE
Sbjct: 509 VHEFRAGDREHSKSKE 524
>gi|224106277|ref|XP_002314110.1| predicted protein [Populus trichocarpa]
gi|222850518|gb|EEE88065.1| predicted protein [Populus trichocarpa]
Length = 738
Score = 283 bits (723), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 151/472 (31%), Positives = 250/472 (52%), Gaps = 16/472 (3%)
Query: 14 SGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSNSCVPDQGVV 73
S LF +NS L+ + G D LVF I N++I + P++ +
Sbjct: 164 SDLFISNS-----LIHFYSSLGDLDSAYLVFSKIVEKDIVSWNSMISGFVQGGSPEEALQ 218
Query: 74 FYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYG 133
+ +M PN T V + +CAK +E G +NG+D L + N++++MY
Sbjct: 219 LFKRMKMENARPNRVTMVGVLSACAKRIDLEFGRWACDYIERNGIDINLILSNAMLDMYV 278
Query: 134 CFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISG 193
G+++ AR +F +M +D++SW +++ G+ + GD AA +FD+MP ++ +WN +IS
Sbjct: 279 KCGSLEDARRLFDKMEEKDIVSWTTMIDGYAKVGDYDAARRVFDVMPREDITAWNALISS 338
Query: 194 YSKSGNPGCSLKLFREM-MKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKP 252
Y ++G P +L +FRE+ + + N+ T+AS L AC + + G +H Y + +K
Sbjct: 339 YQQNGKPKEALAIFRELQLNKNTKPNEVTLASTLAACAQLGAMDLGGWIHVYIKKQGIKL 398
Query: 253 NIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALV 312
N + T+LID+YSKC +E A VF S+ R++ W+AMI G +HG I LF+ +
Sbjct: 399 NFHITTSLIDMYSKCGHLEKALEVFYSVERRDVFVWSAMIAGLAMHGHGRAAIDLFSKMQ 458
Query: 313 NGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYA 372
V P+ +TF ++CAC + L+ EGR +F QM Y + P HY CM ++
Sbjct: 459 ETKV-----KPNAVTFTNLLCACSHSGLVDEGRLFFNQMRPVYGVVPGSKHYACMVDILG 513
Query: 373 GAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDF 432
A EEA E++ KMP + + +W +LL CR G V + E ++ D +
Sbjct: 514 RAGCLEEAVELIEKMP-----IVPSASVWGALLGACRIYGNVELAEMACSRLLETDSNNH 568
Query: 433 SRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLKEVVEKLKVG 484
Y L N+YA AG+W+ V+R+R+ MK + + PGC +++ ++ + VG
Sbjct: 569 GAYVLLSNIYAKAGKWDCVSRLRQHMKVSGLEKEPGCSSIEVNGIIHEFLVG 620
Score = 165 bits (418), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 115/414 (27%), Positives = 188/414 (45%), Gaps = 65/414 (15%)
Query: 2 KQLLQIQAHLITSGLFFNNSFWTINLLKHSADFGSP---DYTVLVFKCINNPGTFCVNAV 58
K L Q+ AH++ +GLFF+ T L + SP DY VF I P + N +
Sbjct: 44 KHLKQLHAHMLRTGLFFDPPSAT--KLFTACALSSPSSLDYACKVFDQIPRPNLYTWNTL 101
Query: 59 IKAYSNSCVPDQGVVFYLQMI-KNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNG 117
I+A+++S P QG++ ++QM+ ++ PNSYTF + + + + G HG+ +K
Sbjct: 102 IRAFASSPKPIQGLLVFIQMLHESQRFPNSYTFPFVIKAATEVSSLLAGQAIHGMVMKAS 161
Query: 118 VDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFD 177
+L + NSLI+ Y G +D A +F ++ +D++SWNS++SG V
Sbjct: 162 FGSDLFISNSLIHFYSSLGDLDSAYLVFSKIVEKDIVSWNSMISGFV------------- 208
Query: 178 IMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNE 237
+ G+P +L+LF+ M R N TM VL+AC +
Sbjct: 209 ------------------QGGSPEEALQLFKRMKMENARPNRVTMVGVLSACAKRIDLEF 250
Query: 238 GRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCI 297
GR Y R + N+IL A++D+Y KC +E A+R+FD M ++++V W MI G+
Sbjct: 251 GRWACDYIERNGIDINLILSNAMLDMYVKCGSLEDARRLFDKMEEKDIVSWTTMIDGYAK 310
Query: 298 HGK-----------PEEGIKLFTALVNGTVAGG----------------SISPDEITFIG 330
G P E I + AL++ G + P+E+T
Sbjct: 311 VGDYDAARRVFDVMPREDITAWNALISSYQQNGKPKEALAIFRELQLNKNTKPNEVTLAS 370
Query: 331 VICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEIL 384
+ AC + + G + I IK NF + ++Y+ E+A E+
Sbjct: 371 TLAACAQLGAMDLG-GWIHVYIKKQGIKLNFHITTSLIDMYSKCGHLEKALEVF 423
Score = 99.0 bits (245), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 77/292 (26%), Positives = 133/292 (45%), Gaps = 25/292 (8%)
Query: 172 AHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFR-GNDKTMASVLTACG 230
A ++FD +P N+ +WN +I ++ S P L +F +M+ R N T V+ A
Sbjct: 83 ACKVFDQIPRPNLYTWNTLIRAFASSPKPIQGLLVFIQMLHESQRFPNSYTFPFVIKAAT 142
Query: 231 RSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNA 290
+ G+++HG ++ S ++ + +LI YS ++ A VF + ++++V WN+
Sbjct: 143 EVSSLLAGQAIHGMVMKASFGSDLFISNSLIHFYSSLGDLDSAYLVFSKIVEKDIVSWNS 202
Query: 291 MILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGR---KY 347
MI G G PEE ++LF + + P+ +T +GV+ AC + L GR Y
Sbjct: 203 MISGFVQGGSPEEALQLFKRM-----KMENARPNRVTMVGVLSACAKRIDLEFGRWACDY 257
Query: 348 F-RQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLS 406
R ID I N M ++Y E+A + KM E + + W +++
Sbjct: 258 IERNGIDINLILSN-----AMLDMYVKCGSLEDARRLFDKMEEK------DIVSWTTMID 306
Query: 407 LCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQ-WEDVARVREL 457
G R+ F M +D + + L++ Y G+ E +A REL
Sbjct: 307 GYAKVGDYDAARRV---FDVMPREDITAWNALISSYQQNGKPKEALAIFREL 355
>gi|147799543|emb|CAN68467.1| hypothetical protein VITISV_029899 [Vitis vinifera]
Length = 613
Score = 283 bits (723), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 162/478 (33%), Positives = 269/478 (56%), Gaps = 29/478 (6%)
Query: 1 MKQLLQIQAHLITSGLFFNNSFWTINLLKHSA--DFGSPDYTVLVFKCINNPGTFCVNAV 58
M+ L Q+ A +I + + LL+ SA D DY +F+ ++ P F N +
Sbjct: 1 MQDLKQLHAQMIKTAQI-RDPLAAAELLRFSAVSDHRDLDYARKIFRSMHRPNCFSYNTL 59
Query: 59 IKAYSNSCVPDQGVVFYLQMIKN-GFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNG 117
I+A S S P ++ +++M+++ PN +TF S+F +C + + G HGLA+K G
Sbjct: 60 IRALSESNDPCDALLVFIEMVEDCSVEPNCFTFPSVFKACGRAERLREGRQVHGLAVKFG 119
Query: 118 VDFELPVMNSLINMYGCFGAMDCARNMF-----------VQMSPR----DLISWNSIVSG 162
+D + V+++++ MY G M+ A +F ++ R D++ WN ++ G
Sbjct: 120 LDSDEFVVSNVVRMYLSCGVMEDAHRLFYRRVFVDGCDGIRDKKRRVDGDVVLWNVMIDG 179
Query: 163 HVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTM 222
+VR G++ A LFD MP+R+VVSWN+MI+GY++SG+ ++++FREM + N T+
Sbjct: 180 YVRIGELEVARNLFDEMPQRSVVSWNVMIAGYAQSGHFKEAVEVFREMQMAEVPPNYVTL 239
Query: 223 ASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMAD 282
SVL A R G+ VH Y VR ++ + +L +ALID+Y+KC +E A +VF+ +
Sbjct: 240 VSVLPAMSRLGALELGKWVHLYAVRNNIGVDDVLGSALIDMYAKCGSIEKALQVFEGLPK 299
Query: 283 RNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLT 342
RN+V W+ +I G +HG+ ++ + F + V P ++T+IG++ AC A L+
Sbjct: 300 RNVVTWSTIIAGLAMHGRAKDTLDHFEDMERAGVM-----PSDVTYIGLLSACSHAGLVN 354
Query: 343 EGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWV 402
EGR +F M+ ++P HY CM +L A L EE+EE++ MP D+ ++W
Sbjct: 355 EGRWFFDHMVRVSGLEPRIEHYGCMVDLLGRAGLLEESEELILNMPIKPDD-----VIWK 409
Query: 403 SLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKK 460
+LL C+ G V M +R+A+ +++ P D Y L N+YA G WE VA+VR +MK+
Sbjct: 410 ALLGACKMHGNVEMGKRVAEHLMELAPHDSGSYVALSNIYASLGNWEGVAKVRLMMKE 467
>gi|224141809|ref|XP_002324255.1| predicted protein [Populus trichocarpa]
gi|222865689|gb|EEF02820.1| predicted protein [Populus trichocarpa]
Length = 547
Score = 282 bits (722), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 161/488 (32%), Positives = 257/488 (52%), Gaps = 22/488 (4%)
Query: 3 QLLQIQAHLITSGLFFNNSFWT--INLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIK 60
+L I AH+I L ++ T +++ + D G Y L+FK + P + NA+I+
Sbjct: 29 ELKSIHAHVIKYSLSQSSFLVTKMVDVCDKTEDLG---YASLLFKQVKEPNGYLYNAMIR 85
Query: 61 AYSNSCVPDQGVVFYLQMIK-------NGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLA 113
A++++ V ++FY +M++ N P+ +TF + SC+ C G H
Sbjct: 86 AHTHNKVYALAILFYKEMLRLKDPESENPIFPDRFTFPFVIKSCSGLVCYNLGKQVHAHL 145
Query: 114 LKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAH 173
K G + + N+LI+MY ++ A +F M RD ISWNSI+SGHV G M A
Sbjct: 146 CKFGPKSNITMENALIDMYTKCASLLDAHKVFDGMVERDAISWNSIISGHVGVGQMRKAG 205
Query: 174 ELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSA 233
LFD+MP R +VSW MISGY++ G+ +L +FR+M G ++ ++ SVL AC +
Sbjct: 206 ALFDLMPYRTIVSWTAMISGYTRLGSYADALYVFRQMQIVGVEPDEISIISVLPACAQLG 265
Query: 234 RFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMIL 293
G+ +H Y R L + AL+++YSKC + A ++FD M+ +++ W+ MI
Sbjct: 266 ALEVGKWIHMYCDRNGLLRKTSICNALMEMYSKCGCIGQAYQLFDQMSKGDVISWSTMIG 325
Query: 294 GHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMID 353
G HGK E I+LF + I P+ ITF+G++ AC A EG YF M
Sbjct: 326 GLANHGKAREAIELFKRM-----KKAKIEPNGITFLGLLSACAHAGFWNEGLAYFDSMSK 380
Query: 354 FYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGA 413
Y I+P HY C+ ++ A +A +++ KMP M +S +W SLLS CR
Sbjct: 381 DYHIEPEVEHYGCLVDILGRAGRLSQALDVIEKMP-----MKPDSKIWGSLLSSCRTHSN 435
Query: 414 VAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVD 473
+ + + +++P D Y L N+YA +W+ V+R+R+L+K + M + PG L+D
Sbjct: 436 LDIAIIAMEHLEELEPDDTGNYVLLSNIYADLAKWDGVSRMRKLIKSKSMKKTPGSSLID 495
Query: 474 LKEVVEKL 481
+ VV++
Sbjct: 496 INNVVQEF 503
>gi|359485688|ref|XP_002275048.2| PREDICTED: pentatricopeptide repeat-containing protein
At3g29230-like [Vitis vinifera]
gi|297739328|emb|CBI28979.3| unnamed protein product [Vitis vinifera]
Length = 585
Score = 282 bits (721), Expect = 4e-73, Method: Compositional matrix adjust.
Identities = 163/547 (29%), Positives = 278/547 (50%), Gaps = 75/547 (13%)
Query: 3 QLLQIQAHLITSGLFFNNSFWTINLLKHSADFG-SPDYTVLVFKCINNPGTFCVNAVIKA 61
Q+LQI A LIT+ L +++F LL + +Y LVF I+ P +F N ++K
Sbjct: 26 QILQIHAQLITTNLI-SDTFAASRLLDSVVSKTLNVNYAELVFAQIHQPNSFICNTMVKC 84
Query: 62 YSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFE 121
Y+ S P++ + FY +M + G + ++YT+ + +C + GG+ G A+K G +
Sbjct: 85 YTESSTPERALRFYAEMRRKGLLGDNYTYPFVLKACGAMCGLLEGGLVQGEAVKRGFGGD 144
Query: 122 LPVM-------------------------------NSLINMYGCFGAMDCARNMFVQMS- 149
+ V+ NS++ Y G M+ A+NMF +M
Sbjct: 145 VFVVNGLISMYCRCGETGWARAVFDGFSEKDLVSWNSMLGGYVWCGEMENAQNMFDEMPE 204
Query: 150 -------------------------------PRDLISWNSIVSGHVRSGDMSAAHELFDI 178
RDL+SWNS++ G+ + G+M A E+FD
Sbjct: 205 RDVVSWSIMIDGYGKKMGEVNRARVFFDSMPTRDLVSWNSMIDGYAKVGEMEVAREIFDK 264
Query: 179 MPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEG 238
M ++NV+SW+IMI GY++ + +L LFR+M+ G + + ++ ++AC + ++G
Sbjct: 265 MLQKNVISWSIMIDGYAQHRDSKEALNLFRQMLCQGIKPDRVSVVGAVSACSQLGALDQG 324
Query: 239 RSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIH 298
R +H Y R + +I++ TAL+D+Y KC + A+R+F+SM +RN+V WN MI+G ++
Sbjct: 325 RWIHLYMKRNRMLLDIVVQTALVDMYLKCGSRDEARRIFNSMPERNVVSWNVMIVGLGMN 384
Query: 299 GKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIK 358
G +E ++ FT + I D++ F+GV+ AC A L+TEG F QM Y+++
Sbjct: 385 GFGKEALECFTQM-----EMERIPMDDLLFLGVLMACSHANLVTEGLHIFNQMKGVYRLE 439
Query: 359 PNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVE 418
P HY C+ +L A ++ + I++ MP M + +W SLL CR V + E
Sbjct: 440 PKLEHYGCLVDLLGRAGQLDQIQNIIQSMP-----MKPNAALWGSLLLACRIHQNVTLAE 494
Query: 419 RLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLKEVV 478
+ + ++ D Y + N+YA G WE + R+R+LMK+R+M + G ++++ V
Sbjct: 495 IVVERLAELKADDSGVYVLMSNIYADVGMWEGMLRIRKLMKERKMKKDIGRSVIEVDGNV 554
Query: 479 EKLKVGH 485
E+ G
Sbjct: 555 EEFVSGE 561
>gi|359476090|ref|XP_003631788.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At2g20540-like [Vitis vinifera]
Length = 515
Score = 281 bits (720), Expect = 5e-73, Method: Compositional matrix adjust.
Identities = 154/489 (31%), Positives = 260/489 (53%), Gaps = 16/489 (3%)
Query: 1 MKQLLQIQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIK 60
M +L +I AH++ L +SF ++ G +Y L+FK + +P F NA+I+
Sbjct: 1 MVELKKIHAHVVKFSLS-XSSFLVTKMVDMCNHHGETEYANLLFKRVADPNAFLYNAMIR 59
Query: 61 AYSNSCVPDQGVVFYLQMI-----KNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALK 115
AY ++ V + + QM+ +N P+ +TF + CA C G HG A K
Sbjct: 60 AYKHNKVYILAITVHKQMLGHSHGENPXFPDKFTFPFVVKXCAGLMCYNLGKQVHGHAFK 119
Query: 116 NGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHEL 175
G + NSL+ MY ++D A +F +M+ RD +SWN+++SGHVR G M A +
Sbjct: 120 FGPKSNTVIENSLVEMYVKCDSLDDAHRVFEEMTERDAVSWNTLISGHVRLGQMRRARAI 179
Query: 176 FDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARF 235
F+ + ++ + SW ++SGY++ G +L+ FR M ++ ++ SVL AC +
Sbjct: 180 FEELQDKTIFSWTAIVSGYARIGCHAVALEFFRRMQMVDIELDEISLVSVLPACAQLGAL 239
Query: 236 NEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGH 295
G+ +H Y + +I + ALI++Y+K ++ +R+F M +R+++ W+ MI+G
Sbjct: 240 ELGKWIHIYADKAGFLRDICVCNALIEVYAKRGSMDEGRRLFHKMNERDVISWSTMIVGL 299
Query: 296 CIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFY 355
HG+ E I+LF + V P+ ITF+G++ AC A LL EG YF M
Sbjct: 300 ANHGRAREAIELFQEMQKAKV-----EPNIITFVGLLSACAHAGLLNEGLGYFESMERDD 354
Query: 356 KIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVA 415
I+P HY C+ NL + ++A E+++KMP M +S +W L S CR G +
Sbjct: 355 NIEPGVEHYGCLVNLLGLSGRLDQALELIKKMP-----MKPDSDIWGLLSSSCRSHGNLE 409
Query: 416 MVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLK 475
+V + ++++P D Y L N+YA G+W+ V+R+R+LM + M + PGC +++
Sbjct: 410 IVAIAMEHLLELEPDDTGNYITLSNLYADLGKWDGVSRMRKLMSSKYMNKTPGCSSIEVD 469
Query: 476 EVVEKLKVG 484
+V++ G
Sbjct: 470 NMVQEYASG 478
>gi|413947864|gb|AFW80513.1| hypothetical protein ZEAMMB73_142876 [Zea mays]
Length = 582
Score = 281 bits (720), Expect = 5e-73, Method: Compositional matrix adjust.
Identities = 147/450 (32%), Positives = 248/450 (55%), Gaps = 15/450 (3%)
Query: 56 NAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGM----CHG 111
+A+I+A S S P + Y +++ G +P +T SL S A + V + H
Sbjct: 41 DALIRALSRSARPHLALPLYAHLLRAGLLPTPHTLPSLLKSMALSPAVPGAAVLALTVHT 100
Query: 112 LALKNGVDFELPVMNSLINMYGCF-GAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMS 170
A+K G+D + V N+LI ++ F G++ + + D ++N++++ + R+G ++
Sbjct: 101 HAVKLGLDRFVLVSNALIRVHAGFLGSLADGLLLLRTAAAVDASTFNTLITAYARAGRLA 160
Query: 171 AAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACG 230
A LFD MP RN VSW+ M++GY ++G+ +L++F M R +D + VL AC
Sbjct: 161 DARALFDEMPARNAVSWSAMVNGYVQAGDGREALRIFARMQAEDVRPDDTVLVGVLAACA 220
Query: 231 RSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNA 290
+ +G+ VHGY +K N+ TAL+D+YSKC +V++A VF+ M +N++ W
Sbjct: 221 QHGALEQGKWVHGYLKAHGIKINLFFGTALVDMYSKCGEVQLAMDVFERMQYKNVLAWTT 280
Query: 291 MILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQ 350
MI G +HG+ E + LF + + I PD+I FIGV+CAC A L+ +GR+ F
Sbjct: 281 MIKGLAMHGRGSEAVMLFAQMES-----SGIRPDDIAFIGVLCACTHAGLVDKGRELFDS 335
Query: 351 MIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRF 410
M+ Y IKP HY CM +L A EA+E+++KMP + D +++W +L++ CRF
Sbjct: 336 MVRKYGIKPKIEHYGCMVDLLARNGFLYEAKEMIQKMPMEPD-----ALIWGALMAGCRF 390
Query: 411 QGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCR 470
V E +AK ++ ++P Y L N+YA +G+ +R LM+++ + + PGC
Sbjct: 391 HKNVEFAEYVAKHWILLEPDKSGAYVLLSNIYAASGRHASAREIRHLMREKGVDKTPGCS 450
Query: 471 LVDLKEVVEKLKVGHFWRGGMKEEVNKMME 500
V++ V+ + VG +K+ ++K E
Sbjct: 451 TVEVNGVIHQFIVGDLSHPRIKDILSKWYE 480
>gi|225442904|ref|XP_002264123.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g15930 [Vitis vinifera]
Length = 724
Score = 281 bits (719), Expect = 5e-73, Method: Compositional matrix adjust.
Identities = 161/495 (32%), Positives = 256/495 (51%), Gaps = 11/495 (2%)
Query: 6 QIQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSNS 65
++ H++ G F +N F L+ + G VF + N +I Y+ S
Sbjct: 140 ELHDHIVKLG-FSSNVFVQNALIHLYSLSGEVSVARGVFDRSSKGDVVTWNVMISGYNRS 198
Query: 66 CVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVM 125
D+ + + +M + +P+S T VS+ +C+K + G H ++ +
Sbjct: 199 KQFDESMKLFDEMERMRVLPSSITLVSVLSACSKLKDLNVGKRVHRYVKDLKIEPVRVLE 258
Query: 126 NSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVV 185
N+LI+MY G MD A +F M RD+ISW +IV+G G + A FD MPER+ V
Sbjct: 259 NALIDMYAACGDMDTALGIFDNMKSRDVISWTAIVTGFTNLGQVGLARNYFDKMPERDFV 318
Query: 186 SWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYT 245
SW MI GY + L LFREM + + ++ TM S+LTAC G + Y
Sbjct: 319 SWTAMIDGYLQVNRFKEVLSLFREMQAANIKPDEFTMVSILTACAHLGALELGEWIKAYI 378
Query: 246 VRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGI 305
+ +K + + ALID+Y C VE A R+F++M R+ + W A+I G I+G EE +
Sbjct: 379 DKNEIKIDSFVGNALIDMYFNCGNVEKAIRIFNAMPHRDKISWTAVIFGLAINGYGEEAL 438
Query: 306 KLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYW 365
+F+ ++ SI+PDE+T IGV+CAC + ++ +G+K+F +M + I+PN AHY
Sbjct: 439 DMFSQMLK-----ASITPDEVTCIGVLCACTHSGMVDKGKKFFARMTTQHGIEPNVAHYG 493
Query: 366 CMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFV 425
CM +L A +EA E+++ MP + SI+W SLL CR M E A+ +
Sbjct: 494 CMVDLLGRAGHLKEAHEVIKNMP-----VKPNSIVWGSLLGACRVHRDEEMAEMAAQQIL 548
Query: 426 DMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLKEVVEKLKVGH 485
+++P++ + Y L N+YA +WE + VR+LM R + + PGC L+++ V + G
Sbjct: 549 ELEPENGAVYVLLCNIYAACNRWEKLHEVRKLMMDRGIKKTPGCSLIEMNGSVHEFVAGD 608
Query: 486 FWRGGMKEEVNKMME 500
KE +K+ E
Sbjct: 609 QVHPQSKEIYSKLDE 623
Score = 164 bits (414), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 118/431 (27%), Positives = 197/431 (45%), Gaps = 66/431 (15%)
Query: 1 MKQLLQIQAHLITSGLFFNNSFWTINLL----KHSADFGSPDYTVLVFKCINNPGTFCVN 56
M QL QI + I +GL +N ++ KH + G +Y +VF + P F N
Sbjct: 32 MAQLKQIHSQTICTGLI-SNPIVPAQIIAFCCKH--ELGDMEYARMVFDTMPGPNHFVWN 88
Query: 57 AVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKN 116
+IK YS P+ V Y +M++ G MP+ YT+ L + V+ G H +K
Sbjct: 89 NMIKGYSRVGCPNSAVSMYCEMLERGVMPDEYTYPFLLKRFTRDTAVKCGRELHDHIVKL 148
Query: 117 GVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELF 176
G + V N+LI++Y SG++S A +F
Sbjct: 149 GFSSNVFVQNALIHLYSL-------------------------------SGEVSVARGVF 177
Query: 177 DIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFN 236
D + +VV+WN+MISGY++S S+KLF EM + + T+ SVL+AC + N
Sbjct: 178 DRSSKGDVVTWNVMISGYNRSKQFDESMKLFDEMERMRVLPSSITLVSVLSACSKLKDLN 237
Query: 237 EGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHC 296
G+ VH Y ++P +L+ ALID+Y+ C ++ A +FD+M R+++ W A++ G
Sbjct: 238 VGKRVHRYVKDLKIEPVRVLENALIDMYAACGDMDTALGIFDNMKSRDVISWTAIVTGFT 297
Query: 297 IHGK-----------PEEGIKLFTALVNG---------------TVAGGSISPDEITFIG 330
G+ PE +TA+++G + +I PDE T +
Sbjct: 298 NLGQVGLARNYFDKMPERDFVSWTAMIDGYLQVNRFKEVLSLFREMQAANIKPDEFTMVS 357
Query: 331 VICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPED 390
++ AC L G ++ + ID +IK + + ++Y E+A I MP
Sbjct: 358 ILTACAHLGALELG-EWIKAYIDKNEIKIDSFVGNALIDMYFNCGNVEKAIRIFNAMPH- 415
Query: 391 NDNMSFESIMW 401
D +S+ ++++
Sbjct: 416 RDKISWTAVIF 426
>gi|449475532|ref|XP_004154482.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g48910-like [Cucumis sativus]
Length = 642
Score = 281 bits (719), Expect = 6e-73, Method: Compositional matrix adjust.
Identities = 149/466 (31%), Positives = 259/466 (55%), Gaps = 30/466 (6%)
Query: 38 DYTVLVFKCINNPGTFCVNAVIKAYS---NSCVPDQGVVFYLQMIKNGFM-PNSYTFVSL 93
DY VF+ + P FC N +++ + + + + ++ + M+ +G + PN +TF S+
Sbjct: 69 DYARAVFRQMPEPNCFCWNTILRILAETNDEHLQSEALMLFSAMLCDGRVKPNRFTFPSV 128
Query: 94 FGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMF-------- 145
+CA+ + G HGL +K G + V+++L+ MY M+ A ++F
Sbjct: 129 LKACARASRLREGKQIHGLIVKFGFHEDEFVISNLVRMYVMCAVMEDAYSLFCKNVVDFD 188
Query: 146 ----VQMSPR----DLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKS 197
+++ R +++ WN ++ G VR GD+ +A LFD MP R+VVSWN+MISGY+++
Sbjct: 189 GSCQMELDKRKQDGNVVLWNIMIDGQVRLGDIKSAKNLFDEMPPRSVVSWNVMISGYAQN 248
Query: 198 GNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILD 257
G+ ++ LF+EM S N T+ SVL A R G+ +H Y + ++ + +L
Sbjct: 249 GHFIEAINLFQEMQSSNIDPNYVTLVSVLPAIARIGALELGKWIHLYAGKNKVEIDDVLG 308
Query: 258 TALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVA 317
+AL+D+YSKC ++ A +VF+++ RN + W+A+I +HG+ E+ I F +
Sbjct: 309 SALVDMYSKCGSIDKALQVFETLPKRNAITWSAIIGAFAMHGRAEDAIIHFHLM-----G 363
Query: 318 GGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELT 377
++P+++ +IG++ AC A L+ EGR +F M+ ++P HY CM +L A
Sbjct: 364 KAGVTPNDVAYIGILSACSHAGLVEEGRSFFSHMVKVVGLQPRIEHYGCMVDLLGRAGHL 423
Query: 378 EEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQF 437
EEAEE++R MP + D+ ++W +LL C+ + M ER+A++ +++ P D Y
Sbjct: 424 EEAEELIRNMPIEPDD-----VIWKALLGACKMHKNLKMGERVAETLMELAPHDSGSYVA 478
Query: 438 LLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLKEVVEKLKV 483
L N+YA G WE VARVR MK + + PGC +++ ++ + V
Sbjct: 479 LSNLYASLGNWEAVARVRLKMKGMDIRKDPGCSWIEIHGIIHEFLV 524
Score = 75.9 bits (185), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 70/311 (22%), Positives = 124/311 (39%), Gaps = 69/311 (22%)
Query: 166 SGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGC---SLKLFREMMKSG-FRGNDKT 221
S D+ A +F MPE N WN ++ +++ + +L LF M+ G + N T
Sbjct: 65 SRDIDYARAVFRQMPEPNCFCWNTILRILAETNDEHLQSEALMLFSAMLCDGRVKPNRFT 124
Query: 222 MASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVE---------- 271
SVL AC R++R EG+ +HG V+ + + + L+ +Y C +E
Sbjct: 125 FPSVLKACARASRLREGKQIHGLIVKFGFHEDEFVISNLVRMYVMCAVMEDAYSLFCKNV 184
Query: 272 -------------------------------------VAQRVFDSMADRNLVCWNAMILG 294
A+ +FD M R++V WN MI G
Sbjct: 185 VDFDGSCQMELDKRKQDGNVVLWNIMIDGQVRLGDIKSAKNLFDEMPPRSVVSWNVMISG 244
Query: 295 HCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDF 354
+ +G E I LF + +I P+ +T + V+ A R L G K+
Sbjct: 245 YAQNGHFIEAINLFQEM-----QSSNIDPNYVTLVSVLPAIARIGALELG-KWIHLYAGK 298
Query: 355 YKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAV 414
K++ + + ++Y+ ++A ++ +P+ N +I W +++ GA
Sbjct: 299 NKVEIDDVLGSALVDMYSKCGSIDKALQVFETLPKRN------AITWSAII------GAF 346
Query: 415 AMVERLAKSFV 425
AM R + +
Sbjct: 347 AMHGRAEDAII 357
Score = 42.0 bits (97), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 28/131 (21%), Positives = 58/131 (44%), Gaps = 4/131 (3%)
Query: 35 GSPDYTVLVFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLF 94
GS D + VF+ + +A+I A++ + ++ + M K G PN ++ +
Sbjct: 319 GSIDKALQVFETLPKRNAITWSAIIGAFAMHGRAEDAIIHFHLMGKAGVTPNDVAYIGIL 378
Query: 95 GSCAKTGCVERGGMCHGLALK-NGVDFELPVMNSLINMYGCFGAMDCARNMFVQM--SPR 151
+C+ G VE G +K G+ + ++++ G G ++ A + M P
Sbjct: 379 SACSHAGLVEEGRSFFSHMVKVVGLQPRIEHYGCMVDLLGRAGHLEEAEELIRNMPIEPD 438
Query: 152 DLISWNSIVSG 162
D+I W +++
Sbjct: 439 DVI-WKALLGA 448
>gi|255551084|ref|XP_002516590.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223544410|gb|EEF45931.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 517
Score = 281 bits (719), Expect = 6e-73, Method: Compositional matrix adjust.
Identities = 155/457 (33%), Positives = 246/457 (53%), Gaps = 21/457 (4%)
Query: 38 DYTVLVFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIK---------NGFMPNSY 88
DY +FK + +P + NA+I+A +++ + + FY QM++ + +P+ +
Sbjct: 37 DYASFLFKEVIDPNAYLYNAMIRACTHNSMYSLTIDFYKQMLREYRNSQTSEDLILPDEF 96
Query: 89 TFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYG-CFGAMDCARNMFVQ 147
TF + +CA+ G G H K G L N+LI+MY C +D A N+F +
Sbjct: 97 TFPFVVKACARLGLHNLGKQVHAQFFKFGKKSHLITENALIDMYTKCDNLLD-AHNLFDE 155
Query: 148 MSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLF 207
M R ISWN I+SGHVR G M A LFD MP R +VSW +ISGY++ G+ +L +F
Sbjct: 156 MHERGAISWNGIISGHVRLGQMRRARALFDEMPNRTIVSWTAIISGYTRIGSYIDALDVF 215
Query: 208 REMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKC 267
REM +G ++ ++ SVL AC + G+ +H + R L + ALI++Y+KC
Sbjct: 216 REMQIAGIEPDEASIISVLPACAKLGALETGKWIHMFCARNGLLRRTCICNALIEMYTKC 275
Query: 268 QKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEIT 327
++ A ++FD M R+++ W+ MI G HGK E I +F + +I P+ IT
Sbjct: 276 GCIDQACQLFDQMRGRDVISWSTMIGGLANHGKVREAIAIFERM-----KQTNIKPNGIT 330
Query: 328 FIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKM 387
F+G++ AC A EG YF M + I+P HY + +L A +A +I+ KM
Sbjct: 331 FVGLLSACAHAGFWEEGLMYFDTMKKDFHIEPEIEHYGSLVDLLGRAGRLSQALDIVEKM 390
Query: 388 PEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQ 447
P M +S +W SLLS CR + + + +++P D Y L N+YA G+
Sbjct: 391 P-----MKPDSKIWGSLLSSCRTHCNIEVAVIAMEHLEELEPDDTGNYVLLSNIYADLGK 445
Query: 448 WEDVARVRELMKKRRMGRMPGCRLVDLKEVVEKLKVG 484
W+DV+R+R+L++ +RM + PGC L+++ V ++ G
Sbjct: 446 WDDVSRMRKLVRSKRMKKTPGCSLIEVNNVAQEFVSG 482
Score = 46.6 bits (109), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 39/158 (24%), Positives = 68/158 (43%), Gaps = 7/158 (4%)
Query: 237 EGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHC 296
E + H ++ +L + L T +ID+ + + ++ A +F + D N +NAMI C
Sbjct: 3 ELKKNHALVIKYALSQSNFLVTKMIDVCDRNEDMDYASFLFKEVIDPNAYLYNAMIRA-C 61
Query: 297 IHGKPEE-GIKLFTALV----NGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQM 351
H I + ++ N + I PDE TF V+ AC R L G++ Q
Sbjct: 62 THNSMYSLTIDFYKQMLREYRNSQTSEDLILPDEFTFPFVVKACARLGLHNLGKQVHAQF 121
Query: 352 IDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPE 389
F K K + + ++Y + +A + +M E
Sbjct: 122 FKFGK-KSHLITENALIDMYTKCDNLLDAHNLFDEMHE 158
>gi|296085345|emb|CBI29077.3| unnamed protein product [Vitis vinifera]
Length = 671
Score = 281 bits (719), Expect = 6e-73, Method: Compositional matrix adjust.
Identities = 158/503 (31%), Positives = 270/503 (53%), Gaps = 20/503 (3%)
Query: 1 MKQLLQIQAHLITSGLFFNNSFWTINLLKHSADFGSPD---YTVLVFKCINNPGTFCVNA 57
++ L Q+ A +IT N+ F L SA P Y +F + NP N+
Sbjct: 80 LRHLKQVHAQIIT---HHNSPFQLSALASLSALSPFPTFLAYAKTIFHHLQNPPPSLYNS 136
Query: 58 VIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNG 117
+I+A S+S P + + Y M+++G P+ T+ + +C ++ G + H +K+G
Sbjct: 137 LIRALSSSKTPLEALPLYHTMLQSGLKPDHMTYPFVIKACNESSVTWFGLLVHTHVVKSG 196
Query: 118 VDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFD 177
+ + +++SLI++Y + A+ +F S RD++SWN+++ G+V+ +M A +FD
Sbjct: 197 FECDSYIVSSLIHLYANGKDLGAAKQLFNLCSARDVVSWNAMIDGYVKHVEMGHARMVFD 256
Query: 178 IMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNE 237
M R+V+SWN MI+GY+ G P +L LF +M G + + T+ S+L+AC ++
Sbjct: 257 RMVCRDVISWNTMINGYAICGKPNEALALFDQMRAVGVKPTEATVVSLLSACAHLGALDK 316
Query: 238 GRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCI 297
G +H Y ++ N I+ TAL+D+Y+KC K+ +A +VF++M ++++ WN +I G I
Sbjct: 317 GLHLHTYINDNRIEVNSIVGTALVDMYAKCGKISLATQVFNAMESKDVLAWNTIIAGMAI 376
Query: 298 HGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKI 357
HG +E +LF + V P++ITF+ ++ AC A ++ EG+K M Y I
Sbjct: 377 HGNVKEAQQLFKEMKEAGV-----EPNDITFVAILSACSHAGMVDEGQKLLDCMSSSYGI 431
Query: 358 KPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMV 417
+P HY C+ +L A A EEA E++ MP + + + +LL CR G +
Sbjct: 432 EPKVEHYGCVIDLLARAGFLEEAMELIGTMPMEPNPSALG-----ALLGGCRIHGNFELG 486
Query: 418 ERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLKEV 477
E + K +++ P RY L N+YA A +W+D +VR LMK + ++PG +++LK +
Sbjct: 487 EMVGKRLINLQPCHSGRYILLSNIYAAAKKWDDARKVRNLMKVNGISKVPGVSVIELKGM 546
Query: 478 VEKLKVGHFWRGGMKEEVNKMME 500
V + G W E NK+ E
Sbjct: 547 VHRFVAGD-WS---HPESNKIYE 565
>gi|356524477|ref|XP_003530855.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g06145-like [Glycine max]
Length = 529
Score = 281 bits (718), Expect = 7e-73, Method: Compositional matrix adjust.
Identities = 148/468 (31%), Positives = 239/468 (51%), Gaps = 42/468 (8%)
Query: 44 FKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCV 103
F + NP NA+I+ + C +Q +V Y+ M++N MP SY+F SL +C
Sbjct: 33 FANVQNPNVLVFNALIRGCVHCCYSEQALVHYMHMLRNNVMPTSYSFSSLIKACTLLVDS 92
Query: 104 ERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGH 163
G HG K+G D + V +LI Y FG + +R +F M RD+ +W +++S H
Sbjct: 93 AFGEAVHGHVWKHGFDSHVFVQTTLIEFYSTFGDVGGSRRVFDDMPERDVFAWTTMISAH 152
Query: 164 VRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCS-------------------- 203
VR GDM++A LFD MPE+NV +WN MI GY K GN +
Sbjct: 153 VRDGDMASAGRLFDEMPEKNVATWNAMIDGYGKLGNAESAEFLFNQMPARDIISWTTMMN 212
Query: 204 -----------LKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKP 252
+ LF +++ G ++ TM +V++AC G+ VH Y V
Sbjct: 213 CYSRNKRYKEVIALFHDVIDKGMIPDEVTMTTVISACAHLGALALGKEVHLYLVLQGFDL 272
Query: 253 NIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALV 312
++ + ++LID+Y+KC +++A VF + +NL CWN +I G HG EE +++F
Sbjct: 273 DVYIGSSLIDMYAKCGSIDMALLVFYKLQTKNLFCWNCIIDGLATHGYVEEALRMF---- 328
Query: 313 NGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYA 372
G + I P+ +TFI ++ AC A + EGR++F M+ Y I P HY CM +L +
Sbjct: 329 -GEMERKRIRPNAVTFISILTACTHAGFIEEGRRWFMSMVQDYCIAPQVEHYGCMVDLLS 387
Query: 373 GAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDF 432
A L E+A E++R M + + S +W +LL+ C+ + + ++ + ++P +
Sbjct: 388 KAGLLEDALEMIRNMTVEPN-----SFIWGALLNGCKLHKNLEIAHIAVQNLMVLEPSNS 442
Query: 433 SRYQFLLNVYAVAGQWEDVARVRELMKKRRM-GRMPGCRLVDLKEVVE 479
Y L+N+YA +W +VA++R MK + R PG V++ + V
Sbjct: 443 GHYSLLVNMYAEENRWNEVAKIRTTMKDLGVEKRCPGSSWVEINKTVH 490
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 55/258 (21%), Positives = 107/258 (41%), Gaps = 26/258 (10%)
Query: 6 QIQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSNS 65
++ +L+ G F + + +L+ A GS D +LVF + FC N +I +
Sbjct: 260 EVHLYLVLQG-FDLDVYIGSSLIDMYAKCGSIDMALLVFYKLQTKNLFCWNCIIDGLATH 318
Query: 66 CVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERG-----GMCHGLALKNGVDF 120
++ + + +M + PN+ TF+S+ +C G +E G M + V+
Sbjct: 319 GYVEEALRMFGEMERKRIRPNAVTFISILTACTHAGFIEEGRRWFMSMVQDYCIAPQVE- 377
Query: 121 ELPVMNSLINMYGCF-GAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIM 179
M L++ G A++ RNM V+ P I W ++++G ++ AH
Sbjct: 378 HYGCMVDLLSKAGLLEDALEMIRNMTVE--PNSFI-WGALLNGCKLHKNLEIAH------ 428
Query: 180 PERNVVSWNIMISGYSKSGNPGCSLKLFREMMK----SGFRGNDKTMASVLTACGRSARF 235
+ N+M+ S SG+ + ++ E + + R K + V C S+
Sbjct: 429 ----IAVQNLMVLEPSNSGHYSLLVNMYAEENRWNEVAKIRTTMKDLG-VEKRCPGSSWV 483
Query: 236 NEGRSVHGYTVRTSLKPN 253
++VH + + P+
Sbjct: 484 EINKTVHLFAASDTYHPS 501
>gi|225432514|ref|XP_002277532.1| PREDICTED: pentatricopeptide repeat-containing protein At5g19020,
mitochondrial [Vitis vinifera]
Length = 694
Score = 281 bits (718), Expect = 8e-73, Method: Compositional matrix adjust.
Identities = 160/449 (35%), Positives = 239/449 (53%), Gaps = 13/449 (2%)
Query: 23 WTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNG 82
W + L +S G D +F+ I +I Y + + Y M++ G
Sbjct: 253 WNVMLNGYSKS-GLVDLARDLFERIPAKDVVSWGTIIDGYVQIERLGEALRMYRSMLRTG 311
Query: 83 FMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCAR 142
PN V L +C +T V G HG+ ++ G D + ++I+ Y G ++ A
Sbjct: 312 VGPNEVMIVDLISACGRTMAVSEGQQFHGIIVRTGFDCYDFIQATIIHFYAACGEINLAF 371
Query: 143 NMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGC 202
F S + SWN+++SG VR+G + A +LFD MPER+V SW+ MISGYS++ P
Sbjct: 372 LQFELGSKDHVSSWNALISGFVRNGMIEQARQLFDEMPERDVFSWSSMISGYSQNEQPDL 431
Query: 203 SLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALID 262
+L+LF EM+ G + N+ TM SV +A EGR H Y + S+ N L+ ALID
Sbjct: 432 ALQLFHEMVAGGVQPNEITMVSVFSAIATLGTLMEGRWAHEYILSNSIPLNDNLNAALID 491
Query: 263 LYSKCQKVEVAQRVFDSMADR--NLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGS 320
+Y+KC + +A ++F + DR ++ WNA+I G +HG +KLF+ L
Sbjct: 492 MYAKCGSITIALQLFYEIQDRVSSVSPWNAIICGLAMHGHANVSLKLFSQLQR-----VR 546
Query: 321 ISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEA 380
I P+ ITFIGV+ AC A L+ G KYF+ M + Y I+PN HY CM +L A +EA
Sbjct: 547 IKPNSITFIGVLSACCHAGLVDTGEKYFKGMKNLYNIEPNIKHYGCMIDLLGRAGRLKEA 606
Query: 381 EEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLN 440
E++RKMP M + ++W +LL+ CR G V + ER A++ +D + L N
Sbjct: 607 AEMIRKMP-----MKADVVIWGTLLAACRTHGNVEIGERAAENLAKLDISHGAGRVLLSN 661
Query: 441 VYAVAGQWEDVARVRELMKKRRMGRMPGC 469
+YA AG+W+D VR M+ +RM + PGC
Sbjct: 662 IYADAGRWDDAFLVRRAMQSQRMKKSPGC 690
Score = 148 bits (373), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 80/295 (27%), Positives = 151/295 (51%), Gaps = 36/295 (12%)
Query: 82 GFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCA 141
G +PN T S+ + + G + M H L+ K G++ V +L++MY ++ A
Sbjct: 179 GVIPNEVTLASVISAYSHVGGILNCRMLHALSFKLGLEALNIVATNLVHMYCVCSSLGNA 238
Query: 142 RNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPG 201
R +F ++ R++++WN +++G+ +SG + A +LF+ +P ++VVSW +I GY + G
Sbjct: 239 RVLFDEIPERNVVTWNVMLNGYSKSGLVDLARDLFERIPAKDVVSWGTIIDGYVQIERLG 298
Query: 202 CSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALI 261
+L+++R M+++G N+ + +++ACGR+ +EG+ HG VRT + +I
Sbjct: 299 EALRMYRSMLRTGVGPNEVMIVDLISACGRTMAVSEGQQFHGIIVRTGFDCYDFIQATII 358
Query: 262 DLYSKCQK-------------------------------VEVAQRVFDSMADRNLVCWNA 290
Y+ C + +E A+++FD M +R++ W++
Sbjct: 359 HFYAACGEINLAFLQFELGSKDHVSSWNALISGFVRNGMIEQARQLFDEMPERDVFSWSS 418
Query: 291 MILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGR 345
MI G+ + +P+ ++LF +V G + P+EIT + V A L EGR
Sbjct: 419 MISGYSQNEQPDLALQLFHEMV-----AGGVQPNEITMVSVFSAIATLGTLMEGR 468
Score = 115 bits (289), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 82/308 (26%), Positives = 147/308 (47%), Gaps = 31/308 (10%)
Query: 89 TFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQM 148
T VS SC+ + +G H L K+G+ + V NSLI+ Y + AR++F
Sbjct: 54 TLVSALKSCSSLLALSQGQQIHSLVFKSGLLSNIFVKNSLISFYVKCRLISNARSLFDTC 113
Query: 149 SPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFR 208
S D +S N +++G+V+SG + A LF+ MP + VS+ M+ G +++ ++ +F+
Sbjct: 114 SVLDPVSCNIMLAGYVKSGSLDNARHLFEKMPIKGCVSYTTMVMGLAQNNCWLEAIGVFK 173
Query: 209 EMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQ 268
+M +G N+ T+ASV++A R +H + + L+ I+ T L+ +Y C
Sbjct: 174 DMRFAGVIPNEVTLASVISAYSHVGGILNCRMLHALSFKLGLEALNIVATNLVHMYCVCS 233
Query: 269 KVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVN------GTVAGG--- 319
+ A+ +FD + +RN+V WN M+ G+ G + LF + GT+ G
Sbjct: 234 SLGNARVLFDEIPERNVVTWNVMLNGYSKSGLVDLARDLFERIPAKDVVSWGTIIDGYVQ 293
Query: 320 -----------------SISPDEITFIGVICACVRAELLTEGRKY----FRQMIDFYK-I 357
+ P+E+ + +I AC R ++EG+++ R D Y I
Sbjct: 294 IERLGEALRMYRSMLRTGVGPNEVMIVDLISACGRTMAVSEGQQFHGIIVRTGFDCYDFI 353
Query: 358 KPNFAHYW 365
+ H++
Sbjct: 354 QATIIHFY 361
>gi|224119882|ref|XP_002318186.1| predicted protein [Populus trichocarpa]
gi|222858859|gb|EEE96406.1| predicted protein [Populus trichocarpa]
Length = 537
Score = 281 bits (718), Expect = 8e-73, Method: Compositional matrix adjust.
Identities = 166/494 (33%), Positives = 261/494 (52%), Gaps = 20/494 (4%)
Query: 1 MKQLLQIQAHLIT-SGLFFNNS-------FWTINLLKHSADFGSP-DYTVLVFKCINNPG 51
+ QL Q+ A+ IT + L F++S +T+ S S Y +F I NP
Sbjct: 29 ISQLHQLHAYTITNTPLSFHSSPSLLTKFLYTLTTKAKSKSSTSLLHYAKSIFNSIQNPS 88
Query: 52 TFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHG 111
TFC N +I+ ++ P + F+ QM + +S++F +CA+ G V H
Sbjct: 89 TFCYNTIIRVHTLLSFPIPALHFFTQMRRLSVPLDSHSFPFTLKACAQLGGVFSARCLHC 148
Query: 112 LALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSA 171
LK G +L VMNSLI+ Y + A +F + RD++S+N ++ G V++GD+
Sbjct: 149 QVLKFGFLSDLYVMNSLIHGYMVSDMSNDAYKVFDESPQRDVVSYNVLIDGFVKAGDVVK 208
Query: 172 AHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGR 231
A ELFD+MP R+ VSWN +I+G +K +++LF MM R ++ + S L+AC +
Sbjct: 209 ARELFDLMPVRDSVSWNTIIAGCAKGDYCEEAIELFDFMMDLEIRPDNVALVSTLSACAQ 268
Query: 232 SARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAM 291
+G+ +H Y R ++K + L T L+D Y+KC V++A ++FDS +D+NL WNAM
Sbjct: 269 LGELEKGKKIHDYIERNAMKVDTFLSTGLVDFYAKCGCVDIALKIFDSSSDKNLFTWNAM 328
Query: 292 ILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQM 351
++G +HG E ++ F+ ++ V PD I+ +GV+ C + L+ E RK F +M
Sbjct: 329 LVGLAMHGYGELLLEYFSRMIEAGV-----KPDGISILGVLVGCSHSGLVDEARKLFDEM 383
Query: 352 IDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQ 411
Y + HY CMA+L A L ++ E+++ MP D MS +W LL CR
Sbjct: 384 ESVYGVPREPKHYGCMADLLGRAGLIKKVMEMIKDMPRGGD-MS----VWSGLLGGCRIH 438
Query: 412 GAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARV-RELMKKRRMGRMPGCR 470
G V + E+ AK +++ P D Y L NVYA A +WEDV + R L R + ++ G
Sbjct: 439 GDVEIAEKAAKHLMELKPDDGGVYSILANVYANAERWEDVMNIRRSLSSNRVVTKIAGFS 498
Query: 471 LVDLKEVVEKLKVG 484
L+ L V + G
Sbjct: 499 LIQLDGVAHEFIAG 512
>gi|255586940|ref|XP_002534070.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223525897|gb|EEF28314.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 533
Score = 280 bits (717), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 163/494 (32%), Positives = 265/494 (53%), Gaps = 11/494 (2%)
Query: 1 MKQLLQIQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIK 60
MK L +I + LI +GL + + + L ++ G +Y LVF I NP F N +I+
Sbjct: 35 MKDLKKIHSQLIKTGLAKDTNAASRILAFCASPAGDINYAYLVFVQIQNPNIFAWNTIIR 94
Query: 61 AYSNSCVPDQGVVFYLQMI-KNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVD 119
+S S VP + Y+ M+ + P T+ S+F + A+ G HG +K G++
Sbjct: 95 GFSRSSVPQNSISLYIDMLLTSPVQPQRLTYPSVFKAFAQLDLASEGAQLHGKMIKLGLE 154
Query: 120 FELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIM 179
+ + N+++ MY G AR +F + D+++WN+++ G + G + + LFD M
Sbjct: 155 NDSFIRNTILFMYVNCGFTSEARKVFDRGMDFDIVAWNTMIMGVAKCGLVDESRRLFDKM 214
Query: 180 PERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGR 239
RN VSWN MISGY ++G +L+LF++M ++ TM S+L AC +G
Sbjct: 215 SLRNAVSWNSMISGYVRNGRFFDALELFQKMQVERIEPSEFTMVSLLNACACLGAIRQGE 274
Query: 240 SVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHG 299
+H Y V+ + N I+ TA+ID+YSKC ++ A +VF S R L CWN+MILG ++G
Sbjct: 275 WIHDYMVKKKFELNPIVVTAIIDMYSKCGSIDKAVQVFQSAPRRGLSCWNSMILGLAMNG 334
Query: 300 KPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKP 359
+ E ++LF+ L + PD+++FI V+ AC ++ + + YF M D YKIKP
Sbjct: 335 QENEALQLFSVL-----QSSDLRPDDVSFIAVLTACDHTGMVDKAKDYFLLMRDKYKIKP 389
Query: 360 NFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVER 419
H+ CM ++ A L EEAEE++R M D D +I+W SLL C G + M +R
Sbjct: 390 GIKHFSCMVDVLGRAGLLEEAEELIRSMHVDPD-----AIIWGSLLWSCCKYGNIKMAKR 444
Query: 420 LAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLKEVVE 479
A ++++P + S + + N YA A +E+ + R +K+ +G+ PGC +++ V
Sbjct: 445 AANHLIELNPSESSSFVLVANAYAAANNFEEALKERLTLKENHIGKEPGCSCIEVGGEVH 504
Query: 480 KLKVGHFWRGGMKE 493
+ G +KE
Sbjct: 505 EFVAGGRAHPEIKE 518
>gi|449496903|ref|XP_004160258.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Cucumis sativus]
Length = 583
Score = 280 bits (717), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 151/462 (32%), Positives = 252/462 (54%), Gaps = 17/462 (3%)
Query: 3 QLLQIQAHLITSGLFFNNSFWTINLLKHSA--DFGSP-DYTVLVFKCINNPGTFCVNAVI 59
+L Q+ AHL+ + N+ ++ L + ++ F S Y L+F+ ++ N +
Sbjct: 30 ELKQLHAHLLKT----NSPLSSLPLSRVASVCAFNSSFSYAKLIFQLLDASEVTHWNTCL 85
Query: 60 KAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVD 119
++++ P + + ++ + P+ YT + +C++ V G + HG K G+
Sbjct: 86 RSFAEGDSPADAISLFYRLREFDISPDHYTCSFVLKACSRLLDVRNGKIVHGYVEKLGLQ 145
Query: 120 FELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIM 179
+ + N ++++Y G + AR +F +M RD+I+WN +++ V+ GD A++LF M
Sbjct: 146 SNMFLQNMIVHLYALCGEIGVARKVFDKMPQRDVITWNIMIARLVKMGDAEGAYKLFAEM 205
Query: 180 PERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGR 239
PERNV SW MI GY++ G ++ LF EM +G N+ T+ +VL AC GR
Sbjct: 206 PERNVRSWTSMIGGYAQCGKSKEAIDLFLEMEDAGLLPNEVTVVAVLVACADMGNLVLGR 265
Query: 240 SVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHG 299
+H ++ R+ + NI + LID+Y KC +E A R+FD+M +R +V W+AMI G HG
Sbjct: 266 RIHDFSNRSGYEKNIRVCNTLIDMYVKCGCLEDACRIFDNMEERTVVSWSAMIAGLAAHG 325
Query: 300 KPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKP 359
+ E+ + LF ++N + P+ +TFIG++ AC ++ +GRKYF M Y I P
Sbjct: 326 RAEDALALFNKMIN-----TGVKPNAVTFIGILHACSHMGMVEKGRKYFASMTRDYGIVP 380
Query: 360 NFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVER 419
HY CM +L++ A L +EA E + MP ++ ++W +LL C+ V + E
Sbjct: 381 RIEHYGCMVDLFSRAGLLQEAHEFIMNMP-----IAPNGVVWGALLGGCKVHKNVKLAEE 435
Query: 420 LAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKR 461
+ +DP + Y L N+YA AG+WEDVARVR+LM+ R
Sbjct: 436 ATRHLSKLDPLNDGYYVVLSNIYAEAGRWEDVARVRKLMRDR 477
Score = 92.4 bits (228), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 61/250 (24%), Positives = 105/250 (42%), Gaps = 26/250 (10%)
Query: 123 PVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPER 182
P + L N F ++ SP + + + S + S A +F ++
Sbjct: 17 PSTHLLHNFTSPFELKQLHAHLLKTNSPLSSLPLSRVASVCAFNSSFSYAKLIFQLLDAS 76
Query: 183 NVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVH 242
V WN + +++ +P ++ LF + + + T + VL AC R G+ VH
Sbjct: 77 EVTHWNTCLRSFAEGDSPADAISLFYRLREFDISPDHYTCSFVLKACSRLLDVRNGKIVH 136
Query: 243 GYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPE 302
GY + L+ N+ L ++ LY+ C ++ VA++VFD M R+++ WN MI G E
Sbjct: 137 GYVEKLGLQSNMFLQNMIVHLYALCGEIGVARKVFDKMPQRDVITWNIMIARLVKMGDAE 196
Query: 303 EGIKLF-----------TALVNGTVAGGS---------------ISPDEITFIGVICACV 336
KLF T+++ G G + P+E+T + V+ AC
Sbjct: 197 GAYKLFAEMPERNVRSWTSMIGGYAQCGKSKEAIDLFLEMEDAGLLPNEVTVVAVLVACA 256
Query: 337 RAELLTEGRK 346
L GR+
Sbjct: 257 DMGNLVLGRR 266
>gi|359479564|ref|XP_002274514.2| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Vitis vinifera]
Length = 616
Score = 280 bits (717), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 159/474 (33%), Positives = 264/474 (55%), Gaps = 18/474 (3%)
Query: 3 QLLQIQAHLITSGLFFNNSFWTINLLKH---SADFGSPDYTVLVFKCINNPGTFCVNAVI 59
+L QI A +I + L N+ F L+ S G DY VF I +P +F A+I
Sbjct: 21 ELRQIHAQMIKTNLL-NHQFTVSRLIAFCSLSGVSGGLDYASSVFSRIQHPNSFIFFALI 79
Query: 60 KAYSNSCVPDQGVVFYLQMIK--NGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNG 117
K +S++ P + ++ Y +M+ N ++ S+ +C K + G HG LK
Sbjct: 80 KGFSDTSNPVESLILYARMLSCLNYSSGVEFSIPSVLKACGKLLAFDEGRQVHGQVLKTH 139
Query: 118 VDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFD 177
+ F+ V NS++ MY FG ++ AR +F +M RD++SWNS+++G++++G++ A ++F+
Sbjct: 140 LWFDPFVGNSMVRMYIDFGEIELARRVFDRMPNRDVVSWNSMIAGYLKAGEIELAKKVFE 199
Query: 178 IMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNE 237
M +++VV+W MIS Y ++ P +L LFREM+ G R + + SVL+A E
Sbjct: 200 TMSDKDVVTWTSMISAYVQNRCPMKALDLFREMLSLGLRPDGPAIVSVLSAIADLGFVEE 259
Query: 238 GRSVHGYTVRTSLK-PNIILDTALIDLYSKCQKVEVAQRVFDSMAD-RNLVCWNAMILGH 295
G+ +H Y ++ + + +ALID+YSKC +E A VF S++ RN+ WN+MI G
Sbjct: 260 GKWLHAYVSMNKIELSSGFIGSALIDMYSKCGYIENAYHVFRSISHRRNIGDWNSMISGL 319
Query: 296 CIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFY 355
IHG E + +F + I P+EITF+G++ C L+ EG+ YF M + Y
Sbjct: 320 AIHGLAREALDIFVEMER-----MDIEPNEITFLGLLSTCSHGGLVEEGQFYFESMHEKY 374
Query: 356 KIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVA 415
KI P HY CM +L+ A E+A +++ MP + D ++ W ++LS G +
Sbjct: 375 KIVPRIQHYGCMIDLFGRAGRLEDALGVIQNMPFEADLLA-----WKAILSASMKHGHIE 429
Query: 416 MVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGC 469
+ + A +++ P D S Y L N+YA AG+W+DVA++R +M++R + ++ GC
Sbjct: 430 IGKSAALRAIELAPDDSSSYVLLSNIYAKAGRWDDVAKIRLMMRQRGVKKIAGC 483
>gi|413947530|gb|AFW80179.1| hypothetical protein ZEAMMB73_142662 [Zea mays]
Length = 649
Score = 280 bits (716), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 152/430 (35%), Positives = 238/430 (55%), Gaps = 11/430 (2%)
Query: 56 NAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAK-TGCVERGGMCHGLAL 114
NA+I ++ + ++ M + G P T+VS+ +C K TG V G HG +
Sbjct: 113 NALISGHNRCRRFGEACCSFVDMARAGAAPTPVTYVSVLSACGKGTGDVLLGMQVHGRVV 172
Query: 115 KNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHE 174
+GV +L V N+L++MY M+ A +F M R ++SW S++SG R G + A +
Sbjct: 173 GSGVLPDLRVENALVDMYAECADMESAWKLFDGMQVRSVVSWTSLLSGLTRLGRVDEARD 232
Query: 175 LFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSAR 234
LF MPER+ VSW MI GY ++ +L++FREM S ++ TM SV+TAC +
Sbjct: 233 LFGRMPERDTVSWTAMIDGYVQAARFREALEMFREMQCSNVSADEFTMVSVITACAQLGA 292
Query: 235 FNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILG 294
G V Y R +K + + ALID+YSKC +E A VF M R+ W A+ILG
Sbjct: 293 LEMGEWVRVYMSRQGIKMDAFVGNALIDMYSKCGSIERALDVFKDMHHRDKFTWTAIILG 352
Query: 295 HCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDF 354
++G EE I++F ++ G S +PDE+TFIGV+ AC A L+ +GR++F M +
Sbjct: 353 LAVNGYGEEAIEMFHRMI-----GVSETPDEVTFIGVLTACTHAGLVDKGREFFLSMRET 407
Query: 355 YKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAV 414
Y I PN HY C+ +L+ A EA + + +MP M+ S +W +LL+ CR G
Sbjct: 408 YNIAPNVVHYGCIIDLFGRAGKITEALDAIDQMP-----MTPNSTIWGTLLAACRVHGNS 462
Query: 415 AMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDL 474
+ E + + + MDP++ + Y L N+YA +WEDV R+R + ++ + + PGC L+++
Sbjct: 463 EIGELVTERLLQMDPENSTVYTLLSNIYAKCNRWEDVRRLRHTIMEKGIKKEPGCSLIEM 522
Query: 475 KEVVEKLKVG 484
++ + G
Sbjct: 523 NGIIHEFVAG 532
Score = 97.4 bits (241), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 87/359 (24%), Positives = 152/359 (42%), Gaps = 60/359 (16%)
Query: 69 DQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSL 128
+ V Y +M+ G MP++YTF L + A+ H +K G+ V SL
Sbjct: 25 EDAVAGYARMLARGAMPDAYTFPPLLKAVARGSSAAPVRAVHAHVVKFGMGRNAHVATSL 84
Query: 129 INMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWN 188
+ Y G AR + + + WN+++SGH R
Sbjct: 85 VTAYAAGGDGAAARALLSERERDTPVVWNALISGHNRC---------------------- 122
Query: 189 IMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGR-SARFNEGRSVHGYTVR 247
+ G CS F +M ++G T SVL+ACG+ + G VHG V
Sbjct: 123 ------RRFGEACCS---FVDMARAGAAPTPVTYVSVLSACGKGTGDVLLGMQVHGRVVG 173
Query: 248 TSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKL 307
+ + P++ ++ AL+D+Y++C +E A ++FD M R++V W +++ G G+ +E L
Sbjct: 174 SGVLPDLRVENALVDMYAECADMESAWKLFDGMQVRSVVSWTSLLSGLTRLGRVDEARDL 233
Query: 308 F-----------TALVNGTVAGG---------------SISPDEITFIGVICACVRAELL 341
F TA+++G V ++S DE T + VI AC + L
Sbjct: 234 FGRMPERDTVSWTAMIDGYVQAARFREALEMFREMQCSNVSADEFTMVSVITACAQLGAL 293
Query: 342 TEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIM 400
G ++ R + IK + + ++Y+ E A ++ + M D ++ +I+
Sbjct: 294 EMG-EWVRVYMSRQGIKMDAFVGNALIDMYSKCGSIERALDVFKDM-HHRDKFTWTAII 350
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 64/284 (22%), Positives = 118/284 (41%), Gaps = 34/284 (11%)
Query: 23 WTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNG 82
WT +LL G D +F + T A+I Y + + + + +M +
Sbjct: 214 WT-SLLSGLTRLGRVDEARDLFGRMPERDTVSWTAMIDGYVQAARFREALEMFREMQCSN 272
Query: 83 FMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCAR 142
+ +T VS+ +CA+ G +E G + G+ + V N+LI+MY G+++ A
Sbjct: 273 VSADEFTMVSVITACAQLGALEMGEWVRVYMSRQGIKMDAFVGNALIDMYSKCGSIERAL 332
Query: 143 NMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGC 202
++F M RD +W +I+ G + ++GY +
Sbjct: 333 DVFKDMHHRDKFTWTAIILG--------------------------LAVNGYGEE----- 361
Query: 203 SLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRT-SLKPNIILDTALI 261
++++F M+ ++ T VLTAC + ++GR T ++ PN++ +I
Sbjct: 362 AIEMFHRMIGVSETPDEVTFIGVLTACTHAGLVDKGREFFLSMRETYNIAPNVVHYGCII 421
Query: 262 DLYSKCQKVEVAQRVFDSMA-DRNLVCWNAMILGHCIHGKPEEG 304
DL+ + K+ A D M N W ++ +HG E G
Sbjct: 422 DLFGRAGKITEALDAIDQMPMTPNSTIWGTLLAACRVHGNSEIG 465
>gi|296088765|emb|CBI38215.3| unnamed protein product [Vitis vinifera]
Length = 595
Score = 280 bits (716), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 152/492 (30%), Positives = 252/492 (51%), Gaps = 45/492 (9%)
Query: 37 PDYTVLVFKCINNPGTFCVNAVIKAYSNSCVPD-QGVVFYLQMIKNGFMPNSYTFVSLFG 95
P Y + + + P NA+I+ + S +G+V Y QM+ G +P++YT +
Sbjct: 89 PRYALSLLAQLRTPNLPLYNAIIRGLATSNNDSIEGLVVYKQMLSKGIVPDNYTIPFVLK 148
Query: 96 SCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLIS 155
+CA++ V G HG A+K G+ ++ V N+L+ MY + AR +F RDL+S
Sbjct: 149 ACAESRAVREGEEVHGQAIKMGLASDVYVSNTLMRMYAVCDVIRSARKVFDTSPQRDLVS 208
Query: 156 WNSIVSGHVR----------------------------------SGDMSAAHELFDIMPE 181
W +++ G+V+ GD + A ++F MP
Sbjct: 209 WTTMIQGYVKMGFAREGVGLYIIRNSNVNLDVFVGNALVDMYLKCGDANFARKVFQEMPV 268
Query: 182 RNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSV 241
+NVVSWN MISG ++ G SL +FR+M + G + +D T+ +VL +C G+ V
Sbjct: 269 KNVVSWNSMISGLAQKGQFKESLYMFRKMQRLGVKPDDVTLVAVLNSCANLGVLELGKWV 328
Query: 242 HGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKP 301
H Y R ++ + + AL+D+Y+KC ++ A VF +M +++ + AMI+G +HG+
Sbjct: 329 HAYLDRNQIRADGFIGNALVDMYAKCGSIDQACWVFQAMNRKDVYSYTAMIVGLAMHGQG 388
Query: 302 EEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNF 361
+ + LF+ + I PDE+TF+GV+ AC L+ EGRKYF M Y ++P
Sbjct: 389 GKALDLFSEM-----PKMGIEPDEVTFVGVLTACSHVGLVEEGRKYFEDMSTIYNLRPQL 443
Query: 362 AHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLA 421
HY CM +L A L EAEE +R MP + D + + +LL C+ G V + E +
Sbjct: 444 EHYGCMVDLLGRAGLINEAEEFIRNMPIEPD-----AFVLGALLGACKIHGKVELGESVM 498
Query: 422 KSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLKEVVEKL 481
K ++P+ Y + N+Y+ A +W D ++R+ MK+R + + PGC ++L V+ +
Sbjct: 499 KKIEKIEPRKDGAYVLMSNIYSSANRWRDALKLRKTMKERNLEKTPGCSSIELDGVIHEF 558
Query: 482 KVGHFWRGGMKE 493
+ G +KE
Sbjct: 559 QKGDKSHPKIKE 570
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 63/272 (23%), Positives = 110/272 (40%), Gaps = 33/272 (12%)
Query: 35 GSPDYTVLVFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLF 94
G ++ VF+ + N++I + + + + +M + G P+ T V++
Sbjct: 254 GDANFARKVFQEMPVKNVVSWNSMISGLAQKGQFKESLYMFRKMQRLGVKPDDVTLVAVL 313
Query: 95 GSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLI 154
SCA G +E G H +N + + + N+L++MY G++D A +F M+ +D+
Sbjct: 314 NSCANLGVLELGKWVHAYLDRNQIRADGFIGNALVDMYAKCGSIDQACWVFQAMNRKDVY 373
Query: 155 SWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSG 214
S+ +++ G G G +L LF EM K G
Sbjct: 374 SYTAMIVGLAMHG-------------------------------QGGKALDLFSEMPKMG 402
Query: 215 FRGNDKTMASVLTACGRSARFNEGRS-VHGYTVRTSLKPNIILDTALIDLYSKCQKVEVA 273
++ T VLTAC EGR + +L+P + ++DL + + A
Sbjct: 403 IEPDEVTFVGVLTACSHVGLVEEGRKYFEDMSTIYNLRPQLEHYGCMVDLLGRAGLINEA 462
Query: 274 QRVFDSMADRNLVCWNAMILGHC-IHGKPEEG 304
+ +M +LG C IHGK E G
Sbjct: 463 EEFIRNMPIEPDAFVLGALLGACKIHGKVELG 494
>gi|224091072|ref|XP_002309169.1| predicted protein [Populus trichocarpa]
gi|222855145|gb|EEE92692.1| predicted protein [Populus trichocarpa]
Length = 619
Score = 280 bits (716), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 157/491 (31%), Positives = 256/491 (52%), Gaps = 18/491 (3%)
Query: 1 MKQLLQIQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIK 60
+K L + A L+ GL +S+ +L+ S +FG+ +Y+ +F P F N +I
Sbjct: 23 LKHLKHVHAALLRLGLD-EDSYLLNKVLRFSFNFGNTNYSHRIFHQTKEPNIFLFNTMIH 81
Query: 61 AYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDF 120
+ + + Y M K G P+S+TF L +CA+ + G HGL +K G +
Sbjct: 82 GLVLNDSFQESIEIYHSMRKEGLSPDSFTFPFLLKACARLLDSKLGIKLHGLVVKAGCES 141
Query: 121 ELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELF---- 176
+ V SL+++YG G +D A +F + +++ +W +I+SG++ G A ++F
Sbjct: 142 DAFVNTSLVSLYGKCGFIDNAFKVFDDIPEKNVAAWTAIISGYIGVGKCREAIDMFRRAC 201
Query: 177 ---DIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSA 233
D M E+++VSW+ MI GY+ +G P +L LF +M+ GFR + M VL AC R
Sbjct: 202 SVFDGMLEKDIVSWSSMIQGYASNGLPKEALDLFFKMLNEGFRPDCYAMVGVLCACARLG 261
Query: 234 RFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMIL 293
G R N +L TALID+Y+KC +++ A VF M +++V WNA I
Sbjct: 262 ALELGNWASNLMDRNEFLGNPVLGTALIDMYAKCGRMDSAWEVFRGMRKKDIVVWNAAIS 321
Query: 294 GHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMID 353
G + G + LF G + I PD TF+G++CAC A L+ EGR+YF M
Sbjct: 322 GLAMSGHVKAAFGLF-----GQMEKSGIEPDGNTFVGLLCACTHAGLVDEGRQYFNSMER 376
Query: 354 FYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGA 413
+ + P HY CM +L A +EA ++++ MP M +I+W +LL CR
Sbjct: 377 VFTLTPEIEHYGCMVDLLGRAGFLDEAHQLVKSMP-----MEANAIVWGALLGGCRLHRD 431
Query: 414 VAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVD 473
+VE + K + ++P + Y L N+Y+ + +WED A++R +M +R + ++PG ++
Sbjct: 432 TQLVEGVLKQLIALEPSNSGNYVLLSNIYSASHKWEDAAKIRSIMSERGIKKVPGYSWIE 491
Query: 474 LKEVVEKLKVG 484
+ VV + VG
Sbjct: 492 VDGVVHEFLVG 502
>gi|168023826|ref|XP_001764438.1| predicted protein [Physcomitrella patens subsp. patens]
gi|54695178|dbj|BAD67154.1| PpPPR_91 [Physcomitrella patens]
gi|162684302|gb|EDQ70705.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 868
Score = 280 bits (716), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 150/431 (34%), Positives = 243/431 (56%), Gaps = 15/431 (3%)
Query: 43 VFKCINNPGTFCVNAVIKAYSNSCVPDQ---GVVFYL--QMIKNGFMPNSYTFVSLFGSC 97
+F ++ +A+I Y+ S D+ VF L +M + G PN TF+S+ +C
Sbjct: 315 IFDRMSKRDVISWSAMIAGYAQSGYKDKESIDEVFQLLERMRREGVFPNKVTFMSILRAC 374
Query: 98 AKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWN 157
G +E+G H K G + + + ++ NMY G++ A +F +M+ +++++W
Sbjct: 375 TAHGALEQGRQIHAELSKVGFELDRSLQTAIFNMYAKCGSIYEAEQVFSKMANKNVVAWT 434
Query: 158 SIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRG 217
S +S +++ GD+S+A ++F MP RNVVSWN+MI+GY+++G+ +L M GF+
Sbjct: 435 SFLSMYIKCGDLSSAEKVFSEMPTRNVVSWNLMIAGYAQNGDIVKVFELLSSMKAEGFQP 494
Query: 218 NDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVF 277
+ T+ ++L ACG A G+ VH V+ L+ + ++ T+LI +YSKC +V A+ VF
Sbjct: 495 DRVTVITILEACGALAGLERGKLVHAEAVKLGLESDTVVATSLIGMYSKCGQVAEARTVF 554
Query: 278 DSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVR 337
D M++R+ V WNAM+ G+ HG E + LF ++ V SP+EIT VI AC R
Sbjct: 555 DKMSNRDTVAWNAMLAGYGQHGDGLEAVDLFKRMLKERV-----SPNEITLTAVISACSR 609
Query: 338 AELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFE 397
A L+ EGR+ FR M + +K+ P HY CM +L A +EAEE ++ MP + D
Sbjct: 610 AGLVQEGREIFRMMQEDFKMTPRKQHYGCMVDLLGRAGRLQEAEEFIQSMPCEPD----- 664
Query: 398 SIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVREL 457
+W +LL C+ V + ER A ++++P S Y L N+YA AG+W+D +VR +
Sbjct: 665 ISVWHALLGACKSHNNVQLAERAAHHILELEPSYASVYITLSNIYAQAGRWDDSTKVRRV 724
Query: 458 MKKRRMGRMPG 468
M R + + G
Sbjct: 725 MDDRGLKKDRG 735
Score = 152 bits (384), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 111/444 (25%), Positives = 202/444 (45%), Gaps = 51/444 (11%)
Query: 16 LFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFY 75
++ NS IN D S + VF+ + +++I AY+ + P + +
Sbjct: 91 IYLGNSL--INFYSKFEDVASAEQ---VFRRMTLRDVVTWSSMIAAYAGNNHPAKAFDTF 145
Query: 76 LQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCF 135
+M PN TF+S+ +C +E+G H + G++ ++ V +LI MY
Sbjct: 146 ERMTDANIEPNRITFLSILKACNNYSILEKGRKIHTIVKAMGMETDVAVATALITMYS-- 203
Query: 136 GAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYS 195
+ G++S A E+F M ERNVVSW +I +
Sbjct: 204 -----------------------------KCGEISVACEVFHKMTERNVVSWTAIIQANA 234
Query: 196 KSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNII 255
+ + +L+ +M+++G N T S+L +C N GR +H + L+ ++I
Sbjct: 235 QHRKLNEAFELYEQMLQAGISPNAVTFVSLLNSCNTPEALNRGRRIHSHISERGLETDMI 294
Query: 256 LDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHG-KPEEGIKLFTALVNG 314
+ ALI +Y KC V+ A+ +FD M+ R+++ W+AMI G+ G K +E I L+
Sbjct: 295 VANALITMYCKCNSVQEAREIFDRMSKRDVISWSAMIAGYAQSGYKDKESIDEVFQLLER 354
Query: 315 TVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGA 374
G + P+++TF+ ++ AC L +GR+ ++ + + + + N+YA
Sbjct: 355 MRREG-VFPNKVTFMSILRACTAHGALEQGRQIHAELSKV-GFELDRSLQTAIFNMYAKC 412
Query: 375 ELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSR 434
EAE++ KM N + W S LS+ G ++ E++ F +M ++
Sbjct: 413 GSIYEAEQVFSKMANKN------VVAWTSFLSMYIKCGDLSSAEKV---FSEMPTRNVVS 463
Query: 435 YQFLLNVYAVAGQWEDVARVRELM 458
+ ++ YA G D+ +V EL+
Sbjct: 464 WNLMIAGYAQNG---DIVKVFELL 484
Score = 132 bits (332), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 83/310 (26%), Positives = 141/310 (45%), Gaps = 37/310 (11%)
Query: 80 KNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMD 139
+ G + NS T+ + CAK E G M H + GV+ ++ + NSLIN Y F
Sbjct: 49 QRGLLVNSNTYGCVIEHCAKARRFEDGKMVHKQLDELGVEIDIYLGNSLINFYSKFE--- 105
Query: 140 CARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGN 199
D+++A ++F M R+VV+W+ MI+ Y+ + +
Sbjct: 106 ----------------------------DVASAEQVFRRMTLRDVVTWSSMIAAYAGNNH 137
Query: 200 PGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTA 259
P + F M + N T S+L AC + +GR +H ++ ++ + TA
Sbjct: 138 PAKAFDTFERMTDANIEPNRITFLSILKACNNYSILEKGRKIHTIVKAMGMETDVAVATA 197
Query: 260 LIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGG 319
LI +YSKC ++ VA VF M +RN+V W A+I + H K E +L+ ++
Sbjct: 198 LITMYSKCGEISVACEVFHKMTERNVVSWTAIIQANAQHRKLNEAFELYEQMLQ-----A 252
Query: 320 SISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEE 379
ISP+ +TF+ ++ +C E L GR+ I ++ + + +Y +E
Sbjct: 253 GISPNAVTFVSLLNSCNTPEALNRGRR-IHSHISERGLETDMIVANALITMYCKCNSVQE 311
Query: 380 AEEILRKMPE 389
A EI +M +
Sbjct: 312 AREIFDRMSK 321
Score = 82.8 bits (203), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 51/196 (26%), Positives = 95/196 (48%), Gaps = 6/196 (3%)
Query: 196 KSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNII 255
K+G +++L + + G N T V+ C ++ RF +G+ VH ++ +I
Sbjct: 33 KAGRLREAIQLLGIIKQRGLLVNSNTYGCVIEHCAKARRFEDGKMVHKQLDELGVEIDIY 92
Query: 256 LDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGT 315
L +LI+ YSK + V A++VF M R++V W++MI + + P + F + +
Sbjct: 93 LGNSLINFYSKFEDVASAEQVFRRMTLRDVVTWSSMIAAYAGNNHPAKAFDTFERMTD-- 150
Query: 316 VAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAE 375
+I P+ ITF+ ++ AC +L +GRK ++ ++ + A + +Y+
Sbjct: 151 ---ANIEPNRITFLSILKACNNYSILEKGRK-IHTIVKAMGMETDVAVATALITMYSKCG 206
Query: 376 LTEEAEEILRKMPEDN 391
A E+ KM E N
Sbjct: 207 EISVACEVFHKMTERN 222
>gi|449451667|ref|XP_004143583.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Cucumis sativus]
gi|449504924|ref|XP_004162332.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Cucumis sativus]
Length = 595
Score = 279 bits (714), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 162/488 (33%), Positives = 254/488 (52%), Gaps = 13/488 (2%)
Query: 1 MKQLLQIQAHLITSGLFFNNSFWTINL-LKHSADFGSPDYTVLVFKCINNPGTFCVNAVI 59
MKQL QIQA +I + + T L L S G Y VF I +P TF NA+I
Sbjct: 1 MKQLKQIQAQMIKTAIITEPKLATKFLTLCTSPHVGDLLYAQRVFNGITSPNTFMWNAII 60
Query: 60 KAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVD 119
+AYSNS P+ + Y QM+ + NSYTF L +C + HGL +K G
Sbjct: 61 RAYSNSDEPELAFLSYQQMLSSSVPHNSYTFPFLLRACRNLLAMGEALQVHGLVIKLGFG 120
Query: 120 FELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIM 179
++ +N+L+++Y G + CAR +F + RD +SWN ++ G+++SGD+ A+ +F M
Sbjct: 121 SDVFALNALLHVYALCGEIHCARQLFDNIPERDAVSWNIMIDGYIKSGDVKTAYGVFLDM 180
Query: 180 PERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGR 239
P +NVVSW +ISG ++G +L L EM +GF + +AS+LTAC ++GR
Sbjct: 181 PLKNVVSWTSLISGLVEAGQSVEALSLCYEMQNAGFELDGVAIASLLTACANLGALDQGR 240
Query: 240 SVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMA--DRNLVCWNAMILGHCI 297
+H Y + + + ++ AL+++Y KC +E A VF + +++ W AMI G I
Sbjct: 241 WLHFYVLNNGVDVDRVIGCALVNMYVKCGDMEEALSVFGKLKGNQKDVYIWTAMIDGFAI 300
Query: 298 HGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKI 357
HG+ E ++ F + I P+ ITF V+ AC L+ EG++ F+ M FY +
Sbjct: 301 HGRGVEALEWFNRMRR-----EGIRPNSITFTAVLRACSYGGLVEEGKELFKSMKCFYNV 355
Query: 358 KPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMV 417
P+ HY CM +L + +EA+E+++KMP M +++W +LL C +
Sbjct: 356 NPSIEHYGCMVDLLGRSGRLDEAKELIKKMP-----MKPSAVIWGALLKACWIHRDFLLG 410
Query: 418 ERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLKEV 477
++ V++D RY L + A G+W++ A VR MK + PG V L +
Sbjct: 411 SQVGAHLVEVDSDHSGRYIQLATILAAEGKWKEAAEVRLKMKSLGVPISPGKSSVTLNGI 470
Query: 478 VEKLKVGH 485
V + GH
Sbjct: 471 VHEFLAGH 478
>gi|449439619|ref|XP_004137583.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g74630-like [Cucumis sativus]
gi|449487109|ref|XP_004157499.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g74630-like [Cucumis sativus]
Length = 642
Score = 278 bits (712), Expect = 4e-72, Method: Compositional matrix adjust.
Identities = 164/521 (31%), Positives = 272/521 (52%), Gaps = 51/521 (9%)
Query: 1 MKQLLQIQAHLITSGLFFNNSFWTIN--LLKHSADFGSPD---YTVLVFKCINNPGTFCV 55
++ + QIQA + + L NS+ ++ LL H A PD Y +F I NP F
Sbjct: 18 LRTVKQIQALIFKTCL---NSYPLVSGKLLLHCA-VTLPDSLHYARRLFLDIRNPDVFMY 73
Query: 56 NAVIKAYSNSCVPDQGVVFYLQMIKNGF-MPNSYTFVSLFGSCAKTGCVERGGMCHGLAL 114
N +I+ S+S P + +++M + +P+S++F L + A + G H LA+
Sbjct: 74 NTLIRGLSDSDTPSNALQLFVEMRRKSVALPDSFSFAFLLKAAANCRALTNGLQLHCLAV 133
Query: 115 KNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHE 174
G+D L V +LI+MY + AR +F +M ++++WN+IV+ R + A +
Sbjct: 134 GYGLDSHLFVGTTLISMYAECACLVFARKVFDEMIEPNIVAWNAIVAACFRCEGVKDAEQ 193
Query: 175 LFDIMPERNVVSWNIMISGYSKSG-------------------------------NPGCS 203
+F MP RN+ SWNIM++GY+K+G N +
Sbjct: 194 VFRCMPIRNLTSWNIMLAGYTKAGELQLAREVFMKMPLKDDVSWSTMIVGFAHNGNFNDA 253
Query: 204 LKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDL 263
FRE+ + G R N+ ++ VL+AC ++ F GR +HG+ ++ I ++ ALID
Sbjct: 254 FAFFREVRREGMRPNEVSLTGVLSACAQAGAFEFGRILHGFVEKSGFLQIISVNNALIDT 313
Query: 264 YSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISP 323
YSKC +++A+ VFD+M R+ V W AMI G +HG EE I+LF + +I P
Sbjct: 314 YSKCGNLDMARLVFDNMLRRSAVSWTAMIAGMAMHGYGEEAIRLFNEMEE-----SNIKP 368
Query: 324 DEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEI 383
D ITFI ++ AC A L+ G YF +M++ Y I+P HY CM +LY A ++A +
Sbjct: 369 DSITFISILYACSHAGLVDLGCSYFSRMVNTYGIEPVIEHYGCMVDLYGRAGKLQQAYDF 428
Query: 384 LRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYA 443
+ +MP +S I+W +LL C G + + ++ + ++DP++ + L N+YA
Sbjct: 429 VCQMP-----ISPNDIVWRTLLGACSIHGNLYLAGQVKRQLSELDPENSGDHVLLSNIYA 483
Query: 444 VAGQWEDVARVRELMKKRRMGRMPGCRLVDLKEVVEKLKVG 484
VAG+W+DVA +R M +R+ + PG ++++ ++ G
Sbjct: 484 VAGKWKDVAALRRSMTHQRLKKTPGWSMIEVNRIIYSFVAG 524
>gi|357154895|ref|XP_003576937.1| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
mitochondrial-like [Brachypodium distachyon]
Length = 661
Score = 278 bits (711), Expect = 5e-72, Method: Compositional matrix adjust.
Identities = 143/419 (34%), Positives = 235/419 (56%), Gaps = 12/419 (2%)
Query: 58 VIKAYSNSCVPDQG-VVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKN 116
++ Y+ + D+ VF ++ G PN T V++ + + G + G M +
Sbjct: 213 LVDGYARRGLADEAWRVFCRMVVAGGLQPNEVTLVAVVSAMGQMGLLAFGRMVYRYVADG 272
Query: 117 GVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELF 176
GV + + N+LI+M+G FG AR +F M+ +D+ SW ++V+ + + GD+ +A LF
Sbjct: 273 GVGRSVNLENALIDMFGKFGCAASAREVFDSMAVKDVYSWTTMVNAYAKCGDLESAARLF 332
Query: 177 DIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFN 236
D MP RN VSW+ MI+ YS++ P +++LF+ M++ G + + SVL+AC + +
Sbjct: 333 DDMPRRNAVSWSCMIAAYSQANQPEEAVRLFKAMIEEGVEPINAGLVSVLSACAQLGCLD 392
Query: 237 EGRSVH-GYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGH 295
GR ++ Y + + L A ID+Y+KC + A ++F MA+RN+V WN+MI+ H
Sbjct: 393 LGRWIYDNYVISGKAVLTVNLGNAFIDVYAKCGDFDAASKLFAEMAERNVVSWNSMIMAH 452
Query: 296 CIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFY 355
+HG+ EE ++LF L G I PDEITF+G++ AC + L++EGR+YF++M Y
Sbjct: 453 AVHGQSEEVLRLFEQL-----KGTCIVPDEITFLGLLSACSHSGLVSEGRRYFKEMKLIY 507
Query: 356 KIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVA 415
I+P HY CM +L L EEA E+ + MP + D W +LL+ CR G V
Sbjct: 508 GIEPKSEHYACMIDLLGKIGLLEEAFEVAKGMPMETDEAG-----WGALLNACRMYGNVE 562
Query: 416 MVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDL 474
+ E A V ++P D Y + +YA +W+ V +R LM++R + + PGC +++
Sbjct: 563 IGEFAADKLVQLNPLDSGIYVLMSQIYASKNKWDQVKILRVLMRERGVKKNPGCSSIEV 621
Score = 107 bits (267), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 93/381 (24%), Positives = 160/381 (41%), Gaps = 75/381 (19%)
Query: 3 QLLQIQAHLITSGLFFNNSFWTINLLKHSADFGSP--DYTVLVFKCINNPGTFCVNAVIK 60
+ LQ+ A L SGL + F LL A P D+ + + P + + +++
Sbjct: 52 RFLQLHALLTVSGLA-AHRFPASRLLAFCALSTPPRVDHAAAILARASAPNAYMLATMMR 110
Query: 61 AYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCA---KTGCVERGGMCHGLALKNG 117
A+ + +P + + ++I+ ++ T V + A + G H +ALK G
Sbjct: 111 AFLRARLPSRASALFRRVIRESLPADARTLVFAIKAAASEHEHHSPSGGEGVHCVALKWG 170
Query: 118 -VDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELF 176
V + V N+L++ Y ++ ARN LF
Sbjct: 171 HVAQSVLVGNALVHFYANHRSLAHARN-------------------------------LF 199
Query: 177 DIMPERNVVSWNIMISGYSKSGNPGCSLKLF-REMMKSGFRGNDKTMASVLTACGRSARF 235
D MP+R+VVSW ++ GY++ G + ++F R ++ G + N+ T+ +V++A G+
Sbjct: 200 DEMPDRDVVSWTTLVDGYARRGLADEAWRVFCRMVVAGGLQPNEVTLVAVVSAMGQMGLL 259
Query: 236 NEGRSVHGYTVRTSLKPNIILDTALIDL-------------------------------Y 264
GR V+ Y + ++ L+ ALID+ Y
Sbjct: 260 AFGRMVYRYVADGGVGRSVNLENALIDMFGKFGCAASAREVFDSMAVKDVYSWTTMVNAY 319
Query: 265 SKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPD 324
+KC +E A R+FD M RN V W+ MI + +PEE ++LF A++ V P
Sbjct: 320 AKCGDLESAARLFDDMPRRNAVSWSCMIAAYSQANQPEEAVRLFKAMIEEGV-----EPI 374
Query: 325 EITFIGVICACVRAELLTEGR 345
+ V+ AC + L GR
Sbjct: 375 NAGLVSVLSACAQLGCLDLGR 395
>gi|255570475|ref|XP_002526196.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223534500|gb|EEF36200.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 491
Score = 278 bits (710), Expect = 6e-72, Method: Compositional matrix adjust.
Identities = 153/476 (32%), Positives = 260/476 (54%), Gaps = 12/476 (2%)
Query: 1 MKQLLQIQAHLITSGLFFN--NSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAV 58
+ Q+ QIQ HL SG + + I+ S++ S + +F + + TF N V
Sbjct: 23 ISQIKQIQTHLTVSGTLKDPYAAAKIISFCALSSNQFSLSHAYRLFLGLRHRSTFIWNTV 82
Query: 59 IKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGV 118
I+A++ P + ++ + M+ + F+PN+YT+ LF +C + G CH ++K G
Sbjct: 83 IRAFAEKNEPRKAIMLFKNMLYSNFLPNNYTYSFLFKACTDLNNLYLGLACHCQSIKLGW 142
Query: 119 DFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDI 178
+F V N L++M+ FG MD AR +F S RD+I+W ++++G+VR+G + ELFD
Sbjct: 143 EFYDFVQNGLVHMFAIFGCMDSARKLFDLSSNRDVITWTALINGYVRAGQVLIGRELFDK 202
Query: 179 MPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEG 238
MPERN VSW+ MI+GY + G +L+LF M+ SGF N + + AC ++G
Sbjct: 203 MPERNSVSWSAMITGYVRVGFFEEALELFNAMLISGFWPNHAGIVCAINACASLGALDQG 262
Query: 239 RSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIH 298
R +H Y R + + ++ ALID+Y+KC +E+A +F + +R++ + +I G H
Sbjct: 263 RWIHCYIKRNRMDLDRVMGAALIDMYAKCGCIEIACSIFGELRNRDVHVYTCLISGLANH 322
Query: 299 GKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIK 358
G+ ++LF + + V P+E+TF+ V+ AC R L+ +G + F M Y +
Sbjct: 323 GQSATAVELFERMHSEGVV-----PNEVTFVSVLNACSRMGLVDKGLRIFENMSKIYGDE 377
Query: 359 PNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVE 418
P HY C+ +L A EEA++++++MP M +S + +LL+ R G V + E
Sbjct: 378 PQVQHYGCLVDLLGRAGKLEEAKKLVKEMP-----MKPDSYVLGALLNASRVYGDVELGE 432
Query: 419 RLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDL 474
+S + + L N+YA A +W++VARVR M +++ ++PGC L+ +
Sbjct: 433 ETVESLAQLSLDHSGVHVVLSNMYASANKWDEVARVRRGMGDKKVRKVPGCSLIKV 488
>gi|449467271|ref|XP_004151347.1| PREDICTED: pentatricopeptide repeat-containing protein At2g42920,
chloroplastic-like [Cucumis sativus]
gi|449530724|ref|XP_004172343.1| PREDICTED: pentatricopeptide repeat-containing protein At2g42920,
chloroplastic-like [Cucumis sativus]
Length = 543
Score = 278 bits (710), Expect = 6e-72, Method: Compositional matrix adjust.
Identities = 156/486 (32%), Positives = 261/486 (53%), Gaps = 13/486 (2%)
Query: 1 MKQLLQIQAHLITSGLFFNNSFWTINLLKHSAD-FGSPDYTVLVFKCINNPGTFCVNAVI 59
M+ L Q AHLI SG SF +L A G+ DY LVF + NP F N VI
Sbjct: 37 MRDLQQFHAHLIKSGQAIE-SFAASRILAFCASPLGNMDYAYLVFLQMQNPNLFSWNTVI 95
Query: 60 KAYSNSCVPDQGVVFYLQM-IKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGV 118
+ +S S P + ++ M + + P T+ S+F + ++ G G HG +K G+
Sbjct: 96 RGFSQSSNPQIALYLFIDMLVSSQVEPQRLTYPSIFKAYSQLGLAHDGAQLHGRIIKLGL 155
Query: 119 DFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDI 178
F+ + N+++ MY G + AR +F Q D++SWNS++ G + G++ + +LFD
Sbjct: 156 QFDPFIRNTILYMYATGGFLSEARRIFNQEMEFDVVSWNSMILGLAKCGEIDESRKLFDK 215
Query: 179 MPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEG 238
MP +N +SWN MI GY ++G +LKLF +M + + ++ TM S+L A + +G
Sbjct: 216 MPVKNPISWNSMIGGYVRNGMFKEALKLFIKMQEERIQPSEFTMVSLLNASAQIGALRQG 275
Query: 239 RSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIH 298
+H Y + +L+ N I+ TA+ID+Y KC + A +VF+ + R+L WN+MI G ++
Sbjct: 276 VWIHEYIKKNNLQLNAIVVTAIIDMYCKCGSIGNALQVFEKIPCRSLSSWNSMIFGLAVN 335
Query: 299 GKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIK 358
G +E I +F L S+ PD I+F+ V+ AC ++ EG ++F +M + Y+I+
Sbjct: 336 GCEKEAILVFKML-----ESSSLKPDCISFMAVLTACNHGAMVDEGMEFFSRMKNTYRIE 390
Query: 359 PNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVE 418
P+ HY M ++ + A EEAE+ ++ MP + D +I+W LLS CR G M +
Sbjct: 391 PSIKHYNLMVDMISRAGFLEEAEQFIKTMPIEKD-----AIIWGCLLSACRIYGNTEMAK 445
Query: 419 RLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLKEVV 478
R A+ ++DP++ Y + N++A + R M+ +++ + PG +++ E V
Sbjct: 446 RAAEKVNELDPEETMGYVLMANIHAWGNNFVGAMEKRVAMRMKKVEKEPGGSFIEVDEEV 505
Query: 479 EKLKVG 484
+ G
Sbjct: 506 HEFIAG 511
>gi|224064340|ref|XP_002301427.1| predicted protein [Populus trichocarpa]
gi|222843153|gb|EEE80700.1| predicted protein [Populus trichocarpa]
Length = 442
Score = 278 bits (710), Expect = 6e-72, Method: Compositional matrix adjust.
Identities = 141/408 (34%), Positives = 235/408 (57%), Gaps = 12/408 (2%)
Query: 78 MIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGA 137
M+ G PN TF LF +CA + G + H +K+G DF++ + +L++MY G
Sbjct: 1 MLLKGCPPNELTFTFLFPACASFYSLLHGKVIHTHFIKSGFDFDVYALTALVDMYAKLGV 60
Query: 138 MDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKS 197
+ AR +F +M+ RD+ +WNS+++G+ RSGDM A ELF +MP R+VVSW MISGYS++
Sbjct: 61 LMLARQVFDEMTVRDIPTWNSLIAGYSRSGDMEGALELFKLMPSRSVVSWTTMISGYSQN 120
Query: 198 GNPGCSLKLFREMMKSG-FRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIIL 256
G +L++F +M K R N+ T+ASV +AC + G + Y L N+ +
Sbjct: 121 GMYTKALEMFLKMEKDKEVRPNEVTIASVFSACAKLGALEVGERIESYARDNGLMKNLYV 180
Query: 257 DTALIDLYSKCQKVEVAQRVFDSMAD-RNLVCWNAMILGHCIHGKPEEGIKLFTALVNGT 315
L+++Y++C K++ A+ VF+ + RNL WN+M++G +HG+ E ++L+ ++
Sbjct: 181 SNTLLEMYARCGKIDAARHVFNEIGKRRNLCSWNSMMMGLAVHGRSNEALQLYDQML--- 237
Query: 316 VAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAE 375
G I PD++TF+G+I AC L+ +G + F+ M + I P HY CM +L A
Sbjct: 238 --GEGIEPDDVTFVGLILACTHGGLVAKGWQLFQSMETNFSIVPKLEHYGCMVDLLGRAG 295
Query: 376 LTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRY 435
+EA ++++ MP M +S++W +LL C F V E A+S ++P + Y
Sbjct: 296 ELQEAYDLVKSMP-----MKPDSVIWGTLLGACSFHSNVEFAEIAAESLFQVEPWNPGNY 350
Query: 436 QFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLKEVVEKLKV 483
L N+YA A +W+ VA++R+LMK ++ + G +++ + + K V
Sbjct: 351 VILCNIYASAQRWDGVAKLRKLMKGGQITKAAGYSVIEGEGEIHKFIV 398
Score = 45.4 bits (106), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 62/280 (22%), Positives = 118/280 (42%), Gaps = 22/280 (7%)
Query: 6 QIQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCV-NAVIKAYSN 64
+I+++ +GL N + + LL+ A G D VF I C N+++ +
Sbjct: 164 RIESYARDNGLM-KNLYVSNTLLEMYARCGKIDAARHVFNEIGKRRNLCSWNSMMMGLAV 222
Query: 65 SCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERG-GMCHGLALKNGVDFELP 123
++ + Y QM+ G P+ TFV L +C G V +G + + + +L
Sbjct: 223 HGRSNEALQLYDQMLGEGIEPDDVTFVGLILACTHGGLVAKGWQLFQSMETNFSIVPKLE 282
Query: 124 VMNSLINMYGCFGAMDCARNMFVQMSPR-DLISWNSIVSG-----HVRSGDMSAAHELFD 177
++++ G G + A ++ M + D + W +++ +V ++ AA LF
Sbjct: 283 HYGCMVDLLGRAGELQEAYDLVKSMPMKPDSVIWGTLLGACSFHSNVEFAEI-AAESLFQ 341
Query: 178 IMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNE 237
+ P N ++ I+ + Y+ + KL R++MK G + A G S E
Sbjct: 342 VEP-WNPGNYVILCNIYASAQRWDGVAKL-RKLMKGG---------QITKAAGYSVIEGE 390
Query: 238 GRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVF 277
G +H + V P AL++ S K+++ + F
Sbjct: 391 GE-IHKFIVEDKSHPRHYEIYALLNEISTKMKLQITEDDF 429
>gi|356561762|ref|XP_003549147.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At5g66520-like [Glycine max]
Length = 622
Score = 278 bits (710), Expect = 7e-72, Method: Compositional matrix adjust.
Identities = 166/489 (33%), Positives = 264/489 (53%), Gaps = 18/489 (3%)
Query: 1 MKQLLQIQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIK 60
M+Q+ Q A LIT+ L + + N L A S Y +F I P F N +IK
Sbjct: 29 MQQIKQTHAQLITTALISHPV--SANKLLKLAACASLSYAHKLFDQIPQPDLFIYNTMIK 86
Query: 61 AYS---NSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNG 117
A+S +SC + +VF G PN Y+FV F +C V+ G A+K G
Sbjct: 87 AHSLSPHSC-HNSLIVFRSLTQDLGLFPNRYSFVFAFSACGNGLGVQEGEQVRIHAVKVG 145
Query: 118 VDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFD 177
++ + V+N+LI MYG +G + ++ +F RDL SWN++++ +V SG+MS A ELFD
Sbjct: 146 LENNVFVVNALIGMYGKWGLVGESQKVFQWAVDRDLYSWNTLIAAYVGSGNMSLAKELFD 205
Query: 178 IMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNE 237
M ER+VVSW+ +I+GY + G +L F +M++ G + N+ T+ S L AC ++
Sbjct: 206 GMRERDVVSWSTIIAGYVQVGCFMEALDFFHKMLQIGPKPNEYTLVSALAACSNLVALDQ 265
Query: 238 GRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRV-FDSMADRNLVCWNAMILGHC 296
G+ +H Y + +K N L ++ID+Y+KC ++E A RV F+ + + WNAMI G
Sbjct: 266 GKWIHAYIGKGEIKMNERLLASIIDMYAKCGEIESASRVFFEHKVKQKVWLWNAMIGGFA 325
Query: 297 IHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYK 356
+HG P E I +F + ISP+++TFI ++ AC ++ EG+ YFR M+ Y
Sbjct: 326 MHGMPNEAINVFEQM-----KVEKISPNKVTFIALLNACSHGYMVEEGKLYFRLMVSDYA 380
Query: 357 IKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAM 416
I P HY CM +L + + L +EAE+++ MP M+ + +W +LL+ CR +
Sbjct: 381 ITPEIEHYGCMVDLLSRSGLLKEAEDMISSMP-----MAPDVAIWGALLNACRIYKDMER 435
Query: 417 VERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMK-KRRMGRMPGCRLVDLK 475
R+ + MDP + L N+Y+ +G+W + +RE + R ++PGC ++LK
Sbjct: 436 GYRIGRIIKGMDPNHIGCHVLLSNIYSTSGRWNEARILREKNEISRDRKKIPGCSSIELK 495
Query: 476 EVVEKLKVG 484
+ VG
Sbjct: 496 GTFHQFLVG 504
>gi|222640201|gb|EEE68333.1| hypothetical protein OsJ_26615 [Oryza sativa Japonica Group]
Length = 983
Score = 277 bits (709), Expect = 8e-72, Method: Compositional matrix adjust.
Identities = 148/450 (32%), Positives = 248/450 (55%), Gaps = 15/450 (3%)
Query: 56 NAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVE--RGGM--CHG 111
NA+I+A + S P + Y +++ G P +T SL S A + V RG H
Sbjct: 175 NALIRALAGSARPHLALPLYAHLLRAGHHPTPHTLPSLLKSLALSPAVPGARGLALAVHA 234
Query: 112 LALKNGVDFELPVMNSLINMY-GCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMS 170
A+K G+ L V N+LI ++ G G + A + + D ++N++++ + R+G ++
Sbjct: 235 HAVKLGLAGFLLVSNALIRVHAGILGRLSDALVLLRTAASVDASTFNTLITAYARAGRVT 294
Query: 171 AAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACG 230
A LFD MP RN VSW+ M++GY ++G+ +L LF M G R +D + VL AC
Sbjct: 295 DARALFDEMPARNAVSWSAMVNGYVQAGDGREALGLFARMQADGVRPDDTVLVGVLAACA 354
Query: 231 RSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNA 290
+ +G+ VHGY +++ + L TAL+D+Y+KC ++++A VF M ++N++ W
Sbjct: 355 QLGVLEQGKWVHGYLKANNIRITVFLGTALVDMYAKCGEMQLAMEVFKVMKEKNVLAWTT 414
Query: 291 MILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQ 350
MI G +HG+ E ++LF+ + V PD+I FIG +CAC L+ +GR+ F
Sbjct: 415 MIKGLAMHGRGSEALELFSQMERLGV-----KPDDIAFIGALCACTHTGLVDKGRELFDS 469
Query: 351 MIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRF 410
M+ Y IKP HY CM +L A L EA E++ KMP M ++++W +L++ CRF
Sbjct: 470 MVRKYGIKPKIEHYGCMVDLLARNGLLNEAREMVEKMP-----MKPDALIWGALMAGCRF 524
Query: 411 QGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCR 470
V + E + K +++++P Y L N+YA +G+ +R LM+++ + + PGC
Sbjct: 525 HKNVELAEYVVKHWIELEPDKSGAYVLLGNIYAASGRHASAREIRHLMREKGVDKTPGCS 584
Query: 471 LVDLKEVVEKLKVGHFWRGGMKEEVNKMME 500
V++K V+ + VG ++E ++K E
Sbjct: 585 TVEIKGVIHQFIVGDLSHPFIEEILSKWDE 614
>gi|147807930|emb|CAN62155.1| hypothetical protein VITISV_032407 [Vitis vinifera]
Length = 585
Score = 277 bits (708), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 161/547 (29%), Positives = 275/547 (50%), Gaps = 75/547 (13%)
Query: 3 QLLQIQAHLITSGLFFNNSFWTINLLKHSADFG-SPDYTVLVFKCINNPGTFCVNAVIKA 61
Q+LQI A LIT+ L +++F LL + +Y LVF I+ P +F N ++K
Sbjct: 26 QILQIHAQLITTNLI-SDTFAASRLLDSVVSKTLNVNYAELVFAQIHQPNSFICNTMVKC 84
Query: 62 YSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFE 121
Y+ S P++ + FY +M K G + ++YT+ + +C + GG+ G A+K G +
Sbjct: 85 YTESSTPERALRFYAEMRKKGLLGDNYTYPFVLKACGAMCGLLEGGLVQGEAVKRGFGGD 144
Query: 122 LPVM-------------------------------NSLINMYGCFGAMDCARNMFVQMS- 149
+ V+ NS++ Y G M+ A+NMF +M
Sbjct: 145 VFVVNGLISMYCRCGETGWARAVFDGFSEKDLVSWNSMLGGYVWCGEMENAQNMFDEMPE 204
Query: 150 -------------------------------PRDLISWNSIVSGHVRSGDMSAAHELFDI 178
RDL+SWNS++ G+ + G+M A E+FB
Sbjct: 205 RDVVSWSIMIDGYGKKMGEVNRARVFFDSMPTRDLVSWNSMIDGYAKVGEMEVAREIFBK 264
Query: 179 MPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEG 238
M ++NV+SW+IMI GY+ + +L LFR+M+ G + + ++ ++AC + ++G
Sbjct: 265 MLQKNVISWSIMIDGYAXHRDSKEALNLFRQMLCQGIKPDRVSVVGAVSACSQLGALDQG 324
Query: 239 RSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIH 298
R +H Y R + +I++ TAL+D+Y KC + A+ +F+SM +RN+V WN MI+G ++
Sbjct: 325 RWIHLYMKRNRMLLDIVVQTALVDMYLKCGSXDEARXIFNSMPERNVVSWNVMIVGLGMN 384
Query: 299 GKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIK 358
G +E ++ F + I D++ F+GV+ AC A L+TEG F QM Y+++
Sbjct: 385 GFGKEALECFXQM-----EMERIPMDDLLFLGVLMACSHANLVTEGLHIFNQMKGVYRLE 439
Query: 359 PNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVE 418
P HY C+ +L A ++ + I++ MP M + +W SLL CR V + E
Sbjct: 440 PKLEHYGCLVDLLGRAGQLDQIQNIIQSMP-----MKPNAALWGSLLLACRIHQNVTLAE 494
Query: 419 RLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLKEVV 478
+ + ++ D Y + N+YA G WE + R+R+LMK+R+M + G ++++ V
Sbjct: 495 IVVERLAELKADDSGVYVLMSNIYADVGMWEGMLRIRKLMKERKMKKDIGRSVIEVDGNV 554
Query: 479 EKLKVGH 485
E+ G
Sbjct: 555 EEFVSGE 561
>gi|356513796|ref|XP_003525595.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g29230-like [Glycine max]
Length = 595
Score = 277 bits (708), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 176/549 (32%), Positives = 270/549 (49%), Gaps = 82/549 (14%)
Query: 1 MKQLLQIQAHLITSGLFFNNSFWTINLLK---HSADFGSPDYTVLVFKCINNPGTFCVNA 57
+ +L Q+ + LI SGL + F T + K HS F P T L F +++P F N
Sbjct: 20 LHELNQVLSQLIVSGLSQHPLFATSAIKKLCSHSVTF--PRATFL-FDHLHHPDAFHCNT 76
Query: 58 VIKAYSNSC-VPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKN 116
+I+AY+ P +Y +M+ PN YTF L C G G H +K
Sbjct: 77 IIRAYARKPDFPAALRFYYCKMLARSVPPNHYTFPLLIKVCTDIGSFREGLKGHARIVKF 136
Query: 117 GVDFELPVMNSLINMYGCFG-------------------------------AMDCARNMF 145
G +L NSLI MY FG + AR +F
Sbjct: 137 GFGSDLFARNSLIRMYSVFGRIGNARMVFDESCWLDLVSYNSMIDGYVKNGEIGAARKVF 196
Query: 146 VQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLK 205
+M RD++SWN +++G+V GD+ AA+ELF+ +PER+ VSWN MI G ++ GN ++K
Sbjct: 197 NEMPDRDVLSWNCLIAGYVGVGDLDAANELFETIPERDAVSWNCMIDGCARVGNVSLAVK 256
Query: 206 LFREM--------------------------------MKSGFRG--NDKTMASVLTACGR 231
F M M G N+ T+ SVLTAC
Sbjct: 257 FFDRMPAAVRNVVSWNSVLALHARVKNYGECLMLFGKMVEGREAVPNEATLVSVLTACAN 316
Query: 232 SARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAM 291
+ + G VH + ++KP+++L T L+ +Y+KC +++A+ VFD M R++V WN+M
Sbjct: 317 LGKLSMGMWVHSFIRSNNIKPDVLLLTCLLTMYAKCGAMDLAKGVFDEMPVRSVVSWNSM 376
Query: 292 ILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQM 351
I+G+ +HG ++ ++LF + P++ TFI V+ AC A ++ EG YF M
Sbjct: 377 IMGYGLHGIGDKALELFLEM-----EKAGQQPNDATFISVLSACTHAGMVMEGWWYFDLM 431
Query: 352 IDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQ 411
YKI+P HY CM +L A A L E +EE++R +P + S +W +LLS C
Sbjct: 432 QRVYKIEPKVEHYGCMVDLLARAGLVENSEELIRMVP-----VKAGSAIWGALLSGCSNH 486
Query: 412 GAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRL 471
+ E +AK F++++PQD Y L N+YA G+W+DV VR ++K++ + + L
Sbjct: 487 LDSELGEIVAKRFIELEPQDIGPYILLSNMYAAKGRWDDVEHVRLMIKEKGLQKEAASSL 546
Query: 472 VDLKEVVEK 480
V L++ K
Sbjct: 547 VHLEDFESK 555
>gi|115475551|ref|NP_001061372.1| Os08g0249600 [Oryza sativa Japonica Group]
gi|113623341|dbj|BAF23286.1| Os08g0249600 [Oryza sativa Japonica Group]
Length = 951
Score = 276 bits (707), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 148/450 (32%), Positives = 248/450 (55%), Gaps = 15/450 (3%)
Query: 56 NAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVE--RGGM--CHG 111
NA+I+A + S P + Y +++ G P +T SL S A + V RG H
Sbjct: 175 NALIRALAGSARPHLALPLYAHLLRAGHHPTPHTLPSLLKSLALSPAVPGARGLALAVHA 234
Query: 112 LALKNGVDFELPVMNSLINMY-GCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMS 170
A+K G+ L V N+LI ++ G G + A + + D ++N++++ + R+G ++
Sbjct: 235 HAVKLGLAGFLLVSNALIRVHAGILGRLSDALVLLRTAASVDASTFNTLITAYARAGRVT 294
Query: 171 AAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACG 230
A LFD MP RN VSW+ M++GY ++G+ +L LF M G R +D + VL AC
Sbjct: 295 DARALFDEMPARNAVSWSAMVNGYVQAGDGREALGLFARMQADGVRPDDTVLVGVLAACA 354
Query: 231 RSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNA 290
+ +G+ VHGY +++ + L TAL+D+Y+KC ++++A VF M ++N++ W
Sbjct: 355 QLGVLEQGKWVHGYLKANNIRITVFLGTALVDMYAKCGEMQLAMEVFKVMKEKNVLAWTT 414
Query: 291 MILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQ 350
MI G +HG+ E ++LF+ + V PD+I FIG +CAC L+ +GR+ F
Sbjct: 415 MIKGLAMHGRGSEALELFSQMERLGV-----KPDDIAFIGALCACTHTGLVDKGRELFDS 469
Query: 351 MIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRF 410
M+ Y IKP HY CM +L A L EA E++ KMP M ++++W +L++ CRF
Sbjct: 470 MVRKYGIKPKIEHYGCMVDLLARNGLLNEAREMVEKMP-----MKPDALIWGALMAGCRF 524
Query: 411 QGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCR 470
V + E + K +++++P Y L N+YA +G+ +R LM+++ + + PGC
Sbjct: 525 HKNVELAEYVVKHWIELEPDKSGAYVLLGNIYAASGRHASAREIRHLMREKGVDKTPGCS 584
Query: 471 LVDLKEVVEKLKVGHFWRGGMKEEVNKMME 500
V++K V+ + VG ++E ++K E
Sbjct: 585 TVEIKGVIHQFIVGDLSHPFIEEILSKWDE 614
>gi|297810761|ref|XP_002873264.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297319101|gb|EFH49523.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 624
Score = 276 bits (707), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 149/482 (30%), Positives = 252/482 (52%), Gaps = 15/482 (3%)
Query: 7 IQAHLITSGLFFNNSFWTINLLKHSADFGSPD----YTVLVFKCINNPGTFCVNAVIKAY 62
++ HLI S +F + + L + F P Y +F I NP F N +I+ +
Sbjct: 36 LRTHLI-SDVFVASRLLALALCVDDSTFHKPTNLLGYAYGIFSQIQNPNLFVFNVLIRCF 94
Query: 63 SNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFEL 122
S P + FY QM+K+ P++ TF L + + CV G H ++ G ++
Sbjct: 95 STGAEPSKAFGFYTQMLKSRIWPDNITFPFLIKASTEMECVVVGEQTHSQIVRFGFQNDV 154
Query: 123 PVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPER 182
V NSL++MY G + A +F QM RD++SW S+V+G+ + G + A E+FD MP R
Sbjct: 155 YVENSLVHMYANCGLIAAAGRIFGQMPFRDVVSWTSMVAGYCKCGMVEDAREMFDEMPHR 214
Query: 183 NVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVH 242
N+ +W+IMI+GY+K+ ++ LF M + G N+ M SV+++C G H
Sbjct: 215 NLFTWSIMINGYAKNNCFEKAIDLFELMKREGVVANETVMVSVISSCAHLGALEFGERAH 274
Query: 243 GYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPE 302
Y V++ + N+IL TAL+D+Y +C ++E A RVF+ + D++ + W+++I G +HG
Sbjct: 275 EYVVKSHMTVNLILGTALVDMYWRCGEIEKAIRVFEELPDKDSLSWSSIIKGLAVHGHAH 334
Query: 303 EGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFA 362
+ I F+ +V SP +IT V+ AC L+ +G + + M Y I+P
Sbjct: 335 KAIHYFSQMVR-----LGFSPRDITLTAVLSACSHGGLVDKGLEIYENMKRDYGIEPRLE 389
Query: 363 HYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAK 422
HY C+ ++ A EAE + KMP + + + +LL C+ + ER+
Sbjct: 390 HYGCIVDMLGRAGKLAEAENFILKMPVKPN-----APILGALLGACKIYKNTEVAERVGN 444
Query: 423 SFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLKEVVEKLK 482
+++ P+ Y L N+YA AGQWE + +R++MK++ + + PG L+++ + K
Sbjct: 445 MLIEVKPEHSGYYVLLSNIYACAGQWEKLESLRDIMKEKLVKKPPGWSLIEIDGKINKFS 504
Query: 483 VG 484
+G
Sbjct: 505 MG 506
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 54/249 (21%), Positives = 108/249 (43%), Gaps = 31/249 (12%)
Query: 224 SVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDL---------YSKCQKVEVAQ 274
++L +C + F++ + +HG+ +RT L ++ + + L+ L + + A
Sbjct: 17 ALLQSC---SSFSDLKIIHGFLLRTHLISDVFVASRLLALALCVDDSTFHKPTNLLGYAY 73
Query: 275 RVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICA 334
+F + + NL +N +I +P + +T ++ I PD ITF +I A
Sbjct: 74 GIFSQIQNPNLFVFNVLIRCFSTGAEPSKAFGFYTQMLK-----SRIWPDNITFPFLIKA 128
Query: 335 CVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNM 394
E + G + Q++ F + + + ++YA L A I +MP
Sbjct: 129 STEMECVVVGEQTHSQIVRF-GFQNDVYVENSLVHMYANCGLIAAAGRIFGQMP------ 181
Query: 395 SFESIM-WVSLLS-LCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVA 452
F ++ W S+++ C+ MVE + F +M ++ + ++N YA +E
Sbjct: 182 -FRDVVSWTSMVAGYCK----CGMVEDAREMFDEMPHRNLFTWSIMINGYAKNNCFEKAI 236
Query: 453 RVRELMKKR 461
+ ELMK+
Sbjct: 237 DLFELMKRE 245
>gi|449445033|ref|XP_004140278.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g20230-like [Cucumis sativus]
Length = 679
Score = 276 bits (707), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 160/473 (33%), Positives = 251/473 (53%), Gaps = 15/473 (3%)
Query: 6 QIQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSNS 65
Q+ AH++ GL + ++ A G D +V VF I P + N++I+AY+
Sbjct: 91 QVHAHMLLRGLQ-PTALVGSKMVAFYASSGDIDSSVSVFNGIGEPSSLLFNSMIRAYARY 149
Query: 66 CVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVM 125
++ V Y M GF + +TF + S + V G HGL L+ G+ F+L V
Sbjct: 150 GFAERTVATYFSMHSWGFTGDYFTFPFVLKSSVELLSVWMGKCVHGLILRIGLQFDLYVA 209
Query: 126 NSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVV 185
SLI +YG G ++ A +F M+ RD+ SWN++++G+ +SG + AA +F+ MP RN+V
Sbjct: 210 TSLIILYGKCGEINDAGKVFDNMTIRDVSSWNALLAGYTKSGCIDAALAIFERMPWRNIV 269
Query: 186 SWNIMISGYSKSGNPGCSLKLFREMMK--SGFRGNDKTMASVLTACGRSARFNEGRSVHG 243
SW MISGYS+SG +L LF EM+K SG R N T+ SVL AC + + GR +H
Sbjct: 270 SWTTMISGYSQSGLAQQALSLFDEMVKEDSGVRPNWVTIMSVLPACAQLSTLERGRQIHE 329
Query: 244 YTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSM--ADRNLVCWNAMILGHCIHGKP 301
R L N + AL +Y+KC + A+ FD + ++NL+ WN MI + +G
Sbjct: 330 LACRMGLNSNASVLIALTAMYAKCGSLVDARNCFDKLNRNEKNLIAWNTMITAYASYGHG 389
Query: 302 EEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNF 361
+ + F ++ I PD+ITF G++ C + L+ G KYF M Y I P
Sbjct: 390 LQAVSTFREMIQ-----AGIQPDDITFTGLLSGCSHSGLVDVGLKYFNHMSTTYSINPRV 444
Query: 362 AHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLA 421
HY C+A+L A EA +++ +MP M +W SLL+ CR + M E A
Sbjct: 445 EHYACVADLLGRAGRLAEASKLVGEMP-----MPAGPSIWGSLLAACRKHRNLEMAETAA 499
Query: 422 KSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDL 474
+ ++P++ Y L N+YA AG+W++V ++R ++K + + PGC +++
Sbjct: 500 RKLFVLEPENTGNYVLLSNMYAEAGRWQEVDKLRAIVKSQGTKKSPGCSWIEI 552
>gi|449442683|ref|XP_004139110.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Cucumis sativus]
gi|449516005|ref|XP_004165038.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Cucumis sativus]
Length = 609
Score = 276 bits (707), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 163/488 (33%), Positives = 253/488 (51%), Gaps = 16/488 (3%)
Query: 2 KQLLQIQAHLITSGLFFNNSFWTINLLKH-SADFGSPDYTVLVFKCINNPGTFCVNAVIK 60
+Q+ Q+ A LIT+GL + T LLK S+ F Y +VF P F N +IK
Sbjct: 15 RQIKQVHARLITTGLILH-PIPTNKLLKQLSSIFAPISYAHMVFDHFPQPDLFLYNTIIK 73
Query: 61 --AYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGV 118
A+S + D F + + +PN Y+F F C V G A+K G+
Sbjct: 74 VLAFSTTSSADSFTKFRSLIREERLVPNQYSFAFAFKGCGSGVGVLEGEQVRVHAIKLGL 133
Query: 119 DFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDI 178
+ L V N+LI MY + AR +F RD+ SWN ++SG+ R G M A +LFD
Sbjct: 134 ENNLFVTNALIGMYVNLDFVVDARKVFDWSPNRDMYSWNIMLSGYARLGKMDEARQLFDE 193
Query: 179 MPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEG 238
MPE++VVSW MISG + G +L +F M+ G N+ T+AS L AC ++G
Sbjct: 194 MPEKDVVSWTTMISGCLQVGYFMEALDIFHNMLAKGMSPNEYTLASSLAACANLVALDQG 253
Query: 239 RSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDS--MADRNLVCWNAMILGHC 296
R +H Y + +++ N L LID+Y+KC ++E A ++F+S R + WNAMI G
Sbjct: 254 RWMHVYIKKNNIQMNERLLAGLIDMYAKCGELEFASKLFNSNPRLKRKVWPWNAMIGGFA 313
Query: 297 IHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYK 356
+HGK +E I++F + +SP+++TF+ ++ AC + EGR YF M Y+
Sbjct: 314 VHGKSKEAIEVFEQM-----KIEKVSPNKVTFVALLNACSHGNRVEEGRYYFESMASHYR 368
Query: 357 IKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAM 416
+KP HY C+ +L A +EAEEI+ M +++ + +W +LLS C+ M
Sbjct: 369 VKPELEHYGCLVDLLGRAGRLKEAEEIISSM-----HLTPDVAIWGALLSACKIHKDAEM 423
Query: 417 VERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLKE 476
ER+ K ++DP + L N+Y++ G W + +RE + + + PGC ++L
Sbjct: 424 GERVGKIVKELDPNHLGCHVLLANIYSLTGNWNEARTLREKIAESGKKKTPGCSSIELNG 483
Query: 477 VVEKLKVG 484
+ + VG
Sbjct: 484 MFHQFLVG 491
>gi|356561464|ref|XP_003549001.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g49142-like [Glycine max]
Length = 673
Score = 276 bits (707), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 162/514 (31%), Positives = 256/514 (49%), Gaps = 47/514 (9%)
Query: 17 FFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYL 76
F N I L++ A G P VF I N +I++Y N+ + D ++ +
Sbjct: 63 FHENPSLGIKLMRAYAARGEPGLARNVFDVIPERNVIFYNVMIRSYMNNHLYDDALLVFR 122
Query: 77 QMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFG 136
M+ GF P+ YT+ + +C+ + + G HG K G+D L V N LI +YG G
Sbjct: 123 DMVSGGFSPDHYTYPCVLKACSCSDNLRIGLQLHGAVFKVGLDLNLFVGNGLIALYGKCG 182
Query: 137 AMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAA------------------------ 172
+ AR + +M +D++SWNS+V+G+ ++ A
Sbjct: 183 CLPEARCVLDEMQSKDVVSWNSMVAGYAQNMQFDDALDICREMDGVRQKPDACTMASLLP 242
Query: 173 -------------HELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGND 219
E+F + ++++VSWN+MIS Y K+ PG S+ L+ +M K +
Sbjct: 243 AVTNTSSENVLYVEEMFMNLEKKSLVSWNVMISVYMKNSMPGKSVDLYLQMGKCEVEPDA 302
Query: 220 KTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDS 279
T ASVL ACG + GR +H Y R L PN++L+ +LID+Y++C +E A+RVFD
Sbjct: 303 ITCASVLRACGDLSALLLGRRIHEYVERKKLCPNMLLENSLIDMYARCGCLEDAKRVFDR 362
Query: 280 MADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAE 339
M R++ W ++I + + G+ + LFT + N SPD I F+ ++ AC +
Sbjct: 363 MKFRDVASWTSLISAYGMTGQGYNAVALFTEMQN-----SGQSPDSIAFVAILSACSHSG 417
Query: 340 LLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESI 399
LL EG+ YF+QM D YKI P H+ C+ +L + +EA I+++MP M
Sbjct: 418 LLNEGKFYFKQMTDDYKITPIIEHFACLVDLLGRSGRVDEAYNIIKQMP-----MKPNER 472
Query: 400 MWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMK 459
+W +LLS CR + + A + + P++ Y L N+YA AG+W +V +R LMK
Sbjct: 473 VWGALLSSCRVYSNMDIGILAADKLLQLAPEESGYYVLLSNIYAKAGRWTEVTAIRSLMK 532
Query: 460 KRRMGRMPGCRLVDLKEVVEKLKVGHFWRGGMKE 493
+RR+ +MPG V+L V G + KE
Sbjct: 533 RRRIRKMPGISNVELNNQVHTFLAGDTYHPQSKE 566
Score = 41.2 bits (95), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 48/97 (49%), Gaps = 5/97 (5%)
Query: 239 RSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIH 298
++VH S N L L+ Y+ + +A+ VFD + +RN++ +N MI + +
Sbjct: 52 KNVHSKVFNLSFHENPSLGIKLMRAYAARGEPGLARNVFDVIPERNVIFYNVMIRSYMNN 111
Query: 299 GKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICAC 335
++ + +F +V+ G SPD T+ V+ AC
Sbjct: 112 HLYDDALLVFRDMVS-----GGFSPDHYTYPCVLKAC 143
>gi|359491803|ref|XP_002269228.2| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Vitis vinifera]
Length = 550
Score = 276 bits (706), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 172/504 (34%), Positives = 257/504 (50%), Gaps = 54/504 (10%)
Query: 3 QLLQIQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVL-----VFKCINNPGTFCVNA 57
L Q AHLI SGL ++ F LL +A SP + L +F +NP F N
Sbjct: 26 HLHQAHAHLIVSGLA-SHPFTVTRLLACAAL--SPSASDLPHAKTIFLHTHNPSPFMFNT 82
Query: 58 VIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNG 117
+I A S + V FY+ M+ G P+++TF L S + + G H +K G
Sbjct: 83 IIMASSRTL---DSVTFYVCMLHAGHFPDNFTFPFLIKSSSASPTSLLGHQLHAHVVKFG 139
Query: 118 VDFELPVMNSLINMYGCFGAMDCARNMFVQ-MSPRDLISWNSIVSGHVRSGDMSAAHELF 176
+D ++ V+N++I +Y F + AR +F + S D++SW ++++G SG + A ++F
Sbjct: 140 LDRDVFVVNNMIALYSSFRELRSARKVFDESYSLVDVVSWTTLITGFSNSGQIDEARKIF 199
Query: 177 DIMPERNVVSWNIMISGYSKSGNPGCSLKLFREM----------MKSGFRG--------- 217
D+MP +N VSWN MISGY+ S + KLF EM M SG+
Sbjct: 200 DLMPLKNTVSWNAMISGYAGSSRINEARKLFDEMPDRDAASWSAMVSGYSQLGMCNEALD 259
Query: 218 -------------NDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLY 264
N+ + S ++AC + EGR +H Y L+ N+ L T L+D+Y
Sbjct: 260 LFMEMVTGDKMIPNEAALVSAVSACAQLRALEEGRWLHSYIKEKKLRINVTLGTVLLDMY 319
Query: 265 SKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPD 324
KC + A VF+ M++RN+ WN+MI G ++G +E + LF + G SP+
Sbjct: 320 GKCGSILDAAGVFNLMSERNVNSWNSMIAGLALNGCGKEALALFWKM---QFVGP--SPN 374
Query: 325 EITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEIL 384
ITFI ++ C + L+TEGR F M Y IKP HY CM +L A L +EA + +
Sbjct: 375 AITFIALLTGCSHSGLITEGRWLFSMMTQVYGIKPQLKHYGCMVDLLGRAGLVKEALDFV 434
Query: 385 RKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAV 444
KMP M S +W +L+ CR G V + E L K +D++P RY L N++A
Sbjct: 435 EKMP-----MKPHSELWGALVGACRIHGQVELGEELGKRLIDLEPHHGGRYALLCNIFAA 489
Query: 445 AGQWEDVARVRELMKKRRMGRMPG 468
A +W+DVA VR+L K R++ + PG
Sbjct: 490 AQRWDDVAMVRDLEKGRKVLKNPG 513
>gi|225457427|ref|XP_002282084.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g74630-like [Vitis vinifera]
Length = 643
Score = 276 bits (705), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 164/536 (30%), Positives = 274/536 (51%), Gaps = 48/536 (8%)
Query: 1 MKQLLQIQAHLITSGLFFNNSFWTINLLKHSADFGSPD---YTVLVFKCINNPGTFCVNA 57
+K L Q+ A++ +GL + LL HSA PD Y +F NP F N
Sbjct: 18 LKNLKQVHAYVCKTGLD-TDPIIAGKLLLHSA-VSVPDALDYARRLFLHFPNPDVFMHNT 75
Query: 58 VIKAYSNSCVPDQGVVFYLQMIKNGFMP-NSYTFVSLFGSCAKTGCVERGGMCHGLALKN 116
+I+ + S P ++ +++M + P +S++F L + A +E G H A+ +
Sbjct: 76 LIRGLAESDTPQNSLITFVEMRRRLTAPLDSFSFAFLLKAAASYRSLESGIQLHCQAIVH 135
Query: 117 GVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELF 176
G+D L V +L++MY G + A+ +F +M ++++WN++V+ R GD+ A +F
Sbjct: 136 GLDTHLFVGTTLVSMYSECGFVAFAKKVFEEMFEPNVVAWNAVVTACFRCGDVKGADMMF 195
Query: 177 DIMPERNVVSWNIMISGYSKSGNPGCSLKL------------------------------ 206
+ MP RN+ SWN+M++GY+K+G + KL
Sbjct: 196 NRMPFRNLTSWNVMLAGYTKAGELELARKLFLEMPVKDDVSWSTMIVGFAHNGFFYEAFG 255
Query: 207 -FREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYS 265
FRE+ + G R N+ ++ L+AC + G+ +HG+ ++ + ++ AL+D YS
Sbjct: 256 FFRELQQVGMRPNEVSLTGALSACADAGAIEFGKILHGFIEKSGFLWMVSVNNALLDTYS 315
Query: 266 KCQKVEVAQRVFDSMAD-RNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPD 324
KC V +A+ VF+ M + R++V W +MI G +HG EE I+LF + I PD
Sbjct: 316 KCGNVGMARLVFERMPEKRSIVSWTSMIAGLAMHGYGEEAIQLFHEMEE-----SGIRPD 370
Query: 325 EITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEIL 384
I FI ++ AC A L+ +G +YF +M D Y I+P HY CM +LY A ++A E +
Sbjct: 371 GIAFISILYACSHAGLIEKGYEYFYKMKDIYNIEPAIEHYGCMVDLYGRAGQLDKAYEFI 430
Query: 385 RKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAV 444
MP + +I+W +LL C G V + ER+ + ++DP + + L N+YAV
Sbjct: 431 IHMP-----VLPTAIIWRTLLGACSIHGNVKLAERVKERLSELDPNNSGDHVLLSNIYAV 485
Query: 445 AGQWEDVARVRELMKKRRMGRMPGCRLVDLKEVVEKLKVGHFWRGGMKEEVNKMME 500
AG+W+DVA VR M +RM + PG ++++ +++ G +E K+ E
Sbjct: 486 AGKWKDVAAVRRSMTDQRMNKTPGWSMIEVDKIMYSFVAGEVQNSITEEAYEKLKE 541
>gi|242051881|ref|XP_002455086.1| hypothetical protein SORBIDRAFT_03g004125 [Sorghum bicolor]
gi|241927061|gb|EES00206.1| hypothetical protein SORBIDRAFT_03g004125 [Sorghum bicolor]
Length = 627
Score = 276 bits (705), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 161/479 (33%), Positives = 256/479 (53%), Gaps = 14/479 (2%)
Query: 7 IQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSNSC 66
+ AH++ G+ N + + ++A LV +C + P + NA+I ++
Sbjct: 45 VHAHVVRLGMGRNAHVASSLVAAYTAGGDGAAARALVGEC-DTPVAW--NALISGHNRGG 101
Query: 67 VPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAK-TGCVERGGMCHGLALKNGVDFELPVM 125
+ ++ M + G P T+VS+ +C K T V G HG + +GV +L V
Sbjct: 102 RFGESCGSFVDMARAGAAPTPVTYVSVLSACGKGTRDVLLGMQVHGRVVGSGVLPDLRVE 161
Query: 126 NSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVV 185
N+L++MY M A +F M R ++SW S++SG R G + A +LFD MPER+ V
Sbjct: 162 NALVDMYAECADMGSAWKVFDGMQVRSVVSWTSLLSGLARLGQVDEARDLFDRMPERDTV 221
Query: 186 SWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYT 245
SW MI GY + +L++FREM S ++ TM SV+TAC + G V Y
Sbjct: 222 SWTAMIDGYVWAARFREALEMFREMQYSNVSADEFTMVSVITACAQLGALEMGEWVRVYM 281
Query: 246 VRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGI 305
R +K + + ALID+YSKC +E A VF M R+ W A+ILG ++G EE I
Sbjct: 282 SRQGIKMDAFVGNALIDMYSKCGSIERALDVFKGMHHRDKFTWTAIILGLAVNGYEEEAI 341
Query: 306 KLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYW 365
++F ++ S +PDE+TFIGV+ AC A L+ +GR++F MI+ Y I PN HY
Sbjct: 342 EMFHRMIR-----VSETPDEVTFIGVLTACTHAGLVDKGREFFLSMIEAYNIAPNVVHYG 396
Query: 366 CMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFV 425
C+ +L A EA + + +MP M+ S +W +LL+ CR G + E +A+ +
Sbjct: 397 CIIDLLGRAGKITEALDTIDQMP-----MTPNSTIWGTLLAACRVHGNSEIGELVAERLL 451
Query: 426 DMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLKEVVEKLKVG 484
++DP++ Y L N+YA +WEDV R+R + ++ + + PGC L+++ ++ + G
Sbjct: 452 ELDPENSMVYILLSNIYAKCNRWEDVRRLRHAIMEKGIKKEPGCSLIEMDGIIHEFVAG 510
>gi|297797141|ref|XP_002866455.1| hypothetical protein ARALYDRAFT_496347 [Arabidopsis lyrata subsp.
lyrata]
gi|297312290|gb|EFH42714.1| hypothetical protein ARALYDRAFT_496347 [Arabidopsis lyrata subsp.
lyrata]
Length = 1401
Score = 276 bits (705), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 153/476 (32%), Positives = 252/476 (52%), Gaps = 20/476 (4%)
Query: 1 MKQLLQIQAHLITSGLF---------FNNSFWTINLLKHSADFGSP--DYTVLVFKCINN 49
+K L Q A ITSG F N + I + SA + Y V + I N
Sbjct: 431 LKHLHQFHAQFITSGRISSSLNQNSVFANVLFAITSISPSASTSNVVVSYATSVLRFITN 490
Query: 50 PGTFCVNAVIKAYS-NSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCA--KTGCVERG 106
P TFC N +I+ Y+ + + F+++M + P+ +T+ +F +CA K G +
Sbjct: 491 PSTFCFNTIIRIYTLHEPLSLSSQRFFVEMRRRSVPPDFHTYPFVFKACAAKKNGDLSLV 550
Query: 107 GMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRS 166
H AL+ G+ +L +N+LI Y + A +F + RD++++N ++ G V++
Sbjct: 551 KTLHCQALRFGLLSDLFTLNTLIRAYSLMAPIGSALQLFDENPQRDVVTYNVLIDGLVKA 610
Query: 167 GDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVL 226
++ A ELFD MP R++VSWN +I+GY++ ++ LF EM+ G + ++ + S L
Sbjct: 611 CEIVRARELFDSMPFRDLVSWNSLIAGYAQMNQCREAISLFDEMIGLGLKPDNVAIVSTL 670
Query: 227 TACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLV 286
+AC +S +G+++H YT + L + L T L+D Y+KC ++ A +F +D+ L
Sbjct: 671 SACAQSGDLEKGKAIHDYTKKKRLFIDSFLATGLVDFYAKCGFIDTAMEIFHLSSDKTLF 730
Query: 287 CWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRK 346
WNAMI G +HG E + F +V+ I PD ++FI V+ C + L+ E RK
Sbjct: 731 TWNAMITGLAMHGNGELTVDYFHKMVS-----SGIKPDGVSFISVLVGCSHSGLVGEARK 785
Query: 347 YFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLS 406
F QM Y + HY CMA+L A L EEA E++ +MP+D + + W LL
Sbjct: 786 LFDQMRSLYDVDREMKHYGCMADLLGRAGLIEEAAEMIEQMPKDGGKRE-KLLAWSGLLG 844
Query: 407 LCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRR 462
CR G + + E+ AK + P+D Y+ ++ +YA A +WEDV +VRE++++ +
Sbjct: 845 GCRIHGNIEVAEKAAKRVKALSPEDGGVYKVMVEMYANAERWEDVVKVREMIERDK 900
>gi|225431281|ref|XP_002268784.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g44230-like [Vitis vinifera]
Length = 647
Score = 275 bits (704), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 158/509 (31%), Positives = 270/509 (53%), Gaps = 24/509 (4%)
Query: 1 MKQLLQIQAHLITSGLFFNNSFWTINLLKHSADFGSP--DYTVLVFKCINNPGTFCVNAV 58
+ Q+ Q+ AH+ GL F LL+ P Y LVF+ + P F A+
Sbjct: 52 INQVKQVHAHIFRKGLE-QCCFVLAKLLRTLTKLDVPMDPYPRLVFQQVEYPNPFLWTAL 110
Query: 59 IKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLA-LKNG 117
I+ Y+ + V+ Y M + G P S+TF +L +C+ V G H L G
Sbjct: 111 IRGYALQGPFMESVLLYNSMRRQGIGPVSFTFTALLKACSAALDVNLGRQVHTQTILIGG 170
Query: 118 VDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFD 177
+L V N+LI+MY G + C +F +M RD+ISW S++ + + G+M AA ELFD
Sbjct: 171 FGSDLYVGNTLIDMYVKCGCLGCGHRVFDEMLDRDVISWTSLIVAYAKVGNMEAASELFD 230
Query: 178 IMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNE 237
+P +++V+W M++GY+++ P +L++F M +G + ++ T+ V++AC +
Sbjct: 231 GLPMKDMVAWTAMVTGYAQNARPREALEVFERMQAAGVKTDEVTLVGVISACAQLGAAKY 290
Query: 238 GRSVHGYTVRTSLKP--NIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGH 295
V ++ P N+++ +ALID+Y+KC VE A +VF+ M +RN+ +++MI+G
Sbjct: 291 ANWVRDVAEQSGFGPTSNVVVGSALIDMYAKCGSVEDAYKVFERMEERNVYSYSSMIVGF 350
Query: 296 CIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFY 355
+HG ++LF ++ I P+ +TFIGV+ AC A ++ +G++ F M + +
Sbjct: 351 AMHGLAGAAMELFDEMLK-----TEIKPNRVTFIGVLTACSHAGMVEQGQQLFAMMEECH 405
Query: 356 KIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVA 415
+ P+ HY CM +L A EEA +++ MP M+ +W +LL CR G
Sbjct: 406 GVAPSEDHYACMVDLLGRAGRLEEALNLVKMMP-----MNPHGGVWGALLGACRIHGNPD 460
Query: 416 MVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLK 475
M + A +++P Y L N+YA AG+W+DV++VR+LM+ + + + PGC V+ K
Sbjct: 461 MAQIAASHLFELEPNGIGNYILLSNIYASAGRWDDVSKVRKLMRAKGLKKNPGCSWVEGK 520
Query: 476 EVVEKLKVGHFWRGGMKE----EVNKMME 500
+ + + F+ G M E+ + +E
Sbjct: 521 KGI----IHEFFAGDMSHPKSREIKQALE 545
>gi|147806113|emb|CAN65480.1| hypothetical protein VITISV_030746 [Vitis vinifera]
Length = 686
Score = 275 bits (704), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 165/540 (30%), Positives = 257/540 (47%), Gaps = 74/540 (13%)
Query: 2 KQLLQIQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKA 61
KQ+ QIQA +I +G F N + T L+ A Y +F I +P N++ +
Sbjct: 115 KQVHQIQAQIIANG-FQYNEYITPKLVTICATLKRMTYARQLFDQIPDPNIALWNSMFRG 173
Query: 62 YSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFE 121
Y+ S + V + QM PN +TF + SC K + G H +K G
Sbjct: 174 YAQSESYREVVFLFFQMKGMDIRPNCFTFPVVLKSCGKINALIEGEQVHCFLIKCGFRGN 233
Query: 122 LPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPE 181
V +LI+MY G + A +F +M R++++W S+++G++ S D+ +A LFD+ PE
Sbjct: 234 PFVGTTLIDMYSAGGTVGDAYKIFCEMFERNVVAWTSMINGYILSADLVSARRLFDLAPE 293
Query: 182 RNVVSWNIMISG-------------------------------YSKSGNPGCSLKLFREM 210
R+VV WNIM+SG Y+ +GN LF EM
Sbjct: 294 RDVVLWNIMVSGYIEGGDMVEARKLFXEMPNRDVMFWNTVLKGYATNGNVEALEGLFEEM 353
Query: 211 --------------------------------MKSGFRGNDKTMASVLTACGRSARFNEG 238
+S ND T+ +VL+AC R + G
Sbjct: 354 PERNIFSWNALIGGYAHNGLFFEVLGSFKRMLSESDVPPNDATLVTVLSACARLGALDLG 413
Query: 239 RSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIH 298
+ VH Y + LK N+ + AL+D+Y+KC +E A VF M ++L+ WN +I G +H
Sbjct: 414 KWVHVYAESSGLKGNVYVGNALMDMYAKCGIIENAISVFRGMDTKDLISWNTLIGGLAMH 473
Query: 299 GKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIK 358
+ + + LF + N PD ITFIG++CAC L+ +G YF+ M D Y I
Sbjct: 474 SRGADALNLFFQMKN-----AGQKPDGITFIGILCACTHMGLVEDGFAYFQSMADDYLIM 528
Query: 359 PNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVE 418
P HY CM ++ A A E+A +RKMP + D ++W LL CR V + E
Sbjct: 529 PQIEHYGCMVDMLARAGRLEQAXAFVRKMPVEAD-----GVIWAGLLGACRIYKNVELAE 583
Query: 419 RLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLKEVV 478
+ ++++P++ + Y L N+Y AG+WEDVAR++ M+ ++PGC L+++ + V
Sbjct: 584 LALQRLIELEPKNPANYVMLSNIYGDAGRWEDVARLKVAMRDTGFKKLPGCSLIEVNDAV 643
>gi|297734524|emb|CBI15771.3| unnamed protein product [Vitis vinifera]
Length = 436
Score = 275 bits (704), Expect = 4e-71, Method: Compositional matrix adjust.
Identities = 150/434 (34%), Positives = 244/434 (56%), Gaps = 16/434 (3%)
Query: 78 MIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGA 137
M++NG +P++Y+F + +CA+ + +G H LK GV ++ V N+LI+ + GA
Sbjct: 1 MLRNGTLPDNYSFPFVLKACARLSLLHKGREIHSSTLKLGVHLDVFVQNALISAFSSCGA 60
Query: 138 MDCARNMFVQMSP---RDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGY 194
++ AR +F M P RD++SWNS++SG+++S A ++FD +P RN V W MI+GY
Sbjct: 61 VEAARAVF-DMLPALVRDVVSWNSMISGYLQSHRYELALKVFDRIPHRNTVCWTSMIAGY 119
Query: 195 SKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNI 254
++S +++LFREM GF + T+A VL+ACG +GR +H Y R S++ ++
Sbjct: 120 AQSDLFKEAIELFREMQIGGFAADAATIACVLSACGHWGALAQGRWIHLYCERNSIEMDL 179
Query: 255 ILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNG 314
ALI +YSKC ++ A +F + ++ W+A+I G ++G+ ++ + LF+ +
Sbjct: 180 NARNALIGMYSKCGDIQKALEIFHGLTQPDIFSWSAVISGLAMNGESDKALHLFSQMEMI 239
Query: 315 TVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGA 374
+ I P+EITF+GV+CAC + +G YF M Y + P HY CM +L A
Sbjct: 240 S----DIRPNEITFLGVLCACNHGGFVDKGLYYFNAMTQIYNLTPGIEHYGCMVDLLGRA 295
Query: 375 ELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSR 434
L EAE+ +R +P D ++W SLL CR G + + E AK +++P+
Sbjct: 296 NLLVEAEKFIRTLPIQPD-----VVIWRSLLFACRNHGNIELAEFAAKQIEELEPRRCGA 350
Query: 435 YQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLKEVVEKLKVG---HFWRGGM 491
L NVYA A +W DV RVR+ M +R+ + PGC V++ +V +L V H G +
Sbjct: 351 RVLLSNVYASASRWGDVKRVRKDMATQRIKKQPGCSFVEIDGLVHELFVADRSHPEMGAI 410
Query: 492 KEEVNKMMECRQSR 505
E + + + QS+
Sbjct: 411 YETMISINKALQSK 424
Score = 73.6 bits (179), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 58/262 (22%), Positives = 108/262 (41%), Gaps = 32/262 (12%)
Query: 43 VFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGC 102
VF I + T C ++I Y+ S + + + + +M GF ++ T + +C G
Sbjct: 100 VFDRIPHRNTVCWTSMIAGYAQSDLFKEAIELFREMQIGGFAADAATIACVLSACGHWGA 159
Query: 103 VERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSG 162
+ +G H +N ++ +L N+LI MY G + A +F ++ D+ SW++++SG
Sbjct: 160 LAQGRWIHLYCERNSIEMDLNARNALIGMYSKCGDIQKALEIFHGLTQPDIFSWSAVISG 219
Query: 163 HVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTM 222
+G+ A LF M M S R N+ T
Sbjct: 220 LAMNGESDKALHLFSQME------------------------------MISDIRPNEITF 249
Query: 223 ASVLTACGRSARFNEG-RSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMA 281
VL AC ++G + T +L P I ++DL + + A++ ++
Sbjct: 250 LGVLCACNHGGFVDKGLYYFNAMTQIYNLTPGIEHYGCMVDLLGRANLLVEAEKFIRTLP 309
Query: 282 DR-NLVCWNAMILGHCIHGKPE 302
+ ++V W +++ HG E
Sbjct: 310 IQPDVVIWRSLLFACRNHGNIE 331
>gi|356545826|ref|XP_003541335.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Glycine max]
Length = 607
Score = 275 bits (703), Expect = 4e-71, Method: Compositional matrix adjust.
Identities = 166/492 (33%), Positives = 266/492 (54%), Gaps = 24/492 (4%)
Query: 1 MKQLLQIQAHLITSGLFFNNS-----FWTINLLKHSADFGSPDYTVLVFKCINNPGTFCV 55
M ++ Q + L+ GL NN F +L KH G +Y + +F + NP TF
Sbjct: 15 MAEVKQQHSLLLRLGLSTNNHAMSRIFTFCSLSKH----GDINYALKLFTTLPNPDTFLY 70
Query: 56 NAVIKAY-SNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLAL 114
N + KA+ S S P ++FY M+++ PN++TF SL +C E H L
Sbjct: 71 NTLFKAFFSLSQTPSLSLLFYSHMLQHCVTPNAFTFPSLIRACKLE---EEAKQLHAHVL 127
Query: 115 KNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHE 174
K G + +N+LI++Y FG++D AR +F MS +++SW S+VSG+ + G + A
Sbjct: 128 KFGFGGDTYALNNLIHVYFAFGSLDDARRVFCTMSDPNVVSWTSLVSGYSQWGLVDEAFR 187
Query: 175 LFDIMP-ERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDK-TMASVLTACGRS 232
+F++MP ++N VSWN MI+ + K + LFR M D+ A++L+AC
Sbjct: 188 VFELMPCKKNSVSWNAMIACFVKGNRFREAFALFRRMRVEKKMELDRFVAATMLSACTGV 247
Query: 233 ARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMI 292
+G +H Y +T + + L T +ID+Y KC ++ A VF + + + WN MI
Sbjct: 248 GALEQGMWIHKYVEKTGIVLDSKLATTIIDMYCKCGCLDKAFHVFCGLKVKRVSSWNCMI 307
Query: 293 LGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMI 352
G +HGK E+ I+LF + + ++PD ITF+ V+ AC + L+ EG YFR M+
Sbjct: 308 GGFAMHGKGEDAIRLFKEMEEEAM----VAPDSITFVNVLTACAHSGLVEEGWYYFRYMV 363
Query: 353 DFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQG 412
D + I P HY CM +L A A EEA++++ +MP MS ++ + +LL CR G
Sbjct: 364 DVHGIDPTKEHYGCMVDLLARAGRLEEAKKVIDEMP-----MSPDAAVLGALLGACRIHG 418
Query: 413 AVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLV 472
+ + E + +++DP++ RY L N+YA G+WE VA VR+LM R + + PG ++
Sbjct: 419 NLELGEEVGNRVIELDPENSGRYVILGNMYASCGKWEQVAGVRKLMDDRGVKKEPGFSMI 478
Query: 473 DLKEVVEKLKVG 484
+++ VV + G
Sbjct: 479 EMEGVVNEFVAG 490
>gi|224133790|ref|XP_002327681.1| predicted protein [Populus trichocarpa]
gi|222836766|gb|EEE75159.1| predicted protein [Populus trichocarpa]
Length = 654
Score = 275 bits (703), Expect = 5e-71, Method: Compositional matrix adjust.
Identities = 161/510 (31%), Positives = 270/510 (52%), Gaps = 26/510 (5%)
Query: 1 MKQLLQIQAHLITSGLFFNNSFWTI-NLLKHSADFGSP--DYTVLVFKCINNPGTFCVNA 57
+ Q+ Q+ A ++ +GL + S + + L++ P Y + +F +N P F NA
Sbjct: 59 LTQIKQVHARILLNGL--DQSCYVLAKLIRTLTKLNIPVDPYPLSIFNQVNYPNPFLYNA 116
Query: 58 VIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLA-LKN 116
+I+ Y + FY M K G +P S+TF +LF +C V G HG L
Sbjct: 117 LIRGYLIEERLKESTEFYSLMRKEGVVPVSFTFTALFKACGAKMDVGLGRQIHGQTILVG 176
Query: 117 GVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELF 176
G +L V NS+I+MY G ++C R +F +M RD+ISW ++S +V+SG+M +A ELF
Sbjct: 177 GFGEDLHVGNSMIDMYIKCGFLECGRKVFDEMPNRDVISWTELISAYVKSGNMESAGELF 236
Query: 177 DIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFN 236
D +P +++V+W +M+SG++++ P ++ F +M + G ++ T+ V++AC +
Sbjct: 237 DGLPVKDMVAWTVMVSGFAQNAKPREAIMFFEKMQEFGVETDEITLIGVISACAQLGAAK 296
Query: 237 EGRSVHGYTVRTSL--KPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILG 294
+ ++ K ++++ +ALID+YSKC V A RVF M +RN+ +++MILG
Sbjct: 297 YADWIRDVAEKSEFGGKHSVVVGSALIDMYSKCGSVGDAYRVFQGMKERNVYSYSSMILG 356
Query: 295 HCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDF 354
+HG+ + +KLF +V I P+ +TFIGV+ AC A ++ +G + F M
Sbjct: 357 FAMHGRVHDAMKLFDEMVK-----TEIKPNRVTFIGVLTACSHAGMVEQGWQIFELMEKC 411
Query: 355 YKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAV 414
Y IKP+ HY CM +L A +EA E+++ MP + +W +LL CR +
Sbjct: 412 YGIKPSADHYTCMVDLLGRAGRLQEAHELVKTMP-----IEPHGGVWGALLGACRIHKSP 466
Query: 415 AMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDL 474
+ A +++P Y L N+YA G+W DV+ VR+LM+ R + + P ++
Sbjct: 467 DIAAIAANHLFELEPYCIGNYILLANIYASCGRWNDVSTVRKLMRTRGLRKNPAFSWIE- 525
Query: 475 KEVVEKLKVGHFWRGGMKE----EVNKMME 500
EK V F+ G M E+ + +E
Sbjct: 526 ---SEKGMVHEFFSGDMTHPRSGEIKQALE 552
>gi|224116552|ref|XP_002331925.1| predicted protein [Populus trichocarpa]
gi|222874597|gb|EEF11728.1| predicted protein [Populus trichocarpa]
Length = 530
Score = 275 bits (703), Expect = 5e-71, Method: Compositional matrix adjust.
Identities = 149/478 (31%), Positives = 248/478 (51%), Gaps = 11/478 (2%)
Query: 4 LLQIQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAYS 63
L QI A +T GL F L+ A G+P VF I +P ++I Y
Sbjct: 19 LKQIHAQALTQGLLFIEQPLACKLVNRYAKLGNPRDAQKVFGYIQDPDRVTYTSLINLYL 78
Query: 64 NSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELP 123
++ +P + + +++ G P+S++ V +C K + G + HG+ + +
Sbjct: 79 STQLPIKAFSVFSKLVNEGLRPDSHSVVGALSACGKKQDLLNGKLVHGMIFRFQLGANSI 138
Query: 124 VMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERN 183
V N+LI+MY G + A+ +F QM +D+ SW S+++G V + +A +FD MP RN
Sbjct: 139 VGNALIDMYCRNGEIKIAQLVFKQMGIKDVSSWTSLLNGFVMCNGLESARRVFDEMPWRN 198
Query: 184 VVSWNIMISGYSKSGNPGCSLKLFREMMKSGF-RGNDKTMASVLTACGRSARFNEGRSVH 242
V+W MI+GY + G P L++FR+M G + T +VL+ C + G++VH
Sbjct: 199 DVAWTAMITGYVRGGMPIRGLEMFRQMKAEGENQPTVITAVAVLSGCADLGAHDHGQAVH 258
Query: 243 GYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPE 302
GY + +L + + AL+D+YSK VE A ++FD + +++ W MI H HGK
Sbjct: 259 GYISKVNLDKGVTVSNALMDMYSKGGCVESAMKIFDRLVKKDVFSWTTMISAHSSHGKGN 318
Query: 303 EGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFA 362
+++F ++ V P+++TF+ V+ C + LL E K F MI Y +P
Sbjct: 319 HALEVFYDMLESGVI-----PNDVTFLLVLSGCSHSGLLVEANKLFNGMIQCYGFEPKIE 373
Query: 363 HYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAK 422
HY CM +L A L EEA+E++ MP D D +++W SLLS C Q + + E K
Sbjct: 374 HYGCMVDLLCRAGLLEEAKELIDNMPMDPD-----AVIWRSLLSACMNQRNLGLAEIAGK 428
Query: 423 SFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLKEVVEK 480
++++P D Y L N+Y VA + +D ++R++M +++ + P C ++L VV +
Sbjct: 429 KIIELEPHDDGVYVLLSNIYHVANRMKDARKMRKMMGDQKVMKKPACSYIELNGVVHQ 486
>gi|224099171|ref|XP_002311390.1| predicted protein [Populus trichocarpa]
gi|222851210|gb|EEE88757.1| predicted protein [Populus trichocarpa]
Length = 594
Score = 275 bits (702), Expect = 5e-71, Method: Compositional matrix adjust.
Identities = 159/517 (30%), Positives = 266/517 (51%), Gaps = 47/517 (9%)
Query: 2 KQLLQIQAHLITSGLFFNNSFWTINLLKHSA--DFGSPDYTVLVFKCINNP-GTFCVNAV 58
K L+Q+ LI + L + LL ++ + GS +Y +F ++ P +F +
Sbjct: 45 KDLIQLHTLLIKTSLIKEKYAFGRLLLSFASFDNLGSLNYAQKLFDTVDIPRNSFMYTTM 104
Query: 59 IKAYSNSCVPDQGVVFYLQMI--KNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKN 116
IKAY+N P + FY +M+ + PN +TF +F +C+K V G H +K
Sbjct: 105 IKAYANFGNPREAFAFYSRMLCDQRYVYPNDFTFTYVFSACSKFNGVFEGKQAHAQMIKF 164
Query: 117 GVDFELPVMNSLINMYGCFGAMD-CARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHEL 175
+F + NSL++ YG G + R +F ++ D++SWN +++G+V+SGD+ A L
Sbjct: 165 PFEFGVHSWNSLLDFYGKVGEVGIVVRRVFDKIEGPDVVSWNCLINGYVKSGDLDEARRL 224
Query: 176 FDIMPERNVVSWNIMISGYSKSG----------------------------NPGC---SL 204
FD MPER+VVSW IM+ GY+ +G GC +L
Sbjct: 225 FDEMPERDVVSWTIMLVGYADAGFLSEASCLFDEMPKRNLVSWSALIKGYIQIGCYSKAL 284
Query: 205 KLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLY 264
+LF+EM + + ++ + ++L+AC R ++GR +H Y + +K + L TALID+Y
Sbjct: 285 ELFKEMQVAKVKMDEVIVTTLLSACARLGALDQGRWLHMYIDKHGIKVDAHLSTALIDMY 344
Query: 265 SKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPD 324
SKC ++++A +VF D+ + W++MI G +H E+ I+LF ++ I P
Sbjct: 345 SKCGRIDMAWKVFQETGDKKVFVWSSMIGGLAMHSFGEKAIELFAKMIE-----CGIEPS 399
Query: 325 EITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEIL 384
EIT+I ++ AC + L+ G + F +M++ K KP HY C+ +L A L +A ++
Sbjct: 400 EITYINILAACTHSGLVDVGLQIFNRMVENQKPKPRMQHYGCIVDLLGRAGLLHDAFRVV 459
Query: 385 RKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAV 444
MP D +W +LLS C+ V + E++ + + M+PQ+ Y NVYA
Sbjct: 460 ETMPVKAD-----PAIWRALLSACKLHRNVELGEQVGRILIKMEPQNDMNYVLFSNVYAA 514
Query: 445 AGQWEDVARVRELMKKRRMGRMPGCRLVDLKEVVEKL 481
+W+ ++R MK R M + PGC ++L V +
Sbjct: 515 VNRWDISGKLRREMKVRGMQKNPGCSSIELNGAVHEF 551
>gi|225423995|ref|XP_002279343.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Vitis vinifera]
Length = 623
Score = 275 bits (702), Expect = 5e-71, Method: Compositional matrix adjust.
Identities = 165/540 (30%), Positives = 257/540 (47%), Gaps = 74/540 (13%)
Query: 2 KQLLQIQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKA 61
KQ+ QIQA +I +G F N + T L+ A Y +F I +P N++ +
Sbjct: 52 KQVHQIQAQIIANG-FQYNEYITPKLVTICATLKRMTYARQLFDQIPDPNIALWNSMFRG 110
Query: 62 YSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFE 121
Y+ S + V + QM PN +TF + SC K + G H +K G
Sbjct: 111 YAQSESYREVVFLFFQMKGMDIRPNCFTFPVVLKSCGKINALIEGEQVHCFLIKCGFRGN 170
Query: 122 LPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPE 181
V +LI+MY G + A +F +M R++++W S+++G++ S D+ +A LFD+ PE
Sbjct: 171 PFVGTTLIDMYSAGGTVGDAYKIFCEMFERNVVAWTSMINGYILSADLVSARRLFDLAPE 230
Query: 182 RNVVSWNIMISG-------------------------------YSKSGNPGCSLKLFREM 210
R+VV WNIM+SG Y+ +GN LF EM
Sbjct: 231 RDVVLWNIMVSGYIEGGDMVEARKLFHEMPNRDVMFWNTVLKGYATNGNVEALEGLFEEM 290
Query: 211 --------------------------------MKSGFRGNDKTMASVLTACGRSARFNEG 238
+S ND T+ +VL+AC R + G
Sbjct: 291 PERNIFSWNALIGGYAHNGLFFEVLGSFKRMLSESDVPPNDATLVTVLSACARLGALDLG 350
Query: 239 RSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIH 298
+ VH Y + LK N+ + AL+D+Y+KC +E A VF M ++L+ WN +I G +H
Sbjct: 351 KWVHVYAESSGLKGNVYVGNALMDMYAKCGIIENAISVFRGMDTKDLISWNTLIGGLAMH 410
Query: 299 GKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIK 358
+ + + LF + N PD ITFIG++CAC L+ +G YF+ M D Y I
Sbjct: 411 SRGADALNLFFQMKN-----AGQKPDGITFIGILCACTHMGLVEDGFAYFQSMADDYLIM 465
Query: 359 PNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVE 418
P HY CM ++ A A E+A +RKMP + D ++W LL CR V + E
Sbjct: 466 PQIEHYGCMVDMLARAGRLEQAMAFVRKMPVEAD-----GVIWAGLLGACRIYKNVELAE 520
Query: 419 RLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLKEVV 478
+ ++++P++ + Y L N+Y AG+WEDVAR++ M+ ++PGC L+++ + V
Sbjct: 521 LALQRLIELEPKNPANYVMLSNIYGDAGRWEDVARLKVAMRDTGFKKLPGCSLIEVNDAV 580
Score = 49.3 bits (116), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 53/273 (19%), Positives = 111/273 (40%), Gaps = 22/273 (8%)
Query: 191 ISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSL 250
I + G CS ++ K R ++ S+L +C S + ++ + +
Sbjct: 10 IKPFDPPGGKSCSTEIDYLAPKPPHRLLEERFISLLQSCKTSKQVHQ---IQAQIIANGF 66
Query: 251 KPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTA 310
+ N + L+ + + +++ A+++FD + D N+ WN+M G+ E + LF
Sbjct: 67 QYNEYITPKLVTICATLKRMTYARQLFDQIPDPNIALWNSMFRGYAQSESYREVVFLFFQ 126
Query: 311 LVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDF-YKIKPNFAHYWCMAN 369
+ G I P+ TF V+ +C + L EG + +I ++ P + +
Sbjct: 127 M-----KGMDIRPNCFTFPVVLKSCGKINALIEGEQVHCFLIKCGFRGNPFVGT--TLID 179
Query: 370 LYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDP 429
+Y+ +A +I +M E N + W S+++ + RL D+ P
Sbjct: 180 MYSAGGTVGDAYKIFCEMFERN------VVAWTSMINGYILSADLVSARRL----FDLAP 229
Query: 430 Q-DFSRYQFLLNVYAVAGQWEDVARVRELMKKR 461
+ D + +++ Y G + ++ M R
Sbjct: 230 ERDVVLWNIMVSGYIEGGDMVEARKLFHEMPNR 262
>gi|15239979|ref|NP_201453.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75171133|sp|Q9FJY7.1|PP449_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g66520
gi|10177533|dbj|BAB10928.1| selenium-binding protein-like [Arabidopsis thaliana]
gi|332010841|gb|AED98224.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 620
Score = 275 bits (702), Expect = 6e-71, Method: Compositional matrix adjust.
Identities = 148/486 (30%), Positives = 252/486 (51%), Gaps = 14/486 (2%)
Query: 2 KQLLQIQAHLITSGLFFNNSFWTINLLKHSADFGSPD---YTVLVFKCINNPGTFCVNAV 58
++L QI A ++ +GL +S+ L S D Y +VF + P TF N +
Sbjct: 28 EELKQIHARMLKTGLM-QDSYAITKFLSFCISSTSSDFLPYAQIVFDGFDRPDTFLWNLM 86
Query: 59 IKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGV 118
I+ +S S P++ ++ Y +M+ + N+YTF SL +C+ E H K G
Sbjct: 87 IRGFSCSDEPERSLLLYQRMLCSSAPHNAYTFPSLLKACSNLSAFEETTQIHAQITKLGY 146
Query: 119 DFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDI 178
+ ++ +NSLIN Y G A +F ++ D +SWNS++ G+V++G M A LF
Sbjct: 147 ENDVYAVNSLINSYAVTGNFKLAHLLFDRIPEPDDVSWNSVIKGYVKAGKMDIALTLFRK 206
Query: 179 MPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEG 238
M E+N +SW MISGY ++ +L+LF EM S ++ ++A+ L+AC + +G
Sbjct: 207 MAEKNAISWTTMISGYVQADMNKEALQLFHEMQNSDVEPDNVSLANALSACAQLGALEQG 266
Query: 239 RSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIH 298
+ +H Y +T ++ + +L LID+Y+KC ++E A VF ++ +++ W A+I G+ H
Sbjct: 267 KWIHSYLNKTRIRMDSVLGCVLIDMYAKCGEMEEALEVFKNIKKKSVQAWTALISGYAYH 326
Query: 299 GKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIK 358
G E I F + I P+ ITF V+ AC L+ EG+ F M Y +K
Sbjct: 327 GHGREAISKFMEM-----QKMGIKPNVITFTAVLTACSYTGLVEEGKLIFYSMERDYNLK 381
Query: 359 PNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVE 418
P HY C+ +L A L +EA+ +++MP + +++W +LL CR + + E
Sbjct: 382 PTIEHYGCIVDLLGRAGLLDEAKRFIQEMP-----LKPNAVIWGALLKACRIHKNIELGE 436
Query: 419 RLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLKEVV 478
+ + + +DP RY N++A+ +W+ A R LMK++ + ++PGC + L+
Sbjct: 437 EIGEILIAIDPYHGGRYVHKANIHAMDKKWDKAAETRRLMKEQGVAKVPGCSTISLEGTT 496
Query: 479 EKLKVG 484
+ G
Sbjct: 497 HEFLAG 502
>gi|62318827|dbj|BAD93880.1| hypothetical protein [Arabidopsis thaliana]
gi|62318835|dbj|BAD93890.1| hypothetical protein [Arabidopsis thaliana]
Length = 635
Score = 274 bits (701), Expect = 6e-71, Method: Compositional matrix adjust.
Identities = 161/535 (30%), Positives = 277/535 (51%), Gaps = 46/535 (8%)
Query: 1 MKQLLQIQAHLITSGLFFNNSFWTINLLKHSADFGSP--DYTVLVFKCINNPGTFCVNAV 58
++ L QI I G+ +S++T L+ H A S Y + C P F N +
Sbjct: 10 LRALTQIHGLFIKYGVD-TDSYFTGKLILHCAISISDALPYARRLLLCFPEPDAFMFNTL 68
Query: 59 IKAYSNSCVPDQGVVFYLQMIKNGFM-PNSYTFVSLFGSCAKTGCVERGGMCHGLALKNG 117
++ YS S P V +++M++ GF+ P+S++F + + + G H ALK+G
Sbjct: 69 VRGYSESDEPHNSVAVFVEMMRKGFVFPDSFSFAFVIKAVENFRSLRTGFQMHCQALKHG 128
Query: 118 VDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFD 177
++ L V +LI MYG G ++ AR +F +M +L++WN++++ R D++ A E+FD
Sbjct: 129 LESHLFVGTTLIGMYGGCGCVEFARKVFDEMHQPNLVAWNAVITACFRGNDVAGAREIFD 188
Query: 178 IMPERNVVSWNIMISGYSKSGNPGCSLKLF------------------------------ 207
M RN SWN+M++GY K+G + ++F
Sbjct: 189 KMLVRNHTSWNVMLAGYIKAGELESAKRIFSEMPHRDDVSWSTMIVGIAHNGSFNESFLY 248
Query: 208 -REMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSK 266
RE+ ++G N+ ++ VL+AC +S F G+ +HG+ + + ++ ALID+YS+
Sbjct: 249 FRELQRAGMSPNEVSLTGVLSACSQSGSFEFGKILHGFVEKAGYSWIVSVNNALIDMYSR 308
Query: 267 CQKVEVAQRVFDSMAD-RNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDE 325
C V +A+ VF+ M + R +V W +MI G +HG+ EE ++LF + T G ++PD
Sbjct: 309 CGNVPMARLVFEGMQEKRCIVSWTSMIAGLAMHGQGEEAVRLFNEM---TAYG--VTPDG 363
Query: 326 ITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILR 385
I+FI ++ AC A L+ EG YF +M Y I+P HY CM +LY + ++A + +
Sbjct: 364 ISFISLLHACSHAGLIEEGEDYFSEMKRVYHIEPEIEHYGCMVDLYGRSGKLQKAYDFIC 423
Query: 386 KMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVA 445
+MP + +I+W +LL C G + + E++ + ++DP + L N YA A
Sbjct: 424 QMP-----IPPTAIVWRTLLGACSSHGNIELAEQVKQRLNELDPNNSGDLVLLSNAYATA 478
Query: 446 GQWEDVARVRELMKKRRMGRMPGCRLVDLKEVVEKLKVGHFWRGGMKEEVNKMME 500
G+W+DVA +R+ M +R+ + LV++ + + K G +G E K+ E
Sbjct: 479 GKWKDVASIRKSMIVQRIKKTTAWSLVEVGKTMYKFTAGEKKKGIDIEAHEKLKE 533
Score = 78.6 bits (192), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 62/217 (28%), Positives = 93/217 (42%), Gaps = 34/217 (15%)
Query: 91 VSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSP 150
+SL SC + + HGL +K GVD + LI + CA ++
Sbjct: 1 LSLLNSCKNLRALTQ---IHGLFIKYGVDTDSYFTGKLI--------LHCAISI------ 43
Query: 151 RDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREM 210
S + A L PE + +N ++ GYS+S P S+ +F EM
Sbjct: 44 ---------------SDALPYARRLLLCFPEPDAFMFNTLVRGYSESDEPHNSVAVFVEM 88
Query: 211 MKSGFRGNDK-TMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQK 269
M+ GF D + A V+ A G +H ++ L+ ++ + T LI +Y C
Sbjct: 89 MRKGFVFPDSFSFAFVIKAVENFRSLRTGFQMHCQALKHGLESHLFVGTTLIGMYGGCGC 148
Query: 270 VEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIK 306
VE A++VFD M NLV WNA+I C G G +
Sbjct: 149 VEFARKVFDEMHQPNLVAWNAVITA-CFRGNDVAGAR 184
>gi|147819809|emb|CAN60740.1| hypothetical protein VITISV_030210 [Vitis vinifera]
Length = 1033
Score = 274 bits (701), Expect = 6e-71, Method: Compositional matrix adjust.
Identities = 168/513 (32%), Positives = 269/513 (52%), Gaps = 51/513 (9%)
Query: 3 QLLQIQAHLITSGLFFNNSFWTINLLKH---SADFGSPDYTVLVFKCINNPGTFCVNAVI 59
+L QI A +I + L N+ F L+ S G DY VF I +P +F A+I
Sbjct: 21 ELRQIHAQMIKTNLL-NHQFTVSRLIAFCSLSGVSGGLDYASSVFSRIQHPNSFIFFALI 79
Query: 60 KAYSNSCVPDQGVVFYLQMIK--NGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNG 117
K +S++ P + ++ Y +M+ N ++ S+ +C K + G HG LK
Sbjct: 80 KGFSDTSNPVESLILYARMLSCLNYSSGVEFSIPSVLKACGKLLAFDEGRQVHGQVLKTH 139
Query: 118 VDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFD 177
+ F+ V NS++ MY FG ++ AR +F +M RD++SWNS+++G++++G++ A ELFD
Sbjct: 140 LWFDPFVGNSMVRMYIDFGEIELARRVFDRMPNRDVVSWNSMIAGYLKAGEIELASELFD 199
Query: 178 IMPERN-------------------------------VVSWNIMISGYSKSGNPGCSLKL 206
MPER+ VV+W MIS Y ++ P +L L
Sbjct: 200 EMPERDLVSCNAMIDGYGKCGRCELAEKVFETMSDKDVVTWTSMISAYVQNRCPMKALDL 259
Query: 207 FREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLK-PNIILDTALIDLYS 265
FREM+ G R + + SVL+A EG+ +H Y ++ + + +ALID+YS
Sbjct: 260 FREMLSLGLRPDGPAIVSVLSAIADLGFVEEGKWLHAYVSMNKIELSSGFIGSALIDMYS 319
Query: 266 KCQKVEVAQRVFDSMAD-RNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPD 324
KC +E A VF S++ RN+ WN+MI G IHG E + +F + I P+
Sbjct: 320 KCGYIENAYHVFRSISHRRNIGDWNSMISGLAIHGLAREALDIFVEMER-----MDIEPN 374
Query: 325 EITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEIL 384
EITF+G++ C L+ EG+ YF M + YKI P HY CM +L+ A E+A ++
Sbjct: 375 EITFLGLLSTCSHGGLVEEGQFYFESMHEKYKIVPRIQHYGCMIDLFGRAGRLEDALGVI 434
Query: 385 RKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAV 444
+ MP + D ++ W ++LS G + + + A +++ P D S Y L N+YA
Sbjct: 435 QNMPFEADLLA-----WKAILSASMKHGHIEIGKSAALRAIELAPDDSSSYVLLSNIYAK 489
Query: 445 AGQWEDVARVRELMKKRRMGRMPGCR--LVDLK 475
AG+W+DVA++R +M++R + ++ GC LVB K
Sbjct: 490 AGRWDDVAKIRLMMRQRGVKKIAGCSSMLVBGK 522
>gi|15221306|ref|NP_177601.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75169836|sp|Q9CA54.1|PP122_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g74630
gi|12324801|gb|AAG52363.1|AC011765_15 hypothetical protein; 86841-88772 [Arabidopsis thaliana]
gi|332197495|gb|AEE35616.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 643
Score = 274 bits (701), Expect = 8e-71, Method: Compositional matrix adjust.
Identities = 162/535 (30%), Positives = 277/535 (51%), Gaps = 46/535 (8%)
Query: 1 MKQLLQIQAHLITSGLFFNNSFWTINLLKHSADFGSP--DYTVLVFKCINNPGTFCVNAV 58
++ L QI I G+ +S++T L+ H A S Y + C P F N +
Sbjct: 18 LRALTQIHGLFIKYGVD-TDSYFTGKLILHCAISISDALPYARRLLLCFPEPDAFMFNTL 76
Query: 59 IKAYSNSCVPDQGVVFYLQMIKNGFM-PNSYTFVSLFGSCAKTGCVERGGMCHGLALKNG 117
++ YS S P V +++M++ GF+ P+S++F + + + G H ALK+G
Sbjct: 77 VRGYSESDEPHNSVAVFVEMMRKGFVFPDSFSFAFVIKAVENFRSLRTGFQMHCQALKHG 136
Query: 118 VDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFD 177
++ L V +LI MYG G ++ AR +F +M +L++WN++++ R D++ A E+FD
Sbjct: 137 LESHLFVGTTLIGMYGGCGCVEFARKVFDEMHQPNLVAWNAVITACFRGNDVAGAREIFD 196
Query: 178 IMPERNVVSWNIMISGYSKSGNPGCSLKLF------------------------------ 207
M RN SWN+M++GY K+G + ++F
Sbjct: 197 KMLVRNHTSWNVMLAGYIKAGELESAKRIFSEMPHRDDVSWSTMIVGIAHNGSFNESFLY 256
Query: 208 -REMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSK 266
RE+ ++G N+ ++ VL+AC +S F G+ +HG+ + + ++ ALID+YS+
Sbjct: 257 FRELQRAGMSPNEVSLTGVLSACSQSGSFEFGKILHGFVEKAGYSWIVSVNNALIDMYSR 316
Query: 267 CQKVEVAQRVFDSMAD-RNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDE 325
C V +A+ VF+ M + R +V W +MI G +HG+ EE ++LF N A G ++PD
Sbjct: 317 CGNVPMARLVFEGMQEKRCIVSWTSMIAGLAMHGQGEEAVRLF----NEMTAYG-VTPDG 371
Query: 326 ITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILR 385
I+FI ++ AC A L+ EG YF +M Y I+P HY CM +LY + ++A + +
Sbjct: 372 ISFISLLHACSHAGLIEEGEDYFSEMKRVYHIEPEIEHYGCMVDLYGRSGKLQKAYDFIC 431
Query: 386 KMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVA 445
+MP + +I+W +LL C G + + E++ + ++DP + L N YA A
Sbjct: 432 QMP-----IPPTAIVWRTLLGACSSHGNIELAEQVKQRLNELDPNNSGDLVLLSNAYATA 486
Query: 446 GQWEDVARVRELMKKRRMGRMPGCRLVDLKEVVEKLKVGHFWRGGMKEEVNKMME 500
G+W+DVA +R+ M +R+ + LV++ + + K G +G E K+ E
Sbjct: 487 GKWKDVASIRKSMIVQRIKKTTAWSLVEVGKTMYKFTAGEKKKGIDIEAHEKLKE 541
Score = 78.6 bits (192), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 62/217 (28%), Positives = 93/217 (42%), Gaps = 34/217 (15%)
Query: 91 VSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSP 150
+SL SC + + HGL +K GVD + LI + CA ++
Sbjct: 9 LSLLNSCKNLRALTQ---IHGLFIKYGVDTDSYFTGKLI--------LHCAISI------ 51
Query: 151 RDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREM 210
S + A L PE + +N ++ GYS+S P S+ +F EM
Sbjct: 52 ---------------SDALPYARRLLLCFPEPDAFMFNTLVRGYSESDEPHNSVAVFVEM 96
Query: 211 MKSGFRGNDK-TMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQK 269
M+ GF D + A V+ A G +H ++ L+ ++ + T LI +Y C
Sbjct: 97 MRKGFVFPDSFSFAFVIKAVENFRSLRTGFQMHCQALKHGLESHLFVGTTLIGMYGGCGC 156
Query: 270 VEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIK 306
VE A++VFD M NLV WNA+I C G G +
Sbjct: 157 VEFARKVFDEMHQPNLVAWNAVITA-CFRGNDVAGAR 192
>gi|359477907|ref|XP_002270439.2| PREDICTED: pentatricopeptide repeat-containing protein
At1g04840-like [Vitis vinifera]
Length = 677
Score = 274 bits (701), Expect = 8e-71, Method: Compositional matrix adjust.
Identities = 161/519 (31%), Positives = 257/519 (49%), Gaps = 46/519 (8%)
Query: 1 MKQLLQIQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIK 60
+ QL QI A + LF N+ T L+ S S DY + +F+C ++P F NA+I+
Sbjct: 53 LPQLHQIHAQIFLHNLFSNSRVVT-QLISSSCSLKSLDYALSIFRCFDHPNLFVFNALIR 111
Query: 61 AYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDF 120
+ + + V ++ M++ P+ T + S A V G HG +K G++F
Sbjct: 112 GLAENSRFEGSVSHFVLMLRLSIRPDRLTLPFVLKSVAALVDVGLGRCLHGGVMKLGLEF 171
Query: 121 ELPVMNSLINMY---------------------------------GC--FGAMDCARNMF 145
+ V SL++MY GC G + A ++F
Sbjct: 172 DSFVRVSLVDMYVKIGELGFGLQLFDESPQRNKAESILLWNVLINGCCKVGDLSKAASLF 231
Query: 146 VQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLK 205
M R+ SWNS+++G VR+GD+ A ELF MPE+NVVSW MI+G+S++G+ +L
Sbjct: 232 EAMPERNAGSWNSLINGFVRNGDLDRARELFVQMPEKNVVSWTTMINGFSQNGDHEKALS 291
Query: 206 LFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYS 265
+F M++ G R ND T+ S L AC + G +H Y + N + TAL+D+Y+
Sbjct: 292 MFWRMLEEGVRPNDLTVVSALLACTKIGALQVGERIHNYLSSNGFQLNRGIGTALVDMYA 351
Query: 266 KCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDE 325
KC ++ A RVF ++L+ W+ MI G IHG ++ ++ F + I+PDE
Sbjct: 352 KCGNIKSASRVFVETKGKDLLTWSVMIWGWAIHGCFDQALQCFVKM-----KSAGINPDE 406
Query: 326 ITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILR 385
+ F+ ++ AC + + +G +F M Y I+P HY + +L A +EA ++
Sbjct: 407 VIFLAILTACSHSGNVDQGLNFFESMRLDYSIEPTMKHYTLIVDLLGRAGRLDEALSFIQ 466
Query: 386 KMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVA 445
MP + D ++W +L CR + M E A+ + ++P+ Y FL NVYA
Sbjct: 467 SMPINPD-----FVIWGALFCACRAHKNIEMAELTAEKLLQLEPKHPGSYVFLSNVYAAV 521
Query: 446 GQWEDVARVRELMKKRRMGRMPGCRLVDLKEVVEKLKVG 484
G+WEDV RVR LMK R + + PG ++++ V G
Sbjct: 522 GRWEDVERVRTLMKNRGVEKDPGWSYIEVEGQVHSFVAG 560
>gi|296082284|emb|CBI21289.3| unnamed protein product [Vitis vinifera]
Length = 581
Score = 274 bits (700), Expect = 8e-71, Method: Compositional matrix adjust.
Identities = 154/463 (33%), Positives = 259/463 (55%), Gaps = 14/463 (3%)
Query: 23 WTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNG 82
W I ++S +P+ T L K ++ F N+VI + S + + + M K
Sbjct: 15 WKIYRRRYS---NNPNLTTLFNKYVDKTNVFSWNSVIAELARSGDSVEALRAFSSMRKLS 71
Query: 83 FMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCAR 142
PN TF SC+ + G H AL G + +L V ++L++MY G + AR
Sbjct: 72 LKPNRSTFPCAIKSCSALLDLHSGRQAHQQALIFGFEPDLFVSSALVDMYSKCGELRDAR 131
Query: 143 NMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGC 202
+F ++S R+++SW S+++G+V++ D A +FD M ER+V+SWN +I+ Y+++G
Sbjct: 132 TLFDEISHRNIVSWTSMITGYVQNDDAHRALRVFDGMAERDVISWNSIIAVYAQNGMSTE 191
Query: 203 SLKLFREMMKSG-FRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALI 261
S+++F M+K G N T+++VL AC S G+ +H ++ L+ N+ + T++I
Sbjct: 192 SMEIFHRMVKDGEINYNAVTLSAVLLACAHSGSQRLGKCIHDQVIKMGLESNVFVGTSII 251
Query: 262 DLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSI 321
D+Y KC KVE+A++ FD M ++N+ W+AM+ G+ +HG +E +++F + +AG +
Sbjct: 252 DMYCKCGKVEMARKAFDRMREKNVKSWSAMVAGYGMHGHAKEALEVFYEM---NMAG--V 306
Query: 322 SPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAE 381
P+ ITF+ V+ AC A LL EG +F+ M + ++P HY CM +L A +EA
Sbjct: 307 KPNYITFVSVLAACSHAGLLEEGWHWFKAMSHEFDVEPGVEHYGCMVDLLGRAGYLKEAF 366
Query: 382 EILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNV 441
++++ M + + ++W +LL CR V + E A+ ++DP++ Y L N+
Sbjct: 367 DLIKGM-----KLRPDFVVWGALLGACRMHKNVDLGEISARKLFELDPKNCGYYVLLSNI 421
Query: 442 YAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLKEVVEKLKVG 484
YA AG+WEDV R+R LMK + + PG LVD+K V VG
Sbjct: 422 YADAGRWEDVERMRILMKNSGLVKPPGFSLVDIKGRVHVFLVG 464
>gi|148909481|gb|ABR17838.1| unknown [Picea sitchensis]
Length = 795
Score = 274 bits (700), Expect = 9e-71, Method: Compositional matrix adjust.
Identities = 142/430 (33%), Positives = 235/430 (54%), Gaps = 43/430 (10%)
Query: 56 NAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALK 115
NA+I YS + + + F+ +M G PNS T VS+ +CA +E+G HG A++
Sbjct: 291 NAIIGGYSLNSQHHEALAFFNRMQVRGIKPNSITMVSVLPACAHLFALEQGQQIHGYAIR 350
Query: 116 NGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHEL 175
+G + V N+L+NMY + G++++A++L
Sbjct: 351 SGFESNDVVGNALVNMYA-------------------------------KCGNVNSAYKL 379
Query: 176 FDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARF 235
F+ MP++NVV+WN +ISGYS+ G+P +L LF EM G + + + SVL AC
Sbjct: 380 FERMPKKNVVAWNAIISGYSQHGHPHEALALFIEMQAQGIKPDSFAIVSVLPACAHFLAL 439
Query: 236 NEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGH 295
+G+ +HGYT+R+ + N+++ T L+D+Y+KC V AQ++F+ M ++++V W MIL +
Sbjct: 440 EQGKQIHGYTIRSGFESNVVVGTGLVDIYAKCGNVNTAQKLFERMPEQDVVSWTTMILAY 499
Query: 296 CIHGKPEEGIKLFTALV-NGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDF 354
IHG E+ + LF+ + GT D I F ++ AC A L+ +G +YF+ M
Sbjct: 500 GIHGHGEDALALFSKMQETGT------KLDHIAFTAILTACSHAGLVDQGLQYFQCMKSD 553
Query: 355 YKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAV 414
Y + P HY C+ +L A +EA I++ M + D + +W +LL CR +
Sbjct: 554 YGLAPKLEHYACLVDLLGRAGHLDEANGIIKNMSLEPD-----ANVWGALLGACRIHCNI 608
Query: 415 AMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDL 474
+ E+ AK ++DP + Y L N+YA A +WEDVA++R++MK++ + + PGC +V +
Sbjct: 609 ELGEQAAKHLFELDPDNAGYYVLLSNIYAEAQRWEDVAKLRKMMKEKGVKKQPGCSVVAV 668
Query: 475 KEVVEKLKVG 484
V+ VG
Sbjct: 669 HRDVQTFLVG 678
Score = 186 bits (471), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 108/386 (27%), Positives = 184/386 (47%), Gaps = 55/386 (14%)
Query: 56 NAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALK 115
NA+I YS + P + + + +M NG PNS T VS+ CA +E+G H A++
Sbjct: 190 NAIIAGYSQNGQPYEALALFSEMQVNGIKPNSSTLVSVMPVCAHLLALEQGKQIHCYAIR 249
Query: 116 NGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHEL 175
+G++ ++ V+N L+NMY + G+++ AH+L
Sbjct: 250 SGIESDVLVVNGLVNMYA-------------------------------KCGNVNTAHKL 278
Query: 176 FDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARF 235
F+ MP R+V SWN +I GYS + +L F M G + N TM SVL AC
Sbjct: 279 FERMPIRDVASWNAIIGGYSLNSQHHEALAFFNRMQVRGIKPNSITMVSVLPACAHLFAL 338
Query: 236 NEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGH 295
+G+ +HGY +R+ + N ++ AL+++Y+KC V A ++F+ M +N+V WNA+I G+
Sbjct: 339 EQGQQIHGYAIRSGFESNDVVGNALVNMYAKCGNVNSAYKLFERMPKKNVVAWNAIISGY 398
Query: 296 CIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFY 355
HG P E + LF + I PD + V+ AC L +G++ I Y
Sbjct: 399 SQHGHPHEALALFIEM-----QAQGIKPDSFAIVSVLPACAHFLALEQGKQ-----IHGY 448
Query: 356 KIKPNFAHYWC----MANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQ 411
I+ F + ++YA A+++ +MPE + + W +++
Sbjct: 449 TIRSGFESNVVVGTGLVDIYAKCGNVNTAQKLFERMPEQ------DVVSWTTMILAYGIH 502
Query: 412 G----AVAMVERLAKSFVDMDPQDFS 433
G A+A+ ++ ++ +D F+
Sbjct: 503 GHGEDALALFSKMQETGTKLDHIAFT 528
Score = 152 bits (384), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 88/327 (26%), Positives = 158/327 (48%), Gaps = 45/327 (13%)
Query: 69 DQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSL 128
++ + Y QM + G P+ F+S+ +C ++ G H + G + ++ V +L
Sbjct: 102 NKALRLYYQMQRTGINPDKLVFLSVIKACGSQSDLQAGRKVHEDIIARGFESDVIVGTAL 161
Query: 129 INMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWN 188
+MY G+++ AR ++FD MP+R+VVSWN
Sbjct: 162 ASMYTKCGSLENAR-------------------------------QVFDRMPKRDVVSWN 190
Query: 189 IMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRT 248
+I+GYS++G P +L LF EM +G + N T+ SV+ C +G+ +H Y +R+
Sbjct: 191 AIIAGYSQNGQPYEALALFSEMQVNGIKPNSSTLVSVMPVCAHLLALEQGKQIHCYAIRS 250
Query: 249 SLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLF 308
++ ++++ L+++Y+KC V A ++F+ M R++ WNA+I G+ ++ + E + F
Sbjct: 251 GIESDVLVVNGLVNMYAKCGNVNTAHKLFERMPIRDVASWNAIIGGYSLNSQHHEALAFF 310
Query: 309 TALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHY---- 364
+ V G I P+ IT + V+ AC L +G Q I Y I+ F
Sbjct: 311 NRM---QVRG--IKPNSITMVSVLPACAHLFALEQG-----QQIHGYAIRSGFESNDVVG 360
Query: 365 WCMANLYAGAELTEEAEEILRKMPEDN 391
+ N+YA A ++ +MP+ N
Sbjct: 361 NALVNMYAKCGNVNSAYKLFERMPKKN 387
Score = 110 bits (275), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 65/211 (30%), Positives = 106/211 (50%), Gaps = 16/211 (7%)
Query: 183 NVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVH 242
N V W I GY K+G +L+L+ +M ++G + SV+ ACG + GR VH
Sbjct: 84 NAVVWKETIIGYVKNGFWNKALRLYYQMQRTGINPDKLVFLSVIKACGSQSDLQAGRKVH 143
Query: 243 GYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPE 302
+ + ++I+ TAL +Y+KC +E A++VFD M R++V WNA+I G+ +G+P
Sbjct: 144 EDIIARGFESDVIVGTALASMYTKCGSLENARQVFDRMPKRDVVSWNAIIAGYSQNGQPY 203
Query: 303 EGIKLFTAL-VNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNF 361
E + LF+ + VNG I P+ T + V+ C L +G++ I Y I+
Sbjct: 204 EALALFSEMQVNG------IKPNSSTLVSVMPVCAHLLALEQGKQ-----IHCYAIRSGI 252
Query: 362 AHYWC----MANLYAGAELTEEAEEILRKMP 388
+ N+YA A ++ +MP
Sbjct: 253 ESDVLVVNGLVNMYAKCGNVNTAHKLFERMP 283
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 73/309 (23%), Positives = 135/309 (43%), Gaps = 40/309 (12%)
Query: 1 MKQLLQIQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIK 60
++Q QI + I SG F +N L+ A G+ + +F+ + NA+I
Sbjct: 338 LEQGQQIHGYAIRSG-FESNDVVGNALVNMYAKCGNVNSAYKLFERMPKKNVVAWNAIIS 396
Query: 61 AYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDF 120
YS P + + +++M G P+S+ VS+ +CA +E+G HG +++G +
Sbjct: 397 GYSQHGHPHEALALFIEMQAQGIKPDSFAIVSVLPACAHFLALEQGKQIHGYTIRSGFES 456
Query: 121 ELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMP 180
+ V L+++Y G ++ A+ +F +M +D++SW +
Sbjct: 457 NVVVGTGLVDIYAKCGNVNTAQKLFERMPEQDVVSWTT---------------------- 494
Query: 181 ERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEG-R 239
MI Y G+ +L LF +M ++G + + ++LTAC + ++G +
Sbjct: 495 ---------MILAYGIHGHGEDALALFSKMQETGTKLDHIAFTAILTACSHAGLVDQGLQ 545
Query: 240 SVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMA---DRNLVCWNAMILGHC 296
L P + L+DL + ++ A + +M+ D N+ W A+ LG C
Sbjct: 546 YFQCMKSDYGLAPKLEHYACLVDLLGRAGHLDEANGIIKNMSLEPDANV--WGAL-LGAC 602
Query: 297 -IHGKPEEG 304
IH E G
Sbjct: 603 RIHCNIELG 611
>gi|356569774|ref|XP_003553071.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Glycine max]
Length = 775
Score = 274 bits (700), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 153/431 (35%), Positives = 241/431 (55%), Gaps = 13/431 (3%)
Query: 56 NAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALK 115
+A++ Y + + ++ +V +++M +G + VS +C++ VE G HGLA+K
Sbjct: 239 SAMVSCYEQNEMGEEALVLFVEMKGSGVAVDEVVVVSALSACSRVLNVEMGRWVHGLAVK 298
Query: 116 NGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPR-DLISWNSIVSGHVRSGDMSAAHE 174
GV+ + + N+LI++Y G + AR +F DLISWNS++SG++R G + A
Sbjct: 299 VGVEDYVSLKNALIHLYSSCGEIVDARRIFDDGGELLDLISWNSMISGYLRCGSIQDAEM 358
Query: 175 LFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSAR 234
LF MPE++VVSW+ MISGY++ +L LF+EM G R ++ + S ++AC A
Sbjct: 359 LFYSMPEKDVVSWSAMISGYAQHECFSEALALFQEMQLHGVRPDETALVSAISACTHLAT 418
Query: 235 FNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILG 294
+ G+ +H Y R L+ N+IL T LID+Y KC VE A VF +M ++ + WNA+ILG
Sbjct: 419 LDLGKWIHAYISRNKLQVNVILSTTLIDMYMKCGCVENALEVFYAMEEKGVSTWNAVILG 478
Query: 295 HCIHGKPEEGIKLFTAL-VNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMID 353
++G E+ + +F + GTV P+EITF+GV+ AC L+ +GR YF MI
Sbjct: 479 LAMNGSVEQSLNMFADMKKTGTV------PNEITFMGVLGACRHMGLVNDGRHYFNSMIH 532
Query: 354 FYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGA 413
+KI+ N HY CM +L A L +EAEE++ MP M+ + W +LL CR
Sbjct: 533 EHKIEANIKHYGCMVDLLGRAGLLKEAEELIDSMP-----MAPDVATWGALLGACRKHRD 587
Query: 414 VAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVD 473
M ERL + + + P + L N+YA G W +V +R +M + + + PGC +++
Sbjct: 588 NEMGERLGRKLIQLQPDHDGFHVLLSNIYASKGNWGNVLEIRGIMAQHGVVKTPGCSMIE 647
Query: 474 LKEVVEKLKVG 484
V + G
Sbjct: 648 ANGTVHEFLAG 658
Score = 167 bits (423), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 122/453 (26%), Positives = 204/453 (45%), Gaps = 68/453 (15%)
Query: 2 KQLLQIQAHLITSGLFFN--NSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVI 59
+ Q+ + I +GL + + IN HS Y++ +F + NP TF N ++
Sbjct: 17 RHFKQLLSQTILTGLITDPYAASRLINFSSHSTTLVPFHYSLRIFNHLRNPNTFTWNTIM 76
Query: 60 KAY---SNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKN 116
+A+ NS P Q ++ Y + + P+SYT+ L CA G H A+ +
Sbjct: 77 RAHLYLQNS--PHQALLHYKLFLASHAKPDSYTYPILLQCCAARVSEFEGRQLHAHAVSS 134
Query: 117 GVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELF 176
G D ++ V N+L+N+Y G++ AR +F + DL+SWN++++G+V++G++ A +F
Sbjct: 135 GFDGDVYVRNTLMNLYAVCGSVGSARRVFEESPVLDLVSWNTLLAGYVQAGEVEEAERVF 194
Query: 177 DIMPERN---------------------------------VVSWNIMISGYSKSGNPGCS 203
+ MPERN +VSW+ M+S Y ++ +
Sbjct: 195 EGMPERNTIASNSMIALFGRKGCVEKARRIFNGVRGRERDMVSWSAMVSCYEQNEMGEEA 254
Query: 204 LKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDL 263
L LF EM SG ++ + S L+AC R GR VHG V+ ++ + L ALI L
Sbjct: 255 LVLFVEMKGSGVAVDEVVVVSALSACSRVLNVEMGRWVHGLAVKVGVEDYVSLKNALIHL 314
Query: 264 YSKCQKVEVAQRVFDSMAD-RNLVCWNAMILGH-----------CIHGKPEEGIKLFTAL 311
YS C ++ A+R+FD + +L+ WN+MI G+ + PE+ + ++A+
Sbjct: 315 YSSCGEIVDARRIFDDGGELLDLISWNSMISGYLRCGSIQDAEMLFYSMPEKDVVSWSAM 374
Query: 312 VNGTVAGGSIS---------------PDEITFIGVICACVRAELLTEGRKYFRQMIDFYK 356
++G S PDE + I AC L G K+ I K
Sbjct: 375 ISGYAQHECFSEALALFQEMQLHGVRPDETALVSAISACTHLATLDLG-KWIHAYISRNK 433
Query: 357 IKPNFAHYWCMANLYAGAELTEEAEEILRKMPE 389
++ N + ++Y E A E+ M E
Sbjct: 434 LQVNVILSTTLIDMYMKCGCVENALEVFYAMEE 466
Score = 44.3 bits (103), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 50/235 (21%), Positives = 98/235 (41%), Gaps = 21/235 (8%)
Query: 20 NSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMI 79
N + L+ G + + VF + G NAVI + + +Q + + M
Sbjct: 437 NVILSTTLIDMYMKCGCVENALEVFYAMEEKGVSTWNAVILGLAMNGSVEQSLNMFADMK 496
Query: 80 KNGFMPNSYTFVSLFGSCAKTGCVERG-----GMCHGLALKNGVDFELPVMNSLINMYGC 134
K G +PN TF+ + G+C G V G M H ++ ++ + ++++ G
Sbjct: 497 KTGTVPNEITFMGVLGACRHMGLVNDGRHYFNSMIH----EHKIEANIKHYGCMVDLLGR 552
Query: 135 FGAMDCARNMF--VQMSPRDLISWNSIVSG--HVRSGDMSA--AHELFDIMPERNVVSWN 188
G + A + + M+P D+ +W +++ R +M +L + P+ + ++
Sbjct: 553 AGLLKEAEELIDSMPMAP-DVATWGALLGACRKHRDNEMGERLGRKLIQLQPDHD--GFH 609
Query: 189 IMISG-YSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVH 242
+++S Y+ GN G L++ M + G S++ A G F G H
Sbjct: 610 VLLSNIYASKGNWGNVLEIRGIMAQHGVVKTPG--CSMIEANGTVHEFLAGDKTH 662
>gi|225450761|ref|XP_002279376.1| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
[Vitis vinifera]
Length = 584
Score = 274 bits (700), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 163/541 (30%), Positives = 273/541 (50%), Gaps = 52/541 (9%)
Query: 2 KQLLQIQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKA 61
+ L +I A LI +G + T + ++ + DY VF IN P ++ +I+
Sbjct: 41 EDLKKIHAQLIITGQIKDTFIATKTVESYAVSARNIDYAFWVFVGINYPDSYSWTTMIRG 100
Query: 62 YSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFE 121
+ + P++ + FY M + G N +TF+ + + + G + HG +K G ++
Sbjct: 101 FVEAKNPEKALEFYGLMRQRGVELNKFTFLFVLKAYGLRPSYQEGRIVHGKLVKVGFCYD 160
Query: 122 LPVMNSLINMY-----------------------------GCFGAMDC--ARNMFVQMSP 150
+ N+LI+MY GCFG D AR +F +M
Sbjct: 161 VFTRNALIHMYLKCGSITDAHLLFDEMPNHNVVTWNTMITGCFGCGDTERARRLFGEMPE 220
Query: 151 RDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREM 210
R++ SWN++V G+ + G + A LFD+MPER+VVSW MIS Y ++G +L+LF+EM
Sbjct: 221 RNVGSWNAVVGGYSKLGHVDIARSLFDLMPERDVVSWGSMISAYVQNGRAAEALELFKEM 280
Query: 211 MKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKV 270
M +G + + S+L+AC + + GR +H Y R+ L+ ++ LDTAL+D+Y+KC +
Sbjct: 281 MLAGVSADSIIITSILSACAQIGALDMGRWIHAYMKRSKLRNDVFLDTALVDMYAKCGCI 340
Query: 271 EVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIG 330
+ A VF++M +NL WNAM+ G IHG ++LF + + P++ITF+
Sbjct: 341 DTAFGVFNTMPRKNLCSWNAMLSGLAIHGHGFAALELFKQM-----ESTGVGPNDITFVA 395
Query: 331 VICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPED 390
V+ AC + EG K F QM + I P HY CM ++ L EA+E++R MP +
Sbjct: 396 VLSACSHIGSVEEGWKKFNQMDKEFNITPKVEHYGCMVDILCRQGLINEAKEMIRTMPLE 455
Query: 391 NDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWED 450
+ ++W +LL+ C+ G + E + + +D Y L N++A QW +
Sbjct: 456 PN-----VVIWGALLNACKVHGYTNVGEDVVGYIQKLVSEDGGCYVLLSNIFAAKSQWNE 510
Query: 451 VARVRELMKKRRMG---RMPGCRLVDLKEVVEKL----KVGHFWR--GGMKEEVNKMMEC 501
V + R++MK+ MG ++PG ++L VV ++ WR + E +N +E
Sbjct: 511 VEKTRKMMKQ--MGVEKKIPGYSSIELDSVVHDFFAEDRLHSKWREVSTVIERLNTHLEV 568
Query: 502 R 502
+
Sbjct: 569 K 569
>gi|115434844|ref|NP_001042180.1| Os01g0176300 [Oryza sativa Japonica Group]
gi|11034538|dbj|BAB17062.1| hypothetical protein [Oryza sativa Japonica Group]
gi|113531711|dbj|BAF04094.1| Os01g0176300 [Oryza sativa Japonica Group]
gi|125569234|gb|EAZ10749.1| hypothetical protein OsJ_00586 [Oryza sativa Japonica Group]
Length = 665
Score = 274 bits (700), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 143/426 (33%), Positives = 237/426 (55%), Gaps = 10/426 (2%)
Query: 56 NAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALK 115
NA+I ++ S + ++ M++ M + T+VS+ +C K + G H L+
Sbjct: 130 NALISGHNRSGRFELSCCSFVDMVRASAMATAVTYVSVLSACGKGKDLLLGMQVHKRVLE 189
Query: 116 NGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHEL 175
+GV + V N+L++MY G MD A +F M R + SW S++SG VRSG + A +L
Sbjct: 190 SGVLPDQRVENALVDMYAECGDMDAAWVLFEGMQMRSMASWTSVISGLVRSGQVDRARDL 249
Query: 176 FDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARF 235
FD MPER+ ++W MI GY + G +L+ FR M R ++ TM SV+TAC +
Sbjct: 250 FDHMPERDTIAWTAMIDGYVQVGRFRDALETFRYMQICKVRADEFTMVSVVTACAQLGAL 309
Query: 236 NEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGH 295
G Y R +K ++ + ALID+YSKC +E A VF M +R+ W A+ILG
Sbjct: 310 ETGEWARIYMGRLGIKMDVFVGNALIDMYSKCGSIERALDVFKDMHNRDKFTWTAIILGL 369
Query: 296 CIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFY 355
++G+ EE I +F ++ +PDE+TF+GV+ AC A L+ +GR++F M + Y
Sbjct: 370 AVNGRGEEAIDMFYRMLRALQ-----TPDEVTFVGVLTACTHAGLVDKGREFFLSMTEAY 424
Query: 356 KIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVA 415
I P HY C+ ++ A +EA + + KMP M S +W +LL+ CR G
Sbjct: 425 NISPTVVHYGCLIDVLGRAGKLKEALDTIDKMP-----MKPNSTIWGTLLASCRVYGNSE 479
Query: 416 MVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLK 475
+ E A+ +++DP + + Y L N+YA + +W+DV R+R+++ ++ + + PGC ++++
Sbjct: 480 IGELAAERLLELDPDNSTAYILLSNMYAKSNRWKDVRRIRQIIMEKGIKKEPGCSMIEMN 539
Query: 476 EVVEKL 481
++ +
Sbjct: 540 GIIHEF 545
Score = 79.7 bits (195), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 93/402 (23%), Positives = 167/402 (41%), Gaps = 75/402 (18%)
Query: 69 DQGVVFYLQMIKNGFMPNSYTFVSLF-----GSCAKTGCVERGGMCHGLALKNGVDFELP 123
++ V Y++M+ G P++YTF SL A GG H +K G++
Sbjct: 33 EEAVAGYVRMLAGGARPDAYTFPSLLKAAAAARGAAVAAASVGGAIHAHVVKFGMESNAH 92
Query: 124 VMNSLINMYGCFGAMDCARNMFVQM-------SPRDLISWNSIVSGHVRSGDMSAAHELF 176
+SLI MY G AR + +P + WN+++SGH RSG F
Sbjct: 93 AASSLIVMYAARGDGAAARAVLEAACLATGGGAP---VMWNALISGHNRSGR-------F 142
Query: 177 DIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFN 236
++ CS F +M+++ T SVL+ACG+
Sbjct: 143 EL---------------------SCCS---FVDMVRASAMATAVTYVSVLSACGKGKDLL 178
Query: 237 EGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHC 296
G VH + + + P+ ++ AL+D+Y++C ++ A +F+ M R++ W ++I G
Sbjct: 179 LGMQVHKRVLESGVLPDQRVENALVDMYAECGDMDAAWVLFEGMQMRSMASWTSVISGLV 238
Query: 297 IHGK-----------PEEGIKLFTALVNGTVAGG---------------SISPDEITFIG 330
G+ PE +TA+++G V G + DE T +
Sbjct: 239 RSGQVDRARDLFDHMPERDTIAWTAMIDGYVQVGRFRDALETFRYMQICKVRADEFTMVS 298
Query: 331 VICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPED 390
V+ AC + L G ++ R + IK + + ++Y+ E A ++ + M +
Sbjct: 299 VVTACAQLGALETG-EWARIYMGRLGIKMDVFVGNALIDMYSKCGSIERALDVFKDM-HN 356
Query: 391 NDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDF 432
D ++ +I+ + L R + A+ M R+ ++ D F
Sbjct: 357 RDKFTWTAII-LGLAVNGRGEEAIDMFYRMLRALQTPDEVTF 397
>gi|449447707|ref|XP_004141609.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g33350-like [Cucumis sativus]
gi|449510706|ref|XP_004163739.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g33350-like [Cucumis sativus]
Length = 563
Score = 273 bits (699), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 157/516 (30%), Positives = 268/516 (51%), Gaps = 30/516 (5%)
Query: 1 MKQLLQIQAHLITSGLFFNNSFWTINLLKH-SADFGSPDYTVLVFKCINNPGTFCVNAVI 59
+ L Q+Q LI+ G F+ L++ + Y +F + +P F A+I
Sbjct: 56 LNHLKQLQGFLISHG-HSQTQFFAFKLVRFCNLTLADLCYARYIFDNLTSPNVFLYTAMI 114
Query: 60 KAYSNSCVPDQGVVFYLQMIKNGFM-PNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGV 118
AY++ P + Y M++ G + PN++ + + SC M H LK+G
Sbjct: 115 TAYASYPDPKAAFLLYRNMVRRGAIRPNNFIYPHVLRSCPDVLGSNATKMVHTQVLKSGF 174
Query: 119 DFELPVMNSLINMYGCFGA-MDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFD 177
V ++++ Y F + + AR MF +M R ++SW +++SG+ R G+ +A ELF+
Sbjct: 175 GGYPVVQTAIVDSYSRFSSDIGSARQMFDEMLERTVVSWTAMISGYARLGNFDSAIELFE 234
Query: 178 IMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDK---------TMASVLTA 228
MPER+V +WN +I+G +++G ++ LF+ M+ GN+ T+ S L+A
Sbjct: 235 SMPERDVPAWNALIAGCAQNGFFCEAIWLFKRMVLLALEGNNNDRENKPNKTTLGSALSA 294
Query: 229 CGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCW 288
CG + + G+ +HGY +T + + AL+D+Y KC ++VA+RVFD + +NL W
Sbjct: 295 CGHTGMLHLGKWIHGYVFKTYPGQDSFISNALLDMYGKCGNLKVARRVFDMITLKNLTSW 354
Query: 289 NAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYF 348
N++I +HG I LF L++ G + P+E+TF+GV+ AC L+ +G YF
Sbjct: 355 NSLINCLALHGHSGSAIDLFAELIH---CGDGVKPNEVTFVGVLNACTHGGLVEKGYSYF 411
Query: 349 RQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLC 408
M Y I+P H+ C+ +L A EEA E++R M N+ + ++W SLL+ C
Sbjct: 412 EMMRRDYDIEPQIEHFGCLIDLLGRAGRFEEAMEVVRGM-----NIEPDEVVWGSLLNAC 466
Query: 409 RFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPG 468
+ G + E K ++MDP++ L N+YA G+W++V +VR L+K++ + PG
Sbjct: 467 KIHGRSDLAEYSVKKLIEMDPKNGGYRIMLANIYAEFGKWDEVRKVRRLLKEKNAYKTPG 526
Query: 469 CRLVDLKEVVEKLKVGHFWRGGMK----EEVNKMME 500
C +++ +V F+ M EE+ K +E
Sbjct: 527 CSWIEVDN-----QVYQFYSFDMSHPSVEEIYKTLE 557
>gi|357468161|ref|XP_003604365.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355505420|gb|AES86562.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 874
Score = 273 bits (699), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 161/505 (31%), Positives = 259/505 (51%), Gaps = 13/505 (2%)
Query: 10 HLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSNSCVPD 69
H + G +N F + + G +Y +F + N V+ Y+ +
Sbjct: 160 HAVIHGFLDSNLFVQKGFIHLFSLCGLVNYARKIFDMGDGWEVVTWNVVLSGYNRFKRYE 219
Query: 70 QGVVFYLQMIKNG--FMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNG-VDFELPVMN 126
+ +++M K PNS T V + +C+K + G + +K G V+ L + N
Sbjct: 220 ESKRLFIEMEKKCECVSPNSVTLVLMLSACSKLKDLVGGKCIYNKYIKEGIVEPNLILEN 279
Query: 127 SLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVS 186
+LI+M+ G MD AR +F +M RD+ISW SIV+G + + A + FD MPER+ VS
Sbjct: 280 ALIDMFASCGEMDAARGVFDEMKTRDVISWTSIVTGFANTCRIDLARKYFDQMPERDYVS 339
Query: 187 WNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTV 246
W MI GY + L LFR+M S + ++ TM S+LTAC G Y
Sbjct: 340 WTAMIDGYLRMNRFKEVLTLFRDMQMSNVKPDEFTMVSILTACAHLGALELGEWAKTYID 399
Query: 247 RTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIK 306
+ +K + + ALID+Y KC VE A+++F+ M ++ W AMI+G +G EE +
Sbjct: 400 KNKIKNDTFIGNALIDMYFKCGNVEKAKKIFNEMQKKDKFTWTAMIVGLANNGHGEEALT 459
Query: 307 LFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWC 366
+F+ ++ S++PDEIT+IGV+CAC L+ +G+ +F M + IKPN HY C
Sbjct: 460 MFSYMLE-----ASVTPDEITYIGVMCACTHVGLVAKGKHFFSNMAVQHGIKPNLTHYGC 514
Query: 367 MANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVD 426
M +L A +EA E++ MP + SI+W SLL CR V + E A ++
Sbjct: 515 MVDLLGRAGHLKEALEVIMNMPVKPN-----SIVWGSLLGACRVHKNVQLAEMAANEILE 569
Query: 427 MDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLKEVVEKLKVGHF 486
++P++ + Y L N+YA +W+++ VR++M +R + ++PGC L+++ +V + G
Sbjct: 570 LEPENGAVYVLLCNIYAACKKWKNLHNVRKMMMERGIKKIPGCSLMEMNGIVYEFVAGDK 629
Query: 487 WRGGMKEEVNKMMECRQSRSLATVS 511
KE K+ +Q S A S
Sbjct: 630 SHPQSKEIYAKLENMKQDLSNAGYS 654
Score = 114 bits (284), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 98/422 (23%), Positives = 184/422 (43%), Gaps = 63/422 (14%)
Query: 1 MKQLLQIQAHLITSGLFFNNSFWT-INLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVI 59
M ++ QI + I +GL N+ F T + + + + G Y VF I P F N +I
Sbjct: 48 MYEINQIHSQTIKTGLSSNHLFLTKVIIFCCTKESGDVYYARKVFDEIPQPSVFIWNTMI 107
Query: 60 KAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNG-V 118
K YS + GV Y M+ + P+ +TF L K ++ G + A+ +G +
Sbjct: 108 KGYSRINCSESGVSLYKLMLVHNIKPDGFTFPFLLKGFTKDMALKYGKVLLNHAVIHGFL 167
Query: 119 DFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDI 178
D L V I+++ G ++ AR +F ++++WN
Sbjct: 168 DSNLFVQKGFIHLFSLCGLVNYARKIFDMGDGWEVVTWN--------------------- 206
Query: 179 MPERNVVSWNIMISGYSKSGNPGCSLKLFREMMK--SGFRGNDKTMASVLTACGRSARFN 236
+++SGY++ S +LF EM K N T+ +L+AC +
Sbjct: 207 ----------VVLSGYNRFKRYEESKRLFIEMEKKCECVSPNSVTLVLMLSACSKLKDLV 256
Query: 237 EGRSVHGYTVRTSL-KPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGH 295
G+ ++ ++ + +PN+IL+ ALID+++ C +++ A+ VFD M R+++ W +++ G
Sbjct: 257 GGKCIYNKYIKEGIVEPNLILENALIDMFASCGEMDAARGVFDEMKTRDVISWTSIVTGF 316
Query: 296 C-----------IHGKPEEGIKLFTALVNGTV---------------AGGSISPDEITFI 329
PE +TA+++G + ++ PDE T +
Sbjct: 317 ANTCRIDLARKYFDQMPERDYVSWTAMIDGYLRMNRFKEVLTLFRDMQMSNVKPDEFTMV 376
Query: 330 GVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPE 389
++ AC L G ++ + ID KIK + + ++Y E+A++I +M +
Sbjct: 377 SILTACAHLGALELG-EWAKTYIDKNKIKNDTFIGNALIDMYFKCGNVEKAKKIFNEMQK 435
Query: 390 DN 391
+
Sbjct: 436 KD 437
Score = 85.9 bits (211), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 65/289 (22%), Positives = 133/289 (46%), Gaps = 15/289 (5%)
Query: 165 RSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMAS 224
SGD+ A ++FD +P+ +V WN MI GYS+ + L++ M+ + + T
Sbjct: 81 ESGDVYYARKVFDEIPQPSVFIWNTMIKGYSRINCSESGVSLYKLMLVHNIKPDGFTFPF 140
Query: 225 VLTACGRSARFNEGRSVHGYTV-RTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADR 283
+L + G+ + + V L N+ + I L+S C V A+++FD
Sbjct: 141 LLKGFTKDMALKYGKVLLNHAVIHGFLDSNLFVQKGFIHLFSLCGLVNYARKIFDMGDGW 200
Query: 284 NLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTE 343
+V WN ++ G+ + EE +LF + +SP+ +T + ++ AC + + L
Sbjct: 201 EVVTWNVVLSGYNRFKRYEESKRLFIEMEKKC---ECVSPNSVTLVLMLSACSKLKDLVG 257
Query: 344 GRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVS 403
G+ + + I ++PN + +++A + A + +M + D +S+ SI+
Sbjct: 258 GKCIYNKYIKEGIVEPNLILENALIDMFASCGEMDAARGVFDEM-KTRDVISWTSIV-TG 315
Query: 404 LLSLCRFQGAVAMVERLAKSFVDMDPQ-DFSRYQFLLNVYAVAGQWEDV 451
+ CR LA+ + D P+ D+ + +++ Y ++++V
Sbjct: 316 FANTCRID--------LARKYFDQMPERDYVSWTAMIDGYLRMNRFKEV 356
>gi|225432698|ref|XP_002278762.1| PREDICTED: pentatricopeptide repeat-containing protein At4g14820
[Vitis vinifera]
gi|297737070|emb|CBI26271.3| unnamed protein product [Vitis vinifera]
Length = 727
Score = 273 bits (699), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 148/502 (29%), Positives = 268/502 (53%), Gaps = 12/502 (2%)
Query: 1 MKQLLQ-IQAHLITSGLFFN-NSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAV 58
+K L++ ++ H + + L F+ + F L++ A G L+F + + + +
Sbjct: 135 VKSLVEGLEIHGLAAKLGFDSDPFVQTGLVRMYAACGRIAEARLMFDKMFHRDVVTWSIM 194
Query: 59 IKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGV 118
I Y S + + ++ + +M P+ ++ +C + G + G M H ++N +
Sbjct: 195 IDGYCQSGLFNDALLLFEEMKNYNVEPDEMMLSTVLSACGRAGNLSYGKMIHDFIMENNI 254
Query: 119 DFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDI 178
+ + ++L+ MY G+MD A N+F +M+P++L++ ++V+G+ + G + A +F+
Sbjct: 255 VVDPHLQSALVTMYASCGSMDLALNLFEKMTPKNLVASTAMVTGYSKLGQIENARSVFNQ 314
Query: 179 MPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEG 238
M ++++V W+ MISGY++S +P +L LF EM G + + TM SV+TAC ++
Sbjct: 315 MVKKDLVCWSAMISGYAESDSPQEALNLFNEMQSLGIKPDQVTMLSVITACAHLGALDQA 374
Query: 239 RSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIH 298
+ +H + + + ++ ALI++Y+KC +E A+R+FD M +N++ W MI +H
Sbjct: 375 KWIHLFVDKNGFGGALPINNALIEMYAKCGSLERARRIFDKMPRKNVISWTCMISAFAMH 434
Query: 299 GKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIK 358
G ++ F + + +I P+ ITF+GV+ AC A L+ EGRK F MI+ + I
Sbjct: 435 GDAGSALRFFHQMED-----ENIEPNGITFVGVLYACSHAGLVEEGRKIFYSMINEHNIT 489
Query: 359 PNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVE 418
P HY CM +L+ A L EA E++ MP ++ I+W SL++ CR G + + E
Sbjct: 490 PKHVHYGCMVDLFGRANLLREALELVEAMP-----LAPNVIIWGSLMAACRVHGEIELGE 544
Query: 419 RLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLKEVV 478
AK +++DP + FL N+YA A +WEDV +VR+LMK + + + GC +L +
Sbjct: 545 FAAKRLLELDPDHDGAHVFLSNIYAKARRWEDVGQVRKLMKHKGISKERGCSRFELNNEI 604
Query: 479 EKLKVGHFWRGGMKEEVNKMME 500
+ V E K+ E
Sbjct: 605 HEFLVADRSHKHADEIYEKLYE 626
Score = 146 bits (369), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 109/443 (24%), Positives = 183/443 (41%), Gaps = 74/443 (16%)
Query: 1 MKQLLQIQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIK 60
+ L Q+ A ++ S L + S ++ A S DY + VF I P T N ++
Sbjct: 36 LTHLKQVHAQILRSKLDRSTSLLVKLVISSCALSSSLDYALSVFNLIPKPETHLCNRFLR 95
Query: 61 AYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDF 120
S S P++ ++ Y +M G + ++F L + ++ + G HGLA K G D
Sbjct: 96 ELSRSEEPEKTLLVYERMRTQGLAVDRFSFPPLLKALSRVKSLVEGLEIHGLAAKLGFDS 155
Query: 121 ELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMP 180
+ V L+ MY G + AR MF +M RD+++W+ ++ G+ +SG + A
Sbjct: 156 DPFVQTGLVRMYAACGRIAEARLMFDKMFHRDVVTWSIMIDGYCQSGLFNDA-------- 207
Query: 181 ERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRS 240
L LF EM ++ +++VL+ACGR+ + G+
Sbjct: 208 -----------------------LLLFEEMKNYNVEPDEMMLSTVLSACGRAGNLSYGKM 244
Query: 241 VHGYTVRTSL-------------------------------KPNIILDTALIDLYSKCQK 269
+H + + ++ N++ TA++ YSK +
Sbjct: 245 IHDFIMENNIVVDPHLQSALVTMYASCGSMDLALNLFEKMTPKNLVASTAMVTGYSKLGQ 304
Query: 270 VEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFI 329
+E A+ VF+ M ++LVCW+AMI G+ P+E + LF + I PD++T +
Sbjct: 305 IENARSVFNQMVKKDLVCWSAMISGYAESDSPQEALNLFNEM-----QSLGIKPDQVTML 359
Query: 330 GVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPE 389
VI AC L + K+ +D + +YA E A I KMP
Sbjct: 360 SVITACAHLGALDQA-KWIHLFVDKNGFGGALPINNALIEMYAKCGSLERARRIFDKMPR 418
Query: 390 DNDNMSFESIMWVSLLSLCRFQG 412
N I W ++S G
Sbjct: 419 KN------VISWTCMISAFAMHG 435
>gi|357518907|ref|XP_003629742.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355523764|gb|AET04218.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 616
Score = 273 bits (699), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 158/500 (31%), Positives = 273/500 (54%), Gaps = 26/500 (5%)
Query: 6 QIQAHLITSGLFFNNSFWTINLLKHSADFGS---PDYTVLVFKCINNPGTFCVNAVIKAY 62
Q+ AH+ + L +S+ NLL+ Y L+F +++P F +A+I+AY
Sbjct: 29 QLHAHIYRNNLH-QSSYVITNLLRFITTLPHIPVHTYPHLLFSQVHSPNPFLYSALIRAY 87
Query: 63 SNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFEL 122
+ + + Y M+ N P S+TF +LF S K + G H A G +L
Sbjct: 88 ARNGPFHHSIRLYTSMLNNNVSPVSFTFSALF-SLLKNPSL--GSQLHLHAFLFGFVNDL 144
Query: 123 PVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPER 182
V N++I+MY FG +DCAR +F +M RD+++W ++ + RSGDM +A ELF +P +
Sbjct: 145 YVGNTIIHMYVKFGVLDCARKVFDEMPHRDVVTWTELIVAYARSGDMDSACELFVGLPVK 204
Query: 183 NVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTAC---GRSARFNEGR 239
++V+W M++GYS++ P +L+ FR+M ++G ++ T+ ++AC G S + R
Sbjct: 205 DMVAWTSMVTGYSQNAMPKKALQFFRKMREAGVVTDEITLVGAISACAQLGVSGYADWIR 264
Query: 240 SVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHG 299
+ + R N+ + +ALID+YSKC VE A VF M + N+ +++MI+G +HG
Sbjct: 265 EI-AESSRFGSGSNVFVGSALIDMYSKCGNVEEAYNVFKGMKEMNVFSYSSMIVGFAVHG 323
Query: 300 KPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKP 359
+ IKLF ++ I P+ +TF+G+ AC A ++ +G++ F M + Y + P
Sbjct: 324 RARSAIKLFYEMLE-----NGIKPNHVTFVGLFTACSHAGMVEQGQQLFGAMKECYGVSP 378
Query: 360 NFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVER 419
HY CMA+L A E+A ++++ MP M +W +LL G + E
Sbjct: 379 TADHYACMADLLGRAGHLEKALQLVQTMP-----MEPNGGVWGALLGASHIHGNPDVAEI 433
Query: 420 LAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLKEVVE 479
++S +++P + Y L YA+A +W+DV+RVR+LM+++++ + PGC V+ K +
Sbjct: 434 ASRSLFELEPDNLGNYLLLSKTYALAAKWDDVSRVRKLMREKQLRKNPGCSWVEAKNGI- 492
Query: 480 KLKVGHFWRGGMKE-EVNKM 498
+ F+ G +K E+N++
Sbjct: 493 ---IHEFFAGDVKHPEINEI 509
>gi|296084925|emb|CBI28334.3| unnamed protein product [Vitis vinifera]
Length = 604
Score = 273 bits (699), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 161/474 (33%), Positives = 258/474 (54%), Gaps = 30/474 (6%)
Query: 3 QLLQIQAHLITSGLFFNNSFWTINLLKH---SADFGSPDYTVLVFKCINNPGTFCVNAVI 59
+L QI A +I + L N+ F L+ S G DY VF I +P +F A+I
Sbjct: 21 ELRQIHAQMIKTNLL-NHQFTVSRLIAFCSLSGVSGGLDYASSVFSRIQHPNSFIFFALI 79
Query: 60 KAYSNSCVPDQGVVFYLQMIK--NGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNG 117
K +S++ P + ++ Y +M+ N ++ S+ +C K + G HG LK
Sbjct: 80 KGFSDTSNPVESLILYARMLSCLNYSSGVEFSIPSVLKACGKLLAFDEGRQVHGQVLKTH 139
Query: 118 VDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFD 177
+ F+ V NS++ MY FG ++ AR +F +M RD++SWNS+++G++++G++ A ELFD
Sbjct: 140 LWFDPFVGNSMVRMYIDFGEIELARRVFDRMPNRDVVSWNSMIAGYLKAGEIELASELFD 199
Query: 178 IMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNE 237
MPER++VS N MI GY K EM+ G R + + SVL+A E
Sbjct: 200 EMPERDLVSCNAMIDGYGK------------EMLSLGLRPDGPAIVSVLSAIADLGFVEE 247
Query: 238 GRSVHGYTVRTSLK-PNIILDTALIDLYSKCQKVEVAQRVFDSMAD-RNLVCWNAMILGH 295
G+ +H Y ++ + + +ALID+YSKC +E A VF S++ RN+ WN+MI G
Sbjct: 248 GKWLHAYVSMNKIELSSGFIGSALIDMYSKCGYIENAYHVFRSISHRRNIGDWNSMISGL 307
Query: 296 CIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFY 355
IHG E + +F + I P+EITF+G++ C L+ EG+ YF M + Y
Sbjct: 308 AIHGLAREALDIFVEMER-----MDIEPNEITFLGLLSTCSHGGLVEEGQFYFESMHEKY 362
Query: 356 KIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVA 415
KI P HY CM +L+ A E+A +++ MP + D ++ W ++LS G +
Sbjct: 363 KIVPRIQHYGCMIDLFGRAGRLEDALGVIQNMPFEADLLA-----WKAILSASMKHGHIE 417
Query: 416 MVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGC 469
+ + A +++ P D S Y L N+YA AG+W+DVA++R +M++R + ++ GC
Sbjct: 418 IGKSAALRAIELAPDDSSSYVLLSNIYAKAGRWDDVAKIRLMMRQRGVKKIAGC 471
>gi|147866113|emb|CAN78822.1| hypothetical protein VITISV_006669 [Vitis vinifera]
Length = 599
Score = 273 bits (698), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 149/459 (32%), Positives = 239/459 (52%), Gaps = 34/459 (7%)
Query: 56 NAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALK 115
N++I Y + + FY +M G P+ T + + SCA+ ++ G H +
Sbjct: 149 NSMINGYVRRGWAYEALNFYREMKVEGIKPDEVTMIGVVSSCAQLEDLDLGRESHCYIEE 208
Query: 116 NGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHEL 175
NG+ +P+ N+L++MY G ++ AR +F M+ + ++SW ++ L
Sbjct: 209 NGLKLTVPLANALMDMYMKCGNLESARKLFDSMTNKTMVSWTTM---------------L 253
Query: 176 FDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARF 235
FD MP+++VV WN MI GY + +L LF EM ++ TM S L+AC +
Sbjct: 254 FDEMPDKDVVPWNAMIGGYVHANRGKEALALFNEMQAMNINPDEVTMVSCLSACSQLGAL 313
Query: 236 NEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGH 295
+ G +H Y + L N+ L TALID+Y+KC K+ A +VF + RN + W A+I G
Sbjct: 314 DVGIWIHHYIEKHELSLNVALGTALIDMYAKCGKITKAIQVFQELPGRNSLTWTAIISGL 373
Query: 296 CIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFY 355
+HG I F+ +++ S+ PDE+TF+G++ AC L+ EGRKYF QM +
Sbjct: 374 ALHGNAHGAIAYFSEMID-----NSVMPDEVTFLGLLSACCHGGLVEEGRKYFSQMSSKF 428
Query: 356 KIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVA 415
+ P HY CM +L A L EEAEE+++ MP + D +++W +L CR G V
Sbjct: 429 NLSPKLKHYSCMVDLLGRAGLLEEAEELIKSMPIEAD-----AVVWGALFFACRIHGNVL 483
Query: 416 MVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLK 475
M ER A + MDP D Y L N+Y A W++ + R+LM++R + + PGC +++
Sbjct: 484 MGERAASKLLQMDPHDSGIYVLLANMYGEAEMWKEAGKXRKLMRQRGVEKTPGCSSIEVN 543
Query: 476 EVVEKLKVGHFWRGGMKEEVNKMMECRQSRSLATVSKQL 514
+V + V R + ++ EC L +++QL
Sbjct: 544 GIVYEFIV----RDKSHPQSEQIYEC-----LIQLTRQL 573
Score = 155 bits (392), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 105/392 (26%), Positives = 183/392 (46%), Gaps = 60/392 (15%)
Query: 38 DYTVLVFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIK-NGFMPNSYTFVSLFGS 96
DY + NP TF N I+ + +S P + VV Y ++++ +G P++YT+ LF +
Sbjct: 29 DYCTNILFNTRNPNTFSWNVAIRGFLDSENPREAVVLYKRVLQCDGTKPDNYTYPLLFKA 88
Query: 97 CAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISW 156
CA+ + G G L G D ++ V N++I++
Sbjct: 89 CARLSLIRMGSEILGHVLHLGFDSDIFVSNAVIHLL------------------------ 124
Query: 157 NSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFR 216
V GD+ A ++FD R++VSWN MI+GY + G +L +REM G +
Sbjct: 125 -------VSCGDLDGARKMFDKSCVRDLVSWNSMINGYVRRGWAYEALNFYREMKVEGIK 177
Query: 217 GNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRV 276
++ TM V+++C + + GR H Y LK + L AL+D+Y KC +E A+++
Sbjct: 178 PDEVTMIGVVSSCAQLEDLDLGRESHCYIEENGLKLTVPLANALMDMYMKCGNLESARKL 237
Query: 277 FDSMA----------------DRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGS 320
FDSM D+++V WNAMI G+ + +E + LF + +
Sbjct: 238 FDSMTNKTMVSWTTMLFDEMPDKDVVPWNAMIGGYVHANRGKEALALFNEM-----QAMN 292
Query: 321 ISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEA 380
I+PDE+T + + AC + L G + I+ +++ N A + ++YA +A
Sbjct: 293 INPDEVTMVSCLSACSQLGALDVG-IWIHHYIEKHELSLNVALGTALIDMYAKCGKITKA 351
Query: 381 EEILRKMPEDNDNMSFESIMWVSLLSLCRFQG 412
++ +++P N S+ W +++S G
Sbjct: 352 IQVFQELPGRN------SLTWTAIISGLALHG 377
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 56/263 (21%), Positives = 111/263 (42%), Gaps = 33/263 (12%)
Query: 39 YTVLVFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCA 98
+T ++F + + NA+I Y ++ + + + +M P+ T VS +C+
Sbjct: 249 WTTMLFDEMPDKDVVPWNAMIGGYVHANRGKEALALFNEMQAMNINPDEVTMVSCLSACS 308
Query: 99 KTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNS 158
+ G ++ G H K+ + + + +LI+MY G + A +F ++ R+ ++W +
Sbjct: 309 QLGALDVGIWIHHYIEKHELSLNVALGTALIDMYAKCGKITKAIQVFQELPGRNSLTWTA 368
Query: 159 IVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGN 218
I+SG A H GN ++ F EM+ + +
Sbjct: 369 IISG-------LALH------------------------GNAHGAIAYFSEMIDNSVMPD 397
Query: 219 DKTMASVLTACGRSARFNEGRSVHG-YTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVF 277
+ T +L+AC EGR + + +L P + + ++DL + +E A+ +
Sbjct: 398 EVTFLGLLSACCHGGLVEEGRKYFSQMSSKFNLSPKLKHYSCMVDLLGRAGLLEEAEELI 457
Query: 278 DSMA-DRNLVCWNAMILGHCIHG 299
SM + + V W A+ IHG
Sbjct: 458 KSMPIEADAVVWGALFFACRIHG 480
Score = 40.4 bits (93), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 35/161 (21%), Positives = 69/161 (42%), Gaps = 8/161 (4%)
Query: 27 LLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPN 86
L+ A G + VF+ + + A+I + + ++ +MI N MP+
Sbjct: 338 LIDMYAKCGKITKAIQVFQELPGRNSLTWTAIISGLALHGNAHGAIAYFSEMIDNSVMPD 397
Query: 87 SYTFVSLFGSCAKTGCVERG-GMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMF 145
TF+ L +C G VE G ++ K + +L + ++++ G G ++ A +
Sbjct: 398 EVTFLGLLSACCHGGLVEEGRKYFSQMSSKFNLSPKLKHYSCMVDLLGRAGLLEEAEELI 457
Query: 146 VQMS-PRDLISWNSI-----VSGHVRSGDMSAAHELFDIMP 180
M D + W ++ + G+V G+ AA +L + P
Sbjct: 458 KSMPIEADAVVWGALFFACRIHGNVLMGE-RAASKLLQMDP 497
>gi|225450622|ref|XP_002278152.1| PREDICTED: pentatricopeptide repeat-containing protein At1g09190
[Vitis vinifera]
Length = 485
Score = 273 bits (697), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 161/473 (34%), Positives = 245/473 (51%), Gaps = 16/473 (3%)
Query: 3 QLLQIQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAY 62
QL QI AH++ L +N + + + Y LVF NP N++IK Y
Sbjct: 24 QLPQIHAHILRHHLHQSNQILS-HFISVCGALDKMGYANLVFHQTQNPNLLLFNSMIKGY 82
Query: 63 SNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFEL 122
S + ++ + QM G P+ +TF L SC +G + + V FE
Sbjct: 83 SLCGPSENSLLLFSQMKNRGIWPDEFTFAPLLKSC--SGICDNRIGKGVHGVVIVVGFER 140
Query: 123 --PVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMP 180
+ +I++Y G M+ A+ +F +M RD+I WN ++ G + GD+ LF M
Sbjct: 141 FSSIRIGIIDLYTSCGRMEDAKKVFDEMLDRDVIVWNMMIRGFCKVGDIEMGFRLFRQMR 200
Query: 181 ERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRS 240
+R+VVSWN MI+G +SG G +L+LFREM GF +D T+ ++L C R + G
Sbjct: 201 DRSVVSWNSMIAGLEQSGRDGEALELFREMWDHGFEPDDATVVTILPVCARLGAVDVGEW 260
Query: 241 VHGYTVRTSLKPNII-LDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHG 299
+H Y + L + I + +L+D Y KC +E A RVF+ M +N+V WNAMI G +G
Sbjct: 261 IHSYAESSRLLRDFISVGNSLVDFYCKCGILETAWRVFNEMPQKNVVSWNAMISGLTFNG 320
Query: 300 KPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKP 359
K E G LF ++N V P++ TF+GV+ C A L+ GR F M +K++P
Sbjct: 321 KGELGADLFEEMINKGV-----RPNDATFVGVLSCCAHAGLVERGRNLFTSMTVDHKMEP 375
Query: 360 NFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVER 419
H+ CM +L A EEA +++R MP M +++W SLLS R G V E
Sbjct: 376 KLEHFGCMVDLLARNGCMEEARDLVRTMP-----MRPNAVLWGSLLSAYRTIGDVKHAEC 430
Query: 420 LAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLV 472
K ++++P + Y L NVYA G+W++V +VR LMK++ + + PG +V
Sbjct: 431 AVKELIELEPWNSGNYVLLSNVYAEDGKWDEVEKVRALMKEKNIRKNPGQSMV 483
>gi|357516765|ref|XP_003628671.1| hypothetical protein MTR_8g063290 [Medicago truncatula]
gi|355522693|gb|AET03147.1| hypothetical protein MTR_8g063290 [Medicago truncatula]
Length = 659
Score = 273 bits (697), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 161/511 (31%), Positives = 265/511 (51%), Gaps = 53/511 (10%)
Query: 16 LFFNNSFWT----INLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSNSCVPDQG 71
+F+ NS I L++ A G P T VF +++ N +I++Y N+ D G
Sbjct: 44 IFYLNSHQNPSLGIKLMRSYAACGEPGLTRKVFDEMSDRNVVFYNVMIRSYVNNHRYDDG 103
Query: 72 VVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINM 131
++ + +M+ GF P++YT+ + +C+ + + G + HG LK G+DF L V N LI M
Sbjct: 104 LLVFREMVNGGFRPDNYTYPCVLKACSCSENLRYGLLIHGDVLKVGLDFNLFVGNGLIAM 163
Query: 132 YGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHEL---------------- 175
YG G + AR +F +M +D++SWNS+V+G+ + A E+
Sbjct: 164 YGKCGCLFEARRVFDEMIWKDVVSWNSMVAGYAHNMRFDDALEICREMEDYGQKPDGCTM 223
Query: 176 FDIMP---------------------ERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSG 214
+MP +N++SWN+MI Y K+ P ++ L+ +M K
Sbjct: 224 ASLMPAVANTSSENVLYVEKIFVNLERKNLISWNVMIRVYMKNSLPTQAVDLYLQMEKCR 283
Query: 215 FRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQ 274
+ T ASVL ACG + GR +H Y + L PN++L+ +LID+Y++C ++ A+
Sbjct: 284 VEPDAITFASVLPACGDLSALLLGRRIHEYVEKKKLCPNLLLENSLIDMYARCGCLDDAK 343
Query: 275 RVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICA 334
RVFD M R++ W ++I + + G+ + LFT ++N A PD I F+ ++ A
Sbjct: 344 RVFDRMKFRDVASWTSLISAYGMTGQGCNAVALFTEMLNSGQA-----PDSIAFVAILSA 398
Query: 335 CVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMP-EDNDN 393
C + LL EGR YF+QM D Y+I P HY C+ +L A +EA I+++MP E N+
Sbjct: 399 CSHSGLLDEGRIYFKQMTDDYRITPRIEHYACLVDLLGRAGRVDEAYNIIKQMPIEPNER 458
Query: 394 MSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVAR 453
+W +LLS CR + + A + + + P+ Y L N+YA AG+W++V
Sbjct: 459 ------VWATLLSSCRVFTNMDIGILAADNLLQLAPEQSGYYVLLSNIYAKAGRWKEVTE 512
Query: 454 VRELMKKRRMGRMPGCRLVDLKEVVEKLKVG 484
+R +MK++++ + PG V+L V G
Sbjct: 513 IRSVMKRKKIRKTPGISNVELNNQVHTFLAG 543
>gi|224124638|ref|XP_002330073.1| predicted protein [Populus trichocarpa]
gi|222871498|gb|EEF08629.1| predicted protein [Populus trichocarpa]
Length = 793
Score = 273 bits (697), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 142/429 (33%), Positives = 241/429 (56%), Gaps = 10/429 (2%)
Query: 56 NAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALK 115
+A+I Y + + ++ ++ + +M NG M + +S+ +C++ V G + HGL +K
Sbjct: 258 SALISCYEQNEMYEEALILFKEMNANGIMVDEVVVLSVLSACSRLLVVITGKLVHGLVVK 317
Query: 116 NGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHEL 175
G++ + + N+LI+MY + A+ +F + D ISWNS++SG+V+ G++ A L
Sbjct: 318 VGIETYVNLQNALIHMYSSCEEVVTAQKLFSESCCLDQISWNSMISGYVKCGEIEKARAL 377
Query: 176 FDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARF 235
FD MP+++ VSW+ MISGY++ +L LF+EM G + ++ + SV++AC A
Sbjct: 378 FDSMPDKDNVSWSAMISGYAQQDRFTETLVLFQEMQIEGTKPDETILVSVISACTHLAAL 437
Query: 236 NEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGH 295
++G+ +H Y + LK NIIL T LI++Y K VE A VF + ++ + WNA+ILG
Sbjct: 438 DQGKWIHAYIRKNGLKINIILGTTLINMYMKLGCVEDALEVFKGLEEKGVSTWNALILGL 497
Query: 296 CIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFY 355
++G ++ +K F+ + ++P+EITF+ V+ AC L+ EG ++F MI +
Sbjct: 498 AMNGLVDKSLKTFSEM-----KEHGVTPNEITFVAVLGACRHMGLVDEGHRHFNSMIQEH 552
Query: 356 KIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVA 415
KI PN HY CM +L A + +EAEE++ MP M+ + W +LL C+ G
Sbjct: 553 KIGPNIKHYGCMVDLLGRAGMLKEAEELIESMP-----MAPDVSTWGALLGACKKYGDNE 607
Query: 416 MVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLK 475
ER+ + V++ P L N+YA G W DV VR +M++ + + PGC +++
Sbjct: 608 TGERIGRKLVELHPDHDGFNVLLSNIYASKGNWVDVLEVRGMMRQHGVVKTPGCSMIEAH 667
Query: 476 EVVEKLKVG 484
V + G
Sbjct: 668 GRVHEFLAG 676
Score = 184 bits (467), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 157/575 (27%), Positives = 256/575 (44%), Gaps = 106/575 (18%)
Query: 1 MKQLLQIQAHLITSGLFFNNSFWTINLLKHSAD--FGSPDYTVLVFKCINNPGTFCVNAV 58
+KQ QI + +I SG FF +SF LLK S + F + + + +F I NP F N +
Sbjct: 39 IKQFNQILSQMILSG-FFKDSFAASRLLKFSTELPFININQSYQIFSHIENPNGFICNTM 97
Query: 59 IKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGV 118
+K Y P + + Y M+++ ++YT+ LF SC+ G LK G
Sbjct: 98 MKGYMQRNSPCKAIWVYKFMLESNVAADNYTYPILFQSCSIRLAEFDGKCIQDHVLKVGF 157
Query: 119 DFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDI 178
D ++ + N+LINMY G + AR +F S D++SWNS+++G+V G++ A +++D
Sbjct: 158 DSDVYIQNTLINMYAVCGNLSDARKVFDGSSVLDMVSWNSMLAGYVLVGNVEEAKDVYDR 217
Query: 179 MPERNVVSWNIMISGYSKSGN--PGC-----------------------------SLKLF 207
MPERNV++ N MI + K GN C +L LF
Sbjct: 218 MPERNVIASNSMIVLFGKKGNVEEACKLFNEMKQKDLVSWSALISCYEQNEMYEEALILF 277
Query: 208 REMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKC 267
+EM +G ++ + SVL+AC R G+ VHG V+ ++ + L ALI +YS C
Sbjct: 278 KEMNANGIMVDEVVVLSVLSACSRLLVVITGKLVHGLVVKVGIETYVNLQNALIHMYSSC 337
Query: 268 QKVEVAQR-------------------------------VFDSMADRNLVCWNAMILGHC 296
++V AQ+ +FDSM D++ V W+AMI G+
Sbjct: 338 EEVVTAQKLFSESCCLDQISWNSMISGYVKCGEIEKARALFDSMPDKDNVSWSAMISGYA 397
Query: 297 IHGKPEEGIKLFTAL-VNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFY 355
+ E + LF + + GT PDE + VI AC L +G K+ I
Sbjct: 398 QQDRFTETLVLFQEMQIEGT------KPDETILVSVISACTHLAALDQG-KWIHAYIRKN 450
Query: 356 KIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVA 415
+K N + N+Y E+A E+ + + E + W +L+ G
Sbjct: 451 GLKINIILGTTLINMYMKLGCVEDALEVFKGLEEKGVS------TWNALILGLAMNG--- 501
Query: 416 MVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRE-------LMKKRRMG---R 465
+V++ K+F +M + + + AV G + V E ++++ ++G +
Sbjct: 502 LVDKSLKTFSEMKEHGVTPNE--ITFVAVLGACRHMGLVDEGHRHFNSMIQEHKIGPNIK 559
Query: 466 MPGCRLVDLKEVVEKLKVGHFWRGGMKEEVNKMME 500
GC +VDL R GM +E +++E
Sbjct: 560 HYGC-MVDL-----------LGRAGMLKEAEELIE 582
Score = 55.1 bits (131), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 58/245 (23%), Positives = 114/245 (46%), Gaps = 16/245 (6%)
Query: 7 IQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSNSC 66
I A++ +GL N T L+ G + + VFK + G NA+I + +
Sbjct: 443 IHAYIRKNGLKINIILGT-TLINMYMKLGCVEDALEVFKGLEEKGVSTWNALILGLAMNG 501
Query: 67 VPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGG-MCHGLALKNGVDFELPVM 125
+ D+ + + +M ++G PN TFV++ G+C G V+ G + + ++ + +
Sbjct: 502 LVDKSLKTFSEMKEHGVTPNEITFVAVLGACRHMGLVDEGHRHFNSMIQEHKIGPNIKHY 561
Query: 126 NSLINMYGCFGAMDCARNMF--VQMSPRDLISWNSIVSGHVRSGDMSAAH----ELFDIM 179
++++ G G + A + + M+P D+ +W +++ + GD +L ++
Sbjct: 562 GCMVDLLGRAGMLKEAEELIESMPMAP-DVSTWGALLGACKKYGDNETGERIGRKLVELH 620
Query: 180 PERNVVSWNIMISG-YSKSGNPGCSLKLFREMMKSGFRGNDKTMA-SVLTACGRSARFNE 237
P+ + +N+++S Y+ GN L++ R MM+ G KT S++ A GR F
Sbjct: 621 PDHD--GFNVLLSNIYASKGNWVDVLEV-RGMMRQ--HGVVKTPGCSMIEAHGRVHEFLA 675
Query: 238 GRSVH 242
G H
Sbjct: 676 GDKTH 680
>gi|242085334|ref|XP_002443092.1| hypothetical protein SORBIDRAFT_08g008260 [Sorghum bicolor]
gi|241943785|gb|EES16930.1| hypothetical protein SORBIDRAFT_08g008260 [Sorghum bicolor]
Length = 655
Score = 272 bits (696), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 150/462 (32%), Positives = 244/462 (52%), Gaps = 15/462 (3%)
Query: 17 FFNNSFWTINLLKH--SADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSNSCVPDQG-VV 73
F S N L H ++ PD L F + + ++ Y+ +PD+ V
Sbjct: 161 FIGQSVLVGNALVHMYASSMSLPDARKL-FDEMADRDVVSWTTLVDGYARGGLPDEAWRV 219
Query: 74 FYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYG 133
F ++ G PN T V+ + + G + G M H +++GV + + N+L++M+G
Sbjct: 220 FCRMVVAGGGWPNEVTLVAAASAAGQIGLLGLGRMVHQCVVESGVRMSVNLENALVDMFG 279
Query: 134 CFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISG 193
G + A+ +F M +D+ SW S+VS + + GD+ A +LF +P RN VSW+ M++
Sbjct: 280 KCGCVASAKEIFDGMPIKDVYSWTSMVSAYAKCGDLENAGKLFKEIPNRNAVSWSCMVAA 339
Query: 194 YSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVH-GYTVRTSLKP 252
YS++ P ++++F +M+ +G D T+ SVL+AC + + GR ++ Y V ++
Sbjct: 340 YSQANLPEEAMRIFNDMIAAGVEPIDATLVSVLSACAQLGCLDVGRCLYDAYIVSHKVEL 399
Query: 253 NIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALV 312
+ L A ID+++KC V A R+F +M D+N+V WN MI+ H +HG+ EE + LF
Sbjct: 400 TVNLSNAFIDMFAKCGDVGAASRLFRNMEDKNVVSWNTMIVAHALHGQSEEALHLFQKF- 458
Query: 313 NGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYA 372
I PDEIT+IGV+ AC + L++EGR +F++M Y I+P HY CM +L
Sbjct: 459 ----KAIGIFPDEITYIGVLSACSHSGLVSEGRYHFKEMKIVYGIEPRAEHYACMIDLLG 514
Query: 373 GAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDF 432
L EEA E+ R MP D W +LL+ CR G V + + A V +DP D
Sbjct: 515 KVGLLEEAFEVARSMPVGADEAG-----WGALLNACRMHGNVEIGKCAADKLVGLDPSDS 569
Query: 433 SRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDL 474
Y + +YA +W V +R +M+ R + + PGC +++
Sbjct: 570 GIYVLMSQIYASKSKWGQVKMIRTVMRDRGVKKNPGCSSIEV 611
Score = 102 bits (254), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 82/393 (20%), Positives = 166/393 (42%), Gaps = 70/393 (17%)
Query: 40 TVLVFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAK 99
++ +C P + + +++ + + P + + +++++ ++ T V F A
Sbjct: 85 AAVLAQCAEGPNAYMLATMMRGFLRAGKPAHALALFRRVLRDRLPADARTIV--FAVKAA 142
Query: 100 TGCVERGGMCHGLALKNG-VDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNS 158
T H +A K G + + V N+L++MY ++ AR +F +M+ RD++SW +
Sbjct: 143 TTSSSPAEAIHCVAFKRGFIGQSVLVGNALVHMYASSMSLPDARKLFDEMADRDVVSWTT 202
Query: 159 IVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGN 218
+V G+ R G +P+ +W + R ++ G N
Sbjct: 203 LVDGYARGG-----------LPDE---AWRVFC----------------RMVVAGGGWPN 232
Query: 219 DKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFD 278
+ T+ + +A G+ GR VH V + ++ ++ L+ AL+D++ KC V A+ +FD
Sbjct: 233 EVTLVAAASAAGQIGLLGLGRMVHQCVVESGVRMSVNLENALVDMFGKCGCVASAKEIFD 292
Query: 279 SM-------------------------------ADRNLVCWNAMILGHCIHGKPEEGIKL 307
M +RN V W+ M+ + PEE +++
Sbjct: 293 GMPIKDVYSWTSMVSAYAKCGDLENAGKLFKEIPNRNAVSWSCMVAAYSQANLPEEAMRI 352
Query: 308 FTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCM 367
F N +A G + P + T + V+ AC + L GR + I +K++
Sbjct: 353 F----NDMIAAG-VEPIDATLVSVLSACAQLGCLDVGRCLYDAYIVSHKVELTVNLSNAF 407
Query: 368 ANLYAGAELTEEAEEILRKMPEDNDNMSFESIM 400
+++A A + R M ED + +S+ +++
Sbjct: 408 IDMFAKCGDVGAASRLFRNM-EDKNVVSWNTMI 439
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 60/266 (22%), Positives = 125/266 (46%), Gaps = 17/266 (6%)
Query: 190 MISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTS 249
M+ G+ ++G P +L LFR +++ + +T+ + A S+ E + R
Sbjct: 103 MMRGFLRAGKPAHALALFRRVLRDRLPADARTIVFAVKAATTSSSPAEAIHCVAFK-RGF 161
Query: 250 LKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFT 309
+ ++++ AL+ +Y+ + A+++FD MADR++V W ++ G+ G P+E ++F
Sbjct: 162 IGQSVLVGNALVHMYASSMSLPDARKLFDEMADRDVVSWTTLVDGYARGGLPDEAWRVFC 221
Query: 310 ALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDF-YKIKPNFAHYWCMA 368
+V VAGG P+E+T + A + LL GR + +++ ++ N + +
Sbjct: 222 RMV---VAGGGW-PNEVTLVAAASAAGQIGLLGLGRMVHQCVVESGVRMSVNLEN--ALV 275
Query: 369 NLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMD 428
+++ A+EI MP + W S++S G +E K F ++
Sbjct: 276 DMFGKCGCVASAKEIFDGMPIK------DVYSWTSMVSAYAKCGD---LENAGKLFKEIP 326
Query: 429 PQDFSRYQFLLNVYAVAGQWEDVARV 454
++ + ++ Y+ A E+ R+
Sbjct: 327 NRNAVSWSCMVAAYSQANLPEEAMRI 352
>gi|225434183|ref|XP_002275535.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
chloroplastic-like [Vitis vinifera]
Length = 513
Score = 272 bits (696), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 157/485 (32%), Positives = 262/485 (54%), Gaps = 14/485 (2%)
Query: 2 KQLLQIQAHLITSG-LFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIK 60
KQLLQIQA LIT+ L + + + L+ A + + L+F + NP F NA+IK
Sbjct: 25 KQLLQIQAQLITNPPLSLHPNLIAVKLIGACAANANLYHAQLIFAQLPNPNVFSWNAIIK 84
Query: 61 AYSNSCVPDQGV-VFYLQM-IKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGV 118
A+ N + + F Q+ + + PN Y + SL +CA + G H + +K+G+
Sbjct: 85 AHINCGAWEHALNCFNRQLSLPSAPNPNEYIYTSLIKACAGLEAIADGLKVHAVVIKSGL 144
Query: 119 DFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDI 178
D + + SL++MY F A +F +M RD++SWN++VSG+ GD+ +A +FD
Sbjct: 145 DNNIHLGTSLVDMYFKFREPASAGQVFDEMPLRDVVSWNTMVSGYCLCGDLESARRVFDQ 204
Query: 179 MPERNVVSWNIMISGYSKSGNPGCSLKLFREMMK-SGFRGNDKTMASVLTACGRSARFNE 237
M ER+V+SWN MI GY ++G ++++F EM K G +D T+ SVL+AC +
Sbjct: 205 MLERDVISWNAMIGGYVQNGKYSDAIEVFHEMQKVGGVVPDDVTLVSVLSACAHVGALDF 264
Query: 238 GRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCI 297
GR + + N+ L ALID+Y+KC +E A+R+FD M +R+++ W+ MI G
Sbjct: 265 GRWIDRFVGWRGRGLNLYLGNALIDMYAKCGTMEEARRIFDGMRERDVISWSTMICGSGT 324
Query: 298 HGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKI 357
HG +E ++ ++ V P+E+TF+G++ AC A L+ +G + F +MI Y+I
Sbjct: 325 HGDADEAFGYYSKMLECGV-----KPNEVTFMGLLSACSHAGLVDKGIELFSRMIQEYRI 379
Query: 358 KPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMV 417
P HY C+ +L + A +EAE+++ MP + I+W +LL CR
Sbjct: 380 VPKVGHYGCVIDLLSRAGRLDEAEDLINSMP-----IEPNVIVWGALLGGCRIHKDFRRG 434
Query: 418 ERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLKEV 477
ER+A+ +++D + Y ++ A G+ +D A M+ + + + PGC +++
Sbjct: 435 ERVAQHLLELDSEYTGSYVYIAGAKASVGRVDDAANCWLRMQHKGIIKDPGCSKIEVHNT 494
Query: 478 VEKLK 482
V + K
Sbjct: 495 VHEFK 499
>gi|359491266|ref|XP_002280289.2| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
[Vitis vinifera]
Length = 663
Score = 272 bits (696), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 161/489 (32%), Positives = 260/489 (53%), Gaps = 21/489 (4%)
Query: 1 MKQLLQIQAHLITSGLFFNNSFWTINLLKHS-ADFGSPDYTVLVFKCINN-PGTFCVNAV 58
+ Q+ QI A ++T GL N S + L HS + + +VF + P T N +
Sbjct: 68 LTQIKQIHAQVVTHGLAQNTSL--LGPLIHSYIGCRNLSFARIVFDQFPSLPPTIIWNLM 125
Query: 59 IKAYSNSCVPDQGVVFYLQMIKNGFMPNS---YTFVSLFGSCAKTGCVE-RGGMCHGLAL 114
I+AYS + + + + QM+ +G P S YTF +F +C++ + G HG+ +
Sbjct: 126 IQAYSKTPSSQESLYLFHQMLAHG-RPTSADKYTFTFVFTACSRHPTLRGYGENVHGMVV 184
Query: 115 KNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHE 174
K+G + ++ V NSL+NMY F M A+ +F +M RD+I+W S+V G+ G++ A E
Sbjct: 185 KDGYESDIFVGNSLVNMYSIFSRMVDAKRVFDEMPQRDVITWTSVVKGYAMRGELVRARE 244
Query: 175 LFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMM-KSGFRGNDKTMASVLTACGRSA 233
LFD+MP RN VSW +M++GY +L+ F +M+ + N+ + S+L+AC
Sbjct: 245 LFDMMPGRNDVSWAVMVAGYVGHRFYNEALQCFNDMLCHDEVKPNEAVLVSILSACAHLG 304
Query: 234 RFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMIL 293
++G+ +H Y + + + + TALID+Y+KC +++ A+RVFD + R+L+ W +MI
Sbjct: 305 ALDQGKWIHVYIDKNRILLSSNISTALIDMYAKCGRIDCARRVFDGLHKRDLLTWTSMIS 364
Query: 294 GHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMID 353
G +HG E + F+ ++ PD+IT +GV+ C + L+ EG F MI
Sbjct: 365 GLSMHGLGAECLWTFSEML-----AEGFKPDDITLLGVLNGCSHSGLVEEGLSIFHDMIP 419
Query: 354 FYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGA 413
+ I P HY C+ +L A E A E ++ MP + D + W +LLS CR G
Sbjct: 420 LWGIVPKLEHYGCLIDLLGRAGRLESAFEAIKSMPMEPD-----VVAWRALLSACRIHGD 474
Query: 414 VAMVERLAKSFVDMDPQDF-SRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLV 472
V + ER+ ++ P Y L N+YA GQWE V +VR+ M +R PGC +
Sbjct: 475 VDLGERIINHIAELCPGSHGGGYVLLSNLYASMGQWESVTKVRKAMSQRGSEGCPGCSWI 534
Query: 473 DLKEVVEKL 481
++ VV +
Sbjct: 535 EIDGVVHEF 543
>gi|357127483|ref|XP_003565409.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g15930-like [Brachypodium distachyon]
Length = 552
Score = 272 bits (696), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 157/480 (32%), Positives = 253/480 (52%), Gaps = 12/480 (2%)
Query: 7 IQAHLITSGLFFNNSFWTINLLKHSA-DFGSPDYTVLVFKCINNPGTFCV-NAVIKAYSN 64
+ AH++ G+ N + +L ++A G+ T+L T V NA+I +
Sbjct: 41 VHAHVVKFGMELNAHVASSLVLMYAARGDGAVARTLLDAWPARGGDTPVVWNALISGHRR 100
Query: 65 SCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPV 124
S ++ M++ G +P T++++ +C K + G H + +GV +L V
Sbjct: 101 SRQFRLSCCSFVDMVRTGVVPTPVTYITVLSACGKDKYIWLGMQVHKCVVASGVLPDLKV 160
Query: 125 MNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNV 184
N+LI+MY MD A +F M R+ +SW S++SG +R G + A LFD MPER+
Sbjct: 161 GNALIDMYAECSEMDAAWELFEGMEVRNTVSWTSVISGFLRLGQVDQARTLFDCMPERDT 220
Query: 185 VSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGY 244
VSW MI GY ++G +L++FREM S R ++ TM SV+TAC + G Y
Sbjct: 221 VSWTAMIDGYVQAGQFREALEMFREMQFSKVRADEFTMVSVVTACAQLGALETGEWARIY 280
Query: 245 TVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEG 304
R +K + + AL+D+YSKC ++ A VF M R+ W A+ILG ++G EE
Sbjct: 281 MSRHGIKMDTFVGNALVDMYSKCGSIQQALGVFKEMYIRDKFTWTAVILGLAVNGHGEEA 340
Query: 305 IKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHY 364
I +F ++ A PDE+TFIGV+ AC A L+ +GR +F M Y I PN H+
Sbjct: 341 INMFYRMLRVFEA-----PDEVTFIGVLTACTHAGLVDKGRDFFLSMTGSYGIAPNVMHF 395
Query: 365 WCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSF 424
C+ +L A +EA E + MP M S +W +LL+ CR G + + A+
Sbjct: 396 GCLIDLLGRAGKLKEALETIGNMP-----MRPNSAIWGTLLAACRVHGNSEIGQLAAEHL 450
Query: 425 VDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLKEVVEKLKVG 484
+++D ++ Y L N+YA + +WEDV R+R+++ ++ + + PGC L+++ + + G
Sbjct: 451 LELDTENGMVYILLSNLYAKSNRWEDVRRLRQVIMEKGIKKEPGCSLIEMNGTIHEFIAG 510
>gi|297797743|ref|XP_002866756.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297312591|gb|EFH43015.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 649
Score = 272 bits (696), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 147/487 (30%), Positives = 254/487 (52%), Gaps = 16/487 (3%)
Query: 2 KQLLQIQAHLITSGLFFNN----SFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNA 57
++L QI A ++ +GL ++ F + + S+DF Y +VF + P TF N
Sbjct: 57 EELKQIHARMLKTGLIQDSYAITKFLSCCISSTSSDF--LPYAQIVFDGFDRPDTFLWNL 114
Query: 58 VIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNG 117
+I+ +S S P++ ++ Y +M+ N+YTF SL +C+ +E H K G
Sbjct: 115 MIRGFSCSDEPERSLLLYQRMLCCSAPHNAYTFPSLLKACSNLSALEETTQIHAQITKLG 174
Query: 118 VDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFD 177
+ ++ +NSLIN Y G A +F ++ D +SWNS++ G+ ++G M A LF
Sbjct: 175 YENDVYAVNSLINSYAATGNFKLAHLLFDRIPKPDAVSWNSVIKGYAKAGKMDIALTLFR 234
Query: 178 IMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNE 237
M E+N +SW MISGY ++G +L+LF EM S ++ ++A+ L+AC + +
Sbjct: 235 KMVEKNAISWTTMISGYVQAGMHKEALQLFHEMQNSDVEPDNVSLANALSACAQLGALEQ 294
Query: 238 GRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCI 297
G+ +H Y +T ++ + +L LID+Y+KC + A VF ++ +++ W A+I G+
Sbjct: 295 GKWIHSYLTKTRIRMDSVLGCVLIDMYAKCGDMGEALEVFKNIQRKSVQAWTALISGYAY 354
Query: 298 HGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKI 357
HG E I F + I P+ ITF V+ AC L+ EG+ F M Y +
Sbjct: 355 HGHGREAISKFMEMQK-----MGIKPNVITFTTVLTACSYTGLVEEGKLIFYNMERDYNL 409
Query: 358 KPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMV 417
KP HY C+ +L + A L +EA+ +++MP + +++W +LL CR + +
Sbjct: 410 KPTIEHYGCVVDLLSRAGLLDEAKRFIQEMP-----LKPNAVIWGALLKACRIHKNIELG 464
Query: 418 ERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLKEV 477
E + + + +DP RY N++A+ +W+ A R LMK++ + ++PGC + L+
Sbjct: 465 EEIGEILIAIDPYHGGRYVHKANIHAMGKKWDKAAETRRLMKEQGVAKVPGCSTISLEGT 524
Query: 478 VEKLKVG 484
+ G
Sbjct: 525 THEFLAG 531
>gi|297795617|ref|XP_002865693.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297311528|gb|EFH41952.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 640
Score = 272 bits (696), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 172/508 (33%), Positives = 265/508 (52%), Gaps = 39/508 (7%)
Query: 1 MKQLLQIQAHLITSGLFFNNSFWTINLLK-------HSADFGSPDYTVLVFKCINNPGTF 53
++ L QI A I SG ++ +L+ H D DY +F + F
Sbjct: 29 IRDLSQIHAVFIKSGQI-RDTLAAAEILRFCATSDLHHRDL---DYAHKIFNQMPQRNCF 84
Query: 54 CVNAVIKAYSNSCVPDQ--GVVFYLQMIKNGFM-PNSYTFVSLFGSCAKTGCVERGGMCH 110
N +I+ +S S + + +M+ + F+ PN +TF S+ +CAKTG +++G H
Sbjct: 85 SWNTIIRGFSESDEDKALIAITLFCEMMSDEFIEPNRFTFPSVLKACAKTGKIQQGKQIH 144
Query: 111 GLALKNGVDFELPVMNSLINMYGCFGAMDCA----------RNMFVQMSPR----DLISW 156
GLALK G + VM++L+ MY G M A R M + + R +++ W
Sbjct: 145 GLALKYGFGGDEFVMSNLVRMYVICGLMKDACVLFYKNIIEREMVMMIDRRKRDGEVVLW 204
Query: 157 NSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMK-SGF 215
N ++ G++R GD AA LFD M +R+VVSWN MISGYS++G ++++FREM K
Sbjct: 205 NVMIDGYMRLGDCKAARMLFDKMRQRSVVSWNTMISGYSQNGFFKDAVEVFREMKKGEDI 264
Query: 216 RGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQR 275
R N T+ SVL A R G +H Y + ++ + +L +ALID+YSKC +E A
Sbjct: 265 RPNYVTLVSVLPAVSRLGSLELGEWLHLYAEDSGIRIDDVLGSALIDMYSKCGIIEKAIM 324
Query: 276 VFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICAC 335
VF+ + N++ W+AMI G IHG+ + I F + V P ++ +I ++ AC
Sbjct: 325 VFERLPRENVITWSAMINGFAIHGQAGDAIDCFCKMRQAGV-----RPSDVAYINLLTAC 379
Query: 336 VRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMS 395
A L+ EGR+YF QM+ ++P HY CM +L L +EAEE + MP D+
Sbjct: 380 SHAGLVEEGRRYFSQMVSVDGLEPRIEHYGCMVDLLGRLGLLDEAEEFILNMPIKPDD-- 437
Query: 396 FESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVR 455
++W +LL CR V M +R+A +DM P D Y L N+YA G W +V+ +R
Sbjct: 438 ---VIWKALLGACRMHRNVEMGKRVANILMDMVPHDSGAYVALSNMYASQGNWSEVSEMR 494
Query: 456 ELMKKRRMGRMPGCRLVDLKEVVEKLKV 483
MK+ + + PGC +D+ V+ + V
Sbjct: 495 LRMKEMDIRKDPGCSWIDIDGVLHEFLV 522
>gi|395146511|gb|AFN53666.1| hypothetical protein [Linum usitatissimum]
Length = 850
Score = 272 bits (696), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 149/472 (31%), Positives = 251/472 (53%), Gaps = 15/472 (3%)
Query: 18 FNNSFWTINLLKH-SADFGSPDYTVLVFKCI--NNPGTFCVNAVIKAYSNSCVPDQGVVF 74
F + + +N L H A G D LVF+ I NN N+++ + PD+ +
Sbjct: 271 FGDDVFVLNSLIHFYASCGHLDLAYLVFEMIEGNNKDIVSWNSMVTGFVQGGYPDKALDL 330
Query: 75 YLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGC 134
+ +M G PN+ T VS+ +CAKT + G +N + L V N+ I+M+
Sbjct: 331 FERMRNEGVHPNAVTMVSVMSACAKTMNLTLGRKVCDYIDRNEMMMNLNVCNATIDMFVK 390
Query: 135 FGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGY 194
G ++ AR +F M RD++SW +I+ G+ + + A ++FD MP +++ +WN++ISGY
Sbjct: 391 CGEVEIARGLFDNMEKRDVVSWTTIIDGYAKMSEHGIARDIFDSMPRKDIPAWNVLISGY 450
Query: 195 SKSGNPGCSLKLFREMM--KSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKP 252
+SG P +L +FRE+ KSG R + T+ S L+AC + + G +HGY + ++
Sbjct: 451 EQSGRPKEALAIFRELQLTKSGARPDQVTLLSTLSACAQLGAMDIGEWIHGYIKKERIQL 510
Query: 253 NIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALV 312
N L T+LID+YSK VE A VF S+ ++++ W+AMI G +HG+ E I+LF +
Sbjct: 511 NRNLATSLIDMYSKSGDVEKAIEVFHSIGNKDVFVWSAMIAGLAMHGRGEAAIELFLDMQ 570
Query: 313 NGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYA 372
V P+ +TF ++CAC + L+ EG++ F +M Y + P HY CM ++
Sbjct: 571 ETQV-----KPNSVTFTNLLCACSHSGLVDEGKRLFDEMERVYGVVPKTKHYSCMVDVLG 625
Query: 373 GAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDF 432
A EEA + + MP ++ + +W +LL C G + + E+ ++++P +
Sbjct: 626 RAGHLEEALKFIEGMP-----LAPSASVWGALLGACCIHGNLELAEKACSRLLEIEPGNH 680
Query: 433 SRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLKEVVEKLKVG 484
Y L N+YA G WE V+ +R+ M+ + + GC +++ V + VG
Sbjct: 681 GAYVLLSNLYAKTGDWEGVSELRQQMRDSGLKKETGCSSIEIDGTVHEFIVG 732
Score = 150 bits (378), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 118/462 (25%), Positives = 204/462 (44%), Gaps = 81/462 (17%)
Query: 2 KQLLQIQAHLITSGLFFNNSFWTINLLKHSA--DFGSPDYTVLVFKCINNPGTFCVNAVI 59
KQL QI A ++ + ++ + L +A F + DY VF I P + N +I
Sbjct: 153 KQLKQIHAQMLRTNKL-HDPYAASELFTAAAFSSFSALDYARKVFDQIPQPNLYSWNILI 211
Query: 60 KAYSNSCVPDQGVVFYLQMIKNG-FMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGV 118
+A + S P Q V+ +++M+ + F PN +TF L + A+ C G HG+A+K
Sbjct: 212 RALATSSDPIQSVLVFIRMLHDSPFGPNKFTFPVLIKAVAERRCFLVGKAVHGMAIKTSF 271
Query: 119 DFELPVMNSLINMYGCFGAMDCARNMF--VQMSPRDLISWNSIVSGHVRSGDMSAAHELF 176
++ V+NSLI+ Y G +D A +F ++ + +D++SWNS+V+G V
Sbjct: 272 GDDVFVLNSLIHFYASCGHLDLAYLVFEMIEGNNKDIVSWNSMVTGFV------------ 319
Query: 177 DIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFN 236
+ G P +L LF M G N TM SV++AC ++
Sbjct: 320 -------------------QGGYPDKALDLFERMRNEGVHPNAVTMVSVMSACAKTMNLT 360
Query: 237 EGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLV---------- 286
GR V Y R + N+ + A ID++ KC +VE+A+ +FD+M R++V
Sbjct: 361 LGRKVCDYIDRNEMMMNLNVCNATIDMFVKCGEVEIARGLFDNMEKRDVVSWTTIIDGYA 420
Query: 287 ---------------------CWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDE 325
WN +I G+ G+P+E + +F L + PD+
Sbjct: 421 KMSEHGIARDIFDSMPRKDIPAWNVLISGYEQSGRPKEALAIFREL---QLTKSGARPDQ 477
Query: 326 ITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILR 385
+T + + AC + + G ++ I +I+ N + ++Y+ + E+A E+
Sbjct: 478 VTLLSTLSACAQLGAMDIG-EWIHGYIKKERIQLNRNLATSLIDMYSKSGDVEKAIEVFH 536
Query: 386 KMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDM 427
+ N ++ S M L R + A+ + F+DM
Sbjct: 537 SI--GNKDVFVWSAMIAGLAMHGRGEAAIEL-------FLDM 569
>gi|242073754|ref|XP_002446813.1| hypothetical protein SORBIDRAFT_06g023080 [Sorghum bicolor]
gi|241937996|gb|EES11141.1| hypothetical protein SORBIDRAFT_06g023080 [Sorghum bicolor]
Length = 547
Score = 272 bits (696), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 149/488 (30%), Positives = 254/488 (52%), Gaps = 19/488 (3%)
Query: 7 IQAHLITSGLFFNNSFWTINLLKHSAD-FGSPDYTVLVFKCINNPGTFCVNAVIKAYSNS 65
++AH + L + S + + H + G + VF + P NA+IKAY+ +
Sbjct: 27 LRAHGLAVRLCLSQSSYVATQIVHVCNGHGRAAHAARVFAHVPAPNLHLHNAMIKAYAQN 86
Query: 66 CVPDQGVVFYLQMIK--------NGF-MPNSYTFVSLFGSCAKTGCVERGGMCHGLALKN 116
+ V Y++M++ GF + + +T+ L +C + G H ++
Sbjct: 87 HLHRDAVEVYVRMLRCLPDPSSSGGFSVGDRFTYPFLLKACGGLAASQLGRQVHAHVARS 146
Query: 117 GVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELF 176
G + V NSLI MY G + AR +F M +D +SWN+++S H R G M A ELF
Sbjct: 147 GCESHAIVQNSLIEMYTRCGDLSLARKVFDGMREKDAVSWNTLISAHARMGQMRKARELF 206
Query: 177 DIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFN 236
MP++ VVSW ++SGY+ G+ ++++FR+M GF +D ++ +VL AC +
Sbjct: 207 HSMPDKTVVSWTALVSGYTAVGDFAGAVEVFRQMQMEGFEPDDVSIVAVLPACAQLGALE 266
Query: 237 EGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHC 296
GR ++ Y + + I + AL+++Y+KC +E A ++F M++++++ W+ I G
Sbjct: 267 LGRWIYAYCNKHGMLGKIYICNALMEMYAKCGCIEEALQLFHGMSEKDVISWSTAIGGLA 326
Query: 297 IHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYK 356
HG+ E +KLF + G + P+ ITF+G++ AC A LL EG +YF +M + Y
Sbjct: 327 AHGRAREAVKLFEVMDR----EGRVMPNGITFVGLLSACSHAGLLDEGLRYFDRMKEEYG 382
Query: 357 IKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAM 416
++P+ HY C+ +L + + A + + MP D +W SLLS CR V
Sbjct: 383 VEPSVEHYGCVVDLLGRSGRIQRALDTIGGMPIPPDGK-----IWGSLLSACRSHSDVDT 437
Query: 417 VERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLKE 476
A+ V+++P+D L NVYA AG+W +VA R+ ++ R + PGC ++++
Sbjct: 438 AVVAAERLVELEPEDVGNLVMLANVYAAAGRWGNVASTRKEIRSRSTRKTPGCSMIEVDN 497
Query: 477 VVEKLKVG 484
VV + G
Sbjct: 498 VVREFVAG 505
>gi|224141765|ref|XP_002324235.1| predicted protein [Populus trichocarpa]
gi|222865669|gb|EEF02800.1| predicted protein [Populus trichocarpa]
Length = 736
Score = 272 bits (695), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 148/432 (34%), Positives = 231/432 (53%), Gaps = 44/432 (10%)
Query: 56 NAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGC-VERGGMCHGLAL 114
NA+I Y+ S ++ + F+ +M + PN T +S+ +CA++G ++ G
Sbjct: 229 NAMISGYAQSGRVEEAMAFFEEMRRAKVTPNVSTMLSVLSACAQSGSSLQLGNWVRSWIE 288
Query: 115 KNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHE 174
G+ + ++N LI+MY V+ GD+ A
Sbjct: 289 DRGLGSNIRLVNGLIDMY-------------------------------VKCGDLEEASN 317
Query: 175 LFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSAR 234
LF+ + ++NVVSWN+MI GY+ +L LFR MM+S ND T S+L AC
Sbjct: 318 LFEKIQDKNVVSWNVMIGGYTHMSCYKEALGLFRRMMQSNIDPNDVTFLSILPACANLGA 377
Query: 235 FNEGRSVHGYTVRT--SLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMI 292
+ G+ VH Y + S+K + L T+LID+Y+KC + VA+R+FD M ++L WNAMI
Sbjct: 378 LDLGKWVHAYVDKNMKSMKNTVALWTSLIDMYAKCGDLAVAKRIFDCMNTKSLATWNAMI 437
Query: 293 LGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMI 352
G +HG + + LF+ + + PD+ITF+GV+ AC A LL+ GR+YF MI
Sbjct: 438 SGFAMHGHTDTALGLFSRMTSE-----GFVPDDITFVGVLTACKHAGLLSLGRRYFSSMI 492
Query: 353 DFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQG 412
YK+ P HY CM +L+ A L +EAE +++ M M + +W SLL CR
Sbjct: 493 QDYKVSPKLPHYGCMIDLFGRAGLFDEAETLVKNM-----EMKPDGAIWCSLLGACRIHR 547
Query: 413 AVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLV 472
+ + E +AK +++P++ S Y L N+YA AG+WEDVA++R + RM ++PGC +
Sbjct: 548 RIELAESVAKHLFELEPENPSAYVLLSNIYAGAGRWEDVAKIRTRLNDNRMKKVPGCSSI 607
Query: 473 DLKEVVEKLKVG 484
++ VV + VG
Sbjct: 608 EVDSVVHEFLVG 619
Score = 206 bits (524), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 151/526 (28%), Positives = 251/526 (47%), Gaps = 55/526 (10%)
Query: 1 MKQLLQIQAHLITSGLFFNNSFWTINLLKHSA--DFGSPDYTVLVFKCINNPGTFCVNAV 58
++ L QI + +I +GL N F L++ A G Y + +FK I NP N +
Sbjct: 41 LQTLKQIHSQIIKTGLH-NTHFALSKLIEFCAVSPHGDLSYALSLFKTIRNPNHVIWNHM 99
Query: 59 IKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGV 118
I+ S+S P + +Y+ MI +G PN YTF S+F SC K G H LK G+
Sbjct: 100 IRGLSSSESPFLALEYYVHMISSGTEPNEYTFPSIFKSCTKIRGAHEGKQVHAHVLKLGL 159
Query: 119 DFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDI 178
+ V SLINMY G + AR +F + S RD +S+ ++++G+ G + A ELFD
Sbjct: 160 EHNAFVHTSLINMYAQNGELVNARLVFDKSSMRDAVSFTALITGYASKGFLDEARELFDE 219
Query: 179 MPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRS-ARFNE 237
+P R+VVSWN MISGY++SG ++ F EM ++ N TM SVL+AC +S +
Sbjct: 220 IPVRDVVSWNAMISGYAQSGRVEEAMAFFEEMRRAKVTPNVSTMLSVLSACAQSGSSLQL 279
Query: 238 GRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCI 297
G V + L NI L LID+Y KC +E A +F+ + D+N+V WN MI G+
Sbjct: 280 GNWVRSWIEDRGLGSNIRLVNGLIDMYVKCGDLEEASNLFEKIQDKNVVSWNVMIGGYTH 339
Query: 298 HGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGR------------ 345
+E + LF ++ +I P+++TF+ ++ AC L G+
Sbjct: 340 MSCYKEALGLFRRMMQ-----SNIDPNDVTFLSILPACANLGALDLGKWVHAYVDKNMKS 394
Query: 346 -----KYFRQMIDFYKI---------------KPNFAHYWCMANLYAGAELTEEAEEILR 385
+ +ID Y + A + M + +A T+ A +
Sbjct: 395 MKNTVALWTSLIDMYAKCGDLAVAKRIFDCMNTKSLATWNAMISGFAMHGHTDTALGLFS 454
Query: 386 KMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVD---MDPQDFSRYQFLLNVY 442
+M ++ + I +V +L+ C+ G +++ R S + + P+ Y +++++
Sbjct: 455 RMT--SEGFVPDDITFVGVLTACKHAGLLSLGRRYFSSMIQDYKVSPK-LPHYGCMIDLF 511
Query: 443 AVAGQWEDVARVRELMKKRRMGR-----MPGCRL---VDLKEVVEK 480
AG +++ + + M+ + G + CR+ ++L E V K
Sbjct: 512 GRAGLFDEAETLVKNMEMKPDGAIWCSLLGACRIHRRIELAESVAK 557
Score = 101 bits (252), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 94/378 (24%), Positives = 169/378 (44%), Gaps = 56/378 (14%)
Query: 167 GDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVL 226
GD+S A LF + N V WN MI G S S +P +L+ + M+ SG N+ T S+
Sbjct: 76 GDLSYALSLFKTIRNPNHVIWNHMIRGLSSSESPFLALEYYVHMISSGTEPNEYTFPSIF 135
Query: 227 TACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFD--SMAD-- 282
+C + +EG+ VH + ++ L+ N + T+LI++Y++ ++ A+ VFD SM D
Sbjct: 136 KSCTKIRGAHEGKQVHAHVLKLGLEHNAFVHTSLINMYAQNGELVNARLVFDKSSMRDAV 195
Query: 283 ---------------------------RNLVCWNAMILGHCIHGKPEEGIKLFTALVNGT 315
R++V WNAMI G+ G+ EE + F +
Sbjct: 196 SFTALITGYASKGFLDEARELFDEIPVRDVVSWNAMISGYAQSGRVEEAMAFFEEMRRAK 255
Query: 316 VAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAE 375
V +P+ T + V+ AC ++ + + R I+ + N + ++Y
Sbjct: 256 V-----TPNVSTMLSVLSACAQSGSSLQLGNWVRSWIEDRGLGSNIRLVNGLIDMYVKCG 310
Query: 376 LTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRY 435
EEA + K+ +D + +S+ ++M + ++ A+ + R+ +S ++DP D +
Sbjct: 311 DLEEASNLFEKI-QDKNVVSW-NVMIGGYTHMSCYKEALGLFRRMMQS--NIDPNDVTFL 366
Query: 436 QFL---LNVYAV-AGQWEDVARVRELMKKRRMGRMPGCRLVDLKEVVEKLKVGHFWRGGM 491
L N+ A+ G+W A V + MK + L+D+ L V
Sbjct: 367 SILPACANLGALDLGKWVH-AYVDKNMKSMKNTVALWTSLIDMYAKCGDLAVA------- 418
Query: 492 KEEVNKMMECRQSRSLAT 509
++ +C ++SLAT
Sbjct: 419 ----KRIFDCMNTKSLAT 432
>gi|359493517|ref|XP_002264078.2| PREDICTED: pentatricopeptide repeat-containing protein
At1g33350-like [Vitis vinifera]
Length = 573
Score = 272 bits (695), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 153/491 (31%), Positives = 257/491 (52%), Gaps = 19/491 (3%)
Query: 1 MKQLLQIQAHLITSGLFFNNSFWTINLLKH-SADFGSPDYTVLVFKCINNPGTFCVNAVI 59
+ L Q+QA LIT G F+ LL+ + + Y +F + +P + A+I
Sbjct: 68 LNHLKQLQAFLITLG-HAQTHFYAFKLLRFCTLALSNLSYARFIFDHVESPNVYLYTAMI 126
Query: 60 KAYSNSCVPDQGVVFYLQMIKNGF-MPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGV 118
AY++ ++ Y M++ PN + + + SC + M H L++G
Sbjct: 127 TAYASHSDHTSALLLYRNMVRRRRPWPNHFIYPHVLKSCTQVVGPGSARMVHCQVLRSGF 186
Query: 119 DFELPVMNSLINMYGCFGA-MDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFD 177
+ V +L++ Y F + ++ AR +F +M+ R+++SW +++SG+ R G + A LF+
Sbjct: 187 EQYPVVQTALLDAYLRFWSDVESARLLFDEMTERNVVSWTAMISGYTRLGQIGNAVLLFE 246
Query: 178 IMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMK-------SGFRGNDKTMASVLTACG 230
MPER+V SWN +I+GY+++G +L LFR M+ G R N T L+ACG
Sbjct: 247 EMPERDVPSWNALIAGYTQNGLFMEALSLFRRMIAVEAGAWGQGNRPNQVTAVCSLSACG 306
Query: 231 RSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNA 290
+ G+ +HGY R L + + AL+D+Y KC ++ A+RVFD +R+L WN+
Sbjct: 307 HTGMLRLGKWIHGYVYRNGLGLDSFVSNALVDMYGKCGCLKEARRVFDRTLERSLTSWNS 366
Query: 291 MILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQ 350
MI +HG+ + I +F ++ G + PDE+TFIG++ AC L+ +G YF
Sbjct: 367 MINCLALHGQSQNAISVFEEMM---TCGSGVKPDEVTFIGLLNACTHGGLVEKGWLYFEL 423
Query: 351 MIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRF 410
M Y I+P HY C+ +L A EEA E++R M + D ++W SLL+ C+
Sbjct: 424 MTQNYGIEPQIEHYGCLVDLLGRAGQFEEAMEVVRGMRIEPD-----EVIWGSLLNGCKI 478
Query: 411 QGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCR 470
G + E K +DMDP + L N+Y G+W++V +VR+++K++ + PGC
Sbjct: 479 HGHTDLAEFSIKKLIDMDPNNGGYGIMLANIYGELGKWDEVRKVRKVLKEQNAHKTPGCS 538
Query: 471 LVDLKEVVEKL 481
+++ V +
Sbjct: 539 WIEIDNQVHQF 549
>gi|449476227|ref|XP_004154678.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At2g22410, mitochondrial-like [Cucumis sativus]
Length = 681
Score = 272 bits (695), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 144/457 (31%), Positives = 245/457 (53%), Gaps = 16/457 (3%)
Query: 56 NAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALK 115
N++I Y + D+ Y +M + MP+ T + + + A+ + G H +
Sbjct: 225 NSIINGYVRCGLADEAFDLYYKMGELNVMPDEVTMIGVVSASAQLENLALGRKLHQSIEE 284
Query: 116 NGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHEL 175
G++ +P+ N+L++MY ++ A+ +F M+ + ++SW ++V G+ + G + +A L
Sbjct: 285 MGLNLTVPLANALMDMYIKCKNIEAAKILFENMTKKTVVSWTTMVIGYAKFGLLESAVRL 344
Query: 176 FDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARF 235
F+ MPE++VV WN +I G+ ++ +L LF EM S + T+ + L+AC +
Sbjct: 345 FNEMPEKDVVLWNALIGGFVQAKRSKEALALFHEMQASSVAPDKITVVNCLSACSQLGAL 404
Query: 236 NEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGH 295
+ G +H Y + +L N+ L TAL+D+Y+KC ++ A +VF+ M RN + W A+I G
Sbjct: 405 DVGIWMHHYVDKHNLTMNVALGTALVDMYAKCGNIKKAIQVFEEMPGRNSLTWTAIICGL 464
Query: 296 CIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFY 355
+HG+P I F+ +++ + PDEITFIGV+ AC L+ +GR YF QM Y
Sbjct: 465 ALHGQPHAAISYFSEMIS-----IGLVPDEITFIGVLSACCHGGLVDQGRDYFYQMTSKY 519
Query: 356 KIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVA 415
I P HY C+ +L A EEAEE++R MP + D +++W +L R G V
Sbjct: 520 GISPKLKHYSCLVDLLGRAGFLEEAEELIRSMPFEPD-----AVVWGALFFGSRIHGNVH 574
Query: 416 MVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLK 475
M ER A +++DP D Y L N+Y A WE +VR++M++R + + PGC +++
Sbjct: 575 MGERAASKLLELDPHDGGIYVLLANMYGDANMWEQARKVRKMMEERGVEKTPGCSSIEMN 634
Query: 476 EVVEKLKVGHFWRGGMKEEVNKMMEC--RQSRSLATV 510
+V + R + K+ EC R +R + +
Sbjct: 635 GLVYDFII----RDKSHPQSEKIYECLTRLTRQIEVI 667
Score = 140 bits (353), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 109/434 (25%), Positives = 193/434 (44%), Gaps = 68/434 (15%)
Query: 1 MKQLLQIQAHLITSGLFFNNSFWTINLLKHSA--DFGSPDYTVLVFKCINNPGTFCVNAV 58
M ++ +I A +I++GL ++ F L+ A ++ + DY + N F N
Sbjct: 67 MAKMKEIHAQMISTGLI-SDGFALSRLVAFCAISEWRNLDYCDKILNNAANLNXFSWNMA 125
Query: 59 IKAYSNSCVPDQGVVFYLQMIKNG-FMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNG 117
I+ Y S P V+ Y M++ G +P++YT+ LF CA G ++ G
Sbjct: 126 IRGYVESENPINAVLLYRNMLRKGSAIPDNYTYPLLFKVCAGFSLSWTANEILGHVIQLG 185
Query: 118 VDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFD 177
D +L V N++I++ G + AR +F + RDL+SWNSI++G+VR G A +L+
Sbjct: 186 FDSDLFVHNAIIHVLVSCGELLAARKLFDESCVRDLVSWNSIINGYVRCGLADEAFDLYY 245
Query: 178 IMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNE 237
M E NV+ ++ TM V++A +
Sbjct: 246 KMGELNVMP-------------------------------DEVTMIGVVSASAQLENLAL 274
Query: 238 GRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCI 297
GR +H L + L AL+D+Y KC+ +E A+ +F++M + +V W M++G+
Sbjct: 275 GRKLHQSIEEMGLNLTVPLANALMDMYIKCKNIEAAKILFENMTKKTVVSWTTMVIGYAK 334
Query: 298 HG-----------KPEEGIKLFTALVNGTV---------------AGGSISPDEITFIGV 331
G PE+ + L+ AL+ G V S++PD+IT +
Sbjct: 335 FGLLESAVRLFNEMPEKDVVLWNALIGGFVQAKRSKEALALFHEMQASSVAPDKITVVNC 394
Query: 332 ICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDN 391
+ AC + L G + +D + + N A + ++YA ++A ++ +MP N
Sbjct: 395 LSACSQLGALDVG-IWMHHYVDKHNLTMNVALGTALVDMYAKCGNIKKAIQVFEEMPGRN 453
Query: 392 DNMSFESIMWVSLL 405
S+ W +++
Sbjct: 454 ------SLTWTAII 461
Score = 81.6 bits (200), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 64/301 (21%), Positives = 124/301 (41%), Gaps = 34/301 (11%)
Query: 23 WTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNG 82
WT ++ + A FG + V +F + NA+I + + + + + +M +
Sbjct: 325 WTTMVIGY-AKFGLLESAVRLFNEMPEKDVVLWNALIGGFVQAKRSKEALALFHEMQASS 383
Query: 83 FMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCAR 142
P+ T V+ +C++ G ++ G H K+ + + + +L++MY G + A
Sbjct: 384 VAPDKITVVNCLSACSQLGALDVGIWMHHYVDKHNLTMNVALGTALVDMYAKCGNIKKAI 443
Query: 143 NMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGC 202
+F +M R+ ++W +I I G + G P
Sbjct: 444 QVFEEMPGRNSLTWTAI-------------------------------ICGLALHGQPHA 472
Query: 203 SLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRS-VHGYTVRTSLKPNIILDTALI 261
++ F EM+ G ++ T VL+AC ++GR + T + + P + + L+
Sbjct: 473 AISYFSEMISIGLVPDEITFIGVLSACCHGGLVDQGRDYFYQMTSKYGISPKLKHYSCLV 532
Query: 262 DLYSKCQKVEVAQRVFDSMA-DRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGS 320
DL + +E A+ + SM + + V W A+ G IHG G + + L+ G
Sbjct: 533 DLLGRAGFLEEAEELIRSMPFEPDAVVWGALFFGSRIHGNVHMGERAASKLLELDPHDGG 592
Query: 321 I 321
I
Sbjct: 593 I 593
Score = 47.4 bits (111), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 43/202 (21%), Positives = 91/202 (45%), Gaps = 12/202 (5%)
Query: 27 LLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPN 86
L+ A G+ + VF+ + + A+I + P + ++ +MI G +P+
Sbjct: 429 LVDMYAKCGNIKKAIQVFEEMPGRNSLTWTAIICGLALHGQPHAAISYFSEMISIGLVPD 488
Query: 87 SYTFVSLFGSCAKTGCVERG-GMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMF 145
TF+ + +C G V++G + + K G+ +L + L+++ G G ++ A +
Sbjct: 489 EITFIGVLSACCHGGLVDQGRDYFYQMTSKYGISPKLKHYSCLVDLLGRAGFLEEAEELI 548
Query: 146 VQMS-PRDLISWNSI-----VSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGN 199
M D + W ++ + G+V G+ AA +L ++ P + ++++ N
Sbjct: 549 RSMPFEPDAVVWGALFFGSRIHGNVHMGE-RAASKLLELDPHDGGIY--VLLANMYGDAN 605
Query: 200 PGCSLKLFREMMKSGFRGNDKT 221
+ R+MM+ RG +KT
Sbjct: 606 MWEQARKVRKMMEE--RGVEKT 625
>gi|357498701|ref|XP_003619639.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355494654|gb|AES75857.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 1182
Score = 271 bits (694), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 167/494 (33%), Positives = 263/494 (53%), Gaps = 28/494 (5%)
Query: 1 MKQLLQIQAHLITSGLF----FNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVN 56
+ Q+ Q A+LIT+ N F LK+ A S Y +F I P F N
Sbjct: 192 INQIKQTHANLITTAQITLPVIANKF-----LKNVA-LASLTYAHKLFDQIPQPDLFIYN 245
Query: 57 AVIKAYSNS--CVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLAL 114
+IK++S S D VF + +G+ PN Y+FV FG+C CV G A+
Sbjct: 246 TMIKSHSMSPHSYLDSIAVFRSLIRDSGYFPNRYSFVFAFGACGNGMCVREGEQVFTHAV 305
Query: 115 KNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHE 174
K G+D + V+N+LI M+G +G ++ ARN+F RD SWN+++ +V SG+M A E
Sbjct: 306 KVGLDGNVFVVNALIGMFGKWGRVEDARNVFDSAVDRDFYSWNTMIGAYVGSGNMVLAKE 365
Query: 175 LFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSAR 234
LFD M ER+VVSW+ +I+GY + G +L F +M++S + N+ TM S L AC
Sbjct: 366 LFDEMHERDVVSWSTIIAGYVQVGCFMEALDFFHKMLQSEVKPNEYTMVSALAACSNLVA 425
Query: 235 FNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVF-DSMADRNLVCWNAMIL 293
++G+ +H Y R ++K N L +LID+Y+KC +++ A VF + R + WNAMI
Sbjct: 426 LDQGKWIHVYIRRDNIKMNDRLLASLIDMYAKCGEIDSASSVFHEHKVKRKVWPWNAMIG 485
Query: 294 GHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMID 353
G +HGKPEE I +F + +SP+++TFI ++ AC ++ EG+ YF M
Sbjct: 486 GFAMHGKPEEAINVFEKM-----KVEKVSPNKVTFIALLNACSHGYMVKEGKSYFELMAS 540
Query: 354 FYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGA 413
Y I P HY CM +L + + +++EE++ MP M+ + +W +LL+ CR
Sbjct: 541 DYGINPEIEHYGCMVDLLSRSGHLKDSEEMILSMP-----MAPDVAIWGALLNACRIYKD 595
Query: 414 VAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVR---ELMKKRRMGRMPGCR 470
+ R+ + ++DP L N+Y+ +G+W + VR E+ R+ ++PG
Sbjct: 596 MERGYRIGRIIKEIDPNHIGCNVLLGNIYSTSGRWNEARMVREKNEINSDRK--KIPGFS 653
Query: 471 LVDLKEVVEKLKVG 484
++L V + VG
Sbjct: 654 SIELNGVFHEFLVG 667
>gi|449442687|ref|XP_004139112.1| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
mitochondrial-like [Cucumis sativus]
Length = 681
Score = 271 bits (694), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 144/457 (31%), Positives = 245/457 (53%), Gaps = 16/457 (3%)
Query: 56 NAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALK 115
N++I Y + D+ Y +M + MP+ T + + + A+ + G H +
Sbjct: 225 NSIINGYVRCGLADEAFDLYYKMGELNVMPDEVTMIGVVSASAQLENLALGRKLHQSIEE 284
Query: 116 NGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHEL 175
G++ +P+ N+L++MY ++ A+ +F M+ + ++SW ++V G+ + G + +A L
Sbjct: 285 MGLNLTVPLANALMDMYIKCKNIEAAKILFENMTKKTVVSWTTMVIGYAKFGLLESAVRL 344
Query: 176 FDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARF 235
F+ MPE++VV WN +I G+ ++ +L LF EM S + T+ + L+AC +
Sbjct: 345 FNEMPEKDVVLWNALIGGFVQAKRSKEALALFHEMQASSVAPDKITVVNCLSACSQLGAL 404
Query: 236 NEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGH 295
+ G +H Y + +L N+ L TAL+D+Y+KC ++ A +VF+ M RN + W A+I G
Sbjct: 405 DVGIWMHHYVDKHNLTMNVALGTALVDMYAKCGNIKKAIQVFEEMPGRNSLTWTAIICGL 464
Query: 296 CIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFY 355
+HG+P I F+ +++ + PDEITFIGV+ AC L+ +GR YF QM Y
Sbjct: 465 ALHGQPHAAISYFSEMIS-----IGLVPDEITFIGVLSACCHGGLVDQGRDYFYQMTSKY 519
Query: 356 KIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVA 415
I P HY C+ +L A EEAEE++R MP + D +++W +L R G V
Sbjct: 520 GISPKLKHYSCLVDLLGRAGFLEEAEELIRSMPFEPD-----AVVWGALFFGSRIHGNVH 574
Query: 416 MVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLK 475
M ER A +++DP D Y L N+Y A WE +VR++M++R + + PGC +++
Sbjct: 575 MGERAASKLLELDPHDGGIYVLLANMYGDANMWEQARKVRKMMEERGVEKTPGCSSIEMN 634
Query: 476 EVVEKLKVGHFWRGGMKEEVNKMMEC--RQSRSLATV 510
+V + R + K+ EC R +R + +
Sbjct: 635 GLVYDFII----RDKSHPQSEKIYECLTRLTRQIEVI 667
Score = 140 bits (353), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 109/434 (25%), Positives = 193/434 (44%), Gaps = 68/434 (15%)
Query: 1 MKQLLQIQAHLITSGLFFNNSFWTINLLKHSA--DFGSPDYTVLVFKCINNPGTFCVNAV 58
M ++ +I A +I++GL ++ F L+ A ++ + DY + N F N
Sbjct: 67 MAKMKEIHAQMISTGLI-SDGFALSRLVAFCAISEWRNLDYCDKILNNAANLNVFSWNMA 125
Query: 59 IKAYSNSCVPDQGVVFYLQMIKNG-FMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNG 117
I+ Y S P V+ Y M++ G +P++YT+ LF CA G ++ G
Sbjct: 126 IRGYVESENPINAVLLYRNMLRKGSAIPDNYTYPLLFKVCAGFSLSWTANEILGHVIQLG 185
Query: 118 VDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFD 177
D +L V N++I++ G + AR +F + RDL+SWNSI++G+VR G A +L+
Sbjct: 186 FDSDLFVHNAIIHVLVSCGELLAARKLFDESCVRDLVSWNSIINGYVRCGLADEAFDLYY 245
Query: 178 IMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNE 237
M E NV+ ++ TM V++A +
Sbjct: 246 KMGELNVMP-------------------------------DEVTMIGVVSASAQLENLAL 274
Query: 238 GRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCI 297
GR +H L + L AL+D+Y KC+ +E A+ +F++M + +V W M++G+
Sbjct: 275 GRKLHQSIEEMGLNLTVPLANALMDMYIKCKNIEAAKILFENMTKKTVVSWTTMVIGYAK 334
Query: 298 HG-----------KPEEGIKLFTALVNGTV---------------AGGSISPDEITFIGV 331
G PE+ + L+ AL+ G V S++PD+IT +
Sbjct: 335 FGLLESAVRLFNEMPEKDVVLWNALIGGFVQAKRSKEALALFHEMQASSVAPDKITVVNC 394
Query: 332 ICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDN 391
+ AC + L G + +D + + N A + ++YA ++A ++ +MP N
Sbjct: 395 LSACSQLGALDVG-IWMHHYVDKHNLTMNVALGTALVDMYAKCGNIKKAIQVFEEMPGRN 453
Query: 392 DNMSFESIMWVSLL 405
S+ W +++
Sbjct: 454 ------SLTWTAII 461
Score = 81.6 bits (200), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 64/301 (21%), Positives = 124/301 (41%), Gaps = 34/301 (11%)
Query: 23 WTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNG 82
WT ++ + A FG + V +F + NA+I + + + + + +M +
Sbjct: 325 WTTMVIGY-AKFGLLESAVRLFNEMPEKDVVLWNALIGGFVQAKRSKEALALFHEMQASS 383
Query: 83 FMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCAR 142
P+ T V+ +C++ G ++ G H K+ + + + +L++MY G + A
Sbjct: 384 VAPDKITVVNCLSACSQLGALDVGIWMHHYVDKHNLTMNVALGTALVDMYAKCGNIKKAI 443
Query: 143 NMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGC 202
+F +M R+ ++W +I I G + G P
Sbjct: 444 QVFEEMPGRNSLTWTAI-------------------------------ICGLALHGQPHA 472
Query: 203 SLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRS-VHGYTVRTSLKPNIILDTALI 261
++ F EM+ G ++ T VL+AC ++GR + T + + P + + L+
Sbjct: 473 AISYFSEMISIGLVPDEITFIGVLSACCHGGLVDQGRDYFYQMTSKYGISPKLKHYSCLV 532
Query: 262 DLYSKCQKVEVAQRVFDSMA-DRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGS 320
DL + +E A+ + SM + + V W A+ G IHG G + + L+ G
Sbjct: 533 DLLGRAGFLEEAEELIRSMPFEPDAVVWGALFFGSRIHGNVHMGERAASKLLELDPHDGG 592
Query: 321 I 321
I
Sbjct: 593 I 593
Score = 47.0 bits (110), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 43/202 (21%), Positives = 91/202 (45%), Gaps = 12/202 (5%)
Query: 27 LLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPN 86
L+ A G+ + VF+ + + A+I + P + ++ +MI G +P+
Sbjct: 429 LVDMYAKCGNIKKAIQVFEEMPGRNSLTWTAIICGLALHGQPHAAISYFSEMISIGLVPD 488
Query: 87 SYTFVSLFGSCAKTGCVERG-GMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMF 145
TF+ + +C G V++G + + K G+ +L + L+++ G G ++ A +
Sbjct: 489 EITFIGVLSACCHGGLVDQGRDYFYQMTSKYGISPKLKHYSCLVDLLGRAGFLEEAEELI 548
Query: 146 VQMS-PRDLISWNSI-----VSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGN 199
M D + W ++ + G+V G+ AA +L ++ P + ++++ N
Sbjct: 549 RSMPFEPDAVVWGALFFGSRIHGNVHMGE-RAASKLLELDPHDGGIY--VLLANMYGDAN 605
Query: 200 PGCSLKLFREMMKSGFRGNDKT 221
+ R+MM+ RG +KT
Sbjct: 606 MWEQARKVRKMMEE--RGVEKT 625
>gi|224065565|ref|XP_002301860.1| predicted protein [Populus trichocarpa]
gi|222843586|gb|EEE81133.1| predicted protein [Populus trichocarpa]
Length = 933
Score = 271 bits (694), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 147/482 (30%), Positives = 250/482 (51%), Gaps = 42/482 (8%)
Query: 32 ADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFV 91
+ F DY VL + + P F NA+IK + S P Q + Y+QM++ P SYTF
Sbjct: 25 STFNRMDYAVLAYTQMEIPNVFVYNAMIKGFVQSYQPVQALELYVQMLRANVSPTSYTFP 84
Query: 92 SLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPR 151
SL +C + HG +NG D + V SL++ Y G ++ + +F +M R
Sbjct: 85 SLIKACGLVSQLRFAEAVHGHVWRNGFDSHVFVQTSLVDFYSSMGRIEESVRVFDEMPER 144
Query: 152 DLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSK--------------- 196
D+ +W ++VSG VR GDMS+A LFD+MP+RN+ +WN +I GY++
Sbjct: 145 DVFAWTTMVSGLVRVGDMSSAGRLFDMMPDRNLATWNTLIDGYARLREVDVAELLFNQMP 204
Query: 197 -------SGNPGC---------SLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRS 240
+ C +L +F EM K G ++ TMA+V++AC + G+
Sbjct: 205 ARDIISWTTMINCYSQNKRFREALGVFNEMAKHGISPDEVTMATVISACAHLGALDLGKE 264
Query: 241 VHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGK 300
+H Y ++ ++ + +ALID+Y+KC ++ + +F + ++NL CWN++I G +HG
Sbjct: 265 IHYYIMQHGFNLDVYIGSALIDMYAKCGSLDRSLLMFFKLREKNLFCWNSVIEGLAVHGY 324
Query: 301 PEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPN 360
EE + +F + I P+ +TF+ V+ AC A L+ EGRK F M + I P
Sbjct: 325 AEEALAMFDKMER-----EKIKPNGVTFVSVLSACNHAGLIEEGRKRFASMTRDHSIPPG 379
Query: 361 FAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERL 420
HY CM +L + A L EEA +++R M + + +++W +LLS C+ + + +
Sbjct: 380 VEHYGCMVDLLSKAGLLEEALQLIRTMKLEPN-----AVIWGALLSGCKLHRNLEIAQVA 434
Query: 421 AKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRM-GRMPGCRLVDLKEVVE 479
A + ++P + Y L+N+ A +W + A++R MK++ + R PG ++++ V
Sbjct: 435 ANKLMVLEPGNSGYYTLLVNMNAEVNRWGEAAKIRLTMKEQGVEKRCPGSSWIEMESQVH 494
Query: 480 KL 481
+
Sbjct: 495 QF 496
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 88/395 (22%), Positives = 152/395 (38%), Gaps = 97/395 (24%)
Query: 157 NSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFR 216
N +S M A + M NV +N MI G+ +S P +L+L+ +M+++
Sbjct: 18 NQFISALSTFNRMDYAVLAYTQMEIPNVFVYNAMIKGFVQSYQPVQALELYVQMLRANVS 77
Query: 217 GNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRV 276
T S++ ACG ++ +VHG+ R ++ + T+L+D YS ++E + RV
Sbjct: 78 PTSYTFPSLIKACGLVSQLRFAEAVHGHVWRNGFDSHVFVQTSLVDFYSSMGRIEESVRV 137
Query: 277 FDSM-------------------------------ADRNLVCWNAMILGHC--------- 296
FD M DRNL WN +I G+
Sbjct: 138 FDEMPERDVFAWTTMVSGLVRVGDMSSAGRLFDMMPDRNLATWNTLIDGYARLREVDVAE 197
Query: 297 --IHGKPEEGIKLFTALVN---------------GTVAGGSISPDEITFIGVICACVRAE 339
+ P I +T ++N +A ISPDE+T VI AC
Sbjct: 198 LLFNQMPARDIISWTTMINCYSQNKRFREALGVFNEMAKHGISPDEVTMATVISACAHLG 257
Query: 340 LLTEGRK--YF---------------------------RQMIDFYKIKPNFAHYWCMANL 370
L G++ Y+ R ++ F+K++ + +C ++
Sbjct: 258 ALDLGKEIHYYIMQHGFNLDVYIGSALIDMYAKCGSLDRSLLMFFKLREK--NLFCWNSV 315
Query: 371 YAGAELTEEAEEILRKMPE-DNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMD- 428
G + AEE L + + + + + +VS+LS C G ++E K F M
Sbjct: 316 IEGLAVHGYAEEALAMFDKMEREKIKPNGVTFVSVLSACNHAG---LIEEGRKRFASMTR 372
Query: 429 ----PQDFSRYQFLLNVYAVAGQWEDVARVRELMK 459
P Y ++++ + AG E+ ++ MK
Sbjct: 373 DHSIPPGVEHYGCMVDLLSKAGLLEEALQLIRTMK 407
Score = 47.8 bits (112), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 37/142 (26%), Positives = 66/142 (46%), Gaps = 10/142 (7%)
Query: 27 LLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPN 86
L+ A GS D ++L+F + FC N+VI+ + ++ + + +M + PN
Sbjct: 284 LIDMYAKCGSLDRSLLMFFKLREKNLFCWNSVIEGLAVHGYAEEALAMFDKMEREKIKPN 343
Query: 87 SYTFVSLFGSCAKTGCVERG-----GMCHGLALKNGVDFELPVMNSLINMYGCF-GAMDC 140
TFVS+ +C G +E G M ++ GV+ M L++ G A+
Sbjct: 344 GVTFVSVLSACNHAGLIEEGRKRFASMTRDHSIPPGVE-HYGCMVDLLSKAGLLEEALQL 402
Query: 141 ARNMFVQMSPRDLISWNSIVSG 162
R M ++ P +I W +++SG
Sbjct: 403 IRTM--KLEPNAVI-WGALLSG 421
>gi|359497398|ref|XP_002270940.2| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
[Vitis vinifera]
Length = 640
Score = 271 bits (694), Expect = 5e-70, Method: Compositional matrix adjust.
Identities = 159/519 (30%), Positives = 263/519 (50%), Gaps = 46/519 (8%)
Query: 1 MKQLLQIQAHLITSGLFFNNSFWTINLLKHSADFGSPD---YTVLVFKCINNPGTFCVNA 57
+ Q++QI A +I + L NN F LL+ S + Y VF I +P TF N
Sbjct: 16 LNQIIQIHALIIKTSLDGNN-FVLAKLLRRLFACSSANDLLYARSVFDEIPSPDTFIWNT 74
Query: 58 VIKAYSNSCVPDQGVVFYLQMIKNGFMP-NSYTFVSLFGSCAKTGCVERGGMCHGLALKN 116
+I+AY NS P + + + QM +P +SY+ + +C + G H LK
Sbjct: 75 MIRAYLNSQNPQESMSLFFQMRHQECIPIDSYSLSLVIQACGRLKDPGNGQKLHTQVLKI 134
Query: 117 GVDFELPVMNSLINMYGCFGAMDCARN-------------------------------MF 145
G+ +L V +LI MY FG ++ ARN +F
Sbjct: 135 GLGSDLFVETALIEMYAKFGDIEIARNILDEMAHPDLVPYNVLLAEYVRVGEINLAHDLF 194
Query: 146 VQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLK 205
+M RDL+SWN+++ GH GD+ A +LFD ER+++SW+ MI+ Y+K+ +L+
Sbjct: 195 DRMPERDLVSWNTMIHGHASLGDVGTAKKLFDRTCERDLISWSSMIAAYAKARQSNEALR 254
Query: 206 LFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYS 265
LF EM + + TM SVL+ACG G+ +H R ++ ++ L T+L+D+Y+
Sbjct: 255 LFHEMQLANVLPDKVTMVSVLSACGDVGALGMGKMIHECIERNRIEIDLKLGTSLVDMYA 314
Query: 266 KCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDE 325
KC ++ + RVF+ M +R++ W+AMI+G HG E + F+ +++ I P++
Sbjct: 315 KCGDIDNSLRVFNGMNNRDVFAWSAMIMGLANHGFGELALDHFSKMIS-----EDIKPND 369
Query: 326 ITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILR 385
+TFIGV+ AC L+ EG YF M Y + P HY C+ ++ A +EA E+++
Sbjct: 370 VTFIGVLSACSHIGLVDEGWTYFTSMSKVYDVSPKIEHYGCVVDILGRAGRLQEAMELIK 429
Query: 386 KMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVA 445
MP + ++I+W +LL CR V + E + ++++P Y L N+Y+ A
Sbjct: 430 SMP-----FAPDAIVWRALLGACRIYKNVEIAEEATVNLLELEPHVDGNYVLLSNIYSQA 484
Query: 446 GQWEDVARVRELMKKRRMGRMPGCRLVDLKEVVEKLKVG 484
+W+ V VR +MK + ++PG +++ V + G
Sbjct: 485 KEWDKVVNVRRMMKNINIQKVPGSSSIEVDNAVHEFVAG 523
>gi|356510957|ref|XP_003524199.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g44230-like [Glycine max]
Length = 617
Score = 271 bits (694), Expect = 5e-70, Method: Compositional matrix adjust.
Identities = 156/490 (31%), Positives = 263/490 (53%), Gaps = 19/490 (3%)
Query: 39 YTVLVFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCA 98
Y L+F ++ P F A+I+AY+ Q + FY M K P S+TF +LF +CA
Sbjct: 61 YPRLLFSQLHTPNPFAWTALIRAYALRGPLSQALSFYSSMRKRRVSPISFTFSALFSACA 120
Query: 99 KTGCVERGGMCHGLALK-NGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWN 157
G H L G +L V N++I+MY G++ CAR +F +M RD+ISW
Sbjct: 121 AVRHSALGAQLHAQTLLLGGFSSDLYVNNAVIDMYVKCGSLRCARMVFDEMPERDVISWT 180
Query: 158 SIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRG 217
++ + R GDM AA +LFD +P +++V+W M++GY+++ P +L++FR + G
Sbjct: 181 GLIVAYTRIGDMRAARDLFDGLPVKDMVTWTAMVTGYAQNAMPMDALEVFRRLRDEGVEI 240
Query: 218 NDKTMASVLTAC---GRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQ 274
++ T+ V++AC G S N R + + + N+++ +ALID+YSKC VE A
Sbjct: 241 DEVTLVGVISACAQLGASKYANWIRDI-AESSGFGVGDNVLVGSALIDMYSKCGNVEEAY 299
Query: 275 RVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICA 334
VF M +RN+ +++MI+G IHG+ IKLF ++ + P+ +TF+GV+ A
Sbjct: 300 DVFKGMRERNVFSYSSMIVGFAIHGRARAAIKLFYDMLE-----TGVKPNHVTFVGVLTA 354
Query: 335 CVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNM 394
C A L+ +G++ F M Y + P Y CM +L + A E+A +++ MP ++D
Sbjct: 355 CSHAGLVDQGQQLFASMEKCYGVAPTAELYACMTDLLSRAGYLEKALQLVETMPMESDGA 414
Query: 395 SFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARV 454
+W +LL G + E +K +++P + Y L N YA AG+W+DV++V
Sbjct: 415 -----VWGALLGASHVHGNPDVAEIASKRLFELEPDNIGNYLLLSNTYASAGRWDDVSKV 469
Query: 455 RELMKKRRMGRMPGCRLVDLKE-VVEKLKVG---HFWRGGMKEEVNKMMECRQSRSLATV 510
R+L++++ + + PG V+ K ++ K G H +K+E+N ++E +
Sbjct: 470 RKLLREKNLKKNPGWSWVEAKNGMIHKFVAGDVSHPKINEIKKELNDLLERLKGIGYQPN 529
Query: 511 SKQLPWHKNE 520
LP+ N+
Sbjct: 530 LSSLPYGIND 539
>gi|334187520|ref|NP_001190262.1| pentatricopeptide repeat (PPR) family protein [Arabidopsis
thaliana]
gi|223635618|sp|P0C8Q7.1|PP369_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g08305
gi|332003897|gb|AED91280.1| pentatricopeptide repeat (PPR) family protein [Arabidopsis
thaliana]
Length = 534
Score = 271 bits (694), Expect = 5e-70, Method: Compositional matrix adjust.
Identities = 155/478 (32%), Positives = 262/478 (54%), Gaps = 15/478 (3%)
Query: 1 MKQLLQIQAHLITSGLFFNNSFWTINL-LKHSADFGSPDYTVLVFKCINNPGTFCVNAVI 59
M +L +I LIT GL F + L + G DY +++P + N VI
Sbjct: 21 MSELYKIHTLLITLGLSEEEPFVSQTLSFSALSSSGDVDYAYKFLSKLSDPPNYGWNFVI 80
Query: 60 KAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVD 119
+ +SNS P++ + Y+QM++ G +P+ T+ L S ++ + GG H +K+G++
Sbjct: 81 RGFSNSRNPEKSISVYIQMLRFGLLPDHMTYPFLMKSSSRLSNRKLGGSLHCSVVKSGLE 140
Query: 120 FELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIM 179
++L + N+LI+MYG F AR +F +M ++L++WNSI+ + +SGD+ +A +FD M
Sbjct: 141 WDLFICNTLIHMYGSFRDQASARKLFDEMPHKNLVTWNSILDAYAKSGDVVSARLVFDEM 200
Query: 180 PERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSG-FRGNDKTMASVLTACGRSARFNEG 238
ER+VV+W+ MI GY K G +L++F +MM+ G + N+ TM SV+ AC N G
Sbjct: 201 SERDVVTWSSMIDGYVKRGEYNKALEIFDQMMRMGSSKANEVTMVSVICACAHLGALNRG 260
Query: 239 RSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVF--DSMADRNLVCWNAMILGHC 296
++VH Y + L +IL T+LID+Y+KC + A VF S+ + + + WNA+I G
Sbjct: 261 KTVHRYILDVHLPLTVILQTSLIDMYAKCGSIGDAWSVFYRASVKETDALMWNAIIGGLA 320
Query: 297 IHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYK 356
HG E ++LF + I PDEITF+ ++ AC L+ E +F+ + +
Sbjct: 321 SHGFIRESLQLFHKMRE-----SKIDPDEITFLCLLAACSHGGLVKEAWHFFKSLKE-SG 374
Query: 357 IKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAM 416
+P HY CM ++ + A L ++A + + +MP + M +LL+ C G + +
Sbjct: 375 AEPKSEHYACMVDVLSRAGLVKDAHDFISEMP-----IKPTGSMLGALLNGCINHGNLEL 429
Query: 417 VERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDL 474
E + K +++ P + RY L NVYA+ Q+ +RE M+K+ + ++ G ++DL
Sbjct: 430 AETVGKKLIELQPHNDGRYVGLANVYAINKQFRAARSMREAMEKKGVKKIAGHSILDL 487
>gi|227462996|gb|ACP39950.1| pentatricopeptide repeat protein [Gossypium hirsutum]
gi|227462998|gb|ACP39951.1| pentatricopeptide repeat protein [Gossypium hirsutum]
Length = 532
Score = 271 bits (692), Expect = 7e-70, Method: Compositional matrix adjust.
Identities = 156/488 (31%), Positives = 260/488 (53%), Gaps = 19/488 (3%)
Query: 1 MKQLLQIQAHLITSGL----FFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVN 56
M Q+ Q+ +HLI S F ++ + +AD + +F + + TF N
Sbjct: 23 MSQIKQMHSHLIVSASRLDPFAAGKIISLFAVSSNADIS---HAYKLFLSLPHRTTFIWN 79
Query: 57 AVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKN 116
+I+ + + Y M++ GF+PN+YTF + +C V G H +K
Sbjct: 80 TIIRIFVEKNENATALSLYKNMLQTGFLPNNYTFSFVLRACTDNSPV--GLASHAQVIKL 137
Query: 117 GVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELF 176
G + V+N LI++Y + +++ AR +F + RD+I+W ++++G+V+SG + A ELF
Sbjct: 138 GWESYDFVLNGLIHLYANWSSVEAARKLFDVSTCRDVITWTALINGYVKSGHVEFARELF 197
Query: 177 DIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFN 236
D MPERN VSW+ MI+GY G +L+LF ++ +G R N + LTAC +
Sbjct: 198 DQMPERNEVSWSAMITGYVHMGMFREALELFNDLQLTGLRPNHAGIVGALTACSYLGSLD 257
Query: 237 EGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHC 296
GR +H Y R + + +L TAL+D+Y+KC +E+A VF+ M D++ + ++I G
Sbjct: 258 HGRWIHAYVDRNGTELDRVLGTALVDMYAKCGCIEIACSVFEKMPDKDAFAFTSLISGLA 317
Query: 297 IHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYK 356
HG+ + I+LF G + + P+E+TFI V+ AC R L+ EG + F M Y
Sbjct: 318 NHGQSADAIQLF-----GRMQSEKVIPNEVTFICVLSACSRMGLVDEGLRIFNCMSVVYG 372
Query: 357 IKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAM 416
I+P HY CM +L A L EEA+ ++R+MP + D S + +LL+ CR G V +
Sbjct: 373 IEPGVQHYGCMVDLLGRAGLLEEAKRLVREMPMEPD-----SYVLGALLNSCRVHGDVEL 427
Query: 417 VERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLKE 476
+ +S V+ + L N+YA + QW+ V +VR+ M +++ ++PGC +++
Sbjct: 428 GKETVESLVERGLDHGGVHVLLSNMYASSNQWDWVVKVRKEMGAKKVKKVPGCSSIEIDG 487
Query: 477 VVEKLKVG 484
V + G
Sbjct: 488 SVSEFIAG 495
>gi|328774755|gb|AEB39777.1| pentatricopeptide repeat protein 91 [Funaria hygrometrica]
Length = 890
Score = 271 bits (692), Expect = 8e-70, Method: Compositional matrix adjust.
Identities = 144/418 (34%), Positives = 241/418 (57%), Gaps = 15/418 (3%)
Query: 56 NAVIKAYSNSCVPDQ---GVVFYL--QMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCH 110
+A+I Y+ S D+ VF L +M + G PN TF+S+ +C+ G +E+G H
Sbjct: 350 SAMIAGYAQSGYQDKESLDEVFQLLERMRREGVFPNKVTFMSILKACSVHGALEQGRQIH 409
Query: 111 GLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMS 170
K G + + + ++ NMY G++ A +F +M +++++W S+++ +++ GD++
Sbjct: 410 AEISKVGFESDRSLQTAIFNMYAKCGSIYEAEQVFSKMENKNVVAWASLLTMYIKCGDLT 469
Query: 171 AAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACG 230
+A ++F M RNVVSWN+MI+GY++SG+ +L M GF+ + T+ S+L ACG
Sbjct: 470 SAEKVFSEMSTRNVVSWNLMIAGYAQSGDIAKVFELLSSMKVEGFQPDRVTIISILEACG 529
Query: 231 RSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNA 290
+ G+ VH V+ L+ + ++ T+LI +YSKC +V A+ VFD +++R+ V WNA
Sbjct: 530 ALSALERGKLVHAEAVKLGLESDTVVATSLIGMYSKCGEVTEARTVFDKISNRDTVAWNA 589
Query: 291 MILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQ 350
M+ G+ HG E + LF ++ V P+EITF VI AC RA L+ EGR+ FR
Sbjct: 590 MLAGYGQHGIGPEAVDLFKRMLKERV-----PPNEITFTAVISACGRAGLVQEGREIFRI 644
Query: 351 MIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRF 410
M + +++KP HY CM +L A +EAEE +++MP + D +W +LL C+
Sbjct: 645 MQEDFRMKPGKQHYGCMVDLLGRAGRLQEAEEFIQRMPCEPDIS-----VWHALLGACKS 699
Query: 411 QGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPG 468
V + E A + ++P + S Y L N+YA AG+W+D +VR++M + + + G
Sbjct: 700 HDNVQLAEWAAHHILRLEPSNASVYVTLSNIYAQAGRWDDSTKVRKVMDDKGLKKDRG 757
Score = 149 bits (375), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 106/434 (24%), Positives = 203/434 (46%), Gaps = 46/434 (10%)
Query: 26 NLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMP 85
+L+ + FG VF+ + +++I AY+ + P + + +M P
Sbjct: 118 SLINFYSKFGDVASVEQVFRRMTLRDVVTWSSMIAAYAGNNHPAKAFDTFERMKDANIEP 177
Query: 86 NSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMF 145
N TF+S+ +C +E+ H + +G++ ++ V +LI MY
Sbjct: 178 NRITFLSILKACNNYSMLEKAREIHTVVKASGMETDVAVATALITMYS------------ 225
Query: 146 VQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLK 205
+ G++S A E+F M ERNVVSW +I ++ + +
Sbjct: 226 -------------------KCGEISLACEIFQKMKERNVVSWTAIIQANAQHRKLNEAFE 266
Query: 206 LFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYS 265
L+ +M+++G N T S+L +C N GR +H + L+ ++++ ALI +Y
Sbjct: 267 LYEKMLQAGISPNAVTFVSLLNSCNTPEALNRGRRIHSHISERGLETDVVVANALITMYC 326
Query: 266 KCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHG-KPEEGIKLFTALVNGTVAGGSISPD 324
KC ++ A+ FD M+ R+++ W+AMI G+ G + +E + L+ G + P+
Sbjct: 327 KCNCIQDARETFDRMSKRDVISWSAMIAGYAQSGYQDKESLDEVFQLLERMRREG-VFPN 385
Query: 325 EITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEIL 384
++TF+ ++ AC L +GR+ + I + + + + N+YA EAE++
Sbjct: 386 KVTFMSILKACSVHGALEQGRQIHAE-ISKVGFESDRSLQTAIFNMYAKCGSIYEAEQVF 444
Query: 385 RKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAV 444
KM +N N+ + W SLL++ G + E++ F +M ++ + ++ YA
Sbjct: 445 SKM--ENKNV----VAWASLLTMYIKCGDLTSAEKV---FSEMSTRNVVSWNLMIAGYAQ 495
Query: 445 AGQWEDVARVRELM 458
+G D+A+V EL+
Sbjct: 496 SG---DIAKVFELL 506
Score = 125 bits (315), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 72/267 (26%), Positives = 125/267 (46%), Gaps = 36/267 (13%)
Query: 80 KNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMD 139
+ G + NS T+ + CAK E G M H + G+ ++ + NSLIN Y FG
Sbjct: 71 QRGLLVNSNTYGCIIEHCAKLRRFEDGKMVHKQLDELGLAIDIYLGNSLINFYSKFG--- 127
Query: 140 CARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGN 199
D+++ ++F M R+VV+W+ MI+ Y+ + +
Sbjct: 128 ----------------------------DVASVEQVFRRMTLRDVVTWSSMIAAYAGNNH 159
Query: 200 PGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTA 259
P + F M + N T S+L AC + + R +H + ++ ++ + TA
Sbjct: 160 PAKAFDTFERMKDANIEPNRITFLSILKACNNYSMLEKAREIHTVVKASGMETDVAVATA 219
Query: 260 LIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGG 319
LI +YSKC ++ +A +F M +RN+V W A+I + H K E +L+ ++
Sbjct: 220 LITMYSKCGEISLACEIFQKMKERNVVSWTAIIQANAQHRKLNEAFELYEKMLQ-----A 274
Query: 320 SISPDEITFIGVICACVRAELLTEGRK 346
ISP+ +TF+ ++ +C E L GR+
Sbjct: 275 GISPNAVTFVSLLNSCNTPEALNRGRR 301
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 49/196 (25%), Positives = 91/196 (46%), Gaps = 6/196 (3%)
Query: 196 KSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNII 255
K+G +++L + + G N T ++ C + RF +G+ VH L +I
Sbjct: 55 KAGRLKEAIQLLGIIKQRGLLVNSNTYGCIIEHCAKLRRFEDGKMVHKQLDELGLAIDIY 114
Query: 256 LDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGT 315
L +LI+ YSK V ++VF M R++V W++MI + + P + F + +
Sbjct: 115 LGNSLINFYSKFGDVASVEQVFRRMTLRDVVTWSSMIAAYAGNNHPAKAFDTFERMKD-- 172
Query: 316 VAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAE 375
+I P+ ITF+ ++ AC +L + R+ ++ ++ + A + +Y+
Sbjct: 173 ---ANIEPNRITFLSILKACNNYSMLEKARE-IHTVVKASGMETDVAVATALITMYSKCG 228
Query: 376 LTEEAEEILRKMPEDN 391
A EI +KM E N
Sbjct: 229 EISLACEIFQKMKERN 244
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 54/239 (22%), Positives = 100/239 (41%), Gaps = 30/239 (12%)
Query: 43 VFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGC 102
VF I+N T NA++ Y + + V + +M+K PN TF ++ +C + G
Sbjct: 575 VFDKISNRDTVAWNAMLAGYGQHGIGPEAVDLFKRMLKERVPPNEITFTAVISACGRAGL 634
Query: 103 VERGG-----MCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSP--RDLIS 155
V+ G M +K G ++++ G G + A F+Q P D+
Sbjct: 635 VQEGREIFRIMQEDFRMKPGKQH----YGCMVDLLGRAGRLQEAEE-FIQRMPCEPDISV 689
Query: 156 WNSIVSGHVRSGDMS-----AAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREM 210
W++++ G +S D AAH + + P N + + + Y+++G S K+ + M
Sbjct: 690 WHALL-GACKSHDNVQLAEWAAHHILRLEPS-NASVYVTLSNIYAQAGRWDDSTKVRKVM 747
Query: 211 MKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQK 269
G + + G S+ +GR +H + P I A +++ +K K
Sbjct: 748 DDKGLKKDR----------GESSIEIDGR-IHTFVAEDCAHPEIDSIHAELEMLTKEMK 795
>gi|297738897|emb|CBI28142.3| unnamed protein product [Vitis vinifera]
Length = 571
Score = 271 bits (692), Expect = 8e-70, Method: Compositional matrix adjust.
Identities = 164/531 (30%), Positives = 267/531 (50%), Gaps = 72/531 (13%)
Query: 1 MKQLLQIQAHLITSGLFFNNSFWTINLLK---HSADFGSPDYTVLVFKCINNPGTFCVNA 57
M+ L QIQ ++ +G F+ S T+N G+ Y +F I+ PG F N
Sbjct: 45 MQHLKQIQTQILRTG--FHQSGDTLNKFMVCCTDPSIGNLHYAERIFNYIDIPGLFIYNL 102
Query: 58 VIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNG 117
VIKA++ + + V+ + Q+ + G P+++T+ +F + G V G +G +K+G
Sbjct: 103 VIKAFTKNGSFRKAVLLFRQLREEGLSPDNFTYPFVFKAIGCLGEVREGEKVYGFVVKSG 162
Query: 118 VDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWN-------------------- 157
++F+ V NSL++MY G + R +F +M RD++SWN
Sbjct: 163 LEFDTYVCNSLMDMYAEVGRVQNLRQVFEEMPQRDVVSWNVLISGYVKCRRYEDAVDVFR 222
Query: 158 ---------------SIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGC 202
S+VSG+V G + A ELF+ P R+VV W MI+GY +
Sbjct: 223 QIFNDMPIKTVICWTSMVSGYVNCGQLDEARELFERSPVRDVVLWTAMINGYVQFNRFDD 282
Query: 203 SLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALID 262
++ LFREM + T+ ++LT + ++ TALI+
Sbjct: 283 AVALFREMQIKRVSPDRFTLVALLT-------------------------DAVVGTALIE 317
Query: 263 LYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSIS 322
+Y+KC +E + +F+ + +++ W ++I G ++GK + ++LF +V +
Sbjct: 318 MYAKCGFIEKSLEIFNGLKEKDTASWTSIICGLAMNGKTSKALELFAEMVQ-----TGVK 372
Query: 323 PDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEE 382
PD+ITFIGV+ AC L+ EGRK+FR M Y+I+P HY C+ +L A +EAEE
Sbjct: 373 PDDITFIGVLSACSHGGLVEEGRKHFRSMTAVYQIEPKLEHYGCLIDLLGRAGQLDEAEE 432
Query: 383 ILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVY 442
++ K P N+ + ++ +LLS CR G V M ER+AK V ++ D S + L N+Y
Sbjct: 433 LIEKSPNVNNEVIVP--LYGALLSACRTHGNVEMGERVAKRLVGIESGDSSVHTLLANIY 490
Query: 443 AVAGQWEDVARVRELMKKRRMGRMPGCRLVDLKEVVEKLKVGHFWRGGMKE 493
A A +WEDV +VR MK + ++PGC V++ +V + VG M+E
Sbjct: 491 ASADRWEDVTKVRRKMKDLGVKKVPGCSSVEVNGIVHEFLVGDASHPEMRE 541
>gi|356502600|ref|XP_003520106.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g20540-like [Glycine max]
Length = 518
Score = 271 bits (692), Expect = 9e-70, Method: Compositional matrix adjust.
Identities = 164/503 (32%), Positives = 268/503 (53%), Gaps = 12/503 (2%)
Query: 1 MKQLLQIQAHLITSGLFFNNSFWTINLLKHSAD--FGSPDYTVLVFKCINNPGTFCV-NA 57
+ L Q A + T+GL N+F LL + GS Y VF+ I++P T C+ N
Sbjct: 18 VNHLKQAHAQVFTTGLD-TNTFALSRLLAFCSHPYQGSLTYACRVFERIHHP-TLCICNT 75
Query: 58 VIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNG 117
+IK + + + +M+ NG P++YT + +CA G M HG + K G
Sbjct: 76 IIKTFLVNGNFYGTFHVFTKMLHNGLGPDNYTIPYVLKACAALRDCSLGKMVHGYSSKLG 135
Query: 118 VDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFD 177
+ F++ V NSL+ MY G + AR++F +M +SW+ ++SG+ + GD+ +A FD
Sbjct: 136 LVFDIFVGNSLMAMYSVCGDVIAARHVFDEMPRLSAVSWSVMISGYAKVGDVDSARLFFD 195
Query: 178 IMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNE 237
PE++ W MISGY ++ L LFR + + ++ S+L+AC +
Sbjct: 196 EAPEKDRGIWGAMISGYVQNSCFKEGLYLFRLLQLTHVVPDESIFVSILSACAHLGALDI 255
Query: 238 GRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCI 297
G +H Y R ++ +I L T+L+D+Y+KC +E+A+R+FDSM +R++VCWNAMI G +
Sbjct: 256 GIWIHRYLNRKTVSLSIRLSTSLLDMYAKCGNLELAKRLFDSMPERDIVCWNAMISGLAM 315
Query: 298 HGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKI 357
HG +K+F+ + I PD+ITFI V AC + + EG + +M Y+I
Sbjct: 316 HGDGASALKMFSEMEK-----TGIKPDDITFIAVFTACSYSGMAHEGLQLLDKMSSLYEI 370
Query: 358 KPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMV 417
+P HY C+ +L + A L EA ++R++ + N S E++ W + LS C G +
Sbjct: 371 EPKSEHYGCLVDLLSRAGLFGEAMVMIRRITSTSWNGSEETLAWRAFLSACCNHGQAQLA 430
Query: 418 ERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLKEV 477
ER AK + ++ Y L N+YA +G+ D RVR +M+ + + + PGC V++ V
Sbjct: 431 ERAAKRLLRLENHS-GVYVLLSNLYAASGKHSDARRVRNMMRNKGVDKAPGCSSVEIDGV 489
Query: 478 VEKLKVGHFWRGGMKEEVNKMME 500
V + G M EE++ ++E
Sbjct: 490 VSEFIAGEETHPQM-EEIHSVLE 511
>gi|147817753|emb|CAN66661.1| hypothetical protein VITISV_031721 [Vitis vinifera]
Length = 569
Score = 270 bits (691), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 169/517 (32%), Positives = 262/517 (50%), Gaps = 22/517 (4%)
Query: 1 MKQLLQIQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIK 60
+K+L QI +I +G F +F + LL G+ VF+ I NP T N +I+
Sbjct: 47 IKKLKQIHTQIIVNG-FSQKNFLLVKLLSFYITSGNLLNAHKVFERIENPSTTVWNQMIR 105
Query: 61 AYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDF 120
+S S P + V Y +M++ PN +T+ L G CA++ + G HG + NG
Sbjct: 106 GHSQSETPHKLVELYNRMVEAEAEPNEFTYSFLIGGCARSXLLREGEQVHGRVVANGYCT 165
Query: 121 ELPVMNSLINMYGCFGAMDC---ARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFD 177
+ V SL+N+Y G D AR +F ++ R+++SWNS+++G+VR GD+ A +FD
Sbjct: 166 NVFVRTSLVNLYAIAGGYDGVRKARRVFDEIVDRNIVSWNSLLAGYVRCGDVDGARRIFD 225
Query: 178 IMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNE 237
MPERNVVSW MI+G ++ G +L LF EM ++G + + + + L+AC
Sbjct: 226 EMPERNVVSWTTMIAGCAQIGRCKQALHLFHEMRRAGVKLDQVALVAALSACAELGDLKL 285
Query: 238 GRSVHGYT---VRTSLKPNII-LDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMIL 293
G +H Y + +P ++ L+ +LI +Y+ C ++ A +VF M R+ + W +MI
Sbjct: 286 GTWIHSYIDERLHAGNQPLLVSLNNSLIHMYASCGVIDKAYKVFIGMQQRSTISWTSMIT 345
Query: 294 GHCIHGKPEEGIKLFTALVN-GTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMI 352
G G EE + +F + GT G PD ITFIGV+CAC A + +GR +F M
Sbjct: 346 GFAKQGHAEEALGVFQWMQRLGTDEG---RPDGITFIGVLCACSHAGFVDQGRHFFECMN 402
Query: 353 DFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQG 412
+ I P HY CM +L + A +EA + MP M +W +LL CR
Sbjct: 403 KKWGIVPRIEHYGCMVDLLSRAGFLDEAHRLXESMP-----MKPNDAVWGALLGGCRIHK 457
Query: 413 AVAMVERLAKSFV-DMDPQDFSRYQFLL-NVYAVAGQWEDVARVRELMKKRRMGRMPGCR 470
+ +A+ V ++ P + Y LL NVYA A +W+DVA VR+ M + + + G
Sbjct: 458 NAELASHVAQKLVLELKPDQAAGYLVLLSNVYATAKRWQDVALVRQKMVEIGVRKPAGRS 517
Query: 471 LVDLKEVVEKLKVGHFWRGGMKEEVNKMME--CRQSR 505
V + VV G W V +M+ RQ++
Sbjct: 518 WVQINGVVHDFVAGD-WTHKHASSVYEMLSKITRQAK 553
>gi|225457355|ref|XP_002281803.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Vitis vinifera]
Length = 553
Score = 270 bits (690), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 168/517 (32%), Positives = 263/517 (50%), Gaps = 22/517 (4%)
Query: 1 MKQLLQIQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIK 60
+K+L QI +I +G F +F + LL G+ VF+ I NP T N +I+
Sbjct: 31 IKKLKQIHTQIIVNG-FSQKNFLLVKLLSFYITSGNLLNAHKVFERIENPSTTVWNQMIR 89
Query: 61 AYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDF 120
+S S P + V Y +M++ PN +T+ L G CA++ + G HG + NG
Sbjct: 90 GHSQSETPHKLVELYNRMVEAEAEPNEFTYSFLIGGCARSRLLREGEQVHGRVVANGYCT 149
Query: 121 ELPVMNSLINMYGCFGAMDC---ARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFD 177
+ V SL+N+Y G D AR +F ++ R+++SWNS+++G+VR GD+ A +FD
Sbjct: 150 NVFVRTSLVNLYAIAGGYDGVRKARRVFDEIVDRNIVSWNSLLAGYVRCGDVDGARRIFD 209
Query: 178 IMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNE 237
MPERNVVSW MI+G ++ G +L LF EM ++G + + + + L+AC
Sbjct: 210 EMPERNVVSWTTMIAGCAQIGRCKQALHLFHEMRRAGVKLDQVALVAALSACAELGDLKL 269
Query: 238 GRSVHGYT---VRTSLKPNII-LDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMIL 293
G +H Y + +P ++ L+ +LI +Y+ C ++ A +VF M R+ + W +MI
Sbjct: 270 GTWIHSYIDERLHAGNQPLLVSLNNSLIHMYASCGVIDKAYKVFIGMQQRSTISWTSMIT 329
Query: 294 GHCIHGKPEEGIKLFTALVN-GTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMI 352
G G EE + +F + GT G PD ITFIGV+CAC A + +GR +F M
Sbjct: 330 GFAKQGHAEEALGVFQWMQRLGTDEG---RPDGITFIGVLCACSHAGFVDQGRHFFECMN 386
Query: 353 DFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQG 412
+ I P HY CM +L + A +EA ++ MP M +W +LL CR
Sbjct: 387 KKWGIVPRIEHYGCMVDLLSRAGFLDEAHRLIESMP-----MKPNDAVWGALLGGCRIHK 441
Query: 413 AVAMVERLAKSF-VDMDPQDFSRYQFLL-NVYAVAGQWEDVARVRELMKKRRMGRMPGCR 470
+ +A+ +++ P + Y LL NVYA A +W+DVA VR+ M + + + G
Sbjct: 442 NAELASHVAQKLALELKPDQAAGYLVLLSNVYATAKRWQDVALVRQKMVEIGVRKPAGRS 501
Query: 471 LVDLKEVVEKLKVGHFWRGGMKEEVNKMME--CRQSR 505
V + VV G W V +M+ RQ++
Sbjct: 502 WVQINGVVHDFVAGD-WTHKHASSVYEMLSKITRQAK 537
>gi|147854977|emb|CAN80267.1| hypothetical protein VITISV_027683 [Vitis vinifera]
Length = 539
Score = 270 bits (690), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 146/414 (35%), Positives = 234/414 (56%), Gaps = 13/414 (3%)
Query: 74 FYLQMIK-NGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMY 132
+L M++ +GF+PN YTFV +F +C V G A+K G++ L V N++I MY
Sbjct: 18 IFLSMVRVSGFLPNRYTFVFVFKACGNGLGVLEGEQIRVHAIKIGLESNLFVTNAMIRMY 77
Query: 133 GCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMIS 192
+G +D AR +F +DL SWN ++ G+V SG++ A E+FD M ER+VVSW +I+
Sbjct: 78 ANWGLVDEARRVFDWSLDQDLYSWNIMIGGYVGSGEIGRAKEMFDEMSERDVVSWTTIIA 137
Query: 193 GYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKP 252
GY + G +L LF EM+++G N+ T+AS L AC ++GR +H Y ++ +K
Sbjct: 138 GYVQVGCFKEALDLFHEMLQTGPPPNEFTLASALAACANLVALDQGRWIHVYIDKSEIKM 197
Query: 253 NIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVC--WNAMILGHCIHGKPEEGIKLFTA 310
N L +L+D+Y+KC +++ A +VF L WNAMI G+ +HGK +E I LF
Sbjct: 198 NERLLASLLDMYAKCGEIDFAAKVFHDEYGLKLKVWPWNAMIGGYAMHGKSKEAIDLFEQ 257
Query: 311 LVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANL 370
+ +SP+++TF+ ++ AC +L+ EGR YF+ M Y I+P HY CM +L
Sbjct: 258 M-----KVEKVSPNKVTFVALLNACSHGKLVEEGRGYFKSMASSYGIEPEIEHYGCMVDL 312
Query: 371 YAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQ 430
+ L +EAEE + MP M+ ++ +W +LL CR + +R+ K ++D
Sbjct: 313 LGRSGLLKEAEETVFNMP-----MAPDATIWGALLGACRIHKDIERGQRIGKIIKELDSD 367
Query: 431 DFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLKEVVEKLKVG 484
+ L N+Y+ +GQW++ VR+ ++ + PGC ++L V + VG
Sbjct: 368 HIGCHVLLANLYSASGQWDEAKAVRQKIEVSGRKKTPGCSSIELNGVFHQFLVG 421
Score = 40.0 bits (92), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 33/149 (22%), Positives = 63/149 (42%), Gaps = 5/149 (3%)
Query: 56 NAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERG-GMCHGLAL 114
NA+I Y+ + + + QM PN TFV+L +C+ VE G G +A
Sbjct: 236 NAMIGGYAMHGKSKEAIDLFEQMKVEKVSPNKVTFVALLNACSHGKLVEEGRGYFKSMAS 295
Query: 115 KNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMS-PRDLISWNSIVSGHVRSGDMSAAH 173
G++ E+ ++++ G G + A M D W +++ D+
Sbjct: 296 SYGIEPEIEHYGCMVDLLGRSGLLKEAEETVFNMPMAPDATIWGALLGACRIHKDIERGQ 355
Query: 174 ELFDIMPE--RNVVSWNIMISG-YSKSGN 199
+ I+ E + + +++++ YS SG
Sbjct: 356 RIGKIIKELDSDHIGCHVLLANLYSASGQ 384
>gi|357510067|ref|XP_003625322.1| Pentatricopeptide repeat protein [Medicago truncatula]
gi|355500337|gb|AES81540.1| Pentatricopeptide repeat protein [Medicago truncatula]
Length = 1024
Score = 270 bits (690), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 141/420 (33%), Positives = 230/420 (54%), Gaps = 11/420 (2%)
Query: 56 NAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALK 115
+I Y+ ++ + + M+ + PN T +++ +C+ G +E G H +
Sbjct: 327 TTMIDGYAAHDCSEEAMEVFELMLLSHVEPNEVTLIAVVSACSDMGNLEMGKRVHEKVEE 386
Query: 116 NGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHEL 175
+ L + N+L++MY + AR +F +M+ +D+ SW S+V+G+ + GD+ +A
Sbjct: 387 KNMRCSLSLHNALLDMYVKCDCLVDARELFDRMATKDVYSWTSMVNGYAKCGDLESARRF 446
Query: 176 FDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARF 235
FD P +N V W+ MI+GYS++ P SLKLF EMM+ G + T+ SVL+ACG+
Sbjct: 447 FDQTPRKNAVCWSAMIAGYSQNNKPKESLKLFHEMMERGVVPIEHTLVSVLSACGQLTCL 506
Query: 236 NEGRSVHGYTVRTSLKP-NIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILG 294
N G +H Y V + P ++ L+ A++D+Y+KC ++ A VF +M +RNL+ WN MI G
Sbjct: 507 NLGDWIHQYFVVGKIIPLSVTLENAIVDMYAKCGSIDAATEVFSTMPERNLISWNTMIAG 566
Query: 295 HCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDF 354
+ +G+ ++ I +F + N P+ ITF+ ++ AC L++EGR+YF M
Sbjct: 567 YAANGRAKQAINVFDQMRN-----MGFEPNNITFVSLLTACSHGGLISEGREYFDNMERK 621
Query: 355 YKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAV 414
Y IKP HY CM +L L EEA +++ MP M W +LL+ CR G V
Sbjct: 622 YGIKPERGHYACMVDLLGRTGLLEEAYKLIANMP-----MQPCEAAWGALLNACRMHGNV 676
Query: 415 AMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDL 474
+ A + + +DP+D Y L N A +W DV RVR LMK + + ++PG L+++
Sbjct: 677 ELARLSAHNLLRLDPEDSGIYVLLANTCANDRKWSDVRRVRSLMKDKGVKKIPGYSLIEI 736
Score = 137 bits (346), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 122/480 (25%), Positives = 194/480 (40%), Gaps = 105/480 (21%)
Query: 1 MKQLLQIQAHLITSGL----FFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVN 56
M+QL QIQA + +G+ F + L HS D Y +F + P TF N
Sbjct: 170 MRQLKQIQARMTLTGIITHAFPVSRVIAFCALAHSGDL---HYAHTIFNRVEQPNTFMWN 226
Query: 57 AVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKN 116
+I+ Y N+ P F++ M + +S +FV +C + V G + + K
Sbjct: 227 TMIRGYQNARKPIFAFSFFVYMFQLRVEMDSRSFVFALKACQQFETVFEGESVYCVVWKM 286
Query: 117 GVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELF 176
G D EL V N LI+ Y G + AR ++F
Sbjct: 287 GFDCELLVRNGLIHFYAERGLLKNAR-------------------------------QVF 315
Query: 177 DIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFN 236
D +++VV+W MI GY+ ++++F M+ S N+ T+ +V++AC
Sbjct: 316 DESSDKDVVTWTTMIDGYAAHDCSEEAMEVFELMLLSHVEPNEVTLIAVVSACSDMGNLE 375
Query: 237 EGRSVHGYTVRTSLKPNIILDTALIDL-------------------------------YS 265
G+ VH +++ ++ L AL+D+ Y+
Sbjct: 376 MGKRVHEKVEEKNMRCSLSLHNALLDMYVKCDCLVDARELFDRMATKDVYSWTSMVNGYA 435
Query: 266 KCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDE 325
KC +E A+R FD +N VCW+AMI G+ + KP+E +KLF ++ V P E
Sbjct: 436 KCGDLESARRFFDQTPRKNAVCWSAMIAGYSQNNKPKESLKLFHEMMERGVV-----PIE 490
Query: 326 ITFIGVICACVRAELLTEGRKYFRQMIDFYKIKP-NFAHYWCMANLYAGAELTEEAEEIL 384
T + V+ AC + L G + Q KI P + + ++YA + A E+
Sbjct: 491 HTLVSVLSACGQLTCLNLG-DWIHQYFVVGKIIPLSVTLENAIVDMYAKCGSIDAATEVF 549
Query: 385 RKMPEDN---------------------------DNMSFE--SIMWVSLLSLCRFQGAVA 415
MPE N NM FE +I +VSLL+ C G ++
Sbjct: 550 STMPERNLISWNTMIAGYAANGRAKQAINVFDQMRNMGFEPNNITFVSLLTACSHGGLIS 609
Score = 47.4 bits (111), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 38/156 (24%), Positives = 67/156 (42%), Gaps = 6/156 (3%)
Query: 32 ADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFV 91
A GS D VF + N +I Y+ + Q + + QM GF PN+ TFV
Sbjct: 537 AKCGSIDAATEVFSTMPERNLISWNTMIAGYAANGRAKQAINVFDQMRNMGFEPNNITFV 596
Query: 92 SLFGSCAKTGCVERG-GMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSP 150
SL +C+ G + G + K G+ E ++++ G G ++ A + M
Sbjct: 597 SLLTACSHGGLISEGREYFDNMERKYGIKPERGHYACMVDLLGRTGLLEEAYKLIANMPM 656
Query: 151 RDL-ISWNSIVSGHVRSGDMS----AAHELFDIMPE 181
+ +W ++++ G++ +AH L + PE
Sbjct: 657 QPCEAAWGALLNACRMHGNVELARLSAHNLLRLDPE 692
>gi|224141419|ref|XP_002324070.1| predicted protein [Populus trichocarpa]
gi|222867072|gb|EEF04203.1| predicted protein [Populus trichocarpa]
Length = 546
Score = 270 bits (690), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 166/505 (32%), Positives = 254/505 (50%), Gaps = 46/505 (9%)
Query: 4 LLQIQAHLITSGLFFNNSFWTINLLKHSADF---GSPDYTVLVFKCINNPGTFCVNAVIK 60
L QI A LI G FN++ + L + G+ +Y VF I P F N +++
Sbjct: 29 LKQIHATLIIKG--FNSNRAALRELIFAGAMTISGAINYAHQVFAQITEPDIFMWNTMMR 86
Query: 61 AYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDF 120
S S P + V+ Y QM G P+ +TF L C + + G HG LK G +
Sbjct: 87 GSSQSKNPSKVVLLYTQMENRGVKPDKFTFSFLLKGCTRLEWRKTGFCVHGKVLKYGFEV 146
Query: 121 ELPVMNSLINM-------------------------------YGCFGAMDCARNMFVQMS 149
V N+LI Y G + AR +F +M
Sbjct: 147 NSFVRNTLIYFHSNCGDLVIARSIFYDLPERSVVSWSALTAGYARRGELGVARQIFDEMP 206
Query: 150 PRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFRE 209
+DL+SWN +++G+V++G+M A LFD PE++VV+WN MI+GY G +L++F E
Sbjct: 207 VKDLVSWNVMITGYVKNGEMENARTLFDEAPEKDVVTWNTMIAGYVLRGEQRQALEMFEE 266
Query: 210 MMKSGFRGNDKTMASVLTACGRSARFNEGRSVH-GYTVRTSLKPNIILDTALIDLYSKCQ 268
M G ++ TM S+L+AC GR +H + T +++L AL+D+Y+KC
Sbjct: 267 MRNVGECPDEVTMLSLLSACADLGDLQVGRKLHCSISEMTRGDLSVLLGNALVDMYAKCG 326
Query: 269 KVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITF 328
+E+A +VF M ++++ WN++I G HG EE IKLF + A +I P+EITF
Sbjct: 327 SIEIALQVFKKMREKDVTTWNSVIGGLAFHGHAEESIKLFAEMQ----ALKNIKPNEITF 382
Query: 329 IGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMP 388
+GVI AC A + EGR+YF+ M + Y I+PN H+ CM +L A L EA E++ KM
Sbjct: 383 VGVIVACSHAGNVEEGRRYFKLMRERYDIEPNMIHHGCMVDLLGRAGLLSEAFELIAKME 442
Query: 389 EDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQW 448
+ + +I+W +LL CR G V + + + + + Y L N+YA AG+W
Sbjct: 443 IEPN-----AIIWRTLLGACRVHGNVELGRLANERLLKLRRDESGDYVLLSNIYASAGEW 497
Query: 449 EDVARVRELMKKRRMGRMPGCRLVD 473
+ VR+LM + + G L++
Sbjct: 498 DGAEEVRKLMDDGGVRKEAGRSLIE 522
>gi|79456853|ref|NP_191848.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75116883|sp|Q683I9.1|PP295_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g62890
gi|51968398|dbj|BAD42891.1| putative protein [Arabidopsis thaliana]
gi|332646886|gb|AEE80407.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 573
Score = 270 bits (689), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 152/442 (34%), Positives = 252/442 (57%), Gaps = 18/442 (4%)
Query: 52 TFCVNAVIKAYSNSCVPDQ---GVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGM 108
+F N +I+A ++ Q + YL+M + P+ +TF L S + G
Sbjct: 24 SFLWNIIIRAIVHNVSSPQRHSPISVYLRMRNHRVSPDFHTFPFLLPSFHNPLHLPLGQR 83
Query: 109 CHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGD 168
H L G+D + V SL+NMY G + A+ +F +DL +WNS+V+ + ++G
Sbjct: 84 THAQILLFGLDKDPFVRTSLLNMYSSCGDLRSAQRVFDDSGSKDLPAWNSVVNAYAKAGL 143
Query: 169 MSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMM-----KSGFRGNDKTMA 223
+ A +LFD MPERNV+SW+ +I+GY G +L LFREM ++ R N+ TM+
Sbjct: 144 IDDARKLFDEMPERNVISWSCLINGYVMCGKYKEALDLFREMQLPKPNEAFVRPNEFTMS 203
Query: 224 SVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSM-AD 282
+VL+ACGR +G+ VH Y + ++ +I+L TALID+Y+KC +E A+RVF+++ +
Sbjct: 204 TVLSACGRLGALEQGKWVHAYIDKYHVEIDIVLGTALIDMYAKCGSLERAKRVFNALGSK 263
Query: 283 RNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLT 342
+++ ++AMI ++G +E +LF+ + +I+P+ +TF+G++ ACV L+
Sbjct: 264 KDVKAYSAMICCLAMYGLTDECFQLFSEMTTSD----NINPNSVTFVGILGACVHRGLIN 319
Query: 343 EGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWV 402
EG+ YF+ MI+ + I P+ HY CM +LY + L +EAE + MP + D ++W
Sbjct: 320 EGKSYFKMMIEEFGITPSIQHYGCMVDLYGRSGLIKEAESFIASMPMEPD-----VLIWG 374
Query: 403 SLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRR 462
SLLS R G + E K +++DP + Y L NVYA G+W +V +R M+ +
Sbjct: 375 SLLSGSRMLGDIKTCEGALKRLIELDPMNSGAYVLLSNVYAKTGRWMEVKCIRHEMEVKG 434
Query: 463 MGRMPGCRLVDLKEVVEKLKVG 484
+ ++PGC V+++ VV + VG
Sbjct: 435 INKVPGCSYVEVEGVVHEFVVG 456
>gi|297806919|ref|XP_002871343.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297317180|gb|EFH47602.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 511
Score = 270 bits (689), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 152/470 (32%), Positives = 252/470 (53%), Gaps = 17/470 (3%)
Query: 1 MKQLLQIQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIK 60
M Q+ Q+ AH + +G+ T +LL+ + Y +F NP F N +I+
Sbjct: 1 MNQIKQLHAHCLRTGVD-----ETKDLLQRLLLIPNLVYARKLFDLHRNPCIFLYNKLIQ 55
Query: 61 AYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDF 120
+YS P + +V Y + +G PN +TF +F + A + H ++G +
Sbjct: 56 SYSVHHQPHESIVLYNLLSFDGIRPNHHTFNFIFAASASFSSARPLRLLHSQFFRSGFES 115
Query: 121 ELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMP 180
+ +LI Y GA+ CAR +F +MS RD+ WN++++G+ R GDM AA ELFD MP
Sbjct: 116 DSFCCTALITAYAKLGALCCARRVFDEMSNRDVPVWNAMITGYQRRGDMKAAMELFDSMP 175
Query: 181 ERNVVSWNIMISGYSKSGNPGCSLKLFREMMKS-GFRGNDKTMASVLTACGRSARFNEGR 239
+NV SW +ISG+S++GN +L +F M K + N T+ SVL AC GR
Sbjct: 176 NKNVTSWTTVISGFSQNGNYSEALTMFLCMEKDKSVKPNHITLVSVLPACANLGELEIGR 235
Query: 240 SVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMAD-RNLVCWNAMILGHCIH 298
+ GY NI + A +++YSKC ++VA+R+FD + + RNL+ WN+MI H
Sbjct: 236 RLEGYARENGFFDNIYVRNATLEMYSKCGMIDVAKRLFDEIGNQRNLISWNSMIGSLATH 295
Query: 299 GKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIK 358
GK +E ++L+ ++ PD +TF+G++ ACV ++ +G++ + M + +KI
Sbjct: 296 GKHDEALELYAQMLQ-----EGERPDAVTFVGLLLACVHGGMVLKGKELLKSMEEVHKIS 350
Query: 359 PNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVE 418
P HY CM +L +EA ++++ MP M ++++W +LL C F G V + E
Sbjct: 351 PKLEHYGCMIDLLGRVGKLQEACDLIKTMP-----MKPDAVVWGTLLGACSFHGNVEIAE 405
Query: 419 RLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPG 468
+++ + ++P + + N+YA +W+ V R+R+LMKK M + G
Sbjct: 406 IASEALMKLEPTNPGNCVIMSNIYAANEKWDGVLRMRKLMKKETMTKAAG 455
>gi|359484390|ref|XP_002281719.2| PREDICTED: pentatricopeptide repeat-containing protein
At1g31430-like [Vitis vinifera]
Length = 662
Score = 270 bits (689), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 155/489 (31%), Positives = 257/489 (52%), Gaps = 10/489 (2%)
Query: 6 QIQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSNS 65
++ ++ SGL F+ ++ +L+ A+ G VF+ + N +I Y
Sbjct: 153 KVYGFVVKSGLEFD-TYVCNSLMDMYAEVGRVQNLRQVFEEMPQRDVVSWNVLISGYVKC 211
Query: 66 CVPDQGV-VFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPV 124
+ V VF ++ PN T VS +C +E G H ++ + F + +
Sbjct: 212 RRYEDAVDVFRRMQQQSSLRPNEATVVSTLSACIALKMLELGKEIHRY-VREQLGFTIKI 270
Query: 125 MNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNV 184
N+L++MY G + AR +F M + +I W S+VSG+V G + A ELF+ P R+V
Sbjct: 271 GNALVDMYCKCGHLSIAREIFNDMPIKTVICWTSMVSGYVNCGQLDEARELFERSPVRDV 330
Query: 185 VSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGY 244
V W MI+GY + ++ LFREM + T+ ++LT C + +G+ +HGY
Sbjct: 331 VLWTAMINGYVQFNRFDDAVALFREMQIKRVSPDRFTLVALLTGCAQLGTLEQGKWIHGY 390
Query: 245 TVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEG 304
+ + ++ TALI++Y+KC +E + +F+ + +++ W ++I G ++GK +
Sbjct: 391 IDENKIMIDAVVGTALIEMYAKCGFIEKSLEIFNGLKEKDTASWTSIICGLAMNGKTSKA 450
Query: 305 IKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHY 364
++LF +V + PD+ITFIGV+ AC L+ EGRK+FR M Y+I+P HY
Sbjct: 451 LELFAEMVQ-----TGVKPDDITFIGVLSACSHGGLVEEGRKHFRSMTAVYQIEPKLEHY 505
Query: 365 WCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSF 424
C+ +L A +EAEE++ K P N+ + ++ +LLS CR G V M ER+AK
Sbjct: 506 GCLIDLLGRAGQLDEAEELIEKSPNVNNEVIVP--LYGALLSACRTHGNVEMGERVAKRL 563
Query: 425 VDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLKEVVEKLKVG 484
V ++ D S + L N+YA A +WEDV +VR MK + ++PGC V++ +V + VG
Sbjct: 564 VGIESGDSSVHTLLANIYASADRWEDVTKVRRKMKDLGVKKVPGCSSVEVNGIVHEFLVG 623
Query: 485 HFWRGGMKE 493
M+E
Sbjct: 624 DASHPEMRE 632
Score = 163 bits (412), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 115/429 (26%), Positives = 198/429 (46%), Gaps = 64/429 (14%)
Query: 1 MKQLLQIQAHLITSGLFFNNSFWTINLLK---HSADFGSPDYTVLVFKCINNPGTFCVNA 57
M+ L QIQ ++ +G F+ S T+N G+ Y +F I+ PG F N
Sbjct: 45 MQHLKQIQTQILRTG--FHQSGDTLNKFMVCCTDPSIGNLHYAERIFNYIDIPGLFIYNL 102
Query: 58 VIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNG 117
VIKA++ + + V+ + Q+ + G P+++T+ +F + G V G +G +K+G
Sbjct: 103 VIKAFTKNGSFRKAVLLFRQLREEGLSPDNFTYPFVFKAIGCLGEVREGEKVYGFVVKSG 162
Query: 118 VDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFD 177
++F+ V NSL++MY G + R +F +M RD++SWN ++SG+V+ A ++F
Sbjct: 163 LEFDTYVCNSLMDMYAEVGRVQNLRQVFEEMPQRDVVSWNVLISGYVKCRRYEDAVDVFR 222
Query: 178 IMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNE 237
M + +S R N+ T+ S L+AC
Sbjct: 223 RMQQ------------------------------QSSLRPNEATVVSTLSACIALKMLEL 252
Query: 238 GRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCI 297
G+ +H Y VR L I + AL+D+Y KC + +A+ +F+ M + ++CW +M+ G+
Sbjct: 253 GKEIHRY-VREQLGFTIKIGNALVDMYCKCGHLSIAREIFNDMPIKTVICWTSMVSGYVN 311
Query: 298 HGKPEEGIKLF-----------TALVNGTVAGG---------------SISPDEITFIGV 331
G+ +E +LF TA++NG V +SPD T + +
Sbjct: 312 CGQLDEARELFERSPVRDVVLWTAMINGYVQFNRFDDAVALFREMQIKRVSPDRFTLVAL 371
Query: 332 ICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDN 391
+ C + L +G K+ ID KI + + +YA E++ EI + E
Sbjct: 372 LTGCAQLGTLEQG-KWIHGYIDENKIMIDAVVGTALIEMYAKCGFIEKSLEIFNGLKE-K 429
Query: 392 DNMSFESIM 400
D S+ SI+
Sbjct: 430 DTASWTSII 438
Score = 95.1 bits (235), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 73/301 (24%), Positives = 147/301 (48%), Gaps = 26/301 (8%)
Query: 167 GDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVL 226
G++ A +F+ + + +N++I ++K+G+ ++ LFR++ + G ++ T V
Sbjct: 80 GNLHYAERIFNYIDIPGLFIYNLVIKAFTKNGSFRKAVLLFRQLREEGLSPDNFTYPFVF 139
Query: 227 TACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLV 286
A G EG V+G+ V++ L+ + + +L+D+Y++ +V+ ++VF+ M R++V
Sbjct: 140 KAIGCLGEVREGEKVYGFVVKSGLEFDTYVCNSLMDMYAEVGRVQNLRQVFEEMPQRDVV 199
Query: 287 CWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGR- 345
WN +I G+ + E+ + +F + + S+ P+E T + + AC+ ++L G+
Sbjct: 200 SWNVLISGYVKCRRYEDAVDVFRRMQQQS----SLRPNEATVVSTLSACIALKMLELGKE 255
Query: 346 --KYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVS 403
+Y R+ + F IK A + ++Y A EI MP I W S
Sbjct: 256 IHRYVREQLGF-TIKIGNA----LVDMYCKCGHLSIAREIFNDMPIKT------VICWTS 304
Query: 404 LLSLCRFQGAV--AMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWED-VARVRELMKK 460
++S G V ++ + F +D + ++N Y +++D VA RE+ K
Sbjct: 305 MVS-----GYVNCGQLDEARELFERSPVRDVVLWTAMINGYVQFNRFDDAVALFREMQIK 359
Query: 461 R 461
R
Sbjct: 360 R 360
>gi|224129622|ref|XP_002328762.1| predicted protein [Populus trichocarpa]
gi|222839060|gb|EEE77411.1| predicted protein [Populus trichocarpa]
Length = 632
Score = 269 bits (688), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 162/514 (31%), Positives = 270/514 (52%), Gaps = 23/514 (4%)
Query: 1 MKQLLQIQAHLITSGLFFNNSFWT--INLLKHSADFGSPDYTVLVFKCINNPGTFCVNAV 58
M QL Q + +I GL +N IN ++ + Y + +F I P F N +
Sbjct: 35 MSQLRQYHSQIIRLGLSSHNHLIPPLINFCARASTSDALTYALKLFDSIPQPDAFLYNTI 94
Query: 59 IKAYSNS-CVPDQGVVF-YLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKN 116
IK + +S +P ++ Y M++N +PN++TF SL +C K ++ G H K
Sbjct: 95 IKGFLHSQLLPTNSILLLYSHMLQNSVLPNNFTFPSLLIACRK---IQHGMQIHAHLFKF 151
Query: 117 GVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELF 176
G +NSLI+MY F A++ AR +F + D +SW S++SG+ + G + A +F
Sbjct: 152 GFGAHSVCLNSLIHMYVTFQALEEARRVFHTIPHPDSVSWTSLISGYSKWGLIDEAFTIF 211
Query: 177 DIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMA-SVLTACGRSARF 235
+MP++N SWN M++ Y ++ + LF M DK +A ++L+AC
Sbjct: 212 QLMPQKNSASWNAMMAAYVQTNRFHEAFALFDRMKAENNNVLDKFVATTMLSACTGLGAL 271
Query: 236 NEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMAD--RNLVCWNAMIL 293
++G+ +H Y R ++ + L TA++D+Y KC +E A +VF S+ R + WN MI
Sbjct: 272 DQGKWIHEYIKRNGIELDSKLTTAIVDMYCKCGCLEKALQVFHSLPLPCRWISSWNCMIG 331
Query: 294 GHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMID 353
G +HG E I+LF + VA PD+ITF+ ++ AC + L+ EGR YF MI
Sbjct: 332 GLAMHGNGEAAIQLFKEMERQRVA-----PDDITFLNLLTACAHSGLVEEGRNYFSYMIR 386
Query: 354 FYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGA 413
Y I+P H+ CM +L A + EA +++ +MP +S + + +LL C+
Sbjct: 387 VYGIEPRMEHFGCMVDLLGRAGMVPEARKLIDEMP-----VSPDVTVLGTLLGACKKHRN 441
Query: 414 VAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVD 473
+ + E + + ++++P + RY L N+YA AG+WED A+VR+LM R + + PG +++
Sbjct: 442 IELGEEIGRRVIELEPNNSGRYVLLANLYANAGKWEDAAKVRKLMDDRGVKKAPGFSMIE 501
Query: 474 LKEVVEKLKVG---HFWRGGMKEEVNKMMECRQS 504
L+ V + G H + +V +M+E +S
Sbjct: 502 LQGTVHEFIAGERNHPQAKELHAKVYEMLEHLKS 535
>gi|297740165|emb|CBI30347.3| unnamed protein product [Vitis vinifera]
Length = 560
Score = 269 bits (687), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 153/485 (31%), Positives = 261/485 (53%), Gaps = 29/485 (5%)
Query: 4 LLQIQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAYS 63
L Q+ A +I GL + F L + YT VF +++P T N IK YS
Sbjct: 89 LEQVHARIIRKGLH-QDHFIISQFLTLCNSLSNFSYTTSVFNGVSSPSTVLWNTYIKGYS 147
Query: 64 NSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELP 123
+ V +++M ++ +P+ +T+ SL +C+K V+ G HG A++ GV ++
Sbjct: 148 ENYSVSLTVSLFIRMKRSDAVPDKFTYPSLIKACSKVCGVKEGVAFHGSAVRCGVGGDVF 207
Query: 124 VMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERN 183
VM SLI++YG G + CAR +F +M R+++SW ++++G+ D+ A +LFD MPE+N
Sbjct: 208 VMTSLIDLYGKCGEILCARKVFDEMGERNVVSWTAMIAGYASFSDLVEARKLFDEMPEKN 267
Query: 184 VVSWNIMISGYSKSGNPGCSLKLFREM-------------MKSGFRGNDKTMASVLTACG 230
VSWN +ISGY K G+ + K+F EM + + ++ M S+++AC
Sbjct: 268 AVSWNAIISGYVKCGDLRSARKMFDEMPHRNRDVVAWSALISGNVKPDEFIMVSLMSACS 327
Query: 231 RSARFNEGRSVHGYTVRTSL---KPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVC 287
+ + V Y ++S+ + ++I ALID+ +KC ++ A ++F+ M R+L+
Sbjct: 328 QMGSLELAKWVDDYVRKSSIDVHRAHVI--AALIDMNAKCGSMDRATKLFEEMPKRDLIS 385
Query: 288 WNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKY 347
+ +M+ G IHG + + LF+ ++N ++PD++ F ++ AC RA L+ EG Y
Sbjct: 386 YCSMMQGLSIHGCGPQAVSLFSRMLN-----EGLTPDDVAFTVILTACSRAGLVDEGCYY 440
Query: 348 FRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSL 407
F M Y I P+ HY CM +L A +EA E+L+ MP + + W +LL
Sbjct: 441 FESMKTDYSIVPSPDHYACMVDLLGRAGRLKEAYELLKSMPVEP-----HAGAWGALLGA 495
Query: 408 CRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMP 467
C+ + + E +A +++PQ+ Y L N+YA A QW DV+ +R M++R + ++P
Sbjct: 496 CKLHCDIELGEVVADQLFELEPQNAGNYVLLSNIYAAAEQWLDVSLLRNKMRERGIRKIP 555
Query: 468 GCRLV 472
GC +
Sbjct: 556 GCSWI 560
>gi|255540011|ref|XP_002511070.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223550185|gb|EEF51672.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 551
Score = 269 bits (687), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 145/473 (30%), Positives = 242/473 (51%), Gaps = 21/473 (4%)
Query: 1 MKQLLQIQAHLITSGLFFNNSFWTINLLKH-----------SADFGSPDYTVLVFKCINN 49
+ QL Q+ A T GL + + +L + F Y V F I N
Sbjct: 40 INQLYQVHAQAFTKGLLSLTACSSPQILTKILYALTTIPTPKSSFSLLHYAVSTFDNIQN 99
Query: 50 PGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMC 109
P TFC N +I+ ++ + F+LQM + P+ +++ +CA +
Sbjct: 100 PSTFCYNVIIRLHTLHSSALSALHFFLQMRRFSVPPDFHSYPFALKACAHLRVLSLAQCL 159
Query: 110 HGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDM 169
H K G +L V+NSLI++Y F ++ A +F + S RD++S+N++V G V++G+
Sbjct: 160 HSQVFKFGFVSDLYVINSLIHVYSLFDCLNYACQVFDESSDRDVVSYNALVDGFVKAGEF 219
Query: 170 SAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTAC 229
A E+FD+MP R+ VSW +I+GY++ ++ LF MM ++ + S L+AC
Sbjct: 220 VKAREIFDLMPMRDSVSWGSLIAGYAQGSYCNEAIGLFDLMMGLKLEPDNIALVSALSAC 279
Query: 230 GRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWN 289
+ +G+ +H Y + ++ + L T L+D Y+K ++ A +VF+ D++L+ WN
Sbjct: 280 AQLGELEKGKQIHDYIKKNRIQADSFLSTGLVDFYAKSGCIDTAIKVFELSPDKSLITWN 339
Query: 290 AMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFR 349
AM++G +HG + F+ ++ I PD I+F+GV+ C L+ E +K F
Sbjct: 340 AMLIGIAMHGNSHLLLNYFSRMME-----AGIKPDGISFLGVLVGCSHGGLVDEAKKLFD 394
Query: 350 QMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCR 409
+M Y ++ HY CMA+L A A L +EA E+ + +P M + +W LL CR
Sbjct: 395 EMESIYGVRRELKHYGCMADLLARAGLIKEAVELTKGLP-----MGGDIFVWSGLLGGCR 449
Query: 410 FQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRR 462
G + + E+ AK +++ P+D Y L NVYA A +WEDV ++R M R
Sbjct: 450 IHGNIEIAEQAAKQVMELKPEDGGVYSILANVYANADRWEDVVKIRRSMSSNR 502
>gi|147840590|emb|CAN72716.1| hypothetical protein VITISV_032470 [Vitis vinifera]
Length = 694
Score = 269 bits (687), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 152/498 (30%), Positives = 258/498 (51%), Gaps = 57/498 (11%)
Query: 2 KQLLQIQAHLITSGLFFNNSFWTINLLKHSA--DFGSPDYTVLVFKCINNPGTFCVNAVI 59
KQL QI A ++ +GLFF+ F L+ +A F S DY VF I +P + N +I
Sbjct: 49 KQLKQIHAQMLRTGLFFD-PFSASRLITAAALSPFPSLDYAQQVFDQIPHPNLYTWNTLI 107
Query: 60 KAYSNSCVPDQGVVFYLQMI-KNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGV 118
+AY++S P Q ++ +L+M+ ++ P+ +TF L + ++ + G HG+ +K +
Sbjct: 108 RAYASSSNPHQSLLIFLRMLHQSPDFPDKFTFPFLIKAASELEELFTGKAFHGMVIKVLL 167
Query: 119 DFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDI 178
++ ++NSLI+ Y + G++ + +F
Sbjct: 168 GSDVFILNSLIHFYA-------------------------------KCGELGLGYRVFVN 196
Query: 179 MPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEG 238
P R+VVSWN MI+ + + G P +L+LF+EM + N TM VL+AC + + F G
Sbjct: 197 XPRRDVVSWNSMITAFVQGGCPEEALELFQEMETQNVKPNGITMVGVLSACAKKSDFEFG 256
Query: 239 RSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGH--- 295
R VH Y R + ++ L A++D+Y+KC VE A+R+FD M ++++V W M++G+
Sbjct: 257 RWVHSYIERNRIXESLTLSNAMLDMYTKCGSVEDAKRLFDKMPEKDIVSWTTMLVGYAKI 316
Query: 296 ---------CIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRK 346
+HG ++ I LF+ + V P+ +TF ++CAC L+ EGR
Sbjct: 317 GEYDAAQGLAMHGHGKDAIALFSKMQEDKV-----KPNAVTFTNILCACSHVGLVEEGRT 371
Query: 347 YFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLS 406
+F QM Y + P HY CM ++ A L EEA E++ KMP M+ + +W +LL
Sbjct: 372 FFNQMELVYGVLPGVKHYACMVDILGRAGLLEEAVELIEKMP-----MAPAASVWGALLG 426
Query: 407 LCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRM 466
C V + E+ ++++P + Y L N+YA AG+W+ V+ +R+LM+ + +
Sbjct: 427 ACTIHENVVLAEQACSQLIELEPGNHGAYVLLSNIYAKAGKWDRVSGLRKLMRDVGLKKE 486
Query: 467 PGCRLVDLKEVVEKLKVG 484
PGC +++ +V + VG
Sbjct: 487 PGCSSIEVDGIVHEFLVG 504
Score = 46.2 bits (108), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 56/280 (20%), Positives = 109/280 (38%), Gaps = 43/280 (15%)
Query: 218 NDKTMAS--VLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDL--YSKCQKVEVA 273
ND+ A+ L+ + + + + +H +RT L + + LI S ++ A
Sbjct: 29 NDRYFANHPTLSLIDQCSETKQLKQIHAQMLRTGLFFDPFSASRLITAAALSPFPSLDYA 88
Query: 274 QRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVIC 333
Q+VFD + NL WN +I + P + + +F +++ + PD+ TF +I
Sbjct: 89 QQVFDQIPHPNLYTWNTLIRAYASSSNPHQSLLIFLRMLHQS----PDFPDKFTFPFLIK 144
Query: 334 ACVRAELLTEGRKY---------------FRQMIDFYK---------------IKPNFAH 363
A E L G+ + +I FY + +
Sbjct: 145 AASELEELFTGKAFHGMVIKVLLGSDVFILNSLIHFYAKCGELGLGYRVFVNXPRRDVVS 204
Query: 364 YWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKS 423
+ M + EEA E+ ++M + N+ I V +LS C + R S
Sbjct: 205 WNSMITAFVQGGCPEEALELFQEM--ETQNVKPNGITMVGVLSACAKKSDFEF-GRWVHS 261
Query: 424 FVDMD--PQDFSRYQFLLNVYAVAGQWEDVARVRELMKKR 461
+++ + + + +L++Y G ED R+ + M ++
Sbjct: 262 YIERNRIXESLTLSNAMLDMYTKCGSVEDAKRLFDKMPEK 301
>gi|356557876|ref|XP_003547236.1| PREDICTED: pentatricopeptide repeat-containing protein At5g19020,
mitochondrial-like [Glycine max]
Length = 912
Score = 269 bits (687), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 147/402 (36%), Positives = 221/402 (54%), Gaps = 12/402 (2%)
Query: 70 QGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLI 129
+ +V Y M+++G N V+L +C + + G HG+ +K G D + ++I
Sbjct: 516 EALVMYRAMLRSGLALNEILVVNLVSACGRLNAIGDGWQLHGMVVKKGFDCYNFIQTTII 575
Query: 130 NMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNI 189
+ Y G MD A F + L SWN++VSG +++ + A ++FD MPER+V SW+
Sbjct: 576 HFYAACGMMDLACLQFEVGAKDHLESWNALVSGFIKNRMVDQARKIFDDMPERDVFSWST 635
Query: 190 MISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTS 249
MISGY+++ +L+LF +M+ SG + N+ TM SV +A EGR H Y S
Sbjct: 636 MISGYAQTDQSRIALELFHKMVASGIKPNEVTMVSVFSAIATLGTLKEGRWAHEYICNES 695
Query: 250 LKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVC--WNAMILGHCIHGKPEEGIKL 307
+ N L ALID+Y+KC + A + F+ + D+ WNA+I G HG + +
Sbjct: 696 IPLNDNLRAALIDMYAKCGSINSALQFFNQIRDKTFSVSPWNAIICGLASHGHASMCLDV 755
Query: 308 FTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCM 367
F+ + +I P+ ITFIGV+ AC A L+ GR+ FR M Y ++P+ HY CM
Sbjct: 756 FSDMQR-----YNIKPNPITFIGVLSACCHAGLVEPGRRIFRIMKSAYNVEPDIKHYGCM 810
Query: 368 ANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDM 427
+L A L EEAEE++R MP M + ++W +LL+ CR G V + ER A+S +
Sbjct: 811 VDLLGRAGLLEEAEEMIRSMP-----MKADIVIWGTLLAACRTHGDVNIGERAAESLAGL 865
Query: 428 DPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGC 469
P L N+YA AG+WEDV+ VR ++ +RM RMPGC
Sbjct: 866 APSHGGGKVLLSNIYADAGRWEDVSLVRRAIQNQRMERMPGC 907
Score = 135 bits (340), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 98/402 (24%), Positives = 178/402 (44%), Gaps = 68/402 (16%)
Query: 6 QIQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSNS 65
Q+ + ++ GL +N+F +L+ A GS L+F N ++ Y+ +
Sbjct: 290 QLHSLVLKLGLH-SNTFIQNSLINMYAKRGSIKDAQLLFDACPTLNPISCNIMVCGYAKA 348
Query: 66 -----------CVPDQGVVFYLQMI--------------------KNGFMPNSYTFVSLF 94
+PD+G V Y MI +G +PN T V++
Sbjct: 349 GQLDNARKLFDIMPDKGCVSYTTMIMGLVQNECFREALEVFKDMRSDGVVPNDLTLVNVI 408
Query: 95 GSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLI 154
+C+ G + M H +A+K V+ + V +L+ Y + AR +F +M +L+
Sbjct: 409 YACSHFGEILNCRMIHAIAIKLFVEGLVLVSTNLMRAYCLCSGVGEARRLFDRMPEVNLV 468
Query: 155 SWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSG 214
SWN +++G+ ++G + A ELF+ +P+++V+SW MI GY +L ++R M++SG
Sbjct: 469 SWNVMLNGYAKAGLVDMARELFERVPDKDVISWGTMIDGYILMNRLHEALVMYRAMLRSG 528
Query: 215 FRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKC------- 267
N+ + ++++ACGR +G +HG V+ + T +I Y+ C
Sbjct: 529 LALNEILVVNLVSACGRLNAIGDGWQLHGMVVKKGFDCYNFIQTTIIHFYAACGMMDLAC 588
Query: 268 ------------------------QKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEE 303
+ V+ A+++FD M +R++ W+ MI G+ +
Sbjct: 589 LQFEVGAKDHLESWNALVSGFIKNRMVDQARKIFDDMPERDVFSWSTMISGYAQTDQSRI 648
Query: 304 GIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGR 345
++LF +V I P+E+T + V A L EGR
Sbjct: 649 ALELFHKMV-----ASGIKPNEVTMVSVFSAIATLGTLKEGR 685
Score = 114 bits (286), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 103/392 (26%), Positives = 177/392 (45%), Gaps = 53/392 (13%)
Query: 89 TFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQM 148
VS C+ + +G H L LK G+ + NSLINMY G++ A+ +F
Sbjct: 274 ALVSALKYCSSS---SQGRQLHSLVLKLGLHSNTFIQNSLINMYAKRGSIKDAQLLFDAC 330
Query: 149 SPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFR 208
+ IS N +V G+ ++G + A +LFDIMP++ VS+ MI G ++ +L++F+
Sbjct: 331 PTLNPISCNIMVCGYAKAGQLDNARKLFDIMPDKGCVSYTTMIMGLVQNECFREALEVFK 390
Query: 209 EMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQ 268
+M G ND T+ +V+ AC R +H ++ ++ +++ T L+ Y C
Sbjct: 391 DMRSDGVVPNDLTLVNVIYACSHFGEILNCRMIHAIAIKLFVEGLVLVSTNLMRAYCLCS 450
Query: 269 KVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVN------GTVAGGSI- 321
V A+R+FD M + NLV WN M+ G+ G + +LF + + GT+ G I
Sbjct: 451 GVGEARRLFDRMPEVNLVSWNVMLNGYAKAGLVDMARELFERVPDKDVISWGTMIDGYIL 510
Query: 322 -------------------SPDEITFIGVICACVRAELLTEGRKY----FRQMIDFYK-I 357
+ +EI + ++ AC R + +G + ++ D Y I
Sbjct: 511 MNRLHEALVMYRAMLRSGLALNEILVVNLVSACGRLNAIGDGWQLHGMVVKKGFDCYNFI 570
Query: 358 KPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVA-- 415
+ H+ YA + + A +D+ ES W +L+S G +
Sbjct: 571 QTTIIHF------YAACGMMDLACLQFEVGAKDH----LES--WNALVS-----GFIKNR 613
Query: 416 MVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQ 447
MV++ K F DM +D + +++ YA Q
Sbjct: 614 MVDQARKIFDDMPERDVFSWSTMISGYAQTDQ 645
>gi|225441187|ref|XP_002266244.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Vitis vinifera]
Length = 722
Score = 268 bits (686), Expect = 4e-69, Method: Compositional matrix adjust.
Identities = 151/483 (31%), Positives = 261/483 (54%), Gaps = 19/483 (3%)
Query: 6 QIQAHLITSGLFFNNSFWTINLLKH-SADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSN 64
++ +H+I G F + + N L H + FG+ + +F N +IK Y+
Sbjct: 132 EVHSHIIKHG--FESDLFVRNALIHLYSVFGNLNLARTLFDESLVRDLVSYNTMIKGYAE 189
Query: 65 SCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKN--GVDFEL 122
P+ + + +M +G +P+ +TFV+LF C+ G H KN +D +
Sbjct: 190 VNQPESALCLFGEMQNSGILPDEFTFVALFSVCSVLNEPNVGKQIHAQVYKNLRSIDSNI 249
Query: 123 PVMNSLINMYGCFGAMDCARNMFVQM-SPRDLISWNSIVSGHVRSGDMSAAHELFDIMPE 181
+ +++++MY G ++ A +F M + + +W+S+V G+ R G+++ A +LF+ M E
Sbjct: 250 LLKSAIVDMYAKCGLINIAERVFSTMGTSKSAAAWSSMVCGYARCGEINVARKLFNHMHE 309
Query: 182 RNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSV 241
R+V+SW MISGYS++G +L+LF+EM G + ++ T+ +VL+AC R F+ G+ +
Sbjct: 310 RDVISWTAMISGYSQAGQCSEALELFKEMEALGIKPDEVTLVAVLSACARLGAFDLGKRL 369
Query: 242 -HGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMAD--RNLVCWNAMILGHCIH 298
H Y N IL A++D+Y+KC ++ A +F + + +N+MI G H
Sbjct: 370 YHQYIENGVFNQNTILTAAVMDMYAKCGSIDSALEIFRRVGKNMKTGFVFNSMIAGLAQH 429
Query: 299 GKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIK 358
G E I +F L++ + PDE+TF+GV+CAC + L+ EG+K F M + Y IK
Sbjct: 430 GLGETAITVFRELIS-----TGLKPDEVTFVGVLCACGHSGLIEEGKKLFESMFNAYGIK 484
Query: 359 PNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVE 418
P HY CM +L EEA ++++KMP + + S++W +LLS CR G V + E
Sbjct: 485 PQMEHYGCMVDLLGRYGCLEEAYDLVQKMPFEAN-----SVIWRALLSACRTHGNVKIGE 539
Query: 419 RLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLKEVV 478
+ ++M+ Q +RY L N+ A A QWE+ +VR++M+ + + PG ++L +
Sbjct: 540 IAGQKLLEMEAQHGARYVLLSNILADANQWEEARQVRKVMEDHGIRKPPGWSYIELGGAI 599
Query: 479 EKL 481
+
Sbjct: 600 HRF 602
Score = 176 bits (445), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 121/422 (28%), Positives = 198/422 (46%), Gaps = 65/422 (15%)
Query: 2 KQLLQIQAHLITSGLFFNNSFWTINLLKHSADFGSPD---YTVLVFKCINNPGTFCVNAV 58
KQ LQI A I +GL + F L+ + GS D ++ L+F I+ P F N +
Sbjct: 23 KQGLQIHAQTIVNGLH-HQIFSISRLISFFSLLGSKDGLDHSRLLFSQIDCPNLFMWNTM 81
Query: 59 IKAYSNSCVPDQGVVFYLQMIKNGFMP-NSYTFVSLFGSCAKTGCVERGGMCHGLALKNG 117
I+ YS S P + +V Y+ MI G P N++TF L SCA+ +E G H +K+G
Sbjct: 82 IRGYSRSDNPREAIVLYMSMIAKGIAPPNNFTFPFLLNSCARLSSLEPGHEVHSHIIKHG 141
Query: 118 VDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFD 177
+ +L V N+LI++Y FG ++ AR +F + RDL+S+N+
Sbjct: 142 FESDLFVRNALIHLYSVFGNLNLARTLFDESLVRDLVSYNT------------------- 182
Query: 178 IMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNE 237
MI GY++ P +L LF EM SG ++ T ++ + C N
Sbjct: 183 ------------MIKGYAEVNQPESALCLFGEMQNSGILPDEFTFVALFSVCSVLNEPNV 230
Query: 238 GRSVHG--YTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSM-ADRNLVCWNAMILG 294
G+ +H Y S+ NI+L +A++D+Y+KC + +A+RVF +M ++ W++M+ G
Sbjct: 231 GKQIHAQVYKNLRSIDSNILLKSAIVDMYAKCGLINIAERVFSTMGTSKSAAAWSSMVCG 290
Query: 295 HCIHGKPEEGIKLF-----------TALVNGTVAGGS---------------ISPDEITF 328
+ G+ KLF TA+++G G I PDE+T
Sbjct: 291 YARCGEINVARKLFNHMHERDVISWTAMISGYSQAGQCSEALELFKEMEALGIKPDEVTL 350
Query: 329 IGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMP 388
+ V+ AC R G++ + Q I+ N + ++YA + A EI R++
Sbjct: 351 VAVLSACARLGAFDLGKRLYHQYIENGVFNQNTILTAAVMDMYAKCGSIDSALEIFRRVG 410
Query: 389 ED 390
++
Sbjct: 411 KN 412
>gi|356524120|ref|XP_003530680.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g40405-like [Glycine max]
Length = 616
Score = 268 bits (686), Expect = 4e-69, Method: Compositional matrix adjust.
Identities = 153/491 (31%), Positives = 250/491 (50%), Gaps = 20/491 (4%)
Query: 1 MKQLLQIQAHLITSGLF----FNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVN 56
+K++ QI A L+ G+ F+ F L ++ + DY + NNP F +N
Sbjct: 22 LKEMKQIHAQLVVKGILNNPHFHGQFVATIALHNTTNL---DYANKLLNHNNNPTLFTLN 78
Query: 57 AVIKAYSNSCVPDQGVVFYLQMI---KNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLA 113
++I+AYS S P + FY ++ N P++YTF L +CA+ G HG
Sbjct: 79 SMIRAYSKSSTPSKSFHFYANILHSNNNNLSPDNYTFTFLVRTCAQLQAHVTGLCVHGAV 138
Query: 114 LKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAH 173
+K+G + + V L+ MY G + N+F DL++ ++++ + GD+ A
Sbjct: 139 IKHGFELDPHVQTGLVFMYAELGCLSSCHNVFDGAVEPDLVTQTAMLNACAKCGDIDFAR 198
Query: 174 ELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSA 233
++FD MPER+ V+WN MI+GY++ G +L +F M G + N+ +M VL+AC
Sbjct: 199 KMFDEMPERDHVTWNAMIAGYAQCGRSREALDVFHLMQMEGVKLNEVSMVLVLSACTHLQ 258
Query: 234 RFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMIL 293
+ GR VH Y R ++ + L TAL+D+Y+KC V+ A +VF M +RN+ W++ I
Sbjct: 259 VLDHGRWVHAYVERYKVRMTVTLGTALVDMYAKCGNVDRAMQVFWGMKERNVYTWSSAIG 318
Query: 294 GHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMID 353
G ++G EE + LF + + P+ ITFI V+ C L+ EGRK+F M +
Sbjct: 319 GLAMNGFGEESLDLFNDM-----KREGVQPNGITFISVLKGCSVVGLVEEGRKHFDSMRN 373
Query: 354 FYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGA 413
Y I P HY M ++Y A +EA + MP M W +LL CR
Sbjct: 374 VYGIGPQLEHYGLMVDMYGRAGRLKEALNFINSMP-----MRPHVGAWSALLHACRMYKN 428
Query: 414 VAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVD 473
+ E + V+++ ++ Y L N+YA WE V+ +R+ MK + + ++PGC +++
Sbjct: 429 KELGEIAQRKIVELEDKNDGAYVLLSNIYADYKNWESVSSLRQTMKAKGVKKLPGCSVIE 488
Query: 474 LKEVVEKLKVG 484
+ V + VG
Sbjct: 489 VDGEVHEFIVG 499
>gi|225434622|ref|XP_002279360.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Vitis vinifera]
Length = 743
Score = 268 bits (685), Expect = 5e-69, Method: Compositional matrix adjust.
Identities = 146/475 (30%), Positives = 249/475 (52%), Gaps = 16/475 (3%)
Query: 11 LITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSNSCVPDQ 70
L+ S +F NS L+ A G VF I N++I A+ P++
Sbjct: 166 LLGSDVFILNS-----LIHFYAKCGELGLGYRVFVNIPRRDVVSWNSMITAFVQGGCPEE 220
Query: 71 GVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLIN 130
+ + +M PN T V + +CAK E G H +N + L + N++++
Sbjct: 221 ALELFQEMETQNVKPNGITMVGVLSACAKKSDFEFGRWVHSYIERNRIGESLTLSNAMLD 280
Query: 131 MYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIM 190
MY G+++ A+ +F +M +D++SW +++ G+ + G+ AA +FD MP +++ +WN +
Sbjct: 281 MYTKCGSVEDAKRLFDKMPEKDIVSWTTMLVGYAKIGEYDAAQGIFDAMPNQDIAAWNAL 340
Query: 191 ISGYSKSGNPGCSLKLFREMMKSGFRGNDK-TMASVLTACGRSARFNEGRSVHGYTVRTS 249
IS Y + G P +L+LF E+ S D+ T+ S L+AC + + G +H Y +
Sbjct: 341 ISAYEQCGKPKEALELFHELQLSKTAKPDEVTLVSTLSACAQLGAMDLGGWIHVYIKKQG 400
Query: 250 LKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFT 309
+K N L T+LID+Y KC ++ A VF S+ +++ W+AMI G +HG ++ I LF+
Sbjct: 401 MKLNCHLTTSLIDMYCKCGDLQKALMVFHSVERKDVFVWSAMIAGLAMHGHGKDAIALFS 460
Query: 310 ALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMAN 369
+ V P+ +TF ++CAC L+ EGR +F QM Y + P HY CM +
Sbjct: 461 KMQEDKV-----KPNAVTFTNILCACSHVGLVEEGRTFFNQMELVYGVLPGVKHYACMVD 515
Query: 370 LYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDP 429
+ A L EEA E++ KMP M+ + +W +LL C V + E+ ++++P
Sbjct: 516 ILGRAGLLEEAVELIEKMP-----MAPAASVWGALLGACTIHENVVLAEQACSQLIELEP 570
Query: 430 QDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLKEVVEKLKVG 484
+ Y L N+YA AG+W+ V+ +R+LM+ + + PGC +++ +V + VG
Sbjct: 571 GNHGAYVLLSNIYAKAGKWDRVSGLRKLMRDVGLKKEPGCSSIEVDGIVHEFLVG 625
Score = 166 bits (419), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 103/366 (28%), Positives = 178/366 (48%), Gaps = 62/366 (16%)
Query: 2 KQLLQIQAHLITSGLFFNNSFWTINLLKHSA--DFGSPDYTVLVFKCINNPGTFCVNAVI 59
KQL QI A ++ +GLFF+ F L+ +A F S DY VF I +P + N +I
Sbjct: 49 KQLKQIHAQMLRTGLFFD-PFSASRLITAAALSPFPSLDYAQQVFDQIPHPNLYTWNTLI 107
Query: 60 KAYSNSCVPDQGVVFYLQMI-KNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGV 118
+AY++S P Q ++ +L+M+ ++ P+ +TF L + ++ + G HG+ +K +
Sbjct: 108 RAYASSSNPHQSLLIFLRMLHQSPDFPDKFTFPFLIKAASELEELFTGKAFHGMVIKVLL 167
Query: 119 DFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDI 178
++ ++NSLI+ Y G + +FV + RD++SWNS+++ V+ G
Sbjct: 168 GSDVFILNSLIHFYAKCGELGLGYRVFVNIPRRDVVSWNSMITAFVQGG----------- 216
Query: 179 MPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEG 238
PE +L+LF+EM + N TM VL+AC + + F G
Sbjct: 217 CPEE--------------------ALELFQEMETQNVKPNGITMVGVLSACAKKSDFEFG 256
Query: 239 RSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIH 298
R VH Y R + ++ L A++D+Y+KC VE A+R+FD M ++++V W M++G+
Sbjct: 257 RWVHSYIERNRIGESLTLSNAMLDMYTKCGSVEDAKRLFDKMPEKDIVSWTTMLVGYAKI 316
Query: 299 GKPEEGIKLFTALVNGTVAG---------------------------GSISPDEITFIGV 331
G+ + +F A+ N +A + PDE+T +
Sbjct: 317 GEYDAAQGIFDAMPNQDIAAWNALISAYEQCGKPKEALELFHELQLSKTAKPDEVTLVST 376
Query: 332 ICACVR 337
+ AC +
Sbjct: 377 LSACAQ 382
Score = 114 bits (286), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 76/280 (27%), Positives = 132/280 (47%), Gaps = 16/280 (5%)
Query: 169 MSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDK-TMASVLT 227
+ A ++FD +P N+ +WN +I Y+ S NP SL +F M+ DK T ++
Sbjct: 85 LDYAQQVFDQIPHPNLYTWNTLIRAYASSSNPHQSLLIFLRMLHQSPDFPDKFTFPFLIK 144
Query: 228 ACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVC 287
A G++ HG ++ L ++ + +LI Y+KC ++ + RVF ++ R++V
Sbjct: 145 AASELEELFTGKAFHGMVIKVLLGSDVFILNSLIHFYAKCGELGLGYRVFVNIPRRDVVS 204
Query: 288 WNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKY 347
WN+MI G PEE ++LF + V P+ IT +GV+ AC + GR +
Sbjct: 205 WNSMITAFVQGGCPEEALELFQEMETQNV-----KPNGITMVGVLSACAKKSDFEFGR-W 258
Query: 348 FRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSL 407
I+ +I + M ++Y E+A+ + KMPE D +S+ + M V +
Sbjct: 259 VHSYIERNRIGESLTLSNAMLDMYTKCGSVEDAKRLFDKMPE-KDIVSW-TTMLVGYAKI 316
Query: 408 CRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQ 447
+ A + F M QD + + L++ Y G+
Sbjct: 317 GEYDAAQGI-------FDAMPNQDIAAWNALISAYEQCGK 349
Score = 46.2 bits (108), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 56/282 (19%), Positives = 110/282 (39%), Gaps = 43/282 (15%)
Query: 218 NDKTMAS--VLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDL--YSKCQKVEVA 273
ND+ A+ L+ + + + + +H +RT L + + LI S ++ A
Sbjct: 29 NDRYFANHPTLSLIDQCSETKQLKQIHAQMLRTGLFFDPFSASRLITAAALSPFPSLDYA 88
Query: 274 QRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVIC 333
Q+VFD + NL WN +I + P + + +F +++ + PD+ TF +I
Sbjct: 89 QQVFDQIPHPNLYTWNTLIRAYASSSNPHQSLLIFLRMLHQS----PDFPDKFTFPFLIK 144
Query: 334 ACVRAELLTEGRKY---------------FRQMIDFYK---------------IKPNFAH 363
A E L G+ + +I FY + +
Sbjct: 145 AASELEELFTGKAFHGMVIKVLLGSDVFILNSLIHFYAKCGELGLGYRVFVNIPRRDVVS 204
Query: 364 YWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKS 423
+ M + EEA E+ ++M + N+ I V +LS C + R S
Sbjct: 205 WNSMITAFVQGGCPEEALELFQEM--ETQNVKPNGITMVGVLSACAKKSDFEF-GRWVHS 261
Query: 424 FVDMDP--QDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRM 463
+++ + + + +L++Y G ED R+ + M ++ +
Sbjct: 262 YIERNRIGESLTLSNAMLDMYTKCGSVEDAKRLFDKMPEKDI 303
>gi|15233234|ref|NP_188214.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|218546758|sp|Q9LSB8.2|PP235_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
At3g15930
gi|332642227|gb|AEE75748.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 687
Score = 268 bits (685), Expect = 5e-69, Method: Compositional matrix adjust.
Identities = 160/504 (31%), Positives = 258/504 (51%), Gaps = 11/504 (2%)
Query: 6 QIQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSNS 65
++ H++ GL +N + L+K + G D VF F N +I Y+
Sbjct: 156 KLHCHVVKFGLG-SNLYVQNALVKMYSLCGLMDMARGVFDRRCKEDVFSWNLMISGYNRM 214
Query: 66 CVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVM 125
++ + ++M +N P S T + + +C+K + H + + L +
Sbjct: 215 KEYEESIELLVEMERNLVSPTSVTLLLVLSACSKVKDKDLCKRVHEYVSECKTEPSLRLE 274
Query: 126 NSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVV 185
N+L+N Y G MD A +F M RD+ISW SIV G+V G++ A FD MP R+ +
Sbjct: 275 NALVNAYAACGEMDIAVRIFRSMKARDVISWTSIVKGYVERGNLKLARTYFDQMPVRDRI 334
Query: 186 SWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYT 245
SW IMI GY ++G SL++FREM +G ++ TM SVLTAC G + Y
Sbjct: 335 SWTIMIDGYLRAGCFNESLEIFREMQSAGMIPDEFTMVSVLTACAHLGSLEIGEWIKTYI 394
Query: 246 VRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGI 305
+ +K ++++ ALID+Y KC E AQ+VF M R+ W AM++G +G+ +E I
Sbjct: 395 DKNKIKNDVVVGNALIDMYFKCGCSEKAQKVFHDMDQRDKFTWTAMVVGLANNGQGQEAI 454
Query: 306 KLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYW 365
K+F + + SI PD+IT++GV+ AC + ++ + RK+F +M ++I+P+ HY
Sbjct: 455 KVFFQMQD-----MSIQPDDITYLGVLSACNHSGMVDQARKFFAKMRSDHRIEPSLVHYG 509
Query: 366 CMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFV 425
CM ++ A L +EA EILRKMP M+ SI+W +LL R M E AK +
Sbjct: 510 CMVDMLGRAGLVKEAYEILRKMP-----MNPNSIVWGALLGASRLHNDEPMAELAAKKIL 564
Query: 426 DMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLKEVVEKLKVGH 485
+++P + + Y L N+YA +W+D+ VR + + + PG L+++ + G
Sbjct: 565 ELEPDNGAVYALLCNIYAGCKRWKDLREVRRKIVDVAIKKTPGFSLIEVNGFAHEFVAGD 624
Query: 486 FWRGGMKEEVNKMMECRQSRSLAT 509
+E K+ E Q + A
Sbjct: 625 KSHLQSEEIYMKLEELAQESTFAA 648
Score = 130 bits (328), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 107/421 (25%), Positives = 179/421 (42%), Gaps = 72/421 (17%)
Query: 3 QLLQIQAHLITSGLFFNNSF-------WTINLLKHSADFGSPDYTVLVFKCINNPGTFCV 55
Q Q+ + IT G+ N +F W L H + Y +F I P
Sbjct: 49 QFKQLHSQSITRGVAPNPTFQKKLFVFWCSRLGGHVS------YAYKLFVKIPEPDVVVW 102
Query: 56 NAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTG-CVERGGMCHGLAL 114
N +IK +S +GV YL M+K G P+S+TF L + G + G H +
Sbjct: 103 NNMIKGWSKVDCDGEGVRLYLNMLKEGVTPDSHTFPFLLNGLKRDGGALACGKKLHCHVV 162
Query: 115 KNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHE 174
K G+ L V N+L+ MY G MD AR +F + D+ SWN ++SG+ R + + E
Sbjct: 163 KFGLGSNLYVQNALVKMYSLCGLMDMARGVFDRRCKEDVFSWNLMISGYNRMKEYEESIE 222
Query: 175 LFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSAR 234
L M ERN+VS T+ VL+AC +
Sbjct: 223 LLVEM-ERNLVS------------------------------PTSVTLLLVLSACSKVKD 251
Query: 235 FNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILG 294
+ + VH Y +P++ L+ AL++ Y+ C ++++A R+F SM R+++ W +++ G
Sbjct: 252 KDLCKRVHEYVSECKTEPSLRLENALVNAYAACGEMDIAVRIFRSMKARDVISWTSIVKG 311
Query: 295 HCIHGKPEEGIKLF-----------TALVNGTVAGGSIS---------------PDEITF 328
+ G + F T +++G + G + PDE T
Sbjct: 312 YVERGNLKLARTYFDQMPVRDRISWTIMIDGYLRAGCFNESLEIFREMQSAGMIPDEFTM 371
Query: 329 IGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMP 388
+ V+ AC L G ++ + ID KIK + + ++Y +E+A+++ M
Sbjct: 372 VSVLTACAHLGSLEIG-EWIKTYIDKNKIKNDVVVGNALIDMYFKCGCSEKAQKVFHDMD 430
Query: 389 E 389
+
Sbjct: 431 Q 431
Score = 99.4 bits (246), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 80/296 (27%), Positives = 138/296 (46%), Gaps = 23/296 (7%)
Query: 153 LISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMK 212
+ W S + GHV S A++LF +PE +VV WN MI G+SK G ++L+ M+K
Sbjct: 73 FVFWCSRLGGHV-----SYAYKLFVKIPEPDVVVWNNMIKGWSKVDCDGEGVRLYLNMLK 127
Query: 213 SGFRGNDKTMASVLTACGRSA-RFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVE 271
G + T +L R G+ +H + V+ L N+ + AL+ +YS C ++
Sbjct: 128 EGVTPDSHTFPFLLNGLKRDGGALACGKKLHCHVVKFGLGSNLYVQNALVKMYSLCGLMD 187
Query: 272 VAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGV 331
+A+ VFD ++ WN MI G+ + EE I+L + V SP +T + V
Sbjct: 188 MARGVFDRRCKEDVFSWNLMISGYNRMKEYEESIELLVEMERNLV-----SPTSVTLLLV 242
Query: 332 ICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDN 391
+ AC + + + K + + K +P+ + N YA + A I R M
Sbjct: 243 LSACSKVK-DKDLCKRVHEYVSECKTEPSLRLENALVNAYAACGEMDIAVRIFRSMK--- 298
Query: 392 DNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDP-QDFSRYQFLLNVYAVAG 446
+ + I W S++ +G + +LA+++ D P +D + +++ Y AG
Sbjct: 299 ---ARDVISWTSIVKGYVERGNL----KLARTYFDQMPVRDRISWTIMIDGYLRAG 347
>gi|9294596|dbj|BAB02877.1| unnamed protein product [Arabidopsis thaliana]
Length = 695
Score = 268 bits (685), Expect = 5e-69, Method: Compositional matrix adjust.
Identities = 160/504 (31%), Positives = 258/504 (51%), Gaps = 11/504 (2%)
Query: 6 QIQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSNS 65
++ H++ GL +N + L+K + G D VF F N +I Y+
Sbjct: 156 KLHCHVVKFGLG-SNLYVQNALVKMYSLCGLMDMARGVFDRRCKEDVFSWNLMISGYNRM 214
Query: 66 CVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVM 125
++ + ++M +N P S T + + +C+K + H + + L +
Sbjct: 215 KEYEESIELLVEMERNLVSPTSVTLLLVLSACSKVKDKDLCKRVHEYVSECKTEPSLRLE 274
Query: 126 NSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVV 185
N+L+N Y G MD A +F M RD+ISW SIV G+V G++ A FD MP R+ +
Sbjct: 275 NALVNAYAACGEMDIAVRIFRSMKARDVISWTSIVKGYVERGNLKLARTYFDQMPVRDRI 334
Query: 186 SWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYT 245
SW IMI GY ++G SL++FREM +G ++ TM SVLTAC G + Y
Sbjct: 335 SWTIMIDGYLRAGCFNESLEIFREMQSAGMIPDEFTMVSVLTACAHLGSLEIGEWIKTYI 394
Query: 246 VRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGI 305
+ +K ++++ ALID+Y KC E AQ+VF M R+ W AM++G +G+ +E I
Sbjct: 395 DKNKIKNDVVVGNALIDMYFKCGCSEKAQKVFHDMDQRDKFTWTAMVVGLANNGQGQEAI 454
Query: 306 KLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYW 365
K+F + + SI PD+IT++GV+ AC + ++ + RK+F +M ++I+P+ HY
Sbjct: 455 KVFFQMQD-----MSIQPDDITYLGVLSACNHSGMVDQARKFFAKMRSDHRIEPSLVHYG 509
Query: 366 CMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFV 425
CM ++ A L +EA EILRKMP M+ SI+W +LL R M E AK +
Sbjct: 510 CMVDMLGRAGLVKEAYEILRKMP-----MNPNSIVWGALLGASRLHNDEPMAELAAKKIL 564
Query: 426 DMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLKEVVEKLKVGH 485
+++P + + Y L N+YA +W+D+ VR + + + PG L+++ + G
Sbjct: 565 ELEPDNGAVYALLCNIYAGCKRWKDLREVRRKIVDVAIKKTPGFSLIEVNGFAHEFVAGD 624
Query: 486 FWRGGMKEEVNKMMECRQSRSLAT 509
+E K+ E Q + A
Sbjct: 625 KSHLQSEEIYMKLEELAQESTFAA 648
Score = 130 bits (328), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 107/421 (25%), Positives = 179/421 (42%), Gaps = 72/421 (17%)
Query: 3 QLLQIQAHLITSGLFFNNSF-------WTINLLKHSADFGSPDYTVLVFKCINNPGTFCV 55
Q Q+ + IT G+ N +F W L H + Y +F I P
Sbjct: 49 QFKQLHSQSITRGVAPNPTFQKKLFVFWCSRLGGHVS------YAYKLFVKIPEPDVVVW 102
Query: 56 NAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTG-CVERGGMCHGLAL 114
N +IK +S +GV YL M+K G P+S+TF L + G + G H +
Sbjct: 103 NNMIKGWSKVDCDGEGVRLYLNMLKEGVTPDSHTFPFLLNGLKRDGGALACGKKLHCHVV 162
Query: 115 KNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHE 174
K G+ L V N+L+ MY G MD AR +F + D+ SWN ++SG+ R + + E
Sbjct: 163 KFGLGSNLYVQNALVKMYSLCGLMDMARGVFDRRCKEDVFSWNLMISGYNRMKEYEESIE 222
Query: 175 LFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSAR 234
L M ERN+VS T+ VL+AC +
Sbjct: 223 LLVEM-ERNLVS------------------------------PTSVTLLLVLSACSKVKD 251
Query: 235 FNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILG 294
+ + VH Y +P++ L+ AL++ Y+ C ++++A R+F SM R+++ W +++ G
Sbjct: 252 KDLCKRVHEYVSECKTEPSLRLENALVNAYAACGEMDIAVRIFRSMKARDVISWTSIVKG 311
Query: 295 HCIHGKPEEGIKLF-----------TALVNGTVAGGSIS---------------PDEITF 328
+ G + F T +++G + G + PDE T
Sbjct: 312 YVERGNLKLARTYFDQMPVRDRISWTIMIDGYLRAGCFNESLEIFREMQSAGMIPDEFTM 371
Query: 329 IGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMP 388
+ V+ AC L G ++ + ID KIK + + ++Y +E+A+++ M
Sbjct: 372 VSVLTACAHLGSLEIG-EWIKTYIDKNKIKNDVVVGNALIDMYFKCGCSEKAQKVFHDMD 430
Query: 389 E 389
+
Sbjct: 431 Q 431
Score = 99.4 bits (246), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 80/296 (27%), Positives = 138/296 (46%), Gaps = 23/296 (7%)
Query: 153 LISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMK 212
+ W S + GHV S A++LF +PE +VV WN MI G+SK G ++L+ M+K
Sbjct: 73 FVFWCSRLGGHV-----SYAYKLFVKIPEPDVVVWNNMIKGWSKVDCDGEGVRLYLNMLK 127
Query: 213 SGFRGNDKTMASVLTACGRSA-RFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVE 271
G + T +L R G+ +H + V+ L N+ + AL+ +YS C ++
Sbjct: 128 EGVTPDSHTFPFLLNGLKRDGGALACGKKLHCHVVKFGLGSNLYVQNALVKMYSLCGLMD 187
Query: 272 VAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGV 331
+A+ VFD ++ WN MI G+ + EE I+L + V SP +T + V
Sbjct: 188 MARGVFDRRCKEDVFSWNLMISGYNRMKEYEESIELLVEMERNLV-----SPTSVTLLLV 242
Query: 332 ICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDN 391
+ AC + + + K + + K +P+ + N YA + A I R M
Sbjct: 243 LSACSKVK-DKDLCKRVHEYVSECKTEPSLRLENALVNAYAACGEMDIAVRIFRSMK--- 298
Query: 392 DNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDP-QDFSRYQFLLNVYAVAG 446
+ + I W S++ +G + +LA+++ D P +D + +++ Y AG
Sbjct: 299 ---ARDVISWTSIVKGYVERGNL----KLARTYFDQMPVRDRISWTIMIDGYLRAG 347
>gi|242034539|ref|XP_002464664.1| hypothetical protein SORBIDRAFT_01g023020 [Sorghum bicolor]
gi|241918518|gb|EER91662.1| hypothetical protein SORBIDRAFT_01g023020 [Sorghum bicolor]
Length = 650
Score = 268 bits (685), Expect = 5e-69, Method: Compositional matrix adjust.
Identities = 140/430 (32%), Positives = 238/430 (55%), Gaps = 12/430 (2%)
Query: 56 NAVIKAYSNSCVPDQGVVFYLQMIKNG--FMPNSYTFVSLFGSCAKTGCVERGGMCHGLA 113
N +I Y S +P + + + +++++G P+ T + CA+ G +E G H
Sbjct: 191 NTLIGGYVRSGLPREALELFWRLVEDGKAVRPDEVTMIGAVSGCAQMGDLELGKRLHEFV 250
Query: 114 LKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAH 173
GV + +MN++++MY G+++ A+++F ++ + ++SW +++ GH R G M A
Sbjct: 251 DSKGVRCTVRLMNAVMDMYVKCGSLELAKSVFERIDNKTVVSWTTMIVGHARLGMMEDAR 310
Query: 174 ELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSA 233
LFD MPER+V WN +++GY ++ ++ LF EM +S N+ TM ++L+AC +
Sbjct: 311 MLFDEMPERDVFPWNALMAGYVQNKQGKEAIALFHEMQESKVDPNEITMVNLLSACSQLG 370
Query: 234 RFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMIL 293
G VH Y R L ++ L T+L+D+Y+KC ++ A +F + D+N + W AMI
Sbjct: 371 ALEMGMWVHHYIDRHQLYLSVALGTSLVDMYAKCGNIKKAICIFKEIPDKNALTWTAMIC 430
Query: 294 GHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMID 353
G HG +E I+ F +++ + PDEITFIGV+ AC A L+ EGR++F M +
Sbjct: 431 GLANHGHADEAIEYFQRMID-----LGLQPDEITFIGVLSACCHAGLVKEGRQFFSLMHE 485
Query: 354 FYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGA 413
Y ++ HY CM +L A +EAE+++ MP D D +++W +L CR G
Sbjct: 486 KYHLERKMKHYSCMIDLLGRAGHLDEAEQLVNTMPMDPD-----AVVWGALFFACRMHGN 540
Query: 414 VAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVD 473
+ + E+ A V++DP D Y L N+YA A + +VR +M+ + ++PGC ++
Sbjct: 541 ITLGEKAAMKLVELDPSDSGIYVLLANMYAEANMRKKADKVRVMMRHLGVEKVPGCSCIE 600
Query: 474 LKEVVEKLKV 483
L VV + V
Sbjct: 601 LNGVVHEFIV 610
Score = 108 bits (270), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 81/347 (23%), Positives = 152/347 (43%), Gaps = 62/347 (17%)
Query: 85 PNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNM 144
P+ TF L +CA+ G G K G ++ V+N+ ++ + G+M AR +
Sbjct: 119 PDHLTFPFLLKACARLQYRPYGAAVLGHVQKLGFSADVFVVNAGVHFWSVSGSMVLARRL 178
Query: 145 FVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSL 204
F + RD++SWN+++ G+VRSG A ELF W ++ G
Sbjct: 179 FDESPARDVVSWNTLIGGYVRSGLPREALELF----------WRLVEDG----------- 217
Query: 205 KLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLY 264
R ++ TM ++ C + G+ +H + ++ + L A++D+Y
Sbjct: 218 --------KAVRPDEVTMIGAVSGCAQMGDLELGKRLHEFVDSKGVRCTVRLMNAVMDMY 269
Query: 265 SKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLF-----------TALVN 313
KC +E+A+ VF+ + ++ +V W MI+GH G E+ LF AL+
Sbjct: 270 VKCGSLELAKSVFERIDNKTVVSWTTMIVGHARLGMMEDARMLFDEMPERDVFPWNALMA 329
Query: 314 GTVAG---------------GSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIK 358
G V + P+EIT + ++ AC + L G + ID +++
Sbjct: 330 GYVQNKQGKEAIALFHEMQESKVDPNEITMVNLLSACSQLGALEMG-MWVHHYIDRHQLY 388
Query: 359 PNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLL 405
+ A + ++YA ++A I +++P+ N ++ W +++
Sbjct: 389 LSVALGTSLVDMYAKCGNIKKAICIFKEIPDKN------ALTWTAMI 429
Score = 73.6 bits (179), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 60/293 (20%), Positives = 124/293 (42%), Gaps = 34/293 (11%)
Query: 23 WTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNG 82
WT ++ H A G + ++F + F NA++ Y + + + + +M ++
Sbjct: 293 WTTMIVGH-ARLGMMEDARMLFDEMPERDVFPWNALMAGYVQNKQGKEAIALFHEMQESK 351
Query: 83 FMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCAR 142
PN T V+L +C++ G +E G H ++ + + + SL++MY G + A
Sbjct: 352 VDPNEITMVNLLSACSQLGALEMGMWVHHYIDRHQLYLSVALGTSLVDMYAKCGNIKKAI 411
Query: 143 NMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGC 202
+F ++ ++ ++W + MI G + G+
Sbjct: 412 CIFKEIPDKNALTWTA-------------------------------MICGLANHGHADE 440
Query: 203 SLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYT-VRTSLKPNIILDTALI 261
+++ F+ M+ G + ++ T VL+AC + EGR + L+ + + +I
Sbjct: 441 AIEYFQRMIDLGLQPDEITFIGVLSACCHAGLVKEGRQFFSLMHEKYHLERKMKHYSCMI 500
Query: 262 DLYSKCQKVEVAQRVFDSMA-DRNLVCWNAMILGHCIHGKPEEGIKLFTALVN 313
DL + ++ A+++ ++M D + V W A+ +HG G K LV
Sbjct: 501 DLLGRAGHLDEAEQLVNTMPMDPDAVVWGALFFACRMHGNITLGEKAAMKLVE 553
>gi|224057446|ref|XP_002299231.1| predicted protein [Populus trichocarpa]
gi|222846489|gb|EEE84036.1| predicted protein [Populus trichocarpa]
Length = 668
Score = 268 bits (685), Expect = 5e-69, Method: Compositional matrix adjust.
Identities = 138/428 (32%), Positives = 235/428 (54%), Gaps = 10/428 (2%)
Query: 56 NAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALK 115
N++I Y P + + Y QMI P+ T + + +CA+ ++ G H +
Sbjct: 224 NSLINGYVRRRQPREAMGIYQQMITEHVKPDEVTMIGVVSACAQLESLKLGREIHRYIEE 283
Query: 116 NGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHEL 175
+G++ ++ ++N+L++MY G ++ + +F M + ++SW +++ G+ ++G + A +L
Sbjct: 284 SGLNLKISLVNALMDMYVKCGDLEAGKVLFDNMRKKTVVSWTTMIVGYAKNGLLDMAGKL 343
Query: 176 FDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARF 235
F MPE+NVV+WN MI ++ +L+LFREM S + + TM L+AC +
Sbjct: 344 FHDMPEKNVVAWNAMIGSCVQANLSFEALELFREMQWSNMKPDKVTMLHCLSACSQLGAL 403
Query: 236 NEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGH 295
+ G H Y + +L ++ L TALID+Y+KC + A +VF+ M RN + W A+I G
Sbjct: 404 DTGMWTHNYIKKHNLSLDVALGTALIDMYAKCGNMTKALQVFNEMPRRNSLTWTAIIGGL 463
Query: 296 CIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFY 355
++G + I F+ +++ + PDEITF+GV+ AC L+ EGRKYF QM +
Sbjct: 464 ALYGNVNDAIFYFSKMID-----SGLMPDEITFLGVLTACCHGGLVEEGRKYFDQMKSRF 518
Query: 356 KIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVA 415
+ P HY CM NL A L EEAEE+++ MP + D M +W +L C +
Sbjct: 519 NLSPQPKHYSCMVNLLGRAGLLEEAEELIKTMPMEADAM-----VWGALFFACGIHRNLL 573
Query: 416 MVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLK 475
+ ER A +D+DP D Y L N+Y AG+WE+ +R++M +R + + PG +++
Sbjct: 574 IGERAASKLLDLDPHDSGIYVLLANMYREAGKWEEAQNIRKMMMERGVEKTPGSSSIEVN 633
Query: 476 EVVEKLKV 483
++ + V
Sbjct: 634 GIINEFIV 641
Score = 146 bits (369), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 110/441 (24%), Positives = 193/441 (43%), Gaps = 68/441 (15%)
Query: 3 QLLQIQAHLITSGLFFNNSFWTINLLKHSA--DFGSPDYTVLVFKCINNPGTFCVNAVIK 60
QL QIQA +I +GL + F + L+ A + + DY + + + NP F NAVI+
Sbjct: 68 QLKQIQAQMILTGLILD-GFASSRLISFCAISESRNLDYCIKILNNLQNPNVFSWNAVIR 126
Query: 61 AYSNSCVPDQGVVFYLQMI-KNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVD 119
S P +G+V Y +M+ + G P++YT+ LF CA G G LK G D
Sbjct: 127 GCVESENPQKGLVLYKRMLTRAGCRPDNYTYSFLFKVCANLVLSYMGFEILGQVLKMGFD 186
Query: 120 FELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIM 179
++ + N +I+M G A +F + RDL+SWNS+++G+VR
Sbjct: 187 KDMYLYNGIIHMLVSVGESGLAHKVFDEGCVRDLVSWNSLINGYVRRRQ----------- 235
Query: 180 PERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGR 239
P ++ ++++M+ + ++ TM V++AC + GR
Sbjct: 236 --------------------PREAMGIYQQMITEHVKPDEVTMIGVVSACAQLESLKLGR 275
Query: 240 SVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHC--- 296
+H Y + L I L AL+D+Y KC +E + +FD+M + +V W MI+G+
Sbjct: 276 EIHRYIEESGLNLKISLVNALMDMYVKCGDLEAGKVLFDNMRKKTVVSWTTMIVGYAKNG 335
Query: 297 --------IHGKPEEGIKLFTALVNGTVAG---------------GSISPDEITFIGVIC 333
H PE+ + + A++ V ++ PD++T + +
Sbjct: 336 LLDMAGKLFHDMPEKNVVAWNAMIGSCVQANLSFEALELFREMQWSNMKPDKVTMLHCLS 395
Query: 334 ACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDN 393
AC + L G + I + + + A + ++YA +A ++ +MP N
Sbjct: 396 ACSQLGALDTGM-WTHNYIKKHNLSLDVALGTALIDMYAKCGNMTKALQVFNEMPRRN-- 452
Query: 394 MSFESIMWVSLLSLCRFQGAV 414
S+ W +++ G V
Sbjct: 453 ----SLTWTAIIGGLALYGNV 469
>gi|297817620|ref|XP_002876693.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297322531|gb|EFH52952.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 572
Score = 268 bits (684), Expect = 6e-69, Method: Compositional matrix adjust.
Identities = 150/442 (33%), Positives = 250/442 (56%), Gaps = 18/442 (4%)
Query: 52 TFCVNAVIKAYSNSCVPDQ---GVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGM 108
+F N +I+A ++ P Q + Y +M + P+ +TF L S + G
Sbjct: 23 SFVWNIIIRAIVHNVSPPQRHSPISVYFRMRHHCVSPDFHTFPFLLPSFHNPIHLPLGQR 82
Query: 109 CHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGD 168
H L G+D + V SL+NMY G + A +F + +DL +WNS+V+ + ++G
Sbjct: 83 THAQILLFGLDKDPFVRTSLLNMYSSCGDLSSALRIFDESVSKDLPAWNSVVNAYAKAGL 142
Query: 169 MSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMM-----KSGFRGNDKTMA 223
++ A +LFD MPERNV+SW+ +I+GY G +L LFREM + N TM+
Sbjct: 143 INHARKLFDEMPERNVISWSCLINGYVMCGKYKEALDLFREMQLPKPNEVFVSPNKFTMS 202
Query: 224 SVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSM-AD 282
+VL+ACGR +G+ VH Y + ++ +I+L TALID+Y+KC +E A+RVFD++ +
Sbjct: 203 TVLSACGRLGALEQGKWVHSYIDKYGVEIDIVLGTALIDMYAKCGSLERAKRVFDALGSK 262
Query: 283 RNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLT 342
+++ ++AMI ++G +E ++F+ + +I+P+ +TF+G++ ACV L+
Sbjct: 263 KDVKAYSAMICCLAMYGLTDECFQVFSEMTTSN----NINPNSVTFVGILGACVHRGLIN 318
Query: 343 EGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWV 402
+G+ YF+ M + + I P+ HY CM +LY + L +EAE + MP + D ++W
Sbjct: 319 KGKSYFKMMTEEFGITPSIQHYGCMVDLYGRSGLIKEAESFIASMPMEPD-----VLIWG 373
Query: 403 SLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRR 462
SLLS R G + E K +++DP + Y L NVYA G+W +V R+R M+ +
Sbjct: 374 SLLSGSRMLGDIKTCEGALKRLIELDPMNSGAYVLLSNVYAKTGRWIEVKRIRHEMEVKG 433
Query: 463 MGRMPGCRLVDLKEVVEKLKVG 484
+ ++PGC V+++ VV + VG
Sbjct: 434 IKKVPGCSYVEVEGVVHEFVVG 455
>gi|225423493|ref|XP_002274352.1| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
[Vitis vinifera]
Length = 536
Score = 268 bits (684), Expect = 6e-69, Method: Compositional matrix adjust.
Identities = 159/502 (31%), Positives = 263/502 (52%), Gaps = 11/502 (2%)
Query: 1 MKQLLQIQAHLITSGLFFNNSFWTINLLKHSAD--FGSPDYTVLVFKCINNPGTFCVNAV 58
MKQL + A ++T GL +SF LL + GS + +F+ I +P N +
Sbjct: 18 MKQLKEAHAQVLTCGLG-TDSFALSRLLAFCSHPLHGSLPHAWKLFQQIQHPTICICNTM 76
Query: 59 IKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGV 118
IKA+ + Y QM++NG P++YT + +CA G HG ++K G
Sbjct: 77 IKAFVLKGKLINTIQIYSQMLENGLYPDNYTLPYVLKACAGLQSCHLGESAHGQSVKLGF 136
Query: 119 DFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDI 178
F++ V N+LI MY FG + AR +F +M +SW ++SG+ + GD+ A LFD
Sbjct: 137 WFDIFVGNTLIAMYSSFGNVRAARCIFDEMPWHTAVSWTVMISGYAKVGDVETARMLFDE 196
Query: 179 MPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEG 238
P ++ W +ISGY ++ L++FR M +G ++ + S+L AC G
Sbjct: 197 APMKDRGIWGSIISGYVQNNCFKEGLQMFRLMQSTGLEPDEAILVSILCACAHLGAMEIG 256
Query: 239 RSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIH 298
VH Y + ++ L T LID+Y+KC +++A+++FD M+ R+ +CWNAMI G ++
Sbjct: 257 VWVHRYLDQLGHPLSVRLSTGLIDMYAKCGSLDIAKKLFDGMSQRDTICWNAMISGMAMN 316
Query: 299 GKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIK 358
G + ++LF+ + V PD+ITFI + AC + + E + M Y ++
Sbjct: 317 GDGDNALRLFSEMEKAGV-----KPDDITFIAIFTACSYSGMAHEAIRLLNSMCTVYNME 371
Query: 359 PNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVE 418
P HY C+ +L A L +EA+E++ KMP ++ + + ++I W +LLS C G + E
Sbjct: 372 PKSEHYGCIVDLLGRAGLLKEAKELILKMP-NSSSPTEQAIAWRALLSACCSHGQTEVAE 430
Query: 419 RLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLKEVV 478
A+ ++ Y L N+YA AG+ + V R+R++M+ R + + PGC V + VV
Sbjct: 431 DAAQRLFHLEHHS-GAYVLLSNLYAAAGKQDHVRRIRKMMENRGVDKAPGCSSVKINGVV 489
Query: 479 EKLKVGHFWRGGMKEEVNKMME 500
+ G M EEV++++E
Sbjct: 490 HEFIAGEETHLQM-EEVHRVLE 510
>gi|15227199|ref|NP_179827.1| protein slow growth 1 [Arabidopsis thaliana]
gi|75206347|sp|Q9SJZ3.1|PP169_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At2g22410, mitochondrial; Flags: Precursor
gi|4544450|gb|AAD22358.1| hypothetical protein [Arabidopsis thaliana]
gi|18086349|gb|AAL57637.1| At2g22410/F14M13.19 [Arabidopsis thaliana]
gi|309260071|gb|ADO62711.1| SLOW GROWTH1 [Arabidopsis thaliana]
gi|330252206|gb|AEC07300.1| protein slow growth 1 [Arabidopsis thaliana]
Length = 681
Score = 268 bits (684), Expect = 7e-69, Method: Compositional matrix adjust.
Identities = 137/423 (32%), Positives = 225/423 (53%), Gaps = 10/423 (2%)
Query: 56 NAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALK 115
N +I Y ++ + Y M G P+ T + L SC+ G + RG + +
Sbjct: 226 NCLINGYKKIGEAEKAIYVYKLMESEGVKPDDVTMIGLVSSCSMLGDLNRGKEFYEYVKE 285
Query: 116 NGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHEL 175
NG+ +P++N+L++M+ G + AR +F + R ++SW +++SG+ R G + + +L
Sbjct: 286 NGLRMTIPLVNALMDMFSKCGDIHEARRIFDNLEKRTIVSWTTMISGYARCGLLDVSRKL 345
Query: 176 FDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARF 235
FD M E++VV WN MI G ++ +L LF+EM S + ++ TM L+AC +
Sbjct: 346 FDDMEEKDVVLWNAMIGGSVQAKRGQDALALFQEMQTSNTKPDEITMIHCLSACSQLGAL 405
Query: 236 NEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGH 295
+ G +H Y + SL N+ L T+L+D+Y+KC + A VF + RN + + A+I G
Sbjct: 406 DVGIWIHRYIEKYSLSLNVALGTSLVDMYAKCGNISEALSVFHGIQTRNSLTYTAIIGGL 465
Query: 296 CIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFY 355
+HG I F +++ +A PDEITFIG++ AC ++ GR YF QM +
Sbjct: 466 ALHGDASTAISYFNEMIDAGIA-----PDEITFIGLLSACCHGGMIQTGRDYFSQMKSRF 520
Query: 356 KIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVA 415
+ P HY M +L A L EEA+ ++ MP M ++ +W +LL CR G V
Sbjct: 521 NLNPQLKHYSIMVDLLGRAGLLEEADRLMESMP-----MEADAAVWGALLFGCRMHGNVE 575
Query: 416 MVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLK 475
+ E+ AK +++DP D Y L +Y A WED R R +M +R + ++PGC +++
Sbjct: 576 LGEKAAKKLLELDPSDSGIYVLLDGMYGEANMWEDAKRARRMMNERGVEKIPGCSSIEVN 635
Query: 476 EVV 478
+V
Sbjct: 636 GIV 638
Score = 154 bits (388), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 129/519 (24%), Positives = 215/519 (41%), Gaps = 97/519 (18%)
Query: 3 QLLQIQAHLITSGLFFNNSFWTINLLKHSADFGSP--DYTVLVFKCINNPGTFCVNAVIK 60
L QIQA +I +GL + F + L+ A S DY+V + K I NP F N I+
Sbjct: 68 HLKQIQAQMIINGLILD-PFASSRLIAFCALSESRYLDYSVKILKGIENPNIFSWNVTIR 126
Query: 61 AYSNSCVPDQGVVFYLQMIKNG---FMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNG 117
+S S P + + Y QM+++G P+ +T+ LF CA G M G LK
Sbjct: 127 GFSESENPKESFLLYKQMLRHGCCESRPDHFTYPVLFKVCADLRLSSLGHMILGHVLKLR 186
Query: 118 VDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFD 177
++ V N+ I+M+ G M+ AR +F + RDL+SWN ++
Sbjct: 187 LELVSHVHNASIHMFASCGDMENARKVFDESPVRDLVSWNCLI----------------- 229
Query: 178 IMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNE 237
+GY K G ++ +++ M G + +D TM ++++C N
Sbjct: 230 --------------NGYKKIGEAEKAIYVYKLMESEGVKPDDVTMIGLVSSCSMLGDLNR 275
Query: 238 GRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCI 297
G+ + Y L+ I L AL+D++SKC + A+R+FD++ R +V W MI G+
Sbjct: 276 GKEFYEYVKENGLRMTIPLVNALMDMFSKCGDIHEARRIFDNLEKRTIVSWTTMISGYAR 335
Query: 298 HG-----------KPEEGIKLFTALVNGTVAG---------------GSISPDEITFIGV 331
G E+ + L+ A++ G+V + PDEIT I
Sbjct: 336 CGLLDVSRKLFDDMEEKDVVLWNAMIGGSVQAKRGQDALALFQEMQTSNTKPDEITMIHC 395
Query: 332 ICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDN 391
+ AC + L G + + I+ Y + N A + ++YA EA + + N
Sbjct: 396 LSACSQLGALDVG-IWIHRYIEKYSLSLNVALGTSLVDMYAKCGNISEALSVFHGIQTRN 454
Query: 392 D-----------------------------NMSFESIMWVSLLSLCRFQGAVAMVERL-- 420
++ + I ++ LLS C G +
Sbjct: 455 SLTYTAIIGGLALHGDASTAISYFNEMIDAGIAPDEITFIGLLSACCHGGMIQTGRDYFS 514
Query: 421 -AKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELM 458
KS +++PQ Y ++++ AG E+ R+ E M
Sbjct: 515 QMKSRFNLNPQ-LKHYSIMVDLLGRAGLLEEADRLMESM 552
>gi|449521645|ref|XP_004167840.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g31430-like, partial [Cucumis sativus]
Length = 735
Score = 267 bits (683), Expect = 8e-69, Method: Compositional matrix adjust.
Identities = 147/485 (30%), Positives = 265/485 (54%), Gaps = 10/485 (2%)
Query: 1 MKQLLQIQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIK 60
++Q +++ ++ +G+ +N + +L+ + + + +F + + N +I
Sbjct: 213 VRQGEKVRGFIVKTGMDLDNYVYN-SLIDMYYELSNVENAKKLFDEMTTRDSVSWNVMIS 271
Query: 61 AYSNSCVPDQGVVFYLQMIKNG-FMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVD 119
Y + + + +M + G P+ T VS +C +E G H K +
Sbjct: 272 GYVRCRRFEDAINTFREMQQEGNEKPDEATVVSTLSACTALKNLELGDEIHNYVRKE-LG 330
Query: 120 FELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIM 179
F + N+L++MY G ++ ARN+F +MS +++I W S++SG++ GD+ A +LFD
Sbjct: 331 FTTRIDNALLDMYAKCGCLNIARNIFDEMSMKNVICWTSMISGYINCGDLREARDLFDKS 390
Query: 180 PERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGR 239
P R+VV W MI+GY + + ++ LFREM + + T+ ++LT C + +G+
Sbjct: 391 PVRDVVLWTAMINGYVQFHHFDDAVALFREMQIQKIKPDKFTVVTLLTGCAQLGALEQGK 450
Query: 240 SVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHG 299
+HGY + ++++ TALI++YSKC V+ + +F + D++ W ++I G ++G
Sbjct: 451 WIHGYLDENRITMDVVVGTALIEMYSKCGCVDKSLEIFYELEDKDTASWTSIICGLAMNG 510
Query: 300 KPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKP 359
K E ++LF+ + G PD+ITFIGV+ AC L+ EGR++F M ++I+P
Sbjct: 511 KTSEALRLFSEMER---VGA--KPDDITFIGVLSACSHGGLVEEGRRFFNSMKKVHRIEP 565
Query: 360 NFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVER 419
HY C+ +L A L +EAEE+++++P +N + ++ +LLS CR V M ER
Sbjct: 566 KVEHYGCVIDLLGRAGLLDEAEELIQEIPIENCEIVVP--LYGALLSACRIHNNVDMGER 623
Query: 420 LAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLKEVVE 479
LAK +++ D S + L N+YA +WED +VR MK+ + +MPGC L+++ +V
Sbjct: 624 LAKKLENIESCDSSIHTLLANIYASVDRWEDAKKVRRKMKELGVKKMPGCSLIEVDGIVH 683
Query: 480 KLKVG 484
+ VG
Sbjct: 684 EFLVG 688
Score = 152 bits (383), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 113/430 (26%), Positives = 196/430 (45%), Gaps = 66/430 (15%)
Query: 1 MKQLLQIQAHLITSGLFFNNSFWTIN-LLKHSAD--FGSPDYTVLVFKCINNPGTFCVNA 57
M QL QIQ+ + GL + TIN L+ AD G+ Y +F + +P F N
Sbjct: 110 MDQLKQIQSQIFRIGLEGDRD--TINKLMAFCADSSLGNLRYAEKIFNYVQDPSLFVYNV 167
Query: 58 VIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNG 117
++K Y+ + + ++ + Q+ ++G P+ +T+ + + V +G G +K G
Sbjct: 168 MVKIYAKRGILRKVLLLFQQLREDGLWPDGFTYPFVLKAIGCLRDVRQGEKVRGFIVKTG 227
Query: 118 VDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFD 177
+D + V NSLI+MY ++ A+ +F +M+ RD +SWN ++SG+VR A
Sbjct: 228 MDLDNYVYNSLIDMYYELSNVENAKKLFDEMTTRDSVSWNVMISGYVRCRRFEDA----- 282
Query: 178 IMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDK-TMASVLTACGRSARFN 236
+ FREM + G D+ T+ S L+AC
Sbjct: 283 --------------------------INTFREMQQEGNEKPDEATVVSTLSACTALKNLE 316
Query: 237 EGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHC 296
G +H Y VR L +D AL+D+Y+KC + +A+ +FD M+ +N++CW +MI G+
Sbjct: 317 LGDEIHNY-VRKELGFTTRIDNALLDMYAKCGCLNIARNIFDEMSMKNVICWTSMISGYI 375
Query: 297 IHG-----------KPEEGIKLFTALVNGTVAG---------------GSISPDEITFIG 330
G P + L+TA++NG V I PD+ T +
Sbjct: 376 NCGDLREARDLFDKSPVRDVVLWTAMINGYVQFHHFDDAVALFREMQIQKIKPDKFTVVT 435
Query: 331 VICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPED 390
++ C + L +G K+ +D +I + + +Y+ +++ EI ++ ED
Sbjct: 436 LLTGCAQLGALEQG-KWIHGYLDENRITMDVVVGTALIEMYSKCGCVDKSLEIFYEL-ED 493
Query: 391 NDNMSFESIM 400
D S+ SI+
Sbjct: 494 KDTASWTSII 503
>gi|255576950|ref|XP_002529360.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223531180|gb|EEF33027.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 683
Score = 267 bits (683), Expect = 9e-69, Method: Compositional matrix adjust.
Identities = 149/489 (30%), Positives = 261/489 (53%), Gaps = 10/489 (2%)
Query: 6 QIQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSNS 65
+++ + +GL F+ ++ +L+ A D ++F + + N +I Y
Sbjct: 158 KLRGLVTKTGLEFD-TYVRNSLIDMYAQLALTDVMKMLFDEMPDRDVISWNVMISGYVKC 216
Query: 66 CVPDQGVVFYLQMIK-NGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPV 124
+ + + +M + +G MP+ T VS +C +E G H +++ V F +
Sbjct: 217 RRFEDAINVFCRMQEESGLMPDEATVVSTLSACTALKRLELGKKIHHY-VRDNVKFTPII 275
Query: 125 MNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNV 184
N+L++MY G + AR +F +M +++I W ++VSG+ G++ A ELF+ P R+V
Sbjct: 276 GNALLDMYCKCGCLSIARAVFEEMPSKNVICWTTMVSGYANCGELEEARELFEGSPIRDV 335
Query: 185 VSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGY 244
V W MI+GY + ++ LFREM + + + S+LT C ++ +G+ +H +
Sbjct: 336 VIWTAMINGYVQFNRFDEAVALFREMQIRKVKPDKFIVVSLLTGCAQTGAIEQGKWIHEF 395
Query: 245 TVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEG 304
+ + ++ TALI++Y+KC +E A +F + ++ W ++I G ++GK +
Sbjct: 396 IDENRIPIDAVVGTALIEMYAKCGFIEKALEIFYGLRVKDTASWTSIICGLAMNGKTSKA 455
Query: 305 IKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHY 364
++LF+ + + PD+ITFIGV+ AC L+ EGRK+F M Y+IKP HY
Sbjct: 456 LELFSKMKQ-----AGVRPDDITFIGVLSACSHGGLVEEGRKFFNSMRMEYQIKPKVEHY 510
Query: 365 WCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSF 424
C+ +L A L EAEE+++K+P++N ++ ++ SLLS CR G V M ER+AK
Sbjct: 511 GCLVDLLGRAGLLNEAEELIKKIPDENKAITVP--LYGSLLSACRIYGNVEMGERVAKQL 568
Query: 425 VDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLKEVVEKLKVG 484
V + D S + L N+YA A +WEDV +VR MK + + PGC +++ ++ + G
Sbjct: 569 VKFESSDSSVHTLLANIYAFADRWEDVTKVRRKMKDLGVKKTPGCSSIEVDSIIHEFFSG 628
Query: 485 HFWRGGMKE 493
H M+E
Sbjct: 629 HPSHPEMRE 637
Score = 152 bits (383), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 113/429 (26%), Positives = 194/429 (45%), Gaps = 64/429 (14%)
Query: 1 MKQLLQIQAHLITSGLFFNNSFWTIN-LLKHSAD--FGSPDYTVLVFKCINNPGTFCVNA 57
M L QI A + GL + ++N L+ D G+ +Y +FK I P N
Sbjct: 50 MTHLKQIHAQIFRVGL--HQDIVSLNKLMAFCTDPFNGNLNYAEKMFKYIRYPCLLIYNL 107
Query: 58 VIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNG 117
+IKA++ + +V + ++ ++G P+++T+ +F + G V + GL K G
Sbjct: 108 IIKAFAKKGNYKRTLVLFSKLREDGLWPDNFTYPFVFKAIGYLGEVSKAEKLRGLVTKTG 167
Query: 118 VDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFD 177
++F+ V NSLI+MY D + +F +M RD+ISWN ++SG+V+ A +F
Sbjct: 168 LEFDTYVRNSLIDMYAQLALTDVMKMLFDEMPDRDVISWNVMISGYVKCRRFEDAINVFC 227
Query: 178 IMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNE 237
M E +SG ++ T+ S L+AC R
Sbjct: 228 RMQE------------------------------ESGLMPDEATVVSTLSACTALKRLEL 257
Query: 238 GRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCI 297
G+ +H Y VR ++K I+ AL+D+Y KC + +A+ VF+ M +N++CW M+ G+
Sbjct: 258 GKKIHHY-VRDNVKFTPIIGNALLDMYCKCGCLSIARAVFEEMPSKNVICWTTMVSGYAN 316
Query: 298 HGKPEEGIKLF-----------TALVNGTVAGG---------------SISPDEITFIGV 331
G+ EE +LF TA++NG V + PD+ + +
Sbjct: 317 CGELEEARELFEGSPIRDVVIWTAMINGYVQFNRFDEAVALFREMQIRKVKPDKFIVVSL 376
Query: 332 ICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDN 391
+ C + + +G K+ + ID +I + + +YA E+A EI +
Sbjct: 377 LTGCAQTGAIEQG-KWIHEFIDENRIPIDAVVGTALIEMYAKCGFIEKALEIFYGL-RVK 434
Query: 392 DNMSFESIM 400
D S+ SI+
Sbjct: 435 DTASWTSII 443
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 60/258 (23%), Positives = 124/258 (48%), Gaps = 14/258 (5%)
Query: 151 RDLISWNSIVS--GHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFR 208
+D++S N +++ +G+++ A ++F + ++ +N++I ++K GN +L LF
Sbjct: 67 QDIVSLNKLMAFCTDPFNGNLNYAEKMFKYIRYPCLLIYNLIIKAFAKKGNYKRTLVLFS 126
Query: 209 EMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQ 268
++ + G ++ T V A G ++ + G +T L+ + + +LID+Y++
Sbjct: 127 KLREDGLWPDNFTYPFVFKAIGYLGEVSKAEKLRGLVTKTGLEFDTYVRNSLIDMYAQLA 186
Query: 269 KVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITF 328
+V + +FD M DR+++ WN MI G+ + E+ I +F + + + PDE T
Sbjct: 187 LTDVMKMLFDEMPDRDVISWNVMISGYVKCRRFEDAINVFCRMQEES----GLMPDEATV 242
Query: 329 IGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMP 388
+ + AC + L G+K + D K P + + ++Y A + +MP
Sbjct: 243 VSTLSACTALKRLELGKKIHHYVRDNVKFTPIIGN--ALLDMYCKCGCLSIARAVFEEMP 300
Query: 389 EDNDNMSFESIMWVSLLS 406
N I W +++S
Sbjct: 301 SKN------VICWTTMVS 312
>gi|356537880|ref|XP_003537434.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g48910-like [Glycine max]
Length = 638
Score = 267 bits (682), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 170/504 (33%), Positives = 267/504 (52%), Gaps = 32/504 (6%)
Query: 1 MKQLLQIQAHLITSGLFFNNSFWT-INLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVI 59
M++L Q+ A L+ +G +N+ T I L ++DF Y + VF + F N VI
Sbjct: 28 MRELKQVHAFLVKTGQTHDNAIATEILRLSATSDFRDIGYALSVFDQLPERNCFAWNTVI 87
Query: 60 KAYSNSCVP--DQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNG 117
+A + + D +VF + + PN +TF S+ +CA + G HGL LK G
Sbjct: 88 RALAETQDRHLDALLVFCQMLSEATVEPNQFTFPSVLKACAVMARLAEGKQVHGLLLKFG 147
Query: 118 -VDFELPVMNSLINMYGCFGAMDCARNMF---------VQMSPRD-------LISWNSIV 160
VD E V N L+ MY G+M+ A +F V+ RD ++ N +V
Sbjct: 148 LVDDEFVVTN-LLRMYVMCGSMEDANVLFYRNVEGVDDVRNLVRDERGREFNVVLCNVMV 206
Query: 161 SGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSG-FRGND 219
G+ R G++ AA ELFD M +R+VVSWN+MISGY+++G ++++F MM+ G N
Sbjct: 207 DGYARVGNLKAARELFDRMAQRSVVSWNVMISGYAQNGFYKEAIEIFHRMMQMGDVLPNR 266
Query: 220 KTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDS 279
T+ SVL A R G+ VH Y + ++ + +L +AL+D+Y+KC +E A +VF+
Sbjct: 267 VTLVSVLPAISRLGVLELGKWVHLYAEKNKIRIDDVLGSALVDMYAKCGSIEKAIQVFER 326
Query: 280 MADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAE 339
+ N++ WNA+I G +HGK + +F L G ISP ++T+I ++ AC A
Sbjct: 327 LPQNNVITWNAVIGGLAMHGKAND---IFNYLSRMEKCG--ISPSDVTYIAILSACSHAG 381
Query: 340 LLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESI 399
L+ EGR +F M++ +KP HY CM +L A EEAEE++ MP M + +
Sbjct: 382 LVDEGRSFFNDMVNSVGLKPKIEHYGCMVDLLGRAGYLEEAEELILNMP-----MKPDDV 436
Query: 400 MWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMK 459
+W +LL + + + R A+ + M P D Y L N+YA +G W+ VA VR +MK
Sbjct: 437 IWKALLGASKMHKNIKIGMRAAEVLMQMAPHDSGAYVALSNMYASSGNWDGVAAVRLMMK 496
Query: 460 KRRMGRMPGCRLVDLKEVVEKLKV 483
+ + PGC +++ V+ + V
Sbjct: 497 DMDIRKDPGCSWIEIDGVIHEFLV 520
>gi|357487459|ref|XP_003614017.1| Pentatricopeptide repeat protein [Medicago truncatula]
gi|355515352|gb|AES96975.1| Pentatricopeptide repeat protein [Medicago truncatula]
Length = 525
Score = 267 bits (682), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 164/499 (32%), Positives = 262/499 (52%), Gaps = 13/499 (2%)
Query: 1 MKQLLQIQAHLITSGLFFNNSFWTINLL----KHSADFGSPDYTVLVFKCINNPGTFCVN 56
MK L Q A + T+GL NN+F +L H S Y VF+ I NP N
Sbjct: 18 MKHLKQAHAQVFTTGLE-NNTFALSRVLAFCSSHKHHHESLTYACRVFEQIQNPTVCIYN 76
Query: 57 AVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKN 116
+IKA+ + + +++M+++ P++YT + +C G M HG + K
Sbjct: 77 TLIKAFLVNNKFKSALQVFVKMLQSELKPDNYTIPYVLKACGTFHDCSFGKMIHGYSSKL 136
Query: 117 GVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELF 176
G+ F++ V NSL+ MY FG + AR +F ++ +++SW+ ++SG+ + GD+ +A F
Sbjct: 137 GLVFDIYVGNSLMAMYCVFGDVVAARYVFDEIPSLNVVSWSVMISGYAKVGDVDSARLFF 196
Query: 177 DIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFN 236
D PE++ W MISGY ++ SL LFR M + ++ S+L+AC
Sbjct: 197 DEAPEKDKGIWGAMISGYVQNSCFKESLYLFRLMQLTDIVPDESIFVSILSACAHLGALE 256
Query: 237 EGRSVHGYTVRTSLKP-NIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGH 295
G +H + + L P ++ L T+L+D+Y+KC +E+A+R+FDSM R++VCWNAMI G
Sbjct: 257 IGVWIHQHLNQLKLVPLSVRLSTSLLDMYAKCGNLELAKRLFDSMNMRDVVCWNAMISGM 316
Query: 296 CIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFY 355
+HG + +KLF + + PD+ITFI V AC + + EG +M Y
Sbjct: 317 AMHGDGKGALKLFYDM-----EKVGVKPDDITFIAVFTACSYSGMAYEGLMLLDKMCSVY 371
Query: 356 KIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVA 415
I P HY C+ +L + A L EEA ++RK+ ++ N S E++ W + LS C G
Sbjct: 372 NIVPKSEHYGCLVDLLSRAGLFEEAMVMIRKIT-NSWNGSEETLAWRAFLSACCNHGETQ 430
Query: 416 MVERLAKSFVDMDPQDFS-RYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDL 474
+ E A+ + +D S Y L N+YA +G+ D RVR++MK + + PGC V++
Sbjct: 431 LAELAAEKVLQLDNHIHSGVYVLLSNLYAASGKHSDARRVRDMMKIKGTNKAPGCSSVEI 490
Query: 475 KEVVEKLKVGHFWRGGMKE 493
V+ + G M+E
Sbjct: 491 DGVISEFIAGEKTHPQMEE 509
>gi|15234044|ref|NP_193619.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75098703|sp|O49399.2|PP321_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g18840
gi|5738365|emb|CAA16741.2| putative protein [Arabidopsis thaliana]
gi|7268678|emb|CAB78886.1| putative protein [Arabidopsis thaliana]
gi|332658697|gb|AEE84097.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 545
Score = 267 bits (682), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 155/500 (31%), Positives = 257/500 (51%), Gaps = 46/500 (9%)
Query: 1 MKQLLQIQAHLITSGLFFNNSFWTINLLKHSADFGSP---DYTVLVFKCINNPGTFCVNA 57
+ ++ Q A ++ +GLF +++F L+ +A P Y + I +P F N+
Sbjct: 52 LTEIQQAHAFMLKTGLF-HDTFSASKLVAFAATNPEPKTVSYAHSILNRIGSPNGFTHNS 110
Query: 58 VIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNG 117
VI+AY+NS P+ + + +M+ P+ Y+F + +CA E G HGL +K+G
Sbjct: 111 VIRAYANSSTPEVALTVFREMLLGPVFPDKYSFTFVLKACAAFCGFEEGRQIHGLFIKSG 170
Query: 118 VDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSI------------------ 159
+ ++ V N+L+N+YG G + AR + +M RD +SWNS+
Sbjct: 171 LVTDVFVENTLVNVYGRSGYFEIARKVLDRMPVRDAVSWNSLLSAYLEKGLVDEARALFD 230
Query: 160 -------------VSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKL 206
+SG+ +G + A E+FD MP R+VVSWN M++ Y+ G L++
Sbjct: 231 EMEERNVESWNFMISGYAAAGLVKEAKEVFDSMPVRDVVSWNAMVTAYAHVGCYNEVLEV 290
Query: 207 FREMMKSGFRGNDK-TMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYS 265
F +M+ D T+ SVL+AC ++G VH Y + ++ L TAL+D+YS
Sbjct: 291 FNKMLDDSTEKPDGFTLVSVLSACASLGSLSQGEWVHVYIDKHGIEIEGFLATALVDMYS 350
Query: 266 KCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDE 325
KC K++ A VF + + R++ WN++I +HG ++ +++F+ +V P+
Sbjct: 351 KCGKIDKALEVFRATSKRDVSTWNSIISDLSVHGLGKDALEIFSEMVY-----EGFKPNG 405
Query: 326 ITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILR 385
ITFIGV+ AC +L + RK F M Y+++P HY CM +L EEAEE++
Sbjct: 406 ITFIGVLSACNHVGMLDQARKLFEMMSSVYRVEPTIEHYGCMVDLLGRMGKIEEAEELVN 465
Query: 386 KMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVA 445
++P D SI+ SLL C+ G + ER+A ++++ +D S Y + N+YA
Sbjct: 466 EIPADE-----ASILLESLLGACKRFGQLEQAERIANRLLELNLRDSSGYAQMSNLYASD 520
Query: 446 GQWEDVARVRELMKKRRMGR 465
G+WE V R M+ R+ R
Sbjct: 521 GRWEKVIDGRRNMRAERVNR 540
>gi|356565531|ref|XP_003550993.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
chloroplastic-like [Glycine max]
Length = 628
Score = 267 bits (682), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 155/489 (31%), Positives = 255/489 (52%), Gaps = 22/489 (4%)
Query: 3 QLLQIQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAY 62
LLQI A L+ GL ++ L + A G ++V +F NP F +I A+
Sbjct: 38 HLLQIHAALLRRGLH-HHPILNFKLQRSYASLGHLHHSVTLFHRTPNPNVFLWTHIINAH 96
Query: 63 SNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFEL 122
++ + + +Y QM+ + PN++T SL +C + H A+K G+ L
Sbjct: 97 AHFDLFHHALSYYSQMLTHPIQPNAFTLSSLLKACT----LHPARAVHSHAIKFGLSSHL 152
Query: 123 PVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPER 182
V L++ Y G + A+ +F M R L+S+ ++++ + + G + A LF+ M +
Sbjct: 153 YVSTGLVDAYARGGDVASAQKLFDAMPERSLVSYTAMLTCYAKHGMLPEARVLFEGMGMK 212
Query: 183 NVVSWNIMISGYSKSGNPGCSLKLFREMMKSG-------FRGNDKTMASVLTACGRSARF 235
+VV WN+MI GY++ G P +L FR+MM R N+ T+ +VL++CG+
Sbjct: 213 DVVCWNVMIDGYAQHGCPNEALVFFRKMMMMMGGNGNGKVRPNEITVVAVLSSCGQVGAL 272
Query: 236 NEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGH 295
G+ VH Y +K N+ + TAL+D+Y KC +E A++VFD M +++V WN+MI+G+
Sbjct: 273 ECGKWVHSYVENNGIKVNVRVGTALVDMYCKCGSLEDARKVFDVMEGKDVVAWNSMIMGY 332
Query: 296 CIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFY 355
IHG +E ++LF + + P +ITF+ V+ AC A L+++G + F M D Y
Sbjct: 333 GIHGFSDEALQLFHEM-----CCIGVKPSDITFVAVLTACAHAGLVSKGWEVFDSMKDGY 387
Query: 356 KIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVA 415
++P HY CM NL A +EA +++R M + D ++W +LL CR V+
Sbjct: 388 GMEPKVEHYGCMVNLLGRAGRMQEAYDLVRSMEVEPD-----PVLWGTLLWACRIHSNVS 442
Query: 416 MVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLK 475
+ E +A+ V Y L N+YA A W VA+VR +MK + + PGC +++K
Sbjct: 443 LGEEIAEILVSNGLASSGTYVLLSNMYAAARNWVGVAKVRSMMKGSGVEKEPGCSSIEVK 502
Query: 476 EVVEKLKVG 484
V + G
Sbjct: 503 NRVHEFVAG 511
>gi|449457225|ref|XP_004146349.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g31430-like [Cucumis sativus]
Length = 781
Score = 266 bits (681), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 147/485 (30%), Positives = 265/485 (54%), Gaps = 10/485 (2%)
Query: 1 MKQLLQIQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIK 60
++Q +++ ++ +G+ +N + +L+ + + + +F + + N +I
Sbjct: 259 VRQGEKVRGFIVKTGMDLDNYVYN-SLIDMYYELSNVENAKKLFDEMTTRDSVSWNVMIS 317
Query: 61 AYSNSCVPDQGVVFYLQMIKNG-FMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVD 119
Y + + + +M + G P+ T VS +C +E G H K +
Sbjct: 318 GYVRCRRFEDAINTFREMQQEGNEKPDEATVVSTLSACTALKNLELGDEIHNYVRKE-LG 376
Query: 120 FELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIM 179
F + N+L++MY G ++ ARN+F +MS +++I W S++SG++ GD+ A +LFD
Sbjct: 377 FTTRIDNALLDMYAKCGCLNIARNIFDEMSMKNVICWTSMISGYINCGDLREARDLFDKS 436
Query: 180 PERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGR 239
P R+VV W MI+GY + + ++ LFREM + + T+ ++LT C + +G+
Sbjct: 437 PVRDVVLWTAMINGYVQFHHFDDAVALFREMQIQRVKPDKFTVVTLLTGCAQLGALEQGK 496
Query: 240 SVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHG 299
+HGY + ++++ TALI++YSKC V+ + +F + D++ W ++I G ++G
Sbjct: 497 WIHGYLDENRITMDVVVGTALIEMYSKCGCVDKSLEIFYELEDKDTASWTSIICGLAMNG 556
Query: 300 KPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKP 359
K E ++LF+ + G PD+ITFIGV+ AC L+ EGR++F M ++I+P
Sbjct: 557 KTSEALRLFSEMER---VGA--KPDDITFIGVLSACSHGGLVEEGRRFFNSMKKVHRIEP 611
Query: 360 NFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVER 419
HY C+ +L A L +EAEE+++++P +N + ++ +LLS CR V M ER
Sbjct: 612 KVEHYGCVIDLLGRAGLLDEAEELIQEIPIENCEIVVP--LYGALLSACRIHNNVDMGER 669
Query: 420 LAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLKEVVE 479
LAK +++ D S + L N+YA +WED +VR MK+ + +MPGC L+++ +V
Sbjct: 670 LAKKLENIESCDSSIHTLLANIYASVDRWEDAKKVRRKMKELGVKKMPGCSLIEVDGIVH 729
Query: 480 KLKVG 484
+ VG
Sbjct: 730 EFLVG 734
Score = 151 bits (381), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 112/430 (26%), Positives = 196/430 (45%), Gaps = 66/430 (15%)
Query: 1 MKQLLQIQAHLITSGLFFNNSFWTIN-LLKHSAD--FGSPDYTVLVFKCINNPGTFCVNA 57
M QL QIQ+ + GL + TIN L+ AD G+ Y +F + +P F N
Sbjct: 156 MDQLKQIQSQIFRIGLEGDRD--TINKLMAFCADSSLGNLRYAEKIFNYVQDPSLFVYNV 213
Query: 58 VIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNG 117
++K Y+ + + ++ + Q+ ++G P+ +T+ + + V +G G +K G
Sbjct: 214 MVKMYAKRGILRKVLLLFQQLREDGLWPDGFTYPFVLKAIGCLRDVRQGEKVRGFIVKTG 273
Query: 118 VDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFD 177
+D + V NSLI+MY ++ A+ +F +M+ RD +SWN ++SG+VR A
Sbjct: 274 MDLDNYVYNSLIDMYYELSNVENAKKLFDEMTTRDSVSWNVMISGYVRCRRFEDA----- 328
Query: 178 IMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDK-TMASVLTACGRSARFN 236
+ FREM + G D+ T+ S L+AC
Sbjct: 329 --------------------------INTFREMQQEGNEKPDEATVVSTLSACTALKNLE 362
Query: 237 EGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHC 296
G +H Y VR L +D AL+D+Y+KC + +A+ +FD M+ +N++CW +MI G+
Sbjct: 363 LGDEIHNY-VRKELGFTTRIDNALLDMYAKCGCLNIARNIFDEMSMKNVICWTSMISGYI 421
Query: 297 IHG-----------KPEEGIKLFTALVNGTVAG---------------GSISPDEITFIG 330
G P + L+TA++NG V + PD+ T +
Sbjct: 422 NCGDLREARDLFDKSPVRDVVLWTAMINGYVQFHHFDDAVALFREMQIQRVKPDKFTVVT 481
Query: 331 VICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPED 390
++ C + L +G K+ +D +I + + +Y+ +++ EI ++ ED
Sbjct: 482 LLTGCAQLGALEQG-KWIHGYLDENRITMDVVVGTALIEMYSKCGCVDKSLEIFYEL-ED 539
Query: 391 NDNMSFESIM 400
D S+ SI+
Sbjct: 540 KDTASWTSII 549
>gi|413944077|gb|AFW76726.1| hypothetical protein ZEAMMB73_427029 [Zea mays]
Length = 646
Score = 266 bits (681), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 140/421 (33%), Positives = 227/421 (53%), Gaps = 16/421 (3%)
Query: 58 VIKAYSNSCVPDQG-VVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKN 116
+I Y+ +PD+ VF ++ PN T V+ + + G + G H +++
Sbjct: 203 LIDGYARGGLPDEAWRVFCRMVVAESVWPNEVTLVAAASAAGQMGLLGLGRTVHQCIVES 262
Query: 117 GVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELF 176
G + + N+L++M+G G + A+ +F M +D+ SW S+VS + + GD+ A +LF
Sbjct: 263 GGRMSVNLENALVDMFGKCGCVAAAKEVFDGMPIKDVYSWTSMVSAYAKCGDLENAAKLF 322
Query: 177 DIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFN 236
+P RNVVSW+ M++ YS + P ++++F +M+ +G D T+ SVL+AC + +
Sbjct: 323 KEIPNRNVVSWSCMVAAYSHANMPDEAIRIFNDMIAAGVEPIDATLVSVLSACAQLCSLD 382
Query: 237 EGRSVHGYTV---RTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMIL 293
G ++ + + L PN L A ID+++KC V A R+F +M D+N+V WN MI+
Sbjct: 383 VGTWLYDTYIVSHKVELTPN--LSNAFIDMFAKCGDVGAASRLFSNMEDKNVVSWNTMIM 440
Query: 294 GHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMID 353
H +HG+PEE + LF G I PDE T+IGV+ AC L++EGR +F++M
Sbjct: 441 AHGLHGQPEEALHLFQEF-----KGNGILPDEATYIGVLSACSHGGLVSEGRCHFKEMKI 495
Query: 354 FYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGA 413
Y I+P HY CM +L L +EA E+ R MP D W +LL+ CR G
Sbjct: 496 VYGIEPRAEHYACMIDLLGKVGLLQEAFEVARSMPVGADEAG-----WGALLNACRMHGN 550
Query: 414 VAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVD 473
V + + A +DP D Y + +YA +W V +R +M+ RR+ + PGC ++
Sbjct: 551 VEIGKCAADKLAGLDPSDSGIYVLMSQIYASKSKWGQVKMLRTVMRDRRVKKNPGCSSIE 610
Query: 474 L 474
+
Sbjct: 611 V 611
Score = 92.8 bits (229), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 78/395 (19%), Positives = 167/395 (42%), Gaps = 74/395 (18%)
Query: 40 TVLVFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAK 99
++ +C P + + +++ + + P + + +++++ ++ T V + A
Sbjct: 85 AAVLAQCTEGPNAYMLATMMRGFLRAGKPTHALTLFRRVLRDRLAVDARTIVFAVKAAAT 144
Query: 100 TGCVERGGMCHGLALKNG-VDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNS 158
+ H +A K G + + N+L++MY + AR +F +M+ RD++SW +
Sbjct: 145 SSSPTEA--IHCVAFKRGFIGQSVLAGNALVHMYTSSMLLPDARKLFDEMADRDVVSWTT 202
Query: 159 IVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGN 218
++ G+ R G +P+ +W + R ++ N
Sbjct: 203 LIDGYARGG-----------LPDE---AWRVFC----------------RMVVAESVWPN 232
Query: 219 DKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFD 278
+ T+ + +A G+ GR+VH V + + ++ L+ AL+D++ KC V A+ VFD
Sbjct: 233 EVTLVAAASAAGQMGLLGLGRTVHQCIVESGGRMSVNLENALVDMFGKCGCVAAAKEVFD 292
Query: 279 SM-------------------------------ADRNLVCWNAMILGHCIHGKPEEGIKL 307
M +RN+V W+ M+ + P+E I++
Sbjct: 293 GMPIKDVYSWTSMVSAYAKCGDLENAAKLFKEIPNRNVVSWSCMVAAYSHANMPDEAIRI 352
Query: 308 FTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIK--PNFAHYW 365
F N +A G + P + T + V+ AC + L G + I +K++ PN ++ +
Sbjct: 353 F----NDMIAAG-VEPIDATLVSVLSACAQLCSLDVGTWLYDTYIVSHKVELTPNLSNAF 407
Query: 366 CMANLYAGAELTEEAEEILRKMPEDNDNMSFESIM 400
+++A A + M ED + +S+ +++
Sbjct: 408 I--DMFAKCGDVGAASRLFSNM-EDKNVVSWNTMI 439
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 57/266 (21%), Positives = 123/266 (46%), Gaps = 17/266 (6%)
Query: 190 MISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTS 249
M+ G+ ++G P +L LFR +++ + +T+ + A S+ E + R
Sbjct: 103 MMRGFLRAGKPTHALTLFRRVLRDRLAVDARTIVFAVKAAATSSSPTEAIHCVAFK-RGF 161
Query: 250 LKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFT 309
+ +++ AL+ +Y+ + A+++FD MADR++V W +I G+ G P+E ++F
Sbjct: 162 IGQSVLAGNALVHMYTSSMLLPDARKLFDEMADRDVVSWTTLIDGYARGGLPDEAWRVFC 221
Query: 310 ALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDF-YKIKPNFAHYWCMA 368
+ V S+ P+E+T + A + LL GR + +++ ++ N + +
Sbjct: 222 RM----VVAESVWPNEVTLVAAASAAGQMGLLGLGRTVHQCIVESGGRMSVNLEN--ALV 275
Query: 369 NLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMD 428
+++ A+E+ MP + W S++S G +E AK F ++
Sbjct: 276 DMFGKCGCVAAAKEVFDGMPIK------DVYSWTSMVSAYAKCGD---LENAAKLFKEIP 326
Query: 429 PQDFSRYQFLLNVYAVAGQWEDVARV 454
++ + ++ Y+ A ++ R+
Sbjct: 327 NRNVVSWSCMVAAYSHANMPDEAIRI 352
>gi|359473281|ref|XP_003631282.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g40405-like [Vitis vinifera]
Length = 615
Score = 266 bits (680), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 153/489 (31%), Positives = 256/489 (52%), Gaps = 17/489 (3%)
Query: 1 MKQLLQIQAHLITSGLFFNNSFWTINLLKHSADFGSPD---YTVLVFKCINNPGTFCVNA 57
+++L QI L+ +GL N + S +P+ Y+ V NP F N+
Sbjct: 22 LRELKQIHTQLLINGLL--NDPQLVGQFVASIALNNPNNLHYSNQVLDNSQNPTLFTFNS 79
Query: 58 VIKAYSNSCVPDQGVVFYLQMIKN-GFM-PNSYTFVSLFGSCAKTGCVERGGMCHGLALK 115
+I+A+S S P + FY +++ + G++ P++YTF L + A+ G HG A+K
Sbjct: 80 MIRAHSKSSTPHRSFHFYSRILHSAGYLAPDNYTFTFLVRTSAQLLAHGTGSSVHGAAVK 139
Query: 116 NGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHEL 175
G +++ V + LI MY G +D +F + DL+ ++VS + GD+ A +L
Sbjct: 140 YGFEYDPHVQSGLIYMYAELGGLDACHRVFSSICEPDLVCQTAMVSACAKMGDVGFARKL 199
Query: 176 FDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARF 235
FD M ++ ++WN MISGY + G +L LF M + G + N+ +M SVL+AC
Sbjct: 200 FDKMSHKDPIAWNAMISGYVQCGQSREALSLFNLMQREGVKVNEVSMVSVLSACSHLGAL 259
Query: 236 NEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGH 295
++GR H Y R L+ + L TALID+Y+KC + A VF M ++N+ W++ I G
Sbjct: 260 DQGRWAHAYIERNKLRMTLTLGTALIDMYAKCGNMNKAMEVFWGMKEKNVYTWSSAIGGL 319
Query: 296 CIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFY 355
++G E+ ++LF+ + S+ P+EITF+ V+ C L+ EGRK+F M Y
Sbjct: 320 AMNGAGEKCLELFSLMKQ-----DSVQPNEITFVSVLRGCSVVGLVEEGRKHFESMSKVY 374
Query: 356 KIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVA 415
I+P HY CM +LY A +EA + MP + W +LL+ C+ +
Sbjct: 375 GIEPRLEHYGCMVDLYGRAGHLDEALNFINSMP-----VRPHVGAWGALLNACKIYRNME 429
Query: 416 MVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLK 475
M E ++ V+++ ++ Y L N+YA + W+ V+ VR+ M + + + PGC ++++
Sbjct: 430 MGELASRKIVELEAKNHGAYVLLSNIYADSKDWDRVSNVRQTMNVKGVRKQPGCSVIEVG 489
Query: 476 EVVEKLKVG 484
V + VG
Sbjct: 490 GEVHEFFVG 498
>gi|356565095|ref|XP_003550780.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g74630-like [Glycine max]
Length = 640
Score = 266 bits (680), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 160/519 (30%), Positives = 265/519 (51%), Gaps = 46/519 (8%)
Query: 1 MKQLLQIQAHLITSGLFFNNSFWTINLLKHSADFGSP--DYTVLVFKCINNPGTFCVNAV 58
+K QI A + +GL + + LL H A S Y + +F NP TF N +
Sbjct: 15 LKPTKQIHAQICKTGLHTDPLVFG-KLLLHCAITISDALHYALRLFHHFPNPDTFMHNTL 73
Query: 59 IKAYSNSCVPDQGVVFYLQMIKNGFM-PNSYTFVSLFGSCAKTGCVERGGMCHGLALKNG 117
I++ S S P + ++Q+ + + P+S+TF + A + + G H A ++G
Sbjct: 74 IRSLSLSQTPLSSLHPFIQLRRQPTLSPDSFTFAFALKAVANSRHLRPGIQLHSQAFRHG 133
Query: 118 VDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFD 177
D + V +LI+MY G AR +F +MS ++++WN++++ R GD+ A ++F
Sbjct: 134 FDAHIFVGTTLISMYAECGDSGSARRVFDEMSEPNVVTWNAVLTAAFRCGDVEGAQDVFG 193
Query: 178 IMPERNVVSWNIMISGYSKSGNPGCSLKLF------------------------------ 207
MP RN+ SWN M++GY+K+G G + ++F
Sbjct: 194 CMPVRNLTSWNGMLAGYAKAGELGLARRVFYEMPLRDEVSWSTMIVGFAHNGCFDEAFGF 253
Query: 208 -REMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSK 266
RE+++ R N+ ++ VL+AC ++ F G+ +HG+ + ++ ALID YSK
Sbjct: 254 FRELLREEIRTNEVSLTGVLSACAQAGAFEFGKILHGFVEKAGFLYVGSVNNALIDTYSK 313
Query: 267 CQKVEVAQRVFDSM-ADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDE 325
C V +A+ VF +M R++V W ++I G +HG EE I+LF + V PD
Sbjct: 314 CGNVAMARLVFQNMPVARSIVSWTSIIAGLAMHGCGEEAIQLFHEMEESGV-----RPDG 368
Query: 326 ITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILR 385
ITFI ++ AC + L+ EG F +M + Y I+P HY CM +LY A ++A E +
Sbjct: 369 ITFISLLYACSHSGLVEEGCGLFSKMKNLYGIEPAIEHYGCMVDLYGRAARLQKAYEFIC 428
Query: 386 KMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVA 445
+MP +S +I+W +LL C G + M E + +MDP + + L NVYAVA
Sbjct: 429 EMP-----VSPNAIIWRTLLGACSIHGNIEMAELVKARLAEMDPDNSGDHVLLSNVYAVA 483
Query: 446 GQWEDVARVRELMKKRRMGRMPGCRLVDLKEVVEKLKVG 484
G+W+DV+ +R M + M + PG ++++ +V+ G
Sbjct: 484 GKWKDVSSIRRTMTEHSMKKTPGWSMIEIDKVIYGFVAG 522
>gi|359485813|ref|XP_003633340.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Vitis vinifera]
Length = 679
Score = 266 bits (680), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 170/566 (30%), Positives = 279/566 (49%), Gaps = 76/566 (13%)
Query: 2 KQLLQIQAHLITSGLFFNNSFWTINLLKHSADFGSPD--YTVLVFKCINNPGTFCVNAVI 59
+++ Q+ A + + +F N+ F + LL +D D Y +F I N +I
Sbjct: 27 QEVEQLHAFSLKTAIF-NHPFVSSRLLALYSDPKINDLGYARSIFDRIQRRSLIHWNTII 85
Query: 60 KAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNG-- 117
K Y + G+V + +++ ++P+++T + CA+ G V+ G HGLALK G
Sbjct: 86 KCYVENQFSHDGIVLFHELVHE-YLPDNFTLPCVIKGCARLGVVQEGKQIHGLALKIGFG 144
Query: 118 -----------------------------VDFELPVMNSLINMYGCFGAMDCA------- 141
+D ++ + NSLI+ Y G +D A
Sbjct: 145 SDVFVQGSLVNMYSKCGEIDCARKVFDGMIDKDVVLWNSLIDGYARCGEIDIALQLFEEM 204
Query: 142 ------------------------RNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFD 177
R +F QM R+L+SWN++++G+++SGD +A ELF
Sbjct: 205 PERDAFSWTVLVDGLSKCGKVESARKLFDQMPCRNLVSWNAMINGYMKSGDFDSALELFY 264
Query: 178 IMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNE 237
MP ++V+WN+MI+GY +G ++K+F M+K G R + T+ SVL+A A +
Sbjct: 265 QMPIWDLVTWNLMIAGYELNGQFMDAVKMFFMMLKLGSRPSHATLVSVLSAVSGLAVLGK 324
Query: 238 GRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCI 297
GR +H Y + + + IL T+LI++Y+KC +E A VF ++ + + W A+I+G I
Sbjct: 325 GRWIHSYMEKNGFELDGILGTSLIEMYAKCGCIESALTVFRAIQKKKVGHWTAIIVGLGI 384
Query: 298 HGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKI 357
HG + LF + + P+ I FIGV+ AC A L+ +GR+YF M++ YKI
Sbjct: 385 HGMANHALALFLEMCK-----TGLKPNAIIFIGVLNACNHAGLVDDGRQYFDMMMNEYKI 439
Query: 358 KPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMV 417
+P HY C+ ++ A EEA+ + MP +S ++W+SLL R G + +
Sbjct: 440 EPTLEHYGCLVDILCRAGHLEEAKNTIENMP-----ISPNKVIWMSLLGGSRNHGKIDIG 494
Query: 418 ERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLKEV 477
E A+ +++ P+ Y L N+YA +G WE V+ VRE+M KR + PGC V+ K
Sbjct: 495 EYAAQRVIEVAPETIGCYILLSNMYAASGMWEKVSHVREMMYKRGFRKDPGCSSVEHKGT 554
Query: 478 VEKLKVGHFWRGGMKEEVNKMMECRQ 503
+ + VG KE KM E ++
Sbjct: 555 LHEFIVGDISHPQTKEIYAKMSEMKE 580
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 70/298 (23%), Positives = 133/298 (44%), Gaps = 62/298 (20%)
Query: 104 ERGGMC--------HGLALKNGVDFELPVMNS-LINMYG--CFGAMDCARNMFVQMSPRD 152
+R G+C H +LK + F P ++S L+ +Y + AR++F ++ R
Sbjct: 19 QRMGLCAPQEVEQLHAFSLKTAI-FNHPFVSSRLLALYSDPKINDLGYARSIFDRIQRRS 77
Query: 153 LISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMK 212
LI WN+I+ +V + +S G + LF E++
Sbjct: 78 LIHWNTIIKCYVE--------------------------NQFSHDG-----IVLFHELVH 106
Query: 213 SGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEV 272
+ ++ T+ V+ C R EG+ +HG ++ ++ + +L+++YSKC +++
Sbjct: 107 E-YLPDNFTLPCVIKGCARLGVVQEGKQIHGLALKIGFGSDVFVQGSLVNMYSKCGEIDC 165
Query: 273 AQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVI 332
A++VFD M D+++V WN++I G+ G+ + ++LF + ++ D ++
Sbjct: 166 ARKVFDGMIDKDVVLWNSLIDGYARCGEIDIALQLFEEMPERDAFSWTVLVDGLS----- 220
Query: 333 CACVRAELLTEGRKYFRQMIDFYKIKP--NFAHYWCMANLYAGAELTEEAEEILRKMP 388
C + E RK F QM P N + M N Y + + A E+ +MP
Sbjct: 221 -KCGKVE---SARKLFDQM-------PCRNLVSWNAMINGYMKSGDFDSALELFYQMP 267
>gi|413944078|gb|AFW76727.1| hypothetical protein ZEAMMB73_427029 [Zea mays]
Length = 794
Score = 266 bits (679), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 140/421 (33%), Positives = 227/421 (53%), Gaps = 16/421 (3%)
Query: 58 VIKAYSNSCVPDQG-VVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKN 116
+I Y+ +PD+ VF ++ PN T V+ + + G + G H +++
Sbjct: 203 LIDGYARGGLPDEAWRVFCRMVVAESVWPNEVTLVAAASAAGQMGLLGLGRTVHQCIVES 262
Query: 117 GVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELF 176
G + + N+L++M+G G + A+ +F M +D+ SW S+VS + + GD+ A +LF
Sbjct: 263 GGRMSVNLENALVDMFGKCGCVAAAKEVFDGMPIKDVYSWTSMVSAYAKCGDLENAAKLF 322
Query: 177 DIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFN 236
+P RNVVSW+ M++ YS + P ++++F +M+ +G D T+ SVL+AC + +
Sbjct: 323 KEIPNRNVVSWSCMVAAYSHANMPDEAIRIFNDMIAAGVEPIDATLVSVLSACAQLCSLD 382
Query: 237 EGRSVHGYTV---RTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMIL 293
G ++ + + L PN L A ID+++KC V A R+F +M D+N+V WN MI+
Sbjct: 383 VGTWLYDTYIVSHKVELTPN--LSNAFIDMFAKCGDVGAASRLFSNMEDKNVVSWNTMIM 440
Query: 294 GHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMID 353
H +HG+PEE + LF G I PDE T+IGV+ AC L++EGR +F++M
Sbjct: 441 AHGLHGQPEEALHLFQEF-----KGNGILPDEATYIGVLSACSHGGLVSEGRCHFKEMKI 495
Query: 354 FYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGA 413
Y I+P HY CM +L L +EA E+ R MP D W +LL+ CR G
Sbjct: 496 VYGIEPRAEHYACMIDLLGKVGLLQEAFEVARSMPVGADEAG-----WGALLNACRMHGN 550
Query: 414 VAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVD 473
V + + A +DP D Y + +YA +W V +R +M+ RR+ + PGC ++
Sbjct: 551 VEIGKCAADKLAGLDPSDSGIYVLMSQIYASKSKWGQVKMLRTVMRDRRVKKNPGCSSIE 610
Query: 474 L 474
+
Sbjct: 611 V 611
Score = 92.4 bits (228), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 78/395 (19%), Positives = 167/395 (42%), Gaps = 74/395 (18%)
Query: 40 TVLVFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAK 99
++ +C P + + +++ + + P + + +++++ ++ T V + A
Sbjct: 85 AAVLAQCTEGPNAYMLATMMRGFLRAGKPTHALTLFRRVLRDRLAVDARTIVFAVKAAAT 144
Query: 100 TGCVERGGMCHGLALKNG-VDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNS 158
+ H +A K G + + N+L++MY + AR +F +M+ RD++SW +
Sbjct: 145 SSSPTEA--IHCVAFKRGFIGQSVLAGNALVHMYTSSMLLPDARKLFDEMADRDVVSWTT 202
Query: 159 IVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGN 218
++ G+ R G +P+ +W + R ++ N
Sbjct: 203 LIDGYARGG-----------LPDE---AWRVFC----------------RMVVAESVWPN 232
Query: 219 DKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFD 278
+ T+ + +A G+ GR+VH V + + ++ L+ AL+D++ KC V A+ VFD
Sbjct: 233 EVTLVAAASAAGQMGLLGLGRTVHQCIVESGGRMSVNLENALVDMFGKCGCVAAAKEVFD 292
Query: 279 SM-------------------------------ADRNLVCWNAMILGHCIHGKPEEGIKL 307
M +RN+V W+ M+ + P+E I++
Sbjct: 293 GMPIKDVYSWTSMVSAYAKCGDLENAAKLFKEIPNRNVVSWSCMVAAYSHANMPDEAIRI 352
Query: 308 FTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIK--PNFAHYW 365
F N +A G + P + T + V+ AC + L G + I +K++ PN ++ +
Sbjct: 353 F----NDMIAAG-VEPIDATLVSVLSACAQLCSLDVGTWLYDTYIVSHKVELTPNLSNAF 407
Query: 366 CMANLYAGAELTEEAEEILRKMPEDNDNMSFESIM 400
+++A A + M ED + +S+ +++
Sbjct: 408 I--DMFAKCGDVGAASRLFSNM-EDKNVVSWNTMI 439
Score = 73.6 bits (179), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 57/266 (21%), Positives = 123/266 (46%), Gaps = 17/266 (6%)
Query: 190 MISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTS 249
M+ G+ ++G P +L LFR +++ + +T+ + A S+ E + R
Sbjct: 103 MMRGFLRAGKPTHALTLFRRVLRDRLAVDARTIVFAVKAAATSSSPTEAIHCVAFK-RGF 161
Query: 250 LKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFT 309
+ +++ AL+ +Y+ + A+++FD MADR++V W +I G+ G P+E ++F
Sbjct: 162 IGQSVLAGNALVHMYTSSMLLPDARKLFDEMADRDVVSWTTLIDGYARGGLPDEAWRVFC 221
Query: 310 ALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDF-YKIKPNFAHYWCMA 368
+ V S+ P+E+T + A + LL GR + +++ ++ N + +
Sbjct: 222 RM----VVAESVWPNEVTLVAAASAAGQMGLLGLGRTVHQCIVESGGRMSVNLEN--ALV 275
Query: 369 NLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMD 428
+++ A+E+ MP + W S++S G +E AK F ++
Sbjct: 276 DMFGKCGCVAAAKEVFDGMPIK------DVYSWTSMVSAYAKCGD---LENAAKLFKEIP 326
Query: 429 PQDFSRYQFLLNVYAVAGQWEDVARV 454
++ + ++ Y+ A ++ R+
Sbjct: 327 NRNVVSWSCMVAAYSHANMPDEAIRI 352
>gi|115452665|ref|NP_001049933.1| Os03g0314400 [Oryza sativa Japonica Group]
gi|108707812|gb|ABF95607.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
gi|113548404|dbj|BAF11847.1| Os03g0314400 [Oryza sativa Japonica Group]
gi|125586044|gb|EAZ26708.1| hypothetical protein OsJ_10614 [Oryza sativa Japonica Group]
Length = 648
Score = 266 bits (679), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 144/439 (32%), Positives = 233/439 (53%), Gaps = 9/439 (2%)
Query: 35 GSPDYTVLVFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLF 94
G D VF + F A+I + + + + + M G+ + V +
Sbjct: 214 GMVDEARKVFDVVERKDVFTWTAMISCFQRNGKFAEALALFSDMRGEGWPVDEAVMVCVV 273
Query: 95 GSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLI 154
+CA+ G MCHGLA + G+ L V N+LI+MY F + AR +F D
Sbjct: 274 AACARLEVTRNGEMCHGLAFRAGLGSRLNVQNALIHMYSSFLNVVAARRLFDSGQCLDQF 333
Query: 155 SWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSG 214
SWNS+++G++++G + A ELF +MP+++ VSW MISG ++ +L +F M G
Sbjct: 334 SWNSMIAGYLKNGSVKDAKELFTVMPDKDNVSWTTMISGCVQNDQSSEALTIFNNMQAQG 393
Query: 215 FRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQ 274
+ ++ T+ SV++AC + +G+S+H Y +IL T+LID+Y KC +E A
Sbjct: 394 IKPDEVTLVSVISACTNMSSLEQGKSMHEYIREHQYTITVILGTSLIDMYMKCGCLESAL 453
Query: 275 RVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICA 334
VFD+M +R CWNA+I+G ++G + + +F+ + + + A +P+EITF GV+ A
Sbjct: 454 EVFDTMEERGTPCWNAVIVGLAMNGLVMKSLDMFSEMESSSTA----TPNEITFTGVLSA 509
Query: 335 CVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNM 394
C A L+ EG+ +F+ M Y I PN HY CM +L A +EAE ++ MP M
Sbjct: 510 CRHAGLVEEGQHFFKLMQHKYHIIPNIRHYGCMVDLLGRAGYVKEAENLIESMP-----M 564
Query: 395 SFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARV 454
S + W +LL C G + ER+ + V++DP + L N+YA G W+ V +
Sbjct: 565 SPDVPAWGALLGSCWKHGDNEVGERVGRKLVNLDPHHDGFHTMLSNIYASEGMWQHVKDL 624
Query: 455 RELMKKRRMGRMPGCRLVD 473
R MK+ + ++PG +V+
Sbjct: 625 RGSMKQWHVPKIPGSSVVE 643
Score = 145 bits (365), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 114/448 (25%), Positives = 187/448 (41%), Gaps = 64/448 (14%)
Query: 2 KQLLQIQAHLITSGLFFNNSFWTINLLKHSADFGSP---DYTVLVFKCINNPGTFCVNAV 58
+ LLQI A + SGL + + +L ++ P +++ + ++ P F N V
Sbjct: 18 RHLLQIHAQFVASGLLADAFAASRLILFTTSTRLLPLPFHHSLRLLHVVHRPNAFSCNMV 77
Query: 59 IKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGV 118
+KA +P + Y M P+ YT L +CA +E G H A+++G
Sbjct: 78 LKAAREHGLPHLCLPLYASM---SAAPDCYTHTILAAACATRRAIEEGRQVHCHAVRHGF 134
Query: 119 DFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDI 178
L + N+L++MY G + AR +F D +SWN+I++ +V++ D+ A +F
Sbjct: 135 GRNLYLANALMSMYSACGCLGDARKVFDAGPVWDAVSWNTILAAYVQAEDVDQAVGVFAR 194
Query: 179 MPER-------------------------------NVVSWNIMISGYSKSGNPGCSLKLF 207
MPER +V +W MIS + ++G +L LF
Sbjct: 195 MPERGAAAVSSMVSLFGRRGMVDEARKVFDVVERKDVFTWTAMISCFQRNGKFAEALALF 254
Query: 208 REMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKC 267
+M G+ ++ M V+ AC R G HG R L + + ALI +YS
Sbjct: 255 SDMRGEGWPVDEAVMVCVVAACARLEVTRNGEMCHGLAFRAGLGSRLNVQNALIHMYSSF 314
Query: 268 QKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLF-----------TALVNGTV 316
V A+R+FDS + WN+MI G+ +G ++ +LF T +++G V
Sbjct: 315 LNVVAARRLFDSGQCLDQFSWNSMIAGYLKNGSVKDAKELFTVMPDKDNVSWTTMISGCV 374
Query: 317 ---------------AGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNF 361
I PDE+T + VI AC L +G K + I ++
Sbjct: 375 QNDQSSEALTIFNNMQAQGIKPDEVTLVSVISACTNMSSLEQG-KSMHEYIREHQYTITV 433
Query: 362 AHYWCMANLYAGAELTEEAEEILRKMPE 389
+ ++Y E A E+ M E
Sbjct: 434 ILGTSLIDMYMKCGCLESALEVFDTMEE 461
>gi|312190418|gb|ADQ43217.1| pentatricopeptide repeat [Eutrema parvulum]
Length = 616
Score = 266 bits (679), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 149/483 (30%), Positives = 247/483 (51%), Gaps = 11/483 (2%)
Query: 3 QLLQIQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAY 62
+L QI A ++ SGL + T L + S + F + P TF N +I+
Sbjct: 26 ELKQIHARMLKSGLLQDPYAMTKFLSFCLSSSFSSYAHDVFFNGFDRPDTFLWNLMIRGL 85
Query: 63 SNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFEL 122
S S PD+ ++ Y +M+ N+YTF L +C+ + H K G ++
Sbjct: 86 SCSDQPDRSLLLYHRMLCCSAPHNAYTFPFLLKACSNLSAFQETTQIHAHITKFGYGHDI 145
Query: 123 PVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPER 182
+NSLIN Y G A +F ++ D +SWNS++ G+V++G+M A LF MPE+
Sbjct: 146 YAVNSLINSYAVTGNFKHAHLLFDRIQEPDAVSWNSVIKGYVKAGEMDMALTLFRKMPEK 205
Query: 183 N-VVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSV 241
N +SW MISGY ++G +L+LF EM S ++ ++AS L+AC + +G+ +
Sbjct: 206 NNAISWTTMISGYVQAGMNKEALQLFHEMQNSNVPPDNVSLASALSACSQLGALEQGKWI 265
Query: 242 HGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKP 301
H Y +T + + +L LID+Y+KC ++E A VF +M +++ W A+I G+ HG
Sbjct: 266 HSYANKTRTRIDSVLCCVLIDMYAKCGEMEEALGVFKNMKTKSVQVWTALISGYAYHGLG 325
Query: 302 EEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNF 361
E I F + N + P+ ITF V+ AC L+ EG+ F + Y +KP
Sbjct: 326 REAISKFLEMQN-----MGVKPNAITFTAVLTACSYTGLVEEGKSVFNTIERDYNLKPTI 380
Query: 362 AHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLA 421
HY CM +L A L EA ++KMP + +++W SLL C+ + + E++
Sbjct: 381 EHYGCMVDLLGRAGLLNEANRFIQKMP-----LKPNAVIWGSLLKACQIHKNIELGEKIG 435
Query: 422 KSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLKEVVEKL 481
+ ++MD RY + N++A+ +W+ A R LM+++ + ++PGC + L+ +
Sbjct: 436 EILIEMDSNHGGRYVHMANIHAMGKKWDKAAETRRLMREQGVVKVPGCSAISLEGTTHEF 495
Query: 482 KVG 484
G
Sbjct: 496 LAG 498
>gi|225445484|ref|XP_002282063.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Vitis vinifera]
Length = 533
Score = 265 bits (678), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 161/491 (32%), Positives = 256/491 (52%), Gaps = 17/491 (3%)
Query: 1 MKQLLQIQAHLITSGLFFNNSFWTINLLKHSADFGSPDY---TVLVFKCINNPGTFCVNA 57
+ QL QI A+L+ S L + F LL +A +P + L+F+ ++ F N+
Sbjct: 24 LSQLKQIHANLLQSHLP-ESPFAIGQLLSLAATSNNPSFFSHACLIFQNLSLRNIFMYNS 82
Query: 58 VIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVER--GGMCHGLALK 115
+I+ Y S P + ++ YL M+ G + N+YTF L +C G + G + H +
Sbjct: 83 MIRGYVLSHSPTRAILCYLDMLNYGLLANNYTFPPLIKACTTLGSSSKLIGCLVHAHVVT 142
Query: 116 NGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHEL 175
G D + V+++LI Y M AR +F ++ RD++ W +++ G+ + GD+ A L
Sbjct: 143 FGFDEDPFVVSALIEFYSLNFDMGTARTLFDRIPNRDVVLWTAMIDGYGKMGDVEHARIL 202
Query: 176 FDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARF 235
F+ MPERN +SW+ +++ YS+ G+ L LFR M ++G N+ + SVLTAC
Sbjct: 203 FEDMPERNAISWSAVMAAYSRVGDFKEVLCLFRRMQEAGTMPNESVLVSVLTACAHLGAL 262
Query: 236 NEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGH 295
+G VH Y + + N IL TAL+D+YSKC VE A F + +++ WNAMI G
Sbjct: 263 AQGLWVHSYAKQCNFDSNPILATALVDMYSKCGCVESALSTFQGIPNKDAGAWNAMISGV 322
Query: 296 CIHGKPEEGIKLFTALV-NGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDF 354
++G + ++LF ++ NGT P E TF+ V+ AC A L+ EG K F QM
Sbjct: 323 AMNGDAWKSLELFNKMISNGT------QPTETTFVAVLTACTHARLVKEGLKLFEQMSSN 376
Query: 355 YKIKPNFAHYWCMANLYAGAELTEEAEE-ILRKMPEDNDNMSFESIMWVSLLSLCRFQGA 413
Y ++P HY C+ +L A A + EAE+ I KM ++ +W ++L CR G
Sbjct: 377 YGVEPQLEHYACLVDLMARAGMLAEAEKFIEEKMGGLGRG---DANVWGAMLGACRTYGN 433
Query: 414 VAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVD 473
+ + R+ K DM D + N+Y AG + RVR L+ + M + PGC +++
Sbjct: 434 IEVGNRVWKKLADMGVADCGTHVLSYNLYREAGWDMEAKRVRRLISEAGMKKKPGCSIIE 493
Query: 474 LKEVVEKLKVG 484
+ VE+ G
Sbjct: 494 VDGTVEEFLAG 504
>gi|223946989|gb|ACN27578.1| unknown [Zea mays]
gi|414586292|tpg|DAA36863.1| TPA: hypothetical protein ZEAMMB73_743648 [Zea mays]
Length = 545
Score = 265 bits (678), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 142/451 (31%), Positives = 236/451 (52%), Gaps = 17/451 (3%)
Query: 43 VFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIK-------NGF-MPNSYTFVSLF 94
VF I P NA+IKAY+ + + V Y++M++ GF + + +T+ L
Sbjct: 64 VFAQIPAPNLHLHNAMIKAYAQNHLHRDAVEVYVRMLRCLPHPSTAGFSVGDRFTYPFLL 123
Query: 95 GSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLI 154
+C G H ++G + V NSLI MY G + AR F M +D++
Sbjct: 124 KACGALAASRLGRQVHAHVARSGCESHAVVQNSLIEMYTRCGDLSTARKAFDGMREKDVV 183
Query: 155 SWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSG 214
SWN+++S H R G M A ELF MP++ VVSW ++SGY+ G+ ++++FR M G
Sbjct: 184 SWNTLISAHARMGQMRRARELFYSMPDKTVVSWTALVSGYTAVGDFTGAVEVFRLMQMEG 243
Query: 215 FRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQ 274
F +D ++ +VL AC + GR ++ Y + + + + AL+++Y+KC +E A
Sbjct: 244 FEPDDVSIVAVLPACAQLGALELGRWIYAYCSKHGMLGKVYICNALMEMYAKCGCIEEAL 303
Query: 275 RVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICA 334
++F M++++++ W+ I G HG+ E ++LF + G + P+ ITF+G++ A
Sbjct: 304 QLFHGMSEKDVISWSTAIGGLAAHGRAREAVRLFEVMDR----EGRVMPNGITFVGLLSA 359
Query: 335 CVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNM 394
C A L+ EG +Y QM + Y ++P HY C+ +L + + A + +R MP D
Sbjct: 360 CSHAGLVDEGLRYLDQMKEDYGVEPGVEHYGCVVDLLGRSGRIQRALDTIRGMPVPPDGK 419
Query: 395 SFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARV 454
+W SLLS CR G V A+ V+++P D L NVY AG+W +VA
Sbjct: 420 -----IWGSLLSACRSHGDVETAVVAAERLVELEPGDVGNLVMLANVYGAAGRWGEVAST 474
Query: 455 RELMKKRRMGRMPGCRLVDLKEVVEKLKVGH 485
R+ ++ R + PGC ++++ VV + G
Sbjct: 475 RKEIRSRSTRKTPGCSMIEVDNVVREFVAGQ 505
>gi|125543615|gb|EAY89754.1| hypothetical protein OsI_11297 [Oryza sativa Indica Group]
Length = 648
Score = 265 bits (677), Expect = 4e-68, Method: Compositional matrix adjust.
Identities = 144/439 (32%), Positives = 233/439 (53%), Gaps = 9/439 (2%)
Query: 35 GSPDYTVLVFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLF 94
G D VF + F A+I + + + + + M G+ + V +
Sbjct: 214 GMVDEARKVFDGVERKDVFTWTAMISCFQRNGKFAEALALFSDMRGEGWPVDEAVMVCVV 273
Query: 95 GSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLI 154
+CA+ G MCHGLA + G+ L V N+LI+MY F + AR +F D
Sbjct: 274 AACARLEVTRNGEMCHGLAFRAGLGSRLNVQNALIHMYSSFLNVVAARRLFDSGQCLDQF 333
Query: 155 SWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSG 214
SWNS+++G++++G + A ELF +MP+++ VSW MISG ++ +L +F M G
Sbjct: 334 SWNSMIAGYLKNGSVKDAKELFTVMPDKDNVSWTTMISGCVQNDQSSEALTIFNNMQAQG 393
Query: 215 FRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQ 274
+ ++ T+ SV++AC + +G+S+H Y +IL T+LID+Y KC +E A
Sbjct: 394 IKPDEVTLVSVISACTNMSSLEQGKSMHEYIREHQYTITVILGTSLIDMYMKCGCLESAL 453
Query: 275 RVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICA 334
VFD+M +R CWNA+I+G ++G + + +F+ + + + A +P+EITF GV+ A
Sbjct: 454 EVFDTMEERGTPCWNAVIVGLAMNGLVMKSLDMFSEMESSSTA----TPNEITFTGVLSA 509
Query: 335 CVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNM 394
C A L+ EG+ +F+ M Y I PN HY CM +L A +EAE ++ MP M
Sbjct: 510 CRHAGLVEEGQHFFKLMQHKYHIIPNIRHYGCMVDLLGRAGYVKEAENLIESMP-----M 564
Query: 395 SFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARV 454
S + W +LL C G + ER+ + V++DP + L N+YA G W+ V +
Sbjct: 565 SPDVPAWGALLGSCWKHGDNEVGERVGRKLVNLDPHHDGFHTMLSNIYASEGMWQHVKDL 624
Query: 455 RELMKKRRMGRMPGCRLVD 473
R MK+ + ++PG +V+
Sbjct: 625 RGSMKQWHVPKIPGSSVVE 643
Score = 144 bits (364), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 114/448 (25%), Positives = 187/448 (41%), Gaps = 64/448 (14%)
Query: 2 KQLLQIQAHLITSGLFFNNSFWTINLLKHSADFGSP---DYTVLVFKCINNPGTFCVNAV 58
+ LLQI A + SGL + + +L ++ P +++ + ++ P F N V
Sbjct: 18 RHLLQIHAQFVASGLLADAFAASRLILFTTSTRLLPLPFHHSLRLLHVVHRPNAFSCNMV 77
Query: 59 IKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGV 118
+KA +P + Y M P+ YT L +CA +E G H A+++G
Sbjct: 78 LKAAREHGLPHLCLPLYASM---SAAPDCYTHTILAAACATRRAIEEGRQVHCHAVRHGF 134
Query: 119 DFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDI 178
L + N+L++MY G + AR +F D +SWN+I++ +V++ D+ A +F
Sbjct: 135 GRNLYLANALMSMYSACGCLGDARKVFDAGPVWDAVSWNTILAAYVQAEDVDQAVGVFAR 194
Query: 179 MPER-------------------------------NVVSWNIMISGYSKSGNPGCSLKLF 207
MPER +V +W MIS + ++G +L LF
Sbjct: 195 MPERGAAAVSSMVSLFGRRGMVDEARKVFDGVERKDVFTWTAMISCFQRNGKFAEALALF 254
Query: 208 REMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKC 267
+M G+ ++ M V+ AC R G HG R L + + ALI +YS
Sbjct: 255 SDMRGEGWPVDEAVMVCVVAACARLEVTRNGEMCHGLAFRAGLGSRLNVQNALIHMYSSF 314
Query: 268 QKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLF-----------TALVNGTV 316
V A+R+FDS + WN+MI G+ +G ++ +LF T +++G V
Sbjct: 315 LNVVAARRLFDSGQCLDQFSWNSMIAGYLKNGSVKDAKELFTVMPDKDNVSWTTMISGCV 374
Query: 317 ---------------AGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNF 361
I PDE+T + VI AC L +G K + I ++
Sbjct: 375 QNDQSSEALTIFNNMQAQGIKPDEVTLVSVISACTNMSSLEQG-KSMHEYIREHQYTITV 433
Query: 362 AHYWCMANLYAGAELTEEAEEILRKMPE 389
+ ++Y E A E+ M E
Sbjct: 434 ILGTSLIDMYMKCGCLESALEVFDTMEE 461
>gi|225457243|ref|XP_002281020.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Vitis vinifera]
Length = 580
Score = 265 bits (677), Expect = 4e-68, Method: Compositional matrix adjust.
Identities = 154/483 (31%), Positives = 241/483 (49%), Gaps = 44/483 (9%)
Query: 4 LLQIQAHLITSGLFFNNSFWTINLLKHSADF--GSPDYTVLVFKCINNPGTFCVNAVIKA 61
L IQAH++ + L ++F T L++ SA G Y +F C ++P F N +I+
Sbjct: 23 LKAIQAHMVRANLT-QDTFLTSKLIESSAVTLSGHVAYAHRIFSCTHHPNLFMWNTIIRG 81
Query: 62 YSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFE 121
YS S P + Y M G PNSYTF + +C K + G H +K G+DFE
Sbjct: 82 YSISDSPITAIALYRDMFLCGISPNSYTFGFVLKACCKLLRLCEGQELHSQIVKVGLDFE 141
Query: 122 LPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPE 181
P++N LI +Y G MD A MF D MPE
Sbjct: 142 TPLVNGLIKLYAACGCMDYACVMF-------------------------------DEMPE 170
Query: 182 RNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSV 241
+ SW+ M+SGY+++G +LKLFREM + T+ASV+ CG + G+ V
Sbjct: 171 PDSASWSTMVSGYAQNGQAVEALKLFREMQAENVSSDAFTLASVVGVCGDLGALDLGKWV 230
Query: 242 HGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKP 301
H Y + +K +++L TAL+ +YSKC ++ A +VF MA+R++ W+ MI G+ IHG
Sbjct: 231 HSYMDKEGVKIDVVLGTALVGMYSKCGSLDNALKVFQGMAERDVTAWSTMIAGYAIHGHG 290
Query: 302 EEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNF 361
E+ ++LF A+ P+ +TF V+ AC + L+ +G + F M YKI P
Sbjct: 291 EKALQLFDAMKRSKTI-----PNCVTFTSVLSACSHSGLVEKGHQIFETMWTEYKITPQI 345
Query: 362 AHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLA 421
HY CM +L+ A + A + ++ MP + + ++W +LL C+ G + E ++
Sbjct: 346 KHYGCMVDLFCRAGMVGHAHKFIQTMPIEPN-----VVLWRTLLGACKTHGYKDLGEHIS 400
Query: 422 KSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLKEVVEKL 481
+ + +DP Y + NVYA G+W V +VR LMK + + G +++ +V K
Sbjct: 401 RKILKLDPSSPENYVLVSNVYASLGRWSSVCQVRSLMKDKAPKKQHGWSSIEINFMVHKF 460
Query: 482 KVG 484
+G
Sbjct: 461 IMG 463
>gi|225469326|ref|XP_002268072.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g38010-like [Vitis vinifera]
Length = 590
Score = 265 bits (677), Expect = 4e-68, Method: Compositional matrix adjust.
Identities = 169/556 (30%), Positives = 265/556 (47%), Gaps = 85/556 (15%)
Query: 1 MKQLLQIQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNP----GTFCVN 56
++ L QI AHLI SGL + + G DY F +N GT N
Sbjct: 18 IRSLKQIHAHLIASGLLHDEFVLSKVSEFFGKHIGFVDYA---FDFLNQTDLHVGTLPYN 74
Query: 57 AVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKN 116
+I AY++SC P + Y +++ NGF+P+ YTF + +C K V+ G HG+A+K
Sbjct: 75 TLIAAYASSCTPKAAFLVYGRIVGNGFVPDMYTFPVVLKACTKFLGVQEGEQVHGVAVKM 134
Query: 117 GVDFELPVMNSL-------------------------------INMYGCFGAMDCARNMF 145
G +L V NSL I+ Y G D A N+F
Sbjct: 135 GFLCDLYVQNSLLHFYSVCGKWGGAGRVFDEMLVRDVVSWTGLISGYVRTGLFDEAINLF 194
Query: 146 VQMS--PR----------------------------------DLISWNSIVSGHVRSGDM 169
++M P L+ N++V +V+ +
Sbjct: 195 LKMDVVPNVATFVSVLVACGRMGYLSMGKGVHGLVYKRAFGIGLVVGNALVDMYVKCECL 254
Query: 170 SAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTAC 229
A +LFD +P+R++VSW +ISG + P SL+LF +M SG + + SVL+AC
Sbjct: 255 CEARKLFDELPDRDIVSWTSIISGLVQCKQPKDSLELFYDMQISGVEPDRIILTSVLSAC 314
Query: 230 GRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWN 289
+ GR V Y R ++ +I + TAL+D+Y+KC +E+A +F+ + +RN+ WN
Sbjct: 315 ASLGALDYGRWVQEYIERQGIEWDIHIGTALVDMYAKCGCIEMALHIFNGIPNRNIFTWN 374
Query: 290 AMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFR 349
A++ G +HG E +K F ++ G I P+E+TF+ ++ AC + L+ EGR YF
Sbjct: 375 ALLGGLAMHGHGHEALKHFELMI-----GAGIRPNEVTFLAILTACCHSGLVAEGRSYFY 429
Query: 350 QMIDF-YKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLC 408
QMI + P HY CM +L A L +EA + +R MP D ++W +LLS C
Sbjct: 430 QMISQPFNFSPRLEHYGCMIDLLCRAGLLDEAYKFIRNMPLPPD-----VLIWGALLSAC 484
Query: 409 RFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPG 468
+ G V + + + +++ QD Y L N+YA +W+DV RVR LMK + + + PG
Sbjct: 485 KANGNVELSQEILSHLLELKSQDSGVYVLLSNIYATNERWDDVTRVRRLMKDKGIRKFPG 544
Query: 469 CRLVDLKEVVEKLKVG 484
++++ + VG
Sbjct: 545 SSVIEVDGEAHEFLVG 560
>gi|356522492|ref|XP_003529880.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At5g08510-like [Glycine max]
Length = 474
Score = 265 bits (677), Expect = 4e-68, Method: Compositional matrix adjust.
Identities = 150/446 (33%), Positives = 238/446 (53%), Gaps = 15/446 (3%)
Query: 42 LVFKCINNPGTFCVNAVIKAYSNSCVPDQGVVF--YLQMIKNGFMPNSYTFVSLFGSCAK 99
+V + P F N +I+AYS S Q F Y Q+ +GF+PN +TF LF +C
Sbjct: 1 MVLHHSSKPTLFLYNKLIQAYS-SHPQHQHRCFSLYSQIRLHGFLPNQHTFNFLFSACTS 59
Query: 100 TGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSI 159
G M H +K+G + +L +L++MY GA++ AR +F +M R + WN++
Sbjct: 60 LSSSSLGQMLHTHFIKSGFEPDLFAATALLDMYAKVGALELARKLFDEMPVRGVPRWNAM 119
Query: 160 VSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREM-MKSGFRGN 218
++G R GDM A ELF MP RNVV W MISGYS + +L LF M + G N
Sbjct: 120 MAGLARFGDMDGALELFXSMPSRNVVPWTTMISGYSWNKQYDKALGLFLGMEQEKGIMPN 179
Query: 219 DKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFD 278
T+ S+L AC G+ V Y + N A++++Y KC K++ A RVF+
Sbjct: 180 AVTLVSILPACANLXALEIGQRVEAYARKNGFFKNXYASNAVLEMYVKCGKIDAAWRVFN 239
Query: 279 SMAD-RNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVR 337
+ RNL WN+M++G +HG+ + ++L+ ++ G SPD++TF+G++ AC +
Sbjct: 240 EIGSLRNLCSWNSMVVGLAVHGECCKALELYDQML-----GEGTSPDDVTFVGLLLACTQ 294
Query: 338 AELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFE 397
++ +GR F+ + I P HY CM +L A EA E+++ M +M +
Sbjct: 295 GGMVKKGRHIFKSKTTSFYIIPKLEHYGCMVDLLGRAGQLREAYEVIQSM-----SMKPD 349
Query: 398 SIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVREL 457
S++W +LL C F G V + E A+S ++P + Y L N+YA AGQW+ VA++R++
Sbjct: 350 SVIWGALLGACSFHGNVELAEIAAESLFVLEPWNPGNYVILSNIYASAGQWDGVAKLRKV 409
Query: 458 MKKRRMGRMPGCRLVDLKEVVEKLKV 483
MK ++ + G ++ + K V
Sbjct: 410 MKGSKITKSAGHSFIEEGAQLHKFIV 435
>gi|356538057|ref|XP_003537521.1| PREDICTED: pentatricopeptide repeat-containing protein At4g14050,
mitochondrial-like [Glycine max]
Length = 611
Score = 265 bits (676), Expect = 6e-68, Method: Compositional matrix adjust.
Identities = 147/440 (33%), Positives = 238/440 (54%), Gaps = 24/440 (5%)
Query: 68 PDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGC--VERGGMCHGLALKNGVDFELPVM 125
P + + ++ GF P+ + F SL +CA G V++G H + + V
Sbjct: 85 PHRALSISRSLLSTGFHPDHFVFASLVKACANLGVLHVKQGKQVHARFFLSPFSDDDVVK 144
Query: 126 NSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVV 185
+SLI+MY FG D R +F +S + ISW +++SG+ RSG A LF P RN+
Sbjct: 145 SSLIDMYAKFGLPDYGRAVFDSISSLNSISWTTMISGYARSGRKFEAFRLFRQTPYRNLF 204
Query: 186 SWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDK-TMASVLTACGRSARFNEGRSVHGY 244
+W +ISG +SGN + LF EM G D ++SV+ AC A + G+ +HG
Sbjct: 205 AWTALISGLVQSGNGVDAFHLFVEMRHEGISVTDPLVLSSVVGACANLALWELGKQMHGV 264
Query: 245 TVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEG 304
+ + + + ALID+Y+KC + A+ +F M +++V W ++I+G HG+ EE
Sbjct: 265 VITLGYESCLFISNALIDMYAKCSDLVAAKYIFCEMCRKDVVSWTSIIVGTAQHGQAEEA 324
Query: 305 IKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHY 364
+ L+ +V +AG + P+E+TF+G+I AC A L+++GR FR M++ + I P+ HY
Sbjct: 325 LALYDEMV---LAG--VKPNEVTFVGLIHACSHAGLVSKGRTLFRTMVEDHGISPSLQHY 379
Query: 365 WCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSF 424
C+ +L++ + +EAE ++R MP + D + W +LLS C+ G M R+A
Sbjct: 380 TCLLDLFSRSGHLDEAENLIRTMPVNPDEPT-----WAALLSSCKRHGNTQMAVRIADHL 434
Query: 425 VDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLKEVVEKLKVG 484
+++ P+D S Y L N+YA AG WEDV++VR+LM + PG +DL K
Sbjct: 435 LNLKPEDPSSYILLSNIYAGAGMWEDVSKVRKLMMTLEAKKAPGYSCIDLG------KGS 488
Query: 485 HFWRGG-----MKEEVNKMM 499
H + G M++E+ +M
Sbjct: 489 HVFYAGETSHPMRDEIIGLM 508
Score = 85.9 bits (211), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 55/224 (24%), Positives = 100/224 (44%), Gaps = 44/224 (19%)
Query: 110 HGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDM 169
H +K G++ P+ N+L+N YG + G +
Sbjct: 26 HAQIIKAGLNQHEPIPNTLLNAYG-------------------------------KCGLI 54
Query: 170 SAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTAC 229
A +LFD +P R+ V+W +++ + S P +L + R ++ +GF + AS++ AC
Sbjct: 55 QDALQLFDALPRRDPVAWASLLTACNLSNRPHRALSISRSLLSTGFHPDHFVFASLVKAC 114
Query: 230 GRSA--RFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVC 287
+G+ VH + + ++ ++LID+Y+K + + VFDS++ N +
Sbjct: 115 ANLGVLHVKQGKQVHARFFLSPFSDDDVVKSSLIDMYAKFGLPDYGRAVFDSISSLNSIS 174
Query: 288 WNAMILGHCIHGKPEEGIKLF-----------TALVNGTVAGGS 320
W MI G+ G+ E +LF TAL++G V G+
Sbjct: 175 WTTMISGYARSGRKFEAFRLFRQTPYRNLFAWTALISGLVQSGN 218
Score = 43.5 bits (101), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 23/122 (18%), Positives = 56/122 (45%), Gaps = 6/122 (4%)
Query: 220 KTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDS 279
+++ S L + R + + +H ++ L + + L++ Y KC ++ A ++FD+
Sbjct: 5 QSLQSQLCSAARQSPL-LAKKLHAQIIKAGLNQHEPIPNTLLNAYGKCGLIQDALQLFDA 63
Query: 280 MADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAE 339
+ R+ V W +++ + +P + + +L++ PD F ++ AC
Sbjct: 64 LPRRDPVAWASLLTACNLSNRPHRALSISRSLLS-----TGFHPDHFVFASLVKACANLG 118
Query: 340 LL 341
+L
Sbjct: 119 VL 120
>gi|414883627|tpg|DAA59641.1| TPA: hypothetical protein ZEAMMB73_113196 [Zea mays]
Length = 637
Score = 264 bits (675), Expect = 7e-68, Method: Compositional matrix adjust.
Identities = 163/529 (30%), Positives = 269/529 (50%), Gaps = 41/529 (7%)
Query: 1 MKQLLQIQAHLITSGLFFNNSFWTI-----NLLKHSADFGSPDYTVLVFKCINNPGTFCV 55
+ +LQ A L GL + + L +AD S Y +L+F+C N F
Sbjct: 39 LYHVLQAHARLAVLGLATARALPQLLAALPRLTLAAADV-SHSYPLLLFRCSNCTSAFAS 97
Query: 56 NAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFV------SLFGSCAKTGCVER---G 106
N +++ + P +F +N P+S+TF+ L A G + G
Sbjct: 98 NHLLRVLPH---PLPLRLFPRLPRRN---PHSFTFLLASLSNHLDTEPAAAGSIASRFMG 151
Query: 107 GMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMS-PRDLISWNSIVSGHVR 165
H LA+K G +L V N+ I+ YG G + R +F ++ RD+++WN++++G+VR
Sbjct: 152 THVHALAVKAGAAGDLYVRNAQIHFYGVCGDVAAMRKVFDELPIVRDVVTWNAVLAGYVR 211
Query: 166 SGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASV 225
+G + A E+FD MP R+ VSW+ +I GY K G P +L +F+ M+ G + N+ + +
Sbjct: 212 AGMVGVAREVFDGMPVRDEVSWSTVIGGYVKEGEPEVALGVFKNMVAQGVKANEAAIVTA 271
Query: 226 LTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNL 285
L+A + +G+ VH R + ++ L ALID+YSKC V A+ VFD+M R++
Sbjct: 272 LSAAAQLGLLEQGKFVHEVVKRVGMTMSVNLGAALIDMYSKCGSVAAAKEVFDAMPRRDV 331
Query: 286 VCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGR 345
WN+MI G HG + ++LF V+ P ITF+GV+ AC R L+ EGR
Sbjct: 332 FAWNSMICGLATHGLGHDAVQLFEKFVS-----EGFCPTSITFVGVLNACSRTGLVDEGR 386
Query: 346 KYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLL 405
+YF+ M + Y I+ HY CM +L + A L +EA E++ M + + ++W ++L
Sbjct: 387 RYFKLMAEKYDIESEMEHYGCMVDLLSRAGLVQEAVELIEGM-----RIPPDPVLWGTIL 441
Query: 406 SLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGR 465
S C+ G V + + +++DP Y L ++YA A +W++V +VR+LM R +
Sbjct: 442 SACKRHGLVDLGITVGNKLIELDPAHDGYYVLLASIYAKAKKWDEVRKVRKLMSNRGTSK 501
Query: 466 MPGCRLVDLKEVVEKLKVGHFWRGGMKEEVNKMMECRQSRSLATVSKQL 514
G L++ +V K VG ++N R L T++++L
Sbjct: 502 SAGWSLMEAHGIVHKFLVG---------DMNHKDSARIYNMLCTINRRL 541
>gi|359486044|ref|XP_002269662.2| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g49142-like [Vitis vinifera]
Length = 689
Score = 264 bits (675), Expect = 8e-68, Method: Compositional matrix adjust.
Identities = 153/476 (32%), Positives = 252/476 (52%), Gaps = 18/476 (3%)
Query: 6 QIQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSN- 64
Q A ++ GL N+F ++ A G D V+VF I+NP + N++I+AY+
Sbjct: 98 QAHAQIVLHGLQ-PNAFLAAKMVAMYASSGDLDSAVVVFDRIDNPSSLLYNSIIRAYTRH 156
Query: 65 --SCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFEL 122
+ Y +M G + +++T + SCA V G HG L+ G++ +
Sbjct: 157 GXXXXXXXXLEAYARMHFLGLLGDNFTLPFVLKSCADLSRVCMGRCVHGQGLRVGLEGDF 216
Query: 123 PVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPER 182
V SLI+MY G + AR +F +M RD+ SWN++++G+++ G++ A +LF+ M R
Sbjct: 217 YVGASLIDMYVKCGVIGDARKLFDKMIVRDMASWNALIAGYMKEGEIGVAEDLFERMEHR 276
Query: 183 NVVSWNIMISGYSKSGNPGCSLKLFREMMKSG--FRGNDKTMASVLTACGRSARFNEGRS 240
N+VSW MISGY+++G +L LF EM++ G + N T+ SVL AC +SA GR
Sbjct: 277 NIVSWTAMISGYTQNGFAEQALGLFDEMLQDGSEMKPNWVTIVSVLPACAQSAALERGRR 336
Query: 241 VHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMAD--RNLVCWNAMILGHCIH 298
+H + L N + TAL +Y+KC + A+ FD +A +NL+ WN MI + H
Sbjct: 337 IHDFANGIGLHLNSSVQTALAGMYAKCYSLVEARCCFDMIAQNGKNLIAWNTMITAYASH 396
Query: 299 GKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIK 358
G E + +F ++ V PD +TF+G++ C + L+ G +F M + ++
Sbjct: 397 GCGVEAVSIFENMLRAGV-----QPDAVTFMGLLSGCSHSGLIDAGLNHFNDMGTIHSVE 451
Query: 359 PNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVE 418
P HY C+ +L A EA+E++ +MP M +W +LL+ CR + + E
Sbjct: 452 PRVEHYACVVDLLGRAGRLVEAKELISQMP-----MQAGPSVWGALLAACRSHRNLEIAE 506
Query: 419 RLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDL 474
A+ ++P + Y L N+YA AG WE+V ++R L+K + M + PGC +++
Sbjct: 507 LAARRLFVLEPDNSGNYVLLSNLYAEAGMWEEVKKLRALLKYQGMKKSPGCSWIEI 562
>gi|15241651|ref|NP_196468.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75171895|sp|Q9FNN7.1|PP371_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g08510
gi|9759345|dbj|BAB10000.1| unnamed protein product [Arabidopsis thaliana]
gi|50897238|gb|AAT85758.1| At5g08510 [Arabidopsis thaliana]
gi|332003930|gb|AED91313.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 511
Score = 264 bits (675), Expect = 8e-68, Method: Compositional matrix adjust.
Identities = 153/470 (32%), Positives = 249/470 (52%), Gaps = 17/470 (3%)
Query: 1 MKQLLQIQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIK 60
M + Q+ AH + +G+ T +LL+ + Y +F N TF N +I+
Sbjct: 1 MNGIKQLHAHCLRTGVD-----ETKDLLQRLLLIPNLVYARKLFDHHQNSCTFLYNKLIQ 55
Query: 61 AYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDF 120
AY P + +V Y + +G P+ +TF +F + A + H ++G +
Sbjct: 56 AYYVHHQPHESIVLYNLLSFDGLRPSHHTFNFIFAASASFSSARPLRLLHSQFFRSGFES 115
Query: 121 ELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMP 180
+ +LI Y GA+ CAR +F +MS RD+ WN++++G+ R GDM AA ELFD MP
Sbjct: 116 DSFCCTTLITAYAKLGALCCARRVFDEMSKRDVPVWNAMITGYQRRGDMKAAMELFDSMP 175
Query: 181 ERNVVSWNIMISGYSKSGNPGCSLKLFREMMKS-GFRGNDKTMASVLTACGRSARFNEGR 239
+NV SW +ISG+S++GN +LK+F M K + N T+ SVL AC GR
Sbjct: 176 RKNVTSWTTVISGFSQNGNYSEALKMFLCMEKDKSVKPNHITVVSVLPACANLGELEIGR 235
Query: 240 SVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMAD-RNLVCWNAMILGHCIH 298
+ GY NI + A I++YSKC ++VA+R+F+ + + RNL WN+MI H
Sbjct: 236 RLEGYARENGFFDNIYVCNATIEMYSKCGMIDVAKRLFEELGNQRNLCSWNSMIGSLATH 295
Query: 299 GKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIK 358
GK +E + LF ++ PD +TF+G++ ACV ++ +G++ F+ M + +KI
Sbjct: 296 GKHDEALTLFAQMLR-----EGEKPDAVTFVGLLLACVHGGMVVKGQELFKSMEEVHKIS 350
Query: 359 PNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVE 418
P HY CM +L +EA ++++ MP M ++++W +LL C F G V + E
Sbjct: 351 PKLEHYGCMIDLLGRVGKLQEAYDLIKTMP-----MKPDAVVWGTLLGACSFHGNVEIAE 405
Query: 419 RLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPG 468
+++ ++P + + N+YA +W+ V R+R+LMKK M + G
Sbjct: 406 IASEALFKLEPTNPGNCVIMSNIYAANEKWDGVLRMRKLMKKETMTKAAG 455
>gi|242032827|ref|XP_002463808.1| hypothetical protein SORBIDRAFT_01g006560 [Sorghum bicolor]
gi|241917662|gb|EER90806.1| hypothetical protein SORBIDRAFT_01g006560 [Sorghum bicolor]
Length = 803
Score = 264 bits (675), Expect = 8e-68, Method: Compositional matrix adjust.
Identities = 140/448 (31%), Positives = 245/448 (54%), Gaps = 17/448 (3%)
Query: 25 INLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFM 84
++L H G D + +F+ + NA+I Y+ + + D + F+ +M+ M
Sbjct: 236 VSLYTHQ---GRMDLALSMFENMEERSIVSWNAIIAGYNQNGLDDMALKFFSRMLTASSM 292
Query: 85 -PNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARN 143
P+ +T S+ +CA ++ G H L+ G+ + +MN+LI+ Y G+++ AR
Sbjct: 293 EPDEFTVTSVLSACANLRMLKMGKQMHSYILRTGMPYSSQIMNALISTYAKSGSVETARR 352
Query: 144 MFVQMSPRDL--ISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPG 201
+ + DL IS+ +++ G+V+ GD A E+FD+M R+V++W MI GY ++G
Sbjct: 353 IMDKAVVADLNVISFTALLEGYVKLGDTKQAREVFDVMNNRDVIAWTAMIVGYEQNGQND 412
Query: 202 CSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALI 261
+++LFR M++SG N T+A+VL+AC A G+ +H +R+ + ++ + A+I
Sbjct: 413 EAMELFRSMIRSGPEPNSHTLAAVLSACASLAYLGYGKQIHCRAIRSLQEQSVSVSNAII 472
Query: 262 DLYSKCQKVEVAQRVFDSMADRN-LVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGS 320
+Y++ V +A+RVFD + R V W +MI+ HG E+ I LF ++
Sbjct: 473 TVYARSGSVPLARRVFDQICWRKETVTWTSMIVALAQHGLGEQAIVLFEEMLR-----VG 527
Query: 321 ISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEA 380
+ PD +T+IGV AC A + +G++Y+ QM++ + I P +HY CM +L A A L EA
Sbjct: 528 VKPDRVTYIGVFSACTHAGFIDKGKRYYEQMLNEHGIVPEMSHYACMVDLLARAGLLTEA 587
Query: 381 EEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLN 440
E +++MP D +++W SLL+ CR + + E A+ + +DP + Y L N
Sbjct: 588 HEFIQRMPVAPD-----TVVWGSLLAACRVRKNADLAELAAEKLLSIDPDNSGAYSALAN 642
Query: 441 VYAVAGQWEDVARVRELMKKRRMGRMPG 468
VY+ G+W D AR+ +L K + + + G
Sbjct: 643 VYSACGRWNDAARIWKLRKDKAVKKETG 670
Score = 152 bits (383), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 92/310 (29%), Positives = 150/310 (48%), Gaps = 39/310 (12%)
Query: 71 GVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLIN 130
V +L M+ G P+ + ++ SCA T G H +K G+ +PV NS++
Sbjct: 147 AVKTFLDMVGEGLAPSQFMLTNVLSSCAATEARGIGRKVHSFVIKLGLSSCVPVANSVLY 206
Query: 131 MYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIM 190
MYG G + AR +F +M R SWN++VS + G M A +F+ M ER++VSWN +
Sbjct: 207 MYGKCGDAETARAVFERMKVRSESSWNAMVSLYTHQGRMDLALSMFENMEERSIVSWNAI 266
Query: 191 ISGYSKSGNPGCSLKLFREMMK-SGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTS 249
I+GY+++G +LK F M+ S ++ T+ SVL+AC G+ +H Y +RT
Sbjct: 267 IAGYNQNGLDDMALKFFSRMLTASSMEPDEFTVTSVLSACANLRMLKMGKQMHSYILRTG 326
Query: 250 LKPNIILDTALIDLYSKCQKVEVAQR---------------------------------V 276
+ + + ALI Y+K VE A+R V
Sbjct: 327 MPYSSQIMNALISTYAKSGSVETARRIMDKAVVADLNVISFTALLEGYVKLGDTKQAREV 386
Query: 277 FDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACV 336
FD M +R+++ W AMI+G+ +G+ +E ++LF +++ P+ T V+ AC
Sbjct: 387 FDVMNNRDVIAWTAMIVGYEQNGQNDEAMELFRSMIR-----SGPEPNSHTLAAVLSACA 441
Query: 337 RAELLTEGRK 346
L G++
Sbjct: 442 SLAYLGYGKQ 451
Score = 117 bits (293), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 73/281 (25%), Positives = 136/281 (48%), Gaps = 47/281 (16%)
Query: 106 GGMCHGLALKNGVDFELPVMNSLINMY-------GCFGAMDCARNMF--VQMSPRDLISW 156
G H A+K G+ + N+L++ Y GCF AR +F + + R+ +W
Sbjct: 44 GRAIHAHAVKAGLLVSAYLCNNLLSYYARAGVGRGCFHE---ARRLFDDIPYARRNAFTW 100
Query: 157 NSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFR 216
NS++S + +SG ++ A +F MPER+ VSW +M+ G +++G ++K F +M+ G
Sbjct: 101 NSLLSMYAKSGRLADARVVFAQMPERDAVSWTVMVVGLNRAGRFWDAVKTFLDMVGEGLA 160
Query: 217 GNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRV 276
+ + +VL++C + GR VH + ++ L + + +++ +Y KC E A+ V
Sbjct: 161 PSQFMLTNVLSSCAATEARGIGRKVHSFVIKLGLSSCVPVANSVLYMYGKCGDAETARAV 220
Query: 277 -------------------------------FDSMADRNLVCWNAMILGHCIHGKPEEGI 305
F++M +R++V WNA+I G+ +G + +
Sbjct: 221 FERMKVRSESSWNAMVSLYTHQGRMDLALSMFENMEERSIVSWNAIIAGYNQNGLDDMAL 280
Query: 306 KLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRK 346
K F+ ++ + S+ PDE T V+ AC +L G++
Sbjct: 281 KFFSRMLTAS----SMEPDEFTVTSVLSACANLRMLKMGKQ 317
>gi|414883628|tpg|DAA59642.1| TPA: hypothetical protein ZEAMMB73_113196, partial [Zea mays]
Length = 635
Score = 264 bits (675), Expect = 8e-68, Method: Compositional matrix adjust.
Identities = 163/529 (30%), Positives = 269/529 (50%), Gaps = 41/529 (7%)
Query: 1 MKQLLQIQAHLITSGLFFNNSFWTI-----NLLKHSADFGSPDYTVLVFKCINNPGTFCV 55
+ +LQ A L GL + + L +AD S Y +L+F+C N F
Sbjct: 39 LYHVLQAHARLAVLGLATARALPQLLAALPRLTLAAADV-SHSYPLLLFRCSNCTSAFAS 97
Query: 56 NAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFV------SLFGSCAKTGCVER---G 106
N +++ + P +F +N P+S+TF+ L A G + G
Sbjct: 98 NHLLRVLPH---PLPLRLFPRLPRRN---PHSFTFLLASLSNHLDTEPAAAGSIASRFMG 151
Query: 107 GMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMS-PRDLISWNSIVSGHVR 165
H LA+K G +L V N+ I+ YG G + R +F ++ RD+++WN++++G+VR
Sbjct: 152 THVHALAVKAGAAGDLYVRNAQIHFYGVCGDVAAMRKVFDELPIVRDVVTWNAVLAGYVR 211
Query: 166 SGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASV 225
+G + A E+FD MP R+ VSW+ +I GY K G P +L +F+ M+ G + N+ + +
Sbjct: 212 AGMVGVAREVFDGMPVRDEVSWSTVIGGYVKEGEPEVALGVFKNMVAQGVKANEAAIVTA 271
Query: 226 LTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNL 285
L+A + +G+ VH R + ++ L ALID+YSKC V A+ VFD+M R++
Sbjct: 272 LSAAAQLGLLEQGKFVHEVVKRVGMTMSVNLGAALIDMYSKCGSVAAAKEVFDAMPRRDV 331
Query: 286 VCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGR 345
WN+MI G HG + ++LF V+ P ITF+GV+ AC R L+ EGR
Sbjct: 332 FAWNSMICGLATHGLGHDAVQLFEKFVS-----EGFCPTSITFVGVLNACSRTGLVDEGR 386
Query: 346 KYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLL 405
+YF+ M + Y I+ HY CM +L + A L +EA E++ M + + ++W ++L
Sbjct: 387 RYFKLMAEKYDIESEMEHYGCMVDLLSRAGLVQEAVELIEGM-----RIPPDPVLWGTIL 441
Query: 406 SLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGR 465
S C+ G V + + +++DP Y L ++YA A +W++V +VR+LM R +
Sbjct: 442 SACKRHGLVDLGITVGNKLIELDPAHDGYYVLLASIYAKAKKWDEVRKVRKLMSNRGTSK 501
Query: 466 MPGCRLVDLKEVVEKLKVGHFWRGGMKEEVNKMMECRQSRSLATVSKQL 514
G L++ +V K VG ++N R L T++++L
Sbjct: 502 SAGWSLMEAHGIVHKFLVG---------DMNHKDSARIYNMLCTINRRL 541
>gi|357469751|ref|XP_003605160.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355506215|gb|AES87357.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 1026
Score = 264 bits (674), Expect = 9e-68, Method: Compositional matrix adjust.
Identities = 143/445 (32%), Positives = 238/445 (53%), Gaps = 19/445 (4%)
Query: 70 QGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLI 129
+ + Y +M PN T + + SC++ + G H ++G++F +P+ N+L+
Sbjct: 242 EAIKIYKEMEAEKVRPNEITMIGMISSCSQVQDLNLGKEFHCYIKEHGLEFTIPLTNALM 301
Query: 130 NMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNI 189
+MY G + AR +F M+ + L+SW ++V G+ R G + A E+ +PE++VV WN
Sbjct: 302 DMYVKCGELLTARVLFDNMAQKTLVSWTTMVLGYARFGFLDVAREILYKIPEKSVVPWNA 361
Query: 190 MISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTS 249
+ISG ++ +L LF EM + TM + L+AC + + G +H Y R
Sbjct: 362 IISGCVQAKQGKEALALFHEMQIRTIEPDKVTMVNCLSACSQLGALDVGIWIHHYIERHK 421
Query: 250 LKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFT 309
L ++ L TAL+D+Y+KC + A +VF+ + RN + W A+I G +HG ++ + F+
Sbjct: 422 LSIDVALGTALVDMYAKCGNIARALQVFEEIPQRNCLTWTAVICGLALHGNAQDALSYFS 481
Query: 310 ALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMAN 369
+++ I PDEITF+GV+ AC L+ EGRKYF +M + + P HY CM +
Sbjct: 482 KMIH-----IGIVPDEITFLGVLSACCHGGLVEEGRKYFSEMSSKFNVSPKLKHYSCMVD 536
Query: 370 LYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDP 429
L A EEAEE+++ MP M+ ++ + +L CR G V + ER A +++DP
Sbjct: 537 LLGRAGHLEEAEELVKNMP-----MAADAAVLGALFFACRVYGNVQIGERTAFKLLEIDP 591
Query: 430 QDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLKEVVEKLKVGHFWRG 489
QD Y L ++Y+ A W++ R+LM + + + PGC LV++ +V + V R
Sbjct: 592 QDSGNYVLLASMYSEAKMWKEARSARKLMNDKGVEKTPGCSLVEINGIVHEFVV----RD 647
Query: 490 GMKEEVNKMMECRQSRSLATVSKQL 514
+ + EC L T++KQL
Sbjct: 648 VSHPQSEWIYEC-----LVTLTKQL 667
Score = 135 bits (340), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 127/527 (24%), Positives = 226/527 (42%), Gaps = 106/527 (20%)
Query: 3 QLLQIQAHLITSGLFFNNSFWTINLLKHSADFGSP--DYTVLVFKCINNPGTFCVNAVIK 60
QL QIQA ++++GL N F L+ A S DY + I F NA I+
Sbjct: 72 QLKQIQAQMVSTGLI-ENGFAASRLVAFCALSESKELDYCTRILYRIKELNVFSWNAAIR 130
Query: 61 AYSNSCVPDQGVVFYLQMIKNGFM-PNSYTFVSLFGSCAK--TGCVERGGMCHGLALKNG 117
Y S + G + Y +M+ G + P+++T+ L C + C+ G + H LK G
Sbjct: 131 GYVESGDIEGGFMLYKRMLLGGTLKPDNHTYPLLLKGCCGQYSSCLGLGVLGH--VLKFG 188
Query: 118 VDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFD 177
+ ++ V N+ I M + C G++S A+++F+
Sbjct: 189 FECDIFVHNASITML-----LSC--------------------------GELSVAYDVFN 217
Query: 178 IMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNE 237
R++V+WN MI+G K G ++K+++EM R N+ TM ++++C + N
Sbjct: 218 KSRVRDLVTWNSMITGCVKRGLAIEAIKIYKEMEAEKVRPNEITMIGMISSCSQVQDLNL 277
Query: 238 GRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHC- 296
G+ H Y L+ I L AL+D+Y KC ++ A+ +FD+MA + LV W M+LG+
Sbjct: 278 GKEFHCYIKEHGLEFTIPLTNALMDMYVKCGELLTARVLFDNMAQKTLVSWTTMVLGYAR 337
Query: 297 ----------IHGKPEEGIKLFTALVNGTVAGG---------------SISPDEITFIGV 331
++ PE+ + + A+++G V +I PD++T +
Sbjct: 338 FGFLDVAREILYKIPEKSVVPWNAIISGCVQAKQGKEALALFHEMQIRTIEPDKVTMVNC 397
Query: 332 ICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDN 391
+ AC + L G + I+ +K+ + A + ++YA A ++ ++P+ N
Sbjct: 398 LSACSQLGALDVG-IWIHHYIERHKLSIDVALGTALVDMYAKCGNIARALQVFEEIPQRN 456
Query: 392 ------------------DNMSF-----------ESIMWVSLLSLCRFQGAVAMVERLAK 422
D +S+ + I ++ +LS C G +VE K
Sbjct: 457 CLTWTAVICGLALHGNAQDALSYFSKMIHIGIVPDEITFLGVLSACCHGG---LVEEGRK 513
Query: 423 SFVDMDPQ-----DFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMG 464
F +M + Y ++++ AG E+ EL+K M
Sbjct: 514 YFSEMSSKFNVSPKLKHYSCMVDLLGRAGHLEE---AEELVKNMPMA 557
>gi|347954518|gb|AEP33759.1| organelle transcript processing 82, partial [Brassica oleracea]
Length = 691
Score = 264 bits (674), Expect = 9e-68, Method: Compositional matrix adjust.
Identities = 147/446 (32%), Positives = 231/446 (51%), Gaps = 46/446 (10%)
Query: 43 VFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGC 102
VF I NA+I Y +C ++ + + +M++ P+ T VS+ +CA++G
Sbjct: 171 VFDXITERDVVSWNAMITGYVENCGYEEALELFKEMMRTNVRPDEGTLVSVLSACAQSGS 230
Query: 103 VERGGMCHGLAL-KNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVS 161
+E G H L +G L ++N+ I +Y
Sbjct: 231 IELGREIHTLVDDHHGFGSSLKIVNAFIGLYS---------------------------- 262
Query: 162 GHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKT 221
+ GD+ A LF+ + ++VVSWN +I GY+ +L LF+EM++SG ND T
Sbjct: 263 ---KCGDVEIASGLFEGLSCKDVVSWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNDVT 319
Query: 222 MASVLTACGRSARFNEGRSVHGYTVR--TSLKPNIILDTALIDLYSKCQKVEVAQRVFDS 279
M SVL AC + GR +H Y + + L T+LID+Y+KC +E A +VF+S
Sbjct: 320 MLSVLPACAHLGAIDIGRWIHVYIDKRLKGVTNGSALRTSLIDMYAKCGDIEAAHQVFNS 379
Query: 280 MADRNLVCWNAMILGHCIHGKPEEGIKLFTAL-VNGTVAGGSISPDEITFIGVICACVRA 338
M ++L WNAMI G +HG+ LF+ + NG I PD+IT +G++ AC +
Sbjct: 380 MMHKSLSSWNAMIFGFAMHGRANAAFDLFSRMRKNG------IEPDDITLVGLLSACSHS 433
Query: 339 ELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFES 398
LL GR F+ + Y I P HY CM +L A L +EAEEI+ MP + D
Sbjct: 434 GLLDLGRHIFKSVTQDYNITPKLEHYGCMIDLLGHAGLFKEAEEIIHMMPMEPDG----- 488
Query: 399 IMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELM 458
++W SLL C+ G + + E A+ ++++P++ Y L N+YA AG+WEDVAR+RE++
Sbjct: 489 VIWCSLLKACKMHGNLELAESFAQKLMEIEPENSGSYVLLSNIYATAGRWEDVARIREVL 548
Query: 459 KKRRMGRMPGCRLVDLKEVVEKLKVG 484
+ M ++PGC +++ VV + +G
Sbjct: 549 NGKGMKKVPGCSSIEIDSVVHEFIIG 574
Score = 186 bits (472), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 133/492 (27%), Positives = 233/492 (47%), Gaps = 52/492 (10%)
Query: 8 QAHLITSGLFFNNSFWT--INLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSNS 65
A ++ +GL N + + L S F Y V VF+ P N +++ ++S
Sbjct: 2 HAQMVKTGLHNTNYALSKLLELCVVSPHFDGLPYAVSVFETXQEPNLLIWNTMLRGLASS 61
Query: 66 CVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVM 125
+ Y++M+ G +PN+YTF L SCAK+ E G H +K G + +
Sbjct: 62 SDLVSPLEMYVRMVSXGHVPNAYTFPFLLKSCAKSKTFEEGRQIHAQVMKLGCELDRYAH 121
Query: 126 NSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVV 185
SLI+MY G ++ AR +F S RD++S ++++G+ GD+ +A ++FD + ER+VV
Sbjct: 122 TSLISMYARNGRLEDARKVFDXSSQRDVVSCTALITGYASRGDVRSARKVFDXITERDVV 181
Query: 186 SWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHG-- 243
SWN MI+GY ++ +L+LF+EMM++ R ++ T+ SVL+AC +S GR +H
Sbjct: 182 SWNAMITGYVENCGYEEALELFKEMMRTNVRPDEGTLVSVLSACAQSGSIELGREIHTLV 241
Query: 244 ---YTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGK 300
+ +SLK + A I LYSKC VE+A +F+ ++ +++V WN +I G+
Sbjct: 242 DDHHGFGSSLK----IVNAFIGLYSKCGDVEIASGLFEGLSCKDVVSWNTLIGGYTHMNL 297
Query: 301 PEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMID--FYKIK 358
+E + LF ++ SP+++T + V+ AC + GR + ID +
Sbjct: 298 YKEALLLFQEMLR-----SGESPNDVTMLSVLPACAHLGAIDIGR-WIHVYIDKRLKGVT 351
Query: 359 PNFAHYWCMANLYAGAELTEEAEEILRKMPEDN----------------DNMSF------ 396
A + ++YA E A ++ M + N +F
Sbjct: 352 NGSALRTSLIDMYAKCGDIEAAHQVFNSMMHKSLSSWNAMIFGFAMHGRANAAFDLFSRM 411
Query: 397 -------ESIMWVSLLSLCRFQGAVAMVERLAKSFV---DMDPQDFSRYQFLLNVYAVAG 446
+ I V LLS C G + + + KS ++ P+ Y ++++ AG
Sbjct: 412 RKNGIEPDDITLVGLLSACSHSGLLDLGRHIFKSVTQDYNITPK-LEHYGCMIDLLGHAG 470
Query: 447 QWEDVARVRELM 458
+++ + +M
Sbjct: 471 LFKEAEEIIHMM 482
>gi|225435834|ref|XP_002283791.1| PREDICTED: pentatricopeptide repeat-containing protein At5g56310
[Vitis vinifera]
Length = 576
Score = 264 bits (674), Expect = 9e-68, Method: Compositional matrix adjust.
Identities = 138/484 (28%), Positives = 250/484 (51%), Gaps = 11/484 (2%)
Query: 1 MKQLLQIQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIK 60
+K L Q +++ GL +N + ++ + G Y+ +F P + N +IK
Sbjct: 54 LKHLHQTHCFMLSRGLDQDNILLS-RFIEACSSLGFSHYSHSIFTHKTRPDIYLYNTIIK 112
Query: 61 AYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDF 120
A SN + + ++ Y +++ + ++Y+ + + + + G H A+ G+
Sbjct: 113 ALSNPELATEAILLYNRILASDLRFDTYSLPFVLKAVVRLLAIHVGRQIHCQAIGTGLVS 172
Query: 121 ELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMP 180
++ V+ +LI MY G + AR +F + RD+ WN++V+G+ + GD+ A LF+ MP
Sbjct: 173 DIHVVTALIQMYSSCGCVSEARQLFDGVCFRDVAFWNAMVAGYAKVGDVDNARHLFERMP 232
Query: 181 ERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRS 240
ERNV+SW +I+GY++ P ++ +FR M ++ M + L+AC G
Sbjct: 233 ERNVISWTAVIAGYAQMDRPNEAITMFRRMQLEEVEPDEIAMLAALSACAHLGALELGEW 292
Query: 241 VHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGK 300
+H Y + L + L+ ALID+Y+KC K+E A VF +M ++++ W +MI G +HG
Sbjct: 293 IHNYIDKHGLSKIVPLNNALIDMYAKCGKIEKALEVFKNMEHKSVITWTSMIDGLALHGL 352
Query: 301 PEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPN 360
E +++F+ + I P+EITF+ ++ AC L+ GR YF+ M Y IKP
Sbjct: 353 GREALEMFSCMER-----NRIKPNEITFVAILSACCHVGLVEMGRWYFKCMGTKYGIKPK 407
Query: 361 FAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERL 420
HY CM +L A +EA+E++R MP + + + +W SLL+ R G + ++
Sbjct: 408 IQHYGCMIDLLGRAGFLQEAQELVRGMPFEAN-----APIWGSLLAAARIHGDAELGKQA 462
Query: 421 AKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLKEVVEK 480
+ + ++P + Y L N+YA +W + VR++M+ + +MPG +++ V +
Sbjct: 463 LQHLIKVEPHNSGNYTLLSNIYATQSKWNEAGMVRKVMRDTGVKKMPGGSCIEVNNRVHE 522
Query: 481 LKVG 484
G
Sbjct: 523 FVAG 526
>gi|147774372|emb|CAN72397.1| hypothetical protein VITISV_041201 [Vitis vinifera]
Length = 576
Score = 264 bits (674), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 138/484 (28%), Positives = 250/484 (51%), Gaps = 11/484 (2%)
Query: 1 MKQLLQIQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIK 60
+K L Q +++ GL +N + ++ + G Y+ +F P + N +IK
Sbjct: 54 LKHLHQTHCFMLSRGLDQDNILLS-RFIEACSSLGFSHYSHSIFTHKTRPDIYLYNTIIK 112
Query: 61 AYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDF 120
A SN + + ++ Y +++ + ++Y+ + + + + G H A+ G+
Sbjct: 113 ALSNPELATEAILLYNRILASDLRFDTYSLPFVLKAVVRLLAIHVGRQIHCQAIGTGLVS 172
Query: 121 ELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMP 180
++ V+ +LI MY G + AR +F + RD+ WN++V+G+ + GD+ A LF+ MP
Sbjct: 173 DIHVVTALIQMYSSCGCVSEARQLFDGVCFRDVAFWNAMVAGYAKVGDVDNARHLFERMP 232
Query: 181 ERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRS 240
ERNV+SW +I+GY++ P ++ +FR M ++ M + L+AC G
Sbjct: 233 ERNVISWTAVIAGYAQMDRPNEAITMFRRMQLEEVEPDEIAMLAALSACAHLGALELGEW 292
Query: 241 VHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGK 300
+H Y + L + L+ ALID+Y+KC K+E A VF +M ++++ W +MI G +HG
Sbjct: 293 IHNYIDKHGLSKIVPLNNALIDMYAKCGKIEKALEVFKNMEHKSVITWTSMIDGLALHGL 352
Query: 301 PEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPN 360
E +++F+ + I P+EITF+ ++ AC L+ GR YF+ M Y IKP
Sbjct: 353 GREALEMFSCMER-----NRIKPNEITFVAILSACCHVGLVEMGRWYFKCMGTKYGIKPK 407
Query: 361 FAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERL 420
HY CM +L A +EA+E++R MP + + + +W SLL+ R G + ++
Sbjct: 408 IQHYGCMIDLLGRAGFLQEAQELVRGMPFEAN-----APIWGSLLAAARIHGDAELGKQA 462
Query: 421 AKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLKEVVEK 480
+ + ++P + Y L N+YA +W + VR++M+ + +MPG +++ V +
Sbjct: 463 LQHLIKVEPHNSGNYTLLSNIYATQSKWNEAGMVRKVMRDTGVKKMPGGSCIEVNNRVHE 522
Query: 481 LKVG 484
G
Sbjct: 523 FVAG 526
>gi|8778977|gb|AAF79892.1|AC022472_1 Contains similarity to an unknown protein F28A21.160 gi|7486269
from Arabidopsis thaliana BAC F28A21 gi|T04867 and
contains multiple PPR PF|01535 repeats. EST gb|AI999742
comes from this gene. This gene may be cut off, partial
[Arabidopsis thaliana]
Length = 757
Score = 263 bits (673), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 147/449 (32%), Positives = 246/449 (54%), Gaps = 14/449 (3%)
Query: 56 NAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALK 115
N ++ ++ S + VV + ++ GF P+ T S+ S + + G + HG +K
Sbjct: 221 NGILSGFNRSGYHKEAVVMFQKIHHLGFCPDQVTVSSVLPSVGDSEMLNMGRLIHGYVIK 280
Query: 116 NGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHEL 175
G+ + V++++I+MYG G + ++F Q + N+ ++G R+G + A E+
Sbjct: 281 QGLLKDKCVISAMIDMYGKSGHVYGIISLFNQFEMMEAGVCNAYITGLSRNGLVDKALEM 340
Query: 176 FDIMPER----NVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGR 231
F++ E+ NVVSW +I+G +++G +L+LFREM +G + N T+ S+L ACG
Sbjct: 341 FELFKEQTMELNVVSWTSIIAGCAQNGKDIEALELFREMQVAGVKPNHVTIPSMLPACGN 400
Query: 232 SARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAM 291
A GRS HG+ VR L N+ + +ALID+Y+KC ++ ++Q VF+ M +NLVCWN++
Sbjct: 401 IAALGHGRSTHGFAVRVHLLDNVHVGSALIDMYAKCGRINLSQIVFNMMPTKNLVCWNSL 460
Query: 292 ILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQM 351
+ G +HGK +E + +F +L+ + PD I+F ++ AC + L EG KYF+ M
Sbjct: 461 MNGFSMHGKAKEVMSIFESLMR-----TRLKPDFISFTSLLSACGQVGLTDEGWKYFKMM 515
Query: 352 IDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQ 411
+ Y IKP HY CM NL A +EA +++++MP + D S +W +LL+ CR Q
Sbjct: 516 SEEYGIKPRLEHYSCMVNLLGRAGKLQEAYDLIKEMPFEPD-----SCVWGALLNSCRLQ 570
Query: 412 GAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRL 471
V + E A+ ++P++ Y L N+YA G W +V +R M+ + + PGC
Sbjct: 571 NNVDLAEIAAEKLFHLEPENPGTYVLLSNIYAAKGMWTEVDSIRNKMESLGLKKNPGCSW 630
Query: 472 VDLKEVVEKLKVGHFWRGGMKEEVNKMME 500
+ +K V L G + + KM E
Sbjct: 631 IQVKNRVYTLLAGDKSHPQIDQITEKMDE 659
Score = 134 bits (336), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 89/359 (24%), Positives = 180/359 (50%), Gaps = 11/359 (3%)
Query: 6 QIQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSNS 65
Q A ++ SG N+ + + L+ +++ + LV + I +P + +++I A + +
Sbjct: 36 QAHARILKSGAQ-NDGYISAKLIASYSNYNCFNDADLVLQSIPDPTIYSFSSLIYALTKA 94
Query: 66 CVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVM 125
+ Q + + +M +G +P+S+ +LF CA+ + G H ++ +G+D + V
Sbjct: 95 KLFTQSIGVFSRMFSHGLIPDSHVLPNLFKVCAELSAFKVGKQIHCVSCVSGLDMDAFVQ 154
Query: 126 NSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMP----E 181
S+ +MY G M AR +F +MS +D+++ ++++ + R G + + M E
Sbjct: 155 GSMFHMYMRCGRMGDARKVFDRMSDKDVVTCSALLCAYARKGCLEEVVRILSEMESSGIE 214
Query: 182 RNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSV 241
N+VSWN ++SG+++SG ++ +F+++ GF + T++SVL + G S N GR +
Sbjct: 215 ANIVSWNGILSGFNRSGYHKEAVVMFQKIHHLGFCPDQVTVSSVLPSVGDSEMLNMGRLI 274
Query: 242 HGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKP 301
HGY ++ L + + +A+ID+Y K V +F+ NA I G +G
Sbjct: 275 HGYVIKQGLLKDKCVISAMIDMYGKSGHVYGIISLFNQFEMMEAGVCNAYITGLSRNGLV 334
Query: 302 EEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPN 360
++ +++F T + + +++ +I C + E + FR+M +KPN
Sbjct: 335 DKALEMFELFKEQT-----MELNVVSWTSIIAGCAQNGKDIEALELFREM-QVAGVKPN 387
>gi|15223802|ref|NP_173449.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|193806503|sp|Q9LNU6.2|PPR53_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g20230
gi|332191832|gb|AEE29953.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 760
Score = 263 bits (673), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 147/449 (32%), Positives = 246/449 (54%), Gaps = 14/449 (3%)
Query: 56 NAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALK 115
N ++ ++ S + VV + ++ GF P+ T S+ S + + G + HG +K
Sbjct: 221 NGILSGFNRSGYHKEAVVMFQKIHHLGFCPDQVTVSSVLPSVGDSEMLNMGRLIHGYVIK 280
Query: 116 NGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHEL 175
G+ + V++++I+MYG G + ++F Q + N+ ++G R+G + A E+
Sbjct: 281 QGLLKDKCVISAMIDMYGKSGHVYGIISLFNQFEMMEAGVCNAYITGLSRNGLVDKALEM 340
Query: 176 FDIMPER----NVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGR 231
F++ E+ NVVSW +I+G +++G +L+LFREM +G + N T+ S+L ACG
Sbjct: 341 FELFKEQTMELNVVSWTSIIAGCAQNGKDIEALELFREMQVAGVKPNHVTIPSMLPACGN 400
Query: 232 SARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAM 291
A GRS HG+ VR L N+ + +ALID+Y+KC ++ ++Q VF+ M +NLVCWN++
Sbjct: 401 IAALGHGRSTHGFAVRVHLLDNVHVGSALIDMYAKCGRINLSQIVFNMMPTKNLVCWNSL 460
Query: 292 ILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQM 351
+ G +HGK +E + +F +L+ + PD I+F ++ AC + L EG KYF+ M
Sbjct: 461 MNGFSMHGKAKEVMSIFESLMR-----TRLKPDFISFTSLLSACGQVGLTDEGWKYFKMM 515
Query: 352 IDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQ 411
+ Y IKP HY CM NL A +EA +++++MP + D S +W +LL+ CR Q
Sbjct: 516 SEEYGIKPRLEHYSCMVNLLGRAGKLQEAYDLIKEMPFEPD-----SCVWGALLNSCRLQ 570
Query: 412 GAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRL 471
V + E A+ ++P++ Y L N+YA G W +V +R M+ + + PGC
Sbjct: 571 NNVDLAEIAAEKLFHLEPENPGTYVLLSNIYAAKGMWTEVDSIRNKMESLGLKKNPGCSW 630
Query: 472 VDLKEVVEKLKVGHFWRGGMKEEVNKMME 500
+ +K V L G + + KM E
Sbjct: 631 IQVKNRVYTLLAGDKSHPQIDQITEKMDE 659
Score = 134 bits (336), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 89/359 (24%), Positives = 180/359 (50%), Gaps = 11/359 (3%)
Query: 6 QIQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSNS 65
Q A ++ SG N+ + + L+ +++ + LV + I +P + +++I A + +
Sbjct: 36 QAHARILKSGAQ-NDGYISAKLIASYSNYNCFNDADLVLQSIPDPTIYSFSSLIYALTKA 94
Query: 66 CVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVM 125
+ Q + + +M +G +P+S+ +LF CA+ + G H ++ +G+D + V
Sbjct: 95 KLFTQSIGVFSRMFSHGLIPDSHVLPNLFKVCAELSAFKVGKQIHCVSCVSGLDMDAFVQ 154
Query: 126 NSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMP----E 181
S+ +MY G M AR +F +MS +D+++ ++++ + R G + + M E
Sbjct: 155 GSMFHMYMRCGRMGDARKVFDRMSDKDVVTCSALLCAYARKGCLEEVVRILSEMESSGIE 214
Query: 182 RNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSV 241
N+VSWN ++SG+++SG ++ +F+++ GF + T++SVL + G S N GR +
Sbjct: 215 ANIVSWNGILSGFNRSGYHKEAVVMFQKIHHLGFCPDQVTVSSVLPSVGDSEMLNMGRLI 274
Query: 242 HGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKP 301
HGY ++ L + + +A+ID+Y K V +F+ NA I G +G
Sbjct: 275 HGYVIKQGLLKDKCVISAMIDMYGKSGHVYGIISLFNQFEMMEAGVCNAYITGLSRNGLV 334
Query: 302 EEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPN 360
++ +++F T + + +++ +I C + E + FR+M +KPN
Sbjct: 335 DKALEMFELFKEQT-----MELNVVSWTSIIAGCAQNGKDIEALELFREM-QVAGVKPN 387
>gi|224123726|ref|XP_002330193.1| predicted protein [Populus trichocarpa]
gi|222871649|gb|EEF08780.1| predicted protein [Populus trichocarpa]
Length = 485
Score = 263 bits (672), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 147/467 (31%), Positives = 238/467 (50%), Gaps = 11/467 (2%)
Query: 3 QLLQIQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAY 62
QL +I AH + GL N + + + Y +FK NP NA+IK Y
Sbjct: 24 QLREIHAHFLRHGLNQLNQILS-HFVSICGSLNKMAYANRIFKQTQNPTIILFNAMIKGY 82
Query: 63 SNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFEL 122
S + ++ + M G P+ YT L +C+ G ++ G H L G +
Sbjct: 83 SLNGPFEESFRLFSSMKNRGIWPDEYTLAPLLKACSSLGVLQLGKCMHKEVLVVGFEGFS 142
Query: 123 PVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPER 182
+ +I +Y G M+ A +F +M RD+I WN ++ G + GD+ LF M +R
Sbjct: 143 AIRIGVIELYSSCGVMEDAEKVFDEMYQRDVIVWNLMIHGFCKRGDVDMGLCLFRQMRKR 202
Query: 183 NVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVH 242
+VVSWNIMIS ++S +L LF +M+ GF+ ++ T+ +VL C R + G+ +H
Sbjct: 203 SVVSWNIMISCLAQSRRDSEALGLFHDMLDWGFKPDEATVVTVLPICARLGSVDVGKWIH 262
Query: 243 GYTVRTSLKPNII-LDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKP 301
Y + L + + + AL+D Y+K E A+RVFD M +N++ WN +I G ++G
Sbjct: 263 SYAKSSGLYRDFVAVGNALVDFYNKSGMFETARRVFDEMPRKNVISWNTLISGLALNGNG 322
Query: 302 EEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNF 361
E G++L ++N V P++ TF+GV+ C A L GR+ M++ ++I+P
Sbjct: 323 ELGVELLEEMMNEGV-----RPNDATFVGVLSCCAHAGLFERGRELLASMVEHHQIEPKL 377
Query: 362 AHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLA 421
HY CM +L + EA +++R MP N + +W SLLS CR G V +
Sbjct: 378 EHYGCMVDLLGRSGCVREAYDLIRIMPGGAPNAA----LWGSLLSACRTHGDVELAHLAV 433
Query: 422 KSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPG 468
K +D++P + Y L N+YA +W+ VA VR +M+++ + + PG
Sbjct: 434 KELIDLEPWNSGNYVLLSNMYAEEERWDKVANVRGMMREKNVKKTPG 480
>gi|449468660|ref|XP_004152039.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g06145-like [Cucumis sativus]
Length = 697
Score = 263 bits (672), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 144/496 (29%), Positives = 247/496 (49%), Gaps = 43/496 (8%)
Query: 19 NNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQM 78
+ F + S S Y V F + NP F NA+IK + P + + Y+ M
Sbjct: 166 QDCFLVHQFISASFALNSVHYPVFAFTQMENPNVFVYNAMIKGFVYCGYPFRALQCYVHM 225
Query: 79 IK-NGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGA 137
++ + +P SYTF SL +C VE G M H K G + L V +L++ Y
Sbjct: 226 LEESNVLPTSYTFSSLVKACTFMCAVELGQMVHCHIWKKGFESHLFVQTALVDFYSKLEI 285
Query: 138 MDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKS 197
+ AR +F +M RD +W ++VS R GDM +A +LF+ MPERN +WN MI GY++
Sbjct: 286 LSEARKVFDEMCERDAFAWTAMVSALARVGDMDSARKLFEEMPERNTATWNTMIDGYARL 345
Query: 198 GNPGCS-------------------------------LKLFREMMKSGFRGNDKTMASVL 226
GN + L ++ EM +G ++ TM++V
Sbjct: 346 GNVESAELLFNQMPTKDIISWTTMITCYSQNKQYQDALAIYSEMRLNGIIPDEVTMSTVA 405
Query: 227 TACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLV 286
+AC G+ +H Y + L ++ + +AL+D+Y+KC ++++ +F + D+NL
Sbjct: 406 SACAHIGALELGKEIHHYVMSQGLNLDVYIGSALVDMYAKCGSLDLSLLIFFKLTDKNLY 465
Query: 287 CWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRK 346
CWNA+I G +HG E+ +++F + I P+ +TFI ++ AC A L+ EGR
Sbjct: 466 CWNAVIEGLAVHGYAEKALRMFAIMER-----EKIMPNGVTFISILSACTHAGLVDEGRS 520
Query: 347 YFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLS 406
F M Y I+P+ HY CM ++ + + EA E+++ M + + SI+W +LL+
Sbjct: 521 RFLSMTRDYDIRPDIRHYGCMVDMLSKSGYLNEALELIKSMEFEPN-----SIIWGALLN 575
Query: 407 LCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRM-GR 465
C+ G + E + + ++P + Y L+++YA W +VA +R +MK++ + +
Sbjct: 576 GCKLHGNCEIAEDAVEQLMILEPMNSGHYNLLVSMYAEEKDWMEVAHIRSMMKEKGVEKK 635
Query: 466 MPGCRLVDLKEVVEKL 481
PG ++L+ + +
Sbjct: 636 YPGSSWIELEGTIHQF 651
>gi|255543449|ref|XP_002512787.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223547798|gb|EEF49290.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 480
Score = 263 bits (672), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 138/399 (34%), Positives = 215/399 (53%), Gaps = 6/399 (1%)
Query: 7 IQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSNSC 66
+QA +I + L ++ LL+ + DY L+F I NP TF N +I+AY+ +
Sbjct: 51 VQAKIIRNNLS-DDQLLVRKLLRLCFSYQKVDYATLIFDQIQNPHTFTWNFMIRAYNYNG 109
Query: 67 VPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMN 126
Q ++ Y MI GF P+ +TF + +C +++G HG A+K G + + N
Sbjct: 110 NSQQALLLYNLMICEGFSPDKFTFPFVIKACLDHSALDKGKEVHGFAIKTGFWKDTFLSN 169
Query: 127 SLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVS 186
+L+++Y G +D AR +F +M+ R ++SW + V+G V G++ A FD MP RNVVS
Sbjct: 170 TLMDLYFKCGDLDYARKLFDKMAVRSVVSWTTFVAGLVACGELDTARAAFDEMPMRNVVS 229
Query: 187 WNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTV 246
W MI+GY K+ P + +LF+ M + R N T+ +L AC GR +H Y +
Sbjct: 230 WTAMINGYVKNQRPQEAFELFQRMQLANVRPNGFTLVGLLRACTELGSLELGRRIHEYAL 289
Query: 247 RTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIK 306
K + L TALID+YSKC +E A++VF+ M ++L WN+MI +HG +E +
Sbjct: 290 ENGFKVGVFLGTALIDMYSKCGSIEDAKKVFEEMQKKSLATWNSMITSLGVHGFGKEALA 349
Query: 307 LFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWC 366
LF + V PD ITF+GV+ ACV + G +YF+ M + Y I P HY C
Sbjct: 350 LFAQMEEANV-----RPDAITFVGVLFACVNTNNVEAGYRYFKYMTEHYGITPMLEHYTC 404
Query: 367 MANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLL 405
M LY A + E E++ MP ++ +++W S++
Sbjct: 405 MIELYTRAAMLNEVSELVNSMPMKLNSNPAAALVWPSII 443
Score = 55.5 bits (132), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 70/321 (21%), Positives = 125/321 (38%), Gaps = 63/321 (19%)
Query: 226 LTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNL 285
L + + F + V +R +L + +L L+ L QKV+ A +FD + + +
Sbjct: 36 LNLLQKGSNFTHVKLVQAKIIRNNLSDDQLLVRKLLRLCFSYQKVDYATLIFDQIQNPHT 95
Query: 286 VCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGR 345
WN MI + +G ++ + L+ ++ SPD+ TF VI AC+ L +G+
Sbjct: 96 FTWNFMIRAYNYNGNSQQALLLYNLMI-----CEGFSPDKFTFPFVIKACLDHSALDKGK 150
Query: 346 K-------------------------------YFRQMIDFYKIKPNFAHYWCMANLYAGA 374
+ Y R++ D ++ + +A L A
Sbjct: 151 EVHGFAIKTGFWKDTFLSNTLMDLYFKCGDLDYARKLFDKMAVRSVVSWTTFVAGLVACG 210
Query: 375 ELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLC----RFQGAVAMVERLAKSFVDMDPQ 430
EL + A +MP N + W ++++ R Q A + +R+ ++ P
Sbjct: 211 EL-DTARAAFDEMPMRN------VVSWTAMINGYVKNQRPQEAFELFQRM--QLANVRPN 261
Query: 431 DFSRYQFLLNVYAVAGQWEDVARVRE--LMKKRRMGRMPGCRLVDLKEVVEKLKVGHFWR 488
F+ LL G E R+ E L ++G G L+D+ + +
Sbjct: 262 GFTLVG-LLRACTELGSLELGRRIHEYALENGFKVGVFLGTALIDM-----------YSK 309
Query: 489 GGMKEEVNKMMECRQSRSLAT 509
G E+ K+ E Q +SLAT
Sbjct: 310 CGSIEDAKKVFEEMQKKSLAT 330
>gi|297805648|ref|XP_002870708.1| hypothetical protein ARALYDRAFT_493946 [Arabidopsis lyrata subsp.
lyrata]
gi|297316544|gb|EFH46967.1| hypothetical protein ARALYDRAFT_493946 [Arabidopsis lyrata subsp.
lyrata]
Length = 1111
Score = 263 bits (672), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 149/487 (30%), Positives = 258/487 (52%), Gaps = 15/487 (3%)
Query: 2 KQLLQIQAHLITSGLFFNNSFWTINLLKHSA--DFGSPDYTVLVFKCINNPGTFCVNAVI 59
K++ QI A L G ++ +K A D DY + + P F +N++I
Sbjct: 28 KEIRQIHAKLYVDGTLKDDHL-VGQFVKAVALSDHTYLDYANQILDRSDKPTLFALNSMI 86
Query: 60 KAYSNSCVPDQGVVFYLQMIK--NGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNG 117
+A+ S VP++ FY +++ NG P++YT L +C G E G HG+ ++ G
Sbjct: 87 RAHCKSPVPEKSFDFYSRILSSGNGLKPDNYTVNFLVQACTGLGMRETGLQVHGMTIRRG 146
Query: 118 VDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFD 177
D + V LI++Y G +D +F +S D + ++V+ R GD++ A +LF+
Sbjct: 147 FDNDPHVQTGLISLYAELGCLDSCHKVFNSVSYPDFVCRTAMVTACARCGDVAFARKLFE 206
Query: 178 IMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNE 237
MPE++ ++WN MISGY++ G +L LF M G + N +M SVL+AC + ++
Sbjct: 207 GMPEKDPIAWNAMISGYAQVGESREALNLFHLMQLEGVKVNGVSMISVLSACTQLGALDQ 266
Query: 238 GRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCI 297
GR H Y R +K + L T L+DLY+KC ++ A VF M ++N+ W++ + G +
Sbjct: 267 GRWAHSYIERNKIKITVRLGTTLVDLYAKCGDMDKAMEVFWGMEEKNVYTWSSALNGLAM 326
Query: 298 HGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKI 357
+G E+ +KLF+ + V +P+ +TF+ V+ C + EG+K+F M + + I
Sbjct: 327 NGFGEKCLKLFSLMKQDGV-----TPNAVTFVSVLRGCSVVGFVDEGQKHFDSMRNEFGI 381
Query: 358 KPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMV 417
+P HY C+ +LYA A E+A I+++MP M + +W SLL R + +
Sbjct: 382 EPQLDHYGCLVDLYARAGRLEDAVSIIQQMP-----MKAHAAVWSSLLHASRMYKNLELG 436
Query: 418 ERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLKEV 477
+K ++++ + Y L N+YA + W++V+ VR+ MK + + + PGC ++++
Sbjct: 437 VLASKKMLELETSNHGAYVLLSNIYADSDDWDNVSHVRQSMKSKGVRKQPGCSVMEVNGE 496
Query: 478 VEKLKVG 484
V + VG
Sbjct: 497 VHEFFVG 503
Score = 206 bits (524), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 122/419 (29%), Positives = 205/419 (48%), Gaps = 42/419 (10%)
Query: 82 GFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCA 141
GF PN TF+S+ +C G E G HGL +K+GV E+ V+N+L+N+YG
Sbjct: 632 GFRPNEVTFLSMISACVHGGNKEEGVCIHGLVMKSGVLEEVKVVNALMNLYG-------- 683
Query: 142 RNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPG 201
++GD+ ++ +LF+ + +N+VSWN MI + ++G
Sbjct: 684 -----------------------KTGDLISSCKLFEDLSVKNLVSWNTMIVIHLQNGLAE 720
Query: 202 CSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALI 261
L F G + + T +VL C + +HG + N + TAL+
Sbjct: 721 EGLAYFNMSRWVGLKPDQATFLAVLRVCEDIGVVRLSQGIHGLIMFCGFNANTCITTALL 780
Query: 262 DLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSI 321
DLY+K ++E + VF + + + W AM+ + HG + IK F +V+ +
Sbjct: 781 DLYAKLGRLEDSSTVFLEITSPDSMAWTAMLAAYATHGYGRDAIKHFELMVH-----YGL 835
Query: 322 SPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAE 381
SPD +TF ++ AC + L+ EGR YF M Y+I+P HY CM +L + L ++A
Sbjct: 836 SPDHVTFTHLLNACSHSGLVEEGRYYFETMSKRYRIEPRLDHYSCMVDLMGRSGLLQDAY 895
Query: 382 EILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNV 441
++++MP M S +W +LL CR + + AK +++P+D Y L N+
Sbjct: 896 GLIKEMP-----MEPSSGVWGALLGACRVYKDTQLGTKAAKRLFELEPRDGRNYIMLSNI 950
Query: 442 YAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLKEVVEKLKVGHFWRGGMKEEVNKMME 500
Y+ +G W+D +R+R LMK++ + R G ++ + K VG W E++ K ++
Sbjct: 951 YSASGLWKDASRIRNLMKQKGLVRASGYSYIEHGNKIHKFVVGD-WSHPESEKIQKKLK 1008
Score = 55.5 bits (132), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 46/243 (18%), Positives = 99/243 (40%), Gaps = 34/243 (13%)
Query: 56 NAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALK 115
N +I + + + ++G+ ++ G P+ TF+++ C G V HGL +
Sbjct: 707 NTMIVIHLQNGLAEEGLAYFNMSRWVGLKPDQATFLAVLRVCEDIGVVRLSQGIHGLIMF 766
Query: 116 NGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHEL 175
G + + +L+++Y G ++ + +F++++ D ++W +
Sbjct: 767 CGFNANTCITTALLDLYAKLGRLEDSSTVFLEITSPDSMAWTA----------------- 809
Query: 176 FDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARF 235
M++ Y+ G ++K F M+ G + T +L AC S
Sbjct: 810 --------------MLAAYATHGYGRDAIKHFELMVHYGLSPDHVTFTHLLNACSHSGLV 855
Query: 236 NEGR-SVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMA-DRNLVCWNAMIL 293
EGR + R ++P + + ++DL + ++ A + M + + W A+ L
Sbjct: 856 EEGRYYFETMSKRYRIEPRLDHYSCMVDLMGRSGLLQDAYGLIKEMPMEPSSGVWGAL-L 914
Query: 294 GHC 296
G C
Sbjct: 915 GAC 917
Score = 46.6 bits (109), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 44/189 (23%), Positives = 84/189 (44%), Gaps = 9/189 (4%)
Query: 17 FFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYL 76
F N+ T LL A G + + VF I +P + A++ AY+ + +
Sbjct: 769 FNANTCITTALLDLYAKLGRLEDSSTVFLEITSPDSMAWTAMLAAYATHGYGRDAIKHFE 828
Query: 77 QMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMC-HGLALKNGVDFELPVMNSLINMYGCF 135
M+ G P+ TF L +C+ +G VE G ++ + ++ L + ++++ G
Sbjct: 829 LMVHYGLSPDHVTFTHLLNACSHSGLVEEGRYYFETMSKRYRIEPRLDHYSCMVDLMGRS 888
Query: 136 GAMDCARNMFVQMSPRDLIS--WNSIVSGHVRSGDMS----AAHELFDIMPERNVVSWNI 189
G + A + +M P + S W +++ D AA LF++ P R+ ++ +
Sbjct: 889 GLLQDAYGLIKEM-PMEPSSGVWGALLGACRVYKDTQLGTKAAKRLFELEP-RDGRNYIM 946
Query: 190 MISGYSKSG 198
+ + YS SG
Sbjct: 947 LSNIYSASG 955
>gi|147810456|emb|CAN69807.1| hypothetical protein VITISV_019655 [Vitis vinifera]
Length = 516
Score = 263 bits (672), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 153/463 (33%), Positives = 241/463 (52%), Gaps = 43/463 (9%)
Query: 1 MKQLLQIQAHLITSGLFFNNSFWTINLLKHSA--DFGSPDYTVLVFKCINNPGTFCVNAV 58
MK L Q+ AH+I +GL N F ++ A + GS DY + VF I NP F N +
Sbjct: 64 MKHLEQLHAHVIQTGLE-QNLFVMGKIIVFCAVSECGSMDYALRVFGKIENPDGFLWNTM 122
Query: 59 IKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGV 118
I+ + P++ FY +M G + +++T+ L C + G G H LK+G+
Sbjct: 123 IRGLGRTRQPEKAFEFYKRMQVKGEVLDNFTYSFLVKVCGQLGSDLLGKQIHCNVLKHGL 182
Query: 119 DFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDI 178
+ + V N+L++MYG F D+ AA LF+
Sbjct: 183 EEHVFVRNTLVHMYGMFK-------------------------------DIEAATHLFEE 211
Query: 179 MPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEG 238
MP+ +V+WN +I G +++LF M++SG + +D T L+AC + G
Sbjct: 212 MPKSYLVAWNTIIDCNVYCGRYKEAIELFFRMLQSGLKPDDATFVVTLSACAALGELDIG 271
Query: 239 RSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIH 298
R VH T L + + +LID+Y+KC VE A +F+ M RN+V WN MILG +H
Sbjct: 272 RRVHSCIDHTGLGNVVSVSNSLIDMYAKCGVVEAAYEIFNKMKGRNIVSWNTMILGLAMH 331
Query: 299 GKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIK 358
G +E ++LF+ ++ +A +P+E+TF+GV+CAC ++ EGR+YF M Y I+
Sbjct: 332 GHGDEALELFSKMLEEKLA----TPNEVTFLGVLCACSHGGMVEEGRRYFDIMRRDYNIQ 387
Query: 359 PNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVE 418
P HY M ++ A L EEA +++ MP +++ SI+W +LL+ CR G + + E
Sbjct: 388 PTIKHYGSMVDILGRAGLVEEAYRLIKSMPIESN-----SIVWRTLLAACRVHGNLELAE 442
Query: 419 RLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKR 461
++ + ++++P S Y L N+YA AGQW V RVR+ M R
Sbjct: 443 QVRQXLLELEPDHSSDYVLLANMYASAGQWNKVXRVRKSMHIR 485
Score = 42.0 bits (97), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 49/247 (19%), Positives = 110/247 (44%), Gaps = 27/247 (10%)
Query: 214 GFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDL--YSKCQKVE 271
GF ++ + SV C + +H + ++T L+ N+ + +I S+C ++
Sbjct: 46 GFDSREERVMSVFKQCESMKHLEQ---LHAHVIQTGLEQNLFVMGKIIVFCAVSECGSMD 102
Query: 272 VAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGV 331
A RVF + + + WN MI G +PE+ + + + V G + +F+
Sbjct: 103 YALRVFGKIENPDGFLWNTMIRGLGRTRQPEKAFEFYKRM---QVKGEVLDNFTYSFLVK 159
Query: 332 ICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDN 391
+C + ++LL G++ ++ + ++ + + ++Y + E A + +MP+
Sbjct: 160 VCGQLGSDLL--GKQIHCNVLK-HGLEEHVFVRNTLVHMYGMFKDIEAATHLFEEMPKSY 216
Query: 392 DNMSFESIMWVSLLS---LC-RFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQ 447
+ W +++ C R++ A+ + R+ +S + P D + F++ + A A
Sbjct: 217 ------LVAWNTIIDCNVYCGRYKEAIELFFRMLQS--GLKPDDAT---FVVTLSACAAL 265
Query: 448 WE-DVAR 453
E D+ R
Sbjct: 266 GELDIGR 272
>gi|225427963|ref|XP_002277549.1| PREDICTED: pentatricopeptide repeat-containing protein At2g21090
[Vitis vinifera]
Length = 612
Score = 263 bits (671), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 151/496 (30%), Positives = 261/496 (52%), Gaps = 12/496 (2%)
Query: 6 QIQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSNS 65
+++A + + N + N+L A G +F + N ++ A++
Sbjct: 111 EVEARKVFDKMSARNLYSWNNMLSGYAKLGMIKPARKLFDKMPEKDVVSWNTMVIAHAQC 170
Query: 66 CVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVM 125
D+ + FY + + G N ++F + C K V HG L G + +
Sbjct: 171 GYWDEALRFYSEFRQLGIQCNGFSFAGVLTVCVKLKEVGLTRQVHGQILVAGFLSNVVLS 230
Query: 126 NSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVV 185
+S+++ Y G M AR +F +MS RD+++W ++VSG+ + GDM +A+ELF MPE+N V
Sbjct: 231 SSVLDAYVKCGLMGDARKLFDEMSARDVLAWTTMVSGYAKWGDMKSANELFVEMPEKNPV 290
Query: 186 SWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYT 245
SW +ISGY+++G +L+LF +MM R + T +S L AC A G+ +H Y
Sbjct: 291 SWTALISGYARNGMGHKALELFTKMMLFHVRPDQFTFSSCLCACASIASLKHGKQIHAYL 350
Query: 246 VRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADR-NLVCWNAMILGHCIHGKPEEG 304
+R + +PN I+ +ALID+YSKC + + ++VFD M ++ ++V WN +I HG EE
Sbjct: 351 LRINFQPNTIVVSALIDMYSKCGSLGIGRKVFDLMGNKLDVVLWNTIISALAQHGCGEEA 410
Query: 305 IKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHY 364
I++ +V PD+ITF+ ++ AC + L+ +G +F M Y I P+ HY
Sbjct: 411 IQMLDDMVRSGA-----KPDKITFVVILNACSHSGLVQQGLNFFESMSCDYGIVPSQEHY 465
Query: 365 WCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSF 424
C+ +L A EE + L KMP D+ +W +LL +CR G + + + A+
Sbjct: 466 ACLIDLLGRAGCFEEVMDQLEKMPYKPDDR-----VWNALLGVCRIHGHIELGRKAAERL 520
Query: 425 VDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLKEVVEKLKVG 484
++++PQ + Y L ++YAV G+WE V +VR+LM +R++ + ++++ V V
Sbjct: 521 IELEPQSSTAYVLLSSIYAVLGRWESVQKVRQLMNERQVKKERAISWLEIENKVHSFSVS 580
Query: 485 HFWRGGMKEEVNKMME 500
+KE++ ++E
Sbjct: 581 DS-SHPLKEQIYSVLE 595
Score = 149 bits (376), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 99/336 (29%), Positives = 163/336 (48%), Gaps = 37/336 (11%)
Query: 55 VNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLAL 114
V A++K + + ++ V + + G +S T SL CA + + G H L L
Sbjct: 28 VEAIVKLCKKNKL-NEAVSSLENLARRGLRLDSRTLASLLQHCADSRALREGKRVH-LHL 85
Query: 115 KNGVDFELP---VMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSA 171
K + P + N LINMY G AR +F +MS R+L SWN+++SG+ + G +
Sbjct: 86 KL-TGLKRPGTFLSNHLINMYAKCGKEVEARKVFDKMSARNLYSWNNMLSGYAKLGMIKP 144
Query: 172 AHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGR 231
A +LFD MPE++VVSWN M+ +++ G +L+ + E + G + N + A VLT C +
Sbjct: 145 ARKLFDKMPEKDVVSWNTMVIAHAQCGYWDEALRFYSEFRQLGIQCNGFSFAGVLTVCVK 204
Query: 232 SARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAM 291
R VHG + N++L ++++D Y KC + A+++FD M+ R+++ W M
Sbjct: 205 LKEVGLTRQVHGQILVAGFLSNVVLSSSVLDAYVKCGLMGDARKLFDEMSARDVLAWTTM 264
Query: 292 ILGHCIHGK-----------PEEGIKLFTALVNGTVAGG---------------SISPDE 325
+ G+ G PE+ +TAL++G G + PD+
Sbjct: 265 VSGYAKWGDMKSANELFVEMPEKNPVSWTALISGYARNGMGHKALELFTKMMLFHVRPDQ 324
Query: 326 ITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNF 361
TF +CAC L G++ I Y ++ NF
Sbjct: 325 FTFSSCLCACASIASLKHGKQ-----IHAYLLRINF 355
>gi|148906747|gb|ABR16520.1| unknown [Picea sitchensis]
Length = 644
Score = 263 bits (671), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 153/474 (32%), Positives = 253/474 (53%), Gaps = 20/474 (4%)
Query: 12 ITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSNSCVPDQG 71
I G F +N F L+ A G ++ +F + NA+I Y + + +
Sbjct: 189 IVKGGFESNVFVGNGLVDMYAKRGCIEFARELFDKMPQRDVVSWNAMIAGYVQNGLIEDA 248
Query: 72 VVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERG-GMCHGLALKNGVDFELPVMNSLIN 130
+ + ++ K + T+ ++ A+ G VE + + +N V + N++I
Sbjct: 249 LKLFQEIPKRDVI----TWNTMMAGYAQCGDVENAVELFEKMPEQNLVSW-----NTMIA 299
Query: 131 MYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIM 190
Y G++ A +F M R++ISWN+++SG ++G + A +LF MPE NVVSWN M
Sbjct: 300 GYVQNGSVKEAFKLFQIMPERNVISWNAVISGFAQNGQVEEALKLFKTMPECNVVSWNAM 359
Query: 191 ISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSL 250
I+GYS++G +LKLF +M + N +T A VL AC A +G H +R+
Sbjct: 360 IAGYSQNGQAENALKLFGQMQMVDMKPNTETFAIVLPACAALAVLEQGNEAHEVVIRSGF 419
Query: 251 KPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTA 310
+ ++++ L+ +Y+KC +E A++VFD M ++ +AMI+G+ I+G +E ++LF
Sbjct: 420 QSDVLVGNTLVGMYAKCGSIEDARKVFDRMRQQDSASLSAMIVGYAINGCSKESLELFEQ 479
Query: 311 LVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANL 370
+ + PD +TF+GV+ AC A L+ EGR+YF M FY I P HY CM +L
Sbjct: 480 M-----QFTGLKPDRVTFVGVLSACCHAGLVDEGRQYFDIMTRFYHITPAMEHYGCMIDL 534
Query: 371 YAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQ 430
A +EA +++ KMP D + MW SLLS CR + + E++A+ + ++PQ
Sbjct: 535 LGRAGCFDEANDLINKMPIKPD-----ADMWGSLLSACRTHNNIDLGEKVAQHLIALNPQ 589
Query: 431 DFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLKEVVEKLKVG 484
+ + Y L N+YA AG+W+D+ VR MK R++ + GC + +K+ V VG
Sbjct: 590 NPAPYVLLSNIYAAAGRWDDIGSVRNRMKDRKVKKKLGCSWIVIKKQVHAFLVG 643
Score = 142 bits (357), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 92/339 (27%), Positives = 174/339 (51%), Gaps = 25/339 (7%)
Query: 57 AVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKN 116
A+I AY+ + + F+ +M G PN +TF S+ +C +E G H +K
Sbjct: 136 AMIAAYARHEHGQEALGFFYEMQDVGIQPNHFTFASILPACTD---LEVLGEFHDEIVKG 192
Query: 117 GVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELF 176
G + + V N L++MY G ++ AR +F +M RD++SWN++++G+V++G + A +LF
Sbjct: 193 GFESNVFVGNGLVDMYAKRGCIEFARELFDKMPQRDVVSWNAMIAGYVQNGLIEDALKLF 252
Query: 177 DIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFN 236
+P+R+V++WN M++GY++ G+ +++LF +M + + +A + F
Sbjct: 253 QEIPKRDVITWNTMMAGYAQCGDVENAVELFEKMPEQNLVSWNTMIAGYVQNGSVKEAFK 312
Query: 237 EGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHC 296
+ + N+I A+I +++ +VE A ++F +M + N+V WNAMI G+
Sbjct: 313 --------LFQIMPERNVISWNAVISGFAQNGQVEEALKLFKTMPECNVVSWNAMIAGYS 364
Query: 297 IHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYK 356
+G+ E +KLF G + + P+ TF V+ AC +L +G + +
Sbjct: 365 QNGQAENALKLF-----GQMQMVDMKPNTETFAIVLPACAALAVLEQGNEAHEVV----- 414
Query: 357 IKPNFAHYWCMAN----LYAGAELTEEAEEILRKMPEDN 391
I+ F + N +YA E+A ++ +M + +
Sbjct: 415 IRSGFQSDVLVGNTLVGMYAKCGSIEDARKVFDRMRQQD 453
Score = 117 bits (292), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 102/406 (25%), Positives = 170/406 (41%), Gaps = 67/406 (16%)
Query: 78 MIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGA 137
M++NG P+S T+ SL C + + H
Sbjct: 55 MVENGIWPHSSTYDSLLQGCLNAKSLPDAKLLH--------------------------- 87
Query: 138 MDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKS 197
A + Q +D+ N +VS +V+ G + A +FD MP +NVVSW MI+ Y++
Sbjct: 88 ---AHMIQTQFECQDISLGNKLVSIYVKLGSLVEARRVFDEMPVKNVVSWTAMIAAYARH 144
Query: 198 GNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILD 257
+ +L F EM G + N T AS+L AC E H V+ + N+ +
Sbjct: 145 EHGQEALGFFYEMQDVGIQPNHFTFASILPACTDLEVLGE---FHDEIVKGGFESNVFVG 201
Query: 258 TALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVA 317
L+D+Y+K +E A+ +FD M R++V WNAMI G+ +G E+ +KLF +
Sbjct: 202 NGLVDMYAKRGCIEFARELFDKMPQRDVVSWNAMIAGYVQNGLIEDALKLFQEIP----- 256
Query: 318 GGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELT 377
D IT+ ++ + + + F +M + N + M Y
Sbjct: 257 ----KRDVITWNTMMAGYAQCGDVENAVELFEKMPE-----QNLVSWNTMIAGYVQNGSV 307
Query: 378 EEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQF 437
+EA ++ + MPE N I W +++S G VE K F M + +
Sbjct: 308 KEAFKLFQIMPERN------VISWNAVISGFAQNG---QVEEALKLFKTMPECNVVSWNA 358
Query: 438 LLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLKEVVEKLKV 483
++ Y+ GQ E+ ++ G+M ++VD+K E +
Sbjct: 359 MIAGYSQNGQAENALKL--------FGQM---QMVDMKPNTETFAI 393
>gi|242036805|ref|XP_002465797.1| hypothetical protein SORBIDRAFT_01g045970 [Sorghum bicolor]
gi|241919651|gb|EER92795.1| hypothetical protein SORBIDRAFT_01g045970 [Sorghum bicolor]
Length = 531
Score = 263 bits (671), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 158/521 (30%), Positives = 255/521 (48%), Gaps = 52/521 (9%)
Query: 1 MKQLLQIQAHLITSGLFFNNSFWTINLLKHSADF-GSPDYTVLVFKCINNPGTFCVNAVI 59
++Q+ Q+ A ++ G + S + S G + LVF I +P F N +I
Sbjct: 21 LRQIKQVHALMVLRGFLSDPSALRELIFASSVGVRGGTAHARLVFDRIPHPDRFMYNTLI 80
Query: 60 KAYSNSCVPDQGVVFYLQMIKN------GFMPNSYTFVSLFGSCAKTGCVERGGMCHGLA 113
+ ++S P V Y +M ++ G P+ TF + +CA G E G H
Sbjct: 81 RGAAHSYAPRDAVSIYARMARHSAGCGGGVRPDKRTFPFVLRACAAMGASETGAQVHAHV 140
Query: 114 LKNGVDFELPVMNSLINMY---GCFGA----------------------------MDCAR 142
+K G + + V N+LI M+ G GA + AR
Sbjct: 141 VKAGCESDAFVRNALIGMHATCGDLGAAAALFDGEAREDAVAWSAMISGFARRGDIGAAR 200
Query: 143 NMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGC 202
+F + +DL+SWN +++ + + GDM+ A ELFD P+R+VVSWN MISGY + G+
Sbjct: 201 ELFDESPVKDLVSWNVMITAYAKLGDMAPARELFDGAPDRDVVSWNAMISGYVRCGSHKQ 260
Query: 203 SLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVR--TSLKPNIILDTAL 260
+++LF +M G + + TM S+L+AC S + GR +H + + + P+ +L AL
Sbjct: 261 AMELFEQMQAMGEKPDTVTMLSLLSACADSGDMDAGRRLHRFLSGRFSRIGPSTVLGNAL 320
Query: 261 IDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGS 320
ID+Y+KC + A VF M D+N+ WN++I G +HG E I +F ++ G V
Sbjct: 321 IDMYAKCGSMTSALEVFWLMQDKNVSTWNSIIGGLALHGHVTEAIDVFQKMLQGNV---- 376
Query: 321 ISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEA 380
PDEITF+ V+ AC ++ +G +YF M Y I+PN HY CM ++ + A L +EA
Sbjct: 377 -KPDEITFVAVLVACSHGGMVDKGHEYFNLMQQRYMIEPNVKHYGCMVDMLSRAGLLKEA 435
Query: 381 EEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLN 440
E + M + ++W +LL CR G + + E + + + L N
Sbjct: 436 FEFIGTM-----KIEPNPVIWRTLLGACRIHGELELAEHANQELLKARSDASGDFVLLSN 490
Query: 441 VYAVAGQWEDVARVRELMKKRRMGRMPGCRLVD--LKEVVE 479
+YA G+W +R+LM + + GC +VD K+V++
Sbjct: 491 IYASVGEWLGSENMRKLMDDSGVNKEAGCAVVDGSSKDVID 531
>gi|449517761|ref|XP_004165913.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g06145-like [Cucumis sativus]
Length = 600
Score = 263 bits (671), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 143/496 (28%), Positives = 247/496 (49%), Gaps = 43/496 (8%)
Query: 19 NNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQM 78
+ F + S S Y V F + NP F NA+IK + P + + Y+ M
Sbjct: 69 QDCFLVHQFISASFALNSVHYPVFAFTQMENPNVFVYNAMIKGFVYCGYPFRALQCYVHM 128
Query: 79 IK-NGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGA 137
++ + +P SYTF SL +C VE G M H K G + L V +L++ Y
Sbjct: 129 LEESNVLPTSYTFSSLVKACTFMCAVELGQMVHCHIWKKGFESHLFVQTALVDFYSKLEI 188
Query: 138 MDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKS 197
+ AR +F +M RD +W +++S R GDM +A +LF+ MPERN +WN MI GY++
Sbjct: 189 LSEARKVFDEMCERDAFAWTAMLSALARVGDMDSARKLFEEMPERNTATWNTMIDGYTRL 248
Query: 198 GNPGCS-------------------------------LKLFREMMKSGFRGNDKTMASVL 226
GN + L ++ EM +G ++ TM++V
Sbjct: 249 GNVESAELLFNQMPTKDIISWTTMITCYSQNKQYQDALAIYSEMRLNGIIPDEVTMSTVA 308
Query: 227 TACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLV 286
+AC G+ +H Y + L ++ + +AL+D+Y+KC ++++ +F + D+NL
Sbjct: 309 SACAHIGALELGKEIHHYVMSQGLNLDVYIGSALVDMYAKCGSLDLSLLIFFKLTDKNLY 368
Query: 287 CWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRK 346
CWNA+I G +HG E+ +++F + I P+ +TFI ++ AC A L+ EGR
Sbjct: 369 CWNAVIEGLAVHGYAEKALRMF-----AIMEREKIMPNGVTFISILSACTHAGLVDEGRS 423
Query: 347 YFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLS 406
F M Y I+P+ HY CM ++ + + EA E+++ M + + SI+W +LL+
Sbjct: 424 RFLSMTRDYDIRPDIRHYGCMVDMLSKSGYLNEALELIKSMEFEPN-----SIIWGALLN 478
Query: 407 LCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRM-GR 465
C+ G + E + + ++P + Y L+++YA W +VA +R +MK++ + +
Sbjct: 479 GCKLHGNCEIAEDAVEQLMILEPMNSGHYNLLVSMYAEEKDWMEVAHIRSMMKEKGVEKK 538
Query: 466 MPGCRLVDLKEVVEKL 481
PG ++L+ + +
Sbjct: 539 YPGSSWIELEGTIHQF 554
>gi|356527575|ref|XP_003532384.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g61800-like [Glycine max]
Length = 577
Score = 263 bits (671), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 150/487 (30%), Positives = 256/487 (52%), Gaps = 21/487 (4%)
Query: 1 MKQLLQIQAHLITSGLFFNNSFWTINLLKHSADFGSPD----------YTVLVFKCINNP 50
+ QL Q+ AH IT+GL ++F +N + + Y + +F I NP
Sbjct: 13 ISQLHQVHAHSITTGLLPLHTFPILNNILSTLSSLLTTSSNSNSIITFYALSLFHSIPNP 72
Query: 51 GTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCH 110
TF N +I+ ++ P + + + + P+ +TF + + A+ + H
Sbjct: 73 STFSFNTLIRIHTLLLSPLPALHLFSTLRRLSLPPDFHTFPFVLKASAQLHSLSLAQSLH 132
Query: 111 GLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMS 170
ALK G+ +L +N+LI +Y ++ A +F + D++S+N+++ G V++ +S
Sbjct: 133 SQALKFGLLPDLFSLNTLIGVYSIHHRVNDAHKLFYECPHGDVVSYNALIHGLVKTRQIS 192
Query: 171 AAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACG 230
A ELFD MP R+ +SW MI+GYS +++LF EMM+ + ++ + SVL+AC
Sbjct: 193 RARELFDEMPVRDEISWGTMIAGYSHLKLCNQAIELFNEMMRLEVKPDNIALVSVLSACA 252
Query: 231 RSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNA 290
+ +G VH Y R ++ + L T L+DLY+KC VE A+ VF+S ++ + WNA
Sbjct: 253 QLGELEQGSIVHDYIKRNRIRVDSYLATGLVDLYAKCGCVETARDVFESCMEKYVFTWNA 312
Query: 291 MILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQ 350
M++G IHG+ ++ F+ +V+ V PD +T +GV+ C A L+ E R+ F +
Sbjct: 313 MLVGFAIHGEGSMVLEYFSRMVSEGV-----KPDGVTLLGVLVGCSHAGLVLEARRIFDE 367
Query: 351 MIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRF 410
M + Y +K HY CMA++ A A L EE E+++ MP D + W LL CR
Sbjct: 368 MENVYGVKREGKHYGCMADMLARAGLIEEGVEMVKAMPSGGDVFA-----WGGLLGGCRI 422
Query: 411 QGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRE-LMKKRRMGRMPGC 469
G V + ++ A+ +++ P+D Y + N+YA QW+D+ +VR L +R ++ G
Sbjct: 423 HGNVEVAKKAAQQVMEIKPEDGGVYSVMANIYAHTEQWDDLVKVRRSLSANKRAKKITGR 482
Query: 470 RLVDLKE 476
L+ L +
Sbjct: 483 SLIRLND 489
>gi|297742136|emb|CBI33923.3| unnamed protein product [Vitis vinifera]
Length = 461
Score = 263 bits (671), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 151/454 (33%), Positives = 237/454 (52%), Gaps = 74/454 (16%)
Query: 78 MIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFG- 136
M++ PN YTF L C + G + G H LK G + +L V NSLI+MY G
Sbjct: 1 MVRKCVAPNHYTFPLLVKVCWEIGSIGDGEKIHARILKFGFELDLFVRNSLIHMYSVCGR 60
Query: 137 ------------------------------AMDCARNMFVQMSPRDLISWNSIVSGHVRS 166
+ AR +F +M RDL SWNS+++G+V +
Sbjct: 61 IGDARAMFEVCSISDLVTWNSMIDGYVKNGEIGAARELFEEMPERDLFSWNSMIAGYVGN 120
Query: 167 GDMSAAH-------------------------------ELFDIMPERNVVSWNIMISGYS 195
GDM+AA ELF+ MP RNVVSWNIM++ Y
Sbjct: 121 GDMTAAEDLFNKMPFRDIVSWNCMIDGYAQVQNMEIACELFNWMPYRNVVSWNIMLALYV 180
Query: 196 KSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTS-LKPNI 254
+ + L++F +MM N+ T+ SVLTAC R + G+ +H Y ++P++
Sbjct: 181 RIKDYDECLRMFDKMMGETM-PNEATLVSVLTACAHLGRLDRGKWIHSYIKNNRVIEPDV 239
Query: 255 ILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNG 314
+L TAL+ +Y+KC +++A+ VFD M++R++V WN+MI+G+ +HG+ ++ +++F +
Sbjct: 240 LLSTALLTMYAKCGAMDLARDVFDKMSNRSVVSWNSMIMGYGMHGQADKALEMFLDM--- 296
Query: 315 TVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGA 374
P++ TFI V+ AC + ++ EG YF M YKI+P HY CM +L A
Sbjct: 297 --EKRGPMPNDATFICVLSACAHSGMILEGWWYFDLMRRAYKIEPKVEHYGCMVDLLGRA 354
Query: 375 ELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSR 434
L ++ EE++RKMP M + +W +LLS CR + E +AK ++++P+D
Sbjct: 355 GLMKDLEELIRKMP-----MEGGTALWGALLSACRTHSNSELAEIVAKRLIELEPRDIGP 409
Query: 435 YQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPG 468
Y L N+YA G+W+DV VR++MK+R + + G
Sbjct: 410 YLLLSNIYAAEGKWDDVEIVRKMMKERGLTKTTG 443
Score = 45.8 bits (107), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 50/203 (24%), Positives = 90/203 (44%), Gaps = 14/203 (6%)
Query: 27 LLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPN 86
LL A G+ D VF ++N N++I Y D+ + +L M K G MPN
Sbjct: 245 LLTMYAKCGAMDLARDVFDKMSNRSVVSWNSMIMGYGMHGQADKALEMFLDMEKRGPMPN 304
Query: 87 SYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMN--SLINMYGCFGAMDCARNM 144
TF+ + +CA +G + G L ++ E V + ++++ G G M +
Sbjct: 305 DATFICVLSACAHSGMILEGWWYFDL-MRRAYKIEPKVEHYGCMVDLLGRAGLMKDLEEL 363
Query: 145 FVQMSPRDLIS-WNSIVSGHVRSGDMS-----AAHELFDIMPERNVVSWNIMISGYSKSG 198
+M + W +++S R+ S A L ++ P R++ + ++ + Y+ G
Sbjct: 364 IRKMPMEGGTALWGALLSA-CRTHSNSELAEIVAKRLIELEP-RDIGPYLLLSNIYAAEG 421
Query: 199 NPGCSLKLFREMMKSGFRGNDKT 221
+++ R+MMK RG KT
Sbjct: 422 KWD-DVEIVRKMMKE--RGLTKT 441
>gi|293336578|ref|NP_001168380.1| uncharacterized protein LOC100382149 [Zea mays]
gi|223947871|gb|ACN28019.1| unknown [Zea mays]
gi|413955892|gb|AFW88541.1| hypothetical protein ZEAMMB73_254585 [Zea mays]
Length = 651
Score = 263 bits (671), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 140/431 (32%), Positives = 234/431 (54%), Gaps = 9/431 (2%)
Query: 43 VFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGC 102
VF + F A++ + + + + + + M + G+ + VS+ +CAK+G
Sbjct: 225 VFDGAEHRDAFTWTAMVSCFERNDLFMEALAVFSDMREEGWPVDEAVMVSVVAACAKSGV 284
Query: 103 VERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSG 162
++ G +CHGL ++ G+ + V N LI+MY + AR +F D SWNS++SG
Sbjct: 285 IQNGEVCHGLVVRAGLGSRVNVQNVLIHMYSSCQDVVAARRLFDNGESLDHFSWNSMISG 344
Query: 163 HVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTM 222
++++G + A LFD+MP+++ VSW+ MI+G + +L +F M + +D T+
Sbjct: 345 YLKNGRVEDAKALFDVMPDKDNVSWSAMIAGCVHNNQSSEALNVFDSMRAHEIKPDDVTL 404
Query: 223 ASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMAD 282
SV++AC + +G+ VH Y + I+L T+LID+Y KC +E A VFD + +
Sbjct: 405 VSVISACSNLSALEQGKLVHEYIRKYQYNITIVLGTSLIDMYMKCGCMEAALEVFDMLEE 464
Query: 283 RNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLT 342
+ CWNA+I+G ++G + +F+ + A G+ P+EITF GV+ AC L+
Sbjct: 465 KGTPCWNAVIVGLAMNGLVTRSLDMFSEM----EATGTAVPNEITFTGVLSACRHGGLVE 520
Query: 343 EGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWV 402
EGR++F+ M + Y+I PN HY CM +L A EAE++++ MP MS + W
Sbjct: 521 EGRQFFKLMQNKYQIVPNIRHYGCMVDLLGRAGYVREAEDMIQSMP-----MSPDVPAWG 575
Query: 403 SLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRR 462
+LL C G + ER+ K V +DP L N+YA G W+ V +R MK++
Sbjct: 576 ALLGACWKHGDSEVGERVGKKLVKLDPDHDGFQTMLSNIYASEGMWQCVKDLRGSMKQQH 635
Query: 463 MGRMPGCRLVD 473
+ ++ GC +V+
Sbjct: 636 VAKVAGCSMVE 646
Score = 157 bits (397), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 118/456 (25%), Positives = 189/456 (41%), Gaps = 77/456 (16%)
Query: 2 KQLLQIQAHLITSGLF-----------FNNSFWTINLLKHSADFGSPDYTVLVFKCINNP 50
+ LLQI A + SGL F S LL H +++ +F + +P
Sbjct: 18 RHLLQIHAQFLASGLLADAYAASRLLLFTTSATAARLLPHPLH-----HSLQLFGLVRSP 72
Query: 51 GTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCH 110
F N ++KA P Y M P++YT L +CA G V G H
Sbjct: 73 NAFTCNTLLKAALRQGFPHLCFPLYASMPA---APDTYTHPLLAAACAARGDVREGLQVH 129
Query: 111 GLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMS 170
++K+G L + N+L++MY G + AR +F D +SWN+I++ +VR GD+
Sbjct: 130 SHSVKHGFSDNLYLRNALMHMYSACGCVASARRVFDAGPVWDAVSWNTILATYVRDGDVE 189
Query: 171 AAHELFDIMPER-------------------------------NVVSWNIMISGYSKSGN 199
A ++F MPER + +W M+S + ++
Sbjct: 190 QAVKVFTRMPERSAAAVSAMVALFARRGMVEEARGVFDGAEHRDAFTWTAMVSCFERNDL 249
Query: 200 PGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTA 259
+L +F +M + G+ ++ M SV+ AC +S G HG VR L + +
Sbjct: 250 FMEALAVFSDMREEGWPVDEAVMVSVVAACAKSGVIQNGEVCHGLVVRAGLGSRVNVQNV 309
Query: 260 LIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLF----------- 308
LI +YS CQ V A+R+FD+ + WN+MI G+ +G+ E+ LF
Sbjct: 310 LIHMYSSCQDVVAARRLFDNGESLDHFSWNSMISGYLKNGRVEDAKALFDVMPDKDNVSW 369
Query: 309 TALVNGTVAGGS---------------ISPDEITFIGVICACVRAELLTEGRKYFRQMID 353
+A++ G V I PD++T + VI AC L +G K + I
Sbjct: 370 SAMIAGCVHNNQSSEALNVFDSMRAHEIKPDDVTLVSVISACSNLSALEQG-KLVHEYIR 428
Query: 354 FYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPE 389
Y+ + ++Y E A E+ + E
Sbjct: 429 KYQYNITIVLGTSLIDMYMKCGCMEAALEVFDMLEE 464
>gi|87241257|gb|ABD33115.1| SAM (and some other nucleotide) binding motif; Methyltransferase
small; Tetratricopeptide-like helical [Medicago
truncatula]
Length = 971
Score = 262 bits (670), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 134/412 (32%), Positives = 225/412 (54%), Gaps = 10/412 (2%)
Query: 70 QGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLI 129
+ + Y +M PN T + + SC++ + G H ++G++F +P+ N+L+
Sbjct: 242 EAIKIYKEMEAEKVRPNEITMIGMISSCSQVQDLNLGKEFHCYIKEHGLEFTIPLTNALM 301
Query: 130 NMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNI 189
+MY G + AR +F M+ + L+SW ++V G+ R G + A E+ +PE++VV WN
Sbjct: 302 DMYVKCGELLTARVLFDNMAQKTLVSWTTMVLGYARFGFLDVAREILYKIPEKSVVPWNA 361
Query: 190 MISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTS 249
+ISG ++ +L LF EM + TM + L+AC + + G +H Y R
Sbjct: 362 IISGCVQAKQGKEALALFHEMQIRTIEPDKVTMVNCLSACSQLGALDVGIWIHHYIERHK 421
Query: 250 LKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFT 309
L ++ L TAL+D+Y+KC + A +VF+ + RN + W A+I G +HG ++ + F+
Sbjct: 422 LSIDVALGTALVDMYAKCGNIARALQVFEEIPQRNCLTWTAVICGLALHGNAQDALSYFS 481
Query: 310 ALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMAN 369
+++ I PDEITF+GV+ AC L+ EGRKYF +M + + P HY CM +
Sbjct: 482 KMIH-----IGIVPDEITFLGVLSACCHGGLVEEGRKYFSEMSSKFNVSPKLKHYSCMVD 536
Query: 370 LYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDP 429
L A EEAEE+++ MP M+ ++ + +L CR G V + ER A +++DP
Sbjct: 537 LLGRAGHLEEAEELVKNMP-----MAADAAVLGALFFACRVYGNVQIGERTAFKLLEIDP 591
Query: 430 QDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLKEVVEKL 481
QD Y L ++Y+ A W++ R+LM + + + PGC LV++ +V +
Sbjct: 592 QDSGNYVLLASMYSEAKMWKEARSARKLMNDKGVEKTPGCSLVEINGIVHEF 643
Score = 135 bits (341), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 127/527 (24%), Positives = 226/527 (42%), Gaps = 106/527 (20%)
Query: 3 QLLQIQAHLITSGLFFNNSFWTINLLKHSADFGSP--DYTVLVFKCINNPGTFCVNAVIK 60
QL QIQA ++++GL N F L+ A S DY + I F NA I+
Sbjct: 72 QLKQIQAQMVSTGLI-ENGFAASRLVAFCALSESKELDYCTRILYRIKELNVFSWNAAIR 130
Query: 61 AYSNSCVPDQGVVFYLQMIKNGFM-PNSYTFVSLFGSCAK--TGCVERGGMCHGLALKNG 117
Y S + G + Y +M+ G + P+++T+ L C + C+ G + H LK G
Sbjct: 131 GYVESGDIEGGFMLYKRMLLGGTLKPDNHTYPLLLKGCCGQYSSCLGLGVLGH--VLKFG 188
Query: 118 VDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFD 177
+ ++ V N+ I M + C G++S A+++F+
Sbjct: 189 FECDIFVHNASITML-----LSC--------------------------GELSVAYDVFN 217
Query: 178 IMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNE 237
R++V+WN MI+G K G ++K+++EM R N+ TM ++++C + N
Sbjct: 218 KSRVRDLVTWNSMITGCVKRGLAIEAIKIYKEMEAEKVRPNEITMIGMISSCSQVQDLNL 277
Query: 238 GRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHC- 296
G+ H Y L+ I L AL+D+Y KC ++ A+ +FD+MA + LV W M+LG+
Sbjct: 278 GKEFHCYIKEHGLEFTIPLTNALMDMYVKCGELLTARVLFDNMAQKTLVSWTTMVLGYAR 337
Query: 297 ----------IHGKPEEGIKLFTALVNGTVAGG---------------SISPDEITFIGV 331
++ PE+ + + A+++G V +I PD++T +
Sbjct: 338 FGFLDVAREILYKIPEKSVVPWNAIISGCVQAKQGKEALALFHEMQIRTIEPDKVTMVNC 397
Query: 332 ICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDN 391
+ AC + L G + I+ +K+ + A + ++YA A ++ ++P+ N
Sbjct: 398 LSACSQLGALDVG-IWIHHYIERHKLSIDVALGTALVDMYAKCGNIARALQVFEEIPQRN 456
Query: 392 ------------------DNMSF-----------ESIMWVSLLSLCRFQGAVAMVERLAK 422
D +S+ + I ++ +LS C G +VE K
Sbjct: 457 CLTWTAVICGLALHGNAQDALSYFSKMIHIGIVPDEITFLGVLSACCHGG---LVEEGRK 513
Query: 423 SFVDMDPQ-----DFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMG 464
F +M + Y ++++ AG E+ EL+K M
Sbjct: 514 YFSEMSSKFNVSPKLKHYSCMVDLLGRAGHLEE---AEELVKNMPMA 557
>gi|224066034|ref|XP_002302000.1| predicted protein [Populus trichocarpa]
gi|222843726|gb|EEE81273.1| predicted protein [Populus trichocarpa]
Length = 797
Score = 262 bits (670), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 150/435 (34%), Positives = 227/435 (52%), Gaps = 18/435 (4%)
Query: 56 NAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALK 115
NA+I Y++ + + + +MI + + +TF S+ CA GC G H LK
Sbjct: 258 NAMISGYAHRGLYLEAFEMFRKMIMSKIQLDEFTFTSVISVCANAGCFRLGKEMHAYFLK 317
Query: 116 N----GVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSA 171
D +PV N+LI Y G +D A+ +F +M RDL+SWN I+SG+V M
Sbjct: 318 TVANPAPDVAMPVNNALITFYWKCGKVDIAQEIFNKMPERDLVSWNIILSGYVNVRCMDE 377
Query: 172 AHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGR 231
A F+ MPE+N++SW IMISG ++ G +LK F M GF D A + +C
Sbjct: 378 AKSFFNEMPEKNILSWIIMISGLAQIGFAEEALKFFNRMKLQGFEPCDYAFAGAIISCSV 437
Query: 232 SARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAM 291
GR +H VR + ++ ALI +Y++C V+ A +F +M + + WNAM
Sbjct: 438 LGSLKHGRQLHAQVVRYGYESSLSAGNALITMYARCGVVDAAHCLFINMPCVDAISWNAM 497
Query: 292 ILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQM 351
I HG+ + I+LF ++ I PD I+F+ VI AC A L+ EGRKYF M
Sbjct: 498 IAALGQHGQGTQAIELFEEMLK-----EGILPDRISFLTVISACSHAGLVKEGRKYFDSM 552
Query: 352 IDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFE--SIMWVSLLSLCR 409
+ Y + P+ HY + +L A EA+E++ MP FE + +W +LL+ CR
Sbjct: 553 HNVYGVNPDEEHYARIIDLLCRAGKFSEAKEVMESMP-------FEPGAPIWEALLAGCR 605
Query: 410 FQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGC 469
G + + A+ ++ PQ Y L N+YAVAGQW D+A+VR+LM+ R + + PGC
Sbjct: 606 IHGNIDLGIEAAERLFELKPQHDGTYVLLSNMYAVAGQWNDMAKVRKLMRDRGVKKEPGC 665
Query: 470 RLVDLKEVVEKLKVG 484
++++ V VG
Sbjct: 666 SWIEVENKVHSFLVG 680
Score = 157 bits (396), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 125/487 (25%), Positives = 223/487 (45%), Gaps = 75/487 (15%)
Query: 56 NAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERG-GMCHGLAL 114
NA+I AYS++ + + M ++ F P++YTF S+ G+ A E+ H +
Sbjct: 116 NAMITAYSHNHDGHAAIELFCDMQRDNFRPDNYTFTSVLGALALVAEKEKHCQQLHCAVV 175
Query: 115 KNGVDFELPVMNSLINMY-GCFGA--------MDCARNMFVQMSPRDLISWNSIVSGHVR 165
K+G F V+N+LI+ Y C + M AR +F +M RD +SW +I++G+V+
Sbjct: 176 KSGTGFVTSVLNALISSYVKCAASPSAQSSSLMAEARKLFDEMPNRDELSWTTIITGYVK 235
Query: 166 SGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASV 225
+ D+ AA E + ++ V+WN MISGY+ G + ++FR+M+ S + ++ T SV
Sbjct: 236 NNDLDAAKEFLNGTSKKLGVAWNAMISGYAHRGLYLEAFEMFRKMIMSKIQLDEFTFTSV 295
Query: 226 LTACGRSARFNEGRSVHGYTVRTSLKP----NIILDTALIDLYSKCQKVEVAQRVFDSMA 281
++ C + F G+ +H Y ++T P + ++ ALI Y KC KV++AQ +F+ M
Sbjct: 296 ISVCANAGCFRLGKEMHAYFLKTVANPAPDVAMPVNNALITFYWKCGKVDIAQEIFNKMP 355
Query: 282 DRNLVCWNAMILGHC-----------IHGKPEEGIKLFTALVNGTVAGG----------- 319
+R+LV WN ++ G+ + PE+ I + +++G G
Sbjct: 356 ERDLVSWNIILSGYVNVRCMDEAKSFFNEMPEKNILSWIIMISGLAQIGFAEEALKFFNR 415
Query: 320 ----SISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAE 375
P + F G I +C L GR+ Q++ Y + + + + +YA
Sbjct: 416 MKLQGFEPCDYAFAGAIISCSVLGSLKHGRQLHAQVVR-YGYESSLSAGNALITMYARCG 474
Query: 376 LTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQG----AVAMVERLAKSFVDMDPQD 431
+ + A + MP ++I W ++++ G A+ + E + K + D
Sbjct: 475 VVDAAHCLFINMP------CVDAISWNAMIAALGQHGQGTQAIELFEEMLKEGILPDRIS 528
Query: 432 F-----------------SRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDL 474
F + + NVY V E AR+ +L+ R G+ +
Sbjct: 529 FLTVISACSHAGLVKEGRKYFDSMHNVYGVNPDEEHYARIIDLLC--RAGKFS-----EA 581
Query: 475 KEVVEKL 481
KEV+E +
Sbjct: 582 KEVMESM 588
Score = 84.3 bits (207), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 77/328 (23%), Positives = 137/328 (41%), Gaps = 55/328 (16%)
Query: 110 HGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDM 169
H + +G ++N LI++Y ++ AR +F ++ D+++ ++++ + +GD+
Sbjct: 36 HAHMIASGFQPRGHILNRLIDIYSKSSKLNYARYLFDEIPQPDIVARTTLIAAYSAAGDL 95
Query: 170 SAAHELFDIMP--ERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLT 227
+ ++F P R+ V +N MI+ YS + + +++LF +M + FR ++ T SVL
Sbjct: 96 KLSRKIFSDTPLGMRDSVFYNAMITAYSHNHDGHAAIELFCDMQRDNFRPDNYTFTSVLG 155
Query: 228 ACGRSA-RFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEV---------AQRVF 277
A A + + +H V++ + ALI Y KC A+++F
Sbjct: 156 ALALVAEKEKHCQQLHCAVVKSGTGFVTSVLNALISSYVKCAASPSAQSSSLMAEARKLF 215
Query: 278 DSMADRNL-------------------------------VCWNAMILGHCIHGKPEEGIK 306
D M +R+ V WNAMI G+ G E +
Sbjct: 216 DEMPNRDELSWTTIITGYVKNNDLDAAKEFLNGTSKKLGVAWNAMISGYAHRGLYLEAFE 275
Query: 307 LFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRK---YFRQMIDFYKIKPNFAH 363
+F ++ I DE TF VI C A G++ YF + + P+ A
Sbjct: 276 MFRKMIM-----SKIQLDEFTFTSVISVCANAGCFRLGKEMHAYFLKTVA--NPAPDVAM 328
Query: 364 YW--CMANLYAGAELTEEAEEILRKMPE 389
+ Y + A+EI KMPE
Sbjct: 329 PVNNALITFYWKCGKVDIAQEIFNKMPE 356
>gi|449435364|ref|XP_004135465.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g40405-like [Cucumis sativus]
Length = 614
Score = 262 bits (669), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 152/489 (31%), Positives = 258/489 (52%), Gaps = 18/489 (3%)
Query: 1 MKQLLQIQAHLITSGLFFNNSFWTINLLKHSADFGSPD---YTVLVFKCINNPGTFCVNA 57
+K+L QI L+ +GL N + S +P Y+ + P F +N+
Sbjct: 22 LKELKQIHTQLVINGLLNNREL--LGQFVASIAVRNPTNLLYSNQILDQCAKPTLFALNS 79
Query: 58 VIKAYSNSCVPDQGVVFYLQMIK-NGFM-PNSYTFVSLFGSCAKTGCVERGGMCHGLALK 115
+I+AYS S P + FY ++++ N M P++YTF L +CA++ C E G HG +K
Sbjct: 80 MIRAYSKSLTPHKSFQFYNKILQSNDVMSPDNYTFNFLVRTCAQSAC-EAGPAVHGALIK 138
Query: 116 NGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHEL 175
+G +++ V + LI MY + +F + DL+ ++VS + GD+ A L
Sbjct: 139 HGFEYDPHVESGLIFMYAEMSCLSSCHRVFESVQKPDLVCQTTMVSACAKCGDIGFARNL 198
Query: 176 FDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARF 235
FD MP+R+ VSWN MI+GY++ G +L LF+ M G + N+ +M SV+TAC
Sbjct: 199 FDSMPQRDFVSWNAMIAGYAQRGQSREALNLFKLMQMDGVKVNEVSMISVVTACTHLGAL 258
Query: 236 NEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGH 295
++G+ H Y + ++ + L TAL+D+Y KC V+ A +VF M ++N+ W+ I G
Sbjct: 259 DQGKWAHAYIEKNKIQMTVNLGTALVDMYFKCGNVDRALKVFWEMNEKNVYTWSTAIGGL 318
Query: 296 CIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFY 355
++G ++ ++LF+ + + +A P+EITFI V+ C + EGR +F M +
Sbjct: 319 AMNGYGQKCLELFSFMKHEGIA-----PNEITFISVLKGCSVVGFVDEGRSHFDSMKRDH 373
Query: 356 KIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVA 415
I+P HY CM +LY A EEA + MP + + W +LL+ CR +
Sbjct: 374 GIEPRLEHYGCMVDLYGRAGRLEEALNFINTMP-----LKPHAGAWGALLNACRMYKNME 428
Query: 416 MVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLK 475
+ E ++ ++++ ++ Y L N+YA G W+ V+ VR+ MK + ++PGC ++++
Sbjct: 429 LGEFASRKLIEVEGKNHGAYVSLSNIYADTGNWDRVSNVRQSMKAEGISKLPGCSVMEVN 488
Query: 476 EVVEKLKVG 484
V + G
Sbjct: 489 GEVHEFFSG 497
>gi|449452775|ref|XP_004144134.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g56310-like [Cucumis sativus]
gi|449493602|ref|XP_004159370.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g56310-like [Cucumis sativus]
Length = 548
Score = 262 bits (669), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 140/482 (29%), Positives = 243/482 (50%), Gaps = 11/482 (2%)
Query: 3 QLLQIQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAY 62
L QI ++ L +N F + + G Y +F +P N IKA
Sbjct: 39 HLYQIHGFMLHRALDQDNLFLS-QFIDACTSLGLSSYAFSIFSNKTHPDLRLYNTAIKAL 97
Query: 63 SNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFEL 122
S + P + Y ++ +G P+SY+ S+ + K VE G H + + +D ++
Sbjct: 98 SKTSSPINAIWLYTRIRIDGLRPDSYSIPSVLKAVVKLSAVEVGRQIHTQTVSSALDMDV 157
Query: 123 PVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPER 182
V SLI MY G + AR +F + +D+ WN++V+G+V+ G++ +A ++F+ MP+R
Sbjct: 158 NVATSLIQMYSSCGFVSDARKLFDFVGFKDVALWNAMVAGYVKVGELKSARKVFNEMPQR 217
Query: 183 NVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVH 242
NV+SW +I+GY+++ P +++LFR+M ++ M +VL+AC G +H
Sbjct: 218 NVISWTTLIAGYAQTNRPHEAIELFRKMQLEEVEPDEIAMLAVLSACADLGALELGEWIH 277
Query: 243 GYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPE 302
Y + L + L ALID+Y+K + A VF++M ++++ W+ +I +HG
Sbjct: 278 NYIEKHGLCRIVSLYNALIDMYAKSGNIRRALEVFENMKQKSVITWSTVIAALALHGLGG 337
Query: 303 EGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFA 362
E I +F + V P+E+TF+ ++ AC ++ GR YF QM YKI+P
Sbjct: 338 EAIDMFLRMEKAKV-----RPNEVTFVAILSACSHVGMVDVGRYYFDQMQSMYKIEPKIE 392
Query: 363 HYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAK 422
HY CM +L A A +EA+++L MP + + M +W SLL+ + + K
Sbjct: 393 HYGCMIDLLARAGYLQEAQKLLHDMPFEANAM-----IWGSLLAASNTHRDAELAQLALK 447
Query: 423 SFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLKEVVEKLK 482
++P + Y L N YA G+W + VR+LM+ + + PG ++++ +V +
Sbjct: 448 HLAKLEPGNSGNYVLLSNTYAALGKWNESGTVRKLMRNAGVKKAPGGSVIEINNIVYEFL 507
Query: 483 VG 484
G
Sbjct: 508 AG 509
>gi|224124386|ref|XP_002330010.1| predicted protein [Populus trichocarpa]
gi|222871435|gb|EEF08566.1| predicted protein [Populus trichocarpa]
Length = 677
Score = 262 bits (669), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 153/520 (29%), Positives = 260/520 (50%), Gaps = 48/520 (9%)
Query: 2 KQLLQIQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKA 61
K L ++ + ++ N I L++ A G P YT +F I + N +I++
Sbjct: 52 KTLKKLHSKILIDQNLHPNPSLGIKLMRAYAACGEPCYTRHIFDEITDKNVVFFNVMIRS 111
Query: 62 YSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFE 121
Y N+ + ++ + M GF P++YT+ + +C+ +G + G HG +K G+D
Sbjct: 112 YVNNGLYQDALLVFKTMANQGFYPDNYTYPCVLKACSVSGNLWVGLQIHGAVVKLGLDMN 171
Query: 122 LPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAA--------- 172
L + N L++MYG +D AR + +M RD++SWNS+V+G+ ++G + A
Sbjct: 172 LYIGNGLVSMYGKCKWLDAARRVLDEMPGRDMVSWNSMVAGYAQNGRFNDALKLCREMED 231
Query: 173 ----------------------------HELFDIMPERNVVSWNIMISGYSKSGNPGCSL 204
++F + E++++SWN+MI+ Y + P ++
Sbjct: 232 LKLKPDAGTMGSLLPAVTNTSCDNVLYVKDMFVKLKEKSLISWNVMIAVYVNNAMPNEAV 291
Query: 205 KLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLY 264
L+ +M G + +++SVL ACG + GR +H Y R L+PN++L+ ALID+Y
Sbjct: 292 DLYLQMQVHGVEPDAVSISSVLPACGDLSAAVLGRRIHEYVERKKLRPNLLLENALIDMY 351
Query: 265 SKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPD 324
+KC ++ A+ VFD M R++V W +MI + + G+ ++ + LF + + +PD
Sbjct: 352 AKCGCLKEARAVFDQMMFRDVVSWTSMISAYGMSGQGKDAVALFKKMRD-----SGFTPD 406
Query: 325 EITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEIL 384
I F+ V+ AC A L+ EGR F M + Y I P HY CM +L A +EA +
Sbjct: 407 WIAFVSVLAACSHAGLVDEGRYCFNLMAE-YGITPGIEHYNCMVDLLGRAGKIDEAYHLT 465
Query: 385 RKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAV 444
R+MP M +W SLLS CR ++ + A + P+ Y L N+YA
Sbjct: 466 RQMP-----MEPNERVWGSLLSACRVYSSMNIALLAADHLFQLAPEQSGYYVLLSNIYAK 520
Query: 445 AGQWEDVARVRELMKKRRMGRMPGCRLVDLKEVVEKLKVG 484
AG+W+DV VR +M + + ++PG V++ + V G
Sbjct: 521 AGRWQDVETVRSIMNSKGIKKIPGNSNVEINDHVYTFLAG 560
>gi|357462829|ref|XP_003601696.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355490744|gb|AES71947.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 616
Score = 262 bits (669), Expect = 4e-67, Method: Compositional matrix adjust.
Identities = 157/497 (31%), Positives = 259/497 (52%), Gaps = 15/497 (3%)
Query: 6 QIQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSNS 65
++ A +I SGL ++ F L+ G + +F + V+ A + S
Sbjct: 29 KLHAQIIKSGLNHHHPF-PKTLIDAYGKCGLLKDALKLFDALPQQDHVAWATVLSACNLS 87
Query: 66 CVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCV--ERGGMCHGLALKNGVDFELP 123
+P + L ++ G P+ + F SL +CA G V + G H L + +
Sbjct: 88 NLPHKAFSISLPILHEGLQPDHFVFSSLIKACANLGSVHVKLGKQLHARFLLSPFFEDDV 147
Query: 124 VMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERN 183
V +SL++MY F D R +F + ISW +++SG+ RSG A ELF P +N
Sbjct: 148 VKSSLVDMYAKFELPDYGRAVFDSIFELSSISWTAMISGYARSGRKLEALELFRESPFKN 207
Query: 184 VVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDK-TMASVLTACGRSARFNEGRSVH 242
+ +W +ISG +SGN +L LF EM + G D ++SV+ AC SA G+ VH
Sbjct: 208 LYAWTALISGLVQSGNANDALYLFVEMRREGVSIADPLVLSSVVGACANSAVRELGKQVH 267
Query: 243 GYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPE 302
+ + + + AL+D+Y+KC V A+ +F M +++V W ++I+G HG E
Sbjct: 268 CVVITLGYESCLFISNALVDMYAKCSDVVAAKYIFCEMRRKDVVSWTSIIVGTAQHGLAE 327
Query: 303 EGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFA 362
E + L+ +V +AG + P+E+TF+G+I AC L+++GR F+ M++ + I+P+
Sbjct: 328 EALTLYDDMV---LAG--VKPNEVTFVGLIYACSHVGLVSKGRALFKSMVEDFGIRPSLQ 382
Query: 363 HYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAK 422
HY C+ +L++ + +EAE ++R MP D + W +LLS C+ G M R+A
Sbjct: 383 HYTCLLDLFSRSGHLDEAENLIRTMPVKPDEPT-----WAALLSACKHHGNTKMAVRIAD 437
Query: 423 SFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLKEVVEKLK 482
+D+ P+D S Y L N+YA AG WE+V+ VR+LM + + ++PG VDL +
Sbjct: 438 HLLDLKPEDPSSYILLSNIYAGAGMWENVSMVRKLMAVKEVKKVPGYSCVDLGREFQVFH 497
Query: 483 VGHFWRGGMKEEVNKMM 499
G + MK+E+ +M
Sbjct: 498 AGEASQ-PMKDEILGLM 513
Score = 47.0 bits (110), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 43/190 (22%), Positives = 82/190 (43%), Gaps = 19/190 (10%)
Query: 221 TMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSM 280
+ S L + GR F + +H +++ L + LID Y KC ++ A ++FD++
Sbjct: 11 ALKSQLFSLGRKNPFI-AKKLHAQIIKSGLNHHHPFPKTLIDAYGKCGLLKDALKLFDAL 69
Query: 281 ADRNLVCWNAMILGHC-IHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAE 339
++ V W A +L C + P + + +++ + PD F +I AC A
Sbjct: 70 PQQDHVAW-ATVLSACNLSNLPHKAFSISLPILH-----EGLQPDHFVFSSLIKAC--AN 121
Query: 340 LLTEGRKYFRQMIDFYKIKPNFAH---YWCMANLYAGAELTEEAEEILRKMPEDNDNMSF 396
L + K +Q+ + + P F + ++YA EL + + + E
Sbjct: 122 LGSVHVKLGKQLHARFLLSPFFEDDVVKSSLVDMYAKFELPDYGRAVFDSIFE------L 175
Query: 397 ESIMWVSLLS 406
SI W +++S
Sbjct: 176 SSISWTAMIS 185
>gi|10178273|emb|CAC08331.1| putative protein [Arabidopsis thaliana]
Length = 1280
Score = 262 bits (669), Expect = 4e-67, Method: Compositional matrix adjust.
Identities = 144/440 (32%), Positives = 247/440 (56%), Gaps = 14/440 (3%)
Query: 38 DYTVLVFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSC 97
DY +++P + N VI+ +SNS P++ + Y+QM++ G +P+ T+ L S
Sbjct: 805 DYAYKFLSKLSDPPNYGWNFVIRGFSNSRNPEKSISVYIQMLRFGLLPDHMTYPFLMKSS 864
Query: 98 AKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWN 157
++ + GG H +K+G++++L + N+LI+MYG F AR +F +M ++L++WN
Sbjct: 865 SRLSNRKLGGSLHCSVVKSGLEWDLFICNTLIHMYGSFRDQASARKLFDEMPHKNLVTWN 924
Query: 158 SIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSG-FR 216
SI+ + +SGD+ +A +FD M ER+VV+W+ MI GY K G +L++F +MM+ G +
Sbjct: 925 SILDAYAKSGDVVSARLVFDEMSERDVVTWSSMIDGYVKRGEYNKALEIFDQMMRMGSSK 984
Query: 217 GNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRV 276
N+ TM SV+ AC N G++VH Y + L +IL T+LID+Y+KC + A V
Sbjct: 985 ANEVTMVSVICACAHLGALNRGKTVHRYILDVHLPLTVILQTSLIDMYAKCGSIGDAWSV 1044
Query: 277 F--DSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICA 334
F S+ + + + WNA+I G HG E ++LF + I PDEITF+ ++ A
Sbjct: 1045 FYRASVKETDALMWNAIIGGLASHGFIRESLQLFHKMRE-----SKIDPDEITFLCLLAA 1099
Query: 335 CVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNM 394
C L+ E +F+ + + +P HY CM ++ + A L ++A + + +MP +
Sbjct: 1100 CSHGGLVKEAWHFFKSLKE-SGAEPKSEHYACMVDVLSRAGLVKDAHDFISEMP-----I 1153
Query: 395 SFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARV 454
M +LL+ C G + + E + K +++ P + RY L NVYA+ Q+ +
Sbjct: 1154 KPTGSMLGALLNGCINHGNLELAETVGKKLIELQPHNDGRYVGLANVYAINKQFRAARSM 1213
Query: 455 RELMKKRRMGRMPGCRLVDL 474
RE M+K+ + ++ G ++DL
Sbjct: 1214 REAMEKKGVKKIAGHSILDL 1233
Score = 85.5 bits (210), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 101/491 (20%), Positives = 195/491 (39%), Gaps = 75/491 (15%)
Query: 49 NPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGM 108
NP ++I S P + + + +M PN TF++L K G +
Sbjct: 681 NPDVITYTSLIHGLCASGRPSEAIFRWNEMKGKDCYPNRITFMALIQGLCKCGWSGEALV 740
Query: 109 CHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDL----ISWNSIVSGHV 164
+ ++ + V SL++ + ++ +F +M + + N +++ +V
Sbjct: 741 YFREMEEKEMEPDSAVYLSLVSSFLSSENINAGFGIFREMVHKGRFPVSVDRNYMLAVNV 800
Query: 165 RSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMAS 224
S D+ A++ + + WN +I G+S S NP S+ ++ +M++ G + T
Sbjct: 801 TS-DVDYAYKFLSKLSDPPNYGWNFVIRGFSNSRNPEKSISVYIQMLRFGLLPDHMTYPF 859
Query: 225 VLTACGRSARFNEGRSVHGYTVRTSLK-------------------------------PN 253
++ + R + G S+H V++ L+ N
Sbjct: 860 LMKSSSRLSNRKLGGSLHCSVVKSGLEWDLFICNTLIHMYGSFRDQASARKLFDEMPHKN 919
Query: 254 IILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVN 313
++ +++D Y+K V A+ VFD M++R++V W++MI G+ G+ + +++F ++
Sbjct: 920 LVTWNSILDAYAKSGDVVSARLVFDEMSERDVVTWSSMIDGYVKRGEYNKALEIFDQMMR 979
Query: 314 GTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMID-------------------- 353
GS +E+T + VICAC L G+ R ++D
Sbjct: 980 ----MGSSKANEVTMVSVICACAHLGALNRGKTVHRYILDVHLPLTVILQTSLIDMYAKC 1035
Query: 354 ---------FYK--IKPNFAHYW-CMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMW 401
FY+ +K A W + A E+ ++ KM E + + I +
Sbjct: 1036 GSIGDAWSVFYRASVKETDALMWNAIIGGLASHGFIRESLQLFHKMRE--SKIDPDEITF 1093
Query: 402 VSLLSLCRFQGAVAMVERLAKSFVDMDPQDFS-RYQFLLNVYAVAGQWEDVARVRELMKK 460
+ LL+ C G V KS + + S Y +++V + AG +D M
Sbjct: 1094 LCLLAACSHGGLVKEAWHFFKSLKESGAEPKSEHYACMVDVLSRAGLVKDAHDFISEMPI 1153
Query: 461 RRMGRMPGCRL 471
+ G M G L
Sbjct: 1154 KPTGSMLGALL 1164
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 73/333 (21%), Positives = 139/333 (41%), Gaps = 30/333 (9%)
Query: 50 PGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMC 109
P + ++ VI + D V +++NG +P + ++ K G E
Sbjct: 437 PDSDSLSIVINCLVKANKVDMAVTLLHDIVQNGLIPGPMMYNNIIEGMCKEGRSEESLKL 496
Query: 110 HGLALKNGVDFELPVMNSLINMYGCF-------GAMDCARNM-FVQMSPRDLISWNSIVS 161
G GV+ P +L +YGC GA+D + M F P + +V
Sbjct: 497 LGEMKDAGVE---PSQFTLNCIYGCLAERCDFVGALDLLKKMRFYGFEPW-IKHTTFLVK 552
Query: 162 GHVRSGD-MSAAHELFDIMPE---RNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRG 217
+G + A L D+ E ++V+ I G K+ L+LFR++ +G
Sbjct: 553 KLCENGRAVDACKYLDDVAGEGFLGHMVASTAAIDGLIKNEGVDRGLELFRDICANGHCP 612
Query: 218 NDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQ--- 274
+ ++ A ++ R E + V LKP + ++ID + C++ E+ +
Sbjct: 613 DVIAYHVLIKALCKACRTMEADILFNEMVSKGLKPTVATYNSMIDGW--CKEGEIDRGLS 670
Query: 275 ---RVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGV 331
R+++ + +++ + ++I G C G+P E I + + G P+ ITF+ +
Sbjct: 671 CIVRMYEDEKNPDVITYTSLIHGLCASGRPSEAIFRWNEM-----KGKDCYPNRITFMAL 725
Query: 332 ICACVRAELLTEGRKYFRQMIDFYKIKPNFAHY 364
I + E YFR+M + +++P+ A Y
Sbjct: 726 IQGLCKCGWSGEALVYFREM-EEKEMEPDSAVY 757
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 80/406 (19%), Positives = 158/406 (38%), Gaps = 30/406 (7%)
Query: 69 DQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSL 128
D+G+ + + NG P+ + L + K + + G+ + NS+
Sbjct: 596 DRGLELFRDICANGHCPDVIAYHVLIKALCKACRTMEADILFNEMVSKGLKPTVATYNSM 655
Query: 129 INMYGCFGAMD----CARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPER-- 182
I+ + G +D C M+ D+I++ S++ G SG S A ++ M +
Sbjct: 656 IDGWCKEGEIDRGLSCIVRMYEDEKNPDVITYTSLIHGLCASGRPSEAIFRWNEMKGKDC 715
Query: 183 --NVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRS 240
N +++ +I G K G G +L FREM + + S++++ S N G
Sbjct: 716 YPNRITFMALIQGLCKCGWSGEALVYFREMEEKEMEPDSAVYLSLVSSFLSSENINAGFG 775
Query: 241 VHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGK 300
+ V P + +D + + V+ A + ++D WN +I G
Sbjct: 776 IFREMVHKGRFP-VSVDRNYMLAVNVTSDVDYAYKFLSKLSDPPNYGWNFVIRGFSNSRN 834
Query: 301 PEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPN 360
PE+ I ++ ++ + PD +T+ ++ + R G ++ K
Sbjct: 835 PEKSISVYIQMLR-----FGLLPDHMTYPFLMKSSSRLSNRKLGGSLHCSVV---KSGLE 886
Query: 361 FAHYWC--MANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVE 418
+ + C + ++Y A ++ +MP N + W S+L G V
Sbjct: 887 WDLFICNTLIHMYGSFRDQASARKLFDEMPHKN------LVTWNSILDAYAKSGDVVSA- 939
Query: 419 RLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMG 464
RL F +M +D + +++ Y G++ + + M RMG
Sbjct: 940 RLV--FDEMSERDVVTWSSMIDGYVKRGEYNKALEIFDQM--MRMG 981
>gi|297819536|ref|XP_002877651.1| hypothetical protein ARALYDRAFT_485272 [Arabidopsis lyrata subsp.
lyrata]
gi|297323489|gb|EFH53910.1| hypothetical protein ARALYDRAFT_485272 [Arabidopsis lyrata subsp.
lyrata]
Length = 1217
Score = 262 bits (669), Expect = 4e-67, Method: Compositional matrix adjust.
Identities = 155/521 (29%), Positives = 260/521 (49%), Gaps = 48/521 (9%)
Query: 1 MKQLLQIQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIK 60
+K L + + +I+ L +N+S + L++ A VF I +N +I+
Sbjct: 56 LKTLRTVHSRIISEDLRYNSSLG-VKLMRAYASLKDVATARKVFDEIPERNVIIINVMIR 114
Query: 61 AYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDF 120
+Y N+ +G+ + M P+ YTF + +C+ +G + G HG A K G+
Sbjct: 115 SYVNNGFYREGIQVFGTMCSCHVKPDHYTFPCVLKACSCSGNIVIGKKIHGSATKVGLSS 174
Query: 121 ELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVR--------------- 165
L V N L++MYG G + AR + +MS RD++SWNS+V+G+ +
Sbjct: 175 TLFVGNGLVSMYGKCGFLSEARLVLDEMSRRDVVSWNSLVAGYAQNQRFDDALEVCREME 234
Query: 166 -------SGDMSA---------------AHELFDIMPERNVVSWNIMISGYSKSGNPGCS 203
+G M++ ++F M ++++VSWN+MI Y K+ P +
Sbjct: 235 SVKISHDAGTMASLLPAVSNTTTENVMYVKDMFFKMGKKSLVSWNVMIGVYMKNAMPVEA 294
Query: 204 LKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDL 263
++L+ M GF + ++ SVL ACG ++ + G+ +HGY R L PN++L+ ALID+
Sbjct: 295 VELYSGMEADGFEPDAVSITSVLPACGDTSALSLGKKIHGYIERKKLIPNLLLENALIDM 354
Query: 264 YSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISP 323
Y+KC ++ A+ VF++M R++V W AMI + G+ + + LF+ + + + P
Sbjct: 355 YAKCGCLDRARDVFENMKSRDVVSWTAMISAYGFSGRGCDAVALFSKMQD-----SGLVP 409
Query: 324 DEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEI 383
D I F+ + AC A LL EGR F+ M D YKI P H CM +L A +EA +
Sbjct: 410 DSIAFVTTLAACSHAGLLEEGRSCFKLMTDHYKITPRLEHLACMVDLLGRAGKVKEAYKF 469
Query: 384 LRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYA 443
+++MP M +W +LL CR + A + P+ Y L N+YA
Sbjct: 470 IQEMP-----MEPNERVWGALLGACRVHSNTDIGLLAADKLFQLAPEQSGYYVLLSNIYA 524
Query: 444 VAGQWEDVARVRELMKKRRMGRMPGCRLVDLKEVVEKLKVG 484
AG+WE+V +R +MK + + + PG V++ ++ VG
Sbjct: 525 KAGRWEEVTNIRNIMKSKGLKKNPGASNVEVNRIIHTFLVG 565
>gi|356546516|ref|XP_003541672.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g21065-like [Glycine max]
Length = 591
Score = 262 bits (669), Expect = 4e-67, Method: Compositional matrix adjust.
Identities = 151/483 (31%), Positives = 246/483 (50%), Gaps = 42/483 (8%)
Query: 3 QLLQIQAHLITSGLFFNNSFWTINLLKHSADFGSP-DYTVLVFKCINNPGTFCVNAVIKA 61
+L QI A I G+ NN +L+ +P Y VF I+NP F N +I+
Sbjct: 33 KLKQIHAFSIRHGVSLNNPDMGKHLIFTIVSLSAPMSYAYNVFTVIHNPNVFTWNTIIRG 92
Query: 62 YSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFE 121
Y+ S P +FY QM+ + P+++T+ L + +K+ V G H + ++NG +
Sbjct: 93 YAESDNPSPAFLFYRQMVVSCVEPDTHTYPFLLKAISKSLNVREGEAIHSVTIRNGFESL 152
Query: 122 LPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPE 181
+ V NSL+++Y GD +A+++F++M E
Sbjct: 153 VFVQNSLLHIYAA-------------------------------CGDTESAYKVFELMKE 181
Query: 182 RNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSV 241
R++V+WN MI+G++ +G P +L LFREM G + T+ S+L+A GR V
Sbjct: 182 RDLVAWNSMINGFALNGRPNEALTLFREMSVEGVEPDGFTVVSLLSASAELGALELGRRV 241
Query: 242 HGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKP 301
H Y ++ L N + +L+DLY+KC + AQRVF M++RN V W ++I+G ++G
Sbjct: 242 HVYLLKVGLSKNSHVTNSLLDLYAKCGAIREAQRVFSEMSERNAVSWTSLIVGLAVNGFG 301
Query: 302 EEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNF 361
EE ++LF + G + P EITF+GV+ AC +L EG +YFR+M + I P
Sbjct: 302 EEALELFKEM-----EGQGLVPSEITFVGVLYACSHCGMLDEGFEYFRRMKEECGIIPRI 356
Query: 362 AHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLA 421
HY CM +L + A L ++A E ++ MP + +++W +LL C G + + E
Sbjct: 357 EHYGCMVDLLSRAGLVKQAYEYIQNMPVQPN-----AVIWRTLLGACTIHGHLGLGEIAR 411
Query: 422 KSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLKEVVEKL 481
++++P+ Y L N+YA +W DV +R M K + + PG LV+L V +
Sbjct: 412 SHLLNLEPKHSGDYVLLSNLYASERRWSDVQVIRRSMLKDGVKKTPGYSLVELGNRVYEF 471
Query: 482 KVG 484
+G
Sbjct: 472 TMG 474
>gi|413934265|gb|AFW68816.1| hypothetical protein ZEAMMB73_462632 [Zea mays]
Length = 648
Score = 261 bits (668), Expect = 4e-67, Method: Compositional matrix adjust.
Identities = 141/430 (32%), Positives = 234/430 (54%), Gaps = 12/430 (2%)
Query: 56 NAVIKAYSNSCVPDQGVVFYLQMIKNG--FMPNSYTFVSLFGSCAKTGCVERGGMCHGLA 113
N +I Y S +P + + + ++ ++G P+ T + CA+ G +E G H
Sbjct: 191 NTLIGGYVRSGLPREALELFWRLAEDGNAVRPDEVTVIGAVSGCAQMGDLELGKRLHEFV 250
Query: 114 LKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAH 173
GV + +MN++++MY G+++ A ++F ++S R +SW +++ GH R G M A
Sbjct: 251 DNKGVRCTVRLMNAVMDMYVKCGSLELANSVFERISNRTAVSWTTMIVGHARLGMMEDAR 310
Query: 174 ELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSA 233
LFD MPER+V WN +++GY ++ ++ LF EM KS N+ TM ++L+AC +
Sbjct: 311 MLFDEMPERDVFPWNALMAGYVQNKQGKEAIALFHEMQKSKVDPNEITMVNLLSACSQLG 370
Query: 234 RFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMIL 293
G VH Y R L ++ L T+L+D+Y+KC ++ A VF+ + +N + W +MI
Sbjct: 371 ALEMGMWVHHYIDRHKLHLSVALGTSLVDMYAKCGNIKKAICVFNEIPVQNALTWTSMIC 430
Query: 294 GHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMID 353
G HG +E I+ F +++ + PDEITFIGV+ AC A L+ GR++F M
Sbjct: 431 GLANHGHADEAIEYFQRMID-----LGLQPDEITFIGVLSACCHAGLVEAGRQFFSLMHA 485
Query: 354 FYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGA 413
Y ++ HY CM +L A +EAE+++ MP D D +++W +L CR G
Sbjct: 486 KYHLERKMKHYSCMIDLLGRAGHLDEAEQLVNAMPMDPD-----AVVWGALFFACRMHGN 540
Query: 414 VAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVD 473
+ + E+ A V++DP D Y L N+YA A + +VR +M+ + ++PGC ++
Sbjct: 541 ITLGEKAAMKLVELDPSDSGIYVLLANMYAEANMRKKADKVRVMMRHLGVEKVPGCSCIE 600
Query: 474 LKEVVEKLKV 483
L VV + V
Sbjct: 601 LNGVVHEFIV 610
Score = 116 bits (291), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 107/447 (23%), Positives = 191/447 (42%), Gaps = 82/447 (18%)
Query: 2 KQLLQIQAHLITSGLFFNNSFWT-----INLLKHSADFGSPD---YTVLVFKCINNP--G 51
+ LL++ AH + SGL ++S + HS D SP + + + + +P
Sbjct: 22 RVLLKLHAHHLVSGLLSSHSTSPFIDRLVAAFAHS-DPASPRPLLHALAILASLPSPPDS 80
Query: 52 TFCVNAVIKAYSNSCVPDQGVV------FYLQMIKNGFM-PNSYTFVSLFGSCAKTGCVE 104
F NA +A S P Q +V Y ++ +G P+ TF L +CA+
Sbjct: 81 AFPYNAAFRALS--LCPHQHLVDRHCLPLYRALLHSGSARPDHLTFPFLIKACARLQYRS 138
Query: 105 RGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHV 164
G G K G ++ V+N+ ++ + G M AR +F + RD++SWN+++ G+V
Sbjct: 139 YGAAVLGHVQKLGFSADVFVVNAAMHFWSVRGPMAFARRLFDESPVRDVVSWNTLIGGYV 198
Query: 165 RSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMAS 224
RSG A ELF W + ++ GN R ++ T+
Sbjct: 199 RSGLPREALELF----------WRL-----AEDGN--------------AVRPDEVTVIG 229
Query: 225 VLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRN 284
++ C + G+ +H + ++ + L A++D+Y KC +E+A VF+ +++R
Sbjct: 230 AVSGCAQMGDLELGKRLHEFVDNKGVRCTVRLMNAVMDMYVKCGSLELANSVFERISNRT 289
Query: 285 LVCWNAMILGHCIHGKPEEGIKLF-----------TALVNGTVAG--------------- 318
V W MI+GH G E+ LF AL+ G V
Sbjct: 290 AVSWTTMIVGHARLGMMEDARMLFDEMPERDVFPWNALMAGYVQNKQGKEAIALFHEMQK 349
Query: 319 GSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTE 378
+ P+EIT + ++ AC + L G + ID +K+ + A + ++YA +
Sbjct: 350 SKVDPNEITMVNLLSACSQLGALEMG-MWVHHYIDRHKLHLSVALGTSLVDMYAKCGNIK 408
Query: 379 EAEEILRKMPEDNDNMSFESIMWVSLL 405
+A + ++P N ++ W S++
Sbjct: 409 KAICVFNEIPVQN------ALTWTSMI 429
Score = 74.3 bits (181), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 61/292 (20%), Positives = 123/292 (42%), Gaps = 34/292 (11%)
Query: 23 WTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNG 82
WT ++ H A G + ++F + F NA++ Y + + + + +M K+
Sbjct: 293 WTTMIVGH-ARLGMMEDARMLFDEMPERDVFPWNALMAGYVQNKQGKEAIALFHEMQKSK 351
Query: 83 FMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCAR 142
PN T V+L +C++ G +E G H ++ + + + SL++MY G + A
Sbjct: 352 VDPNEITMVNLLSACSQLGALEMGMWVHHYIDRHKLHLSVALGTSLVDMYAKCGNIKKAI 411
Query: 143 NMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGC 202
+F ++ ++ ++W S MI G + G+
Sbjct: 412 CVFNEIPVQNALTWTS-------------------------------MICGLANHGHADE 440
Query: 203 SLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYT-VRTSLKPNIILDTALI 261
+++ F+ M+ G + ++ T VL+AC + GR + L+ + + +I
Sbjct: 441 AIEYFQRMIDLGLQPDEITFIGVLSACCHAGLVEAGRQFFSLMHAKYHLERKMKHYSCMI 500
Query: 262 DLYSKCQKVEVAQRVFDSMA-DRNLVCWNAMILGHCIHGKPEEGIKLFTALV 312
DL + ++ A+++ ++M D + V W A+ +HG G K LV
Sbjct: 501 DLLGRAGHLDEAEQLVNAMPMDPDAVVWGALFFACRMHGNITLGEKAAMKLV 552
>gi|110741623|dbj|BAE98759.1| hypothetical protein [Arabidopsis thaliana]
Length = 504
Score = 261 bits (668), Expect = 5e-67, Method: Compositional matrix adjust.
Identities = 145/432 (33%), Positives = 233/432 (53%), Gaps = 12/432 (2%)
Query: 39 YTVLVFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCA 98
Y +F N TF N +I+AY P + +V Y + +G P+ +TF +F + A
Sbjct: 27 YARKLFDHHQNSCTFLYNKLIQAYYVHHQPHESIVLYNLLSFDGLRPSHHTFNFIFAASA 86
Query: 99 KTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNS 158
+ H ++G + + +LI Y GA+ CAR +F +MS RD+ WN+
Sbjct: 87 SFSSARPLRLLHSQFFRSGFESDSFCCTTLITAYAKLGALCCARRVFDEMSKRDVPVWNA 146
Query: 159 IVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKS-GFRG 217
+++G+ R GDM AA ELFD MP +NV SW +ISG+S++GN +LK+F M K +
Sbjct: 147 MITGYQRRGDMKAAMELFDSMPRKNVTSWTTVISGFSQNGNYSEALKMFLCMEKDKSVKP 206
Query: 218 NDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVF 277
N T+ SVL AC GR + GY NI + A I++YSKC ++VA+R+F
Sbjct: 207 NHITVVSVLPACANLGELEIGRRLEGYARENGFFDNIYVCNATIEMYSKCGMIDVAKRLF 266
Query: 278 DSMAD-RNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACV 336
+ + + RNL WN+MI HGK +E + LF ++ PD +TF+G++ ACV
Sbjct: 267 EELGNQRNLCSWNSMIGSLATHGKHDEALTLFAQMLR-----EGEKPDAVTFVGLLLACV 321
Query: 337 RAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSF 396
++ +G++ F+ M + +KI P HY CM +L +EA ++++ MP M
Sbjct: 322 HGGMVVKGQELFKSMEEVHKISPKLEHYGCMIDLLGRVGKLQEAYDLIKTMP-----MKP 376
Query: 397 ESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRE 456
++++W +LL C F G V + E +++ ++P + + N+YA +W+ V R+R+
Sbjct: 377 DAVVWGTLLGACSFHGNVEIAEIASEALFKLEPTNPGNCVIMSNIYAANEKWDGVLRMRK 436
Query: 457 LMKKRRMGRMPG 468
LMKK M + G
Sbjct: 437 LMKKETMTKAAG 448
>gi|296087368|emb|CBI33742.3| unnamed protein product [Vitis vinifera]
Length = 562
Score = 261 bits (667), Expect = 6e-67, Method: Compositional matrix adjust.
Identities = 141/427 (33%), Positives = 230/427 (53%), Gaps = 52/427 (12%)
Query: 110 HGLALKNGVDFELPVMN-SLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGD 168
H + ++G+D P++N L Y G +D + +F + + W +I+ GH GD
Sbjct: 50 HAVLFRHGLDHH-PILNFKLQRSYASLGRLDYSVALFGRTQNPSVFFWTAIIHGHALRGD 108
Query: 169 MSAAHELFDIMPERNVVS-------------------------------WNIMISGYSKS 197
+ +A +LFD MPE+++VS WN+MI GY+++
Sbjct: 109 VVSAQQLFDTMPEKSLVSLTAMLTCYAKHGELDAARVLFDGMEERDGVCWNVMIDGYTQN 168
Query: 198 GNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILD 257
G P +L LFR M+K+ + N+ T+ SVL+ACG+ GR VH Y ++ N+ +
Sbjct: 169 GMPNEALVLFRRMLKAKAKPNEVTVLSVLSACGQLGALESGRWVHSYIENNGIQFNVHVG 228
Query: 258 TALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVA 317
TAL+D+YSKC +E A+ VFD + D+++V WN+MI+G+ +HG +E ++LF ++
Sbjct: 229 TALVDMYSKCGSLEDARLVFDKIDDKDVVAWNSMIVGYAMHGFSQEALQLFKSMCR---- 284
Query: 318 GGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELT 377
+ P ITFIG++ AC + +TEG F +M D Y I+P HY CM NL A
Sbjct: 285 -MGLHPTNITFIGILSACGHSGWVTEGWDIFNKMKDEYGIEPKIEHYGCMVNLLGRAGHV 343
Query: 378 EEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQF 437
E+A E+++ M N+ + ++W +LL CR G +A+ E++ + VD + + Y
Sbjct: 344 EQAYELVKNM-----NIEPDPVLWGTLLGACRLHGKIALGEKIVELLVDQNLANSGTYIL 398
Query: 438 LLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLKEVVEKLKVGHFWRGGM----KE 493
L N+YA G W+ VAR+R +MK + + PGC +++ KV F GG+ ++
Sbjct: 399 LSNIYAAVGNWDGVARLRTMMKDSGVKKEPGCSSIEVNN-----KVHEFLAGGLNHPKRK 453
Query: 494 EVNKMME 500
E+ M+E
Sbjct: 454 EIYMMLE 460
Score = 108 bits (270), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 74/289 (25%), Positives = 132/289 (45%), Gaps = 35/289 (12%)
Query: 32 ADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFV 91
A G D ++F + C N +I Y+ + +P++ +V + +M+K PN T +
Sbjct: 135 AKHGELDAARVLFDGMEERDGVCWNVMIDGYTQNGMPNEALVLFRRMLKAKAKPNEVTVL 194
Query: 92 SLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPR 151
S+ +C + G +E G H NG+ F + V +L++MY G+++ AR +F ++ +
Sbjct: 195 SVLSACGQLGALESGRWVHSYIENNGIQFNVHVGTALVDMYSKCGSLEDARLVFDKIDDK 254
Query: 152 DLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMM 211
D+++WNS MI GY+ G +L+LF+ M
Sbjct: 255 DVVAWNS-------------------------------MIVGYAMHGFSQEALQLFKSMC 283
Query: 212 KSGFRGNDKTMASVLTACGRSARFNEGRSV-HGYTVRTSLKPNIILDTALIDLYSKCQKV 270
+ G + T +L+ACG S EG + + ++P I +++L + V
Sbjct: 284 RMGLHPTNITFIGILSACGHSGWVTEGWDIFNKMKDEYGIEPKIEHYGCMVNLLGRAGHV 343
Query: 271 EVAQRVFDSM-ADRNLVCWNAMILGHC-IHGKPEEGIKLFTALVNGTVA 317
E A + +M + + V W + LG C +HGK G K+ LV+ +A
Sbjct: 344 EQAYELVKNMNIEPDPVLWGTL-LGACRLHGKIALGEKIVELLVDQNLA 391
>gi|347954526|gb|AEP33763.1| organelle transcript processing 82, partial [Isatis tinctoria]
Length = 671
Score = 261 bits (667), Expect = 6e-67, Method: Compositional matrix adjust.
Identities = 142/431 (32%), Positives = 228/431 (52%), Gaps = 43/431 (9%)
Query: 56 NAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALK 115
NA+I Y+ + + + + +M+K P+ T+V++ +CA +G +E G H
Sbjct: 165 NAMISGYAETGCYKEALELFEEMMKMNVRPDESTYVTVLSACAHSGSIELGRQVHSWVDD 224
Query: 116 NGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHEL 175
+G D L ++N+LI++Y + G++ A L
Sbjct: 225 HGFDSNLKIVNALIDLYS-------------------------------KCGEVETACGL 253
Query: 176 FDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARF 235
F + ++V+SWN +I GY+ +L LF+EM++SG ND TM SVL AC
Sbjct: 254 FQGLSYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSVLPACAHLGAI 313
Query: 236 NEGRSVHGYTVR--TSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMIL 293
+ GR +H Y + + L T+LID+Y+KC +E A +VF+SM ++L WNAMI
Sbjct: 314 DIGRWIHVYIDKRLKGVTNASSLRTSLIDMYAKCGDIEAAHQVFNSMLHKSLSSWNAMIF 373
Query: 294 GHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMID 353
G +HG+ + LF+ + I PD+ITF+G++ AC + +L GR FR M
Sbjct: 374 GFAMHGRADASFDLFSRMRKI-----GIEPDDITFVGLLSACSHSGMLDLGRHIFRSMTQ 428
Query: 354 FYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGA 413
YK+ P HY CM +L + L +EAEE++ M M + ++W SLL C+ G
Sbjct: 429 DYKMTPKLEHYGCMIDLLGHSGLFKEAEEMINTM-----EMEPDGVIWCSLLKACKMHGN 483
Query: 414 VAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVD 473
V + E A++ + ++P++ S Y L N+YA AG+WEDVAR+R L+ + M ++PGC ++
Sbjct: 484 VELAESFAQNLIKIEPENPSSYILLSNIYASAGRWEDVARIRALLNGKCMKKVPGCSSIE 543
Query: 474 LKEVVEKLKVG 484
+ VV + VG
Sbjct: 544 VDSVVFEFVVG 554
Score = 206 bits (523), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 112/321 (34%), Positives = 175/321 (54%), Gaps = 5/321 (1%)
Query: 25 INLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFM 84
I L S F Y VF+ I P N +I+ ++ S P + Y+ M+ G +
Sbjct: 2 IELCVPSPHFDGLPYATSVFETIQEPNQLIWNTMIRGHALSSDPVSSLTLYVCMVSLGLL 61
Query: 85 PNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNM 144
PNSYTF L SCAK+ G HG LK G D +L V SLI+MY ++ A +
Sbjct: 62 PNSYTFPFLLKSCAKSKTFTEGQQIHGQVLKLGFDLDLYVHTSLISMYVQNWRLEDAYKV 121
Query: 145 FVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSL 204
F + S RD++S+ ++++G+ GD+ +A +LFD +P ++VVSWN MISGY+++G +L
Sbjct: 122 FDRSSHRDVVSYTALITGYASRGDIRSAQKLFDEIPVKDVVSWNAMISGYAETGCYKEAL 181
Query: 205 KLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLY 264
+LF EMMK R ++ T +VL+AC S GR VH + N+ + ALIDLY
Sbjct: 182 ELFEEMMKMNVRPDESTYVTVLSACAHSGSIELGRQVHSWVDDHGFDSNLKIVNALIDLY 241
Query: 265 SKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPD 324
SKC +VE A +F ++ ++++ WN +I G+ +E + LF ++ +P+
Sbjct: 242 SKCGEVETACGLFQGLSYKDVISWNTLIGGYTHMNLYKEALLLFQEMLR-----SGETPN 296
Query: 325 EITFIGVICACVRAELLTEGR 345
++T + V+ AC + GR
Sbjct: 297 DVTMLSVLPACAHLGAIDIGR 317
Score = 98.2 bits (243), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 62/235 (26%), Positives = 109/235 (46%), Gaps = 27/235 (11%)
Query: 172 AHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGR 231
A +F+ + E N + WN MI G++ S +P SL L+ M+ G N T +L +C +
Sbjct: 17 ATSVFETIQEPNQLIWNTMIRGHALSSDPVSSLTLYVCMVSLGLLPNSYTFPFLLKSCAK 76
Query: 232 SARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAM 291
S F EG+ +HG ++ ++ + T+LI +Y + ++E A +VFD + R++V + A+
Sbjct: 77 SKTFTEGQQIHGQVLKLGFDLDLYVHTSLISMYVQNWRLEDAYKVFDRSSHRDVVSYTAL 136
Query: 292 ILGHCIHGKPEEGIKLF-----------TALVNGTVAGG---------------SISPDE 325
I G+ G KLF A+++G G ++ PDE
Sbjct: 137 ITGYASRGDIRSAQKLFDEIPVKDVVSWNAMISGYAETGCYKEALELFEEMMKMNVRPDE 196
Query: 326 ITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEA 380
T++ V+ AC + + GR+ +D + N + +LY+ E A
Sbjct: 197 STYVTVLSACAHSGSIELGRQ-VHSWVDDHGFDSNLKIVNALIDLYSKCGEVETA 250
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 61/264 (23%), Positives = 110/264 (41%), Gaps = 35/264 (13%)
Query: 43 VFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGC 102
+F+ ++ N +I Y++ + + ++ + +M+++G PN T +S+ +CA G
Sbjct: 253 LFQGLSYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSVLPACAHLGA 312
Query: 103 VERGGMCHGLALK--NGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIV 160
++ G H K GV + SLI+MY G ++ A +F M + L SWN+
Sbjct: 313 IDIGRWIHVYIDKRLKGVTNASSLRTSLIDMYAKCGDIEAAHQVFNSMLHKSLSSWNA-- 370
Query: 161 SGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDK 220
MI G++ G S LF M K G +D
Sbjct: 371 -----------------------------MIFGFAMHGRADASFDLFSRMRKIGIEPDDI 401
Query: 221 TMASVLTACGRSARFNEGRSV-HGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDS 279
T +L+AC S + GR + T + P + +IDL + A+ + ++
Sbjct: 402 TFVGLLSACSHSGMLDLGRHIFRSMTQDYKMTPKLEHYGCMIDLLGHSGLFKEAEEMINT 461
Query: 280 MA-DRNLVCWNAMILGHCIHGKPE 302
M + + V W +++ +HG E
Sbjct: 462 MEMEPDGVIWCSLLKACKMHGNVE 485
>gi|449437256|ref|XP_004136408.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g48910-like [Cucumis sativus]
Length = 632
Score = 261 bits (667), Expect = 6e-67, Method: Compositional matrix adjust.
Identities = 150/489 (30%), Positives = 259/489 (52%), Gaps = 15/489 (3%)
Query: 1 MKQLLQIQAHLITSGL-FFNNSFWTINLLKHSADFGSPDYTVLVFK-CINNPGTFCVNAV 58
M+QL +IQA +I S + + + + + S+ G+ ++VL+F ++ P F NA+
Sbjct: 37 MRQLFEIQAQIIASPIPSIDPNIIAVKFIGVSSSHGNLRHSVLIFNHFLSFPNIFAYNAL 96
Query: 59 IKAYSNSCVPDQGVVFYLQ--MIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKN 116
+KA+S + ++ ++ N P+ YTF S+ +CA V G H K
Sbjct: 97 LKAFSQHNAWHTTISYFNNQLVLPNAPNPDEYTFTSVLKACAGLAQVLEGQKVHCFVTKY 156
Query: 117 GVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELF 176
G + L V NSL+++Y G A+ +F +M RD++SWN+++SG+ SG + A +F
Sbjct: 157 GCESNLFVRNSLVDLYFKVGCNCIAQKLFDEMVVRDVVSWNTLISGYCFSGMVDKARMVF 216
Query: 177 DIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMM-KSGFRGNDKTMASVLTACGRSARF 235
D M E+N+VSW+ MISGY+++ +++LFR+M + G ND T+ SVL+AC
Sbjct: 217 DGMMEKNLVSWSTMISGYARNEKYADAIELFRQMQHEGGLAPNDVTLVSVLSACAHLGAL 276
Query: 236 NEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGH 295
+ G+ +H + R ++ + L AL D+Y+KC V A+ VF M +R+++ W+ +I+G
Sbjct: 277 DLGKWIHRFIRRNKIEVGLFLGNALADMYAKCGCVLEAKGVFHEMHERDVISWSIIIMGL 336
Query: 296 CIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFY 355
++G E F ++ + P++I+F+G++ AC A L+ +G +YF M Y
Sbjct: 337 AMYGYANEAFNFFAEMIE-----DGLEPNDISFMGLLTACTHAGLVDKGLEYFDMMPQVY 391
Query: 356 KIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVA 415
I P HY C+ +L + A ++AE ++ MP M I+W +LL CR
Sbjct: 392 GITPKIEHYGCVVDLLSRAGRLDQAESLINSMP-----MQPNVIVWGALLGGCRIYKDAE 446
Query: 416 MVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLK 475
ER+ +++D +L NVYA G+ +D A R M+ + + PGC +++
Sbjct: 447 RGERVVWRILELDSNHSGSLVYLANVYASMGRLDDAASCRLRMRDNKSMKTPGCSWIEIN 506
Query: 476 EVVEKLKVG 484
V + +G
Sbjct: 507 NSVYEFFMG 515
>gi|359484088|ref|XP_002263394.2| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic [Vitis vinifera]
Length = 762
Score = 261 bits (667), Expect = 6e-67, Method: Compositional matrix adjust.
Identities = 165/565 (29%), Positives = 272/565 (48%), Gaps = 82/565 (14%)
Query: 1 MKQLLQIQAHLITSGLFFNNSFWTINLLKHSADFGSPD---YTVLVFKCINNPGTFCVNA 57
++ L Q+ A +IT N+ F L SA P Y +F + NP N+
Sbjct: 109 LRHLKQVHAQIIT---HHNSPFQLSALASLSALSPFPTFLAYAKTIFHHLQNPPPSLYNS 165
Query: 58 VIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTF-----------VSLFGSCAKTGCVERG 106
+I+A S+S P + + Y M+++G P+ T+ V+ FG T V+ G
Sbjct: 166 LIRALSSSKTPLEALPLYHTMLQSGLKPDHMTYPFVIKACNESSVTWFGLLVHTHVVKSG 225
Query: 107 GMCHGLALK-------NGVDF--------------------------------------- 120
C + NG D
Sbjct: 226 FECDSYIVSSLIHLYANGKDLGAAKQLFNLCSARDVVSWNAMIDGYVKHVEMGHARMVFD 285
Query: 121 -----ELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHEL 175
++ N++IN Y G +D A+ +F +M R+L+SWNS+++G V+ G++ A L
Sbjct: 286 RMVCRDVISWNTMINGYAIVGKIDEAKRLFDEMPERNLVSWNSMLAGFVKCGNVEDAFGL 345
Query: 176 FDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARF 235
F MP R+VVSWN M++ Y++ G P +L LF +M G + + T+ S+L+AC
Sbjct: 346 FSEMPCRDVVSWNSMLACYAQCGKPNEALALFDQMRAVGVKPTEATVVSLLSACAHLGAL 405
Query: 236 NEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGH 295
++G +H Y ++ N I+ TAL+D+Y+KC K+ +A +VF++M ++++ WN +I G
Sbjct: 406 DKGLHLHTYINDNRIEVNSIVGTALVDMYAKCGKISLATQVFNAMESKDVLAWNTIIAGM 465
Query: 296 CIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFY 355
IHG +E +LF + V P++ITF+ ++ AC A ++ EG+K M Y
Sbjct: 466 AIHGNVKEAQQLFKEMKEAGV-----EPNDITFVAILSACSHAGMVDEGQKLLDCMSSSY 520
Query: 356 KIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVA 415
I+P HY C+ +L A A EEA E++ MP + + + +LL CR G
Sbjct: 521 GIEPKVEHYGCVIDLLARAGFLEEAMELIGTMPMEPNPSALG-----ALLGGCRIHGNFE 575
Query: 416 MVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLK 475
+ E + K +++ P RY L N+YA A +W+D +VR LMK + ++PG +++LK
Sbjct: 576 LGEMVGKRLINLQPCHSGRYILLSNIYAAAKKWDDARKVRNLMKVNGISKVPGVSVIELK 635
Query: 476 EVVEKLKVGHFWRGGMKEEVNKMME 500
+V + G + E NK+ E
Sbjct: 636 GMVHRFVAGDW----SHPESNKIYE 656
>gi|356514477|ref|XP_003525932.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Glycine max]
Length = 526
Score = 261 bits (667), Expect = 6e-67, Method: Compositional matrix adjust.
Identities = 157/495 (31%), Positives = 258/495 (52%), Gaps = 23/495 (4%)
Query: 1 MKQLLQIQAHLITSGLFFNNSFWTI----NLLKHSADFGSPDYTVLVFKCINNPGTFCVN 56
+ QL Q+ AH++ + N++ + + ++L S D Y +F+ + N TF N
Sbjct: 18 LTQLKQLHAHILRCRI--NDTPYALAPLLSVLATSNDASFFSYARSIFRHLTNRNTFMHN 75
Query: 57 AVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSC------AKTGCVERGGMCH 110
+I+ Y P V YL M++NG N+YTF L +C + + V G + H
Sbjct: 76 TMIRGYLQCRSPLHAVSCYLSMLQNGVAVNNYTFPPLIKACIALLPSSPSNIV--GRLVH 133
Query: 111 GLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMS 170
G +K G+ + V+++ I Y +D AR +F + S +D++ ++V G+ + G++
Sbjct: 134 GHVVKFGLRNDPYVVSAFIEFYSVSREVDTARVLFDETSYKDVVLGTAMVDGYGKMGNVK 193
Query: 171 AAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACG 230
+A E+FD MPERN VSW+ M++ YS+ + L LF EM G N+ + +VLTAC
Sbjct: 194 SAREVFDKMPERNAVSWSAMMAAYSRVSDFKEVLALFTEMQNEGTEPNESILVTVLTACA 253
Query: 231 RSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNA 290
+G VH Y R L+ N IL TAL+D+YSKC VE A VFD + D++ WNA
Sbjct: 254 HLGALTQGLWVHSYARRFHLESNPILATALVDMYSKCGCVESALSVFDCIVDKDAGAWNA 313
Query: 291 MILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQ 350
MI G ++G + ++LF + A P+E TF+ V+ AC A+++ +G F +
Sbjct: 314 MISGEALNGDAGKSLQLFRQM-----AASRTKPNETTFVAVLTACTHAKMVQQGLWLFEE 368
Query: 351 MIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSF-ESIMWVSLLSLCR 409
M Y + P HY C+ +L + A + EEAE+ M E ++ ++ +W +LL+ CR
Sbjct: 369 MSSVYGVVPRMEHYACVIDLLSRAGMVEEAEKF---MEEKMGGLTAGDANVWGALLNACR 425
Query: 410 FQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGC 469
+ + R+ K VDM D + N+Y AG + +VR +++ M + PGC
Sbjct: 426 IHKNIHVGNRVWKKLVDMGVTDCGTHVLTYNIYREAGWDVEANKVRSRIEEVGMKKKPGC 485
Query: 470 RLVDLKEVVEKLKVG 484
++++ VE+ G
Sbjct: 486 SIIEVDNEVEEFLAG 500
>gi|449434296|ref|XP_004134932.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Cucumis sativus]
gi|449479547|ref|XP_004155632.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Cucumis sativus]
Length = 638
Score = 261 bits (667), Expect = 7e-67, Method: Compositional matrix adjust.
Identities = 150/505 (29%), Positives = 257/505 (50%), Gaps = 17/505 (3%)
Query: 1 MKQLLQIQAHLITSGLFFNNSFWTINLLKHSADFGSP---DYTVLVFKCINNPGTFCVNA 57
+ Q+ Q A ++ GL N+ T +LL A S DY + ++ I++P F N
Sbjct: 44 ITQIKQAHARILVLGLA-NDGRITSHLLAFLAISSSSLPSDYALSIYNSISHPTVFATNN 102
Query: 58 VIKAYSNSCVPDQGVVFYLQMIKNGFM-PNSYTFVSLFGSCAKTGCVERGGMCHGLALKN 116
+I+ + +P + Y M ++ PN +T + +C+ + G +K
Sbjct: 103 MIRCFVKGDLPRHSISLYSHMCRSFVAAPNKHTLTFVLQACSNAFAIREGAQVQTHVIKL 162
Query: 117 GVDFELPVMNSLINMYGCFGAMDCARNMFVQM-SPRDLISWNSIVSGHVRSGDMSAAHEL 175
G ++ V N+LI++Y ++ A+ +F ++ S RD++SWNS++ G VR G +S A +L
Sbjct: 163 GFVKDVFVRNALIHLYCTCCRVESAKQVFDEVPSSRDVVSWNSMIVGFVRLGQISVAQKL 222
Query: 176 FDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARF 235
F MPE++V+SW +ISG ++G +L F+E+ + R N+ + S+L A +
Sbjct: 223 FVEMPEKDVISWGTIISGCVQNGELEKALDYFKELGEQKLRPNEAILVSLLAAAAQLGTL 282
Query: 236 NEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGH 295
G+ +H L TAL+D+Y+KC ++ ++ +FD M +++ WN MI G
Sbjct: 283 EYGKRIHSIANSLRFPMTASLGTALVDMYAKCGCIDESRFLFDRMPEKDKWSWNVMICGL 342
Query: 296 CIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFY 355
HG +E + LF + P +TFIGV+ AC RA L++EG+ +F+ M D Y
Sbjct: 343 ATHGLGQEALALFEKFLT-----QGFHPVNVTFIGVLTACSRAGLVSEGKHFFKLMTDTY 397
Query: 356 KIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVA 415
I+P HY CM +L + A +A E++ +MP D ++W S+L C+ G +
Sbjct: 398 GIEPEMEHYGCMVDLLSRAGFVYDAVEMINRMPAPPD-----PVLWASVLGSCQVHGFIE 452
Query: 416 MVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLK 475
+ E + + MDP Y L ++A +WEDV++VR LM +R ++ G L++ +
Sbjct: 453 LGEEIGNKLIQMDPTHNGHYVQLARIFARLRKWEDVSKVRRLMAERNSNKIAGWSLIEAE 512
Query: 476 EVVEKLKVGHFWRGGMKEEVNKMME 500
V + G E+ KM+E
Sbjct: 513 GRVHRFVAGD-KEHERTTEIYKMLE 536
>gi|449462338|ref|XP_004148898.1| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
mitochondrial-like [Cucumis sativus]
Length = 675
Score = 261 bits (667), Expect = 7e-67, Method: Compositional matrix adjust.
Identities = 135/421 (32%), Positives = 241/421 (57%), Gaps = 12/421 (2%)
Query: 57 AVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKN 116
+I Y+ + D+ + + M+ + PN T ++L +C++ G E G H +
Sbjct: 223 TMINGYARNNWLDEAIALFNSMLSSDVKPNEVTMIALLSACSQKGDSEMGKTLHEHIRRK 282
Query: 117 GVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELF 176
+ L ++N++++MY G + AR +F M RD+ SW S+++G+ ++GD+ +A +LF
Sbjct: 283 DITCSLNLLNAMLDMYVKCGCLTTAREIFNNMERRDVFSWTSLLNGYAKNGDLGSARKLF 342
Query: 177 DIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMK-SGFRGNDKTMASVLTACGRSARF 235
D MPERN+VSWN MI+GYS++ P +L+LF M+ G + T+ VL+A G+
Sbjct: 343 DEMPERNIVSWNAMIAGYSQNSQPMEALELFHNMVDVVGLVPTEDTLVCVLSASGQLGCL 402
Query: 236 NEGRSVH-GYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILG 294
G+ +H + + ++ ++IL A++D+Y+KC ++ A ++F SM ++NLV WN+MI
Sbjct: 403 EMGQEIHCNHVNKIGIQVSLILKNAVMDMYAKCGSIDAAAKLFHSMPEKNLVSWNSMISA 462
Query: 295 HCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDF 354
+ +G ++ + LF ++ G + PD ITFIGV+ AC ++EG+ +F M +
Sbjct: 463 YASYGHAKKALTLFDQMI-----GSGLKPDHITFIGVLSACSYGGFVSEGQAHFESMENC 517
Query: 355 YKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAV 414
+ ++P HY CM +L + L +EA E++ +MP M W +LL CR G V
Sbjct: 518 FGVEPKREHYACMVDLLSRVGLLKEAYELISRMP-----MEASEGGWGALLDACRKHGNV 572
Query: 415 AMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDL 474
M + + +++DP+D Y L N+ A +W+DV VR +M++R + ++PG L+++
Sbjct: 573 EMAKLAGEKLLELDPEDSGIYSLLANICADGKKWKDVRMVRRMMRERGVKKVPGHSLIEI 632
Query: 475 K 475
+
Sbjct: 633 E 633
Score = 145 bits (366), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 117/439 (26%), Positives = 195/439 (44%), Gaps = 75/439 (17%)
Query: 1 MKQLLQIQAHLITSGLFFNNSFWTINLLKHSA--DFGSPDYTVLVFKCINNPGTFCVNAV 58
M QL QIQAH+ +GL N F LL A D G Y L+F P F N +
Sbjct: 65 MFQLKQIQAHITCTGLM-NQIFPASRLLAFCALSDSGDIHYAHLIFDQTELPNCFFWNTM 123
Query: 59 IKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGV 118
IK Y + P G F+ QMI+N +S +FV +C + G H + K G
Sbjct: 124 IKGYCKANHPSMGFSFFRQMIRNRAEFDSGSFVFALKACGQFAEKIVGMAVHSVIWKRGF 183
Query: 119 DFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDI 178
D +L V N LI Y G + AR MF + S +D+++W ++++G+ R+ + A
Sbjct: 184 DSDLFVQNGLIQNYVETGCLGFARQMFDESSVKDVVTWTTMINGYARNNWLDEA------ 237
Query: 179 MPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEG 238
+ LF M+ S + N+ TM ++L+AC + G
Sbjct: 238 -------------------------IALFNSMLSSDVKPNEVTMIALLSACSQKGDSEMG 272
Query: 239 RSVHGYTVRTSLKPNIILDTALIDLYSKC-------------QKVEV------------- 272
+++H + R + ++ L A++D+Y KC ++ +V
Sbjct: 273 KTLHEHIRRKDITCSLNLLNAMLDMYVKCGCLTTAREIFNNMERRDVFSWTSLLNGYAKN 332
Query: 273 -----AQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEIT 327
A+++FD M +RN+V WNAMI G+ + +P E ++LF +V+ V G + P E T
Sbjct: 333 GDLGSARKLFDEMPERNIVSWNAMIAGYSQNSQPMEALELFHNMVD--VVG--LVPTEDT 388
Query: 328 FIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKM 387
+ V+ A + L G++ ++ I+ + + ++YA + A ++ M
Sbjct: 389 LVCVLSASGQLGCLEMGQEIHCNHVNKIGIQVSLILKNAVMDMYAKCGSIDAAAKLFHSM 448
Query: 388 PEDNDNMSFESIMWVSLLS 406
PE N + W S++S
Sbjct: 449 PEKN------LVSWNSMIS 461
Score = 92.0 bits (227), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 72/282 (25%), Positives = 125/282 (44%), Gaps = 15/282 (5%)
Query: 166 SGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASV 225
SGD+ AH +FD N WN MI GY K+ +P FR+M+++ + +
Sbjct: 99 SGDIHYAHLIFDQTELPNCFFWNTMIKGYCKANHPSMGFSFFRQMIRNRAEFDSGSFVFA 158
Query: 226 LTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNL 285
L ACG+ A G +VH + ++ + LI Y + + A+++FD + +++
Sbjct: 159 LKACGQFAEKIVGMAVHSVIWKRGFDSDLFVQNGLIQNYVETGCLGFARQMFDESSVKDV 218
Query: 286 VCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGR 345
V W MI G+ + +E I LF ++++ V P+E+T I ++ AC + + +E
Sbjct: 219 VTWTTMINGYARNNWLDEAIALFNSMLSSDV-----KPNEVTMIALLSACSQ-KGDSEMG 272
Query: 346 KYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLL 405
K + I I + M ++Y A EI M E D S W SLL
Sbjct: 273 KTLHEHIRRKDITCSLNLLNAMLDMYVKCGCLTTAREIFNNM-ERRDVFS-----WTSLL 326
Query: 406 SLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQ 447
+ G + +L F +M ++ + ++ Y+ Q
Sbjct: 327 NGYAKNGDLGSARKL---FDEMPERNIVSWNAMIAGYSQNSQ 365
Score = 43.5 bits (101), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 43/169 (25%), Positives = 68/169 (40%), Gaps = 31/169 (18%)
Query: 32 ADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFV 91
A GS D +F + N++I AY++ + + + QMI +G P+ TF+
Sbjct: 433 AKCGSIDAAAKLFHSMPEKNLVSWNSMISAYASYGHAKKALTLFDQMIGSGLKPDHITFI 492
Query: 92 SLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPR 151
+ +C+ G V G FE +M CFG ++ R + M
Sbjct: 493 GVLSACSYGGFVSEG----------QAHFE--------SMENCFG-VEPKREHYACMV-- 531
Query: 152 DLISWNSIVSGHVRSGDMSAAHELFDIMP-ERNVVSWNIMISGYSKSGN 199
DL+S R G + A+EL MP E + W ++ K GN
Sbjct: 532 DLLS---------RVGLLKEAYELISRMPMEASEGGWGALLDACRKHGN 571
>gi|449455158|ref|XP_004145320.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Cucumis sativus]
gi|449470513|ref|XP_004152961.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Cucumis sativus]
gi|449523079|ref|XP_004168552.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Cucumis sativus]
Length = 733
Score = 261 bits (667), Expect = 7e-67, Method: Compositional matrix adjust.
Identities = 137/443 (30%), Positives = 238/443 (53%), Gaps = 11/443 (2%)
Query: 43 VFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGC 102
+FK I+ N++I A++ P+ + +L+M + MPNS T V + +CAK
Sbjct: 183 LFKGISCKDVVSWNSMISAFAQGNCPEDALELFLKMERENVMPNSVTMVGVLSACAKKLD 242
Query: 103 VERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSG 162
+E G + G+ +L + N++++MY G++D A+ +F +M RD+ SW ++ G
Sbjct: 243 LEFGRWVCSYIERKGIKVDLTLCNAMLDMYTKCGSVDDAQKLFDEMPERDVFSWTIMLDG 302
Query: 163 HVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDK-T 221
+ + GD AA +F+ MP + + +WN++IS Y ++G P +L +F E+ S D+ T
Sbjct: 303 YAKMGDYDAARLVFNAMPVKEIAAWNVLISAYEQNGKPKEALAIFNELQLSKIAKPDEVT 362
Query: 222 MASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMA 281
+ S L+AC + + G +H Y R + N L ++L+D+Y+KC +E A VF S+
Sbjct: 363 LVSTLSACAQLGAIDLGGWIHVYIKREGIVLNCHLISSLVDMYAKCGSLEKALEVFYSVE 422
Query: 282 DRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELL 341
+R++ W+AMI G +HG+ + I LF + V P+ +TF V+CAC A L+
Sbjct: 423 ERDVYVWSAMIAGLGMHGRGKAAIDLFFEMQEAKV-----KPNSVTFTNVLCACSHAGLV 477
Query: 342 TEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMW 401
EGR +F +M Y + P HY CM ++ A EEA E++ +M + + + +W
Sbjct: 478 DEGRVFFHEMEPVYGVVPEMKHYACMVDILGRAGFLEEAMELINEM-----STTPSASVW 532
Query: 402 VSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKR 461
+LL C V + E + + ++P++ L N+YA G+WE V+ +R+LM+
Sbjct: 533 GALLGACSLHMNVELGELASDQLLKLEPRNHGAIVLLSNIYAKTGRWEKVSELRKLMRDT 592
Query: 462 RMGRMPGCRLVDLKEVVEKLKVG 484
+ + PGC ++ V + VG
Sbjct: 593 ELKKEPGCSSIEANGNVHEFLVG 615
Score = 155 bits (392), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 101/370 (27%), Positives = 169/370 (45%), Gaps = 70/370 (18%)
Query: 2 KQLLQIQAHLITSGLFFNNSFWTINLLKHSA--DFGSPDYTVLVFKCINNPGTFCVNAVI 59
KQL ++ A ++ +GLFF+ F L SA F + DY +F I P + N +I
Sbjct: 39 KQLKEVHARMLRTGLFFD-PFSASKLFTASALSSFSTLDYARNLFDQIPQPNLYTWNTLI 97
Query: 60 KAYSNSCVPDQGVVFYLQMI-KNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGV 118
+AY++S P Q V +L ++ K +PN +TF + + ++ G HG+A+K
Sbjct: 98 RAYASSSDPFQSFVIFLDLLDKCEDLPNKFTFPFVIKAASELKASRVGTAVHGMAIKLSF 157
Query: 119 DFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDI 178
+L ++NSL+ YG G + A +F +S +D++SWNS+
Sbjct: 158 GMDLYILNSLVRFYGACGDLSMAERLFKGISCKDVVSWNSM------------------- 198
Query: 179 MPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEG 238
IS +++ P +L+LF +M + N TM VL+AC + G
Sbjct: 199 ------------ISAFAQGNCPEDALELFLKMERENVMPNSVTMVGVLSACAKKLDLEFG 246
Query: 239 RSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRN-------------- 284
R V Y R +K ++ L A++D+Y+KC V+ AQ++FD M +R+
Sbjct: 247 RWVCSYIERKGIKVDLTLCNAMLDMYTKCGSVDDAQKLFDEMPERDVFSWTIMLDGYAKM 306
Query: 285 -----------------LVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEIT 327
+ WN +I + +GKP+E + +F L +A PDE+T
Sbjct: 307 GDYDAARLVFNAMPVKEIAAWNVLISAYEQNGKPKEALAIFNELQLSKIA----KPDEVT 362
Query: 328 FIGVICACVR 337
+ + AC +
Sbjct: 363 LVSTLSACAQ 372
>gi|226508188|ref|NP_001146230.1| uncharacterized protein LOC100279802 [Zea mays]
gi|219886289|gb|ACL53519.1| unknown [Zea mays]
Length = 537
Score = 261 bits (667), Expect = 7e-67, Method: Compositional matrix adjust.
Identities = 154/515 (29%), Positives = 249/515 (48%), Gaps = 53/515 (10%)
Query: 1 MKQLLQIQAHLITSGLFFNNSFWTINLLKHSAD--FGSPDYTVLVFKCINNPGTFCVNAV 58
++Q+ Q+ A ++ G F ++S L+ SA G + LVF I +P F N +
Sbjct: 21 LRQIKQVHALMVLQG-FLSDSSALRELIFASAVGVRGGTAHARLVFDRIPHPDRFMYNTL 79
Query: 59 IKAYSNSCVPDQGVVFYLQMIKNG-------FMPNSYTFVSLFGSCAKTGCVERGGMCHG 111
I+ ++S P V Y +M ++ P+ TF + +CA G E G H
Sbjct: 80 IRGAAHSDAPRDAVSIYARMARHSADCDLMTLRPDKRTFPFVLRACAAMGAGETGAQVHA 139
Query: 112 LALKNGVDFELPVMNSLINMYGCFGAMDCA------------------------------ 141
+K G + + V N+LI M+ G + A
Sbjct: 140 HVVKAGCESDAFVRNALIGMHATLGDLGAAAALFDGEAREDAVAWSAMISGFARRGDIGA 199
Query: 142 -RNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNP 200
R +F + +DL+SWN +++ + + GDM+ A ELFD P+R+VVSWN MISGY + G+
Sbjct: 200 ARELFDESPVKDLVSWNVMITAYAKLGDMAPARELFDGAPDRDVVSWNAMISGYVRCGSR 259
Query: 201 GCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVR--TSLKPNIILDT 258
+++LF +M G + + TM S+L+AC S + GR +HG+ + + P L
Sbjct: 260 KQAMELFEQMQAMGEKPDTVTMLSLLSACADSGDLDAGRRLHGFLSGRFSRIGPTTALGN 319
Query: 259 ALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAG 318
ALID+Y+KC + A VF M D+N+ WN++I G +HG E I +F ++ G V
Sbjct: 320 ALIDMYAKCGSMTSALEVFWLMQDKNVSTWNSIIGGLALHGHATESIAVFRKMLQGNV-- 377
Query: 319 GSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTE 378
PDEITF+ V+ AC ++ +G +YF M Y+I+PN HY CM ++ + L +
Sbjct: 378 ---KPDEITFVAVLAACSHGGMVDKGHEYFSLMQQRYRIEPNIKHYGCMVDMLSRGGLLK 434
Query: 379 EAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFL 438
EA E + M + ++W +LL CR G + + E + + + L
Sbjct: 435 EAFEFIGTM-----KIEPNPVIWRTLLGACRIHGEIELAEHANRELLKARSDASGDFVLL 489
Query: 439 LNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVD 473
N+YA G+W +R+LM + + G ++D
Sbjct: 490 SNIYASVGEWPGSENMRKLMDDSGVNKEAGRAVID 524
>gi|413956916|gb|AFW89565.1| hypothetical protein ZEAMMB73_426720 [Zea mays]
Length = 537
Score = 261 bits (667), Expect = 7e-67, Method: Compositional matrix adjust.
Identities = 154/515 (29%), Positives = 249/515 (48%), Gaps = 53/515 (10%)
Query: 1 MKQLLQIQAHLITSGLFFNNSFWTINLLKHSAD--FGSPDYTVLVFKCINNPGTFCVNAV 58
++Q+ Q+ A ++ G F ++S L+ SA G + LVF I +P F N +
Sbjct: 21 LRQIKQVHALMVLQG-FLSDSSALRELIFASAVGVRGGTAHARLVFDRIPHPDRFMYNTL 79
Query: 59 IKAYSNSCVPDQGVVFYLQMIKNG-------FMPNSYTFVSLFGSCAKTGCVERGGMCHG 111
I+ ++S P V Y +M ++ P+ TF + +CA G E G H
Sbjct: 80 IRGAAHSDAPRDAVSIYARMARHSADCDLMTLRPDKRTFPFVLRACAAMGAGETGAQVHA 139
Query: 112 LALKNGVDFELPVMNSLINMYGCFGAMDCA------------------------------ 141
+K G + + V N+LI M+ G + A
Sbjct: 140 HVVKAGCESDAFVRNALIGMHATLGDLGAAAALFDGEAREDAVAWSAMISGFARRGDIGA 199
Query: 142 -RNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNP 200
R +F + +DL+SWN +++ + + GDM+ A ELFD P+R+VVSWN MISGY + G+
Sbjct: 200 ARELFDESPVKDLVSWNVMITAYAKLGDMAPARELFDGAPDRDVVSWNAMISGYVRCGSR 259
Query: 201 GCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVR--TSLKPNIILDT 258
+++LF +M G + + TM S+L+AC S + GR +HG+ + + P L
Sbjct: 260 KQAMELFEQMQAMGEKPDTVTMLSLLSACADSGDLDAGRRLHGFLSGRFSRIGPTTALGN 319
Query: 259 ALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAG 318
ALID+Y+KC + A VF M D+N+ WN++I G +HG E I +F ++ G V
Sbjct: 320 ALIDMYAKCGSMTSALEVFWLMQDKNVSTWNSIIGGLALHGHATESIAVFRKMLQGNV-- 377
Query: 319 GSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTE 378
PDEITF+ V+ AC ++ +G +YF M Y+I+PN HY CM ++ + L +
Sbjct: 378 ---KPDEITFVAVLAACSHGGMVDKGHEYFSLMQQRYRIEPNIKHYGCMVDMLSRGGLLK 434
Query: 379 EAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFL 438
EA E + M + ++W +LL CR G + + E + + + L
Sbjct: 435 EAFEFIGTM-----KIEPNPVIWRTLLGACRIHGEIELAEHANRELLKARSDASGDFVLL 489
Query: 439 LNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVD 473
N+YA G+W +R+LM + + G ++D
Sbjct: 490 SNIYASVGEWPGSENMRKLMDDSGVNKEAGRAVID 524
>gi|296081956|emb|CBI20961.3| unnamed protein product [Vitis vinifera]
Length = 553
Score = 261 bits (666), Expect = 8e-67, Method: Compositional matrix adjust.
Identities = 149/489 (30%), Positives = 245/489 (50%), Gaps = 49/489 (10%)
Query: 3 QLLQIQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAY 62
+L +I AH++ L +SF ++ +G +Y L+FK + +P F NA+I+AY
Sbjct: 74 ELKKIHAHIVKFSLS-QSSFLVTKMVDVCNHYGETEYANLLFKGVADPNAFLYNAMIRAY 132
Query: 63 SNSCVPDQGVVFYLQMI-----KNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNG 117
++ V + Y QM+ +N P+ +TF + SCA C + G HG K G
Sbjct: 133 KHNKVYVLAITVYKQMLGNPHGENPIFPDKFTFPFVVKSCAGLMCYDLGKQVHGHVFKFG 192
Query: 118 VDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFD 177
V NSL+ MY V+ + AH +F+
Sbjct: 193 QKSNTVVENSLVEMY-------------------------------VKCDSLDDAHRVFE 221
Query: 178 IMPERN--VVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARF 235
M ER+ + SW ++SGY++ G +L+ FR M G ++ ++ SVL C +
Sbjct: 222 EMTERDATIFSWTAIVSGYARIGCYADALEFFRRMQMVGIEPDEISLVSVLPDCAQLGAL 281
Query: 236 NEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGH 295
G+ +H Y + NI + ALI++Y+KC ++ +R+FD M +R+++ W+ MI+G
Sbjct: 282 ELGKWIHIYADKAGFLRNICVCNALIEMYAKCGSIDQGRRLFDQMKERDVISWSTMIVGL 341
Query: 296 CIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFY 355
HG+ E I+LF + I P ITF+G++ AC A LL EG +YF M Y
Sbjct: 342 ANHGRAREAIELFQEM-----QKAKIEPSIITFVGLLTACAHAGLLNEGLRYFESMKRDY 396
Query: 356 KIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVA 415
I+P HY C+ NL + ++A E+++KMP D S +W SLLS CR G +
Sbjct: 397 NIEPGVEHYGCLVNLLGLSGRLDQALELVKKMPRKPD-----SPIWGSLLSSCRSHGNLK 451
Query: 416 MVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLK 475
+ + ++++P D Y L N+YA G+W+ V+R+R+LM+ + M + PGC +++
Sbjct: 452 IAVIAMEHLLELEPADTGNYVLLSNLYADLGKWDGVSRMRKLMRSKSMKKTPGCSSIEVD 511
Query: 476 EVVEKLKVG 484
+V++ G
Sbjct: 512 NMVQEFASG 520
>gi|449531466|ref|XP_004172707.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g29230-like, partial [Cucumis sativus]
Length = 610
Score = 261 bits (666), Expect = 8e-67, Method: Compositional matrix adjust.
Identities = 152/458 (33%), Positives = 240/458 (52%), Gaps = 40/458 (8%)
Query: 50 PGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLF---------GSCAK- 99
P F V+K+ + +G + ++IK G N + +L GS K
Sbjct: 121 PNCFTFPLVLKSCAKIGAFVEGEEIHCEVIKGGLEGNQFVATTLIDVYSGGRAIGSAYKL 180
Query: 100 -TGCVERG-----GMCHGLALKNGVDF-----------ELPVMNSLINMYGCFGAMDCAR 142
G +ER M G L N V ++ + N +++ Y G M AR
Sbjct: 181 FVGMLERNIVAWTSMISGYILCNRVALARRLFDLAPERDVVLWNIMVSGYIEIGDMKAAR 240
Query: 143 NMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGC 202
+F M RD +SWN++++G+ +GD+ A +LF+ MPERNV SWN +I GY+ +G
Sbjct: 241 KLFDTMPYRDTMSWNTMLNGYANNGDVEACEQLFEEMPERNVFSWNGLIGGYAHNGCFFE 300
Query: 203 SLKLFREMMKSGFR-GNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALI 261
L+ F+ M+ G ND T+ +VL+AC R + G+ VH Y K +I + ALI
Sbjct: 301 VLRCFKRMLIDGLVVPNDATLVTVLSACARLGALDLGKWVHVYAATIGFKGSIYVGNALI 360
Query: 262 DLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTAL-VNGTVAGGS 320
D+YSKC +E A VF+SM ++L+ WN+MI G HG + + LF + +NG
Sbjct: 361 DMYSKCGLIENAMEVFESMDLKDLITWNSMICGLATHGCGADALTLFHQMKINGE----- 415
Query: 321 ISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEA 380
PD ITFIGV+C+C L+ EG YF M++ Y I P HY CM +L+ A L + A
Sbjct: 416 -KPDGITFIGVLCSCTHLGLVEEGTSYFNSMVNEYSIAPQIEHYGCMVDLFGRAGLLDRA 474
Query: 381 EEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLN 440
E +++MP + D +++W +LL CR + + E + + ++P++ + Y L N
Sbjct: 475 IEFVKRMPMEAD-----AVIWAALLGACRIYKNIDLAELALQKLIVLEPKNPANYVLLSN 529
Query: 441 VYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLKEVV 478
+Y G+W+DVAR++ LM+ ++PGC L+++ + V
Sbjct: 530 IYGDLGRWKDVARLKILMRDTGSKKLPGCSLIEVNDSV 567
Score = 129 bits (324), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 99/386 (25%), Positives = 172/386 (44%), Gaps = 49/386 (12%)
Query: 4 LLQIQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAYS 63
L ++QA +IT G F N + N++ + +F +P NA+ + Y
Sbjct: 41 LQKVQAQIITHG-FQYNGYVAPNVVTSWVGLKQMAHARHLFDHFPDPKVELWNAISRGYF 99
Query: 64 NSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELP 123
++ + V + +M PN +TF + SCAK G G H +K G++
Sbjct: 100 HNAFYREVVFLFGKMKSMDVRPNCFTFPLVLKSCAKIGAFVEGEEIHCEVIKGGLEGNQF 159
Query: 124 VMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERN 183
V +LI++Y A+ A +FV M R++++W S++SG++ ++ A LFD+ PER+
Sbjct: 160 VATTLIDVYSGGRAIGSAYKLFVGMLERNIVAWTSMISGYILCNRVALARRLFDLAPERD 219
Query: 184 VVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHG 243
VV WNIM+SGY + G+ + KLF M
Sbjct: 220 VVLWNIMVSGYIEIGDMKAARKLFDTM--------------------------------- 246
Query: 244 YTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEE 303
R ++ N +L+ Y+ VE +++F+ M +RN+ WN +I G+ +G E
Sbjct: 247 -PYRDTMSWNTMLNG-----YANNGDVEACEQLFEEMPERNVFSWNGLIGGYAHNGCFFE 300
Query: 304 GIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGR--KYFRQMIDFYKIKPNF 361
++ F + + G + P++ T + V+ AC R L G+ + I F K +
Sbjct: 301 VLRCFKRM----LIDGLVVPNDATLVTVLSACARLGALDLGKWVHVYAATIGF---KGSI 353
Query: 362 AHYWCMANLYAGAELTEEAEEILRKM 387
+ ++Y+ L E A E+ M
Sbjct: 354 YVGNALIDMYSKCGLIENAMEVFESM 379
Score = 82.0 bits (201), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 64/246 (26%), Positives = 104/246 (42%), Gaps = 38/246 (15%)
Query: 158 SIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRG 217
++V+ V M+ A LFD P+ V WN + GY + + LF +M R
Sbjct: 62 NVVTSWVGLKQMAHARHLFDHFPDPKVELWNAISRGYFHNAFYREVVFLFGKMKSMDVRP 121
Query: 218 NDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVF 277
N T VL +C + F EG +H ++ L+ N + T LID+YS + + A ++F
Sbjct: 122 NCFTFPLVLKSCAKIGAFVEGEEIHCEVIKGGLEGNQFVATTLIDVYSGGRAIGSAYKLF 181
Query: 278 DSMADRNLVCWNAMILGHCIHGK-----------PEEGIKLFTALVNGTVAGGSISPDEI 326
M +RN+V W +MI G+ + + PE + L+ +V+G + G +
Sbjct: 182 VGMLERNIVAWTSMISGYILCNRVALARRLFDLAPERDVVLWNIMVSGYIEIGDM----- 236
Query: 327 TFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYW-CMANLYAGAELTEEAEEILR 385
K R++ D + + W M N YA E E++
Sbjct: 237 -------------------KAARKLFDTMPYRDTMS--WNTMLNGYANNGDVEACEQLFE 275
Query: 386 KMPEDN 391
+MPE N
Sbjct: 276 EMPERN 281
>gi|255551485|ref|XP_002516788.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223543876|gb|EEF45402.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 710
Score = 261 bits (666), Expect = 8e-67, Method: Compositional matrix adjust.
Identities = 151/448 (33%), Positives = 236/448 (52%), Gaps = 13/448 (2%)
Query: 23 WTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNG 82
W + +L + G D +VF+ I N +I Y ++ ++ Y MI G
Sbjct: 267 WNV-MLNGYSKAGFVDSARVVFERIPNKDLVTWGTIIDGYVRVERINEALMMYRSMISAG 325
Query: 83 FMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCAR 142
+ PN V L C +T + G +K G D + +++I++Y G ++ A
Sbjct: 326 WEPNDVMMVDLISGCGRTMAMTEGQQLLSAVVKMGFDCYDFIQSTIIHLYAACGRINEAC 385
Query: 143 NMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGC 202
F S ++ SWN++++G+VR+ + A ELF+ MPER+V SW+ MISGY+++ P
Sbjct: 386 LQFRIGSKENVASWNALIAGYVRNRMIDRAMELFNEMPERDVFSWSTMISGYTQNEQPNL 445
Query: 203 SLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALID 262
+L+LF +M+ SG + N+ TM SVL+A S EGR H Y S+ + L A+ID
Sbjct: 446 ALELFHKMVASGIKPNEVTMVSVLSAIATSGTLKEGRWAHEYVHNNSITVSDNLSAAIID 505
Query: 263 LYSKCQKVEVAQRVFDSMADR--NLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGS 320
+Y+KC + A VF + ++ + WNA+I G +HG +K+F+ L
Sbjct: 506 MYAKCGSINNALEVFYEIREKASTVSPWNAIICGLAVHGHANLSLKIFSDL-----ERRH 560
Query: 321 ISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEA 380
I + ITFIGV+ AC L+ G+++F M + I P+ HY CM +L A EEA
Sbjct: 561 IKLNAITFIGVLTACCHVGLVESGKRHFMSMKSEHSIDPDIKHYGCMVDLLGRAGRLEEA 620
Query: 381 EEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLN 440
EE++R MP M + ++W +LL+ CR G V + ER A++ ++P + L N
Sbjct: 621 EEMIRSMP-----MKADVVIWGTLLAACRTHGNVDVGERAAENLARLEPSHGASRVLLSN 675
Query: 441 VYAVAGQWEDVARVRELMKKRRMGRMPG 468
+YA AG+WED VR M+ RM R+PG
Sbjct: 676 MYADAGKWEDAFLVRRAMQSHRMQRLPG 703
Score = 134 bits (337), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 84/338 (24%), Positives = 161/338 (47%), Gaps = 28/338 (8%)
Query: 35 GSPDYTVLVFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLF 94
G DY +F + G +I +S + +Q V + QM G +PN T +L
Sbjct: 146 GQLDYACELFDEMPVKGCVSYTTMIMGFSQNECWNQAVELFKQMRNVGVVPNEVTIATLV 205
Query: 95 GSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLI 154
+ + G + M HGL +K + + V +L+ MY ++ AR +F +M ++++
Sbjct: 206 SAYSHFGGIWACRMLHGLVIKMLFEEFVLVSTNLLRMYCVCSSLVEARALFDEMPEKNIV 265
Query: 155 SWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSG 214
SWN +++G+ ++G + +A +F+ +P +++V+W +I GY + +L ++R M+ +G
Sbjct: 266 SWNVMLNGYSKAGFVDSARVVFERIPNKDLVTWGTIIDGYVRVERINEALMMYRSMISAG 325
Query: 215 FRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQ 274
+ ND M +++ CGR+ EG+ + V+ + + +I LY+ C ++ A
Sbjct: 326 WEPNDVMMVDLISGCGRTMAMTEGQQLLSAVVKMGFDCYDFIQSTIIHLYAACGRINEAC 385
Query: 275 RVFDSMADRNLVCWNAMILGHC-----------IHGKPEEGIKLFTALVNG--------- 314
F + N+ WNA+I G+ + PE + ++ +++G
Sbjct: 386 LQFRIGSKENVASWNALIAGYVRNRMIDRAMELFNEMPERDVFSWSTMISGYTQNEQPNL 445
Query: 315 -------TVAGGSISPDEITFIGVICACVRAELLTEGR 345
VA G I P+E+T + V+ A + L EGR
Sbjct: 446 ALELFHKMVASG-IKPNEVTMVSVLSAIATSGTLKEGR 482
Score = 125 bits (313), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 80/265 (30%), Positives = 139/265 (52%), Gaps = 11/265 (4%)
Query: 89 TFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQM 148
VS C+ + +G H L K+G+ + NSLINMYG G + A+++F +
Sbjct: 68 VLVSALKFCSDHLFLSQGKQIHCLVSKSGLGSNNFIQNSLINMYGKCGLLVDAKSIF-DV 126
Query: 149 SPR-DLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLF 207
PR D +S+N ++SG+V+SG + A ELFD MP + VS+ MI G+S++ +++LF
Sbjct: 127 CPRSDPVSYNVMISGYVKSGQLDYACELFDEMPVKGCVSYTTMIMGFSQNECWNQAVELF 186
Query: 208 REMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKC 267
++M G N+ T+A++++A R +HG ++ + +++ T L+ +Y C
Sbjct: 187 KQMRNVGVVPNEVTIATLVSAYSHFGGIWACRMLHGLVIKMLFEEFVLVSTNLLRMYCVC 246
Query: 268 QKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEIT 327
+ A+ +FD M ++N+V WN M+ G+ G + +F + N D +T
Sbjct: 247 SSLVEARALFDEMPEKNIVSWNVMLNGYSKAGFVDSARVVFERIPN---------KDLVT 297
Query: 328 FIGVICACVRAELLTEGRKYFRQMI 352
+ +I VR E + E +R MI
Sbjct: 298 WGTIIDGYVRVERINEALMMYRSMI 322
Score = 48.1 bits (113), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 56/238 (23%), Positives = 102/238 (42%), Gaps = 24/238 (10%)
Query: 221 TMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSM 280
+ S L C ++G+ +H ++ L N + +LI++Y KC + A+ +FD
Sbjct: 68 VLVSALKFCSDHLFLSQGKQIHCLVSKSGLGSNNFIQNSLINMYGKCGLLVDAKSIFDVC 127
Query: 281 ADRNLVCWNAMILGHCIHGKPEEGIKLFTAL-VNGTVAGGSISPDEITFIGVICACVRAE 339
+ V +N MI G+ G+ + +LF + V G V ++ +I + E
Sbjct: 128 PRSDPVSYNVMISGYVKSGQLDYACELFDEMPVKGCV----------SYTTMIMGFSQNE 177
Query: 340 LLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYA---GAELTEEAEEILRKMPEDNDNMSF 396
+ + F+QM + + PN + + Y+ G ++ K M F
Sbjct: 178 CWNQAVELFKQMRNV-GVVPNEVTIATLVSAYSHFGGIWACRMLHGLVIK-------MLF 229
Query: 397 ESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARV 454
E + VS L + ++VE A F +M ++ + +LN Y+ AG + D ARV
Sbjct: 230 EEFVLVSTNLLRMYCVCSSLVEARAL-FDEMPEKNIVSWNVMLNGYSKAG-FVDSARV 285
>gi|359483655|ref|XP_003632994.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g21065-like [Vitis vinifera]
Length = 613
Score = 260 bits (665), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 154/480 (32%), Positives = 240/480 (50%), Gaps = 42/480 (8%)
Query: 6 QIQAHLITSGLFFNNSFWTINLLKHSADFGSP-DYTVLVFKCINNPGTFCVNAVIKAYSN 64
QI A I G+ N L+ F SP Y +F I NP F N +I+ Y+
Sbjct: 58 QIHAFSIRHGVPLTNPDMGKYLIFTLLSFCSPMSYAHQIFSQIQNPNIFTWNTMIRGYAE 117
Query: 65 SCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPV 124
S P + Y QM + P+++T+ L + AK V G H +A++NG + + V
Sbjct: 118 SENPMPALELYRQMHVSCIEPDTHTYPFLLKAIAKLMDVREGEKVHSIAIRNGFESLVFV 177
Query: 125 MNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNV 184
N+L++MY GH S AH+LF++M ERN+
Sbjct: 178 QNTLVHMYAA--------------------------CGHAES-----AHKLFELMAERNL 206
Query: 185 VSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGY 244
V+WN +I+GY+ +G P +L LFREM G + TM S+L+AC GR H Y
Sbjct: 207 VTWNSVINGYALNGRPNEALTLFREMGLRGVEPDGFTMVSLLSACAELGALALGRRAHVY 266
Query: 245 TVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEG 304
V+ L N+ AL+DLY+KC + A +VFD M ++++V W ++I+G ++G +E
Sbjct: 267 MVKVGLDGNLHAGNALLDLYAKCGSIRQAHKVFDEMEEKSVVSWTSLIVGLAVNGFGKEA 326
Query: 305 IKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHY 364
++LF L + P EITF+GV+ AC ++ EG YF++M + Y I P HY
Sbjct: 327 LELFKELER-----KGLMPSEITFVGVLYACSHCGMVDEGFDYFKRMKEEYGIVPKIEHY 381
Query: 365 WCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSF 424
CM +L A L ++A E ++ MP M +++W +LL C G +A+ E
Sbjct: 382 GCMVDLLGRAGLVKQAHEFIQNMP-----MQPNAVVWRTLLGACTIHGHLALGEVARAQL 436
Query: 425 VDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLKEVVEKLKVG 484
+ ++P+ Y L N+YA +W DV +VR M + + + PG LV+L+ + + +G
Sbjct: 437 LQLEPKHSGDYVLLSNLYASEQRWSDVHKVRRTMLREGVKKTPGHSLVELRNRLHEFVMG 496
>gi|224129498|ref|XP_002320601.1| predicted protein [Populus trichocarpa]
gi|222861374|gb|EEE98916.1| predicted protein [Populus trichocarpa]
Length = 629
Score = 260 bits (665), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 156/494 (31%), Positives = 264/494 (53%), Gaps = 23/494 (4%)
Query: 2 KQLLQIQAHLITSGLFFNNSFWTINLLKHSADFGSPD--YTVLVFKCINNPGTFCVNAVI 59
+ L QI AH I +G ++ LLK + Y F I++P F N +I
Sbjct: 29 RHLKQIHAHFIKTGQI-HHPLAAAELLKFLTLSTQREIKYARKFFSQIHHPNCFSWNTII 87
Query: 60 KAYSNSCVPD-------QGVVFYLQMIKNGFM-PNSYTFVSLFGSCAKTGCVERGGMCHG 111
+A ++S D + ++++ M+ +G + PN +TF + +CAK +E G HG
Sbjct: 88 RALADSDDDDLFHVNSLEALLYFSHMLTDGLVEPNKFTFPCVLKACAKLARIEEGKQLHG 147
Query: 112 LALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPR-DLISWNSIVSGHVRSGDMS 170
+K G+ + V ++L+ +Y GAM A +F Q +++ WN ++ G+VR GD+
Sbjct: 148 FVVKLGLVSDEFVRSNLVRVYVMCGAMKDAHVLFYQTRLEGNVVLWNVMIDGYVRMGDLR 207
Query: 171 AAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACG 230
A+ ELFD MP ++VVSWN+MISG +++G+ ++++F +M N T+ SVL A
Sbjct: 208 ASRELFDSMPNKSVVSWNVMISGCAQNGHFKEAIEMFHDMQLGDVPPNYVTLVSVLPAVS 267
Query: 231 RSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMAD-RNLVCWN 289
R G+ VH + + ++ + +L +ALID+YSKC ++ A +VF+ + + +N + W+
Sbjct: 268 RLGAIELGKWVHLFAEKNEIEIDDVLGSALIDMYSKCGSIDKAVQVFEGIRNKKNPITWS 327
Query: 290 AMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFR 349
A+I G +HG+ + + F + V +P ++ +IGV+ AC A L+ EGR +
Sbjct: 328 AIIGGLAMHGRARDALDHFWRMQQAGV-----TPSDVVYIGVLSACSHAGLVEEGRSIYY 382
Query: 350 QMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCR 409
M++ + P HY CM +L A EEAE+++ MP D++ + +LL C+
Sbjct: 383 HMVNIVGLLPRIEHYGCMVDLLGRAGCLEEAEQLILNMPVKPDDVILK-----ALLGACK 437
Query: 410 FQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGC 469
G + M ER+AK + P D Y L N++A G WE V +VR MK+ + + PGC
Sbjct: 438 MHGNIEMGERIAKILMGWYPHDSGSYVALSNMFASEGNWEGVVKVRLKMKELDIRKDPGC 497
Query: 470 RLVDLKEVVEKLKV 483
++L V+ + V
Sbjct: 498 SWIELDGVIHEFLV 511
>gi|449441542|ref|XP_004138541.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g29230-like [Cucumis sativus]
Length = 652
Score = 260 bits (665), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 152/458 (33%), Positives = 240/458 (52%), Gaps = 40/458 (8%)
Query: 50 PGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLF---------GSCAK- 99
P F V+K+ + +G + ++IK G N + +L GS K
Sbjct: 163 PNCFTFPLVLKSCAKIGAFVEGEEIHCEVIKGGLEGNQFVATTLIDVYSGGRAIGSAYKL 222
Query: 100 -TGCVERG-----GMCHGLALKNGVDF-----------ELPVMNSLINMYGCFGAMDCAR 142
G +ER M G L N V ++ + N +++ Y G M AR
Sbjct: 223 FVGMLERNIVAWTSMISGYILCNRVALARRLFDLAPERDVVLWNIMVSGYIEIGDMKAAR 282
Query: 143 NMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGC 202
+F M RD +SWN++++G+ +GD+ A +LF+ MPERNV SWN +I GY+ +G
Sbjct: 283 KLFDTMPYRDTMSWNTMLNGYANNGDVEACEQLFEEMPERNVFSWNGLIGGYAHNGCFFE 342
Query: 203 SLKLFREMMKSGFR-GNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALI 261
L+ F+ M+ G ND T+ +VL+AC R + G+ VH Y K +I + ALI
Sbjct: 343 VLRCFKRMLIDGLVVPNDATLVTVLSACARLGALDLGKWVHVYAATIGFKGSIYVGNALI 402
Query: 262 DLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTAL-VNGTVAGGS 320
D+YSKC +E A VF+SM ++L+ WN+MI G HG + + LF + +NG
Sbjct: 403 DMYSKCGLIENAMEVFESMDLKDLITWNSMICGLATHGCGADALTLFHQMKINGE----- 457
Query: 321 ISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEA 380
PD ITFIGV+C+C L+ EG YF M++ Y I P HY CM +L+ A L + A
Sbjct: 458 -KPDGITFIGVLCSCTHLGLVEEGTSYFNSMVNEYSIAPQIEHYGCMVDLFGRAGLLDRA 516
Query: 381 EEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLN 440
E +++MP + D +++W +LL CR + + E + + ++P++ + Y L N
Sbjct: 517 IEFVKRMPMEAD-----AVIWAALLGACRIYKNIDLAELALQKLIVLEPKNPANYVLLSN 571
Query: 441 VYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLKEVV 478
+Y G+W+DVAR++ LM+ ++PGC L+++ + V
Sbjct: 572 IYGDLGRWKDVARLKILMRDTGSKKLPGCSLIEVNDSV 609
Score = 129 bits (323), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 99/386 (25%), Positives = 172/386 (44%), Gaps = 49/386 (12%)
Query: 4 LLQIQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAYS 63
L ++QA +IT G F N + N++ + +F +P NA+ + Y
Sbjct: 83 LQKVQAQIITHG-FQYNGYVAPNVVTSWVGLKQMAHARHLFDHFPDPKVELWNAISRGYF 141
Query: 64 NSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELP 123
++ + V + +M PN +TF + SCAK G G H +K G++
Sbjct: 142 HNAFYREVVFLFGKMKSMDVRPNCFTFPLVLKSCAKIGAFVEGEEIHCEVIKGGLEGNQF 201
Query: 124 VMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERN 183
V +LI++Y A+ A +FV M R++++W S++SG++ ++ A LFD+ PER+
Sbjct: 202 VATTLIDVYSGGRAIGSAYKLFVGMLERNIVAWTSMISGYILCNRVALARRLFDLAPERD 261
Query: 184 VVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHG 243
VV WNIM+SGY + G+ + KLF M
Sbjct: 262 VVLWNIMVSGYIEIGDMKAARKLFDTM--------------------------------- 288
Query: 244 YTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEE 303
R ++ N +L+ Y+ VE +++F+ M +RN+ WN +I G+ +G E
Sbjct: 289 -PYRDTMSWNTMLNG-----YANNGDVEACEQLFEEMPERNVFSWNGLIGGYAHNGCFFE 342
Query: 304 GIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGR--KYFRQMIDFYKIKPNF 361
++ F + + G + P++ T + V+ AC R L G+ + I F K +
Sbjct: 343 VLRCFKRM----LIDGLVVPNDATLVTVLSACARLGALDLGKWVHVYAATIGF---KGSI 395
Query: 362 AHYWCMANLYAGAELTEEAEEILRKM 387
+ ++Y+ L E A E+ M
Sbjct: 396 YVGNALIDMYSKCGLIENAMEVFESM 421
Score = 82.4 bits (202), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 63/245 (25%), Positives = 104/245 (42%), Gaps = 36/245 (14%)
Query: 158 SIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRG 217
++V+ V M+ A LFD P+ V WN + GY + + LF +M R
Sbjct: 104 NVVTSWVGLKQMAHARHLFDHFPDPKVELWNAISRGYFHNAFYREVVFLFGKMKSMDVRP 163
Query: 218 NDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVF 277
N T VL +C + F EG +H ++ L+ N + T LID+YS + + A ++F
Sbjct: 164 NCFTFPLVLKSCAKIGAFVEGEEIHCEVIKGGLEGNQFVATTLIDVYSGGRAIGSAYKLF 223
Query: 278 DSMADRNLVCWNAMILGHCIHGK-----------PEEGIKLFTALVNGTVAGGSISPDEI 326
M +RN+V W +MI G+ + + PE + L+ +V+G + G +
Sbjct: 224 VGMLERNIVAWTSMISGYILCNRVALARRLFDLAPERDVVLWNIMVSGYIEIGDM----- 278
Query: 327 TFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRK 386
K R++ D + + + M N YA E E++ +
Sbjct: 279 -------------------KAARKLFDTMPYRDTMS-WNTMLNGYANNGDVEACEQLFEE 318
Query: 387 MPEDN 391
MPE N
Sbjct: 319 MPERN 323
>gi|147864534|emb|CAN78385.1| hypothetical protein VITISV_017238 [Vitis vinifera]
Length = 643
Score = 260 bits (665), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 150/454 (33%), Positives = 245/454 (53%), Gaps = 37/454 (8%)
Query: 58 VIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSL----------------FGSCAK-- 99
VIKA + S V G++ + ++K+GF +SY SL F C+
Sbjct: 6 VIKACNESSVTWFGLLVHTHVVKSGFECDSYIVNSLIHLYANGKDLGAAKQLFSLCSDRD 65
Query: 100 --------TGCVERGGMCHG-LALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSP 150
G V+RG M H + V ++ N++IN Y G +D A+ +F +M
Sbjct: 66 VVSWNAMIDGYVKRGEMGHTRMVFDRMVCRDVISWNTIINGYAIVGKIDEAKRLFDEMPE 125
Query: 151 RDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREM 210
R+L+SWNS++SG V+ G++ A LF MP R+VVSWN M++ Y++ G P +L LF +M
Sbjct: 126 RNLVSWNSMLSGFVKCGNVEEAFGLFSEMPCRDVVSWNSMLACYAQCGKPNEALALFDQM 185
Query: 211 MKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKV 270
G + + T+ S+L+AC ++G +H Y ++ N I+ TAL+D+Y+KC K+
Sbjct: 186 RAVGVKPTEATVVSLLSACAHLGALDKGLHLHTYINDNRIEVNSIVGTALVDMYAKCGKI 245
Query: 271 EVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIG 330
+A +VF++M ++++ WN +I G IHG +E +LF + S+ P++ITF+
Sbjct: 246 SLATQVFNAMESKDVLAWNTIIAGMAIHGHVKEAQQLFKEMKE-----ASVEPNDITFVA 300
Query: 331 VICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPED 390
++ AC A ++ EG+K M Y I+P HY C+ +L A A L EEA E++ MP +
Sbjct: 301 MLSACSHAGMVDEGQKLLDCMSSSYGIEPKVEHYDCVIDLLARAGLLEEAMELIGTMPME 360
Query: 391 NDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWED 450
+ + +LL CR G + E + K +++ P RY L N+YA A +W+D
Sbjct: 361 PNPSALG-----ALLGGCRIHGNFELGEMVGKRLINLQPCHSGRYILLSNIYAAAKKWDD 415
Query: 451 VARVRELMKKRRMGRMPGCRLVDLKEVVEKLKVG 484
+VR LMK + ++PG +++LK +V + G
Sbjct: 416 ARKVRNLMKVNGISKVPGVSVIELKGMVHRFVAG 449
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 61/260 (23%), Positives = 114/260 (43%), Gaps = 33/260 (12%)
Query: 56 NAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALK 115
N+++ Y+ P++ + + QM G P T VSL +CA G +++G H
Sbjct: 163 NSMLACYAQCGKPNEALALFDQMRAVGVKPTEATVVSLLSACAHLGALDKGLHLHTYIND 222
Query: 116 NGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHEL 175
N ++ V +L++MY G + A +F M +D+++WN+I++G G + A +L
Sbjct: 223 NRIEVNSIVGTALVDMYAKCGKISLATQVFNAMESKDVLAWNTIIAGMAIHGHVKEAQQL 282
Query: 176 FDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARF 235
F+EM ++ ND T ++L+AC +
Sbjct: 283 -------------------------------FKEMKEASVEPNDITFVAMLSACSHAGMV 311
Query: 236 NEGRSVHG-YTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMA-DRNLVCWNAMIL 293
+EG+ + + ++P + +IDL ++ +E A + +M + N A++
Sbjct: 312 DEGQKLLDCMSSSYGIEPKVEHYDCVIDLLARAGLLEEAMELIGTMPMEPNPSALGALLG 371
Query: 294 GHCIHGKPEEGIKLFTALVN 313
G IHG E G + L+N
Sbjct: 372 GCRIHGNFELGEMVGKRLIN 391
>gi|356502930|ref|XP_003520267.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Glycine max]
Length = 780
Score = 260 bits (665), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 146/476 (30%), Positives = 253/476 (53%), Gaps = 20/476 (4%)
Query: 12 ITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCV--NAVIKAYSNSCVPD 69
++S LF NS IN S G+PD VF N PG V NA+I A++ +PD
Sbjct: 204 LSSDLFILNSL--INFYGSS---GAPDLAHRVFT--NMPGKDVVSWNAMINAFALGGLPD 256
Query: 70 QGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLI 129
+ ++ + +M PN T VS+ +CAK +E G NG L + N+++
Sbjct: 257 KALLLFQEMEMKDVKPNVITMVSVLSACAKKIDLEFGRWICSYIENNGFTEHLILNNAML 316
Query: 130 NMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNI 189
+MY G ++ A+++F +MS +D++SW +++ GH + G+ AH +FD MP + +WN
Sbjct: 317 DMYVKCGCINDAKDLFNKMSEKDIVSWTTMLDGHAKLGNYDEAHCIFDAMPHKWTAAWNA 376
Query: 190 MISGYSKSGNPGCSLKLFREM-MKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRT 248
+IS Y ++G P +L LF EM + + ++ T+ L A + + G +H Y +
Sbjct: 377 LISAYEQNGKPRVALSLFHEMQLSKDAKPDEVTLICALCASAQLGAIDFGHWIHVYIKKH 436
Query: 249 SLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLF 308
+ N L T+L+D+Y+KC + A VF ++ +++ W+AMI ++G+ + + LF
Sbjct: 437 DINLNCHLATSLLDMYAKCGNLNKAMEVFHAVERKDVYVWSAMIGALAMYGQGKAALDLF 496
Query: 309 TALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMA 368
++++ I P+ +TF ++CAC A L+ EG + F QM Y I P HY C+
Sbjct: 497 SSMLEAY-----IKPNAVTFTNILCACNHAGLVNEGEQLFEQMEPLYGIVPQIQHYVCVV 551
Query: 369 NLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMD 428
+++ A L E+A + KMP + + +W +LL C G V + E ++ ++++
Sbjct: 552 DIFGRAGLLEKAASFIEKMP-----IPPTAAVWGALLGACSRHGNVELAELAYQNLLELE 606
Query: 429 PQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLKEVVEKLKVG 484
P + + L N+YA AG WE V+ +R+LM+ + + P C +D+ +V + VG
Sbjct: 607 PCNHGAFVLLSNIYAKAGDWEKVSNLRKLMRDSDVKKEPWCSSIDVNGIVHEFLVG 662
Score = 149 bits (375), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 99/366 (27%), Positives = 164/366 (44%), Gaps = 64/366 (17%)
Query: 3 QLLQIQAHLITSGLFFNNSFWTINLLKHSADFGSPD---YTVLVFKCINNPGTFCVNAVI 59
QL QI AH++ + F + +T + L + S Y VF I P +C N +I
Sbjct: 87 QLKQIHAHMLRTSRFCDP--YTASKLLTAYAISSCSCLIYAKNVFNQIPQPNLYCWNTLI 144
Query: 60 KAYSNSCVPDQGVVFYLQMIKN-GFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGV 118
+ Y++S P Q + +L M+ + PN +TF LF + ++ + G + HG+ +K +
Sbjct: 145 RGYASSSDPTQSFLIFLHMLHSCSEFPNKFTFPFLFKAASRLKVLHLGSVLHGMVIKASL 204
Query: 119 DFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDI 178
+L ++NSLIN YG GA D A +F M +D++SWN+
Sbjct: 205 SSDLFILNSLINFYGSSGAPDLAHRVFTNMPGKDVVSWNA-------------------- 244
Query: 179 MPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEG 238
MI+ ++ G P +L LF+EM + N TM SVL+AC + G
Sbjct: 245 -----------MINAFALGGLPDKALLLFQEMEMKDVKPNVITMVSVLSACAKKIDLEFG 293
Query: 239 RSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIH 298
R + Y ++IL+ A++D+Y KC + A+ +F+ M+++++V W M+ GH
Sbjct: 294 RWICSYIENNGFTEHLILNNAMLDMYVKCGCINDAKDLFNKMSEKDIVSWTTMLDGHAKL 353
Query: 299 GKPEEGIKLFTALVNGTVAG---------------------------GSISPDEITFIGV 331
G +E +F A+ + A PDE+T I
Sbjct: 354 GNYDEAHCIFDAMPHKWTAAWNALISAYEQNGKPRVALSLFHEMQLSKDAKPDEVTLICA 413
Query: 332 ICACVR 337
+CA +
Sbjct: 414 LCASAQ 419
Score = 49.3 bits (116), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 38/177 (21%), Positives = 74/177 (41%), Gaps = 7/177 (3%)
Query: 214 GFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLY--SKCQKVE 271
G +GN+ ++L + + + +H + +RTS + + L+ Y S C +
Sbjct: 64 GEKGNEVESTNILEFIDQCTNTMQLKQIHAHMLRTSRFCDPYTASKLLTAYAISSCSCLI 123
Query: 272 VAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGV 331
A+ VF+ + NL CWN +I G+ P + +F +++ S P++ TF +
Sbjct: 124 YAKNVFNQIPQPNLYCWNTLIRGYASSSDPTQSFLIFLHMLHSC----SEFPNKFTFPFL 179
Query: 332 ICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMP 388
A R ++L G M+ + + + N Y + + A + MP
Sbjct: 180 FKAASRLKVLHLG-SVLHGMVIKASLSSDLFILNSLINFYGSSGAPDLAHRVFTNMP 235
>gi|224097410|ref|XP_002310922.1| predicted protein [Populus trichocarpa]
gi|222850742|gb|EEE88289.1| predicted protein [Populus trichocarpa]
Length = 554
Score = 260 bits (665), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 150/447 (33%), Positives = 236/447 (52%), Gaps = 19/447 (4%)
Query: 43 VFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGC 102
VFK I +P T N +I+A++ S P + + F+ QM+ P+++T+ L +C +
Sbjct: 82 VFKDIQSPSTILWNQMIRAHARSQTPAKSIQFFNQMLLTDSRPDAHTYSFLLAACTSSLS 141
Query: 103 VERGGMCHGLALKNGV-DFELPVMNSLINMYGCF-----GAMDCARNMFVQMSPRDLISW 156
+ G H L NG + +M+ L+N Y A+ AR +F MS R+++ W
Sbjct: 142 LREGQQVHSKVLTNGYYSSNVFLMSKLVNFYAAVVGGEGAALASARKVFDDMSERNVVCW 201
Query: 157 NSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFR 216
NS+++G++R G++ A +F MPERNVVSW MISGY+K+G +L LF +M K+G
Sbjct: 202 NSMLAGYMRRGNLDGARRIFYEMPERNVVSWTTMISGYAKNGKCKQALNLFDQMRKAGVE 261
Query: 217 GNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPN----IILDTALIDLYSKCQKVEV 272
+ + + LTAC G +H Y T + N + L+ ALI +Y+ C ++
Sbjct: 262 LDQVVLLAALTACAELGDLKMGMWIHSYIQDTFVGSNQRVLVSLNNALIHMYASCGMIDE 321
Query: 273 AQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVI 332
A VF M +R+ V W ++I G + +++F ++ + PD ITFIGV+
Sbjct: 322 AYEVFRWMPERSAVSWTSLITAFAKQGYAQAVLEIFRSMQR--LGTSEARPDGITFIGVL 379
Query: 333 CACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDND 392
CAC A L+ EGR+ F+ MI + IKP HY CM +L + A +EA+E++ MP +
Sbjct: 380 CACSHAGLVDEGRQLFKDMIQRWGIKPRIEHYGCMVDLLSRAGFLDEAQELIATMPVKPN 439
Query: 393 NMSFESIMWVSLLSLCRFQGAVAMVERLAKSFV-DMDPQDFSRYQFLL-NVYAVAGQWED 450
N +W +LL CRF + +++ V + DP + Y LL VYA A +W+D
Sbjct: 440 NA-----VWGALLGGCRFYRNAELASLVSQKLVAEPDPDKAAGYLSLLAQVYASAEKWQD 494
Query: 451 VARVRELMKKRRMGRMPGCRLVDLKEV 477
VA VR+ M + + G V + EV
Sbjct: 495 VATVRQKMVAMGVKKPAGQSWVQINEV 521
Score = 95.9 bits (237), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 67/288 (23%), Positives = 125/288 (43%), Gaps = 41/288 (14%)
Query: 171 AAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACG 230
+AH +F + + + WN MI +++S P S++ F +M+ + R + T + +L AC
Sbjct: 78 SAHYVFKDIQSPSTILWNQMIRAHARSQTPAKSIQFFNQMLLTDSRPDAHTYSFLLAACT 137
Query: 231 RSARFNEGRSVHGYTVRTS-LKPNIILDTALIDLYSKC-----QKVEVAQRVFDSMADRN 284
S EG+ VH + N+ L + L++ Y+ + A++VFD M++RN
Sbjct: 138 SSLSLREGQQVHSKVLTNGYYSSNVFLMSKLVNFYAAVVGGEGAALASARKVFDDMSERN 197
Query: 285 LVCWNAMILGHCIHGK-----------PEEGIKLFTALVNGTVAGGS------------- 320
+VCWN+M+ G+ G PE + +T +++G G
Sbjct: 198 VVCWNSMLAGYMRRGNLDGARRIFYEMPERNVVSWTTMISGYAKNGKCKQALNLFDQMRK 257
Query: 321 --ISPDEITFIGVICACVRAELLTEG---RKYFRQMIDFYKIKPNFAHYWCMANLYAGAE 375
+ D++ + + AC L G Y + + + + ++YA
Sbjct: 258 AGVELDQVVLLAALTACAELGDLKMGMWIHSYIQDTFVGSNQRVLVSLNNALIHMYASCG 317
Query: 376 LTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKS 423
+ +EA E+ R MPE + ++ W SL++ QG V + +S
Sbjct: 318 MIDEAYEVFRWMPERS------AVSWTSLITAFAKQGYAQAVLEIFRS 359
>gi|357477961|ref|XP_003609266.1| Pentatricopeptide repeat protein [Medicago truncatula]
gi|355510321|gb|AES91463.1| Pentatricopeptide repeat protein [Medicago truncatula]
Length = 738
Score = 260 bits (664), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 159/454 (35%), Positives = 230/454 (50%), Gaps = 51/454 (11%)
Query: 56 NAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALK 115
NA+I Y S ++ +V + +M + +PN T V + +C T E G
Sbjct: 232 NAMISGYVQSGRFEEAIVCFYEMQEANVLPNKSTMVVVLSACGHTRSGELGKWIGSWVRD 291
Query: 116 NGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHEL 175
NG L + N+LI+MY G D AR EL
Sbjct: 292 NGFGSNLQLTNALIDMYCKCGETDIAR-------------------------------EL 320
Query: 176 FDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARF 235
FD + E++V+SWN MI GYS +L LF M++S + ND T +L AC
Sbjct: 321 FDGIEEKDVISWNTMIGGYSYLSLYEEALALFEVMLRSNVKPNDVTFLGILHACACLGAL 380
Query: 236 NEGRSVHGY---TVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMI 292
+ G+ VH Y +R S N L T+LID+Y+KC +E A+RVF SM RNL WNAM+
Sbjct: 381 DLGKWVHAYIDKNLRNS--SNASLWTSLIDMYAKCGCIEAAERVFRSMHSRNLASWNAML 438
Query: 293 LGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMI 352
G +HG E + LF+ +VN G PD+ITF+GV+ AC +A L+ G +YFR MI
Sbjct: 439 SGFAMHGHAERALALFSEMVNK----GLFRPDDITFVGVLSACTQAGLVDLGHQYFRSMI 494
Query: 353 DFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQG 412
Y I P HY CM +L A AE EEAE +++ M M + +W SLLS C+ G
Sbjct: 495 QDYGISPKLQHYGCMIDLLARAEKFEEAEILMKNM-----EMEPDGAIWGSLLSACKAHG 549
Query: 413 AVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLV 472
V E +A+ ++P++ + L N+YA AG+W+DVAR+R + + M ++PGC +
Sbjct: 550 RVEFGEYVAERLFQLEPENAGAFVLLSNIYAGAGRWDDVARIRTRLNDKGMKKVPGCTSI 609
Query: 473 DLKEVVEKLKVGHFWRG------GMKEEVNKMME 500
++ V + VG + M EV+K++E
Sbjct: 610 EIDGDVHEFLVGDKFHPECNNIYKMLNEVDKLLE 643
Score = 194 bits (492), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 127/393 (32%), Positives = 201/393 (51%), Gaps = 15/393 (3%)
Query: 6 QIQAHLITSGLFFNNSFWTINLLKH---SADFGSPDYTVLVF---KCINNPGTFCVNAVI 59
QI + +I +GL NN+ + + L H + G Y + +F + + F N++I
Sbjct: 46 QIHSLIIKTGL--NNTVFVQSKLIHFCAVSPSGDLSYALSLFEENQQHHKHNVFIWNSLI 103
Query: 60 KAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVD 119
+ YS S P + + +M+ G PNS+TF LF SC K G H ALK +
Sbjct: 104 RGYSLSSSPLSSLHLFSRMLYYGVQPNSHTFPFLFKSCTKAKATHEGKQLHAHALKLALH 163
Query: 120 FELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIM 179
F V S+I+MY G MD AR +F + S RD +S+ ++++G+V G + A LFD +
Sbjct: 164 FNPHVHTSVIHMYASVGEMDFARLVFDKSSLRDAVSFTALITGYVSQGCLDDARRLFDEI 223
Query: 180 PERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGR 239
P ++VVSWN MISGY +SG ++ F EM ++ N TM VL+ACG + G+
Sbjct: 224 PVKDVVSWNAMISGYVQSGRFEEAIVCFYEMQEANVLPNKSTMVVVLSACGHTRSGELGK 283
Query: 240 SVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHG 299
+ + N+ L ALID+Y KC + ++A+ +FD + +++++ WN MI G+
Sbjct: 284 WIGSWVRDNGFGSNLQLTNALIDMYCKCGETDIARELFDGIEEKDVISWNTMIGGYSYLS 343
Query: 300 KPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKP 359
EE + LF ++ V P+++TF+G++ AC L G K+ ID
Sbjct: 344 LYEEALALFEVMLRSNV-----KPNDVTFLGILHACACLGALDLG-KWVHAYIDKNLRNS 397
Query: 360 NFAHYWC-MANLYAGAELTEEAEEILRKMPEDN 391
+ A W + ++YA E AE + R M N
Sbjct: 398 SNASLWTSLIDMYAKCGCIEAAERVFRSMHSRN 430
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 66/274 (24%), Positives = 117/274 (42%), Gaps = 35/274 (12%)
Query: 35 GSPDYTVLVFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLF 94
G D +F I N +I YS + ++ + + M+++ PN TF+ +
Sbjct: 312 GETDIARELFDGIEEKDVISWNTMIGGYSYLSLYEEALALFEVMLRSNVKPNDVTFLGIL 371
Query: 95 GSCAKTGCVERGGMCHGLALKNGVDFE-LPVMNSLINMYGCFGAMDCARNMFVQMSPRDL 153
+CA G ++ G H KN + + SLI+MY G ++ A +F M R+L
Sbjct: 372 HACACLGALDLGKWVHAYIDKNLRNSSNASLWTSLIDMYAKCGCIEAAERVFRSMHSRNL 431
Query: 154 ISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKS 213
SWN+ M+SG++ G+ +L LF EM+
Sbjct: 432 ASWNA-------------------------------MLSGFAMHGHAERALALFSEMVNK 460
Query: 214 G-FRGNDKTMASVLTACGRSARFNEGRSVHGYTVRT-SLKPNIILDTALIDLYSKCQKVE 271
G FR +D T VL+AC ++ + G ++ + P + +IDL ++ +K E
Sbjct: 461 GLFRPDDITFVGVLSACTQAGLVDLGHQYFRSMIQDYGISPKLQHYGCMIDLLARAEKFE 520
Query: 272 VAQRVFDSMA-DRNLVCWNAMILGHCIHGKPEEG 304
A+ + +M + + W +++ HG+ E G
Sbjct: 521 EAEILMKNMEMEPDGAIWGSLLSACKAHGRVEFG 554
>gi|224061246|ref|XP_002300388.1| predicted protein [Populus trichocarpa]
gi|222847646|gb|EEE85193.1| predicted protein [Populus trichocarpa]
Length = 514
Score = 260 bits (664), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 138/401 (34%), Positives = 218/401 (54%), Gaps = 10/401 (2%)
Query: 84 MPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARN 143
+P+++T + +C K V G HGL K G L + N ++N+YG G M A
Sbjct: 7 LPDTFTCSFVLKACLKLSDVVNGKTIHGLFQKLGFGSNLFLQNMILNLYGLCGEMGDAML 66
Query: 144 MFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCS 203
+F +M RD ++WN +++ + GD+ A+ F MP +NV SW MISG+ + G P +
Sbjct: 67 LFEKMPQRDAVTWNIVIAQLAKRGDIDGAYGFFLRMPNKNVRSWTSMISGFVQCGKPNEA 126
Query: 204 LKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDL 263
+ LF ++ R N+ T+ SVL AC + GR VH Y+ ++ K N+ + LID+
Sbjct: 127 IDLFMKLEDEAVRPNEVTVVSVLAACADLGDLDLGRIVHEYSTKSGFKRNVHVCNTLIDM 186
Query: 264 YSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISP 323
Y KC +E A+RVF M +R +V W+AMI G +HG+ EE + LF+ ++ + P
Sbjct: 187 YVKCGCLENARRVFYEMEERTVVSWSAMIAGLAMHGQAEEALCLFSEMIK-----LGVKP 241
Query: 324 DEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEI 383
+ +TFIG++ AC L+ EGR++F M Y + P HY C+ +L++ A L EEA E
Sbjct: 242 NGVTFIGLLHACSHMGLIDEGRRFFASMTADYGVIPQIEHYGCVVDLFSRAGLLEEAHEF 301
Query: 384 LRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYA 443
+ MP + ++W +LL C+ + + E K ++DP + Y + N+YA
Sbjct: 302 ILSMP-----IKPNGVVWGALLGGCKVHKNIDLAEEAIKHLSELDPLNDGYYVVISNIYA 356
Query: 444 VAGQWEDVARVRELMKKRRMGRMPGCRLVDLKEVVEKLKVG 484
A +WED ARVR+LMK R + + G + + VV + G
Sbjct: 357 EAERWEDAARVRKLMKDRGVKKTSGWSSITVNGVVHEFVAG 397
Score = 92.8 bits (229), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 75/294 (25%), Positives = 124/294 (42%), Gaps = 37/294 (12%)
Query: 23 WTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNG 82
W I ++ A G D F + N ++I + P++ + ++++
Sbjct: 79 WNI-VIAQLAKRGDIDGAYGFFLRMPNKNVRSWTSMISGFVQCGKPNEAIDLFMKLEDEA 137
Query: 83 FMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCAR 142
PN T VS+ +CA G ++ G + H + K+G + V N+LI+MY G ++ AR
Sbjct: 138 VRPNEVTVVSVLAACADLGDLDLGRIVHEYSTKSGFKRNVHVCNTLIDMYVKCGCLENAR 197
Query: 143 NMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGC 202
+F +M R ++SW++ MI+G + G
Sbjct: 198 RVFYEMEERTVVSWSA-------------------------------MIAGLAMHGQAEE 226
Query: 203 SLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHG-YTVRTSLKPNIILDTALI 261
+L LF EM+K G + N T +L AC +EGR T + P I ++
Sbjct: 227 ALCLFSEMIKLGVKPNGVTFIGLLHACSHMGLIDEGRRFFASMTADYGVIPQIEHYGCVV 286
Query: 262 DLYSKCQKVEVAQRVFDSMADR-NLVCWNAMILGHCIHGK---PEEGIKLFTAL 311
DL+S+ +E A SM + N V W A++ G +H EE IK + L
Sbjct: 287 DLFSRAGLLEEAHEFILSMPIKPNGVVWGALLGGCKVHKNIDLAEEAIKHLSEL 340
>gi|255574750|ref|XP_002528283.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223532320|gb|EEF34121.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 602
Score = 260 bits (664), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 140/426 (32%), Positives = 234/426 (54%), Gaps = 13/426 (3%)
Query: 56 NAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALK 115
N ++ AY+ S + + FY ++ + G N Y+F L C K +E HG L
Sbjct: 152 NTMVIAYAKSGFCNDALRFYRELRRLGIGYNEYSFAGLLNICVKVKELELSKQAHGQVLV 211
Query: 116 NGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHEL 175
G L + +S+++ Y M AR +F +M RD+++W ++VSG+ + GD+ AA EL
Sbjct: 212 AGFLSNLVISSSVLDAYAKCSEMGDARRLFDEMIIRDVLAWTTMVSGYAQWGDVEAAREL 271
Query: 176 FDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARF 235
FD+MPE+N V+W +I+GY++ +L+LF +MM R + T +S L A A
Sbjct: 272 FDLMPEKNPVAWTSLIAGYARHDLGHKALELFTKMMALNIRPDQFTFSSCLCASASIASL 331
Query: 236 NEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADR-NLVCWNAMILG 294
N G+ +HGY +RT+++PN I+ ++LID+YSKC +EV + VFD M D+ ++V WN +I
Sbjct: 332 NHGKQIHGYLIRTNIRPNTIVVSSLIDMYSKCGCLEVGRLVFDLMGDKWDVVLWNTIISS 391
Query: 295 HCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDF 354
HG+ +E I++F +V + PD IT I ++ AC + L+ EG + + +
Sbjct: 392 LAQHGRGQEAIQMFDDMVR-----LGMKPDRITLIVLLNACSHSGLVQEGLRLYESITSC 446
Query: 355 YKIKPNFAHYWCMANLYAGAELTEEAEEILRKMP-EDNDNMSFESIMWVSLLSLCRFQGA 413
+ + PN HY C+ +L A + L KMP + ND +W +LL +CR G
Sbjct: 447 HGVIPNQEHYACLIDLLGRAGHFDTLMNQLEKMPCKPNDE------IWNALLGVCRMHGN 500
Query: 414 VAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVD 473
+ +A+ +++DPQ + Y L +++A G+WE V VR+LM +R + + ++
Sbjct: 501 IEFGREVAEKIIELDPQSSAAYVLLSSIHAAVGRWELVENVRQLMNERHVRKDRAISWIE 560
Query: 474 LKEVVE 479
++ V
Sbjct: 561 IENKVH 566
Score = 154 bits (390), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 113/406 (27%), Positives = 191/406 (47%), Gaps = 36/406 (8%)
Query: 80 KNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELP---VMNSLINMYGCFG 136
+NG S T L CA T ++ G H L LK + P + N LINMY G
Sbjct: 43 RNGIRLPSKTLAYLLQQCANTKSLKLGKWVH-LHLK-VTGLKRPNTFLANHLINMYSKCG 100
Query: 137 AMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSK 196
A +F +MS R+L SWN ++SG+ + G + A +LFD MPE++VVSWN M+ Y+K
Sbjct: 101 DYPSAYKVFDEMSTRNLYSWNGMLSGYAKLGKIKPARKLFDKMPEKDVVSWNTMVIAYAK 160
Query: 197 SGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIIL 256
SG +L+ +RE+ + G N+ + A +L C + + HG + N+++
Sbjct: 161 SGFCNDALRFYRELRRLGIGYNEYSFAGLLNICVKVKELELSKQAHGQVLVAGFLSNLVI 220
Query: 257 DTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLF-------- 308
++++D Y+KC ++ A+R+FD M R+++ W M+ G+ G E +LF
Sbjct: 221 SSSVLDAYAKCSEMGDARRLFDEMIIRDVLAWTTMVSGYAQWGDVEAARELFDLMPEKNP 280
Query: 309 ---TALVNG---------------TVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQ 350
T+L+ G + +I PD+ TF +CA L G++
Sbjct: 281 VAWTSLIAGYARHDLGHKALELFTKMMALNIRPDQFTFSSCLCASASIASLNHGKQIHGY 340
Query: 351 MIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRF 410
+I I+PN + ++Y+ E + M + D + + +I+ SL R
Sbjct: 341 LIR-TNIRPNTIVVSSLIDMYSKCGCLEVGRLVFDLMGDKWDVVLWNTII-SSLAQHGRG 398
Query: 411 QGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRE 456
Q A+ M + + + + M P + LLN + +G ++ R+ E
Sbjct: 399 QEAIQMFDDMVR--LGMKPDRITLI-VLLNACSHSGLVQEGLRLYE 441
Score = 72.4 bits (176), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 42/143 (29%), Positives = 71/143 (49%), Gaps = 10/143 (6%)
Query: 210 MMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLK-PNIILDTALIDLYSKCQ 268
+ ++G R KT+A +L C + G+ VH + T LK PN L LI++YSKC
Sbjct: 41 LSRNGIRLPSKTLAYLLQQCANTKSLKLGKWVHLHLKVTGLKRPNTFLANHLINMYSKCG 100
Query: 269 KVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITF 328
A +VFD M+ RNL WN M+ G+ GK + KLF + D +++
Sbjct: 101 DYPSAYKVFDEMSTRNLYSWNGMLSGYAKLGKIKPARKLFDKMP---------EKDVVSW 151
Query: 329 IGVICACVRAELLTEGRKYFRQM 351
++ A ++ + +++R++
Sbjct: 152 NTMVIAYAKSGFCNDALRFYREL 174
Score = 69.3 bits (168), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 60/285 (21%), Positives = 124/285 (43%), Gaps = 14/285 (4%)
Query: 23 WTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNG 82
WT ++ A +G + +F + ++I Y+ + + + + +M+
Sbjct: 252 WT-TMVSGYAQWGDVEAARELFDLMPEKNPVAWTSLIAGYARHDLGHKALELFTKMMALN 310
Query: 83 FMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCAR 142
P+ +TF S + A + G HG ++ + V++SLI+MY G ++ R
Sbjct: 311 IRPDQFTFSSCLCASASIASLNHGKQIHGYLIRTNIRPNTIVVSSLIDMYSKCGCLEVGR 370
Query: 143 NMFVQMSPR-DLISWNSIVSGHVRSGDMSAAHELFDIM------PERNVVSWNIMISGYS 195
+F M + D++ WN+I+S + G A ++FD M P+R ++ ++++ S
Sbjct: 371 LVFDLMGDKWDVVLWNTIISSLAQHGRGQEAIQMFDDMVRLGMKPDR--ITLIVLLNACS 428
Query: 196 KSGNPGCSLKLFREMMK-SGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNI 254
SG L+L+ + G N + A ++ GR+ F+ ++ + KPN
Sbjct: 429 HSGLVQEGLRLYESITSCHGVIPNQEHYACLIDLLGRAGHFD---TLMNQLEKMPCKPND 485
Query: 255 ILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHG 299
+ AL+ + +E + V + + + + A +L IH
Sbjct: 486 EIWNALLGVCRMHGNIEFGREVAEKIIELDPQSSAAYVLLSSIHA 530
>gi|357167614|ref|XP_003581249.1| PREDICTED: pentatricopeptide repeat-containing protein At4g21300-like
[Brachypodium distachyon]
Length = 1430
Score = 259 bits (663), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 146/480 (30%), Positives = 252/480 (52%), Gaps = 18/480 (3%)
Query: 7 IQAH-LITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSNS 65
+Q H L++ + + LL A P+ VF+ + N++I Y +
Sbjct: 912 VQVHALVSKSPHAKDVYIGSALLDMYAKCEWPEEARRVFEAMPERNIVSWNSLITCYEQN 971
Query: 66 CVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVM 125
+ +V ++ M+K GF+P+ T S+ +CA G H +K+ E V+
Sbjct: 972 GPVGEALVLFVSMMKAGFVPDEVTLASVMSACAGLAADREGRQVHARVVKSDRFREDMVL 1031
Query: 126 -NSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNV 184
N+L++MY G AR +F +M+ R ++S S+++G+ RS ++ A +F M E+NV
Sbjct: 1032 SNALVDMYAKCGRTRAARCVFDRMASRSVVSETSLITGYARSANVEDAQMVFSQMVEKNV 1091
Query: 185 VSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGY 244
++WN++I+ Y+++G +L+LF + + T +VL ACG A G+ H +
Sbjct: 1092 IAWNVLIAAYAQNGEEEEALRLFVRLKRESVWPTHYTYGNVLNACGNVADLQLGQQAHVH 1151
Query: 245 TVRTSLK------PNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIH 298
++ + ++ + +L+D+Y K ++ +VF+ MA R+ V WNAMI+GH +
Sbjct: 1152 VLKEGFRFDFGPESDVFVGNSLVDMYLKTGSIDDGAKVFERMAARDNVSWNAMIVGHAQN 1211
Query: 299 GKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIK 358
G+ ++ + LF ++ SPD +T IGV+ AC + L+ EGR+YFR M + + I
Sbjct: 1212 GRAKDALHLFERMLCSKE-----SPDSVTMIGVLSACGHSGLVEEGRRYFRSMTEDHGII 1266
Query: 359 PNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVE 418
P+ HY CM +L A +E EE++++M +M ++++W SLL CR V M E
Sbjct: 1267 PSQDHYTCMIDLLGRAGHLKEVEELIKEM-----SMEPDAVLWASLLGSCRLHKNVEMGE 1321
Query: 419 RLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLKEVV 478
A ++DP++ Y L N+YA G+W DV RVR MK R + + PGC +++ V
Sbjct: 1322 WAAGKLFELDPRNSGPYVLLSNMYAELGKWADVFRVRSSMKHRGVSKQPGCSWIEIGRKV 1381
Score = 157 bits (398), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 102/373 (27%), Positives = 180/373 (48%), Gaps = 17/373 (4%)
Query: 43 VFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGC 102
F I P N +++ Y + + D V + +M+ G P YT +C
Sbjct: 208 AFDDILEPNAISWNVIVRRYHLAGMGDMAVDMFFRMLSAGVRPLGYTVSHAVLACRDNNA 267
Query: 103 VERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSG 162
+E G H L++G + + V +S+++MY GAMD A+++F +D++ SIVSG
Sbjct: 268 LEEGRCIHAFVLRHGYEHHVHVRSSVVDMYAKCGAMDAAQSLFNLAPMKDMVMSTSIVSG 327
Query: 163 HVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTM 222
G ++ A +F+ M ERN+VSWN M++GY +S + +L LF++M + + T+
Sbjct: 328 LASCGRIADAKRVFEGMKERNLVSWNAMLTGYIRSMDLTGALLLFQQMRQETREFDAITL 387
Query: 223 ASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQR--VFDSM 280
SVL+AC +G VH + ++ + IL AL+ +YSKC + A+R +F+
Sbjct: 388 GSVLSACTGILDIGKGEEVHAFAIKCGFFSSPILKNALVRMYSKCGCLRSAERLLLFEMG 447
Query: 281 ADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAEL 340
++R+ WN++I G+ H E + T + + ++P++ TF + AC L
Sbjct: 448 SERDSYSWNSLISGYERHSMSEAALYALTKMQS------EVTPNQSTFSSALAACANIFL 501
Query: 341 LTEGRKYFRQMI-DFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESI 399
L +G + MI Y+I + ++Y + + I P S + I
Sbjct: 502 LKQGMQIHAYMIRKGYEIDDILRS--VLIDMYCKCRQFDYSIRIFEARP------SRDVI 553
Query: 400 MWVSLLSLCRFQG 412
+W S++ C + G
Sbjct: 554 LWNSMIFGCAYSG 566
Score = 151 bits (382), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 109/402 (27%), Positives = 175/402 (43%), Gaps = 49/402 (12%)
Query: 43 VFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGC 102
VF+ + NA++ Y S ++ + QM + ++ T S+ +C
Sbjct: 340 VFEGMKERNLVSWNAMLTGYIRSMDLTGALLLFQQMRQETREFDAITLGSVLSACTGILD 399
Query: 103 VERGGMCHGLALKNGVDFELPVM-NSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVS 161
+ +G H A+K G F P++ N+L+ MY G + A +
Sbjct: 400 IGKGEEVHAFAIKCGF-FSSPILKNALVRMYSKCGCLRSAERLL---------------- 442
Query: 162 GHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKT 221
LF++ ER+ SWN +ISGY + +L +M +S N T
Sbjct: 443 -------------LFEMGSERDSYSWNSLISGYERHSMSEAALYALTKM-QSEVTPNQST 488
Query: 222 MASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMA 281
+S L AC +G +H Y +R + + IL + LID+Y KC++ + + R+F++
Sbjct: 489 FSSALAACANIFLLKQGMQIHAYMIRKGYEIDDILRSVLIDMYCKCRQFDYSIRIFEARP 548
Query: 282 DRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELL 341
R+++ WN+MI G GK E G+ LF + I D +TF+G + +C+ +
Sbjct: 549 SRDVILWNSMIFGCAYSGKGEYGLDLFDEMQK-----QGIKADSVTFLGALVSCISEGHV 603
Query: 342 TEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFE--SI 399
GR YF M+D I P HY CM L E E+ + MP FE +
Sbjct: 604 RLGRSYFTLMMD-ESIIPRIEHYECMIELLGKHGCMVELEDFVEHMP-------FEPTTA 655
Query: 400 MWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNV 441
MW+ + CR G + ER AK D +P + QF+ V
Sbjct: 656 MWLRIFDCCREYGNRKLGERAAKCINDSNP--LTPVQFVATV 695
Score = 133 bits (335), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 97/359 (27%), Positives = 157/359 (43%), Gaps = 68/359 (18%)
Query: 20 NSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMI 79
N+F LL A G P +F I +P NAVI A + ++F M
Sbjct: 825 NTFSYNALLSAHARLGRPADARALFHAIPDPDQCSYNAVIAALAQHSRGADALLFLAAMH 884
Query: 80 KNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMD 139
+ F+ N+Y+F S +CA G H L K+ ++ + ++L++MY +
Sbjct: 885 ADDFVLNAYSFASALSACAAEKDSRTGVQVHALVSKSPHAKDVYIGSALLDMYAKCEWPE 944
Query: 140 CARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGN 199
AR +F M R+++SWNS +I+ Y ++G
Sbjct: 945 EARRVFEAMPERNIVSWNS-------------------------------LITCYEQNGP 973
Query: 200 PGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTS-LKPNIILDT 258
G +L LF MMK+GF ++ T+ASV++AC A EGR VH V++ + +++L
Sbjct: 974 VGEALVLFVSMMKAGFVPDEVTLASVMSACAGLAADREGRQVHARVVKSDRFREDMVLSN 1033
Query: 259 ALIDLYSKCQK-------------------------------VEVAQRVFDSMADRNLVC 287
AL+D+Y+KC + VE AQ VF M ++N++
Sbjct: 1034 ALVDMYAKCGRTRAARCVFDRMASRSVVSETSLITGYARSANVEDAQMVFSQMVEKNVIA 1093
Query: 288 WNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRK 346
WN +I + +G+ EE ++LF L S+ P T+ V+ AC L G++
Sbjct: 1094 WNVLIAAYAQNGEEEEALRLFVRLKR-----ESVWPTHYTYGNVLNACGNVADLQLGQQ 1147
Score = 132 bits (331), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 90/347 (25%), Positives = 164/347 (47%), Gaps = 14/347 (4%)
Query: 114 LKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAH 173
LK+ E ++N+L++ Y G + AR +F ++ + S+N+++S H R G + A
Sbjct: 787 LKSPFVAETFLLNTLVSAYARLGRLPDARRVFDEIPHPNTFSYNALLSAHARLGRPADAR 846
Query: 174 ELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSA 233
LF +P+ + S+N +I+ ++ +L M F N + AS L+AC
Sbjct: 847 ALFHAIPDPDQCSYNAVIAALAQHSRGADALLFLAAMHADDFVLNAYSFASALSACAAEK 906
Query: 234 RFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMIL 293
G VH ++ ++ + +AL+D+Y+KC+ E A+RVF++M +RN+V WN++I
Sbjct: 907 DSRTGVQVHALVSKSPHAKDVYIGSALLDMYAKCEWPEEARRVFEAMPERNIVSWNSLIT 966
Query: 294 GHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMID 353
+ +G E + LF +++ PDE+T V+ AC EGR+ +++
Sbjct: 967 CYEQNGPVGEALVLFVSMMK-----AGFVPDEVTLASVMSACAGLAADREGRQVHARVVK 1021
Query: 354 FYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGA 413
+ + + + ++YA T A + D M+ S+ VS SL
Sbjct: 1022 SDRFREDMVLSNALVDMYAKCGRTRAARCVF-------DRMASRSV--VSETSLITGYAR 1072
Query: 414 VAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKK 460
A VE F M ++ + L+ YA G+ E+ R+ +K+
Sbjct: 1073 SANVEDAQMVFSQMVEKNVIAWNVLIAAYAQNGEEEEALRLFVRLKR 1119
Score = 115 bits (287), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 82/291 (28%), Positives = 138/291 (47%), Gaps = 23/291 (7%)
Query: 156 WNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGF 215
+N + G ++ A ELFD+MP R+ SWN +I+ S++G+P +L LF M G
Sbjct: 88 FNRAIESLAACGSVADARELFDLMPLRDGGSWNAIITASSRAGHPSEALSLFSNMNSLGI 147
Query: 216 RGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQR 275
R D TMASVL+ C R +HG+ + + N+IL TAL+D+Y C + A+R
Sbjct: 148 RPKDATMASVLSCCAECLDLCGARQLHGHIAKRDFQSNVILGTALVDVYGNCFLLADARR 207
Query: 276 VFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICAC 335
FD + + N + WN ++ + + G + + +F +++ V P T + AC
Sbjct: 208 AFDDILEPNAISWNVIVRRYHLAGMGDMAVDMFFRMLSAGV-----RPLGYTVSHAVLAC 262
Query: 336 VRAELLTEGRKYFRQMIDFYKIKPNFAHY----WCMANLYAGAELTEEAEEILRKMPEDN 391
L EGR I + ++ + H+ + ++YA + A+ + P +
Sbjct: 263 RDNNALEEGR-----CIHAFVLRHGYEHHVHVRSSVVDMYAKCGAMDAAQSLFNLAPMKD 317
Query: 392 DNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVY 442
MS SI VS L+ C G +A +R+ F M ++ + +L Y
Sbjct: 318 MVMS-TSI--VSGLASC---GRIADAKRV---FEGMKERNLVSWNAMLTGY 359
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 88/384 (22%), Positives = 152/384 (39%), Gaps = 83/384 (21%)
Query: 56 NAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGG--MCHGLA 113
NA+I A S + P + + + M G P T S+ CA+ C++ G HG
Sbjct: 120 NAIITASSRAGHPSEALSLFSNMNSLGIRPKDATMASVLSCCAE--CLDLCGARQLHGHI 177
Query: 114 LKNGVDFELPVMNSLINMYG-CFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAA 172
K + + +L+++YG CF D AR F + + ISWN IV
Sbjct: 178 AKRDFQSNVILGTALVDVYGNCFLLAD-ARRAFDDILEPNAISWNVIV------------ 224
Query: 173 HELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRS 232
Y +G ++ +F M+ +G R T++ + AC +
Sbjct: 225 -------------------RRYHLAGMGDMAVDMFFRMLSAGVRPLGYTVSHAVLACRDN 265
Query: 233 ARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQ------------------ 274
EGR +H + +R + ++ + ++++D+Y+KC ++ AQ
Sbjct: 266 NALEEGRCIHAFVLRHGYEHHVHVRSSVVDMYAKCGAMDAAQSLFNLAPMKDMVMSTSIV 325
Query: 275 -------------RVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSI 321
RVF+ M +RNLV WNAM+ G+ + LF + T
Sbjct: 326 SGLASCGRIADAKRVFEGMKERNLVSWNAMLTGYIRSMDLTGALLLFQQMRQETR----- 380
Query: 322 SPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMAN----LYAGAELT 377
D IT V+ AC + +G + + + IK F + N +Y+
Sbjct: 381 EFDAITLGSVLSACTGILDIGKGEE-----VHAFAIKCGFFSSPILKNALVRMYSKCGCL 435
Query: 378 EEAEEILR-KMPEDNDNMSFESIM 400
AE +L +M + D+ S+ S++
Sbjct: 436 RSAERLLLFEMGSERDSYSWNSLI 459
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 52/226 (23%), Positives = 90/226 (39%), Gaps = 32/226 (14%)
Query: 41 VLVFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKT 100
+L+F+ + ++ N++I Y + + ++ L +++ PN TF S +CA
Sbjct: 441 LLLFEMGSERDSYSWNSLISGYERHSM-SEAALYALTKMQSEVTPNQSTFSSALAACANI 499
Query: 101 GCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIV 160
+++G H ++ G + + + + LI+MY D + +F RD+I WNS++
Sbjct: 500 FLLKQGMQIHAYMIRKGYEIDDILRSVLIDMYCKCRQFDYSIRIFEARPSRDVILWNSMI 559
Query: 161 SGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDK 220
G YS G G L LF EM K G + +
Sbjct: 560 FG-----------------------------CAYSGKGEYG--LDLFDEMQKQGIKADSV 588
Query: 221 TMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSK 266
T L +C GRS + S+ P I +I+L K
Sbjct: 589 TFLGALVSCISEGHVRLGRSYFTLMMDESIIPRIEHYECMIELLGK 634
Score = 38.9 bits (89), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 31/138 (22%), Positives = 59/138 (42%), Gaps = 1/138 (0%)
Query: 1 MKQLLQIQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIK 60
+KQ +QI A++I G ++ ++ L+ DY++ +F+ + N++I
Sbjct: 502 LKQGMQIHAYMIRKGYEIDDILRSV-LIDMYCKCRQFDYSIRIFEARPSRDVILWNSMIF 560
Query: 61 AYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDF 120
+ S + G+ + +M K G +S TF+ SC G V G L + +
Sbjct: 561 GCAYSGKGEYGLDLFDEMQKQGIKADSVTFLGALVSCISEGHVRLGRSYFTLMMDESIIP 620
Query: 121 ELPVMNSLINMYGCFGAM 138
+ +I + G G M
Sbjct: 621 RIEHYECMIELLGKHGCM 638
>gi|356529553|ref|XP_003533355.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Glycine max]
Length = 540
Score = 259 bits (662), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 157/508 (30%), Positives = 269/508 (52%), Gaps = 23/508 (4%)
Query: 1 MKQLLQIQAHLITS-GLFFNNSFWTINLLKHSADF---GSPDYTVLVFKCINNPGTFCVN 56
+++L + ++ S L + ++ I L + F GS Y VF I NP N
Sbjct: 31 LRELKKTHTQILKSPTLHTGDQYYLITRLLYVCSFSYYGSFSYATNVFHMIKNPDLRAYN 90
Query: 57 AVIKAYSNSCVPD-----QGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHG 111
+I+AY + D + ++ Y QM +PN TF L C + G H
Sbjct: 91 IMIRAYISMESGDDTHFCKALMLYKQMFCKDIVPNCLTFPFLLKGCTQWLDGATGQAIHT 150
Query: 112 LALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSA 171
+K G ++ V NSLI++Y G + AR +F +M D+++WNS+V G +R+G +
Sbjct: 151 QVIKFGFLKDVYVANSLISLYMAGGLLSNARKVFDEMLVTDVVTWNSMVIGCLRNGGLDM 210
Query: 172 AHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREM--MKSGFRGNDK-TMASVLTA 228
A +LF M RN+++WN +I+G ++ G+ SL+LF EM + DK T+ASVL+A
Sbjct: 211 AMDLFRKMNGRNIITWNSIITGLAQGGSAKESLELFHEMQILSDDMVKPDKITIASVLSA 270
Query: 229 CGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCW 288
C + + G+ VHGY R ++ ++++ TAL+++Y KC V+ A +F+ M +++ W
Sbjct: 271 CAQLGAIDHGKWVHGYLRRNGIECDVVIGTALVNMYGKCGDVQKAFEIFEEMPEKDASAW 330
Query: 289 NAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYF 348
MI +HG G K F + AG + P+ +TF+G++ AC + L+ +GR F
Sbjct: 331 TVMISVFALHGL---GWKAFNCFLEMEKAG--VKPNHVTFVGLLSACAHSGLVEQGRWCF 385
Query: 349 RQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLC 408
M Y I+P HY CM ++ + A L +E+E ++R MP M + +W +LL C
Sbjct: 386 DVMKRVYSIEPQVYHYACMVDILSRARLFDESEILIRSMP-----MKPDVYVWGALLGGC 440
Query: 409 RFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRM-GRMP 467
+ G V + E++ +D++P + + Y ++YA AG ++ R+R +MK++R+ ++P
Sbjct: 441 QMHGNVELGEKVVHHLIDLEPHNHAFYVNWCDIYAKAGMFDAAKRIRNIMKEKRIEKKIP 500
Query: 468 GCRLVDLKEVVEKLKVGHFWRGGMKEEV 495
GC ++++ V++ G MKE V
Sbjct: 501 GCSMIEINGEVQEFSAGGSSELPMKELV 528
>gi|359495686|ref|XP_003635058.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At4g21065-like [Vitis vinifera]
Length = 540
Score = 259 bits (662), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 145/455 (31%), Positives = 226/455 (49%), Gaps = 41/455 (9%)
Query: 30 HSADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYT 89
H + G Y +F C ++P F N +I+ YS S P + Y M G PNSYT
Sbjct: 10 HPSPHGHVAYAHCIFSCTHHPNLFMWNTIIRGYSISDSPISAIALYKDMFLCGISPNSYT 69
Query: 90 FVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMS 149
F + +C K + G H +K G+DFE P++N LI +Y G MD A MF
Sbjct: 70 FGFVLNACCKLLRLCEGQELHSQIVKAGLDFETPLLNGLIKLYAACGCMDYACVMF---- 125
Query: 150 PRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFRE 209
D MPE + SW+ M+SGYS++G +LKL RE
Sbjct: 126 ---------------------------DEMPEPDSASWSTMVSGYSQNGQAVETLKLLRE 158
Query: 210 MMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQK 269
M + T+ASV+ CG + G+ VH Y + +K +++L TAL+ +YSKC
Sbjct: 159 MQAENVSSDAFTLASVVGVCGDLGVLDLGKWVHSYIDKEGVKIDVVLGTALVGMYSKCGS 218
Query: 270 VEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFI 329
++ A +VF MA+R++ W+ MI G+ IHG E+ ++LF A+ I P+ +TF
Sbjct: 219 LDNALKVFQGMAERDVTTWSIMIAGYAIHGHDEKALQLFDAMKR-----SKIIPNCVTFT 273
Query: 330 GVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPE 389
V+ A + L+ +G + F M YKI P HY CM +L+ A + A + ++ MP
Sbjct: 274 SVLSAYSHSGLVEKGHQIFETMWTEYKITPQIKHYGCMVDLFCRAGMVGHAHKFIQTMPI 333
Query: 390 DNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWE 449
+ + ++W +LL C+ G + E +++ + +DP Y F+ NVYA G+W
Sbjct: 334 EPN-----VVLWRTLLGACKTHGYKGLGEHISRKILKLDPSSPENYVFVSNVYASLGRWS 388
Query: 450 DVARVRELMKKRRMGRMPGCRLVDLKEVVEKLKVG 484
V +VR LMK++ + G +++ +V K +G
Sbjct: 389 SVCQVRSLMKEKAPKKQHGWSSIEINFMVHKFIMG 423
Score = 81.6 bits (200), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 69/298 (23%), Positives = 125/298 (41%), Gaps = 38/298 (12%)
Query: 6 QIQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSNS 65
++ + ++ +GL F L+K A G DY ++F + P + + ++ YS +
Sbjct: 88 ELHSQIVKAGLDFETPLLN-GLIKLYAACGCMDYACVMFDEMPEPDSASWSTMVSGYSQN 146
Query: 66 CVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVM 125
+ + +M +++T S+ G C G ++ G H K GV ++ +
Sbjct: 147 GQAVETLKLLREMQAENVSSDAFTLASVVGVCGDLGVLDLGKWVHSYIDKEGVKIDVVLG 206
Query: 126 NSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVV 185
+L+ MY G++D A +F M+ RD+ +W+ +++G+ G A +LFD M ++
Sbjct: 207 TALVGMYSKCGSLDNALKVFQGMAERDVTTWSIMIAGYAIHGHDEKALQLFDAMKRSKII 266
Query: 186 SWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYT 245
P C T SVL+A S +G + T
Sbjct: 267 --------------PNCV-----------------TFTSVLSAYSHSGLVEKGHQIFE-T 294
Query: 246 VRTSLK--PNIILDTALIDLYSKCQKVEVAQRVFDSMA-DRNLVCWNAMILGHC-IHG 299
+ T K P I ++DL+ + V A + +M + N+V W + LG C HG
Sbjct: 295 MWTEYKITPQIKHYGCMVDLFCRAGMVGHAHKFIQTMPIEPNVVLWRTL-LGACKTHG 351
>gi|186478293|ref|NP_172391.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75099767|sp|O80488.1|PPR23_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g09190
gi|3249103|gb|AAC24086.1| Contains similarity to membrane-associated salt-inducible protein
homolog TM021B04.10 gb|2191192 from A. thaliana BAC
gb|AF007271 [Arabidopsis thaliana]
gi|28393182|gb|AAO42022.1| unknown protein [Arabidopsis thaliana]
gi|332190289|gb|AEE28410.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 484
Score = 259 bits (662), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 153/467 (32%), Positives = 236/467 (50%), Gaps = 11/467 (2%)
Query: 3 QLLQIQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAY 62
+L +I AHL+ L +N + + + DY VF I NP NA+IK Y
Sbjct: 19 RLPEIHAHLLRHFLHGSN-LLLAHFISICGSLSNSDYANRVFSHIQNPNVLVFNAMIKCY 77
Query: 63 SNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFEL 122
S P + + F+ M G + YT+ L SC+ + G HG ++ G
Sbjct: 78 SLVGPPLESLSFFSSMKSRGIWADEYTYAPLLKSCSSLSDLRFGKCVHGELIRTGFHRLG 137
Query: 123 PVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPER 182
+ ++ +Y G M A+ +F +MS R+++ WN ++ G SGD+ LF M ER
Sbjct: 138 KIRIGVVELYTSGGRMGDAQKVFDEMSERNVVVWNLMIRGFCDSGDVERGLHLFKQMSER 197
Query: 183 NVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVH 242
++VSWN MIS SK G +L+LF EM+ GF ++ T+ +VL + G+ +H
Sbjct: 198 SIVSWNSMISSLSKCGRDREALELFCEMIDQGFDPDEATVVTVLPISASLGVLDTGKWIH 257
Query: 243 GYTVRTSL-KPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKP 301
+ L K I + AL+D Y K +E A +F M RN+V WN +I G ++GK
Sbjct: 258 STAESSGLFKDFITVGNALVDFYCKSGDLEAATAIFRKMQRRNVVSWNTLISGSAVNGKG 317
Query: 302 EEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNF 361
E GI LF A++ G ++P+E TF+GV+ C + G + F M++ +K++
Sbjct: 318 EFGIDLFDAMIE----EGKVAPNEATFLGVLACCSYTGQVERGEELFGLMMERFKLEART 373
Query: 362 AHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLA 421
HY M +L + + EA + L+ MP + + + MW SLLS CR G V + E A
Sbjct: 374 EHYGAMVDLMSRSGRITEAFKFLKNMPVNAN-----AAMWGSLLSACRSHGDVKLAEVAA 428
Query: 422 KSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPG 468
V ++P + Y L N+YA G+W+DV +VR LMKK R+ + G
Sbjct: 429 MELVKIEPGNSGNYVLLSNLYAEEGRWQDVEKVRTLMKKNRLRKSTG 475
>gi|347954520|gb|AEP33760.1| organelle transcript processing 82, partial [Capsella
bursa-pastoris]
Length = 706
Score = 259 bits (662), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 138/432 (31%), Positives = 229/432 (53%), Gaps = 45/432 (10%)
Query: 56 NAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALK 115
NA+I Y+ + + + + +M+K P+ T V++ +CA++ +E G H
Sbjct: 204 NALISGYAETGNYKEALELFKEMMKTNVKPDESTMVTVLSACAQSASIELGRQVHSWIDD 263
Query: 116 NGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHEL 175
+G L ++N+LI++Y ++ G++ A L
Sbjct: 264 HGFGSNLKIVNALIDLY-------------------------------IKCGEVETASGL 292
Query: 176 FDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARF 235
F+ + ++V+SWN +I GY+ +L LF+EM++SG N+ TM S+L AC
Sbjct: 293 FEGLSYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNEVTMLSILPACAHLGAI 352
Query: 236 NEGRSVHGYT---VRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMI 292
+ GR +H Y ++ P+ L T+LID+Y+KC +E AQ+VFDSM +R+L WNAMI
Sbjct: 353 DIGRWIHVYIDKRLKGVSNPSS-LRTSLIDMYAKCGDIEAAQQVFDSMLNRSLSSWNAMI 411
Query: 293 LGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMI 352
G +HG+ +F+ + I PD+ITF+G++ AC + +L GR FR M
Sbjct: 412 FGFAMHGRANPAFDIFSRMRKD-----GIEPDDITFVGLLSACSHSGMLDLGRHIFRSMT 466
Query: 353 DFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQG 412
+ YKI P HY CM +L + L +EAEE++ M D D ++W SLL C+ G
Sbjct: 467 EDYKITPKLEHYGCMIDLLGHSGLFKEAEEMINSMEMDPDG-----VIWCSLLKACKMHG 521
Query: 413 AVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLV 472
V + E A++ + ++P++ Y L N+YA AG+W +VA+ R L+ + M ++PGC +
Sbjct: 522 NVELGESFAQNLIKIEPKNSGSYVLLSNIYATAGRWNEVAKRRALLNDKGMKKVPGCSSI 581
Query: 473 DLKEVVEKLKVG 484
++ VV + +G
Sbjct: 582 EIDSVVHEFIIG 593
Score = 216 bits (549), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 119/348 (34%), Positives = 193/348 (55%), Gaps = 9/348 (2%)
Query: 1 MKQLLQIQAHLITSGLFFNNSFWTINLLKHSA---DFGSPDYTVLVFKCINNPGTFCVNA 57
++ L I A +I +GL N ++ L++ S F Y + VF I P N
Sbjct: 15 LQSLRIIHAKMIKTGLH-NTNYALSKLIEFSVLSPHFDGLTYAISVFDSIQEPNLLIWNT 73
Query: 58 VIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNG 117
+ + ++ S P + Y+ MI G +PNSYTF L +CAK+ G HG LK G
Sbjct: 74 MFRGHALSSDPVSALYLYVCMISLGLVPNSYTFPFLLKACAKSKAFREGQQIHGHVLKLG 133
Query: 118 VDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFD 177
D +L V SLI MY G + AR +F Q S RD++S+ +++ G+ +G + +A ++FD
Sbjct: 134 CDLDLYVHTSLIAMYVKNGRXEDARKVFDQSSHRDVVSYTALIKGYASNGYIXSAQKMFD 193
Query: 178 IMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNE 237
+P ++VVSWN +ISGY+++GN +L+LF+EMMK+ + ++ TM +VL+AC +SA
Sbjct: 194 EIPVKDVVSWNALISGYAETGNYKEALELFKEMMKTNVKPDESTMVTVLSACAQSASIEL 253
Query: 238 GRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCI 297
GR VH + N+ + ALIDLY KC +VE A +F+ ++ ++++ WN +I G+
Sbjct: 254 GRQVHSWIDDHGFGSNLKIVNALIDLYIKCGEVETASGLFEGLSYKDVISWNTLIGGYTH 313
Query: 298 HGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGR 345
+E + LF ++ SP+E+T + ++ AC + GR
Sbjct: 314 MNLYKEALLLFQEMLR-----SGESPNEVTMLSILPACAHLGAIDIGR 356
Score = 98.2 bits (243), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 65/240 (27%), Positives = 115/240 (47%), Gaps = 29/240 (12%)
Query: 158 SIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRG 217
S++S H ++ A +FD + E N++ WN M G++ S +P +L L+ M+ G
Sbjct: 44 SVLSPHFDG--LTYAISVFDSIQEPNLLIWNTMFRGHALSSDPVSALYLYVCMISLGLVP 101
Query: 218 NDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVF 277
N T +L AC +S F EG+ +HG+ ++ ++ + T+LI +Y K + E A++VF
Sbjct: 102 NSYTFPFLLKACAKSKAFREGQQIHGHVLKLGCDLDLYVHTSLIAMYVKNGRXEDARKVF 161
Query: 278 DSMADRNLVCWNAMILGHCIHGKPEEGIKLF-----------TALVNGTVAGGS------ 320
D + R++V + A+I G+ +G K+F AL++G G+
Sbjct: 162 DQSSHRDVVSYTALIKGYASNGYIXSAQKMFDEIPVKDVVSWNALISGYAETGNYKEALE 221
Query: 321 ---------ISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLY 371
+ PDE T + V+ AC ++ + GR+ ID + N + +LY
Sbjct: 222 LFKEMMKTNVKPDESTMVTVLSACAQSASIELGRQ-VHSWIDDHGFGSNLKIVNALIDLY 280
Score = 40.4 bits (93), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 52/215 (24%), Positives = 92/215 (42%), Gaps = 18/215 (8%)
Query: 19 NNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQM 78
N S +L+ A G + VF + N NA+I ++ + + +M
Sbjct: 371 NPSSLRTSLIDMYAKCGDIEAAQQVFDSMLNRSLSSWNAMIFGFAMHGRANPAFDIFSRM 430
Query: 79 IKNGFMPNSYTFVSLFGSCAKTGCVERG-GMCHGLALKNGVDFELPVMNSLINMYGCFGA 137
K+G P+ TFV L +C+ +G ++ G + + + +L +I++ G G
Sbjct: 431 RKDGIEPDDITFVGLLSACSHSGMLDLGRHIFRSMTEDYKITPKLEHYGCMIDLLGHSGL 490
Query: 138 MDCARNMF--VQMSPRDLISWNSIVS-----GHVRSGDMSAAHELFDIMPERNVVSWNIM 190
A M ++M P D + W S++ G+V G+ S A L I P +N S+ ++
Sbjct: 491 FKEAEEMINSMEMDP-DGVIWCSLLKACKMHGNVELGE-SFAQNLIKIEP-KNSGSYVLL 547
Query: 191 ISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASV 225
+ Y+ +G + E+ K NDK M V
Sbjct: 548 SNIYATAGR-------WNEVAKRRALLNDKGMKKV 575
>gi|347954540|gb|AEP33770.1| organelle transcript processing 82, partial [Raphanus sativus]
Length = 675
Score = 259 bits (662), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 143/448 (31%), Positives = 231/448 (51%), Gaps = 47/448 (10%)
Query: 43 VFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGC 102
VF I NA+I Y + ++ + + +M++ P+ T VS+ +CA++G
Sbjct: 152 VFDEITERDVVSWNAMITGYVENGRYEEALELFKEMMRTNVRPDEGTLVSVVSACAQSGS 211
Query: 103 VERGGMCHG----LALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNS 158
+E G H +G L ++N+LI++Y
Sbjct: 212 IELGRQVHSWVDDDDDDHGFSSSLKIVNALIDLYS------------------------- 246
Query: 159 IVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGN 218
+ GD+ A LF+ + ++VVSWN +I GY+ + +L LF+EM++SG N
Sbjct: 247 ------KCGDVETAFGLFEGLSCKDVVSWNTLIGGYTHTNLYKEALLLFQEMLRSGECPN 300
Query: 219 DKTMASVLTACGRSARFNEGRSVHGYTVRT--SLKPNIILDTALIDLYSKCQKVEVAQRV 276
D T+ SVL AC + GR +H Y + + L T+LID+Y+KC +E A +V
Sbjct: 301 DVTLLSVLPACAHLGAIDIGRWIHVYIDKKLKGVTNETSLRTSLIDMYAKCGDIEAAHQV 360
Query: 277 FDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACV 336
F+SM R+L WNAMI G +HG+ LF+ + G + PD+ITF+G++ AC
Sbjct: 361 FNSMLYRSLSSWNAMIFGFAMHGRANAAFDLFSRM-----RGNRVEPDDITFVGLLSACS 415
Query: 337 RAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSF 396
+ LL GR+ F+ M Y + P HY CM +L + L +EAEE++ MP + D
Sbjct: 416 HSGLLDLGRQIFKSMTQDYNLTPKLEHYGCMIDLLGHSGLFKEAEEMIHTMPMEPDG--- 472
Query: 397 ESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRE 456
++W SLL C+ G + + E A+ + ++P++ Y L N+YA AG+WEDVARVR
Sbjct: 473 --VIWCSLLKACKKHGNLELAESFAQKLIKIEPENSGSYVLLSNIYATAGRWEDVARVRG 530
Query: 457 LMKKRRMGRMPGCRLVDLKEVVEKLKVG 484
++ + M ++PGC +++ VV + +G
Sbjct: 531 VLNGKGMKKVPGCSSIEVDSVVHEFIIG 558
Score = 197 bits (500), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 106/319 (33%), Positives = 175/319 (54%), Gaps = 9/319 (2%)
Query: 31 SADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTF 90
S F Y + VF+ I P N +++ +++S P + Y++M+ G +PNSY+F
Sbjct: 8 SPHFDGLPYAISVFETIQEPNLLIWNTMLRGHASSSDPVSALEMYVRMVSLGHLPNSYSF 67
Query: 91 VSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSP 150
L SCAK+ E G H LK G + V SLI+MY G ++ AR +F S
Sbjct: 68 PFLLKSCAKSKAFEEGRQIHAQVLKLGCGLDRYVHTSLISMYARNGGLEDARKVFDASSH 127
Query: 151 RDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREM 210
RD++S ++++G+ GD +A ++FD + ER+VVSWN MI+GY ++G +L+LF+EM
Sbjct: 128 RDVVSCTALITGYASRGDFRSARKVFDEITERDVVSWNAMITGYVENGRYEEALELFKEM 187
Query: 211 MKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRT----SLKPNIILDTALIDLYSK 266
M++ R ++ T+ SV++AC +S GR VH + ++ + ALIDLYSK
Sbjct: 188 MRTNVRPDEGTLVSVVSACAQSGSIELGRQVHSWVDDDDDDHGFSSSLKIVNALIDLYSK 247
Query: 267 CQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEI 326
C VE A +F+ ++ +++V WN +I G+ +E + LF ++ P+++
Sbjct: 248 CGDVETAFGLFEGLSCKDVVSWNTLIGGYTHTNLYKEALLLFQEMLRSGEC-----PNDV 302
Query: 327 TFIGVICACVRAELLTEGR 345
T + V+ AC + GR
Sbjct: 303 TLLSVLPACAHLGAIDIGR 321
Score = 95.9 bits (237), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 57/219 (26%), Positives = 107/219 (48%), Gaps = 38/219 (17%)
Query: 159 IVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGN 218
+VS H + A +F+ + E N++ WN M+ G++ S +P +L+++ M+ G N
Sbjct: 6 VVSPHFDG--LPYAISVFETIQEPNLLIWNTMLRGHASSSDPVSALEMYVRMVSLGHLPN 63
Query: 219 DKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFD 278
+ +L +C +S F EGR +H ++ + + T+LI +Y++ +E A++VFD
Sbjct: 64 SYSFPFLLKSCAKSKAFEEGRQIHAQVLKLGCGLDRYVHTSLISMYARNGGLEDARKVFD 123
Query: 279 S-------------------------------MADRNLVCWNAMILGHCIHGKPEEGIKL 307
+ + +R++V WNAMI G+ +G+ EE ++L
Sbjct: 124 ASSHRDVVSCTALITGYASRGDFRSARKVFDEITERDVVSWNAMITGYVENGRYEEALEL 183
Query: 308 FTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRK 346
F ++ V PDE T + V+ AC ++ + GR+
Sbjct: 184 FKEMMRTNV-----RPDEGTLVSVVSACAQSGSIELGRQ 217
Score = 43.5 bits (101), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 38/188 (20%), Positives = 85/188 (45%), Gaps = 16/188 (8%)
Query: 273 AQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVI 332
A VF+++ + NL+ WN M+ GH P ++++ +V + G + P+ +F ++
Sbjct: 17 AISVFETIQEPNLLIWNTMLRGHASSSDPVSALEMYVRMV----SLGHL-PNSYSFPFLL 71
Query: 333 CACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDND 392
+C +++ EGR+ Q++ + H + ++YA E+A ++ D
Sbjct: 72 KSCAKSKAFEEGRQIHAQVLKLGCGLDRYVHT-SLISMYARNGGLEDARKVF-------D 123
Query: 393 NMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVA 452
S + VS +L + K F ++ +D + ++ Y G++E+
Sbjct: 124 ASSHRDV--VSCTALITGYASRGDFRSARKVFDEITERDVVSWNAMITGYVENGRYEEAL 181
Query: 453 RV-RELMK 459
+ +E+M+
Sbjct: 182 ELFKEMMR 189
>gi|357503973|ref|XP_003622275.1| Pentatricopeptide repeat protein [Medicago truncatula]
gi|355497290|gb|AES78493.1| Pentatricopeptide repeat protein [Medicago truncatula]
Length = 541
Score = 259 bits (662), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 157/504 (31%), Positives = 277/504 (54%), Gaps = 34/504 (6%)
Query: 1 MKQLLQIQAHLITSGLFFN-NSFWTINLLKHS---ADFGSPDYTVLVFKCINNPGTFCVN 56
+K++ I H++ S + + ++ L + +++ S +Y VF I P N
Sbjct: 32 LKEIKIIHTHILKSPILHTRDQYYLFTRLLYFCSFSNYASFNYANNVFHMIKYPELRVYN 91
Query: 57 AVIKAY--------SNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKT---GCVER 105
+I++Y SN C + ++ Y QM+ G +PN+ TF L C++ G V
Sbjct: 92 IMIRSYGCIEGGDDSNCCY--KALMLYKQMLNKGIVPNNLTFPFLVKGCSRLQYGGTV-- 147
Query: 106 GGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVR 165
G + H LK G ++ V NSLI+++ FG AR +F +M RD++SWNS+V G++R
Sbjct: 148 GEVIHAHVLKFGFLNDVFVGNSLISLFMNFGLSKNARKVFDEMFVRDVVSWNSMVVGYLR 207
Query: 166 SGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREM-MKSG---FRGNDKT 221
+G++ A LF M RN+++WN +I+G ++G+ SL++F EM SG + + T
Sbjct: 208 NGEVEMALNLFRKMNGRNIITWNSIITGLVQAGHAKESLEIFHEMQFLSGDDVVKPDKIT 267
Query: 222 MASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMA 281
+ASVL+AC + G+ VH Y + ++ ++++ TAL+++Y KC V+ A +F+ M
Sbjct: 268 IASVLSACALLGSIDHGKWVHAYLRKNDIECDVVIGTALVNMYGKCGDVQQAIEIFNDMP 327
Query: 282 DRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELL 341
+++ W AMI +HG G K F + AG + P+ +TF+G++ AC + L+
Sbjct: 328 EKDASAWTAMISVFALHGF---GKKAFDCFLEMEKAG--VKPNHVTFVGLLSACSHSGLV 382
Query: 342 TEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMW 401
+GR F M Y I+P HY CM ++ + A L +EA ++R MP M + +W
Sbjct: 383 EQGRCCFDVMKRVYSIEPQIYHYACMVDILSRARLFDEALFLIRSMP-----MKPDVYVW 437
Query: 402 VSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKR 461
+LL C+ G + + E++A +D++P + + Y L ++Y AG+++ R+R MK+R
Sbjct: 438 GALLGGCQMHGNIKLGEKVAHYLIDLEPHNHAFYINLCDIYVKAGKYDAAKRIRNSMKER 497
Query: 462 RM-GRMPGCRLVDLKEVVEKLKVG 484
+ ++PGC ++++ VV++ VG
Sbjct: 498 GIETKIPGCSIIEINGVVQEFSVG 521
>gi|225423499|ref|XP_002274432.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Vitis vinifera]
Length = 738
Score = 259 bits (661), Expect = 4e-66, Method: Compositional matrix adjust.
Identities = 142/430 (33%), Positives = 226/430 (52%), Gaps = 42/430 (9%)
Query: 56 NAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALK 115
NA+I Y+ S ++ + F+ +M + PN T V++ +CA++G +E G
Sbjct: 233 NAMIAGYAQSGRFEEALAFFQEMKRANVAPNESTMVTVLSACAQSGSLELGNWVRSWIED 292
Query: 116 NGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHEL 175
+G+ L ++N+LI+MY + GD+ A +L
Sbjct: 293 HGLGSNLRLVNALIDMYS-------------------------------KCGDLDKARDL 321
Query: 176 FDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARF 235
F+ + E++++SWN+MI GYS + +L LFR+M +S ND T S+L AC
Sbjct: 322 FEGICEKDIISWNVMIGGYSHMNSYKEALALFRKMQQSNVEPNDVTFVSILPACAYLGAL 381
Query: 236 NEGRSVHGYTVRTSLK-PNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILG 294
+ G+ +H Y + L N L T+LID+Y+KC +E A++VF M ++L WNAMI G
Sbjct: 382 DLGKWIHAYIDKKFLGLTNTSLWTSLIDMYAKCGNIEAAKQVFAGMKPKSLGSWNAMISG 441
Query: 295 HCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDF 354
+HG ++LF + + PD+ITF+GV+ AC A L+ GR+ F M++
Sbjct: 442 LAMHGHANMALELFRQMRDE-----GFEPDDITFVGVLSACSHAGLVELGRQCFSSMVED 496
Query: 355 YKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAV 414
Y I P HY CM +L A L +EAE +++ M M + +W SLL CR G V
Sbjct: 497 YDISPKLQHYGCMIDLLGRAGLFDEAEALMKNM-----EMKPDGAIWGSLLGACRVHGNV 551
Query: 415 AMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDL 474
+ E AK +++P++ Y L N+YA AG+W+DVAR+R + + M ++PGC +++
Sbjct: 552 ELGEFAAKHLFELEPENPGAYVLLSNIYATAGRWDDVARIRTKLNDKGMKKVPGCSSIEV 611
Query: 475 KEVVEKLKVG 484
VV + VG
Sbjct: 612 DSVVHEFLVG 621
Score = 217 bits (553), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 154/522 (29%), Positives = 253/522 (48%), Gaps = 51/522 (9%)
Query: 2 KQLLQIQAHLITSGLFFNNSFWTINLLKHSA--DFGSPDYTVLVFKCINNPGTFCVNAVI 59
+ L QI + +I +GL N F L++ A FG+ Y +L+F+ I P F N +I
Sbjct: 46 QNLKQIHSQIIKTGLH-NTQFALSKLIEFCAISPFGNLSYALLLFESIEQPNQFIWNTMI 104
Query: 60 KAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVD 119
+ S S P + FY++M+ G PNSYTF L SCAK G + G HG LK G++
Sbjct: 105 RGNSLSSSPVGAIDFYVRMLLCGVEPNSYTFPFLLKSCAKVGATQEGKQIHGHVLKLGLE 164
Query: 120 FELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIM 179
+ V SLINMY G + A +F + S RD +S+ ++++G+ G + A LF+ +
Sbjct: 165 SDPFVHTSLINMYAQNGELGYAELVFSKSSLRDAVSFTALITGYTLRGCLDDARRLFEEI 224
Query: 180 PERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGR 239
P R+ VSWN MI+GY++SG +L F+EM ++ N+ TM +VL+AC +S G
Sbjct: 225 PVRDAVSWNAMIAGYAQSGRFEEALAFFQEMKRANVAPNESTMVTVLSACAQSGSLELGN 284
Query: 240 SVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHG 299
V + L N+ L ALID+YSKC ++ A+ +F+ + +++++ WN MI G+
Sbjct: 285 WVRSWIEDHGLGSNLRLVNALIDMYSKCGDLDKARDLFEGICEKDIISWNVMIGGYSHMN 344
Query: 300 KPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKP 359
+E + LF + V P+++TF+ ++ AC L G K+ ID +
Sbjct: 345 SYKEALALFRKMQQSNV-----EPNDVTFVSILPACAYLGALDLG-KWIHAYIDKKFLGL 398
Query: 360 NFAHYWC-MANLYAGAELTEEAEEILRKMP----------------EDNDNMSFE----- 397
W + ++YA E A+++ M + NM+ E
Sbjct: 399 TNTSLWTSLIDMYAKCGNIEAAKQVFAGMKPKSLGSWNAMISGLAMHGHANMALELFRQM 458
Query: 398 --------SIMWVSLLSLCRFQGAVAMVERLAKSFV---DMDPQDFSRYQFLLNVYAVAG 446
I +V +LS C G V + + S V D+ P+ Y ++++ AG
Sbjct: 459 RDEGFEPDDITFVGVLSACSHAGLVELGRQCFSSMVEDYDISPK-LQHYGCMIDLLGRAG 517
Query: 447 QWEDVARVRELMKKRRMGRMPG-----CRL---VDLKEVVEK 480
+++ + + M+ + G + G CR+ V+L E K
Sbjct: 518 LFDEAEALMKNMEMKPDGAIWGSLLGACRVHGNVELGEFAAK 559
>gi|449487105|ref|XP_004157498.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Cucumis sativus]
Length = 555
Score = 258 bits (660), Expect = 4e-66, Method: Compositional matrix adjust.
Identities = 155/495 (31%), Positives = 251/495 (50%), Gaps = 20/495 (4%)
Query: 2 KQLLQIQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKA 61
+ L +I A ++ SG F ++ +LL FGS VF+ I P T N +IK
Sbjct: 41 RNLAKIHAQIVVSG-FSQKNYILNHLLSLYISFGSLGSAQKVFEDITAPSTTVWNQIIKG 99
Query: 62 YSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFE 121
++ S + + + +M G N +T+ L +C ++ G HG L NG
Sbjct: 100 HTRSKTSKKSIELFKRMTLAGVEANGFTYSFLLSACVRSRLFREGEQIHGRVLVNGYWSN 159
Query: 122 LPVMNSLINMY---GCFGAMDC--ARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELF 176
L V +LIN+Y G G D AR +F +M +++ WNS+++G+VR GD A ++F
Sbjct: 160 LYVRTNLINLYANGGDGGDFDLKRARYLFDEMPDSNVVGWNSLLAGYVRRGDFDGARKVF 219
Query: 177 DIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFN 236
D MPERNV +W IM++G++++G +L LF +M ++G + + + L+AC
Sbjct: 220 DEMPERNVRTWTIMVAGFAQNGQCKLALSLFDQMRRAGVELDQVALVAALSACAELGDLT 279
Query: 237 EGRSVHGYTVRT----SLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMI 292
G+ +HGY RT L + L+ ALI +Y+ C +++A +VF+ + RN V W+++I
Sbjct: 280 LGKWIHGYVERTWRSRHLPVLVSLNNALIHMYASCGVMDLAYKVFEEIPQRNTVSWSSII 339
Query: 293 LGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMI 352
G G E I++F ++ + PDEITFIG + AC A L+++G + F+ M
Sbjct: 340 TGFAKQGCGVEAIRIFQLML--CSGQNEVRPDEITFIGALTACSHAGLISDGIRLFQSMH 397
Query: 353 DFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQG 412
+ + P HY CM +L + A L EA ++ MP +N +W +LLS CR
Sbjct: 398 KTFGVIPQIEHYGCMVDLLSRAGLLTEALSLIESMPMKPNNA-----VWGALLSGCRLHK 452
Query: 413 AVAMVERLAKSF---VDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGC 469
+V +AK + + Q + L NVYA G+W+D A VR M + + G
Sbjct: 453 NDEIVSHVAKHLSFEIHPNNQAAGYFMLLANVYAADGRWQDTATVRRNMHDIGVKKPSGR 512
Query: 470 RLVDLKEVVEKLKVG 484
+++ V+ VG
Sbjct: 513 SWIEINGVLCSFMVG 527
Score = 52.8 bits (125), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 60/250 (24%), Positives = 105/250 (42%), Gaps = 45/250 (18%)
Query: 223 ASVLTACGRSAR---------------FNEGRSVHGYTVRTSLKPNIILDTALIDLYSKC 267
A+ ++A GRS+R F +H V + + L+ LY
Sbjct: 13 ATAISAIGRSSRVRQQFIFSVLKSCVSFRNLAKIHAQIVVSGFSQKNYILNHLLSLYISF 72
Query: 268 QKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEIT 327
+ AQ+VF+ + + WN +I GH ++ I+LF + T+AG + + T
Sbjct: 73 GSLGSAQKVFEDITAPSTTVWNQIIKGHTRSKTSKKSIELFKRM---TLAG--VEANGFT 127
Query: 328 FIGVICACVRAELLTEGRK-YFRQMIDFYKIKPNFAHYWCMANLYA----GAELT-EEAE 381
+ ++ ACVR+ L EG + + R +++ Y N + NLYA G + + A
Sbjct: 128 YSFLLSACVRSRLFREGEQIHGRVLVNGY--WSNLYVRTNLINLYANGGDGGDFDLKRAR 185
Query: 382 EILRKMPEDNDNMSFESIMWVSLLS----LCRFQGAVAMVERLAKSFVDMDPQDFSRYQF 437
+ +MP+ N + W SLL+ F GA K F +M ++ +
Sbjct: 186 YLFDEMPDSN------VVGWNSLLAGYVRRGDFDGA-------RKVFDEMPERNVRTWTI 232
Query: 438 LLNVYAVAGQ 447
++ +A GQ
Sbjct: 233 MVAGFAQNGQ 242
>gi|297743898|emb|CBI36868.3| unnamed protein product [Vitis vinifera]
Length = 541
Score = 258 bits (659), Expect = 5e-66, Method: Compositional matrix adjust.
Identities = 149/442 (33%), Positives = 231/442 (52%), Gaps = 50/442 (11%)
Query: 52 TFCVNAVIKAYSNSCVPDQG-----VVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERG 106
+F N +I+A+ + G + +++M +G P+ +TF L S A + G
Sbjct: 24 SFLWNTLIRAHVQARAQPTGPTHSPISIFVRMRFHGVQPDFHTFPFLLQSFASPSLLHLG 83
Query: 107 GMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRS 166
H L+ G+ + V SLI+MY G +D ARN
Sbjct: 84 RSVHAQILRFGLAIDPFVQTSLISMYSSSGLVDMARN----------------------- 120
Query: 167 GDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGF---RGNDKTMA 223
LF +MPERNV+SW+ MI+GY + G +L LFREM G R N+ TM+
Sbjct: 121 --------LFAVMPERNVISWSCMINGYVRCGQYKEALALFREMQMLGVNDVRPNEFTMS 172
Query: 224 SVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMA-D 282
VL ACGR G+ H Y + + +++L TALID+Y+KC VE A VF ++ +
Sbjct: 173 GVLAACGRLGALEHGKWAHAYIDKCGMPVDVVLGTALIDMYAKCGSVEKATWVFSNLGPN 232
Query: 283 RNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLT 342
++++ W+AMI G +HG EE + LF+ ++N + P+ +TF+ V CACV L++
Sbjct: 233 KDVMAWSAMISGLAMHGLAEECVGLFSKMINQ-----GVRPNAVTFLAVFCACVHGGLVS 287
Query: 343 EGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWV 402
EG+ Y R+M + Y I P HY CM +LY A +EA +++ MP + D ++W
Sbjct: 288 EGKDYLRRMTEDYSIIPTIQHYGCMVDLYGRAGRIKEAWNVVKSMPMEPD-----VLVWG 342
Query: 403 SLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRR 462
+LLS R G + E K ++++P + Y L NVYA G+WEDV VR+LM+
Sbjct: 343 ALLSGSRMHGDIETCELALKKLIELEPTNSGAYVLLSNVYAKRGRWEDVRHVRDLMETMG 402
Query: 463 MGRMPGCRLVDLKEVVEKLKVG 484
+ ++PGC L+++ V+ + VG
Sbjct: 403 IKKVPGCSLIEVGGVLHEFFVG 424
Score = 47.8 bits (112), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 52/223 (23%), Positives = 97/223 (43%), Gaps = 35/223 (15%)
Query: 27 LLKHSADFGSPDYTVLVFKCIN-NPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMP 85
L+ A GS + VF + N +A+I + + ++ V + +MI G P
Sbjct: 209 LIDMYAKCGSVEKATWVFSNLGPNKDVMAWSAMISGLAMHGLAEECVGLFSKMINQGVRP 268
Query: 86 NSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFE-LPVMNS---LINMYGCFGAMDCA 141
N+ TF+++F +C G V G + D+ +P + ++++YG G + A
Sbjct: 269 NAVTFLAVFCACVHGGLVSEG---KDYLRRMTEDYSIIPTIQHYGCMVDLYGRAGRIKEA 325
Query: 142 RNMF--VQMSPRDLISWNSIVSGHVRSGDMS----AAHELFDIMPERNVVSWNIMISGYS 195
N+ + M P D++ W +++SG GD+ A +L ++ P N ++ ++ + Y+
Sbjct: 326 WNVVKSMPMEP-DVLVWGALLSGSRMHGDIETCELALKKLIELEPT-NSGAYVLLSNVYA 383
Query: 196 KSGN-------------------PGCSLKLFREMMKSGFRGND 219
K G PGCSL ++ F G+D
Sbjct: 384 KRGRWEDVRHVRDLMETMGIKKVPGCSLIEVGGVLHEFFVGDD 426
>gi|125557011|gb|EAZ02547.1| hypothetical protein OsI_24658 [Oryza sativa Indica Group]
Length = 635
Score = 258 bits (659), Expect = 5e-66, Method: Compositional matrix adjust.
Identities = 148/468 (31%), Positives = 248/468 (52%), Gaps = 23/468 (4%)
Query: 38 DYTVLVFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSC 97
D TV + + +P T + I A+S+ + + +M+ G +P S+T S +C
Sbjct: 84 DLTVTLLRLTPDPTTVFYTSAIHAHSSRGLHLAALALLSEMLGRGLIPTSHTLSSSLPAC 143
Query: 98 AKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWN 157
+ G H A K + + V +L+ MY G D AR +F +M ++
Sbjct: 144 HG---LALGRALHAYAFKLALAGDSYVATALLGMYARGGDADAARALFDEMPDPHVVPVT 200
Query: 158 SIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRG 217
++++ + + G + A ELFD MP ++ + WN MI GY++ G P +L+LFR M++SG
Sbjct: 201 AMLTCYAKMGALDDARELFDGMPSKDFICWNAMIDGYTQHGRPNEALRLFRWMLRSGVDP 260
Query: 218 NDKTMASVLTACGRSARFNEGRSVHGYTVRT-SLKPNIILDTALIDLYSKCQKVEVAQRV 276
++ + L+A + GR +H Y + ++ N + TALID+Y KC +E A V
Sbjct: 261 DEVAIILALSAVAQLGTAESGRWLHSYVKNSRRVQLNARVGTALIDMYCKCGSLEDAVSV 320
Query: 277 FDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACV 336
F+S+ D+++V WNAMI G+ +HG + +++F+ L + + P +ITFIG++ AC
Sbjct: 321 FNSIGDKDIVVWNAMINGYAMHGDSRKALEMFSQLRS-----QGLWPTDITFIGLLNACS 375
Query: 337 RAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSF 396
+ L+ EG ++F+ M + Y I P HY CM +L A L EEA +++ M ++
Sbjct: 376 HSGLVDEGHQFFQSMEEEYAIVPKIEHYGCMVDLLGRAGLIEEAFHLVQSM-----TIAP 430
Query: 397 ESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRE 456
+++MWVSLL+ CR +A+ +++A V + Y L N+YA G WE+VARVR
Sbjct: 431 DTVMWVSLLAACRLHKNMALGQQIADYLVAGGLANSGMYILLSNIYAAVGNWEEVARVRS 490
Query: 457 LMKKRRMGRMPGCRLVDLKEVVEKLKVGHFWRGGMK----EEVNKMME 500
+MK + + PGC +++ KV F G M +E+ M+E
Sbjct: 491 MMKASGIQKEPGCSAIEVGR-----KVYEFVAGDMSHPRTDEIYAMLE 533
Score = 40.0 bits (92), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 29/147 (19%), Positives = 65/147 (44%), Gaps = 2/147 (1%)
Query: 35 GSPDYTVLVFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLF 94
GS + V VF I + NA+I Y+ + + + Q+ G P TF+ L
Sbjct: 312 GSLEDAVSVFNSIGDKDIVVWNAMINGYAMHGDSRKALEMFSQLRSQGLWPTDITFIGLL 371
Query: 95 GSCAKTGCVERG-GMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMS-PRD 152
+C+ +G V+ G + + + ++ ++++ G G ++ A ++ M+ D
Sbjct: 372 NACSHSGLVDEGHQFFQSMEEEYAIVPKIEHYGCMVDLLGRAGLIEEAFHLVQSMTIAPD 431
Query: 153 LISWNSIVSGHVRSGDMSAAHELFDIM 179
+ W S+++ +M+ ++ D +
Sbjct: 432 TVMWVSLLAACRLHKNMALGQQIADYL 458
>gi|115470299|ref|NP_001058748.1| Os07g0113500 [Oryza sativa Japonica Group]
gi|22831309|dbj|BAC16163.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|24414055|dbj|BAC22304.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|113610284|dbj|BAF20662.1| Os07g0113500 [Oryza sativa Japonica Group]
gi|125598898|gb|EAZ38474.1| hypothetical protein OsJ_22862 [Oryza sativa Japonica Group]
Length = 634
Score = 258 bits (659), Expect = 5e-66, Method: Compositional matrix adjust.
Identities = 148/468 (31%), Positives = 248/468 (52%), Gaps = 23/468 (4%)
Query: 38 DYTVLVFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSC 97
D TV + + +P T + I A+S+ + + +M+ G +P S+T S +C
Sbjct: 83 DLTVTLLRLTPDPTTVFYTSAIHAHSSRGLHLAALALLSEMLGRGLIPTSHTLSSSLPAC 142
Query: 98 AKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWN 157
+ G H A K + + V +L+ MY G D AR +F +M ++
Sbjct: 143 HG---LALGRALHAYAFKLALAGDSYVATALLGMYARGGDADAARALFDEMPDPHVVPVT 199
Query: 158 SIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRG 217
++++ + + G + A ELFD MP ++ + WN MI GY++ G P +L+LFR M++SG
Sbjct: 200 AMLTCYAKMGALDDARELFDGMPSKDFICWNAMIDGYTQHGRPNEALRLFRWMLRSGVDP 259
Query: 218 NDKTMASVLTACGRSARFNEGRSVHGYTVRT-SLKPNIILDTALIDLYSKCQKVEVAQRV 276
++ + L+A + GR +H Y + ++ N + TALID+Y KC +E A V
Sbjct: 260 DEVAIILALSAVAQLGTAESGRWLHSYVKNSRRVQLNARVGTALIDMYCKCGSLEDAVSV 319
Query: 277 FDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACV 336
F+S+ D+++V WNAMI G+ +HG + +++F+ L + + P +ITFIG++ AC
Sbjct: 320 FNSIGDKDIVVWNAMINGYAMHGDSRKALEMFSQLRS-----QGLWPTDITFIGLLNACS 374
Query: 337 RAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSF 396
+ L+ EG ++F+ M + Y I P HY CM +L A L EEA +++ M ++
Sbjct: 375 HSGLVDEGHQFFQSMEEEYAIVPKIEHYGCMVDLLGRAGLIEEAFHLVQSM-----TIAP 429
Query: 397 ESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRE 456
+++MWVSLL+ CR +A+ +++A V + Y L N+YA G WE+VARVR
Sbjct: 430 DTVMWVSLLAACRLHKNMALGQQIADYLVAGGLANSGMYILLSNIYAAVGNWEEVARVRS 489
Query: 457 LMKKRRMGRMPGCRLVDLKEVVEKLKVGHFWRGGMK----EEVNKMME 500
+MK + + PGC +++ KV F G M +E+ M+E
Sbjct: 490 MMKASGIQKEPGCSAIEVGR-----KVYEFVAGDMSHPRTDEIYAMLE 532
Score = 40.0 bits (92), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 29/147 (19%), Positives = 65/147 (44%), Gaps = 2/147 (1%)
Query: 35 GSPDYTVLVFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLF 94
GS + V VF I + NA+I Y+ + + + Q+ G P TF+ L
Sbjct: 311 GSLEDAVSVFNSIGDKDIVVWNAMINGYAMHGDSRKALEMFSQLRSQGLWPTDITFIGLL 370
Query: 95 GSCAKTGCVERG-GMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMS-PRD 152
+C+ +G V+ G + + + ++ ++++ G G ++ A ++ M+ D
Sbjct: 371 NACSHSGLVDEGHQFFQSMEEEYAIVPKIEHYGCMVDLLGRAGLIEEAFHLVQSMTIAPD 430
Query: 153 LISWNSIVSGHVRSGDMSAAHELFDIM 179
+ W S+++ +M+ ++ D +
Sbjct: 431 TVMWVSLLAACRLHKNMALGQQIADYL 457
>gi|225457315|ref|XP_002281558.1| PREDICTED: pentatricopeptide repeat-containing protein At2g02980
[Vitis vinifera]
gi|297733922|emb|CBI15169.3| unnamed protein product [Vitis vinifera]
Length = 615
Score = 258 bits (659), Expect = 6e-66, Method: Compositional matrix adjust.
Identities = 140/444 (31%), Positives = 236/444 (53%), Gaps = 42/444 (9%)
Query: 56 NAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALK 115
N++I+ Y++S V Y QM KNG P+S TF ++ S A+ E G H ++
Sbjct: 111 NSMIRCYTDSNKHLHSVFIYTQMWKNGIFPDSSTFPTVLKSVAQLCRQELGKAIHCCIIQ 170
Query: 116 NGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHEL 175
G + + V +L+NMYG ++ AR ++
Sbjct: 171 MGFESNVYVSTALVNMYGTCSSVSDAR-------------------------------QV 199
Query: 176 FDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARF 235
FD +P+RN+VSWN +I+GY+ + + +FREM +G + + TM VL AC
Sbjct: 200 FDEIPDRNIVSWNALITGYNHNRMFRKVIDVFREMQIAGAKPVEVTMVGVLLACAHLGAL 259
Query: 236 NEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGH 295
N+GR + Y L+ N+ + TALID+Y+KC V+ A+++F +M +N+ WN +I G+
Sbjct: 260 NQGRWIDDYIDHNRLRLNVFVGTALIDMYAKCGVVDEAEKIFKAMRVKNVYTWNVLISGY 319
Query: 296 CIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFY 355
++G+ E ++ F+ ++ PDE+TF+GV+CAC L+ EGR YF M + +
Sbjct: 320 AMNGRGESALQAFSRMIM-----EKFKPDEVTFLGVLCACCHQGLVNEGRTYFTSMKEEF 374
Query: 356 KIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVA 415
++P HY CM +L A +EA+++++ M +M + I+W LL CR G +
Sbjct: 375 GLRPRIEHYGCMVDLLGRAGFLDEAQQLIQAM-----SMQPDPIIWRELLGACRIHGNIQ 429
Query: 416 MVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLK 475
+ E K ++++P + Y L N+YA +W+ V VRE+M RR+ ++PGC +++
Sbjct: 430 LGEFAIKKLLELEPNNGENYVLLANLYARDQRWDKVGEVREMMDCRRVRKVPGCSSIEID 489
Query: 476 EVVEKLKVGHFWRGGMKEEVNKMM 499
VV + V ++ + G EEV K++
Sbjct: 490 NVVYEFVVSNYIKPGF-EEVYKLL 512
Score = 40.0 bits (92), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 37/169 (21%), Positives = 74/169 (43%), Gaps = 10/169 (5%)
Query: 20 NSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMI 79
N F L+ A G D +FK + + N +I Y+ + + + + +MI
Sbjct: 277 NVFVGTALIDMYAKCGVVDEAEKIFKAMRVKNVYTWNVLISGYAMNGRGESALQAFSRMI 336
Query: 80 KNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKN--GVDFELPVMNSLINMYGCFGA 137
F P+ TF+ + +C G V G + ++K G+ + ++++ G G
Sbjct: 337 MEKFKPDEVTFLGVLCACCHQGLVNE-GRTYFTSMKEEFGLRPRIEHYGCMVDLLGRAGF 395
Query: 138 MDCARNMFVQMSPR-DLISWNSI-----VSGHVRSGDMSAAHELFDIMP 180
+D A+ + MS + D I W + + G+++ G+ A +L ++ P
Sbjct: 396 LDEAQQLIQAMSMQPDPIIWRELLGACRIHGNIQLGEF-AIKKLLELEP 443
>gi|357444867|ref|XP_003592711.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355481759|gb|AES62962.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 550
Score = 258 bits (659), Expect = 6e-66, Method: Compositional matrix adjust.
Identities = 154/481 (32%), Positives = 257/481 (53%), Gaps = 16/481 (3%)
Query: 1 MKQLLQIQAHLITSGLFFNNSFWTINLLKHSA--DFGSPDYTVLVFKCINNPGTFCVNAV 58
M +L ++ A I+ GL SF +L SA + G DY+ VF I++P F N +
Sbjct: 27 MLELKKLHAIGISYGLSHEYSF-IFKILSFSALSNSGDIDYSYRVFSQISSPTIFSWNII 85
Query: 59 IKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGV 118
I+ YSNS P + +L+M+++G P+ T+ L + A+ + G H +K G
Sbjct: 86 IRGYSNSKNPIHSLSIFLKMLRHGVAPDYLTYPFLVKASARLSKQKSGVSVHAQIIKTGH 145
Query: 119 DFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDI 178
+ + + NSLI+MY G + A +F M ++L+SWNS++ G+ + G+M+ A ++F+
Sbjct: 146 ESDRFIQNSLIHMYASCGNIMWAHKVFESMQGKNLVSWNSMLDGYAKCGEMAMAQKVFES 205
Query: 179 MPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEG 238
M ER+V SW+ I GY K+G ++ +F +M G + N+ TM SVL+AC +G
Sbjct: 206 MQERDVRSWSSFIDGYVKAGEYREAMAVFEKMRAVGPKANEVTMVSVLSACAHLGALQKG 265
Query: 239 RSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFD--SMADRNLVCWNAMILGHC 296
R +H Y + L ++L T+L+D+Y+KC +E A VF S + ++ WNAMI G
Sbjct: 266 RMMHQYIIDNLLPMTMVLQTSLVDMYAKCGAIEEALFVFRGISKSQTDVFIWNAMIGGLA 325
Query: 297 IHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYK 356
HG EE +KLF + +AG I DEIT++ ++ AC L+ E +F ++
Sbjct: 326 THGLVEESLKLFKEM---QMAG--IRSDEITYLCLLAACAHGGLVKEAWNFFESLVK-RG 379
Query: 357 IKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAM 416
+ P HY CM ++ A A A + + ++P + + M ++ S C +
Sbjct: 380 MTPTSEHYACMVDVLARAGQLTTAYQFICQIP-----IEPTASMLGAIFSGCINHRNFDL 434
Query: 417 VERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLKE 476
E + + +++DP + RY L NVYAV +W+D +RE M++R + + PG V++ E
Sbjct: 435 AETVGRKLIELDPNNDGRYIGLSNVYAVVKRWDDSKSMREAMERRGVKKSPGFSFVEISE 494
Query: 477 V 477
+
Sbjct: 495 I 495
>gi|225452893|ref|XP_002278719.1| PREDICTED: pentatricopeptide repeat-containing protein At5g15340,
mitochondrial-like [Vitis vinifera]
Length = 632
Score = 258 bits (658), Expect = 6e-66, Method: Compositional matrix adjust.
Identities = 157/484 (32%), Positives = 250/484 (51%), Gaps = 16/484 (3%)
Query: 6 QIQAHLITSGLF-FNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVN--AVIKAY 62
++ A +IT+G+ +F LL+ A G VF I + V+ ++ +
Sbjct: 34 RLHATIITTGIAGAPETFLHNALLQFYASCGCAWQARKVFDEIPHSHKDTVDWTTLMGCF 93
Query: 63 SNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFEL 122
V D+ ++ +++M + G P+ T V LFG CA+ G V G HG +K G+
Sbjct: 94 VRHNVSDEALLIFVEMRRCGVKPDEVTLVCLFGGCARLGDVVVGAQGHGCMVKMGLGGVE 153
Query: 123 PVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPER 182
N++++MY G M AR +F +M + ++SW I+ G +RS + +FD MPER
Sbjct: 154 KACNAVMDMYAKSGLMGEARRVFYEMKGQSVVSWTVILDGVIRSEGVRNGRVVFDEMPER 213
Query: 183 NVVSWNIMISGYSKSGNPGCSLKLFREMM-KSGFRGNDKTMASVLTACGRSARFNEGRSV 241
N V+W IMI+GY SG S L REM+ N T+ S+LTAC +S GR V
Sbjct: 214 NEVAWTIMIAGYLDSGLTQESFALVREMIFDLEMELNYVTLCSILTACSQSGDLMMGRWV 273
Query: 242 HGYTVRTSLKP-NIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGK 300
H Y ++T K NI++ TA++D+Y+KC ++ +A + F M RN+V WNAM+ G +HG
Sbjct: 274 HAYALKTKEKELNIMVGTAMVDMYAKCGRIHIAFKFFKKMPQRNVVSWNAMLSGLAMHGL 333
Query: 301 PEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPN 360
+ +F + PD++TF V+ AC + L+ +G YF + Y I P
Sbjct: 334 GRAALDIFPQMFK------EAKPDDVTFTSVLSACSHSGLVDQGCFYFGNLESVYGITPK 387
Query: 361 FAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERL 420
HY CM +L A EEAE ++R+MP + ++ SLL C G + + E L
Sbjct: 388 VEHYACMVDLLGRAGRLEEAEILVREMP-----IRPNEVVLGSLLGSCSIHGKLQLGEHL 442
Query: 421 AKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLKEVVEK 480
+ V +DPQ+ + L N+YA+AG+ +R+++KKR + ++PG + + V +
Sbjct: 443 LQELVQLDPQNTEYHILLSNMYALAGKQNRANSLRQVLKKRGIKKVPGMSSIHVGGQVHQ 502
Query: 481 LKVG 484
G
Sbjct: 503 FSAG 506
>gi|225440783|ref|XP_002275884.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g37570 [Vitis vinifera]
Length = 561
Score = 258 bits (658), Expect = 6e-66, Method: Compositional matrix adjust.
Identities = 157/534 (29%), Positives = 267/534 (50%), Gaps = 78/534 (14%)
Query: 4 LLQIQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAYS 63
L Q+ A +I GL + F L + YT VF +++P T N IK YS
Sbjct: 41 LEQVHARIIRKGLH-QDHFIISQFLTLCNSLSNFSYTTSVFNGVSSPSTVLWNTYIKGYS 99
Query: 64 NSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELP 123
+ V +++M ++ +P+ +T+ SL +C+K V+ G HG A++ GV ++
Sbjct: 100 ENYSVSLTVSLFIRMKRSDAVPDKFTYPSLIKACSKVCGVKEGVAFHGSAVRCGVGGDVF 159
Query: 124 VMNSLINMYGCFGAMDCARNMFVQMSPRDLISW--------------------------- 156
VM SLI++YG G + CAR +F +M R+++SW
Sbjct: 160 VMTSLIDLYGKCGEILCARKVFDEMGERNVVSWTAMIAGYASFSDLVEARKLFDEMPEKN 219
Query: 157 ----NSIVSGHVRSGDMSAAHELFDIMPERNVVS-------------------------- 186
N+I+SG+V+ GD+ +A ++FD MP RNVVS
Sbjct: 220 AVSWNAIISGYVKCGDLRSARKMFDEMPHRNVVSFTTMIDGYAKSGDMASARFVFEEAPE 279
Query: 187 -----WNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSV 241
W+ +ISGY ++G P ++K+F EM + ++ M S+++AC + + V
Sbjct: 280 RDVVAWSALISGYVQNGQPNEAVKIFLEMCSRNVKPDEFIMVSLMSACSQMGSLELAKWV 339
Query: 242 HGYTVRTSL---KPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIH 298
Y ++S+ + ++I ALID+ +KC ++ A ++F+ M R+L+ + +M+ G IH
Sbjct: 340 DDYVRKSSIDVHRAHVI--AALIDMNAKCGSMDRATKLFEEMPKRDLISYCSMMQGLSIH 397
Query: 299 GKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIK 358
G + + LF+ ++N ++PD++ F ++ AC RA L+ EG YF M Y I
Sbjct: 398 GCGPQAVSLFSRMLN-----EGLTPDDVAFTVILTACSRAGLVDEGCYYFESMKTDYSIV 452
Query: 359 PNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVE 418
P+ HY CM +L A +EA E+L+ MP + + W +LL C+ + + E
Sbjct: 453 PSPDHYACMVDLLGRAGRLKEAYELLKSMPVEP-----HAGAWGALLGACKLHCDIELGE 507
Query: 419 RLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLV 472
+A +++PQ+ Y L N+YA A QW DV+ +R M++R + ++PGC +
Sbjct: 508 VVADQLFELEPQNAGNYVLLSNIYAAAEQWLDVSLLRNKMRERGIRKIPGCSWI 561
>gi|449439631|ref|XP_004137589.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Cucumis sativus]
Length = 555
Score = 258 bits (658), Expect = 7e-66, Method: Compositional matrix adjust.
Identities = 152/495 (30%), Positives = 251/495 (50%), Gaps = 20/495 (4%)
Query: 2 KQLLQIQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKA 61
+ L + A ++ SG F ++ +LL FGS VF+ I P T N +IK
Sbjct: 41 RNLAKTHAQIVVSG-FSQKNYILNHLLSLYISFGSLGSAQKVFEDITAPSTTVWNQIIKG 99
Query: 62 YSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFE 121
++ S + + + +M G N +T+ L +C ++ G HG L NG
Sbjct: 100 HTRSKTSKKSIELFKRMTLAGVEANGFTYSFLLSACVRSRLFREGEQIHGRVLVNGYWSN 159
Query: 122 LPVMNSLINMY---GCFGAMDCARNMFV--QMSPRDLISWNSIVSGHVRSGDMSAAHELF 176
L V +LIN+Y G G D R +++ +M +++ WNS+++G+VR GD A ++F
Sbjct: 160 LYVRTNLINLYANGGDGGDFDLKRALYLFDEMPDSNVVGWNSLLAGYVRRGDFDGARKVF 219
Query: 177 DIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFN 236
D MPERNV +W IM++G++++G +L LF +M ++G + + + L+AC
Sbjct: 220 DEMPERNVRTWTIMVAGFAQNGQCKLALSLFDQMRRAGVELDQVALVAALSACAELGDLT 279
Query: 237 EGRSVHGYTVRT----SLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMI 292
G+ +HGY RT L + L+ ALI +Y+ C +++A ++F+ + RN V W+++I
Sbjct: 280 LGKWIHGYVERTWRSRHLPVLVSLNNALIHMYASCGAMDLAYKLFEEIPQRNTVSWSSII 339
Query: 293 LGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMI 352
G G E I++F ++ + PDEITFIG + AC A L+++G + F+ M
Sbjct: 340 TGFAKQGCGVEAIRIFQLML--CSGQNEVRPDEITFIGALTACSHAGLISDGIRLFQSMH 397
Query: 353 DFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQG 412
+ + P HY CM +L + A L EA ++ MP +N +W +LLS CR
Sbjct: 398 KTFGVIPQIEHYGCMVDLLSRAGLLTEALSLIESMPMKPNNA-----VWGALLSGCRLHK 452
Query: 413 AVAMVERLAKSF---VDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGC 469
+V +AK +D + Q + L NVYA G+W+D A VR M + + G
Sbjct: 453 NDEIVSHVAKHLSFEIDPNNQAAGYFMLLANVYAADGRWQDTATVRRNMHDIGVKKPSGR 512
Query: 470 RLVDLKEVVEKLKVG 484
+++ V+ VG
Sbjct: 513 SWIEINGVLCSFMVG 527
>gi|359484341|ref|XP_002280538.2| PREDICTED: pentatricopeptide repeat-containing protein
At4g02750-like [Vitis vinifera]
gi|297738773|emb|CBI28018.3| unnamed protein product [Vitis vinifera]
Length = 695
Score = 258 bits (658), Expect = 8e-66, Method: Compositional matrix adjust.
Identities = 150/498 (30%), Positives = 262/498 (52%), Gaps = 52/498 (10%)
Query: 43 VFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGC 102
VF ++ N VI +S + Q + F+++M + GF YT VS+ +C++
Sbjct: 111 VFDQMSVHDAVSYNTVIAGFSGNGCSSQALEFFVRMQEEGFESTDYTHVSVLHACSQLLD 170
Query: 103 VERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSG 162
++RG HG + + + V N+L NMY GA+D AR +F +M ++++SWNS++SG
Sbjct: 171 IKRGKQIHGRIVATSLGESVFVWNALTNMYAKCGALDQARWLFDRMVNKNVVSWNSMISG 230
Query: 163 HVRSGDMSAAHELF------DIMP-----------------------------ERNVVSW 187
++++G +LF +MP E++ V W
Sbjct: 231 YLQNGQPETCTKLFCEMQSSGLMPDQVTISNILSAYFQCGYIDEACKTFREIKEKDKVCW 290
Query: 188 NIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVR 247
M+ G +++G +L LFREM+ R ++ T++SV+++C R A +G++VHG V
Sbjct: 291 TTMMVGCAQNGKEEDALLLFREMLLENVRPDNFTISSVVSSCARLASLCQGQAVHGKAVI 350
Query: 248 TSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKL 307
+ ++++ +AL+D+YSKC + A VF M RN++ WN+MILG+ +GK E + L
Sbjct: 351 FGVDHDLLVSSALVDMYSKCGETADAWIVFKRMLTRNVISWNSMILGYAQNGKDLEALAL 410
Query: 308 FTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCM 367
+ +++ ++ PD ITF+GV+ AC+ A L+ G+ YF + + + P F HY CM
Sbjct: 411 YEEMLH-----ENLKPDNITFVGVLSACMHAGLVERGQGYFYSISKIHGMNPTFDHYSCM 465
Query: 368 ANLYAGAELTEEAEEILRKMPEDNDNMSFES--IMWVSLLSLCRFQGAVAMVERLAKSFV 425
NL A ++A ++++ +M+FE ++W +LLS+CR V E A+
Sbjct: 466 INLLGRAGYMDKAVDLIK-------SMTFEPNCLIWSTLLSVCRINCDVNNGEMAARHLF 518
Query: 426 DMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLKEVVEKLKV-- 483
++DP + Y L N+YA G+W+DVA VR LMK ++ + +++ V K
Sbjct: 519 ELDPHNAGPYIMLSNIYAACGRWKDVAAVRSLMKNNKIKKFAAYSWIEIDNQVHKFVAED 578
Query: 484 -GHFWRGGMKEEVNKMME 500
H + EE+N++++
Sbjct: 579 RTHSETEQIYEELNRLIK 596
Score = 157 bits (398), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 99/322 (30%), Positives = 168/322 (52%), Gaps = 21/322 (6%)
Query: 102 CVERGGMCHGLALKNGVDFELP------VMNSLINMYGCFGAMDCARNMFVQMSPRDLIS 155
CV + L+ +D L + N L+++Y G + AR++F +MS RD+ S
Sbjct: 32 CVRSNDVVQAKRLQTHMDLHLYQPTDTFLQNRLLHLYAKSGNLSDARDLFDKMSRRDVFS 91
Query: 156 WNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGF 215
WN+++S + +SG++ +FD M + VS+N +I+G+S +G +L+ F M + GF
Sbjct: 92 WNAMLSAYSKSGNVEDLRAVFDQMSVHDAVSYNTVIAGFSGNGCSSQALEFFVRMQEEGF 151
Query: 216 RGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQR 275
D T SVL AC + G+ +HG V TSL ++ + AL ++Y+KC ++ A+
Sbjct: 152 ESTDYTHVSVLHACSQLLDIKRGKQIHGRIVATSLGESVFVWNALTNMYAKCGALDQARW 211
Query: 276 VFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICAC 335
+FD M ++N+V WN+MI G+ +G+PE KLF + + PD++T ++ A
Sbjct: 212 LFDRMVNKNVVSWNSMISGYLQNGQPETCTKLFCEM-----QSSGLMPDQVTISNILSAY 266
Query: 336 VRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDN---D 392
+ + E K FR++ + K+ C N G E E+A + R+M +N D
Sbjct: 267 FQCGYIDEACKTFREIKEKDKVCWTTMMVGCAQN---GKE--EDALLLFREMLLENVRPD 321
Query: 393 NMSFESIM--WVSLLSLCRFQG 412
N + S++ L SLC+ Q
Sbjct: 322 NFTISSVVSSCARLASLCQGQA 343
Score = 74.3 bits (181), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 60/272 (22%), Positives = 116/272 (42%), Gaps = 39/272 (14%)
Query: 26 NLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMP 85
N+L G D F+ I C ++ + + + ++ + +M+ P
Sbjct: 261 NILSAYFQCGYIDEACKTFREIKEKDKVCWTTMMVGCAQNGKEEDALLLFREMLLENVRP 320
Query: 86 NSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMF 145
+++T S+ SCA+ + +G HG A+ GVD +L V ++L++MY G A +F
Sbjct: 321 DNFTISSVVSSCARLASLCQGQAVHGKAVIFGVDHDLLVSSALVDMYSKCGETADAWIVF 380
Query: 146 VQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLK 205
+M R++ISWNS++ G Y+++G +L
Sbjct: 381 KRMLTRNVISWNSMILG-------------------------------YAQNGKDLEALA 409
Query: 206 LFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTS----LKPNIILDTALI 261
L+ EM+ + ++ T VL+AC + G+ GY S + P + +I
Sbjct: 410 LYEEMLHENLKPDNITFVGVLSACMHAGLVERGQ---GYFYSISKIHGMNPTFDHYSCMI 466
Query: 262 DLYSKCQKVEVAQRVFDSMA-DRNLVCWNAMI 292
+L + ++ A + SM + N + W+ ++
Sbjct: 467 NLLGRAGYMDKAVDLIKSMTFEPNCLIWSTLL 498
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 41/148 (27%), Positives = 76/148 (51%), Gaps = 10/148 (6%)
Query: 42 LVFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTG 101
+VFK + N++I Y+ + + + Y +M+ P++ TFV + +C G
Sbjct: 378 IVFKRMLTRNVISWNSMILGYAQNGKDLEALALYEEMLHENLKPDNITFVGVLSACMHAG 437
Query: 102 CVERG-GMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMS--PRDLISWNS 158
VERG G + ++ +G++ + +IN+ G G MD A ++ M+ P LI W++
Sbjct: 438 LVERGQGYFYSISKIHGMNPTFDHYSCMINLLGRAGYMDKAVDLIKSMTFEPNCLI-WST 496
Query: 159 IVS-----GHVRSGDMSAAHELFDIMPE 181
++S V +G+M+A H LF++ P
Sbjct: 497 LLSVCRINCDVNNGEMAARH-LFELDPH 523
>gi|7362769|emb|CAB83139.1| putative protein [Arabidopsis thaliana]
Length = 558
Score = 257 bits (657), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 149/442 (33%), Positives = 246/442 (55%), Gaps = 29/442 (6%)
Query: 52 TFCVNAVIKAYSNSCVPDQ---GVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGM 108
+F N +I+A ++ Q + YL+M + P+ +TF L S + G
Sbjct: 24 SFLWNIIIRAIVHNVSSPQRHSPISVYLRMRNHRVSPDFHTFPFLLPSFHNPLHLPLGQR 83
Query: 109 CHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGD 168
H L G+D + V SL+NMY G + A+ +F +DL +WNS+V+ + ++G
Sbjct: 84 THAQILLFGLDKDPFVRTSLLNMYSSCGDLRSAQRVFDDSGSKDLPAWNSVVNAYAKAGL 143
Query: 169 MSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMM-----KSGFRGNDKTMA 223
+ A +LFD MPERNV+SW+ +I+GY G +L LFREM ++ R N+ TM+
Sbjct: 144 IDDARKLFDEMPERNVISWSCLINGYVMCGKYKEALDLFREMQLPKPNEAFVRPNEFTMS 203
Query: 224 SVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSM-AD 282
+VL+ACGR +G+ VH Y + ++ +I+L TALID+Y+KC +E A+RVF+++ +
Sbjct: 204 TVLSACGRLGALEQGKWVHAYIDKYHVEIDIVLGTALIDMYAKCGSLERAKRVFNALGSK 263
Query: 283 RNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLT 342
+++ ++AMI ++G +E +LF+ + +I+P+ +TF+G++ ACV L+
Sbjct: 264 KDVKAYSAMICCLAMYGLTDECFQLFSEMTTSD----NINPNSVTFVGILGACVHRGLIN 319
Query: 343 EGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWV 402
EG+ YF+ MI+ + I P+ HY CM +LY + L +EAE + MP + D ++W
Sbjct: 320 EGKSYFKMMIEEFGITPSIQHYGCMVDLYGRSGLIKEAESFIASMPMEPD-----VLIWG 374
Query: 403 SLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRR 462
SLLS R G + E K +++DP + Y L NVYA G+W +
Sbjct: 375 SLLSGSRMLGDIKTCEGALKRLIELDPMNSGAYVLLSNVYAKTGRWME-----------G 423
Query: 463 MGRMPGCRLVDLKEVVEKLKVG 484
+ ++PGC V+++ VV + VG
Sbjct: 424 INKVPGCSYVEVEGVVHEFVVG 445
>gi|224073108|ref|XP_002303975.1| predicted protein [Populus trichocarpa]
gi|222841407|gb|EEE78954.1| predicted protein [Populus trichocarpa]
Length = 508
Score = 257 bits (656), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 147/491 (29%), Positives = 252/491 (51%), Gaps = 28/491 (5%)
Query: 32 ADFGSPDYTVLVFKCINN-PGTFCVNAVIKAYSNSCV-PDQGVVFYLQMIKNGFMPNSYT 89
+ G Y +F I + P + N +IKA S+S P + Y + G P+SY+
Sbjct: 21 SSLGFYSYAYSLFTSITHAPDIYLYNNIIKALSSSPTHPKASIFLYNNIQLAGLRPDSYS 80
Query: 90 FVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDC---ARNMF- 145
F + + ++ G H +++ G+ +L V+ + + MY FG+ C AR MF
Sbjct: 81 FPFALKAVTRFSSIQTGRQLHSQSIRFGLHSDLHVLTAFVQMYSSFGS-GCICDARKMFD 139
Query: 146 -VQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSL 204
+ MS D+ WN++++G+ + GD+ A +LF+ MP+RNV+SW +I+GY+++ P ++
Sbjct: 140 GMSMSTGDVALWNAMLNGYAKHGDLCNARDLFERMPQRNVISWTALITGYAQANRPHDAI 199
Query: 205 KLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTS-LKPNIILDTALIDL 263
LFR M ++ M LTAC R G + Y R L NI L+ ALID+
Sbjct: 200 ALFRRMQLENVEPDEIAMLVALTACARLGALELGEWIRHYIDRLGLLTTNIPLNNALIDM 259
Query: 264 YSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISP 323
Y+K ++ A +VF++M + ++ W MI G +HG E +++F+ + V P
Sbjct: 260 YAKSGDIKSALQVFENMNHKTIITWTTMIAGLALHGLGTEALEMFSRMERARV-----KP 314
Query: 324 DEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEI 383
++ITFI ++ AC L+ GR YF +MI Y I+P HY CM +L A +EA+ +
Sbjct: 315 NDITFIAILSACSHVGLVQTGRWYFNRMISRYGIEPKIEHYGCMIDLLGRAGHLKEAQTL 374
Query: 384 LRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYA 443
L +MP + + +++W SLL+ C G + E + ++++P + Y L N+YA
Sbjct: 375 LAQMPFEPN-----AVIWGSLLAACNTHGDPELGELALQHLLELEPDNSGNYALLSNIYA 429
Query: 444 VAGQWEDVARVRELMKKRRMGRMPGCRLVDLKEVVEKLKVGHFWRGGMKEEVNKMMECRQ 503
G+W + VR++M + +MPG L+++ V + G E++ R
Sbjct: 430 SRGRWNESRVVRKVMWDAGVKKMPGGSLIEVNNRVHEFIAG---------EISHSQFDRI 480
Query: 504 SRSLATVSKQL 514
L+ +++QL
Sbjct: 481 QEVLSKINRQL 491
Score = 42.7 bits (99), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 40/195 (20%), Positives = 90/195 (46%), Gaps = 14/195 (7%)
Query: 11 LITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSNSCVPDQ 70
L+T+ + NN+ I++ S D S + VF+ +N+ +I + + +
Sbjct: 245 LLTTNIPLNNAL--IDMYAKSGDIKS---ALQVFENMNHKTIITWTTMIAGLALHGLGTE 299
Query: 71 GVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGG-MCHGLALKNGVDFELPVMNSLI 129
+ + +M + PN TF+++ +C+ G V+ G + + + G++ ++ +I
Sbjct: 300 ALEMFSRMERARVKPNDITFIAILSACSHVGLVQTGRWYFNRMISRYGIEPKIEHYGCMI 359
Query: 130 NMYGCFGAMDCARNMFVQM--SPRDLISWNSIVSGHVRSGDMS----AAHELFDIMPERN 183
++ G G + A+ + QM P +I W S+++ GD A L ++ P+ N
Sbjct: 360 DLLGRAGHLKEAQTLLAQMPFEPNAVI-WGSLLAACNTHGDPELGELALQHLLELEPD-N 417
Query: 184 VVSWNIMISGYSKSG 198
++ ++ + Y+ G
Sbjct: 418 SGNYALLSNIYASRG 432
>gi|225452869|ref|XP_002283796.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g15300-like [Vitis vinifera]
Length = 550
Score = 257 bits (656), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 157/507 (30%), Positives = 249/507 (49%), Gaps = 51/507 (10%)
Query: 4 LLQIQAHLITSGLFFNNSFWTINLLKHSADF---GSPDYTVLVFKCINNPGTFCVNAVIK 60
L QI A +I G FN++ + L +++ G+ Y +F I P TF N +I+
Sbjct: 29 LKQIHASMIVKG--FNSNTSALRELIYASSIAISGTMAYAHQLFPHITEPDTFMWNTMIR 86
Query: 61 AYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDF 120
+ S P + Y QM P+ +TF + +C + V+ G HG + G +
Sbjct: 87 GSAQSPSPLNAISLYSQMENGCVRPDKFTFPFVLKACTRLCWVKMGFGVHGRVFRLGFES 146
Query: 121 ELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMP 180
V N+LI + G + AR +F + RD+++W+++ +G+ R G++ A +LFD MP
Sbjct: 147 NTFVRNTLIYFHANCGDLAVARALFDGSAKRDVVAWSALTAGYARRGELGVARQLFDEMP 206
Query: 181 ERNVVSWNIMISGYSKSGNPGC-------------------------------SLKLFRE 209
+++VSWN+MI+GY+K G +L++F E
Sbjct: 207 VKDLVSWNVMITGYAKRGEMESARKLFDEVPKRDVVTWNAMIAGYVLCGSNQQALEMFEE 266
Query: 210 MMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKP-NIILDTALIDLYSKCQ 268
M G ++ TM S+L+AC + G+ +H + +++L ALID+Y+KC
Sbjct: 267 MRSVGELPDEVTMLSLLSACTDLGDLDAGQRIHCCISEMGFRDLSVLLGNALIDMYAKCG 326
Query: 269 KVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITF 328
+ A VF M ++++ WN+++ G HG E+ I LFT + I PDEITF
Sbjct: 327 SIVRALEVFQGMREKDVSTWNSVLGGLAFHGHAEKSIHLFTEMRK-----LKIRPDEITF 381
Query: 329 IGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMP 388
+GV+ AC A + EGR+YF M D Y I+PN HY CM +L A L EA + +
Sbjct: 382 VGVLVACSHAGRVEEGRQYFDLMRDEYNIEPNIRHYGCMVDLLGRAGLLNEAFDFI---- 437
Query: 389 EDNDNMSFE--SIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAG 446
D M E +I+W +LL CR G V + R + M + Y L N+YA G
Sbjct: 438 ---DTMKIEPNAIVWRTLLGACRIHGNVELGRRANMQLLKMRHDESGDYVLLSNIYASRG 494
Query: 447 QWEDVARVRELMKKRRMGRMPGCRLVD 473
+W+ V +VR+LM + + GC L++
Sbjct: 495 EWDGVEKVRKLMDDSGVRKEAGCSLIE 521
>gi|147818273|emb|CAN64718.1| hypothetical protein VITISV_026719 [Vitis vinifera]
Length = 499
Score = 257 bits (656), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 147/487 (30%), Positives = 266/487 (54%), Gaps = 15/487 (3%)
Query: 1 MKQLLQIQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIK 60
M++ ++ AHLITSGL + + +++ S + L+F + +P T+ N + +
Sbjct: 1 MQEAKRLHAHLITSGLHQQENHLRKLITLYTSSSSSLHHARLLFDAVYHPSTYLYNTMFR 60
Query: 61 AYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDF 120
Y+ S P ++ + M ++G P++YTF L +C+ + +G H ALK G+
Sbjct: 61 VYAASPTPLHALLLHRHMFRHGPPPDTYTFPFLLKACSALAHLLKGQELHCQALKFGLGG 120
Query: 121 ELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMP 180
+ V NSLI++YG MD AR +F M RD+ SW ++++ + S + AA ++FD MP
Sbjct: 121 HVFVENSLIHLYGSNSRMDSARRVFDGMGYRDIASWTTLLACYANSCSVEAARKVFDEMP 180
Query: 181 ERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRS 240
ER+VVS++ M++ Y + +L+LFRE+ +D + SVL AC + GR
Sbjct: 181 ERSVVSYSAMLAAYVRGNRFREALELFRELFSVKIEPSDSCVMSVLCACANLGALDVGRW 240
Query: 241 VHGYTVRTSLKPNII---LDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCI 297
V+ + + K + + + TALID++ KC +E A VF+ ++++ W AM+ G +
Sbjct: 241 VYSFVCHS--KGDYVDSRIATALIDMFFKCGSIEHALLVFEGAKEKHVGEWTAMLSGLAM 298
Query: 298 HGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKI 357
HG E+ I+ F +V+ I PDE+TF+ ++ C + L+ EG YF +M + +
Sbjct: 299 HGLGEQLIEAFEKMVD-----SGIKPDEVTFVALLSGCSHSGLVNEGLYYFDRMESDFGV 353
Query: 358 KPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMV 417
+P H+ C+ +L A L ++A +++ +MP + + + +W +LL+ CR V +
Sbjct: 354 EPTVEHFGCVVDLLGRAGLIDQAMQLISEMPFEPN-----AAIWGALLNACRVYKNVEVG 408
Query: 418 ERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLKEV 477
E A+ + +P + + Y LL++Y AG+W++V +V+ MK+ + PGC L+++ +
Sbjct: 409 ELAAQWLIKDEPWNGALYMTLLSLYREAGRWDEVEKVKLKMKEVGCRKGPGCSLIEVGGI 468
Query: 478 VEKLKVG 484
+ VG
Sbjct: 469 CYEFVVG 475
>gi|297849104|ref|XP_002892433.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297338275|gb|EFH68692.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 741
Score = 256 bits (655), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 142/453 (31%), Positives = 238/453 (52%), Gaps = 49/453 (10%)
Query: 56 NAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALK 115
NA+I Y+ + + + + +M+K P+ T V++ +CA++G +E G H
Sbjct: 235 NAMISGYAETGNYKEALELFKEMMKTNIRPDESTMVTVVSACAQSGSIELGRQVHSWIDD 294
Query: 116 NGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHEL 175
+G L ++NSL+++Y + G++ A L
Sbjct: 295 HGFGSNLKIVNSLMDLYS-------------------------------KCGELETACGL 323
Query: 176 FDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARF 235
F+ + ++V+SWN +I GY+ +L LF+EM++SG R ND TM S+L AC
Sbjct: 324 FEGLLYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGERPNDVTMLSILPACAHLGAI 383
Query: 236 NEGRSVHGYTVR--TSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMIL 293
+ GR +H Y + S L T+LID+Y+KC +E A +VF+S+ ++L WNAMI
Sbjct: 384 DIGRWIHVYIDKRLKSATNASSLRTSLIDMYAKCGDIEAAHQVFNSILHKSLSSWNAMIF 443
Query: 294 GHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMID 353
G +HG+ + +F+ + I PD+ITF+G++ AC R+ +L GR FR M
Sbjct: 444 GFAMHGRADAAFDIFSRMRKI-----GIEPDDITFVGLLSACSRSGMLDLGRHIFRTMTQ 498
Query: 354 FYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGA 413
YKI P HY CM +L + L +EAEE++ M M + ++W SLL C+ +G
Sbjct: 499 DYKITPKLEHYGCMIDLLGHSGLFKEAEEMINNM-----EMEPDGVIWCSLLKACKIRGN 553
Query: 414 VAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVD 473
V + E A++ + ++P++ Y L N+YA AG+W +VA++R L+ + M ++PGC ++
Sbjct: 554 VELGESFAQNLIKIEPENPGCYVLLSNIYATAGRWNEVAKIRALLNDKGMKKVPGCSSIE 613
Query: 474 LKEVVEKLKVGHFWRG------GMKEEVNKMME 500
+ VV + +G + GM EE+ ++E
Sbjct: 614 IDSVVHEFIIGDKFHPRNREIYGMLEEMEVLLE 646
Score = 208 bits (530), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 114/347 (32%), Positives = 191/347 (55%), Gaps = 7/347 (2%)
Query: 1 MKQLLQIQAHLITSGLFFNNSFWT--INLLKHSADFGSPDYTVLVFKCINNPGTFCVNAV 58
++ L I A +I +GL N + + L S F Y + VF+ I P N +
Sbjct: 46 LQSLRLIHAQMIKTGLHNTNYALSKLLELCVISPHFDGLPYAISVFETIQEPNLLIWNTM 105
Query: 59 IKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGV 118
+ ++ S P + Y+ MI G +PNSYTF L SCAK+ + G HG LK G
Sbjct: 106 FRGHALSSDPVSALKLYVCMISLGLLPNSYTFPFLLKSCAKSKAFKEGQQIHGHVLKLGY 165
Query: 119 DFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDI 178
D +L V SLI++Y G ++ AR +F + RD++S+ +++ G+ G + +A +LFD
Sbjct: 166 DLDLFVHTSLISVYVQNGRLEDARKVFDRSPHRDVVSYTALIKGYASRGYIESAQKLFDE 225
Query: 179 MPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEG 238
+P ++VVSWN MISGY+++GN +L+LF+EMMK+ R ++ TM +V++AC +S G
Sbjct: 226 IPVKDVVSWNAMISGYAETGNYKEALELFKEMMKTNIRPDESTMVTVVSACAQSGSIELG 285
Query: 239 RSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIH 298
R VH + N+ + +L+DLYSKC ++E A +F+ + ++++ WN +I G+
Sbjct: 286 RQVHSWIDDHGFGSNLKIVNSLMDLYSKCGELETACGLFEGLLYKDVISWNTLIGGYTHM 345
Query: 299 GKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGR 345
+E + LF ++ P+++T + ++ AC + GR
Sbjct: 346 NLYKEALLLFQEMLR-----SGERPNDVTMLSILPACAHLGAIDIGR 387
Score = 99.4 bits (246), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 62/227 (27%), Positives = 110/227 (48%), Gaps = 27/227 (11%)
Query: 172 AHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGR 231
A +F+ + E N++ WN M G++ S +P +LKL+ M+ G N T +L +C +
Sbjct: 87 AISVFETIQEPNLLIWNTMFRGHALSSDPVSALKLYVCMISLGLLPNSYTFPFLLKSCAK 146
Query: 232 SARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAM 291
S F EG+ +HG+ ++ ++ + T+LI +Y + ++E A++VFD R++V + A+
Sbjct: 147 SKAFKEGQQIHGHVLKLGYDLDLFVHTSLISVYVQNGRLEDARKVFDRSPHRDVVSYTAL 206
Query: 292 ILGHCIHGKPEEGIKLF-----------TALVNGTVAGGS---------------ISPDE 325
I G+ G E KLF A+++G G+ I PDE
Sbjct: 207 IKGYASRGYIESAQKLFDEIPVKDVVSWNAMISGYAETGNYKEALELFKEMMKTNIRPDE 266
Query: 326 ITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYA 372
T + V+ AC ++ + GR+ ID + N + +LY+
Sbjct: 267 STMVTVVSACAQSGSIELGRQ-VHSWIDDHGFGSNLKIVNSLMDLYS 312
Score = 40.4 bits (93), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 55/224 (24%), Positives = 88/224 (39%), Gaps = 36/224 (16%)
Query: 19 NNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQM 78
N S +L+ A G + VF I + NA+I ++ D + +M
Sbjct: 402 NASSLRTSLIDMYAKCGDIEAAHQVFNSILHKSLSSWNAMIFGFAMHGRADAAFDIFSRM 461
Query: 79 IKNGFMPNSYTFVSLFGSCAKTGCVERG-GMCHGLALKNGVDFELPVMNSLINMYGCFGA 137
K G P+ TFV L +C+++G ++ G + + + +L +I++ G G
Sbjct: 462 RKIGIEPDDITFVGLLSACSRSGMLDLGRHIFRTMTQDYKITPKLEHYGCMIDLLGHSGL 521
Query: 138 MDCARNMF--VQMSPRDLISWNSI-----VSGHVRSGDMSAAHELFDIMPERNVVSWNIM 190
A M ++M P D + W S+ + G+V G+ S A L I PE
Sbjct: 522 FKEAEEMINNMEMEP-DGVIWCSLLKACKIRGNVELGE-SFAQNLIKIEPE--------- 570
Query: 191 ISGYSKSGNPGCSLKL---------FREMMKSGFRGNDKTMASV 225
NPGC + L + E+ K NDK M V
Sbjct: 571 --------NPGCYVLLSNIYATAGRWNEVAKIRALLNDKGMKKV 606
>gi|225450551|ref|XP_002277430.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Vitis vinifera]
Length = 500
Score = 256 bits (655), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 151/488 (30%), Positives = 267/488 (54%), Gaps = 16/488 (3%)
Query: 1 MKQLLQIQAHLITSGLFFN-NSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVI 59
M++ ++ AHLITSGL N + L S+ S + L+F I++P T+ N +
Sbjct: 1 MQEAKRLHAHLITSGLHQQENHLRKLITLYTSSSSSSLHHARLLFDAIHHPSTYLYNTMF 60
Query: 60 KAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVD 119
+ Y+ S P ++ + M+++G P++YTF L +C+ + +G H ALK G+
Sbjct: 61 RVYAASPTPLHALLLHRHMLRHGPPPDTYTFPFLLKACSALAHLPKGQELHCQALKFGLG 120
Query: 120 FELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIM 179
+ V NSLI++YG MD AR +F M RD+ SW ++++ + S + AA ++FD M
Sbjct: 121 GHVFVENSLIHLYGSNSGMDSARRVFDGMGYRDIASWTTLLACYANSCSVKAARKVFDEM 180
Query: 180 PERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGR 239
PER+V+S++ MI+ Y + +L LFRE+ +D + SVL AC + GR
Sbjct: 181 PERSVISYSAMIAAYVRGNRFREALDLFRELFSVKIEPSDSCVMSVLCACANLGALDVGR 240
Query: 240 SVHGYTVRTSLKPNII---LDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHC 296
V+ Y ++ K + + + TALID++ KC +E A VF+ ++++ W AM+ G
Sbjct: 241 WVYSYVCQS--KGDYVDSRIATALIDMFFKCGSIEHALLVFEGAKEKHVGEWTAMLSGLA 298
Query: 297 IHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYK 356
+HG E+ I+ F +V+ V P+ +TF+ ++ C + L+ EG YF +M +
Sbjct: 299 MHGLGEQLIEAFEKMVDSGV-----KPNGVTFVALLSGCSHSGLVNEGLYYFDRMESDFG 353
Query: 357 IKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAM 416
++P H+ C+ +L A L ++A +++ +MP + + + +W SLL+ CR V +
Sbjct: 354 VEPTVEHFGCVVDLLGRAGLIDQAMQLISEMPFEPN-----AAIWGSLLNACRVYKNVEI 408
Query: 417 VERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLKE 476
E A+ + +P + + Y LL++Y AG+W++V +V+ MK+ + PGC L+++
Sbjct: 409 GELAAQWLIKDEPWNGALYMTLLSLYREAGRWDEVEKVKLKMKEVGCRKGPGCSLIEVGG 468
Query: 477 VVEKLKVG 484
+ + VG
Sbjct: 469 ICYEFVVG 476
>gi|347954530|gb|AEP33765.1| organelle transcript processing 82, partial [Lepidium sativum]
Length = 672
Score = 256 bits (655), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 141/432 (32%), Positives = 225/432 (52%), Gaps = 45/432 (10%)
Query: 56 NAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALK 115
NA+I Y +C + + Y M+K P+ T V++ +CA++G +E G H
Sbjct: 166 NAMISGYVETCNFKEALELYKDMMKTNVKPDESTMVTVVSACAQSGSIELGRQLHSWIED 225
Query: 116 NGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHEL 175
+G + ++N LI++Y + G++ A L
Sbjct: 226 HGFGSNIKIVNVLIDLYS-------------------------------KCGEVETACGL 254
Query: 176 FDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARF 235
F + +++V+SWN +I G++ +L LF+EM++SG ND TM SVL AC
Sbjct: 255 FQGLAKKDVISWNTLIGGHTHMNLYKEALLLFQEMLRSGESPNDVTMLSVLPACAHLGAI 314
Query: 236 NEGRSVHGYTVR--TSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMIL 293
+ GR +H Y + + L T+LID+Y+KC +E A++VFDSM R+L WNAMI
Sbjct: 315 DIGRWIHVYINKRLKGVTNASSLLTSLIDMYAKCGDIEAAKQVFDSMLTRSLSSWNAMIF 374
Query: 294 GHCIHGKPEEGIKLFTAL-VNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMI 352
G +HGK LF+ + NG I PD+ITF+G++ AC + +L GR FR M
Sbjct: 375 GFAMHGKANAAFDLFSKMRKNG------IDPDDITFVGLLSACSHSGMLDLGRHIFRSMS 428
Query: 353 DFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQG 412
YKI P HY CM +L L +EA+E++R MP + D ++W SLL C+
Sbjct: 429 QDYKITPKLEHYGCMIDLLGHCGLFKEAKEMIRTMPMEPDG-----VIWCSLLKACKMHN 483
Query: 413 AVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLV 472
V + E A++ + ++P++ Y L N+YA AG+W+ VA++R L+ + + + PGC +
Sbjct: 484 NVELGESYAQNLIKIEPENPGSYVLLSNIYATAGRWDQVAKIRTLLNDKGIKKAPGCSSI 543
Query: 473 DLKEVVEKLKVG 484
++ VV + +G
Sbjct: 544 EIDSVVHEFIIG 555
Score = 192 bits (488), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 102/315 (32%), Positives = 173/315 (54%), Gaps = 5/315 (1%)
Query: 31 SADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTF 90
S F Y + +F+ I P N + + ++ + + Y+ MI G +PNSY+F
Sbjct: 9 SPHFDGLSYAISIFETIQEPNLLIWNTMFRGHALNSDSVTALKLYVCMISLGLLPNSYSF 68
Query: 91 VSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSP 150
L SCAK+ + G HG LK G D ++ V SLI+MY G ++ A +F + S
Sbjct: 69 PFLLKSCAKSKALIEGQQIHGHVLKLGYDLDMYVNTSLISMYAQNGRLEDAHKVFDRSSH 128
Query: 151 RDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREM 210
R ++S+ ++++G+ G ++ A +LFD + ++VVSWN MISGY ++ N +L+L+++M
Sbjct: 129 RHVVSYTALITGYASRGYINNARKLFDEISVKDVVSWNAMISGYVETCNFKEALELYKDM 188
Query: 211 MKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKV 270
MK+ + ++ TM +V++AC +S GR +H + NI + LIDLYSKC +V
Sbjct: 189 MKTNVKPDESTMVTVVSACAQSGSIELGRQLHSWIEDHGFGSNIKIVNVLIDLYSKCGEV 248
Query: 271 EVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIG 330
E A +F +A ++++ WN +I GH +E + LF ++ SP+++T +
Sbjct: 249 ETACGLFQGLAKKDVISWNTLIGGHTHMNLYKEALLLFQEMLR-----SGESPNDVTMLS 303
Query: 331 VICACVRAELLTEGR 345
V+ AC + GR
Sbjct: 304 VLPACAHLGAIDIGR 318
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 55/215 (25%), Positives = 107/215 (49%), Gaps = 28/215 (13%)
Query: 158 SIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRG 217
S++S H +S A +F+ + E N++ WN M G++ + + +LKL+ M+ G
Sbjct: 6 SVLSPHFDG--LSYAISIFETIQEPNLLIWNTMFRGHALNSDSVTALKLYVCMISLGLLP 63
Query: 218 NDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVF 277
N + +L +C +S EG+ +HG+ ++ ++ ++T+LI +Y++ ++E A +VF
Sbjct: 64 NSYSFPFLLKSCAKSKALIEGQQIHGHVLKLGYDLDMYVNTSLISMYAQNGRLEDAHKVF 123
Query: 278 DSMADRNLVCWNAMILGHCIHGKPEEGIKLF-----------TALVNGTVAG-------- 318
D + R++V + A+I G+ G KLF A+++G V
Sbjct: 124 DRSSHRHVVSYTALITGYASRGYINNARKLFDEISVKDVVSWNAMISGYVETCNFKEALE 183
Query: 319 -------GSISPDEITFIGVICACVRAELLTEGRK 346
++ PDE T + V+ AC ++ + GR+
Sbjct: 184 LYKDMMKTNVKPDESTMVTVVSACAQSGSIELGRQ 218
>gi|23617093|dbj|BAC20776.1| selenium-binding protein-like protein [Oryza sativa Japonica Group]
Length = 681
Score = 256 bits (655), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 143/456 (31%), Positives = 242/456 (53%), Gaps = 28/456 (6%)
Query: 39 YTVLVFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCA 98
Y + +F+ N+ F N +++ + P +F +N P+S+TF L S +
Sbjct: 97 YPLALFRRANSTSAFASNNLLRVLPH---PLPLTLFSRFRRRN---PHSFTF--LLASIS 148
Query: 99 K---------TGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMS 149
+ C G H LA+K G +L V N+L++ YG G + R +F ++
Sbjct: 149 NHLNAAGPSASACSFLGSHVHALAVKAGAAGDLFVRNALVHFYGVSGDVGAMRRVFDELP 208
Query: 150 P-RDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFR 208
RD+++WN +++G+VR+G M+ A E+FD MP R+ +SW+ ++ GY K +L +FR
Sbjct: 209 RVRDVLTWNEVLAGYVRAGMMTVAREVFDEMPVRDEISWSTLVGGYVKEEELEVALGVFR 268
Query: 209 EMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQ 268
M++ G R N + + L+A R G+ VH R+ + + + AL+D+Y+KC
Sbjct: 269 NMVEQGVRPNQAAVVTALSAAARLGLLEHGKFVHNVVQRSGMPVCMNVGAALVDMYAKCG 328
Query: 269 KVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITF 328
V VA+ VFD M R++ WNAMI G HG + ++LF ++ +SP +TF
Sbjct: 329 CVAVAREVFDGMRRRDVFAWNAMICGLAAHGLGRDAVELFERFIS-----EGLSPTNVTF 383
Query: 329 IGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMP 388
+GV+ C R+ L+ EGR+YF+ +++ Y+I+P HY CM +L A L EA E++ M
Sbjct: 384 VGVLNGCSRSGLVAEGRRYFKLIVEKYRIEPEMEHYGCMVDLLGRAGLVPEAIELIEGM- 442
Query: 389 EDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQW 448
+++ + ++W ++LS C+ G V + + +++DP Y L +YA A +W
Sbjct: 443 ----HIAPDPVLWGTILSSCKTHGLVDLGVSVGNKLIELDPTHSGYYVLLSGIYAKANKW 498
Query: 449 EDVARVRELMKKRRMGRMPGCRLVDLKEVVEKLKVG 484
++V VR+LM R + G L++ V K VG
Sbjct: 499 DEVREVRKLMSSRGTNKSAGWSLMEAHGKVHKFLVG 534
>gi|357119334|ref|XP_003561397.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g62890-like [Brachypodium distachyon]
Length = 635
Score = 256 bits (655), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 131/380 (34%), Positives = 220/380 (57%), Gaps = 11/380 (2%)
Query: 106 GGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSP-RDLISWNSIVSGHV 164
G H LA+K G +L V N+L + YG G + R +F ++ RD+++WN++++G+V
Sbjct: 149 GSHVHALAVKAGAAGDLYVRNALTHFYGVCGDVGAMRTVFDELPRVRDVVTWNAVLAGYV 208
Query: 165 RSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMAS 224
R+G + AA E+F+ MP R+ VSW+ ++ GY K G +L +FR+M++ G R N+ + +
Sbjct: 209 RAGMVRAAREVFEEMPVRDEVSWSTLVGGYVKEGELDVALGVFRDMVEKGVRVNEAAVVT 268
Query: 225 VLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRN 284
L+A + GR VH RT + ++ + AL+D++SKC V VA+ VFD M R+
Sbjct: 269 ALSAAAQMGLLEHGRFVHEVVQRTGMPVSVNVGAALVDMFSKCGCVAVAREVFDGMPRRD 328
Query: 285 LVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEG 344
+ WNAMI G HG ++ ++LF ++ + P +ITF+GV+ AC R L+ EG
Sbjct: 329 VFAWNAMICGLASHGLGQDAVELFWRFLD-----EGLWPTDITFVGVLNACSRCGLVAEG 383
Query: 345 RKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSL 404
R+YF+ M+D Y+I+P HY CM +L A L EA E++ M +++ + ++W ++
Sbjct: 384 RRYFKLMVDKYRIEPEMEHYGCMVDLLGRAGLVSEAIELIEGM-----HIAPDPVLWGTV 438
Query: 405 LSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMG 464
LS C+ V + + ++++P Y L ++YA A +W++V VR+LM R G
Sbjct: 439 LSACKTHNLVDLGITVGNKLIELEPAHDGHYVLLASIYAKAKKWDEVREVRKLMSSRGTG 498
Query: 465 RMPGCRLVDLKEVVEKLKVG 484
+ G L++ + + K VG
Sbjct: 499 KSAGWSLMEAQGNLHKFLVG 518
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 92/405 (22%), Positives = 156/405 (38%), Gaps = 91/405 (22%)
Query: 56 NAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALK 115
+ ++ Y D + + M++ G N V+ + A+ G +E G H + +
Sbjct: 232 STLVGGYVKEGELDVALGVFRDMVEKGVRVNEAAVVTALSAAAQMGLLEHGRFVHEVVQR 291
Query: 116 NGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHEL 175
G+ + V +L++M+ G + AR +F M RD+ +WN+
Sbjct: 292 TGMPVSVNVGAALVDMFSKCGCVAVAREVFDGMPRRDVFAWNA----------------- 334
Query: 176 FDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARF 235
MI G + G +++LF + G D T VL AC R
Sbjct: 335 --------------MICGLASHGLGQDAVELFWRFLDEGLWPTDITFVGVLNACSRCGLV 380
Query: 236 NEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGH 295
EGR ++D Y ++E + M D +LG
Sbjct: 381 AEGRRYF---------------KLMVDKY----RIEPEMEHYGCMVD---------LLGR 412
Query: 296 CIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFY 355
G E I+L + G I+PD + + V+ AC L+ G ++I+
Sbjct: 413 A--GLVSEAIEL--------IEGMHIAPDPVLWGTVLSACKTHNLVDLGITVGNKLIE-- 460
Query: 356 KIKP-NFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAV 414
++P + HY +A++YA A+ +E E+ + M + + +S W SL QG
Sbjct: 461 -LEPAHDGHYVLLASIYAKAKKWDEVREVRKLM---SSRGTGKSAGW----SLMEAQG-- 510
Query: 415 AMVERLAKSFV-DMDPQDFSRYQFLLNV----YAVAGQWEDVARV 454
L K V DMD +D + +L++ A AG DV+ V
Sbjct: 511 ----NLHKFLVGDMDHKDSVQIYNMLDMINRRLADAGYVPDVSSV 551
>gi|115470713|ref|NP_001058955.1| Os07g0163900 [Oryza sativa Japonica Group]
gi|113610491|dbj|BAF20869.1| Os07g0163900 [Oryza sativa Japonica Group]
Length = 664
Score = 256 bits (654), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 143/456 (31%), Positives = 242/456 (53%), Gaps = 28/456 (6%)
Query: 39 YTVLVFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCA 98
Y + +F+ N+ F N +++ + P +F +N P+S+TF L S +
Sbjct: 97 YPLALFRRANSTSAFASNNLLRVLPH---PLPLTLFSRFRRRN---PHSFTF--LLASIS 148
Query: 99 K---------TGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMS 149
+ C G H LA+K G +L V N+L++ YG G + R +F ++
Sbjct: 149 NHLNAAGPSASACSFLGSHVHALAVKAGAAGDLFVRNALVHFYGVSGDVGAMRRVFDELP 208
Query: 150 P-RDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFR 208
RD+++WN +++G+VR+G M+ A E+FD MP R+ +SW+ ++ GY K +L +FR
Sbjct: 209 RVRDVLTWNEVLAGYVRAGMMTVAREVFDEMPVRDEISWSTLVGGYVKEEELEVALGVFR 268
Query: 209 EMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQ 268
M++ G R N + + L+A R G+ VH R+ + + + AL+D+Y+KC
Sbjct: 269 NMVEQGVRPNQAAVVTALSAAARLGLLEHGKFVHNVVQRSGMPVCMNVGAALVDMYAKCG 328
Query: 269 KVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITF 328
V VA+ VFD M R++ WNAMI G HG + ++LF ++ +SP +TF
Sbjct: 329 CVAVAREVFDGMRRRDVFAWNAMICGLAAHGLGRDAVELFERFIS-----EGLSPTNVTF 383
Query: 329 IGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMP 388
+GV+ C R+ L+ EGR+YF+ +++ Y+I+P HY CM +L A L EA E++ M
Sbjct: 384 VGVLNGCSRSGLVAEGRRYFKLIVEKYRIEPEMEHYGCMVDLLGRAGLVPEAIELIEGM- 442
Query: 389 EDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQW 448
+++ + ++W ++LS C+ G V + + +++DP Y L +YA A +W
Sbjct: 443 ----HIAPDPVLWGTILSSCKTHGLVDLGVSVGNKLIELDPTHSGYYVLLSGIYAKANKW 498
Query: 449 EDVARVRELMKKRRMGRMPGCRLVDLKEVVEKLKVG 484
++V VR+LM R + G L++ V K VG
Sbjct: 499 DEVREVRKLMSSRGTNKSAGWSLMEAHGKVHKFLVG 534
>gi|357477477|ref|XP_003609024.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355510079|gb|AES91221.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 544
Score = 256 bits (654), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 166/531 (31%), Positives = 255/531 (48%), Gaps = 65/531 (12%)
Query: 1 MKQLLQIQAHLITSGLFFNNSFWTINLLKHSA--DFGSPDYTVLVFK----CINNPGTFC 54
M +L Q+QA + SGL + T L+ SA FG+ + +F+ I+NP F
Sbjct: 19 MSELKQLQAIITKSGLHSHIPL-TTKLIFFSALSPFGNLSHAYSLFQHSSILIHNP--FI 75
Query: 55 VNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKT-GCVERGGMC---- 109
N +I+A+S+SC P Q ++ Y QM+ N + +SYT + +C++ ++ G C
Sbjct: 76 SNTMIRAFSHSCFPLQALLIYNQMLINNVVSDSYTCNFVLKACSRAYKLIQESGSCDDDD 135
Query: 110 -------------HGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQ--------- 147
H +K G + V NSL+ Y G + AR +F Q
Sbjct: 136 DNLVVVYNKGTEIHCRVIKIGFQNDPSVQNSLLYFYSQCGLVSVARYLFDQIKDTSLVSW 195
Query: 148 ----------------------MSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVV 185
M + +ISWN++++ ++R GD+ AA +F MPERN V
Sbjct: 196 NIMISAYDRVDDYELADHLLELMPCKTVISWNTLIARYIRLGDVQAARRVFGCMPERNAV 255
Query: 186 SWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYT 245
SWN MI+G + +L+LF EM +G + + T+ S+L AC + G ++
Sbjct: 256 SWNSMIAGCVSVRDYAGALELFSEMQNAGVKPTEVTLISILGACAETGALEIGHKIYESL 315
Query: 246 VRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGI 305
K L AL+++Y KC + +A +F+ M + + CWNAM++G +HG EE
Sbjct: 316 KVCEHKIESYLGNALVNMYCKCGNLSLAWEIFNGMKMKTVSCWNAMVIGLAVHGYCEEVF 375
Query: 306 KLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYW 365
+LFT + GGSI PD +TFIGV+ AC L+ + R YF M+ YKI P+ HY
Sbjct: 376 QLFTEMEESL--GGSIRPDRVTFIGVLVACSHKGLVDKARWYFDHMVKRYKIVPDSKHYG 433
Query: 366 CMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFV 425
CM +L L EEA +I+ P N ++W +LL CR Q + E K
Sbjct: 434 CMVDLLTRRGLLEEAYQIIMTAPFQNS-----VVLWRTLLGACRTQSNTELAEISFKQLA 488
Query: 426 DMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLKE 476
+ Y L N+YA AG+W++V R+R M + R G +++KE
Sbjct: 489 KLKQLIDGDYVLLSNIYAEAGRWDEVERLRSEMDYLHVPRQAGYSQINMKE 539
>gi|147799847|emb|CAN66059.1| hypothetical protein VITISV_017037 [Vitis vinifera]
Length = 546
Score = 256 bits (654), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 156/519 (30%), Positives = 264/519 (50%), Gaps = 63/519 (12%)
Query: 4 LLQIQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAYS 63
L Q+ A +I GL + F L + YT VF +++P T N IK YS
Sbjct: 41 LEQVHARIIRKGLH-QDHFLISQFLTLCNSLSNFSYTTSVFNGVSSPSTVLWNTYIKGYS 99
Query: 64 NSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELP 123
+ V +++M ++ +P+ +T+ SL +C+K V+ G HG A++ GV ++
Sbjct: 100 ENYSVSLTVSLFIRMKRSDAVPDKFTYPSLIKACSKVCGVKEGVAFHGSAVRCGVGGDVF 159
Query: 124 VMNSLINMYGCFGAMDCARNMFVQMSPRDLISW--------------------------- 156
VM SLI++YG G + CAR +F +M R+++SW
Sbjct: 160 VMTSLIDLYGKCGEILCARKVFDEMGERNVVSWTAMIAGYASFSDLVEARKLFDEMPEKN 219
Query: 157 ----NSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGC---------- 202
N+I+SG+V+ GD+ +A ++FD MP RNVVS+ MI GY+KSG+
Sbjct: 220 AVSWNAIISGYVKCGDLRSARKMFDEMPHRNVVSFTTMIDGYAKSGDMASARFVFEEAPE 279
Query: 203 ------SLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSL---KPN 253
S +FR + + ++ M S+++AC + + V Y ++S+ + +
Sbjct: 280 RDVVAWSALIFRVCAEWNVKPDEFIMVSLMSACSQMGSLELAKWVDDYVRKSSIDVHRAH 339
Query: 254 IILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVN 313
+I ALID+ +KC ++ A ++F+ M R+L+ + +M+ G IHG + + LF+ ++N
Sbjct: 340 VI--AALIDMNAKCGSMDRATKLFEEMPKRDLISYCSMMQGLSIHGCGPQAVSLFSRMLN 397
Query: 314 GTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAG 373
++PD++ F ++ AC RA L+ EG YF M Y I P+ HY CM +L
Sbjct: 398 -----EGLTPDDVAFTVILTACSRAGLVDEGCYYFESMKTDYSIVPSPDHYACMVDLLGR 452
Query: 374 AELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFS 433
A +EA E+L+ MP + + W +LL C+ + + E +A +++PQ+
Sbjct: 453 AGRLKEAYELLKSMPVEP-----HAGAWGALLGACKLHCDIELGEVVADQLFELEPQNAG 507
Query: 434 RYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLV 472
Y L N+YA A QW DV+ +R M++R + ++PGC +
Sbjct: 508 NYVLLSNIYAAAEQWLDVSLLRNKMRERGIRKIPGCSWI 546
>gi|125557337|gb|EAZ02873.1| hypothetical protein OsI_25005 [Oryza sativa Indica Group]
Length = 651
Score = 256 bits (654), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 143/456 (31%), Positives = 242/456 (53%), Gaps = 28/456 (6%)
Query: 39 YTVLVFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCA 98
Y + +F+ N+ F N +++ + P +F +N P+S+TF L S +
Sbjct: 97 YPLALFRRANSTSAFASNNLLRVLPH---PLPLTLFSRFRRRN---PHSFTF--LLASIS 148
Query: 99 K---------TGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMS 149
+ C G H LA+K G +L V N+L++ YG G + R +F ++
Sbjct: 149 NHLNAAGPSASACSFLGSHVHALAVKAGAAGDLFVRNALVHFYGVSGDVGAMRRVFDELP 208
Query: 150 P-RDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFR 208
RD+++WN +++G+VR+G M+ A E+FD MP R+ +SW+ ++ GY K +L +FR
Sbjct: 209 RVRDVLTWNEVLAGYVRAGMMTVAREVFDEMPVRDEISWSTLVGGYVKEEELEVALGVFR 268
Query: 209 EMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQ 268
M++ G R N + + L+A R G+ VH R+ + + + AL+D+Y+KC
Sbjct: 269 NMVEQGVRPNQAAVVTALSAAARLGLLEHGKFVHNVVQRSGMPVCMNVGAALVDMYAKCG 328
Query: 269 KVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITF 328
V VA+ VFD M R++ WNAMI G HG + ++LF ++ +SP +TF
Sbjct: 329 CVAVAREVFDGMRRRDVFAWNAMICGLAAHGLGRDAVELFERFIS-----EGLSPTNVTF 383
Query: 329 IGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMP 388
+GV+ C R+ L+ EGR+YF+ +++ Y+I+P HY CM +L A L EA E++ M
Sbjct: 384 VGVLNGCSRSGLVAEGRRYFKLIVEKYRIEPEMEHYGCMVDLLGRAGLVPEAIELIEGM- 442
Query: 389 EDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQW 448
+++ + ++W ++LS C+ G V + + +++DP Y L +YA A +W
Sbjct: 443 ----HIAPDPVLWGTILSSCKTHGLVDLGVSVGNKLIELDPTHSGYYVLLSGIYAKANKW 498
Query: 449 EDVARVRELMKKRRMGRMPGCRLVDLKEVVEKLKVG 484
++V VR+LM R + G L++ V K VG
Sbjct: 499 DEVREVRKLMSSRGTNKSAGWSLMEAHGKVHKFLVG 534
>gi|225425182|ref|XP_002264325.1| PREDICTED: pentatricopeptide repeat-containing protein At2g13600
[Vitis vinifera]
Length = 684
Score = 256 bits (654), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 140/430 (32%), Positives = 242/430 (56%), Gaps = 18/430 (4%)
Query: 56 NAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALK 115
N++I Y + + + +++M+ +G P+ T S+ +CA ++ G H +K
Sbjct: 217 NSLITCYEQNGPASEALEVFVRMMDSGLEPDEVTLASVVSACASLCALKEGLQIHARVVK 276
Query: 116 -NGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHE 174
N +L + N+L++MY ++ AR +F +MS R+++S S+VSG+ R+ + AA
Sbjct: 277 TNKFRDDLVLGNALVDMYAKCSKVNEARRVFDRMSIRNVVSETSMVSGYARAASVKAARF 336
Query: 175 LFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSAR 234
+F M +RNVVSWN +I+GY+++G +L+LFR + + T ++L+AC A
Sbjct: 337 MFSKMTQRNVVSWNALIAGYTQNGENEEALRLFRLLKRESIWPTHYTFGNLLSACANLAD 396
Query: 235 FNEGRSVH------GYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCW 288
GR H G+ ++ + +I + +LID+Y KC +E RVF+ M +R+ V W
Sbjct: 397 LLLGRQAHTHVLKQGFEFQSGAESDIFVGNSLIDMYMKCGSIEDGSRVFEKMKERDCVSW 456
Query: 289 NAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYF 348
NA+I+G+ +G E +++F ++ V G PD +T IGV+CAC A L+ EGR YF
Sbjct: 457 NAIIVGYAQNGYGAEALQIFRKML---VCGE--KPDHVTMIGVLCACSHAGLVEEGRHYF 511
Query: 349 RQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLC 408
M + + + P HY CM +L A EA+ ++ MP + D +++W SLL+ C
Sbjct: 512 FSMEE-HGLIPLKDHYTCMVDLLGRAGCLNEAKNLIEAMPVNPD-----AVVWGSLLAAC 565
Query: 409 RFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPG 468
+ G + M + A+ +++DP + Y L N+YA G+W DV RVR+LM+++ + + PG
Sbjct: 566 KVHGNIEMGKHAAEKLLEIDPWNSGPYVLLSNMYAELGRWGDVVRVRKLMRQQGVTKQPG 625
Query: 469 CRLVDLKEVV 478
C ++++ V
Sbjct: 626 CSWIEVESRV 635
Score = 179 bits (454), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 108/383 (28%), Positives = 186/383 (48%), Gaps = 14/383 (3%)
Query: 78 MIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGA 137
++++ ++PNS F L SC ++ + H L E+ + N LI++YG
Sbjct: 6 LVRDLYLPNSSPFAKLLDSCLRSRSARGTRLVHARILMTQFSMEIFIQNRLIDVYGKCDC 65
Query: 138 MDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKS 197
+D AR +F +M R+ +WNS++S +SG + A LF MPE + SWN M+SG+++
Sbjct: 66 LDDARKLFDRMPQRNTFTWNSLISVLTKSGFLDEAARLFGSMPEPDQCSWNSMVSGFAQH 125
Query: 198 GNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILD 257
SL+ F +M + F N+ + S L+AC N G VH ++ ++ +
Sbjct: 126 DRFEESLEYFVKMHREDFLLNEYSFGSALSACAGLMDLNMGTQVHALVSKSRYSTDVYMG 185
Query: 258 TALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVA 317
+ALID+YSKC V A+ VF M +RNLV WN++I + +G E +++F +++
Sbjct: 186 SALIDMYSKCGSVACAEEVFSGMIERNLVTWNSLITCYEQNGPASEALEVFVRMMD---- 241
Query: 318 GGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELT 377
+ PDE+T V+ AC L EG + +++ K + + + ++YA
Sbjct: 242 -SGLEPDEVTLASVVSACASLCALKEGLQIHARVVKTNKFRDDLVLGNALVDMYAKCSKV 300
Query: 378 EEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQF 437
EA + D MS ++ VS S+ A V+ F M ++ +
Sbjct: 301 NEARRVF-------DRMSIRNV--VSETSMVSGYARAASVKAARFMFSKMTQRNVVSWNA 351
Query: 438 LLNVYAVAGQWEDVARVRELMKK 460
L+ Y G+ E+ R+ L+K+
Sbjct: 352 LIAGYTQNGENEEALRLFRLLKR 374
Score = 135 bits (340), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 93/359 (25%), Positives = 162/359 (45%), Gaps = 68/359 (18%)
Query: 20 NSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMI 79
N+F +L+ G D +F + P N+++ ++ ++ + ++++M
Sbjct: 80 NTFTWNSLISVLTKSGFLDEAARLFGSMPEPDQCSWNSMVSGFAQHDRFEESLEYFVKMH 139
Query: 80 KNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMD 139
+ F+ N Y+F S +CA + G H L K+ ++ + ++LI+MY G++
Sbjct: 140 REDFLLNEYSFGSALSACAGLMDLNMGTQVHALVSKSRYSTDVYMGSALIDMYSKCGSVA 199
Query: 140 CARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGN 199
CA +F M R+L++WNS+ I+ Y ++G
Sbjct: 200 CAEEVFSGMIERNLVTWNSL-------------------------------ITCYEQNGP 228
Query: 200 PGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTS-LKPNIILDT 258
+L++F MM SG ++ T+ASV++AC EG +H V+T+ + +++L
Sbjct: 229 ASEALEVFVRMMDSGLEPDEVTLASVVSACASLCALKEGLQIHARVVKTNKFRDDLVLGN 288
Query: 259 ALIDLYSKCQKVEVAQRVFDSMA-------------------------------DRNLVC 287
AL+D+Y+KC KV A+RVFD M+ RN+V
Sbjct: 289 ALVDMYAKCSKVNEARRVFDRMSIRNVVSETSMVSGYARAASVKAARFMFSKMTQRNVVS 348
Query: 288 WNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRK 346
WNA+I G+ +G+ EE ++LF L SI P TF ++ AC L GR+
Sbjct: 349 WNALIAGYTQNGENEEALRLFRLLKR-----ESIWPTHYTFGNLLSACANLADLLLGRQ 402
>gi|357501951|ref|XP_003621264.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355496279|gb|AES77482.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 519
Score = 256 bits (653), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 155/514 (30%), Positives = 257/514 (50%), Gaps = 53/514 (10%)
Query: 1 MKQLLQIQAHLITSGLFFNNSFWTINLLKHSADFGSP-------DYTVLVFKCINNPGTF 53
+K L QI A +I +G N +F +L S P +Y +F I P TF
Sbjct: 15 LKTLKQIHALMIINGFNNNVNFLGDLVLTISTSLVGPTATPTVTNYAHQLFAQIPQPDTF 74
Query: 54 CVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLA 113
N +I+ S S P + + Y +M ++ +SYTF + +C + V G HG+
Sbjct: 75 MYNVMIRGSSQSPNPLRAISLYTEMHRHFVKGDSYTFPFVLKACTRLFWVNTGSAVHGMV 134
Query: 114 LKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAH 173
L+ G V N+L+ + G ++ A ++F D+++W+S+++G+ R GD+ A
Sbjct: 135 LRLGFGSNAVVRNTLLVFHAKCGDLNVATSLFDDSCKGDVVAWSSLIAGYARRGDLKVAR 194
Query: 174 ELFDIMPERNVVSWNIMISGYSKSGN-------------------------------PGC 202
+LF+ MPER++VSWN+MI+GY K G
Sbjct: 195 KLFNEMPERDLVSWNVMITGYVKQGEMESARMLFDEAPVKDVVSWNAMIAGYVVCGLSKQ 254
Query: 203 SLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSL-KPNIILDTALI 261
+L+LF EM ++G ++ T+ S+L+AC G+ VH + S+ K + +L ALI
Sbjct: 255 ALELFNEMCRAGVFPDEVTLLSLLSACADLGDLENGKKVHAKVMEISMGKLSTLLGNALI 314
Query: 262 DLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSI 321
D+Y+KC ++ + VF S+ D++++ WN++I+G +HG +E + LF + I
Sbjct: 315 DMYAKCGNIKESLDVFWSITDKDVISWNSVIVGMALHGHGKESLSLFKMMQR-----TKI 369
Query: 322 SPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAE 381
P+EITF+GV+ AC A + EG KYF M YKI+PN H CM ++ A L +EA
Sbjct: 370 CPNEITFVGVLVACSHAGEIDEGYKYFDLMSSEYKIEPNIRHCGCMVDMLGRAGLLKEAA 429
Query: 382 EILRKMPEDNDNMSFE--SIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLL 439
+ + D+M E +I+W +LL+ C+ G V + + + M Y +
Sbjct: 430 KFI-------DSMKIEPNAIIWRTLLAACKVHGDVELAKVANEKLFSMRKDHSGDYVLMS 482
Query: 440 NVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVD 473
N+YA G+W+ +VR+LM + ++ G V+
Sbjct: 483 NLYASRGEWDGAEKVRKLMDDSGVTKIRGSSFVE 516
>gi|334185836|ref|NP_001190038.1| tetratricopeptide repeat-like family protein [Arabidopsis thaliana]
gi|218546754|sp|P0C899.1|PP271_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
At3g49142
gi|332644983|gb|AEE78504.1| tetratricopeptide repeat-like family protein [Arabidopsis thaliana]
Length = 686
Score = 256 bits (653), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 156/521 (29%), Positives = 255/521 (48%), Gaps = 48/521 (9%)
Query: 1 MKQLLQIQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIK 60
++ L + + +I L N+S + L++ A VF I +N +I+
Sbjct: 55 IRTLRTVHSRIILEDLRCNSSLG-VKLMRAYASLKDVASARKVFDEIPERNVIIINVMIR 113
Query: 61 AYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDF 120
+Y N+ +GV + M P+ YTF + +C+ +G + G HG A K G+
Sbjct: 114 SYVNNGFYGEGVKVFGTMCGCNVRPDHYTFPCVLKACSCSGTIVIGRKIHGSATKVGLSS 173
Query: 121 ELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVR--------------- 165
L V N L++MYG G + AR + +MS RD++SWNS+V G+ +
Sbjct: 174 TLFVGNGLVSMYGKCGFLSEARLVLDEMSRRDVVSWNSLVVGYAQNQRFDDALEVCREME 233
Query: 166 -------SGDMSA---------------AHELFDIMPERNVVSWNIMISGYSKSGNPGCS 203
+G M++ ++F M ++++VSWN+MI Y K+ P +
Sbjct: 234 SVKISHDAGTMASLLPAVSNTTTENVMYVKDMFFKMGKKSLVSWNVMIGVYMKNAMPVEA 293
Query: 204 LKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDL 263
++L+ M GF + ++ SVL ACG ++ + G+ +HGY R L PN++L+ ALID+
Sbjct: 294 VELYSRMEADGFEPDAVSITSVLPACGDTSALSLGKKIHGYIERKKLIPNLLLENALIDM 353
Query: 264 YSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISP 323
Y+KC +E A+ VF++M R++V W AMI + G+ + + LF+ L + + P
Sbjct: 354 YAKCGCLEKARDVFENMKSRDVVSWTAMISAYGFSGRGCDAVALFSKLQD-----SGLVP 408
Query: 324 DEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEI 383
D I F+ + AC A LL EGR F+ M D YKI P H CM +L A +EA
Sbjct: 409 DSIAFVTTLAACSHAGLLEEGRSCFKLMTDHYKITPRLEHLACMVDLLGRAGKVKEAYRF 468
Query: 384 LRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYA 443
++ M +M +W +LL CR + A + P+ Y L N+YA
Sbjct: 469 IQDM-----SMEPNERVWGALLGACRVHSDTDIGLLAADKLFQLAPEQSGYYVLLSNIYA 523
Query: 444 VAGQWEDVARVRELMKKRRMGRMPGCRLVDLKEVVEKLKVG 484
AG+WE+V +R +MK + + + PG V++ ++ VG
Sbjct: 524 KAGRWEEVTNIRNIMKSKGLKKNPGASNVEVNRIIHTFLVG 564
>gi|357473845|ref|XP_003607207.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355508262|gb|AES89404.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 542
Score = 255 bits (652), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 164/529 (31%), Positives = 257/529 (48%), Gaps = 63/529 (11%)
Query: 1 MKQLLQIQAHLITSGLFFNNSFWTINLLKHSA--DFGSPDYTVLVFK----CINNPGTFC 54
+ +L Q+QA + SGL + T L+ SA FG+ + +F+ I+NP F
Sbjct: 19 ISELKQLQAIITKSGLHSHIPL-TTKLIFFSALSPFGNLSHAYSLFQHSSILIHNP--FI 75
Query: 55 VNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKT-GCVERGGMC---- 109
N +I+A+S+SC P Q ++ Y QM+ N + +SYT + +C++ ++ G C
Sbjct: 76 SNTMIRAFSHSCFPLQALLIYNQMLINNVVSDSYTCNFVLKACSRAYKLIQESGSCDDDN 135
Query: 110 -----------HGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQ----------- 147
H +K G + V NSL+ Y G + AR++F Q
Sbjct: 136 LVVVYNKGTEIHCRVIKIGFQNDPSVQNSLLYFYSQCGLVSVARHLFDQIKDTSLVSWNI 195
Query: 148 --------------------MSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSW 187
M + ++SWN++++ ++R GD+ AA +F MPERN VSW
Sbjct: 196 MISAYDLVNDYESADYLLELMPCKTVVSWNTLIARYIRLGDVQAARRVFGCMPERNAVSW 255
Query: 188 NIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVR 247
N MI+G + +L+LF EM +G + + T+ S+L AC + G ++
Sbjct: 256 NSMIAGCVSVRDYAGALELFSEMQNAGVKPTEVTLISILGACAETGALEIGHKIYESLKV 315
Query: 248 TSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKL 307
K L AL+++Y KC + +A +F+ M + + CWNAM++G +HG EE +L
Sbjct: 316 CEHKIESYLGNALVNMYCKCGNLSLAWEIFNGMKMKTVSCWNAMVIGLAVHGYCEEVFQL 375
Query: 308 FTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCM 367
FT + GGSI PD +TFIGV+ AC L+ + R YF M+ YKI P+ HY CM
Sbjct: 376 FTEMEESL--GGSIRPDRVTFIGVLVACSHKGLVDKARWYFDHMVKRYKIVPDSKHYGCM 433
Query: 368 ANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDM 427
+L + L EEA +I+ P N ++W +LL CR Q + E K +
Sbjct: 434 VDLLSRWGLLEEAYQIIMTAPFQNS-----VVLWRTLLGACRTQSNTELAEISFKQLAKL 488
Query: 428 DPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLKE 476
Y L N+YA AG+W++V R+R M + R G +++KE
Sbjct: 489 KQLIDGDYVLLSNIYAEAGRWDEVERLRSEMDYLHVPRQAGYSQINMKE 537
>gi|255578276|ref|XP_002530005.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223530484|gb|EEF32367.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 499
Score = 255 bits (652), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 155/476 (32%), Positives = 250/476 (52%), Gaps = 19/476 (3%)
Query: 1 MKQLLQIQAHLITSGLFFNNSFWTINLLKHSADFGSPD--YTVLVFKCINNPGTFCVNAV 58
M L QI AH + + L N+S +L+ +A S D Y +F + P TF N +
Sbjct: 29 MNHLKQIHAHSLLTDLH-NHSVILGKMLRFAAVSPSGDLPYAQRLFDQMPQPNTFFYNTI 87
Query: 59 IKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVE------RGGMCHGL 112
I+ Y+ S P V + QM +N P+ +TF L + ++ V HG
Sbjct: 88 IRGYAKSSSPSYCVNLFNQMRQNHVDPDEFTFNFLIKARSRVHKVHNFPSTLECDEIHGA 147
Query: 113 ALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAA 172
K G L V N+LIN+Y G+ A +F + D++SW+ +V HVR G++ A
Sbjct: 148 VFKYGFCSHLFVQNALINLYAVKGSPAAAWRVFNETVGVDVVSWSGLVLAHVRGGELELA 207
Query: 173 HELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRS 232
++FD MPE++VVSW M+SGYSK+ +L+LF EM +G R ++ T+ SV++AC
Sbjct: 208 RQVFDDMPEKDVVSWTAMVSGYSKANCSREALELFWEMSDAGIRPDEVTIVSVISACTNL 267
Query: 233 ARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMI 292
G +VH Y + L ALI++Y+KC V+ A RVF++M ++L+ WN+MI
Sbjct: 268 GDVETGMNVHSYINENGFGWMVSLCNALINMYAKCGCVDRAWRVFNNMKRKSLITWNSMI 327
Query: 293 LGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMI 352
HG E+ +LF+ ++N +A PD ITF+ ++ A L+ EG + F+ M
Sbjct: 328 SACANHGYAEDAFELFSCMLNSGIA-----PDGITFLALLIAYTHKGLVDEGYRLFQIME 382
Query: 353 DFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQG 412
Y I+ + HY C+ ++ A EEA E++ MP +++ I+W +LL+ CR G
Sbjct: 383 RDYGIEASIEHYGCIVDMLGRAGRLEEAYELIVTMPIPSND-----IVWGALLAACRIYG 437
Query: 413 AVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPG 468
V M ER+ K +++ P + Y L ++Y +G+ + +R+ M++ + PG
Sbjct: 438 DVNMGERVVKKLLELKPDEGGYYILLRDIYVASGRTAEANHIRQAMQESGAMKNPG 493
>gi|357498595|ref|XP_003619586.1| hypothetical protein MTR_6g059820 [Medicago truncatula]
gi|355494601|gb|AES75804.1| hypothetical protein MTR_6g059820 [Medicago truncatula]
Length = 528
Score = 255 bits (652), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 151/495 (30%), Positives = 261/495 (52%), Gaps = 30/495 (6%)
Query: 1 MKQLLQIQAHLITSGLFFNNSFWTINLLKH-SADFGSPDYTVLVFKCINNPGTFCVNAVI 59
+ QL Q+Q+HL T G F+ L++ S + + Y +F I++P + A+I
Sbjct: 19 LNQLKQLQSHLTTLG-HSQTHFYAFKLIRFCSLNLSNLHYAHQIFNHIHSPNIYLFTAII 77
Query: 60 KAYSNSCVPDQGVVFYL--QMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNG 117
A+S+ Q F L M+ + PN++ + + S + V+ + H +K G
Sbjct: 78 TAFSSQ----QHTTFKLFKTMLNSNIRPNNFIYPHVLKSVKERFLVD---LVHAQIVKCG 130
Query: 118 VDFELPVMNSLINMYG-CFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELF 176
V SL++ Y G + A +F +MS R+++ + +VSG++R GD+ +F
Sbjct: 131 FLNYPVVETSLVDSYSKVLGGLRDAHKVFDEMSERNIVVFTVLVSGYLRVGDVEKGLMVF 190
Query: 177 DIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMM------KSGF----RGNDKTMASVL 226
D M +R+V +WN +ISG +++G ++LFREM+ + GF + N T+ VL
Sbjct: 191 DEMVDRDVPAWNAVISGCTQNGFFSEGIRLFREMVFAAGLGEGGFCKGNKPNQVTVVCVL 250
Query: 227 TACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLV 286
+ACG G+ +HGY R + + AL+D+Y KC +E+A++VF+ + L
Sbjct: 251 SACGHGGMLQLGKWIHGYVYRHGFVVDSFVSNALVDMYGKCGSLELARKVFEMDQRKGLT 310
Query: 287 CWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRK 346
WN+MI + +HGK E+ I F +V GG + PDE+TFIG++ AC L+ +G
Sbjct: 311 SWNSMINCYALHGKCEDAITFFEKMVE---CGGGVRPDEVTFIGLLNACTHGGLVEQGCG 367
Query: 347 YFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLS 406
YF MI Y I+P AHY C+ +L A +EA ++++ M +M + ++W SLL+
Sbjct: 368 YFEMMIKEYGIEPQIAHYGCLIDLLGRAGQFDEAMDVVKGM-----SMEPDEVVWGSLLN 422
Query: 407 LCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRM 466
C+ G + E AK V++DP + L N+Y G+W+++ V +K+++ ++
Sbjct: 423 GCKVHGRTDLAEFAAKKLVEIDPHNGGYGTMLANIYGQLGKWDEMRNVWSKLKQQKSYKI 482
Query: 467 PGCRLVDLKEVVEKL 481
PGC +++ + V +
Sbjct: 483 PGCSWIEVDDKVHQF 497
>gi|6522552|emb|CAB61996.1| putative protein [Arabidopsis thaliana]
Length = 1229
Score = 255 bits (652), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 156/521 (29%), Positives = 255/521 (48%), Gaps = 48/521 (9%)
Query: 1 MKQLLQIQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIK 60
++ L + + +I L N+S + L++ A VF I +N +I+
Sbjct: 55 IRTLRTVHSRIILEDLRCNSSLG-VKLMRAYASLKDVASARKVFDEIPERNVIIINVMIR 113
Query: 61 AYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDF 120
+Y N+ +GV + M P+ YTF + +C+ +G + G HG A K G+
Sbjct: 114 SYVNNGFYGEGVKVFGTMCGCNVRPDHYTFPCVLKACSCSGTIVIGRKIHGSATKVGLSS 173
Query: 121 ELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVR--------------- 165
L V N L++MYG G + AR + +MS RD++SWNS+V G+ +
Sbjct: 174 TLFVGNGLVSMYGKCGFLSEARLVLDEMSRRDVVSWNSLVVGYAQNQRFDDALEVCREME 233
Query: 166 -------SGDMSA---------------AHELFDIMPERNVVSWNIMISGYSKSGNPGCS 203
+G M++ ++F M ++++VSWN+MI Y K+ P +
Sbjct: 234 SVKISHDAGTMASLLPAVSNTTTENVMYVKDMFFKMGKKSLVSWNVMIGVYMKNAMPVEA 293
Query: 204 LKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDL 263
++L+ M GF + ++ SVL ACG ++ + G+ +HGY R L PN++L+ ALID+
Sbjct: 294 VELYSRMEADGFEPDAVSITSVLPACGDTSALSLGKKIHGYIERKKLIPNLLLENALIDM 353
Query: 264 YSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISP 323
Y+KC +E A+ VF++M R++V W AMI + G+ + + LF+ L + + P
Sbjct: 354 YAKCGCLEKARDVFENMKSRDVVSWTAMISAYGFSGRGCDAVALFSKLQD-----SGLVP 408
Query: 324 DEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEI 383
D I F+ + AC A LL EGR F+ M D YKI P H CM +L A +EA
Sbjct: 409 DSIAFVTTLAACSHAGLLEEGRSCFKLMTDHYKITPRLEHLACMVDLLGRAGKVKEAYRF 468
Query: 384 LRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYA 443
++ M +M +W +LL CR + A + P+ Y L N+YA
Sbjct: 469 IQDM-----SMEPNERVWGALLGACRVHSDTDIGLLAADKLFQLAPEQSGYYVLLSNIYA 523
Query: 444 VAGQWEDVARVRELMKKRRMGRMPGCRLVDLKEVVEKLKVG 484
AG+WE+V +R +MK + + + PG V++ ++ VG
Sbjct: 524 KAGRWEEVTNIRNIMKSKGLKKNPGASNVEVNRIIHTFLVG 564
>gi|225451435|ref|XP_002273841.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g06540-like [Vitis vinifera]
Length = 474
Score = 255 bits (652), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 154/476 (32%), Positives = 243/476 (51%), Gaps = 46/476 (9%)
Query: 1 MKQLLQIQAHLITSGLFFNNSFWTINLLKHSA--DFGSPDYTVLVFKCINNPGTFCVNAV 58
M QL QI A +I S +N + LL A + G Y + +F P +F N +
Sbjct: 39 MHQLKQIHAQMIVSARIHDN-YAASRLLSFCALSESGDLSYALRLFNNTQEPNSFMWNTL 97
Query: 59 IKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGV 118
I+A+++S P + ++ Y+ M + +P +TF L +C+ ++ H LK G+
Sbjct: 98 IRAHASSLNPSEALLLYVDMRRLDVIPGKHTFPFLLKACSNFQSLQSCIQVHTHVLKFGL 157
Query: 119 DFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDI 178
D L V+N L+ Y S D+ A +FD
Sbjct: 158 DLNLHVVNGLVRAYSV-------------------------------SCDVRNARRVFDE 186
Query: 179 MPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEG 238
+ ER++ W MISGY+++ +L+LF +M+ G N T+ASVL+AC +S + G
Sbjct: 187 VSERSLSIWTTMISGYAQNYCSNEALELFDQMIVEGLEPNGATLASVLSACAQSGCLDLG 246
Query: 239 RSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIH 298
+H + ++ +IL TAL+ +Y+K + +AQ++FD++++RN WNAMI G +H
Sbjct: 247 ERIHVFMEEKGIEVGVILGTALVHMYAKNGAILMAQKLFDTISERNTATWNAMICGLAVH 306
Query: 299 GKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIK 358
G +E + F L I P++ITF+GV+ AC A LL+ GRK F M Y I+
Sbjct: 307 GHAKEALDRFWKL-----EKEQIVPNDITFVGVLSACCHAGLLSVGRKIFHLMKRVYGIE 361
Query: 359 PNFAHYWCMANLYA-GAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMV 417
P HY CM +L G EL EAEE+++ M D ++ +LL C+ G + +
Sbjct: 362 PKIEHYGCMVDLLGRGGELL-EAEELIKGMAWKAD-----VVILGALLGSCKNHGNIEIA 415
Query: 418 ERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVD 473
ER+ K + ++P + Y L N+YA AG+WEDV R+R++MK + + PG LVD
Sbjct: 416 ERVVKEILVLEPHNHGVYVVLSNMYAEAGRWEDVLRLRKVMKSGNLKKTPGWSLVD 471
>gi|224112267|ref|XP_002316137.1| predicted protein [Populus trichocarpa]
gi|222865177|gb|EEF02308.1| predicted protein [Populus trichocarpa]
Length = 601
Score = 255 bits (652), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 150/506 (29%), Positives = 256/506 (50%), Gaps = 48/506 (9%)
Query: 1 MKQLLQIQAHLITSGLFFNNSFWT--INLLKHSADFGSPDYTVLVFKCINNPGTFCVNAV 58
+K+L QIQA I + L + T IN + S DY +F+ I P N++
Sbjct: 39 LKELKQIQAFSIKTHLQNDLQILTKLINSCTQNPTTASMDYAHQLFEAIPQPDIVLFNSM 98
Query: 59 IKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGV 118
+ YS S P + + +++ + +P+ YTF SL +C ++G H LA+K G+
Sbjct: 99 FRGYSRSNAPLKAISLFIKALNYNLLPDDYTFPSLLKACVVAKAFQQGKQLHCLAIKLGL 158
Query: 119 DFELPVMNSLINMY-GCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFD 177
+ V +LINMY GC D+ A +FD
Sbjct: 159 NENPYVCPTLINMYAGC--------------------------------NDVDGAQRVFD 186
Query: 178 IMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNE 237
+ E VVS+N +I+GY++S P +L LFR++ + ND T+ SVL++C +
Sbjct: 187 EILEPCVVSYNAIITGYARSSRPNEALSLFRQLQARKLKPNDVTVLSVLSSCALLGALDL 246
Query: 238 GRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCI 297
G+ +H Y + L + ++TALID+Y+KC ++ A VF+SM+ R+ W+AMI+ + +
Sbjct: 247 GKWIHEYVKKNGLDKYVKVNTALIDMYAKCGSLDGAISVFESMSVRDTQAWSAMIVAYAM 306
Query: 298 HGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKI 357
HG+ ++ + +F + A + PDEITF+G++ AC L+ EG +YF M + Y I
Sbjct: 307 HGQGQDVMSMFEEM-----ARAKVQPDEITFLGLLYACSHTGLVDEGFRYFYSMSEVYGI 361
Query: 358 KPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMV 417
P HY CM +L A L EA + + ++P + I+W +LLS C G + +
Sbjct: 362 IPGIKHYGCMVDLLGRAGLLHEAYKFIDELP-----IKPTPILWRTLLSSCSSHGNLELA 416
Query: 418 ERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLKEV 477
+++ +++D Y L N+ A AG+WEDV +R+LM + ++PGC +++ V
Sbjct: 417 KQVMNQILELDDSHGGDYVILSNLCARAGKWEDVDTLRKLMIHKGAVKIPGCSSIEVDNV 476
Query: 478 VEKLKVG---HFWRGGMKEEVNKMME 500
V + G H+ + ++++++
Sbjct: 477 VHEFFSGDGVHYVSTALHRALDELVK 502
>gi|357466867|ref|XP_003603718.1| Pentatricopeptide repeat protein [Medicago truncatula]
gi|355492766|gb|AES73969.1| Pentatricopeptide repeat protein [Medicago truncatula]
Length = 629
Score = 255 bits (651), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 152/487 (31%), Positives = 257/487 (52%), Gaps = 19/487 (3%)
Query: 1 MKQLLQIQAHLITSGLF-FNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVI 59
MKQ QI AH I + L F+ I ++ G Y +F + NP F N++I
Sbjct: 37 MKQTKQIHAHAIANNLTRFSYISSRILAFFAASPRGDFRYAETLFTHMPNPNIFDYNSII 96
Query: 60 KAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVD 119
+Y+ + D+ + + +M+ PNS+TF +L SC +E+ L +K+G
Sbjct: 97 TSYTTNSQFDKSLSVFTKMLNMNIRPNSHTFTTLVKSCVTLSSLEQ---VFTLTMKSGNS 153
Query: 120 FELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIM 179
++ ++S+IN++ GA+ AR +F + S R+++ W S+VSG+ G ++ ++FD M
Sbjct: 154 SDVYFVSSVINVFSKHGAIHLARQVFDESSNRNVVCWTSLVSGYCSCGLVNEVRDVFDKM 213
Query: 180 PERNVVSWNIMISGYSKSGNPGCSLKLFREMMK-----SGFRGNDKTMASVLTACGRSAR 234
P+RN S + M+SGY ++ ++LFRE+ K + + N + SVL AC
Sbjct: 214 PQRNEASNSAMVSGYVRNSFFSEGVQLFRELKKKDKGRARVKFNGALLVSVLNACTVMGA 273
Query: 235 FNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILG 294
F EG+ +H Y L+ ++ L TALID Y+KC V+ A++VFD M +++ W+AMILG
Sbjct: 274 FEEGKWIHSYVEENGLEYDLELGTALIDFYAKCGWVKDAEKVFDKMLVKDVATWSAMILG 333
Query: 295 HCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDF 354
I+G + ++LF + P+E+TF+GV+ AC L E + F M +
Sbjct: 334 LAINGNNKMALELFEKM-----EKVGPKPNEVTFVGVLTACNHKSLFGESSRLFGIMSEK 388
Query: 355 YKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAV 414
Y I P+ HY C+ ++ A + ++A + M + D +W SLL+ C G
Sbjct: 389 YNITPSIEHYGCIVDILARSGQVKKALIFINSMHIEPDGA-----IWGSLLNGCLMHGHY 443
Query: 415 AMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDL 474
+ +++ K ++ DP+ RY L N+YA G+WE V+ VR+LMK R + + G +++
Sbjct: 444 ELGQKVGKYLIEFDPEHSGRYVLLANMYANMGKWEGVSEVRKLMKDRGVVIVYGWSFIEI 503
Query: 475 KEVVEKL 481
+ + K
Sbjct: 504 DQTLHKF 510
>gi|449464596|ref|XP_004150015.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Cucumis sativus]
gi|449529868|ref|XP_004171920.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Cucumis sativus]
Length = 734
Score = 255 bits (651), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 147/445 (33%), Positives = 231/445 (51%), Gaps = 42/445 (9%)
Query: 56 NAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALK 115
NA+I Y+ + ++ + M K PN T VS+ +CA++ ++ G
Sbjct: 230 NAMIAGYAQMGRSKEALLLFEDMRKANVPPNESTIVSVLSACAQSNALDLGNSMRSWIED 289
Query: 116 NGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHEL 175
G+ L ++N+LI+MY + GD+ A EL
Sbjct: 290 RGLCSNLKLVNALIDMYS-------------------------------KCGDLQTAREL 318
Query: 176 FDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARF 235
FD M ER+V+SWN+MI GY+ + +L LFREM+ SG + T S+L +C
Sbjct: 319 FDDMLERDVISWNVMIGGYTHMCSYKEALALFREMLASGVEPTEITFLSILPSCAHLGAI 378
Query: 236 NEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGH 295
+ G+ +H Y + + L T+LIDLY+KC + A++VFD M ++L WNAMI G
Sbjct: 379 DLGKWIHAYINKNFNSVSTSLSTSLIDLYAKCGNIVAARQVFDGMKIKSLASWNAMICGL 438
Query: 296 CIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFY 355
+HG+ ++ +LF+ + + I P+EITF+G++ AC A L+ G+++F M+ Y
Sbjct: 439 AMHGQADKAFELFSKM-----SSDGIEPNEITFVGILSACKHAGLVDLGQQFFSSMVQDY 493
Query: 356 KIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVA 415
KI P HY CM +L A L EEAE +L+ M D +W SLL CR G V
Sbjct: 494 KISPKSQHYGCMIDLLGRAGLFEEAESLLQNMEVKPDGA-----IWGSLLGACRDHGRVE 548
Query: 416 MVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLK 475
+ E +A+ +++P + Y L N+YA AG+W+DVAR+R + R M ++PGC +++
Sbjct: 549 LGELVAERLFELEPDNPGAYVLLSNIYAGAGKWDDVARIRTRLNDRGMKKVPGCTTIEVD 608
Query: 476 EVVEKLKVGHFWRGGMKEEVNKMME 500
VV + VG E++ +M+E
Sbjct: 609 NVVHEFLVGDKVH-PQSEDIYRMLE 632
Score = 227 bits (579), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 159/507 (31%), Positives = 253/507 (49%), Gaps = 46/507 (9%)
Query: 1 MKQLLQIQAHLITSGLFFNNSFWTINLLKHSADFGSPD--YTVLVFKCINNPGTFCVNAV 58
++ QI AH+I +GL N F L++ SA S D Y + +F I P F N++
Sbjct: 42 IRTFKQIHAHIIKTGLH-NTLFALSKLIEFSAVSRSGDISYAISLFNSIEEPNLFIWNSM 100
Query: 59 IKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGV 118
I+ S S P +VF+++MI +G PNSYTF L SCAK G H LK G
Sbjct: 101 IRGLSMSLSPALALVFFVRMIYSGVEPNSYTFPFLLKSCAKLASAHEGKQIHAHVLKLGF 160
Query: 119 DFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDI 178
++ + SLINMY G M+ A+ +F Q + RD IS+ ++++G+ G M A +LFD
Sbjct: 161 VSDVFIHTSLINMYAQSGEMNNAQLVFDQSNFRDAISFTALIAGYALWGYMDRARQLFDE 220
Query: 179 MPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEG 238
MP ++VVSWN MI+GY++ G +L LF +M K+ N+ T+ SVL+AC +S + G
Sbjct: 221 MPVKDVVSWNAMIAGYAQMGRSKEALLLFEDMRKANVPPNESTIVSVLSACAQSNALDLG 280
Query: 239 RSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIH 298
S+ + L N+ L ALID+YSKC ++ A+ +FD M +R+++ WN MI G+
Sbjct: 281 NSMRSWIEDRGLCSNLKLVNALIDMYSKCGDLQTARELFDDMLERDVISWNVMIGGYTHM 340
Query: 299 GKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGR-------KYF--- 348
+E + LF ++ + P EITF+ ++ +C + G+ K F
Sbjct: 341 CSYKEALALFREML-----ASGVEPTEITFLSILPSCAHLGAIDLGKWIHAYINKNFNSV 395
Query: 349 ---------------------RQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKM 387
RQ+ D KIK + A + M A ++A E+ KM
Sbjct: 396 STSLSTSLIDLYAKCGNIVAARQVFDGMKIK-SLASWNAMICGLAMHGQADKAFELFSKM 454
Query: 388 PEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVD---MDPQDFSRYQFLLNVYAV 444
+D + I +V +LS C+ G V + ++ S V + P+ Y ++++
Sbjct: 455 --SSDGIEPNEITFVGILSACKHAGLVDLGQQFFSSMVQDYKISPKS-QHYGCMIDLLGR 511
Query: 445 AGQWEDVARVRELMKKRRMGRMPGCRL 471
AG +E+ + + M+ + G + G L
Sbjct: 512 AGLFEEAESLLQNMEVKPDGAIWGSLL 538
>gi|225425668|ref|XP_002269694.1| PREDICTED: pentatricopeptide repeat-containing protein At2g02980
[Vitis vinifera]
gi|296086362|emb|CBI31951.3| unnamed protein product [Vitis vinifera]
Length = 595
Score = 255 bits (651), Expect = 5e-65, Method: Compositional matrix adjust.
Identities = 156/486 (32%), Positives = 240/486 (49%), Gaps = 43/486 (8%)
Query: 1 MKQLLQIQAHLITSGLFFNNSFWT--INLLKHSADFGSPDYTVLVFKCINNPGTFCVNAV 58
+++L Q+QA I + L + S T IN + S + +F I P N +
Sbjct: 33 LRELKQLQAFAIKTHLHSDLSVLTKFINFCSLNPTTTSMQHAHHLFDQIPQPDIVLFNTM 92
Query: 59 IKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGV 118
+ Y+ + P + + Q++ +G P+ YTF SL +CA +E G H LA+K G+
Sbjct: 93 ARGYARTDTPLRAFTLFTQILFSGLFPDDYTFPSLLKACASCKALEEGRQLHCLAIKLGL 152
Query: 119 DFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDI 178
+ V +LINMY MDCAR +FD
Sbjct: 153 SENVYVCPTLINMYTACNEMDCAR-------------------------------RVFDK 181
Query: 179 MPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEG 238
+ E VV++N MI+GY++ P +L LFRE+ + D TM SVL++C + G
Sbjct: 182 IWEPCVVTYNAMITGYARGSRPNEALSLFRELQARNLKPTDVTMLSVLSSCALLGALDLG 241
Query: 239 RSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIH 298
+ +H Y + + +DTALID+Y+KC ++ A VF++MA R+ W+AMI+ + IH
Sbjct: 242 KWMHEYVKKNGFNRFVKVDTALIDMYAKCGSLDDAVCVFENMAVRDTQAWSAMIMAYAIH 301
Query: 299 GKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIK 358
G + + LF + PDEITF+G++ AC L+ EG +YF M D Y +
Sbjct: 302 GHGLKAVSLFKEMRK-----AGTEPDEITFLGLLYACSHTGLVEEGFEYFYGMRDKYGVI 356
Query: 359 PNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVE 418
P HY CM +L A EEA E + +P + I+W +LLS C G V + +
Sbjct: 357 PGIKHYGCMVDLLGRAGRLEEAYEFIVGLP-----IRPTPILWRTLLSACGSHGNVELGK 411
Query: 419 RLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLKEVV 478
R+ + ++D Y L N+ A AG+WEDV VR+LM +R + ++PGC V++ VV
Sbjct: 412 RVIEQIFELDDSHGGDYIILSNLCARAGRWEDVNYVRKLMNERGVVKIPGCSSVEVNNVV 471
Query: 479 EKLKVG 484
+ G
Sbjct: 472 HEFFSG 477
>gi|356522333|ref|XP_003529801.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g15930-like [Glycine max]
Length = 650
Score = 255 bits (651), Expect = 5e-65, Method: Compositional matrix adjust.
Identities = 162/531 (30%), Positives = 252/531 (47%), Gaps = 64/531 (12%)
Query: 1 MKQLLQIQAHLITSGL----FFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVN 56
M QL QI +H I GL F N S G+ +Y VF I +P F N
Sbjct: 20 MYQLKQIHSHTIKMGLSSDPLFRNRVIAFCCAHES---GNMNYAHQVFDTIPHPSMFIWN 76
Query: 57 AVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKN 116
+IK YS P+ GV YL M+ + P+ +TF + ++ G A+K+
Sbjct: 77 TMIKGYSKISHPENGVSMYLLMLTSNIKPDRFTFPFSLKGFTRDMALQHGKELLNHAVKH 136
Query: 117 GVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVR----------- 165
G D L V + I+M+ G +D A +F ++++WN ++SG+ R
Sbjct: 137 GFDSNLFVQKAFIHMFSLCGIVDLAHKVFDMGDACEVVTWNIMLSGYNRVKQFKISKMLL 196
Query: 166 --------------------------------SGDMSAAHELFDIMPERNVVSWNIMISG 193
G+M A +FD M R+VVSW MI G
Sbjct: 197 VLSACSKLKDLEWGKHIFKYINGGIVEHMFAACGEMDEAQGVFDNMKTRDVVSWTAMIDG 256
Query: 194 YSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPN 253
Y + + +L LFREM S + ++ TM S+L AC G V + S K +
Sbjct: 257 YLRMNHFIGALALFREMQMSNVKPDEFTMVSILIACALLGALELGEWVKTCIDKNSNKND 316
Query: 254 IILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVN 313
+ AL+D+Y KC V A++VF M ++ W MI+G I+G EE + +F+ ++
Sbjct: 317 SFVGNALVDMYFKCGNVRKAKKVFKEMYQKDKFTWTTMIVGLAINGHGEEALAMFSNMIE 376
Query: 314 GTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAG 373
S++PDEIT+IGV+CAC ++ +G+ +F M + IKP HY CM +L
Sbjct: 377 -----ASVTPDEITYIGVLCAC----MVDKGKSFFTNMTMQHGIKPTVTHYGCMVDLLGC 427
Query: 374 AELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFS 433
EEA E++ MP + SI+W S L CR V + + AK ++++P++ +
Sbjct: 428 VGCLEEALEVIVNMPVKPN-----SIVWGSPLGACRVHKNVQLADMAAKQILELEPENGA 482
Query: 434 RYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLKEVVEKLKVG 484
Y L N+YA + +WE++ +VR+LM +R + + PGC L++L V + G
Sbjct: 483 VYVLLCNIYAASKKWENLCQVRKLMMERGIKKTPGCSLMELNGNVYEFVAG 533
>gi|357113684|ref|XP_003558631.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g22070-like [Brachypodium distachyon]
Length = 802
Score = 255 bits (651), Expect = 5e-65, Method: Compositional matrix adjust.
Identities = 140/441 (31%), Positives = 243/441 (55%), Gaps = 14/441 (3%)
Query: 32 ADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFM-PNSYTF 90
A G D + +F+ + + NAVI Y+ + + + + F+ +M+ M P+ +T
Sbjct: 239 AHLGRMDLALSLFENMPDRTIVSWNAVIAGYNQNGLNAKALWFFSRMLSYSTMAPDEFTI 298
Query: 91 VSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQ--M 148
S+ +CA G V G H L++ + + V N+LI+MY G+++ AR + Q M
Sbjct: 299 TSVLSACANLGMVSIGKQVHAYILRSRMPYIGQVTNALISMYAKSGSVENARGVMQQAVM 358
Query: 149 SPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFR 208
+ ++IS+ +++ G+V+ GDM A E+FD+M R+VV+W MI GY ++G+ +++LFR
Sbjct: 359 ADLNVISFTALLEGYVKLGDMKHAREMFDVMSNRDVVAWTAMIVGYEQNGHNDEAMELFR 418
Query: 209 EMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQ 268
M++SG N T+A+VL+ C A G+ +H +R+ + + + +++ +Y++
Sbjct: 419 LMIRSGPEPNSYTVAAVLSVCASLACLEYGKQIHCKAIRSLQEQSSSVSNSIVTMYARSG 478
Query: 269 KVEVAQRVFDSMADRN-LVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEIT 327
+ A+RVFD + R V W +MI+ HG E+ + LF ++ + PD IT
Sbjct: 479 SLPWARRVFDRVHWRKETVTWTSMIVALAQHGLGEDAVGLFEEMLR-----VGVKPDRIT 533
Query: 328 FIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKM 387
F+GV+ AC + EG++YF+Q+ D + I P +HY CM +L A A L EA+E +++M
Sbjct: 534 FVGVLSACTHVGFVDEGKRYFQQLQDKHGIVPEMSHYACMVDLLARAGLFSEAQEFIQQM 593
Query: 388 PEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQ 447
P + D +I W SLLS CR + E A+ + +DP + Y L NVY+ G+
Sbjct: 594 PVEPD-----AIAWGSLLSACRVHKNADLAELAAEKLLSIDPGNSGAYSALSNVYSACGR 648
Query: 448 WEDVARVRELMKKRRMGRMPG 468
W D A++ + K + + + G
Sbjct: 649 WNDAAKIWKRRKDKSVKKETG 669
Score = 152 bits (383), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 91/311 (29%), Positives = 151/311 (48%), Gaps = 39/311 (12%)
Query: 70 QGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLI 129
+ + +L M+ +G P +T ++ SCA T G H +K G+ +PV NS++
Sbjct: 145 EAIKMFLDMVTDGLSPTQFTLTNVLSSCAATEARGVGRKVHSFVVKLGLSSCVPVANSVL 204
Query: 130 NMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNI 189
NMYG G + AR +F +M R + SWN++VS G M A LF+ MP+R +VSWN
Sbjct: 205 NMYGKCGDAETARAVFERMPERSVSSWNAMVSLDAHLGRMDLALSLFENMPDRTIVSWNA 264
Query: 190 MISGYSKSGNPGCSLKLFREMMKSGFRGNDK-TMASVLTACGRSARFNEGRSVHGYTVRT 248
+I+GY+++G +L F M+ D+ T+ SVL+AC + G+ VH Y +R+
Sbjct: 265 VIAGYNQNGLNAKALWFFSRMLSYSTMAPDEFTITSVLSACANLGMVSIGKQVHAYILRS 324
Query: 249 SL---------------------------------KPNIILDTALIDLYSKCQKVEVAQR 275
+ N+I TAL++ Y K ++ A+
Sbjct: 325 RMPYIGQVTNALISMYAKSGSVENARGVMQQAVMADLNVISFTALLEGYVKLGDMKHARE 384
Query: 276 VFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICAC 335
+FD M++R++V W AMI+G+ +G +E ++LF ++ P+ T V+ C
Sbjct: 385 MFDVMSNRDVVAWTAMIVGYEQNGHNDEAMELFRLMIR-----SGPEPNSYTVAAVLSVC 439
Query: 336 VRAELLTEGRK 346
L G++
Sbjct: 440 ASLACLEYGKQ 450
Score = 120 bits (301), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 84/347 (24%), Positives = 164/347 (47%), Gaps = 44/347 (12%)
Query: 93 LFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDC-----ARNMF-- 145
L C G H A+K G+ + N+L++ Y A AR +F
Sbjct: 29 LLQRCQTAANPGAGRAIHARAVKAGLLASAYLCNNLLSYYAGPAAGGGGGFREARRLFDE 88
Query: 146 VQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLK 205
+ + R++ +WNS++S + +SG ++ A +F MPER+ VSW +M+ G ++ G G ++K
Sbjct: 89 IPAAQRNVFTWNSLLSLYAKSGRLADARAVFAEMPERDPVSWTVMVVGLNRVGRFGEAIK 148
Query: 206 LFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYS 265
+F +M+ G T+ +VL++C + GR VH + V+ L + + +++++Y
Sbjct: 149 MFLDMVTDGLSPTQFTLTNVLSSCAATEARGVGRKVHSFVVKLGLSSCVPVANSVLNMYG 208
Query: 266 KCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALV-------NGTVAG 318
KC E A+ VF+ M +R++ WNAM+ G+ + + LF + N +AG
Sbjct: 209 KCGDAETARAVFERMPERSVSSWNAMVSLDAHLGRMDLALSLFENMPDRTIVSWNAVIAG 268
Query: 319 --------------------GSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIK 358
+++PDE T V+ AC +++ G++ + Y ++
Sbjct: 269 YNQNGLNAKALWFFSRMLSYSTMAPDEFTITSVLSACANLGMVSIGKQ-----VHAYILR 323
Query: 359 PNFAHYWCMAN----LYAGAELTEEAEEILRK-MPEDNDNMSFESIM 400
+ + N +YA + E A ++++ + D + +SF +++
Sbjct: 324 SRMPYIGQVTNALISMYAKSGSVENARGVMQQAVMADLNVISFTALL 370
Score = 81.6 bits (200), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 61/274 (22%), Positives = 112/274 (40%), Gaps = 32/274 (11%)
Query: 27 LLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPN 86
LL+ G + +F ++N A+I Y + D+ + + MI++G PN
Sbjct: 369 LLEGYVKLGDMKHAREMFDVMSNRDVVAWTAMIVGYEQNGHNDEAMELFRLMIRSGPEPN 428
Query: 87 SYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFV 146
SYT ++ CA C+E G H A+++ + V NS++ MY G++ AR +F
Sbjct: 429 SYTVAAVLSVCASLACLEYGKQIHCKAIRSLQEQSSSVSNSIVTMYARSGSLPWARRVF- 487
Query: 147 QMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKL 206
D + W + V+W MI ++ G ++ L
Sbjct: 488 -----DRVHW------------------------RKETVTWTSMIVALAQHGLGEDAVGL 518
Query: 207 FREMMKSGFRGNDKTMASVLTACGRSARFNEG-RSVHGYTVRTSLKPNIILDTALIDLYS 265
F EM++ G + + T VL+AC +EG R + + P + ++DL +
Sbjct: 519 FEEMLRVGVKPDRITFVGVLSACTHVGFVDEGKRYFQQLQDKHGIVPEMSHYACMVDLLA 578
Query: 266 KCQKVEVAQRVFDSM-ADRNLVCWNAMILGHCIH 298
+ AQ M + + + W +++ +H
Sbjct: 579 RAGLFSEAQEFIQQMPVEPDAIAWGSLLSACRVH 612
Score = 52.4 bits (124), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 47/209 (22%), Positives = 79/209 (37%), Gaps = 52/209 (24%)
Query: 223 ASVLTACGRSARFNEGRSVHGYTVRTSL-------------------------------- 250
A +L C +A GR++H V+ L
Sbjct: 27 ARLLQRCQTAANPGAGRAIHARAVKAGLLASAYLCNNLLSYYAGPAAGGGGGFREARRLF 86
Query: 251 ------KPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEG 304
+ N+ +L+ LY+K ++ A+ VF M +R+ V W M++G G+ E
Sbjct: 87 DEIPAAQRNVFTWNSLLSLYAKSGRLADARAVFAEMPERDPVSWTVMVVGLNRVGRFGEA 146
Query: 305 IKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHY 364
IK+F +V +SP + T V+ +C E GRK + + +K +
Sbjct: 147 IKMFLDMVT-----DGLSPTQFTLTNVLSSCAATEARGVGRK-----VHSFVVKLGLSSC 196
Query: 365 WCMA----NLYAGAELTEEAEEILRKMPE 389
+A N+Y E A + +MPE
Sbjct: 197 VPVANSVLNMYGKCGDAETARAVFERMPE 225
>gi|357146098|ref|XP_003573875.1| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
mitochondrial-like [Brachypodium distachyon]
Length = 652
Score = 254 bits (650), Expect = 5e-65, Method: Compositional matrix adjust.
Identities = 136/429 (31%), Positives = 233/429 (54%), Gaps = 11/429 (2%)
Query: 56 NAVIKAYSNSCVPDQGVVFYLQMIKNG-FMPNSYTFVSLFGSCAKTGCVERGGMCHGLAL 114
N +I Y VP + + + +M+ +G P+ T + + A+ +E G HG
Sbjct: 190 NTLIGGYVRRGVPREALEMFWRMVGDGAVTPDEVTMIGVVSGSAQLRDLELGRRLHGYVE 249
Query: 115 KNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHE 174
+GV + +MN +++MY G ++ A+++F + + ++SW +++ G+ + G M A +
Sbjct: 250 SHGVRCTVRLMNVVMDMYIKCGDLERAKSVFEGIDKKTIVSWTTMIVGYAQFGLMDDARK 309
Query: 175 LFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSAR 234
+FD MPER+V WN +++GY + +L+LF +M ++ +D TM ++L+AC +
Sbjct: 310 VFDEMPERDVFPWNALMTGYVQCKRGKEALRLFHDMQEAMVEPDDITMVNLLSACSQLGA 369
Query: 235 FNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILG 294
G VH Y R + +++L T L+D+YSKC +E A RVF + ++N + W AMI G
Sbjct: 370 LEMGMWVHHYIDRRRVSLSVMLGTNLVDMYSKCGNIEKAIRVFKEIPEKNALTWTAMISG 429
Query: 295 HCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDF 354
HG + IK F ++ + PDEITFIGV+ AC A L+ EG+++F M+
Sbjct: 430 LANHGHADVAIKYFQRMIE-----LGLQPDEITFIGVLSACCHAGLVKEGQEFFSLMVSK 484
Query: 355 YKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAV 414
Y ++ HY CM +L A +EAE ++ MP + D +++W +L CR G +
Sbjct: 485 YHLERKMKHYSCMVDLLGRAGYLDEAEHLVNTMPMEPD-----AVVWGALFFACRMHGNI 539
Query: 415 AMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDL 474
+ E+ A V++DP D Y L N+YA A + +VR +M+ + ++PGC ++L
Sbjct: 540 TLGEKAAMKLVELDPGDSGIYVLLANMYAEANMRKKADKVRVMMRHLGVEKVPGCSCIEL 599
Query: 475 KEVVEKLKV 483
VV + V
Sbjct: 600 NGVVHEFIV 608
Score = 106 bits (264), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 103/446 (23%), Positives = 187/446 (41%), Gaps = 82/446 (18%)
Query: 3 QLLQIQAHLITSGLFFNNSFWT-----INLLKHSAD-FGSPDYTVLVFKCINNPGT---- 52
+LLQ+ AHL+T+GL + S + + L HS D SP + + + T
Sbjct: 23 RLLQLHAHLLTAGLMSSRSPFPLASRLVEALAHSDDPRHSPRPLLHALALLASLPTPPDS 82
Query: 53 -FCVNAVIKAYSNSCVPDQGVV-----FYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERG 106
NA ++A S D+G+V Y ++++ P+ TF L +CA+ G
Sbjct: 83 ASPYNAALRALS--LCTDRGLVTRCLPLYCSLLRSA-RPDHLTFPFLLKACARLQERNYG 139
Query: 107 GMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRS 166
G L G ++ V+N+ ++ +M AR +F RDL+SWN+++ G+VR
Sbjct: 140 NAVLGNVLSLGFHADVFVVNAAMHFLAVCSSMAEARKLFDGSHVRDLVSWNTLIGGYVRR 199
Query: 167 GDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVL 226
G A E+F W ++ G ++ TM V+
Sbjct: 200 GVPREALEMF----------WRMVGDG--------------------AVTPDEVTMIGVV 229
Query: 227 TACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLV 286
+ + GR +HGY ++ + L ++D+Y KC +E A+ VF+ + + +V
Sbjct: 230 SGSAQLRDLELGRRLHGYVESHGVRCTVRLMNVVMDMYIKCGDLERAKSVFEGIDKKTIV 289
Query: 287 CWNAMILGHCIHG-----------KPEEGIKLFTALVNGTV---------------AGGS 320
W MI+G+ G PE + + AL+ G V
Sbjct: 290 SWTTMIVGYAQFGLMDDARKVFDEMPERDVFPWNALMTGYVQCKRGKEALRLFHDMQEAM 349
Query: 321 ISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEA 380
+ PD+IT + ++ AC + L G + ID ++ + + ++Y+ E+A
Sbjct: 350 VEPDDITMVNLLSACSQLGALEMG-MWVHHYIDRRRVSLSVMLGTNLVDMYSKCGNIEKA 408
Query: 381 EEILRKMPEDNDNMSFESIMWVSLLS 406
+ +++PE N ++ W +++S
Sbjct: 409 IRVFKEIPEKN------ALTWTAMIS 428
Score = 47.4 bits (111), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 37/163 (22%), Positives = 78/163 (47%), Gaps = 10/163 (6%)
Query: 26 NLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMP 85
NL+ + G+ + + VFK I A+I +N D + ++ +MI+ G P
Sbjct: 394 NLVDMYSKCGNIEKAIRVFKEIPEKNALTWTAMISGLANHGHADVAIKYFQRMIELGLQP 453
Query: 86 NSYTFVSLFGSCAKTGCVERGGMCHGLAL-KNGVDFELPVMNSLINMYGCFGAMDCARNM 144
+ TF+ + +C G V+ G L + K ++ ++ + ++++ G G +D A ++
Sbjct: 454 DEITFIGVLSACCHAGLVKEGQEFFSLMVSKYHLERKMKHYSCMVDLLGRAGYLDEAEHL 513
Query: 145 F--VQMSPRDLISWNSI-----VSGHVRSGDMSAAHELFDIMP 180
+ M P D + W ++ + G++ G+ AA +L ++ P
Sbjct: 514 VNTMPMEP-DAVVWGALFFACRMHGNITLGE-KAAMKLVELDP 554
>gi|297844988|ref|XP_002890375.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297336217|gb|EFH66634.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 760
Score = 254 bits (650), Expect = 5e-65, Method: Compositional matrix adjust.
Identities = 139/436 (31%), Positives = 239/436 (54%), Gaps = 14/436 (3%)
Query: 50 PGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMC 109
P N ++ ++ S + V+ + +M GF P+ T S+ S + + G
Sbjct: 215 PNIVSWNGILSGFNRSGYHKEAVIMFQKMHHLGFCPDQVTVSSVLPSVGDSENLNMGRQI 274
Query: 110 HGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDM 169
HG +K G+ + V++++++MYG G + +F + + N+ ++G R+G +
Sbjct: 275 HGYVIKQGLLKDKCVISAMLDMYGKSGHVYGIIKLFDEFEMMETGVCNAYITGLSRNGLV 334
Query: 170 SAAHELFDIMPER----NVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASV 225
A E+F + E+ NVVSW +I+G +++G +L+LFREM +G + N T+ S+
Sbjct: 335 DKALEMFGLFKEQKMELNVVSWTSIIAGCAQNGKDIEALELFREMQVAGVKPNRVTIPSM 394
Query: 226 LTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNL 285
L ACG A GRS HG+ VR L ++ + +ALID+Y+KC +++++Q VF+ M +NL
Sbjct: 395 LPACGNIAALGHGRSTHGFAVRVHLLDDVHVGSALIDMYAKCGRIKMSQIVFNMMPTKNL 454
Query: 286 VCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGR 345
VCWN+++ G+ +HGK +E + +F +L+ + PD I+F ++ AC + L EG
Sbjct: 455 VCWNSLMNGYSMHGKAKEVMSIFESLMR-----TRLKPDFISFTSLLSACGQVGLTDEGW 509
Query: 346 KYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLL 405
KYF M + Y IKP HY CM NL A +EA ++++++P + D S +W +LL
Sbjct: 510 KYFNMMSEEYGIKPRLEHYSCMVNLLGRAGKLQEAYDLIKEIPFEPD-----SCVWGALL 564
Query: 406 SLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGR 465
+ CR Q V + E A+ ++P++ Y + N+YA G W +V +R M+ + +
Sbjct: 565 NSCRLQNNVDLAEIAAQKLFHLEPENPGTYVLMSNIYAAKGMWTEVDSIRNKMESLGLKK 624
Query: 466 MPGCRLVDLKEVVEKL 481
PGC + +K V L
Sbjct: 625 NPGCSWIQVKNKVYTL 640
Score = 142 bits (359), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 91/359 (25%), Positives = 182/359 (50%), Gaps = 11/359 (3%)
Query: 6 QIQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSNS 65
Q A ++ SG N+ + + L+ +++ + L+ + I +P + +++I A + +
Sbjct: 36 QAHARILKSGAQ-NDGYISAKLIASYSNYNCFNDADLILQSIPDPTVYSFSSLIYALTKA 94
Query: 66 CVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVM 125
+ Q + + +M +G +P+++ +LF CA+ + G H +A +G+D + V
Sbjct: 95 KLFSQSIGVFSRMFSHGLIPDTHVLPNLFKVCAELSAFKAGKQIHCVACVSGLDMDAFVQ 154
Query: 126 NSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMP----E 181
SL +MY G M AR +F +MS +D+++ ++++ G+ R G + + M E
Sbjct: 155 GSLFHMYMRCGRMGDARKVFDRMSEKDVVTCSALLCGYARKGCLEEVVRILSEMEKSGIE 214
Query: 182 RNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSV 241
N+VSWN ++SG+++SG ++ +F++M GF + T++SVL + G S N GR +
Sbjct: 215 PNIVSWNGILSGFNRSGYHKEAVIMFQKMHHLGFCPDQVTVSSVLPSVGDSENLNMGRQI 274
Query: 242 HGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKP 301
HGY ++ L + + +A++D+Y K V ++FD NA I G +G
Sbjct: 275 HGYVIKQGLLKDKCVISAMLDMYGKSGHVYGIIKLFDEFEMMETGVCNAYITGLSRNGLV 334
Query: 302 EEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPN 360
++ +++F G + + +++ +I C + E + FR+M +KPN
Sbjct: 335 DKALEMF-----GLFKEQKMELNVVSWTSIIAGCAQNGKDIEALELFREM-QVAGVKPN 387
>gi|147769957|emb|CAN70049.1| hypothetical protein VITISV_013371 [Vitis vinifera]
Length = 476
Score = 254 bits (650), Expect = 6e-65, Method: Compositional matrix adjust.
Identities = 154/476 (32%), Positives = 242/476 (50%), Gaps = 46/476 (9%)
Query: 1 MKQLLQIQAHLITSGLFFNNSFWTINLLKHSA--DFGSPDYTVLVFKCINNPGTFCVNAV 58
M QL QI A +I S +N + LL A + G Y + +F P +F N +
Sbjct: 41 MHQLKQIHAQMIVSARIHDN-YAASRLLSFCALSESGDLSYALRLFNNTQEPNSFMWNTL 99
Query: 59 IKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGV 118
I+A+++S P + ++ Y+ M + +P +TF L +C+ ++ H LK G+
Sbjct: 100 IRAHASSLNPSEALLLYVDMRRLDVIPGKHTFPFLLKACSNFQSLQSCIQVHTHVLKFGL 159
Query: 119 DFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDI 178
D L V+N L+ Y S D+ A +FD
Sbjct: 160 DLNLHVVNGLVRAYSV-------------------------------SCDVRNARRVFDE 188
Query: 179 MPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEG 238
+ ER++ W MISGY+++ +L+LF +M+ G N T+ASVL+AC +S + G
Sbjct: 189 VSERSLSIWTTMISGYAQNYCSNEALELFDQMIVEGLEPNGATLASVLSACAQSGCLDLG 248
Query: 239 RSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIH 298
+H + ++ +IL TAL+ +Y+K + +AQ++FD +++RN WNAMI G +H
Sbjct: 249 ERIHVFMEEKGIEVGVILGTALVHMYAKNGAILMAQKLFDXISERNTATWNAMICGLAVH 308
Query: 299 GKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIK 358
G +E + F L I P++ITF+GV+ AC A LL+ GRK F M Y I+
Sbjct: 309 GHAKEALDRFWKL-----EKEQIVPNDITFVGVLSACCHAGLLSVGRKIFHLMKRVYGIE 363
Query: 359 PNFAHYWCMANLYA-GAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMV 417
P HY CM +L G EL EAEE+++ M D ++ +LL C+ G + +
Sbjct: 364 PKIEHYGCMVDLLGRGGELL-EAEELIKGMAWKAD-----VVILGALLGSCKNHGNIEIA 417
Query: 418 ERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVD 473
ER+ K + ++P + Y L N+YA AG+WEDV R+R++MK + + PG LVD
Sbjct: 418 ERVVKEILVLEPHNHGVYVVLSNMYAEAGRWEDVLRLRKVMKSGNLKKTPGWSLVD 473
>gi|449469438|ref|XP_004152427.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Cucumis sativus]
Length = 528
Score = 254 bits (650), Expect = 6e-65, Method: Compositional matrix adjust.
Identities = 155/496 (31%), Positives = 262/496 (52%), Gaps = 26/496 (5%)
Query: 1 MKQLLQIQAHLITSGLFFNNSFWTIN-LLKHSADFGSP-----DYTVLVFKCINNPGTFC 54
++ L QI AHL+ + + + S + I LL+ +A G Y +FK + F
Sbjct: 20 VQHLKQIHAHLLKT--YLSQSPYAIAPLLEVAATSGCDRDSFFSYACGIFKNLQQRNIFM 77
Query: 55 VNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVER-----GGMC 109
N++I+ Y S P Q ++ YL ++ GF+ N YTF L +CA V R G +
Sbjct: 78 YNSMIRGYFLSRFPKQAILCYLDLMDRGFLANKYTFPPLIKACA---LVYRELKRIGYLV 134
Query: 110 HGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDM 169
H + G + + V+++L+ Y F + AR +F + S +D++ W +V G+ + GD+
Sbjct: 135 HAHVIVLGYENDAFVVSALVEFYSLFD-LKVARVLFDKSSGKDVVVWTVMVDGYGKVGDI 193
Query: 170 SAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTAC 229
+A LFD MPERNV+SW+ M++ YS+ + L LFR+M K ND +ASVLTAC
Sbjct: 194 ESARVLFDEMPERNVISWSAMMAAYSRVSDFREVLCLFRQMQKKNIVPNDSVIASVLTAC 253
Query: 230 GRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWN 289
+G +H Y R L N IL TAL+D+YSKC +E A VF+ +++++ WN
Sbjct: 254 AHLGAITQGLWMHSYAKRYGLDSNPILATALVDMYSKCGYIESALEVFEGISNKDAGAWN 313
Query: 290 AMILGHCIHGKPEEGIKLFTALV-NGTVAGGSISPDEITFIGVICACVRAELLTEGRKYF 348
AMI G + G + ++LF ++ +GT A E TF+ ++ AC A+++ G ++F
Sbjct: 314 AMISGFAMTGNVVKSLELFDKMIASGTQA------TEATFVSILAACTHAKMVERGLEFF 367
Query: 349 RQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLC 408
QM Y+++P F HY C+ +L A A + E+AE+ + + N+ ++ +W ++LS C
Sbjct: 368 DQMYPVYRVQPQFEHYACVVDLMARAGMVEDAEKFVEEKMGGFSNV--DANVWGAILSAC 425
Query: 409 RFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPG 468
R + + +R+ + D N+++ AG+ VR+ + R ++PG
Sbjct: 426 RQYRNIEIGDRIWTKLSALGLLDGGTQVLSYNIFSEAGREMAAKEVRKKFSEARSKKIPG 485
Query: 469 CRLVDLKEVVEKLKVG 484
C ++ + V++ G
Sbjct: 486 CSVIVVDGAVQEFLAG 501
>gi|359490816|ref|XP_002271825.2| PREDICTED: pentatricopeptide repeat-containing protein
At2g13600-like [Vitis vinifera]
Length = 702
Score = 254 bits (650), Expect = 6e-65, Method: Compositional matrix adjust.
Identities = 131/433 (30%), Positives = 238/433 (54%), Gaps = 16/433 (3%)
Query: 52 TFCVNAVIKAYSNSCVPDQGVVFYLQMI-KNGFMPNSYTFVSLFGSCAKTGCVERGGMCH 110
T N++I Y+++ + D+ + + ++ + G +S+T S+ +CA + RG H
Sbjct: 241 TISWNSMISGYADNLLFDEALSMFRDLLMEEGIEADSFTLGSVLAACADMASLRRGKEVH 300
Query: 111 GLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMS 170
A+ G+ + V +L+ MY + A+ F ++ RD +WN ++SG+ +
Sbjct: 301 AQAVVRGLHWNTFVGGALVEMYSKCEDLKAAQLAFDGVTERDTATWNVLISGYACCNQLE 360
Query: 171 AAHELFDIMP----ERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVL 226
L M E NV +WN +ISG+ ++G+ +L+LF EM S R + T+ +L
Sbjct: 361 NIQNLIQKMKGDGFEPNVYTWNGIISGHVENGHNELALRLFTEMQTSSLRPDIYTVGIIL 420
Query: 227 TACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLV 286
AC R A G+ VH +++R + ++ + AL+D+Y+KC ++ A +V++ +++ NLV
Sbjct: 421 PACARLATIARGKQVHAHSIRQGYELDVHIGAALVDMYAKCGSIKHAMQVYNRISNPNLV 480
Query: 287 CWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRK 346
NAM+ + +HG +EGI LF ++ G PD +TF+ V+ +CV A + G +
Sbjct: 481 SQNAMLTAYAMHGHGDEGIALFRNML-----GNGFRPDHVTFLSVLSSCVHAGAVETGHE 535
Query: 347 YFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLS 406
+F ++ +Y + P+ HY C+ +L + A +EA E+++K+P D S+MW +LL
Sbjct: 536 FF-DLMTYYNVTPSLKHYTCIVDLLSRAGRLDEAYELVKKIPRKPD-----SVMWGALLG 589
Query: 407 LCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRM 466
C G V + E A+S ++++P + Y L N+YA AG+W D+ R R+++K R M +
Sbjct: 590 GCVIWGNVELGEIAAESLIELEPNNTGNYVLLANLYAYAGRWHDLDRTRQMIKDRGMHKS 649
Query: 467 PGCRLVDLKEVVE 479
PGC ++ +E +
Sbjct: 650 PGCSWIEDREDIH 662
Score = 132 bits (332), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 122/525 (23%), Positives = 215/525 (40%), Gaps = 100/525 (19%)
Query: 6 QIQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSNS 65
Q+ AH + +G F + F LL+ FG D LVF + + A++ + +
Sbjct: 80 QVHAHTLKTG-FHGHEFVETKLLQMYGRFGCLDDANLVFVKMPQRNLYSWTAILSVHVDH 138
Query: 66 CVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVM 125
++ + + ++ + + F + C +E G HG+ +K D
Sbjct: 139 GYFEEALSLFEKLQLDDIGLEFFVFPVVLKLCGGLRVLELGRQLHGVVIKRCAD------ 192
Query: 126 NSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMP--ERN 183
M A +F S ++++S+N+++ G+ +G++ A ELFD M ++
Sbjct: 193 ------------MGSALKIFSGFSVKNVVSYNTMIVGYCENGNVEKAKELFDQMELVGKD 240
Query: 184 VVSWNIMISGYSKSGNPGCSLKLFRE-MMKSGFRGNDKTMASVLTACGRSARFNEGRSVH 242
+SWN MISGY+ + +L +FR+ +M+ G + T+ SVL AC A G+ VH
Sbjct: 241 TISWNSMISGYADNLLFDEALSMFRDLLMEEGIEADSFTLGSVLAACADMASLRRGKEVH 300
Query: 243 GYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADR------------------- 283
V L N + AL+++YSKC+ ++ AQ FD + +R
Sbjct: 301 AQAVVRGLHWNTFVGGALVEMYSKCEDLKAAQLAFDGVTERDTATWNVLISGYACCNQLE 360
Query: 284 ----------------NLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEIT 327
N+ WN +I GH +G E ++LFT + S+ PD T
Sbjct: 361 NIQNLIQKMKGDGFEPNVYTWNGIISGHVENGHNELALRLFTEMQT-----SSLRPDIYT 415
Query: 328 FIGVICACVRAELLTEGRKY----FRQ-----------MIDFY----KIK---------- 358
++ AC R + G++ RQ ++D Y IK
Sbjct: 416 VGIILPACARLATIARGKQVHAHSIRQGYELDVHIGAALVDMYAKCGSIKHAMQVYNRIS 475
Query: 359 -PNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMV 417
PN M YA +E + R M + + + ++S+LS C GAV
Sbjct: 476 NPNLVSQNAMLTAYAMHGHGDEGIALFRNML--GNGFRPDHVTFLSVLSSCVHAGAVETG 533
Query: 418 ERLAK--SFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKK 460
++ ++ P Y ++++ + AG+ ++ EL+KK
Sbjct: 534 HEFFDLMTYYNVTPS-LKHYTCIVDLLSRAGRLDE---AYELVKK 574
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 61/222 (27%), Positives = 103/222 (46%), Gaps = 12/222 (5%)
Query: 6 QIQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSNS 65
Q+ AH I G + L+ A GS + + V+ I+NP NA++ AY+
Sbjct: 434 QVHAHSIRQGYELDVHIGAA-LVDMYAKCGSIKHAMQVYNRISNPNLVSQNAMLTAYAMH 492
Query: 66 CVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVM 125
D+G+ + M+ NGF P+ TF+S+ SC G VE G L V L
Sbjct: 493 GHGDEGIALFRNMLGNGFRPDHVTFLSVLSSCVHAGAVETGHEFFDLMTYYNVTPSLKHY 552
Query: 126 NSLINMYGCFGAMDCARNMFVQMSPR--DLISWNSIVSGHVRSGDMS----AAHELFDIM 179
++++ G +D A + V+ PR D + W +++ G V G++ AA L ++
Sbjct: 553 TCIVDLLSRAGRLDEAYEL-VKKIPRKPDSVMWGALLGGCVIWGNVELGEIAAESLIELE 611
Query: 180 PERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKT 221
P N ++ ++ + Y+ +G L R+M+K RG K+
Sbjct: 612 P-NNTGNYVLLANLYAYAGR-WHDLDRTRQMIKD--RGMHKS 649
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 49/94 (52%), Gaps = 3/94 (3%)
Query: 218 NDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVF 277
+ T AS+L +C N G+ VH +T++T + ++T L+ +Y + ++ A VF
Sbjct: 61 DSSTYASLLESC---RTLNLGKQVHAHTLKTGFHGHEFVETKLLQMYGRFGCLDDANLVF 117
Query: 278 DSMADRNLVCWNAMILGHCIHGKPEEGIKLFTAL 311
M RNL W A++ H HG EE + LF L
Sbjct: 118 VKMPQRNLYSWTAILSVHVDHGYFEEALSLFEKL 151
>gi|226529055|ref|NP_001142025.1| uncharacterized protein LOC100274179 [Zea mays]
gi|194706828|gb|ACF87498.1| unknown [Zea mays]
Length = 570
Score = 254 bits (649), Expect = 7e-65, Method: Compositional matrix adjust.
Identities = 146/478 (30%), Positives = 244/478 (51%), Gaps = 12/478 (2%)
Query: 7 IQAHLITSGLFFNNSFWTINLLKHS-ADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSNS 65
+ H + L F + N L HS A GS + F + N++I Y+ +
Sbjct: 65 LAVHGVALKLGFVGQVFVANALLHSYASAGSLGDSRRFFDEMAGRNVVSWNSMIGGYAQA 124
Query: 66 CVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVM 125
+ + +M + GF+ + +T SL +C++ G +E G + H L L +G +L +
Sbjct: 125 GDTREACALFGEMRRQGFLGDEFTLASLLLACSQEGNLEFGRLVHCLMLVSGSPVDLILG 184
Query: 126 NSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVV 185
+L++MY G + AR F M + ++SW S++ + G + AA FD MPERN V
Sbjct: 185 GALVDMYSKCGDLCMARRCFEMMPIKSVVSWTSMLCAQTKHGSVDAARCWFDHMPERNTV 244
Query: 186 SWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYT 245
SWN MIS Y + G +L L+++M G ++ T+ VL+ACGR G+ VH Y
Sbjct: 245 SWNTMISCYVQRGQYHEALDLYKQMQSHGPAPDEATLVPVLSACGRIGDLTVGKMVHLYI 304
Query: 246 VRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGI 305
P+I L +L+D+Y+KC +V+ A R+F M +RN+V WN +I G +HG+ + I
Sbjct: 305 RDNIHNPDISLINSLLDMYAKCGQVDTAIRLFREMCNRNVVSWNVIIGGLAMHGRALDAI 364
Query: 306 KLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYW 365
F ++V T SPD ITF+ ++ +C LL G+ YF M Y +K HY
Sbjct: 365 TFFRSMVRNT------SPDGITFVALLSSCSHGGLLETGQHYFESMRHVYNVKHEVEHYA 418
Query: 366 CMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFV 425
CM +L E+A ++++MP M + ++W +LL CR G V + +++ K +
Sbjct: 419 CMVDLLGRRGHLEKAVCLIKEMP-----MKPDVVVWGALLGACRIHGNVKIGKQVIKQLL 473
Query: 426 DMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLKEVVEKLKV 483
+++ + + N+ QWED+ R+R+LMK+R + G +++ + + V
Sbjct: 474 ELEGISGGLFVLISNLLYETNQWEDMKRLRKLMKERGTRKDMGVSSIEINNSIHEFGV 531
Score = 142 bits (357), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 99/378 (26%), Positives = 171/378 (45%), Gaps = 64/378 (16%)
Query: 43 VFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGC 102
+F I +P N + +AY NS P + + + M++ G +PN +T + +C +
Sbjct: 1 MFDGILDPDRVMYNTITRAYCNSDCPREALRLHRCMLRRGVLPNEFTLPFVVKACTRAQA 60
Query: 103 VERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSG 162
+ HG+ALK G ++ V N+L++ Y G++ +R F +M+ R+++SWNS++ G
Sbjct: 61 WDNALAVHGVALKLGFVGQVFVANALLHSYASAGSLGDSRRFFDEMAGRNVVSWNSMIGG 120
Query: 163 HVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTM 222
+ ++GD A C+ LF EM + GF G++ T+
Sbjct: 121 YAQAGDTREA-----------------------------CA--LFGEMRRQGFLGDEFTL 149
Query: 223 ASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMAD 282
AS+L AC + GR VH + + ++IL AL+D+YSKC + +A+R F+ M
Sbjct: 150 ASLLLACSQEGNLEFGRLVHCLMLVSGSPVDLILGGALVDMYSKCGDLCMARRCFEMMPI 209
Query: 283 RNLVCWNAMILGHCIHGK-----------PEEGIKLFTALVNGTVAGGSI---------- 321
+++V W +M+ HG PE + +++ V G
Sbjct: 210 KSVVSWTSMLCAQTKHGSVDAARCWFDHMPERNTVSWNTMISCYVQRGQYHEALDLYKQM 269
Query: 322 -----SPDEITFIGVICACVRAELLTEGRK---YFRQMIDFYKIKPNFAHYWCMANLYAG 373
+PDE T + V+ AC R LT G+ Y R I P+ + + ++YA
Sbjct: 270 QSHGPAPDEATLVPVLSACGRIGDLTVGKMVHLYIRDNIH----NPDISLINSLLDMYAK 325
Query: 374 AELTEEAEEILRKMPEDN 391
+ A + R+M N
Sbjct: 326 CGQVDTAIRLFREMCNRN 343
>gi|115455659|ref|NP_001051430.1| Os03g0775400 [Oryza sativa Japonica Group]
gi|24899461|gb|AAN65031.1| hypothetical protein [Oryza sativa Japonica Group]
gi|108711328|gb|ABF99123.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
gi|113549901|dbj|BAF13344.1| Os03g0775400 [Oryza sativa Japonica Group]
gi|215741536|dbj|BAG98031.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 804
Score = 254 bits (649), Expect = 7e-65, Method: Compositional matrix adjust.
Identities = 136/439 (30%), Positives = 236/439 (53%), Gaps = 14/439 (3%)
Query: 34 FGSPDYTVLVFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFM-PNSYTFVS 92
G D +F+ + + NA+I Y+ + + + + + +M+ M P+ +T S
Sbjct: 243 LGRMDLAESLFESMPDRSIVSWNAMIAGYNQNGLDAKALKLFSRMLHESSMAPDEFTITS 302
Query: 93 LFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRD 152
+ +CA G V G H L+ + + V N+LI+ Y G+++ AR + Q D
Sbjct: 303 VLSACANLGNVRIGKQVHAYILRTEMAYNSQVTNALISTYAKSGSVENARRIMDQSMETD 362
Query: 153 L--ISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREM 210
L IS+ +++ G+V+ GDM +A E+F +M R+VV+W MI GY ++G ++ LFR M
Sbjct: 363 LNVISFTALLEGYVKIGDMESAREMFGVMNNRDVVAWTAMIVGYEQNGRNDEAIDLFRSM 422
Query: 211 MKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKV 270
+ G N T+A+VL+ C A + G+ +H +R+ L+ + + A+I +Y++
Sbjct: 423 ITCGPEPNSYTLAAVLSVCASLACLDYGKQIHCRAIRSLLEQSSSVSNAIITMYARSGSF 482
Query: 271 EVAQRVFDSMADR-NLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFI 329
A+R+FD + R + W +MI+ HG+ EE + LF ++ + PD IT++
Sbjct: 483 PWARRMFDQVCWRKETITWTSMIVALAQHGQGEEAVGLFEEMLR-----AGVEPDRITYV 537
Query: 330 GVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPE 389
GV+ AC A + EG++Y+ Q+ + ++I P +HY CM +L A A L EA+E +R+MP
Sbjct: 538 GVLSACSHAGFVNEGKRYYDQIKNEHQIAPEMSHYACMVDLLARAGLFSEAQEFIRRMPV 597
Query: 390 DNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWE 449
+ D +I W SLLS CR + E A+ + +DP + Y + NVY+ G+W
Sbjct: 598 EPD-----AIAWGSLLSACRVHKNAELAELAAEKLLSIDPNNSGAYSAIANVYSACGRWS 652
Query: 450 DVARVRELMKKRRMGRMPG 468
D AR+ + K++ + + G
Sbjct: 653 DAARIWKARKEKAVRKETG 671
Score = 162 bits (411), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 97/311 (31%), Positives = 152/311 (48%), Gaps = 39/311 (12%)
Query: 70 QGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLI 129
+ + L M +GF P +T ++ SCA T G H +K G+ +PV NS++
Sbjct: 147 EAIKTLLDMTADGFTPTQFTLTNVLSSCAVTQAGAVGRKVHSFVVKLGLGSCVPVANSVL 206
Query: 130 NMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNI 189
NMYG G + A +F +M R + SWN++VS + G M A LF+ MP+R++VSWN
Sbjct: 207 NMYGKCGDSETATTVFERMPVRSVSSWNAMVSLNTHLGRMDLAESLFESMPDRSIVSWNA 266
Query: 190 MISGYSKSGNPGCSLKLFREMM-KSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRT 248
MI+GY+++G +LKLF M+ +S ++ T+ SVL+AC G+ VH Y +RT
Sbjct: 267 MIAGYNQNGLDAKALKLFSRMLHESSMAPDEFTITSVLSACANLGNVRIGKQVHAYILRT 326
Query: 249 SLKPNIILDTALIDLYSKCQKVEVAQRVFDS----------------------------- 279
+ N + ALI Y+K VE A+R+ D
Sbjct: 327 EMAYNSQVTNALISTYAKSGSVENARRIMDQSMETDLNVISFTALLEGYVKIGDMESARE 386
Query: 280 ----MADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICAC 335
M +R++V W AMI+G+ +G+ +E I LF +++ P+ T V+ C
Sbjct: 387 MFGVMNNRDVVAWTAMIVGYEQNGRNDEAIDLFRSMIT-----CGPEPNSYTLAAVLSVC 441
Query: 336 VRAELLTEGRK 346
L G++
Sbjct: 442 ASLACLDYGKQ 452
Score = 131 bits (329), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 90/353 (25%), Positives = 169/353 (47%), Gaps = 51/353 (14%)
Query: 90 FVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYG----CFGAMDCARNMF 145
+ L C G H A+K G+ + N+L++ YG G + AR +F
Sbjct: 29 YARLLQLCQTAANPGAGRAIHARAVKAGLLASAYLCNNLLSYYGETAGGAGGLRDARRLF 88
Query: 146 --VQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCS 203
+ ++ R++ +WNS++S +SG ++ A +F MPER+ VSW +M+ G +++G G +
Sbjct: 89 DEIPLARRNVFTWNSLLSMFAKSGRLADARGVFAEMPERDAVSWTVMVVGLNRAGRFGEA 148
Query: 204 LKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDL 263
+K +M GF T+ +VL++C + GR VH + V+ L + + +++++
Sbjct: 149 IKTLLDMTADGFTPTQFTLTNVLSSCAVTQAGAVGRKVHSFVVKLGLGSCVPVANSVLNM 208
Query: 264 YSKC-------------------------------QKVEVAQRVFDSMADRNLVCWNAMI 292
Y KC ++++A+ +F+SM DR++V WNAMI
Sbjct: 209 YGKCGDSETATTVFERMPVRSVSSWNAMVSLNTHLGRMDLAESLFESMPDRSIVSWNAMI 268
Query: 293 LGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMI 352
G+ +G + +KLF+ +++ + S++PDE T V+ AC G + +
Sbjct: 269 AGYNQNGLDAKALKLFSRMLHES----SMAPDEFTITSVLSACANL-----GNVRIGKQV 319
Query: 353 DFYKIKPNFAHYWCMAN----LYAGAELTEEAEEIL-RKMPEDNDNMSFESIM 400
Y ++ A+ + N YA + E A I+ + M D + +SF +++
Sbjct: 320 HAYILRTEMAYNSQVTNALISTYAKSGSVENARRIMDQSMETDLNVISFTALL 372
Score = 86.3 bits (212), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 62/278 (22%), Positives = 112/278 (40%), Gaps = 32/278 (11%)
Query: 27 LLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPN 86
LL+ G + +F +NN A+I Y + D+ + + MI G PN
Sbjct: 371 LLEGYVKIGDMESAREMFGVMNNRDVVAWTAMIVGYEQNGRNDEAIDLFRSMITCGPEPN 430
Query: 87 SYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFV 146
SYT ++ CA C++ G H A+++ ++ V N++I MY G+ AR MF
Sbjct: 431 SYTLAAVLSVCASLACLDYGKQIHCRAIRSLLEQSSSVSNAIITMYARSGSFPWARRMF- 489
Query: 147 QMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKL 206
D + W + ++W MI ++ G ++ L
Sbjct: 490 -----DQVCW------------------------RKETITWTSMIVALAQHGQGEEAVGL 520
Query: 207 FREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRT-SLKPNIILDTALIDLYS 265
F EM+++G + T VL+AC + NEG+ + + P + ++DL +
Sbjct: 521 FEEMLRAGVEPDRITYVGVLSACSHAGFVNEGKRYYDQIKNEHQIAPEMSHYACMVDLLA 580
Query: 266 KCQKVEVAQRVFDSM-ADRNLVCWNAMILGHCIHGKPE 302
+ AQ M + + + W +++ +H E
Sbjct: 581 RAGLFSEAQEFIRRMPVEPDAIAWGSLLSACRVHKNAE 618
>gi|356559204|ref|XP_003547890.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g29230-like [Glycine max]
Length = 619
Score = 254 bits (649), Expect = 7e-65, Method: Compositional matrix adjust.
Identities = 162/545 (29%), Positives = 249/545 (45%), Gaps = 86/545 (15%)
Query: 3 QLLQIQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAY 62
+L QIQA ++T GL N + T + + A G VF P NA+ + Y
Sbjct: 37 RLHQIQAQIVTHGLE-GNDYVTPSFITACARLGGIRRARRVFDKTAQPNGATWNAMFRGY 95
Query: 63 SNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFEL 122
+ + VV + +M + G PN +TF + SCA + G H + K G
Sbjct: 96 AQANCHLDVVVLFARMHRAGASPNCFTFPMVVKSCATANAAKEGEEVHCVVAKRGFKSNT 155
Query: 123 PVMNSLINMYGCFGA---------------------------------MDCARNMFVQMS 149
V +LI+MY G M AR +F
Sbjct: 156 FVGCALIHMYSLRGGVFVADAYKVFAEMRDKNVFAWTAIVAAHVACRDMVSARRLFDLAP 215
Query: 150 PRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFRE 209
RD++ WN +VSG++ GDM AA ELFD MP+R+V+SWN ++SGY+ +G +KLF E
Sbjct: 216 QRDVVLWNVVVSGYIELGDMVAARELFDRMPDRDVMSWNTVLSGYATNGEVESFVKLFEE 275
Query: 210 MM--------------------------------------KSGFRG----NDKTMASVLT 227
M K G G ND T+ +VLT
Sbjct: 276 MPVRNVYSWNGLIGGYVRNGLFKEALECFKRMLVLVEGEGKEGSDGVVVPNDYTVVAVLT 335
Query: 228 ACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVC 287
AC R G+ VH Y K N+ + ALID+Y+KC +E A VFD + ++++
Sbjct: 336 ACSRLGDLEMGKWVHVYAESIGYKGNLFVGNALIDMYAKCGVIEKALDVFDGLDVKDIIT 395
Query: 288 WNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKY 347
WN +I G +HG + + LF + PD +TF+G++ AC L+ G +
Sbjct: 396 WNTIINGLAMHGHVADALSLFERMKR-----AGERPDGVTFVGILSACTHMGLVRNGLLH 450
Query: 348 FRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSL 407
F+ M+D Y I P HY CM +L A L ++A +I+RKMP M ++++W +LL
Sbjct: 451 FQSMVDDYSIVPQIEHYGCMVDLLGRAGLIDKAVDIVRKMP-----MEPDAVIWAALLGA 505
Query: 408 CRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMP 467
CR V M E + ++++P + + + N+Y G+ +DVAR++ M+ ++P
Sbjct: 506 CRMYKNVEMAELALQRLIELEPNNPGNFVMVSNIYKDLGRSQDVARLKVAMRDTGFRKVP 565
Query: 468 GCRLV 472
GC ++
Sbjct: 566 GCSVI 570
Score = 42.4 bits (98), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 65/248 (26%), Positives = 100/248 (40%), Gaps = 32/248 (12%)
Query: 224 SVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADR 283
S+L CG R ++ + V L+ N + + I ++ + A+RVFD A
Sbjct: 27 SLLRTCGTCVRLHQ---IQAQIVTHGLEGNDYVTPSFITACARLGGIRRARRVFDKTAQP 83
Query: 284 NLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTE 343
N WNAM G+ + + LF + AG SP+ TF V+ +C A E
Sbjct: 84 NGATWNAMFRGYAQANCHLDVVVLFARMHR---AGA--SPNCFTFPMVVKSCATANAAKE 138
Query: 344 GRKYFRQMIDFYKIKPNFAHYWCMANLYA--GAELTEEAEEILRKMPEDNDNMSFESIMW 401
G + ++ K N + ++Y+ G +A ++ +M + N F
Sbjct: 139 GEE-VHCVVAKRGFKSNTFVGCALIHMYSLRGGVFVADAYKVFAEMRDKN---VFAWTAI 194
Query: 402 VSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWE--DVARVRELMK 459
V+ CR MV A+ D+ PQ R L NV V+G E D+ REL
Sbjct: 195 VAAHVACR-----DMVS--ARRLFDLAPQ---RDVVLWNV-VVSGYIELGDMVAARELFD 243
Query: 460 KRRMGRMP 467
RMP
Sbjct: 244 -----RMP 246
>gi|125588087|gb|EAZ28751.1| hypothetical protein OsJ_12773 [Oryza sativa Japonica Group]
Length = 698
Score = 254 bits (649), Expect = 8e-65, Method: Compositional matrix adjust.
Identities = 136/439 (30%), Positives = 236/439 (53%), Gaps = 14/439 (3%)
Query: 34 FGSPDYTVLVFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFM-PNSYTFVS 92
G D +F+ + + NA+I Y+ + + + + + +M+ M P+ +T S
Sbjct: 137 LGRMDLAESLFESMPDRSIVSWNAMIAGYNQNGLDAKALKLFSRMLHESSMAPDEFTITS 196
Query: 93 LFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRD 152
+ +CA G V G H L+ + + V N+LI+ Y G+++ AR + Q D
Sbjct: 197 VLSACANLGNVRIGKQVHAYILRTEMAYNSQVTNALISTYAKSGSVENARRIMDQSMETD 256
Query: 153 L--ISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREM 210
L IS+ +++ G+V+ GDM +A E+F +M R+VV+W MI GY ++G ++ LFR M
Sbjct: 257 LNVISFTALLEGYVKIGDMESAREMFGVMNNRDVVAWTAMIVGYEQNGRNDEAIDLFRSM 316
Query: 211 MKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKV 270
+ G N T+A+VL+ C A + G+ +H +R+ L+ + + A+I +Y++
Sbjct: 317 ITCGPEPNSYTLAAVLSVCASLACLDYGKQIHCRAIRSLLEQSSSVSNAIITMYARSGSF 376
Query: 271 EVAQRVFDSMADR-NLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFI 329
A+R+FD + R + W +MI+ HG+ EE + LF ++ + PD IT++
Sbjct: 377 PWARRMFDQVCWRKETITWTSMIVALAQHGQGEEAVGLFEEMLR-----AGVEPDRITYV 431
Query: 330 GVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPE 389
GV+ AC A + EG++Y+ Q+ + ++I P +HY CM +L A A L EA+E +R+MP
Sbjct: 432 GVLSACSHAGFVNEGKRYYDQIKNEHQIAPEMSHYACMVDLLARAGLFSEAQEFIRRMPV 491
Query: 390 DNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWE 449
+ D +I W SLLS CR + E A+ + +DP + Y + NVY+ G+W
Sbjct: 492 EPD-----AIAWGSLLSACRVHKNAELAELAAEKLLSIDPNNSGAYSAIANVYSACGRWS 546
Query: 450 DVARVRELMKKRRMGRMPG 468
D AR+ + K++ + + G
Sbjct: 547 DAARIWKARKEKAVRKETG 565
Score = 163 bits (412), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 97/311 (31%), Positives = 152/311 (48%), Gaps = 39/311 (12%)
Query: 70 QGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLI 129
+ + L M +GF P +T ++ SCA T G H +K G+ +PV NS++
Sbjct: 41 EAIKTLLDMTADGFTPTQFTLTNVLSSCAVTQAGAVGRKVHSFVVKLGLGSCVPVANSVL 100
Query: 130 NMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNI 189
NMYG G + A +F +M R + SWN++VS + G M A LF+ MP+R++VSWN
Sbjct: 101 NMYGKCGDSETATTVFERMPVRSVSSWNAMVSLNTHLGRMDLAESLFESMPDRSIVSWNA 160
Query: 190 MISGYSKSGNPGCSLKLFREMM-KSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRT 248
MI+GY+++G +LKLF M+ +S ++ T+ SVL+AC G+ VH Y +RT
Sbjct: 161 MIAGYNQNGLDAKALKLFSRMLHESSMAPDEFTITSVLSACANLGNVRIGKQVHAYILRT 220
Query: 249 SLKPNIILDTALIDLYSKCQKVEVAQRVFDS----------------------------- 279
+ N + ALI Y+K VE A+R+ D
Sbjct: 221 EMAYNSQVTNALISTYAKSGSVENARRIMDQSMETDLNVISFTALLEGYVKIGDMESARE 280
Query: 280 ----MADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICAC 335
M +R++V W AMI+G+ +G+ +E I LF +++ P+ T V+ C
Sbjct: 281 MFGVMNNRDVVAWTAMIVGYEQNGRNDEAIDLFRSMIT-----CGPEPNSYTLAAVLSVC 335
Query: 336 VRAELLTEGRK 346
L G++
Sbjct: 336 ASLACLDYGKQ 346
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 70/272 (25%), Positives = 132/272 (48%), Gaps = 45/272 (16%)
Query: 165 RSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMAS 224
+SG ++ A +F MPER+ VSW +M+ G +++G G ++K +M GF T+ +
Sbjct: 4 KSGRLADARGVFAEMPERDAVSWTVMVVGLNRAGRFGEAIKTLLDMTADGFTPTQFTLTN 63
Query: 225 VLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKC----------------- 267
VL++C + GR VH + V+ L + + +++++Y KC
Sbjct: 64 VLSSCAVTQAGAVGRKVHSFVVKLGLGSCVPVANSVLNMYGKCGDSETATTVFERMPVRS 123
Query: 268 --------------QKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVN 313
++++A+ +F+SM DR++V WNAMI G+ +G + +KLF+ +++
Sbjct: 124 VSSWNAMVSLNTHLGRMDLAESLFESMPDRSIVSWNAMIAGYNQNGLDAKALKLFSRMLH 183
Query: 314 GTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMAN---- 369
+ S++PDE T V+ AC G + + Y ++ A+ + N
Sbjct: 184 ES----SMAPDEFTITSVLSACANL-----GNVRIGKQVHAYILRTEMAYNSQVTNALIS 234
Query: 370 LYAGAELTEEAEEIL-RKMPEDNDNMSFESIM 400
YA + E A I+ + M D + +SF +++
Sbjct: 235 TYAKSGSVENARRIMDQSMETDLNVISFTALL 266
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 62/278 (22%), Positives = 112/278 (40%), Gaps = 32/278 (11%)
Query: 27 LLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPN 86
LL+ G + +F +NN A+I Y + D+ + + MI G PN
Sbjct: 265 LLEGYVKIGDMESAREMFGVMNNRDVVAWTAMIVGYEQNGRNDEAIDLFRSMITCGPEPN 324
Query: 87 SYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFV 146
SYT ++ CA C++ G H A+++ ++ V N++I MY G+ AR MF
Sbjct: 325 SYTLAAVLSVCASLACLDYGKQIHCRAIRSLLEQSSSVSNAIITMYARSGSFPWARRMF- 383
Query: 147 QMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKL 206
D + W + ++W MI ++ G ++ L
Sbjct: 384 -----DQVCW------------------------RKETITWTSMIVALAQHGQGEEAVGL 414
Query: 207 FREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRT-SLKPNIILDTALIDLYS 265
F EM+++G + T VL+AC + NEG+ + + P + ++DL +
Sbjct: 415 FEEMLRAGVEPDRITYVGVLSACSHAGFVNEGKRYYDQIKNEHQIAPEMSHYACMVDLLA 474
Query: 266 KCQKVEVAQRVFDSM-ADRNLVCWNAMILGHCIHGKPE 302
+ AQ M + + + W +++ +H E
Sbjct: 475 RAGLFSEAQEFIRRMPVEPDAIAWGSLLSACRVHKNAE 512
>gi|356565111|ref|XP_003550788.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Glycine max]
Length = 478
Score = 254 bits (649), Expect = 8e-65, Method: Compositional matrix adjust.
Identities = 143/445 (32%), Positives = 230/445 (51%), Gaps = 12/445 (2%)
Query: 47 INNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERG 106
++NP T N VI+ Y+ S P + V Y M+ + P+ +T SL +CA+ G V+ G
Sbjct: 1 MDNPTTTVWNHVIRGYARSHTPWKAVECYTHMVSSKAEPDGFTHSSLLSACARGGLVKEG 60
Query: 107 GMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRS 166
H L G + V SLI Y G ++ AR++F M R ++SWNS+++G+VR
Sbjct: 61 EQVHATVLVKGYCSNVFVDTSLITFYAGRGGVERARHVFDGMPQRSVVSWNSMLAGYVRC 120
Query: 167 GDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVL 226
D A +FD+MP RNVVSW M++G +++G +L LF EM ++ + + + L
Sbjct: 121 ADFDGARRVFDVMPCRNVVSWTTMVAGCARNGKSRQALLLFGEMRRACVELDQVALVAAL 180
Query: 227 TACGRSARFNEGRSVHGY-----TVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMA 281
+AC GR +H Y R +P++ L+ ALI +Y+ C + A +VF M
Sbjct: 181 SACAELGDLKLGRWIHWYVQQRFVARNWQQPSVRLNNALIHMYASCGILHEAYQVFVKMP 240
Query: 282 DRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELL 341
++ V W +MI+ G +E + LF +++ V + PDEITFIGV+CAC A +
Sbjct: 241 RKSTVSWTSMIMAFAKQGLGKEALDLFKTMLSDGVKVDGVRPDEITFIGVLCACSHAGFV 300
Query: 342 TEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMW 401
EG + F M + I P+ HY CM +L + A L +EA ++ MP + ++ +W
Sbjct: 301 DEGHQIFASMKHTWGISPSIEHYGCMVDLLSRAGLLDEARGLIETMPLNPNDA-----IW 355
Query: 402 VSLLSLCRFQGAVAMVERLAKSFV-DMDPQDFSRYQFLL-NVYAVAGQWEDVARVRELMK 459
+LL CR + ++ V +++ + Y LL N+YA +W+DV VR+ M
Sbjct: 356 GALLGGCRIHRNSELASQVENKLVPELNGDQAAGYLVLLSNIYAFGQRWQDVITVRQKMI 415
Query: 460 KRRMGRMPGCRLVDLKEVVEKLKVG 484
+ + + PG + + VV G
Sbjct: 416 EMGVKKPPGRSWIQINGVVHNFIAG 440
>gi|449502858|ref|XP_004161763.1| PREDICTED: uncharacterized LOC101222622 [Cucumis sativus]
Length = 2355
Score = 254 bits (649), Expect = 8e-65, Method: Compositional matrix adjust.
Identities = 152/520 (29%), Positives = 261/520 (50%), Gaps = 46/520 (8%)
Query: 1 MKQLLQIQAHLITSGL-FFNNSFWTINLLKHSADFGSPDYTVLVFK-CINNPGTFCVNAV 58
M+QL +IQA +I S + + + + + S+ G+ ++VL+F ++ P F NA+
Sbjct: 37 MRQLFEIQAQIIASPIPSIDPNIIAVKFIGVSSSHGNLRHSVLIFNHFLSFPNIFAYNAL 96
Query: 59 IKAYSNSCVPDQGVVFYLQ--MIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKN 116
+KA+S + ++ ++ N P+ YTF S+ +CA V G H K
Sbjct: 97 LKAFSQHNAWHTTISYFNNQLVLPNAPNPDEYTFTSVLKACAGLAQVLEGQKVHCFVTKY 156
Query: 117 GVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSI----------------- 159
G + L V NSL+++Y G A+ +F +M RD++SWN++
Sbjct: 157 GCESNLFVRNSLVDLYFKVGCNCIAQKLFDEMVVRDVVSWNTLISGYCFSGMVDKARMVF 216
Query: 160 --------------VSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLK 205
+SG+ R G++ A +LF+ MP RNVVSWN MI+GY+++ +++
Sbjct: 217 DGMMEKNLVSWSTMISGYARVGNLEEARQLFENMPMRNVVSWNAMIAGYAQNEKYADAIE 276
Query: 206 LFREMM-KSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLY 264
LFR+M + G ND T+ SVL+AC + G+ +H + R ++ + L AL D+Y
Sbjct: 277 LFRQMQHEGGLAPNDVTLVSVLSACAHLGALDLGKWIHRFIRRNKIEVGLFLGNALADMY 336
Query: 265 SKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPD 324
+KC V A+ VF M +R+++ W+ +I+G ++G E F ++ + P+
Sbjct: 337 AKCGCVLEAKGVFHEMHERDVISWSIIIMGLAMYGYANEAFNFFAEMIE-----DGLEPN 391
Query: 325 EITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEIL 384
+I+F+G++ AC A L+ +G +YF M Y I P HY C+ +L + A ++AE ++
Sbjct: 392 DISFMGLLTACTHAGLVDKGLEYFDMMPQVYGITPKIEHYGCVVDLLSRAGRLDQAESLI 451
Query: 385 RKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAV 444
MP M I+W +LL CR ER+ +++D +L NVYA
Sbjct: 452 NSMP-----MQPNVIVWGALLGGCRIYKDAERGERVVWRILELDSNHSGSLVYLANVYAS 506
Query: 445 AGQWEDVARVRELMKKRRMGRMPGCRLVDLKEVVEKLKVG 484
G+ +D A R M+ + + PGC +++ V + +G
Sbjct: 507 MGRLDDAASCRLRMRDNKSMKTPGCSWIEINNSVYEFFMG 546
>gi|218189919|gb|EEC72346.1| hypothetical protein OsI_05579 [Oryza sativa Indica Group]
Length = 545
Score = 254 bits (649), Expect = 8e-65, Method: Compositional matrix adjust.
Identities = 140/483 (28%), Positives = 246/483 (50%), Gaps = 10/483 (2%)
Query: 1 MKQLLQIQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIK 60
+++L +I A +T GL N + + + A+FG P +F I +P +++
Sbjct: 33 IRELQRIHAQALTHGLHPNQQSISCKIFRSYAEFGRPADAGRLFDEIPHPDIISFTSLMS 92
Query: 61 AYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDF 120
+ + + + I +G P+ + V + G G + HGL + G+D
Sbjct: 93 LHLKLDHHWKAISVFSHAIASGHRPDGFAAVGALSASGGLGDQRIGSVVHGLIFRCGLDS 152
Query: 121 ELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMP 180
EL V N+L++MY G + AR +F +M +D ++W S++ G+++ + +A F MP
Sbjct: 153 ELVVCNALVDMYCRCGKFEPARTVFDRMLVKDEVTWGSMLYGYMKCVGVDSALSFFYQMP 212
Query: 181 ERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRS 240
++ VSW +I+G+ + P +L+LF +M+ G R N T+ VL+AC + GR+
Sbjct: 213 MKSTVSWTALITGHVQDKQPIQALELFGKMLLEGHRPNHITIVGVLSACADIGALDLGRA 272
Query: 241 VHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGK 300
+HGY +++ NII+ AL+D+Y+K + A VF+ + ++ W MI + G
Sbjct: 273 IHGYGSKSNATTNIIVTNALMDMYAKSGSIASAFSVFEEVQMKDAFTWTTMISSFTVQGN 332
Query: 301 PEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPN 360
+ ++LF ++ I P+ +TF+ V+ AC A L+ EGR+ F +M + Y I P
Sbjct: 333 GRKAVELFWDMLR-----SGILPNSVTFVSVLSACSHAGLIQEGRELFDKMREVYHIDPR 387
Query: 361 FAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERL 420
HY CM +L L EEAE ++ M + D ++W SLLS C G + E
Sbjct: 388 LEHYGCMVDLLGRGGLLEEAEALIDHMDVEPD-----IVIWRSLLSACLAHGNDRLAEIA 442
Query: 421 AKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLKEVVEK 480
K + +P D Y L N+YA++ +W++ +R+ M R++ + PGC +++ VV +
Sbjct: 443 GKEIIKREPGDDGVYVLLWNMYALSNRWKEALDMRKQMLSRKIYKKPGCSWIEVDGVVHE 502
Query: 481 LKV 483
V
Sbjct: 503 FLV 505
>gi|449447637|ref|XP_004141574.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g15300-like [Cucumis sativus]
Length = 542
Score = 254 bits (648), Expect = 9e-65, Method: Compositional matrix adjust.
Identities = 162/510 (31%), Positives = 248/510 (48%), Gaps = 53/510 (10%)
Query: 2 KQLLQIQAHLITSGLFFNNSFWTI--NLLKHSADF--GSPDYTVLVFKCINNPGTFCVNA 57
+ L Q+ A LI +GL NS ++ L+ SA G+ DY +F I+ P F N
Sbjct: 27 RSLKQLHAFLIVNGL---NSTTSVLRELIFVSAIVVSGTMDYAHQLFAQISQPDIFMWNT 83
Query: 58 VIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNG 117
+I+ + + P V Y QM G P+ +TF + +C K V+ G HG LK+G
Sbjct: 84 MIRGSAQTLKPATAVSLYTQMENRGVRPDKFTFSFVLKACTKLSWVKLGFGIHGKVLKSG 143
Query: 118 VDFELPVMNSLINM-------------------------------YGCFGAMDCARNMFV 146
V N+LI Y G +D AR +F
Sbjct: 144 FQSNTFVRNTLIYFHANCGDLATARALFDASAKREVVPWSALTAGYARRGKLDVARQLFD 203
Query: 147 QMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKL 206
+M +DL+SWN +++ + + G+M A +LFD +P+++VV+WN MI+GY S +L++
Sbjct: 204 EMPMKDLVSWNVMITAYAKHGEMEKARKLFDEVPKKDVVTWNAMIAGYVLSRLNKEALEM 263
Query: 207 FREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKP-NIILDTALIDLYS 265
F M G R +D TM S+L+A G+ +H +++L ALID+Y+
Sbjct: 264 FDAMRDLGQRPDDVTMLSILSASADLGDLEIGKKIHRSIFDMCCGDLSVLLSNALIDMYA 323
Query: 266 KCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDE 325
KC + A VF M ++ WN++I G +HG EE I LF ++ + P+E
Sbjct: 324 KCGSIGNALEVFQGMRKKDTSSWNSIIGGLALHGHAEESINLFQEMLR-----LKMKPNE 378
Query: 326 ITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILR 385
ITF+ V+ AC A + EGR YF M + +KI+PN HY CM ++ A L EA + +
Sbjct: 379 ITFVAVLVACSHAGKVREGRMYFNLMKNVFKIEPNIKHYGCMVDILGRAGLLIEAFDFI- 437
Query: 386 KMPEDNDNMSFE--SIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYA 443
D M E +I+W +LL CR G V + R + + M + Y L N+YA
Sbjct: 438 ------DTMEIEPNAIIWRTLLGACRVHGDVELGRRANEQLLKMRKDESGDYVLLSNIYA 491
Query: 444 VAGQWEDVARVRELMKKRRMGRMPGCRLVD 473
G+W+ V +VR+LM + + G L+D
Sbjct: 492 SQGEWDGVQKVRKLMDDGGVKKKVGHSLID 521
>gi|297737154|emb|CBI26355.3| unnamed protein product [Vitis vinifera]
Length = 550
Score = 254 bits (648), Expect = 9e-65, Method: Compositional matrix adjust.
Identities = 146/516 (28%), Positives = 258/516 (50%), Gaps = 42/516 (8%)
Query: 1 MKQLLQIQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIK 60
+K L I A L+ ++ F LL+ + FG+ DY VF I P + ++I
Sbjct: 15 LKSLKSIHARLLIESSVASSEFVINKLLRLYSRFGATDYAHKVFDEITQPNAYLWTSLIH 74
Query: 61 AYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDF 120
Y + D+ ++QM + ++T S+ + A+ + G +G A +
Sbjct: 75 GYVENRQYDEAFSLFIQMRREPISVLNFTISSVLKALARLTRFKGGQAVYGFAFDEMCEK 134
Query: 121 ELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMP 180
++ N +I+ YG +D AR F +M R+++SW S++ G+V++GDM+ A LFD MP
Sbjct: 135 DIVSWNMMISGYGNNDRVDIARKFFDRMPERNVVSWTSMICGYVKAGDMAEAQVLFDSMP 194
Query: 181 ERNVVSWNIMIS--------------------------------GYSKSGNPGCSLKLFR 208
+++ SWN+M+S GY+++G P +L+LF
Sbjct: 195 VKDLASWNVMVSGYMDIGDYTNGARCLFDQMPMKNLVTWSTMIGGYARNGQPLKALELFE 254
Query: 209 EMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQ 268
+ + ++ + +++AC + + S+ V SL ++ + T+LID+Y+KC
Sbjct: 255 RFKEQDIKPDETFILGIISACSQLGIIDAAESIIHNYVGPSLLSDLRVFTSLIDMYAKCG 314
Query: 269 KVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITF 328
+E A ++F+ ++L+C++ MI HG + I LF + +I PD +TF
Sbjct: 315 SIEKALQMFEMAHPKDLLCYSTMIAALANHGLGRDAIFLFDKMQR-----ANIKPDSVTF 369
Query: 329 IGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMP 388
+GV+ AC L+ EGRKYF+QM + + I+P+ HY C+ +L EEA ++R MP
Sbjct: 370 LGVLTACNHGGLVDEGRKYFKQMTEEFGIQPSEKHYACVVDLLGRVGCLEEAYNLIRNMP 429
Query: 389 EDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQW 448
++ S++W +LL+ CR V + E A ++P + Y L N+YA AG+W
Sbjct: 430 -----IAPHSVVWGALLAACRVHCNVQLAEVAAAELFKIEPDNSGNYILLSNIYAAAGRW 484
Query: 449 EDVARVRELMKKRRMGRMPGCRLVDLKEVVEKLKVG 484
VA+VR +++ R+ + G ++L VV + +G
Sbjct: 485 GSVAKVRAKIREHRVRKNRGSSWIELSHVVHEFVMG 520
>gi|225458036|ref|XP_002280360.1| PREDICTED: pentatricopeptide repeat-containing protein At1g25360
[Vitis vinifera]
Length = 799
Score = 254 bits (648), Expect = 9e-65, Method: Compositional matrix adjust.
Identities = 144/428 (33%), Positives = 223/428 (52%), Gaps = 14/428 (3%)
Query: 56 NAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALK 115
NA+I Y + + + + +M G + +T+ S+ +CA G G H L+
Sbjct: 260 NAMISGYVHHGFFLEALEMFRKMYLLGIQWDEFTYTSVLSACANAGFFLHGKQVHAYILR 319
Query: 116 N----GVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSA 171
+DF L V N+L +Y G +D AR +F QM +DL+SWN+I+SG+V +G +
Sbjct: 320 TEPRPSLDFSLSVNNALATLYWKCGKVDEARQVFNQMPVKDLVSWNAILSGYVNAGRIDE 379
Query: 172 AHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGR 231
A F+ MPERN+++W +MISG +++G SLKLF M GF D A + AC
Sbjct: 380 AKSFFEEMPERNLLTWTVMISGLAQNGFGEESLKLFNRMKSEGFEPCDYAFAGAIIACAW 439
Query: 232 SARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAM 291
A GR +H VR ++ ALI +Y+KC VE A +F +M + V WNAM
Sbjct: 440 LAALMHGRQLHAQLVRLGFDSSLSAGNALITMYAKCGVVEAAHCLFLTMPYLDSVSWNAM 499
Query: 292 ILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQM 351
I HG + ++LF ++ I PD ITF+ V+ C A L+ EG +YF+ M
Sbjct: 500 IAALGQHGHGAQALELFELMLK-----EDILPDRITFLTVLSTCSHAGLVEEGHRYFKSM 554
Query: 352 IDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQ 411
Y I P HY M +L A EA++++ MP + +W +LL+ CR
Sbjct: 555 SGLYGICPGEDHYARMIDLLCRAGKFSEAKDMIETMPVEPG-----PPIWEALLAGCRIH 609
Query: 412 GAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRL 471
G + + + A+ ++ PQ Y L N+YA G+W+DVA+VR+LM+ + + + PGC
Sbjct: 610 GNMDLGIQAAERLFELMPQHDGTYVLLSNMYATVGRWDDVAKVRKLMRDKGVKKEPGCSW 669
Query: 472 VDLKEVVE 479
++++ V
Sbjct: 670 IEVENKVH 677
Score = 179 bits (455), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 115/397 (28%), Positives = 198/397 (49%), Gaps = 51/397 (12%)
Query: 52 TFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMC-- 109
T C NA+I YS++ + + +++NGF P+++TF S+ G+ A VE C
Sbjct: 114 TVCYNAMITGYSHNNDGFGAIELFRDLLRNGFRPDNFTFTSVLGALALI--VEDEKQCQQ 171
Query: 110 -HGLALKNGVDFELPVMNSLINMY---------GCFGAMDCARNMFVQMSPRDLISWNSI 159
H +K+G F V+N+L++++ M AR +F +M+ RD +SW ++
Sbjct: 172 IHCAVVKSGSGFVTSVLNALLSVFVKCASSPLVSSSSLMAAARKLFDEMTERDELSWTTM 231
Query: 160 VSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGND 219
++G+VR+G++ AA + D M E+ VV+WN MISGY G +L++FR+M G + ++
Sbjct: 232 IAGYVRNGELDAARQFLDGMTEKLVVAWNAMISGYVHHGFFLEALEMFRKMYLLGIQWDE 291
Query: 220 KTMASVLTACGRSARFNEGRSVHGYTVRTSLKP----NIILDTALIDLYSKCQKVEVAQR 275
T SVL+AC + F G+ VH Y +RT +P ++ ++ AL LY KC KV+ A++
Sbjct: 292 FTYTSVLSACANAGFFLHGKQVHAYILRTEPRPSLDFSLSVNNALATLYWKCGKVDEARQ 351
Query: 276 VFDSMADRNLVCWNAMILGHCIHGK-----------PEEGIKLFTALVNGTVAGG----- 319
VF+ M ++LV WNA++ G+ G+ PE + +T +++G G
Sbjct: 352 VFNQMPVKDLVSWNAILSGYVNAGRIDEAKSFFEEMPERNLLTWTVMISGLAQNGFGEES 411
Query: 320 ----------SISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMAN 369
P + F G I AC L GR+ Q++ + + +
Sbjct: 412 LKLFNRMKSEGFEPCDYAFAGAIIACAWLAALMHGRQLHAQLVRL-GFDSSLSAGNALIT 470
Query: 370 LYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLS 406
+YA + E A + MP +S+ W ++++
Sbjct: 471 MYAKCGVVEAAHCLFLTMP------YLDSVSWNAMIA 501
Score = 95.9 bits (237), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 77/323 (23%), Positives = 151/323 (46%), Gaps = 52/323 (16%)
Query: 124 VMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPE-- 181
++N LI++Y + A ++F ++ D+++ ++++ H +G+ + A E+F P
Sbjct: 52 ILNRLIDVYCKSSDLVSAHHLFDEIRQPDIVARTTLIAAHSSAGNSNLAREIFFATPLGI 111
Query: 182 RNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSAR-FNEGRS 240
R+ V +N MI+GYS + + +++LFR+++++GFR ++ T SVL A + +
Sbjct: 112 RDTVCYNAMITGYSHNNDGFGAIELFRDLLRNGFRPDNFTFTSVLGALALIVEDEKQCQQ 171
Query: 241 VHGYTVRTSLKPNIILDTALIDLYSKC---------QKVEVAQRVFDSMADRNLVCWNAM 291
+H V++ + AL+ ++ KC + A+++FD M +R+ + W M
Sbjct: 172 IHCAVVKSGSGFVTSVLNALLSVFVKCASSPLVSSSSLMAAARKLFDEMTERDELSWTTM 231
Query: 292 ILGHC-----------IHGKPEEGIKLFTALVNGTVAGG---------------SISPDE 325
I G+ + G E+ + + A+++G V G I DE
Sbjct: 232 IAGYVRNGELDAARQFLDGMTEKLVVAWNAMISGYVHHGFFLEALEMFRKMYLLGIQWDE 291
Query: 326 ITFIGVICACVRAELLTEGRKYF--------RQMIDFYKIKPNFAHYWCMANLYAGAELT 377
T+ V+ AC A G++ R +DF + N A +A LY
Sbjct: 292 FTYTSVLSACANAGFFLHGKQVHAYILRTEPRPSLDF-SLSVNNA----LATLYWKCGKV 346
Query: 378 EEAEEILRKMPEDNDNMSFESIM 400
+EA ++ +MP D +S+ +I+
Sbjct: 347 DEARQVFNQMPV-KDLVSWNAIL 368
>gi|297794983|ref|XP_002865376.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297311211|gb|EFH41635.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 658
Score = 254 bits (648), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 148/505 (29%), Positives = 263/505 (52%), Gaps = 20/505 (3%)
Query: 1 MKQLLQIQAHLITSGLFFNNSFWTINLLKHSADFGSP--DYTVLVFKCINNPGTFCVNAV 58
+ Q+ QI H++ GL + + L++ G P Y V + + F AV
Sbjct: 63 LNQIKQIHGHVLRKGLD-QSCYILTKLIRTLTKLGVPMDPYPRRVIEPVQFRNPFLWTAV 121
Query: 59 IKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALK-NG 117
I+ Y+ D+ + Y M K P S+TF +L +C G + G H + G
Sbjct: 122 IRGYTIEGKFDEAIAMYGCMRKEEITPVSFTFSALLKACGSMGDLNLGRQFHAQTFRLRG 181
Query: 118 VDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFD 177
F + V N++I+MY G++ CAR +F +M RD+ISW +++ + R G+M +A +LF+
Sbjct: 182 FCF-VYVGNTMIDMYVKCGSIVCARKVFDEMPERDVISWTELIAAYARVGNMESAADLFE 240
Query: 178 IMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNE 237
+P +++V+W M++G++++ P +L+ F M KSG R ++ T+A ++AC +
Sbjct: 241 SLPTKDMVAWTAMVTGFAQNAKPQEALEYFDRMEKSGIRADEVTVAGYISACAQLGASKY 300
Query: 238 GRSVHGYTVRTSLKP--NIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGH 295
++ P ++++ +ALID+YSKC VE A VF SM ++N+ +++MILG
Sbjct: 301 ADRAVQIAQKSGYSPSDHVVIGSALIDMYSKCGNVEEAVNVFVSMNNKNVFSYSSMILGL 360
Query: 296 CIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFY 355
HG+ +E + LF +V T +I P+ +TF+G + AC + L+ +GR+ F M +
Sbjct: 361 ATHGRAQEALDLFHYMVTQT----AIKPNTVTFVGALTACSHSGLVDQGRQVFASMYQTF 416
Query: 356 KIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVA 415
++P HY CM +L A +EA E+++ M ++ +W +LL CR
Sbjct: 417 GVEPTRDHYTCMVDLLGRAGRLQEALELIKTM-----SVEPHGGVWGALLGACRIHNNPD 471
Query: 416 MVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLK 475
+ E A+ +++P Y L NVY+ AG W V VR+L+K++ + + P V
Sbjct: 472 IAEIAAEHLFELEPDIIGNYILLSNVYSSAGDWGGVLSVRKLIKEKGLKKTPAVSWV--- 528
Query: 476 EVVEKLKVGHFWRGGMKEEVNKMME 500
V + ++ F+ G + ++K ++
Sbjct: 529 -VDKNGQMHKFFPGNLNHPMSKKIQ 552
>gi|347954546|gb|AEP33773.1| organelle transcript processing 82, partial [Lobularia maritima]
Length = 695
Score = 254 bits (648), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 138/432 (31%), Positives = 227/432 (52%), Gaps = 45/432 (10%)
Query: 56 NAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALK 115
NA+I Y+ + + + + +M+K P+ T VS+ +CA++ +E G H
Sbjct: 189 NAMISGYAETGNNKEALELFKEMMKTNVRPDESTMVSVVSACAQSASIELGRQVHSWIDD 248
Query: 116 NGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHEL 175
+G L ++N+LI++Y ++ G++ A L
Sbjct: 249 HGFGSNLKIVNALIDLY-------------------------------IKCGEVETACGL 277
Query: 176 FDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARF 235
F+ + ++V+SWN +I GY+ +L LF+EM++SG ND TM S+L AC
Sbjct: 278 FEGLSYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNDVTMLSILPACAHLGAI 337
Query: 236 NEGRSVHGYTVRTSLKPNIILD---TALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMI 292
GR +H Y + LK T+LID+Y+KC +E AQ+VFDS+ +R+L WNAMI
Sbjct: 338 EIGRWIHVY-INKRLKGVANASSHRTSLIDMYAKCGDIEAAQQVFDSILNRSLSSWNAMI 396
Query: 293 LGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMI 352
G +HG+ +F+ + I PD+ITF+G++ AC + +L GR FR M
Sbjct: 397 FGFAMHGRANAAFDIFSRMRKN-----EIEPDDITFVGLLSACSHSGMLDLGRHIFRSMK 451
Query: 353 DFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQG 412
+ YKI P HY CM +L + L +EAEE++ M M + ++W SLL C+ G
Sbjct: 452 EDYKITPKLEHYGCMIDLLGHSGLFKEAEEMINTM-----EMEPDGVIWCSLLKACKMHG 506
Query: 413 AVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLV 472
V + E A++ + ++P++ Y L N+YA AG+W +VA++R L+ + M ++PGC +
Sbjct: 507 NVELGESYAQNLIKIEPKNPGSYVLLSNIYATAGRWNEVAKIRALLNDKGMKKVPGCSSI 566
Query: 473 DLKEVVEKLKVG 484
++ VV + +G
Sbjct: 567 EIDSVVHEFIIG 578
Score = 220 bits (560), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 136/433 (31%), Positives = 226/433 (52%), Gaps = 12/433 (2%)
Query: 4 LLQIQAHLITSGLFFNNSFWT--INLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKA 61
L I A +I +GL N + I S F Y + VF+ I P N + +
Sbjct: 3 LRMIHAQMIKTGLHNTNYALSKLIEFCVLSPHFDGLPYAISVFETIQEPNLLIWNTMFRG 62
Query: 62 YSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFE 121
++ S P + Y+ MI G +PN YTF L SCAK+ G HG LK G D +
Sbjct: 63 HALSSDPVSALYLYVCMISLGLLPNCYTFPFLLKSCAKSKAFREGQQIHGHVLKLGYDLD 122
Query: 122 LPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPE 181
L V SLI+MY G ++ AR +F Q S RD++S+ ++++G+ G +++A ++FD +P
Sbjct: 123 LYVHTSLISMYVQNGRLEDARKVFDQSSHRDVVSYTALITGYASKGYIASAQKMFDEIPI 182
Query: 182 RNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSV 241
++VVSWN MISGY+++GN +L+LF+EMMK+ R ++ TM SV++AC +SA GR V
Sbjct: 183 KDVVSWNAMISGYAETGNNKEALELFKEMMKTNVRPDESTMVSVVSACAQSASIELGRQV 242
Query: 242 HGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKP 301
H + N+ + ALIDLY KC +VE A +F+ ++ ++++ WN +I G+
Sbjct: 243 HSWIDDHGFGSNLKIVNALIDLYIKCGEVETACGLFEGLSYKDVISWNTLIGGYTHMNLY 302
Query: 302 EEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNF 361
+E + LF ++ SP+++T + ++ AC + GR + K N
Sbjct: 303 KEALLLFQEMLR-----SGESPNDVTMLSILPACAHLGAIEIGRWIHVYINKRLKGVANA 357
Query: 362 -AHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERL 420
+H + ++YA E A+++ + N ++S + M R A + R+
Sbjct: 358 SSHRTSLIDMYAKCGDIEAAQQVFDSIL--NRSLSSWNAMIFGFAMHGRANAAFDIFSRM 415
Query: 421 AKSFVDMDPQDFS 433
K+ +++P D +
Sbjct: 416 RKN--EIEPDDIT 426
Score = 40.0 bits (92), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 53/215 (24%), Positives = 91/215 (42%), Gaps = 18/215 (8%)
Query: 19 NNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQM 78
N S +L+ A G + VF I N NA+I ++ + + +M
Sbjct: 356 NASSHRTSLIDMYAKCGDIEAAQQVFDSILNRSLSSWNAMIFGFAMHGRANAAFDIFSRM 415
Query: 79 IKNGFMPNSYTFVSLFGSCAKTGCVERG-GMCHGLALKNGVDFELPVMNSLINMYGCFGA 137
KN P+ TFV L +C+ +G ++ G + + + +L +I++ G G
Sbjct: 416 RKNEIEPDDITFVGLLSACSHSGMLDLGRHIFRSMKEDYKITPKLEHYGCMIDLLGHSGL 475
Query: 138 MDCARNMF--VQMSPRDLISWNSIVS-----GHVRSGDMSAAHELFDIMPERNVVSWNIM 190
A M ++M P D + W S++ G+V G+ S A L I P +N S+ ++
Sbjct: 476 FKEAEEMINTMEMEP-DGVIWCSLLKACKMHGNVELGE-SYAQNLIKIEP-KNPGSYVLL 532
Query: 191 ISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASV 225
+ Y+ +G + E+ K NDK M V
Sbjct: 533 SNIYATAGR-------WNEVAKIRALLNDKGMKKV 560
>gi|296082968|emb|CBI22269.3| unnamed protein product [Vitis vinifera]
Length = 509
Score = 254 bits (648), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 149/483 (30%), Positives = 239/483 (49%), Gaps = 32/483 (6%)
Query: 1 MKQLLQIQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIK 60
+ Q+ QI A ++ + L SF L+ + V VF I +P N +I+
Sbjct: 30 LNQVKQIHAQVLKANLH-RESFVGQKLIAAFSLCRQMTLAVNVFNQIQDPDVLLYNTLIR 88
Query: 61 AYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDF 120
A+ + P + +M +G +++T+ L +C+ V M H K G
Sbjct: 89 AHVRNSEPLLAFSVFFEMQDSGVCADNFTYPFLLKACSGKVWVRVVEMIHAQVEKMGFCL 148
Query: 121 ELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMP 180
++ V NSLI+ Y G + AR +F +M RD +SWN+I+ G+V++G+M+AA ELF+ MP
Sbjct: 149 DIFVPNSLIDSYFKLGELGEARRLFDEMPERDTVSWNTILDGYVKAGEMNAAFELFEKMP 208
Query: 181 ERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRS 240
RNVVSW+ M++G + +D T+ S+L+AC S G+
Sbjct: 209 ARNVVSWST---------------------MEAGLKFDDGTVISILSACAVSGLLGLGKR 247
Query: 241 VHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGK 300
VH RT K + + ALID+Y+KC +E A +F M +++V WNA+I G +HG
Sbjct: 248 VHASIERTRFKCSTPVSNALIDMYAKCGSLENALSIFHGMVRKDVVSWNAIIQGLAMHGH 307
Query: 301 PEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPN 360
E+ ++LF+ + G PD++TF+GV+CAC A + EG YF M Y + P
Sbjct: 308 GEKALQLFSRM-----KGEGFVPDKVTFVGVLCACTHAGFVDEGLHYFHAMERDYGVPPE 362
Query: 361 FAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERL 420
HY CM +L +EA ++ MP + + +I+W +LL CR A + E +
Sbjct: 363 VEHYGCMVDLLGRGGRLKEAFRLVHSMPLEPN-----AIIWGTLLGACRMHSATGLAEEV 417
Query: 421 AKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLKEVVEK 480
V + D L N+YA AG W++ A +R MK + + G +++ + V +
Sbjct: 418 FDRLVKSELSDSGNLSMLSNIYAAAGDWDNFANIRLRMKSTSIQKPSGGSSIEVDDEVHE 477
Query: 481 LKV 483
V
Sbjct: 478 FTV 480
Score = 44.3 bits (103), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 52/281 (18%), Positives = 109/281 (38%), Gaps = 66/281 (23%)
Query: 231 RSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNA 290
R + N+ + +H ++ +L + LI +S C+++ +A VF+ + D +++ +N
Sbjct: 26 RCSSLNQVKQIHAQVLKANLHRESFVGQKLIAAFSLCRQMTLAVNVFNQIQDPDVLLYNT 85
Query: 291 MILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICAC-----------VRAE 339
+I H + +P +F + + V D T+ ++ AC + A+
Sbjct: 86 LIRAHVRNSEPLLAFSVFFEMQDSGVCA-----DNFTYPFLLKACSGKVWVRVVEMIHAQ 140
Query: 340 L------------------------LTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAE 375
+ L E R+ F +M + + N + + Y A
Sbjct: 141 VEKMGFCLDIFVPNSLIDSYFKLGELGEARRLFDEMPERDTVSWN-----TILDGYVKAG 195
Query: 376 LTEEAEEILRKMPEDN--------DNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDM 427
A E+ KMP N + F+ +S+LS C G + + +R+ S
Sbjct: 196 EMNAAFELFEKMPARNVVSWSTMEAGLKFDDGTVISILSACAVSGLLGLGKRVHASI--- 252
Query: 428 DPQDFSRYQ-------FLLNVYAVAGQWEDVARVRELMKKR 461
+ +R++ L+++YA G E+ + M ++
Sbjct: 253 ---ERTRFKCSTPVSNALIDMYAKCGSLENALSIFHGMVRK 290
>gi|15240085|ref|NP_196272.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75170345|sp|Q9FG16.1|PP367_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g06540
gi|10178110|dbj|BAB11403.1| selenium-binding protein-like [Arabidopsis thaliana]
gi|332003649|gb|AED91032.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 622
Score = 254 bits (648), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 133/446 (29%), Positives = 238/446 (53%), Gaps = 10/446 (2%)
Query: 39 YTVLVFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCA 98
Y +F I NP F N +I+ +S P + FY QM+K+ P++ TF L + +
Sbjct: 69 YAYGIFSQIQNPNLFVFNLLIRCFSTGAEPSKAFGFYTQMLKSRIWPDNITFPFLIKASS 128
Query: 99 KTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNS 158
+ CV G H ++ G ++ V NSL++MY G + A +F QM RD++SW S
Sbjct: 129 EMECVLVGEQTHSQIVRFGFQNDVYVENSLVHMYANCGFIAAAGRIFGQMGFRDVVSWTS 188
Query: 159 IVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGN 218
+V+G+ + G + A E+FD MP RN+ +W+IMI+GY+K+ ++ LF M + G N
Sbjct: 189 MVAGYCKCGMVENAREMFDEMPHRNLFTWSIMINGYAKNNCFEKAIDLFEFMKREGVVAN 248
Query: 219 DKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFD 278
+ M SV+++C G + Y V++ + N+IL TAL+D++ +C +E A VF+
Sbjct: 249 ETVMVSVISSCAHLGALEFGERAYEYVVKSHMTVNLILGTALVDMFWRCGDIEKAIHVFE 308
Query: 279 SMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRA 338
+ + + + W+++I G +HG + + F+ + ++ G I P ++TF V+ AC
Sbjct: 309 GLPETDSLSWSSIIKGLAVHGHAHKAMHYFSQM----ISLGFI-PRDVTFTAVLSACSHG 363
Query: 339 ELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFES 398
L+ +G + + M + I+P HY C+ ++ A EAE + KM ++ +
Sbjct: 364 GLVEKGLEIYENMKKDHGIEPRLEHYGCIVDMLGRAGKLAEAENFILKM-----HVKPNA 418
Query: 399 IMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELM 458
+ +LL C+ + ER+ + + P+ Y L N+YA AGQW+ + +R++M
Sbjct: 419 PILGALLGACKIYKNTEVAERVGNMLIKVKPEHSGYYVLLSNIYACAGQWDKIESLRDMM 478
Query: 459 KKRRMGRMPGCRLVDLKEVVEKLKVG 484
K++ + + PG L+++ + K +G
Sbjct: 479 KEKLVKKPPGWSLIEIDGKINKFTMG 504
Score = 47.4 bits (111), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 52/247 (21%), Positives = 107/247 (43%), Gaps = 29/247 (11%)
Query: 224 SVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDL------YSK-CQKVEVAQRV 276
++L +C + F++ + +HG+ +RT L ++ + + L+ L ++K + A +
Sbjct: 17 ALLQSC---SSFSDLKIIHGFLLRTHLISDVFVASRLLALCVDDSTFNKPTNLLGYAYGI 73
Query: 277 FDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACV 336
F + + NL +N +I +P + +T ++ I PD ITF +I A
Sbjct: 74 FSQIQNPNLFVFNLLIRCFSTGAEPSKAFGFYTQMLK-----SRIWPDNITFPFLIKASS 128
Query: 337 RAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSF 396
E + G + Q++ F + + + ++YA A I + M F
Sbjct: 129 EMECVLVGEQTHSQIVRF-GFQNDVYVENSLVHMYANCGFIAAAGRIFGQ-------MGF 180
Query: 397 ESIM-WVSLLS-LCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARV 454
++ W S+++ C+ MVE + F +M ++ + ++N YA +E +
Sbjct: 181 RDVVSWTSMVAGYCK----CGMVENAREMFDEMPHRNLFTWSIMINGYAKNNCFEKAIDL 236
Query: 455 RELMKKR 461
E MK+
Sbjct: 237 FEFMKRE 243
Score = 46.2 bits (108), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 26/115 (22%), Positives = 56/115 (48%), Gaps = 1/115 (0%)
Query: 35 GSPDYTVLVFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLF 94
G + + VF+ + + +++IK + + + ++ QMI GF+P TF ++
Sbjct: 298 GDIEKAIHVFEGLPETDSLSWSSIIKGLAVHGHAHKAMHYFSQMISLGFIPRDVTFTAVL 357
Query: 95 GSCAKTGCVERG-GMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQM 148
+C+ G VE+G + + +G++ L +++M G G + A N ++M
Sbjct: 358 SACSHGGLVEKGLEIYENMKKDHGIEPRLEHYGCIVDMLGRAGKLAEAENFILKM 412
>gi|15241448|ref|NP_199236.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75170229|sp|Q9FFG8.1|PP417_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g44230
gi|9759524|dbj|BAB10990.1| selenium-binding protein-like [Arabidopsis thaliana]
gi|91806984|gb|ABE66219.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|332007694|gb|AED95077.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 657
Score = 254 bits (648), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 145/477 (30%), Positives = 247/477 (51%), Gaps = 16/477 (3%)
Query: 1 MKQLLQIQAHLITSGLFFNNSFWTINLLKHSADFGSP--DYTVLVFKCINNPGTFCVNAV 58
+ Q+ QI H++ GL + + L++ G P Y V + + F AV
Sbjct: 62 LNQIKQIHGHVLRKGLD-QSCYILTKLIRTLTKLGVPMDPYARRVIEPVQFRNPFLWTAV 120
Query: 59 IKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALK-NG 117
I+ Y+ D+ + Y M K P S+TF +L +C + G H + G
Sbjct: 121 IRGYAIEGKFDEAIAMYGCMRKEEITPVSFTFSALLKACGTMKDLNLGRQFHAQTFRLRG 180
Query: 118 VDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFD 177
F + V N++I+MY ++DCAR +F +M RD+ISW +++ + R G+M A ELF+
Sbjct: 181 FCF-VYVGNTMIDMYVKCESIDCARKVFDEMPERDVISWTELIAAYARVGNMECAAELFE 239
Query: 178 IMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNE 237
+P +++V+W M++G++++ P +L+ F M KSG R ++ T+A ++AC +
Sbjct: 240 SLPTKDMVAWTAMVTGFAQNAKPQEALEYFDRMEKSGIRADEVTVAGYISACAQLGASKY 299
Query: 238 GRSVHGYTVRTSLKP--NIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGH 295
++ P ++++ +ALID+YSKC VE A VF SM ++N+ +++MILG
Sbjct: 300 ADRAVQIAQKSGYSPSDHVVIGSALIDMYSKCGNVEEAVNVFMSMNNKNVFTYSSMILGL 359
Query: 296 CIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFY 355
HG+ +E + LF +V T I P+ +TF+G + AC + L+ +GR+ F M +
Sbjct: 360 ATHGRAQEALHLFHYMVTQT----EIKPNTVTFVGALMACSHSGLVDQGRQVFDSMYQTF 415
Query: 356 KIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVA 415
++P HY CM +L +EA E+++ M ++ +W +LL CR
Sbjct: 416 GVQPTRDHYTCMVDLLGRTGRLQEALELIKTM-----SVEPHGGVWGALLGACRIHNNPE 470
Query: 416 MVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLV 472
+ E A+ +++P Y L NVYA AG W V RVR+L+K++ + + P V
Sbjct: 471 IAEIAAEHLFELEPDIIGNYILLSNVYASAGDWGGVLRVRKLIKEKGLKKTPAVSWV 527
>gi|19071652|gb|AAL84319.1|AC073556_36 putative pentatricopeptide repeat containing protein [Oryza sativa
Japonica Group]
Length = 545
Score = 254 bits (648), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 150/486 (30%), Positives = 250/486 (51%), Gaps = 53/486 (10%)
Query: 35 GSPDYTVLVFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFM----PNSYTF 90
G+ + LVF I P F N +I+ +++ P V Y +M++ G P+ TF
Sbjct: 56 GAIAHAYLVFDQIPRPDRFMYNTLIRGAAHTAAPRDAVSLYTRMLRRGGGGGVRPDKLTF 115
Query: 91 VSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMY------------------ 132
+ +C G + G H +K G + + V N+LI M+
Sbjct: 116 PFVLRACTAMGAGDTGVQVHAHVVKAGCESDAFVKNALIGMHASCGNLGIAAALFDGRAR 175
Query: 133 -----------GCF--GAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIM 179
GC G + AR++F + +DL+SWN +++ + + GDM+ A ELFD +
Sbjct: 176 EDAVAWSAMITGCARRGDIGAARDLFDECPVKDLVSWNVMITAYAKRGDMALARELFDQV 235
Query: 180 PERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGR 239
PER+VVSWN+MISGY + G+ +L+LF +M + G + + TM S+L+AC S + G+
Sbjct: 236 PERDVVSWNVMISGYVRCGSHLHALELFEQMQRMGEKPDIVTMLSLLSACADSGDLDVGQ 295
Query: 240 SVHGYTVRTSLKPN---IILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHC 296
+H ++ N ++L ALID+Y+KC ++ A VF SM D+++ WN+++ G
Sbjct: 296 RLHS-SLSDMFSRNGFPVVLGNALIDMYAKCGSMKSAHEVFWSMRDKDVSTWNSIVGGLA 354
Query: 297 IHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYK 356
+HG E I +F ++ G V PDEITF+ V+ AC ++ +GR++F M Y+
Sbjct: 355 LHGHVLESIDMFEKMLKGKV-----RPDEITFVAVLIACSHGGMVDKGREFFNLMQHKYR 409
Query: 357 IKPNFAHYWCMANLYAGAELTEEAEEILRKMP-EDNDNMSFESIMWVSLLSLCRFQGAVA 415
++PN HY CM ++ A L +EA E + M E N S++W +LLS CR G +
Sbjct: 410 VEPNIKHYGCMVDMLGRAGLLKEAFEFIDTMKCEPN------SVIWRTLLSACRVHGEIE 463
Query: 416 MVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVD-- 473
+ + + + + Y L N+YA G+W ++R+LM + + G VD
Sbjct: 464 LAKHANRQLLKARNDESGDYVLLSNIYASVGEWFGSEKMRKLMDDSGVNKEAGQTFVDGS 523
Query: 474 LKEVVE 479
+K++++
Sbjct: 524 VKDIIQ 529
>gi|125524780|gb|EAY72894.1| hypothetical protein OsI_00769 [Oryza sativa Indica Group]
Length = 569
Score = 253 bits (647), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 158/524 (30%), Positives = 257/524 (49%), Gaps = 58/524 (11%)
Query: 7 IQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPG--TFCVNAVIKAYSN 64
+ AH + GL + +L + G VF + PG TF NA+I AYS+
Sbjct: 30 VHAHALHLGLHAQHDV-AGQILAAYSRLGRAADARRVFDAMP-PGRTTFHWNALISAYSS 87
Query: 65 SCVPDQGVVFYLQMIKNGFMPNSYTFVSL----------------FGSCAKTGC------ 102
C PD + +M G P++ T+ +L FG ++GC
Sbjct: 88 GCDPDAARDAFARMAAAGTRPDAVTWTALLSAHARSGKHADVLQLFGEMQRSGCEGNAES 147
Query: 103 ---------------VERGGMCHGLALKNGV-DFELPVMNSLINMYGCFGAMDCARNMFV 146
+ +G HG + G+ L V NSLI MYG G MD A+ F
Sbjct: 148 MAVALSACPYAGDLALAKGKAIHGCGVVKGLMHGYLFVTNSLICMYGKLGEMDDAKKAFR 207
Query: 147 QMSPRDLISWNSIVSGHVRSG------DMSAAHELFDIMPERNVVSWNIMISGYSKSGNP 200
+ ++ ++WN++++ + +G D+ A E NVVSW+ +I G++ SG+
Sbjct: 208 DATAKNTVTWNTLITSYAAAGLCDEALDVLAQMEQIGGTVAPNVVSWSAVIGGFASSGDT 267
Query: 201 GCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTAL 260
+L+LFR M + N TMA+VL+AC GR +HG+ ++ L + +++ L
Sbjct: 268 DRALELFRRMQQQWLSPNVVTMATVLSACVDLLALRLGRELHGHAMKAELDRHSLVENGL 327
Query: 261 IDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGS 320
I++Y+KC KV A++VFD M R+L+ WN+M+ G+ +HG +E + LFT +AG +
Sbjct: 328 INMYAKCGKVSGARKVFDGMKTRDLISWNSMLAGYGMHGLCDEALALFT-----DMAGAT 382
Query: 321 ISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEA 380
+ PD +TF+ V+ AC A +TEGR+ F +M+ +KI P+ HY CM L A L +A
Sbjct: 383 VEPDGVTFVAVLSACGHAGRVTEGRRLFDRMVRAHKISPSMEHYTCMVYLLGRAGLLRDA 442
Query: 381 EEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLN 440
E++ MP D +W +LL+ CR G AM E + + + Q + + N
Sbjct: 443 SELVETMPVRPD-----LCVWGALLNSCRIHGDAAMAEATIANVLQSEDQSTGNHMLITN 497
Query: 441 VYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLKEVVEKLKVG 484
+YA+ G W++ +VR + K+ + + PG +++ V G
Sbjct: 498 LYAMCGMWDESKKVRVMTKEAGLRKNPGQSWIEVDNKVVAFAAG 541
>gi|414873128|tpg|DAA51685.1| TPA: hypothetical protein ZEAMMB73_445170 [Zea mays]
Length = 987
Score = 253 bits (647), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 137/448 (30%), Positives = 244/448 (54%), Gaps = 17/448 (3%)
Query: 25 INLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFM 84
++L H G + V +F+ + N +I Y+ + + + F+ +M+ M
Sbjct: 420 VSLYTHQ---GRMELAVSMFENMVERSIVSWNTIIAGYNQNGLDGMALKFFSRMLSASSM 476
Query: 85 -PNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARN 143
P+++T S+ +CA ++ G H L+ G+ +MN+LI+ Y G+++ AR
Sbjct: 477 EPDAFTVTSVLSACANLRMLKMGKQMHSYILRTGMPCSSQIMNALISTYAKSGSVETARR 536
Query: 144 MFVQMSPRDL--ISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPG 201
+ Q DL IS+ +++ G+V+ GD A E+FDIM R+V++W MI GY ++G
Sbjct: 537 IMDQAVVADLNVISFTALLEGYVKLGDTKQAREIFDIMNNRDVIAWTAMIVGYHQNGQND 596
Query: 202 CSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALI 261
+++LFR M+ G N T+A+VL+AC A + G+ +H +R+ + ++ + A+I
Sbjct: 597 EAMELFRSMILIGPEPNSHTLAAVLSACASLAYLDYGKQIHCKAIRSLQEQSVSVSNAII 656
Query: 262 DLYSKCQKVEVAQRVFDSMADRN-LVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGS 320
+Y++ V +A+RVFD + R + W +MI+ HG E+ + LF +V
Sbjct: 657 TVYARSGSVPLARRVFDQICWRKETITWTSMIVAMAQHGLGEQAVVLFEEMVR-----VG 711
Query: 321 ISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEA 380
+ PD IT++GV+ AC A + +G++Y+ QM + + I P +HY CM +L+A A L EA
Sbjct: 712 VKPDHITYVGVLSACAHAGFVDKGKRYYEQMQNEHGIVPQMSHYACMVDLHARAGLLTEA 771
Query: 381 EEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLN 440
E +++MP ++ ++++W SLL+ CR + + E A + +DP + Y L N
Sbjct: 772 HEFIQRMP-----VAPDTVVWGSLLAACRVRKNADLAELAAGKLLSIDPHNSGAYSALAN 826
Query: 441 VYAVAGQWEDVARVRELMKKRRMGRMPG 468
VY+ G+W D AR+ +L K + + + G
Sbjct: 827 VYSACGRWNDAARIWKLRKDKGVKKETG 854
Score = 156 bits (394), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 113/411 (27%), Positives = 186/411 (45%), Gaps = 77/411 (18%)
Query: 7 IQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNP------GTFCVNAVIK 60
I AH + +GL + ++ NLL + A G +C+ + F N+++
Sbjct: 231 IHAHAVKAGLLVS-TYLCNNLLAYYASVGVSRGCFREARCLFDDIPYARRNAFTWNSLLS 289
Query: 61 AYSNSC-VPDQGVVF------------------------------YLQMIKNGFMPNSYT 89
Y+ S +PD VVF +L M+ GF P+ +T
Sbjct: 290 LYAKSGRLPDAHVVFAEMPDRDAVSWTIMIVGLNRSGRFWDAVKTFLDMVSEGFAPSQFT 349
Query: 90 FVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMS 149
++ SCA G H +K G+ +PV NS++ MYG G + AR +F +M
Sbjct: 350 LTNVLSSCAAMEACGVGRKVHPFVVKLGLSSCVPVANSVLYMYGKCGDAETARAVFERMQ 409
Query: 150 PRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFRE 209
R + SWN +VS + G M A +F+ M ER++VSWN +I+GY+++G G +LK F
Sbjct: 410 VRSVSSWNVMVSLYTHQGRMELAVSMFENMVERSIVSWNTIIAGYNQNGLDGMALKFFSR 469
Query: 210 MMKSGFRGNDK-TMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQ 268
M+ + D T+ SVL+AC G+ +H Y +RT + + + ALI Y+K
Sbjct: 470 MLSASSMEPDAFTVTSVLSACANLRMLKMGKQMHSYILRTGMPCSSQIMNALISTYAKSG 529
Query: 269 KVEVAQR---------------------------------VFDSMADRNLVCWNAMILGH 295
VE A+R +FD M +R+++ W AMI+G+
Sbjct: 530 SVETARRIMDQAVVADLNVISFTALLEGYVKLGDTKQAREIFDIMNNRDVIAWTAMIVGY 589
Query: 296 CIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRK 346
+G+ +E ++LF +++ + G P+ T V+ AC L G++
Sbjct: 590 HQNGQNDEAMELFRSMI---LIGP--EPNSHTLAAVLSACASLAYLDYGKQ 635
Score = 119 bits (299), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 78/274 (28%), Positives = 132/274 (48%), Gaps = 33/274 (12%)
Query: 106 GGMCHGLALKNGVDFELPVMNSLINMYGCFG-AMDC---ARNMF--VQMSPRDLISWNSI 159
G H A+K G+ + N+L+ Y G + C AR +F + + R+ +WNS+
Sbjct: 228 GRAIHAHAVKAGLLVSTYLCNNLLAYYASVGVSRGCFREARCLFDDIPYARRNAFTWNSL 287
Query: 160 VSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGND 219
+S + +SG + AH +F MP+R+ VSW IMI G ++SG ++K F +M+ GF +
Sbjct: 288 LSLYAKSGRLPDAHVVFAEMPDRDAVSWTIMIVGLNRSGRFWDAVKTFLDMVSEGFAPSQ 347
Query: 220 KTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDS 279
T+ +VL++C GR VH + V+ L + + +++ +Y KC E A+ VF+
Sbjct: 348 FTLTNVLSSCAAMEACGVGRKVHPFVVKLGLSSCVPVANSVLYMYGKCGDAETARAVFER 407
Query: 280 MADRNLVCWNAMILGHCIHGKPEEGIKLFTALV-------NGTVAG-------------- 318
M R++ WN M+ + G+ E + +F +V N +AG
Sbjct: 408 MQVRSVSSWNVMVSLYTHQGRMELAVSMFENMVERSIVSWNTIIAGYNQNGLDGMALKFF 467
Query: 319 ------GSISPDEITFIGVICACVRAELLTEGRK 346
S+ PD T V+ AC +L G++
Sbjct: 468 SRMLSASSMEPDAFTVTSVLSACANLRMLKMGKQ 501
>gi|347954536|gb|AEP33768.1| organelle transcript processing 82, partial [Nasturtium officinale]
Length = 670
Score = 253 bits (647), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 143/453 (31%), Positives = 231/453 (50%), Gaps = 49/453 (10%)
Query: 56 NAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALK 115
NA+I Y + + + + +M+K P+ T V++ + A++G +E G H
Sbjct: 164 NAMISGYVETGNYKEALELFKEMMKTNVRPDESTMVTVISASARSGSIELGRQVHSWIAD 223
Query: 116 NGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHEL 175
+G L ++N+LI+ Y G M+ A +F+ +S
Sbjct: 224 HGFGSNLKIVNALIDFYSKCGEMETACGLFLGLS-------------------------- 257
Query: 176 FDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARF 235
++V+SWNI+I GY+ +L LF+EM++SG ND TM S+L AC
Sbjct: 258 -----YKDVISWNILIGGYTHLNLYKEALLLFQEMLRSGESPNDVTMLSILHACAHLGAI 312
Query: 236 NEGRSVHGYTVR--TSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMIL 293
+ GR +H Y + + L T+LID+YSKC +E A +VF+SM ++L WNAMI
Sbjct: 313 DIGRWIHVYIDKRLKGVTNASSLRTSLIDMYSKCGDIEAAHQVFNSMLHKSLPAWNAMIF 372
Query: 294 GHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMID 353
G +HG+ +F+ + I PD+ITF+G++ AC A +L GR FR M
Sbjct: 373 GFAMHGRANAAFDIFSRMRKN-----EIKPDDITFVGLLSACSHAGMLDLGRHIFRSMTH 427
Query: 354 FYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGA 413
YKI P HY CM +L + L +EAEE++ M M + ++W SLL C+ G
Sbjct: 428 NYKITPKLEHYGCMIDLLGHSGLFKEAEEMISTM-----TMEPDGVIWCSLLKACKMHGN 482
Query: 414 VAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVD 473
V + E+ A++ ++P + Y L N+YA AG+W +VAR+R L+ + M ++PGC ++
Sbjct: 483 VELGEKFAQNLFKIEPNNPGSYVLLSNIYATAGRWNEVARIRGLLNDKGMKKVPGCSSIE 542
Query: 474 LKEVVEKLKVGHFWRG------GMKEEVNKMME 500
+ VV + +G + GM EE+ +++
Sbjct: 543 IDSVVHEFIIGDKFHPRNREIYGMLEEMEVLLQ 575
Score = 197 bits (500), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 107/315 (33%), Positives = 173/315 (54%), Gaps = 5/315 (1%)
Query: 31 SADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTF 90
S F Y + VF+ I P N + + ++ S P + Y+ MI G +PNSYTF
Sbjct: 7 SPHFEGLPYAISVFETIQEPNLLIWNTMFRGHALSPDPVSALKLYVCMISLGLLPNSYTF 66
Query: 91 VSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSP 150
L SCAK + G HG LK G + +L V SLI+MY ++ A +F + S
Sbjct: 67 PFLLKSCAKLKASKEGLQIHGHVLKLGYELDLYVHTSLISMYVQNERLEDAHKVFDRSSH 126
Query: 151 RDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREM 210
RD++S+ ++V+G+ G + +A +FD +P ++VVSWN MISGY ++GN +L+LF+EM
Sbjct: 127 RDVVSYTALVTGYASRGYIESARNMFDEIPVKDVVSWNAMISGYVETGNYKEALELFKEM 186
Query: 211 MKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKV 270
MK+ R ++ TM +V++A RS GR VH + N+ + ALID YSKC ++
Sbjct: 187 MKTNVRPDESTMVTVISASARSGSIELGRQVHSWIADHGFGSNLKIVNALIDFYSKCGEM 246
Query: 271 EVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIG 330
E A +F ++ ++++ WN +I G+ +E + LF ++ SP+++T +
Sbjct: 247 ETACGLFLGLSYKDVISWNILIGGYTHLNLYKEALLLFQEMLR-----SGESPNDVTMLS 301
Query: 331 VICACVRAELLTEGR 345
++ AC + GR
Sbjct: 302 ILHACAHLGAIDIGR 316
>gi|357113878|ref|XP_003558728.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g15300-like [Brachypodium distachyon]
Length = 532
Score = 253 bits (647), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 154/513 (30%), Positives = 253/513 (49%), Gaps = 52/513 (10%)
Query: 1 MKQLLQIQAHLITSGLFFNNSFWTINLLKHS-ADFGSPDYTVLVFKCINNPGTFCVNAVI 59
++Q+ Q+ A ++ G + S L + A G+ + LVF I P F N +I
Sbjct: 21 LRQIKQVHALMVLRGFLSDPSALRELLFASAVAVRGAIAHAYLVFDQIPRPDLFMYNTLI 80
Query: 60 KAYSNSCVPDQGVVFYLQMIKNG----FMPNSYTFVSLFGSCAKTGCVERGGMCHGLALK 115
+ +++ P V Y +M + G P+ TF + +C G G H +K
Sbjct: 81 RGAAHTAAPRDAVSLYARMARRGSCGGVRPDKITFPFVLRACTAMGAGGTGAQVHAHVVK 140
Query: 116 NGVDFELPVMNSLINMY-----------------------------GCF--GAMDCARNM 144
G + + V N+LI M+ GC G + AR +
Sbjct: 141 AGCESDAFVRNALIGMHASCGELGVASALFDGRAREDAVAWSAMITGCARRGDIVAARKL 200
Query: 145 FVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSL 204
F + +D +SWN +++ + + G+M+ A LF+ +PER+VVSWN MISG+ + G+ ++
Sbjct: 201 FDECPVKDHVSWNVMITAYAKRGEMAPARVLFNRIPERDVVSWNAMISGHVRCGSHVYAM 260
Query: 205 KLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKP--NIILDTALID 262
+LF +M + G + + TM S+L+AC S + GR +H L+ +IL ALID
Sbjct: 261 ELFEQMQRMGQKPDVVTMLSLLSACADSGDIDVGRRLHSSLSEMFLRTGFTVILGNALID 320
Query: 263 LYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSIS 322
+Y+KC ++ A +VF M D+++ WN++I G +HG E I +F ++ V
Sbjct: 321 MYAKCGSMKSALQVFWVMRDKDVSTWNSIIGGLALHGHVLESIDVFKKMLKEKV-----R 375
Query: 323 PDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEE 382
PDEITF+ V+ AC ++ +GR+YF M Y+I+PN HY CM ++ A L +EA E
Sbjct: 376 PDEITFVAVLIACSHGGMVDKGREYFNLMQHHYRIEPNVKHYGCMVDMLGRAGLLKEAFE 435
Query: 383 ILRKMPEDNDNMSFE--SIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLN 440
+ D M E S++W +LL CR G + + E + + + Y L N
Sbjct: 436 FI-------DTMKVEPNSVIWRTLLGACRVHGEIELAEHANRQLLKARNDESGDYVLLSN 488
Query: 441 VYAVAGQWEDVARVRELMKKRRMGRMPGCRLVD 473
+YA AG+W + ++R+LM + + G +VD
Sbjct: 489 IYASAGEWSESEKMRKLMDDSGVNKQAGRTVVD 521
>gi|297727555|ref|NP_001176141.1| Os10g0400250 [Oryza sativa Japonica Group]
gi|13940614|gb|AAK50416.1|AC021891_17 Putative selenium-binding protein-like [Oryza sativa Japonica
Group]
gi|31431939|gb|AAP53645.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
gi|125574711|gb|EAZ15995.1| hypothetical protein OsJ_31439 [Oryza sativa Japonica Group]
gi|255679385|dbj|BAH94869.1| Os10g0400250 [Oryza sativa Japonica Group]
Length = 651
Score = 253 bits (647), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 136/430 (31%), Positives = 232/430 (53%), Gaps = 12/430 (2%)
Query: 56 NAVIKAYSNSCVPDQGVVFYLQMIKNGFM--PNSYTFVSLFGSCAKTGCVERGGMCHGLA 113
N +I Y P + + + +M+ + P+ T ++ C + +E G HG
Sbjct: 195 NTLIGGYVRRGNPAEALELFWRMVAEDAVVRPDEVTMIAAVSGCGQMRDLELGRRLHGFV 254
Query: 114 LKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAH 173
+GV + +MN+L++MY G+++ A+++F ++ R ++SW +++ G + G M A
Sbjct: 255 DSDGVSCTVRLMNALMDMYIKCGSLEMAKSVFERIEHRTVVSWTTMIVGFAKFGLMDDAR 314
Query: 174 ELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSA 233
++FD MPER+V WN +++GY + +L LF EM ++ ++ TM ++LTAC +
Sbjct: 315 KVFDEMPERDVFPWNALMTGYVQCKQCKEALSLFHEMQEASVVPDEITMVNLLTACSQLG 374
Query: 234 RFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMIL 293
G VH Y + L ++ L T+LID+Y+KC +E A +F + ++N + W AMI
Sbjct: 375 ALEMGMWVHRYIEKHRLVFSVALGTSLIDMYAKCGNIEKAIHIFKEIPEKNALTWTAMIC 434
Query: 294 GHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMID 353
G HG E I+ F ++ PDEITFIGV+ AC A L+ EGR++F M
Sbjct: 435 GLANHGHANEAIEHFRTMIE-----LGQKPDEITFIGVLSACCHAGLVKEGREFFSLMET 489
Query: 354 FYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGA 413
Y ++ HY CM +L A +EAE+++ MP + D +++W ++ CR QG
Sbjct: 490 KYHLERKMKHYSCMIDLLGRAGHLDEAEQLVNTMPMEPD-----AVVWGAIFFACRMQGN 544
Query: 414 VAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVD 473
+++ E+ A V++DP D Y L N+YA A + +VR +M+ + ++PGC ++
Sbjct: 545 ISLGEKAAMKLVEIDPSDSGIYVLLANMYAEANMRKKADKVRAMMRHLGVEKVPGCSCIE 604
Query: 474 LKEVVEKLKV 483
L VV + V
Sbjct: 605 LNGVVHEFIV 614
Score = 121 bits (304), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 109/442 (24%), Positives = 189/442 (42%), Gaps = 78/442 (17%)
Query: 6 QIQAHLITSGLFFNNS-------FWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAV 58
QI AHL+ +GL + S + A P +++ NA
Sbjct: 28 QIHAHLLAAGLLQDFSSLLAAAYALSTTATATDARTSPPSPLRHALALLSSLPASAYNAA 87
Query: 59 IKAYSNSCVPDQ---GVV-----FYLQMIKNGFM-PNSYTFVSLFGSCAKTGCVERGGMC 109
I+A S S D+ GVV Y ++++G P+ TF L +CA+ G
Sbjct: 88 IRALSLSDDGDRHGHGVVRRCLPLYRALLRSGTARPDHLTFPFLLKACARLREWGYGDAA 147
Query: 110 HGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDM 169
L+ G+D ++ V+N+ + G M+ AR +F + RDL+SWN+++ G+VR G+
Sbjct: 148 LAHVLRLGLDSDVFVVNAATHFLSIRGPMEDARRLFDRSPVRDLVSWNTLIGGYVRRGNP 207
Query: 170 SAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTAC 229
+ A ELF M + V R ++ TM + ++ C
Sbjct: 208 AEALELFWRMVAEDAV-----------------------------VRPDEVTMIAAVSGC 238
Query: 230 GRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWN 289
G+ GR +HG+ + + L AL+D+Y KC +E+A+ VF+ + R +V W
Sbjct: 239 GQMRDLELGRRLHGFVDSDGVSCTVRLMNALMDMYIKCGSLEMAKSVFERIEHRTVVSWT 298
Query: 290 AMILGHCIHG-----------KPEEGIKLFTALVNGTV---------------AGGSISP 323
MI+G G PE + + AL+ G V S+ P
Sbjct: 299 TMIVGFAKFGLMDDARKVFDEMPERDVFPWNALMTGYVQCKQCKEALSLFHEMQEASVVP 358
Query: 324 DEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEI 383
DEIT + ++ AC + L G + + I+ +++ + A + ++YA E+A I
Sbjct: 359 DEITMVNLLTACSQLGALEMG-MWVHRYIEKHRLVFSVALGTSLIDMYAKCGNIEKAIHI 417
Query: 384 LRKMPEDNDNMSFESIMWVSLL 405
+++PE N ++ W +++
Sbjct: 418 FKEIPEKN------ALTWTAMI 433
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 63/293 (21%), Positives = 125/293 (42%), Gaps = 34/293 (11%)
Query: 23 WTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNG 82
WT ++ A FG D VF + F NA++ Y + + + +M +
Sbjct: 297 WT-TMIVGFAKFGLMDDARKVFDEMPERDVFPWNALMTGYVQCKQCKEALSLFHEMQEAS 355
Query: 83 FMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCAR 142
+P+ T V+L +C++ G +E G H K+ + F + + SLI+MY G ++ A
Sbjct: 356 VVPDEITMVNLLTACSQLGALEMGMWVHRYIEKHRLVFSVALGTSLIDMYAKCGNIEKAI 415
Query: 143 NMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGC 202
++F ++ ++ ++W + MI G + G+
Sbjct: 416 HIFKEIPEKNALTWTA-------------------------------MICGLANHGHANE 444
Query: 203 SLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGY-TVRTSLKPNIILDTALI 261
+++ FR M++ G + ++ T VL+AC + EGR + L+ + + +I
Sbjct: 445 AIEHFRTMIELGQKPDEITFIGVLSACCHAGLVKEGREFFSLMETKYHLERKMKHYSCMI 504
Query: 262 DLYSKCQKVEVAQRVFDSMA-DRNLVCWNAMILGHCIHGKPEEGIKLFTALVN 313
DL + ++ A+++ ++M + + V W A+ + G G K LV
Sbjct: 505 DLLGRAGHLDEAEQLVNTMPMEPDAVVWGAIFFACRMQGNISLGEKAAMKLVE 557
>gi|357508535|ref|XP_003624556.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355499571|gb|AES80774.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 476
Score = 253 bits (647), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 145/435 (33%), Positives = 228/435 (52%), Gaps = 17/435 (3%)
Query: 2 KQLLQIQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKA 61
KQL QI A +I L ++ L + S+ +G DY LVF +N+P F N +I+A
Sbjct: 34 KQLKQIHARIIRFRLT-HDQLLIRKLCQISSSYGKIDYASLVFDQLNDPDIFTWNVMIRA 92
Query: 62 YSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFE 121
Y+ S +P + + + MI GF+P+ +T+ + +C +G ++ G + HGLA+K G +
Sbjct: 93 YNTSGLPQKSIFLFKDMICCGFLPDKFTYPFVINACIASGVIDFGRLTHGLAIKMGFWSD 152
Query: 122 LPVMNSLINMYGCFGA-MDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMP 180
+ V N+++N+Y G +D +F +M R+++SW ++++G V G + A E+F+ +P
Sbjct: 153 VYVQNNMMNLYFKIGGDVDDGWKVFDKMRVRNVVSWTTVIAGLVACGKLDTAREVFERIP 212
Query: 181 ERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRS 240
+NVVSW MI+GY K+ NP + LF M+ R N+ T+ S++ AC GR
Sbjct: 213 SKNVVSWTAMINGYVKNDNPIKAFDLFERMLIDNVRPNEFTLVSLIKACTDLGSLKLGRR 272
Query: 241 VHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGK 300
+H + ++ + L TAL+D+YSKC ++ A +VF M RNL WN M+ +HG
Sbjct: 273 MHDFALKNGFELGPFLGTALVDMYSKCGSLDAAVKVFGLMEVRNLATWNTMLTSFGVHGF 332
Query: 301 PEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPN 360
E + LF + V PD ITF+GV+ ACV+ L G+KYF M + Y + P
Sbjct: 333 GNEVLDLFKEMEKAGVV-----PDAITFVGVLSACVQINDLELGQKYFSLMTEHYSLTPI 387
Query: 361 FAHYWCMANLYAGAELTEEAEEILRKMP---EDNDNMSFESIMWVSLLSLCRFQGAVAMV 417
HY CM LY A E + M E N N++ LL + G M
Sbjct: 388 LEHYTCMVGLYTRANELNEIRTLGDTMSLSIEANHNVA-------ELLQESKPTGFDDME 440
Query: 418 ERLAKSFVDMDPQDF 432
+ + K + D D +F
Sbjct: 441 KLIHKHYRDSDLSEF 455
Score = 55.1 bits (131), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 54/111 (48%), Gaps = 5/111 (4%)
Query: 235 FNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILG 294
F + + +H +R L + +L L + S K++ A VFD + D ++ WN MI
Sbjct: 33 FKQLKQIHARIIRFRLTHDQLLIRKLCQISSSYGKIDYASLVFDQLNDPDIFTWNVMIRA 92
Query: 295 HCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGR 345
+ G P++ I LF ++ PD+ T+ VI AC+ + ++ GR
Sbjct: 93 YNTSGLPQKSIFLFKDMI-----CCGFLPDKFTYPFVINACIASGVIDFGR 138
>gi|359495599|ref|XP_003635033.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g59200, chloroplastic-like [Vitis vinifera]
Length = 650
Score = 253 bits (647), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 146/495 (29%), Positives = 251/495 (50%), Gaps = 13/495 (2%)
Query: 1 MKQLLQIQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIK 60
+ Q+L I A LI +G + F LL+ + + DY +F+ +NP + A+I
Sbjct: 62 INQVLPIHAQLIRNG-HSQDPFMVFELLRSCSKCHAIDYASRIFQYTHNPNVYLYTALID 120
Query: 61 AYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDF 120
+ +S + + Y +M+ +P++Y S+ +C + G H ALK G
Sbjct: 121 GFVSSGNYLEAIQLYSRMLHESILPDNYLMASILKACGSQLALREGREVHSRALKLGFSS 180
Query: 121 ELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMP 180
V ++ +YG G + AR +F +M P D+++ ++S + G + A +F +
Sbjct: 181 NRLVRLRIMELYGKCGELGDARRVFEEM-PEDVVASTVMISSYSDQGLVEEAGAVFSRVR 239
Query: 181 ERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRS 240
++ V W MI G+ ++ +L+ FR M R N+ T+ VL+AC + GR
Sbjct: 240 RKDTVCWTAMIDGFVRNEETNRALEAFRGMQGENVRPNEFTIVCVLSACSQLGALEIGRW 299
Query: 241 VHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGK 300
VH Y + ++ N+ + ALI++YS+C ++ AQ VFD M DR+++ +N MI G ++GK
Sbjct: 300 VHSYMRKFEIELNLFVGNALINMYSRCGSIDEAQTVFDEMKDRDVITYNTMISGLSMNGK 359
Query: 301 PEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPN 360
+ I+LF +V G + P +TF+GV+ AC L+ G + F M Y+++P
Sbjct: 360 SRQAIELFRVMV-----GRRLRPTNVTFVGVLNACSHGGLVDFGFEIFHSMARDYRVEPQ 414
Query: 361 FAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERL 420
HY CM +L EEA +++R M M+ + IM +LLS C+ + + E++
Sbjct: 415 IEHYGCMVDLLGRVGRLEEAYDLIRTM-----KMTPDHIMLGTLLSACKMHKNLELGEQV 469
Query: 421 AKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLKEVVEK 480
AK D D Y L +VYA +G+W++ A+VR MK+ M + PGC +++ + +
Sbjct: 470 AKELEDRGQADSGTYVLLSHVYASSGKWKEAAQVRAKMKEAGMQKEPGCSSIEVNNEIHE 529
Query: 481 LKVGHFWRGGMKEEV 495
+G R KE +
Sbjct: 530 FLLGDL-RHPQKERI 543
Score = 51.6 bits (122), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 41/178 (23%), Positives = 73/178 (41%), Gaps = 11/178 (6%)
Query: 218 NDKTMAS-----VLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEV 272
N K++ S +++ RS N+ +H +R + + L+ SKC ++
Sbjct: 40 NPKSLKSLDQKQIISLLQRSRHINQVLPIHAQLIRNGHSQDPFMVFELLRSCSKCHAIDY 99
Query: 273 AQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVI 332
A R+F + N+ + A+I G G E I+L++ +++ SI PD ++
Sbjct: 100 ASRIFQYTHNPNVYLYTALIDGFVSSGNYLEAIQLYSRMLH-----ESILPDNYLMASIL 154
Query: 333 CACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPED 390
AC L EGR+ + + M LY +A + +MPED
Sbjct: 155 KACGSQLALREGREVHSRALKLGFSSNRLVRLRIM-ELYGKCGELGDARRVFEEMPED 211
>gi|357516905|ref|XP_003628741.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355522763|gb|AET03217.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 758
Score = 253 bits (646), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 159/540 (29%), Positives = 257/540 (47%), Gaps = 74/540 (13%)
Query: 2 KQLLQIQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKA 61
++L QIQA ++T GL +N F N + + F + +F I P T NA+ +
Sbjct: 26 ERLHQIQAQIVTHGLE-HNDFVAPNFITTCSRFKRIHHARKLFDKIPQPNTATWNAMFRG 84
Query: 62 YSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFE 121
Y + VV + ++ + MPN +TF + SC K V G H A K+G
Sbjct: 85 YLQNGHHRDTVVLFGELNRIAGMPNCFTFPMIIKSCGKLEGVREGEEVHCCATKHGFKSN 144
Query: 122 LPVMNSLINMY---GC-------FGAMD---------------------CARNMFVQMSP 150
V SLI+MY GC FG M R +F
Sbjct: 145 SFVATSLIDMYSKKGCVEDAYKVFGEMHERNVVVWTAIINGYILCGDVVSGRRLFDLAPE 204
Query: 151 RDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREM 210
RD++ W+ ++SG++ S +M+AA ELFD MP R+ +SWN M++GY+ +G K+F EM
Sbjct: 205 RDVVMWSVLISGYIESKNMAAARELFDKMPNRDTMSWNAMLNGYAVNGEVEMFEKVFDEM 264
Query: 211 ---------------MKSGFRG-----------------NDKTMASVLTACGRSARFNEG 238
+K+G ND T+ +VL+AC R + G
Sbjct: 265 PERNVFSWNGLIGGYVKNGLFSETLESFKRMLVEGHVIPNDFTLVAVLSACSRLGALDMG 324
Query: 239 RSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIH 298
+ VH Y K N+ + LID+Y+KC +E A VF+ + ++++ WN +I G IH
Sbjct: 325 KWVHVYAESIGYKGNLFVGNVLIDMYAKCGVIENAVVVFNCLDRKDIISWNTIINGLAIH 384
Query: 299 GKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIK 358
G + + +F + PD +TF+G++ AC L+ +G YF+ M+D Y I
Sbjct: 385 GHAPDALGMFDRM-----KSEGEEPDGVTFVGILSACTHMGLVKDGFLYFKSMVDHYSIV 439
Query: 359 PNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVE 418
P HY CM +L A L ++A +RKMP + D +++W +LL CR V + E
Sbjct: 440 PQIEHYGCMVDLLGRAGLLDQALNFIRKMPIEPD-----AVIWAALLGACRLYKNVEIAE 494
Query: 419 RLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLKEVV 478
+ ++++P + + + + N+Y G+ EDVAR++ M+ ++PGC +++ + V
Sbjct: 495 LALQRLIELEPNNPANFVMVSNIYKDLGRSEDVARLKIAMRDTGFRKLPGCSVIECNDSV 554
>gi|297800728|ref|XP_002868248.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297314084|gb|EFH44507.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 725
Score = 253 bits (646), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 143/491 (29%), Positives = 248/491 (50%), Gaps = 10/491 (2%)
Query: 18 FNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQ 77
++ F L+ A G +Y VF ++ N +I+ Y + D+ + +
Sbjct: 146 LSDPFVETGLMDMYAACGRINYARNVFDEMSQRDVVTWNTMIERYCRFGLLDEAFKLFEE 205
Query: 78 MIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGA 137
M + MP+ ++ +C +TG + + ++N V + ++ +L+ MY G
Sbjct: 206 MKDSNVMPDEMILCNIVSACGRTGNMRYNRAIYDFLIENDVRMDTHLLTALVTMYAGAGC 265
Query: 138 MDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKS 197
MD A F +MS R+L ++VSG+ ++G + A +FD +++V W MIS Y++S
Sbjct: 266 MDMAMEFFRKMSVRNLFVSTAMVSGYSKAGRLDDARVIFDQTEMKDLVCWTTMISAYAES 325
Query: 198 GNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILD 257
+P +L++F EM SG + + TM SV++AC ++ + VH YT L+ + +D
Sbjct: 326 DHPQEALRVFEEMCCSGIKPDVVTMLSVISACVNLGTLDKAKWVHRYTHLNGLESVLPID 385
Query: 258 TALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVA 317
ALI++Y+KC ++ A+ VF+ M RN+V W++MI +HG+ + + LF + V
Sbjct: 386 NALINMYAKCGGLDAARDVFEKMPTRNVVSWSSMINAFAMHGEASDSLSLFAQMKQENV- 444
Query: 318 GGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELT 377
P+E+TF+GV+ C + L+ EG+K F M D Y I P HY CM +L+ A L
Sbjct: 445 ----EPNEVTFVGVLYGCSHSGLVEEGKKIFASMTDEYNITPKIEHYGCMVDLFGRANLL 500
Query: 378 EEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQF 437
EA E++ MP M+ ++W SL+S CR G + + E AK + ++P
Sbjct: 501 REALEVIESMP-----MAPNVVIWGSLMSACRVHGELELGELAAKRILKLEPDHDGALVL 555
Query: 438 LLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLKEVVEKLKVGHFWRGGMKEEVNK 497
+ N+YA +W+ V +R +M+K+++ + G +DL + +G E K
Sbjct: 556 MSNIYAREYRWDYVRIIRWIMEKKKVFKEKGLSRIDLNGKSHEFLIGDKRHKQSNEIYTK 615
Query: 498 MMECRQSRSLA 508
+ E LA
Sbjct: 616 LYEVVSKLKLA 626
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 87/382 (22%), Positives = 181/382 (47%), Gaps = 21/382 (5%)
Query: 39 YTVLVFKCINN-PGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSC 97
Y + +F I+ P + N++++ S S P ++FY ++ G + +F + +
Sbjct: 65 YALNLFSSISPLPESIVFNSLLRDLSRSGEPRATILFYQRIRHVGGRFDRISFPPILKAV 124
Query: 98 AKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWN 157
+K + G HG A K + V L++MY G ++ ARN+F +MS RD+++WN
Sbjct: 125 SKVSALFEGMELHGFAFKIATLSDPFVETGLMDMYAACGRINYARNVFDEMSQRDVVTWN 184
Query: 158 SIVSGHVRSGDMSAAHELFDIMPERNVVSWNI----MISGYSKSGNPGCSLKLFREMMKS 213
+++ + R G + A +LF+ M + NV+ + ++S ++GN + ++ ++++
Sbjct: 185 TMIERYCRFGLLDEAFKLFEEMKDSNVMPDEMILCNIVSACGRTGNMRYNRAIYDFLIEN 244
Query: 214 GFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVA 273
R + + +++T + + + + S++ N+ + TA++ YSK +++ A
Sbjct: 245 DVRMDTHLLTALVTMYAGAGCMDMAME---FFRKMSVR-NLFVSTAMVSGYSKAGRLDDA 300
Query: 274 QRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVIC 333
+ +FD ++LVCW MI + P+E +++F + I PD +T + VI
Sbjct: 301 RVIFDQTEMKDLVCWTTMISAYAESDHPQEALRVFEEM-----CCSGIKPDVVTMLSVIS 355
Query: 334 ACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDN 393
ACV L + K+ + ++ + N+YA + A ++ KMP N
Sbjct: 356 ACVNLGTLDKA-KWVHRYTHLNGLESVLPIDNALINMYAKCGGLDAARDVFEKMPTRN-- 412
Query: 394 MSFESIMWVSLLSLCRFQGAVA 415
+ W S+++ G +
Sbjct: 413 ----VVSWSSMINAFAMHGEAS 430
Score = 101 bits (251), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 70/284 (24%), Positives = 131/284 (46%), Gaps = 21/284 (7%)
Query: 178 IMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNE 237
I P + +N ++ S+SG P ++ ++ + G R + + +L A + + E
Sbjct: 73 ISPLPESIVFNSLLRDLSRSGEPRATILFYQRIRHVGGRFDRISFPPILKAVSKVSALFE 132
Query: 238 GRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCI 297
G +HG+ + + + ++T L+D+Y+ C ++ A+ VFD M+ R++V WN MI +C
Sbjct: 133 GMELHGFAFKIATLSDPFVETGLMDMYAACGRINYARNVFDEMSQRDVVTWNTMIERYCR 192
Query: 298 HGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFY-- 355
G +E KLF + + V PDE+ ++ AC R T +Y R + DF
Sbjct: 193 FGLLDEAFKLFEEMKDSNVM-----PDEMILCNIVSACGR----TGNMRYNRAIYDFLIE 243
Query: 356 -KIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAV 414
++ + + +YAGA + A E RKM N ++VS + + A
Sbjct: 244 NDVRMDTHLLTALVTMYAGAGCMDMAMEFFRKMSVRN--------LFVSTAMVSGYSKA- 294
Query: 415 AMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELM 458
++ F + +D + +++ YA + ++ RV E M
Sbjct: 295 GRLDDARVIFDQTEMKDLVCWTTMISAYAESDHPQEALRVFEEM 338
>gi|125545880|gb|EAY92019.1| hypothetical protein OsI_13712 [Oryza sativa Indica Group]
Length = 804
Score = 253 bits (646), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 136/439 (30%), Positives = 235/439 (53%), Gaps = 14/439 (3%)
Query: 34 FGSPDYTVLVFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFM-PNSYTFVS 92
G D +F+ + NA+I Y+ + + + + + +M+ M P+ +T S
Sbjct: 243 LGRMDLAESLFESMPGRSIVSWNAMIAGYNQNGLDAKALKLFSRMLHESSMAPDEFTITS 302
Query: 93 LFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRD 152
+ +CA G V G H L+ + + V N+LI+ Y G+++ AR + Q D
Sbjct: 303 VLSACANLGNVRIGKQVHAYILRTEMAYNSQVTNALISTYAKSGSVENARRIMDQSMETD 362
Query: 153 L--ISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREM 210
L IS+ +++ G+V+ GDM +A E+F +M R+VV+W MI GY ++G ++ LFR M
Sbjct: 363 LNVISFTALLEGYVKIGDMESAREMFGVMNNRDVVAWTAMIVGYEQNGRNDEAIDLFRSM 422
Query: 211 MKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKV 270
+ G N T+A+VL+ C A + G+ +H +R+ L+ + + A+I +Y++
Sbjct: 423 ITCGPEPNSYTLAAVLSVCASLACLDYGKQIHCRAIRSLLERSSSVSNAIITMYARSGSF 482
Query: 271 EVAQRVFDSMADR-NLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFI 329
A+R+FD + R + W +MI+ HG+ EE + LF ++ + PD IT++
Sbjct: 483 PWARRMFDQVCWRKETITWTSMIVALAQHGQGEEAVGLFEEMLR-----AGVEPDRITYV 537
Query: 330 GVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPE 389
GV+ AC A + EG++Y+ Q+ + ++I P +HY CM +L A A L EA+E +R+MP
Sbjct: 538 GVLSACSHAGFVNEGKRYYDQIKNEHQIAPEMSHYACMVDLLARAGLFSEAQEFIRRMPV 597
Query: 390 DNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWE 449
+ D +I W SLLS CR + E A+ + +DP + Y + NVY+ G+W
Sbjct: 598 EPD-----AIAWGSLLSACRVHKNAELAELAAEKLLSIDPNNSGAYSAIANVYSACGRWS 652
Query: 450 DVARVRELMKKRRMGRMPG 468
D AR+ + K++ + + G
Sbjct: 653 DAARIWKARKEKAVRKETG 671
Score = 161 bits (408), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 97/311 (31%), Positives = 151/311 (48%), Gaps = 39/311 (12%)
Query: 70 QGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLI 129
+ + L M +GF P +T ++ SCA T G H +K G+ +PV NS++
Sbjct: 147 EAIKTLLDMTADGFTPTQFTLTNVLSSCAVTQAGAVGRKVHSFVVKLGLGSCVPVANSVL 206
Query: 130 NMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNI 189
NMYG G + A +F +M R + SWN++VS + G M A LF+ MP R++VSWN
Sbjct: 207 NMYGKCGDAETASTVFERMPVRSVSSWNAMVSLNTHLGRMDLAESLFESMPGRSIVSWNA 266
Query: 190 MISGYSKSGNPGCSLKLFREMM-KSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRT 248
MI+GY+++G +LKLF M+ +S ++ T+ SVL+AC G+ VH Y +RT
Sbjct: 267 MIAGYNQNGLDAKALKLFSRMLHESSMAPDEFTITSVLSACANLGNVRIGKQVHAYILRT 326
Query: 249 SLKPNIILDTALIDLYSKCQKVEVAQRVFDS----------------------------- 279
+ N + ALI Y+K VE A+R+ D
Sbjct: 327 EMAYNSQVTNALISTYAKSGSVENARRIMDQSMETDLNVISFTALLEGYVKIGDMESARE 386
Query: 280 ----MADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICAC 335
M +R++V W AMI+G+ +G+ +E I LF +++ P+ T V+ C
Sbjct: 387 MFGVMNNRDVVAWTAMIVGYEQNGRNDEAIDLFRSMIT-----CGPEPNSYTLAAVLSVC 441
Query: 336 VRAELLTEGRK 346
L G++
Sbjct: 442 ASLACLDYGKQ 452
Score = 128 bits (321), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 91/353 (25%), Positives = 164/353 (46%), Gaps = 51/353 (14%)
Query: 90 FVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYG----CFGAMDCARNMF 145
+ L C G H A+K G+ + N+L++ YG G + AR +F
Sbjct: 29 YARLLQLCQTAANPGAGRAIHARAVKAGLLASAYLCNNLLSYYGETAGGAGGLRDARRLF 88
Query: 146 --VQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCS 203
+ ++ R++ +WNS++S +SG ++ A +F MPER+ VSW +M+ G +++G G +
Sbjct: 89 DEIPLARRNVFTWNSLLSMFAKSGRLADARGVFAEMPERDAVSWTVMVVGLNRAGRFGEA 148
Query: 204 LKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDL 263
+K +M GF T+ +VL++C + GR VH + V+ L + + +++++
Sbjct: 149 IKTLLDMTADGFTPTQFTLTNVLSSCAVTQAGAVGRKVHSFVVKLGLGSCVPVANSVLNM 208
Query: 264 YSKCQKVEVAQRV-------------------------------FDSMADRNLVCWNAMI 292
Y KC E A V F+SM R++V WNAMI
Sbjct: 209 YGKCGDAETASTVFERMPVRSVSSWNAMVSLNTHLGRMDLAESLFESMPGRSIVSWNAMI 268
Query: 293 LGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMI 352
G+ +G + +KLF+ +++ + S++PDE T V+ AC G + +
Sbjct: 269 AGYNQNGLDAKALKLFSRMLHES----SMAPDEFTITSVLSACANL-----GNVRIGKQV 319
Query: 353 DFYKIKPNFAHYWCMAN----LYAGAELTEEAEEIL-RKMPEDNDNMSFESIM 400
Y ++ A+ + N YA + E A I+ + M D + +SF +++
Sbjct: 320 HAYILRTEMAYNSQVTNALISTYAKSGSVENARRIMDQSMETDLNVISFTALL 372
Score = 86.3 bits (212), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 62/278 (22%), Positives = 112/278 (40%), Gaps = 32/278 (11%)
Query: 27 LLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPN 86
LL+ G + +F +NN A+I Y + D+ + + MI G PN
Sbjct: 371 LLEGYVKIGDMESAREMFGVMNNRDVVAWTAMIVGYEQNGRNDEAIDLFRSMITCGPEPN 430
Query: 87 SYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFV 146
SYT ++ CA C++ G H A+++ ++ V N++I MY G+ AR MF
Sbjct: 431 SYTLAAVLSVCASLACLDYGKQIHCRAIRSLLERSSSVSNAIITMYARSGSFPWARRMF- 489
Query: 147 QMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKL 206
D + W + ++W MI ++ G ++ L
Sbjct: 490 -----DQVCW------------------------RKETITWTSMIVALAQHGQGEEAVGL 520
Query: 207 FREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRT-SLKPNIILDTALIDLYS 265
F EM+++G + T VL+AC + NEG+ + + P + ++DL +
Sbjct: 521 FEEMLRAGVEPDRITYVGVLSACSHAGFVNEGKRYYDQIKNEHQIAPEMSHYACMVDLLA 580
Query: 266 KCQKVEVAQRVFDSM-ADRNLVCWNAMILGHCIHGKPE 302
+ AQ M + + + W +++ +H E
Sbjct: 581 RAGLFSEAQEFIRRMPVEPDAIAWGSLLSACRVHKNAE 618
>gi|357519199|ref|XP_003629888.1| Pentatricopeptide repeat protein [Medicago truncatula]
gi|355523910|gb|AET04364.1| Pentatricopeptide repeat protein [Medicago truncatula]
Length = 515
Score = 253 bits (646), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 151/490 (30%), Positives = 254/490 (51%), Gaps = 25/490 (5%)
Query: 1 MKQLLQIQAHLITSGL----FFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVN 56
MKQ QI AH IT+ L + ++ L DF Y +F I NP F N
Sbjct: 1 MKQTKQIHAHAITNNLTRFSYISSRILAFFALSPRGDF---RYAETLFTHIPNPNIFDYN 57
Query: 57 AVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKN 116
++I +Y+ + + + +M+ PNS+TF +L +C +E+ L++K
Sbjct: 58 SIITSYTTNSQFHKLFFVFTKMLNTNIRPNSHTFTTLVKACVSLSSLEQ---VFTLSMKL 114
Query: 117 GVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELF 176
G ++ ++S+IN + A+ AR +F + S R+++ W S+VSG+ G ++ A ++F
Sbjct: 115 GNSSDVYFVSSVINAFSKHSAIHLARQVFDECSNRNVVCWTSLVSGYCSCGLVNEARDVF 174
Query: 177 DIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSG-----FRGNDKTMASVLTACGR 231
D MP RN S++ M+SGY ++G ++LFRE+ K + N + SVL AC
Sbjct: 175 DKMPLRNEASYSAMVSGYVRNGFFSEGVQLFRELKKKDKGCACLKFNGALLVSVLNACTM 234
Query: 232 SARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAM 291
F EG+ +H Y L+ ++ L TALID Y KC V+ A++VF+ M +++ W+AM
Sbjct: 235 VGAFEEGKWIHSYVEENGLEYDLELGTALIDFYMKCGWVKGAEKVFNKMPVKDVATWSAM 294
Query: 292 ILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQM 351
ILG I+G + ++LF + P+E+TF+GV+ AC L E + F M
Sbjct: 295 ILGLAINGNNKMALELFEKM-----EKVGPKPNEVTFVGVLTACNHKSLFGESARLFGIM 349
Query: 352 IDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQ 411
+ Y I P+ HY C+ ++ A + ++A + M + D +W SLL+ C
Sbjct: 350 SEKYNITPSIEHYGCVVDVLARSGQVKKALTFINSMHIEPDGA-----IWGSLLNGCLMH 404
Query: 412 GAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRL 471
G + +++ K ++ +P+ RY L N+YA G+WE V+ VR+LMK R + + G
Sbjct: 405 GHYELGQKVGKYLIEFEPKHSGRYVLLANMYANMGKWEGVSEVRKLMKDRGVMIVSGWSF 464
Query: 472 VDLKEVVEKL 481
+++ + + K
Sbjct: 465 IEIDQTIHKF 474
>gi|225459736|ref|XP_002284744.1| PREDICTED: pentatricopeptide repeat-containing protein At1g20230
[Vitis vinifera]
Length = 758
Score = 253 bits (646), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 144/454 (31%), Positives = 241/454 (53%), Gaps = 14/454 (3%)
Query: 49 NPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGM 108
P N +I +++S + + V+ +L M GF P+ T S+ + + G +
Sbjct: 212 QPNLISWNGMIAGFNHSGLYSEAVLMFLDMHLRGFEPDGTTISSVLPAVGDLEDLVMGIL 271
Query: 109 CHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGD 168
HG +K G+ + V ++LI+MYG +F QM D+ S N+ + G R+G
Sbjct: 272 IHGYVIKQGLVSDKCVSSALIDMYGKCSCTSEMSQVFDQMDHMDVGSCNAFIFGLSRNGQ 331
Query: 169 MSAAHELF----DIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMAS 224
+ ++ LF D E NVVSW MI+ S++G +L+LFREM +G + N T+
Sbjct: 332 VESSLRLFRQLKDQGMELNVVSWTSMIACCSQNGRDIEALELFREMQIAGVKPNSVTIPC 391
Query: 225 VLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRN 284
+L ACG A G++ H +++R + ++ + +ALID+Y+KC +++ ++ FD + +N
Sbjct: 392 LLPACGNIAALMHGKAAHCFSLRRGISTDVYVGSALIDMYAKCGRIQASRICFDGIPTKN 451
Query: 285 LVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEG 344
LVCWNA+I G+ +HGK +E +++F + PD I+F V+ AC ++ L EG
Sbjct: 452 LVCWNAVIAGYAMHGKAKEAMEIFDLMQR-----SGQKPDIISFTCVLSACSQSGLTEEG 506
Query: 345 RKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSL 404
YF M Y I+ HY CM L + A E+A ++R+MP + D + +W +L
Sbjct: 507 SYYFNSMSSKYGIEARVEHYACMVTLLSRAGKLEQAYAMIRRMPVNPD-----ACVWGAL 561
Query: 405 LSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMG 464
LS CR V++ E A+ +++P + Y L N+YA G W +V RVR++MK + +
Sbjct: 562 LSSCRVHNNVSLGEVAAEKLFELEPSNPGNYILLSNIYASKGMWNEVNRVRDMMKNKGLR 621
Query: 465 RMPGCRLVDLKEVVEKLKVGHFWRGGMKEEVNKM 498
+ PGC +++K V L G M + + K+
Sbjct: 622 KNPGCSWIEVKNKVHMLLAGDKSHPQMTQIIEKL 655
Score = 155 bits (392), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 104/371 (28%), Positives = 179/371 (48%), Gaps = 11/371 (2%)
Query: 1 MKQLLQIQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIK 60
+ Q Q AH++ +GLF N++ LL H A+ LV + P F + +I
Sbjct: 29 LSQTRQAHAHILKTGLF-NDTHLATKLLSHYANNMCFADATLVLDLVPEPNVFSFSTLIY 87
Query: 61 AYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDF 120
A+S + + QM+ G MP++ S +CA ++ HG+A +G D
Sbjct: 88 AFSKFHQFHHALSTFSQMLTRGLMPDNRVLPSAVKACAGLSALKPARQVHGIASVSGFDS 147
Query: 121 ELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMP 180
+ V +SL++MY + A +F +M D++SW+++V+ + R G + A LF M
Sbjct: 148 DSFVQSSLVHMYIKCNQIRDAHRVFDRMFEPDVVSWSALVAAYARQGCVDEAKRLFSEMG 207
Query: 181 ER----NVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFN 236
+ N++SWN MI+G++ SG ++ +F +M GF + T++SVL A G
Sbjct: 208 DSGVQPNLISWNGMIAGFNHSGLYSEAVLMFLDMHLRGFEPDGTTISSVLPAVGDLEDLV 267
Query: 237 EGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHC 296
G +HGY ++ L + + +ALID+Y KC +VFD M ++ NA I G
Sbjct: 268 MGILIHGYVIKQGLVSDKCVSSALIDMYGKCSCTSEMSQVFDQMDHMDVGSCNAFIFGLS 327
Query: 297 IHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYK 356
+G+ E ++LF L + + + +++ +I C + E + FR+M
Sbjct: 328 RNGQVESSLRLFRQLKD-----QGMELNVVSWTSMIACCSQNGRDIEALELFREM-QIAG 381
Query: 357 IKPNFAHYWCM 367
+KPN C+
Sbjct: 382 VKPNSVTIPCL 392
Score = 41.2 bits (95), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 45/200 (22%), Positives = 91/200 (45%), Gaps = 11/200 (5%)
Query: 27 LLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPN 86
L+ A G + + F I C NAVI Y+ + + + M ++G P+
Sbjct: 427 LIDMYAKCGRIQASRICFDGIPTKNLVCWNAVIAGYAMHGKAKEAMEIFDLMQRSGQKPD 486
Query: 87 SYTFVSLFGSCAKTGCVERGGMC-HGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMF 145
+F + +C+++G E G + ++ K G++ + ++ + G ++ A M
Sbjct: 487 IISFTCVLSACSQSGLTEEGSYYFNSMSSKYGIEARVEHYACMVTLLSRAGKLEQAYAMI 546
Query: 146 VQMSPR-DLISWNSIVSG-----HVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGN 199
+M D W +++S +V G++ AA +LF++ P N ++ ++ + Y+ G
Sbjct: 547 RRMPVNPDACVWGALLSSCRVHNNVSLGEV-AAEKLFELEPS-NPGNYILLSNIYASKGM 604
Query: 200 PGCSLKLFREMMKS-GFRGN 218
+ R+MMK+ G R N
Sbjct: 605 WN-EVNRVRDMMKNKGLRKN 623
>gi|224099379|ref|XP_002311462.1| predicted protein [Populus trichocarpa]
gi|222851282|gb|EEE88829.1| predicted protein [Populus trichocarpa]
Length = 538
Score = 253 bits (645), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 149/497 (29%), Positives = 241/497 (48%), Gaps = 73/497 (14%)
Query: 43 VFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGC 102
VF I P NA+ + YS + +V + QM MPN +TF + SC K
Sbjct: 7 VFDQIPEPNASIWNAMFRGYSQNESHKDVIVLFRQMKGLDVMPNCFTFPVILKSCVKINA 66
Query: 103 VERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSG 162
++ G H +K+G V +LI+MY GA+ A +F +M R++I+W ++++G
Sbjct: 67 LKEGEEVHCFVIKSGFRANPFVATTLIDMYASGGAIHAAYRVFGEMIERNVIAWTAMING 126
Query: 163 HVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREM----------MK 212
++ D+ A LFD+ PER++V WN MISGY ++ + + +LF +M +
Sbjct: 127 YITCCDLVTARRLFDLAPERDIVLWNTMISGYIEAKDVIRARELFDKMPNKDVMSWNTVL 186
Query: 213 SGFRGNDKTMA------------------------------SVLTA-------------- 228
+G+ N MA VL+A
Sbjct: 187 NGYASNGDVMACERLFEEMPERNVFSWNALIGGYTRNGCFSEVLSAFKRMLVDGTVVPND 246
Query: 229 ---------CGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDS 279
C R + G+ VH Y K N+ + AL+D+Y+KC VE A VF S
Sbjct: 247 ATLVNVLSACARLGALDLGKWVHVYAESHGYKGNVYVRNALMDMYAKCGVVETALDVFKS 306
Query: 280 MADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAE 339
M +++L+ WN +I G +HG + + LF+ + +AG +PD ITFIG++CAC
Sbjct: 307 MDNKDLISWNTIIGGLAVHGHGADALNLFSHM---KIAGE--NPDGITFIGILCACTHMG 361
Query: 340 LLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESI 399
L+ +G YF+ M D Y I P HY C+ +L A L A + +RKMP + D ++
Sbjct: 362 LVEDGFSYFKSMTDDYSIVPRIEHYGCIVDLLGRAGLLAHAVDFIRKMPIEAD-----AV 416
Query: 400 MWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMK 459
+W +LL CR V + E + ++ +P++ + Y L N+Y G+W+DVAR++ M+
Sbjct: 417 IWAALLGACRVYKNVELAELALEKLIEFEPKNPANYVMLSNIYGDFGRWKDVARLKVAMR 476
Query: 460 KRRMGRMPGCRLVDLKE 476
++PGC L+++ +
Sbjct: 477 DTGFKKLPGCSLIEVND 493
Score = 91.3 bits (225), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 61/225 (27%), Positives = 102/225 (45%), Gaps = 18/225 (8%)
Query: 169 MSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTA 228
M AH++FD +PE N WN M GYS++ + + LFR+M N T +L +
Sbjct: 1 MENAHKVFDQIPEPNASIWNAMFRGYSQNESHKDVIVLFRQMKGLDVMPNCFTFPVILKS 60
Query: 229 CGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCW 288
C + EG VH + +++ + N + T LID+Y+ + A RVF M +RN++ W
Sbjct: 61 CVKINALKEGEEVHCFVIKSGFRANPFVATTLIDMYASGGAIHAAYRVFGEMIERNVIAW 120
Query: 289 NAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISP--DEITFIGVICACVRAELLTEGRK 346
AMI G+ +LF ++P D + + +I + A+ + R+
Sbjct: 121 TAMINGYITCCDLVTARRLF-----------DLAPERDIVLWNTMISGYIEAKDVIRARE 169
Query: 347 YFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDN 391
F +M + + + + N YA E + +MPE N
Sbjct: 170 LFDKMPN-----KDVMSWNTVLNGYASNGDVMACERLFEEMPERN 209
>gi|449451283|ref|XP_004143391.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g37570-like [Cucumis sativus]
gi|449519310|ref|XP_004166678.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g37570-like [Cucumis sativus]
Length = 565
Score = 253 bits (645), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 152/533 (28%), Positives = 257/533 (48%), Gaps = 74/533 (13%)
Query: 3 QLLQIQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAY 62
L Q+ AHLI GL +SF + S Y+ VF + +P TF N+++ Y
Sbjct: 44 DLHQVHAHLIQKGLE-QDSFLVTQFISASNSVAHISYSTSVFDRVLSPSTFLWNSLVSGY 102
Query: 63 SNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFEL 122
+ Y++M + P+ YTF SL CA G + G HG L+ GVD ++
Sbjct: 103 CAKLQFVDIISLYVRMKREDGAPDRYTFPSLLKVCASEGKMMEGMALHGSILRCGVDEDI 162
Query: 123 PVMNSLINMYGCFGAMDCARNMFVQMSPRDLIS--------------------------- 155
V SL+N+YG G +DCAR +F MS R+++S
Sbjct: 163 YVTTSLVNLYGKGGLIDCARKVFDGMSERNVVSWTAMIVGYSSIGNLVEAKRLFDLMPER 222
Query: 156 ----WNSIVSGHVRSGDMSAAHELFDIMPERNVVS------------------------- 186
WN+I+ G+++ GD+ +A + FD MPE+NVVS
Sbjct: 223 NVASWNAIIGGYMKMGDVKSAEKAFDEMPEKNVVSFTTMIDGYAKAGDMLSARNLFQKAP 282
Query: 187 ------WNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRS 240
W+ +ISGY+++G P ++K F EM + + + S++ AC + + +
Sbjct: 283 ERDIIAWSALISGYTQNGQPNEAVKTFLEMSSRNVKPDKFVLTSLMLACSQLGNLDLAKW 342
Query: 241 VHGYTVRTSLK-PNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHG 299
V Y R S+ + ALID+ +KC +E A +F+ M R+L+ + +++ G IHG
Sbjct: 343 VDSYATRCSVDLRGAHVTAALIDMNAKCGNMERAMYLFEKMPKRDLISYCSVMQGLSIHG 402
Query: 300 KPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKP 359
++ + LF ++ G ++PD++ F ++ AC RA L+ EG YF M Y + P
Sbjct: 403 HGDQAVSLFERML-----GEDLTPDDVAFTVILTACSRAGLVDEGWHYFEMMRCKYSMVP 457
Query: 360 NFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVER 419
+ HY C+ +L + + +EA E+++ +P + + W +LL C+ + E
Sbjct: 458 SVDHYACIVDLLSRSGRLKEAYELIKSVP-----VQSHAGAWGALLGACKLYCDSELAEV 512
Query: 420 LAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLV 472
+A ++++P++ Y L N+YA A +W DV+ VR M +R + ++PGC +
Sbjct: 513 VASRLIEIEPENAGNYVLLSNIYAAADRWLDVSAVRNQMNERGLRKIPGCSWI 565
Score = 42.0 bits (97), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 37/200 (18%), Positives = 80/200 (40%), Gaps = 22/200 (11%)
Query: 192 SGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLK 251
+ ++K+ NP ++ L+ +++++L C ++ VH + ++ L+
Sbjct: 15 TSFAKTTNPKSNVSLY-------------SISALLKLCKTHIDLHQ---VHAHLIQKGLE 58
Query: 252 PNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTAL 311
+ L T I + + + VFD + + WN+++ G+C + + I L+ +
Sbjct: 59 QDSFLVTQFISASNSVAHISYSTSVFDRVLSPSTFLWNSLVSGYCAKLQFVDIISLYVRM 118
Query: 312 VNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLY 371
A PD TF ++ C + EG ++ + + + NLY
Sbjct: 119 KREDGA-----PDRYTFPSLLKVCASEGKMMEGMALHGSILRC-GVDEDIYVTTSLVNLY 172
Query: 372 AGAELTEEAEEILRKMPEDN 391
L + A ++ M E N
Sbjct: 173 GKGGLIDCARKVFDGMSERN 192
>gi|79329389|ref|NP_001031987.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75171830|sp|Q9FND7.1|PP410_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
At5g40405
gi|10178152|dbj|BAB11597.1| selenium-binding protein-like [Arabidopsis thaliana]
gi|332007161|gb|AED94544.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 612
Score = 253 bits (645), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 144/487 (29%), Positives = 254/487 (52%), Gaps = 15/487 (3%)
Query: 2 KQLLQIQAHLITSGLFFNNSFWTINLLKHSA--DFGSPDYTVLVFKCINNPGTFCVNAVI 59
K++ QI A L G ++ + +K A D DY + P F +N++I
Sbjct: 20 KEVRQIHAKLYVDGTLKDDHL-VGHFVKAVALSDHKYLDYANQILDRSEKPTLFALNSMI 78
Query: 60 KAYSNSCVPDQGVVFYLQMIKNG--FMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNG 117
+A+ S VP++ FY +++ +G P++YT L +C E G HG+ ++ G
Sbjct: 79 RAHCKSPVPEKSFDFYRRILSSGNDLKPDNYTVNFLVQACTGLRMRETGLQVHGMTIRRG 138
Query: 118 VDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFD 177
D + V LI++Y G +D +F + D + ++V+ R GD+ A +LF+
Sbjct: 139 FDNDPHVQTGLISLYAELGCLDSCHKVFNSIPCPDFVCRTAMVTACARCGDVVFARKLFE 198
Query: 178 IMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNE 237
MPER+ ++WN MISGY++ G +L +F M G + N M SVL+AC + ++
Sbjct: 199 GMPERDPIAWNAMISGYAQVGESREALNVFHLMQLEGVKVNGVAMISVLSACTQLGALDQ 258
Query: 238 GRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCI 297
GR H Y R +K + L T L+DLY+KC +E A VF M ++N+ W++ + G +
Sbjct: 259 GRWAHSYIERNKIKITVRLATTLVDLYAKCGDMEKAMEVFWGMEEKNVYTWSSALNGLAM 318
Query: 298 HGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKI 357
+G E+ ++LF+ + ++P+ +TF+ V+ C + EG+++F M + + I
Sbjct: 319 NGFGEKCLELFSLMKQ-----DGVTPNAVTFVSVLRGCSVVGFVDEGQRHFDSMRNEFGI 373
Query: 358 KPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMV 417
+P HY C+ +LYA A E+A I+++MP M + +W SLL R + +
Sbjct: 374 EPQLEHYGCLVDLYARAGRLEDAVSIIQQMP-----MKPHAAVWSSLLHASRMYKNLELG 428
Query: 418 ERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLKEV 477
+K ++++ + Y L N+YA + W++V+ VR+ MK + + + PGC ++++
Sbjct: 429 VLASKKMLELETANHGAYVLLSNIYADSNDWDNVSHVRQSMKSKGVRKQPGCSVMEVNGE 488
Query: 478 VEKLKVG 484
V + VG
Sbjct: 489 VHEFFVG 495
>gi|347954538|gb|AEP33769.1| organelle transcript processing 82, partial [Olimarabidopsis
pumila]
Length = 710
Score = 252 bits (644), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 136/432 (31%), Positives = 227/432 (52%), Gaps = 45/432 (10%)
Query: 56 NAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALK 115
NA I Y+ + + + + +M+K P+ T V++ +CA++G +E G H
Sbjct: 204 NAXISGYAETGNYKEALELFKKMMKTNVRPDESTMVTVLSACAQSGSIELGRQVHSWIND 263
Query: 116 NGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHEL 175
+G L ++N+LI++Y + G++ A L
Sbjct: 264 HGFGXNLKIVNALIDLYS-------------------------------KCGELETACGL 292
Query: 176 FDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARF 235
F + ++V+SWN +I GY+ +L LF++M++SG + ND TM S+L+AC
Sbjct: 293 FQGLSNKDVISWNTLIGGYTHMNLYKEALLLFQDMLRSGEKPNDVTMLSILSACAHLGAI 352
Query: 236 NEGRSVHGYTVR--TSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMIL 293
+ GR +H Y + + L T+LID+Y+KC +E AQ+VFDSM +R+L WNAMI
Sbjct: 353 DIGRWIHVYIDKRLKGVTNASSLRTSLIDMYAKCGDIEAAQQVFDSMLNRSLSSWNAMIF 412
Query: 294 GHCIHGKPEEGIKLFTAL-VNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMI 352
G +HG+ +F+ + NG I PD+ITF+G++ AC + +L GR FR M
Sbjct: 413 GFAMHGRANAAFDIFSRMRKNG------IEPDDITFVGLLSACSHSGMLDLGRHIFRSMT 466
Query: 353 DFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQG 412
YK+ P HY CM +L + L +EAE+++ M M + ++W SLL C+ G
Sbjct: 467 RDYKLMPKLEHYGCMIDLXGHSGLFKEAEKMINTM-----EMEPDGVIWCSLLKACKMHG 521
Query: 413 AVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLV 472
V + E A++ + ++P++ Y L N+YA A +W +VA+ R L+ + M ++PGC +
Sbjct: 522 NVELGESYAQNLIKIEPENPGSYVLLSNIYATAERWNEVAKTRALLNDKGMKKVPGCSSI 581
Query: 473 DLKEVVEKLKVG 484
++ VV + +G
Sbjct: 582 EIDSVVHEFIIG 593
Score = 212 bits (540), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 130/437 (29%), Positives = 227/437 (51%), Gaps = 14/437 (3%)
Query: 1 MKQLLQIQAHLITSGLFFNNSFWTINLLKH---SADFGSPDYTVLVFKCINNPGTFCVNA 57
++ L I A +I +GL N ++ LL+ S F Y + VF I P N
Sbjct: 15 LQSLRIIHAQMIKTGLH-NTNYALSKLLEXCVLSPHFDGLPYAISVFDTIQEPXLLIWNT 73
Query: 58 VIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNG 117
+ + ++ S P + Y+ M+ G +PNSYTF L SCAK+ + G HG LK G
Sbjct: 74 MFRGHALSSDPVSALKLYVCMVSLGLLPNSYTFPFLLKSCAKSXAFKEGQQLHGQVLKFG 133
Query: 118 VDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFD 177
D +L + SLI+MY G ++ A+ + + S RD++S+ ++++G+ G + +AH++FD
Sbjct: 134 FDLDLYIHTSLISMYVQNGRLEDAQKVXDKSSHRDVVSYTALITGYASRGXIESAHKMFD 193
Query: 178 IMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNE 237
+P ++VVSWN ISGY+++GN +L+LF++MMK+ R ++ TM +VL+AC +S
Sbjct: 194 EIPVKDVVSWNAXISGYAETGNYKEALELFKKMMKTNVRPDESTMVTVLSACAQSGSIEL 253
Query: 238 GRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCI 297
GR VH + N+ + ALIDLYSKC ++E A +F +++++++ WN +I G+
Sbjct: 254 GRQVHSWINDHGFGXNLKIVNALIDLYSKCGELETACGLFQGLSNKDVISWNTLIGGYTH 313
Query: 298 HGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMID--FY 355
+E + LF ++ P+++T + ++ AC + GR + ID
Sbjct: 314 MNLYKEALLLFQDMLR-----SGEKPNDVTMLSILSACAHLGAIDIGR-WIHVYIDKRLK 367
Query: 356 KIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVA 415
+ + + ++YA E A+++ M N ++S + M R A
Sbjct: 368 GVTNASSLRTSLIDMYAKCGDIEAAQQVFDSML--NRSLSSWNAMIFGFAMHGRANAAFD 425
Query: 416 MVERLAKSFVDMDPQDF 432
+ R+ K+ ++ D F
Sbjct: 426 IFSRMRKNGIEPDDITF 442
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 66/266 (24%), Positives = 116/266 (43%), Gaps = 35/266 (13%)
Query: 43 VFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGC 102
+F+ ++N N +I Y++ + + ++ + M+++G PN T +S+ +CA G
Sbjct: 292 LFQGLSNKDVISWNTLIGGYTHMNLYKEALLLFQDMLRSGEKPNDVTMLSILSACAHLGA 351
Query: 103 VERGGMCHGLALK--NGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIV 160
++ G H K GV + SLI+MY G ++ A+ +F M R L SWN+++
Sbjct: 352 IDIGRWIHVYIDKRLKGVTNASSLRTSLIDMYAKCGDIEAAQQVFDSMLNRSLSSWNAMI 411
Query: 161 SGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDK 220
G G +AA FDI F M K+G +D
Sbjct: 412 FGFAMHGRANAA---FDI----------------------------FSRMRKNGIEPDDI 440
Query: 221 TMASVLTACGRSARFNEGRSVHGYTVRT-SLKPNIILDTALIDLYSKCQKVEVAQRVFDS 279
T +L+AC S + GR + R L P + +IDL + A+++ ++
Sbjct: 441 TFVGLLSACSHSGMLDLGRHIFRSMTRDYKLMPKLEHYGCMIDLXGHSGLFKEAEKMINT 500
Query: 280 MA-DRNLVCWNAMILGHCIHGKPEEG 304
M + + V W +++ +HG E G
Sbjct: 501 MEMEPDGVIWCSLLKACKMHGNVELG 526
Score = 52.4 bits (124), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 50/228 (21%), Positives = 96/228 (42%), Gaps = 27/228 (11%)
Query: 239 RSVHGYTVRTSLKPNIILDTALIDLYSKC------QKVEVAQRVFDSMADRNLVCWNAMI 292
R +H ++T L + AL L C + A VFD++ + L+ WN M
Sbjct: 19 RIIHAQMIKTGLHNT---NYALSKLLEXCVLSPHFDGLPYAISVFDTIQEPXLLIWNTMF 75
Query: 293 LGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMI 352
GH + P +KL+ +V+ + P+ TF ++ +C ++ EG++ Q++
Sbjct: 76 RGHALSSDPVSALKLYVCMVSL-----GLLPNSYTFPFLLKSCAKSXAFKEGQQLHGQVL 130
Query: 353 DFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQG 412
F + H + ++Y E+A+++ D S + VS +L
Sbjct: 131 KFGFDLDLYIHT-SLISMYVQNGRLEDAQKV-------XDKSSHRDV--VSYTALITGYA 180
Query: 413 AVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKK 460
+ +E K F ++ +D + ++ YA G +++ EL KK
Sbjct: 181 SRGXIESAHKMFDEIPVKDVVSWNAXISGYAETGNYKEAL---ELFKK 225
Score = 40.8 bits (94), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 53/215 (24%), Positives = 93/215 (43%), Gaps = 18/215 (8%)
Query: 19 NNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQM 78
N S +L+ A G + VF + N NA+I ++ + + +M
Sbjct: 371 NASSLRTSLIDMYAKCGDIEAAQQVFDSMLNRSLSSWNAMIFGFAMHGRANAAFDIFSRM 430
Query: 79 IKNGFMPNSYTFVSLFGSCAKTGCVERG-GMCHGLALKNGVDFELPVMNSLINMYGCFGA 137
KNG P+ TFV L +C+ +G ++ G + + + +L +I++ G G
Sbjct: 431 RKNGIEPDDITFVGLLSACSHSGMLDLGRHIFRSMTRDYKLMPKLEHYGCMIDLXGHSGL 490
Query: 138 MDCARNMF--VQMSPRDLISWNSIVS-----GHVRSGDMSAAHELFDIMPERNVVSWNIM 190
A M ++M P D + W S++ G+V G+ S A L I PE N S+ ++
Sbjct: 491 FKEAEKMINTMEMEP-DGVIWCSLLKACKMHGNVELGE-SYAQNLIKIEPE-NPGSYVLL 547
Query: 191 ISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASV 225
+ Y+ + + + E+ K+ NDK M V
Sbjct: 548 SNIYATA-------ERWNEVAKTRALLNDKGMKKV 575
>gi|356519383|ref|XP_003528352.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g31430-like [Glycine max]
Length = 614
Score = 252 bits (644), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 146/474 (30%), Positives = 252/474 (53%), Gaps = 18/474 (3%)
Query: 6 QIQAHLITSGLFFN----NSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKA 61
++ A ++ +GL F+ NSF + A+ G + VF+ + + N +I
Sbjct: 129 KVHAFVVKTGLEFDPYVCNSF-----MDMYAELGLVEGFTQVFEEMPDRDAVSWNIMISG 183
Query: 62 YSNSCVPDQGVVFYLQM-IKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDF 120
Y ++ V Y +M ++ PN T VS +CA +E G H + + +D
Sbjct: 184 YVRCKRFEEAVDVYRRMWTESNEKPNEATVVSTLSACAVLRNLELGKEIHDY-IASELDL 242
Query: 121 ELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMP 180
+ N+L++MY G + AR +F M+ +++ W S+V+G+V G + A LF+ P
Sbjct: 243 TTIMGNALLDMYCKCGHVSVAREIFDAMTVKNVNCWTSMVTGYVICGQLDQARNLFERSP 302
Query: 181 ERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRS 240
R++V W MI+GY + ++ LF EM G + + + ++LT C +S +G+
Sbjct: 303 SRDIVLWTAMINGYVQFNRFEETIALFGEMQIRGVKPDKFIVVTLLTGCAQSGALEQGKW 362
Query: 241 VHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGK 300
+H Y +K + ++ TALI++Y+KC +E + +F+ + +++ W ++I G ++GK
Sbjct: 363 IHNYIDENRIKVDAVVGTALIEMYAKCGCIEKSFEIFNGLKEKDTTSWTSIICGLAMNGK 422
Query: 301 PEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPN 360
P E ++LF A+ + PD+ITF+ V+ AC A L+ EGRK F M Y I+PN
Sbjct: 423 PSEALELFKAMQT-----CGLKPDDITFVAVLSACSHAGLVEEGRKLFHSMSSMYHIEPN 477
Query: 361 FAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERL 420
HY C +L A L +EAEE+++K+P N+ + ++ +LLS CR G + M ERL
Sbjct: 478 LEHYGCFIDLLGRAGLLQEAEELVKKLPAQNNEIIVP--LYGALLSACRTYGNIDMGERL 535
Query: 421 AKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDL 474
A + + D S + L ++YA A +WEDV +VR MK + ++PG +++
Sbjct: 536 ATALAKVKSSDSSLHTLLASIYASADRWEDVRKVRNKMKDLGIKKVPGYSAIEV 589
Score = 162 bits (410), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 117/429 (27%), Positives = 195/429 (45%), Gaps = 64/429 (14%)
Query: 1 MKQLLQIQAHLITSGLFFNNSFWTIN-LLKHSAD--FGSPDYTVLVFKCINNPGTFCVNA 57
M QL QIQAH+ GL + T+N L+ S D G +Y +F I++P F N
Sbjct: 21 MSQLKQIQAHIFCVGLQQDRD--TLNKLMAFSMDSSLGDFNYANRIFNYIHDPSLFIYNL 78
Query: 58 VIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNG 117
+IKA+ S + + Q+ ++G P++YT+ + G V G H +K G
Sbjct: 79 MIKAFVKSGSFRSAISLFQQLREHGVWPDNYTYPYVLKGIGCIGEVREGEKVHAFVVKTG 138
Query: 118 VDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFD 177
++F+ V NS ++MY G ++ +F +M RD +SWN ++SG+VR A +++
Sbjct: 139 LEFDPYVCNSFMDMYAELGLVEGFTQVFEEMPDRDAVSWNIMISGYVRCKRFEEAVDVYR 198
Query: 178 IMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNE 237
M W +S + N+ T+ S L+AC
Sbjct: 199 RM-------WT-----------------------ESNEKPNEATVVSTLSACAVLRNLEL 228
Query: 238 GRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCI 297
G+ +H Y + + L I+ AL+D+Y KC V VA+ +FD+M +N+ CW +M+ G+ I
Sbjct: 229 GKEIHDY-IASELDLTTIMGNALLDMYCKCGHVSVAREIFDAMTVKNVNCWTSMVTGYVI 287
Query: 298 HGK-----------PEEGIKLFTALVNGTVAGG---------------SISPDEITFIGV 331
G+ P I L+TA++NG V + PD+ + +
Sbjct: 288 CGQLDQARNLFERSPSRDIVLWTAMINGYVQFNRFEETIALFGEMQIRGVKPDKFIVVTL 347
Query: 332 ICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDN 391
+ C ++ L +G K+ ID +IK + + +YA E++ EI + E
Sbjct: 348 LTGCAQSGALEQG-KWIHNYIDENRIKVDAVVGTALIEMYAKCGCIEKSFEIFNGLKE-K 405
Query: 392 DNMSFESIM 400
D S+ SI+
Sbjct: 406 DTTSWTSII 414
>gi|297821407|ref|XP_002878586.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297324425|gb|EFH54845.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 786
Score = 252 bits (644), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 140/454 (30%), Positives = 241/454 (53%), Gaps = 16/454 (3%)
Query: 35 GSPDYTVLVFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFM-PNSYTFVSL 93
G D + F+ + N++I Y+ + + + +M+++ + P+ +T S+
Sbjct: 226 GQMDLAMAQFEQMAERDIVTWNSMISGYNQRGYDLRALDMFSKMLRDSMLSPDRFTLASV 285
Query: 94 FGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDL 153
+CA + G H + G D V+N+LI+MY G ++ AR + Q +DL
Sbjct: 286 LSACANLEKLCIGEQIHSHIVTTGFDISGIVLNALISMYSRCGGVETARRLIEQRGTKDL 345
Query: 154 I--SWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMM 211
+ +++ G+++ GDM+ A +FD + +R+VV+W MI GY + G G ++ LFR M+
Sbjct: 346 KIEGFTALLDGYIKLGDMNEAKNIFDSLKDRDVVAWTAMIVGYEQHGLYGEAINLFRSMV 405
Query: 212 KSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVE 271
R N T+A++L+ A G+ +HG V++ ++ + ALI +Y+K +
Sbjct: 406 GEEQRPNSYTLAAMLSVASSLASLGHGKQIHGSAVKSGEIYSVSVSNALITMYAKAGSIT 465
Query: 272 VAQRVFDSM-ADRNLVCWNAMILGHCIHGKPEEGIKLF-TALVNGTVAGGSISPDEITFI 329
A R FD + +R+ V W +MI+ HG EE ++LF T L+ G + PD IT++
Sbjct: 466 SASRAFDLIRCERDTVSWTSMIIALAQHGHAEEALELFETMLMEG------LRPDHITYV 519
Query: 330 GVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPE 389
GV AC A L+ +GR+YF M D KI P +HY CM +L+ A L +EA+E + KMP
Sbjct: 520 GVFSACTHAGLVNQGRQYFDMMKDVDKIIPTLSHYACMVDLFGRAGLLQEAQEFIEKMPI 579
Query: 390 DNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWE 449
+ D + W SLLS CR + + + A+ + ++P++ Y L N+Y+ G+WE
Sbjct: 580 EPD-----VVTWGSLLSACRVYKNIDLGKVAAERLLLLEPENSGAYSALANLYSACGKWE 634
Query: 450 DVARVRELMKKRRMGRMPGCRLVDLKEVVEKLKV 483
+ A++R+ MK R+ + G +++K V V
Sbjct: 635 EAAKIRKSMKDGRVKKEQGFSWIEVKHKVHAFGV 668
Score = 162 bits (410), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 127/499 (25%), Positives = 214/499 (42%), Gaps = 72/499 (14%)
Query: 26 NLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMP 85
+L A G D + F + + +I Y N + + +M++ G P
Sbjct: 85 TVLSAYAKRGDMDSSCEFFDRLPQRDSVSWTTMIVGYKNIGQYHKAIRIMGEMMREGIEP 144
Query: 86 NSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMF 145
+ +T ++ S A T C+E G H +K G+ + V NSL+NMY G A+ +F
Sbjct: 145 SQFTLTNVLASVAATRCLETGKKVHSFIVKLGLRGNVSVSNSLLNMYAKCGDPMMAKVVF 204
Query: 146 VQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLK 205
+M +D+ SWN++++ H++ G M A F+ M ER++V+WN MISGY++ G +L
Sbjct: 205 DRMVVKDISSWNAMIALHMQVGQMDLAMAQFEQMAERDIVTWNSMISGYNQRGYDLRALD 264
Query: 206 LFREMMKSGFRGNDK-TMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLY 264
+F +M++ D+ T+ASVL+AC + G +H + V T + I+ ALI +Y
Sbjct: 265 MFSKMLRDSMLSPDRFTLASVLSACANLEKLCIGEQIHSHIVTTGFDISGIVLNALISMY 324
Query: 265 SKCQKVEVAQR---------------------------------VFDSMADRNLVCWNAM 291
S+C VE A+R +FDS+ DR++V W AM
Sbjct: 325 SRCGGVETARRLIEQRGTKDLKIEGFTALLDGYIKLGDMNEAKNIFDSLKDRDVVAWTAM 384
Query: 292 ILGHCIHGKPEEGIKLFTALV--------------------------NGTVAGGSISPDE 325
I+G+ HG E I LF ++V + G ++ E
Sbjct: 385 IVGYEQHGLYGEAINLFRSMVGEEQRPNSYTLAAMLSVASSLASLGHGKQIHGSAVKSGE 444
Query: 326 ITFIGVICACV----RAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAE 381
I + V A + +A +T + F D + + + + M A EEA
Sbjct: 445 IYSVSVSNALITMYAKAGSITSASRAF----DLIRCERDTVSWTSMIIALAQHGHAEEAL 500
Query: 382 EILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDP--QDFSRYQFLL 439
E+ M + + + I +V + S C G V + D+D S Y ++
Sbjct: 501 ELFETML--MEGLRPDHITYVGVFSACTHAGLVNQGRQYFDMMKDVDKIIPTLSHYACMV 558
Query: 440 NVYAVAGQWEDVARVRELM 458
+++ AG ++ E M
Sbjct: 559 DLFGRAGLLQEAQEFIEKM 577
Score = 141 bits (355), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 77/276 (27%), Positives = 138/276 (50%), Gaps = 35/276 (12%)
Query: 108 MCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSG 167
+ H +K+G+ F + +MN+L+N+Y G AR +F +M R SWN+++S + + G
Sbjct: 35 LVHCRVIKSGLVFSVYLMNNLMNVYSKTGYALHARKLFDEMPLRTAFSWNTVLSAYAKRG 94
Query: 168 DMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLT 227
DM ++ E FD +P+R+ VSW MI GY G ++++ EMM+ G + T+ +VL
Sbjct: 95 DMDSSCEFFDRLPQRDSVSWTTMIVGYKNIGQYHKAIRIMGEMMREGIEPSQFTLTNVLA 154
Query: 228 ACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFD--------- 278
+ + G+ VH + V+ L+ N+ + +L+++Y+KC +A+ VFD
Sbjct: 155 SVAATRCLETGKKVHSFIVKLGLRGNVSVSNSLLNMYAKCGDPMMAKVVFDRMVVKDISS 214
Query: 279 ----------------------SMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTV 316
MA+R++V WN+MI G+ G + +F+ ++ ++
Sbjct: 215 WNAMIALHMQVGQMDLAMAQFEQMAERDIVTWNSMISGYNQRGYDLRALDMFSKMLRDSM 274
Query: 317 AGGSISPDEITFIGVICACVRAELLTEGRKYFRQMI 352
+SPD T V+ AC E L G + ++
Sbjct: 275 ----LSPDRFTLASVLSACANLEKLCIGEQIHSHIV 306
>gi|347954528|gb|AEP33764.1| organelle transcript processing 82, partial [Iberis amara]
Length = 666
Score = 252 bits (644), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 136/432 (31%), Positives = 226/432 (52%), Gaps = 45/432 (10%)
Query: 56 NAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALK 115
NA+I Y+ + + + + M+K P+ T V++ +CA++G +E G H
Sbjct: 192 NAMISGYAETGNYKEALELFKDMMKTNVRPDESTMVTVVSACAQSGSIELGRQVHSWIDD 251
Query: 116 NGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHEL 175
+G L ++N+LI++Y + G++ A L
Sbjct: 252 HGFGSNLKIVNALIDLYS-------------------------------KCGELETACGL 280
Query: 176 FDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARF 235
F+ +P ++V+SWN +I GY+ +L LF+EM++SG ND TM S+L AC
Sbjct: 281 FEGLPYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAI 340
Query: 236 NEGRSVHGYTVR--TSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMIL 293
+ GR +H Y + + L T+LID+Y+KC +E A +VF+S+ ++L WNAMI
Sbjct: 341 DIGRWIHVYIDKRLKGVANASSLRTSLIDMYAKCGDIEAAHQVFNSILHKSLSSWNAMIF 400
Query: 294 GHCIHGKPEEGIKLFTAL-VNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMI 352
G +HG+ + +F+ + NG I PD+ITF+G++ AC + +L GR FR M
Sbjct: 401 GFAMHGRADASFDIFSRMRKNG------IEPDDITFVGLLSACSHSGMLDLGRHIFRSMT 454
Query: 353 DFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQG 412
YK+ P HY CM +L + L +EAEE++ M M + ++W SLL C+ G
Sbjct: 455 QDYKMTPKLEHYGCMIDLLGHSGLFKEAEEMINTM-----EMEPDGVIWCSLLKACKMHG 509
Query: 413 AVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLV 472
V + E A++ + ++P++ Y L N+YA AG+W +VA R L+ + M ++PGC +
Sbjct: 510 NVELGESFAQNLIKIEPENPGSYVLLSNIYATAGRWNEVANTRALLNDKGMKKVPGCSSI 569
Query: 473 DLKEVVEKLKVG 484
++ VV + +G
Sbjct: 570 EIDSVVHEFIIG 581
Score = 209 bits (532), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 114/347 (32%), Positives = 189/347 (54%), Gaps = 7/347 (2%)
Query: 1 MKQLLQIQAHLITSGLFFNNSFWT--INLLKHSADFGSPDYTVLVFKCINNPGTFCVNAV 58
++ L I A +I +GL N + I S F Y + VF+ I P N +
Sbjct: 3 LQSLRMIHAQMIKTGLHNTNYALSKLIEFCILSPHFDGLPYAISVFETIQEPNLLIWNTM 62
Query: 59 IKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGV 118
+ ++ S P + Y+ MI G +PNSYTF L SCAK+ + G HG LK G
Sbjct: 63 FRGHALSSDPVSALKLYVCMISLGLLPNSYTFPFLLKSCAKSKAFKEGQQIHGHVLKLGC 122
Query: 119 DFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDI 178
D +L V SLI+MY G ++ A +F + RD++S+ +++ G+ G + A ++FD
Sbjct: 123 DLDLYVHTSLISMYVQNGRLEDAHKVFDESPHRDVVSYTALIKGYASRGYIENAQKMFDE 182
Query: 179 MPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEG 238
+P ++VVSWN MISGY+++GN +L+LF++MMK+ R ++ TM +V++AC +S G
Sbjct: 183 IPVKDVVSWNAMISGYAETGNYKEALELFKDMMKTNVRPDESTMVTVVSACAQSGSIELG 242
Query: 239 RSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIH 298
R VH + N+ + ALIDLYSKC ++E A +F+ + ++++ WN +I G+
Sbjct: 243 RQVHSWIDDHGFGSNLKIVNALIDLYSKCGELETACGLFEGLPYKDVISWNTLIGGYTHM 302
Query: 299 GKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGR 345
+E + LF ++ +P+++T + ++ AC + GR
Sbjct: 303 NLYKEALLLFQEMLR-----SGETPNDVTMLSILPACAHLGAIDIGR 344
Score = 99.4 bits (246), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 62/240 (25%), Positives = 113/240 (47%), Gaps = 27/240 (11%)
Query: 175 LFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSAR 234
+F+ + E N++ WN M G++ S +P +LKL+ M+ G N T +L +C +S
Sbjct: 47 VFETIQEPNLLIWNTMFRGHALSSDPVSALKLYVCMISLGLLPNSYTFPFLLKSCAKSKA 106
Query: 235 FNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILG 294
F EG+ +HG+ ++ ++ + T+LI +Y + ++E A +VFD R++V + A+I G
Sbjct: 107 FKEGQQIHGHVLKLGCDLDLYVHTSLISMYVQNGRLEDAHKVFDESPHRDVVSYTALIKG 166
Query: 295 HCIHGKPEEGIKLF-----------TALVNGTVAGGS---------------ISPDEITF 328
+ G E K+F A+++G G+ + PDE T
Sbjct: 167 YASRGYIENAQKMFDEIPVKDVVSWNAMISGYAETGNYKEALELFKDMMKTNVRPDESTM 226
Query: 329 IGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMP 388
+ V+ AC ++ + GR+ ID + N + +LY+ E A + +P
Sbjct: 227 VTVVSACAQSGSIELGRQ-VHSWIDDHGFGSNLKIVNALIDLYSKCGELETACGLFEGLP 285
Score = 43.1 bits (100), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 54/215 (25%), Positives = 92/215 (42%), Gaps = 18/215 (8%)
Query: 19 NNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQM 78
N S +L+ A G + VF I + NA+I ++ D + +M
Sbjct: 359 NASSLRTSLIDMYAKCGDIEAAHQVFNSILHKSLSSWNAMIFGFAMHGRADASFDIFSRM 418
Query: 79 IKNGFMPNSYTFVSLFGSCAKTGCVERG-GMCHGLALKNGVDFELPVMNSLINMYGCFGA 137
KNG P+ TFV L +C+ +G ++ G + + + +L +I++ G G
Sbjct: 419 RKNGIEPDDITFVGLLSACSHSGMLDLGRHIFRSMTQDYKMTPKLEHYGCMIDLLGHSGL 478
Query: 138 MDCARNMF--VQMSPRDLISWNSIVS-----GHVRSGDMSAAHELFDIMPERNVVSWNIM 190
A M ++M P D + W S++ G+V G+ S A L I PE N S+ ++
Sbjct: 479 FKEAEEMINTMEMEP-DGVIWCSLLKACKMHGNVELGE-SFAQNLIKIEPE-NPGSYVLL 535
Query: 191 ISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASV 225
+ Y+ +G + E+ + NDK M V
Sbjct: 536 SNIYATAGR-------WNEVANTRALLNDKGMKKV 563
>gi|224131262|ref|XP_002328495.1| predicted protein [Populus trichocarpa]
gi|222838210|gb|EEE76575.1| predicted protein [Populus trichocarpa]
Length = 580
Score = 252 bits (644), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 143/481 (29%), Positives = 250/481 (51%), Gaps = 15/481 (3%)
Query: 1 MKQLLQIQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIK 60
+ Q+ QI I +GLF + + L+K + G VF+ + +P N +I
Sbjct: 79 ISQVKQIHCQAIVTGLF-SFGYLQNTLIKVYLENGLVRLAHQVFEKMPSPDIVSFNVMIV 137
Query: 61 AYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLA--LKNGV 118
Y+ + + + +M+ G P+ +T + L SC + G V+ G HG K +
Sbjct: 138 GYAKKGFGLEAMRLFHEMVGLGLEPDEFTILGLLVSCGQLGNVKFGKAVHGWMERRKPTI 197
Query: 119 DFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDI 178
L + N+L++MY ++ A F + +D++SWN IV+G + G++ A F
Sbjct: 198 SSNLILGNALLDMYVKCQKVELALRTFGALKEKDIVSWNMIVAGCAKVGELEQARLFFYQ 257
Query: 179 MPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEG 238
MP R++VSWN +++GY+ G+ +L +M+ + TM S+++A S ++G
Sbjct: 258 MPCRDIVSWNSLVTGYACRGDFASVKELIVDMVMEKVIPDTVTMISLVSAATESGALDQG 317
Query: 239 RSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIH 298
R HG+ +R +K + L +ALID+Y KC +E A RVF + +++ W MI G H
Sbjct: 318 RWAHGWVIRMQIKLDAFLGSALIDMYCKCGSIERASRVFKEINKKDVTVWTTMITGLAFH 377
Query: 299 GKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIK 358
G + ++LF+ + +SPD++TF+ V+ AC + L+ +G K F M D Y I+
Sbjct: 378 GYGSKALELFSEMQE------DVSPDDVTFVSVLSACSHSGLVDQGIKVFSSMTD-YGIE 430
Query: 359 PNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVE 418
P HY C+ +L A + EA++I+ +MP M +W ++L+ C+ QG V + E
Sbjct: 431 PGVEHYGCLVDLLARSGRLSEAKDIIDQMP-----MKPSRSIWGAMLNACQAQGDVELAE 485
Query: 419 RLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLKEVV 478
++ +++DP++ Y L N+YA +G+W ++RE M+ R + + GC V + VV
Sbjct: 486 IASRELLNLDPEEEGGYTLLSNIYAASGRWSYSKKIRETMESRGVKKTAGCSSVVVDGVV 545
Query: 479 E 479
Sbjct: 546 H 546
>gi|224126363|ref|XP_002329535.1| predicted protein [Populus trichocarpa]
gi|222870244|gb|EEF07375.1| predicted protein [Populus trichocarpa]
Length = 617
Score = 252 bits (644), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 157/526 (29%), Positives = 247/526 (46%), Gaps = 73/526 (13%)
Query: 1 MKQLLQIQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIK 60
+KQ QI L GLF + + + K A S + V ++ I P F N +++
Sbjct: 71 IKQFNQIHTQLTVLGLFQHPFAASRYIKKLCACLNSVSHCVSLYNHIEEPDAFMCNTIMR 130
Query: 61 AYSNSCVPDQGVVFYLQ-MIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALK---- 115
++ N P + FY + MI +PN YTF + CA G + G H L +K
Sbjct: 131 SFVNVNDPFGALRFYYEKMIAKWVLPNHYTFPLVAKVCADIGSLREGQKVHALVVKFGFE 190
Query: 116 ---------------------------NGVDFELPVMNSLINMYGCFGAMDCARNMFVQM 148
NG +L NS+I+ Y G + AR +F +M
Sbjct: 191 LDLFVRNSFIRFYSVCGRTSDARMVFDNGFVLDLVSWNSMIDGYVKNGELGLAREIFDEM 250
Query: 149 SPRDLISWNSIVSGHVRSGDMSAAHELFDIMPER-------------------------- 182
RD+ +WNS++SG+V GDM AA LFD MP R
Sbjct: 251 YERDIFTWNSMISGYVGVGDMEAARGLFDKMPSRDVVSWNCMIDGFARIKDVSMAAKFFD 310
Query: 183 -----NVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNE 237
NVVSWN+M++ Y + L+ F M+ F ++ ++ SVLTAC ++
Sbjct: 311 EMPLRNVVSWNVMLALYLRCKKYSDCLRFFDMMVGGDFVPDEASLVSVLTACAELKMLDQ 370
Query: 238 GRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCI 297
G+ VH Y +KP+++L TAL+ +Y+KC +++A+ VFD M ++++V WN+MI+G+ I
Sbjct: 371 GKWVHSYMKDNGIKPDMLLSTALLTMYAKCGAMDLAREVFDKMPEKSVVSWNSMIIGYGI 430
Query: 298 HGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKI 357
HG ++ +++F + G P++ TF+ V+ AC + ++ G YF M Y+I
Sbjct: 431 HGHGDKALEMFREM-----EKGGPMPNDATFMSVLSACSHSGMVWNGWWYFDLMHRKYRI 485
Query: 358 KPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMV 417
+P HY C+ +L A L E +E++ RK + E +W LLS CR
Sbjct: 486 QPKPEHYGCLVDLLGQAGLKEPSEDLTRKT-----HTEVEPTLWGDLLSACRAHCISEPG 540
Query: 418 ERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRM 463
E LAK + + P Y L N Y G+W+DV +R +K + +
Sbjct: 541 EILAKQLIKLFPNHVVPYLLLSNTYVAEGRWDDVENLRMTLKNKTL 586
>gi|224135349|ref|XP_002322051.1| predicted protein [Populus trichocarpa]
gi|222869047|gb|EEF06178.1| predicted protein [Populus trichocarpa]
Length = 924
Score = 252 bits (644), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 148/485 (30%), Positives = 251/485 (51%), Gaps = 47/485 (9%)
Query: 5 LQIQAHLITSGLFFNNSFWTINL----LKHSADFGSPDYTVLVFKCINNPGTFCVNAVIK 60
LQ+++ G F + F + L + A G+ + VF I + NA+I
Sbjct: 365 LQLRSLKELHGYSFRHCFQHVELSNAFILAYAKCGALNSAEKVFHGIGDKTVSSWNALIG 424
Query: 61 AYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDF 120
++ + P + + QM +G P+ +T SL +CA ++ G HG L+NG++
Sbjct: 425 GHAQNGDPRKALHLLFQMTYSGQQPDWFTISSLLLACAHLKSLQYGKEIHGYVLRNGLET 484
Query: 121 ELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMP 180
+ V SL++ Y + G S+A LFD M
Sbjct: 485 DFFVGTSLLSHY-------------------------------IHCGKASSARVLFDRMK 513
Query: 181 ERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRS 240
++N+VSWN MISGYS++G P SL LFR+ + G + ++ + SV AC + + G+
Sbjct: 514 DKNLVSWNAMISGYSQNGLPYESLALFRKSLSEGIQSHEIAIVSVFGACSQLSALRLGKE 573
Query: 241 VHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGK 300
HGY ++ + + ++ID+Y+K ++ +++VFD + D+N+ WNA+I+ H IHG
Sbjct: 574 AHGYVLKALQTEDAFVGCSIIDMYAKSGCIKESRKVFDGLKDKNVASWNAIIVAHGIHGH 633
Query: 301 PEEGIKLFTALVN-GTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKP 359
+E I+L+ + G + PD T+IG++ AC A L+ EG KYF++M +F I+P
Sbjct: 634 GKEAIELYERMKKVGQM------PDRFTYIGILMACGHAGLVEEGLKYFKEMQNFNLIEP 687
Query: 360 NFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVER 419
HY C+ ++ A A ++A ++ +MPE+ DN +W SLL CR GA+ + E+
Sbjct: 688 KLEHYACLIDMLARAGRLDDALRLVNEMPEEADNR-----IWSSLLRSCRTFGALEIGEK 742
Query: 420 LAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLKEVVE 479
+AK ++++P Y L N+YA G+W+ V RVR++MK+ + + GC +++ V
Sbjct: 743 VAKKLLELEPDKAENYVLLSNLYAGLGKWDGVRRVRQMMKEIGLQKDAGCSWIEVGGRVY 802
Query: 480 KLKVG 484
VG
Sbjct: 803 SFVVG 807
Score = 122 bits (307), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 83/322 (25%), Positives = 147/322 (45%), Gaps = 36/322 (11%)
Query: 17 FFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYL 76
+ N+ L+K A GSP + LVF + NA++ Y+ + + V ++
Sbjct: 75 YRNDYVLNTRLIKMYAMCGSPLDSRLVFDNMETKNLIQWNALVSGYTRNGLYGDVVKVFM 134
Query: 77 QMIKN-GFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCF 135
++ + F P+++TF S+ +C V G + HG+ +K G+ ++ V N+L+ MYG
Sbjct: 135 DLVSDTDFQPDNFTFPSVIKACGGILDVRLGEVIHGMVIKMGLVLDVFVGNALVGMYGKC 194
Query: 136 GAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYS 195
GA+D A +F M +L+SWNS MI +S
Sbjct: 195 GAVDEAMKVFDFMPETNLVSWNS-------------------------------MICAFS 223
Query: 196 KSGNPGCSLKLFREMM-KSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNI 254
++G S L EM+ + G + T+ ++L C + G +HG V+ L +
Sbjct: 224 ENGFSRDSFDLLMEMLGEEGLLPDVVTVVTILPVCAGEGEVDIGMGIHGLAVKLGLSEEV 283
Query: 255 ILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNG 314
+++ A++ +YSKC + AQ F ++N+V WN MI + G E L +
Sbjct: 284 MVNNAMVYMYSKCGYLNEAQMSFVKNNNKNVVSWNTMISAFSLEGDVNEAFNLLQEM--- 340
Query: 315 TVAGGSISPDEITFIGVICACV 336
+ G + +E+T + V+ AC+
Sbjct: 341 QIQGEEMKANEVTILNVLPACL 362
Score = 117 bits (294), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 90/337 (26%), Positives = 162/337 (48%), Gaps = 42/337 (12%)
Query: 35 GSPDYTVLVFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMI-KNGFMPNSYTFVSL 93
G+ D + VF + N++I A+S + ++M+ + G +P+ T V++
Sbjct: 195 GAVDEAMKVFDFMPETNLVSWNSMICAFSENGFSRDSFDLLMEMLGEEGLLPDVVTVVTI 254
Query: 94 FGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDL 153
CA G V+ G HGLA+K G+ E+ V N+++ MY G ++ A+ FV+ + +++
Sbjct: 255 LPVCAGEGEVDIGMGIHGLAVKLGLSEEVMVNNAMVYMYSKCGYLNEAQMSFVKNNNKNV 314
Query: 154 ISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKS 213
+SWN+++S GD++ E F+++ E + I G E MK+
Sbjct: 315 VSWNTMISAFSLEGDVN---EAFNLLQE-------MQIQG---------------EEMKA 349
Query: 214 GFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVA 273
N+ T+ +VL AC + + +HGY+ R + ++ L A I Y+KC + A
Sbjct: 350 ----NEVTILNVLPACLDKLQLRSLKELHGYSFRHCFQ-HVELSNAFILAYAKCGALNSA 404
Query: 274 QRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVIC 333
++VF + D+ + WNA+I GH +G P + + L L T +G PD T ++
Sbjct: 405 EKVFHGIGDKTVSSWNALIGGHAQNGDPRKALHL---LFQMTYSGQ--QPDWFTISSLLL 459
Query: 334 ACVRAELLTEGRKYFRQMI------DFYKIKPNFAHY 364
AC + L G++ ++ DF+ +HY
Sbjct: 460 ACAHLKSLQYGKEIHGYVLRNGLETDFFVGTSLLSHY 496
Score = 68.2 bits (165), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 48/173 (27%), Positives = 81/173 (46%), Gaps = 6/173 (3%)
Query: 220 KTMASVLTACGRSARFNEGRSVHGY-TVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFD 278
+ + +L ACG GR +H + + T + + +L+T LI +Y+ C ++ VFD
Sbjct: 44 EAIGLLLQACGNQKDIETGRRLHKFVSDSTHYRNDYVLNTRLIKMYAMCGSPLDSRLVFD 103
Query: 279 SMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRA 338
+M +NL+ WNA++ G+ +G + +K+F LV+ T PD TF VI AC
Sbjct: 104 NMETKNLIQWNALVSGYTRNGLYGDVVKVFMDLVSDT----DFQPDNFTFPSVIKACGGI 159
Query: 339 ELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDN 391
+ G +I + F + +Y +EA ++ MPE N
Sbjct: 160 LDVRLGEVIHGMVIKMGLVLDVFVGN-ALVGMYGKCGAVDEAMKVFDFMPETN 211
>gi|297745510|emb|CBI40590.3| unnamed protein product [Vitis vinifera]
Length = 495
Score = 252 bits (643), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 148/485 (30%), Positives = 238/485 (49%), Gaps = 60/485 (12%)
Query: 1 MKQLLQIQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIK 60
M +L QIQA+ + +G+ ++LL+ S Y +F I P F N +I+
Sbjct: 1 MNRLKQIQAYTLRNGIEHTKQL-IVSLLQ----IPSIPYAHKLFDFIPKPTVFLYNKLIQ 55
Query: 61 AYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDF 120
AYS+ Q Y QM G PN ++F LF +CA ++G M H +K+G
Sbjct: 56 AYSSHGPHHQCFSLYTQMCLQGCSPNEHSFTFLFSACASLSSHQQGRMLHTHFVKSGFGC 115
Query: 121 ELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMP 180
++ + +L++MY G + AR F +M+ RD+ +WNS+++G+ R GD+ A ELF +MP
Sbjct: 116 DVFALTALVDMYAKLGLLSLARKQFDEMTVRDVPTWNSMIAGYARCGDLEGALELFRLMP 175
Query: 181 ERNVVSWNIMISGYSKSGNPGCSLKLFREM-MKSGFRGNDKTMASVLTACGRSARFNEGR 239
RNV SW MISGY+++G +L +F M ++ R N+ T+ASVL AC G
Sbjct: 176 ARNVTSWTAMISGYAQNGQYAKALSMFLMMEEETEMRPNEVTLASVLPACANLGALEVGE 235
Query: 240 SVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSM-ADRNLVCWNAMILGHCIH 298
+ Y N+ + AL+++Y++C +++ A VF+ + RNL WN+MI+G +H
Sbjct: 236 RIEVYARGNGYFKNLYVSNALLEMYARCGRIDKAWGVFEEIDGRRNLCSWNSMIMGLAVH 295
Query: 299 GKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIK 358
G+ +E I+LF ++ A PD++TF+GV+ AC ++ EG+ +F M + I
Sbjct: 296 GRCDEAIELFYKMLREGAA-----PDDVTFVGVLLACTHGGMVVEGQHFFESMERDFSIA 350
Query: 359 PNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVE 418
P HY CM +L L E
Sbjct: 351 PKLEHYGCMVDLLGPGALFE---------------------------------------- 370
Query: 419 RLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLKEVV 478
++P + Y L N+YA AG+W+ VAR+R+LMK ++ + G ++ +
Sbjct: 371 --------LEPSNPGNYVILSNIYATAGRWDGVARLRKLMKGGKITKAAGYSFIEEGGHI 422
Query: 479 EKLKV 483
K V
Sbjct: 423 HKFIV 427
>gi|224115100|ref|XP_002332237.1| predicted protein [Populus trichocarpa]
gi|222831850|gb|EEE70327.1| predicted protein [Populus trichocarpa]
Length = 444
Score = 252 bits (643), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 129/353 (36%), Positives = 207/353 (58%), Gaps = 11/353 (3%)
Query: 148 MSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLF 207
M + L+S ++++ + + G + A LFD + ER+ + WN+MI GY++ G P L LF
Sbjct: 1 MPEKSLVSLTAMITCYAKYGMIDEARVLFDGLEERDAICWNVMIDGYAQHGLPNEGLLLF 60
Query: 208 REMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKC 267
R+M+ + R N+ T+ +VL+ACG++ GR VH Y + N+ + T+LID+YSKC
Sbjct: 61 RQMLNAKVRPNEVTVLAVLSACGQTGALETGRWVHSYIENNGIGINVRVGTSLIDMYSKC 120
Query: 268 QKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEIT 327
+E A+ VF+ ++++++V WN+M++G+ +HG ++ ++LF + + G P +IT
Sbjct: 121 GSLEDARLVFERISNKDVVAWNSMVVGYAMHGFSQDALRLFKEM---CMIG--YQPTDIT 175
Query: 328 FIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKM 387
FIGV+ AC A L++EG K+F M D Y I+P HY CM NL A EEA E+++ M
Sbjct: 176 FIGVLNACSHAGLVSEGWKFFYSMKDEYGIEPKVEHYGCMVNLLGRAGYLEEAYELVKNM 235
Query: 388 PEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQ 447
D D ++W +LL CR G +A+ E++A+ V + + Y L N+YA AG
Sbjct: 236 EIDQD-----PVLWGTLLGACRLHGNIALGEQIAEYLVSQNLANSGTYVLLSNIYAAAGN 290
Query: 448 WEDVARVRELMKKRRMGRMPGCRLVDLKEVVEKLKVGHFWRGGMKEEVNKMME 500
WE VARVR LMK+ + PGC +++ V + G R E+ +M+E
Sbjct: 291 WEGVARVRTLMKESGFEKEPGCSSIEVNNKVHEFLAGDL-RHPKSREIYEMLE 342
Score = 110 bits (275), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 73/289 (25%), Positives = 134/289 (46%), Gaps = 35/289 (12%)
Query: 32 ADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFV 91
A +G D ++F + C N +I Y+ +P++G++ + QM+ PN T +
Sbjct: 17 AKYGMIDEARVLFDGLEERDAICWNVMIDGYAQHGLPNEGLLLFRQMLNAKVRPNEVTVL 76
Query: 92 SLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPR 151
++ +C +TG +E G H NG+ + V SLI+MY G+++ AR +F ++S +
Sbjct: 77 AVLSACGQTGALETGRWVHSYIENNGIGINVRVGTSLIDMYSKCGSLEDARLVFERISNK 136
Query: 152 DLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMM 211
D+++WNS M+ GY+ G +L+LF+EM
Sbjct: 137 DVVAWNS-------------------------------MVVGYAMHGFSQDALRLFKEMC 165
Query: 212 KSGFRGNDKTMASVLTACGRSARFNEG-RSVHGYTVRTSLKPNIILDTALIDLYSKCQKV 270
G++ D T VL AC + +EG + + ++P + +++L + +
Sbjct: 166 MIGYQPTDITFIGVLNACSHAGLVSEGWKFFYSMKDEYGIEPKVEHYGCMVNLLGRAGYL 225
Query: 271 EVAQRVFDSMA-DRNLVCWNAMILGHC-IHGKPEEGIKLFTALVNGTVA 317
E A + +M D++ V W + LG C +HG G ++ LV+ +A
Sbjct: 226 EEAYELVKNMEIDQDPVLWGTL-LGACRLHGNIALGEQIAEYLVSQNLA 273
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/215 (18%), Positives = 100/215 (46%), Gaps = 6/215 (2%)
Query: 7 IQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSNSC 66
+ +++ +G+ N T +L+ + GS + LVF+ I+N N+++ Y+
Sbjct: 94 VHSYIENNGIGINVRVGT-SLIDMYSKCGSLEDARLVFERISNKDVVAWNSMVVGYAMHG 152
Query: 67 VPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERG-GMCHGLALKNGVDFELPVM 125
+ + +M G+ P TF+ + +C+ G V G + + + G++ ++
Sbjct: 153 FSQDALRLFKEMCMIGYQPTDITFIGVLNACSHAGLVSEGWKFFYSMKDEYGIEPKVEHY 212
Query: 126 NSLINMYGCFGAMDCARNMFVQMS-PRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNV 184
++N+ G G ++ A + M +D + W +++ G+++ ++ + + +N+
Sbjct: 213 GCMVNLLGRAGYLEEAYELVKNMEIDQDPVLWGTLLGACRLHGNIALGEQIAEYLVSQNL 272
Query: 185 V---SWNIMISGYSKSGNPGCSLKLFREMMKSGFR 216
++ ++ + Y+ +GN ++ M +SGF
Sbjct: 273 ANSGTYVLLSNIYAAAGNWEGVARVRTLMKESGFE 307
>gi|147838932|emb|CAN63659.1| hypothetical protein VITISV_008415 [Vitis vinifera]
Length = 760
Score = 252 bits (643), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 142/440 (32%), Positives = 236/440 (53%), Gaps = 14/440 (3%)
Query: 49 NPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGM 108
P N +I +++S + + V+ +L M GF P+ T S+ + + G +
Sbjct: 212 QPNLISWNGMIAGFNHSGLYSEAVLMFLDMHLRGFEPDGTTISSVLPAVGDLEDLVMGIL 271
Query: 109 CHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGD 168
HG +K G+ + V ++LI+MYG +F QM D+ S N+ + G R+G
Sbjct: 272 IHGYVIKQGLVSDKCVSSALIDMYGKCSCTSEMSQVFDQMDHMDVGSCNAFIFGLSRNGQ 331
Query: 169 MSAAHELF----DIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMAS 224
+ ++ LF D E NVVSW MI+ S++G +L+LFREM +G + N T+
Sbjct: 332 VESSLRLFRQLKDQGMELNVVSWTSMIACCSQNGRDMEALELFREMQIAGVKPNSVTIPC 391
Query: 225 VLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRN 284
+L ACG A G++ H +++R + ++ + +ALID+Y+KC +++ ++ FD + +N
Sbjct: 392 LLPACGNIAALMHGKAAHCFSLRRGISTDVYVGSALIDMYAKCGRIQASRICFDGIPTKN 451
Query: 285 LVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEG 344
LVCWNA+I G+ +HGK +E +++F + PD I+F V+ AC ++ L EG
Sbjct: 452 LVCWNAVIAGYAMHGKAKEAMEIFDLMQR-----SGQKPDIISFTCVLSACSQSGLTEEG 506
Query: 345 RKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSL 404
YF M Y I+ HY CM L + A E+A ++R+MP + D + +W +L
Sbjct: 507 SYYFNSMSSKYGIEARVEHYACMVTLLSRAGKLEQAYAMIRRMPVNPD-----ACVWGAL 561
Query: 405 LSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMG 464
LS CR V++ E A+ +++P + Y L N+YA G W +V RVR++MK + +
Sbjct: 562 LSSCRVHNNVSLGEVAAEKLFELEPSNPGNYILLSNIYASKGMWNEVNRVRDMMKNKGLR 621
Query: 465 RMPGCRLVDLKEVVEKLKVG 484
+ PGC +++K V L G
Sbjct: 622 KNPGCSWIEVKNKVHMLLAG 641
Score = 155 bits (393), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 104/371 (28%), Positives = 179/371 (48%), Gaps = 11/371 (2%)
Query: 1 MKQLLQIQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIK 60
+ Q Q AH++ +GLF N++ LL H A+ LV + P F + +I
Sbjct: 29 LSQTRQAHAHILKTGLF-NDTHLATKLLSHYANNMCFADATLVLDLVPEPNVFSFSTLIY 87
Query: 61 AYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDF 120
A+S + + QM+ G MP++ S +CA ++ HG+A +G D
Sbjct: 88 AFSKFHQFHHALSTFSQMLTRGLMPDNRVLPSAVKACAGLSALKPARQVHGIASVSGFDS 147
Query: 121 ELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMP 180
+ V +SL++MY + A +F +M D++SW+++V+ + R G + A LF M
Sbjct: 148 DSFVQSSLVHMYIKCNQIRDAHRVFDRMFEPDVVSWSALVAAYARQGCVDEAKRLFSEMG 207
Query: 181 ER----NVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFN 236
+ N++SWN MI+G++ SG ++ +F +M GF + T++SVL A G
Sbjct: 208 DSGVQPNLISWNGMIAGFNHSGLYSEAVLMFLDMHLRGFEPDGTTISSVLPAVGDLEDLV 267
Query: 237 EGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHC 296
G +HGY ++ L + + +ALID+Y KC +VFD M ++ NA I G
Sbjct: 268 MGILIHGYVIKQGLVSDKCVSSALIDMYGKCSCTSEMSQVFDQMDHMDVGSCNAFIFGLS 327
Query: 297 IHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYK 356
+G+ E ++LF L + + + +++ +I C + E + FR+M
Sbjct: 328 RNGQVESSLRLFRQLKD-----QGMELNVVSWTSMIACCSQNGRDMEALELFREM-QIAG 381
Query: 357 IKPNFAHYWCM 367
+KPN C+
Sbjct: 382 VKPNSVTIPCL 392
Score = 41.2 bits (95), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 46/200 (23%), Positives = 90/200 (45%), Gaps = 11/200 (5%)
Query: 27 LLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPN 86
L+ A G + + F I C NAVI Y+ + + + M ++G P+
Sbjct: 427 LIDMYAKCGRIQASRICFDGIPTKNLVCWNAVIAGYAMHGKAKEAMEIFDLMQRSGQKPD 486
Query: 87 SYTFVSLFGSCAKTGCVERGGMC-HGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMF 145
+F + +C+++G E G + ++ K G++ + ++ + G ++ A M
Sbjct: 487 IISFTCVLSACSQSGLTEEGSYYFNSMSSKYGIEARVEHYACMVTLLSRAGKLEQAYAMI 546
Query: 146 VQMSPR-DLISWNSIVSG-----HVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGN 199
+M D W +++S +V G++ AA +LF++ P N ++ I++S S
Sbjct: 547 RRMPVNPDACVWGALLSSCRVHNNVSLGEV-AAEKLFELEPS-NPGNY-ILLSNIYASKG 603
Query: 200 PGCSLKLFREMMKS-GFRGN 218
+ R+MMK+ G R N
Sbjct: 604 MWNEVNRVRDMMKNKGLRKN 623
>gi|168056582|ref|XP_001780298.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162668246|gb|EDQ54857.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 986
Score = 252 bits (643), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 145/474 (30%), Positives = 239/474 (50%), Gaps = 43/474 (9%)
Query: 1 MKQLLQIQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIK 60
+K+ QIQ H+I +G ++ T LL A GS VF+ I+ NA+I
Sbjct: 429 LKRGQQIQDHIIEAGYGSDDRVRTA-LLSMYAKCGSLKDAHRVFEKISKQNVVAWNAMIT 487
Query: 61 AYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDF 120
AY D + + ++K G PNS TF S+ C + +E G H L +K G++
Sbjct: 488 AYVQHEQYDNALATFQALLKEGIKPNSSTFTSILNVCKSSDSLELGKWVHFLIMKAGLES 547
Query: 121 ELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMP 180
+L V N+L++M+ V GD+ +A LF+ MP
Sbjct: 548 DLHVSNALVSMF-------------------------------VNCGDLMSAKNLFNDMP 576
Query: 181 ERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRS 240
+R++VSWN +I+G+ + G + F+ M +SG + + T +L AC EGR
Sbjct: 577 KRDLVSWNTIIAGFVQHGKNQVAFDYFKMMQESGIKPDKITFTGLLNACASPEALTEGRR 636
Query: 241 VHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGK 300
+H + ++++ T LI +Y+KC +E A +VF + +N+ W +MI G+ HG+
Sbjct: 637 LHALITEAAFDCDVLVGTGLISMYTKCGSIEDAHQVFHKLPKKNVYSWTSMITGYAQHGR 696
Query: 301 PEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPN 360
+E ++LF + + PD ITF+G + AC A L+ EG +F+ M +F I+P
Sbjct: 697 GKEALELFYQMQQ-----EGVKPDWITFVGALSACAHAGLIEEGLHHFQSMKEF-NIEPR 750
Query: 361 FAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERL 420
HY CM +L+ A L EA E + KM + D S +W +LL C+ V + E+
Sbjct: 751 MEHYGCMVDLFGRAGLLNEAVEFIIKMQVEPD-----SRVWGALLGACQVHLNVELAEKA 805
Query: 421 AKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDL 474
A+ +++DP D + L N+YA AG W++VA++R++M R + + PG +++
Sbjct: 806 AQKKLELDPNDNGVFVILSNIYAAAGMWKEVAKMRKVMLDRGVVKKPGQSWIEV 859
Score = 151 bits (382), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 90/357 (25%), Positives = 162/357 (45%), Gaps = 37/357 (10%)
Query: 35 GSPDYTVLVFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLF 94
GS + + VF + A+I ++ D+ +F+ +MI++G PN TF+S+
Sbjct: 361 GSMEDALEVFDLVKGRNVVSWTAMIAGFAQHGRIDEAFLFFNKMIESGIEPNRVTFMSIL 420
Query: 95 GSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLI 154
G+C+ ++RG ++ G + V +L++MY
Sbjct: 421 GACSSPSALKRGQQIQDHIIEAGYGSDDRVRTALLSMYA--------------------- 459
Query: 155 SWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSG 214
+ G + AH +F+ + ++NVV+WN MI+ Y + +L F+ ++K G
Sbjct: 460 ----------KCGSLKDAHRVFEKISKQNVVAWNAMITAYVQHEQYDNALATFQALLKEG 509
Query: 215 FRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQ 274
+ N T S+L C S G+ VH ++ L+ ++ + AL+ ++ C + A+
Sbjct: 510 IKPNSSTFTSILNVCKSSDSLELGKWVHFLIMKAGLESDLHVSNALVSMFVNCGDLMSAK 569
Query: 275 RVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICA 334
+F+ M R+LV WN +I G HGK + F + I PD+ITF G++ A
Sbjct: 570 NLFNDMPKRDLVSWNTIIAGFVQHGKNQVAFDYFKMMQE-----SGIKPDKITFTGLLNA 624
Query: 335 CVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDN 391
C E LTEGR+ +I + + ++Y E+A ++ K+P+ N
Sbjct: 625 CASPEALTEGRR-LHALITEAAFDCDVLVGTGLISMYTKCGSIEDAHQVFHKLPKKN 680
Score = 148 bits (374), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 104/440 (23%), Positives = 193/440 (43%), Gaps = 51/440 (11%)
Query: 6 QIQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSNS 65
+I H+ SG+ + W L+ A G+ +F + + N ++ Y
Sbjct: 131 RIYNHIKKSGVQPDIFMWN-TLINMYAKCGNTISAKQIFDDMREKDVYSWNLLLGGYVQH 189
Query: 66 CVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVM 125
+ ++ + QM+++ P+ TFVS+ +CA V++G + L LK G D +L V
Sbjct: 190 GLYEEAFKLHEQMVQDSVKPDKRTFVSMLNACADARNVDKGRELYNLILKAGWDTDLFVG 249
Query: 126 NSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVV 185
+LINM H++ GD+ A ++FD +P R++V
Sbjct: 250 TALINM-------------------------------HIKCGDIGDATKVFDNLPTRDLV 278
Query: 186 SWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYT 245
+W MI+G ++ G + LF+ M + G + + S+L AC +G+ VH
Sbjct: 279 TWTSMITGLARHGRFKQACNLFQRMEEEGVQPDKVAFVSLLRACNHPEALEQGKKVHARM 338
Query: 246 VRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGI 305
I + TA++ +Y+KC +E A VFD + RN+V W AMI G HG+ +E
Sbjct: 339 KEVGWDTEIYVGTAILSMYTKCGSMEDALEVFDLVKGRNVVSWTAMIAGFAQHGRIDEAF 398
Query: 306 KLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYW 365
F ++ I P+ +TF+ ++ AC L G++ +I+ +
Sbjct: 399 LFFNKMIE-----SGIEPNRVTFMSILGACSSPSALKRGQQIQDHIIEAGYGSDDRVRT- 452
Query: 366 CMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLC----RFQGAVAMVERLA 421
+ ++YA ++A + K+ + N + W ++++ ++ A+A + L
Sbjct: 453 ALLSMYAKCGSLKDAHRVFEKISKQN------VVAWNAMITAYVQHEQYDNALATFQALL 506
Query: 422 KSFVDMDPQDFSRYQFLLNV 441
K + + F+ +LNV
Sbjct: 507 KEGIKPNSSTFTS---ILNV 523
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 53/249 (21%), Positives = 121/249 (48%), Gaps = 16/249 (6%)
Query: 188 NIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVR 247
N +++ SK+G ++++ + S + +T +++L C + +G ++ + +
Sbjct: 79 NAVLNRLSKAGQFNEAMQVLERVDSSHIQIYRQTYSALLQLCIKFKNLGDGERIYNHIKK 138
Query: 248 TSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKL 307
+ ++P+I + LI++Y+KC A+++FD M ++++ WN ++ G+ HG EE KL
Sbjct: 139 SGVQPDIFMWNTLINMYAKCGNTISAKQIFDDMREKDVYSWNLLLGGYVQHGLYEEAFKL 198
Query: 308 FTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCM 367
+V S+ PD+ TF+ ++ AC A + +GR+ + ++ F +
Sbjct: 199 HEQMVQ-----DSVKPDKRTFVSMLNACADARNVDKGRELYNLILKAGWDTDLFVGT-AL 252
Query: 368 ANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLC----RFQGAVAMVERLAKS 423
N++ +A ++ +P + + + W S+++ RF+ A + +R+ +
Sbjct: 253 INMHIKCGDIGDATKVFDNLP------TRDLVTWTSMITGLARHGRFKQACNLFQRMEEE 306
Query: 424 FVDMDPQDF 432
V D F
Sbjct: 307 GVQPDKVAF 315
>gi|225465641|ref|XP_002270476.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g08305-like [Vitis vinifera]
Length = 539
Score = 252 bits (643), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 152/478 (31%), Positives = 256/478 (53%), Gaps = 16/478 (3%)
Query: 1 MKQLLQIQAHLITSGLFFNNSFWTINLLKHSA--DFGSPDYTVLVFKCINNPGTFCVNAV 58
M + QIQA ITSGL ++ F + LL SA +G D++ +F I +P N++
Sbjct: 25 MSEFKQIQAFFITSGLSQHHPFAS-RLLSFSAISSWGDIDHSYRIFLQIPSPTISNWNSI 83
Query: 59 IKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGV 118
I+ +S P+ V +++M++ G P+ T+ + + A+ + H K G+
Sbjct: 84 IRGFSKGKNPNPSVSVFVKMLRFGVCPDHLTYPFIAKAVARLSELRLALAVHCRIAKEGL 143
Query: 119 DFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDI 178
F+ + NSLI+MYG G + AR +F +M R+ +SWN+++ G+ + GD+ +A ++F+
Sbjct: 144 WFDRFIANSLIHMYGSCGDIGSARKVFDEMLIRNSVSWNAMLDGYAKCGDLDSARQVFES 203
Query: 179 MPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEG 238
MP+R+VVSW+ MI G K G G +L +F M G + N+ TM SVL AC +G
Sbjct: 204 MPDRDVVSWSSMIDGCVKGGEYGVALAIFERMRVVGPKANEVTMVSVLCACAHLGALEQG 263
Query: 239 RSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDS--MADRNLVCWNAMILGHC 296
R++H Y V +++ ++L T+L+D+Y+KC +E A VF M +++ WN +I G
Sbjct: 264 RTMHQYMVDNTMRFTLVLRTSLMDMYAKCGAIEEAIAVFRGVPMDQTDVLMWNTIIGGLA 323
Query: 297 IHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYK 356
HG E ++LF + V G I PDEIT++ + AC L+ E +F+ +
Sbjct: 324 THGLVHESLELFKEM---QVLG--IVPDEITYLCLFSACAHGGLVHEAWHFFKSL-GKQG 377
Query: 357 IKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAM 416
+ P HY CM ++ + A EA + + +MP M + M +LL+ C +
Sbjct: 378 MVPKSEHYACMVDVLSRAGQLAEAYDFIAQMP-----MEPTASMLGALLNGCMNHRRFDL 432
Query: 417 VERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDL 474
ER+ + ++++P RY L NVYA W++ +RE M++R + + PG V++
Sbjct: 433 AERVGRKLIELEPDHDGRYIGLSNVYAGVKLWDNARMMREAMERRGVKKSPGFSFVEV 490
>gi|449458017|ref|XP_004146744.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g49142-like [Cucumis sativus]
Length = 678
Score = 252 bits (643), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 152/522 (29%), Positives = 256/522 (49%), Gaps = 49/522 (9%)
Query: 1 MKQLLQIQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIK 60
+K L ++ + ++ + + I L++ + G +F N +I+
Sbjct: 51 IKTLNKLHSKIVINEHLRIDPTLAIKLMRAYSAQGETSVARYIFDRSLEKNVVFFNVMIR 110
Query: 61 AYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDF 120
+Y N+ + + + + M+ F P+ YTF + +C+ + G H +K G+D
Sbjct: 111 SYVNNNLYVEALSIFQVMLSCAFNPDHYTFPCVLKACSGLDNLRVGLQVHDAIVKVGLDT 170
Query: 121 ELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAA-------- 172
L + N+L+ MYG G + AR + QM RD++SWNS+V+G+ +SG A
Sbjct: 171 NLFIGNALVAMYGKCGCLREARKVLDQMPYRDVVSWNSMVAGYAQSGQFDDALEICKEMD 230
Query: 173 -----------------------------HELFDIMPERNVVSWNIMISGYSKSGNPGCS 203
H +F+ M ++N++SWN+MI+ Y + P +
Sbjct: 231 SLNLNHDAGTMASLSPVVCYTSLENVQYIHNMFERMTKKNLISWNVMIAIYVNNSMPNEA 290
Query: 204 LKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDL 263
+ LF +M + G + + T+AS+L ACG + GR +H Y + +L+PN++L+ AL+D+
Sbjct: 291 VSLFLQMEECGMKPDAVTIASLLPACGDLSALFLGRRLHKYIEKGNLRPNLLLENALLDM 350
Query: 264 YSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISP 323
Y+KC +E A+ VFD M R++V W +M+ + G+ + + LF +++ +P
Sbjct: 351 YAKCGCLEEARDVFDKMRLRDVVSWTSMMSAYGRSGQGYDAVALFAKMLD-----SGQNP 405
Query: 324 DEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEI 383
D I F+ V+ AC LL +GR YFR M + Y I P H+ CM +L+ A EEA
Sbjct: 406 DSIAFVSVLSACSHTGLLDQGRHYFRMMTEQYGIVPRIEHFACMVDLFGRAGEVEEAYSF 465
Query: 384 LRKMP-EDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVY 442
+++MP E N+ +W +LLS CR + + A + P+ Y L N+Y
Sbjct: 466 IKQMPMEPNER------VWGALLSACRVHSKMDIGLVAADLLFQLAPKQSGYYVLLSNIY 519
Query: 443 AVAGQWEDVARVRELMKKRRMGRMPGCRLVDLKEVVEKLKVG 484
A AG W+DV VR MKK + ++PG V+L V G
Sbjct: 520 AKAGMWKDVMNVRYAMKKIGIKKVPGISNVELNGQVHTFLAG 561
>gi|359495698|ref|XP_003635064.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g59200, chloroplastic-like [Vitis vinifera]
Length = 650
Score = 252 bits (643), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 146/495 (29%), Positives = 251/495 (50%), Gaps = 13/495 (2%)
Query: 1 MKQLLQIQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIK 60
+ Q+L I A LI +G + F LL+ + + DY +F+ +NP + A+I
Sbjct: 62 INQVLPIHAQLIRNG-HSQDPFMVFELLRSCSKCHAIDYASRIFQYTHNPNVYLYTALID 120
Query: 61 AYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDF 120
+ +S + Y +M+ + +P++Y S+ +C + G H ALK G+
Sbjct: 121 GFVSSGNYFDAIQLYSRMLHDSILPDNYLMASILKACGSQLALREGREVHSRALKLGLSS 180
Query: 121 ELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMP 180
V ++ +YG G + AR +F +M P D+++ ++S + G + A +F +
Sbjct: 181 NRLVRLRIMELYGKCGELGDARRVFEEM-PEDVVASTVMISSYSDQGLVEEAGAVFSRVR 239
Query: 181 ERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRS 240
++ V W MI G+ ++ +L+ FR M R N+ T+ VL+AC + GR
Sbjct: 240 RKDTVCWTAMIDGFVRNEEMNRALEAFRGMQGENVRPNEFTIVCVLSACSQLGALEIGRW 299
Query: 241 VHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGK 300
VH Y + ++ N+ + ALI++YS+C ++ AQ VFD M DR+++ +N MI G ++GK
Sbjct: 300 VHSYMRKFEIELNLFVGNALINMYSRCGSIDEAQTVFDEMKDRDVITYNTMISGLSMNGK 359
Query: 301 PEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPN 360
+ I+LF ++ G + P +TF+GV+ AC L+ G K F M Y ++P
Sbjct: 360 SRQAIELFRVMI-----GRRLRPTNVTFVGVLNACSHGGLVDFGFKIFHSMTRDYGVEPQ 414
Query: 361 FAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERL 420
HY CM +L EEA +++R M M+ + IM +LLS C+ + + E++
Sbjct: 415 IEHYGCMVDLLGRVGRLEEAYDLIRTM-----KMTPDHIMLGTLLSACKMHKNLELGEQV 469
Query: 421 AKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLKEVVEK 480
AK D D Y L +VYA +G+W++ A+VR MK+ M + PGC +++ + +
Sbjct: 470 AKVLEDRGQADSGTYVLLSHVYASSGKWKEAAQVRAKMKEAGMQKEPGCSSIEVNNEIHE 529
Query: 481 LKVGHFWRGGMKEEV 495
+G R KE +
Sbjct: 530 FLLGDL-RHPRKERI 543
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/178 (22%), Positives = 75/178 (42%), Gaps = 11/178 (6%)
Query: 218 NDKTMAS-----VLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEV 272
N K++ S +++ RS N+ +H +R + + L+ SKC ++
Sbjct: 40 NPKSLKSLDQKQIISLLQRSKHINQVLPIHAQLIRNGHSQDPFMVFELLRSCSKCHAIDY 99
Query: 273 AQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVI 332
A R+F + N+ + A+I G G + I+L++ +++ SI PD ++
Sbjct: 100 ASRIFQYTHNPNVYLYTALIDGFVSSGNYFDAIQLYSRMLH-----DSILPDNYLMASIL 154
Query: 333 CACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPED 390
AC L EGR+ + + + N + LY +A + +MPED
Sbjct: 155 KACGSQLALREGREVHSRALKL-GLSSNRLVRLRIMELYGKCGELGDARRVFEEMPED 211
>gi|222622042|gb|EEE56174.1| hypothetical protein OsJ_05117 [Oryza sativa Japonica Group]
Length = 545
Score = 252 bits (643), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 139/483 (28%), Positives = 245/483 (50%), Gaps = 10/483 (2%)
Query: 1 MKQLLQIQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIK 60
+++L +I A +T GL N + + + A+FG P +F I +P +++
Sbjct: 33 IRELQRIHAQALTHGLHPNQQSISCKIFRSYAEFGRPADAGRLFDEIPHPDIISFTSLMS 92
Query: 61 AYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDF 120
+ + + + I +G P+ + V + G G + HGL + G+D
Sbjct: 93 LHLKLDHHWKAISVFSHAIASGHRPDGFAAVGALSASGGLGDQRIGSVVHGLIFRCGLDS 152
Query: 121 ELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMP 180
EL V N+L++MY G + AR +F +M +D ++W S++ G+++ + +A F MP
Sbjct: 153 ELVVCNALVDMYCRCGKFEPARTVFDRMLVKDEVTWGSMLYGYMKCVGVDSALSFFYQMP 212
Query: 181 ERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRS 240
++ VSW +I+G+ + P +L+LF +M+ G R N T+ VL+AC + GR+
Sbjct: 213 MKSTVSWTALITGHVQDKQPIQALELFGKMLLEGHRPNHITIVGVLSACADIGALDLGRA 272
Query: 241 VHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGK 300
+HGY +++ NII+ AL+D+Y+K + A VF+ + ++ W MI + G
Sbjct: 273 IHGYGSKSNATTNIIVTNALMDMYAKSGSIASAFSVFEEVQMKDAFTWTTMISSFTVQGN 332
Query: 301 PEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPN 360
+ ++LF ++ I P+ +TF+ V+ AC A L+ EGR+ F +M + Y I P
Sbjct: 333 GRKAVELFWDMLR-----SGILPNSVTFVSVLSACSHAGLIQEGRELFDKMREVYHIDPR 387
Query: 361 FAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERL 420
HY CM +L L EEAE ++ M + D ++W SLLS C G + E
Sbjct: 388 LEHYGCMVDLLGRGGLLEEAEALIDHMDVEPD-----IVIWRSLLSACLAHGNDRLAEIA 442
Query: 421 AKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLKEVVEK 480
+ +P D Y L N+YA++ +W++ +R+ M R++ + PGC +++ VV +
Sbjct: 443 GMEIIKREPGDDGVYVLLWNMYALSNRWKEALDMRKQMLSRKIYKKPGCSWIEVDGVVHE 502
Query: 481 LKV 483
V
Sbjct: 503 FLV 505
>gi|296082942|emb|CBI22243.3| unnamed protein product [Vitis vinifera]
Length = 526
Score = 251 bits (642), Expect = 5e-64, Method: Compositional matrix adjust.
Identities = 148/473 (31%), Positives = 233/473 (49%), Gaps = 46/473 (9%)
Query: 35 GSPDYTVLVFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLF 94
G+ Y +F I P TF N +I+ + S P + Y QM P+ +TF +
Sbjct: 26 GTMAYAHQLFPHITEPDTFMWNTMIRGSAQSPSPLNAISLYSQMENGCVRPDKFTFPFVL 85
Query: 95 GSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLI 154
+C + V+ G HG + G + V N+LI + G + AR +F + RD++
Sbjct: 86 KACTRLCWVKMGFGVHGRVFRLGFESNTFVRNTLIYFHANCGDLAVARALFDGSAKRDVV 145
Query: 155 SWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGC------------ 202
+W+++ +G+ R G++ A +LFD MP +++VSWN+MI+GY+K G
Sbjct: 146 AWSALTAGYARRGELGVARQLFDEMPVKDLVSWNVMITGYAKRGEMESARKLFDEVPKRD 205
Query: 203 -------------------SLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHG 243
+L++F EM G ++ TM S+L+AC + G+ +H
Sbjct: 206 VVTWNAMIAGYVLCGSNQQALEMFEEMRSVGELPDEVTMLSLLSACTDLGDLDAGQRIHC 265
Query: 244 YTVRTSLKP-NIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPE 302
+ +++L ALID+Y+KC + A VF M ++++ WN+++ G HG E
Sbjct: 266 CISEMGFRDLSVLLGNALIDMYAKCGSIVRALEVFQGMREKDVSTWNSVLGGLAFHGHAE 325
Query: 303 EGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFA 362
+ I LFT + I PDEITF+GV+ AC A + EGR+YF M D Y I+PN
Sbjct: 326 KSIHLFTEMRK-----LKIRPDEITFVGVLVACSHAGRVEEGRQYFDLMRDEYNIEPNIR 380
Query: 363 HYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFE--SIMWVSLLSLCRFQGAVAMVERL 420
HY CM +L A L EA + + D M E +I+W +LL CR G V + R
Sbjct: 381 HYGCMVDLLGRAGLLNEAFDFI-------DTMKIEPNAIVWRTLLGACRIHGNVELGRRA 433
Query: 421 AKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVD 473
+ M + Y L N+YA G+W+ V +VR+LM + + GC L++
Sbjct: 434 NMQLLKMRHDESGDYVLLSNIYASRGEWDGVEKVRKLMDDSGVRKEAGCSLIE 486
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 80/316 (25%), Positives = 137/316 (43%), Gaps = 29/316 (9%)
Query: 151 RDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREM 210
R+LI +SI SG M+ AH+LF + E + WN MI G ++S +P ++ L+ +M
Sbjct: 14 RELIYASSIAI----SGTMAYAHQLFPHITEPDTFMWNTMIRGSAQSPSPLNAISLYSQM 69
Query: 211 MKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKV 270
R + T VL AC R G VHG R + N + LI ++ C +
Sbjct: 70 ENGCVRPDKFTFPFVLKACTRLCWVKMGFGVHGRVFRLGFESNTFVRNTLIYFHANCGDL 129
Query: 271 EVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIG 330
VA+ +FD A R++V W+A+ G+ G+ +LF + D +++
Sbjct: 130 AVARALFDGSAKRDVVAWSALTAGYARRGELGVARQLFDEMP---------VKDLVSWNV 180
Query: 331 VICACVRAELLTEGRKYFRQMI--DFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMP 388
+I + + RK F ++ D A Y + E+ EE + ++P
Sbjct: 181 MITGYAKRGEMESARKLFDEVPKRDVVTWNAMIAGYVLCGSNQQALEMFEEMRSV-GELP 239
Query: 389 EDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRY--QFLLNVYAVAG 446
++ + +SLLS C G + +R+ +M +D S L+++YA G
Sbjct: 240 DE--------VTMLSLLSACTDLGDLDAGQRIHCCISEMGFRDLSVLLGNALIDMYAKCG 291
Query: 447 QWEDVARVRELMKKRR 462
+ R E+ + R
Sbjct: 292 S---IVRALEVFQGMR 304
>gi|449520333|ref|XP_004167188.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g49142-like [Cucumis sativus]
Length = 678
Score = 251 bits (642), Expect = 5e-64, Method: Compositional matrix adjust.
Identities = 151/521 (28%), Positives = 254/521 (48%), Gaps = 47/521 (9%)
Query: 1 MKQLLQIQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIK 60
+K L ++ + ++ + + I L++ + G +F N +I+
Sbjct: 51 IKTLNKLHSKIVINEHLRIDPTLAIKLMRAYSAQGETSVARYIFDRSLEKNVVFFNVMIR 110
Query: 61 AYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDF 120
+Y N+ + + + + M+ F P+ YTF + +C+ + G H +K G+D
Sbjct: 111 SYVNNNLYVEALSIFQVMLSCAFNPDHYTFPCVLKACSGLDNLRVGLQVHDAIVKVGLDT 170
Query: 121 ELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAA-------- 172
L + N+L+ MYG G + AR + QM RD++SWNS+V+G+ +SG A
Sbjct: 171 NLFIGNALVAMYGKCGCLREARKVLDQMPYRDVVSWNSMVAGYAQSGQFDDALEICKEMD 230
Query: 173 -----------------------------HELFDIMPERNVVSWNIMISGYSKSGNPGCS 203
H +F+ M ++N++SWN+MI+ Y + P +
Sbjct: 231 SLNLNHDAGTMASLSPVVCYTSLENVQYIHNMFERMTKKNLISWNVMIAIYVNNSMPNEA 290
Query: 204 LKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDL 263
+ LF +M + G + + T+AS+L ACG + GR +H Y + +L+PN++L+ AL+D+
Sbjct: 291 VSLFLQMEECGMKPDAVTIASLLPACGDLSALFLGRRLHKYIEKGNLQPNLLLENALLDM 350
Query: 264 YSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISP 323
Y+KC +E A+ VFD M R++V W +M+ + G+ + + LF +++ +P
Sbjct: 351 YAKCGCLEEARDVFDKMRLRDVVSWTSMMSAYGRSGQGYDAVALFAKMLD-----SGQNP 405
Query: 324 DEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEI 383
D I F+ V+ AC LL +GR YFR M + Y I P H+ CM +L+ A EEA
Sbjct: 406 DSIAFVSVLSACSHTGLLDQGRHYFRMMTEQYGIVPRIEHFACMVDLFGRAGEVEEAYSF 465
Query: 384 LRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYA 443
+++MP M +W +LLS CR + + A + P+ Y L N+YA
Sbjct: 466 IKQMP-----MEPNERVWGALLSACRVHSKMDIGLVAADLLFQLAPKQSGYYVLLSNIYA 520
Query: 444 VAGQWEDVARVRELMKKRRMGRMPGCRLVDLKEVVEKLKVG 484
AG W+DV VR MKK + ++PG V+L V G
Sbjct: 521 KAGMWKDVMNVRYAMKKIGIKKVPGISNVELNGQVHTFLAG 561
>gi|54695180|dbj|BAD67155.1| PpPPR_98 [Physcomitrella patens]
Length = 986
Score = 251 bits (642), Expect = 5e-64, Method: Compositional matrix adjust.
Identities = 145/474 (30%), Positives = 239/474 (50%), Gaps = 43/474 (9%)
Query: 1 MKQLLQIQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIK 60
+K+ QIQ H+I +G ++ T LL A GS VF+ I+ NA+I
Sbjct: 429 LKRGQQIQDHIIEAGYGSDDRVRTA-LLSMYAKCGSLKDAHRVFEKISKQNVVAWNAMIT 487
Query: 61 AYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDF 120
AY D + + ++K G PNS TF S+ C + +E G H L +K G++
Sbjct: 488 AYVQHEQYDNALATFQALLKEGIKPNSSTFTSILNVCKSSDSLELGKWVHFLIMKAGLES 547
Query: 121 ELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMP 180
+L V N+L++M+ V GD+ +A LF+ MP
Sbjct: 548 DLHVSNALVSMF-------------------------------VNCGDLMSAKNLFNDMP 576
Query: 181 ERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRS 240
+R++VSWN +I+G+ + G + F+ M +SG + + T +L AC EGR
Sbjct: 577 KRDLVSWNTIIAGFVQHGKNQVAFDYFKMMQESGIKPDKITFTGLLNACASPEALTEGRR 636
Query: 241 VHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGK 300
+H + ++++ T LI +Y+KC +E A +VF + +N+ W +MI G+ HG+
Sbjct: 637 LHALITEAAFDCDVLVGTGLISMYTKCGSIEDAHQVFHKLPKKNVYSWTSMIAGYAQHGR 696
Query: 301 PEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPN 360
+E ++LF + + PD ITF+G + AC A L+ EG +F+ M +F I+P
Sbjct: 697 GKEALELFYQMQQ-----EGVKPDWITFVGALSACAHAGLIEEGLHHFQSMKEF-NIEPR 750
Query: 361 FAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERL 420
HY CM +L+ A L EA E + KM + D S +W +LL C+ V + E+
Sbjct: 751 MEHYGCMVDLFGRAGLLNEAVEFIIKMQVEPD-----SRVWGALLGACQVHLNVELAEKA 805
Query: 421 AKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDL 474
A+ +++DP D + L N+YA AG W++VA++R++M R + + PG +++
Sbjct: 806 AQKKLELDPNDNGVFVILSNIYAAAGMWKEVAKMRKVMLDRGVVKKPGQSWIEV 859
Score = 151 bits (382), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 90/357 (25%), Positives = 162/357 (45%), Gaps = 37/357 (10%)
Query: 35 GSPDYTVLVFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLF 94
GS + + VF + A+I ++ D+ +F+ +MI++G PN TF+S+
Sbjct: 361 GSMEDALEVFDLVKGRNVVSWTAMIAGFAQHGRIDEAFLFFNKMIESGIEPNRVTFMSIL 420
Query: 95 GSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLI 154
G+C+ ++RG ++ G + V +L++MY
Sbjct: 421 GACSSPSALKRGQQIQDHIIEAGYGSDDRVRTALLSMYA--------------------- 459
Query: 155 SWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSG 214
+ G + AH +F+ + ++NVV+WN MI+ Y + +L F+ ++K G
Sbjct: 460 ----------KCGSLKDAHRVFEKISKQNVVAWNAMITAYVQHEQYDNALATFQALLKEG 509
Query: 215 FRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQ 274
+ N T S+L C S G+ VH ++ L+ ++ + AL+ ++ C + A+
Sbjct: 510 IKPNSSTFTSILNVCKSSDSLELGKWVHFLIMKAGLESDLHVSNALVSMFVNCGDLMSAK 569
Query: 275 RVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICA 334
+F+ M R+LV WN +I G HGK + F + I PD+ITF G++ A
Sbjct: 570 NLFNDMPKRDLVSWNTIIAGFVQHGKNQVAFDYFKMMQE-----SGIKPDKITFTGLLNA 624
Query: 335 CVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDN 391
C E LTEGR+ +I + + ++Y E+A ++ K+P+ N
Sbjct: 625 CASPEALTEGRR-LHALITEAAFDCDVLVGTGLISMYTKCGSIEDAHQVFHKLPKKN 680
Score = 146 bits (368), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 105/444 (23%), Positives = 194/444 (43%), Gaps = 59/444 (13%)
Query: 6 QIQAHLITSG----LFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKA 61
+I H+ SG +F N+ L+ A G+ +F + + N ++
Sbjct: 131 RIYNHIKKSGVQPDIFMRNT-----LINMYAKCGNTISAKQIFDDMREKDVYSWNLLLGG 185
Query: 62 YSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFE 121
Y + ++ + QM+++ P+ TFVS+ +CA V++G + L LK G D +
Sbjct: 186 YVQHGLYEEAFKLHEQMVQDSVKPDKRTFVSMLNACADARNVDKGRELYNLILKAGWDTD 245
Query: 122 LPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPE 181
L V +LINM H++ GD+ A ++FD +P
Sbjct: 246 LFVGTALINM-------------------------------HIKCGDIGDATKVFDNLPT 274
Query: 182 RNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSV 241
R++V+W MI+G ++ G + LF+ M + G + + S+L AC +G+ V
Sbjct: 275 RDLVTWTSMITGLARHGRFKQACNLFQRMEEEGVQPDKVAFVSLLRACNHPEALEQGKKV 334
Query: 242 HGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKP 301
H I + TA++ +Y+KC +E A VFD + RN+V W AMI G HG+
Sbjct: 335 HARMKEVGWDTEIYVGTAILSMYTKCGSMEDALEVFDLVKGRNVVSWTAMIAGFAQHGRI 394
Query: 302 EEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNF 361
+E F ++ I P+ +TF+ ++ AC L G++ +I+ +
Sbjct: 395 DEAFLFFNKMIE-----SGIEPNRVTFMSILGACSSPSALKRGQQIQDHIIEAGYGSDDR 449
Query: 362 AHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLC----RFQGAVAMV 417
+ ++YA ++A + K+ + N + W ++++ ++ A+A
Sbjct: 450 VRT-ALLSMYAKCGSLKDAHRVFEKISKQN------VVAWNAMITAYVQHEQYDNALATF 502
Query: 418 ERLAKSFVDMDPQDFSRYQFLLNV 441
+ L K + + F+ +LNV
Sbjct: 503 QALLKEGIKPNSSTFTS---ILNV 523
Score = 113 bits (282), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 79/328 (24%), Positives = 147/328 (44%), Gaps = 38/328 (11%)
Query: 24 TINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGF 83
T+ +L S P +VF I + T NAV+ S + ++ + ++ +
Sbjct: 49 TLRMLTTSFSGRCPKGRCVVFADIKD--TQKANAVLNRLSKAGQFNEAMQVLERVDSSHI 106
Query: 84 MPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARN 143
T+ +L C K + G + K+GV ++ + N+LINMY G A+
Sbjct: 107 QIYRQTYSALLQLCIKFKNLGDGERIYNHIKKSGVQPDIFMRNTLINMYAKCGNTISAKQ 166
Query: 144 MFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCS 203
+F M +D+ SWN ++ G+V+ G A
Sbjct: 167 IFDDMREKDVYSWNLLLGGYVQHGLYEEA------------------------------- 195
Query: 204 LKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDL 263
KL +M++ + + +T S+L AC + ++GR ++ ++ ++ + TALI++
Sbjct: 196 FKLHEQMVQDSVKPDKRTFVSMLNACADARNVDKGRELYNLILKAGWDTDLFVGTALINM 255
Query: 264 YSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISP 323
+ KC + A +VFD++ R+LV W +MI G HG+ ++ LF + + P
Sbjct: 256 HIKCGDIGDATKVFDNLPTRDLVTWTSMITGLARHGRFKQACNLFQRMEE-----EGVQP 310
Query: 324 DEITFIGVICACVRAELLTEGRKYFRQM 351
D++ F+ ++ AC E L +G+K +M
Sbjct: 311 DKVAFVSLLRACNHPEALEQGKKVHARM 338
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 53/249 (21%), Positives = 121/249 (48%), Gaps = 16/249 (6%)
Query: 188 NIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVR 247
N +++ SK+G ++++ + S + +T +++L C + +G ++ + +
Sbjct: 79 NAVLNRLSKAGQFNEAMQVLERVDSSHIQIYRQTYSALLQLCIKFKNLGDGERIYNHIKK 138
Query: 248 TSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKL 307
+ ++P+I + LI++Y+KC A+++FD M ++++ WN ++ G+ HG EE KL
Sbjct: 139 SGVQPDIFMRNTLINMYAKCGNTISAKQIFDDMREKDVYSWNLLLGGYVQHGLYEEAFKL 198
Query: 308 FTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCM 367
+V S+ PD+ TF+ ++ AC A + +GR+ + ++ F +
Sbjct: 199 HEQMVQ-----DSVKPDKRTFVSMLNACADARNVDKGRELYNLILKAGWDTDLFVGT-AL 252
Query: 368 ANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLC----RFQGAVAMVERLAKS 423
N++ +A ++ +P + + + W S+++ RF+ A + +R+ +
Sbjct: 253 INMHIKCGDIGDATKVFDNLP------TRDLVTWTSMITGLARHGRFKQACNLFQRMEEE 306
Query: 424 FVDMDPQDF 432
V D F
Sbjct: 307 GVQPDKVAF 315
>gi|297733959|emb|CBI15206.3| unnamed protein product [Vitis vinifera]
Length = 416
Score = 251 bits (642), Expect = 5e-64, Method: Compositional matrix adjust.
Identities = 139/424 (32%), Positives = 221/424 (52%), Gaps = 40/424 (9%)
Query: 38 DYTVLVFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSC 97
DY + VF I NP F N +I+ + P++ FY +M G + +++T+ L C
Sbjct: 2 DYALRVFGKIENPDGFLWNTMIRGLGRTRQPEKAFEFYKRMQVKGEVLDNFTYSFLVKVC 61
Query: 98 AKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWN 157
+ G G H LK+G++ + V N+L++MYG F
Sbjct: 62 GQLGSDLLGKQIHCNVLKHGLEEHVFVRNTLVHMYGMFK--------------------- 100
Query: 158 SIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRG 217
D+ AA LF+ MP+ +V+WN +I G +++LF M++SG +
Sbjct: 101 ----------DIEAATHLFEEMPKSYLVAWNTIIDCNVYCGRYKEAIELFFRMLQSGLKP 150
Query: 218 NDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVF 277
+D T L+AC + GR VH T L + + +LID+Y+KC VE A +F
Sbjct: 151 DDATFVVTLSACAALGELDIGRRVHSCIDHTGLGNVVSVSNSLIDMYAKCGVVEAAYEIF 210
Query: 278 DSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVR 337
+ M RN+V WN MILG +HG +E ++LF+ ++ +A +P+E+TF+GV+CAC
Sbjct: 211 NKMKGRNIVSWNTMILGLAMHGHGDEALELFSKMLEEKLA----TPNEVTFLGVLCACSH 266
Query: 338 AELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFE 397
++ EGR+YF M Y I+P HY M ++ A L EEA +++ MP +++
Sbjct: 267 GGMVEEGRRYFDIMRRDYNIQPTIKHYGSMVDILGRAGLVEEAYRLIKSMPIESN----- 321
Query: 398 SIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVREL 457
SI+W +LL+ CR G + + E++ + ++++P S Y L N+YA AGQW V RVR+
Sbjct: 322 SIVWRTLLAACRVHGNLELAEQVRQQLLELEPDHSSDYVLLANMYASAGQWNKVVRVRKS 381
Query: 458 MKKR 461
M R
Sbjct: 382 MHIR 385
>gi|147811587|emb|CAN70294.1| hypothetical protein VITISV_005974 [Vitis vinifera]
Length = 562
Score = 251 bits (642), Expect = 5e-64, Method: Compositional matrix adjust.
Identities = 151/485 (31%), Positives = 252/485 (51%), Gaps = 47/485 (9%)
Query: 1 MKQLLQIQAHLITSGLFFNNSFWTINLLKHSA--DFGSPDYTVLVFKCINNPGTFCVNAV 58
M++ Q A ++ GLF +SF NL+ A D+GS DY +F+ ++ PG+F N +
Sbjct: 1 MEEFKQSHARILKXGLF-XDSFCASNLVATCALSDWGSMDYACSIFRQMDEPGSFZFNTM 59
Query: 59 IKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGV 118
++ + ++ ++ Y +M + G P+++T+ +L +CA+ VE G H LK G+
Sbjct: 60 MRGHVKDMNTEEALITYKEMAERGVKPDNFTYPTLLKACARLPAVEEGMQVHAHILKLGL 119
Query: 119 DFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDI 178
+ ++ V NSLI+MYG + G++ +F+
Sbjct: 120 ENDVFVQNSLISMYG-------------------------------KCGEIGVCCAVFEQ 148
Query: 179 MPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGF-RGNDKTMASVLTACGRSARFNE 237
M ER+V SW+ +I+ ++ G L+L +M G+ R + + SVL+AC +
Sbjct: 149 MNERSVASWSALITAHASLGMWSDCLRLLGDMSNEGYWRAEESILVSVLSACTHLGALDL 208
Query: 238 GRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCI 297
GRSVHG+ +R N+I++T+LI++Y KC + +F MA +N + ++ MI G +
Sbjct: 209 GRSVHGFLLRNVSGLNVIVETSLIEMYLKCGXLYKGMCLFQKMAKKNKLSYSVMISGLAM 268
Query: 298 HGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKI 357
HG EG+++FT ++ + PD+I ++GV+ AC A L+ EG + F +M + I
Sbjct: 269 HGYGREGLRIFTEMLE-----QGLEPDDIVYVGVLNACSHAGLVQEGLQCFNRMKLEHGI 323
Query: 358 KPNFAHYWCMANLYAGAELTEEAEEILRKMP-EDNDNMSFESIMWVSLLSLCRFQGAVAM 416
+P HY CM +L A +EA E+++ MP E ND ++W SLLS + +
Sbjct: 324 EPTIQHYGCMVDLMGRAGKIDEALELIKSMPMEPND------VLWRSLLSASKVHNNLQA 377
Query: 417 VERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLKE 476
E AK +D Q S Y L N+YA A +WEDVAR R M + + + PG LV++K
Sbjct: 378 GEIAAKQLFKLDSQKASDYVVLSNMYAQAQRWEDVARTRTNMFSKGLSQRPGFSLVEVKR 437
Query: 477 VVEKL 481
+ +
Sbjct: 438 KMHRF 442
>gi|359490555|ref|XP_003634110.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g49142-like [Vitis vinifera]
Length = 678
Score = 251 bits (642), Expect = 5e-64, Method: Compositional matrix adjust.
Identities = 155/521 (29%), Positives = 255/521 (48%), Gaps = 47/521 (9%)
Query: 1 MKQLLQIQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIK 60
+K L ++ + + +N I L++ A G P T +F I N +I+
Sbjct: 51 IKYLKKLHSKICIDHDLHSNPSLGIKLMRAYAVCGEPWSTRHIFDEIPKKNVVFFNVMIR 110
Query: 61 AYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDF 120
+Y N+ + ++ + M +G P+ YT+ + + + + + G H ++ G+D
Sbjct: 111 SYVNNHLYSDALLVFKNMAGHGIDPDHYTYPCVLKASSGSEDLWVGMQIHAAVVRVGLDL 170
Query: 121 ELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSG------------- 167
+ V N LI+MYG G + A + QM RD++SWNS+V+G R+G
Sbjct: 171 NVFVGNGLISMYGKCGCLVEACRVLDQMPCRDVVSWNSLVAGCARNGQFDDALEVCKEME 230
Query: 168 ------------------------DMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCS 203
++S E+F + +++VSWN+MI+ Y + P +
Sbjct: 231 LLGLKPDAGTMASLLPAVTNTCLDNVSFVKEMFMKLANKSLVSWNVMIAVYMNNSMPAEA 290
Query: 204 LKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDL 263
+ +F +M + ++ASVL ACG + GR +H Y VR L+PN++L+ ALID+
Sbjct: 291 VDIFLQMEDHAVDPDAISIASVLPACGDLSALLLGRRIHEYVVRKRLQPNLLLENALIDM 350
Query: 264 YSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISP 323
Y+KC +E A+ VFD M R++V W +MI + ++GK + + LF+ + + ++P
Sbjct: 351 YAKCGCLEYAREVFDQMKFRDVVSWTSMISAYGMNGKGRDAVSLFSRMQD-----LGLNP 405
Query: 324 DEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEI 383
D I F+ V+ AC A LL EGR YF+ M + KI P H+ CM +L A +EA
Sbjct: 406 DSIAFVSVLSACSHAGLLDEGRYYFKLMTEECKIVPRIEHFVCMVDLLGRAGQVDEAYGF 465
Query: 384 LRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYA 443
+++MP M +W +LLS CR + + A + P+ Y L N+YA
Sbjct: 466 IKQMP-----MEPNERVWGALLSACRVYSNMIIGLLAADQLFQLCPEQSGYYVLLSNIYA 520
Query: 444 VAGQWEDVARVRELMKKRRMGRMPGCRLVDLKEVVEKLKVG 484
AG+WEDV VR +MK + + +MPG +L V G
Sbjct: 521 KAGRWEDVTTVRSIMKTKGIKKMPGVSNFELDNRVHTFLAG 561
>gi|347954516|gb|AEP33758.1| organelle transcript processing 82, partial [Barbarea verna]
Length = 710
Score = 251 bits (642), Expect = 5e-64, Method: Compositional matrix adjust.
Identities = 137/432 (31%), Positives = 225/432 (52%), Gaps = 45/432 (10%)
Query: 56 NAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALK 115
NA+I Y+++ + + + +M+K P+ T V++ +CA++G ++ G H
Sbjct: 204 NAIISGYADTGNNKEALDLFKEMMKTNVKPDESTMVTVVSACAQSGSIQLGRQVHSWIDD 263
Query: 116 NGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHEL 175
+G+ L ++N+LI++Y + G++ A L
Sbjct: 264 HGLGSNLKIVNALIDLYS-------------------------------KCGEVETACGL 292
Query: 176 FDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARF 235
F + ++V+SWN MI GY+ +L LF+EM++SG ND TM S+L AC +
Sbjct: 293 FQGLSNKDVISWNTMIGGYTHLNLYKEALLLFQEMLRSGENPNDVTMLSILPACAQLGAI 352
Query: 236 NEGRSVHGYTVR--TSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMIL 293
+ GR +H Y + + L T+LID+Y+KC +E A +VF+SM R L NAMI
Sbjct: 353 DFGRWIHVYIDKRIKGVTNASSLRTSLIDMYAKCGDIEAAHQVFNSMHHRTLSACNAMIF 412
Query: 294 GHCIHGKPEEGIKLFTAL-VNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMI 352
G +HG+ +F+ + NG I PD+ITF+G++ AC + +L GR+ FR M
Sbjct: 413 GFAMHGRANAAFDIFSRMRKNG------IEPDDITFVGLLSACSHSGMLDLGRRIFRSMT 466
Query: 353 DFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQG 412
YKI P HY CM +L L +EAEE++ M M + ++W SLL C+ G
Sbjct: 467 QNYKITPKLEHYGCMIDLLGHLGLFKEAEEMINTM-----TMEPDGVIWCSLLKACKMHG 521
Query: 413 AVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLV 472
V + E A+ + ++P++ Y L N+YA AG+W +VA +R L+ + M ++PGC +
Sbjct: 522 NVELGESFAQKLIKIEPENPGSYVLLSNIYATAGRWNEVANIRALLNDKGMKKVPGCSSI 581
Query: 473 DLKEVVEKLKVG 484
++ VV + +G
Sbjct: 582 EIDSVVHEFIIG 593
Score = 209 bits (532), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 117/348 (33%), Positives = 193/348 (55%), Gaps = 9/348 (2%)
Query: 1 MKQLLQIQAHLITSGLFFNNSFWTINLLKH---SADFGSPDYTVLVFKCINNPGTFCVNA 57
++ L I A +I +GL N ++ LL+ S +F Y + VF+ I P N
Sbjct: 15 LQSLRIIHAQMIKTGLH-NTNYALSRLLEFCILSPNFDGLPYAISVFETIQEPNLLIWNT 73
Query: 58 VIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNG 117
+ + ++ S P + Y+ MI G +PNSYTF L SCAK + G HG LK G
Sbjct: 74 MFRGHALSSDPVSAIKLYVCMISLGLLPNSYTFPFLLKSCAKLKVSKEGQQIHGHVLKLG 133
Query: 118 VDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFD 177
+ +L V SLI+MY G A +F S RD++S+ ++++G+ G + +A ++FD
Sbjct: 134 YELDLYVHTSLISMYVKNGRWKDAHKVFDGSSHRDVVSYTALITGYASRGYIESAQKMFD 193
Query: 178 IMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNE 237
+P ++VVSWN +ISGY+ +GN +L LF+EMMK+ + ++ TM +V++AC +S
Sbjct: 194 EIPVKDVVSWNAIISGYADTGNNKEALDLFKEMMKTNVKPDESTMVTVVSACAQSGSIQL 253
Query: 238 GRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCI 297
GR VH + L N+ + ALIDLYSKC +VE A +F +++++++ WN MI G+
Sbjct: 254 GRQVHSWIDDHGLGSNLKIVNALIDLYSKCGEVETACGLFQGLSNKDVISWNTMIGGYTH 313
Query: 298 HGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGR 345
+E + LF ++ +P+++T + ++ AC + + GR
Sbjct: 314 LNLYKEALLLFQEMLR-----SGENPNDVTMLSILPACAQLGAIDFGR 356
Score = 91.7 bits (226), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 59/235 (25%), Positives = 111/235 (47%), Gaps = 27/235 (11%)
Query: 172 AHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGR 231
A +F+ + E N++ WN M G++ S +P ++KL+ M+ G N T +L +C +
Sbjct: 56 AISVFETIQEPNLLIWNTMFRGHALSSDPVSAIKLYVCMISLGLLPNSYTFPFLLKSCAK 115
Query: 232 SARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAM 291
EG+ +HG+ ++ + ++ + T+LI +Y K + + A +VFD + R++V + A+
Sbjct: 116 LKVSKEGQQIHGHVLKLGYELDLYVHTSLISMYVKNGRWKDAHKVFDGSSHRDVVSYTAL 175
Query: 292 ILGHCIHGKPEEGIKLF-----------TALVNGTVAGGS---------------ISPDE 325
I G+ G E K+F A+++G G+ + PDE
Sbjct: 176 ITGYASRGYIESAQKMFDEIPVKDVVSWNAIISGYADTGNNKEALDLFKEMMKTNVKPDE 235
Query: 326 ITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEA 380
T + V+ AC ++ + GR+ ID + + N + +LY+ E A
Sbjct: 236 STMVTVVSACAQSGSIQLGRQ-VHSWIDDHGLGSNLKIVNALIDLYSKCGEVETA 289
Score = 76.3 bits (186), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 64/274 (23%), Positives = 117/274 (42%), Gaps = 35/274 (12%)
Query: 43 VFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGC 102
+F+ ++N N +I Y++ + + ++ + +M+++G PN T +S+ +CA+ G
Sbjct: 292 LFQGLSNKDVISWNTMIGGYTHLNLYKEALLLFQEMLRSGENPNDVTMLSILPACAQLGA 351
Query: 103 VERGGMCHGLALK--NGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIV 160
++ G H K GV + SLI+MY G ++ A +F M R L + N+++
Sbjct: 352 IDFGRWIHVYIDKRIKGVTNASSLRTSLIDMYAKCGDIEAAHQVFNSMHHRTLSACNAMI 411
Query: 161 SGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDK 220
G G +AA FDI F M K+G +D
Sbjct: 412 FGFAMHGRANAA---FDI----------------------------FSRMRKNGIEPDDI 440
Query: 221 TMASVLTACGRSARFNEGRSV-HGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDS 279
T +L+AC S + GR + T + P + +IDL + A+ + ++
Sbjct: 441 TFVGLLSACSHSGMLDLGRRIFRSMTQNYKITPKLEHYGCMIDLLGHLGLFKEAEEMINT 500
Query: 280 MA-DRNLVCWNAMILGHCIHGKPEEGIKLFTALV 312
M + + V W +++ +HG E G L+
Sbjct: 501 MTMEPDGVIWCSLLKACKMHGNVELGESFAQKLI 534
Score = 43.1 bits (100), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 46/187 (24%), Positives = 83/187 (44%), Gaps = 9/187 (4%)
Query: 19 NNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQM 78
N S +L+ A G + VF +++ NA+I ++ + + +M
Sbjct: 371 NASSLRTSLIDMYAKCGDIEAAHQVFNSMHHRTLSACNAMIFGFAMHGRANAAFDIFSRM 430
Query: 79 IKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKN-GVDFELPVMNSLINMYGCFGA 137
KNG P+ TFV L +C+ +G ++ G +N + +L +I++ G G
Sbjct: 431 RKNGIEPDDITFVGLLSACSHSGMLDLGRRIFRSMTQNYKITPKLEHYGCMIDLLGHLGL 490
Query: 138 MDCARNMFVQMSPR-DLISWNSIVS-----GHVRSGDMSAAHELFDIMPERNVVSWNIMI 191
A M M+ D + W S++ G+V G+ S A +L I PE N S+ ++
Sbjct: 491 FKEAEEMINTMTMEPDGVIWCSLLKACKMHGNVELGE-SFAQKLIKIEPE-NPGSYVLLS 548
Query: 192 SGYSKSG 198
+ Y+ +G
Sbjct: 549 NIYATAG 555
>gi|147810325|emb|CAN65024.1| hypothetical protein VITISV_026273 [Vitis vinifera]
Length = 805
Score = 251 bits (642), Expect = 5e-64, Method: Compositional matrix adjust.
Identities = 146/436 (33%), Positives = 229/436 (52%), Gaps = 13/436 (2%)
Query: 53 FCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVER--GGMCH 110
F N++I+ Y S P + ++ YL M+ G + N+YTF L +C G + G + H
Sbjct: 350 FMYNSMIRGYVLSHSPTRAILCYLDMLNYGLLANNYTFPPLIKACTTLGSSSKLIGCLVH 409
Query: 111 GLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMS 170
+ G D + V+++LI Y M AR +F ++ RD++ W +++ G+ + GD+
Sbjct: 410 AHVVTFGFDEDPFVVSALIEFYSLNFDMGTARTLFDRIPNRDVVLWTAMIDGYGKMGDVE 469
Query: 171 AAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACG 230
A LF+ MPERN +SW+ +++ YS+ G+ L LFR M ++G N+ + SVLTAC
Sbjct: 470 HARILFEDMPERNAISWSAVMAAYSRVGDFKEVLCLFRRMQEAGTMPNESVLVSVLTACA 529
Query: 231 RSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNA 290
+G VH Y + + N IL TAL+D+YSKC VE A F + +++ WNA
Sbjct: 530 HLGALAQGLWVHSYAKQCNFDSNPILATALVDMYSKCGCVESALSTFQGIPNKDAGAWNA 589
Query: 291 MILGHCIHGKPEEGIKLFTALV-NGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFR 349
MI G ++G + ++LF ++ NGT P E TF+ V+ AC A L+ EG K F
Sbjct: 590 MISGVAMNGDAWKSLELFNKMISNGT------QPTETTFVAVLTACTHARLVREGLKLFE 643
Query: 350 QMIDFYKIKPNFAHYWCMANLYAGAELTEEAEE-ILRKMPEDNDNMSFESIMWVSLLSLC 408
QM Y ++P HY C+ +L A A + EAE+ I KM ++ +W + L C
Sbjct: 644 QMSSNYGVEPQXEHYACLVDLMARAGMLAEAEKFIEEKMGGLGRG---DANVWGAXLGAC 700
Query: 409 RFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPG 468
R G + + R+ K DM D + N+Y AG + RVR L+ + M + PG
Sbjct: 701 RTYGNIEVGNRVWKKLADMGVADCGTHVLSYNLYREAGWDMEAKRVRRLISEXGMKKKPG 760
Query: 469 CRLVDLKEVVEKLKVG 484
C ++++ VE+ G
Sbjct: 761 CSIIEVDGTVEEFLAG 776
Score = 72.0 bits (175), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 69/304 (22%), Positives = 129/304 (42%), Gaps = 43/304 (14%)
Query: 22 FWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKN 81
WT ++ G ++ ++F+ + +AV+ AYS + + + +M +
Sbjct: 454 LWTA-MIDGYGKMGDVEHARILFEDMPERNAISWSAVMAAYSRVGDFKEVLCLFRRMQEA 512
Query: 82 GFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCA 141
G MPN VS+ +CA G + +G H A + D + +L++MY G ++ A
Sbjct: 513 GTMPNESVLVSVLTACAHLGALAQGLWVHSYAKQCNFDSNPILATALVDMYSKCGCVESA 572
Query: 142 RNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPG 201
+ F + +D +WN+++SG +GD +W
Sbjct: 573 LSTFQGIPNKDAGAWNAMISGVAMNGD-----------------AWK------------- 602
Query: 202 CSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEG-RSVHGYTVRTSLKPNIILDTAL 260
SL+LF +M+ +G + + T +VLTAC + EG + + ++P L
Sbjct: 603 -SLELFNKMISNGTQPTETTFVAVLTACTHARLVREGLKLFEQMSSNYGVEPQXEHYACL 661
Query: 261 IDLYSKCQKVEVAQRVFDSM------ADRNLVCWNAMILGHC-IHGKPEEGIKLFTALVN 313
+DL ++ + A++ + D N+ W A LG C +G E G +++ L +
Sbjct: 662 VDLMARAGMLAEAEKFIEEKMGGLGRGDANV--WGAX-LGACRTYGNIEVGNRVWKKLAD 718
Query: 314 GTVA 317
VA
Sbjct: 719 MGVA 722
Score = 62.8 bits (151), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 40/130 (30%), Positives = 66/130 (50%), Gaps = 4/130 (3%)
Query: 182 RNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTAC---GRSARFNEG 238
RN+ +N MI GY S +P ++ + +M+ G N+ T ++ AC G S++ G
Sbjct: 347 RNIFMYNSMIRGYVLSHSPTRAILCYLDMLNYGLLANNYTFPPLIKACTTLGSSSKL-IG 405
Query: 239 RSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIH 298
VH + V + + +ALI+ YS + A+ +FD + +R++V W AMI G+
Sbjct: 406 CLVHAHVVTFGFDEDPFVVSALIEFYSLNFDMGTARTLFDRIPNRDVVLWTAMIDGYGKM 465
Query: 299 GKPEEGIKLF 308
G E LF
Sbjct: 466 GDVEHARILF 475
>gi|242033621|ref|XP_002464205.1| hypothetical protein SORBIDRAFT_01g014070 [Sorghum bicolor]
gi|241918059|gb|EER91203.1| hypothetical protein SORBIDRAFT_01g014070 [Sorghum bicolor]
Length = 521
Score = 251 bits (642), Expect = 6e-64, Method: Compositional matrix adjust.
Identities = 151/484 (31%), Positives = 236/484 (48%), Gaps = 13/484 (2%)
Query: 1 MKQLLQIQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIK 60
M L Q+ A L+ SGL + + + + Y + + P +F N VI+
Sbjct: 46 MAHLRQLHAALVKSGLAKDPIAASRAVAFCAGPGRDVSYAERLVRHHPRPNSFMWNTVIR 105
Query: 61 AYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDF 120
A S+ P+ V ++ M+ + P T SL + A+ G G HG+ALK G+
Sbjct: 106 ALSDGARPEAAVALFVDMLGSPTPPERRTLPSLLAAYARLGRAGDGAALHGMALKLGLAG 165
Query: 121 ELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMP 180
+ V N+ I MY D A +F Q D ++ NS + R+G + A +FD MP
Sbjct: 166 DAYVRNATIAMYASCARADEALALFGQCPEFDAVACNSAIVALARAGRVDEARAVFDGMP 225
Query: 181 ERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRS 240
ER V +W+ M+S Y+++ G +L LF M G N + SVL C ++G
Sbjct: 226 ERTVATWSAMVSAYARAARCGEALALFSAMQADGVEPNANVLVSVLGCCASLGALDQGAW 285
Query: 241 VHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFD---SMADRNLVCWNAMILGHCI 297
VH Y R + N ++ TAL+D+Y KC V+ A++VFD S L WN+M+ G +
Sbjct: 286 VHAYIDRHGVAMNALVVTALVDMYCKCGSVDDARQVFDAARSQGSAKLSSWNSMMQGLAV 345
Query: 298 HGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKI 357
HG+ E + LF+ L + +SPD +TFI V+ A A + E + F M + +
Sbjct: 346 HGQWREAVALFSELRS-----YGLSPDNVTFIAVLTAYGHAGMPDEAQAAFASMATEHSV 400
Query: 358 KPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMV 417
+P HY C+ + A A EAE+ +R MP M+ ++ +W +LLS CR G +
Sbjct: 401 EPGIEHYGCLVDALARAGRLREAEDAIRSMP-----MAPDAAVWGALLSGCRLHGDAELG 455
Query: 418 ERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLKEV 477
R A+ V DP+D Y +V A G A VR M++ +G++PGC ++++ V
Sbjct: 456 ARAAREAVRCDPRDSGAYVLAASVLARGGNPGRGAGVRGRMREAGVGKVPGCSMIEVNGV 515
Query: 478 VEKL 481
V +
Sbjct: 516 VHEF 519
>gi|449453744|ref|XP_004144616.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Cucumis sativus]
gi|449511814|ref|XP_004164061.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Cucumis sativus]
Length = 681
Score = 251 bits (641), Expect = 6e-64, Method: Compositional matrix adjust.
Identities = 160/532 (30%), Positives = 257/532 (48%), Gaps = 73/532 (13%)
Query: 39 YTVLVFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCA 98
Y +F I P N +IK Y + + + + +++ + F+P+S+T + CA
Sbjct: 67 YAHSLFDWIQEPTLVSWNLLIKCYIENQRSNDAIALFCKLLCD-FVPDSFTLPCVLKGCA 125
Query: 99 KTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNS 158
+ G ++ G HGL LK G + V++SL++MY G ++ R +F +M +D++SWNS
Sbjct: 126 RLGALQEGKQIHGLVLKIGFGVDKFVLSSLVSMYSKCGEIELCRKVFDRMEDKDVVSWNS 185
Query: 159 IVSGHVR-------------------------------SGDMSAAHELFDIMPERNVVSW 187
++ G+ R SG + AA ++FD MP RN VSW
Sbjct: 186 LIDGYARCGEIELALEMFEEMPEKDSFSWTILIDGLSKSGKLEAARDVFDRMPIRNSVSW 245
Query: 188 NIMISGYSKSGNPGCS-------------------------------LKLFREMMKSGFR 216
N MI+GY K+G+ + LKLF M++
Sbjct: 246 NAMINGYMKAGDSNTAKELFDQMPERSLVTWNSMITGYERNKQFTKALKLFEVMLREDIS 305
Query: 217 GNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRV 276
N T+ ++A GR VH Y V++ K + +L T LI++YSKC V+ A RV
Sbjct: 306 PNYTTILGAVSAASGMVSLGTGRWVHSYIVKSGFKTDGVLGTLLIEMYSKCGSVKSALRV 365
Query: 277 FDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACV 336
F S+ + L W ++I+G +HG E+ ++LF + + P ITFIGV+ AC
Sbjct: 366 FRSIPKKKLGHWTSVIVGLGMHGLVEQTLELFDEMCR-----TGLKPHAITFIGVLNACS 420
Query: 337 RAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSF 396
A + +YF+ M Y IKP+ HY C+ ++ A EEA++ + +MP +
Sbjct: 421 HAGFAEDAHRYFKMMTYDYGIKPSIEHYGCLIDVLCRAGHLEEAKDTIERMP-----IKA 475
Query: 397 ESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRE 456
++W SLLS R G + M E A+ +D+ P Y L N+YA AG WE V +VRE
Sbjct: 476 NKVIWTSLLSGSRKHGNIRMGEYAAQHLIDLAPDTTGCYVILSNMYAAAGLWEKVRQVRE 535
Query: 457 LMKKRRMGRMPGCRLVDLKEVVEKLKVGHFWRGGMKEEVNKMMECRQSRSLA 508
+MKK+ M + PGC ++ + + + VG +E K+ E ++ ++A
Sbjct: 536 MMKKKGMKKDPGCSSIEHQGSIHEFIVGDKSHPQTEEIYIKLCEMKKKLNVA 587
Score = 98.2 bits (243), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 61/225 (27%), Positives = 114/225 (50%), Gaps = 15/225 (6%)
Query: 165 RSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMAS 224
R ++ AH LFD + E +VSWN++I Y ++ ++ LF +++ F + T+
Sbjct: 61 RINNLQYAHSLFDWIQEPTLVSWNLLIKCYIENQRSNDAIALFCKLL-CDFVPDSFTLPC 119
Query: 225 VLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRN 284
VL C R EG+ +HG ++ + + ++L+ +YSKC ++E+ ++VFD M D++
Sbjct: 120 VLKGCARLGALQEGKQIHGLVLKIGFGVDKFVLSSLVSMYSKCGEIELCRKVFDRMEDKD 179
Query: 285 LVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEG 344
+V WN++I G+ G+ E +++F + D ++ +I ++ L
Sbjct: 180 VVSWNSLIDGYARCGEIELALEMFEEMPE---------KDSFSWTILIDGLSKSGKLEAA 230
Query: 345 RKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPE 389
R F +M I+ N + M N Y A + A+E+ +MPE
Sbjct: 231 RDVFDRM----PIR-NSVSWNAMINGYMKAGDSNTAKELFDQMPE 270
>gi|357441857|ref|XP_003591206.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355480254|gb|AES61457.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 490
Score = 251 bits (641), Expect = 6e-64, Method: Compositional matrix adjust.
Identities = 144/468 (30%), Positives = 238/468 (50%), Gaps = 13/468 (2%)
Query: 3 QLLQIQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAY 62
L QI AH + GL +N + + + Y +F ++P N++IKA+
Sbjct: 24 HLPQIHAHFLRHGLHHSNQILS-HFVSVCTSLHQIPYATTIFNHTHHPNILLFNSIIKAH 82
Query: 63 SNSCVPDQGVVFY-LQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFE 121
S+ Q F+ L + + +P+++TF L + + + G H G
Sbjct: 83 SSFPPFHQSFHFFNLMKMTHNILPDNFTFPPLLKATSYLRDYDLGQCLHAHVTALGFYRH 142
Query: 122 LPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPE 181
PV L+ +Y G M+ A +F +M R+++ WN +++G + GD+ +LF M +
Sbjct: 143 SPVEIGLLEVYSNCGKMEDANKVFDEMLHREVVVWNIMINGFCKMGDLEIGLKLFKRMGQ 202
Query: 182 RNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSV 241
R+VVSWN+MIS ++ G + +FREM++ GF +D T+ +VL C R + G +
Sbjct: 203 RSVVSWNLMISCLAQRKKDGEAFGIFREMLEQGFEPDDATLVTVLPVCARLGDVDAGEWI 262
Query: 242 HGYTVRTSLKPNII-LDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGK 300
H Y L +I + +L+D Y KC +E A +VF+ M +N+V WNAMI G ++GK
Sbjct: 263 HSYADGKGLLRKVISVGNSLVDFYCKCGNLEAAWKVFNEMTKKNVVSWNAMISGLGLNGK 322
Query: 301 PEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPN 360
E G++LF + A ++P + TF+GV+ C A + +GR+ F M +K+ P
Sbjct: 323 GELGVELFEKM-----ARKGVTPSDSTFVGVLACCAHAGFVDKGREIFDSMTVKFKLSPK 377
Query: 361 FAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERL 420
HY C+ +L +EA +++R MP + + +W +LLS CR G + E
Sbjct: 378 LEHYGCVVDLLGRCGHVKEAYDLIRNMP-----LMPNAALWGALLSACRTHGDREVAEIA 432
Query: 421 AKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPG 468
AK V ++P + Y L NVYA +W +V +VR LM+ + + PG
Sbjct: 433 AKELVRLEPGNSGNYVLLSNVYAEERKWNEVEKVRVLMQGVGIKKNPG 480
>gi|413918370|gb|AFW58302.1| hypothetical protein ZEAMMB73_070872 [Zea mays]
Length = 688
Score = 251 bits (641), Expect = 6e-64, Method: Compositional matrix adjust.
Identities = 133/439 (30%), Positives = 237/439 (53%), Gaps = 17/439 (3%)
Query: 43 VFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGC 102
VF + N++I Y + + +V +++M+ GF P+ T S+ +CA
Sbjct: 208 VFDAMPERNVVSWNSLITCYEQNGPVGEALVLFVEMMATGFFPDEVTLSSVMSACAGLAA 267
Query: 103 VERGGMCHGLALK-NGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVS 161
G H +K + + ++ + N+L++MY G AR +F M R ++S SI++
Sbjct: 268 EREGRQVHAHMVKRDRLRDDMVLNNALVDMYAKCGRTWEARCIFDSMPSRSVVSETSILA 327
Query: 162 GHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKT 221
G+ +S ++ A +F M E+NV++WN++I+ Y+++G +++LF ++ + T
Sbjct: 328 GYAKSANVEDAQVVFSQMVEKNVIAWNVLIAAYAQNGEEEEAIRLFVQLKRDSIWPTHYT 387
Query: 222 MASVLTACGRSARFNEGRSVHGYTVRTSLK------PNIILDTALIDLYSKCQKVEVAQR 275
+VL ACG A G+ H + ++ + ++ + +L+D+Y K ++ +
Sbjct: 388 YGNVLNACGNIAVLQLGQQAHVHVLKEGFRFDFGPESDVFVGNSLVDMYLKTGSIDDGAK 447
Query: 276 VFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICAC 335
VF+ MA R+ V WNAMI+G+ +G+ ++ + LF ++ + +PD +T IGV+ AC
Sbjct: 448 VFERMAARDNVSWNAMIVGYAQNGRAKDALHLFERML-----CSNENPDSVTMIGVLSAC 502
Query: 336 VRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMS 395
+ L+ EGR++F M + + I P+ HY CM +L A +EAEE+++ MP + D
Sbjct: 503 GHSGLVDEGRRHFHFMTEDHGITPSRDHYTCMVDLLGRAGHLKEAEELIKDMPTEPD--- 559
Query: 396 FESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVR 455
S++W SLL CR V + ER A ++DP++ Y L N+YA G+W DV RVR
Sbjct: 560 --SVLWASLLGACRLHKNVELGERTAGRLFELDPENSGPYVLLSNMYAEMGKWADVFRVR 617
Query: 456 ELMKKRRMGRMPGCRLVDL 474
MK R + + PGC +++
Sbjct: 618 RSMKDRGVSKQPGCSWIEI 636
Score = 149 bits (377), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 99/353 (28%), Positives = 170/353 (48%), Gaps = 16/353 (4%)
Query: 110 HGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDM 169
HG LK+ V E ++N+L++ Y G + AR +F + R+ S+N+++S + R G
Sbjct: 40 HGCVLKSPVAGETFLLNTLVSTYARLGRLREARRVFDGIPLRNTFSYNALLSAYARLGRP 99
Query: 170 SAAHELFDIMPERNVVSWNIMISGYSKSG--NPGCSLKLFREMMKSGFRGNDKTMASVLT 227
A LF+ +P+ + S+N +++ ++ G + G +L+ M F N + AS L+
Sbjct: 100 DEARALFEAIPDPDQCSYNAVVAALARHGRGHAGDALRFLAAMHADDFVLNAYSFASALS 159
Query: 228 ACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVC 287
AC G VHG R+ ++ + TAL+D+Y+KC++ A+RVFD+M +RN+V
Sbjct: 160 ACAAEKDLRTGEQVHGLVARSPHADDVHIGTALVDMYAKCERPVDARRVFDAMPERNVVS 219
Query: 288 WNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKY 347
WN++I + +G E + LF ++ PDE+T V+ AC EGR+
Sbjct: 220 WNSLITCYEQNGPVGEALVLFVEMM-----ATGFFPDEVTLSSVMSACAGLAAEREGRQV 274
Query: 348 FRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSL 407
M+ +++ + + ++YA T EA I MP S VS S+
Sbjct: 275 HAHMVKRDRLRDDMVLNNALVDMYAKCGRTWEARCIFDSMP---------SRSVVSETSI 325
Query: 408 CRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKK 460
A VE F M ++ + L+ YA G+ E+ R+ +K+
Sbjct: 326 LAGYAKSANVEDAQVVFSQMVEKNVIAWNVLIAAYAQNGEEEEAIRLFVQLKR 378
Score = 144 bits (364), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 119/454 (26%), Positives = 201/454 (44%), Gaps = 81/454 (17%)
Query: 8 QAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSNSCV 67
+A + G+ N+F LL A G PD +F+ I +P NAV+ A +
Sbjct: 70 EARRVFDGIPLRNTFSYNALLSAYARLGRPDEARALFEAIPDPDQCSYNAVVAALARHGR 129
Query: 68 PDQG--VVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVM 125
G + F M + F+ N+Y+F S +CA + G HGL ++ ++ +
Sbjct: 130 GHAGDALRFLAAMHADDFVLNAYSFASALSACAAEKDLRTGEQVHGLVARSPHADDVHIG 189
Query: 126 NSLINMYG-CFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNV 184
+L++MY C +D AR +F M R+++SWNS
Sbjct: 190 TALVDMYAKCERPVD-ARRVFDAMPERNVVSWNS-------------------------- 222
Query: 185 VSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGY 244
+I+ Y ++G G +L LF EMM +GF ++ T++SV++AC A EGR VH +
Sbjct: 223 -----LITCYEQNGPVGEALVLFVEMMATGFFPDEVTLSSVMSACAGLAAEREGRQVHAH 277
Query: 245 TV-RTSLKPNIILDTALIDLYSKCQK-------------------------------VEV 272
V R L+ +++L+ AL+D+Y+KC + VE
Sbjct: 278 MVKRDRLRDDMVLNNALVDMYAKCGRTWEARCIFDSMPSRSVVSETSILAGYAKSANVED 337
Query: 273 AQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVI 332
AQ VF M ++N++ WN +I + +G+ EE I+LF L SI P T+ V+
Sbjct: 338 AQVVFSQMVEKNVIAWNVLIAAYAQNGEEEEAIRLFVQLKR-----DSIWPTHYTYGNVL 392
Query: 333 CACVRAELLTEGRKYFRQMI------DFYKIKPNFAHYWCMANLYAGAELTEEAEEILRK 386
AC +L G++ ++ DF F + ++Y ++ ++ +
Sbjct: 393 NACGNIAVLQLGQQAHVHVLKEGFRFDFGPESDVFVGN-SLVDMYLKTGSIDDGAKVFER 451
Query: 387 MPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERL 420
M DN+S+ + M V R + A+ + ER+
Sbjct: 452 MAA-RDNVSWNA-MIVGYAQNGRAKDALHLFERM 483
Score = 52.4 bits (124), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 50/100 (50%), Gaps = 9/100 (9%)
Query: 238 GRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCI 297
R+ HG +++ + L L+ Y++ ++ A+RVFD + RN +NA++ +
Sbjct: 36 ARAAHGCVLKSPVAGETFLLNTLVSTYARLGRLREARRVFDGIPLRNTFSYNALLSAYAR 95
Query: 298 HGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVR 337
G+P+E LF A+ + PD+ ++ V+ A R
Sbjct: 96 LGRPDEARALFEAIPD---------PDQCSYNAVVAALAR 126
Score = 42.0 bits (97), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 45/221 (20%), Positives = 93/221 (42%), Gaps = 14/221 (6%)
Query: 6 QIQAHLITSGLFFN-----NSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIK 60
Q H++ G F+ + F +L+ GS D VF+ + NA+I
Sbjct: 406 QAHVHVLKEGFRFDFGPESDVFVGNSLVDMYLKTGSIDDGAKVFERMAARDNVSWNAMIV 465
Query: 61 AYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERG-GMCHGLALKNGVD 119
Y+ + + + +M+ + P+S T + + +C +G V+ G H + +G+
Sbjct: 466 GYAQNGRAKDALHLFERMLCSNENPDSVTMIGVLSACGHSGLVDEGRRHFHFMTEDHGIT 525
Query: 120 FELPVMNSLINMYGCFGAMDCARNMFVQM-SPRDLISWNSIVSG-----HVRSGDMSAAH 173
++++ G G + A + M + D + W S++ +V G+ +A
Sbjct: 526 PSRDHYTCMVDLLGRAGHLKEAEELIKDMPTEPDSVLWASLLGACRLHKNVELGERTAG- 584
Query: 174 ELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSG 214
LF++ PE N + ++ + Y++ G ++ R M G
Sbjct: 585 RLFELDPE-NSGPYVLLSNMYAEMGKWADVFRVRRSMKDRG 624
>gi|296089786|emb|CBI39605.3| unnamed protein product [Vitis vinifera]
Length = 624
Score = 251 bits (641), Expect = 6e-64, Method: Compositional matrix adjust.
Identities = 147/493 (29%), Positives = 250/493 (50%), Gaps = 62/493 (12%)
Query: 1 MKQLLQIQAHLITSGLFFNNSFWTINLLKHSADFGSPDY-----TVLVFKCINNPGTFCV 55
+ L Q A ++ +G +S+ +L+K A+ + Y ++ VF + P F
Sbjct: 68 LHHLKQAHALILRTG-HLQDSYIAGSLVKSYANVSTNRYLSFESSLRVFDFVRKPNVFLW 126
Query: 56 NAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALK 115
N +IK + P + ++ Y +M+ F PN YT+ ++ +C+ G V G H +K
Sbjct: 127 NCMIKVCIENNEPFKAILLYYEMMVAHFRPNKYTYPAVLKACSDAGVVAEGVQVHAHLVK 186
Query: 116 NGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHEL 175
+G+ + +++S I MY FG + AR + + G++ A
Sbjct: 187 HGLGGDGHILSSAIRMYASFGRLVEARRILDD-----------------KGGEVDAV--- 226
Query: 176 FDIMPERNVVSWNIMISGYSKSGNPGC---SLKLFREMMKSGFRGNDKTMASVLTACGRS 232
MP+R GC +L++F +M K R + SVL+AC
Sbjct: 227 --CMPDRK-----------------GCFMEALEIFHQMQKEKIRPRKFVLPSVLSACANL 267
Query: 233 ARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMI 292
++GR +H Y R S++ + +L T+L+D+Y+KC ++++A VF+ M+++ + WNAMI
Sbjct: 268 GALDQGRWIHTYAKRNSIQLDGVLGTSLVDMYAKCGRIDLAWEVFEKMSNKEVSSWNAMI 327
Query: 293 LGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMI 352
G +HG+ E+ I LF+ + I+P+EITF+GV+ AC L+ +G F M
Sbjct: 328 GGLAMHGRAEDAIDLFSKM--------DINPNEITFVGVLNACAHGGLVQKGLTIFNSMR 379
Query: 353 DFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQG 412
Y ++P HY C+ +L A L EAE+++ +P + +W +LL CR G
Sbjct: 380 KEYGVEPQIEHYGCIVDLLGRAGLLTEAEKVVSSIPTEPT-----PAVWGALLGACRKHG 434
Query: 413 AVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLV 472
V + ER+ K ++++PQ+ RY L N+YA AG+WE+V VR+LMK+R + PG ++
Sbjct: 435 NVELGERVGKILLELEPQNSGRYTLLSNIYAKAGRWEEVGEVRKLMKERGIKTTPGTSII 494
Query: 473 DL-KEVVEKLKVG 484
DL + V K +G
Sbjct: 495 DLGRGEVHKFIIG 507
>gi|449454143|ref|XP_004144815.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g09190-like [Cucumis sativus]
gi|449490933|ref|XP_004158752.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g09190-like [Cucumis sativus]
Length = 484
Score = 251 bits (640), Expect = 8e-64, Method: Compositional matrix adjust.
Identities = 143/470 (30%), Positives = 241/470 (51%), Gaps = 18/470 (3%)
Query: 3 QLLQIQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAY 62
L QI AH + GL +N + + A F Y +F +NP F N++IKA+
Sbjct: 24 HLTQIHAHFLRHGLHQSNQILA-HFISVCASFNRIAYADRLFSQSHNPNIFLFNSIIKAH 82
Query: 63 SNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFEL 122
S S Q ++ + M + +P+ YTF L SCA G + G
Sbjct: 83 SLSVPFHQSLLLFSSMKNHRIVPDQYTFAPLLKSCANLCEYSLGQCVISEVFRRGFYCFG 142
Query: 123 PVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPER 182
+ ++ +Y C M+ A MF +MS RD++ WN ++ G ++G++ LF M ER
Sbjct: 143 SIRIGVVELYVCCEKMEDAWKMFDEMSHRDVVVWNLMIRGFCKTGNVDFGLCLFRQMSER 202
Query: 183 NVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVH 242
++VSWN +IS +++ +L+LF++M + GF+ ++ T+ ++L C R G+ +H
Sbjct: 203 SLVSWNTIISCLAQNRRDVEALELFQQMEEHGFKPDEVTVVTMLPVCSRLGALEVGQRIH 262
Query: 243 GYTVRTSLKPNII----LDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIH 298
Y S K N++ + +LID Y KC +E A +F M +++V WN +ILG ++
Sbjct: 263 SY---ASSKGNLVGITTVGNSLIDFYCKCGNIEKAYNIFQKMTCKSVVSWNTIILGFALN 319
Query: 299 GKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIK 358
GK E I LF + + P++ TF+ V+ ACV + LL +GR+ F M + Y+I+
Sbjct: 320 GKGEFAIDLFMEMRKEY-----LKPNDATFVAVLTACVHSGLLEKGRELFSSMAEDYEIQ 374
Query: 359 PNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVE 418
P H+ CM +L EEA ++++ MP M + +W ++L CR G + + E
Sbjct: 375 PKLEHFGCMVDLLGRGGCVEEAHKLIKSMP-----MQPNATLWGAVLGACRTHGNLKLAE 429
Query: 419 RLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPG 468
K + ++P + Y L N+ A G+WE+V VR+ M+++ + + PG
Sbjct: 430 MAVKELISLEPWNSGNYVLLSNMLAEEGRWEEVENVRQWMREKSVKKAPG 479
>gi|357477567|ref|XP_003609069.1| Pentatricopeptide repeat protein [Medicago truncatula]
gi|355510124|gb|AES91266.1| Pentatricopeptide repeat protein [Medicago truncatula]
Length = 611
Score = 251 bits (640), Expect = 8e-64, Method: Compositional matrix adjust.
Identities = 150/511 (29%), Positives = 264/511 (51%), Gaps = 35/511 (6%)
Query: 1 MKQLLQIQAHLITSGLFFNNSFWTINLLKHSADFGSP--DYTVLVFKCINNPGTFCVNAV 58
+K QI HL +GL + F+ LL + +Y++ +F NP TF N +
Sbjct: 23 LKTTKQIHTHLYVTGLHTHPFFFGKLLLNCAVSISDHVLNYSLRLFHHFPNPDTFMYNTL 82
Query: 59 IKAYSNSCVPDQGVVFYLQMIKN-GFMPNSYTFVSLFGSCAKTGCVERGGM-CHGLALKN 116
I++ S+S P + ++Q++++ +P+S++F A GC +R G+ H A ++
Sbjct: 83 IRSLSHSSTPLSSLQPFIQLLRHPTLLPDSFSFAFTLKGIANDGCSKRQGIQLHSHAFRH 142
Query: 117 GVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSG-------DM 169
G D + V +LI+MY G + AR +F +MS ++++WN++V+ R G
Sbjct: 143 GFDDHIFVGTTLISMYAECGCYEYARKVFDEMSQPNVVAWNAVVTACFRCGMWRVLGVSF 202
Query: 170 SAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTAC 229
+F M R+ SW+ MI G++KSG+ + F+E+++ R ++ ++ VL+AC
Sbjct: 203 GWREVVFCEMKMRDDASWSTMIVGFAKSGSFHDAFGFFKELLRDRNRPSEVSLTGVLSAC 262
Query: 230 GRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWN 289
++ F G+ +HG+ + + ++ ALID YSKC V++A+ VF+
Sbjct: 263 AQAGAFEFGKILHGFMEKAGFLCIVSVNNALIDTYSKCGNVDMAKLVFN----------- 311
Query: 290 AMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFR 349
+ +HG+ +E I++F + V PD +TFI ++ AC + L+ +G F
Sbjct: 312 ---ISLAMHGRADEAIRVFHEMEESGV-----RPDGVTFISLLYACSHSGLVEQGCALFS 363
Query: 350 QMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCR 409
+M +FY I+P HY CM +LY A ++A E +R+MP + I+W +LL C
Sbjct: 364 KMRNFYGIEPAIEHYGCMVDLYGRAARLQKAYEFIRQMP-----ILPNVIIWRTLLGACS 418
Query: 410 FQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGC 469
G + + E + +MDP + + L NVYAVAG+W+DVA +R M ++ M ++PG
Sbjct: 419 IHGNIELAELVKARLAEMDPNNSGDHVLLSNVYAVAGKWKDVAGIRRTMIEQSMKKIPGW 478
Query: 470 RLVDLKEVVEKLKVGHFWRGGMKEEVNKMME 500
++++ +V G KE +K+ E
Sbjct: 479 SMIEIDKVNYGFVAGEKPNEVTKEAHDKLRE 509
>gi|359492337|ref|XP_002284789.2| PREDICTED: pentatricopeptide repeat-containing protein At5g40410,
mitochondrial-like [Vitis vinifera]
Length = 694
Score = 251 bits (640), Expect = 8e-64, Method: Compositional matrix adjust.
Identities = 132/405 (32%), Positives = 213/405 (52%), Gaps = 41/405 (10%)
Query: 80 KNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMD 139
++G PN T +S+ +CA G ++ G HG+ +K G+ + V+NSLINMYG G +D
Sbjct: 214 ESGRQPNEVTLLSVVSACADMGALDEGKSLHGVVVKLGMSGKAKVVNSLINMYGKLGFLD 273
Query: 140 CARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGN 199
A +F +M R L+SWNS+V H +GY++ G
Sbjct: 274 AASQLFEEMPVRSLVSWNSMVVIHNH--------------------------NGYAEKG- 306
Query: 200 PGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTA 259
+ LF M ++G + TM ++L AC + + S+H Y R +II+ TA
Sbjct: 307 ----MDLFNLMKRAGINPDQATMVALLRACTDTGLGRQAESIHAYIHRCGFNADIIIATA 362
Query: 260 LIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGG 319
L++LY+K ++ ++ +F+ + DR+ + W AM+ G+ +H E IKLF +V V
Sbjct: 363 LLNLYAKLGRLNASEDIFEEIKDRDRIAWTAMLAGYAVHACGREAIKLFDLMVKEGV--- 419
Query: 320 SISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEE 379
D +TF ++ AC + L+ EG+KYF M + Y+++P HY CM +L + E+
Sbjct: 420 --EVDHVTFTHLLSACSHSGLVEEGKKYFEIMSEVYRVEPRLDHYSCMVDLLGRSGRLED 477
Query: 380 AEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLL 439
A E+++ MP M S +W +LL CR G V + + +A+ + +DP D Y L
Sbjct: 478 AYELIKSMP-----MEPSSGVWGALLGACRVYGNVELGKEVAEQLLSLDPSDHRNYIMLS 532
Query: 440 NVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLKEVVEKLKVG 484
N+Y+ AG W D ++VR LMK+RR+ R PGC ++ + + VG
Sbjct: 533 NIYSAAGLWRDASKVRALMKERRLTRNPGCSFIEHGNKIHRFVVG 577
Score = 116 bits (291), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 87/309 (28%), Positives = 160/309 (51%), Gaps = 20/309 (6%)
Query: 157 NSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLF-REMMKSGF 215
+ +VS + + G A LFD MP +++VSWN ++SG S G G L F R +SG
Sbjct: 158 DRLVSMYFKLGYDEDAQRLFDEMPNKDLVSWNSLMSGLSGRGYLGACLNAFCRMRTESGR 217
Query: 216 RGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQR 275
+ N+ T+ SV++AC +EG+S+HG V+ + + +LI++Y K ++ A +
Sbjct: 218 QPNEVTLLSVVSACADMGALDEGKSLHGVVVKLGMSGKAKVVNSLINMYGKLGFLDAASQ 277
Query: 276 VFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICAC 335
+F+ M R+LV WN+M++ H +G E+G+ LF + I+PD+ T + ++ AC
Sbjct: 278 LFEEMPVRSLVSWNSMVVIHNHNGYAEKGMDLFNLMKR-----AGINPDQATMVALLRAC 332
Query: 336 VRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMA----NLYAGAELTEEAEEILRKMPEDN 391
L GR+ + I Y + F +A NLYA +E+I ++ +D
Sbjct: 333 TDTGL---GRQ--AESIHAYIHRCGFNADIIIATALLNLYAKLGRLNASEDIFEEI-KDR 386
Query: 392 DNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDV 451
D +++ +++ + C + A+ + + + K V++D F+ LL+ + +G E+
Sbjct: 387 DRIAWTAMLAGYAVHACGRE-AIKLFDLMVKEGVEVDHVTFTH---LLSACSHSGLVEEG 442
Query: 452 ARVRELMKK 460
+ E+M +
Sbjct: 443 KKYFEIMSE 451
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 53/261 (20%), Positives = 116/261 (44%), Gaps = 35/261 (13%)
Query: 56 NAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALK 115
N+++ ++++ ++G+ + M + G P+ T V+L +C TG + H +
Sbjct: 291 NSMVVIHNHNGYAEKGMDLFNLMKRAGINPDQATMVALLRACTDTGLGRQAESIHAYIHR 350
Query: 116 NGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHEL 175
G + ++ + +L+N+Y G ++ + ++F ++ RD I+W ++++G+ A +L
Sbjct: 351 CGFNADIIIATALLNLYAKLGRLNASEDIFEEIKDRDRIAWTAMLAGYAVHACGREAIKL 410
Query: 176 FDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARF 235
FD+ M+K G + T +L+AC S
Sbjct: 411 FDL-------------------------------MVKEGVEVDHVTFTHLLSACSHSGLV 439
Query: 236 NEGRSVHGYTVRT-SLKPNIILDTALIDLYSKCQKVEVAQRVFDSMA-DRNLVCWNAMIL 293
EG+ ++P + + ++DL + ++E A + SM + + W A+ L
Sbjct: 440 EEGKKYFEIMSEVYRVEPRLDHYSCMVDLLGRSGRLEDAYELIKSMPMEPSSGVWGAL-L 498
Query: 294 GHC-IHGKPEEGIKLFTALVN 313
G C ++G E G ++ L++
Sbjct: 499 GACRVYGNVELGKEVAEQLLS 519
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 61/249 (24%), Positives = 106/249 (42%), Gaps = 23/249 (9%)
Query: 144 MFVQMSPRDLISWNSIVS----GHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGN 199
+F Q R + WNSIVS G S + S A D++P + +N N
Sbjct: 54 VFNQQLTRLAVPWNSIVSPVRCGTSISHNRSFAFRHTDLIP-KQFKRFNT---------N 103
Query: 200 PGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTA 259
GC + FRE S F + S++ A + ++H +++ + +
Sbjct: 104 KGCCI--FRE--ASQFIVVYSIVQSLVFAISSCTSVSYCSAIHARVIKSLNYSDGFIGDR 159
Query: 260 LIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGG 319
L+ +Y K E AQR+FD M +++LV WN+++ G + G+ G L T +G
Sbjct: 160 LVSMYFKLGYDEDAQRLFDEMPNKDLVSWNSLMSG--LSGRGYLGACLNAFCRMRTESGR 217
Query: 320 SISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEE 379
P+E+T + V+ AC L EG+ ++ + + N+Y +
Sbjct: 218 --QPNEVTLLSVVSACADMGALDEGKSLHGVVVKL-GMSGKAKVVNSLINMYGKLGFLDA 274
Query: 380 AEEILRKMP 388
A ++ +MP
Sbjct: 275 ASQLFEEMP 283
>gi|326498517|dbj|BAJ98686.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 647
Score = 251 bits (640), Expect = 8e-64, Method: Compositional matrix adjust.
Identities = 132/387 (34%), Positives = 219/387 (56%), Gaps = 9/387 (2%)
Query: 90 FVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMS 149
VS+ +CA++ + G +CHGL ++ G+ L + N LI+MY C + AR +F
Sbjct: 269 MVSVVAACAQSEVIRNGELCHGLVIRAGLCSLLNIQNVLIHMYSCCLDVVAARRLFDSGD 328
Query: 150 PRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFRE 209
D SWNS+++G++++G + A LF MP+++ VSW+ MISG ++ +L +F
Sbjct: 329 CLDQFSWNSMIAGYLKNGHVENAMTLFSAMPDKDNVSWSTMISGCVQNNQSSHALTVFDN 388
Query: 210 MMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQK 269
M G R ++ T+ SV++AC + +G+SVH Y + ++L T+LID+Y KC
Sbjct: 389 MRAQGVRPDEVTIVSVISACTNLSALEKGKSVHDYVRQNKCYITLVLGTSLIDMYMKCGY 448
Query: 270 VEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFI 329
+E A VF+ M ++ CWNA+I+G ++G + +++F+ + A + P+EITF
Sbjct: 449 LEAAMDVFNIMEEKGAPCWNAVIVGLAMNGLVTKSLEIFSEM----EASSTAIPNEITFT 504
Query: 330 GVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPE 389
GV+ AC A L+ EGR +F+ M Y+I PN HY CM +L A +EAE+++ MP
Sbjct: 505 GVLSACRHAGLVEEGRHFFKLMQHKYQIVPNIRHYGCMVDLLGRAGYVKEAEDLIESMP- 563
Query: 390 DNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWE 449
MS + W +LL C G + ER+ + V++DP+ L N+YA G W+
Sbjct: 564 ----MSPDVPAWGALLGACWKHGENEVGERVGRKLVNLDPRHDGFQTMLSNIYAKEGMWQ 619
Query: 450 DVARVRELMKKRRMGRMPGCRLVDLKE 476
V +R+ MK+R + ++ G +V++
Sbjct: 620 SVNDLRDSMKQRHVPKVSGYSVVEMSH 646
Score = 137 bits (344), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 107/413 (25%), Positives = 178/413 (43%), Gaps = 66/413 (15%)
Query: 1 MKQLLQIQAHLITSGLFFNNSFWTINLLKHSADFGSP---DYTVLVFKCINNPGTFCVNA 57
++ LLQI I SGL + + LL SA P ++ + + + P F N
Sbjct: 17 VRHLLQIHGQFIASGLLADAFAASRLLLFTSATRLLPFPIHHSFRLLRLVRCPNAFSCNT 76
Query: 58 VIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNG 117
++KA + +P + Y + + P++YT L +CA V G A+++G
Sbjct: 77 LLKAALLAGMPHLCLPLYTSLPAS---PDTYTHPILAAACAARRDVSEGRQVQSHAIRHG 133
Query: 118 VDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFD 177
+L + N+L++MY G + AR +F D +SWN+I++ +V +GD+ A +F
Sbjct: 134 FGDDLYLRNALMHMYSVCGCLWDARRVFDAGPVWDAVSWNTILAAYVHAGDVDQAVGVFA 193
Query: 178 IMPERN-------------------------------VVSWNIMISGYSKSGNPGCSLKL 206
MP+RN + +W MIS + ++ +L +
Sbjct: 194 RMPKRNATAVSSMVSLFGRRGMVEEARGVFDEAECRDIFTWTAMISCFERNDMFAEALHM 253
Query: 207 FREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSK 266
F M + + ++ M SV+ AC +S G HG +R L + + LI +YS
Sbjct: 254 FSCMRREMWPVDEALMVSVVAACAQSEVIRNGELCHGLVIRAGLCSLLNIQNVLIHMYSC 313
Query: 267 CQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTA-----------LVNGT 315
C V A+R+FDS + WN+MI G+ +G E + LF+A +++G
Sbjct: 314 CLDVVAARRLFDSGDCLDQFSWNSMIAGYLKNGHVENAMTLFSAMPDKDNVSWSTMISGC 373
Query: 316 VAGGS---------------ISPDEITFIGVICACVRAELLTEGRK---YFRQ 350
V + PDE+T + VI AC L +G+ Y RQ
Sbjct: 374 VQNNQSSHALTVFDNMRAQGVRPDEVTIVSVISACTNLSALEKGKSVHDYVRQ 426
>gi|347954522|gb|AEP33761.1| organelle transcript processing 82, partial [Crucihimalaya
wallichii]
Length = 710
Score = 251 bits (640), Expect = 8e-64, Method: Compositional matrix adjust.
Identities = 137/432 (31%), Positives = 226/432 (52%), Gaps = 45/432 (10%)
Query: 56 NAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALK 115
NA+I Y+ + + + + +M+K P+ T VS+ +CA++ +E G H
Sbjct: 204 NAMISGYAETGNNKEALELFKEMMKTNVRPDESTMVSVVSACAQSASIELGRQVHSWIDD 263
Query: 116 NGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHEL 175
+G L ++N+LI++Y ++ G++ A L
Sbjct: 264 HGFGSNLKIVNALIDLY-------------------------------IKCGEVETACGL 292
Query: 176 FDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARF 235
F+ + ++V+SWN +I GY+ +L LF+EM++SG ND TM S+L AC
Sbjct: 293 FEGLSYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNDVTMLSILPACAHLGAI 352
Query: 236 NEGRSVHGYTVRTSLKPNIILD---TALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMI 292
GR +H Y + LK T+LID+Y+KC +E AQ+VFDS+ +R+L WNAMI
Sbjct: 353 EIGRWIHVY-INKRLKGVANASSHRTSLIDMYAKCGDIEAAQQVFDSILNRSLSSWNAMI 411
Query: 293 LGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMI 352
G +HG+ +F+ + I PD+ITF+G++ AC + +L GR FR M
Sbjct: 412 FGFAMHGRANAAFDIFSRMRKN-----EIEPDDITFVGLLSACSHSGMLDLGRHIFRSMK 466
Query: 353 DFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQG 412
+ YKI P HY CM +L + L +EAEE++ M M + ++W SLL C+
Sbjct: 467 EDYKITPKLEHYGCMIDLLGHSGLFKEAEEMINTM-----EMEPDGVIWCSLLKACKMYA 521
Query: 413 AVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLV 472
V + E A++ + ++P++ Y L N+YA AG+W +VA++R L+ + M ++PGC +
Sbjct: 522 NVELGESYAQNLIKIEPKNPGSYVLLSNIYATAGRWNEVAKIRALLNDKGMKKVPGCSSI 581
Query: 473 DLKEVVEKLKVG 484
++ VV + +G
Sbjct: 582 EIDSVVHEFIIG 593
Score = 221 bits (563), Expect = 7e-55, Method: Compositional matrix adjust.
Identities = 136/436 (31%), Positives = 228/436 (52%), Gaps = 12/436 (2%)
Query: 1 MKQLLQIQAHLITSGLFFNNSFWT--INLLKHSADFGSPDYTVLVFKCINNPGTFCVNAV 58
++ L I A +I +GL N + I S F Y + VF+ I P N +
Sbjct: 15 LQSLRMIHAQMIKTGLHNTNYALSKLIEFCVLSPHFDGLPYAISVFETIQEPNLLIWNTM 74
Query: 59 IKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGV 118
+ ++ S P + Y+ MI G +PN YTF L SCAK+ G HG LK G
Sbjct: 75 FRGHALSSDPVSALYLYVCMISLGLLPNCYTFPFLLKSCAKSKAFREGQQIHGHVLKLGY 134
Query: 119 DFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDI 178
D +L V SLI+MY G ++ AR +F Q S RD++S+ ++++G+ G +++A ++FD
Sbjct: 135 DLDLYVHTSLISMYVQNGRLEDARKVFDQSSHRDVVSYTALITGYASKGYIASAQKMFDE 194
Query: 179 MPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEG 238
+P ++VVSWN MISGY+++GN +L+LF+EMMK+ R ++ TM SV++AC +SA G
Sbjct: 195 IPIKDVVSWNAMISGYAETGNNKEALELFKEMMKTNVRPDESTMVSVVSACAQSASIELG 254
Query: 239 RSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIH 298
R VH + N+ + ALIDLY KC +VE A +F+ ++ ++++ WN +I G+
Sbjct: 255 RQVHSWIDDHGFGSNLKIVNALIDLYIKCGEVETACGLFEGLSYKDVISWNTLIGGYTHM 314
Query: 299 GKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIK 358
+E + LF ++ SP+++T + ++ AC + GR + K
Sbjct: 315 NLYKEALLLFQEMLR-----SGESPNDVTMLSILPACAHLGAIEIGRWIHVYINKRLKGV 369
Query: 359 PNF-AHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMV 417
N +H + ++YA E A+++ + N ++S + M R A +
Sbjct: 370 ANASSHRTSLIDMYAKCGDIEAAQQVFDSIL--NRSLSSWNAMIFGFAMHGRANAAFDIF 427
Query: 418 ERLAKSFVDMDPQDFS 433
R+ K+ +++P D +
Sbjct: 428 SRMRKN--EIEPDDIT 441
>gi|356544269|ref|XP_003540576.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Glycine max]
Length = 522
Score = 251 bits (640), Expect = 8e-64, Method: Compositional matrix adjust.
Identities = 160/489 (32%), Positives = 250/489 (51%), Gaps = 26/489 (5%)
Query: 1 MKQLLQIQAHLITSGLFFNNSFWTINLLKHSADFGSPD--YTVLVFKCINNPGTFCVNAV 58
M+++ QI H IT GL +F + LL A + D Y +F I P F N +
Sbjct: 17 MREMKQIHGHAITHGLA-RFAFISSKLL---AFYARSDLRYAHTLFSHIPFPNLFDYNTI 72
Query: 59 IKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGV 118
I A+S P +F++QM+ PNS TF L + + H ++ G
Sbjct: 73 ITAFS----PHYSSLFFIQMLNAAVSPNSRTFSLLLSKSSPSLPFLH--QLHSHIIRRGH 126
Query: 119 DFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDI 178
+ V+ SL+ Y G+ AR +F Q +++ W S+V+G+ +G ++ A LFD
Sbjct: 127 VSDFYVITSLLAAYSNHGSTRAARRLFDQSPYKNVACWTSLVTGYCNNGLVNDARNLFDA 186
Query: 179 MPER--NVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFN 236
+PER N VS++ M+SGY K+G ++LFRE+ + N+ +ASVL+AC F
Sbjct: 187 IPERERNDVSYSAMVSGYVKNGCFREGIQLFRELKDRNVKPNNSLLASVLSACASVGAFE 246
Query: 237 EGRSVHGYTV--RTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILG 294
EG+ +H Y ++ + L TALID Y+KC VE AQRVF +M +++ W+AM+LG
Sbjct: 247 EGKWIHAYVDQNKSQCYYELELGTALIDFYTKCGCVEPAQRVFGNMKTKDVAAWSAMVLG 306
Query: 295 HCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDF 354
I+ K +E ++LF + P+ +TFIGV+ AC +L E K F M D
Sbjct: 307 LAINAKNQEALELFEEM-----EKVGPRPNAVTFIGVLTACNHKDLFGEALKLFGYMSDK 361
Query: 355 YKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAV 414
Y I + HY C+ ++ A + EEA E ++ M + D ++W SLL+ C +
Sbjct: 362 YGIVASIEHYGCVVDVLARSGKIEEALEFIKSMEVEPD-----GVIWGSLLNGCFLHNNI 416
Query: 415 AMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDL 474
+ ++ K V+++P RY L NVYA G+WE V R+ MK R + + G +++
Sbjct: 417 ELGHKVGKYLVELEPGHGGRYVLLSNVYATMGKWEAVLETRKFMKDRGVPAVSGSSFIEI 476
Query: 475 KEVVEKLKV 483
+ V K V
Sbjct: 477 HQTVHKFLV 485
>gi|359478499|ref|XP_003632122.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Vitis vinifera]
Length = 577
Score = 251 bits (640), Expect = 8e-64, Method: Compositional matrix adjust.
Identities = 139/470 (29%), Positives = 232/470 (49%), Gaps = 73/470 (15%)
Query: 78 MIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGA 137
M++N +P+ +F + SCA +G + G H +K G ++++ + L++ Y G
Sbjct: 1 MLRNDVLPSKTSFSLILRSCAISGEAQLGEAFHCQIMKMGFEYDMILQTGLLDFYAKVGD 60
Query: 138 MDCA-------------------------------RNMFVQMSPR--------------- 151
+ CA RN+F M+ R
Sbjct: 61 LKCAKRVFMGMPRRDVVANNAMISALSKHGYVEEARNLFDNMTERNSCSWNSMITCYCKL 120
Query: 152 ----------------DLISWNSIVSGHVRSGDMSAAHELFDIM-PERNVVSWNIMISGY 194
D++SWN+I+ G+ +S + AA ELF +M RN V+WN MIS Y
Sbjct: 121 GDINSARLMFDCNPVKDVVSWNAIIDGYCKSKQLVAAQELFLLMGSARNSVTWNTMISAY 180
Query: 195 SKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNI 254
+ G G ++ +F++M + + TM S+L+AC + G +HGY LK ++
Sbjct: 181 VQCGEFGTAISMFQQMQSENVKPTEVTMVSLLSACAHLGALDMGEWIHGYIRTKRLKIDV 240
Query: 255 ILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNG 314
+L ALID+Y KC +E A VF ++ +N+ CWN++I+G ++G+ EE I F +
Sbjct: 241 VLGNALIDMYCKCGALEAAIDVFHGLSRKNIFCWNSIIVGLGMNGRGEEAIAAFIVM--- 297
Query: 315 TVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGA 374
I PD +TF+G++ C + LL+ G++YF +M+ Y ++P HY CM +L A
Sbjct: 298 --EKEGIKPDGVTFVGILSGCSHSGLLSAGQRYFSEMLGVYGLEPGVEHYGCMVDLLGRA 355
Query: 375 ELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSR 434
+EA E++R MP M S++ SLL C+ + E++ + +++DP D
Sbjct: 356 GYLKEALELIRAMP-----MKPNSMVLGSLLRACQIHKDTKLGEQVTQQLLELDPCDGGN 410
Query: 435 YQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLKEVVEKLKVG 484
Y FL N+YA +W+DV R+LM KR + + PGC +++ +V + G
Sbjct: 411 YVFLSNLYASLSRWDDVNTCRKLMIKRGVHKTPGCSSIEVNNIVHEFVAG 460
Score = 38.5 bits (88), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 17/72 (23%), Positives = 35/72 (48%)
Query: 35 GSPDYTVLVFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLF 94
G+ + + VF ++ FC N++I + ++ + ++ M K G P+ TFV +
Sbjct: 254 GALEAAIDVFHGLSRKNIFCWNSIIVGLGMNGRGEEAIAAFIVMEKEGIKPDGVTFVGIL 313
Query: 95 GSCAKTGCVERG 106
C+ +G + G
Sbjct: 314 SGCSHSGLLSAG 325
>gi|302141697|emb|CBI18900.3| unnamed protein product [Vitis vinifera]
Length = 637
Score = 250 bits (639), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 132/405 (32%), Positives = 213/405 (52%), Gaps = 41/405 (10%)
Query: 80 KNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMD 139
++G PN T +S+ +CA G ++ G HG+ +K G+ + V+NSLINMYG G +D
Sbjct: 157 ESGRQPNEVTLLSVVSACADMGALDEGKSLHGVVVKLGMSGKAKVVNSLINMYGKLGFLD 216
Query: 140 CARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGN 199
A +F +M R L+SWNS+V H +GY++ G
Sbjct: 217 AASQLFEEMPVRSLVSWNSMVVIHNH--------------------------NGYAEKG- 249
Query: 200 PGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTA 259
+ LF M ++G + TM ++L AC + + S+H Y R +II+ TA
Sbjct: 250 ----MDLFNLMKRAGINPDQATMVALLRACTDTGLGRQAESIHAYIHRCGFNADIIIATA 305
Query: 260 LIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGG 319
L++LY+K ++ ++ +F+ + DR+ + W AM+ G+ +H E IKLF +V V
Sbjct: 306 LLNLYAKLGRLNASEDIFEEIKDRDRIAWTAMLAGYAVHACGREAIKLFDLMVKEGV--- 362
Query: 320 SISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEE 379
D +TF ++ AC + L+ EG+KYF M + Y+++P HY CM +L + E+
Sbjct: 363 --EVDHVTFTHLLSACSHSGLVEEGKKYFEIMSEVYRVEPRLDHYSCMVDLLGRSGRLED 420
Query: 380 AEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLL 439
A E+++ MP M S +W +LL CR G V + + +A+ + +DP D Y L
Sbjct: 421 AYELIKSMP-----MEPSSGVWGALLGACRVYGNVELGKEVAEQLLSLDPSDHRNYIMLS 475
Query: 440 NVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLKEVVEKLKVG 484
N+Y+ AG W D ++VR LMK+RR+ R PGC ++ + + VG
Sbjct: 476 NIYSAAGLWRDASKVRALMKERRLTRNPGCSFIEHGNKIHRFVVG 520
Score = 116 bits (290), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 87/309 (28%), Positives = 160/309 (51%), Gaps = 20/309 (6%)
Query: 157 NSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLF-REMMKSGF 215
+ +VS + + G A LFD MP +++VSWN ++SG S G G L F R +SG
Sbjct: 101 DRLVSMYFKLGYDEDAQRLFDEMPNKDLVSWNSLMSGLSGRGYLGACLNAFCRMRTESGR 160
Query: 216 RGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQR 275
+ N+ T+ SV++AC +EG+S+HG V+ + + +LI++Y K ++ A +
Sbjct: 161 QPNEVTLLSVVSACADMGALDEGKSLHGVVVKLGMSGKAKVVNSLINMYGKLGFLDAASQ 220
Query: 276 VFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICAC 335
+F+ M R+LV WN+M++ H +G E+G+ LF + I+PD+ T + ++ AC
Sbjct: 221 LFEEMPVRSLVSWNSMVVIHNHNGYAEKGMDLFNLMKR-----AGINPDQATMVALLRAC 275
Query: 336 VRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMA----NLYAGAELTEEAEEILRKMPEDN 391
L GR+ + I Y + F +A NLYA +E+I ++ +D
Sbjct: 276 TDTGL---GRQ--AESIHAYIHRCGFNADIIIATALLNLYAKLGRLNASEDIFEEI-KDR 329
Query: 392 DNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDV 451
D +++ +++ + C + A+ + + + K V++D F+ LL+ + +G E+
Sbjct: 330 DRIAWTAMLAGYAVHACGRE-AIKLFDLMVKEGVEVDHVTFTH---LLSACSHSGLVEEG 385
Query: 452 ARVRELMKK 460
+ E+M +
Sbjct: 386 KKYFEIMSE 394
Score = 69.3 bits (168), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 53/261 (20%), Positives = 116/261 (44%), Gaps = 35/261 (13%)
Query: 56 NAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALK 115
N+++ ++++ ++G+ + M + G P+ T V+L +C TG + H +
Sbjct: 234 NSMVVIHNHNGYAEKGMDLFNLMKRAGINPDQATMVALLRACTDTGLGRQAESIHAYIHR 293
Query: 116 NGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHEL 175
G + ++ + +L+N+Y G ++ + ++F ++ RD I+W ++++G+ A +L
Sbjct: 294 CGFNADIIIATALLNLYAKLGRLNASEDIFEEIKDRDRIAWTAMLAGYAVHACGREAIKL 353
Query: 176 FDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARF 235
FD+ M+K G + T +L+AC S
Sbjct: 354 FDL-------------------------------MVKEGVEVDHVTFTHLLSACSHSGLV 382
Query: 236 NEGRSVHGYTVRT-SLKPNIILDTALIDLYSKCQKVEVAQRVFDSMA-DRNLVCWNAMIL 293
EG+ ++P + + ++DL + ++E A + SM + + W A+ L
Sbjct: 383 EEGKKYFEIMSEVYRVEPRLDHYSCMVDLLGRSGRLEDAYELIKSMPMEPSSGVWGAL-L 441
Query: 294 GHC-IHGKPEEGIKLFTALVN 313
G C ++G E G ++ L++
Sbjct: 442 GACRVYGNVELGKEVAEQLLS 462
Score = 48.5 bits (114), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 35/149 (23%), Positives = 68/149 (45%), Gaps = 5/149 (3%)
Query: 240 SVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHG 299
++H +++ + + L+ +Y K E AQR+FD M +++LV WN+++ G + G
Sbjct: 83 AIHARVIKSLNYSDGFIGDRLVSMYFKLGYDEDAQRLFDEMPNKDLVSWNSLMSG--LSG 140
Query: 300 KPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKP 359
+ G L T +G P+E+T + V+ AC L EG+ ++ +
Sbjct: 141 RGYLGACLNAFCRMRTESGR--QPNEVTLLSVVSACADMGALDEGKSLHGVVVKL-GMSG 197
Query: 360 NFAHYWCMANLYAGAELTEEAEEILRKMP 388
+ N+Y + A ++ +MP
Sbjct: 198 KAKVVNSLINMYGKLGFLDAASQLFEEMP 226
>gi|297811669|ref|XP_002873718.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297319555|gb|EFH49977.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 548
Score = 250 bits (639), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 156/511 (30%), Positives = 248/511 (48%), Gaps = 52/511 (10%)
Query: 2 KQLLQIQAHLITSGLFFNNSFWTINLLKHSADFGSP---DYTVLVFKCINNPGTFCVNAV 58
+ L+QI A ++ +GL N S + L +SA P Y +F+ I P N V
Sbjct: 26 RTLMQIHAFMVVNGLMSNLS--VVGELIYSASLSVPGALKYAHKLFEEIPKPDVSICNHV 83
Query: 59 IKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGV 118
++ + S P++ V Y +M K G P+ YTF + +C+K G HG +++G
Sbjct: 84 LRGSAQSLKPEKTVALYTEMEKRGVSPDRYTFTFVLKACSKLEWRSNGFAIHGKVVRHGF 143
Query: 119 DFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDI 178
V N+LI + G + A +F + ++W+S+ SG+ + G + A LFD
Sbjct: 144 LLNEYVKNALILFHANCGDLGIASELFDDSAKAHKVAWSSMTSGYAKRGKIDEAMRLFDE 203
Query: 179 MPERNVVSWNI-------------------------------MISGYSKSGNPGCSLKLF 207
MP+++ V+WN+ MISGY G P +L +F
Sbjct: 204 MPDKDQVAWNVMITGCLKCREMDSARELFDRFTEKDVVTWNAMISGYVNCGYPKEALSIF 263
Query: 208 REMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRT-SLKPNIILDT----ALID 262
+EM +G + T+ S+L+AC G+ +H Y + T S+ +I + T ALID
Sbjct: 264 KEMRDAGEHPDVVTILSLLSACAVLGDLETGKRLHIYILETASVSSSIYVGTPIWNALID 323
Query: 263 LYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSIS 322
+Y+KC ++ A VF M DR+L WN +I+G +H E +++F + V
Sbjct: 324 MYAKCGSIDRAIEVFRGMKDRDLSTWNTLIVGLALH-HAEGSVEMFEEMQRLKVW----- 377
Query: 323 PDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEE 382
P+E+TFIGVI AC + + EGRKYF M D Y I+PN HY CM ++ A L EEA
Sbjct: 378 PNEVTFIGVILACSHSGRVDEGRKYFSLMRDMYNIEPNIKHYGCMVDMLGRAGLLEEAFM 437
Query: 383 ILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVY 442
+ M + +I+W +LL C+ G V + + + + M + Y L N+Y
Sbjct: 438 FVESM-----KIEPNAIVWRTLLGACKIYGNVELGKYANEKLLSMRKDESGDYVLLSNIY 492
Query: 443 AVAGQWEDVARVRELMKKRRMGRMPGCRLVD 473
A GQW+ V +VR++ R+ + G L++
Sbjct: 493 ASTGQWDGVQKVRKMFDDTRVKKPTGISLIE 523
>gi|298205062|emb|CBI38358.3| unnamed protein product [Vitis vinifera]
Length = 549
Score = 250 bits (639), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 156/498 (31%), Positives = 242/498 (48%), Gaps = 49/498 (9%)
Query: 1 MKQLLQIQAHLITSGLFFNNSFWTINLLKHSA--DFGSPDYTVLVFKCINNPGTFCVNAV 58
M+ L + A +I GL N + L+ A D G Y +F I P F N++
Sbjct: 1 MRGLKLLHAQIILHGLT-NETLTLGKLISFCAVDDAGDLQYAQRMFDQIPQPNKFMYNSL 59
Query: 59 IKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGV 118
I+ YSNS P V+ + +MI +G PN +T + +C + HGLA+K G+
Sbjct: 60 IRGYSNSDDPIDAVLLFRRMICSGLSPNEFTLPFVLKACGCKSAYWEAVLVHGLAIKLGI 119
Query: 119 DFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLI------------------------ 154
+ V N+LI +Y G + CAR +F ++ + LI
Sbjct: 120 GSLVFVQNALIAVYVVCGLIHCARKLFDDITDKTLIDIIVRNALVDMYAKCGNLHSAQAI 179
Query: 155 ----------SWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSL 204
SW S++S + + G + A ++FD MP +NVVSWN MIS Y + G +L
Sbjct: 180 FDRTQEKNVVSWTSMISAYAQHGSIEVARQIFDQMPGKNVVSWNSMISCYLREGQYREAL 239
Query: 205 KLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLY 264
LF +M S ++ T+ S+L AC + G+ +H Y + + L +LID+Y
Sbjct: 240 DLFNKMRNSRVVPDEATLVSILAACSQLGDLVMGKKIHNYILSNKGAYGVTLYNSLIDMY 299
Query: 265 SKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTAL-VNGTVAGGSISP 323
+KC V A +F M +NLV WN +I +HG E IKLF + +GT+ P
Sbjct: 300 AKCGPVVTALDIFLEMPGKNLVSWNVIIGALALHGCGLEAIKLFEEMQADGTL------P 353
Query: 324 DEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEI 383
DEIT G++ AC + L+ G YF +M Y++ HY CM +L L EA E+
Sbjct: 354 DEITLTGLLSACSHSGLVDMGLYYFDRMGVIYRVPREIEHYACMVDLLGRGGLLGEAIEL 413
Query: 384 LRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYA 443
+ +MP M + ++W +LL CR G V + +++ K ++++P Y + N+Y
Sbjct: 414 IGRMP-----MKPDVVVWGALLGACRIHGNVEIGKQILKQLLELEPHSGGLYVLISNIYW 468
Query: 444 VAGQWEDVARVRELMKKR 461
A +WEDV ++R+LM R
Sbjct: 469 EAQRWEDVKKIRKLMIDR 486
>gi|359482718|ref|XP_002263673.2| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g09950-like [Vitis vinifera]
Length = 1088
Score = 250 bits (639), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 145/507 (28%), Positives = 253/507 (49%), Gaps = 13/507 (2%)
Query: 6 QIQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSNS 65
QI AHLI + + N L+ ++ G +Y +F + + N++I+ Y +
Sbjct: 500 QIHAHLIRANIT-KNIIVETELVHMYSECGRLNYAKEIFNRMAERNAYSWNSMIEGYQQN 558
Query: 66 CVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVM 125
+ + + QM NG P+ ++ S+ SC ++G H ++N ++ E +
Sbjct: 559 GETQEALRLFKQMQLNGIKPDCFSLSSMLSSCVSLSDSQKGRELHNFIVRNTMEEEGILQ 618
Query: 126 NSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVV 185
L++MY G+MD A ++ Q +D+I N +VS V SG + A LFD M +RN
Sbjct: 619 VVLVDMYAKCGSMDYAWKVYDQTIKKDVILNNVMVSAFVNSGRANDAKNLFDQMEQRNTA 678
Query: 186 SWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYT 245
WN +++GY+ G S F EM++S + TM +++ C G +H
Sbjct: 679 LWNSILAGYANKGLKKESFNHFLEMLESDIEYDVLTMVTIVNLCSSLPALEHGDQLHSLI 738
Query: 246 VRTS-LKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEG 304
++ + +++L+TAL+D+YSKC + A+ VFD+M +N+V WNAMI G+ HG +E
Sbjct: 739 IKKGFVNCSVVLETALVDMYSKCGAITKARTVFDNMNGKNIVSWNAMISGYSKHGCSKEA 798
Query: 305 IKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHY 364
+ L+ + + P+E+TF+ ++ AC L+ EG + F M + Y I+ HY
Sbjct: 799 LILYEEM-----PKKGMYPNEVTFLAILSACSHTGLVEEGLRIFTSMQEDYNIEAKAEHY 853
Query: 365 WCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSF 424
CM +L A E+A+E + KMP + E W +LL CR + M A+
Sbjct: 854 TCMVDLLGRAGRLEDAKEFVEKMP-----IEPEVSTWGALLGACRVHKDMDMGRLAAQRL 908
Query: 425 VDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLKEVVEKLKVG 484
++DPQ+ Y + N+YA AG+W++V +R++MK + + + PG +++ ++ G
Sbjct: 909 FELDPQNPGPYVIMSNIYAAAGRWKEVEDIRQMMKMKGVKKDPGVSWIEINSEIQIFHAG 968
Query: 485 HFWRGGMKEEVNKMMECR-QSRSLATV 510
+E N + QS+ L +
Sbjct: 969 SKTHPKTEEIYNNLRHLTLQSKGLGYI 995
Score = 147 bits (372), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 115/422 (27%), Positives = 184/422 (43%), Gaps = 43/422 (10%)
Query: 1 MKQLLQIQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIK 60
M + Q+Q+ ++ +GL N F L+ A FG D V I NAVI
Sbjct: 191 MGGVRQLQSSVVKAGLNCN-LFVGGALVDGYARFGWMDDAVTSLDEIEGTSVVTWNAVIA 249
Query: 61 AYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDF 120
Y ++ + +M+K G P+++TF S C + G H + G
Sbjct: 250 GYVKILSWEEAWGIFDRMLKIGVCPDNFTFASALRVCGALRSRDGGKQVHSKLIACGFKG 309
Query: 121 ELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMP 180
+ V N+LI+MY + +F +M R+ ++WNSI+S + G + A
Sbjct: 310 DTFVGNALIDMYAKCDDEESCLKVFDEMGERNQVTWNSIISAEAQFGHFNDA-------- 361
Query: 181 ERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRS 240
L LF M +SG++ N + S+L A A +GR
Sbjct: 362 -----------------------LVLFLRMQESGYKSNRFNLGSILMASAGLADIGKGRE 398
Query: 241 VHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGK 300
+HG+ VR L +IIL +AL+D+YSKC VE A +VF S+ +RN V +NA++ G+ GK
Sbjct: 399 LHGHLVRNLLNSDIILGSALVDMYSKCGMVEEAHQVFRSLLERNEVSYNALLAGYVQEGK 458
Query: 301 PEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPN 360
EE ++L+ + + I PD+ TF ++ C +GR+ +I I N
Sbjct: 459 AEEALELYHDM----QSEDGIQPDQFTFTTLLTLCANQRNDNQGRQIHAHLIR-ANITKN 513
Query: 361 FAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERL 420
+ ++Y+ A+EI +M E N + W S++ + G RL
Sbjct: 514 IIVETELVHMYSECGRLNYAKEIFNRMAERN------AYSWNSMIEGYQQNGETQEALRL 567
Query: 421 AK 422
K
Sbjct: 568 FK 569
Score = 112 bits (279), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 107/515 (20%), Positives = 205/515 (39%), Gaps = 120/515 (23%)
Query: 43 VFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQM-IKNGFMPNSYTFVSLFGSCAKTG 101
VF+ + NA++ Y ++ + Y M ++G P+ +TF +L CA
Sbjct: 434 VFRSLLERNEVSYNALLAGYVQEGKAEEALELYHDMQSEDGIQPDQFTFTTLLTLCANQR 493
Query: 102 CVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVS 161
+G H ++ + + V L++MY G ++ A+ +F +M+ R+ SWNS++
Sbjct: 494 NDNQGRQIHAHLIRANITKNIIVETELVHMYSECGRLNYAKEIFNRMAERNAYSWNSMIE 553
Query: 162 GHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKT 221
G+ ++G+ A L+LF++M +G + + +
Sbjct: 554 GYQQNGETQEA-------------------------------LRLFKQMQLNGIKPDCFS 582
Query: 222 MASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMA 281
++S+L++C + +GR +H + VR +++ IL L+D+Y+KC ++ A +V+D
Sbjct: 583 LSSMLSSCVSLSDSQKGRELHNFIVRNTMEEEGILQVVLVDMYAKCGSMDYAWKVYDQTI 642
Query: 282 DRNLVCWNAMILGHCIHGKPEEGIKLF-------TALVNGTVAG---------------- 318
++++ N M+ G+ + LF TAL N +AG
Sbjct: 643 KKDVILNNVMVSAFVNSGRANDAKNLFDQMEQRNTALWNSILAGYANKGLKKESFNHFLE 702
Query: 319 ---GSISPDEITFIGVICACVRAELLTEG--------RKYF--------RQMIDFYKI-- 357
I D +T + ++ C L G +K F ++D Y
Sbjct: 703 MLESDIEYDVLTMVTIVNLCSSLPALEHGDQLHSLIIKKGFVNCSVVLETALVDMYSKCG 762
Query: 358 -------------KPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSL 404
N + M + Y+ ++EA + +MP+ M + ++++
Sbjct: 763 AITKARTVFDNMNGKNIVSWNAMISGYSKHGCSKEALILYEEMPK--KGMYPNEVTFLAI 820
Query: 405 LSLCRFQGAVAMVERLAKSFVDMDPQDFS------RYQFLLNVYAVAGQWEDVARVRELM 458
LS C G +VE + F M +D++ Y ++++ AG+ ED E M
Sbjct: 821 LSACSHTG---LVEEGLRIFTSMQ-EDYNIEAKAEHYTCMVDLLGRAGRLEDAKEFVEKM 876
Query: 459 -------------------KKRRMGRMPGCRLVDL 474
K MGR+ RL +L
Sbjct: 877 PIEPEVSTWGALLGACRVHKDMDMGRLAAQRLFEL 911
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 78/342 (22%), Positives = 137/342 (40%), Gaps = 44/342 (12%)
Query: 86 NSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMF 145
N + SL C + +RG H + NG + + +M ++ +Y G +D
Sbjct: 70 NPLPYSSLIQDCIDSNSFQRGKSIHTQMISNGYNPDAYLMTKILMLYARSGCLD------ 123
Query: 146 VQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLK 205
D+ A +LF+ MPERN+ +WN MI Y++ + L+
Sbjct: 124 ----------------------DLCYARKLFEEMPERNLTAWNTMILAYARVDDYMEVLR 161
Query: 206 LFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYS 265
L+ M SG + T SV+ AC R + V+ L N+ + AL+D Y+
Sbjct: 162 LYGRMRGSGNFSDKFTFPSVIKACIAMEDMGGVRQLQSSVVKAGLNCNLFVGGALVDGYA 221
Query: 266 KCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDE 325
+ ++ A D + ++V WNA+I G+ EE +F ++ V PD
Sbjct: 222 RFGWMDDAVTSLDEIEGTSVVTWNAVIAGYVKILSWEEAWGIFDRMLKIGVC-----PDN 276
Query: 326 ITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILR 385
TF + C G++ ++I F + ++YA + E ++
Sbjct: 277 FTFASALRVCGALRSRDGGKQVHSKLIACGFKGDTFVGN-ALIDMYAKCDDEESCLKVFD 335
Query: 386 KMPEDNDNMSFESIMWVSLLS----LCRFQGAVAMVERLAKS 423
+M E N + W S++S F A+ + R+ +S
Sbjct: 336 EMGERN------QVTWNSIISAEAQFGHFNDALVLFLRMQES 371
>gi|108706388|gb|ABF94183.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
Length = 823
Score = 250 bits (639), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 146/463 (31%), Positives = 239/463 (51%), Gaps = 51/463 (11%)
Query: 35 GSPDYTVLVFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNG----FMPNSYTF 90
G+ + LVF I P F N +I+ +++ P V Y +M++ G P+ TF
Sbjct: 26 GAIAHAYLVFDQIPRPDRFMYNTLIRGAAHTAAPRDAVSLYTRMLRRGGGGGVRPDKLTF 85
Query: 91 VSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMY------------------ 132
+ +C G + G H +K G + + V N+LI M+
Sbjct: 86 PFVLRACTAMGAGDTGVQVHAHVVKAGCESDAFVKNALIGMHASCGNLGIAAALFDGRAR 145
Query: 133 -----------GCF--GAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIM 179
GC G + AR++F + +DL+SWN +++ + + GDM+ A ELFD +
Sbjct: 146 EDAVAWSAMITGCARRGDIGAARDLFDECPVKDLVSWNVMITAYAKRGDMALARELFDQV 205
Query: 180 PERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGR 239
PER+VVSWN+MISGY + G+ +L+LF +M + G + + TM S+L+AC S + G+
Sbjct: 206 PERDVVSWNVMISGYVRCGSHLHALELFEQMQRMGEKPDIVTMLSLLSACADSGDLDVGQ 265
Query: 240 SVHGYTVRTSLKPN---IILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHC 296
+H ++ N ++L ALID+Y+KC ++ A VF SM D+++ WN+++ G
Sbjct: 266 RLHS-SLSDMFSRNGFPVVLGNALIDMYAKCGSMKSAHEVFWSMRDKDVSTWNSIVGGLA 324
Query: 297 IHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYK 356
+HG E I +F ++ G V PDEITF+ V+ AC ++ +GR++F M Y+
Sbjct: 325 LHGHVLESIDMFEKMLKGKV-----RPDEITFVAVLIACSHGGMVDKGREFFNLMQHKYR 379
Query: 357 IKPNFAHYWCMANLYAGAELTEEAEEILRKMP-EDNDNMSFESIMWVSLLSLCRFQGAVA 415
++PN HY CM ++ A L +EA E + M E N S++W +LLS CR G +
Sbjct: 380 VEPNIKHYGCMVDMLGRAGLLKEAFEFIDTMKCEPN------SVIWRTLLSACRVHGEIE 433
Query: 416 MVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELM 458
+ + + + + Y L N+YA G+W ++R+LM
Sbjct: 434 LAKHANRQLLKARNDESGDYVLLSNIYASVGEWFGSEKMRKLM 476
>gi|449445234|ref|XP_004140378.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g08305-like [Cucumis sativus]
Length = 542
Score = 250 bits (639), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 157/505 (31%), Positives = 268/505 (53%), Gaps = 21/505 (4%)
Query: 1 MKQLLQIQAHLITSGLFFNNSFWTINLLKHSADFGSP----DYTVLVFKCINNPGTFCVN 56
M +L +I A L T G+ + + + LL SA SP DY+ + + NP TF N
Sbjct: 26 MFELKRIHALLFTLGISQDETIKS-KLLLFSA--LSPARDLDYSYKLILNVPNPTTFNWN 82
Query: 57 AVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKN 116
+I+A+SN+ P+ + +++M++NG P+ T+ L + +K E G H +K+
Sbjct: 83 TLIRAFSNTKNPNPSITVFIKMLQNGVSPDYLTYPFLVKATSKLLNQELGMAVHVHIVKS 142
Query: 117 GVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELF 176
G + + + NSLI+MY + AR +F +M ++L++WN+++ G+ + GD++ A E+F
Sbjct: 143 GHEIDKFIQNSLIHMYASCRDIASARKVFDEMPRKNLVTWNAMLDGYAKCGDLNMAREVF 202
Query: 177 DIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFN 236
++MPE++VVSW+ +I GY K G ++ LF M G N+ T+ S L AC
Sbjct: 203 NLMPEKDVVSWSSLIDGYVKGRVYGEAMALFERMSFDGPMANEVTLVSALCACAHLGALE 262
Query: 237 EGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFD--SMADRNLVCWNAMILG 294
GR +H Y V L I+L T+L+D+Y+KC + A VF S+ + +++ WNA+I G
Sbjct: 263 HGRMMHRYIVENELPLTIVLQTSLVDMYAKCGAIHEALTVFRACSLQEADVLIWNAIIGG 322
Query: 295 HCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDF 354
HG +E + LF + + G I PDEIT++ ++ C L+ E YF +
Sbjct: 323 LATHGLIKEAMNLFCEM---KMVG--IVPDEITYLCLLSCCAHGGLVEEAW-YFFDCLRK 376
Query: 355 YKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAV 414
+ + P HY CM + + A EA + L +MP + S M +LLS C G +
Sbjct: 377 HGMIPKVEHYACMVDALSRAGQVSEAYQFLCQMP-----VQPTSSMLGALLSGCMKHGKL 431
Query: 415 AMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDL 474
+ + + + V++DP RY L N+YA +W+D +RE M+++ + + PG +++
Sbjct: 432 DIAKVVGRRLVELDPNHDGRYVGLSNIYAADKRWDDAKNIREAMERKGVKKSPGFSFIEV 491
Query: 475 KEVVEKLKVGHFWRGGMKEEVNKMM 499
V+ + + H G E++ M+
Sbjct: 492 YGVLHRF-MAHDKTHGDCEQIFMML 515
>gi|45935146|gb|AAS79604.1| putative pentatricopeptide repeat-containing protein [Ipomoea
trifida]
gi|118562903|dbj|BAF37793.1| hypothetical protein [Ipomoea trifida]
Length = 575
Score = 250 bits (638), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 148/498 (29%), Positives = 249/498 (50%), Gaps = 59/498 (11%)
Query: 1 MKQLLQIQAHLITSGLFFNN------SFWTINLLKHSADFGSPDYTVLVFKCINNPGTFC 54
M Q +Q+ A ++ SG + +N +T + L S D +Y + + ++ P +F
Sbjct: 6 MTQAMQLHARILKSGAYDSNHGQDFHKLFTFSALSPSGDL---NYARHILRTLHTPNSFY 62
Query: 55 VNAVIKAYSNSCVPDQGVVFYLQMIKNGFM------PNSYTFVSLFGSCAKTGCVERGGM 108
N +I+AYS+S P + +L M P+ +T+ + +C+K+G G
Sbjct: 63 YNTMIRAYSDSTDPTRAFTLFLYMQNPDDASVAVPRPDHFTYPFVLKACSKSGHARFGKQ 122
Query: 109 CHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGD 168
HGL K+GV + + N+LI++Y SG+
Sbjct: 123 IHGLVFKSGVGSDRYINNALIHLYSV-------------------------------SGE 151
Query: 169 MSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTA 228
+ A+++FD MP+R+VVSW +I G+ + P +++LF M+++G N+ T+ASVL A
Sbjct: 152 PNLAYKVFDKMPDRDVVSWTSIIDGFVDNDRPIEAIRLFTHMIENGIEPNEVTVASVLRA 211
Query: 229 CGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCW 288
C + N G +H + + N + TALID+Y+KC ++ A VFD ++++ W
Sbjct: 212 CADTGALNTGERIHSFVKEKNFSSNANVSTALIDMYAKCGCIDGALEVFDETLEKDVYVW 271
Query: 289 NAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYF 348
A+I G HG + I+ F + V DE V+ A A L++EG +F
Sbjct: 272 TAIIAGLASHGLCMKAIEFFENMKKSDV-----KMDERAITAVLSAYRNAGLVSEGLLFF 326
Query: 349 RQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLC 408
R++ +KIKP HY C+ ++ A ++AEE +RKMP + D +++W +L+ C
Sbjct: 327 RRLKK-HKIKPTIQHYGCVVDMLTRAGRLKDAEEFIRKMPIEPD-----AVLWRTLIWGC 380
Query: 409 RFQGAVAMVERLAK--SFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRM 466
+ G V ERL + ++MD +D Y L NVYA G+WE+ A+ RELM +R + +
Sbjct: 381 KILGDVERSERLVRELELLNMDSRDTGSYVLLENVYAATGKWEEKAKTRELMYQRGLMKP 440
Query: 467 PGCRLVDLKEVVEKLKVG 484
P C +++ VV + G
Sbjct: 441 PACSRIEIDGVVHEFTAG 458
>gi|449455978|ref|XP_004145727.1| PREDICTED: uncharacterized protein LOC101212001 [Cucumis sativus]
Length = 2598
Score = 250 bits (638), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 134/379 (35%), Positives = 208/379 (54%), Gaps = 6/379 (1%)
Query: 2 KQLLQIQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKA 61
K L QI A +I SGL N+ T L+ + G Y +L+F I NP TF N +I+A
Sbjct: 41 KHLRQIHAKIIRSGLS-NDQLLTRKLIHLYSTHGRIAYAILLFYQIQNPCTFTWNLIIRA 99
Query: 62 YSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFE 121
+ + + +Q ++ Y M+ G + +TF + +C ++ G + HG +K G +
Sbjct: 100 NTINGLSEQALMLYKNMVCQGIAADKFTFPFVIKACTNFLSIDLGKVVHGSLIKYGFSGD 159
Query: 122 LPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPE 181
+ V N+LI+ Y G A +F +M R+++SW +++SG + GD+ A +FD +P
Sbjct: 160 VFVQNNLIDFYFKCGHTRFALKVFEKMRVRNVVSWTTVISGLISCGDLQEARRIFDEIPS 219
Query: 182 RNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSV 241
+NVVSW MI+GY ++ P +L+LF+ M N+ TM S++ AC GR +
Sbjct: 220 KNVVSWTAMINGYIRNQQPEEALELFKRMQAENIFPNEYTMVSLIKACTEMGILTLGRGI 279
Query: 242 HGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKP 301
H Y ++ ++ + L TALID+YSKC ++ A VF++M ++L WN+MI +HG
Sbjct: 280 HDYAIKNCIEIGVYLGTALIDMYSKCGSIKDAIEVFETMPRKSLPTWNSMITSLGVHGLG 339
Query: 302 EEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNF 361
+E + LF+ + V PD ITFIGV+CACV + + EG YF +M Y I P
Sbjct: 340 QEALNLFSEMERVNV-----KPDAITFIGVLCACVHIKNVKEGCAYFTRMTQHYGIAPIP 394
Query: 362 AHYWCMANLYAGAELTEEA 380
HY CM LYA + +EA
Sbjct: 395 EHYECMTELYARSNNLDEA 413
Score = 224 bits (571), Expect = 8e-56, Method: Compositional matrix adjust.
Identities = 127/400 (31%), Positives = 208/400 (52%), Gaps = 42/400 (10%)
Query: 86 NSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMF 145
+S VS+ +C++ HG +K G D + V N+L++ Y
Sbjct: 2123 DSVVMVSVLSACSRVSGKGITEGVHGFVVKKGFDGSIGVGNTLMDAYA------------ 2170
Query: 146 VQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLK 205
+ G + ++FD M E++ +SWN MI+ Y++SG G +L+
Sbjct: 2171 -------------------KCGQPLVSKKVFDWMEEKDDISWNSMIAVYAQSGLSGEALE 2211
Query: 206 LFREMMKS-GFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLY 264
+F M++ G R N T+++VL AC + G+ +H ++ L+ N+ + T++ID+Y
Sbjct: 2212 VFHGMVRHVGVRYNAVTLSAVLLACAHAGALRAGKCIHDQVIKMDLEYNVCVGTSIIDMY 2271
Query: 265 SKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPD 324
KC +VE+A++ FD M ++N+ W AM+ G+ +HG+ +E + +F +V V P+
Sbjct: 2272 CKCGRVEMAKKTFDRMKEKNVKSWTAMVAGYGMHGRAKEALDIFYKMVRAGV-----KPN 2326
Query: 325 EITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEIL 384
ITF+ V+ AC A L+ EG +F M Y I+P HY CM +L+ A EA ++
Sbjct: 2327 YITFVSVLAACSHAGLVEEGWHWFNAMKHKYDIEPGIEHYGCMVDLFGRAGCLNEAYNLI 2386
Query: 385 RKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAV 444
++M M + ++W SLL CR V + E A+ ++DP + Y L N+YA
Sbjct: 2387 KRM-----KMKPDFVVWGSLLGACRIHKNVDLGEIAAQKLFELDPDNCGYYVLLSNLYAD 2441
Query: 445 AGQWEDVARVRELMKKRRMGRMPGCRLVDLKEVVEKLKVG 484
AG+W DV R+R LMK R++ + PG LV+LK V VG
Sbjct: 2442 AGRWADVERMRMLMKNRQLVKPPGFSLVELKGRVHVFLVG 2481
Score = 84.3 bits (207), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 56/224 (25%), Positives = 103/224 (45%), Gaps = 23/224 (10%)
Query: 128 LINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSG--HVRSGDMSAAHELFDIMPERNVV 185
++N Y CF D I++NSI+ G R + A + + + NV
Sbjct: 1938 VVNFYECF----------------DGITYNSILFGVPSGREDHSNLATWFYKYVDKSNVH 1981
Query: 186 SWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYT 245
SWN +I+ ++ G+ +L+ F + K G + + +C GR H
Sbjct: 1982 SWNSVIADLARGGDSVEALRAFSSLRKLGLIPTRSSFPCTIKSCSALCDLVSGRMSHQQA 2041
Query: 246 VRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGI 305
+ ++ + +ALID+YSKC +++ A+ +FD + RN+V W +MI G+ + + + +
Sbjct: 2042 FVFGFETDLFVSSALIDMYSKCGQLKDARALFDEIPLRNVVSWTSMITGYVQNEQADNAL 2101
Query: 306 KLFTALVNGTVA---GGSISPDEITFIGVICACVR--AELLTEG 344
LF + G ++ D + + V+ AC R + +TEG
Sbjct: 2102 LLFKDFLEEETEVEDGNNVPLDSVVMVSVLSACSRVSGKGITEG 2145
Score = 72.0 bits (175), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 62/282 (21%), Positives = 120/282 (42%), Gaps = 36/282 (12%)
Query: 27 LLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKN-GFMP 85
L+ A G P + VF + N++I Y+ S + + + + M+++ G
Sbjct: 2165 LMDAYAKCGQPLVSKKVFDWMEEKDDISWNSMIAVYAQSGLSGEALEVFHGMVRHVGVRY 2224
Query: 86 NSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMF 145
N+ T ++ +CA G + G H +K +++ + V S+I+MY G ++ A+ F
Sbjct: 2225 NAVTLSAVLLACAHAGALRAGKCIHDQVIKMDLEYNVCVGTSIIDMYCKCGRVEMAKKTF 2284
Query: 146 VQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLK 205
+M +++ SW + M++GY G +L
Sbjct: 2285 DRMKEKNVKSWTA-------------------------------MVAGYGMHGRAKEALD 2313
Query: 206 LFREMMKSGFRGNDKTMASVLTACGRSARFNEG-RSVHGYTVRTSLKPNIILDTALIDLY 264
+F +M+++G + N T SVL AC + EG + + ++P I ++DL+
Sbjct: 2314 IFYKMVRAGVKPNYITFVSVLAACSHAGLVEEGWHWFNAMKHKYDIEPGIEHYGCMVDLF 2373
Query: 265 SKCQKVEVAQRVFDSMADR-NLVCWNAMILGHC-IHGKPEEG 304
+ + A + M + + V W ++ LG C IH + G
Sbjct: 2374 GRAGCLNEAYNLIKRMKMKPDFVVWGSL-LGACRIHKNVDLG 2414
Score = 46.6 bits (109), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 48/102 (47%), Gaps = 5/102 (4%)
Query: 235 FNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILG 294
F R +H +R+ L + +L LI LYS ++ A +F + + WN +I
Sbjct: 40 FKHLRQIHAKIIRSGLSNDQLLTRKLIHLYSTHGRIAYAILLFYQIQNPCTFTWNLIIRA 99
Query: 295 HCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACV 336
+ I+G E+ + L+ +V +A D+ TF VI AC
Sbjct: 100 NTINGLSEQALMLYKNMVCQGIAA-----DKFTFPFVIKACT 136
>gi|414886077|tpg|DAA62091.1| TPA: methyltransferase small domain protein [Zea mays]
Length = 656
Score = 250 bits (638), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 141/397 (35%), Positives = 213/397 (53%), Gaps = 13/397 (3%)
Query: 75 YLQMIKN-GFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYG 133
Y+QM+ G V L +CA+ V G H + LKNG D V +L++ YG
Sbjct: 264 YVQMVGEVGANDYEVLLVDLMKACARYSAVTEGQQLHTVILKNGFDAHAFVQATLVHFYG 323
Query: 134 CFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISG 193
C G + A+ F SWN++++ +R+G + A ELFD MPER+ VSW+ MISG
Sbjct: 324 CCGLIGLAQMTFRLSDKSHTASWNALLAALLRNGLIREARELFDDMPERDTVSWSTMISG 383
Query: 194 YSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPN 253
Y ++G +LKLF M+ + N+ T+AS L+A S ++G+ +H Y + ++
Sbjct: 384 YVQTGRSDMALKLFYSMLNTSIEPNEVTLASALSAIADSGTLDQGKWIHDYIMNRPVQLT 443
Query: 254 IILDTALIDLYSKCQKVEVAQRVFDSMADR--NLVCWNAMILGHCIHGKPEEGIKLFTAL 311
L + LID+Y+KC + A + F+ + D+ ++ WNAMI IHG + LF+ L
Sbjct: 444 DNLSSGLIDMYAKCGSIADAVQFFNRVNDKFSSVSPWNAMICSLAIHGYAHMSLDLFSQL 503
Query: 312 VNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLY 371
SI P+ ITFIGV+ AC A +T+G+ YF M Y I+P HY CM +L
Sbjct: 504 QR-----TSIKPNSITFIGVLSACCHAGTVTKGKYYFESMTREYGIQPTIKHYGCMVDLL 558
Query: 372 AGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQD 431
A EEAE+++ MP M + ++W S+LS R QG VA+ ER A+ +D
Sbjct: 559 GRAGYLEEAEQLVSMMP-----MKPDVVIWGSILSASRAQGNVALGERAAEELAKLDQTH 613
Query: 432 FSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPG 468
+ L N+YA AG W +V+ VR+ ++ + R+ G
Sbjct: 614 GASKIALSNIYADAGHWINVSVVRKELQDANLERLTG 650
Score = 120 bits (301), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 74/320 (23%), Positives = 147/320 (45%), Gaps = 37/320 (11%)
Query: 58 VIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNG 117
++ +++ + + V + M+ +PN T + A+ G GM HG AL+
Sbjct: 115 LVTSFARAGHAARAVAVFRSMLSENVVPNEATLAGAITAFARCGAPATVGMIHGFALQRA 174
Query: 118 VDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFD 177
+D + V +L++ Y + AR +F M+ R+ ++WN +++G+V++ + A E+F
Sbjct: 175 LDGFVIVATNLVHAYAGVLELCSARALFDGMTYRNTVTWNVMLNGYVKAKMIDMAAEVFW 234
Query: 178 IMPERNVVSWNIMISGYSKSGNPGCSLKLFREMM-KSGFRGNDKTMASVLTACGRSARFN 236
+PER+ VSW +I GY + ++K + +M+ + G + + ++ AC R +
Sbjct: 235 RIPERDEVSWLTLIDGYICADLISDAMKAYVQMVGEVGANDYEVLLVDLMKACARYSAVT 294
Query: 237 EGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQ---------------------- 274
EG+ +H ++ + + L+ Y C + +AQ
Sbjct: 295 EGQQLHTVILKNGFDAHAFVQATLVHFYGCCGLIGLAQMTFRLSDKSHTASWNALLAALL 354
Query: 275 ---------RVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDE 325
+FD M +R+ V W+ MI G+ G+ + +KLF +++N SI P+E
Sbjct: 355 RNGLIREARELFDDMPERDTVSWSTMISGYVQTGRSDMALKLFYSMLN-----TSIEPNE 409
Query: 326 ITFIGVICACVRAELLTEGR 345
+T + A + L +G+
Sbjct: 410 VTLASALSAIADSGTLDQGK 429
Score = 95.5 bits (236), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 65/266 (24%), Positives = 132/266 (49%), Gaps = 15/266 (5%)
Query: 93 LFGSCAKTGCVERGGMCHGLALKNGV-DFELPVMNSLINMYGCF-GAMDCARNMFVQMSP 150
L S + + G H LA K+G+ + V NS+++ Y ++ A +F + P
Sbjct: 12 LVASLKRAARLRCGEQLHALAAKSGLLASNVFVRNSVLSSYSRLPSSLASALQLFDETPP 71
Query: 151 --RDLISWNSIVSGHVRSGDMSAAHELFDIMP--ERNVVSWNIMISGYSKSGNPGCSLKL 206
RD + NS+++ R+G + A L + MP R+ VS+ +++ ++++G+ ++ +
Sbjct: 72 PLRDATARNSVLAALTRAGYLDRAQGLLEEMPRIHRDAVSYTTLVTSFARAGHAARAVAV 131
Query: 207 FREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSK 266
FR M+ N+ T+A +TA R +HG+ ++ +L +I+ T L+ Y+
Sbjct: 132 FRSMLSENVVPNEATLAGAITAFARCGAPATVGMIHGFALQRALDGFVIVATNLVHAYAG 191
Query: 267 CQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEI 326
++ A+ +FD M RN V WN M+ G+ + ++F + DE+
Sbjct: 192 VLELCSARALFDGMTYRNTVTWNVMLNGYVKAKMIDMAAEVFWRIPE---------RDEV 242
Query: 327 TFIGVICACVRAELLTEGRKYFRQMI 352
+++ +I + A+L+++ K + QM+
Sbjct: 243 SWLTLIDGYICADLISDAMKAYVQMV 268
Score = 38.5 bits (88), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 25/108 (23%), Positives = 50/108 (46%), Gaps = 6/108 (5%)
Query: 74 FYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMC-HGLALKNGVDFELPVMNSLINMY 132
+ Q+ + PNS TF+ + +C G V +G + + G+ + ++++
Sbjct: 499 LFSQLQRTSIKPNSITFIGVLSACCHAGTVTKGKYYFESMTREYGIQPTIKHYGCMVDLL 558
Query: 133 GCFGAMDCARNMFVQMSPR-DLISWNSIVSGHVRSGDMS----AAHEL 175
G G ++ A + M + D++ W SI+S G+++ AA EL
Sbjct: 559 GRAGYLEEAEQLVSMMPMKPDVVIWGSILSASRAQGNVALGERAAEEL 606
>gi|147825156|emb|CAN75501.1| hypothetical protein VITISV_034156 [Vitis vinifera]
Length = 532
Score = 250 bits (638), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 153/478 (32%), Positives = 253/478 (52%), Gaps = 16/478 (3%)
Query: 1 MKQLLQIQAHLITSGLFFNNSFWTINLLKHSA--DFGSPDYTVLVFKCINNPGTFCVNAV 58
M + QIQA ITSGL ++ F + LL SA +G D++ +F I +P N++
Sbjct: 18 MSEFKQIQAFFITSGLSQHHPFAS-RLLSFSAISSWGDIDHSYRIFLQIPSPTISNWNSI 76
Query: 59 IKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGV 118
I+ +S P+ V +++M++ G P+ T+ + + A+ + H K G+
Sbjct: 77 IRGFSKGKNPNPSVSVFVKMLRFGVCPDHLTYPFVAKAVARLSELRLALAVHCRIAKEGL 136
Query: 119 DFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDI 178
F+ + NSLI+MYG G + AR +F +M R+ +SWN+++ G+ + GD+ +AH++F
Sbjct: 137 WFDRFIANSLIHMYGSCGDIGSARKVFDEMLIRNSVSWNAMLDGYAKCGDLDSAHQVFXS 196
Query: 179 MPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEG 238
MP+R+VVSW+ MI G K G G +L +F M G + N TM SVL AC G
Sbjct: 197 MPDRDVVSWSSMIDGCVKGGEYGVALAIFERMRVVGPKANXVTMVSVLCACAHLGALEXG 256
Query: 239 RSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDS--MADRNLVCWNAMILGHC 296
R +H Y V +++ ++L T+L+D+Y+KC +E A VF M +++ WN +I G
Sbjct: 257 RXMHQYMVDNTMRFTLVLRTSLMDMYAKCGAIEEAIAVFRGVPMDQTDVLMWNTIIGGLA 316
Query: 297 IHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYK 356
HG E ++LF + V G I PDEIT++ + AC L+ E +F+ +
Sbjct: 317 THGLVXESLELFKEM---QVLG--IVPDEITYLCLFSACAHGGLVHEAWHFFKSLGK-QG 370
Query: 357 IKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAM 416
+ P HY CM ++ + A EA + + +MP M + M +LL+ C +
Sbjct: 371 MVPKSEHYACMVDVLSRAGQLAEAYDFIAQMP-----MEPTASMLGALLNGCMNHRRFDL 425
Query: 417 VERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDL 474
ER+ + ++++P RY L NVYA W++ +RE M++R + + PG V++
Sbjct: 426 AERVGRKLIELEPDHDGRYIGLSNVYAGVKLWDNARMMREAMERRGVKKSPGFSFVEV 483
>gi|226531155|ref|NP_001148193.1| methyltransferase small domain [Zea mays]
gi|195616632|gb|ACG30146.1| methyltransferase small domain [Zea mays]
Length = 656
Score = 250 bits (638), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 141/397 (35%), Positives = 213/397 (53%), Gaps = 13/397 (3%)
Query: 75 YLQMIKN-GFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYG 133
Y+QM+ G V L +CA+ V G H + LKNG D V +L++ YG
Sbjct: 264 YVQMVGEVGANDYEVLLVDLMKACARYSAVTEGQQLHTVILKNGFDALAFVQATLVHFYG 323
Query: 134 CFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISG 193
C G + A+ F SWN++++ +R+G + A ELFD MPER+ VSW+ MISG
Sbjct: 324 CCGLIGLAQMTFRLSDKSHTASWNALLAALLRNGLIREARELFDDMPERDTVSWSTMISG 383
Query: 194 YSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPN 253
Y ++G +LKLF M+ + N+ T+AS L+A S ++G+ +H Y + ++
Sbjct: 384 YVQTGRSDMALKLFYSMLNTSIEPNEVTLASALSAIADSGTLDQGKWIHDYIMNRPVQLT 443
Query: 254 IILDTALIDLYSKCQKVEVAQRVFDSMADR--NLVCWNAMILGHCIHGKPEEGIKLFTAL 311
L + LID+Y+KC + A + F+ + D+ ++ WNAMI IHG + LF+ L
Sbjct: 444 DNLSSGLIDMYAKCGSIADAVQFFNRVNDKFSSVSPWNAMICSLAIHGYAHMSLDLFSQL 503
Query: 312 VNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLY 371
SI P+ ITFIGV+ AC A +T+G+ YF M Y I+P HY CM +L
Sbjct: 504 QR-----TSIKPNSITFIGVLSACCHAGTVTKGKYYFESMTREYGIQPTIKHYGCMVDLL 558
Query: 372 AGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQD 431
A EEAE+++ MP M + ++W S+LS R QG VA+ ER A+ +D
Sbjct: 559 GRAGYLEEAEQLVSMMP-----MKPDVVIWGSILSASRAQGNVALGERAAEELAKLDQTH 613
Query: 432 FSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPG 468
+ L N+YA AG W +V+ VR+ ++ + R+ G
Sbjct: 614 GASKIALSNIYADAGHWTNVSVVRKELQDANLERLTG 650
Score = 120 bits (301), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 75/320 (23%), Positives = 146/320 (45%), Gaps = 37/320 (11%)
Query: 58 VIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNG 117
++ A++ + + V + M+ +PN T + A+ G GM HG AL+
Sbjct: 115 LVTAFARAGHAARAVAVFRSMLSENVVPNEATLAGAITAFARCGAPATVGMIHGFALQRA 174
Query: 118 VDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFD 177
+D + V +L++ Y + AR +F M+ R+ ++WN +++G+V++ + A E+F
Sbjct: 175 LDGFVIVATNLVHAYAGVLELCSARALFDGMTHRNTVTWNVMLNGYVKAKMIDMAAEVFW 234
Query: 178 IMPERNVVSWNIMISGYSKSGNPGCSLKLFREMM-KSGFRGNDKTMASVLTACGRSARFN 236
+PER+ VSW +I GY + ++K + +M+ + G + + ++ AC R +
Sbjct: 235 RIPERDEVSWLTLIDGYICADLISDAMKAYVQMVGEVGANDYEVLLVDLMKACARYSAVT 294
Query: 237 EGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQ---------------------- 274
EG+ +H ++ + L+ Y C + +AQ
Sbjct: 295 EGQQLHTVILKNGFDALAFVQATLVHFYGCCGLIGLAQMTFRLSDKSHTASWNALLAALL 354
Query: 275 ---------RVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDE 325
+FD M +R+ V W+ MI G+ G+ + +KLF +++N SI P+E
Sbjct: 355 RNGLIREARELFDDMPERDTVSWSTMISGYVQTGRSDMALKLFYSMLN-----TSIEPNE 409
Query: 326 ITFIGVICACVRAELLTEGR 345
+T + A + L +G+
Sbjct: 410 VTLASALSAIADSGTLDQGK 429
Score = 98.2 bits (243), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 66/266 (24%), Positives = 132/266 (49%), Gaps = 15/266 (5%)
Query: 93 LFGSCAKTGCVERGGMCHGLALKNGV-DFELPVMNSLINMYGCF-GAMDCARNMFVQMSP 150
L S + + G H LA K+G+ + V NS+++ Y ++ A +F + P
Sbjct: 12 LVASLKRAARLRCGEQLHALAAKSGLLASNVFVRNSVLSSYSRLPSSLASALQLFDETPP 71
Query: 151 --RDLISWNSIVSGHVRSGDMSAAHELFDIMP--ERNVVSWNIMISGYSKSGNPGCSLKL 206
RD + NSI++ R+G + A L + MP R+ VS+ +++ ++++G+ ++ +
Sbjct: 72 PLRDATARNSILAALTRAGHLDRAQGLLEEMPRIHRDAVSYTTLVTAFARAGHAARAVAV 131
Query: 207 FREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSK 266
FR M+ N+ T+A +TA R +HG+ ++ +L +I+ T L+ Y+
Sbjct: 132 FRSMLSENVVPNEATLAGAITAFARCGAPATVGMIHGFALQRALDGFVIVATNLVHAYAG 191
Query: 267 CQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEI 326
++ A+ +FD M RN V WN M+ G+ + ++F + DE+
Sbjct: 192 VLELCSARALFDGMTHRNTVTWNVMLNGYVKAKMIDMAAEVFWRIPE---------RDEV 242
Query: 327 TFIGVICACVRAELLTEGRKYFRQMI 352
+++ +I + A+L+++ K + QM+
Sbjct: 243 SWLTLIDGYICADLISDAMKAYVQMV 268
Score = 38.9 bits (89), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 25/108 (23%), Positives = 50/108 (46%), Gaps = 6/108 (5%)
Query: 74 FYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMC-HGLALKNGVDFELPVMNSLINMY 132
+ Q+ + PNS TF+ + +C G V +G + + G+ + ++++
Sbjct: 499 LFSQLQRTSIKPNSITFIGVLSACCHAGTVTKGKYYFESMTREYGIQPTIKHYGCMVDLL 558
Query: 133 GCFGAMDCARNMFVQMSPR-DLISWNSIVSGHVRSGDMS----AAHEL 175
G G ++ A + M + D++ W SI+S G+++ AA EL
Sbjct: 559 GRAGYLEEAEQLVSMMPMKPDVVIWGSILSASRAQGNVALGERAAEEL 606
>gi|414886078|tpg|DAA62092.1| TPA: hypothetical protein ZEAMMB73_488923 [Zea mays]
Length = 714
Score = 250 bits (638), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 141/397 (35%), Positives = 213/397 (53%), Gaps = 13/397 (3%)
Query: 75 YLQMIKN-GFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYG 133
Y+QM+ G V L +CA+ V G H + LKNG D V +L++ YG
Sbjct: 264 YVQMVGEVGANDYEVLLVDLMKACARYSAVTEGQQLHTVILKNGFDAHAFVQATLVHFYG 323
Query: 134 CFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISG 193
C G + A+ F SWN++++ +R+G + A ELFD MPER+ VSW+ MISG
Sbjct: 324 CCGLIGLAQMTFRLSDKSHTASWNALLAALLRNGLIREARELFDDMPERDTVSWSTMISG 383
Query: 194 YSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPN 253
Y ++G +LKLF M+ + N+ T+AS L+A S ++G+ +H Y + ++
Sbjct: 384 YVQTGRSDMALKLFYSMLNTSIEPNEVTLASALSAIADSGTLDQGKWIHDYIMNRPVQLT 443
Query: 254 IILDTALIDLYSKCQKVEVAQRVFDSMADR--NLVCWNAMILGHCIHGKPEEGIKLFTAL 311
L + LID+Y+KC + A + F+ + D+ ++ WNAMI IHG + LF+ L
Sbjct: 444 DNLSSGLIDMYAKCGSIADAVQFFNRVNDKFSSVSPWNAMICSLAIHGYAHMSLDLFSQL 503
Query: 312 VNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLY 371
SI P+ ITFIGV+ AC A +T+G+ YF M Y I+P HY CM +L
Sbjct: 504 QR-----TSIKPNSITFIGVLSACCHAGTVTKGKYYFESMTREYGIQPTIKHYGCMVDLL 558
Query: 372 AGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQD 431
A EEAE+++ MP M + ++W S+LS R QG VA+ ER A+ +D
Sbjct: 559 GRAGYLEEAEQLVSMMP-----MKPDVVIWGSILSASRAQGNVALGERAAEELAKLDQTH 613
Query: 432 FSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPG 468
+ L N+YA AG W +V+ VR+ ++ + R+ G
Sbjct: 614 GASKIALSNIYADAGHWINVSVVRKELQDANLERLTG 650
Score = 120 bits (302), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 74/320 (23%), Positives = 147/320 (45%), Gaps = 37/320 (11%)
Query: 58 VIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNG 117
++ +++ + + V + M+ +PN T + A+ G GM HG AL+
Sbjct: 115 LVTSFARAGHAARAVAVFRSMLSENVVPNEATLAGAITAFARCGAPATVGMIHGFALQRA 174
Query: 118 VDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFD 177
+D + V +L++ Y + AR +F M+ R+ ++WN +++G+V++ + A E+F
Sbjct: 175 LDGFVIVATNLVHAYAGVLELCSARALFDGMTYRNTVTWNVMLNGYVKAKMIDMAAEVFW 234
Query: 178 IMPERNVVSWNIMISGYSKSGNPGCSLKLFREMM-KSGFRGNDKTMASVLTACGRSARFN 236
+PER+ VSW +I GY + ++K + +M+ + G + + ++ AC R +
Sbjct: 235 RIPERDEVSWLTLIDGYICADLISDAMKAYVQMVGEVGANDYEVLLVDLMKACARYSAVT 294
Query: 237 EGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQ---------------------- 274
EG+ +H ++ + + L+ Y C + +AQ
Sbjct: 295 EGQQLHTVILKNGFDAHAFVQATLVHFYGCCGLIGLAQMTFRLSDKSHTASWNALLAALL 354
Query: 275 ---------RVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDE 325
+FD M +R+ V W+ MI G+ G+ + +KLF +++N SI P+E
Sbjct: 355 RNGLIREARELFDDMPERDTVSWSTMISGYVQTGRSDMALKLFYSMLN-----TSIEPNE 409
Query: 326 ITFIGVICACVRAELLTEGR 345
+T + A + L +G+
Sbjct: 410 VTLASALSAIADSGTLDQGK 429
Score = 95.9 bits (237), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 65/266 (24%), Positives = 132/266 (49%), Gaps = 15/266 (5%)
Query: 93 LFGSCAKTGCVERGGMCHGLALKNGV-DFELPVMNSLINMYGCF-GAMDCARNMFVQMSP 150
L S + + G H LA K+G+ + V NS+++ Y ++ A +F + P
Sbjct: 12 LVASLKRAARLRCGEQLHALAAKSGLLASNVFVRNSVLSSYSRLPSSLASALQLFDETPP 71
Query: 151 --RDLISWNSIVSGHVRSGDMSAAHELFDIMP--ERNVVSWNIMISGYSKSGNPGCSLKL 206
RD + NS+++ R+G + A L + MP R+ VS+ +++ ++++G+ ++ +
Sbjct: 72 PLRDATARNSVLAALTRAGYLDRAQGLLEEMPRIHRDAVSYTTLVTSFARAGHAARAVAV 131
Query: 207 FREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSK 266
FR M+ N+ T+A +TA R +HG+ ++ +L +I+ T L+ Y+
Sbjct: 132 FRSMLSENVVPNEATLAGAITAFARCGAPATVGMIHGFALQRALDGFVIVATNLVHAYAG 191
Query: 267 CQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEI 326
++ A+ +FD M RN V WN M+ G+ + ++F + DE+
Sbjct: 192 VLELCSARALFDGMTYRNTVTWNVMLNGYVKAKMIDMAAEVFWRIPE---------RDEV 242
Query: 327 TFIGVICACVRAELLTEGRKYFRQMI 352
+++ +I + A+L+++ K + QM+
Sbjct: 243 SWLTLIDGYICADLISDAMKAYVQMV 268
Score = 38.5 bits (88), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 25/108 (23%), Positives = 50/108 (46%), Gaps = 6/108 (5%)
Query: 74 FYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMC-HGLALKNGVDFELPVMNSLINMY 132
+ Q+ + PNS TF+ + +C G V +G + + G+ + ++++
Sbjct: 499 LFSQLQRTSIKPNSITFIGVLSACCHAGTVTKGKYYFESMTREYGIQPTIKHYGCMVDLL 558
Query: 133 GCFGAMDCARNMFVQMSPR-DLISWNSIVSGHVRSGDMS----AAHEL 175
G G ++ A + M + D++ W SI+S G+++ AA EL
Sbjct: 559 GRAGYLEEAEQLVSMMPMKPDVVIWGSILSASRAQGNVALGERAAEEL 606
>gi|224094065|ref|XP_002310070.1| predicted protein [Populus trichocarpa]
gi|222852973|gb|EEE90520.1| predicted protein [Populus trichocarpa]
Length = 438
Score = 250 bits (638), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 142/399 (35%), Positives = 227/399 (56%), Gaps = 13/399 (3%)
Query: 78 MIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGA 137
M++ G P+ T+ L + ++ E G HG +K+G + + V NSLI+MYG G
Sbjct: 1 MLQVGIYPDHLTYPFLAKATSRLLRKELGVSIHGHVIKSGFEIDRFVANSLIHMYGSCGD 60
Query: 138 MDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKS 197
+ AR +F ++L+SWNS+V G+ + G + A LFD+MPER+V SW+ +I GY+KS
Sbjct: 61 IVYARKVFDGTPVKNLVSWNSMVDGYAKCGYLDLARGLFDLMPERDVRSWSCLIDGYAKS 120
Query: 198 GNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILD 257
GN G ++ +F +M SG + N+ TM SVL AC ++GR +H Y V + N++L
Sbjct: 121 GNYGDAMAVFEKMRTSGPKANEVTMVSVLCACAHLGALDKGRMMHQYLVDNGFELNLVLR 180
Query: 258 TALIDLYSKCQKVEVAQRVFDSMADR--NLVCWNAMILGHCIHGKPEEGIKLFTALVNGT 315
T+LID+Y+KC VE A VF ++ R +++ WNAMI G HG +E + L+T +
Sbjct: 181 TSLIDMYAKCGAVEEAFAVFRGVSLRKSDVLIWNAMIGGLATHGLVKESLDLYTEM---Q 237
Query: 316 VAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAE 375
+AG I PDEITF+ ++ AC L+ + Y + + + P HY CM ++ A A
Sbjct: 238 IAG--IKPDEITFLCLLSACAHGGLVKQA-SYVFEGLGKNGMTPKTEHYACMVDVMARAG 294
Query: 376 LTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRY 435
EA + L +MP + + M +LLS C G + + E + K +++DP+ RY
Sbjct: 295 QVAEAYQFLCQMP-----LEPTASMLGALLSGCMNHGKLDLAELIGKKLIELDPEHDGRY 349
Query: 436 QFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDL 474
L NVYA+ +W++ +RE M++R + + PG +++
Sbjct: 350 VGLSNVYAIGRRWDEARIMREAMERRGVKKTPGYSFLEM 388
Score = 65.5 bits (158), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 57/246 (23%), Positives = 99/246 (40%), Gaps = 34/246 (13%)
Query: 58 VIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNG 117
+I Y+ S + + +M +G N T VS+ +CA G +++G M H + NG
Sbjct: 113 LIDGYAKSGNYGDAMAVFEKMRTSGPKANEVTMVSVLCACAHLGALDKGRMMHQYLVDNG 172
Query: 118 VDFELPVMNSLINMYGCFGAMDCARNMFVQMSPR--DLISWNSIVSGHVRSGDMSAAHEL 175
+ L + SLI+MY GA++ A +F +S R D++ WN+
Sbjct: 173 FELNLVLRTSLIDMYAKCGAVEEAFAVFRGVSLRKSDVLIWNA----------------- 215
Query: 176 FDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARF 235
MI G + G SL L+ EM +G + ++ T +L+AC
Sbjct: 216 --------------MIGGLATHGLVKESLDLYTEMQIAGIKPDEITFLCLLSACAHGGLV 261
Query: 236 NEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGH 295
+ V + + P ++D+ ++ +V A + M +L
Sbjct: 262 KQASYVFEGLGKNGMTPKTEHYACMVDVMARAGQVAEAYQFLCQMPLEPTASMLGALLSG 321
Query: 296 CI-HGK 300
C+ HGK
Sbjct: 322 CMNHGK 327
>gi|347954542|gb|AEP33771.1| organelle transcript processing 82, partial [Thlaspi arvense]
Length = 673
Score = 249 bits (637), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 142/435 (32%), Positives = 229/435 (52%), Gaps = 51/435 (11%)
Query: 56 NAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALK 115
NA+I Y+ + + + + +M+K P+ T V++ +CA++ VE G H
Sbjct: 167 NAMISGYAETGSYKEALELFKEMMKTNVRPDEGTMVTVLSACAQSRSVELGRQVHSWIDD 226
Query: 116 NGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHEL 175
+G L ++N+LI++Y G ++ A +F +S +D
Sbjct: 227 HGFGSNLKIVNALIDLYSKCGQVETACGLFEGLSCKD----------------------- 263
Query: 176 FDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARF 235
VVSWN +I GY+ +L LF+EM++SG ND T+ S+L AC
Sbjct: 264 --------VVSWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNDVTIVSILPACAHLGAI 315
Query: 236 NEGRSVHGYTVRTSLK-----PNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNA 290
+ GR +H Y + LK P+ L T+LID+Y+KC +E A +VF+SM ++L WNA
Sbjct: 316 DIGRWIHVY-IDKKLKDVTNAPS--LRTSLIDMYAKCGDIEAAHQVFNSMLHKSLSSWNA 372
Query: 291 MILGHCIHGKPEEGIKLFTAL-VNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFR 349
MI G +HG+ G LF+ + NG I PD+ITF+G++ AC + L GR F+
Sbjct: 373 MIFGFAMHGRANAGFDLFSRMRKNG------IEPDDITFVGLLSACSHSGKLDLGRHIFK 426
Query: 350 QMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCR 409
M Y I P HY CM +L + L +EA+E+++ MP + D ++W SLL CR
Sbjct: 427 SMTQDYDITPKLEHYGCMIDLLGHSGLFKEAKEMIKTMPMEPDG-----VIWCSLLKACR 481
Query: 410 FQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGC 469
G + + E A++ + ++P++ Y L N+YA AG+W++VA+VR L+ + M ++PGC
Sbjct: 482 RHGNLELAESFARNLMKVEPENPGSYVLLSNIYATAGEWDEVAKVRALLNGKGMKKVPGC 541
Query: 470 RLVDLKEVVEKLKVG 484
+++ V + VG
Sbjct: 542 SSIEIDSEVHEFIVG 556
Score = 217 bits (553), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 114/315 (36%), Positives = 182/315 (57%), Gaps = 5/315 (1%)
Query: 31 SADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTF 90
S F Y + VF I P N +++ Y+ S P + Y+ MI G +PNSYTF
Sbjct: 10 SPHFDGFPYAISVFATIQEPNQLIWNTMLRGYALSSDPVSALKLYVVMISLGLLPNSYTF 69
Query: 91 VSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSP 150
L SCAK+ E G HG LK G + +L V SLI+MY G ++ A +F + S
Sbjct: 70 PFLLKSCAKSKAFEEGQQIHGHVLKLGYEPDLYVHTSLISMYAQNGRLEDAHKVFDRSSH 129
Query: 151 RDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREM 210
RD++S+ ++++G+ SG++ +A E+FD +P ++VVSWN MISGY+++G+ +L+LF+EM
Sbjct: 130 RDVVSYTALITGYASSGNIRSAQEMFDEIPVKDVVSWNAMISGYAETGSYKEALELFKEM 189
Query: 211 MKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKV 270
MK+ R ++ TM +VL+AC +S GR VH + N+ + ALIDLYSKC +V
Sbjct: 190 MKTNVRPDEGTMVTVLSACAQSRSVELGRQVHSWIDDHGFGSNLKIVNALIDLYSKCGQV 249
Query: 271 EVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIG 330
E A +F+ ++ +++V WN +I G+ +E + LF ++ SP+++T +
Sbjct: 250 ETACGLFEGLSCKDVVSWNTLIGGYTHMNLYKEALLLFQEMLR-----SGESPNDVTIVS 304
Query: 331 VICACVRAELLTEGR 345
++ AC + GR
Sbjct: 305 ILPACAHLGAIDIGR 319
Score = 104 bits (260), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 83/345 (24%), Positives = 147/345 (42%), Gaps = 73/345 (21%)
Query: 175 LFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSAR 234
+F + E N + WN M+ GY+ S +P +LKL+ M+ G N T +L +C +S
Sbjct: 22 VFATIQEPNQLIWNTMLRGYALSSDPVSALKLYVVMISLGLLPNSYTFPFLLKSCAKSKA 81
Query: 235 FNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILG 294
F EG+ +HG+ ++ +P++ + T+LI +Y++ ++E A +VFD + R++V + A+I G
Sbjct: 82 FEEGQQIHGHVLKLGYEPDLYVHTSLISMYAQNGRLEDAHKVFDRSSHRDVVSYTALITG 141
Query: 295 HCIHGK-----------PEEGIKLFTALVNGTVAGGS---------------ISPDEITF 328
+ G P + + + A+++G GS + PDE T
Sbjct: 142 YASSGNIRSAQEMFDEIPVKDVVSWNAMISGYAETGSYKEALELFKEMMKTNVRPDEGTM 201
Query: 329 IGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEA-------- 380
+ V+ AC ++ + GR+ ID + N + +LY+ E A
Sbjct: 202 VTVLSACAQSRSVELGRQ-VHSWIDDHGFGSNLKIVNALIDLYSKCGQVETACGLFEGLS 260
Query: 381 ---------------------------EEILRKMPEDNDNMSFESIMWVSLLSLCRFQGA 413
+E+LR ND + VS+L C GA
Sbjct: 261 CKDVVSWNTLIGGYTHMNLYKEALLLFQEMLRSGESPND------VTIVSILPACAHLGA 314
Query: 414 VAMVERLAKSFVDMDPQDF----SRYQFLLNVYAVAGQWEDVARV 454
+ + R ++D +D S L+++YA G E +V
Sbjct: 315 ID-IGRWIHVYIDKKLKDVTNAPSLRTSLIDMYAKCGDIEAAHQV 358
>gi|147805129|emb|CAN64485.1| hypothetical protein VITISV_035038 [Vitis vinifera]
Length = 1740
Score = 249 bits (637), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 154/521 (29%), Positives = 255/521 (48%), Gaps = 47/521 (9%)
Query: 1 MKQLLQIQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIK 60
+K L ++ + + +N I L++ A G P T +F I N +I+
Sbjct: 1040 IKYLKKLHSKICIDHDLHSNPSLGIKLMRAYAVCGEPWSTRHIFDEIPKKNVVFFNVMIR 1099
Query: 61 AYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDF 120
+Y N+ + ++ + M +G P+ YT+ + + + + + G H ++ G+D
Sbjct: 1100 SYVNNHLYSDALLVFKNMAGHGIDPDHYTYPCVLKASSGSEDLWVGMQIHAAVVRVGLDL 1159
Query: 121 ELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSG------------- 167
+ V N LI+MYG G + A + ZM RD++SWNS+V+G R+G
Sbjct: 1160 NVFVGNGLISMYGKCGCLVEACRVLDZMPCRDVVSWNSLVAGCARNGQFDDALEVCKEME 1219
Query: 168 ------------------------DMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCS 203
++S E+F + +++VSWN+MI+ Y + P +
Sbjct: 1220 LLGLKPDAGTMASLLPAVTNTCLDNVSFVKEMFMKLANKSLVSWNVMIAVYMNNSMPAEA 1279
Query: 204 LKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDL 263
+ +F +M + ++ASVL ACG + GR +H Y VR L+PN++L+ ALID+
Sbjct: 1280 VDIFLQMEDHAVDPDAISIASVLPACGDLSALLLGRRIHEYVVRKRLQPNLLLENALIDM 1339
Query: 264 YSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISP 323
Y+KC +E A+ VFD M R++V W +MI + ++GK + + LF+ + + ++P
Sbjct: 1340 YAKCGCLEYAREVFDQMKFRDVVSWTSMISAYGMNGKGRDAVSLFSRMQD-----LGLNP 1394
Query: 324 DEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEI 383
D I F+ V+ AC A LL EGR YF+ M + KI P H+ CM +L A +EA
Sbjct: 1395 DSIAFVSVLSACSHAGLLDEGRYYFKLMTEECKIVPRIEHFVCMVDLLGRAGQVDEAYGF 1454
Query: 384 LRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYA 443
+++MP M +W +LLS CR + + A + P+ Y L N+YA
Sbjct: 1455 IKQMP-----MEPNERVWGALLSACRVYSNMIIGLLAADQLFQLCPEQSGYYVLLSNIYA 1509
Query: 444 VAGQWEDVARVRELMKKRRMGRMPGCRLVDLKEVVEKLKVG 484
AG+WEDV VR +MK + + +MPG +L V G
Sbjct: 1510 KAGRWEDVTTVRSIMKTKGIKKMPGVSNFELDNRVHTFLAG 1550
>gi|222624265|gb|EEE58397.1| hypothetical protein OsJ_09562 [Oryza sativa Japonica Group]
Length = 523
Score = 249 bits (637), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 146/463 (31%), Positives = 239/463 (51%), Gaps = 51/463 (11%)
Query: 35 GSPDYTVLVFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFM----PNSYTF 90
G+ + LVF I P F N +I+ +++ P V Y +M++ G P+ TF
Sbjct: 26 GAIAHAYLVFDQIPRPDRFMYNTLIRGAAHTAAPRDAVSLYTRMLRRGGGGGVRPDKLTF 85
Query: 91 VSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMY------------------ 132
+ +C G + G H +K G + + V N+LI M+
Sbjct: 86 PFVLRACTAMGAGDTGVQVHAHVVKAGCESDAFVKNALIGMHASCGNLGIAAALFDGRAR 145
Query: 133 -----------GCF--GAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIM 179
GC G + AR++F + +DL+SWN +++ + + GDM+ A ELFD +
Sbjct: 146 EDAVAWSAMITGCARRGDIGAARDLFDECPVKDLVSWNVMITAYAKRGDMALARELFDQV 205
Query: 180 PERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGR 239
PER+VVSWN+MISGY + G+ +L+LF +M + G + + TM S+L+AC S + G+
Sbjct: 206 PERDVVSWNVMISGYVRCGSHLHALELFEQMQRMGEKPDIVTMLSLLSACADSGDLDVGQ 265
Query: 240 SVHGYTVRTSLKPN---IILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHC 296
+H ++ N ++L ALID+Y+KC ++ A VF SM D+++ WN+++ G
Sbjct: 266 RLHS-SLSDMFSRNGFPVVLGNALIDMYAKCGSMKSAHEVFWSMRDKDVSTWNSIVGGLA 324
Query: 297 IHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYK 356
+HG E I +F ++ G V PDEITF+ V+ AC ++ +GR++F M Y+
Sbjct: 325 LHGHVLESIDMFEKMLKGKV-----RPDEITFVAVLIACSHGGMVDKGREFFNLMQHKYR 379
Query: 357 IKPNFAHYWCMANLYAGAELTEEAEEILRKMP-EDNDNMSFESIMWVSLLSLCRFQGAVA 415
++PN HY CM ++ A L +EA E + M E N S++W +LLS CR G +
Sbjct: 380 VEPNIKHYGCMVDMLGRAGLLKEAFEFIDTMKCEPN------SVIWRTLLSACRVHGEIE 433
Query: 416 MVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELM 458
+ + + + + Y L N+YA G+W ++R+LM
Sbjct: 434 LAKHANRQLLKARNDESGDYVLLSNIYASVGEWFGSEKMRKLM 476
>gi|359491264|ref|XP_002280276.2| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Vitis vinifera]
Length = 684
Score = 249 bits (637), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 155/507 (30%), Positives = 259/507 (51%), Gaps = 17/507 (3%)
Query: 1 MKQLLQIQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCIN-NPGTFCVNAVI 59
+ L QI A ++T L N S + + P+ +L + +P N +I
Sbjct: 87 LSPLQQIHAQVVTQALSSNASLTASLIHCYLCAKNHPNARILFDHYPSPSPPIKLWNVMI 146
Query: 60 KAYSNSCVPDQGVVFYLQMIK-NGFM---PNSYTFVSLFGSCAKTGCVERGGMCHGLALK 115
+ YS + + +L+M+ +G M P+ YTF + SC+ + G + HG+ +K
Sbjct: 147 RTYSKIRNSQEPIHLFLRMLTLDGPMQVVPDEYTFTFVITSCSHQISLIYGEIVHGMVVK 206
Query: 116 NGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHEL 175
+G + L V NS+INM F M+ AR +F QMS RD+ SW S++ G+ + G+M A EL
Sbjct: 207 SGFESNLYVGNSVINMCSVFARMEDARKVFNQMSERDVFSWTSLLGGYAKHGEMDRACEL 266
Query: 176 FDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMM-KSGFRGNDKTMASVLTACGRSAR 234
F++MP RN VSW +MISG+ G +L F M+ N+ + VL+AC
Sbjct: 267 FNMMPVRNDVSWAVMISGFLGCGRYPEALTFFCNMLCDDRVNPNEAVLVCVLSACAHLGA 326
Query: 235 FNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILG 294
++G +H Y + ++ + + TALID+Y+KC +++ A RVF+ + R+++ + +MI G
Sbjct: 327 LDQGNWIHLYIDKIGIRQSSNISTALIDMYAKCGRIDCASRVFNGICKRDVLSFTSMISG 386
Query: 295 HCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDF 354
HG ++ +++F +++ V P+EIT +GV+ C + L+ EG M
Sbjct: 387 LSYHGLGKDALRVFYQMLDENVM-----PNEITILGVLNGCSHSGLVEEGSSILANMESL 441
Query: 355 YKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAV 414
+ I P HY C +L A E A E+++ MP + D ++W +LLS R V
Sbjct: 442 WGIAPKIEHYGCYIDLLGRAGYLERALEVVKTMPMEPD-----IVIWRALLSASRIHHNV 496
Query: 415 AMVERLAKSFVDMDPQDFSRYQFLL-NVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVD 473
+ E++ + D + + LL N+YA G+WE V +R+LM RR PGC ++
Sbjct: 497 NLGEQIISHIGQLKSSDHNGGEVLLSNLYASLGRWERVTEMRKLMVDRRSESSPGCSWIE 556
Query: 474 LKEVVEKLKVGHFWRGGMKEEVNKMME 500
+ +V + +V + E NK+ E
Sbjct: 557 VNGLVHEFRVADQLHPQIVEIRNKLNE 583
>gi|449476974|ref|XP_004154891.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g14470-like [Cucumis sativus]
Length = 759
Score = 249 bits (637), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 147/431 (34%), Positives = 231/431 (53%), Gaps = 17/431 (3%)
Query: 56 NAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALK 115
NA+ AY+ P + + + QM++ G P+ T+V SC+ G + +
Sbjct: 227 NAMQSAYAQKECPKEALNLFHQMLEEGITPDDTTWVVTISSCSSIGDPTLADSILRMIDQ 286
Query: 116 NGVDFELPVMNSLINMYGCFGAMDCARNMFVQM-SPRDLISWNSIVSGHVRSGDMSAAHE 174
+ V +L++M+ FG ++ ARN+F ++ S R+ ++WN ++S + R G +S A E
Sbjct: 287 KHIVLNSFVKTALLDMHAKFGNLEIARNIFDELGSQRNAVTWNIMISAYTRVGKLSLARE 346
Query: 175 LFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKS-GFRGNDKTMASVLTACGRSA 233
LFD MP+R+VVSWN MI+GY+++G S++LF+EM+ + ++ T+ASVL+ACG
Sbjct: 347 LFDNMPKRDVVSWNSMIAGYAQNGESAMSIELFKEMISCMDIQPDEVTIASVLSACGHIG 406
Query: 234 RFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMIL 293
V ++K I +LI +YSKC V A R+F +M R++V +N +I
Sbjct: 407 ALKLSYWVLDIVREKNIKLGISGFNSLIFMYSKCGSVADAHRIFQTMGTRDVVSFNTLIS 466
Query: 294 GHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMID 353
G +G +E IKL T+ I PD +T+IGV+ AC A LL EG+ F+ +
Sbjct: 467 GFAANGHGKEAIKLVL-----TMEEEGIEPDHVTYIGVLTACSHAGLLNEGKNVFKSIQ- 520
Query: 354 FYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGA 413
P HY CM +L A +EA+ +++ MP M + ++ SLL+ R
Sbjct: 521 ----APTVDHYACMVDLLGRAGELDEAKMLIQSMP-----MKPHAGVYGSLLNASRIHKR 571
Query: 414 VAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVD 473
V + E A +++PQ+ Y L N+YA G+WEDV RVRE+MKK + + G V+
Sbjct: 572 VGLGELAASKLFELEPQNLGNYVLLSNIYASFGRWEDVKRVREMMKKGGLKKSVGMSWVE 631
Query: 474 LKEVVEKLKVG 484
K V K VG
Sbjct: 632 YKGQVHKFTVG 642
Score = 149 bits (375), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 101/398 (25%), Positives = 174/398 (43%), Gaps = 72/398 (18%)
Query: 1 MKQLLQIQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIK 60
++QL Q HL+ + L +N + ++ L+ + P Y +F +P + ++K
Sbjct: 14 IRQLRQFHGHLVHNSLHSHNYWVSLLLINCTRLHAHPAYVDSIFTSSPSPDASVYSCMLK 73
Query: 61 AYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDF 120
YS +Q V + P + ++ L K+G M H LK G
Sbjct: 74 YYSRMGAHNQVVSLFKCTHSLNLRPQPFVYIYLIKLAGKSG-----NMFHAYVLKLGHID 128
Query: 121 ELPVMNSLINMYGCFGAMDCARNMFVQMSPRDL--------------------------- 153
+ + N++++MY G +D ARN+F QM+ R L
Sbjct: 129 DHFIRNAILDMYAKNGQVDLARNLFEQMAERTLADWNSMISGCWKSGNETEAVVLFNMMP 188
Query: 154 ----ISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFRE 209
I+W S+V+G+ + GD+ +A FD MPER+VVSWN M S Y++ P +L LF +
Sbjct: 189 ARNIITWTSMVTGYAKMGDLESARRYFDEMPERSVVSWNAMQSAYAQKECPKEALNLFHQ 248
Query: 210 MMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDL------ 263
M++ G +D T +++C S+ + + N + TAL+D+
Sbjct: 249 MLEEGITPDDTTWVVTISSCSSIGDPTLADSILRMIDQKHIVLNSFVKTALLDMHAKFGN 308
Query: 264 --------------------------YSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCI 297
Y++ K+ +A+ +FD+M R++V WN+MI G+
Sbjct: 309 LEIARNIFDELGSQRNAVTWNIMISAYTRVGKLSLARELFDNMPKRDVVSWNSMIAGYAQ 368
Query: 298 HGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICAC 335
+G+ I+LF +++ I PDE+T V+ AC
Sbjct: 369 NGESAMSIELFKEMISCM----DIQPDEVTIASVLSAC 402
>gi|449460189|ref|XP_004147828.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g14470-like [Cucumis sativus]
Length = 759
Score = 249 bits (637), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 147/431 (34%), Positives = 231/431 (53%), Gaps = 17/431 (3%)
Query: 56 NAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALK 115
NA+ AY+ P + + + QM++ G P+ T+V SC+ G + +
Sbjct: 227 NAMQSAYAQKECPKEALNLFHQMLEEGITPDDTTWVVTISSCSSIGDPTLADSILRMIDQ 286
Query: 116 NGVDFELPVMNSLINMYGCFGAMDCARNMFVQM-SPRDLISWNSIVSGHVRSGDMSAAHE 174
+ V +L++M+ FG ++ ARN+F ++ S R+ ++WN ++S + R G +S A E
Sbjct: 287 KHIVLNSFVKTALLDMHAKFGNLEIARNIFDELGSQRNAVTWNIMISAYTRVGKLSLARE 346
Query: 175 LFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKS-GFRGNDKTMASVLTACGRSA 233
LFD MP+R+VVSWN MI+GY+++G S++LF+EM+ + ++ T+ASVL+ACG
Sbjct: 347 LFDNMPKRDVVSWNSMIAGYAQNGESAMSIELFKEMISCMDIQPDEVTIASVLSACGHIG 406
Query: 234 RFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMIL 293
V ++K I +LI +YSKC V A R+F +M R++V +N +I
Sbjct: 407 ALKLSYWVLDIVREKNIKLGISGFNSLIFMYSKCGSVADAHRIFQTMGTRDVVSFNTLIS 466
Query: 294 GHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMID 353
G +G +E IKL T+ I PD +T+IGV+ AC A LL EG+ F+ +
Sbjct: 467 GFAANGHGKEAIKLVL-----TMEEEGIEPDHVTYIGVLTACSHAGLLNEGKNVFKSIQ- 520
Query: 354 FYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGA 413
P HY CM +L A +EA+ +++ MP M + ++ SLL+ R
Sbjct: 521 ----APTVDHYACMVDLLGRAGELDEAKMLIQSMP-----MKPHAGVYGSLLNASRIHKR 571
Query: 414 VAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVD 473
V + E A +++PQ+ Y L N+YA G+WEDV RVRE+MKK + + G V+
Sbjct: 572 VGLGELAASKLFELEPQNLGNYVLLSNIYASFGRWEDVKRVREMMKKGGLKKSVGMSWVE 631
Query: 474 LKEVVEKLKVG 484
K V K VG
Sbjct: 632 YKGQVHKFTVG 642
Score = 147 bits (372), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 100/398 (25%), Positives = 174/398 (43%), Gaps = 72/398 (18%)
Query: 1 MKQLLQIQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIK 60
++QL Q HL+ + L +N + ++ L+ + P Y +F +P + ++K
Sbjct: 14 IRQLRQFHGHLVHNSLHSHNYWVSLLLINCTRLHAHPAYVDSIFTSSPSPDASVYSCMLK 73
Query: 61 AYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDF 120
YS +Q V + P + ++ L K+G + H LK G
Sbjct: 74 YYSRMGAHNQVVSLFKCTHSLNLRPQPFVYIYLIKLAGKSG-----NLFHAYVLKLGHID 128
Query: 121 ELPVMNSLINMYGCFGAMDCARNMFVQMSPRDL--------------------------- 153
+ + N++++MY G +D ARN+F QM+ R L
Sbjct: 129 DHFIRNAILDMYAKNGQVDLARNLFEQMAERTLADWNSMISGCWKSGNETEAVVLFNMMP 188
Query: 154 ----ISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFRE 209
I+W S+V+G+ + GD+ +A FD MPER+VVSWN M S Y++ P +L LF +
Sbjct: 189 ARNIITWTSMVTGYAKMGDLESARRYFDEMPERSVVSWNAMQSAYAQKECPKEALNLFHQ 248
Query: 210 MMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDL------ 263
M++ G +D T +++C S+ + + N + TAL+D+
Sbjct: 249 MLEEGITPDDTTWVVTISSCSSIGDPTLADSILRMIDQKHIVLNSFVKTALLDMHAKFGN 308
Query: 264 --------------------------YSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCI 297
Y++ K+ +A+ +FD+M R++V WN+MI G+
Sbjct: 309 LEIARNIFDELGSQRNAVTWNIMISAYTRVGKLSLARELFDNMPKRDVVSWNSMIAGYAQ 368
Query: 298 HGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICAC 335
+G+ I+LF +++ I PDE+T V+ AC
Sbjct: 369 NGESAMSIELFKEMISCM----DIQPDEVTIASVLSAC 402
>gi|225444117|ref|XP_002266487.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Vitis vinifera]
Length = 553
Score = 249 bits (637), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 143/472 (30%), Positives = 252/472 (53%), Gaps = 16/472 (3%)
Query: 6 QIQAHLITSGLFFNNSFWTINLLKH-SADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSN 64
++ AH+ +GL ++ + N L H G +F + + N ++ AY++
Sbjct: 95 EVHAHVTKTGL--DSDVYVGNALLHLYGSTGQVTDARRLFDGMPHRDLASWNTLLGAYND 152
Query: 65 SCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPV 124
+ V + +V + +M+ G + + V +F +C K G E G HG +K G+ L +
Sbjct: 153 NAV--EVLVLFKRMMYEGIGGDHISMVIVFSACGKIGGTEFGKEVHGYVIKVGIRPALSL 210
Query: 125 MNSLINMYGCFGAMDCARNMFVQMSP-RDLISWNSIVSGHVRSGDMSAAHELFDIMPERN 183
N+L+ +Y G MD A+++FV+M+ RD++S + +G+V G + A +FD M ++
Sbjct: 211 SNALLGVYTKCGEMDAAQSLFVEMAAMRDVVSHTILFNGYVDMGSIDLARGIFDQMSVKD 270
Query: 184 VVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHG 243
+VSWN MI Y K+ +P +++LFR+M ++ TM SVL AC A GR H
Sbjct: 271 LVSWNSMIHAYVKAKHPKKAIELFRKMENEMVEPDETTMVSVLAACASLADLQNGRLAHR 330
Query: 244 YTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEE 303
+ ++ + + ++ + TALID+Y+KC +E A F M R++ W I G HG ++
Sbjct: 331 FIIQNNPRQDLFVGTALIDMYAKCGSLEEAMVTFYKMDSRDVFTWTTAIEGLANHGHGDK 390
Query: 304 GIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAH 363
+ LFT + I P++ TF+ V+ AC R+ L+ EG F++M++ Y+I+P H
Sbjct: 391 ALSLFTEM-----EKQGIKPNQATFVSVLMACSRSGLVKEGCLLFKRMVEAYQIQPKIEH 445
Query: 364 YWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKS 423
C+ ++ + A L +AEE ++ MP ++ + +LLS C + E++A
Sbjct: 446 LGCLLDILSRAGLLHQAEEFIKLMPPKEKIIANK-----TLLSACMNHLEYDLGEKIANG 500
Query: 424 FVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLK 475
++ Q + + L N YA+AGQW +VA+ R +MK+ + ++PG VD+K
Sbjct: 501 LTELSSQSHATHILLSNFYALAGQWAEVAKTRRVMKEIDIRKVPGISSVDIK 552
Score = 144 bits (364), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 98/365 (26%), Positives = 160/365 (43%), Gaps = 72/365 (19%)
Query: 56 NAVIKAYSNSCVPDQGVVFYLQMIKNGFM-PNSYTFVSLFGSCAKTGCVERGGMCHGLAL 114
N +I+A+S S P ++ Y IK F+ P+ YT+ ++ +C + G + +G H
Sbjct: 42 NCLIRAFSRSPTPITAILIYNHFIKGRFVFPDKYTYPAMLKACWRMGSLSKGKEVHAHVT 101
Query: 115 KNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHE 174
K G+D ++ V N+L+++YG G + AR +F M RDL SWN+++ +
Sbjct: 102 KTGLDSDVYVGNALLHLYGSTGQVTDARRLFDGMPHRDLASWNTLLGAY----------- 150
Query: 175 LFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSAR 234
+ N L LF+ MM G G+ +M V +ACG+
Sbjct: 151 ----------------------NDNAVEVLVLFKRMMYEGIGGDHISMVIVFSACGKIGG 188
Query: 235 FNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQR------------------- 275
G+ VHGY ++ ++P + L AL+ +Y+KC +++ AQ
Sbjct: 189 TEFGKEVHGYVIKVGIRPALSLSNALLGVYTKCGEMDAAQSLFVEMAAMRDVVSHTILFN 248
Query: 276 -------------VFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSIS 322
+FD M+ ++LV WN+MI + P++ I+LF + N V
Sbjct: 249 GYVDMGSIDLARGIFDQMSVKDLVSWNSMIHAYVKAKHPKKAIELFRKMENEMV-----E 303
Query: 323 PDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEE 382
PDE T + V+ AC L GR R +I + F + ++YA EEA
Sbjct: 304 PDETTMVSVLAACASLADLQNGRLAHRFIIQNNPRQDLFVGT-ALIDMYAKCGSLEEAMV 362
Query: 383 ILRKM 387
KM
Sbjct: 363 TFYKM 367
>gi|356502400|ref|XP_003520007.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g31430-like [Glycine max]
Length = 591
Score = 249 bits (636), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 148/471 (31%), Positives = 251/471 (53%), Gaps = 12/471 (2%)
Query: 6 QIQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSNS 65
+I A ++ +GL F+ + +L+ A+ G + VF+ + N +I Y
Sbjct: 129 KIHAFVVKTGLEFD-PYVCNSLMDMYAELGLVEGFTQVFEEMPERDAVSWNIMISGYVRC 187
Query: 66 CVPDQGVVFYLQM-IKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPV 124
++ V Y +M +++ PN T VS +CA +E G H + N +D P+
Sbjct: 188 KRFEEAVDVYRRMQMESNEKPNEATVVSTLSACAVLRNLELGKEIHDY-IANELDLT-PI 245
Query: 125 M-NSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERN 183
M N+L++MY G + AR +F M +++ W S+V+G+V G + A LF+ P R+
Sbjct: 246 MGNALLDMYCKCGCVSVAREIFDAMIVKNVNCWTSMVTGYVICGQLDQARYLFERSPSRD 305
Query: 184 VVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHG 243
VV W MI+GY + + ++ LF EM G + + ++LT C + +G+ +H
Sbjct: 306 VVLWTAMINGYVQFNHFEDAIALFGEMQIRGVEPDKFIVVTLLTGCAQLGALEQGKWIHN 365
Query: 244 YTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEE 303
Y +K + ++ TALI++Y+KC +E + +F+ + D + W ++I G ++GK E
Sbjct: 366 YIDENRIKMDAVVSTALIEMYAKCGCIEKSLEIFNGLKDMDTTSWTSIICGLAMNGKTSE 425
Query: 304 GIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAH 363
++LF A+ + PD+ITF+ V+ AC A L+ EGRK F M Y I+PN H
Sbjct: 426 ALELFEAM-----QTCGLKPDDITFVAVLSACGHAGLVEEGRKLFHSMSSIYHIEPNLEH 480
Query: 364 YWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKS 423
Y C +L A L +EAEE+++K+P+ N+ + ++ +LLS CR G + M ERLA +
Sbjct: 481 YGCFIDLLGRAGLLQEAEELVKKLPDQNNEIIVP--LYGALLSACRTYGNIDMGERLATA 538
Query: 424 FVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDL 474
+ D S + L ++YA A +WEDV +VR MK + ++PG +++
Sbjct: 539 LAKVKSSDSSLHTLLASIYASADRWEDVRKVRSKMKDLGIKKVPGYSAIEV 589
Score = 158 bits (399), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 114/428 (26%), Positives = 190/428 (44%), Gaps = 62/428 (14%)
Query: 1 MKQLLQIQAHLITSGLFFNNSFWTINLLKHSAD--FGSPDYTVLVFKCINNPGTFCVNAV 58
M QL QIQAH+ GL + L+ S D G +Y +F I++P F N +
Sbjct: 21 MSQLKQIQAHIFCFGLQQDRDILN-KLMAFSMDSSLGDFNYANRIFNHIHHPSLFIYNLM 79
Query: 59 IKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGV 118
IKA+ + + Q+ + G P++YT+ + G V G H +K G+
Sbjct: 80 IKAFVKRGSLRSAISLFQQLRERGVWPDNYTYPYVLKGIGCIGEVREGEKIHAFVVKTGL 139
Query: 119 DFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDI 178
+F+ V NSL++MY G ++ +F +M RD +SWN ++SG+VR A +++
Sbjct: 140 EFDPYVCNSLMDMYAELGLVEGFTQVFEEMPERDAVSWNIMISGYVRCKRFEEAVDVYR- 198
Query: 179 MPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEG 238
R M+S + N+ T+ S L+AC G
Sbjct: 199 -----------------------------RMQMESNEKPNEATVVSTLSACAVLRNLELG 229
Query: 239 RSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIH 298
+ +H Y + L I+ AL+D+Y KC V VA+ +FD+M +N+ CW +M+ G+ I
Sbjct: 230 KEIHDY-IANELDLTPIMGNALLDMYCKCGCVSVAREIFDAMIVKNVNCWTSMVTGYVIC 288
Query: 299 GK-----------PEEGIKLFTALVNGTVAGG---------------SISPDEITFIGVI 332
G+ P + L+TA++NG V + PD+ + ++
Sbjct: 289 GQLDQARYLFERSPSRDVVLWTAMINGYVQFNHFEDAIALFGEMQIRGVEPDKFIVVTLL 348
Query: 333 CACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDND 392
C + L +G K+ ID +IK + + +YA E++ EI + +D D
Sbjct: 349 TGCAQLGALEQG-KWIHNYIDENRIKMDAVVSTALIEMYAKCGCIEKSLEIFNGL-KDMD 406
Query: 393 NMSFESIM 400
S+ SI+
Sbjct: 407 TTSWTSII 414
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 71/303 (23%), Positives = 132/303 (43%), Gaps = 21/303 (6%)
Query: 151 RDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREM 210
RD+++ S GD + A+ +F+ + ++ +N+MI + K G+ ++ LF+++
Sbjct: 40 RDILNKLMAFSMDSSLGDFNYANRIFNHIHHPSLFIYNLMIKAFVKRGSLRSAISLFQQL 99
Query: 211 MKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKV 270
+ G ++ T VL G EG +H + V+T L+ + + +L+D+Y++ V
Sbjct: 100 RERGVWPDNYTYPYVLKGIGCIGEVREGEKIHAFVVKTGLEFDPYVCNSLMDMYAELGLV 159
Query: 271 EVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIG 330
E +VF+ M +R+ V WN MI G+ + EE + ++ + + + P+E T +
Sbjct: 160 EGFTQVFEEMPERDAVSWNIMISGYVRCKRFEEAVDVYRRMQMES----NEKPNEATVVS 215
Query: 331 VICACV---RAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKM 387
+ AC EL E Y +D I N + ++Y A EI M
Sbjct: 216 TLSACAVLRNLELGKEIHDYIANELDLTPIMGN-----ALLDMYCKCGCVSVAREIFDAM 270
Query: 388 PEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQ 447
N N W S+++ G + L F +D + ++N Y
Sbjct: 271 IVKNVN------CWTSMVTGYVICGQLDQARYL---FERSPSRDVVLWTAMINGYVQFNH 321
Query: 448 WED 450
+ED
Sbjct: 322 FED 324
>gi|356558692|ref|XP_003547637.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g17630-like [Glycine max]
Length = 696
Score = 249 bits (636), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 136/456 (29%), Positives = 237/456 (51%), Gaps = 22/456 (4%)
Query: 49 NPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGM 108
P + +++ +++ + D+ + + M G + + CA V+ G
Sbjct: 230 QPNSVTWTSLLSSHARCGLYDETLELFKVMRTRGIEIGAEALAVVLSVCADMAEVDWGKE 289
Query: 109 CHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGD 168
HG +K G + L V N+LI YG M A +F+++ ++L+SWN+++S + SG
Sbjct: 290 IHGYVVKGGYEDYLFVKNALIGTYGKHQHMGDAHKVFLEIKNKNLVSWNALISSYAESGL 349
Query: 169 MSAAHELFDIMPER----------NVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGN 218
A+ F M + NV+SW+ +ISG++ G SL+LFR+M + N
Sbjct: 350 CDEAYAAFLHMEKSDSDDHSLVRPNVISWSAVISGFAYKGRGEKSLELFRQMQLAKVMAN 409
Query: 219 DKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFD 278
T++SVL+ C A N GR +HGY +R + NI++ LI++Y KC + VFD
Sbjct: 410 CVTISSVLSVCAELAALNLGRELHGYAIRNMMSDNILVGNGLINMYMKCGDFKEGHLVFD 469
Query: 279 SMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRA 338
++ R+L+ WN++I G+ +HG E ++ F ++ + PD ITF+ ++ AC A
Sbjct: 470 NIEGRDLISWNSLIGGYGMHGLGENALRTFNEMIR-----ARMKPDNITFVAILSACSHA 524
Query: 339 ELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMP-EDNDNMSFE 397
L+ GR F QM+ ++I+PN HY CM +L A L +EA +I+R MP E N+
Sbjct: 525 GLVAAGRNLFDQMVTEFRIEPNVEHYACMVDLLGRAGLLKEATDIVRNMPIEPNE----- 579
Query: 398 SIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVREL 457
+W +LL+ CR + +VE A + + + + L N+YA G+W+D ARVR
Sbjct: 580 -YVWGALLNSCRMYKDMDIVEETASQILTLKSKITGSFMLLSNIYAANGRWDDSARVRVS 638
Query: 458 MKKRRMGRMPGCRLVDLKEVVEKLKVGHFWRGGMKE 493
+ + + ++PG +++++ V G+ G+++
Sbjct: 639 ARTKGLKKIPGQSWIEVRKKVYTFSAGNLVHFGLED 674
Score = 142 bits (358), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 88/301 (29%), Positives = 149/301 (49%), Gaps = 5/301 (1%)
Query: 56 NAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALK 115
N++I+A + + Y++M K GF+P+ +T + +C+ G + H AL+
Sbjct: 101 NSIIRANVSHGYHQHALELYVEMRKLGFLPDGFTLPLVIRACSSLGSSYLCRIVHCHALQ 160
Query: 116 NGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHEL 175
G L V+N L+ MYG G M+ AR +F M R ++SWN++VSG+ + D A +
Sbjct: 161 MGFRNHLHVVNELVGMYGKLGRMEDARQLFDGMFVRSIVSWNTMVSGYALNRDSLGASRV 220
Query: 176 FDIMP----ERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGR 231
F M + N V+W ++S +++ G +L+LF+ M G + +A VL+ C
Sbjct: 221 FKRMELEGLQPNSVTWTSLLSSHARCGLYDETLELFKVMRTRGIEIGAEALAVVLSVCAD 280
Query: 232 SARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAM 291
A + G+ +HGY V+ + + + ALI Y K Q + A +VF + ++NLV WNA+
Sbjct: 281 MAEVDWGKEIHGYVVKGGYEDYLFVKNALIGTYGKHQHMGDAHKVFLEIKNKNLVSWNAL 340
Query: 292 ILGHCIHGKPEEGIKLFTALVNGTVAGGS-ISPDEITFIGVICACVRAELLTEGRKYFRQ 350
I + G +E F + S + P+ I++ VI + + FRQ
Sbjct: 341 ISSYAESGLCDEAYAAFLHMEKSDSDDHSLVRPNVISWSAVISGFAYKGRGEKSLELFRQ 400
Query: 351 M 351
M
Sbjct: 401 M 401
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 47/196 (23%), Positives = 98/196 (50%), Gaps = 8/196 (4%)
Query: 159 IVSGHVRSGDMSAAHELFDIMPE---RNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGF 215
+++ + R +S A ++FD +P +++ WN +I G +L+L+ EM K GF
Sbjct: 69 LIAVYARFAFLSHARKVFDAIPLESLHHLLLWNSIIRANVSHGYHQHALELYVEMRKLGF 128
Query: 216 RGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQR 275
+ T+ V+ AC R VH + ++ + ++ + L+ +Y K ++E A++
Sbjct: 129 LPDGFTLPLVIRACSSLGSSYLCRIVHCHALQMGFRNHLHVVNELVGMYGKLGRMEDARQ 188
Query: 276 VFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICAC 335
+FD M R++V WN M+ G+ ++ ++F + + G + P+ +T+ ++ +
Sbjct: 189 LFDGMFVRSIVSWNTMVSGYALNRDSLGASRVFKRM---ELEG--LQPNSVTWTSLLSSH 243
Query: 336 VRAELLTEGRKYFRQM 351
R L E + F+ M
Sbjct: 244 ARCGLYDETLELFKVM 259
>gi|242075862|ref|XP_002447867.1| hypothetical protein SORBIDRAFT_06g017170 [Sorghum bicolor]
gi|241939050|gb|EES12195.1| hypothetical protein SORBIDRAFT_06g017170 [Sorghum bicolor]
Length = 688
Score = 249 bits (636), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 133/445 (29%), Positives = 237/445 (53%), Gaps = 17/445 (3%)
Query: 37 PDYTVLVFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGS 96
P+ VF + N++I Y + + ++ +++M+ GF P+ T S+ +
Sbjct: 202 PEDARRVFDAMPERNVVSWNSLITCYEQNGPVGEALMLFVEMMAAGFSPDEVTLSSVMSA 261
Query: 97 CAKTGCVERGGMCHGLALK-NGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLIS 155
CA G H +K + + ++ + N+L++MY G AR +F M R ++S
Sbjct: 262 CAGLAADREGRQVHAHMVKCDRLRDDMVLNNALVDMYAKCGRTWEARCIFDSMPSRSIVS 321
Query: 156 WNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGF 215
SI++G+ +S ++ A +F M E+NV++WN++I+ Y+++G +++LF ++ +
Sbjct: 322 ETSILTGYAKSANVEDAQVVFSQMVEKNVIAWNVLIAAYAQNGEEEEAIRLFVQLKRDSI 381
Query: 216 RGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLK------PNIILDTALIDLYSKCQK 269
T +VL ACG A G+ H + ++ + ++ + +L+D+Y K
Sbjct: 382 WPTHYTYGNVLNACGNIADLQLGQQAHVHVLKEGFRFDFGPESDVFVGNSLVDMYLKTGS 441
Query: 270 VEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFI 329
++ +VF+ MA R+ V WNAMI+G+ +G+ ++ + LF ++ + +PD +T I
Sbjct: 442 IDDGAKVFERMAARDNVSWNAMIVGYAQNGRAKDALHLFERML-----CSNENPDSVTMI 496
Query: 330 GVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPE 389
GV+ AC + L+ EGR+YF M + + I P+ HY CM +L A +EAEE++ MP
Sbjct: 497 GVLSACGHSGLVDEGRRYFHSMTEDHGITPSRDHYTCMVDLLGRAGHLKEAEELINDMP- 555
Query: 390 DNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWE 449
M +S++W SLL CR V + E A ++DPQ+ Y L N+YA G+W
Sbjct: 556 ----MEPDSVLWASLLGACRLHKNVELGEWTAGRLFELDPQNSGPYVLLSNMYAEMGKWA 611
Query: 450 DVARVRELMKKRRMGRMPGCRLVDL 474
+V RVR MK R + + PGC +++
Sbjct: 612 EVFRVRRSMKDRGVSKQPGCSWIEI 636
Score = 150 bits (380), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 98/354 (27%), Positives = 171/354 (48%), Gaps = 16/354 (4%)
Query: 109 CHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGD 168
H LK+ V E ++N+L++ Y G + AR +F ++ R+ S+N+++S + R G
Sbjct: 39 AHARILKSPVAGETFLLNTLVSTYARLGRLRDARRVFDEIPLRNTFSYNALLSAYARLGR 98
Query: 169 MSAAHELFDIMPERNVVSWNIMISGYSKSG--NPGCSLKLFREMMKSGFRGNDKTMASVL 226
A LF+ +P+ + S+N +++ ++ G + +L+ M F N + AS L
Sbjct: 99 PDEARALFEAIPDPDQCSYNAVVAALARHGRGHAADALRFLAAMHADDFVLNAYSFASAL 158
Query: 227 TACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLV 286
+AC G VHG R+ ++ + +AL+D+Y+KC++ E A+RVFD+M +RN+V
Sbjct: 159 SACAAEKDSRTGEQVHGLVARSPHADDVHIRSALVDMYAKCERPEDARRVFDAMPERNVV 218
Query: 287 CWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRK 346
WN++I + +G E + LF ++ SPDE+T V+ AC EGR+
Sbjct: 219 SWNSLITCYEQNGPVGEALMLFVEMM-----AAGFSPDEVTLSSVMSACAGLAADREGRQ 273
Query: 347 YFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLS 406
M+ +++ + + ++YA T EA I MP S VS S
Sbjct: 274 VHAHMVKCDRLRDDMVLNNALVDMYAKCGRTWEARCIFDSMP---------SRSIVSETS 324
Query: 407 LCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKK 460
+ A VE F M ++ + L+ YA G+ E+ R+ +K+
Sbjct: 325 ILTGYAKSANVEDAQVVFSQMVEKNVIAWNVLIAAYAQNGEEEEAIRLFVQLKR 378
Score = 124 bits (312), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 93/358 (25%), Positives = 151/358 (42%), Gaps = 101/358 (28%)
Query: 43 VFKCINNPGTFCVNAVIKAYSNSCVPDQ-------------------------------- 70
VF I TF NA++ AY+ PD+
Sbjct: 74 VFDEIPLRNTFSYNALLSAYARLGRPDEARALFEAIPDPDQCSYNAVVAALARHGRGHAA 133
Query: 71 -GVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLI 129
+ F M + F+ N+Y+F S +CA G HGL ++ ++ + ++L+
Sbjct: 134 DALRFLAAMHADDFVLNAYSFASALSACAAEKDSRTGEQVHGLVARSPHADDVHIRSALV 193
Query: 130 NMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNI 189
+MY + AR +F M R+++SWNS
Sbjct: 194 DMYAKCERPEDARRVFDAMPERNVVSWNS------------------------------- 222
Query: 190 MISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVR-T 248
+I+ Y ++G G +L LF EMM +GF ++ T++SV++AC A EGR VH + V+
Sbjct: 223 LITCYEQNGPVGEALMLFVEMMAAGFSPDEVTLSSVMSACAGLAADREGRQVHAHMVKCD 282
Query: 249 SLKPNIILDTALIDLYSKCQK-------------------------------VEVAQRVF 277
L+ +++L+ AL+D+Y+KC + VE AQ VF
Sbjct: 283 RLRDDMVLNNALVDMYAKCGRTWEARCIFDSMPSRSIVSETSILTGYAKSANVEDAQVVF 342
Query: 278 DSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICAC 335
M ++N++ WN +I + +G+ EE I+LF L SI P T+ V+ AC
Sbjct: 343 SQMVEKNVIAWNVLIAAYAQNGEEEEAIRLFVQLKR-----DSIWPTHYTYGNVLNAC 395
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/100 (25%), Positives = 49/100 (49%), Gaps = 9/100 (9%)
Query: 238 GRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCI 297
R+ H +++ + L L+ Y++ ++ A+RVFD + RN +NA++ +
Sbjct: 36 ARAAHARILKSPVAGETFLLNTLVSTYARLGRLRDARRVFDEIPLRNTFSYNALLSAYAR 95
Query: 298 HGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVR 337
G+P+E LF A+ + PD+ ++ V+ A R
Sbjct: 96 LGRPDEARALFEAIPD---------PDQCSYNAVVAALAR 126
>gi|225452922|ref|XP_002278886.1| PREDICTED: pentatricopeptide repeat-containing protein At3g29230
[Vitis vinifera]
Length = 594
Score = 249 bits (636), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 158/547 (28%), Positives = 253/547 (46%), Gaps = 75/547 (13%)
Query: 1 MKQLLQIQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIK 60
+ Q+ QI A ++ + L SF L+ + V VF I +P N +I+
Sbjct: 30 LNQVKQIHAQVLKANLH-RESFVGQKLIAAFSLCRQMTLAVNVFNQIQDPDVLLYNTLIR 88
Query: 61 AYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDF 120
A+ + P + +M +G +++T+ L +C+ V M H K G
Sbjct: 89 AHVRNSEPLLAFSVFFEMQDSGVCADNFTYPFLLKACSGKVWVRVVEMIHAQVEKMGFCL 148
Query: 121 ELPVMNSLINMY-GC--------------------------------FGAMDCARNMFVQ 147
++ V NSLI+ Y C G + AR +F +
Sbjct: 149 DIFVPNSLIDSYFKCGLDGVAAARKVFEVMAERDTVSWNSMIGGLVKVGELGEARRLFDE 208
Query: 148 MSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWN------------------- 188
M RD +SWN+I+ G+V++G+M+AA ELF+ MP RNVVSW+
Sbjct: 209 MPERDTVSWNTILDGYVKAGEMNAAFELFEKMPARNVVSWSTMVLGYSKAGDMDMARILF 268
Query: 189 ------------IMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFN 236
IMISGY++ G ++ L+ +M ++G + +D T+ S+L+AC S
Sbjct: 269 DKMPVKNLVPWTIMISGYAEKGLAKDAINLYNQMEEAGLKFDDGTVISILSACAVSGLLG 328
Query: 237 EGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHC 296
G+ VH RT K + + ALID+Y+KC +E A +F M +++V WNA+I G
Sbjct: 329 LGKRVHASIERTRFKCSTPVSNALIDMYAKCGSLENALSIFHGMVRKDVVSWNAIIQGLA 388
Query: 297 IHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYK 356
+HG E+ ++LF+ + G PD++TF+GV+CAC A + EG YF M Y
Sbjct: 389 MHGHGEKALQLFSRM-----KGEGFVPDKVTFVGVLCACTHAGFVDEGLHYFHAMERDYG 443
Query: 357 IKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAM 416
+ P HY CM +L +EA ++ MP + +I+W +LL CR A +
Sbjct: 444 VPPEVEHYGCMVDLLGRGGRLKEAFRLVHSMP-----LEPNAIIWGTLLGACRMHSATGL 498
Query: 417 VERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLKE 476
E + V + D L N+YA AG W++ A +R MK + + G +++ +
Sbjct: 499 AEEVFDRLVKSELSDSGNLSMLSNIYAAAGDWDNFANIRLRMKSTSIQKPSGGSSIEVDD 558
Query: 477 VVEKLKV 483
V + V
Sbjct: 559 EVHEFTV 565
Score = 43.5 bits (101), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 48/239 (20%), Positives = 96/239 (40%), Gaps = 29/239 (12%)
Query: 231 RSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNA 290
R + N+ + +H ++ +L + LI +S C+++ +A VF+ + D +++ +N
Sbjct: 26 RCSSLNQVKQIHAQVLKANLHRESFVGQKLIAAFSLCRQMTLAVNVFNQIQDPDVLLYNT 85
Query: 291 MILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFR- 349
+I H + +P +F + + V D T+ ++ AC G+ + R
Sbjct: 86 LIRAHVRNSEPLLAFSVFFEMQDSGVCA-----DNFTYPFLLKAC-------SGKVWVRV 133
Query: 350 -QMIDFYKIKPNFAHYWCMAN------LYAGAELTEEAEEILRKMPEDNDNMSFESIMWV 402
+MI K F + N G + A ++ M E +++ W
Sbjct: 134 VEMIHAQVEKMGFCLDIFVPNSLIDSYFKCGLDGVAAARKVFEVMAER------DTVSWN 187
Query: 403 SLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKR 461
S++ G + RL F +M +D + +L+ Y AG+ + E M R
Sbjct: 188 SMIGGLVKVGELGEARRL---FDEMPERDTVSWNTILDGYVKAGEMNAAFELFEKMPAR 243
>gi|297810935|ref|XP_002873351.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297319188|gb|EFH49610.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 1281
Score = 249 bits (636), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 143/440 (32%), Positives = 241/440 (54%), Gaps = 14/440 (3%)
Query: 38 DYTVLVFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSC 97
+Y + ++NP + N VI+ +SNS P++ + Y+Q++++GF P+ T+ L S
Sbjct: 805 NYAYKLLSKLSNPPDYGWNFVIRGFSNSKNPEKSIRVYIQILRSGFSPDHMTYPFLLKSS 864
Query: 98 AKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWN 157
++ E GG H +K G++++L + N+LI+MYG F AR +F +M ++L++WN
Sbjct: 865 SRLSNREIGGSLHCSVVKTGLEWDLFISNTLIHMYGSFRDKASARKLFDEMPYKNLVTWN 924
Query: 158 SIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSG-FR 216
SI+ + +SGD+ +A +FD M R+VV+W+ MI GY KSG +L++F +MM+ G +
Sbjct: 925 SILDSYAKSGDVVSARLVFDEMTMRDVVTWSSMIDGYVKSGEYNEALEIFDQMMRMGSSK 984
Query: 217 GNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRV 276
N+ TM SVL AC N G+ VH Y + L +IL T+LID+Y+KC + A V
Sbjct: 985 ANEVTMVSVLCACAHLGELNRGKVVHRYILDVHLPLTVILQTSLIDMYAKCGSIGDAWGV 1044
Query: 277 F--DSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICA 334
F S+ + + WNAMI G HG E + LF + I PDEITF+ ++ A
Sbjct: 1045 FCGASVKKTDALMWNAMIGGLASHGFIRESLLLFHKMRE-----SEIDPDEITFLCLLAA 1099
Query: 335 CVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNM 394
C L+ E +F + + +P HY CM ++ + A L ++A + + +M +
Sbjct: 1100 CSHGGLVKEAWHFFTSLKE-SGAEPKSEHYACMVDVLSRAGLVKDAHDFISEML-----I 1153
Query: 395 SFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARV 454
+ +L + C G + + E + K +++ P + RY L NVYA+ Q+ +
Sbjct: 1154 KPTGSVLGALFNGCINHGNLELAETVGKKLIELQPHNDGRYVGLANVYAINKQFGAARSM 1213
Query: 455 RELMKKRRMGRMPGCRLVDL 474
RE M+K+ + ++ G ++ L
Sbjct: 1214 REAMEKKGVKKIAGHSIIKL 1233
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 56/221 (25%), Positives = 103/221 (46%), Gaps = 35/221 (15%)
Query: 166 SGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASV 225
+ D++ A++L + WN +I G+S S NP S++++ ++++SGF + T +
Sbjct: 801 TSDVNYAYKLLSKLSNPPDYGWNFVIRGFSNSKNPEKSIRVYIQILRSGFSPDHMTYPFL 860
Query: 226 LTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALI------------------------ 261
L + R + G S+H V+T L+ ++ + LI
Sbjct: 861 LKSSSRLSNREIGGSLHCSVVKTGLEWDLFISNTLIHMYGSFRDKASARKLFDEMPYKNL 920
Query: 262 -------DLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNG 314
D Y+K V A+ VFD M R++V W++MI G+ G+ E +++F ++
Sbjct: 921 VTWNSILDSYAKSGDVVSARLVFDEMTMRDVVTWSSMIDGYVKSGEYNEALEIFDQMMR- 979
Query: 315 TVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFY 355
GS +E+T + V+CAC L G+ R ++D +
Sbjct: 980 ---MGSSKANEVTMVSVLCACAHLGELNRGKVVHRYILDVH 1017
Score = 44.3 bits (103), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 57/227 (25%), Positives = 91/227 (40%), Gaps = 13/227 (5%)
Query: 187 WNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTV 246
+N +I G K G SLKL EM +G + T+ + F +
Sbjct: 477 YNNIIEGMCKEGRSEESLKLLAEMKDAGVEPSQYTLNCIYGCLAERCDFAGALDLLKKMR 536
Query: 247 RTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMAD----RNLVCWNAMILGHCIHGKPE 302
+P I T L+ + K A + D +A R++V + A I G + +
Sbjct: 537 FYGFEPWIKHTTCLVKKLCENGKAVDACKYIDDVAGEGFLRHMVSYTAAIEGLIRNEGVD 596
Query: 303 EGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFA 362
G++LF T A G PD I + +I A +A TE F +M+ +KP+ A
Sbjct: 597 RGLELF----RDTCANGH-CPDVIAYHVLIKALCKACRTTEADNLFNEMVS-KGLKPSVA 650
Query: 363 HYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLL-SLC 408
Y M + + + + +M ED N + I + SL+ LC
Sbjct: 651 TYNSMIDGWCKEGEIDRGLSCIVRMYEDEKNP--DVITYTSLIHGLC 695
>gi|357447703|ref|XP_003594127.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|124365519|gb|ABN09753.1| Tetratricopeptide-like helical [Medicago truncatula]
gi|355483175|gb|AES64378.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 727
Score = 249 bits (636), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 147/448 (32%), Positives = 228/448 (50%), Gaps = 13/448 (2%)
Query: 23 WTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNG 82
W + +L A G D +F I + +I Y + + Y M++ G
Sbjct: 254 WNV-MLNGYAKTGLVDEARELFDGICDKDVISWGTMIDGYIQKGRLREALEIYRAMLQTG 312
Query: 83 FMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCAR 142
PN V+L +C + + G HG +K G D + ++I Y G MD A
Sbjct: 313 HGPNEVMIVNLVSACGRGTAIVDGWQLHGTVVKRGFDCYNFIQTTIIYFYAACGMMDLAC 372
Query: 143 NMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGC 202
F L SWN++ +G +++G M A + FD M R+V SW+ MISGY++S +P
Sbjct: 373 LQFEVGVKDHLESWNALTAGFIKNGMMDHALKTFDKMHVRDVFSWSTMISGYAQSEHPKM 432
Query: 203 SLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALID 262
+L+LF +M+ G + N+ TM SV +A EG+ H Y S+ N L ALID
Sbjct: 433 ALELFHKMLAGGIKPNEVTMVSVFSAIATLGTLQEGKLAHEYMRSESIPFNDNLRAALID 492
Query: 263 LYSKCQKVEVAQRVFDSMADR--NLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGS 320
+Y+KC + A + F+ + D ++ WNA+I G HG +++F+ +
Sbjct: 493 MYAKCGSINSALQFFNQIRDEVSSVSPWNAIICGLASHGHASMCLEVFSDMQR-----FH 547
Query: 321 ISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEA 380
I P+ ITFIGV+ AC A L+ G++ F+ M Y ++P+ HY CM ++ A L EEA
Sbjct: 548 IKPNPITFIGVLSACCHAGLVESGKRIFKTMKSAYNVEPDIKHYGCMIDILGRAGLLEEA 607
Query: 381 EEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLN 440
EE++R MP M + ++W +LL+ CR G V + ER A++ + P L N
Sbjct: 608 EEMIRSMP-----MEADIVIWGTLLAACRTHGNVNIGERAAENLARLAPSHGGGKVLLSN 662
Query: 441 VYAVAGQWEDVARVRELMKKRRMGRMPG 468
+YA AG+WE+V+ VR +M+ + M R PG
Sbjct: 663 IYANAGKWEEVSFVRSVMQGQTMDREPG 690
Score = 147 bits (370), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 89/282 (31%), Positives = 141/282 (50%), Gaps = 26/282 (9%)
Query: 89 TFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQM 148
VS SC+ + +G H L K G+ F + NSLINMY G + A+ +F
Sbjct: 55 ALVSALKSCSSLSFISQGRQIHSLIFKLGLHFNTFIQNSLINMYAKCGDIKNAQLLFDGF 114
Query: 149 SPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFR 208
+ D +S N +VSG+VR+G + A +LFD+MP + VS+ MI G+ ++G +L++F+
Sbjct: 115 ATLDSVSCNIMVSGYVRNGQIDNARKLFDVMPNKGCVSYTTMIMGFVQNGFFREALEVFK 174
Query: 209 EMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQ 268
+M G ND T+ +V++AC R VHG V+ + +I+ T L+ Y C
Sbjct: 175 DMRSCGVVPNDLTLVNVISACSHLGEVLNCRMVHGLVVKMFVVGLVIVSTNLMHAYCLCS 234
Query: 269 KVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVN------GTVAGGSIS 322
V A+R+FD M +RNLV WN M+ G+ G +E +LF + + GT+ G I
Sbjct: 235 GVREARRLFDEMPERNLVTWNVMLNGYAKTGLVDEARELFDGICDKDVISWGTMIDGYIQ 294
Query: 323 --------------------PDEITFIGVICACVRAELLTEG 344
P+E+ + ++ AC R + +G
Sbjct: 295 KGRLREALEIYRAMLQTGHGPNEVMIVNLVSACGRGTAIVDG 336
Score = 139 bits (350), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 102/407 (25%), Positives = 182/407 (44%), Gaps = 68/407 (16%)
Query: 1 MKQLLQIQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIK 60
+ Q QI + + GL FN +F +L+ A G L+F + N ++
Sbjct: 69 ISQGRQIHSLIFKLGLHFN-TFIQNSLINMYAKCGDIKNAQLLFDGFATLDSVSCNIMVS 127
Query: 61 AYSNS-----------CVPDQGVVFYLQMI----KNGF----------------MPNSYT 89
Y + +P++G V Y MI +NGF +PN T
Sbjct: 128 GYVRNGQIDNARKLFDVMPNKGCVSYTTMIMGFVQNGFFREALEVFKDMRSCGVVPNDLT 187
Query: 90 FVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMS 149
V++ +C+ G V M HGL +K V + V +L++ Y + AR +F +M
Sbjct: 188 LVNVISACSHLGEVLNCRMVHGLVVKMFVVGLVIVSTNLMHAYCLCSGVREARRLFDEMP 247
Query: 150 PRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFRE 209
R+L++WN +++G+ ++G + A ELFD + +++V+SW MI GY + G +L+++R
Sbjct: 248 ERNLVTWNVMLNGYAKTGLVDEARELFDGICDKDVISWGTMIDGYIQKGRLREALEIYRA 307
Query: 210 MMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQK 269
M+++G N+ + ++++ACGR +G +HG V+ + T +I Y+ C
Sbjct: 308 MLQTGHGPNEVMIVNLVSACGRGTAIVDGWQLHGTVVKRGFDCYNFIQTTIIYFYAACGM 367
Query: 270 VEV-------------------------------AQRVFDSMADRNLVCWNAMILGHCIH 298
+++ A + FD M R++ W+ MI G+
Sbjct: 368 MDLACLQFEVGVKDHLESWNALTAGFIKNGMMDHALKTFDKMHVRDVFSWSTMISGYAQS 427
Query: 299 GKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGR 345
P+ ++LF ++ G I P+E+T + V A L EG+
Sbjct: 428 EHPKMALELFHKML-----AGGIKPNEVTMVSVFSAIATLGTLQEGK 469
Score = 65.1 bits (157), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 48/202 (23%), Positives = 85/202 (42%), Gaps = 37/202 (18%)
Query: 221 TMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSM 280
+ S L +C + ++GR +H + L N + +LI++Y+KC ++ AQ +FD
Sbjct: 55 ALVSALKSCSSLSFISQGRQIHSLIFKLGLHFNTFIQNSLINMYAKCGDIKNAQLLFDGF 114
Query: 281 ADRNLVCWNAMILGHCIHGKPEEGIKLF-----------TALVNGTVAGG---------- 319
A + V N M+ G+ +G+ + KLF T ++ G V G
Sbjct: 115 ATLDSVSCNIMVSGYVRNGQIDNARKLFDVMPNKGCVSYTTMIMGFVQNGFFREALEVFK 174
Query: 320 -----SISPDEITFIGVICACVR-AELL----TEGRKYFRQMIDFYKIKPNFAHYWCMAN 369
+ P+++T + VI AC E+L G ++ + N H +C+ +
Sbjct: 175 DMRSCGVVPNDLTLVNVISACSHLGEVLNCRMVHGLVVKMFVVGLVIVSTNLMHAYCLCS 234
Query: 370 LYAGAELTEEAEEILRKMPEDN 391
EA + +MPE N
Sbjct: 235 ------GVREARRLFDEMPERN 250
>gi|242047514|ref|XP_002461503.1| hypothetical protein SORBIDRAFT_02g003670 [Sorghum bicolor]
gi|241924880|gb|EER98024.1| hypothetical protein SORBIDRAFT_02g003670 [Sorghum bicolor]
Length = 786
Score = 249 bits (635), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 145/459 (31%), Positives = 242/459 (52%), Gaps = 26/459 (5%)
Query: 36 SPDYTVLVFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFV--SL 93
S Y + +F+C + F N +++ + P +F +N P+S+TF+ SL
Sbjct: 76 SHSYPLSLFRCASCASAFASNHLLRVLPH---PLPLRLFPRLPRRN---PHSFTFLLASL 129
Query: 94 FGSCAKTGCVE-------RGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFV 146
V G H LA+K G +L V N+LI+ YG G + R +F
Sbjct: 130 SNHLDADPAVAVSIASRLMGAHVHALAVKAGAAGDLYVRNALIHFYGVCGDVAAMRKVFD 189
Query: 147 QMS-PRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLK 205
++ RD+++WN++++G+VR+G + A E+FD MP R+ VSW+ ++ GY K G +L
Sbjct: 190 ELPLVRDVVTWNAVLAGYVRAGMVGVAREVFDGMPMRDEVSWSTVVGGYVKEGELEVALG 249
Query: 206 LFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYS 265
+F+ M+ G + N+ + + L+A + +G+ VH R + ++ L AL+D+YS
Sbjct: 250 VFKNMVVQGVKANEAAIVTALSAAAQLGLLEQGKFVHEVIKRAGVAMSMNLGAALVDMYS 309
Query: 266 KCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDE 325
KC V A+ VFD+M R++ WN+MI G HG + ++LF V+ P
Sbjct: 310 KCGSVAAAKEVFDAMPWRDVFAWNSMICGLATHGLGHDAVQLFEKFVS-----EGFCPTN 364
Query: 326 ITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILR 385
ITF+GV+ AC R L+ EGR YF+ M + Y I+ HY CM +L + A L +EA E++
Sbjct: 365 ITFVGVLNACSRTGLVDEGRWYFKLMAEKYGIESEMEHYGCMVDLLSRAGLVQEAIELIE 424
Query: 386 KMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVA 445
M ++ + ++W ++LS C+ G V + + +++DP Y L ++YA A
Sbjct: 425 GM-----HIPPDPVLWGTVLSACKRHGLVDLGITVGNKLIELDPAHDGYYVLLASIYAKA 479
Query: 446 GQWEDVARVRELMKKRRMGRMPGCRLVDLKEVVEKLKVG 484
+W++V +VR+LM R + G L++ +V K VG
Sbjct: 480 KKWDEVRKVRKLMSNRGTSKSAGWSLMEAHGIVHKFLVG 518
Score = 49.7 bits (117), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 45/212 (21%), Positives = 95/212 (44%), Gaps = 11/212 (5%)
Query: 43 VFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGC 102
VF + F N++I + + V + + + GF P + TFV + +C++TG
Sbjct: 320 VFDAMPWRDVFAWNSMICGLATHGLGHDAVQLFEKFVSEGFCPTNITFVGVLNACSRTGL 379
Query: 103 VERGGMCHGL-ALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMS-PRDLISWNSIV 160
V+ G L A K G++ E+ ++++ G + A + M P D + W +++
Sbjct: 380 VDEGRWYFKLMAEKYGIESEMEHYGCMVDLLSRAGLVQEAIELIEGMHIPPDPVLWGTVL 439
Query: 161 SGHVRSG----DMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFR 216
S R G ++ ++L ++ P + + ++++ ++ R++M + R
Sbjct: 440 SACKRHGLVDLGITVGNKLIELDPAHD--GYYVLLASIYAKAKKWDEVRKVRKLMSN--R 495
Query: 217 GNDKTMA-SVLTACGRSARFNEGRSVHGYTVR 247
G K+ S++ A G +F G H +V+
Sbjct: 496 GTSKSAGWSLMEAHGIVHKFLVGDMDHKDSVQ 527
>gi|414871822|tpg|DAA50379.1| TPA: hypothetical protein ZEAMMB73_401482 [Zea mays]
Length = 522
Score = 249 bits (635), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 152/488 (31%), Positives = 241/488 (49%), Gaps = 21/488 (4%)
Query: 1 MKQLLQIQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVL----VFKCINNPGTFCVN 56
M L Q+ A L+ SGL + I + A P VL + + P +F N
Sbjct: 47 MAHLRQLHAALVKSGLAKD----PIAASRAVAFCAGPGRDVLYAERLVRHHPRPNSFMWN 102
Query: 57 AVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKN 116
VI+A S+ PD V ++ M+ + P+ +F SL + A+ G G HG+ALK
Sbjct: 103 TVIRALSDGARPDAAVALFVDMLSSPTPPDRRSFPSLLAAYARLGRAGDGEALHGMALKL 162
Query: 117 GVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELF 176
G+ + V N+ I MY G D A +F Q D+++ NS++ R+G + A +F
Sbjct: 163 GLAGDAYVRNATIAMYASCGRADEALALFGQCPELDVVACNSVIVALARAGRVDEARSVF 222
Query: 177 DIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFN 236
D MPER V +W+ M+S Y+++ +L LF M G N + SVL C
Sbjct: 223 DAMPERTVATWSAMVSAYARAARCSEALALFSAMQADGMEPNANVLVSVLGCCASLGALV 282
Query: 237 EGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLV---CWNAMIL 293
+G VH Y R + N ++ TAL+D+Y KC V+ A++VFD+ + L WN+M+
Sbjct: 283 QGAWVHEYIDRHGVAMNALVVTALVDMYCKCGSVDDARQVFDAARSQGLAKLSSWNSMMQ 342
Query: 294 GHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMID 353
G +HG+ E + LF+ L + +SPD +TFI V+ A + + E + F M
Sbjct: 343 GLAVHGQWREAVALFSELKS-----YGLSPDNVTFIAVLTAYGHSGMPDEAQAAFASMSS 397
Query: 354 FYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGA 413
+ ++P HY C+ + A A EAE+ +R MP M+ ++ +W +LLS CR G
Sbjct: 398 EHGVEPGIEHYGCLVDALARAGRLREAEDAIRAMP-----MAPDAAIWGALLSGCRLHGD 452
Query: 414 VAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVD 473
+ R A+ V DP+D Y +V A G A +R M++ +G++PG +++
Sbjct: 453 AELGARAAREAVRCDPRDSGAYVLAASVLARGGDPGRGAGIRGRMREAGVGKVPGSSMIE 512
Query: 474 LKEVVEKL 481
+ VV +
Sbjct: 513 VNGVVHEF 520
>gi|147780607|emb|CAN69113.1| hypothetical protein VITISV_031840 [Vitis vinifera]
Length = 714
Score = 249 bits (635), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 131/405 (32%), Positives = 212/405 (52%), Gaps = 41/405 (10%)
Query: 80 KNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMD 139
++G PN T +S+ +CA G ++ G HG+ +K G+ + V+NSLINMYG G +D
Sbjct: 234 ESGRQPNEVTLLSVVSACAXMGALDEGKSLHGVVVKLGMSGKAKVVNSLINMYGKLGFLD 293
Query: 140 CARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGN 199
A +F +M R L+SWNS+V H +GY++ G
Sbjct: 294 AASQLFEEMPVRSLVSWNSMVVIHNH--------------------------NGYAEKG- 326
Query: 200 PGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTA 259
+ LF M ++G + TM ++L AC + + S+H Y R +II+ TA
Sbjct: 327 ----MDLFNLMKRAGINPDQATMVALLRACTDTGLGRQAESIHAYIHRCGFNADIIIATA 382
Query: 260 LIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGG 319
L++LY+K ++ ++ +F+ + DR+ + W AM+ G+ +H E IKLF +V V
Sbjct: 383 LLNLYAKLGRLNASEDIFEEIKDRDTIAWTAMLAGYAVHACGREAIKLFDLMVKEGV--- 439
Query: 320 SISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEE 379
D +TF ++ AC + L+ EG+KYF M + Y+++P HY CM +L + E+
Sbjct: 440 --EVDHVTFTHLLSACSHSGLVEEGKKYFEIMSEVYRVEPRLDHYSCMVDLLGRSGRLED 497
Query: 380 AEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLL 439
A E+++ MP M S +W +LL CR G V + + +A+ + +DP D Y L
Sbjct: 498 AYELIKSMP-----MEPSSGVWGALLGACRVYGNVELGKEVAEQLLSLDPSDHRNYIMLS 552
Query: 440 NVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLKEVVEKLKVG 484
N+Y+ AG W ++VR LMK+RR+ R PGC ++ + + VG
Sbjct: 553 NIYSAAGLWRXASKVRXLMKERRLTRNPGCSFIEHGNKIHRFVVG 597
Score = 118 bits (295), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 88/309 (28%), Positives = 160/309 (51%), Gaps = 20/309 (6%)
Query: 157 NSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLF-REMMKSGF 215
+ +VS + + G A LFD MP R++VSWN ++SG S G G L F R +SG
Sbjct: 178 DRLVSMYFKLGYDEDAQRLFDEMPNRDLVSWNSLMSGLSGRGYLGACLNAFCRMRTESGR 237
Query: 216 RGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQR 275
+ N+ T+ SV++AC +EG+S+HG V+ + + +LI++Y K ++ A +
Sbjct: 238 QPNEVTLLSVVSACAXMGALDEGKSLHGVVVKLGMSGKAKVVNSLINMYGKLGFLDAASQ 297
Query: 276 VFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICAC 335
+F+ M R+LV WN+M++ H +G E+G+ LF + I+PD+ T + ++ AC
Sbjct: 298 LFEEMPVRSLVSWNSMVVIHNHNGYAEKGMDLFNLMKR-----AGINPDQATMVALLRAC 352
Query: 336 VRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMA----NLYAGAELTEEAEEILRKMPEDN 391
L GR+ + I Y + F +A NLYA +E+I ++ +D
Sbjct: 353 TDTGL---GRQ--AESIHAYIHRCGFNADIIIATALLNLYAKLGRLNASEDIFEEI-KDR 406
Query: 392 DNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDV 451
D +++ +++ + C + A+ + + + K V++D F+ LL+ + +G E+
Sbjct: 407 DTIAWTAMLAGYAVHACGRE-AIKLFDLMVKEGVEVDHVTFTH---LLSACSHSGLVEEG 462
Query: 452 ARVRELMKK 460
+ E+M +
Sbjct: 463 KKYFEIMSE 471
Score = 70.1 bits (170), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 53/261 (20%), Positives = 116/261 (44%), Gaps = 35/261 (13%)
Query: 56 NAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALK 115
N+++ ++++ ++G+ + M + G P+ T V+L +C TG + H +
Sbjct: 311 NSMVVIHNHNGYAEKGMDLFNLMKRAGINPDQATMVALLRACTDTGLGRQAESIHAYIHR 370
Query: 116 NGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHEL 175
G + ++ + +L+N+Y G ++ + ++F ++ RD I+W ++++G+ A +L
Sbjct: 371 CGFNADIIIATALLNLYAKLGRLNASEDIFEEIKDRDTIAWTAMLAGYAVHACGREAIKL 430
Query: 176 FDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARF 235
FD+ M+K G + T +L+AC S
Sbjct: 431 FDL-------------------------------MVKEGVEVDHVTFTHLLSACSHSGLV 459
Query: 236 NEGRSVHGYTVRT-SLKPNIILDTALIDLYSKCQKVEVAQRVFDSMA-DRNLVCWNAMIL 293
EG+ ++P + + ++DL + ++E A + SM + + W A+ L
Sbjct: 460 EEGKKYFEIMSEVYRVEPRLDHYSCMVDLLGRSGRLEDAYELIKSMPMEPSSGVWGAL-L 518
Query: 294 GHC-IHGKPEEGIKLFTALVN 313
G C ++G E G ++ L++
Sbjct: 519 GACRVYGNVELGKEVAEQLLS 539
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/170 (22%), Positives = 75/170 (44%), Gaps = 5/170 (2%)
Query: 219 DKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFD 278
D + S++ A + ++H +++ + + L+ +Y K E AQR+FD
Sbjct: 139 DSIVQSLVFAISSCTSVSYCSAIHARVIKSLNYSDGFIGDRLVSMYFKLGYDEDAQRLFD 198
Query: 279 SMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRA 338
M +R+LV WN+++ G + G+ G L T +G P+E+T + V+ AC
Sbjct: 199 EMPNRDLVSWNSLMSG--LSGRGYLGACLNAFCRMRTESGR--QPNEVTLLSVVSACAXM 254
Query: 339 ELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMP 388
L EG+ ++ + + N+Y + A ++ +MP
Sbjct: 255 GALDEGKSLHGVVVKL-GMSGKAKVVNSLINMYGKLGFLDAASQLFEEMP 303
>gi|449492963|ref|XP_004159154.1| PREDICTED: uncharacterized protein LOC101226880 [Cucumis sativus]
Length = 1725
Score = 249 bits (635), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 134/379 (35%), Positives = 208/379 (54%), Gaps = 6/379 (1%)
Query: 2 KQLLQIQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKA 61
K L QI A +I SGL N+ T L+ + G Y +L+F I NP TF N +I+A
Sbjct: 41 KHLRQIHAKIIRSGLS-NDQLLTRKLIHLYSTHGRIAYAILLFYQIQNPCTFTWNLIIRA 99
Query: 62 YSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFE 121
+ + + +Q ++ Y M+ G + +TF + +C ++ G + HG +K G +
Sbjct: 100 NTINGLSEQALMLYKNMVCQGIAADKFTFPFVIKACTNFLSIDLGKVVHGSLIKYGFSGD 159
Query: 122 LPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPE 181
+ V N+LI+ Y G A +F +M R+++SW +++SG + GD+ A +FD +P
Sbjct: 160 VFVQNNLIDFYFKCGHTRFALKVFEKMRVRNVVSWTTVISGLISCGDLQEARRIFDEIPS 219
Query: 182 RNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSV 241
+NVVSW MI+GY ++ P +L+LF+ M N+ TM S++ AC GR +
Sbjct: 220 KNVVSWTAMINGYIRNQQPEEALELFKRMQAENIFPNEYTMVSLIKACTEMGILTLGRGI 279
Query: 242 HGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKP 301
H Y ++ ++ + L TALID+YSKC ++ A VF++M ++L WN+MI +HG
Sbjct: 280 HDYAIKNCIEIGVYLGTALIDMYSKCGSIKDAIEVFETMPRKSLPTWNSMITSLGVHGLG 339
Query: 302 EEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNF 361
+E + LF+ + V PD ITFIGV+CACV + + EG YF +M Y I P
Sbjct: 340 QEALNLFSEMERVNV-----KPDAITFIGVLCACVHIKNVKEGCAYFTRMTQHYGIAPIP 394
Query: 362 AHYWCMANLYAGAELTEEA 380
HY CM LYA + +EA
Sbjct: 395 EHYECMTELYARSNNLDEA 413
Score = 225 bits (574), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 127/400 (31%), Positives = 208/400 (52%), Gaps = 42/400 (10%)
Query: 86 NSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMF 145
+S VS+ +C++ HG +K G D + V N+L++ Y
Sbjct: 1250 DSVVMVSVLSACSRVSGKGITEGVHGFVVKKGFDGSIGVGNTLMDAYA------------ 1297
Query: 146 VQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLK 205
+ G + ++FD M E++ +SWN MI+ Y++SG G +L+
Sbjct: 1298 -------------------KCGQPLVSKKVFDWMEEKDDISWNSMIAVYAQSGLSGEALE 1338
Query: 206 LFREMMKS-GFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLY 264
+F M++ G R N T+++VL AC + G+ +H ++ L+ N+ + T++ID+Y
Sbjct: 1339 VFHGMVRHVGVRYNAVTLSAVLLACAHAGALRAGKCIHDQVIKMDLEYNVCVGTSIIDMY 1398
Query: 265 SKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPD 324
KC +VE+A++ FD M ++N+ W AM+ G+ +HG+ +E + +F +V V P+
Sbjct: 1399 CKCGRVEMAKKTFDRMKEKNVKSWTAMVAGYGMHGRAKEALDIFYKMVRAGV-----KPN 1453
Query: 325 EITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEIL 384
ITF+ V+ AC A L+ EG +F M Y I+P HY CM +L+ A EA ++
Sbjct: 1454 YITFVSVLAACSHAGLVEEGWHWFNAMKHKYDIEPGIEHYGCMVDLFGRAGCLNEAYNLI 1513
Query: 385 RKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAV 444
++M M + ++W SLL CR V + E A+ ++DP + Y L N+YA
Sbjct: 1514 KRM-----KMKPDFVVWGSLLGACRIHKNVDLGEIAAQKLFELDPDNCGYYVLLSNLYAD 1568
Query: 445 AGQWEDVARVRELMKKRRMGRMPGCRLVDLKEVVEKLKVG 484
AG+W DV R+R LMK R++ + PG LV+LK V VG
Sbjct: 1569 AGRWADVERMRMLMKNRQLVKPPGFSLVELKGRVHVFLVG 1608
Score = 111 bits (277), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 88/356 (24%), Positives = 153/356 (42%), Gaps = 44/356 (12%)
Query: 44 FKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCV 103
+K ++ N+VI + + + + + K G +P +F SC+ +
Sbjct: 1099 YKYVDKSNVHSWNSVIADLARGGDSVEALRAFSSLRKLGLIPTRSSFPCTIKSCSALCDL 1158
Query: 104 ERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGH 163
G M H A G + +L V ++LI+MY
Sbjct: 1159 VSGRMSHQQAFVFGFETDLFVSSALIDMYS------------------------------ 1188
Query: 164 VRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDK--- 220
+ G + A LFD +P RNVVSW MI+GY ++ +L LF++ ++ D
Sbjct: 1189 -KCGQLKDARALFDEIPLRNVVSWTSMITGYVQNEQADNALLLFKDFLEEETEVEDGNNV 1247
Query: 221 -----TMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQR 275
M SVL+AC R + VHG+ V+ +I + L+D Y+KC + V+++
Sbjct: 1248 PLDSVVMVSVLSACSRVSGKGITEGVHGFVVKKGFDGSIGVGNTLMDAYAKCGQPLVSKK 1307
Query: 276 VFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICAC 335
VFD M +++ + WN+MI + G E +++F +G V + + +T V+ AC
Sbjct: 1308 VFDWMEEKDDISWNSMIAVYAQSGLSGEALEVF----HGMVRHVGVRYNAVTLSAVLLAC 1363
Query: 336 VRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDN 391
A L G+ Q+I ++ N + ++Y E A++ +M E N
Sbjct: 1364 AHAGALRAGKCIHDQVIKM-DLEYNVCVGTSIIDMYCKCGRVEMAKKTFDRMKEKN 1418
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 62/283 (21%), Positives = 120/283 (42%), Gaps = 36/283 (12%)
Query: 26 NLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKN-GFM 84
L+ A G P + VF + N++I Y+ S + + + + M+++ G
Sbjct: 1291 TLMDAYAKCGQPLVSKKVFDWMEEKDDISWNSMIAVYAQSGLSGEALEVFHGMVRHVGVR 1350
Query: 85 PNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNM 144
N+ T ++ +CA G + G H +K +++ + V S+I+MY G ++ A+
Sbjct: 1351 YNAVTLSAVLLACAHAGALRAGKCIHDQVIKMDLEYNVCVGTSIIDMYCKCGRVEMAKKT 1410
Query: 145 FVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSL 204
F +M +++ SW + M++GY G +L
Sbjct: 1411 FDRMKEKNVKSWTA-------------------------------MVAGYGMHGRAKEAL 1439
Query: 205 KLFREMMKSGFRGNDKTMASVLTACGRSARFNEG-RSVHGYTVRTSLKPNIILDTALIDL 263
+F +M+++G + N T SVL AC + EG + + ++P I ++DL
Sbjct: 1440 DIFYKMVRAGVKPNYITFVSVLAACSHAGLVEEGWHWFNAMKHKYDIEPGIEHYGCMVDL 1499
Query: 264 YSKCQKVEVAQRVFDSMADR-NLVCWNAMILGHC-IHGKPEEG 304
+ + + A + M + + V W ++ LG C IH + G
Sbjct: 1500 FGRAGCLNEAYNLIKRMKMKPDFVVWGSL-LGACRIHKNVDLG 1541
Score = 46.2 bits (108), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 54/120 (45%), Gaps = 5/120 (4%)
Query: 235 FNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILG 294
F R +H +R+ L + +L LI LYS ++ A +F + + WN +I
Sbjct: 40 FKHLRQIHAKIIRSGLSNDQLLTRKLIHLYSTHGRIAYAILLFYQIQNPCTFTWNLIIRA 99
Query: 295 HCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDF 354
+ I+G E+ + L+ +V +A D+ TF VI AC + G+ +I +
Sbjct: 100 NTINGLSEQALMLYKNMVCQGIAA-----DKFTFPFVIKACTNFLSIDLGKVVHGSLIKY 154
>gi|356574121|ref|XP_003555200.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g08305-like [Glycine max]
Length = 548
Score = 248 bits (634), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 146/482 (30%), Positives = 259/482 (53%), Gaps = 14/482 (2%)
Query: 3 QLLQIQAHLITSGLFFNNSFWT-INLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKA 61
+L Q+ A +I+ GL ++ F + I ++ G +Y+ VF +++P F N +I+
Sbjct: 29 ELKQLHAVVISCGLSQDDPFISKILCFSALSNSGDINYSYRVFSQLSSPTIFSWNTIIRG 88
Query: 62 YSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFE 121
YSNS P Q + +L+M++ G P+ T+ L + A+ E G H +K G + +
Sbjct: 89 YSNSKNPIQSLSIFLKMLRLGVAPDYLTYPFLVKASARLLNQETGVSVHAHIIKTGHESD 148
Query: 122 LPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPE 181
+ NSLI+MY G A+ +F + ++++SWNS++ G+ + G+M A + F+ M E
Sbjct: 149 RFIQNSLIHMYAACGNSMWAQKVFDSIQQKNVVSWNSMLDGYAKCGEMVMAQKAFESMSE 208
Query: 182 RNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSV 241
++V SW+ +I GY K+G ++ +F +M +G + N+ TM SV AC +GR +
Sbjct: 209 KDVRSWSSLIDGYVKAGEYSEAMAIFEKMQSAGPKANEVTMVSVSCACAHMGALEKGRMI 268
Query: 242 HGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFD--SMADRNLVCWNAMILGHCIHG 299
+ Y V L ++L T+L+D+Y+KC +E A +F S + +++ WNA+I G HG
Sbjct: 269 YKYIVDNGLPLTLVLQTSLVDMYAKCGAIEEALLIFRRVSKSQTDVLIWNAVIGGLATHG 328
Query: 300 KPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKP 359
EE +KLF + + G I PDE+T++ ++ AC L+ E +F + + + P
Sbjct: 329 LVEESLKLFKEM---QIVG--ICPDEVTYLCLLAACAHGGLVKEAW-FFFESLSKCGMTP 382
Query: 360 NFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVER 419
HY CM ++ A A A + + +MP + + M +LLS C +A+ E
Sbjct: 383 TSEHYACMVDVLARAGQLTTAYQFICQMPTEP-----TASMLGALLSGCINHRNLALAEI 437
Query: 420 LAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLKEVVE 479
+ + ++++P RY L N+YAV +W+D +RE M++R + + PG V++ V+
Sbjct: 438 VGRKLIELEPNHDGRYIGLSNMYAVDKRWDDARSMREAMERRGVKKSPGFSFVEISGVLH 497
Query: 480 KL 481
+
Sbjct: 498 RF 499
>gi|357440933|ref|XP_003590744.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355479792|gb|AES60995.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 795
Score = 248 bits (634), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 148/436 (33%), Positives = 228/436 (52%), Gaps = 26/436 (5%)
Query: 56 NAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGM------C 109
NA+I Y + ++ + +M G + YT+ SL +C C E+ GM
Sbjct: 252 NAMISGYVRRGLYEEAFDTFRRMHSMGIQEDEYTYTSLISACG--SCNEKMGMFNCGRQV 309
Query: 110 HGLALKNGVD----FELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVR 165
HG L+ V+ F L V N+LI Y + M AR +F +M RD+ISWN+++SG+V
Sbjct: 310 HGYILRTVVEPSHHFVLSVNNALITFYTKYDRMIEARRVFDKMPVRDIISWNAVLSGYVN 369
Query: 166 SGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASV 225
+ + A+ +F MPERNV++W +MISG +++G LKLF +M G D A
Sbjct: 370 AQRIEEANSIFSEMPERNVLTWTVMISGLAQNGFGEEGLKLFNQMKSEGLEPCDYAFAGA 429
Query: 226 LTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNL 285
+TAC + G+ +H +R + ALI +YS+C VE A+ VF +M +
Sbjct: 430 ITACSVLGSLDNGQQIHSQVIRLGHDSGLSAGNALITMYSRCGVVESAESVFLTMPYVDS 489
Query: 286 VCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGR 345
V WNAMI HG + I+LF ++ I PD ITF+ ++ AC A L+ EGR
Sbjct: 490 VSWNAMIAALAQHGHGVKAIELFEQMMK-----EDILPDRITFLTILTACNHAGLIKEGR 544
Query: 346 KYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFE--SIMWVS 403
YF M Y I P HY + +L A + +A+ +++ MP FE + +W +
Sbjct: 545 HYFDTMCTRYGITPGEDHYARLIDLLCRAGMFLKAQSVIKSMP-------FEAGAPIWEA 597
Query: 404 LLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRM 463
LL+ CR G + + + A +++ P Y L N+YA GQW++VARVR LM++R +
Sbjct: 598 LLAGCRIHGNMELGIQAADRLLELIPGQDGTYIILSNMYAALGQWDEVARVRLLMRERGV 657
Query: 464 GRMPGCRLVDLKEVVE 479
+ PGC V+++ +V
Sbjct: 658 KKEPGCSWVEVENMVH 673
Score = 154 bits (389), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 132/480 (27%), Positives = 222/480 (46%), Gaps = 71/480 (14%)
Query: 52 TFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERG-GMCH 110
T NA+I AYS+ + ++QM + GF+P+ +TF S+ + + ER M H
Sbjct: 104 TVSYNAMITAYSHGNDGHAALNLFVQMKRYGFLPDPFTFSSVLSALSLIADEERHCQMLH 163
Query: 111 GLALKNGVDFELPVMNSLINMYGCFGA---------MDCARNMFVQMSPRDLI---SWNS 158
+K G V N+L++ Y C + M AR +F + +P++ I SW +
Sbjct: 164 CEVIKLGTLLIPSVTNALLSCYVCCASSPLVKSSQLMASARKVFDE-TPKNQIYEPSWTT 222
Query: 159 IVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGN 218
+++G+VR+ D+ AA EL D + V+WN MISGY + G + FR M G + +
Sbjct: 223 MIAGYVRNDDLVAARELLDGLTYPIDVAWNAMISGYVRRGLYEEAFDTFRRMHSMGIQED 282
Query: 219 DKTMASVLTACG----RSARFNEGRSVHGYTVRTSLKPN----IILDTALIDLYSKCQKV 270
+ T S+++ACG + FN GR VHGY +RT ++P+ + ++ ALI Y+K ++
Sbjct: 283 EYTYTSLISACGSCNEKMGMFNCGRQVHGYILRTVVEPSHHFVLSVNNALITFYTKYDRM 342
Query: 271 EVAQRVFDSMADRNLVCWNAMILGHCIHGK-----------PEEGIKLFTALVNGTVAGG 319
A+RVFD M R+++ WNA++ G+ + PE + +T +++G G
Sbjct: 343 IEARRVFDKMPVRDIISWNAVLSGYVNAQRIEEANSIFSEMPERNVLTWTVMISGLAQNG 402
Query: 320 ---------------SISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHY 364
+ P + F G I AC L G++ Q+I +
Sbjct: 403 FGEEGLKLFNQMKSEGLEPCDYAFAGAITACSVLGSLDNGQQIHSQVIRLGH-DSGLSAG 461
Query: 365 WCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQG----AVAMVERL 420
+ +Y+ + E AE + MP +S+ W ++++ G A+ + E++
Sbjct: 462 NALITMYSRCGVVESAESVFLTMP------YVDSVSWNAMIAALAQHGHGVKAIELFEQM 515
Query: 421 AKSFVDMDPQDFSRYQFLLNVYAV--AGQWEDVARVRELMKKRRMGRMPG----CRLVDL 474
K D+ P R FL + A AG ++ + M R G PG RL+DL
Sbjct: 516 MKE--DILPD---RITFLTILTACNHAGLIKEGRHYFDTMCT-RYGITPGEDHYARLIDL 569
Score = 81.6 bits (200), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 78/298 (26%), Positives = 128/298 (42%), Gaps = 60/298 (20%)
Query: 87 SYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFV 146
+Y +++ + T + R H L +G ++N LIN+Y + AR +F
Sbjct: 7 AYRYLTQLNHVSTTQIIARA--VHAHILTSGFKPNTFILNRLINIYCKSSNITYARKLFD 64
Query: 147 QMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPE--RNVVSWNIMISGYSKSGNPGCSL 204
++ D+++ +++S + SG++ A +LF+ P R+ VS+N MI+ YS + +L
Sbjct: 65 KIPKPDIVARTTLLSAYSSSGNVKLAQQLFNATPLTIRDTVSYNAMITAYSHGNDGHAAL 124
Query: 205 KLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRS---VHGYTVR--TSLKPNIILDTA 259
LF +M + GF + T +SVL+A A +E R +H ++ T L P++ A
Sbjct: 125 NLFVQMKRYGFLPDPFTFSSVLSALSLIA--DEERHCQMLHCEVIKLGTLLIPSVT--NA 180
Query: 260 LIDLYSKC---------QKVEVAQRVFDS------------------------MADRNL- 285
L+ Y C Q + A++VFD +A R L
Sbjct: 181 LLSCYVCCASSPLVKSSQLMASARKVFDETPKNQIYEPSWTTMIAGYVRNDDLVAARELL 240
Query: 286 --------VCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICAC 335
V WNAMI G+ G EE F + I DE T+ +I AC
Sbjct: 241 DGLTYPIDVAWNAMISGYVRRGLYEEAFDTFRRM-----HSMGIQEDEYTYTSLISAC 293
>gi|297733949|emb|CBI15196.3| unnamed protein product [Vitis vinifera]
Length = 467
Score = 248 bits (634), Expect = 5e-63, Method: Compositional matrix adjust.
Identities = 150/460 (32%), Positives = 237/460 (51%), Gaps = 21/460 (4%)
Query: 58 VIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNG 117
+I+ +S S P + V Y +M++ PN +T+ L G CA++ + G HG + NG
Sbjct: 1 MIRGHSQSETPHKLVELYNRMVEAEAEPNEFTYSFLIGGCARSRLLREGEQVHGRVVANG 60
Query: 118 VDFELPVMNSLINMYGCFGAMDC---ARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHE 174
+ V SL+N+Y G D AR +F ++ R+++SWNS+++G+VR GD+ A
Sbjct: 61 YCTNVFVRTSLVNLYAIAGGYDGVRKARRVFDEIVDRNIVSWNSLLAGYVRCGDVDGARR 120
Query: 175 LFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSAR 234
+FD MPERNVVSW MI+G ++ G +L LF EM ++G + + + + L+AC
Sbjct: 121 IFDEMPERNVVSWTTMIAGCAQIGRCKQALHLFHEMRRAGVKLDQVALVAALSACAELGD 180
Query: 235 FNEGRSVHGYT---VRTSLKPNII-LDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNA 290
G +H Y + +P ++ L+ +LI +Y+ C ++ A +VF M R+ + W +
Sbjct: 181 LKLGTWIHSYIDERLHAGNQPLLVSLNNSLIHMYASCGVIDKAYKVFIGMQQRSTISWTS 240
Query: 291 MILGHCIHGKPEEGIKLFTALVN-GTVAGGSISPDEITFIGVICACVRAELLTEGRKYFR 349
MI G G EE + +F + GT G PD ITFIGV+CAC A + +GR +F
Sbjct: 241 MITGFAKQGHAEEALGVFQWMQRLGTDEG---RPDGITFIGVLCACSHAGFVDQGRHFFE 297
Query: 350 QMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCR 409
M + I P HY CM +L + A +EA ++ MP M +W +LL CR
Sbjct: 298 CMNKKWGIVPRIEHYGCMVDLLSRAGFLDEAHRLIESMP-----MKPNDAVWGALLGGCR 352
Query: 410 FQGAVAMVERLAKSF-VDMDPQDFSRYQFLL-NVYAVAGQWEDVARVRELMKKRRMGRMP 467
+ +A+ +++ P + Y LL NVYA A +W+DVA VR+ M + + +
Sbjct: 353 IHKNAELASHVAQKLALELKPDQAAGYLVLLSNVYATAKRWQDVALVRQKMVEIGVRKPA 412
Query: 468 GCRLVDLKEVVEKLKVGHFWRGGMKEEVNKMME--CRQSR 505
G V + VV G W V +M+ RQ++
Sbjct: 413 GRSWVQINGVVHDFVAGD-WTHKHASSVYEMLSKITRQAK 451
>gi|449443327|ref|XP_004139431.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g38010-like [Cucumis sativus]
gi|449521082|ref|XP_004167560.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g38010-like [Cucumis sativus]
Length = 583
Score = 248 bits (633), Expect = 5e-63, Method: Compositional matrix adjust.
Identities = 160/547 (29%), Positives = 265/547 (48%), Gaps = 79/547 (14%)
Query: 6 QIQAHLITSGLFFNNSFWTINLLKHSADFGS-PDYTVLVFKCINNP-GTFCVNAVIKAYS 63
QI A L+TSGL +++ F T +++ A+F DY + N G+F N++I Y
Sbjct: 23 QIHAQLVTSGLVYDD-FVTSKVMEFFANFVEYGDYACDYLEQGNTRLGSFPFNSLINGYV 81
Query: 64 NSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGV----- 118
P V Y +M+++GF+P+ +TF L +C+ G HG+ +K G+
Sbjct: 82 GGEFPQMAVSVYRRMVRDGFVPDMFTFPVLLKACSNFSGSREGRQVHGVVVKLGLLADHY 141
Query: 119 -------------DF-------------ELPVMNSLINMYGCFGAMDCARNMFVQMSPR- 151
DF ++ NSLI+ + G D A ++F +M
Sbjct: 142 VQNSLIRCYGACGDFSCAGKVFDEMLVRDVVSWNSLISGFMKAGHFDEAISVFFRMDVEP 201
Query: 152 ----------------------------------DLISWNSIVSGHVRSGDMSAAHELFD 177
+L+ N+++ +V++G A +FD
Sbjct: 202 SMTTLVSVLAACARNGDLCTGKGIHGVIERRFKVNLVLGNAMLDMYVKNGCFYEAKNIFD 261
Query: 178 IMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNE 237
+P R++VSW IMI+G +S +P SL+LF M G + + SVL+AC +
Sbjct: 262 ELPTRDIVSWTIMITGLVQSDHPKQSLELFSMMRTLGISPDAIILTSVLSACASLGTLDF 321
Query: 238 GRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCI 297
G VH Y + +K +I + TA++D+Y+KC +E+A ++F SM+ RN WNA++ G +
Sbjct: 322 GTWVHEYINQRGIKWDIHIGTAIVDMYAKCGCIEMALKIFYSMSQRNTFTWNALLCGLAM 381
Query: 298 HGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKI 357
HG E + LF ++ ++G + P+EITF+ ++ AC L+ EGRKYF M Y +
Sbjct: 382 HGLVHEALNLFEVMI---ISG--VKPNEITFLAILTACCHCGLVDEGRKYFDNMSKLYNL 436
Query: 358 KPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMV 417
P HY CM +L+ A L EEA E+ R MP M + ++W LL+ C G + +
Sbjct: 437 LPKLEHYGCMIDLFCRAGLLEEAVELARTMP-----MKPDVLIWGLLLNACTTVGNIELS 491
Query: 418 ERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLKEV 477
R+ +++D D + L N+ A+ +W +V R+R LMK R + + PG ++++
Sbjct: 492 HRIQDYILELDHDDSGVFVLLSNISAINQRWSNVTRLRRLMKDRGVRKAPGSSVIEVDGK 551
Query: 478 VEKLKVG 484
+ VG
Sbjct: 552 AHEFVVG 558
Score = 40.4 bits (93), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 53/240 (22%), Positives = 98/240 (40%), Gaps = 29/240 (12%)
Query: 32 ADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFV 91
A G + + +F ++ TF NA++ + + + + + MI +G PN TF+
Sbjct: 349 AKCGCIEMALKIFYSMSQRNTFTWNALLCGLAMHGLVHEALNLFEVMIISGVKPNEITFL 408
Query: 92 SLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSL--INMYGCF-----------GAM 138
++ +C G V+ G + D + N L + YGC A+
Sbjct: 409 AILTACCHCGLVDEG--------RKYFDNMSKLYNLLPKLEHYGCMIDLFCRAGLLEEAV 460
Query: 139 DCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPE--RNVVSWNIMISGYSK 196
+ AR M M P D++ W +++ G++ +H + D + E + +++S S
Sbjct: 461 ELARTM--PMKP-DVLIWGLLLNACTTVGNIELSHRIQDYILELDHDDSGVFVLLSNISA 517
Query: 197 SGNPGCSLKLFREMMKSGFRGNDKTM-ASVLTACGRSARFNEGRSVHGYTVRTSLKPNII 255
++ R +MK RG K +SV+ G++ F G H T N+I
Sbjct: 518 INQRWSNVTRLRRLMKD--RGVRKAPGSSVIEVDGKAHEFVVGDISHLQTEEIYKVLNLI 575
>gi|359497788|ref|XP_002273247.2| PREDICTED: pentatricopeptide repeat-containing protein
At2g13600-like [Vitis vinifera]
Length = 580
Score = 248 bits (633), Expect = 5e-63, Method: Compositional matrix adjust.
Identities = 148/505 (29%), Positives = 253/505 (50%), Gaps = 46/505 (9%)
Query: 7 IQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSNSC 66
+ +H I + L F +F L+ + S VF + T N +I AYS S
Sbjct: 36 LHSHFIKTALIFT-TFLANRLIDFYSKCDSIQSAHKVFHVLPVKNTHSWNIIISAYSRSG 94
Query: 67 V-----------PDQGVVFYLQMIK----NGFMPNS------------------YTFVSL 93
+ P +V Y +I +GF S +T VSL
Sbjct: 95 LFNEAHNLLDQMPKPNLVSYNSLISGLGHHGFRKESLNVFKTMLKQCSNVLFDEFTLVSL 154
Query: 94 FGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDL 153
GSCA G E HG A+ G++ + + N+LI+ YG G D + ++F +M RD+
Sbjct: 155 VGSCASLGAPELLRQVHGAAIIIGLNSNIIIGNALIDAYGKCGEPDISFSIFSRMPERDV 214
Query: 154 ISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKS 213
+SW S+V+ + ++ + AH LF M E+N VSW +I+G++++G +L LF +M +
Sbjct: 215 VSWTSMVAAYAQASRLEDAHWLFSQMQEKNTVSWTALIAGFAQNGRGDEALHLFEQMREE 274
Query: 214 GFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKP---NIILDTALIDLYSKCQKV 270
G + T ASVL+AC A G+ +HG+ +R++ NI + ALID+Y KC ++
Sbjct: 275 GIPPSAFTFASVLSACADLALIARGKEIHGHIIRSTCIDYFCNIFILNALIDMYCKCGQM 334
Query: 271 EVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIG 330
A +F M ++++V WN++I G +G EE + +F ++ I P+ +TF+G
Sbjct: 335 RSATTLFKGMHEKDIVSWNSLITGFAQNGHGEESLAVFERMIE-----ADIRPNHVTFLG 389
Query: 331 VICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPED 390
++ AC L++EG + M Y + P HY M +L EEA ++++ P+
Sbjct: 390 LLSACCHTGLVSEGLRILDSMEKDYGVCPRSDHYAIMIDLLGRNNRLEEAMGLIKRAPKG 449
Query: 391 NDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWED 450
+D++ MW +LL CR G + + R A+ ++P + +RY + N+YA A +W++
Sbjct: 450 SDHVG----MWGALLGACRIHGNMDLARRAAEVLFQLEPGNAARYVMVYNIYAAASRWDE 505
Query: 451 VARVRELMKKRRMGRMPGCRLVDLK 475
+VR LM +R + + C ++++
Sbjct: 506 ARQVRRLMMERGLRKEAACSWIEVR 530
Score = 131 bits (329), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 107/415 (25%), Positives = 183/415 (44%), Gaps = 53/415 (12%)
Query: 85 PNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNM 144
P + SL C T ++ G + H +K + F + N LI+ Y ++ A +
Sbjct: 12 PAHQHYSSLISKCITTRHLKLGKLLHSHFIKTALIFTTFLANRLIDFYSKCDSIQSAHKV 71
Query: 145 FVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSL 204
F + ++ SWN I+S + RSG + AH L D MP+ N+VS+N +ISG G SL
Sbjct: 72 FHVLPVKNTHSWNIIISAYSRSGLFNEAHNLLDQMPKPNLVSYNSLISGLGHHGFRKESL 131
Query: 205 KLFREMMK--SGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALID 262
+F+ M+K S ++ T+ S++ +C R VHG + L NII+ ALID
Sbjct: 132 NVFKTMLKQCSNVLFDEFTLVSLVGSCASLGAPELLRQVHGAAIIIGLNSNIIIGNALID 191
Query: 263 LYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLF-----------TAL 311
Y KC + +++ +F M +R++V W +M+ + + E+ LF TAL
Sbjct: 192 AYGKCGEPDISFSIFSRMPERDVVSWTSMVAAYAQASRLEDAHWLFSQMQEKNTVSWTAL 251
Query: 312 VNGTVAGG---------------SISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYK 356
+ G G I P TF V+ AC L+ G++ I +
Sbjct: 252 IAGFAQNGRGDEALHLFEQMREEGIPPSAFTFASVLSACADLALIARGKE-----IHGHI 306
Query: 357 IKPNFAHYWC-------MANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCR 409
I+ Y+C + ++Y A + + M E + + W SL++
Sbjct: 307 IRSTCIDYFCNIFILNALIDMYCKCGQMRSATTLFKGMHEK------DIVSWNSLITGFA 360
Query: 410 FQG----AVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKK 460
G ++A+ ER+ ++ D+ P + + LL+ G + R+ + M+K
Sbjct: 361 QNGHGEESLAVFERMIEA--DIRPNHVT-FLGLLSACCHTGLVSEGLRILDSMEK 412
>gi|357123975|ref|XP_003563682.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g31430-like [Brachypodium distachyon]
Length = 527
Score = 248 bits (633), Expect = 5e-63, Method: Compositional matrix adjust.
Identities = 146/460 (31%), Positives = 233/460 (50%), Gaps = 12/460 (2%)
Query: 17 FFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYL 76
F+ +++ +L+ G D +F + + N +I+ Y +
Sbjct: 77 FWWDAYTASSLMDMYTLLGRADVARKLFDEMPHRALVVWNMMIRCYVRCGRYTAAIALAE 136
Query: 77 QMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGV-DFELPVMNSLINMYGCF 135
+M ++G P+ T V+ C++ G + G H A +GV F LPV N+L++MY
Sbjct: 137 EMERSGLTPDKVTLVTSVTVCSRAGDLSLGRRIH--AYMDGVFGFSLPVANALLDMYMKN 194
Query: 136 GAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYS 195
G ++ A +F QM R++ISW +VSG+ +G + A LF E++++ W MI+
Sbjct: 195 GCLEEAVKLFEQMPSRNIISWTILVSGYAFAGQLDKARVLFYQCSEKDLIMWTAMINACV 254
Query: 196 KSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNII 255
+ G +L LFREM + T+ ++LT C ++G +H + V +K + +
Sbjct: 255 QHGCFEEALSLFREMQMQRVEPDRFTIVTLLTCCANLGALDQGEWIHQFAVDRKMKVDAV 314
Query: 256 LDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGT 315
L TALID+Y+KC V+ + VF+ M R+ W ++I G +G+ ++LF +
Sbjct: 315 LGTALIDMYAKCGHVKKSMEVFEQMQGRDTTAWTSIICGLATNGQAGRALELFEDMERSK 374
Query: 316 VAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAE 375
V PD ITFIGV+ AC L+ EGRK F M D Y+I P HY C+ NL A
Sbjct: 375 V-----KPDSITFIGVLSACCHGGLVDEGRKQFHAMKDVYRIPPRIEHYSCLVNLLGRAG 429
Query: 376 LTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRY 435
L +EAE+++R + + D M ++ +LL+ C+ QG V M ERL K + Q
Sbjct: 430 LLDEAEKLIRDIQINKDAMP----LFGALLTACKAQGNVEMSERLTKRIGEQGYQIPDVN 485
Query: 436 QFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLK 475
+ NVYA A +WED RVR M + + GC L+++K
Sbjct: 486 LLMSNVYATASRWEDAIRVRSKMAHPTIKKTAGCSLIEVK 525
Score = 100 bits (249), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 77/352 (21%), Positives = 149/352 (42%), Gaps = 60/352 (17%)
Query: 75 YLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGC 134
Y + G + +S+T+ + + G H A+K G ++ +SL++MY
Sbjct: 34 YYDLRGRGLVADSFTYPFVLRAIGVLKLSVEGRKAHAAAMKTGFWWDAYTASSLMDMYTL 93
Query: 135 FGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGY 194
G D AR +F +M R L+ WN ++ +VR G +AA
Sbjct: 94 LGRADVARKLFDEMPHRALVVWNMMIRCYVRCGRYTAA---------------------- 131
Query: 195 SKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNI 254
+ L EM +SG + T+ + +T C R+ + GR +H Y + ++
Sbjct: 132 ---------IALAEEMERSGLTPDKVTLVTSVTVCSRAGDLSLGRRIHAY-MDGVFGFSL 181
Query: 255 ILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGK-----------PEE 303
+ AL+D+Y K +E A ++F+ M RN++ W ++ G+ G+ E+
Sbjct: 182 PVANALLDMYMKNGCLEEAVKLFEQMPSRNIISWTILVSGYAFAGQLDKARVLFYQCSEK 241
Query: 304 GIKLFTALVNGTVAGG---------------SISPDEITFIGVICACVRAELLTEGRKYF 348
+ ++TA++N V G + PD T + ++ C L +G ++
Sbjct: 242 DLIMWTAMINACVQHGCFEEALSLFREMQMQRVEPDRFTIVTLLTCCANLGALDQG-EWI 300
Query: 349 RQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIM 400
Q K+K + + ++YA +++ E+ +M + D ++ SI+
Sbjct: 301 HQFAVDRKMKVDAVLGTALIDMYAKCGHVKKSMEVFEQM-QGRDTTAWTSII 351
Score = 79.0 bits (193), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 68/284 (23%), Positives = 124/284 (43%), Gaps = 20/284 (7%)
Query: 179 MPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEG 238
MP R+ N++I ++ G+ + ++ ++ G + T VL A G EG
Sbjct: 9 MPLRDC---NLLIRTLARRGSFARVMAVYYDLRGRGLVADSFTYPFVLRAIGVLKLSVEG 65
Query: 239 RSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIH 298
R H ++T + ++L+D+Y+ + +VA+++FD M R LV WN MI +
Sbjct: 66 RKAHAAAMKTGFWWDAYTASSLMDMYTLLGRADVARKLFDEMPHRALVVWNMMIRCYVRC 125
Query: 299 GKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIK 358
G+ I L + ++PD++T + + C RA L+ GR+ M +
Sbjct: 126 GRYTAAIALAEEMER-----SGLTPDKVTLVTSVTVCSRAGDLSLGRRIHAYMDGVFGFS 180
Query: 359 PNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVE 418
A+ + ++Y EEA ++ +MP N I W L+S F G +
Sbjct: 181 LPVAN--ALLDMYMKNGCLEEAVKLFEQMPSRN------IISWTILVSGYAFAGQLDKAR 232
Query: 419 RLAKSFVDMDPQDFSRYQFLLNVYAVAGQWED-VARVRELMKKR 461
L F +D + ++N G +E+ ++ RE+ +R
Sbjct: 233 VL---FYQCSEKDLIMWTAMINACVQHGCFEEALSLFREMQMQR 273
>gi|218192167|gb|EEC74594.1| hypothetical protein OsI_10176 [Oryza sativa Indica Group]
Length = 523
Score = 248 bits (633), Expect = 6e-63, Method: Compositional matrix adjust.
Identities = 145/463 (31%), Positives = 239/463 (51%), Gaps = 51/463 (11%)
Query: 35 GSPDYTVLVFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFM----PNSYTF 90
G+ + LVF I P F N +I+ +++ P V Y +M++ G P+ TF
Sbjct: 26 GAIAHAYLVFDQIPRPDRFMYNTLIRGAAHTAAPRDAVSLYTRMLRRGGGGGVRPDKLTF 85
Query: 91 VSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMY------------------ 132
+ +C G + G H +K G + + V N+LI M+
Sbjct: 86 PFVLRACTAMGAGDTGVQVHAHVVKAGCESDAFVKNALIGMHASCGNLGIAAALFDGRAR 145
Query: 133 -----------GCF--GAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIM 179
GC G + AR++F + +DL+SWN +++ + + GDM+ A ELFD +
Sbjct: 146 EDAVAWSAMITGCARRGDIGAARDLFDECPVKDLVSWNVMITAYAKRGDMALARELFDQV 205
Query: 180 PERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGR 239
PER+VVSWN+MISGY + G+ +L+LF +M + G + + TM S+L+AC S + G+
Sbjct: 206 PERDVVSWNVMISGYVRCGSHLHALELFEQMQRMGEKPDIVTMLSLLSACADSGDLDVGQ 265
Query: 240 SVHGYTVRTSLKPN---IILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHC 296
+H ++ N ++L ALID+Y+KC ++ A VF SM D+++ WN+++ G
Sbjct: 266 RLHS-SLSDMFSRNGFPVVLGNALIDMYAKCGSMKSAHEVFWSMRDKDVSTWNSIVGGLA 324
Query: 297 IHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYK 356
+HG E I +F ++ G V PDEITF+ V+ AC ++ +GR++F M Y+
Sbjct: 325 LHGHVLESIDMFEKMLKGKV-----RPDEITFVAVLIACSHGGMVDKGREFFNLMQHKYR 379
Query: 357 IKPNFAHYWCMANLYAGAELTEEAEEILRKMP-EDNDNMSFESIMWVSLLSLCRFQGAVA 415
++PN HY C+ ++ A L +EA E + M E N S++W +LLS CR G +
Sbjct: 380 VEPNIKHYGCIVDMLGRAGLLKEAFEFIDTMKCEPN------SVIWRTLLSACRVHGEIE 433
Query: 416 MVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELM 458
+ + + + + Y L N+YA G+W ++R+LM
Sbjct: 434 LAKHANRQLLKARNDESGDYVLLSNIYASVGEWFGSEKMRKLM 476
>gi|296083752|emb|CBI23741.3| unnamed protein product [Vitis vinifera]
Length = 545
Score = 248 bits (633), Expect = 6e-63, Method: Compositional matrix adjust.
Identities = 142/476 (29%), Positives = 256/476 (53%), Gaps = 13/476 (2%)
Query: 1 MKQLLQIQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIK 60
+K Q + +++ GL NS L+ A P ++ LVF + + F N++I
Sbjct: 39 LKLTRQSHSRILSLGLS-QNSLLATKLIFAYAICQHPYHSRLVFDSLQHKNVFLWNSLIN 97
Query: 61 AYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDF 120
Y+ + + ++ + QM + +P+ +T +L ++ G + G HG +++ G
Sbjct: 98 GYAKNRLYNEAFQLFNQMCSSDVLPDDFTLSTLSKVSSELGALFSGKSIHGKSIRIGFVS 157
Query: 121 ELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMP 180
+ V NS+++MY G + +R +F +M+ R+ SWN +++G+ SG++ +FD M
Sbjct: 158 DTVVANSIMSMYCKCGNFEESRKVFDEMTIRNSGSWNVLIAGYAVSGNLVVGRRVFDRMK 217
Query: 181 ERNVVSWNIMISGYSKSGNPGCSLKLFREM-MKSGFRGNDKTMASVLTACGRSARFNEGR 239
RNV SW MI+GY ++G+ +L LFR+M + G N ++ SVL AC + GR
Sbjct: 218 CRNVFSWTAMINGYVENGDSDEALSLFRDMQVIDGIEPNRVSLVSVLPACSSFSGLLSGR 277
Query: 240 SVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVF-DSMADRNLVCWNAMILGHCIH 298
+HG+ VR L + L ALID+YSKC ++ A+RVF D ++ + W++MI G+ +H
Sbjct: 278 QIHGFAVRKELNNEVSLCNALIDMYSKCGSLDSARRVFEDDSLCKDAISWSSMISGYGLH 337
Query: 299 GKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIK 358
GK +E I L+ ++ I PD IT +G++ AC R+ L+ EG + +I+ Y I+
Sbjct: 338 GKGQEAILLYDKMLQ-----AGIRPDMITTVGILSACSRSGLVNEGLNIYSSVINDYGIE 392
Query: 359 PNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVE 418
P + C+ ++ A + A + ++ MP + +W +L+S G + M E
Sbjct: 393 PTLEIFACIVDMLGRAGQLDPALDFIKAMPVEPGPS-----VWGALVSCSIIHGDLEMQE 447
Query: 419 RLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDL 474
+ + ++P++ S Y + N+YA + +W+ VA VR +MK +R+ ++PGC + +
Sbjct: 448 LAYRFLIQLEPENPSNYVSISNLYASSRRWDAVAEVRRMMKDKRLRKVPGCSWISI 503
>gi|297734119|emb|CBI15366.3| unnamed protein product [Vitis vinifera]
Length = 783
Score = 248 bits (633), Expect = 6e-63, Method: Compositional matrix adjust.
Identities = 129/442 (29%), Positives = 236/442 (53%), Gaps = 41/442 (9%)
Query: 43 VFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGC 102
VF ++ NA++ Y+ + P + + YLQM +G P+ +T SL +C++
Sbjct: 266 VFDLMDTKTVSSWNALLCGYAQNSDPRKALDLYLQMTDSGLDPDWFTIGSLLLACSRMKS 325
Query: 103 VERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSG 162
+ G HG AL+NG+ + + SL+++Y C
Sbjct: 326 LHYGEEIHGFALRNGLAVDPFIGISLLSLYIC---------------------------- 357
Query: 163 HVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTM 222
G AA LFD M R++VSWN+MI+GYS++G P ++ LFR+M+ G + + +
Sbjct: 358 ---CGKPFAAQVLFDGMEHRSLVSWNVMIAGYSQNGLPDEAINLFRQMLSDGIQPYEIAI 414
Query: 223 ASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMAD 282
V AC + + G+ +H + ++ L +I + +++ID+Y+K + ++QR+FD + +
Sbjct: 415 MCVCGACSQLSALRLGKELHCFALKAHLTEDIFVSSSIIDMYAKGGCIGLSQRIFDRLRE 474
Query: 283 RNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLT 342
+++ WN +I G+ IHG+ +E ++LF ++ + PD+ TF G++ AC A L+
Sbjct: 475 KDVASWNVIIAGYGIHGRGKEALELFEKMLR-----LGLKPDDFTFTGILMACSHAGLVE 529
Query: 343 EGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWV 402
+G +YF QM++ + I+P HY C+ ++ A ++A ++ +MP D D S +W
Sbjct: 530 DGLEYFNQMLNLHNIEPKLEHYTCVVDMLGRAGRIDDALRLIEEMPGDPD-----SRIWS 584
Query: 403 SLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRR 462
SLLS CR G + + E++A ++++P+ Y + N++A +G+W+DV RVR MK
Sbjct: 585 SLLSSCRIHGNLGLGEKVANKLLELEPEKPENYVLISNLFAGSGKWDDVRRVRGRMKDIG 644
Query: 463 MGRMPGCRLVDLKEVVEKLKVG 484
+ + GC +++ V +G
Sbjct: 645 LQKDAGCSWIEVGGKVHNFLIG 666
Score = 137 bits (345), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 88/313 (28%), Positives = 150/313 (47%), Gaps = 36/313 (11%)
Query: 35 GSPDYTVLVFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIK-NGFMPNSYTFVSL 93
GSP + +VF + F NA++ AY+ + + + + + ++I P+++T +
Sbjct: 155 GSPSDSRMVFDKLRRKNLFQWNAIVSAYTRNELFEDAMSIFSELISVTEHKPDNFTLPCV 214
Query: 94 FGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDL 153
+CA + G + HG+A K + ++ V N+LI MYG G ++
Sbjct: 215 IKACAGLLDLGLGQIIHGMATKMDLVSDVFVGNALIAMYGKCGLVE-------------- 260
Query: 154 ISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKS 213
A +FD+M + V SWN ++ GY+++ +P +L L+ +M S
Sbjct: 261 ----------------EAVKRVFDLMDTKTVSSWNALLCGYAQNSDPRKALDLYLQMTDS 304
Query: 214 GFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVA 273
G + T+ S+L AC R + G +HG+ +R L + + +L+ LY C K A
Sbjct: 305 GLDPDWFTIGSLLLACSRMKSLHYGEEIHGFALRNGLAVDPFIGISLLSLYICCGKPFAA 364
Query: 274 QRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVIC 333
Q +FD M R+LV WN MI G+ +G P+E I LF +++ I P EI + V
Sbjct: 365 QVLFDGMEHRSLVSWNVMIAGYSQNGLPDEAINLFRQMLS-----DGIQPYEIAIMCVCG 419
Query: 334 ACVRAELLTEGRK 346
AC + L G++
Sbjct: 420 ACSQLSALRLGKE 432
Score = 92.4 bits (228), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 67/309 (21%), Positives = 137/309 (44%), Gaps = 34/309 (11%)
Query: 6 QIQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSNS 65
+I + +GL + F I+LL G P ++F + + N +I YS +
Sbjct: 331 EIHGFALRNGLAVD-PFIGISLLSLYICCGKPFAAQVLFDGMEHRSLVSWNVMIAGYSQN 389
Query: 66 CVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVM 125
+PD+ + + QM+ +G P + + G+C++ + G H ALK + ++ V
Sbjct: 390 GLPDEAINLFRQMLSDGIQPYEIAIMCVCGACSQLSALRLGKELHCFALKAHLTEDIFVS 449
Query: 126 NSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVV 185
+S+I+MY G + ++ +F ++ +D+ SWN I+
Sbjct: 450 SSIIDMYAKGGCIGLSQRIFDRLREKDVASWNVII------------------------- 484
Query: 186 SWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYT 245
+GY G +L+LF +M++ G + +D T +L AC + +G
Sbjct: 485 ------AGYGIHGRGKEALELFEKMLRLGLKPDDFTFTGILMACSHAGLVEDGLEYFNQM 538
Query: 246 VRT-SLKPNIILDTALIDLYSKCQKVEVAQRVFDSM-ADRNLVCWNAMILGHCIHGKPEE 303
+ +++P + T ++D+ + +++ A R+ + M D + W++++ IHG
Sbjct: 539 LNLHNIEPKLEHYTCVVDMLGRAGRIDDALRLIEEMPGDPDSRIWSSLLSSCRIHGNLGL 598
Query: 304 GIKLFTALV 312
G K+ L+
Sbjct: 599 GEKVANKLL 607
Score = 84.3 bits (207), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 49/197 (24%), Positives = 98/197 (49%), Gaps = 7/197 (3%)
Query: 152 DLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMM 211
D + I++ + G S + +FD + +N+ WN ++S Y+++ ++ +F E++
Sbjct: 140 DFVLNTRIITMYSMCGSPSDSRMVFDKLRRKNLFQWNAIVSAYTRNELFEDAMSIFSELI 199
Query: 212 K-SGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKV 270
+ + ++ T+ V+ AC G+ +HG + L ++ + ALI +Y KC V
Sbjct: 200 SVTEHKPDNFTLPCVIKACAGLLDLGLGQIIHGMATKMDLVSDVFVGNALIAMYGKCGLV 259
Query: 271 EVA-QRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFI 329
E A +RVFD M + + WNA++ G+ + P + + L+ + + + PD T
Sbjct: 260 EEAVKRVFDLMDTKTVSSWNALLCGYAQNSDPRKALDLYLQMTD-----SGLDPDWFTIG 314
Query: 330 GVICACVRAELLTEGRK 346
++ AC R + L G +
Sbjct: 315 SLLLACSRMKSLHYGEE 331
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 58/117 (49%), Gaps = 5/117 (4%)
Query: 220 KTMASVLTACGRSARFNEGRSVHG-YTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFD 278
+ M +L ACG+ GR +H + T + +L+T +I +YS C ++ VFD
Sbjct: 106 EAMGVLLQACGQRKDIEVGRRLHEMVSASTQFCNDFVLNTRIITMYSMCGSPSDSRMVFD 165
Query: 279 SMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICAC 335
+ +NL WNA++ + + E+ + +F+ L++ T PD T VI AC
Sbjct: 166 KLRRKNLFQWNAIVSAYTRNELFEDAMSIFSELISVT----EHKPDNFTLPCVIKAC 218
Score = 43.5 bits (101), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 41/183 (22%), Positives = 83/183 (45%), Gaps = 14/183 (7%)
Query: 7 IQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSNSC 66
++AHL T +F ++S ++ A G + +F + N +I Y
Sbjct: 438 LKAHL-TEDIFVSSS-----IIDMYAKGGCIGLSQRIFDRLREKDVASWNVIIAGYGIHG 491
Query: 67 VPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALK-NGVDFELPVM 125
+ + + +M++ G P+ +TF + +C+ G VE G L + ++ +L
Sbjct: 492 RGKEALELFEKMLRLGLKPDDFTFTGILMACSHAGLVEDGLEYFNQMLNLHNIEPKLEHY 551
Query: 126 NSLINMYGCFGAMDCARNMFVQMSPRDLIS--WNSIVSGHVRSGDM----SAAHELFDIM 179
+++M G G +D A + +M P D S W+S++S G++ A++L ++
Sbjct: 552 TCVVDMLGRAGRIDDALRLIEEM-PGDPDSRIWSSLLSSCRIHGNLGLGEKVANKLLELE 610
Query: 180 PER 182
PE+
Sbjct: 611 PEK 613
>gi|357146237|ref|XP_003573921.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g29230-like [Brachypodium distachyon]
Length = 531
Score = 248 bits (632), Expect = 7e-63, Method: Compositional matrix adjust.
Identities = 149/486 (30%), Positives = 237/486 (48%), Gaps = 18/486 (3%)
Query: 7 IQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSNSC 66
I L +GL + LL G + +F + N A+ +A++ S
Sbjct: 32 IHCLLFKAGLLHAGAHLPTALLSAYGALGRSGHARDLFDEMPNQSLVARTAMARAHAVSG 91
Query: 67 VPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTG-CVER---GGMCHGLALKNGVDFEL 122
Q + + MI +GFMP++ + +C G C R G M H + G++ ++
Sbjct: 92 QAAQALDLFQDMIADGFMPDNVALAVVLAACHGAGSCTARRSPGRMVHAFIVACGIEPDV 151
Query: 123 PVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPER 182
V LI +YG G M AR +F M + I+WN++V +VR+ D+ AA+ LF MP R
Sbjct: 152 FVSTELIRVYGERGEMTVARRVFDSMPTKSTIAWNTMVHQYVRNKDIEAAYRLFLAMPRR 211
Query: 183 NVVSWNIMISGYSKSGNPGCSLKLFREMMKSG---FRGNDKTMASVLTACGRSARFNEGR 239
+VVSWN +I+GY G +L LFR+M+ N TM++VL+AC + G
Sbjct: 212 DVVSWNTVIAGYCLVGRCKEALGLFRQMVSPSSCTVHPNGPTMSTVLSACAGAGCLETGI 271
Query: 240 SVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFD-SMADRNLVCWNAMILGHCIH 298
VH Y + + N LD LID+Y+KC ++ A +VF+ + R+L W +I G +H
Sbjct: 272 WVHLYIDKNQMNDNGTLDRCLIDMYAKCGSIDKALQVFEKAPGKRDLYSWTTVICGLAMH 331
Query: 299 GKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIK 358
G+ + +++F+ + + + PD++TF+GV+ AC L+ EG +F M + Y+I
Sbjct: 332 GRANDVLRMFSMMQD-----SGMCPDDVTFVGVLNACAHGGLVDEGLHHFYSMQEKYRIT 386
Query: 359 PNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVE 418
P HY CM +L EA +++ MP M ++W + LS C+ +V + E
Sbjct: 387 PKIEHYGCMIDLLGRVGRLPEAYRMIQTMP-----MKPNMVIWGAFLSACKVHSSVELGE 441
Query: 419 RLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLKEVV 478
A +DP D + ++YA A W +AR R M +M + PGC V L V
Sbjct: 442 IAAAEVTRLDPDDPWARVMMSSMYAKAQDWSGLARERREMNSLQMKKTPGCSSVALDGEV 501
Query: 479 EKLKVG 484
+ G
Sbjct: 502 HEFVAG 507
>gi|225433758|ref|XP_002267783.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g29230-like [Vitis vinifera]
Length = 636
Score = 248 bits (632), Expect = 7e-63, Method: Compositional matrix adjust.
Identities = 156/523 (29%), Positives = 255/523 (48%), Gaps = 59/523 (11%)
Query: 1 MKQLLQIQAHLITSGLFFNNSFWTINLLK--HSADFGSPDYTVLVFK--CINNPGTFCVN 56
+K++ Q Q + SGLF N+ F ++ + GS Y +F+ ++NP F N
Sbjct: 125 VKEVEQTQCLITKSGLF-NHPFVISKIISFLSLSPLGSLVYAQAIFEDTAMDNP--FVCN 181
Query: 57 AVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKT--------GCVE---- 104
+I+AY+ S P + + Y M + + +T+ +CA+ C +
Sbjct: 182 TMIRAYAKSVFPIKAIYLYNFMHRKDIKSDHFTYPFGLKACARVLWCNEGDIKCTQLDIA 241
Query: 105 -RGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGH 163
+G H + G+D + + NSL+ +Y G +D AR +F +M+ + + SWN ++S +
Sbjct: 242 CKGAEIHCRLFRLGLDQDCFIQNSLVYLYSQCGFLDLARCVFDEMTEKTITSWNVMISAY 301
Query: 164 -------------------------------VRSGDMSAAHELFDIMPERNVVSWNIMIS 192
+R G + A +F MPER+ VSWN MI+
Sbjct: 302 DQINDFDSADSLIGSMPGKNVVSWNMLIARYIRLGKIEDAKVVFQEMPERDAVSWNSMIA 361
Query: 193 GYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKP 252
GY + + +L LFREM + D T+ SVL AC + GR +H + K
Sbjct: 362 GYVQIKDYARALALFREMEIANVEATDITLISVLGACAETGALEIGRKIHLSLKQREYKI 421
Query: 253 NIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALV 312
L AL+D+Y+KC + +A VF + +++ CWNAMI+ +HG EE ++LF+ +
Sbjct: 422 EGYLSNALVDMYAKCGHLNLAWEVFSELKMKHISCWNAMIVSLAVHGYCEEALRLFSTM- 480
Query: 313 NGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYA 372
+V G P+ +TFIGV+ AC L+ EGR +F +M++ YKI P+ HY CM +L +
Sbjct: 481 EMSVDGA--RPNRVTFIGVLIACSHKGLVDEGRTFFNRMVNEYKIMPDIKHYGCMVDLLS 538
Query: 373 GAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDF 432
L +EA +++ MP + + S++W +LL CR V + E + M+P
Sbjct: 539 RCGLLKEAHHMIKTMPFEAN-----SVLWRTLLGACRVHHHVDLAEESFQQLGKMEPLRD 593
Query: 433 SRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLK 475
Y L N+YA A +W DV RVR M + + PG + ++
Sbjct: 594 GDYVLLSNIYAEAQRWNDVERVRSEMIGSGVPKKPGSSHIGIR 636
>gi|255567371|ref|XP_002524665.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223536026|gb|EEF37684.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 2000
Score = 248 bits (632), Expect = 7e-63, Method: Compositional matrix adjust.
Identities = 139/423 (32%), Positives = 233/423 (55%), Gaps = 9/423 (2%)
Query: 56 NAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALK 115
+A+I Y S P++ + + +MI+ GF PN F S+ + A ++ G HG K
Sbjct: 285 SAMIARYCQSGYPEESLRLFCRMIQEGFKPNISCFSSILSALASVEALQAGMNIHGHVTK 344
Query: 116 NGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHEL 175
G + ++ V +SLI+MY G R +F + ++++SWN++V G+ +G M A L
Sbjct: 345 IGFEKDVFVSSSLIDMYCKCGETKDGRFLFDTILEKNMVSWNAMVGGYSLNGHMEEAKYL 404
Query: 176 FDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARF 235
F+IMP RN VSW+ +I+G+ ++F EM+ G N T +S+L AC +A
Sbjct: 405 FNIMPVRNNVSWSAIIAGHLDCEQFDEMFEVFNEMILLGEIPNKSTFSSLLCACASTASL 464
Query: 236 NEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGH 295
++G+++HG V+ ++ + + TAL D+Y+K +E +++VF+ M +N V W AMI G
Sbjct: 465 DKGKNLHGKIVKLGIQCDTYVGTALTDMYAKSGDIESSKKVFNRMPKKNEVSWTAMIQGL 524
Query: 296 CIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFY 355
G EE + LF + + SI+P+E+ F+ V+ AC + L+ +G YF M Y
Sbjct: 525 AESGLAEESLTLFEEMEKTS----SIAPNEVMFLAVLFACSHSGLVDKGLWYFNSMEAVY 580
Query: 356 KIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVA 415
+KP H+ C+ ++ + A EAEE + MP E+ W +LLS C+
Sbjct: 581 GLKPKGRHFTCVVDMLSRAGRLFEAEEFIYSMP-----FQPETNAWAALLSGCKTYKNEE 635
Query: 416 MVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLK 475
+ ER+A +M ++ + Y L N+YA AG+W DV +VR+LMK + + + GC V+++
Sbjct: 636 LAERVAGKLWEMAEKNCAGYVLLSNIYASAGRWRDVLKVRKLMKAKGLKKSGGCSWVEIR 695
Query: 476 EVV 478
+ V
Sbjct: 696 DRV 698
Score = 180 bits (457), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 102/377 (27%), Positives = 194/377 (51%), Gaps = 35/377 (9%)
Query: 56 NAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALK 115
A I Y + + + +++++++ PN TF S+ +CA G G GL +K
Sbjct: 153 TAAISGYVQNGFSVEAMKLFIKLLESEVKPNKVTFTSVVRACANLGDFGLGMSVLGLIVK 212
Query: 116 NGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHEL 175
G + +L V NSLI + G + AR +F +M +D++SW +I+ +V ++ A +
Sbjct: 213 TGYEHDLAVSNSLITLCLRMGEIHLAREVFDRMEEKDVVSWTAILDLYVEMDELGEARRI 272
Query: 176 FDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARF 235
FD MP+RN VSW+ MI+ Y +SG P SL+LF M++ GF+ N +S+L+A
Sbjct: 273 FDEMPQRNEVSWSAMIARYCQSGYPEESLRLFCRMIQEGFKPNISCFSSILSALASVEAL 332
Query: 236 NEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGH 295
G ++HG+ + + ++ + ++LID+Y KC + + + +FD++ ++N+V WNAM+ G+
Sbjct: 333 QAGMNIHGHVTKIGFEKDVFVSSSLIDMYCKCGETKDGRFLFDTILEKNMVSWNAMVGGY 392
Query: 296 CIHGKPEEGIKLFTALV-------NGTVAG--------------------GSISPDEITF 328
++G EE LF + + +AG G I P++ TF
Sbjct: 393 SLNGHMEEAKYLFNIMPVRNNVSWSAIIAGHLDCEQFDEMFEVFNEMILLGEI-PNKSTF 451
Query: 329 IGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMP 388
++CAC L +G+ +++ I+ + + ++YA + E ++++ +MP
Sbjct: 452 SSLLCACASTASLDKGKNLHGKIVKL-GIQCDTYVGTALTDMYAKSGDIESSKKVFNRMP 510
Query: 389 EDNDNMSFESIMWVSLL 405
+ N+ + W +++
Sbjct: 511 KKNE------VSWTAMI 521
Score = 119 bits (297), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 90/337 (26%), Positives = 151/337 (44%), Gaps = 54/337 (16%)
Query: 49 NPGTF-------CVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSL---FGSCA 98
NP T CV +++K +N + G + + K G Y + L + +
Sbjct: 12 NPATHFKTYAQTCV-SLLKNLTNQGLIRDGSALHAHLFKTGISSEQYISIKLLIMYLNYR 70
Query: 99 KTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNS 158
K+ ++ K+ F+L V N +I+ G +D AR +F +M + ISW +
Sbjct: 71 KSAEADQIS-------KDFDGFDLVVHNCMISANVQRGNLDEARKLFDEMPQTNEISWTA 123
Query: 159 IVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGN 218
++SG ++ G + + F+ P +NVVSW ISGY ++G ++KLF ++++S + N
Sbjct: 124 LISGFMKYGRVRESMWYFERNPFQNVVSWTAAISGYVQNGFSVEAMKLFIKLLESEVKPN 183
Query: 219 DKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILD--------------------- 257
T SV+ AC F G SV G V+T + ++ +
Sbjct: 184 KVTFTSVVRACANLGDFGLGMSVLGLIVKTGYEHDLAVSNSLITLCLRMGEIHLAREVFD 243
Query: 258 ----------TALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKL 307
TA++DLY + ++ A+R+FD M RN V W+AMI +C G PEE ++L
Sbjct: 244 RMEEKDVVSWTAILDLYVEMDELGEARRIFDEMPQRNEVSWSAMIARYCQSGYPEESLRL 303
Query: 308 FTALVNGTVAGGSISPDEITFIGVICACVRAELLTEG 344
F ++ P+ F ++ A E L G
Sbjct: 304 FCRMIQ-----EGFKPNISCFSSILSALASVEALQAG 335
>gi|449470104|ref|XP_004152758.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g25360-like [Cucumis sativus]
gi|449504088|ref|XP_004162249.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g25360-like [Cucumis sativus]
Length = 797
Score = 248 bits (632), Expect = 8e-63, Method: Compositional matrix adjust.
Identities = 138/428 (32%), Positives = 222/428 (51%), Gaps = 14/428 (3%)
Query: 56 NAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALK 115
NA+I Y + + + + + +M G + T+ S+ +CA G G H LK
Sbjct: 258 NAMISGYLHHGLFEDALTLFRKMRLLGVQVDESTYTSVISACADGGFFLLGKQVHAYILK 317
Query: 116 NGV----DFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSA 171
N + DF L V N+LI +Y +G +D AR +F +M +D+I+WN+++SG+V +G M
Sbjct: 318 NELNPDRDFLLSVGNTLITLYWKYGKVDGARKIFYEMPVKDIITWNTLLSGYVNAGRMEE 377
Query: 172 AHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGR 231
A F MPE+N+++W +MISG +++G +LKLF +M G+ ND A +TAC
Sbjct: 378 AKSFFAQMPEKNLLTWTVMISGLAQNGFGEQALKLFNQMKLDGYEPNDYAFAGAITACSV 437
Query: 232 SARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAM 291
GR +H V + + A+I +Y++C VE A+ +F +M + V WN+M
Sbjct: 438 LGALENGRQLHAQIVHLGHDSTLSVGNAMITMYARCGIVEAARTMFLTMPFVDPVSWNSM 497
Query: 292 ILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQM 351
I HG + I+L+ ++ I PD TF+ V+ AC A L+ EG +YF M
Sbjct: 498 IAALGQHGHGVKAIELYEQMLK-----EGILPDRRTFLTVLSACSHAGLVEEGNRYFNSM 552
Query: 352 IDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQ 411
++ Y I P HY M +L+ A +A+ ++ MP + +W +LL+ CR
Sbjct: 553 LENYGIAPGEDHYARMIDLFCRAGKFSDAKNVIDSMP-----FEARAPIWEALLAGCRTH 607
Query: 412 GAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRL 471
G + + A+ + PQ Y L N+YA G+W DVAR R+LM+ R + + P C
Sbjct: 608 GNMDLGIEAAEKLFKLIPQHDGTYVLLSNMYASLGRWNDVARTRKLMRDRGVKKEPACSW 667
Query: 472 VDLKEVVE 479
+++ V
Sbjct: 668 TEVENKVH 675
Score = 156 bits (395), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 122/471 (25%), Positives = 211/471 (44%), Gaps = 59/471 (12%)
Query: 52 TFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERG-GMCH 110
T NA+I YS+ + + M F P+ +TF S+ + ER G H
Sbjct: 112 TVFYNAMITGYSHMNDGHSAIELFRAMRWANFQPDDFTFASVLSASTLIFYDERQCGQMH 171
Query: 111 GLALKNGVDFELPVMNSLINMY---------GCFGAMDCARNMFVQMSPRDLISWNSIVS 161
G +K G++ V+N+L+++Y M AR +F +M R+ W ++++
Sbjct: 172 GTVVKFGIEIFPAVLNALLSVYVKCASSPLVSSSSLMASARKLFDEMPKRNEFIWTTLIT 231
Query: 162 GHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKT 221
G+VR+GD++ A E+ D M E+ ++WN MISGY G +L LFR+M G + ++ T
Sbjct: 232 GYVRNGDLTGAREILDTMTEQPGIAWNAMISGYLHHGLFEDALTLFRKMRLLGVQVDEST 291
Query: 222 MASVLTACGRSARFNEGRSVHGYTVRTSLKPN----IILDTALIDLYSKCQKVEVAQRVF 277
SV++AC F G+ VH Y ++ L P+ + + LI LY K KV+ A+++F
Sbjct: 292 YTSVISACADGGFFLLGKQVHAYILKNELNPDRDFLLSVGNTLITLYWKYGKVDGARKIF 351
Query: 278 DSMADRNLVCWNAMILGHCIHGK-----------PEEGIKLFTALVNGTVAGG------- 319
M ++++ WN ++ G+ G+ PE+ + +T +++G G
Sbjct: 352 YEMPVKDIITWNTLLSGYVNAGRMEEAKSFFAQMPEKNLLTWTVMISGLAQNGFGEQALK 411
Query: 320 --------SISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLY 371
P++ F G I AC L GR+ Q++ + M +Y
Sbjct: 412 LFNQMKLDGYEPNDYAFAGAITACSVLGALENGRQLHAQIVHLGH-DSTLSVGNAMITMY 470
Query: 372 AGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQG----AVAMVERLAKSFVDM 427
A + E A + MP + + W S+++ G A+ + E++ K +
Sbjct: 471 ARCGIVEAARTMFLTMP------FVDPVSWNSMIAALGQHGHGVKAIELYEQMLKEGILP 524
Query: 428 DPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPG----CRLVDL 474
D + F +L+ + AG E+ R M + G PG R++DL
Sbjct: 525 DRRTFLT---VLSACSHAGLVEEGNRYFNSMLE-NYGIAPGEDHYARMIDL 571
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 94/370 (25%), Positives = 161/370 (43%), Gaps = 67/370 (18%)
Query: 110 HGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDM 169
HG + +G ++N LI++Y AR +F ++ D+I+ ++++ + G++
Sbjct: 36 HGHVIASGFKLRGHIVNRLIDIYWKSSDFVYARKLFDEIPQPDVIARTTLITAYSALGNL 95
Query: 170 SAAHELFDIMP--ERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLT 227
A E+F+ P R+ V +N MI+GYS + +++LFR M + F+ +D T ASVL+
Sbjct: 96 KMAREIFNETPLDMRDTVFYNAMITGYSHMNDGHSAIELFRAMRWANFQPDDFTFASVLS 155
Query: 228 ACGRSARFNEGR---SVHGYTVRTSLKPNIILDTALIDLYSKC---------QKVEVAQR 275
A + F + R +HG V+ ++ + AL+ +Y KC + A++
Sbjct: 156 AS--TLIFYDERQCGQMHGTVVKFGIEIFPAVLNALLSVYVKCASSPLVSSSSLMASARK 213
Query: 276 VFDSMADRNL-------------------------------VCWNAMILGHCIHGKPEEG 304
+FD M RN + WNAMI G+ HG E+
Sbjct: 214 LFDEMPKRNEFIWTTLITGYVRNGDLTGAREILDTMTEQPGIAWNAMISGYLHHGLFEDA 273
Query: 305 IKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHY 364
+ LF + + G + DE T+ VI AC G++ ++ ++ P+
Sbjct: 274 LTLFRKM---RLLG--VQVDESTYTSVISACADGGFFLLGKQVHAYILK-NELNPDRDFL 327
Query: 365 WCMAN----LYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERL 420
+ N LY + A +I +MP + I W +LLS + A M E
Sbjct: 328 LSVGNTLITLYWKYGKVDGARKIFYEMPVK------DIITWNTLLS--GYVNAGRMEE-- 377
Query: 421 AKSFVDMDPQ 430
AKSF P+
Sbjct: 378 AKSFFAQMPE 387
>gi|225455746|ref|XP_002268440.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g18485-like [Vitis vinifera]
Length = 881
Score = 248 bits (632), Expect = 8e-63, Method: Compositional matrix adjust.
Identities = 129/442 (29%), Positives = 236/442 (53%), Gaps = 41/442 (9%)
Query: 43 VFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGC 102
VF ++ NA++ Y+ + P + + YLQM +G P+ +T SL +C++
Sbjct: 364 VFDLMDTKTVSSWNALLCGYAQNSDPRKALDLYLQMTDSGLDPDWFTIGSLLLACSRMKS 423
Query: 103 VERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSG 162
+ G HG AL+NG+ + + SL+++Y C
Sbjct: 424 LHYGEEIHGFALRNGLAVDPFIGISLLSLYIC---------------------------- 455
Query: 163 HVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTM 222
G AA LFD M R++VSWN+MI+GYS++G P ++ LFR+M+ G + + +
Sbjct: 456 ---CGKPFAAQVLFDGMEHRSLVSWNVMIAGYSQNGLPDEAINLFRQMLSDGIQPYEIAI 512
Query: 223 ASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMAD 282
V AC + + G+ +H + ++ L +I + +++ID+Y+K + ++QR+FD + +
Sbjct: 513 MCVCGACSQLSALRLGKELHCFALKAHLTEDIFVSSSIIDMYAKGGCIGLSQRIFDRLRE 572
Query: 283 RNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLT 342
+++ WN +I G+ IHG+ +E ++LF ++ + PD+ TF G++ AC A L+
Sbjct: 573 KDVASWNVIIAGYGIHGRGKEALELFEKMLR-----LGLKPDDFTFTGILMACSHAGLVE 627
Query: 343 EGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWV 402
+G +YF QM++ + I+P HY C+ ++ A ++A ++ +MP D D S +W
Sbjct: 628 DGLEYFNQMLNLHNIEPKLEHYTCVVDMLGRAGRIDDALRLIEEMPGDPD-----SRIWS 682
Query: 403 SLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRR 462
SLLS CR G + + E++A ++++P+ Y + N++A +G+W+DV RVR MK
Sbjct: 683 SLLSSCRIHGNLGLGEKVANKLLELEPEKPENYVLISNLFAGSGKWDDVRRVRGRMKDIG 742
Query: 463 MGRMPGCRLVDLKEVVEKLKVG 484
+ + GC +++ V +G
Sbjct: 743 LQKDAGCSWIEVGGKVHNFLIG 764
Score = 132 bits (331), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 88/310 (28%), Positives = 152/310 (49%), Gaps = 38/310 (12%)
Query: 35 GSPDYTVLVFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIK-NGFMPNSYTFVSL 93
GSP + +VF + F NA++ AY+ + + + + + ++I P+++T +
Sbjct: 48 GSPSDSRMVFDKLRRKNLFQWNAIVSAYTRNELFEDAMSIFSELISVTEHKPDNFTLPCV 107
Query: 94 FGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDL 153
+CA + G + HG+A K + ++ V N+LI MYG
Sbjct: 108 IKACAGLLDLGLGQIIHGMATKMDLVSDVFVGNALIAMYG-------------------- 147
Query: 154 ISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMM-- 211
+ G + A ++F+ MPERN+VSWN +I G+S++G S FREM+
Sbjct: 148 -----------KCGLVEEAVKVFEHMPERNLVSWNSIICGFSENGFLQESFNAFREMLVG 196
Query: 212 KSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVE 271
+ F + T+ +VL C +G +VHG V+ L ++++ +LID+YSKC+ +
Sbjct: 197 EESFVPDVATLVTVLPVCAGEEDIEKGMAVHGLAVKLGLNEELMVNNSLIDMYSKCRFLS 256
Query: 272 VAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGV 331
AQ +FD +N+V WN+MI G + + E+ + F L + DE T + V
Sbjct: 257 EAQLLFDKNDKKNIVSWNSMIGG---YAREEDVCRTFYLLQKMQTEDAKMKADEFTILNV 313
Query: 332 ICACV-RAEL 340
+ C+ R+EL
Sbjct: 314 LPVCLERSEL 323
Score = 120 bits (302), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 62/190 (32%), Positives = 104/190 (54%), Gaps = 5/190 (2%)
Query: 157 NSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFR 216
N+ ++ + R G + ++ +FD+M + V SWN ++ GY+++ +P +L L+ +M SG
Sbjct: 346 NAFIAAYTRCGALCSSERVFDLMDTKTVSSWNALLCGYAQNSDPRKALDLYLQMTDSGLD 405
Query: 217 GNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRV 276
+ T+ S+L AC R + G +HG+ +R L + + +L+ LY C K AQ +
Sbjct: 406 PDWFTIGSLLLACSRMKSLHYGEEIHGFALRNGLAVDPFIGISLLSLYICCGKPFAAQVL 465
Query: 277 FDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACV 336
FD M R+LV WN MI G+ +G P+E I LF +++ I P EI + V AC
Sbjct: 466 FDGMEHRSLVSWNVMIAGYSQNGLPDEAINLFRQMLS-----DGIQPYEIAIMCVCGACS 520
Query: 337 RAELLTEGRK 346
+ L G++
Sbjct: 521 QLSALRLGKE 530
Score = 117 bits (294), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 81/316 (25%), Positives = 149/316 (47%), Gaps = 40/316 (12%)
Query: 35 GSPDYTVLVFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMI--KNGFMPNSYTFVS 92
G + V VF+ + N++I +S + + + +M+ + F+P+ T V+
Sbjct: 150 GLVEEAVKVFEHMPERNLVSWNSIICGFSENGFLQESFNAFREMLVGEESFVPDVATLVT 209
Query: 93 LFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRD 152
+ CA +E+G HGLA+K G++ EL V NSLI+MY ++ F
Sbjct: 210 VLPVCAGEEDIEKGMAVHGLAVKLGLNEELMVNNSLIDMY--------SKCRF------- 254
Query: 153 LISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMM- 211
+S A LFD ++N+VSWN MI GY++ + + L ++M
Sbjct: 255 ----------------LSEAQLLFDKNDKKNIVSWNSMIGGYAREEDVCRTFYLLQKMQT 298
Query: 212 -KSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKV 270
+ + ++ T+ +VL C + + +HGY+ R L+ N ++ A I Y++C +
Sbjct: 299 EDAKMKADEFTILNVLPVCLERSELQSLKELHGYSWRHGLQSNELVANAFIAAYTRCGAL 358
Query: 271 EVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIG 330
++RVFD M + + WNA++ G+ + P + + L+ + + + PD T
Sbjct: 359 CSSERVFDLMDTKTVSSWNALLCGYAQNSDPRKALDLYLQMTD-----SGLDPDWFTIGS 413
Query: 331 VICACVRAELLTEGRK 346
++ AC R + L G +
Sbjct: 414 LLLACSRMKSLHYGEE 429
Score = 92.8 bits (229), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 67/309 (21%), Positives = 137/309 (44%), Gaps = 34/309 (11%)
Query: 6 QIQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSNS 65
+I + +GL + F I+LL G P ++F + + N +I YS +
Sbjct: 429 EIHGFALRNGLAVD-PFIGISLLSLYICCGKPFAAQVLFDGMEHRSLVSWNVMIAGYSQN 487
Query: 66 CVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVM 125
+PD+ + + QM+ +G P + + G+C++ + G H ALK + ++ V
Sbjct: 488 GLPDEAINLFRQMLSDGIQPYEIAIMCVCGACSQLSALRLGKELHCFALKAHLTEDIFVS 547
Query: 126 NSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVV 185
+S+I+MY G + ++ +F ++ +D+ SWN I++
Sbjct: 548 SSIIDMYAKGGCIGLSQRIFDRLREKDVASWNVIIA------------------------ 583
Query: 186 SWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYT 245
GY G +L+LF +M++ G + +D T +L AC + +G
Sbjct: 584 -------GYGIHGRGKEALELFEKMLRLGLKPDDFTFTGILMACSHAGLVEDGLEYFNQM 636
Query: 246 VRT-SLKPNIILDTALIDLYSKCQKVEVAQRVFDSM-ADRNLVCWNAMILGHCIHGKPEE 303
+ +++P + T ++D+ + +++ A R+ + M D + W++++ IHG
Sbjct: 637 LNLHNIEPKLEHYTCVVDMLGRAGRIDDALRLIEEMPGDPDSRIWSSLLSSCRIHGNLGL 696
Query: 304 GIKLFTALV 312
G K+ L+
Sbjct: 697 GEKVANKLL 705
Score = 90.9 bits (224), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 53/194 (27%), Positives = 98/194 (50%), Gaps = 4/194 (2%)
Query: 152 DLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMM 211
D + I++ + G S + +FD + +N+ WN ++S Y+++ ++ +F E++
Sbjct: 33 DFVLNTRIITMYSMCGSPSDSRMVFDKLRRKNLFQWNAIVSAYTRNELFEDAMSIFSELI 92
Query: 212 K-SGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKV 270
+ + ++ T+ V+ AC G+ +HG + L ++ + ALI +Y KC V
Sbjct: 93 SVTEHKPDNFTLPCVIKACAGLLDLGLGQIIHGMATKMDLVSDVFVGNALIAMYGKCGLV 152
Query: 271 EVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIG 330
E A +VF+ M +RNLV WN++I G +G +E F ++ G S PD T +
Sbjct: 153 EEAVKVFEHMPERNLVSWNSIICGFSENGFLQESFNAFREMLVGE---ESFVPDVATLVT 209
Query: 331 VICACVRAELLTEG 344
V+ C E + +G
Sbjct: 210 VLPVCAGEEDIEKG 223
Score = 64.3 bits (155), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 51/175 (29%), Positives = 80/175 (45%), Gaps = 14/175 (8%)
Query: 222 MASVLTACGRSARFNEGRSVHG-YTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSM 280
M +L ACG+ GR +H + T + +L+T +I +YS C ++ VFD +
Sbjct: 1 MGVLLQACGQRKDIEVGRRLHEMVSASTQFCNDFVLNTRIITMYSMCGSPSDSRMVFDKL 60
Query: 281 ADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAEL 340
+NL WNA++ + + E+ + +F+ L++ T PD T VI AC A L
Sbjct: 61 RRKNLFQWNAIVSAYTRNELFEDAMSIFSELISVT----EHKPDNFTLPCVIKAC--AGL 114
Query: 341 LTEGRKYFRQMIDFYKIKPNFAHYWCMAN----LYAGAELTEEAEEILRKMPEDN 391
L G Q+I K + + N +Y L EEA ++ MPE N
Sbjct: 115 LDLG---LGQIIHGMATKMDLVSDVFVGNALIAMYGKCGLVEEAVKVFEHMPERN 166
Score = 43.5 bits (101), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 41/183 (22%), Positives = 83/183 (45%), Gaps = 14/183 (7%)
Query: 7 IQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSNSC 66
++AHL T +F ++S ++ A G + +F + N +I Y
Sbjct: 536 LKAHL-TEDIFVSSS-----IIDMYAKGGCIGLSQRIFDRLREKDVASWNVIIAGYGIHG 589
Query: 67 VPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALK-NGVDFELPVM 125
+ + + +M++ G P+ +TF + +C+ G VE G L + ++ +L
Sbjct: 590 RGKEALELFEKMLRLGLKPDDFTFTGILMACSHAGLVEDGLEYFNQMLNLHNIEPKLEHY 649
Query: 126 NSLINMYGCFGAMDCARNMFVQMSPRDLIS--WNSIVSGHVRSGDM----SAAHELFDIM 179
+++M G G +D A + +M P D S W+S++S G++ A++L ++
Sbjct: 650 TCVVDMLGRAGRIDDALRLIEEM-PGDPDSRIWSSLLSSCRIHGNLGLGEKVANKLLELE 708
Query: 180 PER 182
PE+
Sbjct: 709 PEK 711
>gi|296089078|emb|CBI38781.3| unnamed protein product [Vitis vinifera]
Length = 589
Score = 248 bits (632), Expect = 8e-63, Method: Compositional matrix adjust.
Identities = 146/501 (29%), Positives = 253/501 (50%), Gaps = 52/501 (10%)
Query: 5 LQIQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSN 64
L ++ HL+ + LF ++ + L HS D +Y +F + NP F N +I+ Y+
Sbjct: 33 LLLRTHLLHNPLF-SSKLISFLALSHSGDL---NYARKLFTQMQNPDPFICNTMIRGYAR 88
Query: 65 SCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPV 124
S P + V Y M++ G ++YT+ + +CA+ G V+ G H LKNG +L V
Sbjct: 89 SQNPYEAVSLYYFMVERGVPVDNYTYPFVLAACARLGAVKLGRRFHCEVLKNGFGSDLFV 148
Query: 125 MNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNV 184
+N+LI Y G+ CA ++FD R+V
Sbjct: 149 INALIQFYHNCGSFGCAC-------------------------------DVFDESTVRDV 177
Query: 185 VSWNIMISGYSKSGNPGCSLKLFREMMK-SGFRGNDKTMASVLTACGRSARFNEGRSVHG 243
V+WNIMI+ + G + L EM K R ++ TM S++ AC + G+ +H
Sbjct: 178 VTWNIMINAHLNKGLSEKAFDLLDEMTKLDNLRPDEVTMVSLVPACAQLGNLERGKFLHS 237
Query: 244 YTV---RTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGK 300
Y+ + + +++L+TAL+D+Y+KC +++A +VF M RN+ WNA+I G +HG
Sbjct: 238 YSKELDKFEINCDLVLETALVDMYAKCGSIDLALQVFRRMRVRNVFTWNALIGGLAMHGH 297
Query: 301 PEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPN 360
E+ I LF + + + PD++TFI ++CAC A L+ EG F+ M + ++I+P
Sbjct: 298 GEDAISLFDQMEHD-----KLMPDDVTFIALLCACSHAGLVDEGLAMFQAMKNKFQIEPR 352
Query: 361 FAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERL 420
HY C+ +L A ++A + MP + S++W +LL CR G + E++
Sbjct: 353 MEHYGCVVDLLCRARKVDDALAFIENMP-----IKANSVLWATLLGACRSGGHFDLAEKI 407
Query: 421 AKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLKEVVEK 480
+ ++++P RY L N+YA QW+ ++R+ MK + + + PGC ++L ++ +
Sbjct: 408 GRRVIELEPDSCGRYVMLSNLYAGVSQWDHALKLRKQMKNKGIEKTPGCSWIELNGMIHQ 467
Query: 481 LKVGHFWRGGMK-EEVNKMME 500
G R ++ E++ M+E
Sbjct: 468 FVAGD--RSHLQTEQIYAMIE 486
>gi|21780142|gb|AAM77644.1|AF517844_1 hypothetical protein [Arabidopsis thaliana]
Length = 603
Score = 247 bits (631), Expect = 8e-63, Method: Compositional matrix adjust.
Identities = 152/516 (29%), Positives = 265/516 (51%), Gaps = 53/516 (10%)
Query: 1 MKQLLQIQAHLITSGLFFNNSFWT--INLLKHSADFGSPDYTVLVFKCINNPGTFCVNAV 58
+++L+QIQA+ I S + + SF IN S S Y +F+ ++ P N++
Sbjct: 42 LRELMQIQAYAIKSHIE-DVSFVAKLINFCTESPTESSMSYARHLFEAMSEPDIVIFNSM 100
Query: 59 IKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGV 118
+ YS P + +++++++G +P++YTF SL +CA +E G H L++K G+
Sbjct: 101 ARGYSRFTNPLEVFSLFVEILEDGILPDNYTFPSLLKACAVAKALEEGRQLHCLSMKLGL 160
Query: 119 DFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDI 178
D + V +LINMY +C D+ +A +FD
Sbjct: 161 DDNVYVCPTLINMY-----TECE--------------------------DVDSARXVFDR 189
Query: 179 MPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEG 238
+ E VV +N MI+GY++ P +L LFREM + N+ T+ SVL++C + G
Sbjct: 190 IVEPCVVCYNAMITGYARRNRPNEALSLFREMQGKYLKPNEITLLSVLSSCALLGSLDLG 249
Query: 239 RSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIH 298
+ +H Y + S + ++TALID+++KC ++ A +F+ M ++ W+AMI+ + H
Sbjct: 250 KWIHKYAKKHSFCKYVKVNTALIDMFAKCGSLDDAVSIFEKMRYKDTQAWSAMIVAYANH 309
Query: 299 GKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIK 358
GK E+ + +F + ++ PDEITF+G++ AC + EGRKYF QM+ + I
Sbjct: 310 GKAEKSMLMFERM-----RSENVQPDEITFLGLLNACSHTGRVEEGRKYFSQMVSKFGIV 364
Query: 359 PNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVE 418
P+ HY M +L + A E+A E + K+P +S ++W LL+ C + + E
Sbjct: 365 PSIKHYGSMVDLLSXAGNLEDAYEFIDKLP-----ISPTPMLWRILLAACSSHNNLDLAE 419
Query: 419 RLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLKEVV 478
++++ ++D Y L N+YA +WE V +R++MK R+ ++PGC +++ VV
Sbjct: 420 KVSERIFELDDSHGGDYVILSNLYARNKKWEYVDSLRKVMKDRKAVKVPGCSSIEVNNVV 479
Query: 479 EKLKVGHFWRGGMKEEVNKMMECRQSRSLATVSKQL 514
+ F G+K K+ R+L + K+L
Sbjct: 480 HEF----FSGDGVKSATTKL-----HRALDEMVKEL 506
>gi|347954534|gb|AEP33767.1| organelle transcript processing 82, partial [Matthiola incana]
Length = 694
Score = 247 bits (631), Expect = 9e-63, Method: Compositional matrix adjust.
Identities = 146/445 (32%), Positives = 233/445 (52%), Gaps = 53/445 (11%)
Query: 50 PGTFCV--NAVIKAYSNSCVPDQGV-VFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERG 106
PG V NA+I Y + + + +F M+ P+ T V++ +CA++ +E G
Sbjct: 182 PGKDVVSWNAMISGYVETGNYKEALELFKEMMMMTNVRPDESTMVTVVSACAQSDSIELG 241
Query: 107 GMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRS 166
H +G L ++N+LI++Y FG
Sbjct: 242 RHVHSWINDHGFASNLKIVNALIDLYSKFG------------------------------ 271
Query: 167 GDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVL 226
++ A ELFD + ++V+SWN +I GY+ +L LF+EM++SG ND TM S+L
Sbjct: 272 -EVETACELFDGLWNKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSIL 330
Query: 227 TACGRSARFNEGRSVHGYTVRTSLKPNII----LDTALIDLYSKCQKVEVAQRVFDS-MA 281
AC + GR +H Y + LK + L T+LID+Y+KC ++ AQ+VFDS M+
Sbjct: 331 PACAHLGAIDIGRWIHVY-INKKLKGVVTNVSSLQTSLIDMYAKCGDIDAAQQVFDSSMS 389
Query: 282 DRNLVCWNAMILGHCIHGKPEEGIKLFTAL-VNGTVAGGSISPDEITFIGVICACVRAEL 340
+R+L WNAMI G +HG+ +F+ + +NG I PD+ITF+G++ AC + +
Sbjct: 390 NRSLSTWNAMISGFAMHGRANAAFDIFSRMRMNG------IEPDDITFVGLLSACSHSGM 443
Query: 341 LTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIM 400
L GR FR M Y+I P HY CM +L + L +EAEE++ MP + D ++
Sbjct: 444 LDLGRNIFRSMTRGYEITPKLEHYGCMIDLLGHSGLFKEAEEMINTMPMEPDG-----VI 498
Query: 401 WVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKK 460
W SLL C+ G + + E AK + ++P + Y L N+YA AG+W +VA++R L+
Sbjct: 499 WCSLLKACKIHGNLELGESFAKKLIKIEPGNSGSYVLLSNIYAAAGRWNEVAKIRALLND 558
Query: 461 RRM-GRMPGCRLVDLKEVVEKLKVG 484
+ M ++PGC +++ VV + +G
Sbjct: 559 KGMKKKVPGCSSIEIDSVVHEFIIG 583
Score = 207 bits (527), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 118/343 (34%), Positives = 190/343 (55%), Gaps = 10/343 (2%)
Query: 7 IQAHLITSGLFFNNSFWTINLLKH---SADFGSPDYTVLVFKCINNPGTFCVNAVIKAYS 63
I A +I +GL N ++ LL+ S F Y + VF I P N + + ++
Sbjct: 7 IHAQMIKTGLH-NTNYALSKLLEFCVVSPHFDGFPYAISVFDTIQEPNLLIWNTMFRGHA 65
Query: 64 NSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELP 123
S P + YL MI G +P+SYTF L SCAK+ + G HG LK G D ++
Sbjct: 66 LSSDPVSALKLYLVMISLGLLPDSYTFPFLLKSCAKSKIRKEGQQIHGHVLKLGFDLDIY 125
Query: 124 VMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERN 183
V SLI+MY G ++ AR +F S RD++S+ ++++G+V G + +A +LFD +P ++
Sbjct: 126 VHTSLISMYAQNGRLEDARKVFDISSHRDVVSYTALIAGYVSRGYIESAQKLFDEIPGKD 185
Query: 184 VVSWNIMISGYSKSGNPGCSLKLFRE-MMKSGFRGNDKTMASVLTACGRSARFNEGRSVH 242
VVSWN MISGY ++GN +L+LF+E MM + R ++ TM +V++AC +S GR VH
Sbjct: 186 VVSWNAMISGYVETGNYKEALELFKEMMMMTNVRPDESTMVTVVSACAQSDSIELGRHVH 245
Query: 243 GYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPE 302
+ N+ + ALIDLYSK +VE A +FD + +++++ WN +I G+ +
Sbjct: 246 SWINDHGFASNLKIVNALIDLYSKFGEVETACELFDGLWNKDVISWNTLIGGYTHMNLYK 305
Query: 303 EGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGR 345
E + LF ++ +P+++T + ++ AC + GR
Sbjct: 306 EALLLFQEMLR-----SGETPNDVTMLSILPACAHLGAIDIGR 343
Score = 82.8 bits (203), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 71/292 (24%), Positives = 124/292 (42%), Gaps = 37/292 (12%)
Query: 27 LLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPN 86
L+ + FG + +F + N N +I Y++ + + ++ + +M+++G PN
Sbjct: 263 LIDLYSKFGEVETACELFDGLWNKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPN 322
Query: 87 SYTFVSLFGSCAKTGCVERGGMCH---GLALKNGVDFELPVMNSLINMYGCFGAMDCARN 143
T +S+ +CA G ++ G H LK V + SLI+MY G +D A+
Sbjct: 323 DVTMLSILPACAHLGAIDIGRWIHVYINKKLKGVVTNVSSLQTSLIDMYAKCGDIDAAQQ 382
Query: 144 MF-VQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGC 202
+F MS R L +WN+++SG G +AA FDI
Sbjct: 383 VFDSSMSNRSLSTWNAMISGFAMHGRANAA---FDI------------------------ 415
Query: 203 SLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVR-TSLKPNIILDTALI 261
F M +G +D T +L+AC S + GR++ R + P + +I
Sbjct: 416 ----FSRMRMNGIEPDDITFVGLLSACSHSGMLDLGRNIFRSMTRGYEITPKLEHYGCMI 471
Query: 262 DLYSKCQKVEVAQRVFDSMA-DRNLVCWNAMILGHCIHGKPEEGIKLFTALV 312
DL + A+ + ++M + + V W +++ IHG E G L+
Sbjct: 472 DLLGHSGLFKEAEEMINTMPMEPDGVIWCSLLKACKIHGNLELGESFAKKLI 523
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 47/227 (20%), Positives = 97/227 (42%), Gaps = 25/227 (11%)
Query: 239 RSVHGYTVRTSLKPNIILDTALIDLYSKC------QKVEVAQRVFDSMADRNLVCWNAMI 292
R +H ++T L + AL L C A VFD++ + NL+ WN M
Sbjct: 5 RXIHAQMIKTGLHNT---NYALSKLLEFCVVSPHFDGFPYAISVFDTIQEPNLLIWNTMF 61
Query: 293 LGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMI 352
GH + P +KL+ +++ + PD TF ++ +C ++++ EG++ ++
Sbjct: 62 RGHALSSDPVSALKLYLVMISL-----GLLPDSYTFPFLLKSCAKSKIRKEGQQIHGHVL 116
Query: 353 DFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQG 412
+ H + ++YA E+A ++ D S + VS +L
Sbjct: 117 KLGFDLDIYVHT-SLISMYAQNGRLEDARKVF-------DISSHRDV--VSYTALIAGYV 166
Query: 413 AVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARV-RELM 458
+ +E K F ++ +D + +++ Y G +++ + +E+M
Sbjct: 167 SRGYIESAQKLFDEIPGKDVVSWNAMISGYVETGNYKEALELFKEMM 213
>gi|449442481|ref|XP_004139010.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g04840-like [Cucumis sativus]
gi|449505311|ref|XP_004162432.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g04840-like [Cucumis sativus]
Length = 679
Score = 247 bits (631), Expect = 9e-63, Method: Compositional matrix adjust.
Identities = 154/548 (28%), Positives = 261/548 (47%), Gaps = 48/548 (8%)
Query: 3 QLLQIQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAY 62
+L QI L +F ++S + + S DY + +F+ ++ NA+I+
Sbjct: 57 KLRQIHGQLYRCNVF-SSSRVVTQFISSCSSLNSVDYAISIFQRFELKNSYLFNALIRGL 115
Query: 63 SNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFEL 122
+ + + + F++ M+K P+ TF + S A G H LK G++F+
Sbjct: 116 AENSRFESSISFFVLMLKWKISPDRLTFPFVLKSAAALSNGGVGRALHCGILKFGLEFDS 175
Query: 123 PVMNSLINMY----------------------------------GC-FGAMDCARNMFVQ 147
V SL++MY C G + A +F
Sbjct: 176 FVRVSLVDMYVKVEELGSALKVFDESPESVKNGSVLIWNVLIHGYCRMGDLVKATELFDS 235
Query: 148 MSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLF 207
M +D SWNS+++G ++ GDM A ELF MPE+NVVSW M++G+S++G+P +L+ F
Sbjct: 236 MPKKDTGSWNSLINGFMKMGDMGRAKELFVKMPEKNVVSWTTMVNGFSQNGDPEKALETF 295
Query: 208 REMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKC 267
M++ G R ND T+ S L+AC + + G +H Y K N+++ TAL+D+Y+KC
Sbjct: 296 FCMLEEGARPNDYTIVSALSACAKIGALDAGLRIHNYLSGNGFKLNLVIGTALVDMYAKC 355
Query: 268 QKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTAL-VNGTVAGGSISPDEI 326
+E A++VF ++ L+ W+ MI G IHG + ++ F + GT PD +
Sbjct: 356 GNIEHAEKVFHETKEKGLLIWSVMIWGWAIHGHFRKALQYFEWMKFTGT------KPDSV 409
Query: 327 TFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRK 386
F+ V+ AC + + EG K+F M Y I+P+ HY + ++ A +EA + +R
Sbjct: 410 VFLAVLNACSHSGQVNEGLKFFDNMRRGYLIEPSMKHYTLVVDMLGRAGRLDEALKFIRA 469
Query: 387 MPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAG 446
MP ++ + ++W +L CR V M E +K + ++P+ Y FL N YA G
Sbjct: 470 MP-----ITPDFVVWGALFCACRTHKNVEMAELASKKLLQLEPKHPGSYVFLSNAYASVG 524
Query: 447 QWEDVARVRELMKKRRMGRMPGCRLVDLKEVVEKLKVGHFWRGGMKEEVNKMMECRQSRS 506
+W+D RVR M+ + PG +++ + + G E +K+ E S
Sbjct: 525 RWDDAERVRVSMRDHGAHKDPGWSFIEVDHKLHRFVAGDNTHNRAVEIYSKLDEISASAR 584
Query: 507 LATVSKQL 514
+K++
Sbjct: 585 EKGYTKEI 592
>gi|449481169|ref|XP_004156102.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g23330-like [Cucumis sativus]
Length = 642
Score = 247 bits (631), Expect = 9e-63, Method: Compositional matrix adjust.
Identities = 138/391 (35%), Positives = 214/391 (54%), Gaps = 14/391 (3%)
Query: 88 YTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQ 147
+TF + S + V G HGL L+ G+ F+L V SLI +YG G ++ A +F
Sbjct: 135 FTFPFVLKSSVELLSVWMGKCVHGLILRIGLQFDLYVATSLIILYGKCGEINDAGKVFDN 194
Query: 148 MSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLF 207
M+ RD+ SWN++++G+ +SG + AA +F+ MP RN+VSW MISGYS+SG +L LF
Sbjct: 195 MTIRDVSSWNALLAGYTKSGCIDAALAIFERMPWRNIVSWTTMISGYSQSGLAQQALSLF 254
Query: 208 REMMK--SGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYS 265
EM+K SG R N T+ SVL AC + + GR +H R L N + AL +Y+
Sbjct: 255 DEMVKEDSGVRPNWVTIMSVLPACAQLSTLERGRQIHELACRMGLNSNASVLIALTAMYA 314
Query: 266 KCQKVEVAQRVFDSM--ADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISP 323
KC + A+ FD + ++NL+ WN MI + +G + + F ++ I P
Sbjct: 315 KCGSLVDARNCFDKLNRNEKNLIAWNTMITAYASYGHGLQAVSTFREMIQ-----AGIQP 369
Query: 324 DEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEI 383
D+ITF G++ C + L+ G KYF M Y I P HY C+A+L A EA ++
Sbjct: 370 DDITFTGLLSGCSHSGLVDVGLKYFNHMSTTYSINPRVEHYACVADLLGRAGRLAEASKL 429
Query: 384 LRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYA 443
+ +MP M +W SLL+ CR + M E A+ ++P++ Y L N+YA
Sbjct: 430 VGEMP-----MPAGPSIWGSLLAACRKHRNLEMAETAARKLFVLEPENTGNYVLLSNMYA 484
Query: 444 VAGQWEDVARVRELMKKRRMGRMPGCRLVDL 474
AG+W++V ++R ++K + + PGC +++
Sbjct: 485 EAGRWQEVDKLRAIVKSQGTKKSPGCSWIEI 515
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 56/230 (24%), Positives = 104/230 (45%), Gaps = 36/230 (15%)
Query: 56 NAVIKAYSNSCVPDQGVVFYLQMIK--NGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLA 113
+I YS S + Q + + +M+K +G PN T +S+ +CA+ +ERG H LA
Sbjct: 235 TTMISGYSQSGLAQQALSLFDEMVKEDSGVRPNWVTIMSVLPACAQLSTLERGRQIHELA 294
Query: 114 LKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQM--SPRDLISWNSIVSGHVRSGDMSA 171
+ G++ V+ +L MY G++ ARN F ++ + ++LI+WN+
Sbjct: 295 CRMGLNSNASVLIALTAMYAKCGSLVDARNCFDKLNRNEKNLIAWNT------------- 341
Query: 172 AHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGR 231
MI+ Y+ G+ ++ FREM+++G + +D T +L+ C
Sbjct: 342 ------------------MITAYASYGHGLQAVSTFREMIQAGIQPDDITFTGLLSGCSH 383
Query: 232 SARFNEGRSVHGYTVRT-SLKPNIILDTALIDLYSKCQKVEVAQRVFDSM 280
S + G + T S+ P + + DL + ++ A ++ M
Sbjct: 384 SGLVDVGLKYFNHMSTTYSINPRVEHYACVADLLGRAGRLAEASKLVGEM 433
>gi|225449732|ref|XP_002267472.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g02750-like [Vitis vinifera]
Length = 1058
Score = 247 bits (631), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 150/475 (31%), Positives = 234/475 (49%), Gaps = 42/475 (8%)
Query: 32 ADFGSPDYTVLVFKCINNPGTFCVNAVIKAYS-NSCVPDQGVVFYLQMIKN--------- 81
A G L+F I NP NA+I Y+ N + + +F +KN
Sbjct: 469 AQVGRIQKARLIFDEILNPNVVAWNAIIAGYTQNGMLKEAKDLFQKMPVKNSASWAAMIA 528
Query: 82 ---------------------GFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDF 120
G +P+ +F S +CA G VE G + H LA+K G F
Sbjct: 529 GFVQNEESREALELLIELHRSGSVPSDSSFTSALSACANIGDVEIGRVIHSLAIKTGCQF 588
Query: 121 ELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMP 180
VMN LI+MY G ++ ++F + +D +SWNS++SG + + A +F+ MP
Sbjct: 589 NSYVMNGLISMYAKCGNVEDGSHVFRTIRVKDTVSWNSLISGLSENYMLDDARVVFEKMP 648
Query: 181 ERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRS 240
+R+VVSW +IS Y ++G+ +L LF +M+ G + N T+ S+L+ACG G
Sbjct: 649 KRDVVSWTAIISAYVQAGHGEVALDLFLDMLARGIKPNQLTVTSLLSACGNLGAIKLGEQ 708
Query: 241 VHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGK 300
H + + + +LI +Y KC E VF+ M + +L+ WNA+++G +G
Sbjct: 709 FHALIFKLGFDTFLFVGNSLITMYFKC-GYEDGFCVFEEMPEHDLITWNAVLVGCAQNGL 767
Query: 301 PEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPN 360
+E IK+F + V G I PD+++F+GV+CAC A L+ EG +F M Y I P
Sbjct: 768 GKEAIKIFEQM---EVEG--ILPDQMSFLGVLCACSHAGLVDEGWAHFNSMTQKYGIMPL 822
Query: 361 FAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERL 420
HY CM +L A EAE ++ MP D S++W +LL CR V + +R+
Sbjct: 823 VYHYTCMVDLLGRAGYLSEAEALIENMPVKPD-----SVIWEALLGACRIHRNVELGQRV 877
Query: 421 AKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLK 475
A+ M + Y L N++A G W+ VA +R+LMK + + + PG + +K
Sbjct: 878 AERLFQMTKPKSATYVLLSNLFASQGMWDKVAEIRKLMKDQGLTKEPGISWIQVK 932
Score = 120 bits (301), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 87/352 (24%), Positives = 168/352 (47%), Gaps = 30/352 (8%)
Query: 56 NAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERG-GMCHGLAL 114
N++I YS + D+ + + + N T+ L AK G +E + +
Sbjct: 206 NSMINGYSQNGKVDEARLLFDAFVGK----NIRTWTILLTGYAKEGRIEEAREVFESMTE 261
Query: 115 KNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHE 174
+N V + N++I+ Y G + AR +F +M +++ SWNS+V+G+ MS A E
Sbjct: 262 RNVVSW-----NAMISGYVQNGDLKNARKLFDEMPEKNVASWNSVVTGYCHCYRMSEARE 316
Query: 175 LFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSAR 234
LFD MPERN VSW +MISGY + + +F +M ++ R + VL+A
Sbjct: 317 LFDQMPERNSVSWMVMISGYVHISDYWEAWDVFVKMCRTVARPDQSIFVVVLSAITGLDD 376
Query: 235 FNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILG 294
S+ ++T + ++++ +A+++ Y++ +++A F++M +RN W MI
Sbjct: 377 LELIGSLRPIAIKTGYEGDVVVGSAILNAYTRNGSLDLAMHFFETMPERNEYSWTTMIAA 436
Query: 295 HCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDF 354
G+ ++ I+L+ + TVA T ++ A + + + R F ++++
Sbjct: 437 FAQCGRLDDAIQLYERVPEQTVA---------TKTAMMTAYAQVGRIQKARLIFDEILN- 486
Query: 355 YKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLS 406
PN + + Y + +EA+++ +KMP N S W ++++
Sbjct: 487 ----PNVVAWNAIIAGYTQNGMLKEAKDLFQKMPVKN------SASWAAMIA 528
Score = 113 bits (283), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 72/306 (23%), Positives = 145/306 (47%), Gaps = 34/306 (11%)
Query: 56 NAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALK 115
+A++ AY+ + D + F+ M + N Y++ ++ + A+ G ++ + +
Sbjct: 400 SAILNAYTRNGSLDLAMHFFETMPER----NEYSWTTMIAAFAQCGRLDDAIQLYERVPE 455
Query: 116 NGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHEL 175
V + +M + Y G + AR +F ++ ++++WN+I++G+ ++G + A +L
Sbjct: 456 QTVATKTAMMTA----YAQVGRIQKARLIFDEILNPNVVAWNAIIAGYTQNGMLKEAKDL 511
Query: 176 FDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARF 235
F MP +N SW MI+G+ ++ +L+L E+ +SG +D + S L+AC
Sbjct: 512 FQKMPVKNSASWAAMIAGFVQNEESREALELLIELHRSGSVPSDSSFTSALSACANIGDV 571
Query: 236 NEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGH 295
GR +H ++T + N + LI +Y+KC VE VF ++ ++ V WN++I G
Sbjct: 572 EIGRVIHSLAIKTGCQFNSYVMNGLISMYAKCGNVEDGSHVFRTIRVKDTVSWNSLISGL 631
Query: 296 -----------CIHGKPEEGIKLFTALVNGTVAGG---------------SISPDEITFI 329
P+ + +TA+++ V G I P+++T
Sbjct: 632 SENYMLDDARVVFEKMPKRDVVSWTAIISAYVQAGHGEVALDLFLDMLARGIKPNQLTVT 691
Query: 330 GVICAC 335
++ AC
Sbjct: 692 SLLSAC 697
Score = 85.5 bits (210), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 56/209 (26%), Positives = 105/209 (50%), Gaps = 13/209 (6%)
Query: 126 NSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVV 185
N+ I G G ++ AR +F +M RD++SWNS+++G+ ++G + A LFD +N+
Sbjct: 175 NTRIQELGRLGRVEEARRVFNEMIQRDVVSWNSMINGYSQNGKVDEARLLFDAFVGKNIR 234
Query: 186 SWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYT 245
+W I+++GY+K G ++ RE+ +S N + ++++ ++ R +
Sbjct: 235 TWTILLTGYAKEGR----IEEAREVFESMTERNVVSWNAMISGYVQNGDLKNARKLFDEM 290
Query: 246 VRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGI 305
+ N+ +++ Y C ++ A+ +FD M +RN V W MI G+ E
Sbjct: 291 P----EKNVASWNSVVTGYCHCYRMSEARELFDQMPERNSVSWMVMISGYVHISDYWEAW 346
Query: 306 KLFTALVNGTVAGGSISPDEITFIGVICA 334
+F + TVA PD+ F+ V+ A
Sbjct: 347 DVFVKMCR-TVA----RPDQSIFVVVLSA 370
Score = 76.3 bits (186), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 103/434 (23%), Positives = 161/434 (37%), Gaps = 115/434 (26%)
Query: 7 IQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAYS-NS 65
I + I +G FN S+ L+ A G+ + VF+ I T N++I S N
Sbjct: 577 IHSLAIKTGCQFN-SYVMNGLISMYAKCGNVEDGSHVFRTIRVKDTVSWNSLISGLSENY 635
Query: 66 CVPDQGVVF------------------------------YLQMIKNGFMPNSYTFVSLFG 95
+ D VVF +L M+ G PN T SL
Sbjct: 636 MLDDARVVFEKMPKRDVVSWTAIISAYVQAGHGEVALDLFLDMLARGIKPNQLTVTSLLS 695
Query: 96 SCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMD--CARNMFVQMSPRDL 153
+C G ++ G H L K G D L V NSLI MY G D C +F +M DL
Sbjct: 696 ACGNLGAIKLGEQFHALIFKLGFDTFLFVGNSLITMYFKCGYEDGFC---VFEEMPEHDL 752
Query: 154 ISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKS 213
I+WN+++ G ++G A +K+F +M
Sbjct: 753 ITWNAVLVGCAQNGLGKEA-------------------------------IKIFEQMEVE 781
Query: 214 GFRGNDKTMASVLTACGRSARFNEGRS-VHGYTVRTSLKPNIILDTALIDLYSKCQKVEV 272
G + + VL AC + +EG + + T + + P + T ++DL + +
Sbjct: 782 GILPDQMSFLGVLCACSHAGLVDEGWAHFNSMTQKYGIMPLVYHYTCMVDLLGRAGYLSE 841
Query: 273 AQRVFDSMADR-NLVCWNAMILGHC-IHGKPEEGIKLFTALVNGTVAGGSISPDEITFIG 330
A+ + ++M + + V W A+ LG C IH E G ++
Sbjct: 842 AEALIENMPVKPDSVIWEAL-LGACRIHRNVELGQRV----------------------- 877
Query: 331 VICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPED 390
AE L F KP A Y ++NL+A + ++ EI RK+ +D
Sbjct: 878 -------AERL------------FQMTKPKSATYVLLSNLFASQGMWDKVAEI-RKLMKD 917
Query: 391 NDNMSFESIMWVSL 404
I W+ +
Sbjct: 918 QGLTKEPGISWIQV 931
>gi|357120906|ref|XP_003562165.1| PREDICTED: pentatricopeptide repeat-containing protein At2g42920,
chloroplastic-like [Brachypodium distachyon]
Length = 529
Score = 247 bits (631), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 153/490 (31%), Positives = 238/490 (48%), Gaps = 20/490 (4%)
Query: 1 MKQLLQIQAHLITSGLFFNNSFWTINLLKHSADFGSP-DYTVLVFKCINNPGTFCVNAVI 59
M +L Q+ L+ SGL + ++ A G Y + + P F N I
Sbjct: 49 MARLRQLHGALVKSGLA-KDPIAASRVVAFLAGKGRDVAYAARLVRHHPRPNAFMWNTAI 107
Query: 60 KAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVE----RGGMCHGLALK 115
+A S+ PD V +L M+++ P TF SLF S A+ G G HG+ LK
Sbjct: 108 RALSDGPGPDAAVALFLDMLRSPTPPERRTFPSLFASYARLGVRADDDGAGAALHGMVLK 167
Query: 116 NGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPR-DLISWNSIVSGHVRSGDMSAAHE 174
G+ + V NS+I MY +G D A ++ Q D+++ NS + R+G + A E
Sbjct: 168 LGLAGDAYVRNSMIAMYASWGRADEALLLYGQCGQAFDVVACNSAIVALTRAGRVDEARE 227
Query: 175 LFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSAR 234
+FD MP R V +W+ M+S YS++ +++LF M SG N + SVL C
Sbjct: 228 VFDAMPARTVATWSAMVSAYSRAARCQDAVELFSAMQASGVEPNANVLVSVLGCCAALGA 287
Query: 235 FNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLV---CWNAM 291
+G VH Y + + N ++ TAL+D+Y KC + A+ VFD+ + L WNAM
Sbjct: 288 LEQGAWVHAYIDKHGVAMNALVVTALVDMYCKCGSIHKARHVFDASRSQGLAKLSSWNAM 347
Query: 292 ILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQM 351
+LG +HG+ +E + LF+ L +SPD +TFI ++ A + + E + F M
Sbjct: 348 MLGLAVHGQCQEALALFSELET-----YGLSPDNVTFITILMAYGHSGMADEAKALFSAM 402
Query: 352 IDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQ 411
Y + P HY C+ + A A EAE+++R MP M ++ +W +LLS CR
Sbjct: 403 EREYAVTPGIEHYGCLVDALARAGRLGEAEDVIRTMP-----MRPDTAIWGALLSGCRLH 457
Query: 412 GAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRL 471
G R A ++ DPQD Y +V A G+ VRE M+ + ++PGC +
Sbjct: 458 GDAEAGARAASGAMECDPQDSGAYVLAASVLARDGEVGAGVSVRERMRVEGVAKVPGCSM 517
Query: 472 VDLKEVVEKL 481
+++ VV +
Sbjct: 518 IEVNGVVHEF 527
>gi|326509777|dbj|BAJ87104.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 624
Score = 247 bits (631), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 141/480 (29%), Positives = 251/480 (52%), Gaps = 15/480 (3%)
Query: 6 QIQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSNS 65
++ A ++ GL + + L + A G D+++ + +P T + I A+S+
Sbjct: 42 ELHAAVVRKGLDSDRAV-AFRLQRAYAASGRLDHSLTLLGRTKDPTTIFYTSAIHAHSSR 100
Query: 66 CVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVM 125
+ G+ M+ G +P ++T + +C + G H A K + + V
Sbjct: 101 GLHLPGLALLSDMLSEGLLPTAHTLSASLPACRG---LSLGRALHAYAFKLALSGDSYVA 157
Query: 126 NSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVV 185
+L++MY G AR +F +M ++S ++++ + G + A LFD +P ++ +
Sbjct: 158 TALLSMYARAGDAAAARALFDEMPDPHVVSVTAMLTCYANMGALDDARRLFDGLPRKDFI 217
Query: 186 SWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYT 245
WN MI GY++ G P +L+LFR M++S ++ T+ VL+A + G+ +H Y
Sbjct: 218 CWNAMIDGYTQHGKPNEALQLFRRMLRSSAEPDEVTVVLVLSAVAQLGTVESGKWLHSYV 277
Query: 246 VRTS-LKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEG 304
+ ++ N+ + TAL+D+Y KC +E A VF + ++++V WNAMI G+ +HG +
Sbjct: 278 KNSRCVQLNVRVATALVDMYCKCGSLEDAVAVFHGIGNKDIVVWNAMINGYAMHGDSRKA 337
Query: 305 IKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHY 364
+++F L + + P +ITFIG++ AC + L+ EGR +F+ M Y I P HY
Sbjct: 338 LEMFVQLRD-----QGLWPTDITFIGLLNACSHSGLVEEGRSFFQSMEHEYGIDPKIEHY 392
Query: 365 WCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSF 424
CM +L A L EEA +++ + ++ +++MWVSLL+ CR +A+ +R+A
Sbjct: 393 GCMVDLLGRAGLIEEAFHLVQSL-----TITPDAVMWVSLLAACRLHKNMALGQRIADFL 447
Query: 425 VDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLKEVVEKLKVG 484
V + Y L N+YA G+WE+VARVR +MK + + PGC +++ V + G
Sbjct: 448 VANGLANSGMYILLSNIYAAVGKWEEVARVRSMMKASGIQKEPGCSAIEIDRKVYEFVAG 507
>gi|356551361|ref|XP_003544044.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g02330-like [Glycine max]
Length = 688
Score = 247 bits (630), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 134/462 (29%), Positives = 234/462 (50%), Gaps = 15/462 (3%)
Query: 56 NAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALK 115
N++I Y + + D+ + ++K G P+S+T S+ CA + RG H LA+
Sbjct: 238 NSMISGYVDGSLFDEAYSLFRDLLKEGIEPDSFTLGSVLAGCADMASIRRGKEAHSLAIV 297
Query: 116 NGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHEL 175
G+ V +L+ MY + A+ F +S RDL +WN+++SG+ R EL
Sbjct: 298 RGLQSNSIVGGALVEMYSKCQDIVAAQMAFDGVSERDLPTWNALISGYARCNQAEKIREL 357
Query: 176 FDIMP----ERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGR 231
M E NV +WN +I+GY ++ +++LF EM + R + T+ +L AC R
Sbjct: 358 HQKMRRDGFEPNVYTWNGIIAGYVENKQYDSAMQLFTEMQIANLRPDIYTVGIILAACSR 417
Query: 232 SARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAM 291
A G+ VH Y++R ++ + AL+D+Y+KC V+ RV++ +++ NLV NAM
Sbjct: 418 LATIQRGKQVHAYSIRAGHDSDVHIGAALVDMYAKCGDVKHCYRVYNMISNPNLVSHNAM 477
Query: 292 ILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQM 351
+ + +HG EEGI LF ++ + PD +TF+ V+ +CV A L G + M
Sbjct: 478 LTAYAMHGHGEEGIALFRRML-----ASKVRPDHVTFLAVLSSCVHAGSLEIGHECLALM 532
Query: 352 IDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQ 411
+ Y + P+ HY CM +L + A EA E+++ +P + D ++ W +LL C
Sbjct: 533 VA-YNVMPSLKHYTCMVDLLSRAGQLYEAYELIKNLPTEAD-----AVTWNALLGGCFIH 586
Query: 412 GAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRL 471
V + E A+ ++++P + Y L N+YA AG+W + + R+LMK M + PGC
Sbjct: 587 NEVDLGEIAAEKLIELEPNNPGNYVMLANLYASAGKWHYLTQTRQLMKDMGMQKRPGCSW 646
Query: 472 VDLKEVVEKLKVGHFWRGGMKEEVNKMMECRQSRSLATVSKQ 513
++ ++ + + +E + + +++ L Q
Sbjct: 647 IEDRDGIHVFVAKDIYHTSTSKEDSFDLSVKKTHFLGMTMTQ 688
Score = 129 bits (323), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 98/362 (27%), Positives = 162/362 (44%), Gaps = 31/362 (8%)
Query: 6 QIQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSNS 65
Q+ AH I SG F + F T LL+ A S + VF + A+++ Y
Sbjct: 69 QLHAHSIKSG-FNAHEFVTTKLLQMYARNCSFENACHVFDTMPLRNLHSWTALLRVYIEM 127
Query: 66 CVPDQGVVFYLQMIKNGFMP--NSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELP 123
++ + Q++ G + + F + C VE G HG+ALK+
Sbjct: 128 GFFEEAFFLFEQLLYEGVRVRLDFFVFPVVLKICCGLCAVELGRQMHGMALKHD------ 181
Query: 124 VMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERN 183
G M A MF + S + S+N++++G+ +G++ A ELFD M +
Sbjct: 182 ------------GDMKSAFEMFSRFSRKSAASYNAMIAGYWENGNLFKAKELFDRMEQEG 229
Query: 184 V----VSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGR 239
V +SWN MISGY + LFR+++K G + T+ SVL C A G+
Sbjct: 230 VQKDRISWNSMISGYVDGSLFDEAYSLFRDLLKEGIEPDSFTLGSVLAGCADMASIRRGK 289
Query: 240 SVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHG 299
H + L+ N I+ AL+++YSKCQ + AQ FD +++R+L WNA+I G+
Sbjct: 290 EAHSLAIVRGLQSNSIVGGALVEMYSKCQDIVAAQMAFDGVSERDLPTWNALISGYARCN 349
Query: 300 KPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKP 359
+ E+ +L + P+ T+ G+I V + + F +M ++P
Sbjct: 350 QAEKIRELHQKMRR-----DGFEPNVYTWNGIIAGYVENKQYDSAMQLFTEM-QIANLRP 403
Query: 360 NF 361
+
Sbjct: 404 DI 405
Score = 86.3 bits (212), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 53/256 (20%), Positives = 113/256 (44%), Gaps = 32/256 (12%)
Query: 50 PGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMC 109
P + N +I Y + D + + +M P+ YT + +C++ ++RG
Sbjct: 368 PNVYTWNGIIAGYVENKQYDSAMQLFTEMQIANLRPDIYTVGIILAACSRLATIQRGKQV 427
Query: 110 HGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDM 169
H +++ G D ++ + +L++MY + GD+
Sbjct: 428 HAYSIRAGHDSDVHIGAALVDMYA-------------------------------KCGDV 456
Query: 170 SAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTAC 229
+ +++++ N+VS N M++ Y+ G+ + LFR M+ S R + T +VL++C
Sbjct: 457 KHCYRVYNMISNPNLVSHNAMLTAYAMHGHGEEGIALFRRMLASKVRPDHVTFLAVLSSC 516
Query: 230 GRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSM-ADRNLVCW 288
+ G V ++ P++ T ++DL S+ ++ A + ++ + + V W
Sbjct: 517 VHAGSLEIGHECLALMVAYNVMPSLKHYTCMVDLLSRAGQLYEAYELIKNLPTEADAVTW 576
Query: 289 NAMILGHCIHGKPEEG 304
NA++ G IH + + G
Sbjct: 577 NALLGGCFIHNEVDLG 592
Score = 55.8 bits (133), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 43/187 (22%), Positives = 85/187 (45%), Gaps = 9/187 (4%)
Query: 32 ADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFV 91
A G + V+ I+NP NA++ AY+ ++G+ + +M+ + P+ TF+
Sbjct: 451 AKCGDVKHCYRVYNMISNPNLVSHNAMLTAYAMHGHGEEGIALFRRMLASKVRPDHVTFL 510
Query: 92 SLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQM-SP 150
++ SC G +E G C L + V L ++++ G + A + + +
Sbjct: 511 AVLSSCVHAGSLEIGHECLALMVAYNVMPSLKHYTCMVDLLSRAGQLYEAYELIKNLPTE 570
Query: 151 RDLISWNSIVSG-----HVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLK 205
D ++WN+++ G V G++ AA +L ++ P N +M++ S L
Sbjct: 571 ADAVTWNALLGGCFIHNEVDLGEI-AAEKLIELEP--NNPGNYVMLANLYASAGKWHYLT 627
Query: 206 LFREMMK 212
R++MK
Sbjct: 628 QTRQLMK 634
Score = 45.8 bits (107), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 40/72 (55%), Gaps = 3/72 (4%)
Query: 221 TMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSM 280
T AS+L +CG G+ +H +++++ + + T L+ +Y++ E A VFD+M
Sbjct: 53 TYASILDSCGSPIL---GKQLHAHSIKSGFNAHEFVTTKLLQMYARNCSFENACHVFDTM 109
Query: 281 ADRNLVCWNAMI 292
RNL W A++
Sbjct: 110 PLRNLHSWTALL 121
>gi|449479601|ref|XP_004155648.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g33760-like [Cucumis sativus]
Length = 663
Score = 247 bits (630), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 148/510 (29%), Positives = 260/510 (50%), Gaps = 47/510 (9%)
Query: 1 MKQLLQIQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIK 60
++ L Q+ AH+I SGL + S T L+ GS Y +F + NP +F ++++K
Sbjct: 104 LRNLQQVHAHIIVSGLHRSRSLLT-KLISLVCTAGSITYARRLFPTVPNPDSFLFDSLLK 162
Query: 61 AYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDF 120
S V+FY +M+ +G ++YTF S+ +CA + G H + G
Sbjct: 163 VTSKFGFSIDTVLFYRRMLFSGAPQSNYTFTSVIKACADLSALRLGKEIHSHVMVCGYGS 222
Query: 121 ELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMP 180
++ V +LI +Y ++ DM A ++FD MP
Sbjct: 223 DMYVQAALIALYA-------------------------------KASDMKVAKKVFDAMP 251
Query: 181 ERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRS 240
+R +++WN +ISGY ++G P S+ LF MM+SGF+ + T+ S+L++C + + G
Sbjct: 252 QRTIIAWNSLISGYDQNGLPQESIGLFHLMMESGFQPDSATIVSLLSSCSQLGALDFGCW 311
Query: 241 VHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGK 300
+H Y N++L T+LI++Y++C V A+ VFDSM +RN+V W AMI G+ +HG
Sbjct: 312 LHDYADGNGFDLNVVLGTSLINMYTRCGNVSKAREVFDSMKERNVVTWTAMISGYGMHGY 371
Query: 301 PEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPN 360
+ ++LFT + A G P+ ITF+ V+ AC + L+ +GR+ F M + Y + P
Sbjct: 372 GRQAMELFTEM----RAYGP-RPNNITFVAVLSACAHSGLIDDGRRVFSSMKEAYGLVPG 426
Query: 361 FAHYWCMANLYAGAELTEEAEEILRK-MPEDNDNMSFESIMWVSLLSLCRFQGAVAMVER 419
H CM +++ A L +A + ++K +P++ +W S+L CR + +
Sbjct: 427 VEHNVCMVDMFGRAGLLNDAYQFIKKFIPKEPG-----PAVWTSMLGACRMHRNFDLGVK 481
Query: 420 LAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLKEVVE 479
+A+ + ++P++ Y L N+YA+AG+ + V VR +M +RR+ + G +++
Sbjct: 482 VAEHVLSVEPENPGHYVMLSNIYALAGRMDRVEMVRNMMTRRRLKKQVGYSTIEINRKTY 541
Query: 480 KLKVG---HFWRGGMKEEVNKMMECRQSRS 506
+G H + ++++M CR S S
Sbjct: 542 LFSMGDKSHPQTNTIYRYLDELM-CRCSES 570
>gi|449434342|ref|XP_004134955.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g33760-like [Cucumis sativus]
Length = 599
Score = 247 bits (630), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 148/510 (29%), Positives = 260/510 (50%), Gaps = 47/510 (9%)
Query: 1 MKQLLQIQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIK 60
++ L Q+ AH+I SGL + S T L+ GS Y +F + NP +F ++++K
Sbjct: 40 LRNLQQVHAHIIVSGLHRSRSLLT-KLISLVCTAGSITYARRLFPTVPNPDSFLFDSLLK 98
Query: 61 AYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDF 120
S V+FY +M+ +G ++YTF S+ +CA + G H + G
Sbjct: 99 VTSKFGFSIDTVLFYRRMLFSGAPQSNYTFTSVIKACADLSALRLGKEIHSHVMVCGYGS 158
Query: 121 ELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMP 180
++ V +LI +Y ++ DM A ++FD MP
Sbjct: 159 DMYVQAALIALYA-------------------------------KASDMKVAKKVFDAMP 187
Query: 181 ERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRS 240
+R +++WN +ISGY ++G P S+ LF MM+SGF+ + T+ S+L++C + + G
Sbjct: 188 QRTIIAWNSLISGYDQNGLPQESIGLFHLMMESGFQPDSATIVSLLSSCSQLGALDFGCW 247
Query: 241 VHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGK 300
+H Y N++L T+LI++Y++C V A+ VFDSM +RN+V W AMI G+ +HG
Sbjct: 248 LHDYADGNGFDLNVVLGTSLINMYTRCGNVSKAREVFDSMKERNVVTWTAMISGYGMHGY 307
Query: 301 PEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPN 360
+ ++LFT + A G P+ ITF+ V+ AC + L+ +GR+ F M + Y + P
Sbjct: 308 GRQAMELFTEM----RAYGP-RPNNITFVAVLSACAHSGLIDDGRRVFSSMKEAYGLVPG 362
Query: 361 FAHYWCMANLYAGAELTEEAEEILRK-MPEDNDNMSFESIMWVSLLSLCRFQGAVAMVER 419
H CM +++ A L +A + ++K +P++ +W S+L CR + +
Sbjct: 363 VEHNVCMVDMFGRAGLLNDAYQFIKKFIPKEPG-----PAVWTSMLGACRMHRNFDLGVK 417
Query: 420 LAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLKEVVE 479
+A+ + ++P++ Y L N+YA+AG+ + V VR +M +RR+ + G +++
Sbjct: 418 VAEHVLSVEPENPGHYVMLSNIYALAGRMDRVEMVRNMMTRRRLKKQVGYSTIEINRKTY 477
Query: 480 KLKVG---HFWRGGMKEEVNKMMECRQSRS 506
+G H + ++++M CR S S
Sbjct: 478 LFSMGDKSHPQTNTIYRYLDELM-CRCSES 506
>gi|225446273|ref|XP_002266689.1| PREDICTED: pentatricopeptide repeat-containing protein At2g34400
[Vitis vinifera]
gi|296090299|emb|CBI40118.3| unnamed protein product [Vitis vinifera]
Length = 618
Score = 247 bits (630), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 144/461 (31%), Positives = 235/461 (50%), Gaps = 42/461 (9%)
Query: 43 VFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGC 102
VF I+ N++I YS V + +M GF P+ T VS+ G+C G
Sbjct: 183 VFDEISEKDLVSWNSMISGYSRMGYAGDAVGLFGEMRDAGFEPDEMTLVSILGACGDLGD 242
Query: 103 VERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSG 162
+ G G ++N +D V ++LI MYG
Sbjct: 243 LGLGSWIEGFVVENEMDLNSFVGSALIGMYG----------------------------- 273
Query: 163 HVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTM 222
+ GD+S+A +FD M +++VV+WN MI+GY+++G ++ LF M +SG + T+
Sbjct: 274 --KCGDLSSARRVFDRMVKKDVVTWNAMITGYAQNGVSDEAIILFSGMRESGVNPDKITL 331
Query: 223 ASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMAD 282
VL+AC + G+ + Y L+ +I + TALID+Y+KC ++ A RVF+ M
Sbjct: 332 VGVLSACASIGALDFGKWLDTYASERGLQNDIYVSTALIDMYAKCGSLDDALRVFEDMPQ 391
Query: 283 RNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLT 342
+N V WNAMI HG+P+E + LF + + GG++ P++I+FIGV+ ACV A L+
Sbjct: 392 KNEVSWNAMISALAFHGRPQESLSLFKRM---SKEGGAVRPNDISFIGVLSACVHAGLVD 448
Query: 343 EGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWV 402
EGR+ F M + + P H+ CM +L A A EA + + KMPE D ++
Sbjct: 449 EGRQLFDLMSSSFGLVPKIEHHSCMVDLLARAGHVHEAWDFIEKMPEKPD-----EVVLG 503
Query: 403 SLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRR 462
+LL C+ + V + ER+ ++M+P + Y ++A +W+D AR+R LM++R
Sbjct: 504 ALLGACQKRRNVDVSERVMHMLLEMEPLNSGNYIISSKIFANMKRWDDSARMRVLMRQRG 563
Query: 463 MGRMPGCRLVDLKEVVEKLKVG---HFWRGGMKEEVNKMME 500
+ + PGC ++++ V + G HF M + +N + E
Sbjct: 564 VTKTPGCSWIEIENQVHEFHAGDVLHFISQDMCQVINLLNE 604
Score = 177 bits (449), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 122/437 (27%), Positives = 203/437 (46%), Gaps = 53/437 (12%)
Query: 2 KQLLQIQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKA 61
K L QI +I + + N LL D + L+F I P + N +I+
Sbjct: 45 KSLQQIHTQMIINAIHKPNF-----LLHRFIDLKDFNNASLLFSQIPYPNEYAFNIMIRG 99
Query: 62 YSNSCVP-DQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDF 120
+ + + + FY QM G PN++T+ +F +CA + G H LK+G+
Sbjct: 100 LTTTWQKFNLTIEFYYQMKDFGIRPNNFTYPFVFIACANLLVLNHGQCAHSGVLKSGLCA 159
Query: 121 ELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMP 180
+ V +SLI MY R G++ A +FD +
Sbjct: 160 DGHVRHSLITMYS-------------------------------RCGELGCARRVFDEIS 188
Query: 181 ERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRS 240
E+++VSWN MISGYS+ G G ++ LF EM +GF ++ T+ S+L ACG G
Sbjct: 189 EKDLVSWNSMISGYSRMGYAGDAVGLFGEMRDAGFEPDEMTLVSILGACGDLGDLGLGSW 248
Query: 241 VHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGK 300
+ G+ V + N + +ALI +Y KC + A+RVFD M +++V WNAMI G+ +G
Sbjct: 249 IEGFVVENEMDLNSFVGSALIGMYGKCGDLSSARRVFDRMVKKDVVTWNAMITGYAQNGV 308
Query: 301 PEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPN 360
+E I LF+ + V +PD+IT +GV+ AC L G K+ ++ +
Sbjct: 309 SDEAIILFSGMRESGV-----NPDKITLVGVLSACASIGALDFG-KWLDTYASERGLQND 362
Query: 361 FAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQG----AVAM 416
+ ++YA ++A + MP+ N+ + W +++S F G ++++
Sbjct: 363 IYVSTALIDMYAKCGSLDDALRVFEDMPQKNE------VSWNAMISALAFHGRPQESLSL 416
Query: 417 VERLAKSFVDMDPQDFS 433
+R++K + P D S
Sbjct: 417 FKRMSKEGGAVRPNDIS 433
>gi|359484317|ref|XP_003633097.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g13650-like [Vitis vinifera]
Length = 1005
Score = 247 bits (630), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 139/469 (29%), Positives = 237/469 (50%), Gaps = 44/469 (9%)
Query: 7 IQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSNSC 66
I A + G ++N+ L+ GS VF+ N NA++ + ++
Sbjct: 453 IHACVCKYGFEYDNTVCNA-LVTMYMKIGSVQDGCRVFEATTNRDLISWNALLSGFHDNE 511
Query: 67 VPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMN 126
D G+ + QM+ GF PN YTF+S+ SC+ V+ G H +KN +D V
Sbjct: 512 TCDTGLRIFNQMLAEGFNPNMYTFISILRSCSSLSDVDLGKQVHAQIVKNSLDGNDFVGT 571
Query: 127 SLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVS 186
+L++MY A+N F++ A +F+ + +R++ +
Sbjct: 572 ALVDMY--------AKNRFLE-----------------------DAETIFNRLIKRDLFA 600
Query: 187 WNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTV 246
W ++++GY++ G ++K F +M + G + N+ T+AS L+ C R A + GR +H +
Sbjct: 601 WTVIVAGYAQDGQGEKAVKCFIQMQREGVKPNEFTLASSLSGCSRIATLDSGRQLHSMAI 660
Query: 247 RTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIK 306
+ ++ + +AL+D+Y+KC VE A+ VFD + R+ V WN +I G+ HG+ + +K
Sbjct: 661 KAGQSGDMFVASALVDMYAKCGCVEDAEVVFDGLVSRDTVSWNTIICGYSQHGQGGKALK 720
Query: 307 LFTALVN-GTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYW 365
F A+++ GTV PDE+TFIGV+ AC L+ EG+K+F + Y I P HY
Sbjct: 721 AFEAMLDEGTV------PDEVTFIGVLSACSHMGLIEEGKKHFNSLSKIYGITPTIEHYA 774
Query: 366 CMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFV 425
CM ++ A E E + +M ++ ++W ++L C+ G + ER A
Sbjct: 775 CMVDILGRAGKFHEVESFIEEM-----KLTSNVLIWETVLGACKMHGNIEFGERAAMKLF 829
Query: 426 DMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDL 474
+++P+ S Y L N++A G W+DV VR LM R + + PGC V++
Sbjct: 830 ELEPEIDSNYILLSNMFAAKGMWDDVTNVRALMSTRGVKKEPGCSWVEV 878
Score = 114 bits (285), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 80/313 (25%), Positives = 144/313 (46%), Gaps = 42/313 (13%)
Query: 90 FVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMS 149
+ + +CA G + G HG +K+G++
Sbjct: 131 YSGMLRTCASKGDLNEGKAIHGQVIKSGIN------------------------------ 160
Query: 150 PRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFRE 209
D WNS+V+ + + G + A ++F +PER+VVSW +I+G+ G ++ LF E
Sbjct: 161 -PDSHLWNSLVNVYAKCGSANYACKVFGEIPERDVVSWTALITGFVAEGYGSGAVNLFCE 219
Query: 210 MMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQK 269
M + G N+ T A+ L AC G+ VH ++ ++ + +AL+DLY+KC +
Sbjct: 220 MRREGVEANEFTYATALKACSMCLDLEFGKQVHAEAIKVGDFSDLFVGSALVDLYAKCGE 279
Query: 270 VEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFI 329
+ +A+RVF M +N V WNA++ G G E+ + LF + G I+ + T
Sbjct: 280 MVLAERVFLCMPKQNAVSWNALLNGFAQMGDAEKVLNLFCRMT-----GSEINFSKFTLS 334
Query: 330 GVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHY--WCMANLYAGAELTEEAEEILRKM 387
V+ C + L G+ I +I + C+ ++Y+ L +A ++ ++
Sbjct: 335 TVLKGCANSGNLRAGQIVHSLAI---RIGCELDEFISCCLVDMYSKCGLAGDALKVFVRI 391
Query: 388 PEDNDNMSFESIM 400
ED D +S+ +I+
Sbjct: 392 -EDPDVVSWSAII 403
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 79/328 (24%), Positives = 142/328 (43%), Gaps = 37/328 (11%)
Query: 7 IQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSNSC 66
I +I SG+ ++ W +L+ A GS +Y VF I A+I +
Sbjct: 150 IHGQVIKSGINPDSHLWN-SLVNVYAKCGSANYACKVFGEIPERDVVSWTALITGFVAEG 208
Query: 67 VPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMN 126
V + +M + G N +T+ + +C+ +E G H A+K G +L V +
Sbjct: 209 YGSGAVNLFCEMRREGVEANEFTYATALKACSMCLDLEFGKQVHAEAIKVGDFSDLFVGS 268
Query: 127 SLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVS 186
+L+++Y + G+M A +F MP++N VS
Sbjct: 269 ALVDLYA-------------------------------KCGEMVLAERVFLCMPKQNAVS 297
Query: 187 WNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTV 246
WN +++G+++ G+ L LF M S + T+++VL C S G+ VH +
Sbjct: 298 WNALLNGFAQMGDAEKVLNLFCRMTGSEINFSKFTLSTVLKGCANSGNLRAGQIVHSLAI 357
Query: 247 RTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIK 306
R + + + L+D+YSKC A +VF + D ++V W+A+I G+ E +
Sbjct: 358 RIGCELDEFISCCLVDMYSKCGLAGDALKVFVRIEDPDVVSWSAIITCLDQKGQSREAAE 417
Query: 307 LFTALVNGTVAGGSISPDEITFIGVICA 334
+F + + V P++ T ++ A
Sbjct: 418 VFKRMRHSGVI-----PNQFTLASLVSA 440
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 96/461 (20%), Positives = 191/461 (41%), Gaps = 52/461 (11%)
Query: 6 QIQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSNS 65
Q+ A I G F ++ F L+ A G VF C+ NA++ ++
Sbjct: 250 QVHAEAIKVGDF-SDLFVGSALVDLYAKCGEMVLAERVFLCMPKQNAVSWNALLNGFAQM 308
Query: 66 CVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVM 125
++ + + +M + + +T ++ CA +G + G + H LA++ G + + +
Sbjct: 309 GDAEKVLNLFCRMTGSEINFSKFTLSTVLKGCANSGNLRAGQIVHSLAIRIGCELDEFIS 368
Query: 126 NSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVV 185
L++MY G A +FV++ D VV
Sbjct: 369 CCLVDMYSKCGLAGDALKVFVRIEDPD-------------------------------VV 397
Query: 186 SWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYT 245
SW+ +I+ + G + ++F+ M SG N T+AS+++A G S+H
Sbjct: 398 SWSAIITCLDQKGQSREAAEVFKRMRHSGVIPNQFTLASLVSAATDLGDLYYGESIHACV 457
Query: 246 VRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGI 305
+ + + + AL+ +Y K V+ RVF++ +R+L+ WNA++ G + + G+
Sbjct: 458 CKYGFEYDNTVCNALVTMYMKIGSVQDGCRVFEATTNRDLISWNALLSGFHDNETCDTGL 517
Query: 306 KLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYW 365
++F N +A G +P+ TFI ++ +C + G++ Q++ +F
Sbjct: 518 RIF----NQMLAEG-FNPNMYTFISILRSCSSLSDVDLGKQVHAQIVKNSLDGNDFVGT- 571
Query: 366 CMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFV 425
+ ++YA E+AE I ++ + + W +++ G E+ K F+
Sbjct: 572 ALVDMYAKNRFLEDAETIFNRL------IKRDLFAWTVIVAGYAQDG---QGEKAVKCFI 622
Query: 426 DMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRM 466
M + +F L A +R+ L R++ M
Sbjct: 623 QMQREGVKPNEFTL-----ASSLSGCSRIATLDSGRQLHSM 658
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 46/191 (24%), Positives = 85/191 (44%), Gaps = 12/191 (6%)
Query: 216 RGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQR 275
+G + + +L C NEG+++HG +++ + P+ L +L+++Y+KC A +
Sbjct: 125 KGRLRQYSGMLRTCASKGDLNEGKAIHGQVIKSGINPDSHLWNSLVNVYAKCGSANYACK 184
Query: 276 VFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICAC 335
VF + +R++V W A+I G G + LF + V +E T+ + AC
Sbjct: 185 VFGEIPERDVVSWTALITGFVAEGYGSGAVNLFCEMRREGV-----EANEFTYATALKAC 239
Query: 336 VRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMS 395
L G++ + I F + +LYA AE + MP+ N
Sbjct: 240 SMCLDLEFGKQVHAEAIKVGDFSDLFVGS-ALVDLYAKCGEMVLAERVFLCMPKQN---- 294
Query: 396 FESIMWVSLLS 406
++ W +LL+
Sbjct: 295 --AVSWNALLN 303
>gi|356533546|ref|XP_003535324.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g09190-like [Glycine max]
Length = 483
Score = 247 bits (630), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 142/467 (30%), Positives = 227/467 (48%), Gaps = 12/467 (2%)
Query: 3 QLLQIQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAY 62
L +I H + GL +N + + A Y +F +NP NA+IKA+
Sbjct: 23 HLTEIHGHFLRHGLQQSNQILA-HFVSVCASLRRVPYATRLFAHTHNPNILLFNAIIKAH 81
Query: 63 SNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFEL 122
S F+ M P+ YT LF S + GG H ++ G
Sbjct: 82 SLHPPFHASFSFFSLMKTRAISPDEYTLAPLFKSASNLRYYVLGGCVHAHVVRLGFTRHA 141
Query: 123 PVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPER 182
V + + +Y M A +F +M D++ WN ++ G + GD+ ++F M ER
Sbjct: 142 SVRVAALEVYASCERMGDASKVFDEMRDPDVVVWNLMIRGFCKMGDLETGMKVFGQMKER 201
Query: 183 NVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVH 242
VVSWN+M+S +K+ +L+LF EM++ GF +D ++ +VL C R + G +H
Sbjct: 202 TVVSWNLMMSCLAKNNKEEKALELFNEMLEQGFEPDDASLVTVLPVCARLGAVDIGEWIH 261
Query: 243 GYT-VRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKP 301
Y + L+ I + +L+D Y KC ++ A +F+ MA +N+V WNAMI G +G+
Sbjct: 262 SYANSKGFLQDTINVGNSLVDFYCKCGNLQAAWSIFNDMASKNVVSWNAMISGLAYNGEG 321
Query: 302 EEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNF 361
E G+ LF +V+ G P++ TF+GV+ C L+ GR F M +K+ P
Sbjct: 322 EVGVNLFEEMVH-----GGFEPNDSTFVGVLACCAHVGLVDRGRDLFASMSVKFKVSPKL 376
Query: 362 AHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLA 421
HY C+ +L EA +++ MP + + +W +LLS CR G + E A
Sbjct: 377 EHYGCVVDLLGRCGHVREARDLITSMP-----LKPTAALWGALLSACRTYGDREIAENAA 431
Query: 422 KSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPG 468
K V ++P + Y L NVYA G+W++V +VR LM+ + ++PG
Sbjct: 432 KELVRLEPWNSGNYVLLSNVYAEEGRWDEVEKVRVLMRGGGVKKVPG 478
>gi|449459160|ref|XP_004147314.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g68930-like [Cucumis sativus]
Length = 695
Score = 247 bits (630), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 131/461 (28%), Positives = 235/461 (50%), Gaps = 45/461 (9%)
Query: 56 NAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALK 115
N I +S + P + + + +M + GF P YT VS+ + A+ + G HG +
Sbjct: 124 NTTIAGFSGNSCPQESLELFKRMQREGFEPTEYTIVSILNASAQLSDLRYGKQIHGSIIV 183
Query: 116 NGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGD------- 168
+ + N+L +MY G ++ AR +F ++ ++L+SWN ++SG+ ++G
Sbjct: 184 RNFLGNVFIWNALTDMYAKCGEIEQARWLFDCLTKKNLVSWNLMISGYAKNGQPEKCIGL 243
Query: 169 ----------------------------MSAAHELFDIMPERNVVSWNIMISGYSKSGNP 200
+ A +F E+++V W M+ GY+K+G
Sbjct: 244 LHQMRLSGHMPDQVTMSTIIAAYCQCGRVDEARRVFSEFKEKDIVCWTAMMVGYAKNGRE 303
Query: 201 GCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTAL 260
+L LF EM+ + T++SV+++C + A + G++VHG ++ L N+++ +AL
Sbjct: 304 EDALLLFNEMLLEHIEPDSYTLSSVVSSCAKLASLHHGQAVHGKSILAGLNNNLLVSSAL 363
Query: 261 IDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGS 320
ID+YSKC ++ A+ VF+ M RN+V WNAMI+G +G ++ ++LF ++
Sbjct: 364 IDMYSKCGFIDDARSVFNLMPTRNVVSWNAMIVGCAQNGHDKDALELFENMLQ-----QK 418
Query: 321 ISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEA 380
PD +TFIG++ AC+ + +G++YF + + + + P HY CM NL E+A
Sbjct: 419 FKPDNVTFIGILSACLHCNWIEQGQEYFDSITNQHGMTPTLDHYACMVNLLGRTGRIEQA 478
Query: 381 EEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLN 440
+++ M D D ++W +LLS+C +G + E A+ ++DP Y L N
Sbjct: 479 VALIKNMAHDPD-----FLIWSTLLSICSTKGDIVNAEVAARHLFELDPTIAVPYIMLSN 533
Query: 441 VYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLKEVVEKL 481
+YA G+W+DVA VR LMK + + + G +++ V +
Sbjct: 534 MYASMGRWKDVASVRNLMKSKNVKKFAGFSWIEIDNEVHRF 574
Score = 151 bits (382), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 76/226 (33%), Positives = 132/226 (58%), Gaps = 7/226 (3%)
Query: 126 NSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVV 185
N L+++Y FG + A+N+F +M RD+ SWN+++S + +SG + FD MP R+ V
Sbjct: 62 NQLLHLYAKFGKLRDAQNLFDKMLKRDIFSWNALLSAYAKSGSIQNLKATFDRMPFRDSV 121
Query: 186 SWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYT 245
S+N I+G+S + P SL+LF+ M + GF + T+ S+L A + + G+ +HG
Sbjct: 122 SYNTTIAGFSGNSCPQESLELFKRMQREGFEPTEYTIVSILNASAQLSDLRYGKQIHGSI 181
Query: 246 VRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGI 305
+ + N+ + AL D+Y+KC ++E A+ +FD + +NLV WN MI G+ +G+PE+ I
Sbjct: 182 IVRNFLGNVFIWNALTDMYAKCGEIEQARWLFDCLTKKNLVSWNLMISGYAKNGQPEKCI 241
Query: 306 KLFTAL-VNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQ 350
L + ++G + PD++T +I A + + E R+ F +
Sbjct: 242 GLLHQMRLSGHM------PDQVTMSTIIAAYCQCGRVDEARRVFSE 281
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 59/260 (22%), Positives = 116/260 (44%), Gaps = 33/260 (12%)
Query: 35 GSPDYTVLVFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLF 94
G D VF C A++ Y+ + + ++ + +M+ P+SYT S+
Sbjct: 270 GRVDEARRVFSEFKEKDIVCWTAMMVGYAKNGREEDALLLFNEMLLEHIEPDSYTLSSVV 329
Query: 95 GSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLI 154
SCAK + G HG ++ G++ L V ++LI+MY G +D AR++F M R+++
Sbjct: 330 SSCAKLASLHHGQAVHGKSILAGLNNNLLVSSALIDMYSKCGFIDDARSVFNLMPTRNVV 389
Query: 155 SWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSG 214
SWN+++ G ++G A L+LF M++
Sbjct: 390 SWNAMIVGCAQNGHDKDA-------------------------------LELFENMLQQK 418
Query: 215 FRGNDKTMASVLTACGRSARFNEGRS-VHGYTVRTSLKPNIILDTALIDLYSKCQKVEVA 273
F+ ++ T +L+AC +G+ T + + P + +++L + ++E A
Sbjct: 419 FKPDNVTFIGILSACLHCNWIEQGQEYFDSITNQHGMTPTLDHYACMVNLLGRTGRIEQA 478
Query: 274 QRVFDSMA-DRNLVCWNAMI 292
+ +MA D + + W+ ++
Sbjct: 479 VALIKNMAHDPDFLIWSTLL 498
Score = 39.7 bits (91), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 43/201 (21%), Positives = 84/201 (41%), Gaps = 8/201 (3%)
Query: 19 NNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQM 78
NN + L+ + G D VF + NA+I + + + + M
Sbjct: 355 NNLLVSSALIDMYSKCGFIDDARSVFNLMPTRNVVSWNAMIVGCAQNGHDKDALELFENM 414
Query: 79 IKNGFMPNSYTFVSLFGSCAKTGCVERGG-MCHGLALKNGVDFELPVMNSLINMYGCFGA 137
++ F P++ TF+ + +C +E+G + ++G+ L ++N+ G G
Sbjct: 415 LQQKFKPDNVTFIGILSACLHCNWIEQGQEYFDSITNQHGMTPTLDHYACMVNLLGRTGR 474
Query: 138 MDCARNMFVQMSPR-DLISWNSIVSGHVRSGDM----SAAHELFDIMPERNVVSWNIMIS 192
++ A + M+ D + W++++S GD+ AA LF++ P + IM+S
Sbjct: 475 IEQAVALIKNMAHDPDFLIWSTLLSICSTKGDIVNAEVAARHLFELDP--TIAVPYIMLS 532
Query: 193 GYSKSGNPGCSLKLFREMMKS 213
S + R +MKS
Sbjct: 533 NMYASMGRWKDVASVRNLMKS 553
>gi|242037745|ref|XP_002466267.1| hypothetical protein SORBIDRAFT_01g004770 [Sorghum bicolor]
gi|241920121|gb|EER93265.1| hypothetical protein SORBIDRAFT_01g004770 [Sorghum bicolor]
Length = 537
Score = 247 bits (630), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 148/494 (29%), Positives = 239/494 (48%), Gaps = 25/494 (5%)
Query: 7 IQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSNSC 66
I L GL S LL A G P + +F + +PG A+ +A++ S
Sbjct: 33 IHGLLFKEGLLHAGSHLPTALLSAYAALGRPRHARDLFDEMPDPGLVTRTAMARAHAASG 92
Query: 67 VPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCV----------ERGGMCHGLALKN 116
Q + + M+ +G +P++ +C TG G M H L + +
Sbjct: 93 QTAQALAVFGDMLADGVLPDNVALAVALAACHGTGSFPAALGMAAARRPGKMVHALIVTS 152
Query: 117 GVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELF 176
G+ ++ V LI +YG +G + +R +F M + +SWN++V ++R ++ A+ELF
Sbjct: 153 GIVPDVFVSTELIRLYGEYGELLVSRRLFDAMPVKSTVSWNAMVHQYIRHSNVGDAYELF 212
Query: 177 DIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSG---FRGNDKTMASVLTACGRSA 233
MP+R+VVSWN +I+GY G +L+LFR+MM N T+++VL AC +
Sbjct: 213 LAMPKRDVVSWNTIIAGYCLIGRFMEALELFRQMMSPSSCPVHPNGPTISTVLAACAGAG 272
Query: 234 RFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFD-SMADRNLVCWNAMI 292
G VH Y R + + LD +LID+Y+KC +E A +VF+ + R+L W +I
Sbjct: 273 CLETGIWVHAYIDRNRMNDDGSLDRSLIDMYAKCGSIEKALQVFEKAPGKRDLYSWTTVI 332
Query: 293 LGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMI 352
G +HGK + +++F G + I PD++T +GV+ AC L+ EG +F +
Sbjct: 333 CGLAMHGKAADALRMF-----GMMQDNGIRPDDVTLVGVLNACAHGGLVDEGLHHFYSL- 386
Query: 353 DFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQG 412
+ Y I P HY C+ +L +EA I+R M M +++W + L+ C+
Sbjct: 387 EKYAITPKIEHYGCVIDLLGRVGRLQEAYSIIRTM-----RMKPNAVIWGAFLNACKVHS 441
Query: 413 AVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLV 472
V + E A +DP D L ++YA A W +AR R M +M + PGC +
Sbjct: 442 NVELGEIAAAELTRLDPDDPWAKVMLSSLYAKAQDWSSLARERREMNSLQMKKTPGCSSI 501
Query: 473 DLKEVVEKLKVGHF 486
+L V + G F
Sbjct: 502 ELDGEVHEFVAGSF 515
>gi|224096022|ref|XP_002310520.1| predicted protein [Populus trichocarpa]
gi|222853423|gb|EEE90970.1| predicted protein [Populus trichocarpa]
Length = 710
Score = 246 bits (629), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 135/448 (30%), Positives = 234/448 (52%), Gaps = 17/448 (3%)
Query: 43 VFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGC 102
VF + N +I Y + + + + +M + GF P+ T S+ +CA
Sbjct: 213 VFDGMEEKNVVSWNCLITCYEQNGPAIEALEAFGRMTELGFKPDEVTLASVVSACATLAA 272
Query: 103 VERGGMCHGLALK-NGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVS 161
+ G H +K + +L + N+L++MY G ++ AR +F +M R+ +S ++VS
Sbjct: 273 FKEGVQIHARVVKSDKFRNDLILGNALVDMYAKCGRVNEARCVFDRMPVRNAVSETTMVS 332
Query: 162 GHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKT 221
G+ +S + AA +F + ++++VSWN +I+GY+++G +L LFR + + T
Sbjct: 333 GYAKSASVKAARSMFATIKQKDIVSWNALIAGYTQNGENEEALGLFRMLKRESVCPTHYT 392
Query: 222 MASVLTACGRSARFNEGRSVHGYTVRTSLK------PNIILDTALIDLYSKCQKVEVAQR 275
++L A A GR H + V+ + P+I + +LID+Y KC VE R
Sbjct: 393 FGNLLNASANLADLELGRQAHSHVVKHGFRFQSGEEPDIFVGNSLIDMYMKCGSVEEGLR 452
Query: 276 VFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICAC 335
VF++M +++ V WN MI+G+ +G E ++LF ++ PD +T IG +CAC
Sbjct: 453 VFENMVEKDHVSWNTMIIGYAQNGYGMEALELFQKMLE-----SGEKPDHVTMIGTLCAC 507
Query: 336 VRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMS 395
A L+ EGR+YF M + + P HY CM +L A EEA++++ MP+ D
Sbjct: 508 SHAGLVEEGRRYFFSMTKEHGLLPVKDHYTCMVDLLGRAGCLEEAKDLIESMPKQPD--- 564
Query: 396 FESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVR 455
+++W SLLS C+ + + + +A+ ++DP Y L N+Y+ G+W D VR
Sbjct: 565 --AVVWSSLLSACKVHRNITLGKYVAEKIFEIDPTSSGPYVLLANMYSELGRWGDAVSVR 622
Query: 456 ELMKKRRMGRMPGCRLVDLKEVVEKLKV 483
+LM++R + + PGC +D++ V V
Sbjct: 623 KLMRRRGVVKQPGCSWIDIQSNVHVFMV 650
Score = 161 bits (407), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 105/378 (27%), Positives = 176/378 (46%), Gaps = 14/378 (3%)
Query: 83 FMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCAR 142
F +S F L C K HG ++ E+ + N LI++YG G +D AR
Sbjct: 20 FFTDSSPFAKLLDLCVKLRSSRDARSVHGRLIQTPFCEEVFIQNRLIDVYGKCGYLDYAR 79
Query: 143 NMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGC 202
+F +MS R++ S+NSI+S +R G + + LF +MPE++ SWN MI+G+++
Sbjct: 80 KVFDRMSERNVFSFNSIISTLMRWGFVDESAWLFSLMPEKDQCSWNSMIAGFAQHDRFEE 139
Query: 203 SLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALID 262
+L F M + F ND + S L+AC R G +HG ++ ++ + + LID
Sbjct: 140 ALDWFVRMHRDDFVLNDYSFGSGLSACSRLKDLKLGAQIHGLISKSKYSLDVFMGSGLID 199
Query: 263 LYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSIS 322
YSKC V A+RVFD M ++N+V WN +I + +G E ++ F G +
Sbjct: 200 FYSKCGLVGCARRVFDGMEEKNVVSWNCLITCYEQNGPAIEALEAF-----GRMTELGFK 254
Query: 323 PDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEE 382
PDE+T V+ AC EG + +++ K + + + ++YA EA
Sbjct: 255 PDEVTLASVVSACATLAAFKEGVQIHARVVKSDKFRNDLILGNALVDMYAKCGRVNEARC 314
Query: 383 ILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVY 442
+ +MP N VS ++ A V+ F + +D + L+ Y
Sbjct: 315 VFDRMPVRNA---------VSETTMVSGYAKSASVKAARSMFATIKQKDIVSWNALIAGY 365
Query: 443 AVAGQWEDVARVRELMKK 460
G+ E+ + ++K+
Sbjct: 366 TQNGENEEALGLFRMLKR 383
Score = 117 bits (293), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 85/351 (24%), Positives = 157/351 (44%), Gaps = 68/351 (19%)
Query: 34 FGSPDYTVLVFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSL 93
+G D + +F + N++I ++ ++ + ++++M ++ F+ N Y+F S
Sbjct: 103 WGFVDESAWLFSLMPEKDQCSWNSMIAGFAQHDRFEEALDWFVRMHRDDFVLNDYSFGSG 162
Query: 94 FGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDL 153
+C++ ++ G HGL K+ ++ + + LI+ Y G + CAR +F M +++
Sbjct: 163 LSACSRLKDLKLGAQIHGLISKSKYSLDVFMGSGLIDFYSKCGLVGCARRVFDGMEEKNV 222
Query: 154 ISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKS 213
+SWN +I+ Y ++G +L+ F M +
Sbjct: 223 VSWN-------------------------------CLITCYEQNGPAIEALEAFGRMTEL 251
Query: 214 GFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTS-LKPNIILDTALIDLYSKCQKVEV 272
GF+ ++ T+ASV++AC A F EG +H V++ + ++IL AL+D+Y+KC +V
Sbjct: 252 GFKPDEVTLASVVSACATLAAFKEGVQIHARVVKSDKFRNDLILGNALVDMYAKCGRVNE 311
Query: 273 AQRVFDSMADRN-------------------------------LVCWNAMILGHCIHGKP 301
A+ VFD M RN +V WNA+I G+ +G+
Sbjct: 312 ARCVFDRMPVRNAVSETTMVSGYAKSASVKAARSMFATIKQKDIVSWNALIAGYTQNGEN 371
Query: 302 EEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMI 352
EE + LF L S+ P TF ++ A L GR+ ++
Sbjct: 372 EEALGLFRMLKR-----ESVCPTHYTFGNLLNASANLADLELGRQAHSHVV 417
Score = 43.1 bits (100), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 44/223 (19%), Positives = 104/223 (46%), Gaps = 18/223 (8%)
Query: 6 QIQAHLITSGLFFNNS-----FWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIK 60
Q +H++ G F + F +L+ GS + + VF+ + N +I
Sbjct: 411 QAHSHVVKHGFRFQSGEEPDIFVGNSLIDMYMKCGSVEEGLRVFENMVEKDHVSWNTMII 470
Query: 61 AYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERG-GMCHGLALKNGVD 119
Y+ + + + + +M+++G P+ T + +C+ G VE G + ++G+
Sbjct: 471 GYAQNGYGMEALELFQKMLESGEKPDHVTMIGTLCACSHAGLVEEGRRYFFSMTKEHGL- 529
Query: 120 FELPVMNS---LINMYGCFGAMDCARNMFVQMSPR-DLISWNSIVSGHVRSGDMS----A 171
LPV + ++++ G G ++ A+++ M + D + W+S++S +++
Sbjct: 530 --LPVKDHYTCMVDLLGRAGCLEEAKDLIESMPKQPDAVVWSSLLSACKVHRNITLGKYV 587
Query: 172 AHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSG 214
A ++F+I P + + ++ + YS+ G G ++ + + M + G
Sbjct: 588 AEKIFEIDPTSS-GPYVLLANMYSELGRWGDAVSVRKLMRRRG 629
>gi|147816693|emb|CAN62262.1| hypothetical protein VITISV_013985 [Vitis vinifera]
Length = 531
Score = 246 bits (629), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 143/486 (29%), Positives = 247/486 (50%), Gaps = 14/486 (2%)
Query: 2 KQLLQIQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKA 61
+++ QI A I SGL LL Y +LVF I +P F NA+I+
Sbjct: 39 QEVRQIHAQFIVSGLLARPPNAG-RLLDSYVSMSQIYYALLVFNRIPSPDVFAYNAMIRG 97
Query: 62 YSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFE 121
+ P ++ Y +++ G P++YT+ + C+ + G H +K GV +
Sbjct: 98 LTLGNCPYDSLLLYNKLLLGGLTPDNYTYTFVLKVCSHLKAIFEGKQVHCQVIKAGVAPD 157
Query: 122 LPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPE 181
+ SLI+MY + CA + + S ++++ NS++SG++ G + A +FD M
Sbjct: 158 THIHTSLIHMYAKSDCLACAEGVLAECSQENVLAINSMISGYMSQGHVEKARAMFDKMGA 217
Query: 182 RNVVSWNIMISGYSKSGNPGCSLKLFREMM---KSGFRGNDKTMASVLTACGRSARFNEG 238
++ +W+ MI+GY+K+G +L +FREMM SG + N+ + S L+A ++G
Sbjct: 218 KDAATWSGMITGYTKNGMHEEALVMFREMMMVSNSGVQPNESALVSSLSATACLGALDQG 277
Query: 239 RSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIH 298
R +H Y R K +I L T L+D+Y+KC + + ++F M R++V W M+ G +H
Sbjct: 278 RWIHAYIRRIGAKISITLGTGLVDMYAKCGSIHCSYKLFREMQQRDVVTWGVMMSGFAMH 337
Query: 299 GKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIK 358
G+ + +LF + VAGG+ P+E+ F+ ++ AC A L G YF QM+ + I+
Sbjct: 338 GQARKCFQLFDEM----VAGGT-RPNEVIFVAILSACSHAGYLELGHHYFNQMVTDFGIR 392
Query: 359 PNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVE 418
P+ HY CM +L A EAEE++ MPE+ +++W +LLS CR +
Sbjct: 393 PSVEHYGCMVDLLGRAGQLAEAEELIISMPEEPT-----AVIWGALLSACRIHKDLRRGR 447
Query: 419 RLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLKEVV 478
R + + ++P RY+ +++ AG+ E+ V +K+ + G +++ VV
Sbjct: 448 RAFRQLMQLEPLRGDRYKLAGQMFSSAGEKEEADNVTRFIKENELETTRGSSFIEINGVV 507
Query: 479 EKLKVG 484
+ VG
Sbjct: 508 HEFVVG 513
>gi|359490408|ref|XP_002267761.2| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
mitochondrial-like [Vitis vinifera]
Length = 650
Score = 246 bits (629), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 131/423 (30%), Positives = 230/423 (54%), Gaps = 10/423 (2%)
Query: 56 NAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALK 115
N +I YS + + + M ++ T V + +C+ G E +
Sbjct: 186 NTLICGYSQYNKYKEVLRLFDAMTAANIKADAVTMVKIILACSHLGDWEFADSMVKYIKE 245
Query: 116 NGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHEL 175
N ++ ++ + N+LI+MYG + A+ +F +M R+++SWN++V GH + G+++AA +L
Sbjct: 246 NNLEIDVYLGNTLIDMYGRRSLAELAQGVFDRMRERNIVSWNALVMGHAKVGNLTAARKL 305
Query: 176 FDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARF 235
FD MP+R+V+SW MI+GYS++ ++KLF+EMM + + + T+ASVL+AC +
Sbjct: 306 FDNMPKRDVISWTSMITGYSQASQFSDAVKLFQEMMAAKVKPDKVTVASVLSACAHLGKL 365
Query: 236 NEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGH 295
+ G +VH Y R ++ +I + +LID+Y KC VE A VF M D++ V W ++I G
Sbjct: 366 DVGWAVHHYIRRHGVQADIYVGNSLIDMYCKCGMVEKALEVFHRMKDKDSVSWTSVISGL 425
Query: 296 CIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFY 355
++G + LF+ ++ + P TF+G++ AC A L+ +G +YF M +
Sbjct: 426 AVNGFANSALDLFSQMLR-----EGVQPTHGTFVGILLACAHAGLVNKGLEYFESMESVH 480
Query: 356 KIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVA 415
+ P HY C+ +L + + ++A E ++KMP D ++W LLS C+ G V
Sbjct: 481 GLVPAMKHYGCVVDLLSRSGNIDKAYEFIKKMPIVPD-----VVVWRILLSACKLHGNVV 535
Query: 416 MVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLK 475
+ E K +++DP D Y L N YA +W+D ++RELM+ + + G +++
Sbjct: 536 LAEIATKRLLELDPCDSGNYVLLSNTYAGVDRWDDAMKMRELMEDSDVQKPSGSSSIEVD 595
Query: 476 EVV 478
+V
Sbjct: 596 GMV 598
Score = 142 bits (359), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 108/424 (25%), Positives = 182/424 (42%), Gaps = 65/424 (15%)
Query: 6 QIQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSNS 65
++ AHLI + L + + + +S + LVF I P N +I+ S S
Sbjct: 35 ELHAHLIRTQLHTDPFLMSDVIRSYSLSSTNLHKAHLVFNQIECPTLVVWNHMIRGLSQS 94
Query: 66 CVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVM 125
P + + Y +M G N+ T + LF +CA+ + G H ALK G + L V
Sbjct: 95 DHPVEAIHMYTRMHHQGITGNNLTLIFLFKACARVSDIVSGRKIHVHALKLGFESYLFVS 154
Query: 126 NSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVV 185
N+LI+MY G + A+ MF M RDL+SWN+++ G
Sbjct: 155 NALIHMYAMCGQLGFAQKMFDGMLDRDLVSWNTLICG----------------------- 191
Query: 186 SWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYT 245
YS+ L+LF M + + + TM ++ AC + S+ Y
Sbjct: 192 --------YSQYNKYKEVLRLFDAMTAANIKADAVTMVKIILACSHLGDWEFADSMVKYI 243
Query: 246 VRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGI 305
+L+ ++ L LID+Y + E+AQ VFD M +RN+V WNA+++GH G
Sbjct: 244 KENNLEIDVYLGNTLIDMYGRRSLAELAQGVFDRMRERNIVSWNALVMGHAKVGNLTAAR 303
Query: 306 KLF-----------TALVNG---------------TVAGGSISPDEITFIGVICACVRAE 339
KLF T+++ G + + PD++T V+ AC
Sbjct: 304 KLFDNMPKRDVISWTSMITGYSQASQFSDAVKLFQEMMAAKVKPDKVTVASVLSACAHLG 363
Query: 340 LLTEG---RKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSF 396
L G Y R+ + ++ + + ++Y + E+A E+ +M +D D++S+
Sbjct: 364 KLDVGWAVHHYIRR----HGVQADIYVGNSLIDMYCKCGMVEKALEVFHRM-KDKDSVSW 418
Query: 397 ESIM 400
S++
Sbjct: 419 TSVI 422
Score = 119 bits (297), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 83/322 (25%), Positives = 150/322 (46%), Gaps = 28/322 (8%)
Query: 147 QMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKL 206
Q+ + + I S + S ++ AH +F+ + +V WN MI G S+S +P ++ +
Sbjct: 44 QLHTDPFLMSDVIRSYSLSSTNLHKAHLVFNQIECPTLVVWNHMIRGLSQSDHPVEAIHM 103
Query: 207 FREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSK 266
+ M G GN+ T+ + AC R + GR +H + ++ + + + ALI +Y+
Sbjct: 104 YTRMHHQGITGNNLTLIFLFKACARVSDIVSGRKIHVHALKLGFESYLFVSNALIHMYAM 163
Query: 267 CQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEI 326
C ++ AQ++FD M DR+LV WN +I G+ + K +E ++LF A+ +I D +
Sbjct: 164 CGQLGFAQKMFDGMLDRDLVSWNTLICGYSQYNKYKEVLRLFDAM-----TAANIKADAV 218
Query: 327 TFIGVICACVRA---ELLTEGRKYFRQ---MIDFYKIKPNFAHYWCMANLYAGAELTEEA 380
T + +I AC E KY ++ ID Y + ++Y L E A
Sbjct: 219 TMVKIILACSHLGDWEFADSMVKYIKENNLEIDVYLGN-------TLIDMYGRRSLAELA 271
Query: 381 EEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLN 440
+ + +M E N VS +L V + K F +M +D + ++
Sbjct: 272 QGVFDRMRERN---------IVSWNALVMGHAKVGNLTAARKLFDNMPKRDVISWTSMIT 322
Query: 441 VYAVAGQWEDVARV-RELMKKR 461
Y+ A Q+ D ++ +E+M +
Sbjct: 323 GYSQASQFSDAVKLFQEMMAAK 344
>gi|115456858|ref|NP_001052029.1| Os04g0110500 [Oryza sativa Japonica Group]
gi|38345581|emb|CAE01779.2| OSJNBa0027H06.17 [Oryza sativa Japonica Group]
gi|113563600|dbj|BAF13943.1| Os04g0110500 [Oryza sativa Japonica Group]
gi|125589117|gb|EAZ29467.1| hypothetical protein OsJ_13541 [Oryza sativa Japonica Group]
gi|215736988|dbj|BAG95917.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 531
Score = 246 bits (629), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 144/486 (29%), Positives = 237/486 (48%), Gaps = 18/486 (3%)
Query: 7 IQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSNSC 66
I L+ +GL + LL A GSPD+ +F + G A+ +A+ S
Sbjct: 32 IHCLLLKAGLLHVGAHLPTALLSAYAALGSPDHARRLFDEMPEQGLVPRTAMARAHVASG 91
Query: 67 VPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGC----VERGGMCHGLALKNGVDFEL 122
Q + + M+ +G P++ G+C G G H L + +G++ ++
Sbjct: 92 QAAQAIAVFGDMVADGVFPDNVALAVALGACHGAGSWTARRNPGKKIHALIVTSGIEPDV 151
Query: 123 PVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPER 182
V LI +YG G + +R +F M R I+WN+++ + R G + A+ELF MP R
Sbjct: 152 FVSTELIRVYGECGKLAVSRRVFDDMPSRSTITWNAMLHQYARHGKVDTAYELFLAMPRR 211
Query: 183 NVVSWNIMISGYSKSGNPGCSLKLFREMMKS---GFRGNDKTMASVLTACGRSARFNEGR 239
+VVSWN +++GY +G +L LFR+M+ N TM+++L AC + G
Sbjct: 212 DVVSWNTVMAGYCVAGRCREALGLFRQMVSPSSCAVHPNVPTMSTILGACAGAGCLETGI 271
Query: 240 SVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMA-DRNLVCWNAMILGHCIH 298
VH Y R + + LD LID+Y KC ++ A +VF+ R+L W +I G +H
Sbjct: 272 WVHAYIERNRMNDDGYLDRCLIDMYCKCGSIDNALQVFEKAPRKRDLFSWTTVICGLAMH 331
Query: 299 GKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIK 358
G+ + +++F + + I PD++T +GV+ AC L+ EG YF M ++I
Sbjct: 332 GRATDALRMFDMMQD-----NGICPDDVTLVGVLNACAHGGLVDEGLGYFYSMEAKFRIT 386
Query: 359 PNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVE 418
P HY CM +L +EA ++R MP D + +++W + LS C+ G + + +
Sbjct: 387 PKIEHYGCMIDLLGRVGRLQEAYSMIRTMPMDPN-----TVIWGAFLSACKVHGNMELGK 441
Query: 419 RLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLKEVV 478
A+ +DP D L ++YA A W +AR R M ++ + PGC ++LK V
Sbjct: 442 IAAEELTRLDPDDPWGRVMLSSMYAKAQDWIGLARERREMNSMQVKKTPGCSSIELKGEV 501
Query: 479 EKLKVG 484
+ G
Sbjct: 502 HEFVAG 507
>gi|15217517|ref|NP_174603.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75168867|sp|Q9C501.1|PPR70_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g33350
gi|12322383|gb|AAG51215.1|AC051630_12 unknown protein; 15445-13829 [Arabidopsis thaliana]
gi|12322567|gb|AAG51281.1|AC027035_4 PPR-repeat protein, putative [Arabidopsis thaliana]
gi|332193465|gb|AEE31586.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 538
Score = 246 bits (629), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 142/487 (29%), Positives = 251/487 (51%), Gaps = 14/487 (2%)
Query: 1 MKQLLQIQAHLITSGLFFNNSFWTINLLKH-SADFGSPDYTVLVFKCINNPGTFCVNAVI 59
+ L Q+Q+ +I SGL ++ F LL+ + + Y +F + P T AV+
Sbjct: 37 LNHLKQVQSFMIVSGLS-HSHFLCFKLLRFCTLRLCNLSYARFIFDRFSFPNTHLYAAVL 95
Query: 60 KAYSNSCVPDQGVVF-YLQMIKNGFMP--NSYTFVSLFGSCAKTGCVERGGMCHGLALKN 116
AYS+S F + +++ N +P N + + + S + H K+
Sbjct: 96 TAYSSSLPLHASSAFSFFRLMVNRSVPRPNHFIYPLVLKSTPYLSSAFSTPLVHTHLFKS 155
Query: 117 GVDFELPVMNSLINMYGC-FGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHEL 175
G + V +L++ Y + AR +F +MS R+++SW +++SG+ RSGD+S A L
Sbjct: 156 GFHLYVVVQTALLHSYASSVSHITLARQLFDEMSERNVVSWTAMLSGYARSGDISNAVAL 215
Query: 176 FDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMM-KSGFRGNDKTMASVLTACGRSAR 234
F+ MPER+V SWN +++ +++G ++ LFR M+ + R N+ T+ VL+AC ++
Sbjct: 216 FEDMPERDVPSWNAILAACTQNGLFLEAVSLFRRMINEPSIRPNEVTVVCVLSACAQTGT 275
Query: 235 FNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILG 294
+ +H + R L ++ + +L+DLY KC +E A VF + ++L WN+MI
Sbjct: 276 LQLAKGIHAFAYRRDLSSDVFVSNSLVDLYGKCGNLEEASSVFKMASKKSLTAWNSMINC 335
Query: 295 HCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDF 354
+HG+ EE I +F ++ + I PD ITFIG++ AC L+++GR YF M +
Sbjct: 336 FALHGRSEEAIAVFEEMMKLNI--NDIKPDHITFIGLLNACTHGGLVSKGRGYFDLMTNR 393
Query: 355 YKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAV 414
+ I+P HY C+ +L A +EA E++ M M + +W SLL+ C+ G +
Sbjct: 394 FGIEPRIEHYGCLIDLLGRAGRFDEALEVMSTM-----KMKADEAIWGSLLNACKIHGHL 448
Query: 415 AMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDL 474
+ E K+ V ++P + + N+Y G WE+ R R+++K + + PG +++
Sbjct: 449 DLAEVAVKNLVALNPNNGGYVAMMANLYGEMGNWEEARRARKMIKHQNAYKPPGWSRIEI 508
Query: 475 KEVVEKL 481
V +
Sbjct: 509 DNEVHQF 515
>gi|449452160|ref|XP_004143828.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g20540-like [Cucumis sativus]
Length = 532
Score = 246 bits (629), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 150/486 (30%), Positives = 243/486 (50%), Gaps = 10/486 (2%)
Query: 1 MKQLLQIQAHLITSGLFFNNSFWTINLLKHSADF--GSPDYTVLVFKCINNPGTFCVNAV 58
M QL Q A ++ SGL N++F LL A+ GS + +F+ I +P N +
Sbjct: 18 MNQLKQAHAQVLKSGLH-NSNFVLSRLLNFCAESRNGSLSHAFKLFQHIQHPTICIFNTM 76
Query: 59 IKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGV 118
IKA + + + +NG P++YT + + A+ + G H +K G
Sbjct: 77 IKALLLRGEFLNAIAVFSAIFRNGIHPDTYTLPYVLKASARMTNIHLGESIHACTIKLGS 136
Query: 119 DFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDI 178
V NSL+ MY F M AR +F +M +SW ++ G+ GD+ A ELFD+
Sbjct: 137 AVNEFVGNSLLVMYRSFDNMRSARQVFDEMPELSAVSWTVMIYGYANMGDVDTARELFDM 196
Query: 179 MPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEG 238
++ W MISGY ++ L +FR M + ++ + ++L+AC + G
Sbjct: 197 ATVKDTGIWGAMISGYVQNNCFKEGLHMFRLMQLTEVEPDEAIIVTILSACAHMGALDTG 256
Query: 239 RSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIH 298
+H Y R L + + T LID+Y+KC +++A+ +F+ M+ R+ VCWNAMI G +
Sbjct: 257 IWIHRYLGRLGLPLTLRVSTGLIDMYAKCGHLDLAKYLFNEMSQRDNVCWNAMISGMAMD 316
Query: 299 GKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIK 358
G E IKLF + I PD ITFI V+ AC + ++ EG + + +M +KI+
Sbjct: 317 GDGEGAIKLFMEM-----EKAGIKPDNITFIAVLAACSNSGMVDEGIRIWNRMSTVHKIE 371
Query: 359 PNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVE 418
P HY C+ +L + EEAE +++++P+ + S E++ W + LS C G E
Sbjct: 372 PKSEHYGCVIDLLSRVGRFEEAEGVIQRLPK-TASPSEEAVAWRAFLSACCKHGQTQQAE 430
Query: 419 RLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLKEVV 478
A+ ++ Y L N+YA G+ ED RVR +MK + + ++PGC + + VV
Sbjct: 431 VAAERLFQLERHS-GAYVLLSNMYAALGKHEDAKRVRNMMKLKGVEKVPGCSSIKVNGVV 489
Query: 479 EKLKVG 484
+ G
Sbjct: 490 NEFIAG 495
>gi|242041125|ref|XP_002467957.1| hypothetical protein SORBIDRAFT_01g037150 [Sorghum bicolor]
gi|241921811|gb|EER94955.1| hypothetical protein SORBIDRAFT_01g037150 [Sorghum bicolor]
Length = 650
Score = 246 bits (629), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 136/431 (31%), Positives = 230/431 (53%), Gaps = 10/431 (2%)
Query: 43 VFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGC 102
VF + F A+I + + + + + + M + G+ + VS+ +CAK+
Sbjct: 225 VFDGAEHRDAFTWTAMISCFERNDLFVEALAVFSDMREEGWPVDEAVMVSVVAACAKSEV 284
Query: 103 VERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSG 162
++ G +CHGL ++ G+ + V N+LI+MY + AR +F D SWNS++SG
Sbjct: 285 IQNGEVCHGLVVRAGLGSRVNVQNALIHMYSSCLDVVAARRLFDSSESLDHFSWNSMISG 344
Query: 163 HVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTM 222
++++G + A LF++MP+++ VSW+ MI+G ++ +L +F M + ++ T+
Sbjct: 345 YLKNGRVEDAKALFNVMPDKDNVSWSAMIAGCVQNNQSSEALTVFDNMRAHEIKPDEVTL 404
Query: 223 ASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMAD 282
SV++AC +G+ VH Y + I+L T+LID+Y KC +E A VFD + +
Sbjct: 405 VSVISACTNLCALEQGKLVHEYIRQYQYNITIVLGTSLIDMYMKCGCMEAALEVFDMVEE 464
Query: 283 RNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLT 342
+ CWNA+I+G ++G + +F+ + +A P EITF GV+ AC L+
Sbjct: 465 KGTPCWNAVIVGLAMNGLVTRSLDMFSEMETSGIA----VPSEITFTGVLSACRHGGLVE 520
Query: 343 EGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWV 402
EGR++F+ M + Y+I PN HY CM +L A EAE++++ MP MS + W
Sbjct: 521 EGRQFFKLMQNKYQIIPNIRHYGCMVDLLGRAGYVREAEDLIQSMP-----MSPDVPAWG 575
Query: 403 SLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRR 462
+LL C + ER+ K V +DP L N+YA G W+ V +R MK+
Sbjct: 576 ALLGACWKHSDSEVGERVGKKLVKLDPHHDGFQTMLSNIYASEGMWQCVKDLRGSMKQ-H 634
Query: 463 MGRMPGCRLVD 473
+ ++ GC +V+
Sbjct: 635 VAKVAGCSVVE 645
Score = 147 bits (372), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 114/420 (27%), Positives = 178/420 (42%), Gaps = 79/420 (18%)
Query: 2 KQLLQIQAHLITSGLF-----------FNNSFWTINLLKHSADFGSPDYTVLVFKCINNP 50
+ LL+I A + SGL F S LL +++ +F+ + +P
Sbjct: 18 RHLLEIHAQFLASGLLADAYAASRLLLFTTSATAARLLPQPLH-----HSLQLFRLVRSP 72
Query: 51 GTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCH 110
F N +I+A +P Y M P++YT L +CA G G H
Sbjct: 73 NAFTCNTLIRAALRQGLPHLCFPLYASMPA---APDTYTHPLLAAACAARGDAREGRQVH 129
Query: 111 GLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMS 170
A+K+G L + N+L++MY G + AR +F D +SWN+I++ +VR GD+
Sbjct: 130 SHAVKHGFGDNLYLRNALMHMYSACGCVAGARRVFDAGPVWDAVSWNTILATYVRDGDVE 189
Query: 171 AAHELFDIMPERNVV-------------------------------SWNIMISGYSKSGN 199
A +F MPER+ +W MIS + ++
Sbjct: 190 QAVGVFARMPERSAAAVSSMVALFARTGMVEEARGVFDGAEHRDAFTWTAMISCFERNDL 249
Query: 200 PGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTA 259
+L +F +M + G+ ++ M SV+ AC +S G HG VR L + + A
Sbjct: 250 FVEALAVFSDMREEGWPVDEAVMVSVVAACAKSEVIQNGEVCHGLVVRAGLGSRVNVQNA 309
Query: 260 LIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLF----------- 308
LI +YS C V A+R+FDS + WN+MI G+ +G+ E+ LF
Sbjct: 310 LIHMYSSCLDVVAARRLFDSSESLDHFSWNSMISGYLKNGRVEDAKALFNVMPDKDNVSW 369
Query: 309 TALVNGTVAGGS---------------ISPDEITFIGVICACVRAELLTEGR---KYFRQ 350
+A++ G V I PDE+T + VI AC L +G+ +Y RQ
Sbjct: 370 SAMIAGCVQNNQSSEALTVFDNMRAHEIKPDEVTLVSVISACTNLCALEQGKLVHEYIRQ 429
>gi|297738694|emb|CBI27939.3| unnamed protein product [Vitis vinifera]
Length = 764
Score = 246 bits (628), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 141/469 (30%), Positives = 237/469 (50%), Gaps = 45/469 (9%)
Query: 7 IQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSNSC 66
I +I SG+ ++ W +L+ A GS +Y VF I A+I +
Sbjct: 213 IHGQVIKSGINPDSHLWN-SLVNVYAKCGSANYACKVFGEIPERDVVSWTALITGFVAEG 271
Query: 67 VPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMN 126
G+ + QM+ GF PN YTF+S+ SC+ V+ G H +KN +D V
Sbjct: 272 Y-GSGLRIFNQMLAEGFNPNMYTFISILRSCSSLSDVDLGKQVHAQIVKNSLDGNDFVGT 330
Query: 127 SLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVS 186
+L++MY A+N F++ A +F+ + +R++ +
Sbjct: 331 ALVDMY--------AKNRFLE-----------------------DAETIFNRLIKRDLFA 359
Query: 187 WNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTV 246
W ++++GY++ G ++K F +M + G + N+ T+AS L+ C R A + GR +H +
Sbjct: 360 WTVIVAGYAQDGQGEKAVKCFIQMQREGVKPNEFTLASSLSGCSRIATLDSGRQLHSMAI 419
Query: 247 RTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIK 306
+ ++ + +AL+D+Y+KC VE A+ VFD + R+ V WN +I G+ HG+ + +K
Sbjct: 420 KAGQSGDMFVASALVDMYAKCGCVEDAEVVFDGLVSRDTVSWNTIICGYSQHGQGGKALK 479
Query: 307 LFTALVN-GTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYW 365
F A+++ GTV PDE+TFIGV+ AC L+ EG+K+F + Y I P HY
Sbjct: 480 AFEAMLDEGTV------PDEVTFIGVLSACSHMGLIEEGKKHFNSLSKIYGITPTIEHYA 533
Query: 366 CMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFV 425
CM ++ A E E + +M ++ ++W ++L C+ G + ER A
Sbjct: 534 CMVDILGRAGKFHEVESFIEEM-----KLTSNVLIWETVLGACKMHGNIEFGERAAMKLF 588
Query: 426 DMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDL 474
+++P+ S Y L N++A G W+DV VR LM R + + PGC V++
Sbjct: 589 ELEPEIDSNYILLSNMFAAKGMWDDVTNVRALMSTRGVKKEPGCSWVEV 637
Score = 150 bits (380), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 96/387 (24%), Positives = 181/387 (46%), Gaps = 44/387 (11%)
Query: 14 SGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSNSCVPDQGVV 73
S + +N+F T+ + S + G + ++ + + + N ++ + ++ DQG
Sbjct: 123 SDILISNAFVTMYMKTQSVENGWQFFKAMMIENLASR-----NNLLSGFCDTETCDQGPR 177
Query: 74 FYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYG 133
+Q++ GF PN YTF+S+ +CA G + G HG +K+G++ + + NSL+N+Y
Sbjct: 178 ILIQLLVEGFEPNMYTFISILKTCASKGDLNEGKAIHGQVIKSGINPDSHLWNSLVNVYA 237
Query: 134 CFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISG 193
G+ + A +F ++ RD++SW ++++G V G
Sbjct: 238 KCGSANYACKVFGEIPERDVVSWTALITGFVAEG-------------------------- 271
Query: 194 YSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPN 253
G L++F +M+ GF N T S+L +C + + G+ VH V+ SL N
Sbjct: 272 ------YGSGLRIFNQMLAEGFNPNMYTFISILRSCSSLSDVDLGKQVHAQIVKNSLDGN 325
Query: 254 IILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVN 313
+ TAL+D+Y+K + +E A+ +F+ + R+L W ++ G+ G+ E+ +K F +
Sbjct: 326 DFVGTALVDMYAKNRFLEDAETIFNRLIKRDLFAWTVIVAGYAQDGQGEKAVKCFIQMQR 385
Query: 314 GTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAG 373
V P+E T + C R L GR+ I + F + ++YA
Sbjct: 386 EGV-----KPNEFTLASSLSGCSRIATLDSGRQLHSMAIKAGQSGDMFVAS-ALVDMYAK 439
Query: 374 AELTEEAEEILRKMPEDNDNMSFESIM 400
E+AE + + D +S+ +I+
Sbjct: 440 CGCVEDAEVVFDGLV-SRDTVSWNTII 465
Score = 85.9 bits (211), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 62/252 (24%), Positives = 118/252 (46%), Gaps = 14/252 (5%)
Query: 156 WNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGF 215
W+S+V+ +V+ + A ++ + MP ++V WN +S + +++LF M +
Sbjct: 27 WSSLVNVYVKCESLQCARQVLEEMPIQDVQQWNQKLSSANSPYPLQEAVQLFYLMRHTRI 86
Query: 216 RGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQR 275
R N AS+++A + G S+H + + +I++ A + +Y K Q VE +
Sbjct: 87 RLNQFIFASLISAAASLGDNHYGESIHACVCKYGFESDILISNAFVTMYMKTQSVENGWQ 146
Query: 276 VFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICAC 335
F +M NL N ++ G C ++G ++ L+ V G P+ TFI ++ C
Sbjct: 147 FFKAMMIENLASRNNLLSGFCDTETCDQGPRILIQLL---VEG--FEPNMYTFISILKTC 201
Query: 336 VRAELLTEGRKYFRQMIDFYKIKPNFAHYW-CMANLYAGAELTEEAEEILRKMPEDNDNM 394
L EG+ Q+I I P+ +H W + N+YA A ++ ++PE
Sbjct: 202 ASKGDLNEGKAIHGQVIK-SGINPD-SHLWNSLVNVYAKCGSANYACKVFGEIPER---- 255
Query: 395 SFESIMWVSLLS 406
+ + W +L++
Sbjct: 256 --DVVSWTALIT 265
>gi|356540333|ref|XP_003538644.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g14820-like [Glycine max]
Length = 721
Score = 246 bits (628), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 141/477 (29%), Positives = 242/477 (50%), Gaps = 12/477 (2%)
Query: 5 LQIQAHLITS--GLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAY 62
L ++ H + S G F + F L+ A G +F +++ N +I Y
Sbjct: 133 LGLEIHGLASKFGFFHADPFIQSALIAMYAACGRIMDARFLFDKMSHRDVVTWNIMIDGY 192
Query: 63 SNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFEL 122
S + D + Y +M +G P++ ++ +CA G + G H NG
Sbjct: 193 SQNAHYDHVLKLYEEMKTSGTEPDAIILCTVLSACAHAGNLSYGKAIHQFIKDNGFRVGS 252
Query: 123 PVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPER 182
+ SL+NMY GAM AR ++ Q+ + ++ +++SG+ + G + A +FD M E+
Sbjct: 253 HIQTSLVNMYANCGAMHLAREVYDQLPSKHMVVSTAMLSGYAKLGMVQDARFIFDRMVEK 312
Query: 183 NVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVH 242
++V W+ MISGY++S P +L+LF EM + + TM SV++AC + + +H
Sbjct: 313 DLVCWSAMISGYAESYQPLEALQLFNEMQRRRIVPDQITMLSVISACANVGALVQAKWIH 372
Query: 243 GYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPE 302
Y + + ++ ALID+Y+KC + A+ VF++M +N++ W++MI +HG +
Sbjct: 373 TYADKNGFGRTLPINNALIDMYAKCGNLVKAREVFENMPRKNVISWSSMINAFAMHGDAD 432
Query: 303 EGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFA 362
I LF + +I P+ +TFIGV+ AC A L+ EG+K+F MI+ ++I P
Sbjct: 433 SAIALFHRMKE-----QNIEPNGVTFIGVLYACSHAGLVEEGQKFFSSMINEHRISPQRE 487
Query: 363 HYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAK 422
HY CM +LY A +A E++ MP I+W SL+S C+ G + + E A
Sbjct: 488 HYGCMVDLYCRANHLRKAMELIETMP-----FPPNVIIWGSLMSACQNHGEIELGEFAAT 542
Query: 423 SFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLKEVVE 479
++++P L N+YA +W+DV VR+LMK + + + C +++ V
Sbjct: 543 RLLELEPDHDGALVVLSNIYAKEKRWDDVGLVRKLMKHKGVSKEKACSRIEVNNEVH 599
Score = 149 bits (376), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 113/429 (26%), Positives = 188/429 (43%), Gaps = 87/429 (20%)
Query: 38 DYTVLVFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSC 97
DY + +F I NP T N +++ +S P+ + YL + +NGF + ++F L +
Sbjct: 66 DYALSLFSHIPNPPTRFSNQLLRQFSRGPTPENTLSLYLHLRRNGFPLDRFSFPPLLKAV 125
Query: 98 AKTGCVERGGMCHGLALKNGVDFELPVMNS-LINMYGCFGAMDCARNMFVQMSPRDLISW 156
+K + G HGLA K G P + S LI MY G + AR +F +MS RD+++W
Sbjct: 126 SKLSALNLGLEIHGLASKFGFFHADPFIQSALIAMYAACGRIMDARFLFDKMSHRDVVTW 185
Query: 157 NSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFR 216
NIMI GYS++ + LKL+ EM SG
Sbjct: 186 -------------------------------NIMIDGYSQNAHYDHVLKLYEEMKTSGTE 214
Query: 217 GNDKTMASVLTACGRSARFNEGRSVH----------GYTVRTSL---------------- 250
+ + +VL+AC + + G+++H G ++TSL
Sbjct: 215 PDAIILCTVLSACAHAGNLSYGKAIHQFIKDNGFRVGSHIQTSLVNMYANCGAMHLAREV 274
Query: 251 -----KPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGI 305
++++ TA++ Y+K V+ A+ +FD M +++LVCW+AMI G+ +P E +
Sbjct: 275 YDQLPSKHMVVSTAMLSGYAKLGMVQDARFIFDRMVEKDLVCWSAMISGYAESYQPLEAL 334
Query: 306 KLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYW 365
+LF + + PD+IT + VI AC L + + I Y K F
Sbjct: 335 QLFNEMQRRRIV-----PDQITMLSVISACANVGALVQAK-----WIHTYADKNGFGRTL 384
Query: 366 CMAN----LYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQG----AVAMV 417
+ N +YA +A E+ MP N I W S+++ G A+A+
Sbjct: 385 PINNALIDMYAKCGNLVKAREVFENMPRKN------VISWSSMINAFAMHGDADSAIALF 438
Query: 418 ERLAKSFVD 426
R+ + ++
Sbjct: 439 HRMKEQNIE 447
>gi|356547111|ref|XP_003541961.1| PREDICTED: pentatricopeptide repeat-containing protein At1g05750,
chloroplastic-like [Glycine max]
Length = 521
Score = 246 bits (628), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 131/414 (31%), Positives = 219/414 (52%), Gaps = 14/414 (3%)
Query: 75 YLQMIKNGFMPNSYTFVSLFGSCA---KTGCVERGGMCHGLALKNGVDF-ELPVMNSLIN 130
++QM + PN TF++L +CA + G H K G+D ++ V +LI+
Sbjct: 79 FVQMREAAIEPNHITFITLLSACAHYPSRSSISFGTAIHAHVRKLGLDINDVMVGTALID 138
Query: 131 MYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIM 190
MY G ++ AR F QM R+L+SWN+++ G++R+G A ++FD +P +N +SW +
Sbjct: 139 MYAKCGRVESARLAFDQMGVRNLVSWNTMIDGYMRNGKFEDALQVFDGLPVKNAISWTAL 198
Query: 191 ISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSL 250
I G+ K +L+ FREM SG + T+ +V+ AC G VH +
Sbjct: 199 IGGFVKKDYHEEALECFREMQLSGVAPDYVTVIAVIAACANLGTLGLGLWVHRLVMTQDF 258
Query: 251 KPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTA 310
+ N+ + +LID+YS+C +++A++VFD M R LV WN++I+G ++G +E + F +
Sbjct: 259 RNNVKVSNSLIDMYSRCGCIDLARQVFDRMPQRTLVSWNSIIVGFAVNGLADEALSYFNS 318
Query: 311 LVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANL 370
+ PD +++ G + AC A L+ EG + F M +I P HY C+ +L
Sbjct: 319 MQE-----EGFKPDGVSYTGALMACSHAGLIGEGLRIFEHMKRVRRILPRIEHYGCLVDL 373
Query: 371 YAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQ 430
Y+ A EEA +L+ MP M ++ SLL+ CR QG + + E + +++D
Sbjct: 374 YSRAGRLEEALNVLKNMP-----MKPNEVILGSLLAACRTQGNIGLAENVMNYLIELDSG 428
Query: 431 DFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLKEVVEKLKVG 484
S Y L N+YA G+W+ +VR MK+R + + PG +++ + K G
Sbjct: 429 GDSNYVLLSNIYAAVGKWDGANKVRRRMKERGIQKKPGFSSIEIDSSIHKFVSG 482
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 66/236 (27%), Positives = 113/236 (47%), Gaps = 31/236 (13%)
Query: 184 VVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGR---SARFNEGRS 240
+VSW I+ Y KSG+ + F +M ++ N T ++L+AC + + G +
Sbjct: 56 IVSWTTSIADYCKSGHLVKAASKFVQMREAAIEPNHITFITLLSACAHYPSRSSISFGTA 115
Query: 241 VHGYTVRTSLKPN-IILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHG 299
+H + + L N +++ TALID+Y+KC +VE A+ FD M RNLV WN MI G+ +G
Sbjct: 116 IHAHVRKLGLDINDVMVGTALIDMYAKCGRVESARLAFDQMGVRNLVSWNTMIDGYMRNG 175
Query: 300 KPEEGIKLF-----------TALVNGTVAG---------------GSISPDEITFIGVIC 333
K E+ +++F TAL+ G V ++PD +T I VI
Sbjct: 176 KFEDALQVFDGLPVKNAISWTALIGGFVKKDYHEEALECFREMQLSGVAPDYVTVIAVIA 235
Query: 334 ACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPE 389
AC L G + +++ + N + ++Y+ + A ++ +MP+
Sbjct: 236 ACANLGTLGLGL-WVHRLVMTQDFRNNVKVSNSLIDMYSRCGCIDLARQVFDRMPQ 290
Score = 79.0 bits (193), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 64/240 (26%), Positives = 102/240 (42%), Gaps = 38/240 (15%)
Query: 57 AVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKN 116
A+I + ++ + + +M +G P+ T +++ +CA G + G H L +
Sbjct: 197 ALIGGFVKKDYHEEALECFREMQLSGVAPDYVTVIAVIAACANLGTLGLGLWVHRLVMTQ 256
Query: 117 GVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELF 176
+ V NSLI+MY G +D AR +F +M R L+SWNSI
Sbjct: 257 DFRNNVKVSNSLIDMYSRCGCIDLARQVFDRMPQRTLVSWNSI----------------- 299
Query: 177 DIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFN 236
I G++ +G +L F M + GF+ + + L AC +
Sbjct: 300 --------------IVGFAVNGLADEALSYFNSMQEEGFKPDGVSYTGALMACSHAGLIG 345
Query: 237 EGRSV--HGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILG 294
EG + H VR L P I L+DLYS+ ++E A V +M + N +ILG
Sbjct: 346 EGLRIFEHMKRVRRIL-PRIEHYGCLVDLYSRAGRLEEALNVLKNMPMKP----NEVILG 400
>gi|297814598|ref|XP_002875182.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297321020|gb|EFH51441.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 605
Score = 246 bits (628), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 151/516 (29%), Positives = 261/516 (50%), Gaps = 55/516 (10%)
Query: 2 KQLLQIQAHLITS---GLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAV 58
++L+QIQA+ I S + FN IN S S Y +F ++ P N++
Sbjct: 45 RELMQIQAYAIKSHQEDVSFNTKL--INFCTESPTESSMSYARHLFDAMSEPDIVIFNSI 102
Query: 59 IKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGV 118
+ YS S P + +++++++ +P++YTF SL +CA +E G H L++K GV
Sbjct: 103 ARGYSRSTNPLEVFNLFVEILEDDLLPDNYTFPSLLKACAVAKALEEGRQLHCLSMKLGV 162
Query: 119 DFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDI 178
D + V +LINMY +C D+ AA +FD
Sbjct: 163 DDNVYVCPTLINMY-----TECE--------------------------DVDAARCVFDR 191
Query: 179 MPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEG 238
+ E VV +N MI+GY++ P +L LFREM + N+ T+ SVL++C + G
Sbjct: 192 IVEPCVVCYNAMITGYARRNRPNEALSLFREMQGKNLKPNEITLLSVLSSCALLGSLDLG 251
Query: 239 RSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIH 298
+ +H Y + + ++TALID+++KC ++ A +F++M ++ W+AMI+ + H
Sbjct: 252 KWIHEYAKKHGFCKYVKVNTALIDMFAKCGSLDDAVSIFENMRYKDTQAWSAMIVAYANH 311
Query: 299 GKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIK 358
G+ E + +F + ++ PDEITF+G++ AC L+ EGR+YF M+ + I
Sbjct: 312 GQAENSMLMFERM-----RSENVQPDEITFLGLLNACSHTGLVEEGREYFSWMVHEFGIV 366
Query: 359 PNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVE 418
P+ HY M +L A E+A E + K+P +S ++W LL+ C + + E
Sbjct: 367 PSIKHYGSMVDLLGRAGHLEDAYEFIDKLP-----ISPTPMLWRILLAACSSHNNLELAE 421
Query: 419 RLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLKEVV 478
++++ +++D Y L N+YA +WE V +R++MK R+ ++PGC +++ VV
Sbjct: 422 KVSERILELDDSHGGDYVILSNLYARNKKWEAVDSLRKVMKDRKAVKVPGCSSIEVNNVV 481
Query: 479 EKLKVGHFWRGGMKEEVNKMMECRQSRSLATVSKQL 514
+ F G+K K+ R+L + K+L
Sbjct: 482 HEF----FSGDGVKSATTKL-----HRALDEMVKEL 508
>gi|15227144|ref|NP_179798.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75206010|sp|Q9SHZ8.1|PP168_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g22070
gi|4587589|gb|AAD25817.1| hypothetical protein [Arabidopsis thaliana]
gi|330252165|gb|AEC07259.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 786
Score = 246 bits (628), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 139/454 (30%), Positives = 243/454 (53%), Gaps = 16/454 (3%)
Query: 35 GSPDYTVLVFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFM-PNSYTFVSL 93
G D + F+ + N++I ++ + + + +M+++ + P+ +T S+
Sbjct: 226 GQMDLAMAQFEQMAERDIVTWNSMISGFNQRGYDLRALDIFSKMLRDSLLSPDRFTLASV 285
Query: 94 FGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDL 153
+CA + G H + G D V+N+LI+MY G ++ AR + Q +DL
Sbjct: 286 LSACANLEKLCIGKQIHSHIVTTGFDISGIVLNALISMYSRCGGVETARRLIEQRGTKDL 345
Query: 154 I--SWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMM 211
+ +++ G+++ GDM+ A +F + +R+VV+W MI GY + G+ G ++ LFR M+
Sbjct: 346 KIEGFTALLDGYIKLGDMNQAKNIFVSLKDRDVVAWTAMIVGYEQHGSYGEAINLFRSMV 405
Query: 212 KSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVE 271
G R N T+A++L+ A + G+ +HG V++ ++ + ALI +Y+K +
Sbjct: 406 GGGQRPNSYTLAAMLSVASSLASLSHGKQIHGSAVKSGEIYSVSVSNALITMYAKAGNIT 465
Query: 272 VAQRVFDSM-ADRNLVCWNAMILGHCIHGKPEEGIKLF-TALVNGTVAGGSISPDEITFI 329
A R FD + +R+ V W +MI+ HG EE ++LF T L+ G + PD IT++
Sbjct: 466 SASRAFDLIRCERDTVSWTSMIIALAQHGHAEEALELFETMLMEG------LRPDHITYV 519
Query: 330 GVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPE 389
GV AC A L+ +GR+YF M D KI P +HY CM +L+ A L +EA+E + KMP
Sbjct: 520 GVFSACTHAGLVNQGRQYFDMMKDVDKIIPTLSHYACMVDLFGRAGLLQEAQEFIEKMPI 579
Query: 390 DNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWE 449
+ D + W SLLS CR + + + A+ + ++P++ Y L N+Y+ G+WE
Sbjct: 580 EPD-----VVTWGSLLSACRVHKNIDLGKVAAERLLLLEPENSGAYSALANLYSACGKWE 634
Query: 450 DVARVRELMKKRRMGRMPGCRLVDLKEVVEKLKV 483
+ A++R+ MK R+ + G +++K V V
Sbjct: 635 EAAKIRKSMKDGRVKKEQGFSWIEVKHKVHVFGV 668
Score = 164 bits (414), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 127/490 (25%), Positives = 210/490 (42%), Gaps = 72/490 (14%)
Query: 35 GSPDYTVLVFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLF 94
G D T F + + +I Y N + + M+K G P +T ++
Sbjct: 94 GDMDSTCEFFDQLPQRDSVSWTTMIVGYKNIGQYHKAIRVMGDMVKEGIEPTQFTLTNVL 153
Query: 95 GSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLI 154
S A T C+E G H +K G+ + V NSL+NMY G A+ +F +M RD+
Sbjct: 154 ASVAATRCMETGKKVHSFIVKLGLRGNVSVSNSLLNMYAKCGDPMMAKFVFDRMVVRDIS 213
Query: 155 SWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSG 214
SWN++++ H++ G M A F+ M ER++V+WN MISG+++ G +L +F +M++
Sbjct: 214 SWNAMIALHMQVGQMDLAMAQFEQMAERDIVTWNSMISGFNQRGYDLRALDIFSKMLRDS 273
Query: 215 FRGNDK-TMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVA 273
D+ T+ASVL+AC + G+ +H + V T + I+ ALI +YS+C VE A
Sbjct: 274 LLSPDRFTLASVLSACANLEKLCIGKQIHSHIVTTGFDISGIVLNALISMYSRCGGVETA 333
Query: 274 QR---------------------------------VFDSMADRNLVCWNAMILGHCIHGK 300
+R +F S+ DR++V W AMI+G+ HG
Sbjct: 334 RRLIEQRGTKDLKIEGFTALLDGYIKLGDMNQAKNIFVSLKDRDVVAWTAMIVGYEQHGS 393
Query: 301 PEEGIKLFTALVNG--------------------------TVAGGSISPDEITFIGVICA 334
E I LF ++V G + G ++ EI + V A
Sbjct: 394 YGEAINLFRSMVGGGQRPNSYTLAAMLSVASSLASLSHGKQIHGSAVKSGEIYSVSVSNA 453
Query: 335 CV----RAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPED 390
+ +A +T + F D + + + + M A EEA E+ M
Sbjct: 454 LITMYAKAGNITSASRAF----DLIRCERDTVSWTSMIIALAQHGHAEEALELFETML-- 507
Query: 391 NDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDP--QDFSRYQFLLNVYAVAGQW 448
+ + + I +V + S C G V + D+D S Y +++++ AG
Sbjct: 508 MEGLRPDHITYVGVFSACTHAGLVNQGRQYFDMMKDVDKIIPTLSHYACMVDLFGRAGLL 567
Query: 449 EDVARVRELM 458
++ E M
Sbjct: 568 QEAQEFIEKM 577
Score = 136 bits (343), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 78/272 (28%), Positives = 135/272 (49%), Gaps = 27/272 (9%)
Query: 108 MCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSG 167
+ H +K+G+ F + +MN+L+N+Y G AR +F +M R SWN+++S + + G
Sbjct: 35 LVHCRVIKSGLMFSVYLMNNLMNVYSKTGYALHARKLFDEMPLRTAFSWNTVLSAYSKRG 94
Query: 168 DMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLT 227
DM + E FD +P+R+ VSW MI GY G ++++ +M+K G T+ +VL
Sbjct: 95 DMDSTCEFFDQLPQRDSVSWTTMIVGYKNIGQYHKAIRVMGDMVKEGIEPTQFTLTNVLA 154
Query: 228 ACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVC 287
+ + G+ VH + V+ L+ N+ + +L+++Y+KC +A+ VFD M R++
Sbjct: 155 SVAATRCMETGKKVHSFIVKLGLRGNVSVSNSLLNMYAKCGDPMMAKFVFDRMVVRDISS 214
Query: 288 WNAMILGHCIHGK-----------PEEGIKLFTALVNGTVAGGS---------------- 320
WNAMI H G+ E I + ++++G G
Sbjct: 215 WNAMIALHMQVGQMDLAMAQFEQMAERDIVTWNSMISGFNQRGYDLRALDIFSKMLRDSL 274
Query: 321 ISPDEITFIGVICACVRAELLTEGRKYFRQMI 352
+SPD T V+ AC E L G++ ++
Sbjct: 275 LSPDRFTLASVLSACANLEKLCIGKQIHSHIV 306
>gi|225427070|ref|XP_002275784.1| PREDICTED: pentatricopeptide repeat-containing protein At1g31920
[Vitis vinifera]
gi|297742017|emb|CBI33804.3| unnamed protein product [Vitis vinifera]
Length = 605
Score = 246 bits (628), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 149/485 (30%), Positives = 251/485 (51%), Gaps = 47/485 (9%)
Query: 1 MKQLLQIQAHLITSGLFFNNSFWTINLLKHSA--DFGSPDYTVLVFKCINNPGTFCVNAV 58
M++ Q A ++ GLF +SF NL+ A D+GS DY +F+ ++ G+F N +
Sbjct: 44 MEEFKQSHARILKLGLF-GDSFCASNLVATCALSDWGSMDYACSIFRQMDELGSFQFNTM 102
Query: 59 IKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGV 118
++ + ++ ++ Y +M + G P+++T+ +L +CA+ VE G H LK G+
Sbjct: 103 MRGHVKDMNTEEALITYKEMAERGVKPDNFTYPTLLKACARLPAVEEGMQVHAHILKLGL 162
Query: 119 DFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDI 178
+ ++ V NSLI+MYG + G++ +F+
Sbjct: 163 ENDVFVQNSLISMYG-------------------------------KCGEIGVCCAVFEQ 191
Query: 179 MPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGF-RGNDKTMASVLTACGRSARFNE 237
M ER+V SW+ +I+ ++ G L+L +M G+ R + + SVL+AC +
Sbjct: 192 MNERSVASWSALITAHASLGMWSDCLRLLGDMSNEGYWRAEESILVSVLSACTHLGALDL 251
Query: 238 GRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCI 297
GRSVHG+ +R N+I++T+LI++Y KC + +F MA +N + ++ MI G +
Sbjct: 252 GRSVHGFLLRNVSGLNVIVETSLIEMYLKCGSLYKGMCLFQKMAKKNKLSYSVMISGLAM 311
Query: 298 HGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKI 357
HG EG+++FT ++ + PD+I ++GV+ AC A L+ EG + F +M + I
Sbjct: 312 HGYGREGLRIFTEMLE-----QGLEPDDIVYVGVLNACSHAGLVQEGLQCFNRMKLEHGI 366
Query: 358 KPNFAHYWCMANLYAGAELTEEAEEILRKMP-EDNDNMSFESIMWVSLLSLCRFQGAVAM 416
+P HY CM +L A +EA E+++ MP E ND ++W SLLS + +
Sbjct: 367 EPTIQHYGCMVDLMGRAGKIDEALELIKSMPMEPND------VLWRSLLSASKVHNNLQA 420
Query: 417 VERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLKE 476
E AK +D Q S Y L N+YA A +WEDVA+ R M + + + PG LV++K
Sbjct: 421 GEIAAKQLFKLDSQKASDYVVLSNMYAQAQRWEDVAKTRTNMFSKGLSQRPGFSLVEVKR 480
Query: 477 VVEKL 481
+ +
Sbjct: 481 KMHRF 485
>gi|255539585|ref|XP_002510857.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223549972|gb|EEF51459.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 641
Score = 246 bits (628), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 142/448 (31%), Positives = 245/448 (54%), Gaps = 21/448 (4%)
Query: 14 SGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSNSCVPDQGVV 73
S LF NS L++ FG Y VF +++ N++I YS + +
Sbjct: 190 SYLFIENS-----LIRMYGYFGELGYAQKVFDKMDDRDLVSWNSLICGYSQCNRFKEVLD 244
Query: 74 FYLQMIKNGFMPNSYTFVSLFGSCA---KTGCVERGGMCHGLALKNGVDFELPVMNSLIN 130
+ M + +S T V + +C+ + G V+ M + K+ VD ++ + NSLI+
Sbjct: 245 LFNLMREANVTADSVTMVKVILACSYLCEDGVVD--SMVKYIEDKH-VDIDVYLGNSLID 301
Query: 131 MYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIM 190
MYG G +D AR +F +M ++++SWN++++G+ +GD+ AA +LF+ MP RNV+SW M
Sbjct: 302 MYGRRGLVDLARRVFDRMQEKNIVSWNAMLTGYATAGDLVAAKKLFNEMPIRNVISWTCM 361
Query: 191 ISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSL 250
ISG +++ +LKLF+EMM + + ++ T++SVL+AC + G++VH Y R +
Sbjct: 362 ISGCAQANQCSDALKLFQEMMDANVKPDEITVSSVLSACSHLGLLDTGQTVHEYMCRHDI 421
Query: 251 KPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTA 310
K ++ + ALID+Y KC V+ A VF M ++ V W +MILG ++G + +LF+
Sbjct: 422 KSDVYVGNALIDMYCKCGVVDKALEVFHDMKKKDSVSWTSMILGLAVNGFVDNVFELFSQ 481
Query: 311 LVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANL 370
++ + P +FIG++ AC A L+ +G +YF M Y ++P HY C+ +L
Sbjct: 482 MLR-----DGLQPTHGSFIGILLACTHAGLVDKGLEYFESMEHVYGLRPEMKHYGCVVDL 536
Query: 371 YAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQ 430
+ + + A E +++MP D ++W LLS C+ + + E +++DP
Sbjct: 537 LSRSGELDRAYEFIKQMPVVPD-----VVLWRILLSACKLHRNLVLAEIATSKLLELDPS 591
Query: 431 DFSRYQFLLNVYAVAGQWEDVARVRELM 458
+ Y L N YA + +W+D +R+R+LM
Sbjct: 592 NSGNYVLLSNTYAGSDRWDDASRMRDLM 619
Score = 140 bits (353), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 103/389 (26%), Positives = 171/389 (43%), Gaps = 65/389 (16%)
Query: 44 FKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKN-GFMPNSYTFVSLFGSCAKTGC 102
F I P N +I+ S S P++ +V Y ++ N G + ++ TF+ LF +C++
Sbjct: 113 FIQIGQPTLLIFNYLIRGLSQSENPNEAIVMYSDLMYNQGILGDNLTFIYLFKACSRVKD 172
Query: 103 VERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSG 162
V G + H LK G L + NSLI MYG FG + A+ +F +M RDL+SWNS++ G
Sbjct: 173 VLHGQVFHVQVLKLGFGSYLFIENSLIRMYGYFGELGYAQKVFDKMDDRDLVSWNSLICG 232
Query: 163 HVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTM 222
+ + +LF++M E NV + ++ TM
Sbjct: 233 YSQCNRFKEVLDLFNLMREANVTADSV-------------------------------TM 261
Query: 223 ASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMAD 282
V+ AC S+ Y + ++ L +LID+Y + V++A+RVFD M +
Sbjct: 262 VKVILACSYLCEDGVVDSMVKYIEDKHVDIDVYLGNSLIDMYGRRGLVDLARRVFDRMQE 321
Query: 283 RNLVCWNAMILGHCIHGKPEEGIKLF-----------TALVNGTVAG------------- 318
+N+V WNAM+ G+ G KLF T +++G
Sbjct: 322 KNIVSWNAMLTGYATAGDLVAAKKLFNEMPIRNVISWTCMISGCAQANQCSDALKLFQEM 381
Query: 319 --GSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAEL 376
++ PDEIT V+ AC LL G+ M + IK + + ++Y +
Sbjct: 382 MDANVKPDEITVSSVLSACSHLGLLDTGQTVHEYMCR-HDIKSDVYVGNALIDMYCKCGV 440
Query: 377 TEEAEEILRKMPEDNDNMSFESIMWVSLL 405
++A E+ M + +S+ W S++
Sbjct: 441 VDKALEVFHDMKKK------DSVSWTSMI 463
>gi|147856457|emb|CAN80769.1| hypothetical protein VITISV_013866 [Vitis vinifera]
Length = 761
Score = 246 bits (628), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 143/448 (31%), Positives = 237/448 (52%), Gaps = 27/448 (6%)
Query: 44 FKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCV 103
F C+ NA++ Y+ + + ++ + + +M+ G P+ T+V++ +C+
Sbjct: 217 FDCMPERSVVSWNAMLSGYAQNGLAEEVLRLFDEMVNAGIEPDETTWVTVISACSS---- 272
Query: 104 ERGGMCHGLAL-----KNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSP-RDLISWN 157
RG C +L + + V +L++MY G++ AR +F ++ R+ ++WN
Sbjct: 273 -RGDPCLAASLVRTLHQKQIQLNCFVRTALLDMYAKCGSIGAARRIFDELGAYRNSVTWN 331
Query: 158 SIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRG 217
+++S + R G++ +A ELF+ MP RNVV+WN MI+GY+++G +++LF+EM+ +
Sbjct: 332 AMISAYTRVGNLDSARELFNTMPGRNVVTWNSMIAGYAQNGQSAMAIELFKEMITAKKLT 391
Query: 218 NDK-TMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRV 276
D+ TM SV++ACG G V + +K +I A+I +YS+C +E A+RV
Sbjct: 392 PDEVTMVSVISACGHLGALELGNWVVRFLTENQIKLSISGHNAMIFMYSRCGSMEDAKRV 451
Query: 277 FDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACV 336
F MA R++V +N +I G HG E I L + T+ G I PD +TFIGV+ AC
Sbjct: 452 FQEMATRDVVSYNTLISGFAAHGHGVEAINLMS-----TMKEGGIEPDRVTFIGVLTACS 506
Query: 337 RAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSF 396
A LL EGRK F + D P HY CM +L E+A+ + +MP M
Sbjct: 507 HAGLLEEGRKVFESIKD-----PAIDHYACMVDLLGRVGELEDAKRTMERMP-----MEP 556
Query: 397 ESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRE 456
+ ++ SLL+ R V + E A +++P + + L N+YA AG+W+DV R+RE
Sbjct: 557 HAGVYGSLLNASRIHKQVELGELAANKLFELEPDNSGNFILLSNIYASAGRWKDVERIRE 616
Query: 457 LMKKRRMGRMPGCRLVDLKEVVEKLKVG 484
MKK + + G V+ + K V
Sbjct: 617 AMKKGGVKKTTGWSWVEYGGKLHKFIVA 644
Score = 172 bits (436), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 138/561 (24%), Positives = 240/561 (42%), Gaps = 119/561 (21%)
Query: 3 QLLQIQAHLITSGLFFNNSFWTINLLKHSADF-GSPDYTVLVFKCINNPGTFCVNAVIKA 61
L Q+ A +I + L +N +W L+ H P YT L+F NP F ++++
Sbjct: 16 HLRQLHAQIIHNSLHHHN-YWVALLINHCTRLRAPPHYTHLLFNSTLNPNVFVFTSMLRF 74
Query: 62 YSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFE 121
YS+ + V+ + M G P+++ + L S G G H L L +G D
Sbjct: 75 YSHLQDHAKVVLMFEHMQGCGVRPDAFVYPILIKSAGNGGI---GFHAHVLKLGHGSD-- 129
Query: 122 LPVMNSLINMYGCFGAMDCARNMFVQ---------------------------------M 148
V N++I+MY G + AR +F + M
Sbjct: 130 AFVRNAVIDMYARLGPIGHARKVFDEIPDYERKVADWNAMVSGYWKWESEGQAQWLFDVM 189
Query: 149 SPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFR 208
R++I+W ++V+G+ + D+ AA FD MPER+VVSWN M+SGY+++G L+LF
Sbjct: 190 PERNVITWTAMVTGYAKVKDLEAARRYFDCMPERSVVSWNAMLSGYAQNGLAEEVLRLFD 249
Query: 209 EMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQ 268
EM+ +G ++ T +V++AC S+ + ++ N + TAL+D+Y+KC
Sbjct: 250 EMVNAGIEPDETTWVTVISACSSRGDPCLAASLVRTLHQKQIQLNCFVRTALLDMYAKCG 309
Query: 269 KVEVAQRVFD--------------------------------SMADRNLVCWNAMILGHC 296
+ A+R+FD +M RN+V WN+MI G+
Sbjct: 310 SIGAARRIFDELGAYRNSVTWNAMISAYTRVGNLDSARELFNTMPGRNVVTWNSMIAGYA 369
Query: 297 IHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYK 356
+G+ I+LF ++ ++PDE+T + VI AC L G R + + +
Sbjct: 370 QNGQSAMAIELFKEMITAK----KLTPDEVTMVSVISACGHLGALELGNWVVRFLTE-NQ 424
Query: 357 IKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIM---------------- 400
IK + + + M +Y+ E+A+ + ++M D +S+ +++
Sbjct: 425 IKLSISGHNAMIFMYSRCGSMEDAKRVFQEMAT-RDVVSYNTLISGFAAHGHGVEAINLM 483
Query: 401 --------------WVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAG 446
++ +L+ C G ++E K F + Y ++++ G
Sbjct: 484 STMKEGGIEPDRVTFIGVLTACSHAG---LLEEGRKVFESIKDPAIDHYACMVDLLGRVG 540
Query: 447 QWEDVARVRELMKKRRMGRMP 467
+ ED KR M RMP
Sbjct: 541 ELEDA--------KRTMERMP 553
>gi|224069701|ref|XP_002303023.1| predicted protein [Populus trichocarpa]
gi|222844749|gb|EEE82296.1| predicted protein [Populus trichocarpa]
Length = 621
Score = 246 bits (627), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 146/498 (29%), Positives = 242/498 (48%), Gaps = 25/498 (5%)
Query: 3 QLLQIQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAY 62
Q+ I A +I + + F LL+ ++ S Y +F NP + A+I
Sbjct: 47 QIPPIYAKIIRNH-HHQDPFVVFELLRVCSNLNSIGYASKIFSHTQNPNVYLYTALIDGL 105
Query: 63 SNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFEL 122
SC G+ Y QMI + +P+SY S+ +C ++ G H LK G+
Sbjct: 106 VLSCYYTDGIHLYYQMINSSLVPDSYAVTSVLKACGCHLALKEGREVHSQVLKLGLSSNR 165
Query: 123 PVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPER 182
+ LI +YG GA + AR +F +M RD+++ +++ + G +
Sbjct: 166 SIRIKLIELYGKCGAFEDARRVFDEMPERDVVASTVMINYYFDHGI-------------K 212
Query: 183 NVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVH 242
+ V W MI G ++G +L++FR M + N+ T+ VL+AC GR V
Sbjct: 213 DTVCWTAMIDGLVRNGESNRALEVFRNMQREDVMPNEVTIVCVLSACSELGALQLGRWVR 272
Query: 243 GYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPE 302
Y + ++ N + ALI++YS+C ++ AQRVF+ M ++N++ +N+MI+G +HGK
Sbjct: 273 SYMDKHRIELNHFVGGALINMYSRCGDIDEAQRVFEQMKEKNVITYNSMIMGFALHGKSV 332
Query: 303 EGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFA 362
E ++LF L+ +P +TF+GV+ AC L G + F M Y I+P
Sbjct: 333 EAVELFRGLIK-----QGFTPSSVTFVGVLNACSHGGLAELGFEIFHSMAKDYGIEPQIE 387
Query: 363 HYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAK 422
HY CM +L EEA +R M D+ +M +LLS C+ G + + ER+AK
Sbjct: 388 HYGCMVDLLGRLGRLEEAYSFIRMMKVAPDH-----VMLGALLSACKIHGNLELAERVAK 442
Query: 423 SFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLKEVVEKLK 482
S V D Y L N Y+ +G+W++ A VR M++ + + PGC +++ + +
Sbjct: 443 SLVACKNADSGTYILLSNAYSSSGKWKEAAEVRTNMREEGIEKEPGCSSIEVNNEIHEFL 502
Query: 483 VGHFWRGGMKEEVNKMME 500
+G R KE++ K +E
Sbjct: 503 LGDL-RHPQKEKIYKKLE 519
>gi|357436395|ref|XP_003588473.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355477521|gb|AES58724.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 827
Score = 246 bits (627), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 128/428 (29%), Positives = 230/428 (53%), Gaps = 15/428 (3%)
Query: 56 NAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALK 115
N +I + ++ + D ++ + ++ G P+S+T S+ A C+ +G H +A+
Sbjct: 375 NCMISGHVDNFMFDDALMLFRDLLMEGIEPDSFTLGSILTGFADMTCIRQGKEIHSIAIV 434
Query: 116 NGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHEL 175
G+ V +L+ MY + A+ F ++S RD +WN+++SG+ R + EL
Sbjct: 435 KGLQSNSFVGGALVEMYCKCNDIIAAQMAFDEISERDTSTWNALISGYARCNQIGKIREL 494
Query: 176 FDIMP----ERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGR 231
+ M E NV +WN +++G ++ +++LF EM S R + T+ +L AC +
Sbjct: 495 VERMKSDGFEPNVYTWNSILAGLVENKQYDLAMQLFNEMQVSSLRPDIYTVGIILAACSK 554
Query: 232 SARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAM 291
A + G+ VH Y++R + + L+D+Y+KC ++ +V++ +++ NLVC NAM
Sbjct: 555 LATIHRGKQVHAYSIRAGYDSDAHIGATLVDMYAKCGSIKHCYQVYNKISNPNLVCHNAM 614
Query: 292 ILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQM 351
+ + +HG EEGI +F +++ V PD +TF+ V+ +CV A + G + F M
Sbjct: 615 LTAYAMHGHGEEGIVIFRRMLDSRV-----RPDHVTFLSVLSSCVHAGSIKIGYECFYLM 669
Query: 352 IDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQ 411
+ Y I P HY CM +L + A +EA ++++ MP M +S+ W +LL C
Sbjct: 670 -ETYNITPTLKHYTCMVDLLSRAGKLDEAYQLIKNMP-----MEADSVTWSALLGGCFIH 723
Query: 412 GAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRL 471
VA+ E A+ ++++P + Y L N+YA AG+W D+A+ RELM + M + PGC
Sbjct: 724 KEVALGEIAAEKLIELEPSNTGNYVLLANLYASAGRWHDLAKTRELMNDKGMQKSPGCSW 783
Query: 472 VDLKEVVE 479
++ ++ V
Sbjct: 784 IEDRDGVH 791
Score = 145 bits (365), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 122/472 (25%), Positives = 224/472 (47%), Gaps = 39/472 (8%)
Query: 6 QIQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSNS 65
Q+ +H I +G F+N++F LL+ + S + +F + AV++ + N
Sbjct: 52 QLHSHSIKTG-FYNHNFVQTKLLQMYSINSSFEDAWHMFDKMTLKNLHSWTAVLRLHLNM 110
Query: 66 CVPDQGVVFYLQMIKNGFMP--NSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELP 123
+ +G + + + + +G + + F + C G +E G HG+ LK+G +
Sbjct: 111 GLFYKGFMLFEEFLCDGLGEKLDFFVFPVVLNICCGLGDLELGRQVHGMVLKHGFVTNVY 170
Query: 124 VMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMP--- 180
V N+LI+MYG G++D A+ + M+ +D +SWNSI++ V +G + A +L + M
Sbjct: 171 VGNALIDMYGKCGSLDEAKKVLEGMTQKDCVSWNSIITACVANGVVYEALDLLENMLLSE 230
Query: 181 -ERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGR 239
E NVV+W+ +I G+S + S++LF M+ +G + +T+ASVL AC R G+
Sbjct: 231 LEPNVVTWSAVIGGFSSNAYDVESVELFARMVGAGVAPDARTLASVLPACSRMKWLFVGK 290
Query: 240 SVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHG 299
+HGY VR L N + AL+ +Y +C ++ A ++F A + +N MI+G+ +G
Sbjct: 291 ELHGYIVRHELFSNGFVANALVGMYRRCGDMKSAFKIFSKFARKCAASYNTMIVGYLENG 350
Query: 300 KPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKP 359
+ +LF + + D I++ +I V + + FR ++ I+P
Sbjct: 351 NVGKAKELFYQMEQ-----EGVERDRISWNCMISGHVDNFMFDDALMLFRDLL-MEGIEP 404
Query: 360 NFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVER 419
+ + +A + +EI SI V L F G A+VE
Sbjct: 405 DSFTLGSILTGFADMTCIRQGKEI-------------HSIAIVKGLQSNSFVGG-ALVEM 450
Query: 420 LAK---------SFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRR 462
K +F ++ +D S + L++ YA Q + ++REL+++ +
Sbjct: 451 YCKCNDIIAAQMAFDEISERDTSTWNALISGYARCNQ---IGKIRELVERMK 499
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 49/250 (19%), Positives = 107/250 (42%), Gaps = 32/250 (12%)
Query: 50 PGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMC 109
P + N+++ + D + + +M + P+ YT + +C+K + RG
Sbjct: 505 PNVYTWNSILAGLVENKQYDLAMQLFNEMQVSSLRPDIYTVGIILAACSKLATIHRGKQV 564
Query: 110 HGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDM 169
H +++ G D + + +L++MY + G +
Sbjct: 565 HAYSIRAGYDSDAHIGATLVDMYA-------------------------------KCGSI 593
Query: 170 SAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTAC 229
+++++ + N+V N M++ Y+ G+ + +FR M+ S R + T SVL++C
Sbjct: 594 KHCYQVYNKISNPNLVCHNAMLTAYAMHGHGEEGIVIFRRMLDSRVRPDHVTFLSVLSSC 653
Query: 230 GRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMA-DRNLVCW 288
+ G ++ P + T ++DL S+ K++ A ++ +M + + V W
Sbjct: 654 VHAGSIKIGYECFYLMETYNITPTLKHYTCMVDLLSRAGKLDEAYQLIKNMPMEADSVTW 713
Query: 289 NAMILGHCIH 298
+A++ G IH
Sbjct: 714 SALLGGCFIH 723
Score = 68.9 bits (167), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 61/271 (22%), Positives = 104/271 (38%), Gaps = 59/271 (21%)
Query: 106 GGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVR 165
G H ++K G V L+ MY + + A +MF +M+ ++L SW +++ H+
Sbjct: 50 GKQLHSHSIKTGFYNHNFVQTKLLQMYSINSSFEDAWHMFDKMTLKNLHSWTAVLRLHLN 109
Query: 166 SGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASV 225
G LF+ + G G L F V
Sbjct: 110 MGLFYKGFMLFE----------EFLCDGL------GEKLDFF-------------VFPVV 140
Query: 226 LTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNL 285
L C GR VHG ++ N+ + ALID+Y KC ++ A++V + M ++
Sbjct: 141 LNICCGLGDLELGRQVHGMVLKHGFVTNVYVGNALIDMYGKCGSLDEAKKVLEGMTQKDC 200
Query: 286 VCWNAMILGHCIHGKPEEGIKL---------------FTALVNG---------------T 315
V WN++I +G E + L ++A++ G
Sbjct: 201 VSWNSIITACVANGVVYEALDLLENMLLSELEPNVVTWSAVIGGFSSNAYDVESVELFAR 260
Query: 316 VAGGSISPDEITFIGVICACVRAELLTEGRK 346
+ G ++PD T V+ AC R + L G++
Sbjct: 261 MVGAGVAPDARTLASVLPACSRMKWLFVGKE 291
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 55/223 (24%), Positives = 107/223 (47%), Gaps = 16/223 (7%)
Query: 6 QIQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSNS 65
Q+ A+ I +G + +++ L+ A GS + V+ I+NP C NA++ AY+
Sbjct: 563 QVHAYSIRAG-YDSDAHIGATLVDMYAKCGSIKHCYQVYNKISNPNLVCHNAMLTAYAMH 621
Query: 66 CVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVM 125
++G+V + +M+ + P+ TF+S+ SC G ++ G C L + L
Sbjct: 622 GHGEEGIVIFRRMLDSRVRPDHVTFLSVLSSCVHAGSIKIGYECFYLMETYNITPTLKHY 681
Query: 126 NSLINMYGCFGAMDCARNMFVQMS-PRDLISWNSIVSG-----HVRSGDMSAAHELFDIM 179
++++ G +D A + M D ++W++++ G V G++ AA +L ++
Sbjct: 682 TCMVDLLSRAGKLDEAYQLIKNMPMEADSVTWSALLGGCFIHKEVALGEI-AAEKLIELE 740
Query: 180 PERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTM 222
P N ++ ++ + Y+ +G L RE+M NDK M
Sbjct: 741 PS-NTGNYVLLANLYASAGRWH-DLAKTRELM------NDKGM 775
Score = 45.4 bits (106), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 44/194 (22%), Positives = 78/194 (40%), Gaps = 10/194 (5%)
Query: 221 TMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSM 280
T + T S G+ +H ++++T + + T L+ +YS E A +FD M
Sbjct: 33 TSTTYSTILQSSNSLTLGKQLHSHSIKTGFYNHNFVQTKLLQMYSINSSFEDAWHMFDKM 92
Query: 281 ADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAEL 340
+NL W A++ H G +G LF + G D F V+ C
Sbjct: 93 TLKNLHSWTAVLRLHLNMGLFYKGFMLFEEFL---CDGLGEKLDFFVFPVVLNICCGLGD 149
Query: 341 LTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIM 400
L GR+ M+ + N + ++Y +EA+++L M + + +
Sbjct: 150 LELGRQ-VHGMVLKHGFVTNVYVGNALIDMYGKCGSLDEAKKVLEGMTQK------DCVS 202
Query: 401 WVSLLSLCRFQGAV 414
W S+++ C G V
Sbjct: 203 WNSIITACVANGVV 216
>gi|147791850|emb|CAN61826.1| hypothetical protein VITISV_027628 [Vitis vinifera]
Length = 688
Score = 246 bits (627), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 156/511 (30%), Positives = 243/511 (47%), Gaps = 62/511 (12%)
Query: 1 MKQLLQIQAHLITSGLFFNNSFWTINLLKHSA--DFGSPDYTVLVFKCINNPGTFCVNAV 58
M+ L + A +I GL N + L+ A D G Y +F I P F N++
Sbjct: 127 MRGLKLLHAQIILHGLT-NETLTLGKLISFCAVDDAGDLQYAQRMFDQIPQPNKFMYNSL 185
Query: 59 IKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGV 118
I+ YSNS P V+ + +MI +G PN +T + +C + HGLA+K G+
Sbjct: 186 IRGYSNSDDPIDAVLLFRRMICSGLSPNEFTLPFVLKACGCKSAYWEAVLVHGLAIKLGI 245
Query: 119 DFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWN--------------------- 157
+ V N+LI +Y G + CAR +F ++ + L+SWN
Sbjct: 246 GSLVFVQNALIAVYVVCGLIHCARKLFDDITDKTLVSWNSMIEITGVKIDIIVRNALXDM 305
Query: 158 --------------------------SIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMI 191
S++S + + G + A ++FD MP +NVVSWN MI
Sbjct: 306 YAKCGNLHSAQAIFDRTQEKNVVSWTSMISAYAQHGSIEVARQIFDQMPGKNVVSWNSMI 365
Query: 192 SGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLK 251
S Y + G +L LF +M S ++ T+ S+L AC + G+ +H Y +
Sbjct: 366 SCYLREGQYREALDLFNKMRNSRVVPDEATLVSILAACSQLGDLVMGKKIHNYILSNKGA 425
Query: 252 PNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTAL 311
+ L +LID+Y+KC V A +F M +NLV WN +I +HG E IKLF +
Sbjct: 426 YGVTLYNSLIDMYAKCGPVVTALDIFLEMPGKNLVSWNVIIGALALHGCGLEAIKLFEEM 485
Query: 312 -VNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANL 370
+GT+ PDEIT G++ AC + L+ G YF +M Y++ HY CM +L
Sbjct: 486 QADGTL------PDEITLTGLLSACSHSGLVDMGLYYFDRMGVIYRVXREIEHYACMVDL 539
Query: 371 YAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQ 430
L EA E++ +MP M + ++W +LL CR G V + +++ K ++++P
Sbjct: 540 LGRGGLLGEAIELIGRMP-----MKPDVVVWGALLGACRIHGNVEIGKQILKQLLELEPH 594
Query: 431 DFSRYQFLLNVYAVAGQWEDVARVRELMKKR 461
Y + N+Y A +WEDV ++R+LM R
Sbjct: 595 SGGLYVLISNIYWEAQRWEDVKKIRKLMIDR 625
>gi|15227067|ref|NP_178398.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|218546779|sp|Q8LK93.2|PP145_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g02980
gi|3461822|gb|AAC32916.1| hypothetical protein [Arabidopsis thaliana]
gi|330250557|gb|AEC05651.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 603
Score = 246 bits (627), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 152/516 (29%), Positives = 265/516 (51%), Gaps = 53/516 (10%)
Query: 1 MKQLLQIQAHLITSGLFFNNSFWT--INLLKHSADFGSPDYTVLVFKCINNPGTFCVNAV 58
+++L+QIQA+ I S + + SF IN S S Y +F+ ++ P N++
Sbjct: 42 LRELMQIQAYAIKSHIE-DVSFVAKLINFCTESPTESSMSYARHLFEAMSEPDIVIFNSM 100
Query: 59 IKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGV 118
+ YS P + +++++++G +P++YTF SL +CA +E G H L++K G+
Sbjct: 101 ARGYSRFTNPLEVFSLFVEILEDGILPDNYTFPSLLKACAVAKALEEGRQLHCLSMKLGL 160
Query: 119 DFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDI 178
D + V +LINMY +C D+ +A +FD
Sbjct: 161 DDNVYVCPTLINMY-----TECE--------------------------DVDSARCVFDR 189
Query: 179 MPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEG 238
+ E VV +N MI+GY++ P +L LFREM + N+ T+ SVL++C + G
Sbjct: 190 IVEPCVVCYNAMITGYARRNRPNEALSLFREMQGKYLKPNEITLLSVLSSCALLGSLDLG 249
Query: 239 RSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIH 298
+ +H Y + S + ++TALID+++KC ++ A +F+ M ++ W+AMI+ + H
Sbjct: 250 KWIHKYAKKHSFCKYVKVNTALIDMFAKCGSLDDAVSIFEKMRYKDTQAWSAMIVAYANH 309
Query: 299 GKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIK 358
GK E+ + +F + ++ PDEITF+G++ AC + EGRKYF QM+ + I
Sbjct: 310 GKAEKSMLMFERM-----RSENVQPDEITFLGLLNACSHTGRVEEGRKYFSQMVSKFGIV 364
Query: 359 PNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVE 418
P+ HY M +L + A E+A E + K+P +S ++W LL+ C + + E
Sbjct: 365 PSIKHYGSMVDLLSRAGNLEDAYEFIDKLP-----ISPTPMLWRILLAACSSHNNLDLAE 419
Query: 419 RLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLKEVV 478
++++ ++D Y L N+YA +WE V +R++MK R+ ++PGC +++ VV
Sbjct: 420 KVSERIFELDDSHGGDYVILSNLYARNKKWEYVDSLRKVMKDRKAVKVPGCSSIEVNNVV 479
Query: 479 EKLKVGHFWRGGMKEEVNKMMECRQSRSLATVSKQL 514
+ F G+K K+ R+L + K+L
Sbjct: 480 HEF----FSGDGVKSATTKL-----HRALDEMVKEL 506
>gi|297823173|ref|XP_002879469.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297325308|gb|EFH55728.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 583
Score = 246 bits (627), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 136/475 (28%), Positives = 248/475 (52%), Gaps = 38/475 (8%)
Query: 1 MKQLLQIQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIK 60
+KQL Q+ AHLI + + S T L+ + + YT L+F + P F N+VIK
Sbjct: 22 VKQLQQVHAHLIVTSYGRSRSLLT-KLITLACSARAIAYTHLLFLSVPLPDDFLFNSVIK 80
Query: 61 AYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDF 120
+ S +P V +Y +M+ + P++YTF S+ SCA ++ G H A+ +G
Sbjct: 81 STSKLRLPLHCVAYYRRMLSSNVSPSNYTFTSVIKSCADLSALKIGKGVHCHAVVSGFGL 140
Query: 121 ELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMP 180
+ V +L+ Y + GDM AA ++FD MP
Sbjct: 141 DTYVQAALVTFYS-------------------------------KCGDMEAARQVFDRMP 169
Query: 181 ERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRS 240
E++VV+WN ++SG+ ++G ++++F +M +SGF + T S+L+AC ++ + G
Sbjct: 170 EKSVVAWNSLVSGFEQNGLAEDAIRVFYQMRESGFEPDSATFVSLLSACAQTGAISLGSW 229
Query: 241 VHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGK 300
VH Y V L N+ L TALI+LYS+C V A+ VFD M + N+ W AMI + HG
Sbjct: 230 VHQYIVSEGLDVNVKLGTALINLYSRCGDVGKAREVFDKMKETNVAAWTAMISAYGTHGY 289
Query: 301 PEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPN 360
++ + LF + + GSI P+ +TF+ V+ AC A L+ +GR +++M + Y++ P
Sbjct: 290 GKQAVDLFNKMEDDC---GSI-PNNVTFVAVLSACAHAGLVEDGRSVYKRMTESYRLIPG 345
Query: 361 FAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERL 420
H+ C+ ++ A +EA ++++ D + +W ++L C+ + +
Sbjct: 346 VEHHVCIVDMLGRAGFLDEAYRFIQQL--DATGNATAPALWTAMLGACKMHRNYDLGVEI 403
Query: 421 AKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLK 475
AK + ++P++ + L N+YA++G+ ++V+ +R+ M + + + G +++++
Sbjct: 404 AKRLIALEPENPGHHVMLSNIYALSGKTDEVSHIRDRMMRNNLRKQVGYSIIEVE 458
>gi|359479098|ref|XP_002274209.2| PREDICTED: pentatricopeptide repeat-containing protein At1g05750,
chloroplastic-like [Vitis vinifera]
Length = 518
Score = 246 bits (627), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 140/424 (33%), Positives = 224/424 (52%), Gaps = 14/424 (3%)
Query: 64 NSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGC--VERGGMCHGLALKNGVDFE 121
N +P+ F I G PN TF++L +C + GG H K G+D E
Sbjct: 67 NGQLPEAAAEFSRMQIA-GVRPNHITFLTLLSACTDFPLEGLRFGGSIHAYVRKLGLDTE 125
Query: 122 -LPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMP 180
+ V +L++MY G +D A MF +M R+ +SWN+++ G +R+G++ A LFD M
Sbjct: 126 NVMVGTALVDMYSKCGQLDLAWLMFDEMHVRNSVSWNTMIDGCMRNGEVGEAIVLFDQMS 185
Query: 181 ERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRS 240
ER+ +SW MI G+ K G +L+ FREM +G + T+ SVL AC G
Sbjct: 186 ERDAISWTSMIGGFVKKGCFEQALEWFREMQLAGVEPDYVTIISVLAACANLGALGLGLW 245
Query: 241 VHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGK 300
++ + ++ K NI + +LID+YS+C + +A++VF+ M R+LV WN+MI+G ++G
Sbjct: 246 INRFVMKQDFKDNIKISNSLIDMYSRCGCIRLARQVFEQMPKRSLVSWNSMIVGFALNGH 305
Query: 301 PEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPN 360
EE ++ F + PD ++F G + AC + L+ EG ++F M KI P
Sbjct: 306 AEEALEFFNLMRK-----EGFRPDGVSFTGALTACSHSGLVDEGLQFFDIMKRTRKISPR 360
Query: 361 FAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERL 420
HY C+ +LY+ A E+A ++ MP M ++ SLL+ CR G V + ERL
Sbjct: 361 IEHYGCLVDLYSRAGRLEDALNVIANMP-----MKPNEVVLGSLLAACRTHGDVGLAERL 415
Query: 421 AKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLKEVVEK 480
K ++DP S Y L N+YA G+W+ ++VR+ MK + + PG +++ + +
Sbjct: 416 MKYLCEVDPGSDSNYVLLSNIYAAVGRWDGASKVRKKMKALGIHKKPGFSSIEMDGSIHE 475
Query: 481 LKVG 484
G
Sbjct: 476 FVAG 479
>gi|297737809|emb|CBI27010.3| unnamed protein product [Vitis vinifera]
Length = 481
Score = 246 bits (627), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 126/354 (35%), Positives = 201/354 (56%), Gaps = 11/354 (3%)
Query: 126 NSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVV 185
N +++ Y G M AR +F +M RD++ WN+++ G+ +G++ A LF+ MPERN+
Sbjct: 79 NIMVSGYIEGGDMVEARKLFHEMPNRDVMFWNTVLKGYATNGNVEALEGLFEEMPERNIF 138
Query: 186 SWNIMISGYSKSGNPGCSLKLFREMM-KSGFRGNDKTMASVLTACGRSARFNEGRSVHGY 244
SWN +I GY+ +G L F+ M+ +S ND T+ +VL+AC R + G+ VH Y
Sbjct: 139 SWNALIGGYAHNGLFFEVLGSFKRMLSESDVPPNDATLVTVLSACARLGALDLGKWVHVY 198
Query: 245 TVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEG 304
+ LK N+ + AL+D+Y+KC +E A VF M ++L+ WN +I G +H + +
Sbjct: 199 AESSGLKGNVYVGNALMDMYAKCGIIENAISVFRGMDTKDLISWNTLIGGLAMHSRGADA 258
Query: 305 IKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHY 364
+ LF + N PD ITFIG++CAC L+ +G YF+ M D Y I P HY
Sbjct: 259 LNLFFQMKN-----AGQKPDGITFIGILCACTHMGLVEDGFAYFQSMADDYLIMPQIEHY 313
Query: 365 WCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSF 424
CM ++ A A E+A +RKMP + D ++W LL CR V + E +
Sbjct: 314 GCMVDMLARAGRLEQAMAFVRKMPVEAD-----GVIWAGLLGACRIYKNVELAELALQRL 368
Query: 425 VDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLKEVV 478
++++P++ + Y L N+Y AG+WEDVAR++ M+ ++PGC L+++ + V
Sbjct: 369 IELEPKNPANYVMLSNIYGDAGRWEDVARLKVAMRDTGFKKLPGCSLIEVNDAV 422
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 59/261 (22%), Positives = 111/261 (42%), Gaps = 44/261 (16%)
Query: 169 MSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTA 228
M+ A +LFD +P+ N+ WN M GY++S + +RE+ F N S++
Sbjct: 1 MTYARQLFDQIPDPNIALWNSMFRGYAQS-------ESYREIFCEMFERNVVAWTSMING 53
Query: 229 CGRSARFNEGRSVHGYTVRTSLKP--NIILDTALIDLYSKCQKVEVAQRVFDSMADRNLV 286
SA R + L P +++L ++ Y + + A+++F M +R+++
Sbjct: 54 YILSADLVSARRLF------DLAPERDVVLWNIMVSGYIEGGDMVEARKLFHEMPNRDVM 107
Query: 287 CWNAMILGHCIHGK-----------PEEGIKLFTALVNGTVAGG---------------- 319
WN ++ G+ +G PE I + AL+ G G
Sbjct: 108 FWNTVLKGYATNGNVEALEGLFEEMPERNIFSWNALIGGYAHNGLFFEVLGSFKRMLSES 167
Query: 320 SISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEE 379
+ P++ T + V+ AC R L G K+ + +K N + ++YA + E
Sbjct: 168 DVPPNDATLVTVLSACARLGALDLG-KWVHVYAESSGLKGNVYVGNALMDMYAKCGIIEN 226
Query: 380 AEEILRKMPEDNDNMSFESIM 400
A + R M + D +S+ +++
Sbjct: 227 AISVFRGM-DTKDLISWNTLI 246
>gi|356561772|ref|XP_003549152.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g33350-like [Glycine max]
Length = 522
Score = 246 bits (627), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 145/486 (29%), Positives = 254/486 (52%), Gaps = 18/486 (3%)
Query: 1 MKQLLQIQAHLITSGLFFNNSFWTINLLKH-SADFGSPDYTVLVFKCINNPGTFCVNAVI 59
+ L Q+QA+L T G + F+ L++ + + Y L+F I + T A+I
Sbjct: 19 LNHLKQLQAYLTTLG-HAHTHFYAFKLIRFCTLTLSNLTYARLIFDHIPSLNTHLFTAMI 77
Query: 60 KAYSN--SCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNG 117
AY+ + P +F + PN + F +C ++ E H +K+G
Sbjct: 78 TAYAAHPATHPSALSLFRHMLRSQPPRPNHFIFPHALKTCPESCAAES---LHAQIVKSG 134
Query: 118 VDFELPVMNS-LINMYG-CFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHEL 175
E PV+ + L++ Y G + A+ +F +MS R ++S+ ++VSG R GD+ +A +
Sbjct: 135 FH-EYPVVQTALVDSYSKVSGGLGNAKKVFDEMSDRSVVSFTAMVSGFARVGDVESAVRV 193
Query: 176 FDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARF 235
F M +R+V SWN +I+G +++G ++LFR M+ R N T+ L+ACG
Sbjct: 194 FGEMLDRDVPSWNALIAGCTQNGAFTQGIELFRRMVFECNRPNGVTVVCALSACGHMGML 253
Query: 236 NEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGH 295
GR +HGY + L + + AL+D+Y KC + A++VF+ ++ L WN+MI
Sbjct: 254 QLGRWIHGYVYKNGLAFDSFVLNALVDMYGKCGSLGKARKVFEMNPEKGLTSWNSMINCF 313
Query: 296 CIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFY 355
+HG+ + I +F +V G GG + PDE+TF+G++ AC L+ +G YF M+ Y
Sbjct: 314 ALHGQSDSAIAIFEQMVEG---GGGVRPDEVTFVGLLNACTHGGLVEKGYWYFEMMVQEY 370
Query: 356 KIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVA 415
I+P HY C+ +L A +EA ++++ M +M + ++W SLL+ C+ G
Sbjct: 371 GIEPQIEHYGCLIDLLGRAGRFDEAMDVVKGM-----SMEPDEVVWGSLLNGCKVHGRTD 425
Query: 416 MVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLK 475
+ E AK +++DP + L NVY G+W++V V +K+++ ++PGC +++
Sbjct: 426 LAEFAAKKLIEIDPHNGGYRIMLANVYGELGKWDEVRNVWRTLKQQKSYKVPGCSWIEVD 485
Query: 476 EVVEKL 481
+ V +
Sbjct: 486 DQVHQF 491
>gi|356540339|ref|XP_003538647.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g22690-like [Glycine max]
Length = 836
Score = 246 bits (627), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 143/471 (30%), Positives = 239/471 (50%), Gaps = 22/471 (4%)
Query: 43 VFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGC 102
+F N N ++ Y + +V +M++ G P+ T +S +CA+ G
Sbjct: 288 IFDECANKNLVMYNTIMSNYVHHEWASDVLVILDEMLQKGPRPDKVTMLSTIAACAQLGD 347
Query: 103 VERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSG 162
+ G H L+NG++ + N++I+MY G + A +F M + +++WNS+++G
Sbjct: 348 LSVGKSSHAYVLRNGLEGWDNISNAIIDMYMKCGKREAACKVFEHMPNKTVVTWNSLIAG 407
Query: 163 HVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTM 222
VR GDM A +FD M ER++VSWN MI + +++LFREM G G+ TM
Sbjct: 408 LVRDGDMELAWRIFDEMLERDLVSWNTMIGALVQVSMFEEAIELFREMQNQGIPGDRVTM 467
Query: 223 ASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMAD 282
+ +ACG + + V Y + + ++ L TAL+D++S+C A VF M
Sbjct: 468 VGIASACGYLGALDLAKWVCTYIEKNDIHVDLQLGTALVDMFSRCGDPSSAMHVFKRMEK 527
Query: 283 RNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLT 342
R++ W A I + G E I+LF ++ V PD++ F+ ++ AC +
Sbjct: 528 RDVSAWTAAIGVMAMEGNTEGAIELFNEMLEQKV-----KPDDVVFVALLTACSHGGSVD 582
Query: 343 EGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMP-EDNDNMSFESIMW 401
+GR+ F M + I+P+ HY CM +L A L EEA ++++ MP E ND ++W
Sbjct: 583 QGRQLFWSMEKAHGIRPHIVHYGCMVDLLGRAGLLEEAVDLIQSMPIEPND------VVW 636
Query: 402 VSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKR 461
SLL+ CR V + A+ + P+ + L N+YA AG+W DVARVR MK++
Sbjct: 637 GSLLAACRKHKNVELAHYAAEKLTQLAPERVGIHVLLSNIYASAGKWTDVARVRLQMKEK 696
Query: 462 RMGRMPGCRLVDLKEVVEKLKVG------HFWRGGMKEEVNKMMECRQSRS 506
+ ++PG ++++ ++ + G + G M EE+N CR S +
Sbjct: 697 GVQKVPGSSSIEVQGLIHEFTSGDESHAENTHIGLMLEEIN----CRLSEA 743
Score = 148 bits (374), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 119/482 (24%), Positives = 213/482 (44%), Gaps = 63/482 (13%)
Query: 1 MKQLLQIQAHLITSGLFFNNSFWTIN-LLKHSADFG---SPDYTVLVF--KCINNPGTFC 54
+K+L Q+ ++ GL + +N L+ S G S DY F N F
Sbjct: 38 LKELKQLHCDMMKKGLLCHKPASNLNKLIASSVQIGTLESLDYARNAFGDDDGNMASLFM 97
Query: 55 VNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLAL 114
N +I+ Y+++ + DQ ++ Y+QM+ G +P+ YTF L +C+K + G HG L
Sbjct: 98 YNCLIRGYASAGLGDQAILLYVQMLVMGIVPDKYTFPFLLSACSKILALSEGVQVHGAVL 157
Query: 115 KNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHE 174
K G++ ++ V NSLI+ Y G +D R +
Sbjct: 158 KMGLEGDIFVSNSLIHFYAECGKVDLGR-------------------------------K 186
Query: 175 LFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSAR 234
LFD M ERNVVSW +I+GYS ++ LF +M ++G N TM V++AC +
Sbjct: 187 LFDGMLERNVVSWTSLINGYSGRDLSKEAVSLFFQMGEAGVEPNPVTMVCVISACAKLKD 246
Query: 235 FNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILG 294
G+ V Y ++ + I+ AL+D+Y KC + A+++FD A++NLV +N ++
Sbjct: 247 LELGKKVCSYISELGMELSTIMVNALVDMYMKCGDICAARQIFDECANKNLVMYNTIMSN 306
Query: 295 HCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRK----YFRQ 350
+ H + + + ++ PD++T + I AC + L+ G+ R
Sbjct: 307 YVHHEWASDVLVILDEMLQ-----KGPRPDKVTMLSTIAACAQLGDLSVGKSSHAYVLRN 361
Query: 351 MIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRF 410
++ + N + ++Y E A ++ MP + W SL++
Sbjct: 362 GLEGWDNISN-----AIIDMYMKCGKREAACKVFEHMPNKT------VVTWNSLIAGLVR 410
Query: 411 QGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCR 470
G + + R+ F +M +D + ++ +E+ EL ++ + +PG R
Sbjct: 411 DGDMELAWRI---FDEMLERDLVSWNTMIGALVQVSMFEEAI---ELFREMQNQGIPGDR 464
Query: 471 LV 472
+
Sbjct: 465 VT 466
Score = 42.7 bits (99), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 45/224 (20%), Positives = 91/224 (40%), Gaps = 13/224 (5%)
Query: 35 GSPDYTVLVFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLF 94
G P + VFK + A I + + + + +M++ P+ FV+L
Sbjct: 513 GDPSSAMHVFKRMEKRDVSAWTAAIGVMAMEGNTEGAIELFNEMLEQKVKPDDVVFVALL 572
Query: 95 GSCAKTGCVERG-GMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQM--SPR 151
+C+ G V++G + + +G+ + ++++ G G ++ A ++ M P
Sbjct: 573 TACSHGGSVDQGRQLFWSMEKAHGIRPHIVHYGCMVDLLGRAGLLEEAVDLIQSMPIEPN 632
Query: 152 DLISWNSIVSGHVRSGDMSAAH----ELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLF 207
D++ W S+++ + ++ AH +L + PER V ++++S S +
Sbjct: 633 DVV-WGSLLAACRKHKNVELAHYAAEKLTQLAPER--VGIHVLLSNIYASAGKWTDVARV 689
Query: 208 REMMKSGFRGNDKTM-ASVLTACGRSARFNEGRSVHGYTVRTSL 250
R MK +G K +S + G F G H L
Sbjct: 690 RLQMKE--KGVQKVPGSSSIEVQGLIHEFTSGDESHAENTHIGL 731
>gi|90265157|emb|CAH67783.1| H0201G08.10 [Oryza sativa Indica Group]
Length = 530
Score = 246 bits (627), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 143/486 (29%), Positives = 237/486 (48%), Gaps = 18/486 (3%)
Query: 7 IQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSNSC 66
I L+ +GL + LL A GSPD+ +F + G A+ +A+ S
Sbjct: 31 IHCLLLKAGLLHVGAHLPTALLSAYAALGSPDHARRLFDEMPEQGLVPRTAMARAHVASG 90
Query: 67 VPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGC----VERGGMCHGLALKNGVDFEL 122
Q + + M+ +G P++ G+C G G M H L + +G+ ++
Sbjct: 91 QAAQAIAVFGDMVADGVFPDNVAVAVALGACHGAGSWTARRNPGKMIHALVVTSGIVPDV 150
Query: 123 PVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPER 182
V LI +YG G + +R +F M R I+WN+++ + R G + A+E+F MP R
Sbjct: 151 FVSTELIRVYGESGELPVSRRVFDDMPSRSTITWNAMLHQYARHGKVDTAYEMFLAMPRR 210
Query: 183 NVVSWNIMISGYSKSGNPGCSLKLFREMMKS---GFRGNDKTMASVLTACGRSARFNEGR 239
+VVSWN +++GY +G +L LFR+M+ N TM+++L AC + G
Sbjct: 211 DVVSWNTVLAGYCVAGRCREALGLFRQMVSPSSCAVHPNVPTMSTILGACAGAGCLETGI 270
Query: 240 SVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMA-DRNLVCWNAMILGHCIH 298
VH Y R + + LD LID+Y KC ++ A +VF+ ++L W +I G +H
Sbjct: 271 WVHAYIERNRMNDDGYLDRCLIDMYCKCGSIDNALQVFEKAPRKKDLFSWTTVICGLAMH 330
Query: 299 GKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIK 358
G+ + +++F + + I PD++T +GV+ AC L+ EG YF M ++I
Sbjct: 331 GRTTDALRMFDMMQD-----NGICPDDVTLVGVLNACAHGGLVDEGLGYFYSMEAKFRIT 385
Query: 359 PNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVE 418
P HY CM +L +EA ++R MP D + +++W + LS C+ G + + +
Sbjct: 386 PKIEHYGCMIDLLGRVGRLQEAYSMIRTMPMDPN-----TVIWGAFLSACKVHGNMELGK 440
Query: 419 RLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLKEVV 478
A+ +DP D L ++YA A W +AR R M ++ + PGC ++LK V
Sbjct: 441 IAAEELTRLDPDDPWGRVMLSSMYAKAQDWIGLARERREMNSMQVKKTPGCSSIELKGEV 500
Query: 479 EKLKVG 484
+ G
Sbjct: 501 HEFVAG 506
>gi|326518042|dbj|BAK07273.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 527
Score = 246 bits (627), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 144/470 (30%), Positives = 240/470 (51%), Gaps = 13/470 (2%)
Query: 8 QAHLITSGLFFN-NSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSNSC 66
+AH T F +++ +L+ G + VF + N +++ Y
Sbjct: 67 KAHAATLKTGFRWDAYTASSLMDMYTMLGRLEAARKVFDEMPQRAVVVWNMMLRCYVRCG 126
Query: 67 VPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVD-FELPVM 125
+ V +M + P+ T ++ +C++ G + G H A +GV F LPV
Sbjct: 127 RNTEAVALAEEMERGRLTPDRVTLLTALTACSRAGDLSLGRKIH--AYMDGVTGFSLPVA 184
Query: 126 NSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVV 185
N+L++MY G ++ A N+F +M R+++SW ++VSG+ +G + A LF E++++
Sbjct: 185 NALLDMYVKNGCLEEAVNLFEKMPSRNVVSWTTLVSGYAFAGQVDKARLLFHQCTEKDLI 244
Query: 186 SWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYT 245
W MI+ Y + G +L LFR+M + T+ ++LT C ++G+ +H +
Sbjct: 245 MWTAMINAYVQHGCFIEALSLFRDMQMHQIEPDRFTVVTLLTCCANLGALDQGQLIHQFA 304
Query: 246 VRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGI 305
++K + +L TALID+Y+KC VE + VF+ M R+ W A+I G +G+ +
Sbjct: 305 EGRNMKLDAVLGTALIDMYAKCGHVEKSVEVFERMEGRDTKAWTAIICGLATNGQAGRAL 364
Query: 306 KLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYW 365
+LF + PD +TFIGV+ AC L+ EGRK FR M + Y+I+P HY
Sbjct: 365 ELFEDMERSEA-----KPDSVTFIGVLSACCHGGLVDEGRKQFRAMKEVYRIRPRVEHYS 419
Query: 366 CMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFV 425
C+ NL A +EAE++++ +P + D M ++ +L++ C+ QG V M ERL K
Sbjct: 420 CLVNLLGRAGQLDEAEKLIKSIPINKDAMP----LFGALITACKAQGNVKMSERLTKRIG 475
Query: 426 DMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLK 475
Q + NVYA A +WEDV RVR M + + GC L+++K
Sbjct: 476 KQGYQIPDVNLLMSNVYATASRWEDVVRVRSKMAHPSVKKNAGCSLIEVK 525
Score = 89.0 bits (219), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 68/268 (25%), Positives = 117/268 (43%), Gaps = 19/268 (7%)
Query: 179 MPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEG 238
MP R N++I ++ + + ++ ++ + G + T VL A G EG
Sbjct: 9 MPLREC---NLLIRTLARRSSHADVMAVYYDLRERGLVADSFTYPFVLRAIGALQISVEG 65
Query: 239 RSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIH 298
R H T++T + + ++L+D+Y+ ++E A++VFD M R +V WN M+ +
Sbjct: 66 RKAHAATLKTGFRWDAYTASSLMDMYTMLGRLEAARKVFDEMPQRAVVVWNMMLRCYVRC 125
Query: 299 GKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIK 358
G+ E + L + G ++PD +T + + AC RA L+ GRK M
Sbjct: 126 GRNTEAVALAEEMER-----GRLTPDRVTLLTALTACSRAGDLSLGRKIHAYMDGVTGFS 180
Query: 359 PNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVE 418
A+ + ++Y EEA + KMP N + W +L+S F G V
Sbjct: 181 LPVAN--ALLDMYVKNGCLEEAVNLFEKMPSRN------VVSWTTLVSGYAFAGQVDKAR 232
Query: 419 RLAKSFVDMDPQDFSRYQFLLNVYAVAG 446
L F +D + ++N Y G
Sbjct: 233 LL---FHQCTEKDLIMWTAMINAYVQHG 257
>gi|357132191|ref|XP_003567715.1| PREDICTED: pentatricopeptide repeat-containing protein At5g19020,
mitochondrial-like [Brachypodium distachyon]
Length = 656
Score = 245 bits (626), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 150/478 (31%), Positives = 240/478 (50%), Gaps = 46/478 (9%)
Query: 26 NLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSNSC-----------VPDQGVVF 74
NL+ A + VF+ + + T NA++ Y + +P++ VV
Sbjct: 184 NLVHAYAAAAQVGFARAVFEWMPDKNTVTWNAMLNGYVKAGAIDMAAEMFERIPERDVVS 243
Query: 75 YLQMIKNGFM----------------------PNSYTFVSLFGSCAKTGCVERGGMCHGL 112
+L MI +G++ N V +CA+ V G H +
Sbjct: 244 WLVMI-DGYIRADCISEALRTYVAMMAEVDTRGNVALLVDFQKACARHAAVLEGQQLHTV 302
Query: 113 ALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAA 172
LK+G D L V +LI+ YG +D A+ F + SWN+ ++G VR M A
Sbjct: 303 ILKDGFDTHLFVQATLIHFYGSCDLLDLAKMQFKLSDKSHIASWNAFMAGIVRKNLMHEA 362
Query: 173 HELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRS 232
+LFD MPE++ +SW+ ++SGY +SG+ +L+LF M+ +G + N T+AS L+A S
Sbjct: 363 RQLFDNMPEKDTISWSTLLSGYVQSGHSDMALQLFCLMLGAGVKPNHITLASTLSAVANS 422
Query: 233 ARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADR--NLVCWNA 290
+GR +H Y + S+ L LID+Y+KC V A +F+ + ++ +L WNA
Sbjct: 423 GTLEQGRWIHDYIISKSIHLTDNLIAGLIDMYAKCGSVADAVLLFNHVKEKLSSLSPWNA 482
Query: 291 MILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQ 350
MI IHG ++LF+ L + +I P+ IT+IGV+ AC A ++TEG+ +F
Sbjct: 483 MICSLAIHGHAHMSLELFSQLQS-----SNIKPNSITYIGVLNACCHAGMVTEGKHHFES 537
Query: 351 MIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRF 410
M Y I P HY CM +L A EEAE +++ MP +D ++W S+L+ R
Sbjct: 538 MRREYGIPPTIKHYGCMVDLLGRAGYLEEAERLIKTMPVKSD-----VVIWGSILAAARS 592
Query: 411 QGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPG 468
G VA+ E+ A+ +DP + L N+YA AG+W +V+ VR+ ++ + R+ G
Sbjct: 593 HGNVALGEKAAEELAKLDPNHGASKVALCNIYADAGRWNNVSVVRKELRYENLERLSG 650
Score = 131 bits (329), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 79/352 (22%), Positives = 158/352 (44%), Gaps = 37/352 (10%)
Query: 26 NLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMP 85
LL A G D+ + + T V+ A + + + + + M+ P
Sbjct: 83 TLLAALARGGHLDHAKRMLAEMPQRDTVSFTTVLTALARAGHAEDAMAVFRGMLAQDVPP 142
Query: 86 NSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMF 145
N T + + A+ GM HG++++ G+D + V +L++ Y + AR +F
Sbjct: 143 NEVTLAGVITALARDWAPAPLGMVHGVSVQRGLDGFVIVATNLVHAYAAAAQVGFARAVF 202
Query: 146 VQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLK 205
M ++ ++WN++++G+V++G + A E+F+ +PER+VVSW +MI GY ++ +L+
Sbjct: 203 EWMPDKNTVTWNAMLNGYVKAGAIDMAAEMFERIPERDVVSWLVMIDGYIRADCISEALR 262
Query: 206 LFREMMKS-GFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLY 264
+ MM RGN + AC R A EG+ +H ++ ++ + LI Y
Sbjct: 263 TYVAMMAEVDTRGNVALLVDFQKACARHAAVLEGQQLHTVILKDGFDTHLFVQATLIHFY 322
Query: 265 SKCQKVEVAQ-------------------------------RVFDSMADRNLVCWNAMIL 293
C +++A+ ++FD+M +++ + W+ ++
Sbjct: 323 GSCDLLDLAKMQFKLSDKSHIASWNAFMAGIVRKNLMHEARQLFDNMPEKDTISWSTLLS 382
Query: 294 GHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGR 345
G+ G + ++LF ++ G + P+ IT + A + L +GR
Sbjct: 383 GYVQSGHSDMALQLFCLML-----GAGVKPNHITLASTLSAVANSGTLEQGR 429
Score = 101 bits (252), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 74/290 (25%), Positives = 141/290 (48%), Gaps = 18/290 (6%)
Query: 79 IKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFE-LPVMNSLINMYGCF-- 135
+ +G P + V+ S A+ + G H LA K+G+ L V NSL+ Y
Sbjct: 1 MPSGGAPLAVFLVASLKSGAR---LRHGEQLHALAAKSGLLVSNLFVRNSLLAFYSRLPS 57
Query: 136 -GAMDCARNMF--VQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMIS 192
A A ++F + ++ RD + N++++ R G + A + MP+R+ VS+ +++
Sbjct: 58 SHAPALAHHLFDEIPLALRDAAAHNTLLAALARGGHLDHAKRMLAEMPQRDTVSFTTVLT 117
Query: 193 GYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKP 252
+++G+ ++ +FR M+ N+ T+A V+TA R VHG +V+ L
Sbjct: 118 ALARAGHAEDAMAVFRGMLAQDVPPNEVTLAGVITALARDWAPAPLGMVHGVSVQRGLDG 177
Query: 253 NIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALV 312
+I+ T L+ Y+ +V A+ VF+ M D+N V WNAM+ G+ G + ++F +
Sbjct: 178 FVIVATNLVHAYAAAAQVGFARAVFEWMPDKNTVTWNAMLNGYVKAGAIDMAAEMFERIP 237
Query: 313 NGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFA 362
D ++++ +I +RA+ ++E + + M+ + N A
Sbjct: 238 E---------RDVVSWLVMIDGYIRADCISEALRTYVAMMAEVDTRGNVA 278
>gi|125546973|gb|EAY92795.1| hypothetical protein OsI_14599 [Oryza sativa Indica Group]
Length = 530
Score = 245 bits (626), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 143/486 (29%), Positives = 237/486 (48%), Gaps = 18/486 (3%)
Query: 7 IQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSNSC 66
I L+ +GL + LL A GSPD+ +F + G A+ +A+ S
Sbjct: 31 IHCLLLKAGLLHVGAHLPTALLSAYAALGSPDHARRLFDEMPEQGLVPRTAMARAHVASG 90
Query: 67 VPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGC----VERGGMCHGLALKNGVDFEL 122
Q + + M+ +G P++ G+C G G M H L + +G+ ++
Sbjct: 91 QAAQAIAVFGDMVADGVFPDNVAVAVALGACHGAGSWTARRNPGKMIHALVVTSGIVPDV 150
Query: 123 PVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPER 182
V LI +YG G + +R +F M R I+WN+++ + R G + A+E+F MP R
Sbjct: 151 FVSTELIRVYGESGELPVSRRVFDDMPSRSTITWNAMLHQYARHGKVDTAYEMFLAMPRR 210
Query: 183 NVVSWNIMISGYSKSGNPGCSLKLFREMMKS---GFRGNDKTMASVLTACGRSARFNEGR 239
+VVSWN +++GY +G +L LFR+M+ N TM+++L AC + G
Sbjct: 211 DVVSWNTVLAGYCVAGRCREALGLFRQMVSPSSCAVHPNVPTMSTILGACAGAGCLETGI 270
Query: 240 SVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMA-DRNLVCWNAMILGHCIH 298
VH Y R + + LD LID+Y KC ++ A +VF+ ++L W +I G +H
Sbjct: 271 WVHAYIERNRMNDDGYLDRCLIDMYCKCGSIDNALQVFEKAPRKKDLFSWTTVICGLAMH 330
Query: 299 GKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIK 358
G+ + +++F + + I PD++T +GV+ AC L+ EG YF M ++I
Sbjct: 331 GRTTDALRMFDMMQD-----NGICPDDVTLVGVLNACAHGGLVDEGLGYFYSMEAKFRIT 385
Query: 359 PNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVE 418
P HY CM +L +EA ++R MP D + +++W + LS C+ G + + +
Sbjct: 386 PKIEHYGCMIDLLGRIGRLQEAYSMIRTMPMDPN-----TVIWGAFLSACKVHGNMELGK 440
Query: 419 RLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLKEVV 478
A+ +DP D L ++YA A W +AR R M ++ + PGC ++LK V
Sbjct: 441 IAAEELTRLDPDDPWGRVMLSSMYAKAQDWIGLARERREMNSMQVKKTPGCSSIELKGEV 500
Query: 479 EKLKVG 484
+ G
Sbjct: 501 HEFVAG 506
>gi|449461217|ref|XP_004148338.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g34400-like [Cucumis sativus]
Length = 619
Score = 245 bits (626), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 132/442 (29%), Positives = 232/442 (52%), Gaps = 39/442 (8%)
Query: 43 VFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGC 102
VF I+ N++I YS + V + +M++ GF PN + VS+ G+C + G
Sbjct: 184 VFDEISQKDLVSWNSMISGYSKMRHAGEAVGLFREMMEAGFQPNEMSLVSVLGACGELGD 243
Query: 103 VERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSG 162
++ G ++N + + ++LI+MYG
Sbjct: 244 LKLGTWVEEFVVENKMTLNYFMGSALIHMYG----------------------------- 274
Query: 163 HVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTM 222
+ GD+ +A +FD M +++ V+WN MI+GY+++G ++KLF++M S + T+
Sbjct: 275 --KCGDLVSARRIFDSMKKKDKVTWNAMITGYAQNGMSEEAIKLFQDMRMSSTAPDQITL 332
Query: 223 ASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMAD 282
+L+AC + G+ V Y + ++ + TAL+D+Y+KC ++ A RVF M +
Sbjct: 333 IGILSACASIGALDLGKQVEIYASERGFQDDVYVGTALVDMYAKCGSLDNAFRVFYGMPN 392
Query: 283 RNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLT 342
+N V WNAMI HG+ +E + LF +++N GG++SP++ITF+GV+ ACV A L+
Sbjct: 393 KNEVSWNAMISALAFHGQAQEALALFKSMMN---EGGTVSPNDITFVGVLSACVHAGLVD 449
Query: 343 EGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWV 402
EGR+ F M + + P HY CM +L++ A EEA + + MPE D ++
Sbjct: 450 EGRRLFHMMSSSFGLVPKIEHYSCMVDLFSRAGHLEEAWDFVMTMPEKPD-----EVILG 504
Query: 403 SLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRR 462
+LL C+ + + + ER+ K ++++P + Y +YA +W+D AR+R LMK++
Sbjct: 505 ALLGACQKRKNIDISERVMKLLLELEPSNSGNYVISSKLYANLRRWDDSARMRMLMKQKG 564
Query: 463 MGRMPGCRLVDLKEVVEKLKVG 484
+ + PGC +D+ + + G
Sbjct: 565 VSKTPGCSWIDINSQLHEFHAG 586
Score = 193 bits (491), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 135/442 (30%), Positives = 208/442 (47%), Gaps = 61/442 (13%)
Query: 1 MKQLLQIQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIK 60
+KQL QI A L+T+ + NSF L AD Y + F I +P + N +I+
Sbjct: 45 IKQLKQIHAQLLTNSIHKPNSF-----LYKIADLKDFAYASVFFSNILDPTEYSFNVMIR 99
Query: 61 AYSNSCVPDQ-GVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVD 119
S + + FY +M G PN+ T+ LF +C+ VE G M H ++ G+D
Sbjct: 100 GLSTAWNKSSLALEFYSRMKFLGLKPNNLTYPFLFIACSNLLAVENGRMGHCSVIRRGLD 159
Query: 120 FELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIM 179
+ V +SLI MY R G M A ++FD +
Sbjct: 160 EDGHVSHSLITMYA-------------------------------RCGKMGDARKVFDEI 188
Query: 180 PERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGR 239
++++VSWN MISGYSK + G ++ LFREMM++GF+ N+ ++ SVL ACG G
Sbjct: 189 SQKDLVSWNSMISGYSKMRHAGEAVGLFREMMEAGFQPNEMSLVSVLGACGELGDLKLGT 248
Query: 240 SVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHG 299
V + V + N + +ALI +Y KC + A+R+FDSM ++ V WNAMI G+ +G
Sbjct: 249 WVEEFVVENKMTLNYFMGSALIHMYGKCGDLVSARRIFDSMKKKDKVTWNAMITGYAQNG 308
Query: 300 KPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKP 359
EE IKLF + + A PD+IT IG++ AC L G++ ++ Y +
Sbjct: 309 MSEEAIKLFQDMRMSSTA-----PDQITLIGILSACASIGALDLGKQ-----VEIYASER 358
Query: 360 NFAHY----WCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVA 415
F + ++YA + A + MP N+ + W +++S F G
Sbjct: 359 GFQDDVYVGTALVDMYAKCGSLDNAFRVFYGMPNKNE------VSWNAMISALAFHGQAQ 412
Query: 416 MVERLAKSFVD----MDPQDFS 433
L KS ++ + P D +
Sbjct: 413 EALALFKSMMNEGGTVSPNDIT 434
>gi|225460265|ref|XP_002278647.1| PREDICTED: pentatricopeptide repeat-containing protein At4g14050,
mitochondrial-like [Vitis vinifera]
Length = 610
Score = 245 bits (626), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 137/446 (30%), Positives = 234/446 (52%), Gaps = 13/446 (2%)
Query: 57 AVIKAYSNSCVPDQGVVFYLQMIK-NGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALK 115
+++ A + + +P + + M K +G P+ Y F L +CA G +++G H +
Sbjct: 74 SILTANNQANLPHLTLSMFPAMFKQDGLQPDHYVFACLVKACAILGAMKQGKQVHATFIV 133
Query: 116 NGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHEL 175
+ V + V +SL++MY G D R +F +S ++ ISW +++SG+ +SG A +L
Sbjct: 134 SPVSDDDVVKSSLVDMYAKCGLPDIGRVVFDSISSKNSISWTAMISGYAQSGRKLDAIQL 193
Query: 176 FDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDK-TMASVLTACGRSAR 234
F MP +N++SW +ISG +SGN S LF EM G D ++S++ A A
Sbjct: 194 FQKMPVKNLLSWTALISGLVQSGNWVDSFYLFMEMRSKGIDIVDPFILSSIIGASANLAV 253
Query: 235 FNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILG 294
G+ +H + + ++ + AL+D+Y+KC V A+++F M R++V W ++I+G
Sbjct: 254 LGLGKQIHCLVILLGYESSLFVSNALVDMYAKCSDVLAAKKIFGRMVQRDIVSWTSIIVG 313
Query: 295 HCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDF 354
HG EE + L+ +++ + P+E+TF+G+I AC L+++GR +F MI
Sbjct: 314 TAQHGLAEEALSLYNRMLS-----TGLKPNEVTFVGLIYACSHVGLVSKGRYFFNSMIKD 368
Query: 355 YKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAV 414
Y I P+ HY C+ +L + + EEAE +++ MP D + W +LLS C
Sbjct: 369 YGINPSLQHYTCLLDLLSRSGHLEEAENLIKAMPFKPDEAT-----WAALLSACNHHRNT 423
Query: 415 AMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDL 474
+ R+A + + P+D S Y L N+YA A WE V++VR LM + + PG + L
Sbjct: 424 LIGIRVADHLLSLKPEDPSTYILLSNIYASAAMWESVSKVRRLMAAMEVKKEPGYSCIVL 483
Query: 475 KEVVEKLKVGHFWRGGMKEEVNKMME 500
+ + G KEE+ ++E
Sbjct: 484 GKESQVFLAGETSHPA-KEEIFGLLE 508
Score = 98.2 bits (243), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 63/237 (26%), Positives = 111/237 (46%), Gaps = 43/237 (18%)
Query: 96 SCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLIS 155
+CA+ G H +K G+D + N+LINMYG G + A N+F Q+ RD IS
Sbjct: 12 ACARHQSPPIGKKLHCHIIKTGIDQCKSLSNNLINMYGKCGLIQDALNLFNQLPHRDPIS 71
Query: 156 WNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKS-G 214
W SI++ + +++ P +L +F M K G
Sbjct: 72 WASILTAN-------------------------------NQANLPHLTLSMFPAMFKQDG 100
Query: 215 FRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQ 274
+ + A ++ AC +G+ VH + + + + ++ ++L+D+Y+KC ++ +
Sbjct: 101 LQPDHYVFACLVKACAILGAMKQGKQVHATFIVSPVSDDDVVKSSLVDMYAKCGLPDIGR 160
Query: 275 RVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLF-----------TALVNGTVAGGS 320
VFDS++ +N + W AMI G+ G+ + I+LF TAL++G V G+
Sbjct: 161 VVFDSISSKNSISWTAMISGYAQSGRKLDAIQLFQKMPVKNLLSWTALISGLVQSGN 217
Score = 49.7 bits (117), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 43/225 (19%), Positives = 90/225 (40%), Gaps = 14/225 (6%)
Query: 226 LTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNL 285
L AC R G+ +H + ++T + L LI++Y KC ++ A +F+ + R+
Sbjct: 10 LQACARHQSPPIGKKLHCHIIKTGIDQCKSLSNNLINMYGKCGLIQDALNLFNQLPHRDP 69
Query: 286 VCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGR 345
+ W +++ + P + +F A+ + PD F ++ AC + +G+
Sbjct: 70 ISWASILTANNQANLPHLTLSMFPAMFKQD----GLQPDHYVFACLVKACAILGAMKQGK 125
Query: 346 KYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLL 405
+ I + + + ++YA L + + + N SI W +++
Sbjct: 126 QVHATFI-VSPVSDDDVVKSSLVDMYAKCGLPDIGRVVFDSISSKN------SISWTAMI 178
Query: 406 SLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWED 450
S G +L F M ++ + L++ +G W D
Sbjct: 179 SGYAQSGRKLDAIQL---FQKMPVKNLLSWTALISGLVQSGNWVD 220
>gi|242096286|ref|XP_002438633.1| hypothetical protein SORBIDRAFT_10g023240 [Sorghum bicolor]
gi|241916856|gb|EER90000.1| hypothetical protein SORBIDRAFT_10g023240 [Sorghum bicolor]
Length = 529
Score = 245 bits (626), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 150/475 (31%), Positives = 247/475 (52%), Gaps = 18/475 (3%)
Query: 6 QIQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCV--NAVIKAYS 63
++ A + +G F +++ +LL+ G D+ VF P F V N +++ Y
Sbjct: 67 KVHAAAVKTG-FRWDAYTASSLLEMYTMLGRVDFARKVFD--EMPQRFLVLWNMMMRCYI 123
Query: 64 NSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGV-DFEL 122
V +M ++G P+ T V+ +C++ G + G A +GV F L
Sbjct: 124 RCGRFTAAVALAEEMERSGATPDRVTLVTAVTACSRAGDLSLGRRIR--AYMDGVFGFSL 181
Query: 123 PVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPER 182
PV N+L++MY G ++ A MF QM R++ISW +VSG+ +G + A LF ++
Sbjct: 182 PVANALLDMYTKNGYLEEAVKMFQQMPERNIISWTILVSGYAVAGQLDKARMLFYQCTQK 241
Query: 183 NVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVH 242
+++ W MI+ + G+ +L LFR+M + T+ ++LT C ++G +H
Sbjct: 242 DLILWTAMINACVQHGSFEEALTLFRDMQLQRVEPDKFTVVTLLTCCANIGALDQGEWIH 301
Query: 243 GYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPE 302
Y ++K + +L TALI++YSKC V+ + ++F M R+ W A+I G +G+
Sbjct: 302 QYAEGRNMKIDAVLGTALIEMYSKCGHVDKSLQIFGRMQGRDAAAWTAIICGLATNGQAS 361
Query: 303 EGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFA 362
+ ++LF + PD ITFIGV+ AC L+ EGR++F+ M + Y+I+P
Sbjct: 362 KALELFEEMQR-----SKTKPDGITFIGVLNACCHGGLVDEGRRHFQAMKEIYQIEPRIE 416
Query: 363 HYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAK 422
HY C+ NL A L EAE+++R MP +ND M ++ +LL+ C+ G V M ERL K
Sbjct: 417 HYSCLVNLLGHAGLLYEAEKLIRDMPVNNDTMP----LFGALLTACKAYGNVEMSERLTK 472
Query: 423 SFVDMD-PQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLKE 476
D Q+ + NVYA A +WE+ RVR M + + GC ++++KE
Sbjct: 473 RIAKEDCSQNPDVNVLMSNVYATASRWEESIRVRSKMTHPAVKKTAGCSMIEVKE 527
Score = 98.2 bits (243), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 88/411 (21%), Positives = 172/411 (41%), Gaps = 55/411 (13%)
Query: 56 NAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALK 115
N +I+ + + + Y + G + +SYT+ + + G H A+K
Sbjct: 15 NVLIRTLARRGSFARVMAVYYDLRARGLVADSYTYPFVLRAIGVMKLSVEGRKVHAAAVK 74
Query: 116 NGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHEL 175
G ++ +SL+ MY G +D AR +F +M R L+ WN ++ ++R G +AA
Sbjct: 75 TGFRWDAYTASSLLEMYTMLGRVDFARKVFDEMPQRFLVLWNMMMRCYIRCGRFTAA--- 131
Query: 176 FDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARF 235
+ L EM +SG + T+ + +TAC R+
Sbjct: 132 ----------------------------VALAEEMERSGATPDRVTLVTAVTACSRAGDL 163
Query: 236 NEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGH 295
+ GR + Y + ++ + AL+D+Y+K +E A ++F M +RN++ W ++ G+
Sbjct: 164 SLGRRIRAY-MDGVFGFSLPVANALLDMYTKNGYLEEAVKMFQQMPERNIISWTILVSGY 222
Query: 296 CIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFY 355
+ G+ ++ LF D I + +I ACV+ E FR M
Sbjct: 223 AVAGQLDKARMLFYQCTQ---------KDLILWTAMINACVQHGSFEEALTLFRDM-QLQ 272
Query: 356 KIKPN----FAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQ 411
+++P+ C AN+ A ++ E I + NM ++++ +L+ +
Sbjct: 273 RVEPDKFTVVTLLTCCANIGA----LDQGEWI--HQYAEGRNMKIDAVLGTALIEM---Y 323
Query: 412 GAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRR 462
V++ + F M +D + + ++ A GQ + E M++ +
Sbjct: 324 SKCGHVDKSLQIFGRMQGRDAAAWTAIICGLATNGQASKALELFEEMQRSK 374
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 71/292 (24%), Positives = 129/292 (44%), Gaps = 19/292 (6%)
Query: 172 AHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGR 231
A + MP R+ N++I ++ G+ + ++ ++ G + T VL A G
Sbjct: 2 ATACYHAMPLRDC---NVLIRTLARRGSFARVMAVYYDLRARGLVADSYTYPFVLRAIGV 58
Query: 232 SARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAM 291
EGR VH V+T + + ++L+++Y+ +V+ A++VFD M R LV WN M
Sbjct: 59 MKLSVEGRKVHAAAVKTGFRWDAYTASSLLEMYTMLGRVDFARKVFDEMPQRFLVLWNMM 118
Query: 292 ILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQM 351
+ + G+ + AL G+ +PD +T + + AC RA L+ GR+ M
Sbjct: 119 MRCYIRCGRFTAAV----ALAEEMERSGA-TPDRVTLVTAVTACSRAGDLSLGRRIRAYM 173
Query: 352 IDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQ 411
+ A+ + ++Y EEA ++ ++MPE N I W L+S
Sbjct: 174 DGVFGFSLPVAN--ALLDMYTKNGYLEEAVKMFQQMPERN------IISWTILVSGYAVA 225
Query: 412 GAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRM 463
G + L F +D + ++N G +E+ + M+ +R+
Sbjct: 226 GQLDKARML---FYQCTQKDLILWTAMINACVQHGSFEEALTLFRDMQLQRV 274
>gi|15225365|ref|NP_182015.1| Pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|218546766|sp|Q1PEU4.2|PP201_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g44880
gi|2344896|gb|AAC31836.1| hypothetical protein [Arabidopsis thaliana]
gi|330255385|gb|AEC10479.1| Pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 555
Score = 245 bits (625), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 150/498 (30%), Positives = 240/498 (48%), Gaps = 77/498 (15%)
Query: 52 TFCVNAVIKAY-SNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCH 110
+F N++IKAY PD ++ + F P+++TF +L SC+ + CV +G H
Sbjct: 42 SFLSNSMIKAYLETRQYPDSFALYRDLRKETCFAPDNFTFTTLTKSCSLSMCVYQGLQLH 101
Query: 111 GLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGH------- 163
+ G ++ V +++MY FG M CARN F +M R +SW +++SG+
Sbjct: 102 SQIWRFGFCADMYVSTGVVDMYAKFGKMGCARNAFDEMPHRSEVSWTALISGYIRCGELD 161
Query: 164 -------------------------VRSGDMS---------------------------- 170
V+SGDM+
Sbjct: 162 LASKLFDQMPHVKDVVIYNAMMDGFVKSGDMTSARRLFDEMTHKTVITWTTMIHGYCNIK 221
Query: 171 ---AAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMM-KSGFRGNDKTMASVL 226
AA +LFD MPERN+VSWN MI GY ++ P ++LF+EM + +D T+ SVL
Sbjct: 222 DIDAARKLFDAMPERNLVSWNTMIGGYCQNKQPQEGIRLFQEMQATTSLDPDDVTILSVL 281
Query: 227 TACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLV 286
A + + G H + R L + + TA++D+YSKC ++E A+R+FD M ++ +
Sbjct: 282 PAISDTGALSLGEWCHCFVQRKKLDKKVKVCTAILDMYSKCGEIEKAKRIFDEMPEKQVA 341
Query: 287 CWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRK 346
WNAMI G+ ++G + LF ++ PDEIT + VI AC L+ EGRK
Sbjct: 342 SWNAMIHGYALNGNARAALDLFVTMMIEE------KPDEITMLAVITACNHGGLVEEGRK 395
Query: 347 YFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLS 406
+F M + + HY CM +L A +EAE+++ MP + + I+ S LS
Sbjct: 396 WFHVMREM-GLNAKIEHYGCMVDLLGRAGSLKEAEDLITNMPFEPN-----GIILSSFLS 449
Query: 407 LCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRM 466
C + ER+ K V+++PQ+ Y L N+YA +W+D V+ +M+K + +
Sbjct: 450 ACGQYKDIERAERILKKAVELEPQNDGNYVLLRNLYAADKRWDDFGMVKNVMRKNQAKKE 509
Query: 467 PGCRLVDLKEVVEKLKVG 484
GC L+++ +V + G
Sbjct: 510 VGCSLIEINYIVSEFISG 527
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 54/222 (24%), Positives = 100/222 (45%), Gaps = 15/222 (6%)
Query: 172 AHELFDIMPERN-VVSWNIMISGYSKSGNPGCSLKLFREMMKSG-FRGNDKTMASVLTAC 229
A +LFD P+R+ N MI Y ++ S L+R++ K F ++ T ++ +C
Sbjct: 29 ARKLFDQRPQRDDSFLSNSMIKAYLETRQYPDSFALYRDLRKETCFAPDNFTFTTLTKSC 88
Query: 230 GRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWN 289
S +G +H R ++ + T ++D+Y+K K+ A+ FD M R+ V W
Sbjct: 89 SLSMCVYQGLQLHSQIWRFGFCADMYVSTGVVDMYAKFGKMGCARNAFDEMPHRSEVSWT 148
Query: 290 AMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFR 349
A+I G+ G+ + KLF + + D + + ++ V++ +T R+ F
Sbjct: 149 ALISGYIRCGELDLASKLFDQMPH--------VKDVVIYNAMMDGFVKSGDMTSARRLFD 200
Query: 350 QMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDN 391
+M I + M + Y + + A ++ MPE N
Sbjct: 201 EMTHKTVIT-----WTTMIHGYCNIKDIDAARKLFDAMPERN 237
>gi|242082594|ref|XP_002441722.1| hypothetical protein SORBIDRAFT_08g001305 [Sorghum bicolor]
gi|241942415|gb|EES15560.1| hypothetical protein SORBIDRAFT_08g001305 [Sorghum bicolor]
Length = 528
Score = 245 bits (625), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 145/519 (27%), Positives = 255/519 (49%), Gaps = 23/519 (4%)
Query: 1 MKQLLQIQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIK 60
+++L +I A I GL + + + + ADFG +F I NP +++
Sbjct: 27 LRELQRIHALAIAHGLHPHQQSVSCKIFRCYADFGRVADARKLFDEIPNPDLISFTSLMS 86
Query: 61 AYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDF 120
+ + + + +++ G P+ + V + + G G HGL + G+D
Sbjct: 87 LHLQLDNQREAISLFARVVAAGHRPDGFAVVGALSASSGAGDQVVGRAVHGLIFRLGLDG 146
Query: 121 ELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMP 180
E+ V N+LI+MY G + A +F +MS +D ++W S++ G+++ + +A FD +P
Sbjct: 147 EVVVGNALIDMYSQCGKFESAVKVFDRMSLKDEVTWGSMLHGYIKCAGVDSALSFFDQVP 206
Query: 181 ERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRS 240
R+VV+W +I+G+ + P +L+LF M+ G R T+ VL+AC + GR
Sbjct: 207 VRSVVAWTALITGHVQGRQPVRALELFGRMVLEGHRPTHVTIVGVLSACADIGALDLGRV 266
Query: 241 VHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGK 300
+HGY + + NII+ AL+D+Y+K +E+A VF + ++ W MI + G
Sbjct: 267 IHGYGSKCNASLNIIVSNALMDMYAKSGHIEMAFSVFQEVQSKDSFTWTTMISCCTVQGD 326
Query: 301 PEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPN 360
++ ++LF ++ V P+ +TF+ V+ AC + L+ EG + F +M YKI P
Sbjct: 327 GKKALELFQDMLRAGVV-----PNSVTFVSVLSACSHSGLIEEGIELFDRMRQLYKIDPL 381
Query: 361 FAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERL 420
HY CM +L L EEAE ++ M N+ + ++W SLLS C +G + E
Sbjct: 382 LEHYGCMIDLLGRGGLLEEAEALIADM-----NVEPDIVIWRSLLSACLVRGNNRLAEIA 436
Query: 421 AKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLKEVVEK 480
K V +P D Y L N+YA + +W + +R+ M ++ + PGC +++ V +
Sbjct: 437 GKEIVKREPGDDGVYVLLWNMYASSNKWREAREMRQQMLSLKIFKKPGCSWIEIDGAVHE 496
Query: 481 LKVGHFWRGGMKEEVNKMMECRQS--RSLATVSKQLPWH 517
V +K + R+ +L +S+QL H
Sbjct: 497 FLVE-----------DKTHDARREIYETLEYMSRQLKTH 524
>gi|328774759|gb|AEB39779.1| pentatricopeptide repeat protein 98 [Funaria hygrometrica]
Length = 980
Score = 245 bits (625), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 143/468 (30%), Positives = 230/468 (49%), Gaps = 43/468 (9%)
Query: 1 MKQLLQIQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIK 60
+KQ QI +I +G ++ T LL A GS VF+ I+ NA+I
Sbjct: 423 LKQGRQIHDRIIKAGYITDDRVRTA-LLSMYAKCGSLMDARNVFERISKQNVVAWNAMIT 481
Query: 61 AYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDF 120
AY D V + ++K G P+S TF S+ C +E G L ++ G +
Sbjct: 482 AYVQHEKYDNAVATFQALLKEGIKPDSSTFTSILNVCKSPDALELGKWVQSLIIRAGFES 541
Query: 121 ELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMP 180
+L + N+L++M+ V GD+ +A LF+ MP
Sbjct: 542 DLHIRNALVSMF-------------------------------VNCGDLMSAMNLFNDMP 570
Query: 181 ERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRS 240
ER++VSWN +I+G+ + G + F+ M +SG + + T +L AC EGR
Sbjct: 571 ERDLVSWNTIIAGFVQHGENQFAFDYFKMMQESGVKPDQITFTGLLNACASPEALTEGRR 630
Query: 241 VHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGK 300
+H +L ++++ T LI +Y+KC ++ A VF ++ +N+ W +MI G+ HG+
Sbjct: 631 LHALITEAALDCDVVVGTGLISMYTKCGSIDDAHLVFHNLPKKNVYSWTSMITGYAQHGR 690
Query: 301 PEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPN 360
+E ++LF + + PD ITF+G + AC A L+ EG +F M DF I+P
Sbjct: 691 GKEALELFCQMQQ-----EGVKPDWITFVGALSACAHAGLIKEGLHHFESMKDF-NIEPR 744
Query: 361 FAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERL 420
HY CM +L+ A L EA E + KM D S +W +LL C+ V + E++
Sbjct: 745 MEHYGCMVDLFGRAGLLHEAVEFINKMQVKPD-----SRLWGALLGACQVHLDVELAEKV 799
Query: 421 AKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPG 468
A+ +++DP D Y L N+YA AG W++V ++R++M R + + PG
Sbjct: 800 AQKKLELDPNDDGVYVILSNIYAAAGMWKEVTKMRKVMLDRGVVKKPG 847
Score = 152 bits (383), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 110/440 (25%), Positives = 191/440 (43%), Gaps = 51/440 (11%)
Query: 6 QIQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSNS 65
+I H+ S + + W + L+ A G+ + +F + + + N ++ Y
Sbjct: 125 RIHNHIKFSKIQPDIFMWNM-LISMYAKCGNTNSAKQIFDEMPDKDVYSWNLLLGGYVQH 183
Query: 66 CVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVM 125
++ + QM+++G P+ YTFV + +CA V++GG L L G D +L V
Sbjct: 184 RRYEEAFRLHEQMVQDGVKPDKYTFVYMLNACADAKNVDKGGELFSLILNAGWDTDLFVG 243
Query: 126 NSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVV 185
+LINM+ G +D A +F + RDLI+W S+++G R A LF +M E
Sbjct: 244 TALINMHIKCGGVDDALKVFNNLPRRDLITWTSMITGLARHRQFKQACNLFQVMEEE--- 300
Query: 186 SWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYT 245
G + + S+L AC +G+ VH
Sbjct: 301 ----------------------------GVQPDKVAFVSLLKACNHPEALEQGKRVHARM 332
Query: 246 VRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGI 305
L I + TAL+ +Y+KC +E A VF+ + RN+V W AMI G HG+ EE
Sbjct: 333 KEVGLDTEIYVGTALLSMYTKCGSMEDALEVFNLVKGRNVVSWTAMIAGFAQHGRMEEAF 392
Query: 306 KLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYW 365
F ++ I P+ +TF+ ++ AC R L +GR+ ++I I +
Sbjct: 393 LFFNKMIE-----SGIEPNRVTFMSILGACSRPSALKQGRQIHDRIIKAGYITDDRVRT- 446
Query: 366 CMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLC----RFQGAVAMVERLA 421
+ ++YA +A + ++ + N + W ++++ ++ AVA + L
Sbjct: 447 ALLSMYAKCGSLMDARNVFERISKQN------VVAWNAMITAYVQHEKYDNAVATFQALL 500
Query: 422 KSFVDMDPQDFSRYQFLLNV 441
K + D F+ +LNV
Sbjct: 501 KEGIKPDSSTFTS---ILNV 517
Score = 139 bits (349), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 86/365 (23%), Positives = 164/365 (44%), Gaps = 37/365 (10%)
Query: 27 LLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPN 86
LL GS + + VF + A+I ++ ++ +F+ +MI++G PN
Sbjct: 347 LLSMYTKCGSMEDALEVFNLVKGRNVVSWTAMIAGFAQHGRMEEAFLFFNKMIESGIEPN 406
Query: 87 SYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFV 146
TF+S+ G+C++ +++G H +K G + V +L++MY G++ ARN+F
Sbjct: 407 RVTFMSILGACSRPSALKQGRQIHDRIIKAGYITDDRVRTALLSMYAKCGSLMDARNVFE 466
Query: 147 QMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKL 206
++S ++NVV+WN MI+ Y + ++
Sbjct: 467 RIS-------------------------------KQNVVAWNAMITAYVQHEKYDNAVAT 495
Query: 207 FREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSK 266
F+ ++K G + + T S+L C G+ V +R + ++ + AL+ ++
Sbjct: 496 FQALLKEGIKPDSSTFTSILNVCKSPDALELGKWVQSLIIRAGFESDLHIRNALVSMFVN 555
Query: 267 CQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEI 326
C + A +F+ M +R+LV WN +I G HG+ + F + + PD+I
Sbjct: 556 CGDLMSAMNLFNDMPERDLVSWNTIIAGFVQHGENQFAFDYFKMMQE-----SGVKPDQI 610
Query: 327 TFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRK 386
TF G++ AC E LTEGR+ +I + + + ++Y ++A +
Sbjct: 611 TFTGLLNACASPEALTEGRR-LHALITEAALDCDVVVGTGLISMYTKCGSIDDAHLVFHN 669
Query: 387 MPEDN 391
+P+ N
Sbjct: 670 LPKKN 674
Score = 130 bits (328), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 77/276 (27%), Positives = 128/276 (46%), Gaps = 36/276 (13%)
Query: 70 QGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLI 129
Q + M + G P+ FVSL +C +E+G H + G+D E+ V +L+
Sbjct: 289 QACNLFQVMEEEGVQPDKVAFVSLLKACNHPEALEQGKRVHARMKEVGLDTEIYVGTALL 348
Query: 130 NMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNI 189
+MY + G M A E+F+++ RNVVSW
Sbjct: 349 SMY-------------------------------TKCGSMEDALEVFNLVKGRNVVSWTA 377
Query: 190 MISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTS 249
MI+G+++ G + F +M++SG N T S+L AC R + +GR +H ++
Sbjct: 378 MIAGFAQHGRMEEAFLFFNKMIESGIEPNRVTFMSILGACSRPSALKQGRQIHDRIIKAG 437
Query: 250 LKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFT 309
+ + TAL+ +Y+KC + A+ VF+ ++ +N+V WNAMI + H K + + F
Sbjct: 438 YITDDRVRTALLSMYAKCGSLMDARNVFERISKQNVVAWNAMITAYVQHEKYDNAVATFQ 497
Query: 310 ALVNGTVAGGSISPDEITFIGVICACVRAELLTEGR 345
AL+ I PD TF ++ C + L G+
Sbjct: 498 ALLK-----EGIKPDSSTFTSILNVCKSPDALELGK 528
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 75/362 (20%), Positives = 152/362 (41%), Gaps = 52/362 (14%)
Query: 141 ARNMFVQMSPRDLIS--------WNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMIS 192
+R V SPR +I + + SG G +E DI +N N ++
Sbjct: 24 SRQFIVSFSPRLVILEEFDTFRLYTTSFSGSYSKGQ---GNEFVDI---KNTQRANAFLN 77
Query: 193 GYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKP 252
SK+G ++ + + + + +T +S+L C + +G +H + + ++P
Sbjct: 78 RLSKAGQLSEAMLVLLSVDSPHIQIHRQTYSSLLQLCIKHKNLGDGERIHNHIKFSKIQP 137
Query: 253 NIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALV 312
+I + LI +Y+KC A+++FD M D+++ WN ++ G+ H + EE +L +V
Sbjct: 138 DIFMWNMLISMYAKCGNTNSAKQIFDEMPDKDVYSWNLLLGGYVQHRRYEEAFRLHEQMV 197
Query: 313 NGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYA 372
+ PD+ TF+ ++ AC A+ + +G + F +++ F + N++
Sbjct: 198 Q-----DGVKPDKYTFVYMLNACADAKNVDKGGELFSLILNAGWDTDLFVGT-ALINMHI 251
Query: 373 GAELTEEAEEILRKMPE-----------------------------DNDNMSFESIMWVS 403
++A ++ +P + + + + + +VS
Sbjct: 252 KCGGVDDALKVFNNLPRRDLITWTSMITGLARHRQFKQACNLFQVMEEEGVQPDKVAFVS 311
Query: 404 LLSLCRFQGAVAMVERLAKSF--VDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKR 461
LL C A+ +R+ V +D + + LL++Y G ED V L+K R
Sbjct: 312 LLKACNHPEALEQGKRVHARMKEVGLDTEIYVGTA-LLSMYTKCGSMEDALEVFNLVKGR 370
Query: 462 RM 463
+
Sbjct: 371 NV 372
>gi|147811906|emb|CAN68178.1| hypothetical protein VITISV_000846 [Vitis vinifera]
Length = 633
Score = 245 bits (625), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 149/504 (29%), Positives = 244/504 (48%), Gaps = 55/504 (10%)
Query: 1 MKQLLQIQAHLITSGLFFNNSFWTINLLK--HSADFGSPDYTVLVFKCINNPGTFCVNAV 58
+K++ Q Q + SGLF N+ F ++ + GS Y +F+ F N +
Sbjct: 19 VKEVEQTQCLITKSGLF-NHPFVISKIISFLSLSPLGSLVYAQAIFEDTTMDNPFVCNTM 77
Query: 59 IKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKT--------GCVE-----R 105
I+AY+ S P + + Y M + + + + +CA+ C + +
Sbjct: 78 IRAYAKSVFPIKAIYLYNFMHRKDIKSDHFMYPFGLKACARVLWCNEGDIKCTQLDIACK 137
Query: 106 GGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGH-- 163
G H + G+D + + NSL+ +Y G +D AR +F +M+ + + SWN ++S +
Sbjct: 138 GAEIHCRLFRLGLDQDCFIQNSLVYLYSQCGFLDLARRVFDEMTEKTITSWNVMISAYDQ 197
Query: 164 -----------------------------VRSGDMSAAHELFDIMPERNVVSWNIMISGY 194
+R G + A +F MPER+ VSWN MI+GY
Sbjct: 198 INDFDSADSLIGSMPGKNVVSWNMLIARYIRLGKIEDAKAVFQEMPERDAVSWNSMIAGY 257
Query: 195 SKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNI 254
+ + +L LFREM + D T+ SVL AC + GR +H + K
Sbjct: 258 VQIKDYARALALFREMEIANVEATDITLISVLGACAETGALEIGRKIHLSLKQREYKIEG 317
Query: 255 ILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNG 314
L AL+D+Y+KC + +A VF + +++ CWNAMI+ +HG EE ++LF+ +
Sbjct: 318 YLSNALVDMYAKCGHLNLAWEVFSELKMKHISCWNAMIVSLAVHGYCEEALRLFSTM-EM 376
Query: 315 TVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGA 374
+V G P+ +TFIGV+ AC L+ EGRK+F +M++ YKI P+ HY CM +L +
Sbjct: 377 SVDGA--RPNRVTFIGVLIACSHKGLVDEGRKFFNRMVNEYKIMPDIKHYGCMVDLLSRC 434
Query: 375 ELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSR 434
L +EA +++ MP + + S++W +LL CR V + E + M+P
Sbjct: 435 GLLKEAHHMIKTMPFEAN-----SVLWRTLLGACRVHHHVDLAEESFQQLGKMEPLRDGD 489
Query: 435 YQFLLNVYAVAGQWEDVARVRELM 458
Y L N+YA A +W DV R +++
Sbjct: 490 YVLLSNIYAEAQRWNDVERASKIL 513
>gi|449484291|ref|XP_004156841.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At4g14050, mitochondrial-like [Cucumis sativus]
Length = 611
Score = 245 bits (625), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 149/498 (29%), Positives = 251/498 (50%), Gaps = 15/498 (3%)
Query: 6 QIQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSNS 65
++ + +I +G F +S + LL G + +F + N +++ A++ +
Sbjct: 24 ELHSQIIKAG-FDKSSLLSNTLLDVYGKCGLIPQALQLFDEMPNRDHVSWASILTAHNKA 82
Query: 66 CVPDQGVVFYLQMI-KNGFMPNSYTFVSLFGSCAKTGCVERGGMCHG-LALKNGVDFELP 123
+P + + M +G P+ + F + +C+ G + G H L D E+
Sbjct: 83 LIPRRTLSMLNTMFTHDGLQPDHFVFACIVRACSSLGYLRLGKQVHARFMLSXFCDDEV- 141
Query: 124 VMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERN 183
V +SLI+MY G D AR +F + ++ +SW S++SG+ RSG A +LF P RN
Sbjct: 142 VKSSLIDMYTKCGQPDEARAVFDSILFKNSVSWTSMISGYARSGRKCEAMDLFLQAPVRN 201
Query: 184 VVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDK-TMASVLTACGRSARFNEGRSVH 242
+ SW +ISG +SG+ S LF EM + G D ++SV+ C A G+ +H
Sbjct: 202 LFSWTALISGLIQSGHGIYSFSLFNEMRREGIDIVDPLVLSSVVGGCANLALLELGKQIH 261
Query: 243 GYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPE 302
G + + + + AL+D+Y+KC + A+ +F M ++++ W ++I+G HGK E
Sbjct: 262 GLVIALGFESCLFISNALVDMYAKCSDILAAKDIFYRMPRKDVISWTSIIVGTAQHGKAE 321
Query: 303 EGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFA 362
E + L+ +V I P+E+TF+G++ AC A L++ GR+ FR M Y I P+
Sbjct: 322 EALTLYDEMVL-----SRIKPNEVTFVGLLYACSHAGLVSRGRELFRSMTTDYSINPSLQ 376
Query: 363 HYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAK 422
HY C+ +L + + +EAE +L K+P D + W SLLS C + M R+A
Sbjct: 377 HYTCLLDLLSRSGHLDEAENLLDKIPFKPDEPT-----WASLLSACMRHNNLEMGVRIAD 431
Query: 423 SFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLKEVVEKLK 482
+D+ P+D S Y L NVYA A W V++VR+LM + + PG +D + +
Sbjct: 432 RVLDLKPEDPSTYILLSNVYAGAEMWGSVSKVRKLMSSMEVRKEPGYSSIDFGKDSQVFH 491
Query: 483 VGHFWRGGMKEEVNKMME 500
G MK E+ +++
Sbjct: 492 AGESCDHPMKNEICNLLK 509
Score = 91.3 bits (225), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 81/342 (23%), Positives = 141/342 (41%), Gaps = 59/342 (17%)
Query: 86 NSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMF 145
N F+ CA+ G H +K G D + N+L+++YG G + A +F
Sbjct: 2 NISHFLHQLQLCARRQSASAAGELHSQIIKAGFDKSSLLSNTLLDVYGKCGLIPQALQLF 61
Query: 146 VQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLK 205
+M RD +SW SI++ H ++ ++P R + N M +
Sbjct: 62 DEMPNRDHVSWASILTAHNKA-----------LIPRRTLSMLNTMFT------------- 97
Query: 206 LFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYS 265
G + + A ++ AC G+ VH + + + ++ ++LID+Y+
Sbjct: 98 ------HDGLQPDHFVFACIVRACSSLGYLRLGKQVHARFMLSXFCDDEVVKSSLIDMYT 151
Query: 266 KCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLF-----------TALVNG 314
KC + + A+ VFDS+ +N V W +MI G+ G+ E + LF TAL++G
Sbjct: 152 KCGQPDEARAVFDSILFKNSVSWTSMISGYARSGRKCEAMDLFLQAPVRNLFSWTALISG 211
Query: 315 TVAGG----SIS------------PDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIK 358
+ G S S D + V+ C LL G++ +I
Sbjct: 212 LIQSGHGIYSFSLFNEMRREGIDIVDPLVLSSVVGGCANLALLELGKQIHGLVIALGFES 271
Query: 359 PNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIM 400
F + ++YA A++I +MP D +S+ SI+
Sbjct: 272 CLFISN-ALVDMYAKCSDILAAKDIFYRMPR-KDVISWTSII 311
>gi|302770521|ref|XP_002968679.1| hypothetical protein SELMODRAFT_90123 [Selaginella moellendorffii]
gi|300163184|gb|EFJ29795.1| hypothetical protein SELMODRAFT_90123 [Selaginella moellendorffii]
Length = 818
Score = 245 bits (625), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 130/484 (26%), Positives = 248/484 (51%), Gaps = 17/484 (3%)
Query: 6 QIQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSNS 65
+I A ++ +G F + L+ GS VF + N +I Y +
Sbjct: 228 KIHAEIVANG-FDTDLVVATALINMYGKCGSSHEAREVFDKMKKRDMVSWNVMIGCYVLN 286
Query: 66 CVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVM 125
+ + Y ++ GF TFVS+ G+C+ + +G + H L+ G+D E+ V
Sbjct: 287 GDFHEALELYQKLDMEGFKRTKATFVSILGACSSVKALAQGRLVHSHILERGLDSEVAVA 346
Query: 126 NSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSG---DMSAAHELFDIMPER 182
+L+NMY G+++ AR +F M RD ++W++++ + +G D A ++FD + R
Sbjct: 347 TALVNMYAKCGSLEEARKVFNAMKNRDAVAWSTLIGAYASNGYGKDARKARKVFDRLGSR 406
Query: 183 NVVSWNIMISGYSKSGNPGCSLKLFREMM-KSGFRGNDKTMASVLTACGRSARFNEGRSV 241
+ +SWN MI+ Y ++G ++K+FREM +G + + T +VL AC R +E +++
Sbjct: 407 DTISWNAMITTYVQNGCAVAAMKIFREMTGAAGLKPDAVTFIAVLEACASLGRLSEVKAL 466
Query: 242 HGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKP 301
H + L+ N+++ LI++Y++C +E A+R+F + ++ +V W AM+ +G+
Sbjct: 467 HAQISESELESNVVVTNTLINMYARCGSLEEAERLFAAAKEKTVVSWTAMVAAFSQYGRY 526
Query: 302 EEGIKLFTAL-VNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPN 360
E + LF + + G + PD++T+ ++ C L +G +YF M + + + P
Sbjct: 527 AEALDLFQEMDLEG------VKPDDVTYTSILFVCTHGGSLEQGWRYFTDMAELHALAPT 580
Query: 361 FAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERL 420
H+ M +L + +A+E+L MP + D + W++ L+ CR G + + E
Sbjct: 581 ADHFAAMVDLLGRSGRLFDAKELLESMPFEPD-----PVAWMTFLTACRIHGKLELGEAA 635
Query: 421 AKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLKEVVEK 480
A+ ++DP + Y + N+YA G WE VA VR+ M++R + ++PG +++ + +
Sbjct: 636 AERVYELDPSSTAPYIAMSNIYAAHGMWEKVASVRKKMEERGLKKLPGLSFIEVDGKLHE 695
Query: 481 LKVG 484
G
Sbjct: 696 FSSG 699
Score = 139 bits (351), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 98/392 (25%), Positives = 172/392 (43%), Gaps = 49/392 (12%)
Query: 56 NAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALK 115
NA+I AY+ + + +V Y +M G + TFVS+ G+C+ + +G H
Sbjct: 79 NAMIAAYAQNGHSTEALVLYWRMNLQGLGTDHVTFVSVLGACSS---LAQGREIHNRVFY 135
Query: 116 NGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHEL 175
+G+D + N+L+ MY FG++ A+ MF + RD SWN+++ H +SGD S A
Sbjct: 136 SGLDSFQSLANALVTMYARFGSVGDAKRMFQSLQTRDETSWNAVILAHSQSGDWSGA--- 192
Query: 176 FDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARF 235
L++F+E MK + N T +V++
Sbjct: 193 ----------------------------LRIFKE-MKCDVKPNSTTYINVISGFSTPEVL 223
Query: 236 NEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGH 295
EGR +H V ++++ TALI++Y KC A+ VFD M R++V WN MI +
Sbjct: 224 PEGRKIHAEIVANGFDTDLVVATALINMYGKCGSSHEAREVFDKMKKRDMVSWNVMIGCY 283
Query: 296 CIHGKPEEGIKLFTAL-VNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDF 354
++G E ++L+ L + G + TF+ ++ AC + L +GR +++
Sbjct: 284 VLNGDFHEALELYQKLDMEG------FKRTKATFVSILGACSSVKALAQGRLVHSHILE- 336
Query: 355 YKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAV 414
+ A + N+YA EEA ++ M + ++ W +L+ G
Sbjct: 337 RGLDSEVAVATALVNMYAKCGSLEEARKVFNAMKNRD------AVAWSTLIGAYASNGYG 390
Query: 415 AMVERLAKSFVDMDPQDFSRYQFLLNVYAVAG 446
+ K F + +D + ++ Y G
Sbjct: 391 KDARKARKVFDRLGSRDTISWNAMITTYVQNG 422
Score = 112 bits (279), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 104/409 (25%), Positives = 169/409 (41%), Gaps = 73/409 (17%)
Query: 85 PNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNM 144
P++ TF+++ SC+ G V G H + + + V N+LI+MYG ++ AR++
Sbjct: 5 PDNVTFLTVLCSCSSCGDVVEGRALHERIRCSRFERDTMVGNALISMYGKCDSLVDARSV 64
Query: 145 FVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSL 204
F M R +RNVVSWN MI+ Y+++G+ +L
Sbjct: 65 FESMDWR-----------------------------QRNVVSWNAMIAAYAQNGHSTEAL 95
Query: 205 KLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLY 264
L+ M G + T SVL AC A +GR +H + L L AL+ +Y
Sbjct: 96 VLYWRMNLQGLGTDHVTFVSVLGACSSLA---QGREIHNRVFYSGLDSFQSLANALVTMY 152
Query: 265 SKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPD 324
++ V A+R+F S+ R+ WNA+IL H G +++F + + P+
Sbjct: 153 ARFGSVGDAKRMFQSLQTRDETSWNAVILAHSQSGDWSGALRIFKEM------KCDVKPN 206
Query: 325 EITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEIL 384
T+I VI E+L EGRK +++ + + N+Y + EA E+
Sbjct: 207 STTYINVISGFSTPEVLPEGRKIHAEIVA-NGFDTDLVVATALINMYGKCGSSHEAREVF 265
Query: 385 RKMPE-----------------------------DNDNMSFESIMWVSLLSLCRFQGAVA 415
KM + D + +VS+L C A+A
Sbjct: 266 DKMKKRDMVSWNVMIGCYVLNGDFHEALELYQKLDMEGFKRTKATFVSILGACSSVKALA 325
Query: 416 MVERLAKSFV---DMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKR 461
RL S + +D + + L+N+YA G E+ +V MK R
Sbjct: 326 Q-GRLVHSHILERGLDSE-VAVATALVNMYAKCGSLEEARKVFNAMKNR 372
>gi|449520543|ref|XP_004167293.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
repeat-containing protein At1g68930-like [Cucumis
sativus]
Length = 695
Score = 244 bits (624), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 131/461 (28%), Positives = 235/461 (50%), Gaps = 45/461 (9%)
Query: 56 NAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALK 115
N I +S + P + + + +M + GF P YT VS+ + A+ + G HG +
Sbjct: 124 NTTIAGFSGNSCPQESLELFKRMQREGFEPTEYTIVSILNASAQLLDLRYGKQIHGSIIV 183
Query: 116 NGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGD------- 168
+ + N+L +MY G ++ AR +F ++ ++L+SWN ++SG+ ++G
Sbjct: 184 RNFLGNVFIWNALTDMYAKCGEIEQARWLFDCLTKKNLVSWNLMISGYAKNGQPEKCIGL 243
Query: 169 ----------------------------MSAAHELFDIMPERNVVSWNIMISGYSKSGNP 200
+ A +F E+++V W M+ GY+K+G
Sbjct: 244 LHQMRLSGHMPDQVTMSTIIAAYCQCGRVDEARRVFSEFKEKDIVCWTAMMVGYAKNGRE 303
Query: 201 GCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTAL 260
+L LF EM+ + T++SV+++C + A + G++VHG ++ L N+++ +AL
Sbjct: 304 EDALLLFNEMLLEHIEPDSYTLSSVVSSCAKLASLHHGQAVHGKSILAGLNNNLLVSSAL 363
Query: 261 IDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGS 320
ID+YSKC ++ A+ VF+ M RN+V WNAMI+G +G ++ ++LF ++
Sbjct: 364 IDMYSKCGFIDDARSVFNLMPTRNVVSWNAMIVGCAQNGHDKDALELFENMLQ-----QK 418
Query: 321 ISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEA 380
PD +TFIG++ AC+ + +G++YF + + + + P HY CM NL E+A
Sbjct: 419 FKPDNVTFIGILSACLHCNWIEQGQEYFDSISNQHGMTPTLDHYACMVNLLGRTGRIEQA 478
Query: 381 EEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLN 440
+++ M D D ++W +LLS+C +G + E A+ ++DP Y L N
Sbjct: 479 VALIKNMAHDPD-----FLIWSTLLSICSTKGDIVNAEVAARHLFELDPTIAVPYIMLSN 533
Query: 441 VYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLKEVVEKL 481
+YA G+W+DVA VR LMK + + + G +++ V +
Sbjct: 534 MYASMGRWKDVASVRNLMKSKNVKKFAGFSWIEIDNEVHRF 574
Score = 149 bits (376), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 76/226 (33%), Positives = 130/226 (57%), Gaps = 7/226 (3%)
Query: 126 NSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVV 185
N L+++Y FG + A+N+F +M RD SWN+++S + +SG + FD MP R+ V
Sbjct: 62 NQLLHLYAKFGKLRDAQNLFDKMLKRDXFSWNALLSAYAKSGSIQNLKATFDRMPFRDSV 121
Query: 186 SWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYT 245
S+N I+G+S + P SL+LF+ M + GF + T+ S+L A + G+ +HG
Sbjct: 122 SYNTTIAGFSGNSCPQESLELFKRMQREGFEPTEYTIVSILNASAQLLDLRYGKQIHGSI 181
Query: 246 VRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGI 305
+ + N+ + AL D+Y+KC ++E A+ +FD + +NLV WN MI G+ +G+PE+ I
Sbjct: 182 IVRNFLGNVFIWNALTDMYAKCGEIEQARWLFDCLTKKNLVSWNLMISGYAKNGQPEKCI 241
Query: 306 KLFTAL-VNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQ 350
L + ++G + PD++T +I A + + E R+ F +
Sbjct: 242 GLLHQMRLSGHM------PDQVTMSTIIAAYCQCGRVDEARRVFSE 281
Score = 85.5 bits (210), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 58/260 (22%), Positives = 116/260 (44%), Gaps = 33/260 (12%)
Query: 35 GSPDYTVLVFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLF 94
G D VF C A++ Y+ + + ++ + +M+ P+SYT S+
Sbjct: 270 GRVDEARRVFSEFKEKDIVCWTAMMVGYAKNGREEDALLLFNEMLLEHIEPDSYTLSSVV 329
Query: 95 GSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLI 154
SCAK + G HG ++ G++ L V ++LI+MY G +D AR++F M R+++
Sbjct: 330 SSCAKLASLHHGQAVHGKSILAGLNNNLLVSSALIDMYSKCGFIDDARSVFNLMPTRNVV 389
Query: 155 SWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSG 214
SWN+++ G ++G A L+LF M++
Sbjct: 390 SWNAMIVGCAQNGHDKDA-------------------------------LELFENMLQQK 418
Query: 215 FRGNDKTMASVLTACGRSARFNEGRS-VHGYTVRTSLKPNIILDTALIDLYSKCQKVEVA 273
F+ ++ T +L+AC +G+ + + + P + +++L + ++E A
Sbjct: 419 FKPDNVTFIGILSACLHCNWIEQGQEYFDSISNQHGMTPTLDHYACMVNLLGRTGRIEQA 478
Query: 274 QRVFDSMA-DRNLVCWNAMI 292
+ +MA D + + W+ ++
Sbjct: 479 VALIKNMAHDPDFLIWSTLL 498
Score = 40.0 bits (92), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 43/201 (21%), Positives = 85/201 (42%), Gaps = 8/201 (3%)
Query: 19 NNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQM 78
NN + L+ + G D VF + NA+I + + + + M
Sbjct: 355 NNLLVSSALIDMYSKCGFIDDARSVFNLMPTRNVVSWNAMIVGCAQNGHDKDALELFENM 414
Query: 79 IKNGFMPNSYTFVSLFGSCAKTGCVERGG-MCHGLALKNGVDFELPVMNSLINMYGCFGA 137
++ F P++ TF+ + +C +E+G ++ ++G+ L ++N+ G G
Sbjct: 415 LQQKFKPDNVTFIGILSACLHCNWIEQGQEYFDSISNQHGMTPTLDHYACMVNLLGRTGR 474
Query: 138 MDCARNMFVQMSPR-DLISWNSIVSGHVRSGDM----SAAHELFDIMPERNVVSWNIMIS 192
++ A + M+ D + W++++S GD+ AA LF++ P + IM+S
Sbjct: 475 IEQAVALIKNMAHDPDFLIWSTLLSICSTKGDIVNAEVAARHLFELDP--TIAVPYIMLS 532
Query: 193 GYSKSGNPGCSLKLFREMMKS 213
S + R +MKS
Sbjct: 533 NMYASMGRWKDVASVRNLMKS 553
>gi|357142117|ref|XP_003572465.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Brachypodium distachyon]
Length = 613
Score = 244 bits (624), Expect = 6e-62, Method: Compositional matrix adjust.
Identities = 144/475 (30%), Positives = 246/475 (51%), Gaps = 18/475 (3%)
Query: 1 MKQLLQIQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIK 60
+++ Q+ H+ +G F + L+ A G D VF + N +I
Sbjct: 120 LREGEQVHVHVFKNG-FQTDERIATTLVDLYARCGRLDDARRVFDRLLVKDAQLYNTMIA 178
Query: 61 AYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDF 120
AY + + + M + N++T + + G + G ++ H + NGV
Sbjct: 179 AYMEAGEVELAEELFEVMPER----NTHTLMEMVGGYSARGDMDSAK--HVFEMANGV-V 231
Query: 121 ELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVS-GHVRSGDMSAAHELFDIM 179
+ + ++I+ + G++D AR++F M RD+ +WN ++ + + G + A ++FD M
Sbjct: 232 NMVLCTAMISGFAKTGSVDDARSVFDGMRQRDVATWNVMIGVMYAKCGLVEDARKVFDAM 291
Query: 180 PERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGR 239
PERNVV W MISGY++ G ++KLFR+M SG + +D T+A+V+++CG+ + GR
Sbjct: 292 PERNVVCWTSMISGYTQVGKFKQAVKLFRDMQISGVKADDATIATVVSSCGQMGALDLGR 351
Query: 240 SVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHG 299
VH Y L I + +LID+YSKC ++ A +F + R+ W MI+G ++G
Sbjct: 352 YVHAYCDVHGLGKGISVKNSLIDMYSKCGDIKKAHEIFRGLVKRDDFSWTVMIMGFAVNG 411
Query: 300 KPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKP 359
E + LF + G + P+EITF+GV+ +C L+ +G +F +M Y I P
Sbjct: 412 LSGEALDLFAQMEE----EGEVMPNEITFLGVLTSCSHGGLVEQGYHHFHRMSKVYGIAP 467
Query: 360 NFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVER 419
HY CM +L A+L EAE+ + +MP ++ + +W SLL CR +G V + E
Sbjct: 468 RIEHYGCMVDLLGRAKLLAEAEQFIEEMP-----IAPDVAIWRSLLFACRARGEVGLAEY 522
Query: 420 LAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDL 474
+A+ +++P L NVYA +W DV +VR M + R+ + PGC ++++
Sbjct: 523 VAERVEELEPSRCGGNVLLSNVYATTSRWVDVNKVRTGMGRSRVSKRPGCSVIEV 577
Score = 134 bits (337), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 100/394 (25%), Positives = 188/394 (47%), Gaps = 27/394 (6%)
Query: 2 KQLLQIQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKA 61
+QL Q+ A + G +SF L++ AD G V + +
Sbjct: 28 RQLEQLHARAVLLG-HARSSFVAAKLVRAFADLGHLRAARAVAAVRAHSQS--------- 77
Query: 62 YSNSCVPDQGVVFYLQMIKN--GFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVD 119
+S V Y QM + G P ++T S+ + A+ + G H KNG
Sbjct: 78 -GSSAAARDAVALYAQMHRGCPGVRPLTFTVSSVLKAAARREMLREGEQVHVHVFKNGFQ 136
Query: 120 FELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIM 179
+ + +L+++Y G +D AR +F ++ +D +N++++ ++ +G++ A ELF++M
Sbjct: 137 TDERIATTLVDLYARCGRLDDARRVFDRLLVKDAQLYNTMIAAYMEAGEVELAEELFEVM 196
Query: 180 PERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGR 239
PERN + M+ GYS G+ + +F M +G N ++++ ++ ++ R
Sbjct: 197 PERNTHTLMEMVGGYSARGDMDSAKHVFE--MANGVV-NMVLCTAMISGFAKTGSVDDAR 253
Query: 240 SV-HGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIH 298
SV G R N+++ +Y+KC VE A++VFD+M +RN+VCW +MI G+
Sbjct: 254 SVFDGMRQRDVATWNVMIGV----MYAKCGLVEDARKVFDAMPERNVVCWTSMISGYTQV 309
Query: 299 GKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIK 358
GK ++ +KLF + ++G + D+ T V+ +C + L GR Y D + +
Sbjct: 310 GKFKQAVKLFRDM---QISG--VKADDATIATVVSSCGQMGALDLGR-YVHAYCDVHGLG 363
Query: 359 PNFAHYWCMANLYAGAELTEEAEEILRKMPEDND 392
+ + ++Y+ ++A EI R + + +D
Sbjct: 364 KGISVKNSLIDMYSKCGDIKKAHEIFRGLVKRDD 397
>gi|125555946|gb|EAZ01552.1| hypothetical protein OsI_23585 [Oryza sativa Indica Group]
Length = 530
Score = 244 bits (624), Expect = 6e-62, Method: Compositional matrix adjust.
Identities = 147/470 (31%), Positives = 237/470 (50%), Gaps = 11/470 (2%)
Query: 6 QIQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSNS 65
+ A I +G F +++ +L++ G D VF + + N +++ Y
Sbjct: 70 KAHAAAIKTG-FRWDAYTGSSLMEMYTMLGRVDIARKVFDEMPSRALVLWNMMVRCYIRC 128
Query: 66 CVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVM 125
V QM ++G P+ T V+ +C++ + G H + + N F LPV
Sbjct: 129 GRYSAAVALSEQMERSGVTPDRVTLVTAVTACSRARDLSLGRRIH-VYMDNVFGFNLPVA 187
Query: 126 NSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVV 185
N+L++MY ++ A +F QM R++ISW +VSG+ +G + A LF+ E++++
Sbjct: 188 NALLDMYTKNDCLEEAVKLFEQMPARNIISWTILVSGYGLAGQLDKARVLFNQCKEKDLI 247
Query: 186 SWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYT 245
W MI+ + G +L LFR+M + T+ ++LT C ++G +H Y
Sbjct: 248 LWTAMINACVQHGCFEEALTLFRDMQMQRVEPDRFTVVTLLTCCANLGALDQGEWIHQYA 307
Query: 246 VRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGI 305
+ +K + +L TALID+YSKC +E + VF M R+ W A+I G +G+ +
Sbjct: 308 EQRKMKIDAVLGTALIDMYSKCGHIEKSLEVFWRMQGRDATAWTAIICGLATNGQAGRAL 367
Query: 306 KLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYW 365
+LF + V PD +TFIGV+ AC L+ EGRK F M + Y+I+P HY
Sbjct: 368 ELFQDMQRSKV-----KPDGVTFIGVLSACCHGGLVDEGRKQFHAMREVYQIEPRVEHYS 422
Query: 366 CMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFV 425
C+ NL A L +EAE ++ +P + D M ++ +LL+ C+ G V M ERL K
Sbjct: 423 CLVNLLGRAGLLDEAERLIGDVPINKDAMP----LFGALLTACKAHGNVEMSERLTKRIC 478
Query: 426 DMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLK 475
+ D Q + NVYA A +WEDV RVR M + + GC L+++K
Sbjct: 479 EQDSQITDVNLLMSNVYATASRWEDVIRVRGKMAHPTVKKTAGCSLIEVK 528
Score = 103 bits (258), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 81/371 (21%), Positives = 160/371 (43%), Gaps = 60/371 (16%)
Query: 56 NAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALK 115
N +I+ + + + Y + G + +S+T+ + + G H A+K
Sbjct: 18 NVLIRTLARRGSFARVMAVYYDLRARGLVADSFTYPFVLRAVGVLKLSVEGRKAHAAAIK 77
Query: 116 NGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHEL 175
G ++ +SL+ MY G +D AR +F +M R L+ WN +V ++R G SAA
Sbjct: 78 TGFRWDAYTGSSLMEMYTMLGRVDIARKVFDEMPSRALVLWNMMVRCYIRCGRYSAA--- 134
Query: 176 FDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARF 235
+ L +M +SG + T+ + +TAC R+
Sbjct: 135 ----------------------------VALSEQMERSGVTPDRVTLVTAVTACSRARDL 166
Query: 236 NEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGH 295
+ GR +H Y + N+ + AL+D+Y+K +E A ++F+ M RN++ W ++ G+
Sbjct: 167 SLGRRIHVY-MDNVFGFNLPVANALLDMYTKNDCLEEAVKLFEQMPARNIISWTILVSGY 225
Query: 296 CIHGK-----------PEEGIKLFTALVNGTVAGG---------------SISPDEITFI 329
+ G+ E+ + L+TA++N V G + PD T +
Sbjct: 226 GLAGQLDKARVLFNQCKEKDLILWTAMINACVQHGCFEEALTLFRDMQMQRVEPDRFTVV 285
Query: 330 GVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPE 389
++ C L +G ++ Q + K+K + + ++Y+ E++ E+ +M +
Sbjct: 286 TLLTCCANLGALDQG-EWIHQYAEQRKMKIDAVLGTALIDMYSKCGHIEKSLEVFWRM-Q 343
Query: 390 DNDNMSFESIM 400
D ++ +I+
Sbjct: 344 GRDATAWTAII 354
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 53/219 (24%), Positives = 103/219 (47%), Gaps = 13/219 (5%)
Query: 188 NIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVR 247
N++I ++ G+ + ++ ++ G + T VL A G EGR H ++
Sbjct: 18 NVLIRTLARRGSFARVMAVYYDLRARGLVADSFTYPFVLRAVGVLKLSVEGRKAHAAAIK 77
Query: 248 TSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKL 307
T + + ++L+++Y+ +V++A++VFD M R LV WN M+ + G+ + L
Sbjct: 78 TGFRWDAYTGSSLMEMYTMLGRVDIARKVFDEMPSRALVLWNMMVRCYIRCGRYSAAVAL 137
Query: 308 FTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCM 367
+ + ++PD +T + + AC RA L+ GR+ M + + A+ +
Sbjct: 138 -----SEQMERSGVTPDRVTLVTAVTACSRARDLSLGRRIHVYMDNVFGFNLPVAN--AL 190
Query: 368 ANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLS 406
++Y + EEA ++ +MP N I W L+S
Sbjct: 191 LDMYTKNDCLEEAVKLFEQMPARN------IISWTILVS 223
>gi|15226158|ref|NP_180932.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75101013|sp|P93011.1|PP182_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g33760
gi|1707020|gb|AAC69141.1| hypothetical protein [Arabidopsis thaliana]
gi|330253787|gb|AEC08881.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 583
Score = 244 bits (624), Expect = 6e-62, Method: Compositional matrix adjust.
Identities = 135/475 (28%), Positives = 245/475 (51%), Gaps = 38/475 (8%)
Query: 1 MKQLLQIQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIK 60
+KQL Q+ AHLI +G + S T L+ + + YT L+F + P F N+VIK
Sbjct: 22 VKQLQQVHAHLIVTGYGRSRSLLT-KLITLACSARAIAYTHLLFLSVPLPDDFLFNSVIK 80
Query: 61 AYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDF 120
+ S +P V +Y +M+ + P++YTF S+ SCA + G H A+ +G
Sbjct: 81 STSKLRLPLHCVAYYRRMLSSNVSPSNYTFTSVIKSCADLSALRIGKGVHCHAVVSGFGL 140
Query: 121 ELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMP 180
+ V +L+ Y + GDM A ++FD MP
Sbjct: 141 DTYVQAALVTFYS-------------------------------KCGDMEGARQVFDRMP 169
Query: 181 ERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRS 240
E+++V+WN ++SG+ ++G ++++F +M +SGF + T S+L+AC ++ + G
Sbjct: 170 EKSIVAWNSLVSGFEQNGLADEAIQVFYQMRESGFEPDSATFVSLLSACAQTGAVSLGSW 229
Query: 241 VHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGK 300
VH Y + L N+ L TALI+LYS+C V A+ VFD M + N+ W AMI + HG
Sbjct: 230 VHQYIISEGLDLNVKLGTALINLYSRCGDVGKAREVFDKMKETNVAAWTAMISAYGTHGY 289
Query: 301 PEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPN 360
++ ++LF + + G I P+ +TF+ V+ AC A L+ EGR +++M Y++ P
Sbjct: 290 GQQAVELFNKMEDDC---GPI-PNNVTFVAVLSACAHAGLVEEGRSVYKRMTKSYRLIPG 345
Query: 361 FAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERL 420
H+ CM ++ A +EA + + ++ D + +W ++L C+ + +
Sbjct: 346 VEHHVCMVDMLGRAGFLDEAYKFIHQL--DATGKATAPALWTAMLGACKMHRNYDLGVEI 403
Query: 421 AKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLK 475
AK + ++P + + L N+YA++G+ ++V+ +R+ M + + + G +++++
Sbjct: 404 AKRLIALEPDNPGHHVMLSNIYALSGKTDEVSHIRDGMMRNNLRKQVGYSVIEVE 458
>gi|449507426|ref|XP_004163029.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g34400-like [Cucumis sativus]
Length = 619
Score = 244 bits (624), Expect = 6e-62, Method: Compositional matrix adjust.
Identities = 132/442 (29%), Positives = 231/442 (52%), Gaps = 39/442 (8%)
Query: 43 VFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGC 102
VF I+ N++I YS + V + +M++ GF PN + VS+ G+C + G
Sbjct: 184 VFDEISQKDLVSWNSMISGYSKMRHAGEAVGLFREMMEAGFQPNEMSLVSVLGACGELGD 243
Query: 103 VERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSG 162
++ G ++N + + ++LI+MYG
Sbjct: 244 LKLGTWVEEFVVENKMTLNYFMGSALIHMYG----------------------------- 274
Query: 163 HVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTM 222
+ GD+ +A +FD M +++ V+WN MI+GY+++G ++KLF++M S + T+
Sbjct: 275 --KCGDLVSARRIFDSMKKKDKVTWNAMITGYAQNGMSEEAIKLFQDMRMSSTAPDQITL 332
Query: 223 ASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMAD 282
+L+AC + G+ V Y + ++ + TAL+D+Y+KC ++ A RVF M
Sbjct: 333 IGILSACASIGALDLGKQVEIYASERGFQDDVYVGTALVDMYAKCGSLDNAFRVFYGMPK 392
Query: 283 RNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLT 342
+N V WNAMI HG+ +E + LF +++N GG++SP++ITF+GV+ ACV A L+
Sbjct: 393 KNEVSWNAMISALAFHGQAQEALALFKSMMN---EGGTVSPNDITFVGVLSACVHAGLVD 449
Query: 343 EGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWV 402
EGR+ F M + + P HY CM +L++ A EEA + + MPE D ++
Sbjct: 450 EGRRLFHMMSSSFGLVPKIEHYSCMVDLFSRAGHLEEAWDFVMTMPEKPD-----EVILG 504
Query: 403 SLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRR 462
+LL C+ + + + ER+ K ++++P + Y +YA +W+D AR+R LMK++
Sbjct: 505 ALLGACQKRKNIDISERVMKLLLELEPSNSGNYVISSKLYANLRRWDDSARMRMLMKQKG 564
Query: 463 MGRMPGCRLVDLKEVVEKLKVG 484
+ + PGC +D+ + + G
Sbjct: 565 VSKTPGCSWIDINSQLHEFHAG 586
Score = 194 bits (492), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 135/442 (30%), Positives = 209/442 (47%), Gaps = 61/442 (13%)
Query: 1 MKQLLQIQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIK 60
+KQL QI A L+T+ + NSF L AD Y + F I +P + N +I+
Sbjct: 45 IKQLKQIHAQLLTNSIHKPNSF-----LYKIADLKDFAYASVFFSNILDPTEYSFNVMIR 99
Query: 61 AYSNSCVPDQ-GVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVD 119
S + + FY +M G PN+ T+ LF +C+ VE G M H ++ G+D
Sbjct: 100 GLSTAWNKSSLALEFYSRMKFLGLKPNNLTYPFLFIACSNLLAVENGRMGHCSVIRRGLD 159
Query: 120 FELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIM 179
+ V +SLI MY R G M A ++FD +
Sbjct: 160 EDGHVSHSLITMYA-------------------------------RCGKMGDARKVFDEI 188
Query: 180 PERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGR 239
++++VSWN MISGYSK + G ++ LFREMM++GF+ N+ ++ SVL ACG G
Sbjct: 189 SQKDLVSWNSMISGYSKMRHAGEAVGLFREMMEAGFQPNEMSLVSVLGACGELGDLKLGT 248
Query: 240 SVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHG 299
V + V + N + +ALI +Y KC + A+R+FDSM ++ V WNAMI G+ +G
Sbjct: 249 WVEEFVVENKMTLNYFMGSALIHMYGKCGDLVSARRIFDSMKKKDKVTWNAMITGYAQNG 308
Query: 300 KPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKP 359
EE IKLF + + A PD+IT IG++ AC L G++ ++ Y +
Sbjct: 309 MSEEAIKLFQDMRMSSTA-----PDQITLIGILSACASIGALDLGKQ-----VEIYASER 358
Query: 360 NFAHY----WCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVA 415
F + ++YA + A + MP+ N+ + W +++S F G
Sbjct: 359 GFQDDVYVGTALVDMYAKCGSLDNAFRVFYGMPKKNE------VSWNAMISALAFHGQAQ 412
Query: 416 MVERLAKSFVD----MDPQDFS 433
L KS ++ + P D +
Sbjct: 413 EALALFKSMMNEGGTVSPNDIT 434
>gi|15229345|ref|NP_187126.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75207287|sp|Q9SR01.1|PP212_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At3g04750, mitochondrial; Flags: Precursor
gi|6175175|gb|AAF04901.1|AC011437_16 hypothetical protein [Arabidopsis thaliana]
gi|332640610|gb|AEE74131.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 661
Score = 244 bits (624), Expect = 7e-62, Method: Compositional matrix adjust.
Identities = 147/474 (31%), Positives = 238/474 (50%), Gaps = 17/474 (3%)
Query: 1 MKQLLQIQAHLITSG-LFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVI 59
+ ++ QI H+I SG L N W +L+K + G+ VF + +P N +I
Sbjct: 146 LSEVKQIHCHIIVSGCLSLGNYLWN-SLVKFYMELGNFGVAEKVFARMPHPDVSSFNVMI 204
Query: 60 KAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVD 119
Y+ + + Y +M+ +G P+ YT +SL C + G HG + G
Sbjct: 205 VGYAKQGFSLEALKLYFKMVSDGIEPDEYTVLSLLVCCGHLSDIRLGKGVHGWIERRGPV 264
Query: 120 FE--LPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFD 177
+ L + N+L++MY A+ F M +D+ SWN++V G VR GDM AA +FD
Sbjct: 265 YSSNLILSNALLDMYFKCKESGLAKRAFDAMKKKDMRSWNTMVVGFVRLGDMEAAQAVFD 324
Query: 178 IMPERNVVSWNIMISGYSKSGNPGCSLK-LFREM-MKSGFRGNDKTMASVLTACGRSARF 235
MP+R++VSWN ++ GYSK G +++ LF EM + + + TM S+++ +
Sbjct: 325 QMPKRDLVSWNSLLFGYSKKGCDQRTVRELFYEMTIVEKVKPDRVTMVSLISGAANNGEL 384
Query: 236 NEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGH 295
+ GR VHG +R LK + L +ALID+Y KC +E A VF + ++++ W +MI G
Sbjct: 385 SHGRWVHGLVIRLQLKGDAFLSSALIDMYCKCGIIERAFMVFKTATEKDVALWTSMITGL 444
Query: 296 CIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFY 355
HG ++ ++LF G + ++P+ +T + V+ AC + L+ EG F M D +
Sbjct: 445 AFHGNGQQALQLF-----GRMQEEGVTPNNVTLLAVLTACSHSGLVEEGLHVFNHMKDKF 499
Query: 356 KIKPNFAHYWCMANLYAGAELTEEAEEIL-RKMPEDNDNMSFESIMWVSLLSLCRFQGAV 414
P HY + +L A EEA++I+ +KMP M MW S+LS CR +
Sbjct: 500 GFDPETEHYGSLVDLLCRAGRVEEAKDIVQKKMP-----MRPSQSMWGSILSACRGGEDI 554
Query: 415 AMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPG 468
E + ++P+ Y L N+YA G+W + RE M+ R + + G
Sbjct: 555 ETAELALTELLKLEPEKEGGYVLLSNIYATVGRWGYSDKTREAMENRGVKKTAG 608
>gi|449469094|ref|XP_004152256.1| PREDICTED: pentatricopeptide repeat-containing protein At4g14050,
mitochondrial-like [Cucumis sativus]
Length = 611
Score = 244 bits (623), Expect = 7e-62, Method: Compositional matrix adjust.
Identities = 146/497 (29%), Positives = 250/497 (50%), Gaps = 13/497 (2%)
Query: 6 QIQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSNS 65
++ + +I +G F +S + LL G + +F + N +++ A++ +
Sbjct: 24 ELHSQIIKAG-FDKSSLLSNTLLDVYGKCGLIPQALQLFDEMPNRDHVSWASILTAHNKA 82
Query: 66 CVPDQGVVFYLQMI-KNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPV 124
+P + + M +G P+ + F + +C+ G + G H + + + V
Sbjct: 83 LIPRRTLSMLNTMFTHDGLQPDHFVFACIVRACSSLGYLRLGKQVHARFMLSFFCDDEVV 142
Query: 125 MNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNV 184
+SLI+MY G D AR +F + ++ +SW S++SG+ RSG A +LF P RN+
Sbjct: 143 KSSLIDMYTKCGQPDDARAVFDSILFKNSVSWTSMISGYARSGRKCEAMDLFLQAPVRNL 202
Query: 185 VSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDK-TMASVLTACGRSARFNEGRSVHG 243
SW +ISG +SG+ S LF EM + G D ++SV+ C A G+ +HG
Sbjct: 203 FSWTALISGLIQSGHGIYSFSLFNEMRREGIDIVDPLVLSSVVGGCANLALLELGKQIHG 262
Query: 244 YTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEE 303
+ + + + AL+D+Y+KC + A+ +F M ++++ W ++I+G HGK EE
Sbjct: 263 LVIALGFESCLFISNALVDMYAKCSDILAAKDIFYRMPRKDVISWTSIIVGTAQHGKAEE 322
Query: 304 GIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAH 363
+ L+ +V I P+E+TF+G++ AC A L++ GR+ FR M Y I P+ H
Sbjct: 323 ALTLYDEMV-----LSRIKPNEVTFVGLLYACSHAGLVSRGRELFRSMTTDYSINPSLQH 377
Query: 364 YWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKS 423
Y C+ +L + + +EAE +L K+P D + W SLLS C + M R+A
Sbjct: 378 YTCLLDLLSRSGHLDEAENLLDKIPFKPDEPT-----WASLLSACMRHNNLEMGVRIADR 432
Query: 424 FVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLKEVVEKLKV 483
+D+ P+D S Y L NVYA A W V++VR+LM + + PG +D + +
Sbjct: 433 VLDLKPEDPSTYILLSNVYAGAEMWGSVSKVRKLMSSMEVRKEPGYSSIDFGKDSQVFHA 492
Query: 484 GHFWRGGMKEEVNKMME 500
G MK E+ +++
Sbjct: 493 GESCDHPMKNEICNLLK 509
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 81/342 (23%), Positives = 141/342 (41%), Gaps = 59/342 (17%)
Query: 86 NSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMF 145
N F+ CA+ G H +K G D + N+L+++YG G + A +F
Sbjct: 2 NISHFLHQLQLCARRQSASAAGELHSQIIKAGFDKSSLLSNTLLDVYGKCGLIPQALQLF 61
Query: 146 VQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLK 205
+M RD +SW SI++ H ++ ++P R + N M +
Sbjct: 62 DEMPNRDHVSWASILTAHNKA-----------LIPRRTLSMLNTMFT------------- 97
Query: 206 LFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYS 265
G + + A ++ AC G+ VH + + + ++ ++LID+Y+
Sbjct: 98 ------HDGLQPDHFVFACIVRACSSLGYLRLGKQVHARFMLSFFCDDEVVKSSLIDMYT 151
Query: 266 KCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLF-----------TALVNG 314
KC + + A+ VFDS+ +N V W +MI G+ G+ E + LF TAL++G
Sbjct: 152 KCGQPDDARAVFDSILFKNSVSWTSMISGYARSGRKCEAMDLFLQAPVRNLFSWTALISG 211
Query: 315 TVAGG----SIS------------PDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIK 358
+ G S S D + V+ C LL G++ +I
Sbjct: 212 LIQSGHGIYSFSLFNEMRREGIDIVDPLVLSSVVGGCANLALLELGKQIHGLVIALGFES 271
Query: 359 PNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIM 400
F + ++YA A++I +MP D +S+ SI+
Sbjct: 272 CLFISN-ALVDMYAKCSDILAAKDIFYRMPR-KDVISWTSII 311
>gi|255551961|ref|XP_002517025.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223543660|gb|EEF45188.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 640
Score = 244 bits (623), Expect = 7e-62, Method: Compositional matrix adjust.
Identities = 124/354 (35%), Positives = 205/354 (57%), Gaps = 13/354 (3%)
Query: 136 GAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYS 195
G MD A+ F +M R++ SW I+ G+++ GD+ AA +FD MPE+N+V+W+ MI GY+
Sbjct: 275 GEMDAAKEFFDRMQERNVASWVMIIDGYIKVGDVDAARSVFDQMPEKNLVAWSTMIGGYA 334
Query: 196 KSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNII 255
K+G+P SLKL++ + G + ++ +++AC + + SV V SL PN+
Sbjct: 335 KTGHPYSSLKLYKTFKEQGIKPDETFALGIISACSQLGVPDTAESVICDFVGPSLFPNLQ 394
Query: 256 LDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGT 315
+ T+LID+Y+KC +E A +VF+ + ++L C++ +I HG E+ I LF+ +
Sbjct: 395 VVTSLIDMYAKCGNIERAVQVFEMVDQKDLHCYSTVITAFANHGLSEDAISLFSEM---- 450
Query: 316 VAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAE 375
+I PD + F+GV+ AC L+ EGR+ FRQMID Y I+P+ HY CM ++ A
Sbjct: 451 -QKANIKPDGVAFLGVLTACNHGGLVGEGRRLFRQMIDEYGIQPSEKHYACMVDILGRAG 509
Query: 376 LTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRY 435
EEA ++ MP ++ + +W +LLS CR V + E A ++P + Y
Sbjct: 510 CLEEAHSLICSMP-----VAPNATVWGALLSACRVHLNVQLAEAAATELFQIEPNNSGNY 564
Query: 436 QFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLKEVVEKLKVG---HF 486
L N+YA AGQW+D ++VR ++++ R+ + G ++L V+ + +G HF
Sbjct: 565 VLLFNIYADAGQWDDFSKVRAMIRENRVRKNRGSSWIELGSVIHEFVMGDKSHF 618
Score = 172 bits (435), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 132/507 (26%), Positives = 227/507 (44%), Gaps = 66/507 (13%)
Query: 1 MKQLLQIQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIK 60
+K L I AHL+ SG ++ LL+ + FG+ Y +F P +F A+I
Sbjct: 16 LKTLTTIHAHLLISGSIASSDLTLNKLLRLYSKFGAVSYAHKLFDETPEPNSFLWTALIH 75
Query: 61 AYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDF 120
++ + + F+++M + +P ++T S+ + ++ G ++ G + +GLA++ G +F
Sbjct: 76 GFTENNQYENAFAFFIKMHRENIVPLNFTIASVLKAVSRLGRIKDGDLVYGLAVRCGYEF 135
Query: 121 ELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMP 180
+L V N +I ++ G M AR MF +M RD +SWNS+++G+ +G + A +LFD M
Sbjct: 136 DLVVKNVMIELFMRCGEMGSARQMFDEMEERDAVSWNSMITGYGNNGRVDIARKLFDRME 195
Query: 181 ERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGR--SAR-FNE 237
ERNV+SW MI GY K+G+ + LF M + + K M S + G +AR E
Sbjct: 196 ERNVISWTSMIQGYVKAGDLLEARVLFERMPEKDL-ASWKVMVSAYMSVGNLVAARNLFE 254
Query: 238 GRSVHGYTVRTSL---------------------KPNIILDTALIDLYSKCQKVEVAQRV 276
+H + + N+ +ID Y K V+ A+ V
Sbjct: 255 LMPIHDVGTWNLMISGCCKAGEMDAAKEFFDRMQERNVASWVMIIDGYIKVGDVDAARSV 314
Query: 277 FDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACV 336
FD M ++NLV W+ MI G+ G P +KL+ T I PDE +G+I AC
Sbjct: 315 FDQMPEKNLVAWSTMIGGYAKTGHPYSSLKLYK-----TFKEQGIKPDETFALGIISACS 369
Query: 337 RAEL---------------LTEGRKYFRQMIDFYKIKPNFAH---------------YWC 366
+ + L + +ID Y N Y
Sbjct: 370 QLGVPDTAESVICDFVGPSLFPNLQVVTSLIDMYAKCGNIERAVQVFEMVDQKDLHCYST 429
Query: 367 MANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVD 426
+ +A L+E+A + +M + N+ + + ++ +L+ C G V RL + +D
Sbjct: 430 VITAFANHGLSEDAISLFSEMQK--ANIKPDGVAFLGVLTACNHGGLVGEGRRLFRQMID 487
Query: 427 ---MDPQDFSRYQFLLNVYAVAGQWED 450
+ P + Y ++++ AG E+
Sbjct: 488 EYGIQPSE-KHYACMVDILGRAGCLEE 513
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 50/245 (20%), Positives = 102/245 (41%), Gaps = 8/245 (3%)
Query: 35 GSPDYTVLVFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLF 94
G D VF + + +I Y+ + P + Y + G P+ + +
Sbjct: 306 GDVDAARSVFDQMPEKNLVAWSTMIGGYAKTGHPYSSLKLYKTFKEQGIKPDETFALGII 365
Query: 95 GSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLI 154
+C++ G + + + L V+ SLI+MY G ++ A +F + +DL
Sbjct: 366 SACSQLGVPDTAESVICDFVGPSLFPNLQVVTSLIDMYAKCGNIERAVQVFEMVDQKDLH 425
Query: 155 SWNSIVSGHVRSGDMSAAHELFDIMPERNV----VSWNIMISGYSKSGNPGCSLKLFREM 210
++++++ G A LF M + N+ V++ +++ + G G +LFR+M
Sbjct: 426 CYSTVITAFANHGLSEDAISLFSEMQKANIKPDGVAFLGVLTACNHGGLVGEGRRLFRQM 485
Query: 211 MKS-GFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQK 269
+ G + ++K A ++ GR+ E H + PN + AL+
Sbjct: 486 IDEYGIQPSEKHYACMVDILGRAGCLEEA---HSLICSMPVAPNATVWGALLSACRVHLN 542
Query: 270 VEVAQ 274
V++A+
Sbjct: 543 VQLAE 547
>gi|15220333|ref|NP_171976.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75192500|sp|Q9MAT2.1|PPR10_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g04840
gi|7211995|gb|AAF40466.1|AC004809_24 F13M7.17 [Arabidopsis thaliana]
gi|332189629|gb|AEE27750.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 665
Score = 244 bits (623), Expect = 8e-62, Method: Compositional matrix adjust.
Identities = 143/518 (27%), Positives = 256/518 (49%), Gaps = 47/518 (9%)
Query: 4 LLQIQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAYS 63
L + A ++ G+ +S L+ S+ SPDY++ +F+ F +NA+I+ +
Sbjct: 45 LRHVHAQILRRGVL--SSRVAAQLVSCSSLLKSPDYSLSIFRNSEERNPFVLNALIRGLT 102
Query: 64 NSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELP 123
+ + V ++ M++ G P+ TF + S +K G G H LKN VD +
Sbjct: 103 ENARFESSVRHFILMLRLGVKPDRLTFPFVLKSNSKLGFRWLGRALHAATLKNFVDCDSF 162
Query: 124 VMNSLINMYGCFGA-----------------------------------MDCARNMFVQM 148
V SL++MY G M A +F M
Sbjct: 163 VRLSLVDMYAKTGQLKHAFQVFEESPDRIKKESILIWNVLINGYCRAKDMHMATTLFRSM 222
Query: 149 SPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFR 208
R+ SW++++ G+V SG+++ A +LF++MPE+NVVSW +I+G+S++G+ ++ +
Sbjct: 223 PERNSGSWSTLIKGYVDSGELNRAKQLFELMPEKNVVSWTTLINGFSQTGDYETAISTYF 282
Query: 209 EMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQ 268
EM++ G + N+ T+A+VL+AC +S G +HGY + +K + + TAL+D+Y+KC
Sbjct: 283 EMLEKGLKPNEYTIAAVLSACSKSGALGSGIRIHGYILDNGIKLDRAIGTALVDMYAKCG 342
Query: 269 KVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITF 328
+++ A VF +M ++++ W AMI G +HG+ + I+ F ++ PDE+ F
Sbjct: 343 ELDCAATVFSNMNHKDILSWTAMIQGWAVHGRFHQAIQCFRQMMY-----SGEKPDEVVF 397
Query: 329 IGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMP 388
+ V+ AC+ + + G +F M Y I+P HY + +L A EA E++ MP
Sbjct: 398 LAVLTACLNSSEVDLGLNFFDSMRLDYAIEPTLKHYVLVVDLLGRAGKLNEAHELVENMP 457
Query: 389 EDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQW 448
+ D + W +L C+ E ++++ +++DP+ Y FL +A G
Sbjct: 458 INPDLTT-----WAALYRACKAHKGYRRAESVSQNLLELDPELCGSYIFLDKTHASKGNI 512
Query: 449 EDVARVRELMKKRRMGRMPGCRLVDLKEVVEKLKVGHF 486
+DV + R ++KR R G ++L + K G +
Sbjct: 513 QDVEKRRLSLQKRIKERSLGWSYIELDGQLNKFSAGDY 550
>gi|356534289|ref|XP_003535689.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g43790-like [Glycine max]
Length = 591
Score = 244 bits (623), Expect = 8e-62, Method: Compositional matrix adjust.
Identities = 155/505 (30%), Positives = 259/505 (51%), Gaps = 37/505 (7%)
Query: 1 MKQLLQIQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIK 60
+ L Q+ A ++T+GL F +++ +LL S+ F S Y +F I NP F N +I
Sbjct: 18 LNTLKQVHAQMLTTGLSFQ-TYYLSHLLNTSSKFAS-TYAFTIFNHIPNPTLFLYNTLIS 75
Query: 61 AYSNSCVPDQ-GVVFYLQ---MIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKN 116
+ ++ DQ + F L + PNS+TF SLF +CA ++ G H LK
Sbjct: 76 SLTHHS--DQIHLAFSLYNHILTHKTLQPNSFTFPSLFKACASHPWLQHGPPLHAHVLKF 133
Query: 117 -GVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHEL 175
++ V NSL+N Y +G + +R +F Q+S DL +WN++++ + + SA+H
Sbjct: 134 LQPPYDPFVQNSLLNFYAKYGKLCVSRYLFDQISEPDLATWNTMLAAYAQ----SASH-- 187
Query: 176 FDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARF 235
VS++ + + + +L LF +M S + N+ T+ ++++AC
Sbjct: 188 ---------VSYS---TSFEDADMSLEALHLFCDMQLSQIKPNEVTLVALISACSNLGAL 235
Query: 236 NEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGH 295
++G HGY +R +LK N + TAL+D+YSKC + +A ++FD ++DR+ C+NAMI G
Sbjct: 236 SQGAWAHGYVLRNNLKLNRFVGTALVDMYSKCGCLNLACQLFDELSDRDTFCYNAMIGGF 295
Query: 296 CIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFY 355
+HG + ++L+ + + PD T + + AC L+ EG + F M +
Sbjct: 296 AVHGHGNQALELYR-----NMKLEDLVPDGATIVVTMFACSHGGLVEEGLEIFESMKGVH 350
Query: 356 KIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVA 415
++P HY C+ +L A +EAEE L+ MP M +I+W SLL + G +
Sbjct: 351 GMEPKLEHYGCLIDLLGRAGRLKEAEERLQDMP-----MKPNAILWRSLLGAAKLHGNLE 405
Query: 416 MVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLK 475
M E K ++++P+ Y L N+YA G+W DV RVR LMK + ++PG LV++
Sbjct: 406 MGEAALKHLIELEPETSGNYVLLSNMYASIGRWNDVKRVRMLMKDHGVDKLPGFSLVEIN 465
Query: 476 EVVEKLKVGHFWRGGMKEEVNKMME 500
+ + G KE +K+ E
Sbjct: 466 GAMHEFLTGDKAHPFSKEIYSKIGE 490
>gi|449458231|ref|XP_004146851.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g17630-like [Cucumis sativus]
gi|449522932|ref|XP_004168479.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g17630-like [Cucumis sativus]
Length = 705
Score = 244 bits (623), Expect = 8e-62, Method: Compositional matrix adjust.
Identities = 137/460 (29%), Positives = 239/460 (51%), Gaps = 21/460 (4%)
Query: 49 NPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGM 108
NP T+ +++ +++ ++ +V + +M G P + + CA + G M
Sbjct: 239 NPVTW--TSLLSSHARCGHLEETMVLFCKMRMKGVGPTAEMLAVVLSVCADLATLNSGQM 296
Query: 109 CHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGD 168
HG +K G + L N+LI +YG G + A +F +M ++L+SWN+++S SG
Sbjct: 297 IHGYMVKGGFNDYLFAKNALITLYGKGGGVGDAEKLFHEMKVKNLVSWNALISSFAESGV 356
Query: 169 MSAAHELF------DIMPER--NVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDK 220
A EL + PE NV++W+ +I G++ G SL++FR+M + + N
Sbjct: 357 YDKALELLSQLEKMEAYPEMKPNVITWSAIICGFASKGLGEESLEVFRKMQLANVKANSV 416
Query: 221 TMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSM 280
T+ASVL+ C A N GR +HG+ +R + N+++ LI++Y+KC + VF+ +
Sbjct: 417 TIASVLSICAMLAALNLGREMHGHVIRARMDDNVLVGNGLINMYTKCGSFKPGFMVFEKL 476
Query: 281 ADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAEL 340
+R+ + WN+MI G+ HG ++ + F ++ PD +TFI + AC A L
Sbjct: 477 ENRDSISWNSMIAGYGTHGLGKDALATFNHMIK-----SGYRPDGVTFIAALSACSHAGL 531
Query: 341 LTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIM 400
+ EG F QM +KI+P HY CM +L A L EEA I++ MP M + +
Sbjct: 532 VAEGHWLFSQMRQNFKIEPEIEHYACMVDLLGRAGLVEEASNIIKGMP-----MEPNAYI 586
Query: 401 WVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKK 460
W SLL+ CR + E A +++ + + L N++A + +WED ARVR +
Sbjct: 587 WSSLLNSCRMHKDTDLAEEAAAKISNLNSKITGSHMLLSNIFAASCRWEDSARVRISARA 646
Query: 461 RRMGRMPGCRLVDLKEVVEKLKVGHFWRGGMKEEVNKMME 500
+ + ++PG +++K+ V K G+ G+ E+V++++
Sbjct: 647 KGLKKVPGWSWIEVKKKVYMFKAGYTISEGL-EKVDEILH 685
Score = 134 bits (338), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 92/314 (29%), Positives = 153/314 (48%), Gaps = 11/314 (3%)
Query: 44 FKCINNPGTFCVNAVIKA--YSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTG 101
F+C +N N++I+A Y C+ + + Y +M G + + +TF L + + G
Sbjct: 98 FECYSN--FLLWNSIIRANVYHGYCI--EALQLYGKMRNYGVLGDGFTFPLLLRASSNLG 153
Query: 102 CVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVS 161
H ++ G L V N LI MY MD AR +F +M + ++SWN++VS
Sbjct: 154 AFNMCKNLHCHVVQFGFQNHLHVGNELIGMYAKLERMDDARKVFDKMRIKSVVSWNTMVS 213
Query: 162 GHVRSGDMSAAHELFDIMP----ERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRG 217
G+ + D++ A +F M E N V+W ++S +++ G+ ++ LF +M G
Sbjct: 214 GYAYNYDVNGASRMFHQMELEGVEPNPVTWTSLLSSHARCGHLEETMVLFCKMRMKGVGP 273
Query: 218 NDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVF 277
+ +A VL+ C A N G+ +HGY V+ + ALI LY K V A+++F
Sbjct: 274 TAEMLAVVLSVCADLATLNSGQMIHGYMVKGGFNDYLFAKNALITLYGKGGGVGDAEKLF 333
Query: 278 DSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVR 337
M +NLV WNA+I G ++ ++L + L A + P+ IT+ +IC
Sbjct: 334 HEMKVKNLVSWNALISSFAESGVYDKALELLSQL-EKMEAYPEMKPNVITWSAIICGFAS 392
Query: 338 AELLTEGRKYFRQM 351
L E + FR+M
Sbjct: 393 KGLGEESLEVFRKM 406
Score = 45.1 bits (105), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 33/143 (23%), Positives = 65/143 (45%), Gaps = 4/143 (2%)
Query: 35 GSPDYTVLVFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLF 94
GS +VF+ + N + N++I Y + + + MIK+G+ P+ TF++
Sbjct: 464 GSFKPGFMVFEKLENRDSISWNSMIAGYGTHGLGKDALATFNHMIKSGYRPDGVTFIAAL 523
Query: 95 GSCAKTGCVERGGMCHGLALKN-GVDFELPVMNSLINMYGCFGAMDCARNMF--VQMSPR 151
+C+ G V G +N ++ E+ ++++ G G ++ A N+ + M P
Sbjct: 524 SACSHAGLVAEGHWLFSQMRQNFKIEPEIEHYACMVDLLGRAGLVEEASNIIKGMPMEPN 583
Query: 152 DLISWNSIVSGHVRSGDMSAAHE 174
I W+S+++ D A E
Sbjct: 584 AYI-WSSLLNSCRMHKDTDLAEE 605
Score = 39.7 bits (91), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 52/238 (21%), Positives = 101/238 (42%), Gaps = 32/238 (13%)
Query: 239 RSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADR---NLVCWNAMILGH 295
+ VH TV T + + L+ +YS+ V A++VF S N + WN++I +
Sbjct: 55 KQVHSATVVTGAYCSAFVSARLVSIYSRYGLVSDARKVFGSAPFECYSNFLLWNSIIRAN 114
Query: 296 CIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFY 355
HG E ++L+ + N V G D TF ++ A + ++ F
Sbjct: 115 VYHGYCIEALQLYGKMRNYGVLG-----DGFTFPLLLRASSNLGAFNMCKNLHCHVVQF- 168
Query: 356 KIKPNFAHYWCMAN----LYAGAELTEEAEEILRKMPEDNDNMSFESIM-WVSLLSLCRF 410
F ++ + N +YA E ++A ++ D M +S++ W +++S +
Sbjct: 169 ----GFQNHLHVGNELIGMYAKLERMDDARKVF-------DKMRIKSVVSWNTMVSGYAY 217
Query: 411 ----QGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMG 464
GA M ++ V+ +P ++ LL+ +A G E+ + M+ + +G
Sbjct: 218 NYDVNGASRMFHQMELEGVEPNPVTWTS---LLSSHARCGHLEETMVLFCKMRMKGVG 272
>gi|359493640|ref|XP_002282675.2| PREDICTED: pentatricopeptide repeat-containing protein
At1g06145-like [Vitis vinifera]
Length = 464
Score = 244 bits (623), Expect = 8e-62, Method: Compositional matrix adjust.
Identities = 136/436 (31%), Positives = 221/436 (50%), Gaps = 42/436 (9%)
Query: 78 MIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGA 137
M++ P S+TF SL +C+ + G HG K G D + V +L++ YG G
Sbjct: 1 MVQAQVSPTSFTFSSLVKACSLVSELGFGEAVHGHIWKYGFDSHVFVQTALVDFYGNAGK 60
Query: 138 MDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKS 197
+ AR +F +MS RD+ +W +++S H R+GDMS+A +LFD MP RN SWN MI GYS+
Sbjct: 61 IVEARRVFDEMSERDVFAWTTMISVHARTGDMSSARQLFDEMPVRNTASWNAMIDGYSRL 120
Query: 198 GNP----------------------GC---------SLKLFREMMKSGFRGNDKTMASVL 226
N C +L +F EM +G ++ TMA+++
Sbjct: 121 RNVESAELLFSQMPNRDIISWTTMIACYSQNKQFREALAVFNEMQTNGIDPDEVTMATII 180
Query: 227 TACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLV 286
+AC + G+ +H Y + ++ + +ALID+Y+KC ++ + VF + +NL
Sbjct: 181 SACAHLGALDLGKEIHLYAMEMGFDLDVYIGSALIDMYAKCGSLDKSLVVFFKLRKKNLF 240
Query: 287 CWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRK 346
CWN++I G +HG EE + +F+ + I P+ +TFI V+ AC A L+ EGRK
Sbjct: 241 CWNSIIEGLAVHGYAEEALAMFSRMQR-----EKIKPNGVTFISVLGACTHAGLVEEGRK 295
Query: 347 YFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLS 406
F M + I P HY CM +L A L E+A E++R M M S++W +LL
Sbjct: 296 RFLSMSRDFSIPPEIEHYGCMVDLLGKAGLLEDALELVRSM-----RMEPNSVIWGALLG 350
Query: 407 LCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRM 466
C+ + + + ++P + Y L+N+YA +W +VA +R MK+ + +
Sbjct: 351 GCKLHRNLKIAQVAVNESKVLEPNNSGYYTLLVNMYAEVNRWSEVANIRATMKELGVEKT 410
Query: 467 -PGCRLVDLKEVVEKL 481
PG +++ + +
Sbjct: 411 SPGSSWIEMDRKIHQF 426
Score = 85.9 bits (211), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 64/259 (24%), Positives = 113/259 (43%), Gaps = 33/259 (12%)
Query: 42 LVFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTG 101
L+F + N +I YS + + + + +M NG P+ T ++ +CA G
Sbjct: 128 LLFSQMPNRDIISWTTMIACYSQNKQFREALAVFNEMQTNGIDPDEVTMATIISACAHLG 187
Query: 102 CVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVS 161
++ G H A++ G D ++ + ++LI+MY G++D + +F ++ ++L WNSI+
Sbjct: 188 ALDLGKEIHLYAMEMGFDLDVYIGSALIDMYAKCGSLDKSLVVFFKLRKKNLFCWNSIIE 247
Query: 162 GHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKT 221
G + + GY++ +L +F M + + N T
Sbjct: 248 G--------------------------LAVHGYAEE-----ALAMFSRMQREKIKPNGVT 276
Query: 222 MASVLTACGRSARFNEGRSVHGYTVRT-SLKPNIILDTALIDLYSKCQKVEVAQRVFDSM 280
SVL AC + EGR R S+ P I ++DL K +E A + SM
Sbjct: 277 FISVLGACTHAGLVEEGRKRFLSMSRDFSIPPEIEHYGCMVDLLGKAGLLEDALELVRSM 336
Query: 281 -ADRNLVCWNAMILGHCIH 298
+ N V W A++ G +H
Sbjct: 337 RMEPNSVIWGALLGGCKLH 355
Score = 55.8 bits (133), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 39/147 (26%), Positives = 66/147 (44%), Gaps = 20/147 (13%)
Query: 27 LLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPN 86
L+ A GS D +++VF + FC N++I+ + ++ + + +M + PN
Sbjct: 214 LIDMYAKCGSLDKSLVVFFKLRKKNLFCWNSIIEGLAVHGYAEEALAMFSRMQREKIKPN 273
Query: 87 SYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCF----------- 135
TF+S+ G+C G VE G L DF +P I YGC
Sbjct: 274 GVTFISVLGACTHAGLVEEG---RKRFLSMSRDFSIP---PEIEHYGCMVDLLGKAGLLE 327
Query: 136 GAMDCARNMFVQMSPRDLISWNSIVSG 162
A++ R+M +M P +I W +++ G
Sbjct: 328 DALELVRSM--RMEPNSVI-WGALLGG 351
>gi|296088012|emb|CBI35295.3| unnamed protein product [Vitis vinifera]
Length = 645
Score = 244 bits (623), Expect = 8e-62, Method: Compositional matrix adjust.
Identities = 150/506 (29%), Positives = 242/506 (47%), Gaps = 48/506 (9%)
Query: 43 VFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGC 102
+F I NP N +I+AY+ + D + Y M+ G PN YT+ + +C+
Sbjct: 65 LFDEIPNPSVILWNQIIRAYAWNGPFDGAIDLYHSMLHLGVRPNKYTYPFVLKACSGLLA 124
Query: 103 VERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSG 162
+E G H A G++ ++ V +L++ Y G + A+ +F MS RD+++WN++++G
Sbjct: 125 IEDGVEIHSHAKMFGLESDVFVCTALVDFYAKCGILVEAQRLFSSMSHRDVVAWNAMIAG 184
Query: 163 HVRSGD--------------------------------MSAAHELFDIMPERNVVSWNIM 190
G + A ++FD+M RN VSW+ M
Sbjct: 185 CSLYGLCDDAVQLIMQMQEEGICPNSSTIVGVLPTCQCLLYARKIFDVMGVRNEVSWSAM 244
Query: 191 ISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSL 250
I GY S +L +FR M SG + TM VL AC A G HGY +
Sbjct: 245 IGGYVASDCMKEALDIFRMMQLSGIDPDLTTMLGVLPACSHLAALQHGFCSHGYLIVRGF 304
Query: 251 KPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTA 310
+ ++ ALID+YSKC K+ A+ VF+ M ++V WNAMI+G+ IHG E + LF
Sbjct: 305 ATDTLICNALIDMYSKCGKISFAREVFNRMDRHDIVSWNAMIIGYGIHGLGMEALGLFHD 364
Query: 311 LVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANL 370
L+ + PD+ITFI ++ +C + L+ EGR +F M + I P H CM ++
Sbjct: 365 LL-----ALGLKPDDITFICLLSSCSHSGLVMEGRLWFDAMSRDFSIVPRMEHCICMVDI 419
Query: 371 YAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQ 430
A L +EA +R MP + D +W +LLS CR + + E ++K + P+
Sbjct: 420 LGRAGLIDEAHHFIRNMPFEPDVR-----IWSALLSACRIHKNIELGEEVSKKIQSLGPE 474
Query: 431 DFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLKEVVEKLKVGHFWRGG 490
+ L N+Y+ AG+W+D A +R K + ++PGC +++ +V H + GG
Sbjct: 475 STGNFVLLSNIYSAAGRWDDAAHIRITQKDWGLKKIPGCSWIEINGIV------HAFVGG 528
Query: 491 MKEEVNKMMECRQSRSLATVSKQLPW 516
+ + R+ L K+L +
Sbjct: 529 DQSHLQLSQINRKLEELLVEMKRLGY 554
Score = 105 bits (263), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 76/298 (25%), Positives = 133/298 (44%), Gaps = 44/298 (14%)
Query: 90 FVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMS 149
++ L +C ++ + H LKN + + V++ L +Y
Sbjct: 11 YLHLLEACIQSKSLTEAKKIHQHFLKNTSNADSSVLHKLTRLY----------------- 53
Query: 150 PRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFRE 209
+S N +V A LFD +P +V+ WN +I Y+ +G ++ L+
Sbjct: 54 ----LSCNQVV----------LARRLFDEIPNPSVILWNQIIRAYAWNGPFDGAIDLYHS 99
Query: 210 MMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQK 269
M+ G R N T VL AC +G +H + L+ ++ + TAL+D Y+KC
Sbjct: 100 MLHLGVRPNKYTYPFVLKACSGLLAIEDGVEIHSHAKMFGLESDVFVCTALVDFYAKCGI 159
Query: 270 VEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFI 329
+ AQR+F SM+ R++V WNAMI G ++G ++ ++L + I P+ T +
Sbjct: 160 LVEAQRLFSSMSHRDVVAWNAMIAGCSLYGLCDDAVQLIMQMQE-----EGICPNSSTIV 214
Query: 330 GVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKM 387
GV+ C + Y R++ D ++ N + M Y ++ +EA +I R M
Sbjct: 215 GVLPTC-------QCLLYARKIFDVMGVR-NEVSWSAMIGGYVASDCMKEALDIFRMM 264
>gi|297723179|ref|NP_001173953.1| Os04g0436350 [Oryza sativa Japonica Group]
gi|21740490|emb|CAD40814.1| OSJNBa0006B20.5 [Oryza sativa Japonica Group]
gi|125590470|gb|EAZ30820.1| hypothetical protein OsJ_14890 [Oryza sativa Japonica Group]
gi|218194889|gb|EEC77316.1| hypothetical protein OsI_15981 [Oryza sativa Indica Group]
gi|255675491|dbj|BAH92681.1| Os04g0436350 [Oryza sativa Japonica Group]
Length = 685
Score = 244 bits (623), Expect = 9e-62, Method: Compositional matrix adjust.
Identities = 141/480 (29%), Positives = 246/480 (51%), Gaps = 18/480 (3%)
Query: 6 QIQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSNS 65
Q+ A L+T ++ + L+ A P+ VF + N++I Y +
Sbjct: 168 QVHA-LVTKSSHGSDVYIGTALVDMYAKCERPEEAQKVFDAMPERNIVSWNSLITCYEQN 226
Query: 66 CVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVM 125
D+ + +++M+K+GF+P+ T S+ +CA G H +K+ E V+
Sbjct: 227 GPVDEALALFVRMMKDGFVPDEVTLASVMSACAGLAAGREGRQVHTRMVKSDRFREDMVL 286
Query: 126 N-SLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNV 184
N +L++MY G A+ +F +M+ R ++S S+++G+ +S ++ A +F M E+NV
Sbjct: 287 NNALVDMYAKCGRTWEAKCVFDRMAIRSVVSETSMITGYAKSANVGDAQAVFLQMVEKNV 346
Query: 185 VSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVH-- 242
V+WN++I+ Y+ + +L+LF + + T +VL AC A G+ H
Sbjct: 347 VAWNVLIATYAHNSEEEEALRLFVRLKRESVWPTHYTYGNVLNACANLANLQLGQQAHVH 406
Query: 243 ----GYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIH 298
G+ + + ++ + +L+D+Y K + +VF+ MA R+ V WNAMI+G+ +
Sbjct: 407 VLKEGFRFDSGPESDVFVGNSLVDMYLKTGSISDGAKVFERMAARDNVSWNAMIVGYAQN 466
Query: 299 GKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIK 358
G+ ++ + LF ++ + PD +T IGV+ AC + L+ EGR+YF+ M + + I
Sbjct: 467 GRAKDALLLFERML-----CSNERPDSVTMIGVLSACGHSGLVKEGRRYFQSMTEDHGII 521
Query: 359 PNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVE 418
P HY CM +L A +E EE++ MP M ++++W SLL CR + M E
Sbjct: 522 PTRDHYTCMIDLLGRAGHLKEVEELIENMP-----MEPDAVLWASLLGACRLHKNIDMGE 576
Query: 419 RLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLKEVV 478
A ++DP + Y L N+YA G+W DV RVR MK R + + PGC +++ V
Sbjct: 577 WAAGKLFELDPDNSGPYVLLSNMYAELGKWADVFRVRRSMKHRGVSKQPGCSWIEIGRKV 636
Score = 145 bits (365), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 94/341 (27%), Positives = 169/341 (49%), Gaps = 16/341 (4%)
Query: 121 ELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMP 180
E ++N+L++ Y G++ AR +F M R+ S+N+++S R G A LF +P
Sbjct: 49 ETFLLNTLLSAYARLGSLHDARRVFDGMPHRNTFSYNALLSACARLGRADDALALFGAIP 108
Query: 181 ERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRS 240
+ + S+N +++ ++ G G +L+ M F N + AS L+AC G
Sbjct: 109 DPDQCSYNAVVAALAQHGRGGDALRFLAAMHADDFVLNAYSFASALSACASEKASRTGEQ 168
Query: 241 VHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGK 300
VH ++S ++ + TAL+D+Y+KC++ E AQ+VFD+M +RN+V WN++I + +G
Sbjct: 169 VHALVTKSSHGSDVYIGTALVDMYAKCERPEEAQKVFDAMPERNIVSWNSLITCYEQNGP 228
Query: 301 PEEGIKLFTALV-NGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKP 359
+E + LF ++ +G V PDE+T V+ AC EGR+ +M+ + +
Sbjct: 229 VDEALALFVRMMKDGFV------PDEVTLASVMSACAGLAAGREGRQVHTRMVKSDRFRE 282
Query: 360 NFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVER 419
+ + ++YA T EA+ + D M+ S+ VS S+ A V
Sbjct: 283 DMVLNNALVDMYAKCGRTWEAKCVF-------DRMAIRSV--VSETSMITGYAKSANVGD 333
Query: 420 LAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKK 460
F+ M ++ + L+ YA + E+ R+ +K+
Sbjct: 334 AQAVFLQMVEKNVVAWNVLIATYAHNSEEEEALRLFVRLKR 374
Score = 128 bits (322), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 95/371 (25%), Positives = 158/371 (42%), Gaps = 68/371 (18%)
Query: 8 QAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSNSCV 67
A + G+ N+F LL A G D + +F I +P NAV+ A +
Sbjct: 68 DARRVFDGMPHRNTFSYNALLSACARLGRADDALALFGAIPDPDQCSYNAVVAALAQHGR 127
Query: 68 PDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNS 127
+ F M + F+ N+Y+F S +CA G H L K+ ++ + +
Sbjct: 128 GGDALRFLAAMHADDFVLNAYSFASALSACASEKASRTGEQVHALVTKSSHGSDVYIGTA 187
Query: 128 LINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSW 187
L++MY + A+ +F M R+++SWNS
Sbjct: 188 LVDMYAKCERPEEAQKVFDAMPERNIVSWNS----------------------------- 218
Query: 188 NIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVR 247
+I+ Y ++G +L LF MMK GF ++ T+ASV++AC A EGR VH V+
Sbjct: 219 --LITCYEQNGPVDEALALFVRMMKDGFVPDEVTLASVMSACAGLAAGREGRQVHTRMVK 276
Query: 248 TS-LKPNIILDTALIDLYSKCQKVEVAQRVFDSMA------------------------- 281
+ + +++L+ AL+D+Y+KC + A+ VFD MA
Sbjct: 277 SDRFREDMVLNNALVDMYAKCGRTWEAKCVFDRMAIRSVVSETSMITGYAKSANVGDAQA 336
Query: 282 ------DRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICAC 335
++N+V WN +I + + + EE ++LF L S+ P T+ V+ AC
Sbjct: 337 VFLQMVEKNVVAWNVLIATYAHNSEEEEALRLFVRLKR-----ESVWPTHYTYGNVLNAC 391
Query: 336 VRAELLTEGRK 346
L G++
Sbjct: 392 ANLANLQLGQQ 402
>gi|91806359|gb|ABE65907.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 555
Score = 244 bits (623), Expect = 9e-62, Method: Compositional matrix adjust.
Identities = 150/498 (30%), Positives = 239/498 (47%), Gaps = 77/498 (15%)
Query: 52 TFCVNAVIKAY-SNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCH 110
+F N++IKAY PD ++ + F P+++TF +L SC+ + CV +G H
Sbjct: 42 SFLSNSMIKAYLETRQYPDSFALYRDLRKETCFAPDNFTFTTLTKSCSLSMCVYQGLQLH 101
Query: 111 GLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGH------- 163
+ G ++ V +++MY FG M CARN F +M R +SW +++SG+
Sbjct: 102 SQIWRFGFCADMYVSTGVVDMYAKFGKMGCARNAFDEMPHRSEVSWTALISGYIRCGELD 161
Query: 164 -------------------------VRSGDMS---------------------------- 170
V+SGDM+
Sbjct: 162 LASKLFDQMPHVKDVVIYNAMMDGFVKSGDMTSARRLFDEMTHKTVITWTTMIHGYCNIK 221
Query: 171 ---AAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMM-KSGFRGNDKTMASVL 226
AA +LFD MPERN+VSWN MI GY ++ P + LF+EM + +D T+ SVL
Sbjct: 222 DIDAARKLFDAMPERNLVSWNTMIGGYCQNKQPQEGITLFQEMQATTSLDPDDVTILSVL 281
Query: 227 TACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLV 286
A + + G H + R L + + TA++D+YSKC ++E A+R+FD M ++ +
Sbjct: 282 PAISDTGALSLGEWCHCFVQRKKLDKKVKVCTAILDMYSKCGEIEKAKRIFDEMPEKQVA 341
Query: 287 CWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRK 346
WNAMI G+ ++G + LF ++ PDEIT + VI AC L+ EGRK
Sbjct: 342 SWNAMIHGYALNGNARAALDLFVTMMIEE------KPDEITMLAVITACNHGGLVEEGRK 395
Query: 347 YFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLS 406
+F M + + HY CM +L A +EAE+++ MP + + I+ S LS
Sbjct: 396 WFHVMREM-GLNAKIEHYGCMVDLLGRAGSLKEAEDLITNMPFEPN-----GIILSSFLS 449
Query: 407 LCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRM 466
C + ER+ K V+++PQ+ Y L N+YA +W+D V+ +M+K + +
Sbjct: 450 ACGQYKDIERAERILKKAVELEPQNDGNYVLLRNLYAADKRWDDFGMVKNVMRKNQAKKE 509
Query: 467 PGCRLVDLKEVVEKLKVG 484
GC L+++ +V + G
Sbjct: 510 VGCSLIEINYIVSEFISG 527
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 54/222 (24%), Positives = 100/222 (45%), Gaps = 15/222 (6%)
Query: 172 AHELFDIMPERN-VVSWNIMISGYSKSGNPGCSLKLFREMMKSG-FRGNDKTMASVLTAC 229
A +LFD P+R+ N MI Y ++ S L+R++ K F ++ T ++ +C
Sbjct: 29 ARKLFDQRPQRDDSFLSNSMIKAYLETRQYPDSFALYRDLRKETCFAPDNFTFTTLTKSC 88
Query: 230 GRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWN 289
S +G +H R ++ + T ++D+Y+K K+ A+ FD M R+ V W
Sbjct: 89 SLSMCVYQGLQLHSQIWRFGFCADMYVSTGVVDMYAKFGKMGCARNAFDEMPHRSEVSWT 148
Query: 290 AMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFR 349
A+I G+ G+ + KLF + + D + + ++ V++ +T R+ F
Sbjct: 149 ALISGYIRCGELDLASKLFDQMPH--------VKDVVIYNAMMDGFVKSGDMTSARRLFD 200
Query: 350 QMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDN 391
+M I + M + Y + + A ++ MPE N
Sbjct: 201 EMTHKTVIT-----WTTMIHGYCNIKDIDAARKLFDAMPERN 237
>gi|330689867|gb|AEC33263.1| putative pentatricopeptide protein [Triticum aestivum]
Length = 644
Score = 244 bits (623), Expect = 9e-62, Method: Compositional matrix adjust.
Identities = 158/524 (30%), Positives = 252/524 (48%), Gaps = 57/524 (10%)
Query: 7 IQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCI-NNPGTFCVNAVIKAYSNS 65
I AH + GL + LL A G D VF + + T N +I AYS
Sbjct: 94 IHAHALHLGLHAHPDV-AGQLLAAYARHGRADEAHHVFDAMPSKRATMSWNTLISAYSVC 152
Query: 66 CVPDQGVVFYLQMIKNG-FMPNSYTFVSL----------------FGSCAKTGC------ 102
C P+ + + +M G +P++ T+ +L FG ++GC
Sbjct: 153 CDPNNAMATFARMAAAGEALPDAVTWTTLLSAHARCGKHPVVLELFGDMHRSGCEGNAES 212
Query: 103 ---------------VERGGMCHGLALKNGV-DFELPVMNSLINMYGCFGAMDCARNMFV 146
+ +G HG + GV L V NSL+ MYG G MD AR +F
Sbjct: 213 VAVALSACPYAGDLALAKGRAIHGYGVAKGVVRGYLFVTNSLVCMYGKLGKMDDAREVFR 272
Query: 147 QMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPER------NVVSWNIMISGYSKSGNP 200
+ R+ ++WN++++ + +G A + M +R NV+SW+ +I G++ SG+
Sbjct: 273 EAGERNTVTWNALITSYAAAGMCDEALNVLVRMEQRGGMVAPNVMSWSAVIGGFASSGDN 332
Query: 201 GCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTAL 260
+L+LFR M + N T+A+VL+AC GR VH +R+ + + ++ L
Sbjct: 333 ERALELFRRMQQQWLSPNVVTLATVLSACTEQLAVRLGREVHADAIRSMVDRHSLVANGL 392
Query: 261 IDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGS 320
I++Y+KC +V A+ VFD M R+LV WN+M+ G+ +HG ++ + +FT + A
Sbjct: 393 INMYAKCGRVADARTVFDGMKSRDLVSWNSMLAGYGMHGLCDDALAVFTDM-----AEAK 447
Query: 321 ISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEA 380
+ PD +TF+ V+ AC A ++EGR+ F QMI +KI P+ HY CM +L A L +EA
Sbjct: 448 VDPDGVTFVAVLSACSHAGRVSEGRRLFDQMILEHKISPSMEHYTCMVDLLGRAGLLKEA 507
Query: 381 EEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLN 440
E + MP M + +W +LL+ CR G AM E + + + N
Sbjct: 508 SEFIETMP-----MGADLCVWGALLNSCRIHGDAAMAEATIAKALQAGVVTTGNHTLITN 562
Query: 441 VYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLKEVVEKLKVG 484
+YA G W+D RVR + ++ + + PG V++K V G
Sbjct: 563 LYAACGMWDDSKRVRVMTREAGLRKNPGQSWVEVKNKVFAFMAG 606
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 38/163 (23%), Positives = 69/163 (42%), Gaps = 10/163 (6%)
Query: 177 DIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMK-SGFRGNDKTMASVLTACGRSARF 235
D+ P V WN ++ + P +L L+R M S N T+ L R+A
Sbjct: 33 DLPPTTCAVPWNRLLRAHICRSRPDLALALYRRMRALSPTLPNSYTLPLAL----RAATS 88
Query: 236 NEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSM-ADRNLVCWNAMILG 294
++H + + L + + L+ Y++ + + A VFD+M + R + WN +I
Sbjct: 89 PIASAIHAHALHLGLHAHPDVAGQLLAAYARHGRADEAHHVFDAMPSKRATMSWNTLISA 148
Query: 295 HCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVR 337
+ + P + F + A G PD +T+ ++ A R
Sbjct: 149 YSVCCDPNNAMATFARM----AAAGEALPDAVTWTTLLSAHAR 187
>gi|56201767|dbj|BAD73217.1| hypothetical protein [Oryza sativa Japonica Group]
gi|56201874|dbj|BAD73324.1| hypothetical protein [Oryza sativa Japonica Group]
gi|125569384|gb|EAZ10899.1| hypothetical protein OsJ_00742 [Oryza sativa Japonica Group]
Length = 569
Score = 244 bits (623), Expect = 9e-62, Method: Compositional matrix adjust.
Identities = 157/524 (29%), Positives = 257/524 (49%), Gaps = 58/524 (11%)
Query: 7 IQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPG--TFCVNAVIKAYSN 64
+ AH + GL + +L + G VF + PG TF NA+I AYS+
Sbjct: 30 VHAHALHLGLHAQHDV-AGQILAAYSRLGRAADARRVFDAMP-PGRTTFHWNALISAYSS 87
Query: 65 SCVPDQGVVFYLQMIKNGFMPNSYTFVSL----------------FGSCAKTGC------ 102
C PD + +M G P++ T+ +L FG ++GC
Sbjct: 88 GCDPDAARDAFARMAAAGARPDAVTWTALLSAHARSGKHADVLQLFGEMQRSGCEGNAES 147
Query: 103 ---------------VERGGMCHGLALKNGV-DFELPVMNSLINMYGCFGAMDCARNMFV 146
+ +G HG + G+ L V NSLI MYG G MD A+ F
Sbjct: 148 MAVALSACPYAGDLALAKGKAIHGCGVVKGLMHGYLFVTNSLICMYGKLGEMDDAKKAFR 207
Query: 147 QMSPRDLISWNSIVSGHV------RSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNP 200
+ ++ ++WN++++ + ++ D+ A E NVVSW+ +I G++ SG+
Sbjct: 208 DATAKNTVTWNTLITSYAAARLCDKALDVLAQMEQIGGTVAPNVVSWSAVIGGFASSGDT 267
Query: 201 GCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTAL 260
+L+LFR M + N TMA+VL+AC GR +HG+ ++ L + +++ L
Sbjct: 268 DRALELFRRMQQQWLSPNVVTMATVLSACVDLLALRLGRELHGHAMKAELDRHSLVENGL 327
Query: 261 IDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGS 320
I++Y+KC KV A++VFD M R+L+ WN+M+ G+ +HG +E + LFT +AG +
Sbjct: 328 INMYAKCGKVSGARKVFDGMKTRDLISWNSMLAGYGMHGLCDEALALFT-----DMAGAT 382
Query: 321 ISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEA 380
+ PD +TF+ V+ AC A +TEGR+ F +M+ +KI P+ HY CM L A L +A
Sbjct: 383 VEPDGVTFVAVLSACGHAGRVTEGRRLFDRMVRAHKISPSMEHYTCMVYLLGRAGLLRDA 442
Query: 381 EEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLN 440
E++ MP D +W +LL+ CR G AM E + + + Q + + N
Sbjct: 443 SELVETMPVRPD-----LCVWGALLNSCRIHGDAAMAEATIANVLQSEDQSTGNHMLITN 497
Query: 441 VYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLKEVVEKLKVG 484
+YA+ G W++ +VR + K+ + + PG +++ V G
Sbjct: 498 LYAMCGMWDESKKVRVMTKEAGLRKNPGQSWIEVDNKVVAFAAG 541
>gi|414873430|tpg|DAA51987.1| TPA: hypothetical protein ZEAMMB73_709752 [Zea mays]
Length = 536
Score = 244 bits (623), Expect = 9e-62, Method: Compositional matrix adjust.
Identities = 146/494 (29%), Positives = 238/494 (48%), Gaps = 24/494 (4%)
Query: 6 QIQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSNS 65
+I L GL + LL A G P + +F + +PG A+ +A++ S
Sbjct: 32 EIHGLLFKEGLLHAGAHLPTALLSAYAALGRPRHARDLFDEMPDPGLVSRTAMARAHAAS 91
Query: 66 CVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMC---------HGLALKN 116
Q + + MI +G +P++ +C T + GM H + + +
Sbjct: 92 GQAAQALAVFRDMIADGVLPDNVALAVALAACHTTASLPAAGMAAARRPGKMVHAIIVTS 151
Query: 117 GVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELF 176
G+ ++ V LI +YG +G + +R +F M R +SWN++V ++R ++ A+ELF
Sbjct: 152 GIVPDVFVSTELIRVYGEYGELALSRRLFDAMPVRSTVSWNAMVHQYIRHSNVGDAYELF 211
Query: 177 DIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSG---FRGNDKTMASVLTACGRSA 233
MP R+VVSWN MI+GYS G +L+L R+M+ N TM++VL AC +
Sbjct: 212 LAMPRRDVVSWNTMIAGYSLVGRFMEALELSRQMISPSSCPVYPNGPTMSTVLAACAGAG 271
Query: 234 RFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMAD-RNLVCWNAMI 292
G VH + R + + LD +LID+Y KC +E A +VF+ + R+L W MI
Sbjct: 272 CLETGIWVHAFVDRNRMNDDGSLDRSLIDMYVKCGSIEKALQVFEKAPEARDLYSWTTMI 331
Query: 293 LGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMI 352
G +HG+ + +K+F G + I PD++T +GV+ AC L+ EG ++F +
Sbjct: 332 CGLAMHGRAADALKMF-----GMMQDNGIHPDDVTLVGVLNACAHCGLVDEGLRHFYSL- 385
Query: 353 DFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQG 412
+ Y I P HY C+ +L +EA I+R M M +++W + L+ C+
Sbjct: 386 EKYAITPKIEHYGCVIDLLGRVGRLQEAYNIIRTM-----RMKPNAVIWGAFLNACKVHS 440
Query: 413 AVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLV 472
V + E A +DP D L ++YA W +AR R M ++ + PGC +
Sbjct: 441 NVELGEIAAAELTRLDPGDPWAKVMLSSLYAKLQDWNSLARERREMNNLQIKKTPGCSSI 500
Query: 473 DLKEVVEKLKVGHF 486
+L V + G F
Sbjct: 501 ELDGEVHEFVAGGF 514
>gi|224055823|ref|XP_002298671.1| predicted protein [Populus trichocarpa]
gi|222845929|gb|EEE83476.1| predicted protein [Populus trichocarpa]
Length = 609
Score = 244 bits (622), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 140/449 (31%), Positives = 243/449 (54%), Gaps = 19/449 (4%)
Query: 57 AVIKAYSNSCVPDQGV-VFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHG-LAL 114
+++ AY+ + +P++ + +F+ + P+ + + +L +CA + G H L
Sbjct: 73 SILTAYNQAKLPNKTLSIFHYMFTTDRLQPDHFVYATLLKACASLCSLRLGKQVHARFVL 132
Query: 115 KNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHE 174
VD ++ V +SL++MY G AR++F + + +SW +++SG+ RSG A E
Sbjct: 133 SPFVDDDV-VKSSLVDMYAKCGLPSIARSVFDSILVKTSVSWTAMLSGYARSGLKDEAME 191
Query: 175 LFDIMPERNVVSWNIMISGYSKSGN--PGCSLKLFREMMKSGFRGNDK-TMASVLTACGR 231
LF P RN+ SW +ISG +SG GC + F EM + G D ++SV+ AC
Sbjct: 192 LFLRTPVRNLYSWTALISGLVQSGYCIDGCYM--FIEMRREGVDIVDPLVLSSVVGACAN 249
Query: 232 SARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAM 291
A G+ +HG + + + + + AL+D+Y+KC + A+ VF+ M R++V W ++
Sbjct: 250 LAVLGLGKQIHGLVIGSGYESCLFISNALVDMYAKCSDILAARNVFNRMLHRDVVSWTSI 309
Query: 292 ILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQM 351
I+G HG+ +E + L+ +V I P+E+TF+G+I AC A L+++GRK F+ M
Sbjct: 310 IVGAAQHGRAKEALDLYDQMVL-----AEIKPNEVTFVGLIYACSHAGLVSKGRKLFKAM 364
Query: 352 IDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQ 411
I+ Y+I P+ + C +L + + EAE++++ MP D + W +LLS C+
Sbjct: 365 IEDYRISPSLQLFTCFLDLLSRSGHLNEAEDLIKTMPHKPDEPT-----WAALLSACKHH 419
Query: 412 GAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRL 471
G M R+A + ++ + S Y L NVYA AG+WE ++RVR+LM + R PG
Sbjct: 420 GNTEMGVRIADRLLSLNMHEPSTYVLLSNVYAGAGKWEQMSRVRKLMTDMEVKRKPGYSS 479
Query: 472 VDLKEVVEKLKVGHFWRGGMKEEVNKMME 500
+DL + + G MK+E+ +++
Sbjct: 480 IDLGKESQVFHAGETCH-PMKDEIFGLLK 507
Score = 92.4 bits (228), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 51/175 (29%), Positives = 91/175 (52%), Gaps = 12/175 (6%)
Query: 157 NSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFR 216
N+++ + + + AH LFD MP+R+ VSW +++ Y+++ P +L +F M +
Sbjct: 41 NTLLDAYGKCNLLQDAHYLFDEMPQRDHVSWASILTAYNQAKLPNKTLSIFHYMFTTDRL 100
Query: 217 GNDK-TMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQR 275
D A++L AC G+ VH V + + ++ ++L+D+Y+KC +A+
Sbjct: 101 QPDHFVYATLLKACASLCSLRLGKQVHARFVLSPFVDDDVVKSSLVDMYAKCGLPSIARS 160
Query: 276 VFDSMADRNLVCWNAMILGHCIHGKPEEGIKLF-----------TALVNGTVAGG 319
VFDS+ + V W AM+ G+ G +E ++LF TAL++G V G
Sbjct: 161 VFDSILVKTSVSWTAMLSGYARSGLKDEAMELFLRTPVRNLYSWTALISGLVQSG 215
Score = 44.7 bits (104), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 26/127 (20%), Positives = 52/127 (40%), Gaps = 4/127 (3%)
Query: 226 LTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNL 285
L C + + +H V++ L L L+D Y KC ++ A +FD M R+
Sbjct: 9 LKLCTKHQAPLNAKKIHAQIVKSGLNQCQPLPNTLLDAYGKCNLLQDAHYLFDEMPQRDH 68
Query: 286 VCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGR 345
V W +++ + P + + +F + + PD + ++ AC L G+
Sbjct: 69 VSWASILTAYNQAKLPNKTLSIFHYMFT----TDRLQPDHFVYATLLKACASLCSLRLGK 124
Query: 346 KYFRQMI 352
+ + +
Sbjct: 125 QVHARFV 131
>gi|302816499|ref|XP_002989928.1| hypothetical protein SELMODRAFT_130658 [Selaginella moellendorffii]
gi|300142239|gb|EFJ08941.1| hypothetical protein SELMODRAFT_130658 [Selaginella moellendorffii]
Length = 818
Score = 244 bits (622), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 129/484 (26%), Positives = 248/484 (51%), Gaps = 17/484 (3%)
Query: 6 QIQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSNS 65
+I A ++ +G F ++ L+ GS VF + N +I Y +
Sbjct: 228 KIHAEIVANG-FDSDLVVATALINMYGKCGSSHEAREVFDKMKKRDMVSWNVMIGCYVQN 286
Query: 66 CVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVM 125
+ + Y ++ GF TFVS+ G+C+ + +G + H L+ G+D E+ V
Sbjct: 287 GDFHEALELYQKLDMEGFKRTKATFVSILGACSSVKALAQGRLVHSHILERGLDSEVAVA 346
Query: 126 NSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSG---DMSAAHELFDIMPER 182
+L+NMY G+++ AR +F M RD ++W++++ + +G D A ++FD + R
Sbjct: 347 TALVNMYAKCGSLEEARKVFNAMKNRDAVAWSTLIGAYASNGYGKDARKARKVFDRLGSR 406
Query: 183 NVVSWNIMISGYSKSGNPGCSLKLFREMM-KSGFRGNDKTMASVLTACGRSARFNEGRSV 241
+ + WN MI+ Y ++G ++K+FREM +G + + T +VL AC R +E +++
Sbjct: 407 DTICWNAMITTYVQNGCAVAAMKIFREMTGAAGLKPDAVTFIAVLEACASLGRLSEVKAL 466
Query: 242 HGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKP 301
H + L+ N+++ LI++Y++C +E A+R+F + ++ +V W AM+ +G+
Sbjct: 467 HAQISESELESNVVVTNTLINMYARCGSLEEAERLFAAAKEKTVVSWTAMVAAFSQYGRY 526
Query: 302 EEGIKLFTAL-VNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPN 360
E + LF + + G + PD++T+ ++ C L +G +YF M + + + P
Sbjct: 527 AEALDLFQEMDLEG------VKPDDVTYTSILFVCTHGGSLEQGWRYFTDMAELHGLAPT 580
Query: 361 FAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERL 420
H+ M +L + +A+E+L MP + D + W++ L+ CR G + + E
Sbjct: 581 ADHFAAMVDLLGRSGRLFDAKELLESMPFEPD-----PVAWMTFLTACRIHGKLELGEAA 635
Query: 421 AKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLKEVVEK 480
A+ ++DP + Y + N+YA G WE VA VR+ M++R + ++PG +++ + +
Sbjct: 636 AERVYELDPSSTAPYIAMSNIYAAHGMWEKVASVRKKMEERGLKKLPGLSFIEVDGKLHE 695
Query: 481 LKVG 484
G
Sbjct: 696 FSSG 699
Score = 139 bits (351), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 139/537 (25%), Positives = 226/537 (42%), Gaps = 108/537 (20%)
Query: 1 MKQLLQIQAHLITSGLFFNNSFWTIN--LLKHSADFGSPDYTVLVFKCINNPGTFCVNAV 58
+ Q +I + SGL +SF ++ L+ A FGS +F+ + NAV
Sbjct: 123 LAQGREIHNRVFYSGL---DSFQSLANALVTMYARFGSVGDAKRMFQSLQTRDETSWNAV 179
Query: 59 IKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGV 118
I A+S S G + + +K PNS T++++ + + G H + NG
Sbjct: 180 ILAHSQSG-DWSGALRIFKEMKCDMKPNSTTYINVISGFSTPEVLPEGRKIHAEIVANGF 238
Query: 119 DFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDI 178
D +L V +LINMYG G+ AR +F +M RD++SWN ++ +V++GD HE
Sbjct: 239 DSDLVVATALINMYGKCGSSHEAREVFDKMKKRDMVSWNVMIGCYVQNGDF---HE---- 291
Query: 179 MPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEG 238
+L+L++++ GF+ T S+L AC +G
Sbjct: 292 ------------------------ALELYQKLDMEGFKRTKATFVSILGACSSVKALAQG 327
Query: 239 RSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLV------------ 286
R VH + + L + + TAL+++Y+KC +E A++VF++M +R+ V
Sbjct: 328 RLVHSHILERGLDSEVAVATALVNMYAKCGSLEEARKVFNAMKNRDAVAWSTLIGAYASN 387
Query: 287 ----------------------CWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPD 324
CWNAMI + +G +K+F + T A G + PD
Sbjct: 388 GYGKDARKARKVFDRLGSRDTICWNAMITTYVQNGCAVAAMKIFREM---TGAAG-LKPD 443
Query: 325 EITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEIL 384
+TFI V+ AC L+E + Q I +++ N + N+YA EEAE +
Sbjct: 444 AVTFIAVLEACASLGRLSEVKALHAQ-ISESELESNVVVTNTLINMYARCGSLEEAERLF 502
Query: 385 RKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMD-----PQDFSRYQFLL 439
E + W ++++ G A L F +MD P D + Y +L
Sbjct: 503 AAAKEKT------VVSWTAMVAAFSQYGRYAEALDL---FQEMDLEGVKPDDVT-YTSIL 552
Query: 440 NVYAVAGQWE-------DVARVRELMKKRR--------MGRMPGCRLVDLKEVVEKL 481
V G E D+A + L +GR RL D KE++E +
Sbjct: 553 FVCTHGGSLEQGWRYFTDMAELHGLAPTADHFAAMVDLLGR--SGRLFDAKELLESM 607
Score = 137 bits (344), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 98/392 (25%), Positives = 171/392 (43%), Gaps = 49/392 (12%)
Query: 56 NAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALK 115
NA+I AY+ + + +V Y +M G + TFVS+ G+C+ + +G H
Sbjct: 79 NAMIAAYAQNGHSTEALVLYWRMNLQGLGTDHVTFVSVLGACSS---LAQGREIHNRVFY 135
Query: 116 NGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHEL 175
+G+D + N+L+ MY FG++ A+ MF + RD SWN+++ H +SGD S A
Sbjct: 136 SGLDSFQSLANALVTMYARFGSVGDAKRMFQSLQTRDETSWNAVILAHSQSGDWSGA--- 192
Query: 176 FDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARF 235
L++F+E MK + N T +V++
Sbjct: 193 ----------------------------LRIFKE-MKCDMKPNSTTYINVISGFSTPEVL 223
Query: 236 NEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGH 295
EGR +H V ++++ TALI++Y KC A+ VFD M R++V WN MI +
Sbjct: 224 PEGRKIHAEIVANGFDSDLVVATALINMYGKCGSSHEAREVFDKMKKRDMVSWNVMIGCY 283
Query: 296 CIHGKPEEGIKLFTAL-VNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDF 354
+G E ++L+ L + G + TF+ ++ AC + L +GR +++
Sbjct: 284 VQNGDFHEALELYQKLDMEG------FKRTKATFVSILGACSSVKALAQGRLVHSHILE- 336
Query: 355 YKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAV 414
+ A + N+YA EEA ++ M + ++ W +L+ G
Sbjct: 337 RGLDSEVAVATALVNMYAKCGSLEEARKVFNAMKNRD------AVAWSTLIGAYASNGYG 390
Query: 415 AMVERLAKSFVDMDPQDFSRYQFLLNVYAVAG 446
+ K F + +D + ++ Y G
Sbjct: 391 KDARKARKVFDRLGSRDTICWNAMITTYVQNG 422
Score = 112 bits (279), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 104/409 (25%), Positives = 169/409 (41%), Gaps = 73/409 (17%)
Query: 85 PNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNM 144
P++ TF+++ SC+ G V G H + + + V N+LI+MYG ++ AR++
Sbjct: 5 PDNVTFLTVLCSCSSCGDVAEGRALHERIRCSRFERDTMVGNALISMYGKCDSLVDARSV 64
Query: 145 FVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSL 204
F M R +RNVVSWN MI+ Y+++G+ +L
Sbjct: 65 FESMDWR-----------------------------QRNVVSWNAMIAAYAQNGHSTEAL 95
Query: 205 KLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLY 264
L+ M G + T SVL AC A +GR +H + L L AL+ +Y
Sbjct: 96 VLYWRMNLQGLGTDHVTFVSVLGACSSLA---QGREIHNRVFYSGLDSFQSLANALVTMY 152
Query: 265 SKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPD 324
++ V A+R+F S+ R+ WNA+IL H G +++F + + P+
Sbjct: 153 ARFGSVGDAKRMFQSLQTRDETSWNAVILAHSQSGDWSGALRIFKEM------KCDMKPN 206
Query: 325 EITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEIL 384
T+I VI E+L EGRK +++ + + N+Y + EA E+
Sbjct: 207 STTYINVISGFSTPEVLPEGRKIHAEIVA-NGFDSDLVVATALINMYGKCGSSHEAREVF 265
Query: 385 RKMPE-----------------------------DNDNMSFESIMWVSLLSLCRFQGAVA 415
KM + D + +VS+L C A+A
Sbjct: 266 DKMKKRDMVSWNVMIGCYVQNGDFHEALELYQKLDMEGFKRTKATFVSILGACSSVKALA 325
Query: 416 MVERLAKSFV---DMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKR 461
RL S + +D + + L+N+YA G E+ +V MK R
Sbjct: 326 Q-GRLVHSHILERGLDSE-VAVATALVNMYAKCGSLEEARKVFNAMKNR 372
>gi|195611854|gb|ACG27757.1| pentatricopeptide repeat protein PPR868-14 [Zea mays]
Length = 633
Score = 244 bits (622), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 147/467 (31%), Positives = 241/467 (51%), Gaps = 24/467 (5%)
Query: 24 TINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMI--KN 81
L + A G D V + + +P + I A+S+ + + +M+ ++
Sbjct: 59 AFRLQRAYAASGRLDLAVALLRRTPDPTAVFYTSAIHAHSSRGLHRAALALLSEMLLSRH 118
Query: 82 GFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCA 141
G +P ++T + +C GC+ G HG A+K + E V +L+ MY G A
Sbjct: 119 GLLPTAHTLSASLPAC---GCLAVGRALHGYAVKLALSGEPYVATALLGMYARAGEAAAA 175
Query: 142 RNMFVQMSPR-DLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNP 200
R +F M P ++S +++S + + G + A LFD +P +++V WN M+ GY++ G P
Sbjct: 176 RALFDGMRPDPHVVSVTAMLSCYAKMGQLDDARGLFDALPRKDLVCWNAMMDGYTQHGRP 235
Query: 201 GCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTV----RTSLKPNIIL 256
+L+LFR+M++SG ++ ++ L+A + GR +H + R ++ N +
Sbjct: 236 SEALRLFRQMLRSGVEPDEVSVVLALSAVAQLGTAESGRWLHSFVANGGRRARVRLNARV 295
Query: 257 DTALIDLYSKCQKVEVAQRVFDSM---ADRNLVCWNAMILGHCIHGKPEEGIKLFTALVN 313
TAL+D+Y KC +E A VF + DR++V WNAMI G+ +HG+ E ++ F
Sbjct: 296 GTALVDMYYKCGSLEEAVAVFRDLGGGGDRDVVAWNAMINGYAMHGRSREALEAF----- 350
Query: 314 GTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAG 373
G + + P +ITFIGV+ AC + L+ EGR F M + Y I P HY CM +L
Sbjct: 351 GQLRAQGLWPTDITFIGVLNACSHSGLVDEGRALFAAMEEEYGIVPKVEHYGCMVDLLGR 410
Query: 374 AELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFS 433
A EEA ++++ M D + MW SLL CR +A+ +R+A V +
Sbjct: 411 AGRVEEAFDLVQSMKAKPD-----AAMWASLLGACRLHKNLALGQRVADYLVGNGLANSG 465
Query: 434 RYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDL-KEVVE 479
Y L N+YA AG+W +V RVR +M+ + + PGC V++ + VVE
Sbjct: 466 TYVLLSNMYAAAGKWREVGRVRSMMRASGVQKEPGCSAVEVGRRVVE 512
>gi|449486568|ref|XP_004157334.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At2g20540-like [Cucumis sativus]
Length = 532
Score = 244 bits (622), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 150/486 (30%), Positives = 242/486 (49%), Gaps = 10/486 (2%)
Query: 1 MKQLLQIQAHLITSGLFFNNSFWTINLLKHSADF--GSPDYTVLVFKCINNPGTFCVNAV 58
M QL Q A ++ SGL N++F LL A+ GS + +F+ I +P N +
Sbjct: 18 MNQLKQAHAQVLKSGLH-NSNFVLSRLLNFCAESRNGSLSHAFKLFQHIQHPTICIFNTM 76
Query: 59 IKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGV 118
IKA + + + +NG P++YT + + A+ + G H +K G
Sbjct: 77 IKALLLRGEFLNAIAVFSAIFRNGIHPDTYTLPYVLKASARMTNIHLGESIHACTIKLGS 136
Query: 119 DFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDI 178
V NSL+ MY F M AR +F +M +SW ++ G+ GD+ A ELFD+
Sbjct: 137 AVNEFVGNSLLVMYRSFDNMRSARQVFDEMPELSAVSWTVMIYGYANMGDVDTARELFDM 196
Query: 179 MPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEG 238
++ W MISGY ++ L +FR M + ++ + ++L+AC + G
Sbjct: 197 ATVKDTGIWGAMISGYVQNNCFKEGLHMFRLMQLTEVEPDEAIIVTILSACAHMGALDTG 256
Query: 239 RSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIH 298
+H Y R L + + T LID+Y+KC +++A+ +F+ M+ R+ VCWNAMI G +
Sbjct: 257 IWIHRYLGRLGLPLTLRVSTGLIDMYAKCGHLDLAKYLFNEMSQRDNVCWNAMISGMAMD 316
Query: 299 GKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIK 358
G E IKLF + I PD ITFI V AC + ++ EG + + +M +KI+
Sbjct: 317 GDGEGAIKLFMEM-----EKAGIKPDNITFIAVWXACSNSGMVDEGIRIWNRMSTVHKIE 371
Query: 359 PNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVE 418
P HY C+ +L + EEAE +++++P+ + S E++ W + LS C G E
Sbjct: 372 PKSEHYGCVIDLLSRVGRFEEAEGVIQRLPK-TASPSEEAVAWRAFLSACCKHGQTQQAE 430
Query: 419 RLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLKEVV 478
A+ ++ Y L N+YA G+ ED RVR +MK + + ++PGC + + VV
Sbjct: 431 VAAERLFQLERHS-GAYVLLSNMYAALGKHEDAKRVRNMMKLKGVEKVPGCSSIKVNGVV 489
Query: 479 EKLKVG 484
+ G
Sbjct: 490 NEFIAG 495
>gi|297848882|ref|XP_002892322.1| hypothetical protein ARALYDRAFT_311694 [Arabidopsis lyrata subsp.
lyrata]
gi|297338164|gb|EFH68581.1| hypothetical protein ARALYDRAFT_311694 [Arabidopsis lyrata subsp.
lyrata]
Length = 1329
Score = 244 bits (622), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 142/471 (30%), Positives = 236/471 (50%), Gaps = 48/471 (10%)
Query: 32 ADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFV 91
+ F D V + P F NA+IK + P + + FY++M+++ P+SYT+
Sbjct: 823 SSFNRLDLAVSFMTQMQKPNVFVYNALIKGFVTCSHPIRSLEFYVRMLRDSVSPSSYTYS 882
Query: 92 SLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPR 151
SL + A H K G F + + +LI Y G + AR +F +M R
Sbjct: 883 SLVQASAFASGFGESLQAH--IWKFGFGFHVQIQTTLIGFYSASGRIREARKVFDEMPER 940
Query: 152 DLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFRE-- 209
D ++W ++VS + + DM +A+ L + MPE+N +WN +I GY++ GN + LF +
Sbjct: 941 DDVTWTTMVSAYRQVLDMDSANSLANQMPEKNEATWNCLIDGYTRLGNLELAESLFNQMP 1000
Query: 210 -----------------------------MMKSGFRGNDKTMASVLTACGRSARFNEGRS 240
MM+ G ++ TM++V++AC G+
Sbjct: 1001 VKDIISWTTMINGYSRNKRYREAIAVFYKMMEEGIIPDEVTMSTVISACAHLGVLEIGKE 1060
Query: 241 VHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGK 300
VH YTV+ ++ + +AL+D+YSKC +E A VF ++ +NL CWN++I G HG
Sbjct: 1061 VHMYTVQNGFVLDVYIGSALVDMYSKCGSLERALLVFFNLPKKNLFCWNSIIEGLAAHGF 1120
Query: 301 PEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPN 360
+E +K+F + S+ P+ +TF+ V AC A L+ EGR+ +R MID Y I N
Sbjct: 1121 AQEALKMFAKM-----EMESVKPNTVTFVSVFTACTHAGLVEEGRRIYRSMIDDYSIVSN 1175
Query: 361 FAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFE--SIMWVSLLSLCRFQGAVAMVE 418
HY CM +L++ A L EA E++ +M FE +++W +LL CR + + E
Sbjct: 1176 VEHYGCMVHLFSKAGLIYEALELI-------GSMEFEPNAVIWGALLDGCRIHKNLEIAE 1228
Query: 419 RLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRM-PG 468
+ ++P + Y L+++YA +W DVA +R M++ + ++ PG
Sbjct: 1229 IAFNKLMILEPMNSGYYFLLVSMYAEQNRWRDVAEIRGRMRELGIEKICPG 1279
>gi|413937223|gb|AFW71774.1| hypothetical protein ZEAMMB73_242527 [Zea mays]
Length = 625
Score = 244 bits (622), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 144/423 (34%), Positives = 224/423 (52%), Gaps = 28/423 (6%)
Query: 79 IKNGFMPNSYTFVSLFG------------SCAKTGCVERGGMCHGLALKNGVDFELPVMN 126
I+ +P YTF L S A + G+ HG ALK+G V N
Sbjct: 96 IRAATLPTPYTFSLLLASLAASSSRSRTPSAAVCDRLAAAGLAHGQALKHGALAHPVVTN 155
Query: 127 SLINMYGCFGAMDCARNMFVQ--MSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNV 184
L+ +Y G + AR +F + D SWN++VSG+ + GD+ AA E+F MPER +
Sbjct: 156 CLLKLYCALGMLSDARRVFDTSGATSLDAFSWNTMVSGYGKCGDLEAAREVFVRMPERGL 215
Query: 185 VSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGY 244
VSW+ MI ++G +L++F +MM +GFR + ++SVL AC GR VH +
Sbjct: 216 VSWSAMIDACIRAGEFSEALRMFDQMMGNGFRPDAVVLSSVLKACAHLGALERGRWVHRF 275
Query: 245 TVRTSL---KPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKP 301
L N++L+TAL+D+Y KC ++ A VFD + +++V WNAMI G ++G
Sbjct: 276 LKAEGLGRSPDNVMLETALVDMYCKCGCMDEAWWVFDGVQSQDVVLWNAMIGGLAMNGHG 335
Query: 302 EEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNF 361
+ ++LF +++ P+E TF+ V+CAC + EG++ FR M D + I+P
Sbjct: 336 KRALELFRRMLD-----MGFVPNESTFVVVLCACTHTGRVDEGKEIFRSMCD-HGIEPRR 389
Query: 362 AHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLA 421
HY C+A+L A L EEAE +L MP M + W +L+S C V + ER+
Sbjct: 390 EHYGCLADLLGRAGLLEEAEAVLLDMP-----MEPHASQWGALMSSCLMHNNVGVGERVG 444
Query: 422 KSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLKEVVEKL 481
K ++++P D RY L N+YAV G WED +R++M++R + G ++ +V +
Sbjct: 445 KKLIELEPDDGGRYVVLFNLYAVNGLWEDAKALRKMMEERGAKKETGLSFIEWNGLVHEF 504
Query: 482 KVG 484
+ G
Sbjct: 505 RSG 507
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 73/315 (23%), Positives = 128/315 (40%), Gaps = 42/315 (13%)
Query: 43 VFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGC 102
VF + G +A+I A + + + + QM+ NGF P++ S+ +CA G
Sbjct: 206 VFVRMPERGLVSWSAMIDACIRAGEFSEALRMFDQMMGNGFRPDAVVLSSVLKACAHLGA 265
Query: 103 VERGGMCHGLALKNGVDFE---LPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSI 159
+ERG H G+ + + +L++MY G MD A +F + +D++ WN+
Sbjct: 266 LERGRWVHRFLKAEGLGRSPDNVMLETALVDMYCKCGCMDEAWWVFDGVQSQDVVLWNA- 324
Query: 160 VSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGND 219
MI G + +G+ +L+LFR M+ GF N+
Sbjct: 325 ------------------------------MIGGLAMNGHGKRALELFRRMLDMGFVPNE 354
Query: 220 KTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDS 279
T VL AC + R +EG+ + ++P L DL + +E A+ V
Sbjct: 355 STFVVVLCACTHTGRVDEGKEIFRSMCDHGIEPRREHYGCLADLLGRAGLLEEAEAVLLD 414
Query: 280 MA-DRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRA 338
M + + W A++ +H G ++ L+ + PD+ V+
Sbjct: 415 MPMEPHASQWGALMSSCLMHNNVGVGERVGKKLIE-------LEPDDGGRYVVLFNLYAV 467
Query: 339 ELLTEGRKYFRQMID 353
L E K R+M++
Sbjct: 468 NGLWEDAKALRKMME 482
Score = 40.8 bits (94), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 50/221 (22%), Positives = 92/221 (41%), Gaps = 18/221 (8%)
Query: 35 GSPDYTVLVFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLF 94
G D VF + + NA+I + + + + + +M+ GF+PN TFV +
Sbjct: 302 GCMDEAWWVFDGVQSQDVVLWNAMIGGLAMNGHGKRALELFRRMLDMGFVPNESTFVVVL 361
Query: 95 GSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLI 154
+C TG V+ G +G++ L ++ G G ++ A + + M
Sbjct: 362 CACTHTGRVDEGKEIFRSMCDHGIEPRREHYGCLADLLGRAGLLEEAEAVLLDMPMEPHA 421
Query: 155 S-WNSIVSGHVRSGDMSAAH----ELFDIMPE---RNVVSWNI-MISGYSKSGNPGCSLK 205
S W +++S + ++ +L ++ P+ R VV +N+ ++G + K
Sbjct: 422 SQWGALMSSCLMHNNVGVGERVGKKLIELEPDDGGRYVVLFNLYAVNGLWEDA------K 475
Query: 206 LFREMMKSGFRGNDK-TMASVLTACGRSARFNEGRSVHGYT 245
R+MM+ RG K T S + G F G + H T
Sbjct: 476 ALRKMMEE--RGAKKETGLSFIEWNGLVHEFRSGDTRHPQT 514
>gi|296083884|emb|CBI24272.3| unnamed protein product [Vitis vinifera]
Length = 729
Score = 243 bits (621), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 152/480 (31%), Positives = 239/480 (49%), Gaps = 26/480 (5%)
Query: 35 GSPDYTVLVFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLF 94
G D F+ I F N ++ Y++ + + + +M+ G PNS T S
Sbjct: 160 GRMDIARRFFEEIEFKDVFMWNIMVSGYTSKGEFKKALNVFRKMVLEGVKPNSITIASAV 219
Query: 95 GSCAKTGCVERGGMCHGLALK-NGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDL 153
+C + G HG +K +D +L V NSL++ Y +++ AR F + DL
Sbjct: 220 SACTNLSLLRHGREIHGYCIKVEELDSDLLVGNSLVDYYAKCRSVEVARRKFGMIKQTDL 279
Query: 154 ISWNSI--VSGHVRSGDMSAAHELFDIM----------PERNVVSWNIMISGYSKSGNPG 201
+SWN++ V+G + GD AA E F M R+VV WN +IS ++SG
Sbjct: 280 VSWNAMLAVTGFTQYGDGKAALEFFQRMHIACSVFSELSTRDVVVWNSIISACAQSGRSV 339
Query: 202 CSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKP-NIILDTAL 260
+L L REM S N TM S L AC + A +G+ +H + +R L N IL++ L
Sbjct: 340 NALDLLREMNLSNVEVNTVTMVSALPACSKLAALRQGKEIHQFIIRCGLDTCNFILNS-L 398
Query: 261 IDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGS 320
ID+Y +C ++ ++R+FD M R+LV WN MI + +HG + + LF
Sbjct: 399 IDMYGRCGSIQKSRRIFDLMPQRDLVSWNVMISVYGMHGFGMDAVNLFQQFRT-----MG 453
Query: 321 ISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEA 380
+ P+ ITF ++ AC + L+ EG KYF+ M Y + P Y CM +L + A E
Sbjct: 454 LKPNHITFTNLLSACSHSGLIEEGWKYFKMMKTEYAMDPAVEQYACMVDLLSRAGQFNET 513
Query: 381 EEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLN 440
E + KMP + + + +W SLL CR + E A+ +++PQ Y + N
Sbjct: 514 LEFIEKMPFEPN-----AAVWGSLLGACRIHCNPDLAEYAARYLFELEPQSSGNYVLMAN 568
Query: 441 VYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLKEVVEKLKVGHFWRGGMKEEVNKMME 500
+Y+ AG+WED A++R LMK+R + + PGC +++K + VG M E+++ ME
Sbjct: 569 IYSAAGRWEDAAKIRCLMKERGVTKPPGCSWIEVKRKLHSFVVGDTSHPLM-EQISAKME 627
Score = 115 bits (289), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 82/351 (23%), Positives = 155/351 (44%), Gaps = 36/351 (10%)
Query: 5 LQIQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSN 64
Q+ A L+ +G+ F LL+ G + +F ++ F A+++ Y
Sbjct: 30 FQVHAQLVVNGVDVCE-FLGSRLLEVYCQTGCVEDARRMFDKMSERNVFSWTAIMEMYCG 88
Query: 65 SCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPV 124
++ + + M+ G P+ + F +F +C++ G + L G + V
Sbjct: 89 LGDYEETIKLFYLMVNEGVRPDHFVFPKVFKACSELKNYRVGKDVYDYMLSIGFEGNSCV 148
Query: 125 MNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNV 184
S+++M+ G MD AR F ++ +D+ WN +VSG+ G+ A
Sbjct: 149 KGSILDMFIKCGRMDIARRFFEEIEFKDVFMWNIMVSGYTSKGEFKKA------------ 196
Query: 185 VSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGY 244
L +FR+M+ G + N T+AS ++AC + GR +HGY
Sbjct: 197 -------------------LNVFRKMVLEGVKPNSITIASAVSACTNLSLLRHGREIHGY 237
Query: 245 TVRT-SLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAM--ILGHCIHGKP 301
++ L ++++ +L+D Y+KC+ VEVA+R F + +LV WNAM + G +G
Sbjct: 238 CIKVEELDSDLLVGNSLVDYYAKCRSVEVARRKFGMIKQTDLVSWNAMLAVTGFTQYGDG 297
Query: 302 EEGIKLFTAL-VNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQM 351
+ ++ F + + +V + D + + +I AC ++ R+M
Sbjct: 298 KAALEFFQRMHIACSVFSELSTRDVVVWNSIISACAQSGRSVNALDLLREM 348
Score = 95.9 bits (237), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 58/241 (24%), Positives = 116/241 (48%), Gaps = 6/241 (2%)
Query: 163 HVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTM 222
+ ++G + A +FD M ERNV SW ++ Y G+ ++KLF M+ G R +
Sbjct: 55 YCQTGCVEDARRMFDKMSERNVFSWTAIMEMYCGLGDYEETIKLFYLMVNEGVRPDHFVF 114
Query: 223 ASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMAD 282
V AC + G+ V+ Y + + N + +++D++ KC ++++A+R F+ +
Sbjct: 115 PKVFKACSELKNYRVGKDVYDYMLSIGFEGNSCVKGSILDMFIKCGRMDIARRFFEEIEF 174
Query: 283 RNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLT 342
+++ WN M+ G+ G+ ++ + +F +V + G + P+ IT + AC LL
Sbjct: 175 KDVFMWNIMVSGYTSKGEFKKALNVFRKMV---LEG--VKPNSITIASAVSACTNLSLLR 229
Query: 343 EGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWV 402
GR+ I ++ + + + YA E A M + D +S+ +++ V
Sbjct: 230 HGREIHGYCIKVEELDSDLLVGNSLVDYYAKCRSVEVARRKF-GMIKQTDLVSWNAMLAV 288
Query: 403 S 403
+
Sbjct: 289 T 289
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 41/130 (31%), Positives = 62/130 (47%), Gaps = 5/130 (3%)
Query: 223 ASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMAD 282
AS+L C + G VH V + L + L+++Y + VE A+R+FD M++
Sbjct: 14 ASILQKCRKLYNLRLGFQVHAQLVVNGVDVCEFLGSRLLEVYCQTGCVEDARRMFDKMSE 73
Query: 283 RNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLT 342
RN+ W A++ +C G EE IKLF +VN V PD F V AC +
Sbjct: 74 RNVFSWTAIMEMYCGLGDYEETIKLFYLMVNEGV-----RPDHFVFPKVFKACSELKNYR 128
Query: 343 EGRKYFRQMI 352
G+ + M+
Sbjct: 129 VGKDVYDYML 138
>gi|347954514|gb|AEP33757.1| organelle transcript processing 82, partial [Aethionema
cordifolium]
Length = 679
Score = 243 bits (621), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 143/472 (30%), Positives = 239/472 (50%), Gaps = 46/472 (9%)
Query: 32 ADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFV 91
A G+ D +F I NA+I Y+ + + + +M+K P+ T
Sbjct: 155 ASRGNMDKAQKMFDEIPIKDVVSWNAMISGYAEIGRYKEALELFNEMMKMDVKPDESTMA 214
Query: 92 SLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPR 151
++ +C +G VE G H +G L ++N+LI++Y
Sbjct: 215 TVLSTCTHSGNVELGRQIHSWIDNHGFGSNLKLVNALIDLYS------------------ 256
Query: 152 DLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMM 211
+ G+M AH LF+ + ++V+SWN +I GY+ + +L +F+EM+
Sbjct: 257 -------------KCGEMERAHGLFEGLQYKDVISWNTLIGGYAYINHHKEALLVFQEML 303
Query: 212 KSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLK---PNIILDTALIDLYSKCQ 268
K G ND TM S+L AC + GR +H Y + LK N L T+LID+Y+KC
Sbjct: 304 KLGETPNDVTMLSILPACAHLGAIDIGRWIHVY-IDKKLKGIITNTSLQTSLIDMYAKCG 362
Query: 269 KVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITF 328
+E A +VFD++ +++L NAMI G +HG+ + L + + I PD+ITF
Sbjct: 363 NIEAANQVFDTILNKSLSSCNAMIFGFAMHGRADAAFDLLSRM-----KKDGIEPDDITF 417
Query: 329 IGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMP 388
+G++ AC A L GRK F+ M Y+I+P HY CM +L + L +EAEE++ M
Sbjct: 418 VGLLSACSHAGLSDLGRKIFKSMTLDYRIEPKLEHYGCMIDLLGRSGLFKEAEELINSM- 476
Query: 389 EDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQW 448
M + ++W SLL C+ + + E +A+ + ++P++ Y L N+YA + +W
Sbjct: 477 ----TMEPDGVIWGSLLKACKIHKNLELGELIAQKLMKIEPKNPGSYVLLSNIYATSARW 532
Query: 449 EDVARVRELMKKRRMGRMPGCRLVDLKEVVEKLKVGHFWRGGMKEEVNKMME 500
+DVARVR L+ + + ++PGC +++ +V + +G + K E+ KM+E
Sbjct: 533 DDVARVRTLLNDKGLKKVPGCSSIEIDSMVHEFLIGDKFHPQNK-EIYKMLE 583
Score = 207 bits (528), Expect = 9e-51, Method: Compositional matrix adjust.
Identities = 124/401 (30%), Positives = 205/401 (51%), Gaps = 10/401 (2%)
Query: 34 FGSPDYTVLVFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSL 93
F Y + VFK I P N +I+ ++ S P + Y+ MI G PNSYTF L
Sbjct: 25 FHGLPYAISVFKSIQEPNQLSWNTMIRGHALSSDPISALNLYVYMISLGLSPNSYTFPFL 84
Query: 94 FGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDL 153
F SCAK+ + G H LK G+ +L V SLI+MY G ++ A +F S RD+
Sbjct: 85 FKSCAKSKAAQEGKQIHAQILKYGLTVDLHVHTSLISMYAQNGIVEDAHKVFDTSSHRDV 144
Query: 154 ISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKS 213
+S+ ++++G+ G+M A ++FD +P ++VVSWN MISGY++ G +L+LF EMMK
Sbjct: 145 VSYTAMITGYASRGNMDKAQKMFDEIPIKDVVSWNAMISGYAEIGRYKEALELFNEMMKM 204
Query: 214 GFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVA 273
+ ++ TMA+VL+ C S GR +H + N+ L ALIDLYSKC ++E A
Sbjct: 205 DVKPDESTMATVLSTCTHSGNVELGRQIHSWIDNHGFGSNLKLVNALIDLYSKCGEMERA 264
Query: 274 QRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVIC 333
+F+ + ++++ WN +I G+ +E + +F ++ +P+++T + ++
Sbjct: 265 HGLFEGLQYKDVISWNTLIGGYAYINHHKEALLVFQEMLK-----LGETPNDVTMLSILP 319
Query: 334 ACVRAELLTEGRKYFRQMID--FYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDN 391
AC + GR + ID I N + + ++YA E A ++ + N
Sbjct: 320 ACAHLGAIDIGR-WIHVYIDKKLKGIITNTSLQTSLIDMYAKCGNIEAANQVFDTIL--N 376
Query: 392 DNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDF 432
++S + M R A ++ R+ K ++ D F
Sbjct: 377 KSLSSCNAMIFGFAMHGRADAAFDLLSRMKKDGIEPDDITF 417
Score = 41.6 bits (96), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 45/191 (23%), Positives = 83/191 (43%), Gaps = 10/191 (5%)
Query: 15 GLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSNSCVPDQGVVF 74
G+ N S T +L+ A G+ + VF I N NA+I ++ D
Sbjct: 343 GIITNTSLQT-SLIDMYAKCGNIEAANQVFDTILNKSLSSCNAMIFGFAMHGRADAAFDL 401
Query: 75 YLQMIKNGFMPNSYTFVSLFGSCAKTGCVERG-GMCHGLALKNGVDFELPVMNSLINMYG 133
+M K+G P+ TFV L +C+ G + G + + L ++ +L +I++ G
Sbjct: 402 LSRMKKDGIEPDDITFVGLLSACSHAGLSDLGRKIFKSMTLDYRIEPKLEHYGCMIDLLG 461
Query: 134 CFGAMDCARNMFVQMSPR-DLISWNSIVSG-----HVRSGDMSAAHELFDIMPERNVVSW 187
G A + M+ D + W S++ ++ G++ A +L I P +N S+
Sbjct: 462 RSGLFKEAEELINSMTMEPDGVIWGSLLKACKIHKNLELGEL-IAQKLMKIEP-KNPGSY 519
Query: 188 NIMISGYSKSG 198
++ + Y+ S
Sbjct: 520 VLLSNIYATSA 530
>gi|296089760|emb|CBI39579.3| unnamed protein product [Vitis vinifera]
Length = 459
Score = 243 bits (621), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 153/473 (32%), Positives = 232/473 (49%), Gaps = 42/473 (8%)
Query: 3 QLLQIQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAY 62
QL QI AH++ L +N + + + Y LVF NP N++IK Y
Sbjct: 24 QLPQIHAHILRHHLHQSNQILS-HFISVCGALDKMGYANLVFHQTQNPNLLLFNSMIKGY 82
Query: 63 SNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFEL 122
S + ++ + QM G P+ +TF L SC +G + + V FE
Sbjct: 83 SLCGPSENSLLLFSQMKNRGIWPDEFTFAPLLKSC--SGICDNRIGKGVHGVVIVVGFER 140
Query: 123 --PVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMP 180
+ +I++Y G M+ A+ +F +M RD M
Sbjct: 141 FSSIRIGIIDLYTSCGRMEDAKKVFDEMLDRD--------------------------MR 174
Query: 181 ERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRS 240
+R+VVSWN MI+G +SG G +L+LFREM GF +D T+ ++L C R + G
Sbjct: 175 DRSVVSWNSMIAGLEQSGRDGEALELFREMWDHGFEPDDATVVTILPVCARLGAVDVGEW 234
Query: 241 VHGYTVRTSLKPNII-LDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHG 299
+H Y + L + I + +L+D Y KC +E A RVF+ M +N+V WNAMI G +G
Sbjct: 235 IHSYAESSRLLRDFISVGNSLVDFYCKCGILETAWRVFNEMPQKNVVSWNAMISGLTFNG 294
Query: 300 KPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKP 359
K E G LF ++N V P++ TF+GV+ C A L+ GR F M +K++P
Sbjct: 295 KGELGADLFEEMINKGV-----RPNDATFVGVLSCCAHAGLVERGRNLFTSMTVDHKMEP 349
Query: 360 NFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVER 419
H+ CM +L A EEA +++R MP M +++W SLLS R G V E
Sbjct: 350 KLEHFGCMVDLLARNGCMEEARDLVRTMP-----MRPNAVLWGSLLSAYRTIGDVKHAEC 404
Query: 420 LAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLV 472
K ++++P + Y L NVYA G+W++V +VR LMK++ + + PG +V
Sbjct: 405 AVKELIELEPWNSGNYVLLSNVYAEDGKWDEVEKVRALMKEKNIRKNPGQSMV 457
>gi|225441789|ref|XP_002283735.1| PREDICTED: pentatricopeptide repeat-containing protein At4g21065
[Vitis vinifera]
Length = 564
Score = 243 bits (621), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 148/504 (29%), Positives = 262/504 (51%), Gaps = 48/504 (9%)
Query: 1 MKQLLQIQAHLITSGLFFNN-SFWTINLLKHSA--DFGSPDYTVLVFKCINNPGTFCVNA 57
M+ L QI A L+T + ++ SF ++ A +G DY +F I P F N+
Sbjct: 1 MRVLRQIHARLLTHAMPISSISFGLCKIIGFCALSPYGDIDYARKLFSQIQRPNIFSWNS 60
Query: 58 VIKAYSNSCVPD-QGVVFYLQMIKNGFM-PNSYTFVSLFGSCAKTGCVERGGMCHGLALK 115
+I+ S S P + V+ + +M++ G+ PN++T + +C+ +E G H LK
Sbjct: 61 MIRGCSQSQTPSKEPVILFRKMVRRGYPNPNTFTMAFVLKACSIVSALEEGQQVHANVLK 120
Query: 116 NGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHEL 175
+G V +L+N Y + D+ A ++
Sbjct: 121 SGFGSSPFVETALVNFYA-------------------------------KCEDIVLASKV 149
Query: 176 FDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARF 235
FD + +RN+V+W+ MISGY++ G +L LFR+M K+G ++ TM SV++AC S
Sbjct: 150 FDEITDRNLVAWSTMISGYARIGLVNEALGLFRDMQKAGVVPDEVTMVSVISACAASGAL 209
Query: 236 NEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGH 295
+ G+ VH Y + ++ ++ L TAL+++Y+KC +E A+ VFD+M ++ W++MI+G
Sbjct: 210 DTGKWVHAYINKQLIETDLELSTALVNMYAKCGCIERAKEVFDAMPVKDTKAWSSMIVGL 269
Query: 296 CIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFY 355
I+G E+ ++ F + V P+ +TFIGV+ AC + L++EGR+Y+ M++F
Sbjct: 270 AINGLAEDALEEFFRMEEAKV-----KPNHVTFIGVLSACAHSGLVSEGRRYWSSMLEF- 323
Query: 356 KIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVA 415
I P+ Y CM +L A L E+A ++ MP +S ++W +LL C+ +
Sbjct: 324 GIVPSMELYGCMVDLLCRASLVEDACTLVETMP-----ISPNPVIWRTLLVGCKKSKNLD 378
Query: 416 MVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLK 475
E +A+ ++++P + Y L N+YA QWE +++VR+ MK + +PGC +++
Sbjct: 379 KSEVVAQRLLELEPHNAENYILLSNLYASMSQWEKMSQVRKKMKGMGIKAVPGCSSIEVD 438
Query: 476 EVVEKLKVGHFWRGGMKEEVNKMM 499
+V + +G W EV +++
Sbjct: 439 GLVHEFVMGD-WSHPEAMEVREIL 461
>gi|347954524|gb|AEP33762.1| organelle transcript processing 82, partial [Hesperis matronalis]
Length = 672
Score = 243 bits (621), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 137/437 (31%), Positives = 227/437 (51%), Gaps = 51/437 (11%)
Query: 56 NAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALK 115
NA+I Y+ + + + + +M+K P+ T ++ +CA++G +E G H
Sbjct: 176 NAMISGYAETGNYKKALELFKEMMKTNVKPDESTMATVVSACAQSGSIELGRQVHSWIND 235
Query: 116 NGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHEL 175
+G L ++N+LI++Y + G++ A EL
Sbjct: 236 HGFGSNLKIVNALIDLYS-------------------------------KCGEVETACEL 264
Query: 176 FDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARF 235
+ + ++V+SWN +I GY+ +L LF+EM++SG ND TM S+L AC
Sbjct: 265 LEGLSNKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAI 324
Query: 236 NEGRSVHGYTVRTSLKPNII-----LDTALIDLYSKCQKVEVAQRVFDSMA-DRNLVCWN 289
+ GR +H Y + LK ++ L T+LID+Y+KC ++ A +V DS A +R+L WN
Sbjct: 325 DIGRWIHVY-IDKKLKGVVVTNASSLRTSLIDMYAKCGDIDAAPQVSDSSAFNRSLSTWN 383
Query: 290 AMILGHCIHGKPEEGIKLFTAL-VNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYF 348
AMI G +HG+ +F+ + NG I PD+ITF+G++ AC + +L GR F
Sbjct: 384 AMIFGFAMHGRANAAFDIFSRMRKNG------IEPDDITFVGLLSACSHSGMLDLGRNIF 437
Query: 349 RQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLC 408
R M Y I P HY CM +L + L +EAEE++ MP + D ++W SLL C
Sbjct: 438 RSMRQDYNITPKLEHYGCMIDLLGHSGLFKEAEEMINTMPMEPDG-----VIWCSLLKAC 492
Query: 409 RFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRM-GRMP 467
+ G + + E AK + ++P++ Y L N+YA AG+W +V ++R L+ + M ++P
Sbjct: 493 KIHGNLELGESFAKKLIKIEPENPGSYVLLSNIYATAGKWNEVXKIRTLLNDKGMKKKVP 552
Query: 468 GCRLVDLKEVVEKLKVG 484
GC +++ VV + +G
Sbjct: 553 GCSSIEIDSVVHEFIIG 569
Score = 211 bits (536), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 111/333 (33%), Positives = 188/333 (56%), Gaps = 8/333 (2%)
Query: 16 LFFNNSFWTINLLKH---SADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSNSCVPDQGV 72
LF N + LL+ S F Y + VF+ I P N + + ++ S P +
Sbjct: 1 LFPNTHYAXSQLLEFCILSPHFDGLPYAISVFETIPEPNQLIWNIMFRGHALSSDPVSAL 60
Query: 73 VFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMY 132
Y+ MI G +PN +TF L SCAK+ + G HG LK G D +L V SLI+MY
Sbjct: 61 KLYVVMISLGLLPNFFTFPFLLKSCAKSKTFKEGQQIHGHVLKLGFDLDLYVHTSLISMY 120
Query: 133 GCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMIS 192
G ++ A+ +F + S RD++S+ ++++G+ G + +A ++FD +P ++VVSWN MIS
Sbjct: 121 AQNGRLEDAQKVFDRSSHRDVVSYTALITGYASRGYIESAQKMFDEIPIKDVVSWNAMIS 180
Query: 193 GYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKP 252
GY+++GN +L+LF+EMMK+ + ++ TMA+V++AC +S GR VH +
Sbjct: 181 GYAETGNYKKALELFKEMMKTNVKPDESTMATVVSACAQSGSIELGRQVHSWINDHGFGS 240
Query: 253 NIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALV 312
N+ + ALIDLYSKC +VE A + + +++++++ WN +I G+ +E + LF ++
Sbjct: 241 NLKIVNALIDLYSKCGEVETACELLEGLSNKDVISWNTLIGGYTHMNLYKEALLLFQEML 300
Query: 313 NGTVAGGSISPDEITFIGVICACVRAELLTEGR 345
+P+++T + ++ AC + GR
Sbjct: 301 R-----SGETPNDVTMLSILPACAHLGAIDIGR 328
Score = 68.6 bits (166), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 62/281 (22%), Positives = 116/281 (41%), Gaps = 46/281 (16%)
Query: 43 VFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGC 102
+ + ++N N +I Y++ + + ++ + +M+++G PN T +S+ +CA G
Sbjct: 264 LLEGLSNKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGA 323
Query: 103 VERGGMCH--------GLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMS-PRDL 153
++ G H G+ + N SLI+MY G +D A + + R L
Sbjct: 324 IDIGRWIHVYIDKKLKGVVVTNASSLR----TSLIDMYAKCGDIDAAPQVSDSSAFNRSL 379
Query: 154 ISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKS 213
+WN+++ G G +AA FDI F M K+
Sbjct: 380 STWNAMIFGFAMHGRANAA---FDI----------------------------FSRMRKN 408
Query: 214 GFRGNDKTMASVLTACGRSARFNEGRSV-HGYTVRTSLKPNIILDTALIDLYSKCQKVEV 272
G +D T +L+AC S + GR++ ++ P + +IDL +
Sbjct: 409 GIEPDDITFVGLLSACSHSGMLDLGRNIFRSMRQDYNITPKLEHYGCMIDLLGHSGLFKE 468
Query: 273 AQRVFDSMA-DRNLVCWNAMILGHCIHGKPEEGIKLFTALV 312
A+ + ++M + + V W +++ IHG E G L+
Sbjct: 469 AEEMINTMPMEPDGVIWCSLLKACKIHGNLELGESFAKKLI 509
>gi|242050128|ref|XP_002462808.1| hypothetical protein SORBIDRAFT_02g032350 [Sorghum bicolor]
gi|241926185|gb|EER99329.1| hypothetical protein SORBIDRAFT_02g032350 [Sorghum bicolor]
Length = 638
Score = 243 bits (621), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 138/436 (31%), Positives = 231/436 (52%), Gaps = 11/436 (2%)
Query: 26 NLLKHS-ADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFM 84
N L HS A GS + F + + N++I Y+ + + + +M + GF+
Sbjct: 151 NALLHSYASAGSLGDSRRFFDEMVDRNVVSWNSMIGGYAQAGDTREVCSLFGEMRRQGFL 210
Query: 85 PNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNM 144
+ +T VSL +C++ G +E G + H L +G +L + ++L++MYG G + AR
Sbjct: 211 EDEFTLVSLLIACSQEGNLEIGRLVHCRMLVSGSRVDLILESALVDMYGKCGDLWMARRC 270
Query: 145 FVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSL 204
F M + ++SW S++ + G ++AA FD MPERN+VSWN MIS Y + G +L
Sbjct: 271 FEMMPIKSVVSWTSMLCAQTKHGSVNAARCWFDHMPERNIVSWNAMISCYVQRGQCHEAL 330
Query: 205 KLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLY 264
L+ +M G ++ T+ +VL+A GR G+ VH Y P++ L +L+D+Y
Sbjct: 331 DLYNQMQSQGLAPDEITLVAVLSASGRIGDLTVGKMVHLYIRDNIYNPDVSLVNSLLDMY 390
Query: 265 SKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPD 324
+KC +V+ A +F M +RN+V WN +I G +HG+ + I F ++V S +PD
Sbjct: 391 AKCGQVDTAISLFSEMCNRNVVSWNVIIGGLAMHGRALDTITFFRSMVT-----DSFAPD 445
Query: 325 EITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEIL 384
ITF+ ++ AC LL G+ YF M Y +K HY CM +L E+A ++
Sbjct: 446 GITFVALLSACSHGGLLETGQHYFESMRHVYNVKHEVEHYACMVDLLGRRGHLEKAVCLI 505
Query: 385 RKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAV 444
++MP M + ++W +LL CR G V + ++ K ++++ + + N+
Sbjct: 506 KEMP-----MKPDVVVWGALLGACRIHGNVKIGRQVIKQLLELEGISGGLFVLISNLLYE 560
Query: 445 AGQWEDVARVRELMKK 460
QWED+ R+R+LMK+
Sbjct: 561 THQWEDMKRLRKLMKE 576
Score = 145 bits (367), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 110/425 (25%), Positives = 190/425 (44%), Gaps = 72/425 (16%)
Query: 1 MKQLLQIQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVL-----VFKCINNPGTFCV 55
+++L Q+ AHL+ G S + LL + VL +F I P
Sbjct: 24 IQRLNQLHAHLLVHGSL---SAASDLLLASYCALAKAGHGVLCHARRLFDGIPGPDRVMY 80
Query: 56 NAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALK 115
N +I+AY NS P + + + M++ G +PN +T + +C E HG+AL+
Sbjct: 81 NTIIRAYCNSSCPREALRLHRGMLRRGILPNEFTLPFVVKACTIAQAREHALAVHGVALR 140
Query: 116 NGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHEL 175
G+ ++ V N+L++ Y G++ +R F +M R+++SWNS++ G+ ++GD
Sbjct: 141 LGLVGQVFVGNALLHSYASAGSLGDSRRFFDEMVDRNVVSWNSMIGGYAQAGD------- 193
Query: 176 FDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARF 235
R V S LF EM + GF ++ T+ S+L AC +
Sbjct: 194 -----TREVCS-------------------LFGEMRRQGFLEDEFTLVSLLIACSQEGNL 229
Query: 236 NEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGH 295
GR VH + + + ++IL++AL+D+Y KC + +A+R F+ M +++V W +M+
Sbjct: 230 EIGRLVHCRMLVSGSRVDLILESALVDMYGKCGDLWMARRCFEMMPIKSVVSWTSMLCAQ 289
Query: 296 CIHGK-----------PEEGIKLFTALVNGTVAGGS---------------ISPDEITFI 329
HG PE I + A+++ V G ++PDEIT +
Sbjct: 290 TKHGSVNAARCWFDHMPERNIVSWNAMISCYVQRGQCHEALDLYNQMQSQGLAPDEITLV 349
Query: 330 GVICACVRAELLTEGRK---YFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRK 386
V+ A R LT G+ Y R I P+ + + ++YA + A + +
Sbjct: 350 AVLSASGRIGDLTVGKMVHLYIRDNI----YNPDVSLVNSLLDMYAKCGQVDTAISLFSE 405
Query: 387 MPEDN 391
M N
Sbjct: 406 MCNRN 410
>gi|115468780|ref|NP_001057989.1| Os06g0597500 [Oryza sativa Japonica Group]
gi|50725579|dbj|BAD33047.1| PPR-repeat protein-like [Oryza sativa Japonica Group]
gi|113596029|dbj|BAF19903.1| Os06g0597500 [Oryza sativa Japonica Group]
gi|125597760|gb|EAZ37540.1| hypothetical protein OsJ_21869 [Oryza sativa Japonica Group]
Length = 530
Score = 243 bits (621), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 144/459 (31%), Positives = 232/459 (50%), Gaps = 10/459 (2%)
Query: 17 FFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYL 76
F +++ +L++ G D VF + + N +++ Y V
Sbjct: 80 FRWDAYTGSSLMEMYTMLGRVDIARKVFDEMPSRALVLWNMMVRCYIRCGWYSAAVALSE 139
Query: 77 QMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFG 136
QM ++G P+ T V+ +C++ + G H + + N F LPV N+L++MY
Sbjct: 140 QMERSGVTPDRVTLVTAVTACSRARDLSLGRRIH-VYMDNVFGFNLPVANALLDMYTKND 198
Query: 137 AMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSK 196
++ A +F QM R++ISW +VSG+ +G + A LF+ E++++ W MI+ +
Sbjct: 199 CLEEAVKLFEQMPARNIISWTILVSGYGLAGQLDKARVLFNQCKEKDLILWTAMINACVQ 258
Query: 197 SGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIIL 256
G +L LFR+M + T+ ++LT C ++G +H Y + +K + +L
Sbjct: 259 HGCFEEALTLFRDMQMQRVEPDRFTVVTLLTCCANLGALDQGEWIHQYAEQRKMKIDAVL 318
Query: 257 DTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTV 316
TALID+YSKC +E + VF M R+ W A+I G +G+ ++LF + V
Sbjct: 319 GTALIDMYSKCGHIEKSLEVFWRMQGRDATAWTAIICGLATNGQAGRALELFQDMQRSKV 378
Query: 317 AGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAEL 376
PD +TFIGV+ AC L+ EGRK F M + Y+I+P HY C+ NL A L
Sbjct: 379 -----KPDGVTFIGVLSACCHGGLVDEGRKQFHAMREVYQIEPRVEHYSCLVNLLGRAGL 433
Query: 377 TEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQ 436
+EAE ++ +P + D M ++ +LL+ C+ G V M ERL K + D Q
Sbjct: 434 LDEAERLIGDVPINKDAMP----LFGALLTACKAHGNVEMSERLTKRICEQDSQITDVNL 489
Query: 437 FLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLK 475
+ NVYA A +WEDV RVR M + + GC L+++K
Sbjct: 490 LMSNVYATASRWEDVIRVRGKMAHPTVKKNAGCSLIEVK 528
Score = 102 bits (255), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 81/371 (21%), Positives = 160/371 (43%), Gaps = 60/371 (16%)
Query: 56 NAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALK 115
N +I+ + + + Y + G + +S+T+ + + G H A+K
Sbjct: 18 NVLIRTLARRGSFARVMAVYYDLRARGLVADSFTYPFVLRAVGVLKLSVEGRKAHAAAVK 77
Query: 116 NGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHEL 175
G ++ +SL+ MY G +D AR +F +M R L+ WN +V ++R G SAA
Sbjct: 78 TGFRWDAYTGSSLMEMYTMLGRVDIARKVFDEMPSRALVLWNMMVRCYIRCGWYSAA--- 134
Query: 176 FDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARF 235
+ L +M +SG + T+ + +TAC R+
Sbjct: 135 ----------------------------VALSEQMERSGVTPDRVTLVTAVTACSRARDL 166
Query: 236 NEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGH 295
+ GR +H Y + N+ + AL+D+Y+K +E A ++F+ M RN++ W ++ G+
Sbjct: 167 SLGRRIHVY-MDNVFGFNLPVANALLDMYTKNDCLEEAVKLFEQMPARNIISWTILVSGY 225
Query: 296 CIHGK-----------PEEGIKLFTALVNGTVAGG---------------SISPDEITFI 329
+ G+ E+ + L+TA++N V G + PD T +
Sbjct: 226 GLAGQLDKARVLFNQCKEKDLILWTAMINACVQHGCFEEALTLFRDMQMQRVEPDRFTVV 285
Query: 330 GVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPE 389
++ C L +G ++ Q + K+K + + ++Y+ E++ E+ +M +
Sbjct: 286 TLLTCCANLGALDQG-EWIHQYAEQRKMKIDAVLGTALIDMYSKCGHIEKSLEVFWRM-Q 343
Query: 390 DNDNMSFESIM 400
D ++ +I+
Sbjct: 344 GRDATAWTAII 354
Score = 82.4 bits (202), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 54/219 (24%), Positives = 102/219 (46%), Gaps = 13/219 (5%)
Query: 188 NIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVR 247
N++I ++ G+ + ++ ++ G + T VL A G EGR H V+
Sbjct: 18 NVLIRTLARRGSFARVMAVYYDLRARGLVADSFTYPFVLRAVGVLKLSVEGRKAHAAAVK 77
Query: 248 TSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKL 307
T + + ++L+++Y+ +V++A++VFD M R LV WN M+ + G + L
Sbjct: 78 TGFRWDAYTGSSLMEMYTMLGRVDIARKVFDEMPSRALVLWNMMVRCYIRCGWYSAAVAL 137
Query: 308 FTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCM 367
+ + ++PD +T + + AC RA L+ GR+ M + + A+ +
Sbjct: 138 -----SEQMERSGVTPDRVTLVTAVTACSRARDLSLGRRIHVYMDNVFGFNLPVAN--AL 190
Query: 368 ANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLS 406
++Y + EEA ++ +MP N I W L+S
Sbjct: 191 LDMYTKNDCLEEAVKLFEQMPARN------IISWTILVS 223
>gi|297739678|emb|CBI29860.3| unnamed protein product [Vitis vinifera]
Length = 655
Score = 243 bits (620), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 148/504 (29%), Positives = 262/504 (51%), Gaps = 48/504 (9%)
Query: 1 MKQLLQIQAHLITSGLFFNN-SFWTINLLKHSA--DFGSPDYTVLVFKCINNPGTFCVNA 57
M+ L QI A L+T + ++ SF ++ A +G DY +F I P F N+
Sbjct: 70 MRVLRQIHARLLTHAMPISSISFGLCKIIGFCALSPYGDIDYARKLFSQIQRPNIFSWNS 129
Query: 58 VIKAYSNSCVPD-QGVVFYLQMIKNGFM-PNSYTFVSLFGSCAKTGCVERGGMCHGLALK 115
+I+ S S P + V+ + +M++ G+ PN++T + +C+ +E G H LK
Sbjct: 130 MIRGCSQSQTPSKEPVILFRKMVRRGYPNPNTFTMAFVLKACSIVSALEEGQQVHANVLK 189
Query: 116 NGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHEL 175
+G V +L+N Y + D+ A ++
Sbjct: 190 SGFGSSPFVETALVNFYA-------------------------------KCEDIVLASKV 218
Query: 176 FDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARF 235
FD + +RN+V+W+ MISGY++ G +L LFR+M K+G ++ TM SV++AC S
Sbjct: 219 FDEITDRNLVAWSTMISGYARIGLVNEALGLFRDMQKAGVVPDEVTMVSVISACAASGAL 278
Query: 236 NEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGH 295
+ G+ VH Y + ++ ++ L TAL+++Y+KC +E A+ VFD+M ++ W++MI+G
Sbjct: 279 DTGKWVHAYINKQLIETDLELSTALVNMYAKCGCIERAKEVFDAMPVKDTKAWSSMIVGL 338
Query: 296 CIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFY 355
I+G E+ ++ F + V P+ +TFIGV+ AC + L++EGR+Y+ M++F
Sbjct: 339 AINGLAEDALEEFFRMEEAKV-----KPNHVTFIGVLSACAHSGLVSEGRRYWSSMLEF- 392
Query: 356 KIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVA 415
I P+ Y CM +L A L E+A ++ MP +S ++W +LL C+ +
Sbjct: 393 GIVPSMELYGCMVDLLCRASLVEDACTLVETMP-----ISPNPVIWRTLLVGCKKSKNLD 447
Query: 416 MVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLK 475
E +A+ ++++P + Y L N+YA QWE +++VR+ MK + +PGC +++
Sbjct: 448 KSEVVAQRLLELEPHNAENYILLSNLYASMSQWEKMSQVRKKMKGMGIKAVPGCSSIEVD 507
Query: 476 EVVEKLKVGHFWRGGMKEEVNKMM 499
+V + +G W EV +++
Sbjct: 508 GLVHEFVMGD-WSHPEAMEVREIL 530
>gi|15233584|ref|NP_193218.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75274931|sp|O23337.1|PP311_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g14820
gi|2244839|emb|CAB10261.1| hypothetical protein [Arabidopsis thaliana]
gi|7268228|emb|CAB78524.1| hypothetical protein [Arabidopsis thaliana]
gi|332658106|gb|AEE83506.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 722
Score = 243 bits (620), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 130/454 (28%), Positives = 234/454 (51%), Gaps = 10/454 (2%)
Query: 20 NSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMI 79
+ F + A G +Y VF +++ N +I+ Y + D+ + +M
Sbjct: 145 DPFVETGFMDMYASCGRINYARNVFDEMSHRDVVTWNTMIERYCRFGLVDEAFKLFEEMK 204
Query: 80 KNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMD 139
+ MP+ ++ +C +TG + + ++N V + ++ +L+ MY G MD
Sbjct: 205 DSNVMPDEMILCNIVSACGRTGNMRYNRAIYEFLIENDVRMDTHLLTALVTMYAGAGCMD 264
Query: 140 CARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGN 199
AR F +MS R+L ++VSG+ + G + A +FD ++++V W MIS Y +S
Sbjct: 265 MAREFFRKMSVRNLFVSTAMVSGYSKCGRLDDAQVIFDQTEKKDLVCWTTMISAYVESDY 324
Query: 200 PGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTA 259
P +L++F EM SG + + +M SV++AC ++ + VH L+ + ++ A
Sbjct: 325 PQEALRVFEEMCCSGIKPDVVSMFSVISACANLGILDKAKWVHSCIHVNGLESELSINNA 384
Query: 260 LIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGG 319
LI++Y+KC ++ + VF+ M RN+V W++MI +HG+ + + LF + V
Sbjct: 385 LINMYAKCGGLDATRDVFEKMPRRNVVSWSSMINALSMHGEASDALSLFARMKQENV--- 441
Query: 320 SISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEE 379
P+E+TF+GV+ C + L+ EG+K F M D Y I P HY CM +L+ A L E
Sbjct: 442 --EPNEVTFVGVLYGCSHSGLVEEGKKIFASMTDEYNITPKLEHYGCMVDLFGRANLLRE 499
Query: 380 AEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLL 439
A E++ MP ++ ++W SL+S CR G + + + AK ++++P +
Sbjct: 500 ALEVIESMP-----VASNVVIWGSLMSACRIHGELELGKFAAKRILELEPDHDGALVLMS 554
Query: 440 NVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVD 473
N+YA +WEDV +R +M+++ + + G +D
Sbjct: 555 NIYAREQRWEDVRNIRRVMEEKNVFKEKGLSRID 588
Score = 133 bits (334), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 93/403 (23%), Positives = 192/403 (47%), Gaps = 25/403 (6%)
Query: 39 YTVLVFKCINNPGTFCV-NAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSC 97
Y + VF I +P V N ++ S S P ++FY ++ G + ++F+ + +
Sbjct: 62 YALNVFSSIPSPPESIVFNPFLRDLSRSSEPRATILFYQRIRHVGGRLDQFSFLPILKAV 121
Query: 98 AKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWN 157
+K + G HG+A K + V ++MY G ++ ARN+F +MS RD+++WN
Sbjct: 122 SKVSALFEGMELHGVAFKIATLCDPFVETGFMDMYASCGRINYARNVFDEMSHRDVVTWN 181
Query: 158 SIVSGHVRSGDMSAAHELFDIMPERNVVSWNI----MISGYSKSGNPGCSLKLFREMMKS 213
+++ + R G + A +LF+ M + NV+ + ++S ++GN + ++ ++++
Sbjct: 182 TMIERYCRFGLVDEAFKLFEEMKDSNVMPDEMILCNIVSACGRTGNMRYNRAIYEFLIEN 241
Query: 214 GFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVA 273
R + + +++T + + R + + S++ N+ + TA++ YSKC +++ A
Sbjct: 242 DVRMDTHLLTALVTMYAGAGCMDMARE---FFRKMSVR-NLFVSTAMVSGYSKCGRLDDA 297
Query: 274 QRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVIC 333
Q +FD ++LVCW MI + P+E +++F + I PD ++ VI
Sbjct: 298 QVIFDQTEKKDLVCWTTMISAYVESDYPQEALRVFEEM-----CCSGIKPDVVSMFSVIS 352
Query: 334 ACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDN 393
AC +L + K+ I ++ + + N+YA + ++ KMP N
Sbjct: 353 ACANLGILDKA-KWVHSCIHVNGLESELSINNALINMYAKCGGLDATRDVFEKMPRRN-- 409
Query: 394 MSFESIMWVSLLSLCRFQG----AVAMVERLAKSFVDMDPQDF 432
+ W S+++ G A+++ R+ + V+ + F
Sbjct: 410 ----VVSWSSMINALSMHGEASDALSLFARMKQENVEPNEVTF 448
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 69/280 (24%), Positives = 127/280 (45%), Gaps = 18/280 (6%)
Query: 180 PERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGR 239
P ++V +N + S+S P ++ ++ + G R + + +L A + + EG
Sbjct: 73 PPESIV-FNPFLRDLSRSSEPRATILFYQRIRHVGGRLDQFSFLPILKAVSKVSALFEGM 131
Query: 240 SVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHG 299
+HG + + + ++T +D+Y+ C ++ A+ VFD M+ R++V WN MI +C G
Sbjct: 132 ELHGVAFKIATLCDPFVETGFMDMYASCGRINYARNVFDEMSHRDVVTWNTMIERYCRFG 191
Query: 300 KPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKP 359
+E KLF + + V PDE+ ++ AC R + R + +I+ ++
Sbjct: 192 LVDEAFKLFEEMKDSNVM-----PDEMILCNIVSACGRTGNMRYNRAIYEFLIE-NDVRM 245
Query: 360 NFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLC-RFQGAVAMVE 418
+ + +YAGA + A E RKM N F S VS S C R A + +
Sbjct: 246 DTHLLTALVTMYAGAGCMDMAREFFRKMSVRN---LFVSTAMVSGYSKCGRLDDAQVIFD 302
Query: 419 RLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELM 458
+ K +D + +++ Y + ++ RV E M
Sbjct: 303 QTEK-------KDLVCWTTMISAYVESDYPQEALRVFEEM 335
>gi|255584337|ref|XP_002532904.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223527338|gb|EEF29484.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 604
Score = 243 bits (620), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 149/511 (29%), Positives = 245/511 (47%), Gaps = 76/511 (14%)
Query: 38 DYTVLVFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSC 97
+ V VF I +P N +I+A+ + + + M KNG +++T+ L +C
Sbjct: 72 NLAVNVFNQIQDPNVHLYNTLIRAHVQNSQSLKAFATFFDMQKNGLFADNFTYPFLLKAC 131
Query: 98 AKTG---------C-VERGGMCHGLALKN------------GVDFELPVM---------- 125
G C VE+ G L + N GV++ + +
Sbjct: 132 NGKGWLPTVQMIHCHVEKYGFFGDLFVPNSLIDSYSKCGLLGVNYAMKLFMEMGEKDLVS 191
Query: 126 -NSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNV 184
NS+I G + AR +F +M+ RD +SWN+I+ G+V++G+MS A LF+ MPERNV
Sbjct: 192 WNSMIGGLVKAGDLGRARKLFDEMAERDAVSWNTILDGYVKAGEMSQAFNLFEKMPERNV 251
Query: 185 VSWN-------------------------------IMISGYSKSGNPGCSLKLFREMMKS 213
VSW+ I+ISG+++ G + L+ +M +
Sbjct: 252 VSWSTMVSGYCKTGDMEMARMLFDKMPFKNLVTWTIIISGFAEKGLAKEATTLYNQMEAA 311
Query: 214 GFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVA 273
G + +D T+ S+L AC S G+ VH + +K ++ + AL+D+Y+KC +V+ A
Sbjct: 312 GLKPDDGTLISILAACAESGLLVLGKKVHASIKKIRIKCSVNVSNALVDMYAKCGRVDKA 371
Query: 274 QRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVIC 333
+F+ M+ R+LV WN M+ G +HG E+ I+LF+ + PD++T I ++C
Sbjct: 372 LSIFNEMSMRDLVSWNCMLQGLAMHGHGEKAIQLFSKMQQ-----EGFKPDKVTLIAILC 426
Query: 334 ACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMP-EDND 392
AC A + +G YF M + I P+ HY CM +L EEA +++ MP E ND
Sbjct: 427 ACTHAGFVDQGLSYFNSMERDHGIVPHIEHYGCMIDLLGRGGRLEEAFRLVQSMPMEPND 486
Query: 393 NMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVA 452
++W +LL CR AV + E++ + ++ D Y L N++A AG W VA
Sbjct: 487 ------VIWGTLLGACRVHNAVPLAEKVLDRLITLEQSDPGNYSMLSNIFAAAGDWNSVA 540
Query: 453 RVRELMKKRRMGRMPGCRLVDLKEVVEKLKV 483
+R MK + + G ++L + V + V
Sbjct: 541 NMRLQMKSTGVQKPSGASSIELDDEVHEFTV 571
Score = 62.8 bits (151), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 55/242 (22%), Positives = 102/242 (42%), Gaps = 16/242 (6%)
Query: 152 DLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMM 211
DL ++S M+ A +F+ + + NV +N +I + ++ + F +M
Sbjct: 54 DLYVAPKLISAFSLCHQMNLAVNVFNQIQDPNVHLYNTLIRAHVQNSQSLKAFATFFDMQ 113
Query: 212 KSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQ--K 269
K+G ++ T +L AC + +H + + ++ + +LID YSKC
Sbjct: 114 KNGLFADNFTYPFLLKACNGKGWLPTVQMIHCHVEKYGFFGDLFVPNSLIDSYSKCGLLG 173
Query: 270 VEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFI 329
V A ++F M +++LV WN+MI G G KLF + D +++
Sbjct: 174 VNYAMKLFMEMGEKDLVSWNSMIGGLVKAGDLGRARKLFDEMA---------ERDAVSWN 224
Query: 330 GVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPE 389
++ V+A +++ F +M + N + M + Y E A + KMP
Sbjct: 225 TILDGYVKAGEMSQAFNLFEKMPE-----RNVVSWSTMVSGYCKTGDMEMARMLFDKMPF 279
Query: 390 DN 391
N
Sbjct: 280 KN 281
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 82/349 (23%), Positives = 138/349 (39%), Gaps = 84/349 (24%)
Query: 110 HGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVR-SGD 168
H +K + +L V LI+ + M+ A N+F Q+ ++ +N+++ HV+ S
Sbjct: 43 HAQIIKRNLHNDLYVAPKLISAFSLCHQMNLAVNVFNQIQDPNVHLYNTLIRAHVQNSQS 102
Query: 169 MSAAHELFD---------------IMPERNVVSW-----------------------NIM 190
+ A FD ++ N W N +
Sbjct: 103 LKAFATFFDMQKNGLFADNFTYPFLLKACNGKGWLPTVQMIHCHVEKYGFFGDLFVPNSL 162
Query: 191 ISGYSKSGNPGC--SLKLFREMMKSGFRGNDKTMASVLTA--CGRSAR-FNEGRSVHGYT 245
I YSK G G ++KLF EM + + + ++ A GR+ + F+E
Sbjct: 163 IDSYSKCGLLGVNYAMKLFMEMGEKDLVSWNSMIGGLVKAGDLGRARKLFDE------MA 216
Query: 246 VRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHC--------- 296
R ++ N ILD Y K ++ A +F+ M +RN+V W+ M+ G+C
Sbjct: 217 ERDAVSWNTILDG-----YVKAGEMSQAFNLFEKMPERNVVSWSTMVSGYCKTGDMEMAR 271
Query: 297 -----------------IHGKPEEGI-KLFTALVNGTVAGGSISPDEITFIGVICACVRA 338
I G E+G+ K T L N A G + PD+ T I ++ AC +
Sbjct: 272 MLFDKMPFKNLVTWTIIISGFAEKGLAKEATTLYNQMEAAG-LKPDDGTLISILAACAES 330
Query: 339 ELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKM 387
LL G+K I +IK + + ++YA ++A I +M
Sbjct: 331 GLLVLGKK-VHASIKKIRIKCSVNVSNALVDMYAKCGRVDKALSIFNEM 378
Score = 41.6 bits (96), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 24/101 (23%), Positives = 48/101 (47%), Gaps = 5/101 (4%)
Query: 235 FNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILG 294
FN + VH ++ +L ++ + LI +S C ++ +A VF+ + D N+ +N +I
Sbjct: 36 FNHIKEVHAQIIKRNLHNDLYVAPKLISAFSLCHQMNLAVNVFNQIQDPNVHLYNTLIRA 95
Query: 295 HCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICAC 335
H + + +K F + G + D T+ ++ AC
Sbjct: 96 HV---QNSQSLKAFATFFDMQKNG--LFADNFTYPFLLKAC 131
>gi|297596280|ref|NP_001042300.2| Os01g0197500 [Oryza sativa Japonica Group]
gi|255672971|dbj|BAF04214.2| Os01g0197500 [Oryza sativa Japonica Group]
Length = 906
Score = 243 bits (620), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 149/481 (30%), Positives = 243/481 (50%), Gaps = 56/481 (11%)
Query: 50 PG--TFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSL-------------- 93
PG TF NA+I AYS+ C PD + +M G P++ T+ +L
Sbjct: 408 PGRTTFHWNALISAYSSGCDPDAARDAFARMAAAGARPDAVTWTALLSAHARSGKHADVL 467
Query: 94 --FGSCAKTGC---------------------VERGGMCHGLALKNGV-DFELPVMNSLI 129
FG ++GC + +G HG + G+ L V NSLI
Sbjct: 468 QLFGEMQRSGCEGNAESMAVALSACPYAGDLALAKGKAIHGCGVVKGLMHGYLFVTNSLI 527
Query: 130 NMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHV------RSGDMSAAHELFDIMPERN 183
MYG G MD A+ F + ++ ++WN++++ + ++ D+ A E N
Sbjct: 528 CMYGKLGEMDDAKKAFRDATAKNTVTWNTLITSYAAARLCDKALDVLAQMEQIGGTVAPN 587
Query: 184 VVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHG 243
VVSW+ +I G++ SG+ +L+LFR M + N TMA+VL+AC GR +HG
Sbjct: 588 VVSWSAVIGGFASSGDTDRALELFRRMQQQWLSPNVVTMATVLSACVDLLALRLGRELHG 647
Query: 244 YTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEE 303
+ ++ L + +++ LI++Y+KC KV A++VFD M R+L+ WN+M+ G+ +HG +E
Sbjct: 648 HAMKAELDRHSLVENGLINMYAKCGKVSGARKVFDGMKTRDLISWNSMLAGYGMHGLCDE 707
Query: 304 GIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAH 363
+ LFT +AG ++ PD +TF+ V+ AC A +TEGR+ F +M+ +KI P+ H
Sbjct: 708 ALALFT-----DMAGATVEPDGVTFVAVLSACGHAGRVTEGRRLFDRMVRAHKISPSMEH 762
Query: 364 YWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKS 423
Y CM L A L +A E++ MP D +W +LL+ CR G AM E +
Sbjct: 763 YTCMVYLLGRAGLLRDASELVETMPVRPD-----LCVWGALLNSCRIHGDAAMAEATIAN 817
Query: 424 FVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLKEVVEKLKV 483
+ + Q + + N+YA+ G W++ +VR + K+ + + PG +++ V
Sbjct: 818 VLQSEDQSTGNHMLITNLYAMCGMWDESKKVRVMTKEAGLRKNPGQSWIEVDNKVVAFAA 877
Query: 484 G 484
G
Sbjct: 878 G 878
Score = 71.6 bits (174), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 57/241 (23%), Positives = 103/241 (42%), Gaps = 43/241 (17%)
Query: 159 IVSGHVRSGDMSAAHELFDIMPE-RNVVSWNIMISGYSKSGNPGCS-------------- 203
I++ + R G + A +FD MP R WN +IS YS +P +
Sbjct: 386 ILAAYSRLGRAADARRVFDAMPPGRTTFHWNALISAYSSGCDPDAARDAFARMAAAGARP 445
Query: 204 ---------------------LKLFREMMKSGFRGNDKTMASVLTACGRSA--RFNEGRS 240
L+LF EM +SG GN ++MA L+AC + +G++
Sbjct: 446 DAVTWTALLSAHARSGKHADVLQLFGEMQRSGCEGNAESMAVALSACPYAGDLALAKGKA 505
Query: 241 VHGYTVRTSLKPNIILDT-ALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHG 299
+HG V L + T +LI +Y K +++ A++ F +N V WN +I +
Sbjct: 506 IHGCGVVKGLMHGYLFVTNSLICMYGKLGEMDDAKKAFRDATAKNTVTWNTLITSYAAAR 565
Query: 300 KPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKP 359
++ + + + GG+++P+ +++ VI + + FR+M + + P
Sbjct: 566 LCDKALDVLAQMEQ---IGGTVAPNVVSWSAVIGGFASSGDTDRALELFRRMQQQW-LSP 621
Query: 360 N 360
N
Sbjct: 622 N 622
Score = 41.6 bits (96), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 39/174 (22%), Positives = 69/174 (39%), Gaps = 10/174 (5%)
Query: 180 PERNVVSWNIMISGYSKSGNPGCSLKLFREMMK-SGFRGNDKTMASVLTACGRSARFNEG 238
P + V WN ++ + +L L+R M S N T+ L A +A
Sbjct: 308 PTTSAVPWNRLLRAHLGRSRGDLALALYRRMRALSPALPNSYTLPLALRA---AASPRVA 364
Query: 239 RSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMAD-RNLVCWNAMILGHCI 297
+VH + + L + ++ YS+ + A+RVFD+M R WNA+I +
Sbjct: 365 SAVHAHALHLGLHAQHDVAGQILAAYSRLGRAADARRVFDAMPPGRTTFHWNALISAYSS 424
Query: 298 HGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQM 351
P+ F + PD +T+ ++ A R+ + + F +M
Sbjct: 425 GCDPDAARDAFARMAAAGA-----RPDAVTWTALLSAHARSGKHADVLQLFGEM 473
>gi|356560406|ref|XP_003548483.1| PREDICTED: pentatricopeptide repeat-containing protein At3g26630,
chloroplastic-like [Glycine max]
Length = 483
Score = 243 bits (619), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 138/408 (33%), Positives = 208/408 (50%), Gaps = 16/408 (3%)
Query: 2 KQLLQIQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKA 61
KQL Q+ +I GL ++ L++ S+ +G Y LVF +N P F N +I+A
Sbjct: 39 KQLKQVHGKIIRFGLTYDQLLMR-KLIQLSSSYGKMKYATLVFDQLNAPDVFTWNVMIRA 97
Query: 62 YSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFE 121
++ P ++ + M+ GF P+ +T+ + +C + ++ G + H LA+K G +
Sbjct: 98 FTIGGSPKMALLLFKAMLCQGFAPDKFTYPFVINACMASSALDLGIVAHALAIKMGFWGD 157
Query: 122 LPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPE 181
L V N+++N+Y +D R +F +M R++ +W +++SG V G + A ELF+ MP
Sbjct: 158 LYVQNTMMNLYFKCENVDDGRKVFDKMRVRNVFAWTTVISGLVACGKLDTARELFEQMPS 217
Query: 182 RNVVSWNIMISGYSKSGNPGCSLKLFREMMK-SGFRGNDKTMASVLTACGRSARFNEGRS 240
+NVVSW MI GY K P + LF M + R N+ T+ S++ AC GR
Sbjct: 218 KNVVSWTAMIDGYVKHKQPIEAFNLFERMQQVDNVRPNEYTLVSLVRACTEMGSLKLGRR 277
Query: 241 VHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGK 300
VH + ++ + L TALID+YSKC ++ A+ VFD M R L WN MI +HG
Sbjct: 278 VHDFALKNGFELEPFLGTALIDMYSKCGYLDDARTVFDMMQVRTLATWNTMITSLGVHGY 337
Query: 301 PEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPN 360
+E + LF + PD ITF+GV+ ACV L +KYF M D Y I P
Sbjct: 338 RDEALSLFDEMEKANEV-----PDAITFVGVLSACVYMNDLELAQKYFNLMTDHYGITPI 392
Query: 361 FAHYWCMANLYAGA-ELTE--------EAEEILRKMPEDNDNMSFESI 399
HY CM +Y A EL E EA + ++ N SF+ I
Sbjct: 393 LEHYTCMVEIYTRAIELDENYTSGNTMEANHDVAELLHKNKLTSFDDI 440
Score = 58.5 bits (140), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 68/304 (22%), Positives = 119/304 (39%), Gaps = 74/304 (24%)
Query: 226 LTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNL 285
L + + F + + VHG +R L + +L LI L S K++ A VFD + ++
Sbjct: 29 LVLLQKCSNFKQLKQVHGKIIRFGLTYDQLLMRKLIQLSSSYGKMKYATLVFDQLNAPDV 88
Query: 286 VCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEG- 344
WN MI I G P+ + LF A++ A PD+ T+ VI AC+ + L G
Sbjct: 89 FTWNVMIRAFTIGGSPKMALLLFKAMLCQGFA-----PDKFTYPFVINACMASSALDLGI 143
Query: 345 ----------------------RKYF--------RQMIDFYKIKPNFAHYWCMANLYAGA 374
YF R++ D +++ FA ++ L A
Sbjct: 144 VAHALAIKMGFWGDLYVQNTMMNLYFKCENVDDGRKVFDKMRVRNVFAWTTVISGLVACG 203
Query: 375 ELTEEAEEILRKMPEDN------------------------------DNMSFESIMWVSL 404
+L + A E+ +MP N DN+ VSL
Sbjct: 204 KL-DTARELFEQMPSKNVVSWTAMIDGYVKHKQPIEAFNLFERMQQVDNVRPNEYTLVSL 262
Query: 405 LSLCRFQGAVAMVERL----AKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKK 460
+ C G++ + R+ K+ +++P + L+++Y+ G +D V ++M+
Sbjct: 263 VRACTEMGSLKLGRRVHDFALKNGFELEPFLGTA---LIDMYSKCGYLDDARTVFDMMQV 319
Query: 461 RRMG 464
R +
Sbjct: 320 RTLA 323
>gi|115446651|ref|NP_001047105.1| Os02g0552100 [Oryza sativa Japonica Group]
gi|46389885|dbj|BAD15486.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
gi|113536636|dbj|BAF09019.1| Os02g0552100 [Oryza sativa Japonica Group]
gi|125582482|gb|EAZ23413.1| hypothetical protein OsJ_07107 [Oryza sativa Japonica Group]
gi|215712305|dbj|BAG94432.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 586
Score = 243 bits (619), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 134/365 (36%), Positives = 207/365 (56%), Gaps = 15/365 (4%)
Query: 124 VMNSLINMYGCFGAMDCARN-MFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPER 182
V NSL+ +Y G +D AR ++ + D++SWN++VSG+ + GD+ AA E+F MPER
Sbjct: 115 VTNSLLKLYCSLGLLDRARRVLYSGGAALDVVSWNTMVSGYGKGGDLGAAREVFARMPER 174
Query: 183 NVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVH 242
N+VSW+ M+ ++G G +L +F MM+ FR + + SVL AC GR VH
Sbjct: 175 NLVSWSAMVDACVRAGEFGEALWVFDRMMREEFRPDVVVLVSVLKACAHLGAVERGRWVH 234
Query: 243 GYTVRTSL---KPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHG 299
Y S + N++L+TAL+D+Y KC +E A +VFD + R++V WNAMI G ++G
Sbjct: 235 RYLETGSFGGRRGNLMLETALVDMYCKCGCMEDAWQVFDGVHRRDVVLWNAMIGGLAMNG 294
Query: 300 KPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKP 359
E ++LF ++ P+E TFI V+CAC + EG++ F+ M D Y IKP
Sbjct: 295 YGERALELFRRMLQ-----KGFMPNESTFIAVLCACTHTGRVDEGKRVFKSMQD-YGIKP 348
Query: 360 NFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVER 419
HY C+A+L A EEAE +L MP M + W +L+S C+ + + ER
Sbjct: 349 QREHYGCLADLLGRAGNVEEAEALLLDMP-----MEPHASQWGALMSSCQMHNDINVGER 403
Query: 420 LAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLKEVVE 479
+ K ++++P D RY L N+YAV G+WE+ +R++M+ R + G ++L +V
Sbjct: 404 VGKRLIELEPYDGGRYVVLFNLYAVNGRWEEARTIRQMMEDRGAKKETGLSFIELNGLVH 463
Query: 480 KLKVG 484
+ G
Sbjct: 464 EFISG 468
Score = 44.3 bits (103), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 49/212 (23%), Positives = 90/212 (42%), Gaps = 16/212 (7%)
Query: 43 VFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGC 102
VF ++ NA+I + + ++ + + +M++ GFMPN TF+++ +C TG
Sbjct: 271 VFDGVHRRDVVLWNAMIGGLAMNGYGERALELFRRMLQKGFMPNESTFIAVLCACTHTGR 330
Query: 103 VERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLIS-WNSIVS 161
V+ G G+ + L ++ G G ++ A + + M S W +++S
Sbjct: 331 VDEGKRVFKSMQDYGIKPQREHYGCLADLLGRAGNVEEAEALLLDMPMEPHASQWGALMS 390
Query: 162 GHVRSGDMSAAH----ELFDIMPE---RNVVSWNIMISGYSKSGNPGCSLKLFREMMKSG 214
D++ L ++ P R VV +N+ Y+ +G + R+MM+
Sbjct: 391 SCQMHNDINVGERVGKRLIELEPYDGGRYVVLFNL----YAVNGRWE-EARTIRQMMED- 444
Query: 215 FRGNDK-TMASVLTACGRSARFNEGRSVHGYT 245
RG K T S + G F G + H T
Sbjct: 445 -RGAKKETGLSFIELNGLVHEFISGDTRHPLT 475
>gi|125539857|gb|EAY86252.1| hypothetical protein OsI_07623 [Oryza sativa Indica Group]
Length = 629
Score = 243 bits (619), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 134/365 (36%), Positives = 207/365 (56%), Gaps = 15/365 (4%)
Query: 124 VMNSLINMYGCFGAMDCARN-MFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPER 182
V NSL+ +Y G +D AR ++ + D++SWN++VSG+ + GD+ AA E+F MPER
Sbjct: 115 VTNSLLKLYCSLGLIDRARRVLYSGGAALDVVSWNTMVSGYGKGGDLGAAREVFARMPER 174
Query: 183 NVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVH 242
N+VSW+ M+ ++G G +L +F MM+ FR + + SVL AC GR VH
Sbjct: 175 NLVSWSAMVDACVRAGEFGEALWVFDRMMREEFRPDVVVLVSVLKACAHLGAVERGRWVH 234
Query: 243 GYTVRTSL---KPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHG 299
Y S + N++L+TAL+D+Y KC +E A +VFD + R++V WNAMI G ++G
Sbjct: 235 RYLETGSFGGRRGNLMLETALVDMYCKCGCMEDAWQVFDGVHRRDVVLWNAMIGGLAMNG 294
Query: 300 KPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKP 359
E ++LF ++ P+E TFI V+CAC + EG++ F+ M D Y IKP
Sbjct: 295 YGERALELFRRMLQ-----KGFMPNESTFIAVLCACTHTGRVDEGKRVFKSMQD-YGIKP 348
Query: 360 NFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVER 419
HY C+A+L A EEAE +L MP M + W +L+S C+ + + ER
Sbjct: 349 QREHYGCLADLLGRAGNVEEAEALLLDMP-----MEPHASQWGALMSSCQMHNDINVGER 403
Query: 420 LAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLKEVVE 479
+ K ++++P D RY L N+YAV G+WE+ +R++M+ R + G ++L +V
Sbjct: 404 VGKRLIELEPYDGGRYVVLFNLYAVNGRWEEARTIRQMMEDRGAKKETGLSFIELNGLVH 463
Query: 480 KLKVG 484
+ G
Sbjct: 464 EFISG 468
Score = 43.9 bits (102), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 27/120 (22%), Positives = 55/120 (45%), Gaps = 1/120 (0%)
Query: 43 VFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGC 102
VF ++ NA+I + + ++ + + +M++ GFMPN TF+++ +C TG
Sbjct: 271 VFDGVHRRDVVLWNAMIGGLAMNGYGERALELFRRMLQKGFMPNESTFIAVLCACTHTGR 330
Query: 103 VERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLIS-WNSIVS 161
V+ G G+ + L ++ G G ++ A + + M S W +++S
Sbjct: 331 VDEGKRVFKSMQDYGIKPQREHYGCLADLLGRAGNVEEAEALLLDMPMEPHASQWGALMS 390
>gi|356567054|ref|XP_003551738.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g15300-like [Glycine max]
Length = 518
Score = 243 bits (619), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 157/509 (30%), Positives = 237/509 (46%), Gaps = 49/509 (9%)
Query: 4 LLQIQAHLITSGLFFNNSFWTINLLKHSADFGSPD-------YTVLVFKCINNPGTFCVN 56
L QI A +I +GL N F +L + P+ Y + +F I P TF N
Sbjct: 17 LKQIHALMIVNGLTSNVGFLRKLVLTTAMSMVGPNATSAVIRYALQMFAQIPQPDTFMWN 76
Query: 57 AVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKN 116
I+ S S P V Y QM + P+++TF + +C K V G HG L+
Sbjct: 77 TYIRGSSQSHDPVHAVALYAQMDQRSVKPDNFTFPFVLKACTKLFWVNTGSAVHGRVLRL 136
Query: 117 GVDFELPVMNSL-------------------------------INMYGCFGAMDCARNMF 145
G + V N+L I Y G + AR +F
Sbjct: 137 GFGSNVVVRNTLLVFHAKCGDLKVATDIFDDSDKGDVVAWSALIAGYAQRGDLSVARKLF 196
Query: 146 VQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLK 205
+M RDL+SWN +++ + + G+M +A LFD P +++VSWN +I GY +L+
Sbjct: 197 DEMPKRDLVSWNVMITVYTKHGEMESARRLFDEAPMKDIVSWNALIGGYVLRNLNREALE 256
Query: 206 LFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSL-KPNIILDTALIDLY 264
LF EM G ++ TM S+L+AC G VH + + K + +L AL+D+Y
Sbjct: 257 LFDEMCGVGECPDEVTMLSLLSACADLGDLESGEKVHAKIIEMNKGKLSTLLGNALVDMY 316
Query: 265 SKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPD 324
+KC + A RVF + D+++V WN++I G HG EE + LF + V PD
Sbjct: 317 AKCGNIGKAVRVFWLIRDKDVVSWNSVISGLAFHGHAEESLGLFREMKMTKVC-----PD 371
Query: 325 EITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEIL 384
E+TF+GV+ AC A + EG +YF M + YKI+P H C+ ++ A L +EA +
Sbjct: 372 EVTFVGVLAACSHAGNVDEGNRYFHLMKNKYKIEPTIRHCGCVVDMLGRAGLLKEAFNFI 431
Query: 385 RKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAV 444
M + +I+W SLL C+ G V + +R + + M Y L NVYA
Sbjct: 432 ASM-----KIEPNAIVWRSLLGACKVHGDVELAKRANEQLLRMRGDQSGDYVLLSNVYAS 486
Query: 445 AGQWEDVARVRELMKKRRMGRMPGCRLVD 473
G+W+ VR+LM + + G V+
Sbjct: 487 QGEWDGAENVRKLMDDNGVTKNRGSSFVE 515
>gi|356530090|ref|XP_003533617.1| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
mitochondrial-like [Glycine max]
Length = 566
Score = 243 bits (619), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 124/371 (33%), Positives = 213/371 (57%), Gaps = 15/371 (4%)
Query: 115 KNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHE 174
+N V+ ++ + N+LI+MYG G + AR +F QM R+L+SWN+++ G+ ++G++ AA E
Sbjct: 206 ENNVEIDVYLGNTLIDMYGRRGLVHLARGVFDQMQWRNLVSWNAMIMGYGKAGNLVAARE 265
Query: 175 LFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSAR 234
LFD M +R+V+SW MI+ YS++G +L+LF+EMM+S + ++ T+ASVL+AC +
Sbjct: 266 LFDAMSQRDVISWTNMITSYSQAGQFTEALRLFKEMMESKVKPDEITVASVLSACAHTGS 325
Query: 235 FNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILG 294
+ G + H Y + +K +I + ALID+Y KC VE A VF M ++ V W ++I G
Sbjct: 326 LDVGEAAHDYIQKYDVKADIYVGNALIDMYCKCGVVEKALEVFKEMRKKDSVSWTSIISG 385
Query: 295 HCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDF 354
++G + + F+ ++ V P F+G++ AC A L+ +G +YF M
Sbjct: 386 LAVNGFADSALDYFSRMLREVV-----QPSHGAFVGILLACAHAGLVDKGLEYFESMEKV 440
Query: 355 YKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAV 414
Y +KP HY C+ +L + + + A E +++MP D ++W LLS + G +
Sbjct: 441 YGLKPEMKHYGCVVDLLSRSGNLQRAFEFIKEMPVTPD-----VVIWRILLSASQVHGNI 495
Query: 415 AMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDL 474
+ E K +++DP + Y N YA + +WED ++RELM+K + + G +++
Sbjct: 496 PLAEIATKKLLELDPSNSGNYVLSSNTYAGSNRWEDAVKMRELMEKSNVQKPSGSSCIEM 555
Query: 475 KEVVEKLKVGH 485
+L+ GH
Sbjct: 556 -----ELQNGH 561
Score = 142 bits (359), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 108/390 (27%), Positives = 172/390 (44%), Gaps = 64/390 (16%)
Query: 43 VFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGC 102
+F+ I+ P N +I+ +S S P++ + Y M + G + N+ T++ LF +CA+
Sbjct: 33 LFQQIHRPTLPFWNIMIRGWSVSDQPNEAIRMYNLMYRQGLLGNNLTYLFLFKACARVPD 92
Query: 103 VERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSG 162
V G H LK G + L V N+LINMYG G + A+ +F +M RDL+SWNS+V G
Sbjct: 93 VSCGSTIHARVLKLGFESHLYVSNALINMYGSCGHLGLAQKVFDEMPERDLVSWNSLVCG 152
Query: 163 HVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTM 222
+ G E+ L +F M +G +G+ TM
Sbjct: 153 Y---GQCKRFREV----------------------------LGVFEAMRVAGVKGDAVTM 181
Query: 223 ASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMAD 282
V+ AC + ++ Y +++ ++ L LID+Y + V +A+ VFD M
Sbjct: 182 VKVVLACTSLGEWGVADAMVDYIEENNVEIDVYLGNTLIDMYGRRGLVHLARGVFDQMQW 241
Query: 283 RNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTV------------AG------------ 318
RNLV WNAMI+G+ G +LF A+ V AG
Sbjct: 242 RNLVSWNAMIMGYGKAGNLVAARELFDAMSQRDVISWTNMITSYSQAGQFTEALRLFKEM 301
Query: 319 --GSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAEL 376
+ PDEIT V+ AC L G I Y +K + + ++Y +
Sbjct: 302 MESKVKPDEITVASVLSACAHTGSLDVGEAA-HDYIQKYDVKADIYVGNALIDMYCKCGV 360
Query: 377 TEEAEEILRKMPEDNDNMSFESIMWVSLLS 406
E+A E+ ++M + +S+ W S++S
Sbjct: 361 VEKALEVFKEMRKK------DSVSWTSIIS 384
Score = 100 bits (249), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 54/180 (30%), Positives = 96/180 (53%), Gaps = 5/180 (2%)
Query: 156 WNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGF 215
+N I S + + AH LF + + WNIMI G+S S P +++++ M + G
Sbjct: 14 YNLIKSYALSPSTILKAHNLFQQIHRPTLPFWNIMIRGWSVSDQPNEAIRMYNLMYRQGL 73
Query: 216 RGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQR 275
GN+ T + AC R + G ++H ++ + ++ + ALI++Y C + +AQ+
Sbjct: 74 LGNNLTYLFLFKACARVPDVSCGSTIHARVLKLGFESHLYVSNALINMYGSCGHLGLAQK 133
Query: 276 VFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICAC 335
VFD M +R+LV WN+++ G+ + E + +F A+ VAG + D +T + V+ AC
Sbjct: 134 VFDEMPERDLVSWNSLVCGYGQCKRFREVLGVFEAM---RVAG--VKGDAVTMVKVVLAC 188
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 54/259 (20%), Positives = 109/259 (42%), Gaps = 33/259 (12%)
Query: 43 VFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGC 102
+F ++ +I +YS + + + + +M+++ P+ T S+ +CA TG
Sbjct: 266 LFDAMSQRDVISWTNMITSYSQAGQFTEALRLFKEMMESKVKPDEITVASVLSACAHTGS 325
Query: 103 VERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSG 162
++ G H K V ++ V N+LI+MY G ++ A +F +M +D +SW SI+SG
Sbjct: 326 LDVGEAAHDYIQKYDVKADIYVGNALIDMYCKCGVVEKALEVFKEMRKKDSVSWTSIISG 385
Query: 163 HVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTM 222
+ ++G++ S +L F M++ + +
Sbjct: 386 --------------------------LAVNGFADS-----ALDYFSRMLREVVQPSHGAF 414
Query: 223 ASVLTACGRSARFNEGRSVHGYTVRT-SLKPNIILDTALIDLYSKCQKVEVAQRVFDSM- 280
+L AC + ++G + LKP + ++DL S+ ++ A M
Sbjct: 415 VGILLACAHAGLVDKGLEYFESMEKVYGLKPEMKHYGCVVDLLSRSGNLQRAFEFIKEMP 474
Query: 281 ADRNLVCWNAMILGHCIHG 299
++V W ++ +HG
Sbjct: 475 VTPDVVIWRILLSASQVHG 493
>gi|15228653|ref|NP_189568.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75273910|sp|Q9LS72.1|PP261_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g29230
gi|9293916|dbj|BAB01819.1| unnamed protein product [Arabidopsis thaliana]
gi|332644032|gb|AEE77553.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 600
Score = 243 bits (619), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 149/512 (29%), Positives = 243/512 (47%), Gaps = 76/512 (14%)
Query: 38 DYTVLVFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSC 97
+ V VF + P N++I+A++ + P Q + +M + G +++T+ L +C
Sbjct: 68 NLAVRVFNQVQEPNVHLCNSLIRAHAQNSQPYQAFFVFSEMQRFGLFADNFTYPFLLKAC 127
Query: 98 AKTGCVERGGMCHGLALKNGVDFELPVMNSLINMY---GCFGAMDC-------------- 140
+ + M H K G+ ++ V N+LI+ Y G G D
Sbjct: 128 SGQSWLPVVKMMHNHIEKLGLSSDIYVPNALIDCYSRCGGLGVRDAMKLFEKMSERDTVS 187
Query: 141 ----------------ARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNV 184
AR +F +M RDLISWN+++ G+ R +MS A ELF+ MPERN
Sbjct: 188 WNSMLGGLVKAGELRDARRLFDEMPQRDLISWNTMLDGYARCREMSKAFELFEKMPERNT 247
Query: 185 VSWNIMISGYSKSGN-------------PGCSL--------------------KLFREMM 211
VSW+ M+ GYSK+G+ P ++ +L +M+
Sbjct: 248 VSWSTMVMGYSKAGDMEMARVMFDKMPLPAKNVVTWTIIIAGYAEKGLLKEADRLVDQMV 307
Query: 212 KSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVE 271
SG + + + S+L AC S + G +H R++L N + AL+D+Y+KC ++
Sbjct: 308 ASGLKFDAAAVISILAACTESGLLSLGMRIHSILKRSNLGSNAYVLNALLDMYAKCGNLK 367
Query: 272 VAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGV 331
A VF+ + ++LV WN M+ G +HG +E I+LF+ + I PD++TFI V
Sbjct: 368 KAFDVFNDIPKKDLVSWNTMLHGLGVHGHGKEAIELFSRMRR-----EGIRPDKVTFIAV 422
Query: 332 ICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDN 391
+C+C A L+ EG YF M Y + P HY C+ +L +EA ++++ MP
Sbjct: 423 LCSCNHAGLIDEGIDYFYSMEKVYDLVPQVEHYGCLVDLLGRVGRLKEAIKVVQTMP--- 479
Query: 392 DNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDV 451
M ++W +LL CR V + + + + V +DP D Y L N+YA A WE V
Sbjct: 480 --MEPNVVIWGALLGACRMHNEVDIAKEVLDNLVKLDPCDPGNYSLLSNIYAAAEDWEGV 537
Query: 452 ARVRELMKKRRMGRMPGCRLVDLKEVVEKLKV 483
A +R MK + + G V+L++ + + V
Sbjct: 538 ADIRSKMKSMGVEKPSGASSVELEDGIHEFTV 569
Score = 43.5 bits (101), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 49/234 (20%), Positives = 98/234 (41%), Gaps = 19/234 (8%)
Query: 231 RSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNA 290
+ A N+ + +H +R +L ++ + LI S C++ +A RVF+ + + N+ N+
Sbjct: 28 KCANLNQVKQLHAQIIRRNLHEDLHIAPKLISALSLCRQTNLAVRVFNQVQEPNVHLCNS 87
Query: 291 MILGHCIHGKPEEGIKLFTALVN-GTVAGGSISPDEITFIGVICACVRAELLTEGRKYFR 349
+I H + +P + +F+ + G A D T+ ++ AC L K
Sbjct: 88 LIRAHAQNSQPYQAFFVFSEMQRFGLFA------DNFTYPFLLKACSGQSWLPV-VKMMH 140
Query: 350 QMIDFYKIKPNFAHYWCMANLYA--GAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSL 407
I+ + + + + Y+ G +A ++ KM E +++ W S+L
Sbjct: 141 NHIEKLGLSSDIYVPNALIDCYSRCGGLGVRDAMKLFEKMSER------DTVSWNSMLGG 194
Query: 408 CRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKR 461
G + RL F +M +D + +L+ YA + + E M +R
Sbjct: 195 LVKAGELRDARRL---FDEMPQRDLISWNTMLDGYARCREMSKAFELFEKMPER 245
>gi|147798405|emb|CAN70142.1| hypothetical protein VITISV_032085 [Vitis vinifera]
Length = 748
Score = 243 bits (619), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 135/411 (32%), Positives = 214/411 (52%), Gaps = 42/411 (10%)
Query: 56 NAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALK 115
NA+I Y+ S ++ + F+ +M + PN T V++ +CA++G +E G
Sbjct: 233 NAMIAGYAQSGRFEEALAFFQEMKRANVAPNESTMVTVLSACAQSGSLELGNWVRSWIED 292
Query: 116 NGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHEL 175
+G+ L ++N+LI+MY + GD+ A +L
Sbjct: 293 HGLGSNLRLVNALIDMYS-------------------------------KCGDLDKARDL 321
Query: 176 FDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARF 235
F+ + E++++SWN+MI GYS + +L LFR+M +S ND T S+L AC
Sbjct: 322 FEGICEKDIISWNVMIGGYSHMNSYKEALALFRKMQQSNVEPNDVTFVSILPACAYLGAL 381
Query: 236 NEGRSVHGYTVRTSLK-PNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILG 294
+ G+ +H Y + L N L T+LID+Y+KC +E A++VF M ++L WNAMI G
Sbjct: 382 DLGKWIHAYIDKKFLGLTNTSLWTSLIDMYAKCGNIEAAKQVFAGMKPKSLGSWNAMISG 441
Query: 295 HCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDF 354
+HG ++LF + + PD+ITF+GV+ AC A L+ GR+ F M++
Sbjct: 442 LAMHGHANMALELFRQMRDE-----GFEPDDITFVGVLSACSHAGLVELGRQCFSSMVED 496
Query: 355 YKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAV 414
Y I P HY CM +L A L +EAE +++ M M + +W SLL CR G V
Sbjct: 497 YDISPKLQHYGCMIDLLGRAGLFDEAEALMKNM-----EMKPDGAIWGSLLGACRVHGNV 551
Query: 415 AMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGR 465
+ E AK +++P++ Y L N+YA AG+W+DVAR+R + + M +
Sbjct: 552 ELGEFAAKHLFELEPENPGAYVLLSNIYATAGRWDDVARIRTKLNDKGMKK 602
Score = 217 bits (553), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 154/522 (29%), Positives = 253/522 (48%), Gaps = 51/522 (9%)
Query: 2 KQLLQIQAHLITSGLFFNNSFWTINLLKHSA--DFGSPDYTVLVFKCINNPGTFCVNAVI 59
+ L QI + +I +GL N F L++ A FG+ Y +L+F+ I P F N +I
Sbjct: 46 QNLKQIHSQIIKTGLH-NTQFALSKLIEFCAISPFGNLSYALLLFESIEQPNQFIWNTMI 104
Query: 60 KAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVD 119
+ S S P + FY++M+ G PNSYTF L SCAK G + G HG LK G++
Sbjct: 105 RGNSLSSSPVGAIDFYVRMLLCGVEPNSYTFPFLLKSCAKVGATQEGKQIHGHVLKLGLE 164
Query: 120 FELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIM 179
+ V SLINMY G + A +F + S RD +S+ ++++G+ G + A LF+ +
Sbjct: 165 SDPFVHTSLINMYAQNGELGYAELVFSKSSLRDAVSFTALITGYTLRGCLDDARRLFEEI 224
Query: 180 PERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGR 239
P R+ VSWN MI+GY++SG +L F+EM ++ N+ TM +VL+AC +S G
Sbjct: 225 PVRDAVSWNAMIAGYAQSGRFEEALAFFQEMKRANVAPNESTMVTVLSACAQSGSLELGN 284
Query: 240 SVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHG 299
V + L N+ L ALID+YSKC ++ A+ +F+ + +++++ WN MI G+
Sbjct: 285 WVRSWIEDHGLGSNLRLVNALIDMYSKCGDLDKARDLFEGICEKDIISWNVMIGGYSHMN 344
Query: 300 KPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKP 359
+E + LF + V P+++TF+ ++ AC L G K+ ID +
Sbjct: 345 SYKEALALFRKMQQSNV-----EPNDVTFVSILPACAYLGALDLG-KWIHAYIDKKFLGL 398
Query: 360 NFAHYWC-MANLYAGAELTEEAEEILRKMP----------------EDNDNMSFE----- 397
W + ++YA E A+++ M + NM+ E
Sbjct: 399 TNTSLWTSLIDMYAKCGNIEAAKQVFAGMKPKSLGSWNAMISGLAMHGHANMALELFRQM 458
Query: 398 --------SIMWVSLLSLCRFQGAVAMVERLAKSFV---DMDPQDFSRYQFLLNVYAVAG 446
I +V +LS C G V + + S V D+ P+ Y ++++ AG
Sbjct: 459 RDEGFEPDDITFVGVLSACSHAGLVELGRQCFSSMVEDYDISPK-LQHYGCMIDLLGRAG 517
Query: 447 QWEDVARVRELMKKRRMGRMPG-----CRL---VDLKEVVEK 480
+++ + + M+ + G + G CR+ V+L E K
Sbjct: 518 LFDEAEALMKNMEMKPDGAIWGSLLGACRVHGNVELGEFAAK 559
>gi|224107977|ref|XP_002314675.1| predicted protein [Populus trichocarpa]
gi|222863715|gb|EEF00846.1| predicted protein [Populus trichocarpa]
Length = 845
Score = 242 bits (618), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 136/451 (30%), Positives = 230/451 (50%), Gaps = 12/451 (2%)
Query: 35 GSPDYTVLVFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLF 94
G+ D +F + N ++ Y + + + +M+K+G P+ T +S
Sbjct: 289 GAIDKARKIFDECVDKNLVLYNTIMSNYVRQGLAREVLAVLGEMLKHGPRPDRITMLSAV 348
Query: 95 GSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLI 154
+C++ V G CHG L+NG++ V N++INMY G + A +F +M + +
Sbjct: 349 SACSELDDVSCGKWCHGYVLRNGLEGWDNVCNAIINMYMKCGKQEMACRVFDRMLNKTRV 408
Query: 155 SWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSG 214
SWNS+++G VR+GDM +A ++F MP+ ++VSWN MI + +++LFR M G
Sbjct: 409 SWNSLIAGFVRNGDMESAWKIFSAMPDSDLVSWNTMIGALVQESMFKEAIELFRVMQSEG 468
Query: 215 FRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQ 274
+ TM V +ACG + + +HGY + + ++ L TAL+D++++C + A
Sbjct: 469 ITADKVTMVGVASACGYLGALDLAKWIHGYIKKKDIHFDMHLGTALVDMFARCGDPQSAM 528
Query: 275 RVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICA 334
+VF+ M R++ W A I + G I+LF ++ I PD + F+ ++ A
Sbjct: 529 QVFNKMVKRDVSAWTAAIGAMAMEGNGTGAIELFDEMLQ-----QGIKPDGVVFVALLTA 583
Query: 335 CVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMP-EDNDN 393
L+ +G FR M D Y I P HY CM +L A L EA ++ M E ND
Sbjct: 584 LSHGGLVEQGWHIFRSMKDIYGIAPQAVHYGCMVDLLGRAGLLSEALSLINSMQMEPND- 642
Query: 394 MSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVAR 453
++W SLL+ CR V + A+ ++DP+ + L N+YA AG+W+DVA+
Sbjct: 643 -----VIWGSLLAACRVHKNVDIAAYAAERISELDPERTGIHVLLSNIYASAGRWDDVAK 697
Query: 454 VRELMKKRRMGRMPGCRLVDLKEVVEKLKVG 484
VR +K++ +MPG +++ + + G
Sbjct: 698 VRLHLKEKGAHKMPGSSSIEINGKIFEFTTG 728
Score = 135 bits (340), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 93/353 (26%), Positives = 165/353 (46%), Gaps = 45/353 (12%)
Query: 1 MKQLLQIQAHLITSGLFFNNSFWTINLLKHSADFG---SPDYTVLVFKC-INNPGT---- 52
M +L Q+ + + +GL ++ NL+ + G S +Y + I + G
Sbjct: 46 MTELKQLHSQITKNGLN-HHPLSLTNLISSCTEMGTFESLEYAQKALELFIEDNGIMGTH 104
Query: 53 FCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGL 112
+ +++I+ +S + + +V + Q++ G +P+++TF + +C K+ + G HG
Sbjct: 105 YMFSSLIRGFSACGLGYKAIVVFRQLMCMGAVPDNFTFPFVLSACTKSAALTEGFQVHGA 164
Query: 113 ALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAA 172
+K G + ++ V NSLI+ YG G +DC R
Sbjct: 165 IVKMGFERDMFVENSLIHFYGECGEIDCMR------------------------------ 194
Query: 173 HELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRS 232
+FD M ERNVVSW +I GY+K G ++ LF EM++ G R N TM V++AC +
Sbjct: 195 -RVFDKMSERNVVSWTSLIGGYAKRGCYKEAVSLFFEMVEVGIRPNSVTMVGVISACAKL 253
Query: 233 ARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMI 292
G V L+ N ++ AL+D+Y KC ++ A+++FD D+NLV +N ++
Sbjct: 254 QDLQLGEQVCTCIGELELEVNALMVNALVDMYMKCGAIDKARKIFDECVDKNLVLYNTIM 313
Query: 293 LGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGR 345
+ G E + + G + PD IT + + AC + ++ G+
Sbjct: 314 SNYVRQGLAREVLAVL-----GEMLKHGPRPDRITMLSAVSACSELDDVSCGK 361
Score = 116 bits (291), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 90/347 (25%), Positives = 160/347 (46%), Gaps = 41/347 (11%)
Query: 5 LQIQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSN 64
Q+ ++ G F + F +L+ + G D VF ++ ++I Y+
Sbjct: 159 FQVHGAIVKMG-FERDMFVENSLIHFYGECGEIDCMRRVFDKMSERNVVSWTSLIGGYAK 217
Query: 65 SCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPV 124
+ V + +M++ G PNS T V + +CAK ++ G + ++ +
Sbjct: 218 RGCYKEAVSLFFEMVEVGIRPNSVTMVGVISACAKLQDLQLGEQVCTCIGELELEVNALM 277
Query: 125 MNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNV 184
+N+L++MY GA+D AR +F + ++L+ +N+I+S +VR G A E+
Sbjct: 278 VNALVDMYMKCGAIDKARKIFDECVDKNLVLYNTIMSNYVRQG---LAREV--------- 325
Query: 185 VSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGY 244
L + EM+K G R + TM S ++AC + G+ HGY
Sbjct: 326 -------------------LAVLGEMLKHGPRPDRITMLSAVSACSELDDVSCGKWCHGY 366
Query: 245 TVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEG 304
+R L+ + A+I++Y KC K E+A RVFD M ++ V WN++I G +G E
Sbjct: 367 VLRNGLEGWDNVCNAIINMYMKCGKQEMACRVFDRMLNKTRVSWNSLIAGFVRNGDMESA 426
Query: 305 IKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQM 351
K+F+A+ + D +++ +I A V+ + E + FR M
Sbjct: 427 WKIFSAMPD---------SDLVSWNTMIGALVQESMFKEAIELFRVM 464
>gi|449435340|ref|XP_004135453.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g02980-like [Cucumis sativus]
gi|449478665|ref|XP_004155385.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g02980-like [Cucumis sativus]
Length = 604
Score = 242 bits (618), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 149/486 (30%), Positives = 237/486 (48%), Gaps = 43/486 (8%)
Query: 1 MKQLLQIQAHLITSGLFFNNSFWT--INLLKHSADFGSPDYTVLVFKCINNPGTFCVNAV 58
+ +L QIQA+ I + L + S T IN + D+ +F I + N +
Sbjct: 42 LNELKQIQAYTIKTNLQSDISVLTKLINFCTLNPTTSYMDHAHHLFDQILDKDIILFNIM 101
Query: 59 IKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGV 118
+ Y+ S P + +++ +G +P+ YTF SL +CA + + G H A+K G+
Sbjct: 102 ARGYARSNSPYLAFSLFGELLCSGLLPDDYTFSSLLKACASSKALREGMGLHCFAVKLGL 161
Query: 119 DFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDI 178
+ + + +LINMY +C DM+AA +FD
Sbjct: 162 NHNIYICPTLINMYA-----EC--------------------------NDMNAARGVFDE 190
Query: 179 MPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEG 238
M + +VS+N +I+GY++S P +L LFRE+ S D TM SV+ +C + G
Sbjct: 191 MEQPCIVSYNAIITGYARSSQPNEALSLFRELQASNIEPTDVTMLSVIMSCALLGALDLG 250
Query: 239 RSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIH 298
+ +H Y + + ++TALID+++KC + A +F+ M R+ W+AMI+ H
Sbjct: 251 KWIHEYVKKKGFDKYVKVNTALIDMFAKCGSLTDAISIFEGMRVRDTQAWSAMIVAFATH 310
Query: 299 GKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIK 358
G + I +F + V PDEITF+G++ AC A L+ +GR YF M Y I
Sbjct: 311 GDGLKAISMFEEMKREGV-----RPDEITFLGLLYACSHAGLVEQGRGYFYSMSKTYGIT 365
Query: 359 PNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVE 418
P HY CM +L A +EA + K+ + I+W +LLS C G V M +
Sbjct: 366 PGIKHYGCMVDLLGRAGHLDEAYNFVDKL-----EIKATPILWRTLLSACSTHGNVEMAK 420
Query: 419 RLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLKEVV 478
R+ + ++D Y L N+YA G+WEDV +R+LMK R + ++PGC V++ VV
Sbjct: 421 RVIERIFELDDAHGGDYVILSNLYARVGRWEDVNHLRKLMKDRGVVKVPGCSSVEVNNVV 480
Query: 479 EKLKVG 484
+ G
Sbjct: 481 HEFFSG 486
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 47/199 (23%), Positives = 87/199 (43%), Gaps = 21/199 (10%)
Query: 200 PGCSLKLFREMMKSGFRGNDKTMASV--LTACGRSARFNEGRSVHGYTVRTSLKPNIILD 257
P C L + S F N+ + + L+ + NE + + YT++T+L+ +I +
Sbjct: 7 PTCQFTLTKP--SSAFSKNEFVINQLHPLSLLSKCTSLNELKQIQAYTIKTNLQSDISVL 64
Query: 258 TALID---LYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNG 314
T LI+ L ++ A +FD + D++++ +N M G+ P LF G
Sbjct: 65 TKLINFCTLNPTTSYMDHAHHLFDQILDKDIILFNIMARGYARSNSPYLAFSLF-----G 119
Query: 315 TVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAH--YWC--MANL 370
+ + PD+ TF ++ AC ++ L EG + + +K H Y C + N+
Sbjct: 120 ELLCSGLLPDDYTFSSLLKACASSKALREGMG-----LHCFAVKLGLNHNIYICPTLINM 174
Query: 371 YAGAELTEEAEEILRKMPE 389
YA A + +M +
Sbjct: 175 YAECNDMNAARGVFDEMEQ 193
>gi|357455473|ref|XP_003598017.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355487065|gb|AES68268.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 479
Score = 242 bits (618), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 157/498 (31%), Positives = 245/498 (49%), Gaps = 61/498 (12%)
Query: 1 MKQLLQIQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIK 60
+ L QI A + +G F +N + ++ A + +Y + VF I P +F N +I+
Sbjct: 25 LNHLKQIHARIFLTG-FNHNLILSGKIIMFCAVSQNMNYALNVFDKIPKPDSFLWNTMIR 83
Query: 61 AYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDF 120
+ NS + + + ++ P+++TF + A+ V G H K G +
Sbjct: 84 GFGNSTTHSHNAIHFFKRMQLAHRPDNFTFSFILKIIARLRFVNLGKQLHCSLFKFGFEN 143
Query: 121 ELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMP 180
V NSLI+MYG D+ AH+LF+ M
Sbjct: 144 HTYVRNSLIHMYGMLK-------------------------------DIEIAHQLFEEMY 172
Query: 181 ERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRG-----NDKTMASVLTACGRSARF 235
+ N+VSWN +I + G ++ LF +M++ G + T+ L+ACG
Sbjct: 173 QPNLVSWNSIIDCHVYCGKYNEAIDLFTKMVQQQHNGMELQPDHATLVVTLSACGAIGSL 232
Query: 236 NEGRSVHGYTVR---TSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMI 292
+ GR VH + VR S +I + AL+D+Y+KC VE A F +M +N+V WN MI
Sbjct: 233 DFGRKVHSF-VRDGVNSFGESISVFNALVDMYAKCGAVEEAYETFSNMKRKNVVSWNVMI 291
Query: 293 LGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMI 352
LG HG EE + LFT +++ V PDEITF+ V+CAC L+ EGR+YF M
Sbjct: 292 LGFASHGNGEEALALFTRMLHENVE----RPDEITFLCVLCACSHGGLVDEGRRYFEIMN 347
Query: 353 DFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQG 412
Y IKP HY CM +L A L EA E+++ MP + + +I+W +LL+ CR G
Sbjct: 348 RDYNIKPTIKHYGCMVDLLGRAGLFVEAYELIKSMPVECN-----AIIWRTLLAACRNYG 402
Query: 413 AVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGR------- 465
V + E++ K ++++P S Y L N+YA GQW ++++ R M++RR+ +
Sbjct: 403 NVELGEKVRKHLMELEPDHSSDYVLLANMYASTGQWNEMSKERRSMQERRVRKPEPGNSF 462
Query: 466 --MPGCRLVDLKEVVEKL 481
+PG R KE+VE+L
Sbjct: 463 IGIPGTRFE--KEIVERL 478
>gi|449438554|ref|XP_004137053.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g21090-like [Cucumis sativus]
Length = 611
Score = 242 bits (618), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 136/424 (32%), Positives = 229/424 (54%), Gaps = 19/424 (4%)
Query: 56 NAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALK 115
N ++ AY+ ++ + Y + N+++F + C K ++ HG L
Sbjct: 164 NTIVLAYAKQGCFNEAIGLYRDFRRLDMGFNAFSFAGVLILCVKLKELQLAKQVHGQVLV 223
Query: 116 NGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHEL 175
G L + +S+++ Y G M CAR +F +M +D+ +W +IVSG+ + GDM++A EL
Sbjct: 224 AGFLSNLVLSSSIVDAYAKCGEMRCARTLFDEMLVKDIHAWTTIVSGYAKWGDMNSASEL 283
Query: 176 FDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARF 235
F MPE+N VSW+ +ISGY+++ +L F +MMK G T +S L AC A
Sbjct: 284 FHQMPEKNPVSWSALISGYARNSLGHEALDYFTKMMKFGINPEQYTFSSCLCACASIAAL 343
Query: 236 NEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADR-NLVCWNAMILG 294
G+ VHGY +RT + N I+ ++LID+YSKC +E + VF M ++ ++V WN MI
Sbjct: 344 KHGKQVHGYLIRTYFRCNTIVVSSLIDMYSKCGMLEASCCVFHLMGNKQDVVVWNTMISA 403
Query: 295 HCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDF 354
+G E+ +++F +V + PD ITFI ++ AC + L+ EG ++F+ M
Sbjct: 404 LAQNGHGEKAMQMFNDMVE-----SGLKPDRITFIVILSACSHSGLVQEGLRFFKAMTYD 458
Query: 355 YKIKPNFAHYWCMANLYAGA----ELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRF 410
+ + P+ HY C+ +L A EL E E + K P+D +W +LL +CR
Sbjct: 459 HGVFPDQEHYSCLIDLLGRAGCFVELVNELENMSCK-PDDR--------VWSALLGVCRI 509
Query: 411 QGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCR 470
+ + ++A+ +++ PQ + Y L ++YA G+WE V +VRELM ++ + + G
Sbjct: 510 HNNIELGRKVAERVIELKPQSSAAYVSLASLYAFLGKWESVEKVRELMDEKFIRKERGIS 569
Query: 471 LVDL 474
+D+
Sbjct: 570 WIDV 573
Score = 136 bits (342), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 90/336 (26%), Positives = 159/336 (47%), Gaps = 31/336 (9%)
Query: 49 NPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGM 108
+ + C+ + S+ + + + ++ + G + FV L CAK +GG
Sbjct: 24 DSTSLCIAQSLLDLSSQGRLPEALSYLDRLAQRGVRLPTGIFVDLLRLCAKAKYF-KGGK 82
Query: 109 CHGLALKNGVDFELP---VMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVR 165
C L LK+ F+ P V N LI MY G AR +F +MS R+L SWN +++G+ +
Sbjct: 83 CVHLHLKH-TGFKRPTTIVANHLIGMYFECGRDVEARKVFDKMSVRNLYSWNHMLAGYAK 141
Query: 166 SGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASV 225
GD++ A +LFD M E++VVSWN ++ Y+K G ++ L+R+ + N + A V
Sbjct: 142 LGDVNNARKLFDRMMEKDVVSWNTIVLAYAKQGCFNEAIGLYRDFRRLDMGFNAFSFAGV 201
Query: 226 LTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNL 285
L C + + VHG + N++L ++++D Y+KC ++ A+ +FD M +++
Sbjct: 202 LILCVKLKELQLAKQVHGQVLVAGFLSNLVLSSSIVDAYAKCGEMRCARTLFDEMLVKDI 261
Query: 286 VCWNAMILGHC-----------IHGKPEEGIKLFTALVNGTVAGG--------------- 319
W ++ G+ H PE+ ++AL++G
Sbjct: 262 HAWTTIVSGYAKWGDMNSASELFHQMPEKNPVSWSALISGYARNSLGHEALDYFTKMMKF 321
Query: 320 SISPDEITFIGVICACVRAELLTEGRKYFRQMIDFY 355
I+P++ TF +CAC L G++ +I Y
Sbjct: 322 GINPEQYTFSSCLCACASIAALKHGKQVHGYLIRTY 357
>gi|297821463|ref|XP_002878614.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297324453|gb|EFH54873.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 588
Score = 242 bits (618), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 138/446 (30%), Positives = 221/446 (49%), Gaps = 32/446 (7%)
Query: 56 NAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALK 115
N +I Y ++ + Y M G P+ T + L SCA G + RG +
Sbjct: 151 NCLINGYKKIGEGEKAIEVYKVMESEGVKPDDVTMIGLVSSCAMLGDLNRGKEFYEYVKA 210
Query: 116 NGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHEL 175
NG+ +P+ N+L++M+ G + AR +F + R ++S +L
Sbjct: 211 NGLRMTIPLANALMDMFSKCGDIHEARRIFDNLEKRTIVS------------------KL 252
Query: 176 FDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARF 235
FD M E++VV WN MI G ++ +L LF+EM S ++ TM L+AC +
Sbjct: 253 FDDMEEKDVVMWNAMIGGSVQAKRSQDALALFQEMQTSNTDPDEITMIHCLSACSQLGAL 312
Query: 236 NEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGH 295
+ G +H Y + SL N+ L T+L+D+Y+KC + A VF + RN + + A+I G
Sbjct: 313 DVGIWIHRYIEKHSLSLNVALGTSLVDMYAKCGNISEALCVFHGIQTRNSLTYTAIIGGL 372
Query: 296 CIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFY 355
+HG I F +++ +A PDEITFIG++ AC ++ GR YF QM +
Sbjct: 373 ALHGDASTAISYFNEMIDAGIA-----PDEITFIGLLSACCHGGMIQTGRDYFSQMKSRF 427
Query: 356 KIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVA 415
+ P HY M +L A L EEA++++ MP M ++ +W +LL CR G V
Sbjct: 428 NLNPQLKHYSIMVDLLGRAGLLEEADKLMESMP-----MEADAAVWGALLFGCRMHGNVK 482
Query: 416 MVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLK 475
+ E+ AK +++DP D Y L +Y A WED R R +M +R + ++PGC +++
Sbjct: 483 LGEKAAKKLLELDPSDSGIYVLLDGMYGEANMWEDAKRARRMMNERGVEKIPGCSSIEVN 542
Query: 476 EVVEKLKVGHFWRGGMKEEVNKMMEC 501
+V + V R + E K+ +C
Sbjct: 543 GIVSEFIV----RDKSRPESEKIYDC 564
Score = 139 bits (350), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 114/468 (24%), Positives = 194/468 (41%), Gaps = 84/468 (17%)
Query: 38 DYTVLVFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNG---FMPNSYTFVSLF 94
+Y V + K I NP F N I+ +S S P V+ Y QM++ G P+ +T+ LF
Sbjct: 29 NYCVKILKGIENPNAFSWNVTIRGFSESENPKDAVLAYKQMLRRGCCESRPDHFTYPVLF 88
Query: 95 GSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLI 154
CA G M G K ++ V N+ I+M+ G M+ AR +F + RDL+
Sbjct: 89 KVCADLRLNSLGHMILGHVFKLRLELVSHVHNASIHMFASCGEMENARKVFDESPVRDLV 148
Query: 155 SWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSG 214
SWN +++G+ + G+ A E++ +M G
Sbjct: 149 SWNCLINGYKKIGEGEKAIEVYKVMESE-------------------------------G 177
Query: 215 FRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQ 274
+ +D TM ++++C N G+ + Y L+ I L AL+D++SKC + A+
Sbjct: 178 VKPDDVTMIGLVSSCAMLGDLNRGKEFYEYVKANGLRMTIPLANALMDMFSKCGDIHEAR 237
Query: 275 RVFDS-------------MADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSI 321
R+FD+ M ++++V WNAMI G + ++ + LF +
Sbjct: 238 RIFDNLEKRTIVSKLFDDMEEKDVVMWNAMIGGSVQAKRSQDALALFQEMQTSNT----- 292
Query: 322 SPDEITFIGVICACVRAELLTEG---RKYFRQ------------MIDFYKIKPNFAHYWC 366
PDEIT I + AC + L G +Y + ++D Y N + C
Sbjct: 293 DPDEITMIHCLSACSQLGALDVGIWIHRYIEKHSLSLNVALGTSLVDMYAKCGNISEALC 352
Query: 367 M------------ANLYAGAELTEEAEEILRKMPEDND-NMSFESIMWVSLLSLCRFQGA 413
+ + G L +A + E D ++ + I ++ LLS C G
Sbjct: 353 VFHGIQTRNSLTYTAIIGGLALHGDASTAISYFNEMIDAGIAPDEITFIGLLSACCHGGM 412
Query: 414 VAMVERL---AKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELM 458
+ KS +++PQ Y ++++ AG E+ ++ E M
Sbjct: 413 IQTGRDYFSQMKSRFNLNPQ-LKHYSIMVDLLGRAGLLEEADKLMESM 459
Score = 40.8 bits (94), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 42/207 (20%), Positives = 79/207 (38%), Gaps = 32/207 (15%)
Query: 7 IQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSNSC 66
I ++ L N + T +L+ A G+ + VF I + A+I +
Sbjct: 318 IHRYIEKHSLSLNVALGT-SLVDMYAKCGNISEALCVFHGIQTRNSLTYTAIIGGLALHG 376
Query: 67 VPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMN 126
+ ++ +MI G P+ TF+ L +C CHG ++ G D+
Sbjct: 377 DASTAISYFNEMIDAGIAPDEITFIGLLSAC-----------CHGGMIQTGRDY------ 419
Query: 127 SLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMP-ERNVV 185
F M N+ Q+ ++ +V R+G + A +L + MP E +
Sbjct: 420 --------FSQMKSRFNLNPQLK-----HYSIMVDLLGRAGLLEEADKLMESMPMEADAA 466
Query: 186 SWNIMISGYSKSGNPGCSLKLFREMMK 212
W ++ G GN K +++++
Sbjct: 467 VWGALLFGCRMHGNVKLGEKAAKKLLE 493
>gi|357480897|ref|XP_003610734.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355512069|gb|AES93692.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 726
Score = 242 bits (618), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 145/495 (29%), Positives = 242/495 (48%), Gaps = 11/495 (2%)
Query: 7 IQAHLITSGL-FFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSNS 65
++ H + S L F ++ F L+ A L+F + +P N +I Y +
Sbjct: 141 LEIHGLASKLGFVDDPFIQTGLIAMYASCRRIMDARLLFDKMCHPDAVAWNMIIDGYCQN 200
Query: 66 CVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVM 125
D + + M + P+S ++ +C G + G H NG + +
Sbjct: 201 GHYDDALRLFEDMRSSDMKPDSVILCTVLSACGHAGNLSYGRTIHEFVKDNGYAIDSHLQ 260
Query: 126 NSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVV 185
+LINMY GAMD AR ++ +S + LI +++SG+ + G + A +FD M ER++V
Sbjct: 261 TALINMYANCGAMDLARKIYDGLSSKHLIVSTAMLSGYAKLGMVKDARFIFDQMIERDLV 320
Query: 186 SWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYT 245
W+ MISGY++S P +LKLF EM++ + TM SV++AC + +H Y
Sbjct: 321 CWSAMISGYAESDQPQEALKLFDEMLQKRSVPDQITMLSVISACSHVGALAQANWIHTYV 380
Query: 246 VRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGI 305
R+ + ++ ALID+Y+KC + A+ VF++M +N++ W++MI +HG + I
Sbjct: 381 DRSGFGRALSVNNALIDMYAKCGNLVKAREVFENMPRKNVISWSSMINAFAMHGNADSAI 440
Query: 306 KLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYW 365
KLF + +I P+ +TFIGV+ AC A L+ EG K F MI+ + I P HY
Sbjct: 441 KLFRRM-----KEVNIEPNGVTFIGVLYACGHAGLVEEGEKLFSSMINEHGISPTREHYG 495
Query: 366 CMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFV 425
CM +LY A +A E++ MP + I+W SL+S C+ G + E AK +
Sbjct: 496 CMVDLYCRANFLRKAIELIETMP-----FAPNVIIWGSLMSACQVHGEAELGEFAAKRLL 550
Query: 426 DMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLKEVVEKLKVGH 485
+++P L N+YA +W DV +R+ M + + + +++ V +
Sbjct: 551 ELEPDHDGALVVLSNIYAKEKRWNDVGLIRKSMSYKGISKEKASSRIEINNQVHMFMMAD 610
Query: 486 FWRGGMKEEVNKMME 500
+ E K+ E
Sbjct: 611 RYHKQSDEIYEKLDE 625
Score = 139 bits (350), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 105/423 (24%), Positives = 181/423 (42%), Gaps = 81/423 (19%)
Query: 43 VFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIK-NGFMPNSYTFVSLFGSCAKTG 101
VF I NP T N +++ S S P++ + Y + N F + ++F SL + +K
Sbjct: 76 VFSQIPNPHTHFSNQLLRHLSRSSFPEKTIFLYHNLRAINAFALDRFSFPSLLKAVSKVS 135
Query: 102 CVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVS 161
G HGLA K G + + LI MY C R M ++
Sbjct: 136 AFNHGLEIHGLASKLGFVDDPFIQTGLIAMYA-----SCRRIMDARL------------- 177
Query: 162 GHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKT 221
LFD M + V+WN++I GY ++G+ +L+LF +M S + +
Sbjct: 178 -------------LFDKMCHPDAVAWNMIIDGYCQNGHYDDALRLFEDMRSSDMKPDSVI 224
Query: 222 MASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQR------ 275
+ +VL+ACG + + GR++H + + L TALI++Y+ C +++A++
Sbjct: 225 LCTVLSACGHAGNLSYGRTIHEFVKDNGYAIDSHLQTALINMYANCGAMDLARKIYDGLS 284
Query: 276 -------------------------VFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTA 310
+FD M +R+LVCW+AMI G+ +P+E +KLF
Sbjct: 285 SKHLIVSTAMLSGYAKLGMVKDARFIFDQMIERDLVCWSAMISGYAESDQPQEALKLFDE 344
Query: 311 LVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANL 370
++ PD+IT + VI AC L + + +D + + ++
Sbjct: 345 MLQKRSV-----PDQITMLSVISACSHVGALAQA-NWIHTYVDRSGFGRALSVNNALIDM 398
Query: 371 YAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQG----AVAMVERLAKSFVD 426
YA +A E+ MP N I W S+++ G A+ + R+ + V+
Sbjct: 399 YAKCGNLVKAREVFENMPRKN------VISWSSMINAFAMHGNADSAIKLFRRMKE--VN 450
Query: 427 MDP 429
++P
Sbjct: 451 IEP 453
>gi|449530628|ref|XP_004172296.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g21090-like [Cucumis sativus]
Length = 611
Score = 242 bits (618), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 136/424 (32%), Positives = 229/424 (54%), Gaps = 19/424 (4%)
Query: 56 NAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALK 115
N ++ AY+ ++ + Y + N+++F + C K ++ HG L
Sbjct: 164 NTIVLAYAKQGCFNEAIGLYRDFRRLDMGFNAFSFAGVLILCVKLKELQLAKQVHGQVLV 223
Query: 116 NGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHEL 175
G L + +S+++ Y G M CAR +F +M +D+ +W +IVSG+ + GDM++A EL
Sbjct: 224 AGFLSNLVLSSSIVDAYSKCGEMRCARTLFDEMLVKDIHAWTTIVSGYAKWGDMNSASEL 283
Query: 176 FDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARF 235
F MPE+N VSW+ +ISGY+++ +L F +MMK G T +S L AC A
Sbjct: 284 FHQMPEKNPVSWSALISGYARNSLGHEALDYFTKMMKFGINPEQYTFSSCLCACASIAAL 343
Query: 236 NEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADR-NLVCWNAMILG 294
G+ VHGY +RT + N I+ ++LID+YSKC +E + VF M ++ ++V WN MI
Sbjct: 344 KHGKQVHGYLIRTYFRCNTIVVSSLIDMYSKCGMLEASCCVFHLMGNKQDVVVWNTMISA 403
Query: 295 HCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDF 354
+G E+ +++F +V + PD ITFI ++ AC + L+ EG ++F+ M
Sbjct: 404 LAQNGHGEKAMQMFNDMVE-----SGLKPDRITFIVILSACSHSGLVQEGLRFFKAMTYD 458
Query: 355 YKIKPNFAHYWCMANLYAGA----ELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRF 410
+ + P+ HY C+ +L A EL E E + K P+D +W +LL +CR
Sbjct: 459 HGVFPDQEHYACLIDLLGRAGCFVELVNELENMSCK-PDDR--------VWSALLGVCRI 509
Query: 411 QGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCR 470
+ + ++A+ +++ PQ + Y L ++YA G+WE V +VRELM ++ + + G
Sbjct: 510 HNNIELGRKVAERVIELKPQSSAAYVSLASLYAFLGKWESVEKVRELMDEKFIRKERGIS 569
Query: 471 LVDL 474
+D+
Sbjct: 570 WIDV 573
Score = 137 bits (345), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 92/337 (27%), Positives = 161/337 (47%), Gaps = 32/337 (9%)
Query: 48 NNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGG 107
++ G +++ S +P + + + ++ + G + FV L CAK +GG
Sbjct: 24 DSTGLCIAQSLLDLSSQGRLP-EALSYLDRLAQRGIRLPTGIFVDLLRLCAKAKYF-KGG 81
Query: 108 MCHGLALKNGVDFELP---VMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHV 164
C L LK+ F+ P V N LI MY G AR +F +MS R+L SWN +++G+
Sbjct: 82 KCVHLHLKH-TGFKRPTTIVANHLIGMYFECGRDVEARKVFDKMSVRNLYSWNHMLAGYA 140
Query: 165 RSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMAS 224
+ GD++ A +LFD M E++VVSWN ++ Y+K G ++ L+R+ + N + A
Sbjct: 141 KLGDVNNARKLFDRMMEKDVVSWNTIVLAYAKQGCFNEAIGLYRDFRRLDMGFNAFSFAG 200
Query: 225 VLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRN 284
VL C + + VHG + N++L ++++D YSKC ++ A+ +FD M ++
Sbjct: 201 VLILCVKLKELQLAKQVHGQVLVAGFLSNLVLSSSIVDAYSKCGEMRCARTLFDEMLVKD 260
Query: 285 LVCWNAMILGHC-----------IHGKPEEGIKLFTALVNGTVAGG-------------- 319
+ W ++ G+ H PE+ ++AL++G
Sbjct: 261 IHAWTTIVSGYAKWGDMNSASELFHQMPEKNPVSWSALISGYARNSLGHEALDYFTKMMK 320
Query: 320 -SISPDEITFIGVICACVRAELLTEGRKYFRQMIDFY 355
I+P++ TF +CAC L G++ +I Y
Sbjct: 321 FGINPEQYTFSSCLCACASIAALKHGKQVHGYLIRTY 357
>gi|255578965|ref|XP_002530335.1| Bipolar kinesin KRP-130, putative [Ricinus communis]
gi|223530139|gb|EEF32051.1| Bipolar kinesin KRP-130, putative [Ricinus communis]
Length = 1530
Score = 242 bits (617), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 124/403 (30%), Positives = 216/403 (53%), Gaps = 41/403 (10%)
Query: 75 YLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGC 134
+ ++I+NG P++YT + +C T ++ G + H + LK G+ + V +L++MY
Sbjct: 1169 FKELIRNGVQPDNYTLPFVIKACRDTVALDMGRLIHCVVLKYGLHLDHFVCAALVDMYAK 1228
Query: 135 FGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGY 194
++ A+ LFD+MP +++V+W +MI GY
Sbjct: 1229 CKVIEDAK-------------------------------LLFDVMPSKDLVTWTVMIGGY 1257
Query: 195 SKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNI 254
++ GN SL LF + + GF + M S++ AC + N+ R VH Y R ++
Sbjct: 1258 AECGNAKESLVLFDHLREEGFVPDKIAMVSIVNACAKLGAMNKARFVHEYVNRNRFSLDV 1317
Query: 255 ILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNG 314
IL TA+ID+Y+KC V+ A+ +FD+M +N++ W+AMI + HG+ ++ ++LF +++
Sbjct: 1318 ILGTAMIDMYAKCGDVDSAREIFDNMHHKNVISWSAMIAAYGYHGQGKKALELFPMMLS- 1376
Query: 315 TVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGA 374
I P+ ITF+ ++ AC A L+ +G M + + ++P+ H+ CM +L A
Sbjct: 1377 ----SGILPNNITFVSLLYACSHAGLVEDGLTLLSLMWESFGVRPDIKHHTCMVDLLGRA 1432
Query: 375 ELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSR 434
EA + M + D +W SLL CR + + E+ AKS +++ PQ+
Sbjct: 1433 GQLTEAFRFIENMTVEKDEG-----LWSSLLGACRIHKRIDLAEKAAKSLLELQPQNPGN 1487
Query: 435 YQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLKEV 477
Y L N+YA AGQW+DVA++R+LM KR++ ++PG ++LK +
Sbjct: 1488 YILLSNIYANAGQWKDVAKIRDLMTKRKLKKIPGYTWIELKSI 1530
Score = 115 bits (287), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 70/262 (26%), Positives = 135/262 (51%), Gaps = 14/262 (5%)
Query: 152 DLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMM 211
+L N ++ +V ++ A+ LFD MP++N VSW+IMI G+ K G K F+E++
Sbjct: 1114 NLTVANKLLYVYVHHKCLTDAYALFDEMPQKNPVSWSIMIGGFVKVGEFMQCYKTFKELI 1173
Query: 212 KSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVE 271
++G + ++ T+ V+ AC + + GR +H ++ L + + AL+D+Y+KC+ +E
Sbjct: 1174 RNGVQPDNYTLPFVIKACRDTVALDMGRLIHCVVLKYGLHLDHFVCAALVDMYAKCKVIE 1233
Query: 272 VAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGV 331
A+ +FD M ++LV W MI G+ G +E + LF L PD+I + +
Sbjct: 1234 DAKLLFDVMPSKDLVTWTVMIGGYAECGNAKESLVLFDHLRE-----EGFVPDKIAMVSI 1288
Query: 332 ICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDN 391
+ AC + + + R + + ++ + + M ++YA + A EI
Sbjct: 1289 VNACAKLGAMNKAR-FVHEYVNRNRFSLDVILGTAMIDMYAKCGDVDSAREIF------- 1340
Query: 392 DNMSFESIM-WVSLLSLCRFQG 412
DNM ++++ W ++++ + G
Sbjct: 1341 DNMHHKNVISWSAMIAAYGYHG 1362
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 58/262 (22%), Positives = 119/262 (45%), Gaps = 35/262 (13%)
Query: 42 LVFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTG 101
L+F + + +I Y+ + +V + + + GF+P+ VS+ +CAK G
Sbjct: 1237 LLFDVMPSKDLVTWTVMIGGYAECGNAKESLVLFDHLREEGFVPDKIAMVSIVNACAKLG 1296
Query: 102 CVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVS 161
+ + H +N ++ + ++I+MY G +D AR +F M +++ISW+++++
Sbjct: 1297 AMNKARFVHEYVNRNRFSLDVILGTAMIDMYAKCGDVDSAREIFDNMHHKNVISWSAMIA 1356
Query: 162 GHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKT 221
+ GY G +L+LF M+ SG N+ T
Sbjct: 1357 AY-----------------------------GYHGQGKK--ALELFPMMLSSGILPNNIT 1385
Query: 222 MASVLTACGRSARFNEGRSVHGYTVRT-SLKPNIILDTALIDLYSKCQKVEVAQRVFDSM 280
S+L AC + +G ++ + ++P+I T ++DL + ++ A R ++M
Sbjct: 1386 FVSLLYACSHAGLVEDGLTLLSLMWESFGVRPDIKHHTCMVDLLGRAGQLTEAFRFIENM 1445
Query: 281 A-DRNLVCWNAMILGHC-IHGK 300
+++ W+++ LG C IH +
Sbjct: 1446 TVEKDEGLWSSL-LGACRIHKR 1466
Score = 45.8 bits (107), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 42/175 (24%), Positives = 83/175 (47%), Gaps = 9/175 (5%)
Query: 32 ADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFV 91
A G D +F +++ +A+I AY + + + M+ +G +PN+ TFV
Sbjct: 1328 AKCGDVDSAREIFDNMHHKNVISWSAMIAAYGYHGQGKKALELFPMMLSSGILPNNITFV 1387
Query: 92 SLFGSCAKTGCVERGGMCHGLALKN-GVDFELPVMNSLINMYGCFGAMDCARNMFVQMS- 149
SL +C+ G VE G L ++ GV ++ ++++ G G + A M+
Sbjct: 1388 SLLYACSHAGLVEDGLTLLSLMWESFGVRPDIKHHTCMVDLLGRAGQLTEAFRFIENMTV 1447
Query: 150 PRDLISWNSIVSG---HVRSGDMS--AAHELFDIMPERNVVSWNIMISGYSKSGN 199
+D W+S++ H R D++ AA L ++ P+ N ++ ++ + Y+ +G
Sbjct: 1448 EKDEGLWSSLLGACRIHKRI-DLAEKAAKSLLELQPQ-NPGNYILLSNIYANAGQ 1500
Score = 41.6 bits (96), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 41/147 (27%), Positives = 66/147 (44%), Gaps = 12/147 (8%)
Query: 245 TVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEG 304
T + L N+ + L+ +Y + + A +FD M +N V W+ MI G G+ +
Sbjct: 1106 TTNSVLYNNLTVANKLLYVYVHHKCLTDAYALFDEMPQKNPVSWSIMIGGFVKVGEFMQC 1165
Query: 305 IKLFTALV-NGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAH 363
K F L+ NG + PD T VI AC L GR ++ K + H
Sbjct: 1166 YKTFKELIRNG------VQPDNYTLPFVIKACRDTVALDMGRLIHCVVL---KYGLHLDH 1216
Query: 364 YWCMA--NLYAGAELTEEAEEILRKMP 388
+ C A ++YA ++ E+A+ + MP
Sbjct: 1217 FVCAALVDMYAKCKVIEDAKLLFDVMP 1243
>gi|413943774|gb|AFW76423.1| hypothetical protein ZEAMMB73_944105 [Zea mays]
Length = 446
Score = 242 bits (617), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 127/404 (31%), Positives = 222/404 (54%), Gaps = 17/404 (4%)
Query: 78 MIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALK-NGVDFELPVMNSLINMYGCFG 136
M+ GF P+ T S+ +CA G H +K + + ++ + N+L++MY G
Sbjct: 1 MMATGFFPDEVTLSSVMSACAGLAAEREGRQVHAHMVKRDRLRDDMVLNNALVDMYAKCG 60
Query: 137 AMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSK 196
AR +F M R ++S SI++G+ +S ++ A +F M E+NV++WN++I+ Y++
Sbjct: 61 RTWEARCIFDSMPSRSVVSETSILAGYAKSANVEDAQVVFSQMVEKNVIAWNVLIAAYAQ 120
Query: 197 SGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLK----- 251
+G +++LF ++ + T +VL ACG A G+ H + ++ +
Sbjct: 121 NGEEEEAIRLFVQLKRDSIWPTHYTYGNVLNACGNIAVLQLGQQAHVHVLKEGFRFDFGP 180
Query: 252 -PNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTA 310
++ + +L+D+Y K ++ +VF+ MA R+ V WNAMI+G+ +G+ ++ + LF
Sbjct: 181 ESDVFVGNSLVDMYLKTGSIDDGAKVFERMAARDNVSWNAMIVGYAQNGRAKDALHLFER 240
Query: 311 LVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANL 370
++ + +PD +T IGV+ AC + L+ EGR++F M + + I P+ HY CM +L
Sbjct: 241 ML-----CSNENPDSVTMIGVLSACGHSGLVDEGRRHFHFMTEDHGITPSRDHYTCMVDL 295
Query: 371 YAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQ 430
A +EAEE+++ MP + D S++W SLL CR V + ER A ++DP+
Sbjct: 296 LGRAGHLKEAEELIKDMPTEPD-----SVLWASLLGACRLHKNVELGERTAGRLFELDPE 350
Query: 431 DFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDL 474
+ Y L N+YA G+W DV RVR MK R + + PGC +++
Sbjct: 351 NSGPYVLLSNMYAEMGKWADVFRVRRSMKDRGVSKQPGCSWIEI 394
Score = 92.0 bits (227), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 68/272 (25%), Positives = 120/272 (44%), Gaps = 41/272 (15%)
Query: 42 LVFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTG 101
+VF + N +I AY+ + ++ + ++Q+ ++ P YT+ ++ +C
Sbjct: 98 VVFSQMVEKNVIAWNVLIAAYAQNGEEEEAIRLFVQLKRDSIWPTHYTYGNVLNACGNIA 157
Query: 102 CVERGGMCHGLALKNGVDFELP------VMNSLINMYGCFGAMDCARNMFVQMSPRDLIS 155
++ G H LK G F+ V NSL++MY G++D +F +M+ RD +S
Sbjct: 158 VLQLGQQAHVHVLKEGFRFDFGPESDVFVGNSLVDMYLKTGSIDDGAKVFERMAARDNVS 217
Query: 156 WNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGF 215
WN+++ G Y+++G +L LF M+ S
Sbjct: 218 WNAMIVG-------------------------------YAQNGRAKDALHLFERMLCSNE 246
Query: 216 RGNDKTMASVLTACGRSARFNEG-RSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQ 274
+ TM VL+ACG S +EG R H T + P+ T ++DL + ++ A+
Sbjct: 247 NPDSVTMIGVLSACGHSGLVDEGRRHFHFMTEDHGITPSRDHYTCMVDLLGRAGHLKEAE 306
Query: 275 RVFDSM-ADRNLVCWNAMILGHC-IHGKPEEG 304
+ M + + V W A +LG C +H E G
Sbjct: 307 ELIKDMPTEPDSVLW-ASLLGACRLHKNVELG 337
Score = 42.7 bits (99), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 45/221 (20%), Positives = 93/221 (42%), Gaps = 14/221 (6%)
Query: 6 QIQAHLITSGLFFN-----NSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIK 60
Q H++ G F+ + F +L+ GS D VF+ + NA+I
Sbjct: 164 QAHVHVLKEGFRFDFGPESDVFVGNSLVDMYLKTGSIDDGAKVFERMAARDNVSWNAMIV 223
Query: 61 AYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERG-GMCHGLALKNGVD 119
Y+ + + + +M+ + P+S T + + +C +G V+ G H + +G+
Sbjct: 224 GYAQNGRAKDALHLFERMLCSNENPDSVTMIGVLSACGHSGLVDEGRRHFHFMTEDHGIT 283
Query: 120 FELPVMNSLINMYGCFGAMDCARNMFVQM-SPRDLISWNSIVSG-----HVRSGDMSAAH 173
++++ G G + A + M + D + W S++ +V G+ +A
Sbjct: 284 PSRDHYTCMVDLLGRAGHLKEAEELIKDMPTEPDSVLWASLLGACRLHKNVELGERTAG- 342
Query: 174 ELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSG 214
LF++ PE N + ++ + Y++ G ++ R M G
Sbjct: 343 RLFELDPE-NSGPYVLLSNMYAEMGKWADVFRVRRSMKDRG 382
>gi|225445386|ref|XP_002281711.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic [Vitis vinifera]
Length = 711
Score = 242 bits (617), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 143/497 (28%), Positives = 247/497 (49%), Gaps = 45/497 (9%)
Query: 6 QIQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSNS 65
Q+ H G F ++++ L+ ++ G VF + N +I AY+
Sbjct: 158 QLHCHSTKLG-FASDAYIQNTLMNMYSNCGCLVSARKVFDKMVNKSVVSWATMIGAYAQW 216
Query: 66 CVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVM 125
+P + + + +M PN T V++ +CA++ +E H + G+ F +
Sbjct: 217 DLPHEAIKLFRRMEIASVKPNEITLVNVLTACARSRDLETAKQVHKYIDETGIGFHTVLT 276
Query: 126 NSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVV 185
++L+++Y G AR+ LF+ MPE+N+
Sbjct: 277 SALMDVYCKCGCYPLARD-------------------------------LFNKMPEKNLF 305
Query: 186 SWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYT 245
WNIMI+G+ + + +L LF EM SG +G+ TMAS+L AC G+ +H Y
Sbjct: 306 CWNIMINGHVEDSDYEEALSLFNEMQLSGVKGDKVTMASLLIACTHLGALELGKWLHVYI 365
Query: 246 VRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGI 305
+ ++ ++ L TAL+D+Y+KC +E A RVF M +++++ W A+I+G + G+ + +
Sbjct: 366 EKEKIEVDVALGTALVDMYAKCGSIESAMRVFQEMPEKDVMTWTALIVGLAMCGQGLKAL 425
Query: 306 KLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYW 365
+LF + + PD ITF+GV+ AC A L+ EG YF M + Y I+P+ HY
Sbjct: 426 ELFHEM-----QMSEVKPDAITFVGVLAACSHAGLVNEGIAYFNSMPNKYGIQPSIEHYG 480
Query: 366 CMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFV 425
CM ++ A EAE++++ MP M+ + + V LLS CR G + + ER A+ +
Sbjct: 481 CMVDMLGRAGRIAEAEDLIQNMP-----MAPDYFVLVGLLSACRIHGNLVVAERAAQQLI 535
Query: 426 DMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLKEVVEKL---K 482
++DP++ Y L N+Y+ WE ++RELM +R + + PGC +++ VV +
Sbjct: 536 ELDPKNGGTYVLLSNIYSSMKNWEAAKKMRELMVERNIKKPPGCSAIEVGGVVHEFVKGD 595
Query: 483 VGHFWRGGMKEEVNKMM 499
V H + E ++ MM
Sbjct: 596 VSHPQSSEIYETLDDMM 612
Score = 191 bits (484), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 127/402 (31%), Positives = 197/402 (49%), Gaps = 44/402 (10%)
Query: 1 MKQLLQIQAHLITSGLFFNNSFWTINLLKHSA--DFGSPDYTVLVFKCINNPGTFCVNAV 58
M QL QI A ++ + LF + F ++ A D GS Y LVF I NP TF N++
Sbjct: 53 MSQLKQIHAQMLRTCLFVD-PFSASKIVAFCALHDSGSLPYARLVFNQIPNPTTFTCNSI 111
Query: 59 IKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGV 118
I+ Y+N +P Q ++FY M+ G P+ +TF SLF SC G + G H + K G
Sbjct: 112 IRGYTNKNLPRQAILFYQLMMLQGLDPDRFTFPSLFKSC---GVLCEGKQLHCHSTKLGF 168
Query: 119 DFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDI 178
+ + N+L+NMY G + AR ++FD
Sbjct: 169 ASDAYIQNTLMNMYSNCGCLVSAR-------------------------------KVFDK 197
Query: 179 MPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEG 238
M ++VVSW MI Y++ P ++KLFR M + + N+ T+ +VLTAC RS
Sbjct: 198 MVNKSVVSWATMIGAYAQWDLPHEAIKLFRRMEIASVKPNEITLVNVLTACARSRDLETA 257
Query: 239 RSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIH 298
+ VH Y T + + +L +AL+D+Y KC +A+ +F+ M ++NL CWN MI GH
Sbjct: 258 KQVHKYIDETGIGFHTVLTSALMDVYCKCGCYPLARDLFNKMPEKNLFCWNIMINGHVED 317
Query: 299 GKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIK 358
EE + LF + V G D++T ++ AC L G K+ I+ KI+
Sbjct: 318 SDYEEALSLFNEMQLSGVKG-----DKVTMASLLIACTHLGALELG-KWLHVYIEKEKIE 371
Query: 359 PNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIM 400
+ A + ++YA E A + ++MPE D M++ +++
Sbjct: 372 VDVALGTALVDMYAKCGSIESAMRVFQEMPE-KDVMTWTALI 412
>gi|42567862|ref|NP_197034.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|223635759|sp|Q9LXF2.2|PP385_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g15300
gi|332004762|gb|AED92145.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 548
Score = 242 bits (617), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 155/512 (30%), Positives = 245/512 (47%), Gaps = 52/512 (10%)
Query: 1 MKQLLQIQAHLITSGLFFNNSFWTINLLKHSADFGSP---DYTVLVFKCINNPGTFCVNA 57
++ L QI A ++ +GL N S + L +SA P Y +F I P N
Sbjct: 25 IRTLKQIHASMVVNGLMSNLS--VVGELIYSASLSVPGALKYAHKLFDEIPKPDVSICNH 82
Query: 58 VIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNG 117
V++ + S P++ V Y +M K G P+ YTF + +C+K G HG +++G
Sbjct: 83 VLRGSAQSMKPEKTVSLYTEMEKRGVSPDRYTFTFVLKACSKLEWRSNGFAFHGKVVRHG 142
Query: 118 VDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFD 177
V N+LI + G + A +F + ++W+S+ SG+ + G + A LFD
Sbjct: 143 FVLNEYVKNALILFHANCGDLGIASELFDDSAKAHKVAWSSMTSGYAKRGKIDEAMRLFD 202
Query: 178 IMPERNVVSWNI-------------------------------MISGYSKSGNPGCSLKL 206
MP ++ V+WN+ MISGY G P +L +
Sbjct: 203 EMPYKDQVAWNVMITGCLKCKEMDSARELFDRFTEKDVVTWNAMISGYVNCGYPKEALGI 262
Query: 207 FREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRT-SLKPNIILDT----ALI 261
F+EM +G + T+ S+L+AC G+ +H Y + T S+ +I + T ALI
Sbjct: 263 FKEMRDAGEHPDVVTILSLLSACAVLGDLETGKRLHIYILETASVSSSIYVGTPIWNALI 322
Query: 262 DLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSI 321
D+Y+KC ++ A VF + DR+L WN +I+G +H E I++F + V
Sbjct: 323 DMYAKCGSIDRAIEVFRGVKDRDLSTWNTLIVGLALH-HAEGSIEMFEEMQRLKVW---- 377
Query: 322 SPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAE 381
P+E+TFIGVI AC + + EGRKYF M D Y I+PN HY CM ++ A EEA
Sbjct: 378 -PNEVTFIGVILACSHSGRVDEGRKYFSLMRDMYNIEPNIKHYGCMVDMLGRAGQLEEAF 436
Query: 382 EILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNV 441
+ M + +I+W +LL C+ G V + + + + M + Y L N+
Sbjct: 437 MFVESM-----KIEPNAIVWRTLLGACKIYGNVELGKYANEKLLSMRKDESGDYVLLSNI 491
Query: 442 YAVAGQWEDVARVRELMKKRRMGRMPGCRLVD 473
YA GQW+ V +VR++ R+ + G L++
Sbjct: 492 YASTGQWDGVQKVRKMFDDTRVKKPTGVSLIE 523
>gi|326504202|dbj|BAJ90933.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 634
Score = 242 bits (617), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 126/428 (29%), Positives = 228/428 (53%), Gaps = 10/428 (2%)
Query: 56 NAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALK 115
N +I + + + + +M + G + + +TFVSL C+K G +E G + H L
Sbjct: 178 NTMIGGCAQAGETSEACALFREMRRQGVLADVFTFVSLLLVCSKEGNLEVGRLVHCHMLA 237
Query: 116 NGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHEL 175
+G +L + N+L++MYG G + A F M ++++SW S++ + G + AA +
Sbjct: 238 SGSRVDLILGNALVDMYGKCGDLWMAHRCFDVMPIKNVVSWTSMLCALAKHGSVDAARDW 297
Query: 176 FDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARF 235
F+ MPERN++SWN MIS Y + G +L L+ M G ++ T+A VL+ G++
Sbjct: 298 FEQMPERNIISWNAMISCYVQGGRFPETLGLYNRMKSLGLTPDEVTLAGVLSVHGQNGDL 357
Query: 236 NEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGH 295
GR +H Y + P + + +LID+Y++C +V+ + +F M ++N + WN +I
Sbjct: 358 ASGRMIHCYIQDSFSDPGVTVLNSLIDMYARCGQVDTSISLFTEMPNKNTISWNVIIGAL 417
Query: 296 CIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFY 355
+HG+ +E + F A+V+ + SPDEITF+G++ AC LL +G+ YF+ M Y
Sbjct: 418 AMHGRAQEAVMFFRAMVS-----DAFSPDEITFVGLLSACSHGGLLEDGQYYFKAMRHIY 472
Query: 356 KIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVA 415
+KP HY CM +L +A ++++ MP M + ++W +L+ CR G V
Sbjct: 473 NVKPEVEHYACMVDLLGRHGHLAKAVDLIKDMP-----MKPDVVVWGALIGACRIHGHVE 527
Query: 416 MVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLK 475
+ + K ++++ + + + N+ QWED+ R+R+LM+ R + G +++
Sbjct: 528 IGKLAIKQLLELEGINGGLFVLISNLLYETRQWEDMKRLRKLMRDRGTKKDMGVSSIEIN 587
Query: 476 EVVEKLKV 483
+ + V
Sbjct: 588 NSIHEFGV 595
Score = 155 bits (393), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 107/422 (25%), Positives = 184/422 (43%), Gaps = 62/422 (14%)
Query: 1 MKQLLQIQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVL-----VFKCINNPGTFCV 55
++ L Q+ AHL+ G S + + A G L +F + +P F
Sbjct: 16 IRHLDQLHAHLLAHGPSAVASVVPQLVASYCALSGRAGDVALCHARRMFDRVPDPDRFAY 75
Query: 56 NAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALK 115
N++I+AYSNS P + + + +++ G +PN +T + +C++ E HG+A+K
Sbjct: 76 NSLIRAYSNSGCPQEALCLHRDVLRRGILPNEFTLPFVLKACSRARAAEHALATHGVAIK 135
Query: 116 NGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHEL 175
G ++ V N+L++ G++ +R +F +M+P
Sbjct: 136 LGYVRQVFVGNALLHSSASAGSLRDSRRLFAEMAP------------------------- 170
Query: 176 FDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARF 235
RNVVSWN MI G +++G + LFREM + G + T S+L C +
Sbjct: 171 -----HRNVVSWNTMIGGCAQAGETSEACALFREMRRQGVLADVFTFVSLLLVCSKEGNL 225
Query: 236 NEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGH 295
GR VH + + + + ++IL AL+D+Y KC + +A R FD M +N+V W +M+
Sbjct: 226 EVGRLVHCHMLASGSRVDLILGNALVDMYGKCGDLWMAHRCFDVMPIKNVVSWTSMLCAL 285
Query: 296 CIHGK-----------PEEGIKLFTALVNGTVAGG---------------SISPDEITFI 329
HG PE I + A+++ V GG ++PDE+T
Sbjct: 286 AKHGSVDAARDWFEQMPERNIISWNAMISCYVQGGRFPETLGLYNRMKSLGLTPDEVTLA 345
Query: 330 GVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPE 389
GV+ + L GR + D + P + ++YA + + + +MP
Sbjct: 346 GVLSVHGQNGDLASGRMIHCYIQDSFS-DPGVTVLNSLIDMYARCGQVDTSISLFTEMPN 404
Query: 390 DN 391
N
Sbjct: 405 KN 406
Score = 52.4 bits (124), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 53/208 (25%), Positives = 92/208 (44%), Gaps = 20/208 (9%)
Query: 26 NLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMP 85
+L+ A G D ++ +F + N T N +I A + + V+F+ M+ + F P
Sbjct: 381 SLIDMYARCGQVDTSISLFTEMPNKNTISWNVIIGALAMHGRAQEAVMFFRAMVSDAFSP 440
Query: 86 NSYTFVSLFGSCAKTGCVERG-----GMCHGLALKNGVDFELPVMNSLINMYGCFG-AMD 139
+ TFV L +C+ G +E G M H +K V+ M L+ +G A+D
Sbjct: 441 DEITFVGLLSACSHGGLLEDGQYYFKAMRHIYNVKPEVE-HYACMVDLLGRHGHLAKAVD 499
Query: 140 CARNMFVQMSPRDLISWNSIVS-----GHVRSGDMSAAHELFDIMPERNVVSWNIMISGY 194
++M M P D++ W +++ GHV G + A +L ++ E ++IS
Sbjct: 500 LIKDM--PMKP-DVVVWGALIGACRIHGHVEIGKL-AIKQLLEL--EGINGGLFVLISNL 553
Query: 195 SKSGNPGCSLKLFREMMKSGFRGNDKTM 222
+K R++M+ RG K M
Sbjct: 554 LYETRQWEDMKRLRKLMRD--RGTKKDM 579
>gi|357167426|ref|XP_003581157.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g61800-like, partial [Brachypodium distachyon]
Length = 357
Score = 242 bits (617), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 124/346 (35%), Positives = 202/346 (58%), Gaps = 10/346 (2%)
Query: 124 VMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERN 183
V N+L+++Y D A +F +M D++S+N+++ G++++G + A + F MP+R+
Sbjct: 15 VGNALVSLYAKNALPDSACRVFDEMPAPDVVSYNALMDGYIKAGRLGLATKEFMRMPQRD 74
Query: 184 VVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHG 243
VSW +++G +K+G ++ LF M GFR +D +A+VL+ C + +GR VH
Sbjct: 75 AVSWGTVVAGCAKAGRWEEAVLLFDRMRWEGFRPDDIVLAAVLSCCAQLGALEKGREVHE 134
Query: 244 YTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEE 303
Y ++ +PN+ L T L+DLY+KC VE+A+ VFD+ +RN+ WNA+I+G +HG
Sbjct: 135 YVRQSRPRPNVFLCTGLVDLYAKCGCVEIAREVFDTCPERNVFTWNALIVGLAMHGHGTV 194
Query: 304 GIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAH 363
+K F ++ PD +TF+GV+ C A L+ ++ F +M Y + H
Sbjct: 195 TLKYFDRML-----AEGFRPDGVTFLGVLIGCSHAGLIDMAKRIFFEMEMKYGVSRELKH 249
Query: 364 YWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKS 423
Y CMA+L A L EEA E+++KMP + D + +W +L+ CR G V E A+
Sbjct: 250 YGCMADLLGRAGLIEEAMEMVKKMPMEGD-----TYVWGGILAGCRKHGNVEEAEVAARH 304
Query: 424 FVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGC 469
++++P+D Y + +YA AG+WEDVARVR+LM +R R GC
Sbjct: 305 LLELNPEDGGVYSVMTGIYADAGRWEDVARVRKLMDERVGARNVGC 350
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 49/241 (20%), Positives = 92/241 (38%), Gaps = 41/241 (17%)
Query: 69 DQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSL 128
++ V+ + +M GF P+ ++ CA+ G +E+G H ++ + + L
Sbjct: 92 EEAVLLFDRMRWEGFRPDDIVLAAVLSCCAQLGALEKGREVHEYVRQSRPRPNVFLCTGL 151
Query: 129 INMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWN 188
+++Y G ++ AR +F R++ +WN+
Sbjct: 152 VDLYAKCGCVEIAREVFDTCPERNVFTWNA------------------------------ 181
Query: 189 IMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVH-----G 243
+I G + G+ +LK F M+ GFR + T VL C + + + +
Sbjct: 182 -LIVGLAMHGHGTVTLKYFDRMLAEGFRPDGVTFLGVLIGCSHAGLIDMAKRIFFEMEMK 240
Query: 244 YTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMA-DRNLVCWNAMILGHCIHGKPE 302
Y V LK + DL + +E A + M + + W ++ G HG E
Sbjct: 241 YGVSRELKHY----GCMADLLGRAGLIEEAMEMVKKMPMEGDTYVWGGILAGCRKHGNVE 296
Query: 303 E 303
E
Sbjct: 297 E 297
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 49/179 (27%), Positives = 72/179 (40%), Gaps = 33/179 (18%)
Query: 242 HGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKP 301
H V +L P + AL+ LY+K + A RVFD M ++V +NA++ G+ G+
Sbjct: 1 HAVAVTRNLLPFAHVGNALVSLYAKNALPDSACRVFDEMPAPDVVSYNALMDGYIKAGRL 60
Query: 302 EEGIKLF------TALVNGTVAGG--------------------SISPDEITFIGVICAC 335
K F A+ GTV G PD+I V+ C
Sbjct: 61 GLATKEFMRMPQRDAVSWGTVVAGCAKAGRWEEAVLLFDRMRWEGFRPDDIVLAAVLSCC 120
Query: 336 VRAELLTEGR---KYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDN 391
+ L +GR +Y RQ + +PN + +LYA E A E+ PE N
Sbjct: 121 AQLGALEKGREVHEYVRQ----SRPRPNVFLCTGLVDLYAKCGCVEIAREVFDTCPERN 175
>gi|449462814|ref|XP_004149135.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g13600-like [Cucumis sativus]
gi|449523485|ref|XP_004168754.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g13600-like [Cucumis sativus]
Length = 687
Score = 242 bits (617), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 139/476 (29%), Positives = 249/476 (52%), Gaps = 18/476 (3%)
Query: 8 QAH-LITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSNSC 66
Q H L+ + ++ + L+ + G +Y VF + N++I Y +
Sbjct: 172 QIHSLVYRSNYLSDVYMGSALVDMYSKCGRVEYAQSVFDEMTVRSRVSWNSLITCYEQNG 231
Query: 67 VPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALK-NGVDFELPVM 125
D+ + +++MIK G P+ T S+ +CA ++ G H +K + +L +
Sbjct: 232 PVDEALKIFVEMIKCGVEPDEVTLASVVSACATISAIKEGQQIHARVVKCDEFRNDLILG 291
Query: 126 NSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVV 185
N+L++MY ++ AR +F M R ++S S+VSG+ ++ + A +F M ++V+
Sbjct: 292 NALLDMYAKCNRINEARIIFDMMPIRSVVSETSMVSGYAKASKVKVARYMFSNMMVKDVI 351
Query: 186 SWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYT 245
+WN +I+G +++G +L LFR + + T ++L AC A GR H +
Sbjct: 352 TWNALIAGCTQNGENEEALILFRLLKRESVWPTHYTFGNLLNACANLADLQLGRQAHSHV 411
Query: 246 VRTSLK------PNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHG 299
++ + ++ + +LID+Y KC VE RVF M +++ V WNAMI+G+ +G
Sbjct: 412 LKHGFRFQYGEDSDVFVGNSLIDMYMKCGSVENGCRVFQHMLEKDCVSWNAMIVGYAQNG 471
Query: 300 KPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKP 359
+ +++F ++ A PD +T IGV+CAC A LL EGR YFR M + + P
Sbjct: 472 FGNKALEVFCKMLESGEA-----PDHVTMIGVLCACSHAGLLDEGRYYFRSMTAQHGLMP 526
Query: 360 NFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVER 419
HY CM +L A EEA+ ++ +M +M ++I+W SLL+ C+ + + E
Sbjct: 527 LKDHYTCMVDLLGRAGYLEEAKNLIEEM-----SMQPDAIVWGSLLAACKVHRNIQLGEY 581
Query: 420 LAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLK 475
+ K +++DP++ Y L N+YA W++V RVR+LM++R + + PGC ++++
Sbjct: 582 VVKKLLEVDPENSGPYVLLSNMYAENRDWKNVVRVRKLMRQRGVVKQPGCSWIEIQ 637
Score = 170 bits (430), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 93/303 (30%), Positives = 154/303 (50%), Gaps = 5/303 (1%)
Query: 86 NSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMF 145
+S F L CA++ H +K+ E + N LI++YG G +D AR +F
Sbjct: 18 DSSPFSKLLNQCARSRSARDTSRVHACIIKSPFASETFIQNRLIDVYGKCGCVDVARKLF 77
Query: 146 VQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLK 205
+M R++ SWNSI+ +SG + A +F+ MP+ + SWN MISG+ + G +L
Sbjct: 78 DRMLERNIFSWNSIICAFTKSGFLDDAVHIFEKMPQVDQCSWNSMISGFEQHGRFDEALV 137
Query: 206 LFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYS 265
F +M GF N+ + S L+AC G +H R++ ++ + +AL+D+YS
Sbjct: 138 YFAQMHGHGFLVNEYSFGSALSACAGLQDLKLGSQIHSLVYRSNYLSDVYMGSALVDMYS 197
Query: 266 KCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDE 325
KC +VE AQ VFD M R+ V WN++I + +G +E +K+F ++ V PDE
Sbjct: 198 KCGRVEYAQSVFDEMTVRSRVSWNSLITCYEQNGPVDEALKIFVEMIKCGV-----EPDE 252
Query: 326 ITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILR 385
+T V+ AC + EG++ +++ + + + + ++YA EA I
Sbjct: 253 VTLASVVSACATISAIKEGQQIHARVVKCDEFRNDLILGNALLDMYAKCNRINEARIIFD 312
Query: 386 KMP 388
MP
Sbjct: 313 MMP 315
Score = 121 bits (304), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 87/344 (25%), Positives = 158/344 (45%), Gaps = 68/344 (19%)
Query: 35 GSPDYTVLVFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLF 94
G D V +F+ + N++I + D+ +V++ QM +GF+ N Y+F S
Sbjct: 99 GFLDDAVHIFEKMPQVDQCSWNSMISGFEQHGRFDEALVYFAQMHGHGFLVNEYSFGSAL 158
Query: 95 GSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLI 154
+CA ++ G H L ++ ++ + ++L++MY G ++ A+++F +M+ R +
Sbjct: 159 SACAGLQDLKLGSQIHSLVYRSNYLSDVYMGSALVDMYSKCGRVEYAQSVFDEMTVRSRV 218
Query: 155 SWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSG 214
SWNS +I+ Y ++G +LK+F EM+K G
Sbjct: 219 SWNS-------------------------------LITCYEQNGPVDEALKIFVEMIKCG 247
Query: 215 FRGNDKTMASVLTACGRSARFNEGRSVHGYTVR-TSLKPNIILDTALIDLYSKCQ----- 268
++ T+ASV++AC + EG+ +H V+ + ++IL AL+D+Y+KC
Sbjct: 248 VEPDEVTLASVVSACATISAIKEGQQIHARVVKCDEFRNDLILGNALLDMYAKCNRINEA 307
Query: 269 --------------------------KVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPE 302
KV+VA+ +F +M ++++ WNA+I G +G+ E
Sbjct: 308 RIIFDMMPIRSVVSETSMVSGYAKASKVKVARYMFSNMMVKDVITWNALIAGCTQNGENE 367
Query: 303 EGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRK 346
E + LF L S+ P TF ++ AC L GR+
Sbjct: 368 EALILFRLLKR-----ESVWPTHYTFGNLLNACANLADLQLGRQ 406
>gi|298204516|emb|CBI23791.3| unnamed protein product [Vitis vinifera]
Length = 615
Score = 242 bits (617), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 134/404 (33%), Positives = 220/404 (54%), Gaps = 14/404 (3%)
Query: 75 YLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGC 134
Y +M G + +++T + SCA V G HG L+ G++ + V SLI+MY
Sbjct: 95 YARMHFLGLLGDNFTLPFVLKSCADLSRVCMGRCVHGQGLRVGLEGDFYVGASLIDMYVK 154
Query: 135 FGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGY 194
G + AR +F +M RD+ SWN++++G+++ G++ A +LF+ M RN+VSW MISGY
Sbjct: 155 CGVIGDARKLFDKMIVRDMASWNALIAGYMKEGEIGVAEDLFERMEHRNIVSWTAMISGY 214
Query: 195 SKSGNPGCSLKLFREMMKSG--FRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKP 252
+++G +L LF EM++ G + N T+ SVL AC +SA GR +H + L
Sbjct: 215 TQNGFAEQALGLFDEMLQDGSEMKPNWVTIVSVLPACAQSAALERGRRIHDFANGIGLHL 274
Query: 253 NIILDTALIDLYSKCQKVEVAQRVFDSMAD--RNLVCWNAMILGHCIHGKPEEGIKLFTA 310
N + TAL +Y+KC + A+ FD +A +NL+ WN MI + HG E + +F
Sbjct: 275 NSSVQTALAGMYAKCYSLVEARCCFDMIAQNGKNLIAWNTMITAYASHGCGVEAVSIFEN 334
Query: 311 LVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANL 370
++ V PD +TF+G++ C + L+ G +F M + ++P HY C+ +L
Sbjct: 335 MLRAGV-----QPDAVTFMGLLSGCSHSGLIDAGLNHFNDMGTIHSVEPRVEHYACVVDL 389
Query: 371 YAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQ 430
A EA+E++ +MP M +W +LL+ CR + + E A+ ++P
Sbjct: 390 LGRAGRLVEAKELISQMP-----MQAGPSVWGALLAACRSHRNLEIAELAARRLFVLEPD 444
Query: 431 DFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDL 474
+ Y L N+YA AG WE+V ++R L+K + M + PGC +++
Sbjct: 445 NSGNYVLLSNLYAEAGMWEEVKKLRALLKYQGMKKSPGCSWIEI 488
Score = 80.1 bits (196), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 78/356 (21%), Positives = 148/356 (41%), Gaps = 71/356 (19%)
Query: 204 LKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDL 263
L+ + M G G++ T+ VL +C +R GR VHG +R L+ + + +LID+
Sbjct: 92 LEAYARMHFLGLLGDNFTLPFVLKSCADLSRVCMGRCVHGQGLRVGLEGDFYVGASLIDM 151
Query: 264 YSKC-------------------------------QKVEVAQRVFDSMADRNLVCWNAMI 292
Y KC ++ VA+ +F+ M RN+V W AMI
Sbjct: 152 YVKCGVIGDARKLFDKMIVRDMASWNALIAGYMKEGEIGVAEDLFERMEHRNIVSWTAMI 211
Query: 293 LGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMI 352
G+ +G E+ + LF ++ G + P+ +T + V+ AC ++ L GR+
Sbjct: 212 SGYTQNGFAEQALGLFDEMLQD---GSEMKPNWVTIVSVLPACAQSAALERGRR-IHDFA 267
Query: 353 DFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQG 412
+ + N + +A +YA EA + ++ N+ I W ++++ G
Sbjct: 268 NGIGLHLNSSVQTALAGMYAKCYSLVEARCCFDMIAQNGKNL----IAWNTMITAYASHG 323
Query: 413 ----AVAMVERLAKSFVDMDPQDF-----------------SRYQFLLNVYAVAGQWEDV 451
AV++ E + ++ V D F + + + +++V + E
Sbjct: 324 CGVEAVSIFENMLRAGVQPDAVTFMGLLSGCSHSGLIDAGLNHFNDMGTIHSVEPRVEHY 383
Query: 452 ARVRELMKKRRMGRMPGCRLVDLKEVVEKLKVGHFWRGGMKEEVNKMMECRQSRSL 507
A V +L+ + RLV+ KE++ ++ + + G + CR R+L
Sbjct: 384 ACVVDLLGR-------AGRLVEAKELISQMPM----QAGPSVWGALLAACRSHRNL 428
>gi|224096249|ref|XP_002310592.1| predicted protein [Populus trichocarpa]
gi|222853495|gb|EEE91042.1| predicted protein [Populus trichocarpa]
Length = 747
Score = 242 bits (617), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 143/491 (29%), Positives = 259/491 (52%), Gaps = 26/491 (5%)
Query: 19 NNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQM 78
N S W + H + G D + F+ ++ N++I + ++ + F+ +
Sbjct: 172 NTSSWNAMISLH-MNCGRVDLALAQFELLSERDIVSWNSMIAGCNQHGFDNEALQFFSSI 230
Query: 79 IKN-GFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGA 137
+K+ P+ ++ S +CA + G HG ++ D V N+LI+MY G
Sbjct: 231 LKDTSLKPDRFSLASALSACANLEKLSFGKQIHGYIVRTMFDASGAVGNALISMYAKSGG 290
Query: 138 MDCARNMFVQ--MSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYS 195
++ AR + Q +S D+I++ ++++G+V+ GD++ A ++F+ + + +VV+W MI GY
Sbjct: 291 VEIARRIIEQSGISDLDVIAFTALLNGYVKLGDITPARQIFNSLKDPDVVAWTAMIVGYV 350
Query: 196 KSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRT--SLKPN 253
++G ++++F+ M+ G R N T+A++L+A N G+ +H +R+ +L P+
Sbjct: 351 QNGLNNDAIEVFKTMVSEGPRPNSFTLAAMLSASSSVTSLNHGKQIHASAIRSGEALSPS 410
Query: 254 IILDTALIDLYSKCQKVEVAQRVFDSM-ADRNLVCWNAMILGHCIHGKPEEGIKLFTALV 312
+ AL +Y+K + A++VF+ + +R+ V W +MI+ HG EE I+LF ++
Sbjct: 411 V--GNALTTMYAKAGSINGARKVFNLLRQNRDTVSWTSMIMALAQHGLGEEAIELFEQML 468
Query: 313 NGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYA 372
I PD IT++GV+ AC L+ +GR YF M + +KI P +HY CM +L+
Sbjct: 469 T-----LGIKPDHITYVGVLSACTHGGLVEQGRSYFDLMKNVHKIDPTLSHYACMVDLFG 523
Query: 373 GAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDF 432
A L +EA + + MP M + I W SLLS C+ V + + A+ + ++P +
Sbjct: 524 RAGLLQEAYKFVENMP-----MEPDVIAWGSLLSSCKVYKNVDLAKVAAERLLLIEPNNS 578
Query: 433 SRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLKEVVEKLKVGHFWRGGM- 491
Y L NVY+ G+W+D A++R+LMK R + + G V ++ V G+
Sbjct: 579 GAYSALANVYSSCGKWDDAAKIRKLMKARGVKKEQGLSWVQIQNKTHVFGV----EDGLH 634
Query: 492 --KEEVNKMME 500
K+E+ KMM+
Sbjct: 635 PQKDEIYKMMD 645
Score = 160 bits (406), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 125/525 (23%), Positives = 227/525 (43%), Gaps = 76/525 (14%)
Query: 2 KQLLQIQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKA 61
K + AH + + + +F +L A G + VF I + +I
Sbjct: 22 KTGFHLDAHDLFNEMPVKTTFSWNTILSGYAKQGKLEKAHQVFDLIPVRDSVSWTTIIVG 81
Query: 62 YSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFE 121
Y+ + + ++ M+K+ +P +T ++ SCA TG G H +K G+
Sbjct: 82 YNQMGRFEDAIKIFVDMVKDKVLPTQFTLTNVLASCAATGSRGIGKKVHSFVVKLGLHAC 141
Query: 122 LPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPE 181
+PV NSL+NMY G + A+ +F +M R+ SWN+++S H+ G + A F+++ E
Sbjct: 142 VPVANSLLNMYAKTGDLKMAKVVFDRMKLRNTSSWNAMISLHMNCGRVDLALAQFELLSE 201
Query: 182 RNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDK-TMASVLTACGRSARFNEGRS 240
R++VSWN MI+G ++ G +L+ F ++K D+ ++AS L+AC + + G+
Sbjct: 202 RDIVSWNSMIAGCNQHGFDNEALQFFSSILKDTSLKPDRFSLASALSACANLEKLSFGKQ 261
Query: 241 VHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQR------------------------- 275
+HGY VRT + + ALI +Y+K VE+A+R
Sbjct: 262 IHGYIVRTMFDASGAVGNALISMYAKSGGVEIARRIIEQSGISDLDVIAFTALLNGYVKL 321
Query: 276 --------VFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEIT 327
+F+S+ D ++V W AMI+G+ +G + I++F +V+ P+ T
Sbjct: 322 GDITPARQIFNSLKDPDVVAWTAMIVGYVQNGLNNDAIEVFKTMVS-----EGPRPNSFT 376
Query: 328 FIGVICACVRAELLTEGRKYFRQMI-DFYKIKPNFAHYWCMANLYAGAELTEEAEEILRK 386
++ A L G++ I + P+ + + +YA A A ++
Sbjct: 377 LAAMLSASSSVTSLNHGKQIHASAIRSGEALSPSVGN--ALTTMYAKAGSINGARKVFNL 434
Query: 387 MPEDNDNMSFES------------------------------IMWVSLLSLCRFQGAVAM 416
+ ++ D +S+ S I +V +LS C G V
Sbjct: 435 LRQNRDTVSWTSMIMALAQHGLGEEAIELFEQMLTLGIKPDHITYVGVLSACTHGGLVEQ 494
Query: 417 VER---LAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELM 458
L K+ +DP S Y +++++ AG ++ + E M
Sbjct: 495 GRSYFDLMKNVHKIDPT-LSHYACMVDLFGRAGLLQEAYKFVENM 538
Score = 140 bits (353), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 88/346 (25%), Positives = 165/346 (47%), Gaps = 40/346 (11%)
Query: 114 LKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAH 173
+K G+ F + +MN+L+N+Y G A ++F +M + SWN+I+SG+ + G + AH
Sbjct: 2 VKLGLTFSVYLMNNLMNLYAKTGFHLDAHDLFNEMPVKTTFSWNTILSGYAKQGKLEKAH 61
Query: 174 ELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSA 233
++FD++P R+ VSW +I GY++ G ++K+F +M+K T+ +VL +C +
Sbjct: 62 QVFDLIPVRDSVSWTTIIVGYNQMGRFEDAIKIFVDMVKDKVLPTQFTLTNVLASCAATG 121
Query: 234 RFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSM------------- 280
G+ VH + V+ L + + +L+++Y+K +++A+ VFD M
Sbjct: 122 SRGIGKKVHSFVVKLGLHACVPVANSLLNMYAKTGDLKMAKVVFDRMKLRNTSSWNAMIS 181
Query: 281 ------------------ADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSIS 322
++R++V WN+MI G HG E ++ F++++ T S+
Sbjct: 182 LHMNCGRVDLALAQFELLSERDIVSWNSMIAGCNQHGFDNEALQFFSSILKDT----SLK 237
Query: 323 PDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEE 382
PD + + AC E L+ G++ I Y ++ F + N E
Sbjct: 238 PDRFSLASALSACANLEKLSFGKQ-----IHGYIVRTMFDASGAVGNALISMYAKSGGVE 292
Query: 383 ILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMD 428
I R++ E + + I + +LL+ G + ++ S D D
Sbjct: 293 IARRIIEQSGISDLDVIAFTALLNGYVKLGDITPARQIFNSLKDPD 338
>gi|296090147|emb|CBI39966.3| unnamed protein product [Vitis vinifera]
Length = 726
Score = 241 bits (616), Expect = 5e-61, Method: Compositional matrix adjust.
Identities = 130/451 (28%), Positives = 239/451 (52%), Gaps = 19/451 (4%)
Query: 56 NAVIKAYSNSCVPDQGVVFYLQMIK------NGFMPNSYTFVSLFGSCAKTGCVERGGMC 109
N++I Y+ + ++ + Y Q IK N F P+ T S+ +C G +E G
Sbjct: 185 NSLISGYNANGYWNEALEIYYQSIKLFMEMVNQFKPDLLTITSILQACGHLGDLEFGKYV 244
Query: 110 HGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDM 169
H + +G + + N LINMY G + ++ +F M +D +SWNS+++ ++++G M
Sbjct: 245 HDYMITSGYECDTTASNILINMYAKCGNLLASQEVFSGMKCKDSVSWNSMINVYIQNGKM 304
Query: 170 SAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTAC 229
+ ++F+ M R++++WN +I+ S + L++ M G + TM S+L C
Sbjct: 305 GDSLKVFENMKARDIITWNTIIASCVHSEDCNLGLRMISRMRTEGVTPDMATMLSILPVC 364
Query: 230 GRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWN 289
A +G+ +HG + L+ ++ + LI++YSKC + + +VF M +++V W
Sbjct: 365 SLLAAKRQGKEIHGCIFKLGLESDVPVGNVLIEMYSKCGSLRNSFQVFKLMKTKDVVTWT 424
Query: 290 AMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFR 349
A+I ++G+ ++ ++ F G + I PD + F+ +I AC + L+ EG YF
Sbjct: 425 ALISACGMYGEGKKAVRAF-----GEMEAAGIVPDHVAFVAIIFACSHSGLVEEGLNYFH 479
Query: 350 QMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCR 409
+M YKI+P HY C+ +L + + L ++AE+ + MP D S +W +LLS CR
Sbjct: 480 RMKKDYKIEPRIEHYACVVDLLSRSALLDKAEDFILSMPLKPD-----SSIWGALLSACR 534
Query: 410 FQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGC 469
G + ER+++ ++++P D Y + N+YA G+W+ V +R+ +K R + + PGC
Sbjct: 535 MSGDTEIAERVSERIIELNPDDTGYYVLVSNIYAALGKWDQVRSIRKSIKARGLKKDPGC 594
Query: 470 RLVDLKEVVEKLKVG-HFWRGGMKEEVNKMM 499
++++ V G F+ EEVNK++
Sbjct: 595 SWMEIQNKVYVFGTGTKFFE--QFEEVNKLL 623
Score = 135 bits (339), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 95/350 (27%), Positives = 171/350 (48%), Gaps = 36/350 (10%)
Query: 3 QLLQIQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCIN-NPGTFCVNAVIKA 61
QL ++ + +IT GL ++ ++ L+ A F P + VF+ + + + N++I+A
Sbjct: 31 QLHKLHSLIITLGLH-HSVIFSAKLIAKYAHFRDPTSSFSVFRLASPSNNVYLWNSIIRA 89
Query: 62 YSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFE 121
+++ + + + Y + + P++YTF S+ +CA E H L G +
Sbjct: 90 LTHNGLFSEALSLYSETQRIRLQPDTYTFPSVINACAGLLDFEMAKSIHDRVLDMGFGSD 149
Query: 122 LPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPE 181
L + N+LI+MY F +D AR +F +M RD++SWNS++SG+ +G
Sbjct: 150 LYIGNALIDMYCRFNDLDKARKVFEEMPLRDVVSWNSLISGYNANG-------------- 195
Query: 182 RNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSV 241
WN + Y + S+KLF EM+ F+ + T+ S+L ACG G+ V
Sbjct: 196 ----YWNEALEIYYQ------SIKLFMEMVNQ-FKPDLLTITSILQACGHLGDLEFGKYV 244
Query: 242 HGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKP 301
H Y + + + + LI++Y+KC + +Q VF M ++ V WN+MI + +GK
Sbjct: 245 HDYMITSGYECDTTASNILINMYAKCGNLLASQEVFSGMKCKDSVSWNSMINVYIQNGKM 304
Query: 302 EEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQM 351
+ +K+F + + D IT+ +I +CV +E G + +M
Sbjct: 305 GDSLKVFENMK---------ARDIITWNTIIASCVHSEDCNLGLRMISRM 345
>gi|357154550|ref|XP_003576820.1| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
mitochondrial-like [Brachypodium distachyon]
Length = 657
Score = 241 bits (616), Expect = 5e-61, Method: Compositional matrix adjust.
Identities = 134/478 (28%), Positives = 241/478 (50%), Gaps = 11/478 (2%)
Query: 7 IQAHLITSGLFFNNSFWTINLLKH-SADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSNS 65
+ AH + L F + N L H A GS + F + + N +I Y+ +
Sbjct: 134 LAAHGVVVKLGFVQQIFVANALLHFHASAGSLRDSRRFFGEMADRNVVSWNTMIGGYAQA 193
Query: 66 CVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVM 125
+ + +M G + + +T VSL +C+ G +E G + H L +G + +
Sbjct: 194 GEVSEACALFGEMRHQGLLADVFTLVSLLFACSSEGNLEVGRLVHCHMLVSGSRVDRILG 253
Query: 126 NSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVV 185
N+L++MYG G + A F M +++++W S++ + G + A + F+ MPERN+V
Sbjct: 254 NALLDMYGKCGDLWMAHRCFDMMPIKNVVTWTSMLCAQAKHGSVDAVRDWFEQMPERNIV 313
Query: 186 SWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYT 245
SWN MIS Y + G +L L+ M G ++ T+A VL+ACG++ G+ +H Y
Sbjct: 314 SWNAMISCYVQCGRLHETLDLYNRMRSLGITPDEFTLAGVLSACGQNGDLASGKMIHCYV 373
Query: 246 VRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGI 305
P + L +L+D+Y++C +V+ A +F M ++N++ WN +I +HG+ +E +
Sbjct: 374 RDNFNDPGVTLLNSLLDMYARCGQVDTAIGLFTEMPNKNVISWNVIIGALAMHGRAQETV 433
Query: 306 KLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYW 365
F +V+ + SPDEITF+G++ AC LL G YF M Y ++P HY
Sbjct: 434 TFFRTMVS-----DAFSPDEITFVGLLSACSHGGLLEAGEYYFEAMARVYNVEPEVEHYG 488
Query: 366 CMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFV 425
CM +L +A +++ M D ++W +LL CR G V + + + K +
Sbjct: 489 CMVDLLGRRGHLAKAVNLIKDMSIKPD-----VVVWGALLGACRIHGNVEIGKLVIKQLL 543
Query: 426 DMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLKEVVEKLKV 483
+++ + + N++ QWED+ ++R+LMK++ + G +++K ++ + V
Sbjct: 544 ELEGITGGLFVLICNLFYETNQWEDMKKLRKLMKEQGTKKDMGVSSIEVKNIIHEFGV 601
Score = 149 bits (375), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 107/423 (25%), Positives = 185/423 (43%), Gaps = 65/423 (15%)
Query: 1 MKQLLQIQAHLITSGLFFNNSFWTINLLKHSADFGSPD------YTVLVFKCINNPGTFC 54
++ L QI AHL+ G F + S L+ + D + +F I P F
Sbjct: 23 IQHLDQIHAHLVVHG-FSDVSSVASQLIASYCTLSAGDRDGGLCHARRLFDRIPEPDRFM 81
Query: 55 VNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLAL 114
N +++AYSNS P + + + +++ G +PN +T + +C VE HG+ +
Sbjct: 82 YNTLVRAYSNSDCPQEALRLHRGVLQRGILPNEFTLPFVLKACTTVRAVEHALAAHGVVV 141
Query: 115 KNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHE 174
K G ++ V N+L++ + G++ +R F +M+ R+++SWN+++ G+ ++G++S A
Sbjct: 142 KLGFVQQIFVANALLHFHASAGSLRDSRRFFGEMADRNVVSWNTMIGGYAQAGEVSEA-- 199
Query: 175 LFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSAR 234
C+ LF EM G + T+ S+L AC
Sbjct: 200 ---------------------------CA--LFGEMRHQGLLADVFTLVSLLFACSSEGN 230
Query: 235 FNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILG 294
GR VH + + + + + IL AL+D+Y KC + +A R FD M +N+V W +M+
Sbjct: 231 LEVGRLVHCHMLVSGSRVDRILGNALLDMYGKCGDLWMAHRCFDMMPIKNVVTWTSMLCA 290
Query: 295 HCIHGK-----------PEEGIKLFTALVNGTVAGG---------------SISPDEITF 328
HG PE I + A+++ V G I+PDE T
Sbjct: 291 QAKHGSVDAVRDWFEQMPERNIVSWNAMISCYVQCGRLHETLDLYNRMRSLGITPDEFTL 350
Query: 329 IGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMP 388
GV+ AC + L G+ + D + P + ++YA + A + +MP
Sbjct: 351 AGVLSACGQNGDLASGKMIHCYVRDNFN-DPGVTLLNSLLDMYARCGQVDTAIGLFTEMP 409
Query: 389 EDN 391
N
Sbjct: 410 NKN 412
>gi|413918675|gb|AFW58607.1| hypothetical protein ZEAMMB73_481408 [Zea mays]
Length = 694
Score = 241 bits (616), Expect = 5e-61, Method: Compositional matrix adjust.
Identities = 150/472 (31%), Positives = 230/472 (48%), Gaps = 42/472 (8%)
Query: 7 IQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSNSC 66
+QA+ + GL + F +L+ A G LVF G NA++ AY +
Sbjct: 142 VQAYAVKRGLVADR-FVLSSLIHMYASCGDVAAARLVFDAAEESGVVMWNAIVAAYLKNG 200
Query: 67 VPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMN 126
+ V + M++ G + T VS+ +C + G + G G + G+ ++
Sbjct: 201 DWMEVVEMFKGMLEVGVAFDEVTLVSVVTACGRIGDAKLGKWVAGHVDEEGLARNPKLVT 260
Query: 127 SLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVS 186
+L++MY + G++ A LFD M R+VV+
Sbjct: 261 ALMDMYA-------------------------------KCGEIGKARRLFDGMQSRDVVA 289
Query: 187 WNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTV 246
W+ MISGY+++ +L LF EM + ND TM SVL+AC G+ VH Y
Sbjct: 290 WSAMISGYTQADQCREALGLFSEMQLARVEPNDVTMVSVLSACAVLGALETGKWVHSYVR 349
Query: 247 RTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIK 306
R L IL TAL+D Y+KC ++ A F+SM +N W A+I G +G+ E ++
Sbjct: 350 RKRLSLTTILGTALVDFYAKCGCIDDAVEAFESMPVKNSWTWTALIKGMATNGRGREALE 409
Query: 307 LFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWC 366
LF+++ I P ++TFIGV+ AC + L+ EGR++F M Y IKP HY C
Sbjct: 410 LFSSMRE-----AGIEPTDVTFIGVLMACSHSCLVEEGRRHFDSMARDYGIKPRVEHYGC 464
Query: 367 MANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVD 426
M +L A L +EA + +R MP + + +++W +LLS C V + E K +
Sbjct: 465 MVDLLGRAGLVDEAYQFIRTMPIEPN-----AVIWRALLSSCAVHRNVGIGEEALKQIIS 519
Query: 427 MDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLKEVV 478
++P Y L N+YA AGQW+D A VR+ MK R + + PGC L++L VV
Sbjct: 520 LNPSHSGDYVLLSNIYASAGQWKDAAMVRKEMKDRGIEKTPGCSLIELDGVV 571
Score = 138 bits (347), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 107/409 (26%), Positives = 190/409 (46%), Gaps = 52/409 (12%)
Query: 4 LLQIQAHLITSGLFFNNSFWTINLLKHSADFGSPD---YTVLVFKCINNP--GTFCVNAV 58
L Q+ A LI SG ++ +LL+ +A SP Y V +F+ P T C N +
Sbjct: 32 LPQLHAALIKSGELTGSAKSFHSLLEAAA--ASPTLLPYAVSLFRLGPRPPLSTPCYNVL 89
Query: 59 IKAYSNSCVPDQGVVFYLQMIK--NGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKN 116
++A+ ++ P+ + +++M+ + + +T SC++ ++ G A+K
Sbjct: 90 MRAFLHAGHPEDALHLFIEMLHAASACPADQHTAACALKSCSRMCALDVGRGVQAYAVKR 149
Query: 117 GVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELF 176
G+ + V++SLI+MY GD++AA +F
Sbjct: 150 GLVADRFVLSSLIHMYA-------------------------------SCGDVAAARLVF 178
Query: 177 DIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFN 236
D E VV WN +++ Y K+G+ +++F+ M++ G ++ T+ SV+TACGR
Sbjct: 179 DAAEESGVVMWNAIVAAYLKNGDWMEVVEMFKGMLEVGVAFDEVTLVSVVTACGRIGDAK 238
Query: 237 EGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHC 296
G+ V G+ L N L TAL+D+Y+KC ++ A+R+FD M R++V W+AMI G+
Sbjct: 239 LGKWVAGHVDEEGLARNPKLVTALMDMYAKCGEIGKARRLFDGMQSRDVVAWSAMISGYT 298
Query: 297 IHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYK 356
+ E + LF+ + V P+++T + V+ AC L G K+ + +
Sbjct: 299 QADQCREALGLFSEMQLARV-----EPNDVTMVSVLSACAVLGALETG-KWVHSYVRRKR 352
Query: 357 IKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLL 405
+ + + YA ++A E MP N S W +L+
Sbjct: 353 LSLTTILGTALVDFYAKCGCIDDAVEAFESMPVKN------SWTWTALI 395
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 74/305 (24%), Positives = 137/305 (44%), Gaps = 27/305 (8%)
Query: 180 PERNVVSWNIMISGYSKSGNPGCSLKLFREMMK--SGFRGNDKTMASVLTACGRSARFNE 237
P + +N+++ + +G+P +L LF EM+ S + T A L +C R +
Sbjct: 79 PPLSTPCYNVLMRAFLHAGHPEDALHLFIEMLHAASACPADQHTAACALKSCSRMCALDV 138
Query: 238 GRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCI 297
GR V Y V+ L + + ++LI +Y+ C V A+ VFD+ + +V WNA++ +
Sbjct: 139 GRGVQAYAVKRGLVADRFVLSSLIHMYASCGDVAAARLVFDAAEESGVVMWNAIVAAYLK 198
Query: 298 HGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKI 357
+G E +++F ++ VA DE+T + V+ AC R G K+ +D +
Sbjct: 199 NGDWMEVVEMFKGMLEVGVAF-----DEVTLVSVVTACGRIGDAKLG-KWVAGHVDEEGL 252
Query: 358 KPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLS------LCRFQ 411
N + ++YA +A + M S + + W +++S CR
Sbjct: 253 ARNPKLVTALMDMYAKCGEIGKARRLFDGM------QSRDVVAWSAMISGYTQADQCREA 306
Query: 412 GAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMG--RMPGC 469
+ +LA+ ++P D + +L+ AV G E V ++++R+ + G
Sbjct: 307 LGLFSEMQLAR----VEPNDVTMVS-VLSACAVLGALETGKWVHSYVRRKRLSLTTILGT 361
Query: 470 RLVDL 474
LVD
Sbjct: 362 ALVDF 366
>gi|449492842|ref|XP_004159118.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At1g05750, chloroplastic-like [Cucumis sativus]
Length = 525
Score = 241 bits (616), Expect = 5e-61, Method: Compositional matrix adjust.
Identities = 134/413 (32%), Positives = 218/413 (52%), Gaps = 13/413 (3%)
Query: 75 YLQMIKNGFMPNSYTFVSLFGSCAK--TGCVERGGMCHGLALKNGVDF-ELPVMNSLINM 131
+ +M G PN TF++L +CA + HG A K G+D + V +LI+M
Sbjct: 80 FTRMRLAGVEPNHITFITLLSACADFPSESFFFASSLHGYACKYGLDTGHVMVGTALIDM 139
Query: 132 YGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMI 191
Y + AR +F + ++ +SWN++++G +R+G++ A +LFD MP R+ +SW +I
Sbjct: 140 YSKCAQLGHARKVFYNLGVKNSVSWNTMLNGFMRNGEIELAIQLFDEMPTRDAISWTALI 199
Query: 192 SGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLK 251
+G K G +L+ F +M +SG + ++ +VL AC G VH + + K
Sbjct: 200 NGLLKHGYSEQALECFHQMQRSGVAADYVSIIAVLAACADLGALTLGLWVHRFVMPQEFK 259
Query: 252 PNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTAL 311
NI + +LID+YS+C +E A++VF MA R LV WN++I+G ++G +E ++ F A+
Sbjct: 260 DNIKISNSLIDMYSRCGCIEFARQVFVKMAKRTLVSWNSIIVGFAVNGFADESLEFFXAM 319
Query: 312 VNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLY 371
PD +++ G + AC A L+ +G + F M +KI P HY C+ +LY
Sbjct: 320 -----QKEGFKPDGVSYTGALTACSHAGLVNKGLELFDNMKSVHKITPRIEHYGCIVDLY 374
Query: 372 AGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQD 431
A E+A ++ +MP M ++ SLL+ CR G V + ERL K +DP+
Sbjct: 375 GRAGRLEDALNMIEEMP-----MKPNEVVLGSLLAACRTHGDVNLAERLMKHLFKLDPEG 429
Query: 432 FSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLKEVVEKLKVG 484
+ Y L N+YA G+W+ VR MK R + + PG V++ V + G
Sbjct: 430 DAYYVLLSNIYAAIGKWDGANNVRRTMKARGVQKKPGYSSVEIDGKVHEFVAG 482
Score = 79.7 bits (195), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 64/257 (24%), Positives = 112/257 (43%), Gaps = 51/257 (19%)
Query: 52 TFCVNAVIK-AYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCH 110
T +N ++K YS +Q + + QM ++G + + +++ +CA G + G H
Sbjct: 196 TALINGLLKHGYS-----EQALECFHQMQRSGVAADYVSIIAVLAACADLGALTLGLWVH 250
Query: 111 GLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMS 170
+ + + NSLI+MY G ++ AR +FV+M+ R L+SWNSI+ G
Sbjct: 251 RFVMPQEFKDNIKISNSLIDMYSRCGCIEFARQVFVKMAKRTLVSWNSIIVG-------- 302
Query: 171 AAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACG 230
++G++ SL+ F M K GF+ + + LTAC
Sbjct: 303 ------------------FAVNGFADE-----SLEFFXAMQKEGFKPDGVSYTGALTACS 339
Query: 231 RSARFNEG-------RSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADR 283
+ N+G +SVH T P I ++DLY + ++E A + + M +
Sbjct: 340 HAGLVNKGLELFDNMKSVHKIT------PRIEHYGCIVDLYGRAGRLEDALNMIEEMPMK 393
Query: 284 -NLVCWNAMILGHCIHG 299
N V +++ HG
Sbjct: 394 PNEVVLGSLLAACRTHG 410
>gi|326504712|dbj|BAK06647.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 658
Score = 241 bits (616), Expect = 5e-61, Method: Compositional matrix adjust.
Identities = 135/387 (34%), Positives = 207/387 (53%), Gaps = 14/387 (3%)
Query: 86 NSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMF 145
N+ V L CA+ V G H + LK+G D V +LI+ YG +D AR F
Sbjct: 276 NAALLVDLIKVCARHAAVLEGQQLHTVILKDGFDAHPFVQATLIHFYGSCDLLDIARMQF 335
Query: 146 VQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLK 205
+ SWN+++SG + M A +LFD MPER+ +SW+ ++SGY +SG+ +L+
Sbjct: 336 KLSDKSHIASWNALMSGLLHRNLMHEARQLFDDMPERDTISWSTLLSGYVQSGHSNKALQ 395
Query: 206 LFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYS 265
LF M+ +G ND T+AS L+A S +GR +H Y + S++ L LID+Y+
Sbjct: 396 LFYLMLGAGVEPNDVTLASTLSAVADSGMLEQGRFIHDYIISNSIQLTDNLSAGLIDMYA 455
Query: 266 KCQKVEVAQRVFDSMADR--NLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISP 323
KC V A ++F + + ++ WNA+I IHG ++LF L +I P
Sbjct: 456 KCGSVADAIQLFSHVKHKLSSVSPWNAIICSLAIHGHAHTSLELFLELQR-----TNIKP 510
Query: 324 DEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEI 383
+ +T+IGV+ AC A L+TEGR +F M Y I+P HY CM +L A EEAE +
Sbjct: 511 NSVTYIGVLNACCHAGLVTEGRHHFESMSREYGIQPTIKHYGCMVDLLGRAGHLEEAENL 570
Query: 384 LRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYA 443
++ MP M + ++W S+L+ R G VA+ E+ A+ +DP + L N++A
Sbjct: 571 IQMMP-----MRSDVVIWGSILAAARTHGNVALGEKAAEELAKIDPNHGASKVALSNIFA 625
Query: 444 VAGQWEDVARVRELMK--KRRMGRMPG 468
A +W +V+ VR+ ++ MGR G
Sbjct: 626 EAARWNNVSLVRKELQDEDENMGRFSG 652
Score = 124 bits (312), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 71/326 (21%), Positives = 147/326 (45%), Gaps = 37/326 (11%)
Query: 52 TFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHG 111
T V+ A + + + V + M+ PN T + + A G+ HG
Sbjct: 109 TVSYTTVLTALARAGHAEDAVAVFRGMLAQDVPPNEVTLAGVLTALALERPPVPVGVAHG 168
Query: 112 LALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSA 171
+ ++ G++ L V +L++ Y + AR +F QM ++ ++WN++++G++++G +
Sbjct: 169 VTVRRGLNGFLIVATNLVHAYAAASQVCFAREIFEQMPDKNTVTWNAMLNGYLKAGMLPM 228
Query: 172 AHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKS-GFRGNDKTMASVLTACG 230
A E+F +PER+ VSW +I GY ++ +L+ + MM RGN + ++ C
Sbjct: 229 AAEVFGRIPERDAVSWLTIIDGYIRADCTSEALRAYVAMMAEVDTRGNAALLVDLIKVCA 288
Query: 231 RSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEV------------------ 272
R A EG+ +H ++ + + LI Y C +++
Sbjct: 289 RHAAVLEGQQLHTVILKDGFDAHPFVQATLIHFYGSCDLLDIARMQFKLSDKSHIASWNA 348
Query: 273 -------------AQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGG 319
A+++FD M +R+ + W+ ++ G+ G + ++LF ++ G
Sbjct: 349 LMSGLLHRNLMHEARQLFDDMPERDTISWSTLLSGYVQSGHSNKALQLFYLML-----GA 403
Query: 320 SISPDEITFIGVICACVRAELLTEGR 345
+ P+++T + A + +L +GR
Sbjct: 404 GVEPNDVTLASTLSAVADSGMLEQGR 429
Score = 101 bits (252), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 76/290 (26%), Positives = 138/290 (47%), Gaps = 18/290 (6%)
Query: 79 IKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGV-DFELPVMNSLINMYGCFG- 136
+ +G P + VS S A+ + G H LA K+G+ V NSL+ Y
Sbjct: 1 MPSGGAPLAVFLVSSLKSGAR---LRHGEQLHALAAKSGLLASNTFVRNSLLAFYARLPS 57
Query: 137 --AMDCARNMF--VQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMIS 192
A AR++F + ++ RD + N++++ R+G + A + MP+R+ VS+ +++
Sbjct: 58 PQAPALARHLFDEIPLALRDPAAHNTLLASLARAGRLDLAQGMLAEMPQRDTVSYTTVLT 117
Query: 193 GYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKP 252
+++G+ ++ +FR M+ N+ T+A VLTA HG TVR L
Sbjct: 118 ALARAGHAEDAVAVFRGMLAQDVPPNEVTLAGVLTALALERPPVPVGVAHGVTVRRGLNG 177
Query: 253 NIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALV 312
+I+ T L+ Y+ +V A+ +F+ M D+N V WNAM+ G+ G ++F
Sbjct: 178 FLIVATNLVHAYAAASQVCFAREIFEQMPDKNTVTWNAMLNGYLKAGMLPMAAEVF---- 233
Query: 313 NGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFA 362
G D ++++ +I +RA+ +E + + M+ + N A
Sbjct: 234 -----GRIPERDAVSWLTIIDGYIRADCTSEALRAYVAMMAEVDTRGNAA 278
Score = 75.1 bits (183), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 60/266 (22%), Positives = 107/266 (40%), Gaps = 31/266 (11%)
Query: 43 VFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGC 102
+F + T + ++ Y S ++ + + M+ G PN T S + A +G
Sbjct: 365 LFDDMPERDTISWSTLLSGYVQSGHSNKALQLFYLMLGAGVEPNDVTLASTLSAVADSGM 424
Query: 103 VERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSG 162
+E+G H + N + + LI+MY G++ A +F
Sbjct: 425 LEQGRFIHDYIISNSIQLTDNLSAGLIDMYAKCGSVADAIQLF----------------S 468
Query: 163 HVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTM 222
HV+ H+L + P WN +I + G+ SL+LF E+ ++ + N T
Sbjct: 469 HVK-------HKLSSVSP------WNAIICSLAIHGHAHTSLELFLELQRTNIKPNSVTY 515
Query: 223 ASVLTACGRSARFNEGR-SVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMA 281
VL AC + EGR + ++P I ++DL + +E A+ + M
Sbjct: 516 IGVLNACCHAGLVTEGRHHFESMSREYGIQPTIKHYGCMVDLLGRAGHLEEAENLIQMMP 575
Query: 282 DR-NLVCWNAMILGHCIHGKPEEGIK 306
R ++V W +++ HG G K
Sbjct: 576 MRSDVVIWGSILAAARTHGNVALGEK 601
Score = 43.5 bits (101), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 31/132 (23%), Positives = 63/132 (47%), Gaps = 8/132 (6%)
Query: 56 NAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERG-GMCHGLAL 114
NA+I + + + +L++ + PNS T++ + +C G V G ++
Sbjct: 481 NAIICSLAIHGHAHTSLELFLELQRTNIKPNSVTYIGVLNACCHAGLVTEGRHHFESMSR 540
Query: 115 KNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSP--RDLISWNSIVSGHVRSGDMS-- 170
+ G+ + ++++ G G ++ A N+ +QM P D++ W SI++ G+++
Sbjct: 541 EYGIQPTIKHYGCMVDLLGRAGHLEEAENL-IQMMPMRSDVVIWGSILAAARTHGNVALG 599
Query: 171 --AAHELFDIMP 180
AA EL I P
Sbjct: 600 EKAAEELAKIDP 611
>gi|224107245|ref|XP_002314420.1| predicted protein [Populus trichocarpa]
gi|222863460|gb|EEF00591.1| predicted protein [Populus trichocarpa]
Length = 571
Score = 241 bits (616), Expect = 5e-61, Method: Compositional matrix adjust.
Identities = 139/428 (32%), Positives = 214/428 (50%), Gaps = 12/428 (2%)
Query: 43 VFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGC 102
VF+ I + +I Y + ++ Y M+ G P+ T + L +C +
Sbjct: 149 VFEMIPDKDIVSWGTIIDGYVRVERLREALMMYRLMVSTGLGPSEVTMIDLISACGRAMA 208
Query: 103 VERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSG 162
+ G H + +K D V ++I+ Y G ++ A + S N++++G
Sbjct: 209 IVEGQQLHCVVVKTSFDCYDFVQATVIHFYSACGRINEACFQLEFGMKDHVASRNALIAG 268
Query: 163 HVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTM 222
+R+ + A ELF+ MPER+V SW+ MISGY++S PG +L+LF M+ SG R N+ TM
Sbjct: 269 FIRNRIIDQARELFNEMPERDVFSWSTMISGYTQSDQPGMALELFHRMVTSGIRPNEVTM 328
Query: 223 ASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMAD 282
SV +A EGR H Y S+ N L ++ID+Y+KC + A VF + D
Sbjct: 329 VSVFSAIAALGTLKEGRWAHEYVHYNSIPLNDNLSASIIDMYAKCGSINTALEVFYQIRD 388
Query: 283 R--NLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAEL 340
+ + WN +I G HG + +++++ L I ITFIGV+ AC A L
Sbjct: 389 KASTVSPWNTIICGLATHGHAKLSLEIYSDLQRR-----HIKLSAITFIGVLSACCHAGL 443
Query: 341 LTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIM 400
+ G+ YF+ M Y I P+ HY CM +L A EE EE++R MP M + ++
Sbjct: 444 VGLGKSYFKSMKSKYNIDPDIRHYGCMVDLLGKAGRLEEVEELIRSMP-----MKADVVI 498
Query: 401 WVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKK 460
W LLS C+ + + ER A++ +DP L N+YA G+WED VR +M+
Sbjct: 499 WGMLLSACKTHRNITIGERAAENLAKLDPSHGPSRILLSNLYADVGRWEDAFLVRRVMQS 558
Query: 461 RRMGRMPG 468
RM R+PG
Sbjct: 559 HRMHRLPG 566
Score = 150 bits (379), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 109/482 (22%), Positives = 213/482 (44%), Gaps = 72/482 (14%)
Query: 35 GSPDYTVLVFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLF 94
G+ D +F+ + G +I + + + + Y +M G +PN T S+
Sbjct: 9 GNLDDARKLFEVMPQKGCVSYTTMIMGFVKNDFWGEAIKVYKEMRSVGVVPNEVTMASVI 68
Query: 95 GSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLI 154
+C + G + M HGL +K D + V +L+NMY ++ AR +F +M ++++
Sbjct: 69 SACCRVGRIWDCRMLHGLVIKMMFDGFVLVSTNLLNMYCASSSLGEARALFDEMQEKNVV 128
Query: 155 SWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSG 214
SWN +++G+ ++G + A E+F+++P++++VSW +I GY + +L ++R M+ +G
Sbjct: 129 SWNVMLNGYSKAGFANLAKEVFEMIPDKDIVSWGTIIDGYVRVERLREALMMYRLMVSTG 188
Query: 215 FRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQK----- 269
++ TM +++ACGR+ EG+ +H V+TS + +I YS C +
Sbjct: 189 LGPSEVTMIDLISACGRAMAIVEGQQLHCVVVKTSFDCYDFVQATVIHFYSACGRINEAC 248
Query: 270 --------------------------VEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEE 303
++ A+ +F+ M +R++ W+ MI G+ +P
Sbjct: 249 FQLEFGMKDHVASRNALIAGFIRNRIIDQARELFNEMPERDVFSWSTMISGYTQSDQPGM 308
Query: 304 GIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAH 363
++LF +V I P+E+T + V A L EGR + + + + I N
Sbjct: 309 ALELFHRMVT-----SGIRPNEVTMVSVFSAIAALGTLKEGR-WAHEYVHYNSIPLNDNL 362
Query: 364 YWCMANLYAGAELTEEAEEILRKMPEDNDNMS---------------------------- 395
+ ++YA A E+ ++ + +S
Sbjct: 363 SASIIDMYAKCGSINTALEVFYQIRDKASTVSPWNTIICGLATHGHAKLSLEIYSDLQRR 422
Query: 396 ---FESIMWVSLLSLCRFQGAVAMVERLAKSF---VDMDPQDFSRYQFLLNVYAVAGQWE 449
+I ++ +LS C G V + + KS ++DP D Y ++++ AG+ E
Sbjct: 423 HIKLSAITFIGVLSACCHAGLVGLGKSYFKSMKSKYNIDP-DIRHYGCMVDLLGKAGRLE 481
Query: 450 DV 451
+V
Sbjct: 482 EV 483
Score = 114 bits (285), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 63/214 (29%), Positives = 115/214 (53%), Gaps = 26/214 (12%)
Query: 159 IVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGN 218
++SG+V+SG++ A +LF++MP++ VS+ MI G+ K+ G ++K+++EM G N
Sbjct: 1 MISGYVKSGNLDDARKLFEVMPQKGCVSYTTMIMGFVKNDFWGEAIKVYKEMRSVGVVPN 60
Query: 219 DKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFD 278
+ TMASV++AC R R + R +HG ++ +++ T L+++Y + A+ +FD
Sbjct: 61 EVTMASVISACCRVGRIWDCRMLHGLVIKMMFDGFVLVSTNLLNMYCASSSLGEARALFD 120
Query: 279 SMADRNLVCWNAMILGHCIHG-----------KPEEGIKLFTALVNGTV----------- 316
M ++N+V WN M+ G+ G P++ I + +++G V
Sbjct: 121 EMQEKNVVSWNVMLNGYSKAGFANLAKEVFEMIPDKDIVSWGTIIDGYVRVERLREALMM 180
Query: 317 ----AGGSISPDEITFIGVICACVRAELLTEGRK 346
+ P E+T I +I AC RA + EG++
Sbjct: 181 YRLMVSTGLGPSEVTMIDLISACGRAMAIVEGQQ 214
>gi|449442178|ref|XP_004138859.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g21065-like [Cucumis sativus]
gi|449529652|ref|XP_004171812.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g21065-like [Cucumis sativus]
Length = 606
Score = 241 bits (616), Expect = 5e-61, Method: Compositional matrix adjust.
Identities = 141/509 (27%), Positives = 255/509 (50%), Gaps = 55/509 (10%)
Query: 1 MKQLLQIQAHLITSGLFFN----NSFWTINLLKHSADFGSPDYTVLVFKCINNP---GTF 53
+ +L QI H++ GL N F +I+ L H+ D+ + +F + F
Sbjct: 42 LPKLTQIHTHILKLGLHNNPLVLTKFASISSLIHATDYAAS----FLFSAEADTRLYDAF 97
Query: 54 CVNAVIKAYSNSC-VPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGL 112
N +I+AY+ + D+ + Y M+ + +PN +T+ + +CA + G HG
Sbjct: 98 LFNTLIRAYAQTGHSKDKALALYGIMLHDAILPNKFTYPFVLKACAGLEVLNLGQTVHGS 157
Query: 113 ALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAA 172
+K G D ++ V N++++MY C CA G +++A
Sbjct: 158 VVKFGFDCDIHVQNTMVHMYSC-----CA-------------------------GGINSA 187
Query: 173 HELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRS 232
++FD MP+ + V+W+ MI GY++ G ++ LFREM + ++ TM S+L+AC
Sbjct: 188 RKVFDEMPKSDSVTWSAMIGGYARVGRSTEAVALFREMQMAEVCPDEITMVSMLSACTDL 247
Query: 233 ARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMI 292
G+ + Y R + + + ALID+++KC + A ++F +M ++ +V W ++I
Sbjct: 248 GALELGKWIEAYIERHEIHKPVEVSNALIDMFAKCGDISKALKLFRAMNEKTIVSWTSVI 307
Query: 293 LGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMI 352
+G +HG+ +E LF + + VA PD++ FIG++ AC + L+ GR+YF M+
Sbjct: 308 VGMAMHGRGQEATCLFEEMTSSGVA-----PDDVAFIGLLSACSHSGLVERGREYFGSMM 362
Query: 353 DFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQG 412
YK+ P HY CM ++Y L +EA E +R MP + + ++ +L+S CR G
Sbjct: 363 KKYKLVPKIEHYGCMVDMYCRTGLVKEALEFVRNMPIEPN-----PVILRTLVSACRGHG 417
Query: 413 AVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLV 472
+ E++ K + +P S Y L N+YA WE ++RE+M+ + M ++PG ++
Sbjct: 418 EFKLGEKITKLLMKHEPLHESNYVLLSNIYAKTLSWEKKTKIREVMEVKGMKKVPGSTMI 477
Query: 473 DLKEVVEKLKVG---HFWRGGMKEEVNKM 498
++ + + G H + E V++M
Sbjct: 478 EIDNEIYEFVAGDKSHKQHKEIYEMVDEM 506
>gi|225435933|ref|XP_002267829.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g14170-like [Vitis vinifera]
Length = 455
Score = 241 bits (615), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 140/467 (29%), Positives = 238/467 (50%), Gaps = 42/467 (8%)
Query: 3 QLLQIQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAY 62
L + A L+ + L+ N + LL +S +++ VF + + + N +I +
Sbjct: 26 HLRHLHARLLRTSLYDNVILSSKLLLMYSQLGKLSPHSLSVFLHMPHRNIYSWNIIIGEF 85
Query: 63 SNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFEL 122
S S +P + + +LQM P+ +T + +CA +G V+ G HGL ++ G++ L
Sbjct: 86 SRSHLPHKSIDLFLQMRHFNQPPDVFTLPLVLRACAASGSVKLGVSVHGLCVEMGMEKSL 145
Query: 123 PVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPER 182
V ++L+ MY FG + AR LFD MPER
Sbjct: 146 FVASALVFMYVTFGKVLDAR-------------------------------VLFDEMPER 174
Query: 183 NVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVH 242
+ V W M++GY++ P +L +FR+M+ +G + M S+L ACG+ G+SVH
Sbjct: 175 DAVLWTAMLAGYAQHEEPMLALSVFRQMVSAGVALDGVVMISLLLACGQLGWLKHGKSVH 234
Query: 243 GYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPE 302
G+ R L + L AL+ Y KC + + +FD M +R+++ W+++ILG+ + G +
Sbjct: 235 GWITRRCLALGLNLGNALVYFYVKCAALGYSYNLFDKMPERDVISWSSIILGYGLSGNVD 294
Query: 303 EGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFA 362
+ LF + VAG + P+++TF+G + AC ++ YF +M+ Y + P
Sbjct: 295 IALDLFDRM---RVAG--VKPNDVTFLGALSACTHTGMVERAHTYF-EMMKEYGVAPELK 348
Query: 363 HYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAK 422
HY CM + A + E+AE + +MP + D +LL CR G + ER+AK
Sbjct: 349 HYACMVDCLGRAGMLEDAERFIEEMPVEADGAVLG-----ALLGGCRVHGNAEVGERVAK 403
Query: 423 SFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGC 469
+ ++P+ S Y L N+YA AG++ED +VR+LMK+R++ ++PGC
Sbjct: 404 KLMGLEPEKASNYVMLANIYAGAGRFEDAEKVRQLMKQRKLSKVPGC 450
>gi|225444744|ref|XP_002278128.1| PREDICTED: pentatricopeptide repeat-containing protein At1g11290
[Vitis vinifera]
Length = 597
Score = 241 bits (615), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 139/441 (31%), Positives = 222/441 (50%), Gaps = 41/441 (9%)
Query: 56 NAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALK 115
AVI Y + +G+ + +M+ +G PN+ T VS+ +CA + G + HG +K
Sbjct: 198 TAVIAGYVQNRYFKEGLGVFREMVGSGTQPNAVTLVSVLPACAGLEFLNLGKLIHGYGIK 257
Query: 116 NGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHEL 175
GVD ++ + N+LI +YG + G++ A L
Sbjct: 258 LGVDPDVSLTNALIALYG-------------------------------KCGNVETARSL 286
Query: 176 FDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARF 235
FD M +N+VSWN MI+ Y ++ ++KLFR M + TM SV++AC
Sbjct: 287 FDGMVVQNLVSWNAMIAAYEQNNAGANAVKLFRRMQAEKVDFDYITMVSVISACASLGAL 346
Query: 236 NEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGH 295
N GR +H R L+ N+ + ALID+Y+KC +++A+ VF+ + R++V W +MI
Sbjct: 347 NTGRWMHELVKRKGLEINVSITNALIDMYAKCGNIDLAREVFERLPCRSVVSWTSMIGAC 406
Query: 296 CIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFY 355
HG E+ +KLF+ + + V P+ TF V AC + L+ EGRK+F M+ Y
Sbjct: 407 ASHGHGEDALKLFSRMKDEGV-----KPNSFTFAAVFTACRHSGLVEEGRKHFESMMRDY 461
Query: 356 KIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVA 415
I P H CM +L A EA E + KMP + D +W +LL CR +
Sbjct: 462 SIMPGVEHCACMVDLLGRAGSLMEAYEFIDKMPVEPD-----VSVWGALLGSCRIHSNLE 516
Query: 416 MVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLK 475
+ E +A+ +DPQ + Y + N+YA AG+WED AR+R+LM++R + ++PG LV++
Sbjct: 517 LAELVAEKLFLLDPQTVTFYVLMSNIYAEAGRWEDAARLRKLMEERELKKIPGHSLVEVN 576
Query: 476 EVVEKLKVGHFWRGGMKEEVN 496
G + ++ +N
Sbjct: 577 RRFHTFLSGSRSQSSLRGSIN 597
Score = 155 bits (393), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 111/412 (26%), Positives = 184/412 (44%), Gaps = 43/412 (10%)
Query: 1 MKQLLQIQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIK 60
+ L +I A ++T+G N T ++ + DY +F + F N +I+
Sbjct: 42 LPDLSRIHALVVTNGCGQNLLLSTKLIITACCLAPTMDYARKMFDQMPKRDVFLWNTLIR 101
Query: 61 AYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDF 120
Y+++ ++ + Y M G P++YTF + SCA + G H +K+G D
Sbjct: 102 GYADAGPCEEALALYSNMHGAGLFPDNYTFPFVVRSCAVLSALREGKEVHCNIVKHGFDS 161
Query: 121 ELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMP 180
++ V +SL+ MY +SG+ +F M
Sbjct: 162 DVFVQSSLVAMYS-------------------------------QSGETLGMELVFGEMV 190
Query: 181 ERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRS 240
RN+VSW +I+GY ++ L +FREM+ SG + N T+ SVL AC N G+
Sbjct: 191 VRNIVSWTAVIAGYVQNRYFKEGLGVFREMVGSGTQPNAVTLVSVLPACAGLEFLNLGKL 250
Query: 241 VHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGK 300
+HGY ++ + P++ L ALI LY KC VE A+ +FD M +NLV WNAMI + +
Sbjct: 251 IHGYGIKLGVDPDVSLTNALIALYGKCGNVETARSLFDGMVVQNLVSWNAMIAAYEQNNA 310
Query: 301 PEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPN 360
+KLF + + D IT + VI AC L GR + +++ ++ N
Sbjct: 311 GANAVKLFRRM-----QAEKVDFDYITMVSVISACASLGALNTGR-WMHELVKRKGLEIN 364
Query: 361 FAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQG 412
+ + ++YA + A E+ ++P + W S++ C G
Sbjct: 365 VSITNALIDMYAKCGNIDLAREVFERLP------CRSVVSWTSMIGACASHG 410
>gi|225447376|ref|XP_002274886.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
chloroplastic-like [Vitis vinifera]
Length = 736
Score = 241 bits (615), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 149/493 (30%), Positives = 237/493 (48%), Gaps = 47/493 (9%)
Query: 12 ITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSNSCVPDQG 71
+ S ++ NS LL A FG +VF + N +I Y+ +
Sbjct: 192 LESDIYVGNS-----LLAMYAKFGDMGTARMVFDRMAERDLTSWNTMISGYAKNADSGTA 246
Query: 72 VVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGV-DFELPVMNSLIN 130
+ + M K G + T + L +CA V+ G + HG A++N + ++ NSLI
Sbjct: 247 FLVFDLMGKAGLFADCTTLLGLLSACADLKAVKEGKVIHGYAVRNSIGNYNKFFTNSLIE 306
Query: 131 MYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIM 190
MY C N V A LF+ + ++ VSWN M
Sbjct: 307 MY-------CNCNCMVD------------------------ARRLFERVRWKDTVSWNSM 335
Query: 191 ISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSL 250
I GY+++G+ SL+LFR M G + T +VL AC + A G S+H Y V+
Sbjct: 336 ILGYARNGDAFESLRLFRRMALDGSGPDQVTFIAVLGACDQIAALRYGMSIHSYLVKKGF 395
Query: 251 KPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTA 310
N I+ TAL+D+YSKC + ++RVFD M D++LV W+AM+ G+ +HG+ E I +
Sbjct: 396 DANTIVGTALVDMYSKCGSLACSRRVFDEMPDKSLVSWSAMVAGYGLHGRGREAISILDG 455
Query: 311 LVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANL 370
+ S+ PD F ++ AC A L+ EG++ F +M Y +KP +HY CM +L
Sbjct: 456 M-----KANSVIPDNGVFTSILSACSHAGLVVEGKEIFYKMEKEYNVKPALSHYSCMVDL 510
Query: 371 YAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQ 430
A +EA I+R M + S +W +LL+ R + + E A+ DM+P+
Sbjct: 511 LGRAGHLDEAYVIIRTM-----EIKPTSDIWAALLTASRLHKNIKLAEISAQKVFDMNPK 565
Query: 431 DFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLKEVVEKLKVGHFWRGG 490
S Y L N+YA +W+DV RVR +++++ + + PGC ++L +V + VG
Sbjct: 566 VVSSYICLSNIYAAEKRWDDVERVRAMVRRKGLKKSPGCSFIELDNMVHRFLVGDKSHQQ 625
Query: 491 MKEEVNKMMECRQ 503
++ K+ E +Q
Sbjct: 626 TEDIYAKLNELKQ 638
Score = 156 bits (395), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 107/379 (28%), Positives = 182/379 (48%), Gaps = 49/379 (12%)
Query: 2 KQLLQIQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKA 61
KQ Q+ AH+I+ + NN++ L A G ++F I +F N +I+
Sbjct: 76 KQGQQLHAHMISFSILENNTYLNTKLAAFYAGCGLMSQAEVIFDGIVLKNSFLWNFMIRG 135
Query: 62 YSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFE 121
Y+++ +P + +V Y +M+ G +++T+ + +C VE G H + G++ +
Sbjct: 136 YASNGLPMKSLVLYREMLCFGQRADNFTYPFVLKACGDLLLVEIGRRVHSEVVVCGLESD 195
Query: 122 LPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPE 181
+ V NSL+ MY FG M AR +F +M+ RDL SWN+++SG+ ++ D A +FD+M
Sbjct: 196 IYVGNSLLAMYAKFGDMGTARMVFDRMAERDLTSWNTMISGYAKNADSGTAFLVFDLMG- 254
Query: 182 RNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSV 241
K+G + T+ +L+AC EG+ +
Sbjct: 255 ------------------------------KAGLFADCTTLLGLLSACADLKAVKEGKVI 284
Query: 242 HGYTVRTSL-KPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGK 300
HGY VR S+ N +LI++Y C + A+R+F+ + ++ V WN+MILG+ +G
Sbjct: 285 HGYAVRNSIGNYNKFFTNSLIEMYCNCNCMVDARRLFERVRWKDTVSWNSMILGYARNGD 344
Query: 301 PEEGIKLFTAL-VNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKP 359
E ++LF + ++G+ PD++TFI V+ AC + L G I Y +K
Sbjct: 345 AFESLRLFRRMALDGS------GPDQVTFIAVLGACDQIAALRYGMS-----IHSYLVKK 393
Query: 360 NFAHYWCMANLYAGAELTE 378
F AN G L +
Sbjct: 394 GFD-----ANTIVGTALVD 407
Score = 49.7 bits (117), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 35/132 (26%), Positives = 64/132 (48%), Gaps = 8/132 (6%)
Query: 223 ASVLTACGRSARFNEGRSVHGYTVRTS-LKPNIILDTALIDLYSKCQKVEVAQRVFDSMA 281
++L + + F +G+ +H + + S L+ N L+T L Y+ C + A+ +FD +
Sbjct: 63 GALLQSFTNTKSFKQGQQLHAHMISFSILENNTYLNTKLAAFYAGCGLMSQAEVIFDGIV 122
Query: 282 DRNLVCWNAMILGHCIHGKPEEGIKLFTA-LVNGTVAGGSISPDEITFIGVICACVRAEL 340
+N WN MI G+ +G P + + L+ L G A D T+ V+ AC L
Sbjct: 123 LKNSFLWNFMIRGYASNGLPMKSLVLYREMLCFGQRA------DNFTYPFVLKACGDLLL 176
Query: 341 LTEGRKYFRQMI 352
+ GR+ +++
Sbjct: 177 VEIGRRVHSEVV 188
>gi|302143938|emb|CBI23043.3| unnamed protein product [Vitis vinifera]
Length = 539
Score = 241 bits (615), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 141/502 (28%), Positives = 249/502 (49%), Gaps = 83/502 (16%)
Query: 50 PGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMC 109
P +AVI ++ + + + +M GF PN+ T S+ +CA+ + G
Sbjct: 9 PNLVSWSAVIGGFAQNGYDKEALELLCRMQAAGFEPNARTLASVLPACARLQNLNLGKEI 68
Query: 110 HGLALKNGVDFELPVMNSLINMYG-CF------------------------------GAM 138
HG ++G V+N L+++Y C G +
Sbjct: 69 HGYVTRHGFMSNPFVVNGLVDVYRRCADMGSALKIFSGFSVKNVVSYNTMIVGYCENGNV 128
Query: 139 DCARNMFVQMS--PRDLISWNSIVSGH----VRSGDMSAAHELFDIMPERNVVSWNIMIS 192
+ A+ +F QM +D ISWNS++SG+ ++ D+ AA FD + ER+ +WN++IS
Sbjct: 129 EKAKELFDQMELVGKDTISWNSMISGYADNLLKCEDLKAAQLAFDGVTERDTATWNVLIS 188
Query: 193 GYS-----------------------------------KSGNPGCSLKLFREMMKSGFRG 217
GY+ ++G+ +L+LF EM S R
Sbjct: 189 GYACCNQLENIQNLIQKMKGDGFEPNVYTWNGIISGHVENGHNELALRLFTEMQTSSLRP 248
Query: 218 NDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVF 277
+ T+ +L AC R A G+ VH +++R + ++ + AL+D+Y+KC ++ A +V+
Sbjct: 249 DIYTVGIILPACARLATIARGKQVHAHSIRQGYELDVHIGAALVDMYAKCGSIKHAMQVY 308
Query: 278 DSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVR 337
+ +++ NLV NAM+ + +HG +EGI LF ++ G PD +TF+ V+ +CV
Sbjct: 309 NRISNPNLVSQNAMLTAYAMHGHGDEGIALFRNML-----GNGFRPDHVTFLSVLSSCVH 363
Query: 338 AELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFE 397
A + G ++F ++ +Y + P+ HY C+ +L + A +EA E+++K+P D
Sbjct: 364 AGAVETGHEFF-DLMTYYNVTPSLKHYTCIVDLLSRAGRLDEAYELVKKIPRKPD----- 417
Query: 398 SIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVREL 457
S+MW +LL C G V + E A+S ++++P + Y L N+YA AG+W D+ R R++
Sbjct: 418 SVMWGALLGGCVIWGNVELGEIAAESLIELEPNNTGNYVLLANLYAYAGRWHDLDRTRQM 477
Query: 458 MKKRRMGRMPGCRLVDLKEVVE 479
+K R M + PGC ++ +E +
Sbjct: 478 IKDRGMHKSPGCSWIEDREDIH 499
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 61/222 (27%), Positives = 103/222 (46%), Gaps = 12/222 (5%)
Query: 6 QIQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSNS 65
Q+ AH I G + L+ A GS + + V+ I+NP NA++ AY+
Sbjct: 271 QVHAHSIRQGYELDVHIGAA-LVDMYAKCGSIKHAMQVYNRISNPNLVSQNAMLTAYAMH 329
Query: 66 CVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVM 125
D+G+ + M+ NGF P+ TF+S+ SC G VE G L V L
Sbjct: 330 GHGDEGIALFRNMLGNGFRPDHVTFLSVLSSCVHAGAVETGHEFFDLMTYYNVTPSLKHY 389
Query: 126 NSLINMYGCFGAMDCARNMFVQMSPR--DLISWNSIVSGHVRSGDMS----AAHELFDIM 179
++++ G +D A + V+ PR D + W +++ G V G++ AA L ++
Sbjct: 390 TCIVDLLSRAGRLDEAYEL-VKKIPRKPDSVMWGALLGGCVIWGNVELGEIAAESLIELE 448
Query: 180 PERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKT 221
P N ++ ++ + Y+ +G L R+M+K RG K+
Sbjct: 449 P-NNTGNYVLLANLYAYAGRWH-DLDRTRQMIKD--RGMHKS 486
>gi|334185551|ref|NP_001189950.1| uncharacterized protein [Arabidopsis thaliana]
gi|75274240|sp|Q9LUJ2.1|PP249_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g22690
gi|9279687|dbj|BAB01244.1| unnamed protein product [Arabidopsis thaliana]
gi|332643145|gb|AEE76666.1| uncharacterized protein [Arabidopsis thaliana]
Length = 842
Score = 241 bits (615), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 134/431 (31%), Positives = 231/431 (53%), Gaps = 13/431 (3%)
Query: 56 NAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALK 115
NA+ Y + + + + M+ +G P+ + +S SC++ + G CHG L+
Sbjct: 306 NAMASNYVRQGLTREALGVFNLMMDSGVRPDRISMLSAISSCSQLRNILWGKSCHGYVLR 365
Query: 116 NGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHEL 175
NG + + N+LI+MY D A +F +MS + +++WNSIV+G+V +G++ AA E
Sbjct: 366 NGFESWDNICNALIDMYMKCHRQDTAFRIFDRMSNKTVVTWNSIVAGYVENGEVDAAWET 425
Query: 176 FDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMM-KSGFRGNDKTMASVLTACGRSAR 234
F+ MPE+N+VSWN +ISG + ++++F M + G + TM S+ +ACG
Sbjct: 426 FETMPEKNIVSWNTIISGLVQGSLFEEAIEVFCSMQSQEGVNADGVTMMSIASACGHLGA 485
Query: 235 FNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILG 294
+ + ++ Y + ++ ++ L T L+D++S+C E A +F+S+ +R++ W A I
Sbjct: 486 LDLAKWIYYYIEKNGIQLDVRLGTTLVDMFSRCGDPESAMSIFNSLTNRDVSAWTAAIGA 545
Query: 295 HCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDF 354
+ G E I+LF ++ + PD + F+G + AC L+ +G++ F M+
Sbjct: 546 MAMAGNAERAIELFDDMIE-----QGLKPDGVAFVGALTACSHGGLVQQGKEIFYSMLKL 600
Query: 355 YKIKPNFAHYWCMANLYAGAELTEEAEEILRKMP-EDNDNMSFESIMWVSLLSLCRFQGA 413
+ + P HY CM +L A L EEA +++ MP E ND ++W SLL+ CR QG
Sbjct: 601 HGVSPEDVHYGCMVDLLGRAGLLEEAVQLIEDMPMEPND------VIWNSLLAACRVQGN 654
Query: 414 VAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVD 473
V M A+ + P+ Y L NVYA AG+W D+A+VR MK++ + + PG +
Sbjct: 655 VEMAAYAAEKIQVLAPERTGSYVLLSNVYASAGRWNDMAKVRLSMKEKGLRKPPGTSSIQ 714
Query: 474 LKEVVEKLKVG 484
++ + G
Sbjct: 715 IRGKTHEFTSG 725
Score = 137 bits (345), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 95/341 (27%), Positives = 165/341 (48%), Gaps = 44/341 (12%)
Query: 1 MKQLLQIQAHLITSGLFFNNSFWTIN-LLKHSADFGSPD---YTVLVFKCINNPGT-FCV 55
+ +L L GL +N TI L+ S + G+ + + VF+ + GT F
Sbjct: 45 IDELKMFHRSLTKQGL--DNDVSTITKLVARSCELGTRESLSFAKEVFENSESYGTCFMY 102
Query: 56 NAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALK 115
N++I+ Y++S + ++ ++ +L+M+ +G P+ YTF +CAK+ G HGL +K
Sbjct: 103 NSLIRGYASSGLCNEAILLFLRMMNSGISPDKYTFPFGLSACAKSRAKGNGIQIHGLIVK 162
Query: 116 NGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHEL 175
G A+++FVQ NS+V + G++ +A ++
Sbjct: 163 MGY----------------------AKDLFVQ---------NSLVHFYAECGELDSARKV 191
Query: 176 FDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSG-FRGNDKTMASVLTACGRSAR 234
FD M ERNVVSW MI GY++ ++ LF M++ N TM V++AC +
Sbjct: 192 FDEMSERNVVSWTSMICGYARRDFAKDAVDLFFRMVRDEEVTPNSVTMVCVISACAKLED 251
Query: 235 FNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILG 294
G V+ + + ++ N ++ +AL+D+Y KC ++VA+R+FD NL NAM
Sbjct: 252 LETGEKVYAFIRNSGIEVNDLMVSALVDMYMKCNAIDVAKRLFDEYGASNLDLCNAMASN 311
Query: 295 HCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICAC 335
+ G E + +F +++ V PD I+ + I +C
Sbjct: 312 YVRQGLTREALGVFNLMMDSGV-----RPDRISMLSAISSC 347
Score = 106 bits (265), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 84/358 (23%), Positives = 152/358 (42%), Gaps = 60/358 (16%)
Query: 7 IQAHLITSGLFFNNSFWTINLLKH-SADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSNS 65
IQ H + + + + N L H A+ G D VF ++ ++I Y+
Sbjct: 154 IQIHGLIVKMGYAKDLFVQNSLVHFYAECGELDSARKVFDEMSERNVVSWTSMICGYARR 213
Query: 66 CVPDQGVVFYLQMIKNG-FMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPV 124
V + +M+++ PNS T V + +CAK +E G + +G++ +
Sbjct: 214 DFAKDAVDLFFRMVRDEEVTPNSVTMVCVISACAKLEDLETGEKVYAFIRNSGIEVNDLM 273
Query: 125 MNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNV 184
+++L++MY A+D A+ LFD N+
Sbjct: 274 VSALVDMYMKCNAIDVAK-------------------------------RLFDEYGASNL 302
Query: 185 VSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGY 244
N M S Y + G +L +F MM SG R + +M S +++C + G+S HGY
Sbjct: 303 DLCNAMASNYVRQGLTREALGVFNLMMDSGVRPDRISMLSAISSCSQLRNILWGKSCHGY 362
Query: 245 TVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGK---- 300
+R + + ALID+Y KC + + A R+FD M+++ +V WN+++ G+ +G+
Sbjct: 363 VLRNGFESWDNICNALIDMYMKCHRQDTAFRIFDRMSNKTVVTWNSIVAGYVENGEVDAA 422
Query: 301 -------PEEGIKLFTALVNGTVAGG----------------SISPDEITFIGVICAC 335
PE+ I + +++G V G ++ D +T + + AC
Sbjct: 423 WETFETMPEKNIVSWNTIISGLVQGSLFEEAIEVFCSMQSQEGVNADGVTMMSIASAC 480
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 49/162 (30%), Positives = 87/162 (53%), Gaps = 4/162 (2%)
Query: 187 WNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTV 246
+N +I GY+ SG ++ LF MM SG + T L+AC +S G +HG V
Sbjct: 102 YNSLIRGYASSGLCNEAILLFLRMMNSGISPDKYTFPFGLSACAKSRAKGNGIQIHGLIV 161
Query: 247 RTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIK 306
+ ++ + +L+ Y++C +++ A++VFD M++RN+V W +MI G+ ++ +
Sbjct: 162 KMGYAKDLFVQNSLVHFYAECGELDSARKVFDEMSERNVVSWTSMICGYARRDFAKDAVD 221
Query: 307 LFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYF 348
LF +V ++P+ +T + VI AC + E L G K +
Sbjct: 222 LFFRMVRDE----EVTPNSVTMVCVISACAKLEDLETGEKVY 259
>gi|449443656|ref|XP_004139593.1| PREDICTED: pentatricopeptide repeat-containing protein At1g05750,
chloroplastic-like [Cucumis sativus]
Length = 525
Score = 241 bits (615), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 134/413 (32%), Positives = 218/413 (52%), Gaps = 13/413 (3%)
Query: 75 YLQMIKNGFMPNSYTFVSLFGSCAK--TGCVERGGMCHGLALKNGVDF-ELPVMNSLINM 131
+ +M G PN TF++L +CA + HG A K G+D + V +LI+M
Sbjct: 80 FTRMRLAGVEPNHITFITLLSACADFPSESFFFASSLHGYACKYGLDTGHVMVGTALIDM 139
Query: 132 YGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMI 191
Y + AR +F + ++ +SWN++++G +R+G++ A +LFD MP R+ +SW +I
Sbjct: 140 YSKCAQLGHARKVFYNLGVKNSVSWNTMLNGFMRNGEIELAIQLFDEMPTRDAISWTALI 199
Query: 192 SGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLK 251
+G K G +L+ F +M +SG + ++ +VL AC G VH + + K
Sbjct: 200 NGLLKHGYSEQALECFHQMQRSGVAADYVSIIAVLAACADLGALTLGLWVHRFVMPQEFK 259
Query: 252 PNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTAL 311
NI + +LID+YS+C +E A++VF MA R LV WN++I+G ++G +E ++ F A+
Sbjct: 260 DNIKISNSLIDMYSRCGCIEFARQVFVKMAKRTLVSWNSIIVGFAVNGFADESLEFFYAM 319
Query: 312 VNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLY 371
PD +++ G + AC A L+ +G + F M +KI P HY C+ +LY
Sbjct: 320 -----QKEGFKPDGVSYTGALTACSHAGLVNKGLELFDNMKSVHKITPRIEHYGCIVDLY 374
Query: 372 AGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQD 431
A E+A ++ +MP M ++ SLL+ CR G V + ERL K +DP+
Sbjct: 375 GRAGRLEDALNMIEEMP-----MKPNEVVLGSLLAACRTHGDVNLAERLMKHLFKLDPEG 429
Query: 432 FSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLKEVVEKLKVG 484
+ Y L N+YA G+W+ VR MK R + + PG V++ V + G
Sbjct: 430 DAYYVLLSNIYAAIGKWDGANNVRRTMKARGVQKKPGYSSVEIDGKVHEFVAG 482
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 64/257 (24%), Positives = 112/257 (43%), Gaps = 51/257 (19%)
Query: 52 TFCVNAVIK-AYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCH 110
T +N ++K YS +Q + + QM ++G + + +++ +CA G + G H
Sbjct: 196 TALINGLLKHGYS-----EQALECFHQMQRSGVAADYVSIIAVLAACADLGALTLGLWVH 250
Query: 111 GLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMS 170
+ + + NSLI+MY G ++ AR +FV+M+ R L+SWNSI+ G
Sbjct: 251 RFVMPQEFKDNIKISNSLIDMYSRCGCIEFARQVFVKMAKRTLVSWNSIIVG-------- 302
Query: 171 AAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACG 230
++G++ SL+ F M K GF+ + + LTAC
Sbjct: 303 ------------------FAVNGFADE-----SLEFFYAMQKEGFKPDGVSYTGALTACS 339
Query: 231 RSARFNEG-------RSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADR 283
+ N+G +SVH T P I ++DLY + ++E A + + M +
Sbjct: 340 HAGLVNKGLELFDNMKSVHKIT------PRIEHYGCIVDLYGRAGRLEDALNMIEEMPMK 393
Query: 284 -NLVCWNAMILGHCIHG 299
N V +++ HG
Sbjct: 394 PNEVVLGSLLAACRTHG 410
>gi|357112521|ref|XP_003558057.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Brachypodium distachyon]
Length = 656
Score = 241 bits (615), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 139/447 (31%), Positives = 236/447 (52%), Gaps = 9/447 (2%)
Query: 35 GSPDYTVLVFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLF 94
G D VF F A+I + + + + + + M + + + VS+
Sbjct: 214 GMVDEARRVFDAAECRDIFTWTAMISCFERNDMFAEALHVFSCMRRERWHVDEPLMVSVV 273
Query: 95 GSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLI 154
+CA++ ++ G MCHGL ++ G+ ++ V N+LI+MY + AR +F D
Sbjct: 274 SACAQSEVIQNGQMCHGLVIRAGLCSQVNVQNALIHMYSSCLDVFAARRLFDSGECLDQY 333
Query: 155 SWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSG 214
SWNS+++G++++G + A LF MP ++ VSW+ +ISG ++ +L +F M G
Sbjct: 334 SWNSMIAGYLKNGHVKDAMALFSAMPNKDNVSWSTVISGCVQNNQSSDALTVFDNMQAQG 393
Query: 215 FRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQ 274
R ++ T+ SV++AC + +G+SVH Y + +++L T+LI++Y KC +E A
Sbjct: 394 IRPDEVTIVSVISACTNLSALEKGKSVHEYIKQNQYYVSLVLGTSLINMYMKCGCLEAAL 453
Query: 275 RVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICA 334
F+ M ++ CWNA+I+G ++G + + +F+ + A + +P+EITF GV+ A
Sbjct: 454 EAFNIMEEKGTPCWNAVIVGLAMNGLVMKSLDMFSEM----EASDTATPNEITFTGVLSA 509
Query: 335 CVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNM 394
C A L+ EGR +F+ M Y+I PN HY CM +L A +EAE++++ MP M
Sbjct: 510 CRHAGLVDEGRHFFKLMQHRYQIVPNIRHYGCMVDLLGRAGYVKEAEDMIQSMP-----M 564
Query: 395 SFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARV 454
S + W +LL C G + ER+ + V+ DP L N+YA G W+ V +
Sbjct: 565 SPDVPAWGALLGACWKHGEYEVGERVGRKLVNRDPLHDGFQTMLSNIYAKEGMWQSVDDL 624
Query: 455 RELMKKRRMGRMPGCRLVDLKEVVEKL 481
R MK+R + ++ G +V E L
Sbjct: 625 RGSMKQRHVQKVSGHSVVKSSHSYEIL 651
Score = 148 bits (374), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 113/412 (27%), Positives = 181/412 (43%), Gaps = 66/412 (16%)
Query: 2 KQLLQIQAHLITSGLFFNNSFWTINLLKHSADFGSP---DYTVLVFKCINNPGTFCVNAV 58
+ LLQI A I SGL + + LL SA P +++ + + + P F N +
Sbjct: 18 RHLLQIHAQFIASGLLADAFAASRLLLFTSASRLLPLPFHHSLRLLRLVRYPNAFSCNTL 77
Query: 59 IKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGV 118
+K+ +P + Y + P+SYT L +CA V G H A+ +G
Sbjct: 78 LKSALIGGMPHLCLPLYASLPAP---PDSYTHPILAAACASRKDVIEGRQVHAHAVSHGF 134
Query: 119 DFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDI 178
L + N+LI MY G + AR +F D +SWN+I++ +V +GD+ A E+F
Sbjct: 135 GDNLYLRNALIFMYSACGCLWDARRVFDAGPVWDAVSWNTILAAYVHAGDVDQAVEVFAQ 194
Query: 179 MPERN-------------------------------VVSWNIMISGYSKSGNPGCSLKLF 207
MP+RN + +W MIS + ++ +L +F
Sbjct: 195 MPKRNATAVSSMVSLFGRRGMVDEARRVFDAAECRDIFTWTAMISCFERNDMFAEALHVF 254
Query: 208 REMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKC 267
M + + ++ M SV++AC +S G+ HG +R L + + ALI +YS C
Sbjct: 255 SCMRRERWHVDEPLMVSVVSACAQSEVIQNGQMCHGLVIRAGLCSQVNVQNALIHMYSSC 314
Query: 268 QKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVN------GTVAGG-- 319
V A+R+FDS + WN+MI G+ +G ++ + LF+A+ N TV G
Sbjct: 315 LDVFAARRLFDSGECLDQYSWNSMIAGYLKNGHVKDAMALFSAMPNKDNVSWSTVISGCV 374
Query: 320 ------------------SISPDEITFIGVICACVRAELLTEGR---KYFRQ 350
I PDE+T + VI AC L +G+ +Y +Q
Sbjct: 375 QNNQSSDALTVFDNMQAQGIRPDEVTIVSVISACTNLSALEKGKSVHEYIKQ 426
>gi|224058579|ref|XP_002299552.1| predicted protein [Populus trichocarpa]
gi|222846810|gb|EEE84357.1| predicted protein [Populus trichocarpa]
Length = 505
Score = 241 bits (615), Expect = 7e-61, Method: Compositional matrix adjust.
Identities = 147/480 (30%), Positives = 247/480 (51%), Gaps = 21/480 (4%)
Query: 3 QLLQIQAHLITSGLFFNNSFWTINLLKHSA--DFGSPDYTVLVFKCINNPGTFCVNAVIK 60
+ Q+ A L G F N LL +S+ + + +Y +F NP TF N +I+
Sbjct: 40 EFAQLHARLTKLG-FIKNPLALTRLLCYSSISQYANINYAQSIFNFDKNPNTFAYNVMIR 98
Query: 61 AYSNSCVPDQGVVFYLQMIKNGFM-PNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVD 119
Y+ P+ + + M+ N N TF + +C++ +E G HGL K+G+
Sbjct: 99 GYAQREKPENALSLFYSMLCNANSGQNKLTFPFVLKACSQVRAIEEGKQVHGLVFKHGLS 158
Query: 120 FELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIM 179
+L V NSLI+MY G + A +F ++ D++SWNS++SG V G + ++FD M
Sbjct: 159 EDLFVQNSLISMYSSCGLIGFACQVFNKIDDPDVVSWNSMISGLVDLGFVEEGKQMFDRM 218
Query: 180 PERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGR 239
+R++V+WN +I GY K+G + +LF +M TM SVLTAC +G
Sbjct: 219 SKRSLVTWNCLIDGYVKAGLLMEARELFDQM--------RFTMVSVLTACSYLGALEQGE 270
Query: 240 SVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHG 299
+ + + + N +L TAL+++++KC +E A VF S+ +R++ WN++I HG
Sbjct: 271 WMQAHIEKNGIDVNSVLGTALVEMFAKCGSIERALSVFKSIEERDVGAWNSIIHKLAAHG 330
Query: 300 KPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKP 359
+E +F+ ++ D I F+G++ C L+ EG+++F+ M + Y + P
Sbjct: 331 HGQEAFAIFSDMLRSNTL-----LDGIIFLGLLSVCRHLGLVDEGKRFFQLMSEEYGLVP 385
Query: 360 NFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSL-CRFQGAVAMVE 418
HY CM +L A+L EEA +++ M MW +LL + C+ + V M E
Sbjct: 386 KVEHYGCMVDLLCHADLLEEARDLIDS--SHASQMKSSVPMWGALLGVSCQLKNIV-MGE 442
Query: 419 RLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLKEVV 478
AK + +DP D + Y L N+Y+ AG +E VR MKK+ + ++PG +++ +V
Sbjct: 443 YAAKHLLQLDPFDGNCYTVLSNLYSAAGLYEKAIEVRNEMKKQGLEKIPGSSSMEIDGLV 502
>gi|116309314|emb|CAH66401.1| OSIGBa0155K12.4 [Oryza sativa Indica Group]
Length = 486
Score = 241 bits (615), Expect = 7e-61, Method: Compositional matrix adjust.
Identities = 131/363 (36%), Positives = 206/363 (56%), Gaps = 18/363 (4%)
Query: 124 VMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERN 183
V N+LI++Y D AR +F +M D++S N++V G+V++G + A +F+ MPER+
Sbjct: 135 VSNALISLYARSALPDSARRVFDRMRAPDVVSHNALVHGYVKAGRLGLAVRVFEGMPERD 194
Query: 184 VVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHG 243
VSW +++G +K+G +++LF M + G+R +D +A+VL+ C + ++G+ VH
Sbjct: 195 AVSWGTVVAGCAKAGRLEKAVRLFDRMRREGYRPDDVALAAVLSCCAQLGALDKGQEVHE 254
Query: 244 YTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEE 303
Y RT +PN+ L T ++DLY+KC +VEVA+ VFD+ ++N+ WNA+I+G +HG
Sbjct: 255 YVRRTRPRPNVYLCTGIVDLYAKCGRVEVAREVFDACPEKNVFTWNALIVGLAMHGHGTV 314
Query: 304 GIKLFT-ALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFA 362
+ F LV G PD TF+GV+ C A L+ R+ F +M + +
Sbjct: 315 ALDYFDRMLVEG------FRPDGTTFLGVLIGCSHAGLVDTARRIFYEMQHNHGVPRELK 368
Query: 363 HYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQG-AVAMVERLA 421
HY CMA+L A L +EA E++ MP M ++ +W +L+ CR G V E A
Sbjct: 369 HYGCMADLLGRAGLIDEAMEMISSMP-----MEADTYVWGGILAGCRMHGNNVEFAEVAA 423
Query: 422 KSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLKEVVEKL 481
+ ++++P D Y + +YA AG+WEDVARVR R M M G R V + +L
Sbjct: 424 RRLLELNPDDGGVYSAMAGIYADAGRWEDVARVR-----RSMDEMVGMRNVGRSSIAMEL 478
Query: 482 KVG 484
K G
Sbjct: 479 KDG 481
Score = 69.3 bits (168), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 64/287 (22%), Positives = 121/287 (42%), Gaps = 41/287 (14%)
Query: 50 PGTFCVNAVIKAYSNSCVPDQGVVFYLQM----------IKNGF---------------M 84
P NA+I Y+ S +PD + +M + +G+ M
Sbjct: 131 PFPHVSNALISLYARSALPDSARRVFDRMRAPDVVSHNALVHGYVKAGRLGLAVRVFEGM 190
Query: 85 P--NSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCAR 142
P ++ ++ ++ CAK G +E+ + G + + ++++ GA+D +
Sbjct: 191 PERDAVSWGTVVAGCAKAGRLEKAVRLFDRMRREGYRPDDVALAAVLSCCAQLGALDKGQ 250
Query: 143 NM--FVQMS-PR-DLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSG 198
+ +V+ + PR ++ IV + + G + A E+FD PE+NV +WN +I G + G
Sbjct: 251 EVHEYVRRTRPRPNVYLCTGIVDLYAKCGRVEVAREVFDACPEKNVFTWNALIVGLAMHG 310
Query: 199 NPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSV-----HGYTVRTSLKPN 253
+ +L F M+ GFR + T VL C + + R + H + V LK
Sbjct: 311 HGTVALDYFDRMLVEGFRPDGTTFLGVLIGCSHAGLVDTARRIFYEMQHNHGVPRELKHY 370
Query: 254 IILDTALIDLYSKCQKVEVAQRVFDSMA-DRNLVCWNAMILGHCIHG 299
+ DL + ++ A + SM + + W ++ G +HG
Sbjct: 371 ----GCMADLLGRAGLIDEAMEMISSMPMEADTYVWGGILAGCRMHG 413
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 45/180 (25%), Positives = 76/180 (42%), Gaps = 31/180 (17%)
Query: 240 SVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHG 299
S+H V +L P + ALI LY++ + A+RVFD M ++V NA++ G+ G
Sbjct: 119 SLHAVAVTRNLLPFPHVSNALISLYARSALPDSARRVFDRMRAPDVVSHNALVHGYVKAG 178
Query: 300 KPEEGIKLFTALVN------GTVAGG--------------------SISPDEITFIGVIC 333
+ +++F + GTV G PD++ V+
Sbjct: 179 RLGLAVRVFEGMPERDAVSWGTVVAGCAKAGRLEKAVRLFDRMRREGYRPDDVALAAVLS 238
Query: 334 ACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWC--MANLYAGAELTEEAEEILRKMPEDN 391
C + L +G++ + + + +PN Y C + +LYA E A E+ PE N
Sbjct: 239 CCAQLGALDKGQE-VHEYVRRTRPRPNV--YLCTGIVDLYAKCGRVEVAREVFDACPEKN 295
Score = 40.0 bits (92), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 38/164 (23%), Positives = 68/164 (41%), Gaps = 8/164 (4%)
Query: 43 VFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGC 102
VF F NA+I + + ++ +M+ GF P+ TF+ + C+ G
Sbjct: 287 VFDACPEKNVFTWNALIVGLAMHGHGTVALDYFDRMLVEGFRPDGTTFLGVLIGCSHAGL 346
Query: 103 VERG-GMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMS-PRDLISWNSIV 160
V+ + + + +GV EL + ++ G G +D A M M D W I+
Sbjct: 347 VDTARRIFYEMQHNHGVPRELKHYGCMADLLGRAGLIDEAMEMISSMPMEADTYVWGGIL 406
Query: 161 SGHVRSGD-----MSAAHELFDIMPERNVVSWNIMISGYSKSGN 199
+G G+ AA L ++ P+ V ++ M Y+ +G
Sbjct: 407 AGCRMHGNNVEFAEVAARRLLELNPDDGGV-YSAMAGIYADAGR 449
>gi|147771061|emb|CAN60969.1| hypothetical protein VITISV_033859 [Vitis vinifera]
Length = 722
Score = 241 bits (615), Expect = 7e-61, Method: Compositional matrix adjust.
Identities = 142/442 (32%), Positives = 226/442 (51%), Gaps = 14/442 (3%)
Query: 35 GSPDYTVLVFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLF 94
G Y +F I+ P TF N +I+ YS S P Q V + QM +N P+ +TF L
Sbjct: 289 GCLHYADRLFSQIHQPNTFFYNTLIRGYSKSSSPSQSVQLFNQMRRNCVDPDGFTFTFLL 348
Query: 95 GSCAKT----GCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSP 150
++ + HG LK G F L VMN+LI++Y G A +F +M
Sbjct: 349 KGRSRMRIDLPLIVASDEIHGAVLKLGFCFHLFVMNALIHLYAARGVPAAAHQVFNEMVG 408
Query: 151 RDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREM 210
D++SW+ +V HVR+G++ A ++FD MPER+VVSW +M+SGY+++ +L+LFREM
Sbjct: 409 ADVVSWSGLVVAHVRAGELELARQVFDEMPERDVVSWTVMVSGYAQAKRSREALELFREM 468
Query: 211 MKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKV 270
G R ++ M V++AC G VH Y + L ALID+Y+KC +
Sbjct: 469 RDVGVRPDEVAMVIVISACTSLGDLETGFEVHRYIDENGFGWMVSLCNALIDMYAKCGCM 528
Query: 271 EVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIG 330
++A +VF++M ++L+ WN+MI HG E+ ++FT ++ I PD +TF+
Sbjct: 529 DLAWQVFNNMERKSLITWNSMISACANHGNAEDAFRVFTLMLX-----SGIRPDGVTFLA 583
Query: 331 VICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPED 390
++ A + +G F M Y ++ HY CM ++ A EEA +++ M
Sbjct: 584 LLTAYTHKGWVDDGYGLFESMQRDYGVEAGVEHYGCMVDMLGRAGRLEEAYKLITSM--- 640
Query: 391 NDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWED 450
+M ++W +LL+ CR G V M ER+ K +++ P + Y L ++Y AG+ +
Sbjct: 641 --SMPCNDVVWGALLAACRIYGDVEMGERVLKKLIELKPDEGGYYILLRDIYVAAGRRAE 698
Query: 451 VARVRELMKKRRMGRMPGCRLV 472
+R M + GC V
Sbjct: 699 AIELRRAMDVNGAKKTLGCSWV 720
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 89/374 (23%), Positives = 152/374 (40%), Gaps = 66/374 (17%)
Query: 35 GSPDYTVLVFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLF 94
G Y +F I+ P TF N +I+ YS S P Q V + QM +N P+ +TF L
Sbjct: 135 GCLHYADRLFSQIHQPNTFFYNTLIRGYSKSSSPSQSVQLFNQMRRNCVDPDGFTFTFLL 194
Query: 95 GSCAKT----GCVERGGMCHGLA------------LKNGVDFELPVMNSLINMYGCFGAM 138
++ + HG + N V LP SL +M AM
Sbjct: 195 KGRSRMRIDLPLIVASDEIHGAGVDYDKYKTLKSYISNKVMHMLPTSQSLASMAEACLAM 254
Query: 139 DCARNMFVQMSPRDLISWNSIVSGHVR------SGDMSAAHELFDIMPERNVVSWNIMIS 192
+ + + +L + +++ R +G + A LF + + N +N +I
Sbjct: 255 QALKLIHARAFRANLHNHALVLAKIFRFAAVSPNGCLHYADRLFSQIHQPNTFFYNTLIR 314
Query: 193 GYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRS-ARFN-----EGRSVHGYTV 246
GYSKS +P S++LF +M ++ + T +L GRS R + +HG +
Sbjct: 315 GYSKSSSPSQSVQLFNQMRRNCVDPDGFTFTFLLK--GRSRMRIDLPLIVASDEIHGAVL 372
Query: 247 RTSLKPNIILDTALIDLYS-------------------------------KCQKVEVAQR 275
+ ++ + ALI LY+ + ++E+A++
Sbjct: 373 KLGFCFHLFVMNALIHLYAARGVPAAAHQVFNEMVGADVVSWSGLVVAHVRAGELELARQ 432
Query: 276 VFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICAC 335
VFD M +R++V W M+ G+ + E ++LF + + + PDE+ + VI AC
Sbjct: 433 VFDEMPERDVVSWTVMVSGYAQAKRSREALELFREMRD-----VGVRPDEVAMVIVISAC 487
Query: 336 VRAELLTEGRKYFR 349
L G + R
Sbjct: 488 TSLGDLETGFEVHR 501
>gi|224126745|ref|XP_002319916.1| predicted protein [Populus trichocarpa]
gi|222858292|gb|EEE95839.1| predicted protein [Populus trichocarpa]
Length = 606
Score = 241 bits (615), Expect = 7e-61, Method: Compositional matrix adjust.
Identities = 136/437 (31%), Positives = 227/437 (51%), Gaps = 46/437 (10%)
Query: 38 DYTVLVFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMI-KNGFMPNSYTFVSLFGS 96
D +LVF + P C ++I A++ + V D+ + F+ M K+G P+ +TF ++ +
Sbjct: 214 DDAILVFVELPQPDAICWTSIISAFTRNDVYDKALGFFYSMCRKHGLSPDGFTFGTVLTA 273
Query: 97 CAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISW 156
C G +++G H + +G+ + V +SL++MYG
Sbjct: 274 CGNLGRLKQGKEVHAKVITSGLSGNVFVESSLVDMYG----------------------- 310
Query: 157 NSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFR 216
+ ++ + +FD M +N+VSW ++ GY ++G+ +++FRE G +
Sbjct: 311 --------KCRLVNQSQCVFDRMSVKNLVSWTALLGGYCQNGDFESVIRIFRE----GKK 358
Query: 217 GNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRV 276
+ + +VL AC A +G+ VH V+ +++ ++AL+DLY+KC ++ A R+
Sbjct: 359 VDTYSFGTVLRACAGLAAVRQGKEVHCQYVKRCCWRDVVTESALVDLYAKCGCIDFAYRI 418
Query: 277 FDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACV 336
F M+ RNL+ WN+MI G +G+ E +LF ++ I PD I+F+GV+ AC
Sbjct: 419 FVRMSVRNLITWNSMIYGFAQNGRGGEVFQLFDEMIE-----EGIRPDYISFVGVLFACS 473
Query: 337 RAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSF 396
A L+ +G+KYF M + Y+IKP HY CM +L A L EEAE ++ +N N
Sbjct: 474 HAGLVDQGKKYFAAMTEVYEIKPGIEHYNCMIDLLGRAGLLEEAENLI-----ENANCRD 528
Query: 397 ESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRE 456
E +W LL C A ER+AK V++ P Y +L NVY G+W+D ++R
Sbjct: 529 EPSLWTVLLGACAASPHSATAERIAKKAVELKPDHHLSYVYLANVYRAVGRWDDAVKIRN 588
Query: 457 LMKKRRMGRMPGCRLVD 473
LM KR +G+MPG ++
Sbjct: 589 LMTKRGVGKMPGTSWIE 605
Score = 125 bits (313), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 92/359 (25%), Positives = 159/359 (44%), Gaps = 61/359 (16%)
Query: 5 LQIQAHLITSGL----FFNNSFWTI------NLLKHSADFGSPDYTVLVFKCINNPGTFC 54
+Q +H I SGL F NS + NL + F Y L+
Sbjct: 80 IQFHSHAIKSGLDTDRFVGNSLLALYFKLGPNLFEARRVFDGLFYKDLI----------S 129
Query: 55 VNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLAL 114
++I Y P + + +L+M+ G PN +T ++ +C+ G + G HG+ +
Sbjct: 130 WTSMITGYVKVEKPKKSLELFLEMLGLGIEPNGFTLSAVIKACSGLGDLRLGKCFHGVVM 189
Query: 115 KNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHE 174
G D + +LI+MYG A+D A +FV++
Sbjct: 190 VRGFDLNDVISTALIDMYGRNSAVDDAILVFVEL-------------------------- 223
Query: 175 LFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREM-MKSGFRGNDKTMASVLTACGRSA 233
P+ + + W +IS ++++ +L F M K G + T +VLTACG
Sbjct: 224 -----PQPDAICWTSIISAFTRNDVYDKALGFFYSMCRKHGLSPDGFTFGTVLTACGNLG 278
Query: 234 RFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMIL 293
R +G+ VH + + L N+ ++++L+D+Y KC+ V +Q VFD M+ +NLV W A++
Sbjct: 279 RLKQGKEVHAKVITSGLSGNVFVESSLVDMYGKCRLVNQSQCVFDRMSVKNLVSWTALLG 338
Query: 294 GHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMI 352
G+C +G E I++F G + D +F V+ AC + +G++ Q +
Sbjct: 339 GYCQNGDFESVIRIFR-------EGKKV--DTYSFGTVLRACAGLAAVRQGKEVHCQYV 388
Score = 97.8 bits (242), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 83/346 (23%), Positives = 145/346 (41%), Gaps = 43/346 (12%)
Query: 88 YTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGA-MDCARNMFV 146
+ + SL +C K G H A+K+G+D + V NSL+ +Y G + AR +F
Sbjct: 61 FFYASLLQTCTKAVSFTHGIQFHSHAIKSGLDTDRFVGNSLLALYFKLGPNLFEARRVFD 120
Query: 147 QMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKL 206
+ +DLISW S+++G+V K P SL+L
Sbjct: 121 GLFYKDLISWTSMITGYV-------------------------------KVEKPKKSLEL 149
Query: 207 FREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSK 266
F EM+ G N T+++V+ AC G+ HG + N ++ TALID+Y +
Sbjct: 150 FLEMLGLGIEPNGFTLSAVIKACSGLGDLRLGKCFHGVVMVRGFDLNDVISTALIDMYGR 209
Query: 267 CQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEI 326
V+ A VF + + +CW ++I + ++ + F ++ +SPD
Sbjct: 210 NSAVDDAILVFVELPQPDAICWTSIISAFTRNDVYDKALGFFYSMCRKH----GLSPDGF 265
Query: 327 TFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRK 386
TF V+ AC L +G++ ++I + N + ++Y L +++ + +
Sbjct: 266 TFGTVLTACGNLGRLKQGKEVHAKVIT-SGLSGNVFVESSLVDMYGKCRLVNQSQCVFDR 324
Query: 387 MPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDF 432
M N + W +LL G V R+ + +D F
Sbjct: 325 MSVKN------LVSWTALLGGYCQNGDFESVIRIFREGKKVDTYSF 364
Score = 40.0 bits (92), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 41/198 (20%), Positives = 88/198 (44%), Gaps = 15/198 (7%)
Query: 27 LLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPN 86
L+ A G D+ +F ++ N++I ++ + + + +MI+ G P+
Sbjct: 402 LVDLYAKCGCIDFAYRIFVRMSVRNLITWNSMIYGFAQNGRGGEVFQLFDEMIEEGIRPD 461
Query: 87 SYTFVSLFGSCAKTGCVERG-----GMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCA 141
+FV + +C+ G V++G M +K G++ N +I++ G G ++ A
Sbjct: 462 YISFVGVLFACSHAGLVDQGKKYFAAMTEVYEIKPGIEH----YNCMIDLLGRAGLLEEA 517
Query: 142 RNMFVQMSPRDLISWNSIVSGHVRSGDMSA-----AHELFDIMPERNVVSWNIMISGYSK 196
N+ + RD S +++ G + SA A + ++ P+ + +S+ + + Y
Sbjct: 518 ENLIENANCRDEPSLWTVLLGACAASPHSATAERIAKKAVELKPDHH-LSYVYLANVYRA 576
Query: 197 SGNPGCSLKLFREMMKSG 214
G ++K+ M K G
Sbjct: 577 VGRWDDAVKIRNLMTKRG 594
>gi|224060371|ref|XP_002300166.1| predicted protein [Populus trichocarpa]
gi|222847424|gb|EEE84971.1| predicted protein [Populus trichocarpa]
Length = 719
Score = 241 bits (615), Expect = 8e-61, Method: Compositional matrix adjust.
Identities = 149/518 (28%), Positives = 246/518 (47%), Gaps = 47/518 (9%)
Query: 3 QLLQIQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAY 62
QL QI A +I L ++S T L+ S+ S ++++ VF F NA+I+
Sbjct: 96 QLHQIHAQIIIHNLS-SSSLITTQLISSSSLRKSINHSLAVFNHHKPKNLFTFNALIRGL 154
Query: 63 SNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFEL 122
+ + + + M+++G P+ T+ + S A E G H + L+ G++ +
Sbjct: 155 TTNSHFFNAIFHFRLMLRSGIKPDRLTYPFVLKSMAGLFSTELGMAIHCMILRCGIELDS 214
Query: 123 PVMNSLINMY----------------------------------GC--FGAMDCARNMFV 146
V SL++MY GC G+M A +F
Sbjct: 215 FVRVSLVDMYVKVEKLGSAFKVFDESPERFDSGSSALLWNVLIKGCCKAGSMKKAVKLFK 274
Query: 147 QMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKL 206
M ++ +SW++++ G ++GDM A ELFD MPE+NVVSW M+ G+S++G+ +L +
Sbjct: 275 AMPKKENVSWSTLIDGFAKNGDMDRAMELFDQMPEKNVVSWTTMVDGFSRNGDSEKALSM 334
Query: 207 FREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSK 266
F +M++ G R N T+ S L+AC + G +H Y L L TAL+D+Y+K
Sbjct: 335 FSKMLEEGVRPNAFTIVSALSACAKIGGLEAGLRIHKYIKDNGLHLTEALGTALVDMYAK 394
Query: 267 CQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEI 326
C +E A VF +++ W MI G IHG E+ I F ++ AG I PDE+
Sbjct: 395 CGNIESASEVFGETEQKSIRTWTVMIWGWAIHGHSEQAIACFKQMM---FAG--IKPDEV 449
Query: 327 TFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRK 386
F+ ++ AC+ + + G +F M Y I+P+ HY + ++ + +EA + +
Sbjct: 450 VFLALLTACMHSGQVDIGLNFFDSMRLDYCIEPSMKHYTLIVDMLGRSGQLKEALRFIER 509
Query: 387 MPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAG 446
MP + D ++W +L CR M + + ++P Y FL N YA G
Sbjct: 510 MPMNPD-----FVIWGALFCACRAHKKTKMAKFALNKLLKLEPTHTGNYIFLSNAYAALG 564
Query: 447 QWEDVARVRELMKKRRMGRMPGCRLVDLKEVVEKLKVG 484
QWED RVR LM+ R + + G ++++ V + G
Sbjct: 565 QWEDAERVRVLMQNRGVHKNSGWSCIEVEGQVHRFVSG 602
>gi|242047142|ref|XP_002461317.1| hypothetical protein SORBIDRAFT_02g000820 [Sorghum bicolor]
gi|241924694|gb|EER97838.1| hypothetical protein SORBIDRAFT_02g000820 [Sorghum bicolor]
Length = 640
Score = 241 bits (614), Expect = 8e-61, Method: Compositional matrix adjust.
Identities = 144/461 (31%), Positives = 240/461 (52%), Gaps = 20/461 (4%)
Query: 27 LLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMI-KNGFMP 85
L + A G D V + + +P + I A+S+ + + +M+ +G +P
Sbjct: 68 LQRAYAASGRLDLAVALLRRTPDPTAVFYTSAIHAHSSRGLHHAALALLSEMLLSHGLLP 127
Query: 86 NSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMF 145
++T + +C G + G HG A+K + E V +L+ MY G AR +F
Sbjct: 128 TAHTLSASLPAC---GGLAVGRALHGYAVKLALSGEPYVATALLGMYARAGDAAAARVLF 184
Query: 146 VQMSPR-DLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSL 204
M P ++S ++++ + + G + A LFD +P ++++ WN M+ GY++ G P +L
Sbjct: 185 DGMQPDPHVVSVTAMLTCYAKMGLLDDARSLFDGLPSKDLICWNAMMDGYTQHGRPSEAL 244
Query: 205 KLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTS---LKPNIILDTALI 261
+LFR M++SG ++ ++ L+A + GR +H + +S ++ N + TALI
Sbjct: 245 RLFRRMLRSGVEPDEVSVVLALSAVAQLGTAESGRWLHSFVTNSSSRRVRLNARVGTALI 304
Query: 262 DLYSKCQKVEVAQRVFDSMA--DRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGG 319
D+Y KC +E A VF + DR++V WNAM+ G+ +HG E + F G +
Sbjct: 305 DMYYKCGSLEDAVAVFGDLGAGDRDIVAWNAMVNGYAMHGHSREALAAF-----GQLRAQ 359
Query: 320 SISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEE 379
+ P +ITFIGV+ AC + L+ EGR+ FR M + Y I+P HY CM +L A EE
Sbjct: 360 GLWPTDITFIGVLNACSHSGLVDEGRELFRSMAEEYGIEPKVEHYGCMVDLLGRAGRVEE 419
Query: 380 AEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLL 439
A E+++ M + ++MW SLL+ CR + + +R+A V + Y L
Sbjct: 420 AFELVQSMTRTKPD----AVMWASLLAACRLHKNMELGQRIADHLVANGLANSGTYVLLS 475
Query: 440 NVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDL-KEVVE 479
N+YA AG W +V RVR +M+ + + PGC V++ + VVE
Sbjct: 476 NMYAAAGNWREVGRVRAMMRASGIQKEPGCSAVEVGRRVVE 516
>gi|222637368|gb|EEE67500.1| hypothetical protein OsJ_24934 [Oryza sativa Japonica Group]
Length = 830
Score = 241 bits (614), Expect = 8e-61, Method: Compositional matrix adjust.
Identities = 146/469 (31%), Positives = 232/469 (49%), Gaps = 19/469 (4%)
Query: 43 VFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGC 102
VF+ ++ NA+I Y S + + +M+ + +TF S+ +CA G
Sbjct: 254 VFEEVDGKFDVVWNAMISGYVQSGMCADAFELFRRMVSEKVPLDEFTFTSVLSACANAGF 313
Query: 103 VERGGMCHGLALKNGVDF----ELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNS 158
G HG ++ +F LPV N+L+ +Y G + A+ +F M+ +D++SWN+
Sbjct: 314 FVHGKSVHGQIIRLQPNFVPEAALPVNNALVTLYSKGGKIVIAKRIFDTMNLKDVVSWNT 373
Query: 159 IVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGN 218
I+SG++ SG + A E+F +MP +N +SW +M+SGY G +LKLF +M +
Sbjct: 374 ILSGYIDSGCLDKAVEVFKVMPYKNDLSWMVMVSGYVHGGLSEDALKLFNQMRAEDVKPC 433
Query: 219 DKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFD 278
D T A + ACG GR +H + V+ + + AL+ +Y+KC V A+ VF
Sbjct: 434 DYTYAGAIAACGELGALKHGRQLHAHLVQCGFEASNSAGNALLTMYAKCGAVNDARLVFL 493
Query: 279 SMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRA 338
M + + V WNAMI HG E ++LF +V I PD I+F+ ++ AC A
Sbjct: 494 VMPNLDSVSWNAMISALGQHGHGREALELFDQMV-----AEGIDPDRISFLTILTACNHA 548
Query: 339 ELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFES 398
L+ EG YF M + I P HY + +L + EA ++++ MP FE
Sbjct: 549 GLVDEGFHYFESMKRDFGISPGEDHYARLIDLLGRSGRIGEARDLIKTMP-------FEP 601
Query: 399 I--MWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRE 456
+W ++LS CR G + A M PQ Y L N Y+ AG+W D ARVR+
Sbjct: 602 TPSIWEAILSGCRTNGDMEFGAYAADQLFRMIPQHDGTYILLSNTYSAAGRWVDAARVRK 661
Query: 457 LMKKRRMGRMPGCRLVDLKEVVEKLKVGHFWRGGMKEEVNKMMECRQSR 505
LM+ R + + PGC +++ + VG + +EV + +E +R
Sbjct: 662 LMRDRGVKKEPGCSWIEVGSKIHVFLVGD-TKHPEAQEVYQFLEVIGAR 709
Score = 153 bits (387), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 131/480 (27%), Positives = 223/480 (46%), Gaps = 81/480 (16%)
Query: 52 TFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFM-PNSYTFVSLFGSC------AKTGCVE 104
T NA++ A++ + + V + ++ +G + P+ Y+F +L + A C +
Sbjct: 125 TVLHNAMMSAFARASLAAPAVSVFHALLGSGSLRPDDYSFTALISAVGQMHNLAAPHCTQ 184
Query: 105 RGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDC--------ARNMFVQMSPRDLISW 156
H LK+G L V N+LI +Y M C AR + +M +D ++W
Sbjct: 185 ----LHCSVLKSGAAAVLSVSNALIALY-----MKCDTPEASWDARKVLDEMPDKDDLTW 235
Query: 157 NSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFR 216
++V G+VR GD++AA +F+ + + V WN MISGY +SG + +LFR M+
Sbjct: 236 TTMVVGYVRRGDVNAARSVFEEVDGKFDVVWNAMISGYVQSGMCADAFELFRRMVSEKVP 295
Query: 217 GNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNII------LDTALIDLYSKCQKV 270
++ T SVL+AC + F G+SVHG +R L+PN + ++ AL+ LYSK K+
Sbjct: 296 LDEFTFTSVLSACANAGFFVHGKSVHGQIIR--LQPNFVPEAALPVNNALVTLYSKGGKI 353
Query: 271 EVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFT-----------ALVNGTVAGG 319
+A+R+FD+M +++V WN ++ G+ G ++ +++F +V+G V GG
Sbjct: 354 VIAKRIFDTMNLKDVVSWNTILSGYIDSGCLDKAVEVFKVMPYKNDLSWMVMVSGYVHGG 413
Query: 320 ---------------SISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHY 364
+ P + T+ G I AC L GR+ ++ N A
Sbjct: 414 LSEDALKLFNQMRAEDVKPCDYTYAGAIAACGELGALKHGRQLHAHLVQCGFEASNSAGN 473
Query: 365 WCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQG----AVAMVERL 420
+ +YA +A + MP + +S+ W +++S G A+ + +++
Sbjct: 474 -ALLTMYAKCGAVNDARLVFLVMP------NLDSVSWNAMISALGQHGHGREALELFDQM 526
Query: 421 AKSFVDMDPQDFSRYQFLLNVYAV--AGQWEDVARVRELMKKRRMGRMPG----CRLVDL 474
+D D R FL + A AG ++ E M KR G PG RL+DL
Sbjct: 527 VAEGIDPD-----RISFLTILTACNHAGLVDEGFHYFESM-KRDFGISPGEDHYARLIDL 580
Score = 75.1 bits (183), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 55/223 (24%), Positives = 96/223 (43%), Gaps = 9/223 (4%)
Query: 26 NLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMP 85
+L D G D V VFK + ++ Y + + + + + QM P
Sbjct: 373 TILSGYIDSGCLDKAVEVFKVMPYKNDLSWMVMVSGYVHGGLSEDALKLFNQMRAEDVKP 432
Query: 86 NSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMF 145
YT+ +C + G ++ G H ++ G + N+L+ MY GA++ AR +F
Sbjct: 433 CDYTYAGAIAACGELGALKHGRQLHAHLVQCGFEASNSAGNALLTMYAKCGAVNDARLVF 492
Query: 146 VQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIM------PERNVVSWNIMISGYSKSGN 199
+ M D +SWN+++S + G A ELFD M P+R +S+ +++ + +G
Sbjct: 493 LVMPNLDSVSWNAMISALGQHGHGREALELFDQMVAEGIDPDR--ISFLTILTACNHAGL 550
Query: 200 PGCSLKLFREMMKS-GFRGNDKTMASVLTACGRSARFNEGRSV 241
F M + G + A ++ GRS R E R +
Sbjct: 551 VDEGFHYFESMKRDFGISPGEDHYARLIDLLGRSGRIGEARDL 593
>gi|357116509|ref|XP_003560023.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g25360-like [Brachypodium distachyon]
Length = 804
Score = 241 bits (614), Expect = 8e-61, Method: Compositional matrix adjust.
Identities = 139/435 (31%), Positives = 220/435 (50%), Gaps = 18/435 (4%)
Query: 56 NAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALK 115
NA+I Y S + + + +M+ P+ +TF SL +CA G G HG ++
Sbjct: 265 NAMISGYVQSGMCAEAFELFRRMVSKRIPPDEFTFTSLLSACANAGFFLHGKSVHGQFIR 324
Query: 116 NGVDF----ELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSA 171
DF LPV N+L+ +Y G + A +F M+ +D++SWN+I+SG++ SG +
Sbjct: 325 LQPDFVPEAALPVNNALVTLYSKSGKIAVATKIFDSMTLKDVVSWNTILSGYIESGCLDN 384
Query: 172 AHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGR 231
A +F MP ++ +SW +M+SGY G +LKLF +M + D T A + ACG
Sbjct: 385 AARIFKEMPYKSELSWMVMVSGYVHGGLAEDALKLFNQMRSEDVKPCDYTYAGAVAACGE 444
Query: 232 SARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAM 291
G+ +H + V+ + + AL+ +Y++C V+ A+ VF M + + V WNAM
Sbjct: 445 LGALKHGKQLHAHLVQCGFEASNSAGNALLTMYARCGAVKDARLVFLVMPNVDSVSWNAM 504
Query: 292 ILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQM 351
I HG E ++LF +V I PD I+F+ ++ AC A L+ +G +YF M
Sbjct: 505 ISALGQHGHGREALELFDQMV-----AQGIYPDRISFLTILTACNHAGLVDDGFQYFESM 559
Query: 352 IDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESI--MWVSLLSLCR 409
+ I P HY + +L A EA ++++ MP FE +W ++LS CR
Sbjct: 560 ERDFGISPGEDHYARLIDLLGRAGRIGEARDLIKTMP-------FEPTPAIWEAILSGCR 612
Query: 410 FQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGC 469
G + + A M P+ Y L N Y+ AG+W D ARVR+LM+ R + + PGC
Sbjct: 613 INGDMELGAYAADQLFKMVPEHDGTYILLSNTYSAAGRWVDAARVRKLMRDRGVKKEPGC 672
Query: 470 RLVDLKEVVEKLKVG 484
+++ V VG
Sbjct: 673 SWIEVGNKVHVFLVG 687
Score = 147 bits (370), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 127/472 (26%), Positives = 212/472 (44%), Gaps = 64/472 (13%)
Query: 52 TFCVNAVIKAYSNSCVPDQGVVFYLQMI--KNGFMPNSYTFVSLFGSCAKTG--CVERGG 107
T NA+I A++ + + V + ++ + P+ Y+F SL + + V
Sbjct: 122 TVLHNAMISAFARASLAAPAVSVFRSLLASDDSLRPDDYSFTSLLSAVGQMHDLAVSHCT 181
Query: 108 MCHGLALKNGVDFELPVMNSLINMY---GCFGAMDCARNMFVQMSPRDLISWNSIVSGHV 164
H K G L V N+LI +Y G AR + +M +D ++W +IV GHV
Sbjct: 182 QLHCAVHKLGAGAVLSVSNALIALYMKCDAPGVTRDARKVLDEMPEKDELTWTTIVVGHV 241
Query: 165 RSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMAS 224
R GD+ AA F+ + V WN MISGY +SG + +LFR M+ ++ T S
Sbjct: 242 RKGDVHAARSAFEEIDGEFDVVWNAMISGYVQSGMCAEAFELFRRMVSKRIPPDEFTFTS 301
Query: 225 VLTACGRSARFNEGRSVHGYTVRTSLKPNII------LDTALIDLYSKCQKVEVAQRVFD 278
+L+AC + F G+SVHG +R L+P+ + ++ AL+ LYSK K+ VA ++FD
Sbjct: 302 LLSACANAGFFLHGKSVHGQFIR--LQPDFVPEAALPVNNALVTLYSKSGKIAVATKIFD 359
Query: 279 SMADRNLVCWNAMILGHCIHGKPEEGIKLFT-----------ALVNGTVAGG-------- 319
SM +++V WN ++ G+ G + ++F +V+G V GG
Sbjct: 360 SMTLKDVVSWNTILSGYIESGCLDNAARIFKEMPYKSELSWMVMVSGYVHGGLAEDALKL 419
Query: 320 -------SISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYA 372
+ P + T+ G + AC L G++ ++ N A + +YA
Sbjct: 420 FNQMRSEDVKPCDYTYAGAVAACGELGALKHGKQLHAHLVQCGFEASNSAGN-ALLTMYA 478
Query: 373 GAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQG----AVAMVERLAKSFVDMD 428
++A + MP + +S+ W +++S G A+ + +++ + D
Sbjct: 479 RCGAVKDARLVFLVMP------NVDSVSWNAMISALGQHGHGREALELFDQMVAQGIYPD 532
Query: 429 PQDFSRYQFLLNVYAV--AGQWEDVARVRELMKKRRMGRMPG----CRLVDL 474
R FL + A AG +D + E M +R G PG RL+DL
Sbjct: 533 -----RISFLTILTACNHAGLVDDGFQYFESM-ERDFGISPGEDHYARLIDL 578
Score = 78.6 bits (192), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 77/348 (22%), Positives = 144/348 (41%), Gaps = 55/348 (15%)
Query: 154 ISWNSIVSGHVRSGDMSAAHELFDIMP--ERNVVSWNIMISGYSKSGNPGCSLKLFREMM 211
++ S+VS + +G + + FD +P R+ V N MIS ++++ ++ +FR ++
Sbjct: 90 VAATSLVSAYAVAGRLRDSAAFFDSVPVARRDTVLHNAMISAFARASLAAPAVSVFRSLL 149
Query: 212 KS--GFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDT--ALIDLYSKC 267
S R +D + S+L+A G+ + L +L ALI LY KC
Sbjct: 150 ASDDSLRPDDYSFTSLLSAVGQMHDLAVSHCTQLHCAVHKLGAGAVLSVSNALIALYMKC 209
Query: 268 QKVEV---AQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLF-----------TALVN 313
V A++V D M +++ + W +++GH G F A+++
Sbjct: 210 DAPGVTRDARKVLDEMPEKDELTWTTIVVGHVRKGDVHAARSAFEEIDGEFDVVWNAMIS 269
Query: 314 GTVAGG---------------SISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIK 358
G V G I PDE TF ++ AC A G+ Q F +++
Sbjct: 270 GYVQSGMCAEAFELFRRMVSKRIPPDEFTFTSLLSACANAGFFLHGKSVHGQ---FIRLQ 326
Query: 359 PNFAHYW------CMANLYAGAELTEEAEEILRKMPEDNDNMSFESIM-WVSLLSLCRFQ 411
P+F + LY+ + A +I D+M+ + ++ W ++LS
Sbjct: 327 PDFVPEAALPVNNALVTLYSKSGKIAVATKIF-------DSMTLKDVVSWNTILSGYIES 379
Query: 412 GAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMK 459
G ++ A+ F +M + + +++ Y G ED ++ M+
Sbjct: 380 GC---LDNAARIFKEMPYKSELSWMVMVSGYVHGGLAEDALKLFNQMR 424
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 57/209 (27%), Positives = 95/209 (45%), Gaps = 18/209 (8%)
Query: 1 MKQLLQIQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIK 60
+K Q+ AHL+ G +NS LL A G+ LVF + N + NA+I
Sbjct: 448 LKHGKQLHAHLVQCGFEASNSAGNA-LLTMYARCGAVKDARLVFLVMPNVDSVSWNAMIS 506
Query: 61 AYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERG-----GMCHGLALK 115
A + + + QM+ G P+ +F+++ +C G V+ G M +
Sbjct: 507 ALGQHGHGREALELFDQMVAQGIYPDRISFLTILTACNHAGLVDDGFQYFESMERDFGIS 566
Query: 116 NGVDFELPVMNSLINMYGCFGAMDCARNMFVQM--SPRDLISWNSIVSGHVRSGDMS--- 170
G D LI++ G G + AR++ M P I W +I+SG +GDM
Sbjct: 567 PGEDH----YARLIDLLGRAGRIGEARDLIKTMPFEPTPAI-WEAILSGCRINGDMELGA 621
Query: 171 -AAHELFDIMPERNVVSWNIMISGYSKSG 198
AA +LF ++PE + ++ ++ + YS +G
Sbjct: 622 YAADQLFKMVPEHD-GTYILLSNTYSAAG 649
>gi|359482518|ref|XP_002279880.2| PREDICTED: uncharacterized protein LOC100266920 [Vitis vinifera]
Length = 1753
Score = 241 bits (614), Expect = 8e-61, Method: Compositional matrix adjust.
Identities = 127/405 (31%), Positives = 222/405 (54%), Gaps = 19/405 (4%)
Query: 104 ERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGH 163
+ G + HG +K G + L V NSLI +YG G ++ AR +F+++ ++++SWN+++S +
Sbjct: 1126 DEGKVIHGYVVKGGFENYLFVKNSLICLYGKHGNVNAARILFLEIKTKNIVSWNALISSY 1185
Query: 164 VRSGDMSAAHELF------DIMP--ERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGF 215
G A +F D P NVVSW+ +I G++ G +L+LFR M +
Sbjct: 1186 ADLGWCDEAFAIFLQLEKTDEYPMVRPNVVSWSAVIGGFASKGQGEEALELFRRMQLAKV 1245
Query: 216 RGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQR 275
+ N T+ASVL+ C A + GR +HG+ VR+ + NI++ LI++Y+K +
Sbjct: 1246 KANSVTIASVLSVCAELAALHLGREIHGHVVRSLMDGNILVGNGLINMYTKSGSFKEGNL 1305
Query: 276 VFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICAC 335
VF+ + +++L+ WN M+ G+ IHG E I+ F ++ PD +TF+ V+ AC
Sbjct: 1306 VFEKIENKDLISWNTMVAGYGIHGLGENAIRTFDQMIK-----DGFEPDGVTFVAVLSAC 1360
Query: 336 VRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMS 395
A L+ EGR+ F +MI ++++P HY CM +L A L +EA ++++ MP + +
Sbjct: 1361 SHAGLVAEGRELFDKMIKEFRVEPQMEHYACMVDLLGRAGLLQEASKVVKSMPVEPN--- 1417
Query: 396 FESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVR 455
+ +W +LL+ CR + E A +++ + Y L N+YA +G+WED A+VR
Sbjct: 1418 --ACVWGALLNSCRMHKNTEVAEETASQIFNLNSEIAGSYMLLSNIYAASGRWEDSAKVR 1475
Query: 456 ELMKKRRMGRMPGCRLVDLKEVVEKLKVGHFWRGGMKEEVNKMME 500
K + + + PG + +K+ V G+ + EEV ++++
Sbjct: 1476 ISAKTKGLKKTPGQSWIQVKKKVYMFSAGNTQHAEL-EEVYRILK 1519
Score = 137 bits (346), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 102/364 (28%), Positives = 176/364 (48%), Gaps = 14/364 (3%)
Query: 6 QIQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFK-----CINNPGTFCVNAVIK 60
QI + +I +G ++F ++ A FG VF+ C +N N++++
Sbjct: 890 QIHSQIIVTG-SHRSAFLAARVVSVYAGFGLVSDAQRVFEVSPIECFSN--LLLWNSILR 946
Query: 61 AYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDF 120
A ++ + Y +M K G + +TF + +CA G + HG ++ G +
Sbjct: 947 ANVAHGYCEEALEIYCRMRKLGVSADGFTFPLVIRACALMGSRKLCRSVHGHVVEMGFQW 1006
Query: 121 ELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMP 180
L V N L+ MYG G MD AR +F +M+ R +SWN++VSG+ + D A E+F +M
Sbjct: 1007 NLHVGNELMGMYGKIGRMDDARKVFERMAVRSCVSWNTMVSGYALNYDCHGASEMFRMMG 1066
Query: 181 ----ERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFN 236
E N+V+W ++S +++ G +++LF M G + +A VL+ A F+
Sbjct: 1067 SAGLEPNLVTWTSLLSSHARCGQHVETMELFGRMRMRGIGATAEALAVVLSVSVDLAAFD 1126
Query: 237 EGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHC 296
EG+ +HGY V+ + + + +LI LY K V A+ +F + +N+V WNA+I +
Sbjct: 1127 EGKVIHGYVVKGGFENYLFVKNSLICLYGKHGNVNAARILFLEIKTKNIVSWNALISSYA 1186
Query: 297 IHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYK 356
G +E +F L T + P+ +++ VI E + FR+M K
Sbjct: 1187 DLGWCDEAFAIFLQL-EKTDEYPMVRPNVVSWSAVIGGFASKGQGEEALELFRRM-QLAK 1244
Query: 357 IKPN 360
+K N
Sbjct: 1245 VKAN 1248
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 65/286 (22%), Positives = 118/286 (41%), Gaps = 41/286 (14%)
Query: 27 LLKHSADFGSPDYTVLVFKCINN--------PGTFCVNAVIKAYSNSCVPDQGVVFYLQM 78
L+ AD G D +F + P +AVI +++ ++ + + +M
Sbjct: 1181 LISSYADLGWCDEAFAIFLQLEKTDEYPMVRPNVVSWSAVIGGFASKGQGEEALELFRRM 1240
Query: 79 IKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAM 138
NS T S+ CA+ + G HG +++ +D + V N LINMY G+
Sbjct: 1241 QLAKVKANSVTIASVLSVCAELAALHLGREIHGHVVRSLMDGNILVGNGLINMYTKSGSF 1300
Query: 139 DCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSG 198
+F ++ +DLISWN+ M++GY G
Sbjct: 1301 KEGNLVFEKIENKDLISWNT-------------------------------MVAGYGIHG 1329
Query: 199 NPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRT-SLKPNIILD 257
+++ F +M+K GF + T +VL+AC + EGR + ++ ++P +
Sbjct: 1330 LGENAIRTFDQMIKDGFEPDGVTFVAVLSACSHAGLVAEGRELFDKMIKEFRVEPQMEHY 1389
Query: 258 TALIDLYSKCQKVEVAQRVFDSM-ADRNLVCWNAMILGHCIHGKPE 302
++DL + ++ A +V SM + N W A++ +H E
Sbjct: 1390 ACMVDLLGRAGLLQEASKVVKSMPVEPNACVWGALLNSCRMHKNTE 1435
>gi|356544545|ref|XP_003540710.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g13600-like [Glycine max]
Length = 705
Score = 241 bits (614), Expect = 9e-61, Method: Compositional matrix adjust.
Identities = 136/436 (31%), Positives = 236/436 (54%), Gaps = 19/436 (4%)
Query: 56 NAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALK 115
N++I Y + + + ++ M+ NG P+ T S+ +CA + G H +K
Sbjct: 221 NSLITCYEQNGPAGKALEVFVMMMDNGVEPDEITLASVVSACASWSAIREGLQIHARVVK 280
Query: 116 -NGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHE 174
+ +L + N+L++MY ++ AR +F +M R+++S S+V G+ R+ + AA
Sbjct: 281 RDKYRNDLVLGNALVDMYAKCRRVNEARLVFDRMPLRNVVSETSMVCGYARAASVKAARL 340
Query: 175 LFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSAR 234
+F M E+NVVSWN +I+GY+++G +++LF + + T ++L AC A
Sbjct: 341 MFSNMMEKNVVSWNALIAGYTQNGENEEAVRLFLLLKRESIWPTHYTFGNLLNACANLAD 400
Query: 235 FNEGRSVH------GYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCW 288
GR H G+ ++ + +I + +LID+Y KC VE VF+ M +R++V W
Sbjct: 401 LKLGRQAHTQILKHGFWFQSGEESDIFVGNSLIDMYMKCGMVEDGCLVFERMVERDVVSW 460
Query: 289 NAMILGHCIHGKPEEGIKLFTA-LVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKY 347
NAMI+G+ +G +++F LV+G PD +T IGV+ AC A L+ EGR+Y
Sbjct: 461 NAMIVGYAQNGYGTNALEIFRKMLVSGQ------KPDHVTMIGVLSACSHAGLVEEGRRY 514
Query: 348 FRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSL 407
F M + P H+ CM +L A +EA ++++ MP DN ++W SLL+
Sbjct: 515 FHSMRTELGLAPMKDHFTCMVDLLGRAGCLDEANDLIQTMPMQPDN-----VVWGSLLAA 569
Query: 408 CRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMP 467
C+ G + + + +A+ +++DP + Y L N+YA G+W+DV RVR+ M++R + + P
Sbjct: 570 CKVHGNIELGKYVAEKLMEIDPLNSGPYVLLSNMYAELGRWKDVVRVRKQMRQRGVIKQP 629
Query: 468 GCRLVDLKEVVEKLKV 483
GC ++++ V V
Sbjct: 630 GCSWIEIQSRVHVFMV 645
Score = 157 bits (396), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 101/375 (26%), Positives = 177/375 (47%), Gaps = 14/375 (3%)
Query: 86 NSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMF 145
+S F L SC ++ H +K E+ + N L++ YG G + AR +F
Sbjct: 18 DSSPFAKLLDSCVRSKSGIDARRIHARIIKTQFSSEIFIQNRLVDAYGKCGYFEDARKVF 77
Query: 146 VQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLK 205
+M R+ S+N+++S + G + A +F MPE + SWN M+SG+++ +L+
Sbjct: 78 DRMPQRNTFSYNAVLSVLTKFGKLDEAFNVFKSMPEPDQCSWNAMVSGFAQHDRFEEALR 137
Query: 206 LFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYS 265
F +M F N+ + S L+AC N G +H ++ ++ + +AL+D+YS
Sbjct: 138 FFVDMHSEDFVLNEYSFGSALSACAGLTDLNMGIQIHALISKSRYLLDVYMGSALVDMYS 197
Query: 266 KCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDE 325
KC V AQR FD MA RN+V WN++I + +G + +++F +++ V PDE
Sbjct: 198 KCGVVACAQRAFDGMAVRNIVSWNSLITCYEQNGPAGKALEVFVMMMDNGV-----EPDE 252
Query: 326 ITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILR 385
IT V+ AC + EG + +++ K + + + ++YA EA +
Sbjct: 253 ITLASVVSACASWSAIREGLQIHARVVKRDKYRNDLVLGNALVDMYAKCRRVNEARLVFD 312
Query: 386 KMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVA 445
+MP N VS S+ A V+ F +M ++ + L+ Y
Sbjct: 313 RMPLRN---------VVSETSMVCGYARAASVKAARLMFSNMMEKNVVSWNALIAGYTQN 363
Query: 446 GQWEDVARVRELMKK 460
G+ E+ R+ L+K+
Sbjct: 364 GENEEAVRLFLLLKR 378
Score = 135 bits (339), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 95/365 (26%), Positives = 165/365 (45%), Gaps = 68/365 (18%)
Query: 20 NSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMI 79
N+F +L FG D VFK + P NA++ ++ ++ + F++ M
Sbjct: 84 NTFSYNAVLSVLTKFGKLDEAFNVFKSMPEPDQCSWNAMVSGFAQHDRFEEALRFFVDMH 143
Query: 80 KNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMD 139
F+ N Y+F S +CA + G H L K+ ++ + ++L++MY G +
Sbjct: 144 SEDFVLNEYSFGSALSACAGLTDLNMGIQIHALISKSRYLLDVYMGSALVDMYSKCGVVA 203
Query: 140 CARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGN 199
CA+ F M+ R+++SWNS+ I+ Y ++G
Sbjct: 204 CAQRAFDGMAVRNIVSWNSL-------------------------------ITCYEQNGP 232
Query: 200 PGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTV-RTSLKPNIILDT 258
G +L++F MM +G ++ T+ASV++AC + EG +H V R + +++L
Sbjct: 233 AGKALEVFVMMMDNGVEPDEITLASVVSACASWSAIREGLQIHARVVKRDKYRNDLVLGN 292
Query: 259 ALIDLYSKCQKVEVAQRVFD-------------------------------SMADRNLVC 287
AL+D+Y+KC++V A+ VFD +M ++N+V
Sbjct: 293 ALVDMYAKCRRVNEARLVFDRMPLRNVVSETSMVCGYARAASVKAARLMFSNMMEKNVVS 352
Query: 288 WNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKY 347
WNA+I G+ +G+ EE ++LF L SI P TF ++ AC L GR+
Sbjct: 353 WNALIAGYTQNGENEEAVRLFLLLKR-----ESIWPTHYTFGNLLNACANLADLKLGRQA 407
Query: 348 FRQMI 352
Q++
Sbjct: 408 HTQIL 412
Score = 88.2 bits (217), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 74/306 (24%), Positives = 136/306 (44%), Gaps = 41/306 (13%)
Query: 8 QAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSNSCV 67
+A L+ + N +++ A S L+F + NA+I Y+ +
Sbjct: 306 EARLVFDRMPLRNVVSETSMVCGYARAASVKAARLMFSNMMEKNVVSWNALIAGYTQNGE 365
Query: 68 PDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFE------ 121
++ V +L + + P YTF +L +CA ++ G H LK+G F+
Sbjct: 366 NEEAVRLFLLLKRESIWPTHYTFGNLLNACANLADLKLGRQAHTQILKHGFWFQSGEESD 425
Query: 122 LPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPE 181
+ V NSLI+MY G ++ +F +M RD++SWN+++ G
Sbjct: 426 IFVGNSLIDMYMKCGMVEDGCLVFERMVERDVVSWNAMIVG------------------- 466
Query: 182 RNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSV 241
Y+++G +L++FR+M+ SG + + TM VL+AC + EGR
Sbjct: 467 ------------YAQNGYGTNALEIFRKMLVSGQKPDHVTMIGVLSACSHAGLVEEGRR- 513
Query: 242 HGYTVRTSLKPNIILD--TALIDLYSKCQKVEVAQRVFDSMA-DRNLVCWNAMILGHCIH 298
+ +++RT L + D T ++DL + ++ A + +M + V W +++ +H
Sbjct: 514 YFHSMRTELGLAPMKDHFTCMVDLLGRAGCLDEANDLIQTMPMQPDNVVWGSLLAACKVH 573
Query: 299 GKPEEG 304
G E G
Sbjct: 574 GNIELG 579
Score = 39.7 bits (91), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 36/179 (20%), Positives = 82/179 (45%), Gaps = 7/179 (3%)
Query: 42 LVFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTG 101
LVF+ + NA+I Y+ + + + +M+ +G P+ T + + +C+ G
Sbjct: 447 LVFERMVERDVVSWNAMIVGYAQNGYGTNALEIFRKMLVSGQKPDHVTMIGVLSACSHAG 506
Query: 102 CVERG-GMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPR-DLISWNSI 159
VE G H + + G+ ++++ G G +D A ++ M + D + W S+
Sbjct: 507 LVEEGRRYFHSMRTELGLAPMKDHFTCMVDLLGRAGCLDEANDLIQTMPMQPDNVVWGSL 566
Query: 160 VSGHVRSGDMS----AAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSG 214
++ G++ A +L +I P N + ++ + Y++ G +++ ++M + G
Sbjct: 567 LAACKVHGNIELGKYVAEKLMEIDP-LNSGPYVLLSNMYAELGRWKDVVRVRKQMRQRG 624
>gi|357453191|ref|XP_003596872.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|87240903|gb|ABD32761.1| Tetratricopeptide-like helical [Medicago truncatula]
gi|355485920|gb|AES67123.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 517
Score = 241 bits (614), Expect = 9e-61, Method: Compositional matrix adjust.
Identities = 128/414 (30%), Positives = 231/414 (55%), Gaps = 14/414 (3%)
Query: 75 YLQMIKNGFMPNSYTFVSLFGSCAKT---GCVERGGMCHGLALKNGVDF-ELPVMNSLIN 130
++QM++ PN T ++L +CA + + G H A K+G ++ V +LI+
Sbjct: 75 FIQMLEAEVEPNHITLITLLSACAHSPSKTSITFGAALHTHAFKHGFAMNDVMVGTALID 134
Query: 131 MYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIM 190
MY G +D AR +F QM R+L+SWN+++ G++++GD+ A +LFD +P +NVVSW ++
Sbjct: 135 MYAKCGKLDYARLVFDQMGVRNLVSWNTMIDGYMKNGDVDDALKLFDKLPVKNVVSWTVV 194
Query: 191 ISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSL 250
I G+ K +L+ FREM +G + T+ ++++AC G VH ++
Sbjct: 195 IGGFVKKECYEEALECFREMQLAGVVPDFVTVIAIISACANLGALGLGLWVHRLVMKKEF 254
Query: 251 KPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTA 310
+ N+ + +LID+Y++C +E+A++VFD M+ RNLV WN++I+G ++G ++ + F +
Sbjct: 255 RDNVKVLNSLIDMYARCGCIELARQVFDGMSQRNLVSWNSIIVGFAVNGLADKALSFFRS 314
Query: 311 LVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANL 370
+ + P+ +++ + AC A L+ EG K F + ++ P HY C+ +L
Sbjct: 315 M-----KKEGLEPNGVSYTSALTACSHAGLIDEGLKIFADIKRDHRNSPRIEHYGCLVDL 369
Query: 371 YAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQ 430
Y+ A +EA ++++KMP M ++ SLL+ CR QG V + E++ K V++ P
Sbjct: 370 YSRAGRLKEAWDVIKKMP-----MMPNEVVLGSLLAACRTQGDVELAEKVMKYQVELYPG 424
Query: 431 DFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLKEVVEKLKVG 484
S Y N+YA G+W+ ++VR MK+R + + +++ + K G
Sbjct: 425 GDSNYVLFSNIYAAVGKWDGASKVRREMKERGLQKNLAFSSIEIDSGIHKFVSG 478
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 96/427 (22%), Positives = 151/427 (35%), Gaps = 106/427 (24%)
Query: 7 IQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAY-SNS 65
+ H G N+ L+ A G DY LVF + N +I Y N
Sbjct: 112 LHTHAFKHGFAMNDVMVGTALIDMYAKCGKLDYARLVFDQMGVRNLVSWNTMIDGYMKNG 171
Query: 66 CVPDQGVVFYLQMIKN------------------------------GFMPNSYTFVSLFG 95
V D +F +KN G +P+ T +++
Sbjct: 172 DVDDALKLFDKLPVKNVVSWTVVIGGFVKKECYEEALECFREMQLAGVVPDFVTVIAIIS 231
Query: 96 SCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLIS 155
+CA G + G H L +K + V+NSLI+MY G ++ AR +F MS R+L+S
Sbjct: 232 ACANLGALGLGLWVHRLVMKKEFRDNVKVLNSLIDMYARCGCIELARQVFDGMSQRNLVS 291
Query: 156 WNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGF 215
WNSI I G++ +G +L FR M K G
Sbjct: 292 WNSI-------------------------------IVGFAVNGLADKALSFFRSMKKEGL 320
Query: 216 RGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSL-KPNIILDTALIDLYSKCQKVEVAQ 274
N + S LTAC + +EG + R P I L+DLYS+ +++ A
Sbjct: 321 EPNGVSYTSALTACSHAGLIDEGLKIFADIKRDHRNSPRIEHYGCLVDLYSRAGRLKEAW 380
Query: 275 RVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICA 334
V M + P+E+ ++ A
Sbjct: 381 DVIKKMP---------------------------------------MMPNEVVLGSLLAA 401
Query: 335 CVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPED--ND 392
C + K + ++ Y ++Y +N+YA + A ++ R+M E
Sbjct: 402 CRTQGDVELAEKVMKYQVELY--PGGDSNYVLFSNIYAAVGKWDGASKVRREMKERGLQK 459
Query: 393 NMSFESI 399
N++F SI
Sbjct: 460 NLAFSSI 466
>gi|357502643|ref|XP_003621610.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355496625|gb|AES77828.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 881
Score = 241 bits (614), Expect = 9e-61, Method: Compositional matrix adjust.
Identities = 138/480 (28%), Positives = 236/480 (49%), Gaps = 42/480 (8%)
Query: 5 LQIQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSN 64
+Q+ + GL FN +L A G+ L+F + NA+I A+
Sbjct: 392 IQLHGLAVKCGLDFNICVAN-TILDMYAKCGALMEACLIFDDMEIKDAVSWNAIIAAHEQ 450
Query: 65 SCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPV 124
+ ++ + ++ M+++ P+ YTF S+ +CA + G HG +K+G+ + V
Sbjct: 451 NEHVEETLALFVSMLRSTMEPDDYTFGSVVKACAGKKALNYGMEVHGRVIKSGMGLDWFV 510
Query: 125 MNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNV 184
+++I+MY C M V+ A ++ + + ER
Sbjct: 511 GSAIIDMY-------CKCGMLVE------------------------AEKIHERLEERTT 539
Query: 185 VSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGY 244
VSWN +ISG+S +L F M++ G ++ T A+VL C A G+ +HG
Sbjct: 540 VSWNSIISGFSSEKQGENALSYFSRMLQVGVIPDNFTYATVLDICANLATVELGKQIHGQ 599
Query: 245 TVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEG 304
++ L ++ + + ++D+YSKC ++ ++ +F+ R+ V W+AMI + HG E+
Sbjct: 600 ILKLQLHSDVYIASTIVDMYSKCGNMQDSRIMFEKAPKRDYVTWSAMICAYAYHGLGEDA 659
Query: 305 IKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHY 364
IKLF + ++ P+ FI V+ AC + +G YFR+M Y + P HY
Sbjct: 660 IKLFEEM-----QLQNVKPNHTIFISVLRACAHMGFVDKGLHYFREMRSHYGLDPQMEHY 714
Query: 365 WCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSF 424
CM +L + EA E++ MP + D+ ++W +LL +CR QG V + E+ A S
Sbjct: 715 SCMVDLLGRSGQVNEALELIESMPFEADD-----VIWRTLLGICRLQGNVEVAEKAANSL 769
Query: 425 VDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLKEVVEKLKVG 484
+ +DPQD S Y L NVYA+AG W +VA++R MK ++ + PGC + +++ V VG
Sbjct: 770 LQLDPQDSSAYVLLSNVYAIAGMWGEVAKIRSFMKNYKLKKEPGCSWIQVRDEVHAFLVG 829
Score = 147 bits (370), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 99/349 (28%), Positives = 168/349 (48%), Gaps = 16/349 (4%)
Query: 89 TFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQM 148
TF +F C+ + G H G + V N L+ Y ++ A N+F +M
Sbjct: 40 TFSHIFQKCSNLKAINPGKQAHAQITVTGFVPTVFVSNCLLQFYCKCLNLNYAFNVFDKM 99
Query: 149 SPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFR 208
RD+ISWN+++ G+ G+M A LFD MPER+VVSWN M+S Y ++G S+++F
Sbjct: 100 PQRDVISWNTMIFGYAGVGNMEFAQFLFDSMPERDVVSWNSMLSCYLQNGFHRKSIEIFT 159
Query: 209 EMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQ 268
+M + + T A VL AC + G VH ++ +++ TAL+D+YS C+
Sbjct: 160 KMRLLEIQHDYATFAVVLKACTGIEDYGLGLQVHCLAIQMGFDSDVVTGTALVDMYSTCK 219
Query: 269 KVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITF 328
K++ A +F M +RN VCW+A+I G+ + + EG+KL+ +++ G +S + TF
Sbjct: 220 KLDHAFNIFCEMPERNSVCWSAVIAGYVRNDRFTEGLKLYKVMLD---EGMGVS--QATF 274
Query: 329 IGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMA----NLYAGAELTEEAEEIL 384
+C G + + Y +K NF + + ++YA + +A ++
Sbjct: 275 ASAFRSCAGLSAFELGTQ-----LHAYALKTNFGYDNIVGTATLDMYAKCDRMVDARKVF 329
Query: 385 RKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFS 433
P N + + V + A+ + L KS++D D S
Sbjct: 330 NTFP--NPTRQSHNALIVGYARQDQVLEALEIFRSLQKSYLDFDEISLS 376
Score = 122 bits (306), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 101/407 (24%), Positives = 174/407 (42%), Gaps = 52/407 (12%)
Query: 5 LQIQAHLITSGLFFNNSFWT-INLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAYS 63
L +Q H + + F++ T L+ + D+ +F + + C +AVI Y
Sbjct: 188 LGLQVHCLAIQMGFDSDVVTGTALVDMYSTCKKLDHAFNIFCEMPERNSVCWSAVIAGYV 247
Query: 64 NSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELP 123
+ +G+ Y M+ G + TF S F SCA E G H ALK ++
Sbjct: 248 RNDRFTEGLKLYKVMLDEGMGVSQATFASAFRSCAGLSAFELGTQLHAYALKTNFGYDNI 307
Query: 124 VMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERN 183
V + ++MY C R M A ++F+ P
Sbjct: 308 VGTATLDMYA-----KCDR--------------------------MVDARKVFNTFPNPT 336
Query: 184 VVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHG 243
S N +I GY++ +L++FR + KS ++ +++ LTAC + EG +HG
Sbjct: 337 RQSHNALIVGYARQDQVLEALEIFRSLQKSYLDFDEISLSGALTACSAIKGYLEGIQLHG 396
Query: 244 YTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEE 303
V+ L NI + ++D+Y+KC + A +FD M ++ V WNA+I H + EE
Sbjct: 397 LAVKCGLDFNICVANTILDMYAKCGALMEACLIFDDMEIKDAVSWNAIIAAHEQNEHVEE 456
Query: 304 GIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAH 363
+ LF +++ T + PD+ TF V+ AC + L G + ++ IK
Sbjct: 457 TLALFVSMLRST-----MEPDDYTFGSVVKACAGKKALNYGMEVHGRV-----IKSGMGL 506
Query: 364 YW----CMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLS 406
W + ++Y + EAE+I ++ E ++ W S++S
Sbjct: 507 DWFVGSAIIDMYCKCGMLVEAEKIHERLEERT------TVSWNSIIS 547
>gi|357462223|ref|XP_003601393.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|358344321|ref|XP_003636238.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355490441|gb|AES71644.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355502173|gb|AES83376.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 486
Score = 241 bits (614), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 136/444 (30%), Positives = 226/444 (50%), Gaps = 16/444 (3%)
Query: 34 FGSPDYTVLVFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSL 93
FG Y +F + P TF N +I+A+S+S P +F+ +M +N P+ ++F L
Sbjct: 54 FGDLSYAHNMFDQMPQPTTFFYNTLIRAHSHSTTPSFSSLFFNRMRRNSIAPDEFSFTFL 113
Query: 94 FGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMS---- 149
S + T + HG K G L V N+LI++Y G AR +F
Sbjct: 114 LKSRSFTMPLVHD--IHGAVFKFGFCRHLHVQNALIHLYAVGGVTISARKVFEDAVRVGL 171
Query: 150 PRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFRE 209
D++SW+ ++ H ++G++ A ++FD MPER+VVSW IM+S YSK+ P +L LF+E
Sbjct: 172 DVDIVSWSGLLVAHAKAGELDVARKVFDGMPERDVVSWTIMLSAYSKAKRPHETLDLFQE 231
Query: 210 MMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQK 269
M +G ++ T+ SV++AC GR VH + + L +LID+Y KC
Sbjct: 232 MRLAGVWPDEVTVLSVISACAELGDAEMGRMVHKFVEENGFGWMVALCNSLIDMYGKCGC 291
Query: 270 VEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFI 329
+E A +VFD ++L+ WNAM++ HG E+ +LF ++ G + PD +T +
Sbjct: 292 LEEAWQVFDRTKRKSLITWNAMMMVCANHGYAEDAFRLFEGMI-----GSGVVPDGVTIL 346
Query: 330 GVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPE 389
++ A + EG + F M Y ++P HY + ++ + +EA +L MP
Sbjct: 347 ALLVAYAHKGFVDEGIRLFESMQRDYGVEPRIEHYGAVVDMLGRSGRLQEAYNLLTSMPI 406
Query: 390 DNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWE 449
+++ ++W +LL CR G V M ER+ K +++ P + Y L ++Y AG+
Sbjct: 407 PSND-----VIWGALLGACRIHGDVGMGERVIKKLLELKPDEGGYYILLRDIYVAAGRTA 461
Query: 450 DVARVRELMKKRRMGRMPGCRLVD 473
+ +R+ M + PGC V+
Sbjct: 462 EANEMRQAMLASGARKNPGCSWVE 485
Score = 81.6 bits (200), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 77/306 (25%), Positives = 132/306 (43%), Gaps = 43/306 (14%)
Query: 23 WTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNG 82
W+ L+ H A G D VF + ++ AYS + P + + + +M G
Sbjct: 178 WSGLLVAH-AKAGELDVARKVFDGMPERDVVSWTIMLSAYSKAKRPHETLDLFQEMRLAG 236
Query: 83 FMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCAR 142
P+ T +S+ +CA+ G E G M H +NG + + + NSLI+MYG G ++ A
Sbjct: 237 VWPDEVTVLSVISACAELGDAEMGRMVHKFVEENGFGWMVALCNSLIDMYGKCGCLEEAW 296
Query: 143 NMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGC 202
+F + + LI+WN+++ + A H GY++
Sbjct: 297 QVFDRTKRKSLITWNAMMM-------VCANH-------------------GYAED----- 325
Query: 203 SLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEG-RSVHGYTVRTSLKPNIILDTALI 261
+ +LF M+ SG + T+ ++L A +EG R ++P I A++
Sbjct: 326 AFRLFEGMIGSGVVPDGVTILALLVAYAHKGFVDEGIRLFESMQRDYGVEPRIEHYGAVV 385
Query: 262 DLYSKCQKVEVAQRVFDSMA-DRNLVCWNAMILGHC-IHGKPEEGIKLFTALVNGTVAGG 319
D+ + +++ A + SM N V W A+ LG C IHG G ++ L+
Sbjct: 386 DMLGRSGRLQEAYNLLTSMPIPSNDVIWGAL-LGACRIHGDVGMGERVIKKLLE------ 438
Query: 320 SISPDE 325
+ PDE
Sbjct: 439 -LKPDE 443
>gi|297743088|emb|CBI35955.3| unnamed protein product [Vitis vinifera]
Length = 708
Score = 240 bits (613), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 127/405 (31%), Positives = 222/405 (54%), Gaps = 19/405 (4%)
Query: 104 ERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGH 163
+ G + HG +K G + L V NSLI +YG G ++ AR +F+++ ++++SWN+++S +
Sbjct: 288 DEGKVIHGYVVKGGFENYLFVKNSLICLYGKHGNVNAARILFLEIKTKNIVSWNALISSY 347
Query: 164 VRSGDMSAAHELF------DIMP--ERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGF 215
G A +F D P NVVSW+ +I G++ G +L+LFR M +
Sbjct: 348 ADLGWCDEAFAIFLQLEKTDEYPMVRPNVVSWSAVIGGFASKGQGEEALELFRRMQLAKV 407
Query: 216 RGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQR 275
+ N T+ASVL+ C A + GR +HG+ VR+ + NI++ LI++Y+K +
Sbjct: 408 KANSVTIASVLSVCAELAALHLGREIHGHVVRSLMDGNILVGNGLINMYTKSGSFKEGNL 467
Query: 276 VFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICAC 335
VF+ + +++L+ WN M+ G+ IHG E I+ F ++ PD +TF+ V+ AC
Sbjct: 468 VFEKIENKDLISWNTMVAGYGIHGLGENAIRTFDQMIK-----DGFEPDGVTFVAVLSAC 522
Query: 336 VRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMS 395
A L+ EGR+ F +MI ++++P HY CM +L A L +EA ++++ MP + +
Sbjct: 523 SHAGLVAEGRELFDKMIKEFRVEPQMEHYACMVDLLGRAGLLQEASKVVKSMPVEPN--- 579
Query: 396 FESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVR 455
+ +W +LL+ CR + E A +++ + Y L N+YA +G+WED A+VR
Sbjct: 580 --ACVWGALLNSCRMHKNTEVAEETASQIFNLNSEIAGSYMLLSNIYAASGRWEDSAKVR 637
Query: 456 ELMKKRRMGRMPGCRLVDLKEVVEKLKVGHFWRGGMKEEVNKMME 500
K + + + PG + +K+ V G+ + EEV ++++
Sbjct: 638 ISAKTKGLKKTPGQSWIQVKKKVYMFSAGNTQHAEL-EEVYRILK 681
Score = 141 bits (356), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 102/364 (28%), Positives = 176/364 (48%), Gaps = 14/364 (3%)
Query: 6 QIQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFK-----CINNPGTFCVNAVIK 60
QI + +I +G ++F ++ A FG VF+ C +N N++++
Sbjct: 52 QIHSQIIVTG-SHRSAFLAARVVSVYAGFGLVSDAQRVFEVSPIECFSN--LLLWNSILR 108
Query: 61 AYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDF 120
A ++ + Y +M K G + +TF + +CA G + HG ++ G +
Sbjct: 109 ANVAHGYCEEALEIYCRMRKLGVSADGFTFPLVIRACALMGSRKLCRSVHGHVVEMGFQW 168
Query: 121 ELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMP 180
L V N L+ MYG G MD AR +F +M+ R +SWN++VSG+ + D A E+F +M
Sbjct: 169 NLHVGNELMGMYGKIGRMDDARKVFERMAVRSCVSWNTMVSGYALNYDCHGASEMFRMMG 228
Query: 181 ----ERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFN 236
E N+V+W ++S +++ G +++LF M G + +A VL+ A F+
Sbjct: 229 SAGLEPNLVTWTSLLSSHARCGQHVETMELFGRMRMRGIGATAEALAVVLSVSVDLAAFD 288
Query: 237 EGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHC 296
EG+ +HGY V+ + + + +LI LY K V A+ +F + +N+V WNA+I +
Sbjct: 289 EGKVIHGYVVKGGFENYLFVKNSLICLYGKHGNVNAARILFLEIKTKNIVSWNALISSYA 348
Query: 297 IHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYK 356
G +E +F L T + P+ +++ VI E + FR+M K
Sbjct: 349 DLGWCDEAFAIFLQL-EKTDEYPMVRPNVVSWSAVIGGFASKGQGEEALELFRRM-QLAK 406
Query: 357 IKPN 360
+K N
Sbjct: 407 VKAN 410
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 63/276 (22%), Positives = 115/276 (41%), Gaps = 41/276 (14%)
Query: 27 LLKHSADFGSPDYTVLVFKCINN--------PGTFCVNAVIKAYSNSCVPDQGVVFYLQM 78
L+ AD G D +F + P +AVI +++ ++ + + +M
Sbjct: 343 LISSYADLGWCDEAFAIFLQLEKTDEYPMVRPNVVSWSAVIGGFASKGQGEEALELFRRM 402
Query: 79 IKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAM 138
NS T S+ CA+ + G HG +++ +D + V N LINMY G+
Sbjct: 403 QLAKVKANSVTIASVLSVCAELAALHLGREIHGHVVRSLMDGNILVGNGLINMYTKSGSF 462
Query: 139 DCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSG 198
+F ++ +DLISWN+ M++GY G
Sbjct: 463 KEGNLVFEKIENKDLISWNT-------------------------------MVAGYGIHG 491
Query: 199 NPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRT-SLKPNIILD 257
+++ F +M+K GF + T +VL+AC + EGR + ++ ++P +
Sbjct: 492 LGENAIRTFDQMIKDGFEPDGVTFVAVLSACSHAGLVAEGRELFDKMIKEFRVEPQMEHY 551
Query: 258 TALIDLYSKCQKVEVAQRVFDSM-ADRNLVCWNAMI 292
++DL + ++ A +V SM + N W A++
Sbjct: 552 ACMVDLLGRAGLLQEASKVVKSMPVEPNACVWGALL 587
>gi|356495448|ref|XP_003516589.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Glycine max]
Length = 667
Score = 240 bits (613), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 129/435 (29%), Positives = 232/435 (53%), Gaps = 13/435 (2%)
Query: 43 VFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGC 102
VF I++ N++I YS D+ ++ + +M++ G + +T VSL + +K
Sbjct: 194 VFDDISDRTIVSWNSMIAGYSKMGFCDEAILLFQEMLQLGVEADVFTLVSLLSASSKHCN 253
Query: 103 VERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSG 162
++ G H + GV+ + V N+LI+MY G + A+++F QM +D++SW S+V+
Sbjct: 254 LDLGRFVHLYIVITGVEIDSIVTNALIDMYAKCGHLQFAKHVFDQMLDKDVVSWTSMVNA 313
Query: 163 HVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTM 222
+ G + A ++F+ MP +NVVSWN +I + G +++LF M SG +D T+
Sbjct: 314 YANQGLVENAVQIFNHMPVKNVVSWNSIICCLVQEGQYTEAVELFHRMCISGVMPDDATL 373
Query: 223 ASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMAD 282
S+L+ C + G+ H Y + ++ L +LID+Y+KC ++ A +F M +
Sbjct: 374 VSILSCCSNTGDLALGKQAHCYICDNIITVSVTLCNSLIDMYAKCGALQTAIDIFFGMPE 433
Query: 283 RNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLT 342
+N+V WN +I +HG EE I++F ++ + PDEITF G++ AC + L+
Sbjct: 434 KNVVSWNVIIGALALHGFGEEAIEMFKSM-----QASGLYPDEITFTGLLSACSHSGLVD 488
Query: 343 EGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWV 402
GR YF MI ++I P HY CM +L EA +++KMP D ++W
Sbjct: 489 MGRYYFDIMISTFRISPGVEHYACMVDLLGRGGFLGEAMTLIQKMPVKPD-----VVVWG 543
Query: 403 SLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRR 462
+LL CR G + + +++ K +++ + Y L N+Y+ + +W+D+ ++R++M
Sbjct: 544 ALLGACRIYGNLEIAKQIMKQLLELGRFNSGLYVLLSNMYSESQRWDDMKKIRKIMDDSG 603
Query: 463 MGRMPGCRLVDLKEV 477
+ + CR + E+
Sbjct: 604 IKK---CRAISFIEI 615
Score = 152 bits (384), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 114/418 (27%), Positives = 188/418 (44%), Gaps = 61/418 (14%)
Query: 1 MKQLLQIQAHLITSGLFFNNSFWTI-NLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVI 59
MK+L + A +I GL T+ LL G Y L+F I P F N +I
Sbjct: 52 MKRLKLVHAQIILHGL--AAQVVTLGKLLSLCVQEGDLRYAHLLFDQIPQPNKFMYNHLI 109
Query: 60 KAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVD 119
+ YSNS P + ++ + QM+ G MPN +TF + +CA + H A+K G
Sbjct: 110 RGYSNSNDPMKSLLLFRQMVSAGPMPNQFTFPFVLKACAAKPFYWEAVIVHAQAIKLG-- 167
Query: 120 FELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIM 179
M P + N+I++ +V + +A ++FD +
Sbjct: 168 ----------------------------MGPHACVQ-NAILTAYVACRLILSARQVFDDI 198
Query: 180 PERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGR 239
+R +VSWN MI+GYSK G ++ LF+EM++ G + T+ S+L+A + + GR
Sbjct: 199 SDRTIVSWNSMIAGYSKMGFCDEAILLFQEMLQLGVEADVFTLVSLLSASSKHCNLDLGR 258
Query: 240 SVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHG 299
VH Y V T ++ + I+ ALID+Y+KC ++ A+ VFD M D+++V W +M+ + G
Sbjct: 259 FVHLYIVITGVEIDSIVTNALIDMYAKCGHLQFAKHVFDQMLDKDVVSWTSMVNAYANQG 318
Query: 300 KPEEGIKLFTAL-VNGTVAGGSI-------------------------SPDEITFIGVIC 333
E +++F + V V+ SI PD+ T + ++
Sbjct: 319 LVENAVQIFNHMPVKNVVSWNSIICCLVQEGQYTEAVELFHRMCISGVMPDDATLVSILS 378
Query: 334 ACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDN 391
C L G++ + D I + + ++YA + A +I MPE N
Sbjct: 379 CCSNTGDLALGKQAHCYICDNI-ITVSVTLCNSLIDMYAKCGALQTAIDIFFGMPEKN 435
Score = 113 bits (282), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 85/306 (27%), Positives = 137/306 (44%), Gaps = 37/306 (12%)
Query: 153 LISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMK 212
+++ ++S V+ GD+ AH LFD +P+ N +N +I GYS S +P SL LFR+M+
Sbjct: 71 VVTLGKLLSLCVQEGDLRYAHLLFDQIPQPNKFMYNHLIRGYSNSNDPMKSLLLFRQMVS 130
Query: 213 SGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEV 272
+G N T VL AC + E VH ++ + P+ + A++ Y C+ +
Sbjct: 131 AGPMPNQFTFPFVLKACAAKPFYWEAVIVHAQAIKLGMGPHACVQNAILTAYVACRLILS 190
Query: 273 AQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTAL--------------------- 311
A++VFD ++DR +V WN+MI G+ G +E I LF +
Sbjct: 191 ARQVFDDISDRTIVSWNSMIAGYSKMGFCDEAILLFQEMLQLGVEADVFTLVSLLSASSK 250
Query: 312 ---------VNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFA 362
V+ + + D I +I + L + F QM+D +
Sbjct: 251 HCNLDLGRFVHLYIVITGVEIDSIVTNALIDMYAKCGHLQFAKHVFDQMLD-----KDVV 305
Query: 363 HYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAK 422
+ M N YA L E A +I MP N +S+ SI+ L+ ++ AV + R+
Sbjct: 306 SWTSMVNAYANQGLVENAVQIFNHMPVKN-VVSWNSII-CCLVQEGQYTEAVELFHRMCI 363
Query: 423 SFVDMD 428
S V D
Sbjct: 364 SGVMPD 369
>gi|334185549|ref|NP_188908.2| uncharacterized protein [Arabidopsis thaliana]
gi|332643144|gb|AEE76665.1| uncharacterized protein [Arabidopsis thaliana]
Length = 938
Score = 240 bits (613), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 134/431 (31%), Positives = 231/431 (53%), Gaps = 13/431 (3%)
Query: 56 NAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALK 115
NA+ Y + + + + M+ +G P+ + +S SC++ + G CHG L+
Sbjct: 306 NAMASNYVRQGLTREALGVFNLMMDSGVRPDRISMLSAISSCSQLRNILWGKSCHGYVLR 365
Query: 116 NGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHEL 175
NG + + N+LI+MY D A +F +MS + +++WNSIV+G+V +G++ AA E
Sbjct: 366 NGFESWDNICNALIDMYMKCHRQDTAFRIFDRMSNKTVVTWNSIVAGYVENGEVDAAWET 425
Query: 176 FDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMM-KSGFRGNDKTMASVLTACGRSAR 234
F+ MPE+N+VSWN +ISG + ++++F M + G + TM S+ +ACG
Sbjct: 426 FETMPEKNIVSWNTIISGLVQGSLFEEAIEVFCSMQSQEGVNADGVTMMSIASACGHLGA 485
Query: 235 FNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILG 294
+ + ++ Y + ++ ++ L T L+D++S+C E A +F+S+ +R++ W A I
Sbjct: 486 LDLAKWIYYYIEKNGIQLDVRLGTTLVDMFSRCGDPESAMSIFNSLTNRDVSAWTAAIGA 545
Query: 295 HCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDF 354
+ G E I+LF ++ + PD + F+G + AC L+ +G++ F M+
Sbjct: 546 MAMAGNAERAIELFDDMIE-----QGLKPDGVAFVGALTACSHGGLVQQGKEIFYSMLKL 600
Query: 355 YKIKPNFAHYWCMANLYAGAELTEEAEEILRKMP-EDNDNMSFESIMWVSLLSLCRFQGA 413
+ + P HY CM +L A L EEA +++ MP E ND ++W SLL+ CR QG
Sbjct: 601 HGVSPEDVHYGCMVDLLGRAGLLEEAVQLIEDMPMEPND------VIWNSLLAACRVQGN 654
Query: 414 VAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVD 473
V M A+ + P+ Y L NVYA AG+W D+A+VR MK++ + + PG +
Sbjct: 655 VEMAAYAAEKIQVLAPERTGSYVLLSNVYASAGRWNDMAKVRLSMKEKGLRKPPGTSSIQ 714
Query: 474 LKEVVEKLKVG 484
++ + G
Sbjct: 715 IRGKTHEFTSG 725
Score = 137 bits (345), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 95/341 (27%), Positives = 165/341 (48%), Gaps = 44/341 (12%)
Query: 1 MKQLLQIQAHLITSGLFFNNSFWTIN-LLKHSADFGSPD---YTVLVFKCINNPGT-FCV 55
+ +L L GL +N TI L+ S + G+ + + VF+ + GT F
Sbjct: 45 IDELKMFHRSLTKQGL--DNDVSTITKLVARSCELGTRESLSFAKEVFENSESYGTCFMY 102
Query: 56 NAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALK 115
N++I+ Y++S + ++ ++ +L+M+ +G P+ YTF +CAK+ G HGL +K
Sbjct: 103 NSLIRGYASSGLCNEAILLFLRMMNSGISPDKYTFPFGLSACAKSRAKGNGIQIHGLIVK 162
Query: 116 NGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHEL 175
G A+++FVQ NS+V + G++ +A ++
Sbjct: 163 MGY----------------------AKDLFVQ---------NSLVHFYAECGELDSARKV 191
Query: 176 FDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSG-FRGNDKTMASVLTACGRSAR 234
FD M ERNVVSW MI GY++ ++ LF M++ N TM V++AC +
Sbjct: 192 FDEMSERNVVSWTSMICGYARRDFAKDAVDLFFRMVRDEEVTPNSVTMVCVISACAKLED 251
Query: 235 FNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILG 294
G V+ + + ++ N ++ +AL+D+Y KC ++VA+R+FD NL NAM
Sbjct: 252 LETGEKVYAFIRNSGIEVNDLMVSALVDMYMKCNAIDVAKRLFDEYGASNLDLCNAMASN 311
Query: 295 HCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICAC 335
+ G E + +F +++ V PD I+ + I +C
Sbjct: 312 YVRQGLTREALGVFNLMMDSGV-----RPDRISMLSAISSC 347
Score = 106 bits (264), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 84/358 (23%), Positives = 152/358 (42%), Gaps = 60/358 (16%)
Query: 7 IQAHLITSGLFFNNSFWTINLLKH-SADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSNS 65
IQ H + + + + N L H A+ G D VF ++ ++I Y+
Sbjct: 154 IQIHGLIVKMGYAKDLFVQNSLVHFYAECGELDSARKVFDEMSERNVVSWTSMICGYARR 213
Query: 66 CVPDQGVVFYLQMIKNG-FMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPV 124
V + +M+++ PNS T V + +CAK +E G + +G++ +
Sbjct: 214 DFAKDAVDLFFRMVRDEEVTPNSVTMVCVISACAKLEDLETGEKVYAFIRNSGIEVNDLM 273
Query: 125 MNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNV 184
+++L++MY A+D A+ LFD N+
Sbjct: 274 VSALVDMYMKCNAIDVAK-------------------------------RLFDEYGASNL 302
Query: 185 VSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGY 244
N M S Y + G +L +F MM SG R + +M S +++C + G+S HGY
Sbjct: 303 DLCNAMASNYVRQGLTREALGVFNLMMDSGVRPDRISMLSAISSCSQLRNILWGKSCHGY 362
Query: 245 TVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGK---- 300
+R + + ALID+Y KC + + A R+FD M+++ +V WN+++ G+ +G+
Sbjct: 363 VLRNGFESWDNICNALIDMYMKCHRQDTAFRIFDRMSNKTVVTWNSIVAGYVENGEVDAA 422
Query: 301 -------PEEGIKLFTALVNGTVAGG----------------SISPDEITFIGVICAC 335
PE+ I + +++G V G ++ D +T + + AC
Sbjct: 423 WETFETMPEKNIVSWNTIISGLVQGSLFEEAIEVFCSMQSQEGVNADGVTMMSIASAC 480
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 49/162 (30%), Positives = 87/162 (53%), Gaps = 4/162 (2%)
Query: 187 WNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTV 246
+N +I GY+ SG ++ LF MM SG + T L+AC +S G +HG V
Sbjct: 102 YNSLIRGYASSGLCNEAILLFLRMMNSGISPDKYTFPFGLSACAKSRAKGNGIQIHGLIV 161
Query: 247 RTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIK 306
+ ++ + +L+ Y++C +++ A++VFD M++RN+V W +MI G+ ++ +
Sbjct: 162 KMGYAKDLFVQNSLVHFYAECGELDSARKVFDEMSERNVVSWTSMICGYARRDFAKDAVD 221
Query: 307 LFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYF 348
LF +V ++P+ +T + VI AC + E L G K +
Sbjct: 222 LFFRMVRDE----EVTPNSVTMVCVISACAKLEDLETGEKVY 259
>gi|115469684|ref|NP_001058441.1| Os06g0694300 [Oryza sativa Japonica Group]
gi|53791823|dbj|BAD53889.1| selenium-binding protein-like [Oryza sativa Japonica Group]
gi|53792844|dbj|BAD53877.1| selenium-binding protein-like [Oryza sativa Japonica Group]
gi|113596481|dbj|BAF20355.1| Os06g0694300 [Oryza sativa Japonica Group]
gi|125598347|gb|EAZ38127.1| hypothetical protein OsJ_22476 [Oryza sativa Japonica Group]
Length = 648
Score = 240 bits (613), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 123/363 (33%), Positives = 206/363 (56%), Gaps = 9/363 (2%)
Query: 114 LKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAH 173
L G D V NSLI Y G + AR +F +M +D+ISW SIV + RSGDM +A
Sbjct: 169 LVGGFDRHRFVENSLIGAYVACGDVGAARKVFDEMVEKDVISWTSIVVAYTRSGDMRSAE 228
Query: 174 ELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSA 233
E+F P +++V+W M++GY+++ P +L++F M + G ++ ++ ++AC +
Sbjct: 229 EVFGRCPVKDMVAWTAMVTGYAQNAMPVKALEVFDRMAELGMVIDEVSLTGAISACAQLG 288
Query: 234 RFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMIL 293
V RT N+++ + L+D+Y+KC ++ A +VF M ++N+ +++MI
Sbjct: 289 ALRRAAWVQEIAERTGFGNNVVVGSGLVDMYAKCGLIDEASKVFYGMQEKNVYTYSSMIA 348
Query: 294 GHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMID 353
G HG+ E I LF +VN ++ P+ +TFIGV+ AC A ++ EGR YF QM D
Sbjct: 349 GLASHGRASEAIALFKEMVN----RANVEPNHVTFIGVLTACSHAGMVGEGRYYFAQMKD 404
Query: 354 FYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGA 413
Y I P+ HY CM +L A L +EA +++R M +++ +W +LL CR G
Sbjct: 405 KYGIMPSADHYACMVDLLGRAGLVDEALDLVRSM-----SVTPHGGVWGALLGACRIHGK 459
Query: 414 VAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVD 473
+ + +A+ ++P+ Y L N+ A AG+WE+V++VR LM+K+R+ + P L +
Sbjct: 460 SEIAKVVAEHLFKLEPESIGNYVLLSNILASAGKWEEVSKVRILMRKQRLKKDPAVSLFE 519
Query: 474 LKE 476
++
Sbjct: 520 GRD 522
>gi|34393605|dbj|BAC83258.1| pentatricopeptide (PPR) repeat-containing protein-like protein
[Oryza sativa Japonica Group]
gi|50509373|dbj|BAD30928.1| pentatricopeptide (PPR) repeat-containing protein-like protein
[Oryza sativa Japonica Group]
Length = 808
Score = 240 bits (613), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 146/469 (31%), Positives = 232/469 (49%), Gaps = 19/469 (4%)
Query: 43 VFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGC 102
VF+ ++ NA+I Y S + + +M+ + +TF S+ +CA G
Sbjct: 256 VFEEVDGKFDVVWNAMISGYVQSGMCADAFELFRRMVSEKVPLDEFTFTSVLSACANAGF 315
Query: 103 VERGGMCHGLALKNGVDF----ELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNS 158
G HG ++ +F LPV N+L+ +Y G + A+ +F M+ +D++SWN+
Sbjct: 316 FVHGKSVHGQIIRLQPNFVPEAALPVNNALVTLYSKGGKIVIAKRIFDTMNLKDVVSWNT 375
Query: 159 IVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGN 218
I+SG++ SG + A E+F +MP +N +SW +M+SGY G +LKLF +M +
Sbjct: 376 ILSGYIDSGCLDKAVEVFKVMPYKNDLSWMVMVSGYVHGGLSEDALKLFNQMRAEDVKPC 435
Query: 219 DKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFD 278
D T A + ACG GR +H + V+ + + AL+ +Y+KC V A+ VF
Sbjct: 436 DYTYAGAIAACGELGALKHGRQLHAHLVQCGFEASNSAGNALLTMYAKCGAVNDARLVFL 495
Query: 279 SMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRA 338
M + + V WNAMI HG E ++LF +V I PD I+F+ ++ AC A
Sbjct: 496 VMPNLDSVSWNAMISALGQHGHGREALELFDQMV-----AEGIDPDRISFLTILTACNHA 550
Query: 339 ELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFES 398
L+ EG YF M + I P HY + +L + EA ++++ MP FE
Sbjct: 551 GLVDEGFHYFESMKRDFGISPGEDHYARLIDLLGRSGRIGEARDLIKTMP-------FEP 603
Query: 399 I--MWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRE 456
+W ++LS CR G + A M PQ Y L N Y+ AG+W D ARVR+
Sbjct: 604 TPSIWEAILSGCRTNGDMEFGAYAADQLFRMIPQHDGTYILLSNTYSAAGRWVDAARVRK 663
Query: 457 LMKKRRMGRMPGCRLVDLKEVVEKLKVGHFWRGGMKEEVNKMMECRQSR 505
LM+ R + + PGC +++ + VG + +EV + +E +R
Sbjct: 664 LMRDRGVKKEPGCSWIEVGSKIHVFLVGDT-KHPEAQEVYQFLEVIGAR 711
Score = 152 bits (384), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 131/480 (27%), Positives = 223/480 (46%), Gaps = 81/480 (16%)
Query: 52 TFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFM-PNSYTFVSLFGSC------AKTGCVE 104
T NA++ A++ + + V + ++ +G + P+ Y+F +L + A C +
Sbjct: 127 TVLHNAMMSAFARASLAAPAVSVFHALLGSGSLRPDDYSFTALISAVGQMHNLAAPHCTQ 186
Query: 105 RGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDC--------ARNMFVQMSPRDLISW 156
H LK+G L V N+LI +Y M C AR + +M +D ++W
Sbjct: 187 ----LHCSVLKSGAAAVLSVSNALIALY-----MKCDTPEASWDARKVLDEMPDKDDLTW 237
Query: 157 NSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFR 216
++V G+VR GD++AA +F+ + + V WN MISGY +SG + +LFR M+
Sbjct: 238 TTMVVGYVRRGDVNAARSVFEEVDGKFDVVWNAMISGYVQSGMCADAFELFRRMVSEKVP 297
Query: 217 GNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNII------LDTALIDLYSKCQKV 270
++ T SVL+AC + F G+SVHG +R L+PN + ++ AL+ LYSK K+
Sbjct: 298 LDEFTFTSVLSACANAGFFVHGKSVHGQIIR--LQPNFVPEAALPVNNALVTLYSKGGKI 355
Query: 271 EVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFT-----------ALVNGTVAGG 319
+A+R+FD+M +++V WN ++ G+ G ++ +++F +V+G V GG
Sbjct: 356 VIAKRIFDTMNLKDVVSWNTILSGYIDSGCLDKAVEVFKVMPYKNDLSWMVMVSGYVHGG 415
Query: 320 ---------------SISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHY 364
+ P + T+ G I AC L GR+ ++ N A
Sbjct: 416 LSEDALKLFNQMRAEDVKPCDYTYAGAIAACGELGALKHGRQLHAHLVQCGFEASNSAGN 475
Query: 365 WCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQG----AVAMVERL 420
+ +YA +A + MP + +S+ W +++S G A+ + +++
Sbjct: 476 -ALLTMYAKCGAVNDARLVFLVMP------NLDSVSWNAMISALGQHGHGREALELFDQM 528
Query: 421 AKSFVDMDPQDFSRYQFLLNVYAV--AGQWEDVARVRELMKKRRMGRMPG----CRLVDL 474
+D D R FL + A AG ++ E M KR G PG RL+DL
Sbjct: 529 VAEGIDPD-----RISFLTILTACNHAGLVDEGFHYFESM-KRDFGISPGEDHYARLIDL 582
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 54/216 (25%), Positives = 94/216 (43%), Gaps = 9/216 (4%)
Query: 33 DFGSPDYTVLVFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVS 92
D G D V VFK + ++ Y + + + + + QM P YT+
Sbjct: 382 DSGCLDKAVEVFKVMPYKNDLSWMVMVSGYVHGGLSEDALKLFNQMRAEDVKPCDYTYAG 441
Query: 93 LFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRD 152
+C + G ++ G H ++ G + N+L+ MY GA++ AR +F+ M D
Sbjct: 442 AIAACGELGALKHGRQLHAHLVQCGFEASNSAGNALLTMYAKCGAVNDARLVFLVMPNLD 501
Query: 153 LISWNSIVSGHVRSGDMSAAHELFDIM------PERNVVSWNIMISGYSKSGNPGCSLKL 206
+SWN+++S + G A ELFD M P+R +S+ +++ + +G
Sbjct: 502 SVSWNAMISALGQHGHGREALELFDQMVAEGIDPDR--ISFLTILTACNHAGLVDEGFHY 559
Query: 207 FREMMKS-GFRGNDKTMASVLTACGRSARFNEGRSV 241
F M + G + A ++ GRS R E R +
Sbjct: 560 FESMKRDFGISPGEDHYARLIDLLGRSGRIGEARDL 595
>gi|15226463|ref|NP_179705.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75206523|sp|Q9SKQ4.1|PP167_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g21090
gi|4803934|gb|AAD29807.1| unknown protein [Arabidopsis thaliana]
gi|330252028|gb|AEC07122.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 597
Score = 240 bits (613), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 130/443 (29%), Positives = 233/443 (52%), Gaps = 11/443 (2%)
Query: 42 LVFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTG 101
+VF + N ++ Y+ + + FY + ++G N ++F L +C K+
Sbjct: 134 VVFDSMPERDVVSWNTMVIGYAQDGNLHEALWFYKEFRRSGIKFNEFSFAGLLTACVKSR 193
Query: 102 CVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVS 161
++ HG L G + + S+I+ Y G M+ A+ F +M+ +D+ W +++S
Sbjct: 194 QLQLNRQAHGQVLVAGFLSNVVLSCSIIDAYAKCGQMESAKRCFDEMTVKDIHIWTTLIS 253
Query: 162 GHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKT 221
G+ + GDM AA +LF MPE+N VSW +I+GY + G+ +L LFR+M+ G + T
Sbjct: 254 GYAKLGDMEAAEKLFCEMPEKNPVSWTALIAGYVRQGSGNRALDLFRKMIALGVKPEQFT 313
Query: 222 MASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMA 281
+S L A A G+ +HGY +RT+++PN I+ ++LID+YSK +E ++RVF
Sbjct: 314 FSSCLCASASIASLRHGKEIHGYMIRTNVRPNAIVISSLIDMYSKSGSLEASERVFRICD 373
Query: 282 DR-NLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAEL 340
D+ + V WN MI HG + +++ ++ V P+ T + ++ AC + L
Sbjct: 374 DKHDCVFWNTMISALAQHGLGHKALRMLDDMIKFRV-----QPNRTTLVVILNACSHSGL 428
Query: 341 LTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIM 400
+ EG ++F M + I P+ HY C+ +L A +E + +MP + D +
Sbjct: 429 VEEGLRWFESMTVQHGIVPDQEHYACLIDLLGRAGCFKELMRKIEEMPFEPDKH-----I 483
Query: 401 WVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKK 460
W ++L +CR G + ++ A + +DP+ + Y L ++YA G+WE V ++R +MKK
Sbjct: 484 WNAILGVCRIHGNEELGKKAADELIKLDPESSAPYILLSSIYADHGKWELVEKLRGVMKK 543
Query: 461 RRMGRMPGCRLVDLKEVVEKLKV 483
RR+ + +++++ VE V
Sbjct: 544 RRVNKEKAVSWIEIEKKVEAFTV 566
Score = 165 bits (417), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 115/392 (29%), Positives = 185/392 (47%), Gaps = 40/392 (10%)
Query: 47 INNPGT--FCV-NAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCV 103
I+NP CV + + ++ Q V + + G SL C T +
Sbjct: 3 ISNPRKRPICVAQSFLSKHATKAELSQAVSRLESLTQQGIRLPFDLLASLLQQCGDTKSL 62
Query: 104 ERGGMCHGLALKNGVDFELP---VMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIV 160
++G H G F+ P + N LI MY G A +F QM R+L SWN++V
Sbjct: 63 KQGKWIHRHLKITG--FKRPNTLLSNHLIGMYMKCGKPIDACKVFDQMHLRNLYSWNNMV 120
Query: 161 SGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDK 220
SG+V+SG + A +FD MPER+VVSWN M+ GY++ GN +L ++E +SG + N+
Sbjct: 121 SGYVKSGMLVRARVVFDSMPERDVVSWNTMVIGYAQDGNLHEALWFYKEFRRSGIKFNEF 180
Query: 221 TMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSM 280
+ A +LTAC +S + R HG + N++L ++ID Y+KC ++E A+R FD M
Sbjct: 181 SFAGLLTACVKSRQLQLNRQAHGQVLVAGFLSNVVLSCSIIDAYAKCGQMESAKRCFDEM 240
Query: 281 ADRNLVCWNAMILGHCIHGKPEEGIKLF-----------TALVNGTVAGGS--------- 320
+++ W +I G+ G E KLF TAL+ G V GS
Sbjct: 241 TVKDIHIWTTLISGYAKLGDMEAAEKLFCEMPEKNPVSWTALIAGYVRQGSGNRALDLFR 300
Query: 321 ------ISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGA 374
+ P++ TF +CA L G++ MI ++PN + ++Y+ +
Sbjct: 301 KMIALGVKPEQFTFSSCLCASASIASLRHGKEIHGYMIR-TNVRPNAIVISSLIDMYSKS 359
Query: 375 ELTEEAEEILRKMPEDNDNMSFESIMWVSLLS 406
E +E + R + +D + W +++S
Sbjct: 360 GSLEASERVFRICDDKHD-----CVFWNTMIS 386
Score = 69.7 bits (169), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 68/284 (23%), Positives = 115/284 (40%), Gaps = 39/284 (13%)
Query: 191 ISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSL 250
+S ++ ++ + + G R +AS+L CG + +G+ +H + T
Sbjct: 18 LSKHATKAELSQAVSRLESLTQQGIRLPFDLLASLLQQCGDTKSLKQGKWIHRHLKITGF 77
Query: 251 K-PNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHG---------- 299
K PN +L LI +Y KC K A +VFD M RNL WN M+ G+ G
Sbjct: 78 KRPNTLLSNHLIGMYMKCGKPIDACKVFDQMHLRNLYSWNNMVSGYVKSGMLVRARVVFD 137
Query: 300 -KPEEGIKLFTALVNGTVAGGS---------------ISPDEITFIGVICACVRAELLTE 343
PE + + +V G G+ I +E +F G++ ACV++ L
Sbjct: 138 SMPERDVVSWNTMVIGYAQDGNLHEALWFYKEFRRSGIKFNEFSFAGLLTACVKSRQLQL 197
Query: 344 GRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESI-MWV 402
R+ Q++ N + + YA E A+ D M+ + I +W
Sbjct: 198 NRQAHGQVL-VAGFLSNVVLSCSIIDAYAKCGQMESAKRCF-------DEMTVKDIHIWT 249
Query: 403 SLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAG 446
+L+S G + E+L F +M ++ + L+ Y G
Sbjct: 250 TLISGYAKLGDMEAAEKL---FCEMPEKNPVSWTALIAGYVRQG 290
>gi|21740620|emb|CAD40778.1| OSJNBb0012E08.2 [Oryza sativa Japonica Group]
Length = 486
Score = 240 bits (613), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 131/363 (36%), Positives = 205/363 (56%), Gaps = 18/363 (4%)
Query: 124 VMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERN 183
V N+LI++Y D AR +F M D++S N++V G+V++G + A +F+ MPER+
Sbjct: 135 VSNALISLYARSALPDSARRVFDGMRAPDVVSHNALVHGYVKAGRLGLAVRVFEGMPERD 194
Query: 184 VVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHG 243
VSW +++G +K+G +++LF M + G+R +D +A+VL+ C + ++G+ VH
Sbjct: 195 AVSWGTVVAGCAKAGRLEKAVRLFDRMRREGYRPDDVALAAVLSCCAQLGALDKGQEVHE 254
Query: 244 YTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEE 303
Y RT +PN+ L T ++DLY+KC +VEVA+ VFD+ ++N+ WNA+I+G +HG
Sbjct: 255 YVRRTRPRPNVYLCTGIVDLYAKCGRVEVAREVFDACPEKNVFTWNALIVGLAMHGHGTV 314
Query: 304 GIKLFT-ALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFA 362
+ F LV G PD TF+GV+ C A L+ R+ F +M + +
Sbjct: 315 ALDYFDRMLVEG------FRPDGTTFLGVLIGCSHAGLVDTARRIFYEMQHNHGVPRELK 368
Query: 363 HYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQG-AVAMVERLA 421
HY CMA+L A L +EA E++ MP M ++ +W +L+ CR G V E A
Sbjct: 369 HYGCMADLLGRAGLIDEAMEMISSMP-----MEADTYVWGGILAGCRMHGNNVEFAEVAA 423
Query: 422 KSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLKEVVEKL 481
+ ++++P D Y + +YA AG+WEDVARVR R M M G R V + +L
Sbjct: 424 RRLLELNPDDGGVYSAMAGIYADAGRWEDVARVR-----RSMDEMVGMRNVGRSSIAMEL 478
Query: 482 KVG 484
K G
Sbjct: 479 KDG 481
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 45/180 (25%), Positives = 76/180 (42%), Gaps = 31/180 (17%)
Query: 240 SVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHG 299
S+H V +L P + ALI LY++ + A+RVFD M ++V NA++ G+ G
Sbjct: 119 SLHAVAVTRNLLPFPHVSNALISLYARSALPDSARRVFDGMRAPDVVSHNALVHGYVKAG 178
Query: 300 KPEEGIKLFTALVN------GTVAGG--------------------SISPDEITFIGVIC 333
+ +++F + GTV G PD++ V+
Sbjct: 179 RLGLAVRVFEGMPERDAVSWGTVVAGCAKAGRLEKAVRLFDRMRREGYRPDDVALAAVLS 238
Query: 334 ACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWC--MANLYAGAELTEEAEEILRKMPEDN 391
C + L +G++ + + + +PN Y C + +LYA E A E+ PE N
Sbjct: 239 CCAQLGALDKGQE-VHEYVRRTRPRPNV--YLCTGIVDLYAKCGRVEVAREVFDACPEKN 295
Score = 39.7 bits (91), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 38/164 (23%), Positives = 68/164 (41%), Gaps = 8/164 (4%)
Query: 43 VFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGC 102
VF F NA+I + + ++ +M+ GF P+ TF+ + C+ G
Sbjct: 287 VFDACPEKNVFTWNALIVGLAMHGHGTVALDYFDRMLVEGFRPDGTTFLGVLIGCSHAGL 346
Query: 103 VERG-GMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMS-PRDLISWNSIV 160
V+ + + + +GV EL + ++ G G +D A M M D W I+
Sbjct: 347 VDTARRIFYEMQHNHGVPRELKHYGCMADLLGRAGLIDEAMEMISSMPMEADTYVWGGIL 406
Query: 161 SGHVRSGD-----MSAAHELFDIMPERNVVSWNIMISGYSKSGN 199
+G G+ AA L ++ P+ V ++ M Y+ +G
Sbjct: 407 AGCRMHGNNVEFAEVAARRLLELNPDDGGV-YSAMAGIYADAGR 449
>gi|147856499|emb|CAN78640.1| hypothetical protein VITISV_031739 [Vitis vinifera]
Length = 954
Score = 240 bits (612), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 127/405 (31%), Positives = 222/405 (54%), Gaps = 19/405 (4%)
Query: 104 ERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGH 163
+ G + HG +K G + L V NSLI +YG G ++ AR +F+++ ++++SWN+++S +
Sbjct: 288 DEGKVIHGYVVKGGFENYLFVKNSLICLYGKHGNVNAARILFLEIKTKNIVSWNALISSY 347
Query: 164 VRSGDMSAAHELF------DIMP--ERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGF 215
G A +F D P NVVSW+ +I G++ G +L+LFR M +
Sbjct: 348 ADLGWCDEAFAIFLQLEKTDEYPMVRPNVVSWSAVIGGFASKGQGEEALELFRRMQLAKV 407
Query: 216 RGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQR 275
+ N T+ASVL+ C A + GR +HG+ VR+ + NI++ LI++Y+K +
Sbjct: 408 KANSVTIASVLSVCAELAALHLGREIHGHVVRSLMDGNILVGNGLINMYTKSGSFKEGNL 467
Query: 276 VFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICAC 335
VF+ + +++L+ WN M+ G+ IHG E I+ F ++ PD +TF+ V+ AC
Sbjct: 468 VFEKIENKDLISWNTMVAGYGIHGLGENAIRTFDQMIK-----DGFEPDGVTFVAVLSAC 522
Query: 336 VRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMS 395
A L+ EGR+ F +MI ++++P HY CM +L A L +EA ++++ MP + +
Sbjct: 523 SHAGLVAEGRELFDKMIKEFRVEPQMEHYACMVDLLGRAGLLQEASKVVKSMPVEPN--- 579
Query: 396 FESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVR 455
+ +W +LL+ CR + E A +++ + Y L N+YA +G+WED A+VR
Sbjct: 580 --ACVWGALLNSCRMHKNTEVAEETASQIFNLNSEIAGSYMLLSNIYAASGRWEDSAKVR 637
Query: 456 ELMKKRRMGRMPGCRLVDLKEVVEKLKVGHFWRGGMKEEVNKMME 500
K + + + PG + +K+ V G+ + EEV ++++
Sbjct: 638 ISAKTKGLKKTPGQSWIQVKKKVYMFSAGNTQHAEL-EEVYRILK 681
Score = 140 bits (354), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 102/364 (28%), Positives = 176/364 (48%), Gaps = 14/364 (3%)
Query: 6 QIQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFK-----CINNPGTFCVNAVIK 60
QI + +I +G ++F ++ A FG VF+ C +N N++++
Sbjct: 52 QIHSQIIVTG-SHRSAFLAARVVSVYAGFGLVSDAQRVFEVSPIECFSN--LLLWNSILR 108
Query: 61 AYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDF 120
A ++ + Y +M K G + +TF + +CA G + HG ++ G +
Sbjct: 109 ANVAHGYCEEALEIYCRMRKLGVSADGFTFPLVIRACALMGSRKLCRSVHGHVVEMGFQW 168
Query: 121 ELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMP 180
L V N L+ MYG G MD AR +F +M+ R +SWN++VSG+ + D A E+F +M
Sbjct: 169 NLHVGNELMGMYGKIGRMDDARKVFERMAVRSCVSWNTMVSGYALNYDCHGASEMFRMMG 228
Query: 181 ----ERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFN 236
E N+V+W ++S +++ G +++LF M G + +A VL+ A F+
Sbjct: 229 SAGLEPNLVTWTSLLSSHARCGQHVETMELFGRMRMRGIGATAEALAVVLSVSVDLAAFD 288
Query: 237 EGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHC 296
EG+ +HGY V+ + + + +LI LY K V A+ +F + +N+V WNA+I +
Sbjct: 289 EGKVIHGYVVKGGFENYLFVKNSLICLYGKHGNVNAARILFLEIKTKNIVSWNALISSYA 348
Query: 297 IHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYK 356
G +E +F L T + P+ +++ VI E + FR+M K
Sbjct: 349 DLGWCDEAFAIFLQL-EKTDEYPMVRPNVVSWSAVIGGFASKGQGEEALELFRRM-QLAK 406
Query: 357 IKPN 360
+K N
Sbjct: 407 VKAN 410
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 65/286 (22%), Positives = 118/286 (41%), Gaps = 41/286 (14%)
Query: 27 LLKHSADFGSPDYTVLVFKCINN--------PGTFCVNAVIKAYSNSCVPDQGVVFYLQM 78
L+ AD G D +F + P +AVI +++ ++ + + +M
Sbjct: 343 LISSYADLGWCDEAFAIFLQLEKTDEYPMVRPNVVSWSAVIGGFASKGQGEEALELFRRM 402
Query: 79 IKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAM 138
NS T S+ CA+ + G HG +++ +D + V N LINMY G+
Sbjct: 403 QLAKVKANSVTIASVLSVCAELAALHLGREIHGHVVRSLMDGNILVGNGLINMYTKSGSF 462
Query: 139 DCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSG 198
+F ++ +DLISWN+ M++GY G
Sbjct: 463 KEGNLVFEKIENKDLISWNT-------------------------------MVAGYGIHG 491
Query: 199 NPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRT-SLKPNIILD 257
+++ F +M+K GF + T +VL+AC + EGR + ++ ++P +
Sbjct: 492 LGENAIRTFDQMIKDGFEPDGVTFVAVLSACSHAGLVAEGRELFDKMIKEFRVEPQMEHY 551
Query: 258 TALIDLYSKCQKVEVAQRVFDSM-ADRNLVCWNAMILGHCIHGKPE 302
++DL + ++ A +V SM + N W A++ +H E
Sbjct: 552 ACMVDLLGRAGLLQEASKVVKSMPVEPNACVWGALLNSCRMHKNTE 597
>gi|356507694|ref|XP_003522599.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g15300-like [Glycine max]
Length = 535
Score = 240 bits (612), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 152/522 (29%), Positives = 251/522 (48%), Gaps = 55/522 (10%)
Query: 1 MKQLLQIQAHLITSGLFFNNSFWTINLLKHSA--DFGSPDYTVLVFKCINNPGTFCVNAV 58
M +L Q+QA + +GL + F T L+ SA G+ + +F + +F N +
Sbjct: 18 MLELKQVQAIITKAGLHSHLPF-TAKLIFFSALSPMGNLSHAHSLFLQTSMHNSFICNTM 76
Query: 59 IKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTG-------------CVER 105
I+A++NS P Q + Y M + + +T+ + +C++ + +
Sbjct: 77 IRAFANSSYPLQALYIYNHMHTTNVVSDHFTYNFVLKACSRAHKFAQEFVKCDEFIIISK 136
Query: 106 GGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGH-- 163
GG H LK G+D + + NSL+ MY G + A+++F ++S R L+SWN ++S +
Sbjct: 137 GGEVHCTVLKLGLDQDPSIQNSLLCMYSQCGLVHVAQHLFDEISNRSLVSWNIMISAYDR 196
Query: 164 -----------------------------VRSGDMSAAHELFDIMPERNVVSWNIMISGY 194
+R GD+ A +F IMP+R+ VSWN +I+G
Sbjct: 197 VNDSKSADYLLESMPHKNVVSWNTVIGRYIRLGDIEGARRVFQIMPQRDAVSWNSLIAGC 256
Query: 195 SKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNI 254
+ ++ LF EM + R + T+ SVL AC + G +H K
Sbjct: 257 VSVKDYEGAMGLFSEMQNAEVRPTEVTLISVLGACAETGALEMGSKIHESLKACGHKIEG 316
Query: 255 ILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNG 314
L AL+++YSKC K+ A VF+ M + L CWNAMI+G +HG EE ++LF+ + +G
Sbjct: 317 YLGNALLNMYSKCGKLNSAWEVFNGMRIKTLSCWNAMIVGLAVHGYCEEALQLFSEMESG 376
Query: 315 TVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGA 374
++ P+ +TF+GV+ AC L+ + R F M YKI P+ HY C+ +L +
Sbjct: 377 L---DTVRPNRVTFLGVLIACSHKGLVDKARWNFDHMAKQYKILPDIKHYGCIVDLLSRF 433
Query: 375 ELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSR 434
L EEA ++++ P N +I+W +LL CR QG V + + + +
Sbjct: 434 GLLEEAHQMIKTAPLQNS-----AILWRTLLGACRTQGNVELAKVSFQQLAKLGRLTDGD 488
Query: 435 YQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLKE 476
Y L N+YA A +W++V RVR M + + +D+ E
Sbjct: 489 YVLLSNIYAEAERWDEVERVRSEMIGLHVPKQVAYSQIDMTE 530
>gi|224079221|ref|XP_002305798.1| predicted protein [Populus trichocarpa]
gi|222848762|gb|EEE86309.1| predicted protein [Populus trichocarpa]
Length = 584
Score = 240 bits (612), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 150/510 (29%), Positives = 257/510 (50%), Gaps = 49/510 (9%)
Query: 1 MKQLLQIQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIK 60
+K L Q+ AH+I SG + + F LL + GS YT +F + NP +F ++I+
Sbjct: 25 LKLLHQVHAHVIVSG-YGCSRFLLTKLLNLACAAGSISYTRQIFLIVPNPDSFLFTSLIR 83
Query: 61 AYSN-SCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVD 119
+ S + FY +M+ + P++YTF S+ SCA + G + HG L NG
Sbjct: 84 STSKFHNFSVYSLYFYTRMVLSNVAPSNYTFTSVIKSCADLVALRHGRIIHGHVLVNGFG 143
Query: 120 FELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIM 179
++ V +L++ YG + G + A ++FD M
Sbjct: 144 SDVYVQTALMSFYG-------------------------------KCGVLCNARKVFDKM 172
Query: 180 PERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGR 239
+R+VV+WN MISGY ++G +++LF M + G N T SVL+AC F G
Sbjct: 173 RDRSVVTWNSMISGYEQNGFAKEAIRLFDRMKEIGVEPNSATFVSVLSACAHLGAFILGC 232
Query: 240 SVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHG 299
VH Y V L N++L T+LI++Y++C V A+ VFDSM +RN+V W AMI G+ +G
Sbjct: 233 WVHEYAVGNGLDLNVVLGTSLINMYTRCGNVSKAREVFDSMKERNVVAWTAMISGYGTNG 292
Query: 300 KPEEGIKLFTAL-VNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIK 358
+ ++LF + NG + P+ ITF+ V+ AC A L+ EGR+ F M + Y++
Sbjct: 293 YGSQAVELFHEMRRNGLL------PNSITFVAVLSACAHAGLVNEGRRVFESMREEYRLV 346
Query: 359 PNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVE 418
P H+ C+ ++ A L +EA ++++ E+ +W ++L C+ +
Sbjct: 347 PEVEHHVCLVDMLGRAGLLDEAYNFIKEIHEEP-----APAIWTAMLGACKMHKNFGLGA 401
Query: 419 RLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLKEVV 478
++A+ + +P + + Y L N+YA+AG+ + V VR+ M ++ + + G +DL
Sbjct: 402 QVAEHRLASEPGNPAHYVILSNIYALAGRMDQVEMVRDNMIRKCLKKQVGYSTIDLDRKT 461
Query: 479 EKLKVG---HFWRGGMKEEVNKMM-ECRQS 504
+G H + ++++M +CR++
Sbjct: 462 YLFSMGDKSHTETNEIYHYLDQLMRKCREA 491
>gi|449470118|ref|XP_004152765.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g25360-like [Cucumis sativus]
Length = 797
Score = 240 bits (612), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 139/432 (32%), Positives = 223/432 (51%), Gaps = 14/432 (3%)
Query: 56 NAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALK 115
NA+I Y + + + +M G + T+ ++ +CA G + G H LK
Sbjct: 258 NAMISGYVHCGCFQEALTLCRKMRFLGIQFDDITYTTIISACANVGSFQMGKQMHAYILK 317
Query: 116 NGVD----FELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSA 171
N ++ F L V N+LI +Y +D AR +F M R++I+WN+I+SG+V +G M
Sbjct: 318 NELNPNHSFCLSVSNALITLYCKNNKVDEARKIFYAMPVRNIITWNAILSGYVNAGRMEE 377
Query: 172 AHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGR 231
A F+ MP +N+++ +MISG +++G LKLF++M GF D A LTAC
Sbjct: 378 AKSFFEEMPVKNLLTLTVMISGLAQNGFGDEGLKLFKQMRLDGFEPCDFAFAGALTACSV 437
Query: 232 SARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAM 291
GR +H V + ++ + A+I +Y+KC VE A+ VF +M +LV WN+M
Sbjct: 438 LGALENGRQLHAQLVHLGYESSLSVGNAMISMYAKCGVVEAAESVFVTMPSVDLVSWNSM 497
Query: 292 ILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQM 351
I HG + I+LF ++ + PD ITF+ V+ AC A L+ +GR YF M
Sbjct: 498 IAALGQHGHGVKAIELFDQMLK-----EGVFPDRITFLTVLTACSHAGLVEKGRHYFNSM 552
Query: 352 IDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQ 411
++ Y I P HY M +L+ A + A ++ MP + +W +LL+ CR
Sbjct: 553 LESYGITPCEDHYARMVDLFCRAGMFSYARIVIDSMPSKPG-----APVWEALLAGCRIH 607
Query: 412 GAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRL 471
G + + A+ + PQ+ Y L N+YA G+W DVA+VR+LM+ + + + P C
Sbjct: 608 GNMDLGIEAAEQLFKLMPQNDGTYVLLSNIYADVGRWNDVAKVRKLMRDQAVRKEPACSW 667
Query: 472 VDLKEVVEKLKV 483
++++ V V
Sbjct: 668 IEVENKVHVFMV 679
Score = 154 bits (390), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 107/393 (27%), Positives = 188/393 (47%), Gaps = 51/393 (12%)
Query: 56 NAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAK-TGCVERGGMCHGLAL 114
NA+I Y+++ + + M ++ F P+ +TF S+ + G ++ G H +
Sbjct: 116 NAMITGYAHNGDGHSALELFRAMRRDDFRPDDFTFTSVLSALVLFVGNEQQCGQMHCAVV 175
Query: 115 KNGVD-FELPVMNSLINMY---------GCFGAMDCARNMFVQMSPRDLISWNSIVSGHV 164
K G+ V+N+L+++Y C AM AR +F +M RD ++W ++++G+V
Sbjct: 176 KTGMGCVSSSVLNALLSVYVKRASELGIPC-SAMVSARKLFDEMPKRDELTWTTMITGYV 234
Query: 165 RSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMAS 224
R+ D++ A E+F+ M E +WN MISGY G +L L R+M G + +D T +
Sbjct: 235 RNDDLNGAREVFEAMVENLGAAWNAMISGYVHCGCFQEALTLCRKMRFLGIQFDDITYTT 294
Query: 225 VLTACGRSARFNEGRSVHGYTVRTSLKPN----IILDTALIDLYSKCQKVEVAQRVFDSM 280
+++AC F G+ +H Y ++ L PN + + ALI LY K KV+ A+++F +M
Sbjct: 295 IISACANVGSFQMGKQMHAYILKNELNPNHSFCLSVSNALITLYCKNNKVDEARKIFYAM 354
Query: 281 ADRNLVCWNAMILGHCIHGKPEEGIKLF-----------TALVNGTVAGG---------- 319
RN++ WNA++ G+ G+ EE F T +++G G
Sbjct: 355 PVRNIITWNAILSGYVNAGRMEEAKSFFEEMPVKNLLTLTVMISGLAQNGFGDEGLKLFK 414
Query: 320 -----SISPDEITFIGVICACVRAELLTEGRKYFRQMIDF-YKIKPNFAHYWCMANLYAG 373
P + F G + AC L GR+ Q++ Y+ + + M ++YA
Sbjct: 415 QMRLDGFEPCDFAFAGALTACSVLGALENGRQLHAQLVHLGYESSLSVGN--AMISMYAK 472
Query: 374 AELTEEAEEILRKMPEDNDNMSFESIMWVSLLS 406
+ E AE + MP S + + W S+++
Sbjct: 473 CGVVEAAESVFVTMP------SVDLVSWNSMIA 499
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 65/254 (25%), Positives = 110/254 (43%), Gaps = 33/254 (12%)
Query: 55 VNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLAL 114
+ +I + + D+G+ + QM +GF P + F +C+ G +E G H +
Sbjct: 393 LTVMISGLAQNGFGDEGLKLFKQMRLDGFEPCDFAFAGALTACSVLGALENGRQLHAQLV 452
Query: 115 KNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHE 174
G + L V N++I+MY G ++ A ++FV M DL+SWNS+++ + G A E
Sbjct: 453 HLGYESSLSVGNAMISMYAKCGVVEAAESVFVTMPSVDLVSWNSMIAALGQHGHGVKAIE 512
Query: 175 LFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSAR 234
LFD +M+K G + T +VLTAC +
Sbjct: 513 LFD-------------------------------QMLKEGVFPDRITFLTVLTACSHAGL 541
Query: 235 FNEGRSVHGYTVRT-SLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADR-NLVCWNAMI 292
+GR + + + P ++DL+ + A+ V DSM + W A++
Sbjct: 542 VEKGRHYFNSMLESYGITPCEDHYARMVDLFCRAGMFSYARIVIDSMPSKPGAPVWEALL 601
Query: 293 LGHCIHGKPEEGIK 306
G IHG + GI+
Sbjct: 602 AGCRIHGNMDLGIE 615
Score = 89.4 bits (220), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 93/374 (24%), Positives = 162/374 (43%), Gaps = 77/374 (20%)
Query: 110 HGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDM 169
H + +G +N L+ MY + AR +F ++ D I+ ++++ + G++
Sbjct: 36 HAHMIASGFKPRGHFLNRLLEMYCKSSNVVYARQLFEEIPNPDAIARTTLITAYCALGNL 95
Query: 170 SAAHELFDIMP--ERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLT 227
E+F+ P R+ V +N MI+GY+ +G+ +L+LFR M + FR +D T SVL+
Sbjct: 96 ELGREIFNGTPLYMRDSVFYNAMITGYAHNGDGHSALELFRAMRRDDFRPDDFTFTSVLS 155
Query: 228 A----------CGRSARFNEGRSVHGYTVRTSLK--PNIILDTALIDLYSK--------C 267
A CG+ +H V+T + + +L+ AL+ +Y K C
Sbjct: 156 ALVLFVGNEQQCGQ---------MHCAVVKTGMGCVSSSVLN-ALLSVYVKRASELGIPC 205
Query: 268 QKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALV-------NGTVAGG- 319
+ A+++FD M R+ + W MI G+ + ++F A+V N ++G
Sbjct: 206 SAMVSARKLFDEMPKRDELTWTTMITGYVRNDDLNGAREVFEAMVENLGAAWNAMISGYV 265
Query: 320 ------------------SISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNF 361
I D+IT+ +I AC G++ ++ ++ PN
Sbjct: 266 HCGCFQEALTLCRKMRFLGIQFDDITYTTIISACANVGSFQMGKQMHAYILK-NELNPN- 323
Query: 362 AHYWCMA------NLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVA 415
H +C++ LY +EA +I MP N I W ++LS + A
Sbjct: 324 -HSFCLSVSNALITLYCKNNKVDEARKIFYAMPVRN------IITWNAILS--GYVNAGR 374
Query: 416 MVERLAKSFVDMDP 429
M E AKSF + P
Sbjct: 375 MEE--AKSFFEEMP 386
Score = 43.1 bits (100), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 29/132 (21%), Positives = 53/132 (40%), Gaps = 28/132 (21%)
Query: 233 ARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMI 292
A F+ R+VH + + + KP L+++Y K V A+++F+ + + + + +I
Sbjct: 27 ASFSLARAVHAHMIASGFKPRGHFLNRLLEMYCKSSNVVYARQLFEEIPNPDAIARTTLI 86
Query: 293 LGHCIHGKPEEGIKLF-------------TALVNGTVAGG---------------SISPD 324
+C G E G ++F A++ G G PD
Sbjct: 87 TAYCALGNLELGREIFNGTPLYMRDSVFYNAMITGYAHNGDGHSALELFRAMRRDDFRPD 146
Query: 325 EITFIGVICACV 336
+ TF V+ A V
Sbjct: 147 DFTFTSVLSALV 158
>gi|356523586|ref|XP_003530418.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g29230-like [Glycine max]
Length = 604
Score = 240 bits (612), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 155/510 (30%), Positives = 239/510 (46%), Gaps = 76/510 (14%)
Query: 40 TVLVFKCINNPGTFCVNAVIKAYS-NSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCA 98
V VF + +P N++I+A++ N+ P + QM KNG P+++T+ L +C
Sbjct: 72 AVNVFNHVPHPNVHLYNSIIRAHAHNTSHPSLPFNAFFQMQKNGLFPDNFTYPFLLKACT 131
Query: 99 KTGCVERGGMCHGLALKNGVDFELPVMNSLINMY------GCFGAM-------------- 138
+ M H K G ++ V NSLI+ Y G GAM
Sbjct: 132 GPSSLPLVRMIHAHVEKFGFYGDIFVPNSLIDSYSRCGSAGLDGAMSLFLAMKERDVVTW 191
Query: 139 -------------DCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVV 185
+ A +F +M RD++SWN+++ G+ ++G+M A ELF+ MP+RN+V
Sbjct: 192 NSMIGGLVRCGELEGACKLFDEMPERDMVSWNTMLDGYAKAGEMDRAFELFERMPQRNIV 251
Query: 186 SWNIMISGYSKSGN--------PGCSLK-----------------------LFREMMKSG 214
SW+ M+ GYSK G+ C K L+ +M ++G
Sbjct: 252 SWSTMVCGYSKGGDMDMARVLFDRCPAKNVVLWTTIIAGYAEKGFVREATELYGKMEEAG 311
Query: 215 FRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQ 274
R +D + S+L AC S G+ +H R + + A ID+Y+KC ++ A
Sbjct: 312 LRPDDGFLISILAACAESGMLGLGKRIHASMRRWRFRCGTKVLNAFIDMYAKCGCLDAAF 371
Query: 275 RVFDS-MADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVIC 333
VF MA +++V WN+MI G +HG E+ ++LF+ +V PD TF+G++C
Sbjct: 372 DVFSGMMAKKDVVSWNSMIQGFAMHGHGEKALELFSRMVP-----EGFEPDTYTFVGLLC 426
Query: 334 ACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDN 393
AC A L+ EGRKYF M Y I P HY CM +L +EA +LR MP
Sbjct: 427 ACTHAGLVNEGRKYFYSMEKVYGIVPQVEHYGCMMDLLGRGGHLKEAFTLLRSMP----- 481
Query: 394 MSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVAR 453
M +I+ +LL+ CR V + + ++P D Y L N+YA AG W +VA
Sbjct: 482 MEPNAIILGTLLNACRMHNDVDFARAVCEQLFKVEPTDPGNYSLLSNIYAQAGDWMNVAN 541
Query: 454 VRELMKKRRMGRMPGCRLVDLKEVVEKLKV 483
VR M + G ++++E V + V
Sbjct: 542 VRLQMMNTGGQKPSGASSIEVEEEVHEFTV 571
Score = 65.5 bits (158), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 42/164 (25%), Positives = 81/164 (49%), Gaps = 3/164 (1%)
Query: 151 RDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYS-KSGNPGCSLKLFRE 209
+DL +++ +++A +F+ +P NV +N +I ++ + +P F +
Sbjct: 51 QDLFVAPKLIAAFSLCRHLASAVNVFNHVPHPNVHLYNSIIRAHAHNTSHPSLPFNAFFQ 110
Query: 210 MMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQK 269
M K+G ++ T +L AC + R +H + + +I + +LID YS+C
Sbjct: 111 MQKNGLFPDNFTYPFLLKACTGPSSLPLVRMIHAHVEKFGFYGDIFVPNSLIDSYSRCGS 170
Query: 270 --VEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTAL 311
++ A +F +M +R++V WN+MI G G+ E KLF +
Sbjct: 171 AGLDGAMSLFLAMKERDVVTWNSMIGGLVRCGELEGACKLFDEM 214
>gi|115457318|ref|NP_001052259.1| Os04g0218100 [Oryza sativa Japonica Group]
gi|113563830|dbj|BAF14173.1| Os04g0218100, partial [Oryza sativa Japonica Group]
Length = 890
Score = 240 bits (612), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 137/435 (31%), Positives = 220/435 (50%), Gaps = 37/435 (8%)
Query: 56 NAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALK 115
AVI YS + + + QMI +G +PN T +S+ +CA G +G H +LK
Sbjct: 370 TAVIAGYSQRGCSHEALNLFRQMIFSGSLPNCVTIISVLSACASLGAFSQGTEIHAYSLK 429
Query: 116 NGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHEL 175
N L+ + FG D DL+ +N+++ + + AA +
Sbjct: 430 N----------CLLTLDNDFGGED-----------EDLMVYNALIDMYSKCRSFKAARSI 468
Query: 176 FDIMP--ERNVVSWNIMISGYSKSGNPGCSLKLFREMMKS--GFRGNDKTMASVLTACGR 231
FD +P ERNVV+W +MI G+++ G+ +LKLF EM+ G N T++ +L AC
Sbjct: 469 FDDIPLEERNVVTWTVMIGGHAQYGDSNDALKLFVEMISEPYGVAPNAYTISCILMACAH 528
Query: 232 SARFNEGRSVHGYTVRTSLKPN--IILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWN 289
A G+ +H Y +R + + LID+YSKC V+ A+ VFDSM+ ++ + W
Sbjct: 529 LAAIRIGKQIHAYVLRHHRYESSAYFVANCLIDMYSKCGDVDTARHVFDSMSQKSAISWT 588
Query: 290 AMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFR 349
+M+ G+ +HG+ E + +F + PD+ITF+ V+ AC ++ +G YF
Sbjct: 589 SMMTGYGMHGRGSEALDIFDKMRKA-----GFVPDDITFLVVLYACSHCGMVDQGLSYFD 643
Query: 350 QMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCR 409
M Y + P HY C +L A + ++A ++ MP M +++WV+LLS CR
Sbjct: 644 SMSADYGLTPRAEHYACAIDLLARSGRLDKAWRTVKDMP-----MEPTAVVWVALLSACR 698
Query: 410 FQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGC 469
V + E V+M+ ++ Y + N+YA AG+W+DVAR+R LMKK + + PGC
Sbjct: 699 VHSNVELAEHALNKLVEMNAENDGSYTLISNIYATAGRWKDVARIRHLMKKSGIKKRPGC 758
Query: 470 RLVDLKEVVEKLKVG 484
V ++ VG
Sbjct: 759 SWVQGQKGTASFFVG 773
Score = 160 bits (406), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 107/378 (28%), Positives = 200/378 (52%), Gaps = 39/378 (10%)
Query: 89 TFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQM 148
+ V++ +C V + HG A++NG ++ V N+LI+ Y G M+ A +F M
Sbjct: 267 SIVNILPACGSLKAVPQTKEVHGNAIRNGTFPDVFVGNALIDAYAKCGLMENAVKVFNMM 326
Query: 149 SPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERN----VVSWNIMISGYSKSGNPGCSL 204
+D++SWN++V+G+ +SG+ AA ELF M + N VV+W +I+GYS+ G +L
Sbjct: 327 EFKDVVSWNAMVAGYSQSGNFEAAFELFKNMRKENIPLDVVTWTAVIAGYSQRGCSHEAL 386
Query: 205 KLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSL----------KPNI 254
LFR+M+ SG N T+ SVL+AC F++G +H Y+++ L ++
Sbjct: 387 NLFRQMIFSGSLPNCVTIISVLSACASLGAFSQGTEIHAYSLKNCLLTLDNDFGGEDEDL 446
Query: 255 ILDTALIDLYSKCQKVEVAQRVFDS--MADRNLVCWNAMILGHCIHGKPEEGIKLFTALV 312
++ ALID+YSKC+ + A+ +FD + +RN+V W MI GH +G + +KLF ++
Sbjct: 447 MVYNALIDMYSKCRSFKAARSIFDDIPLEERNVVTWTVMIGGHAQYGDSNDALKLFVEMI 506
Query: 313 NGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYW--CMANL 370
+ ++P+ T ++ AC + G++ ++ ++ + + A++ C+ ++
Sbjct: 507 SEPYG---VAPNAYTISCILMACAHLAAIRIGKQIHAYVLRHHRYESS-AYFVANCLIDM 562
Query: 371 YAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQG----AVAMVERLAKS-FV 425
Y+ + A + M + + +I W S+++ G A+ + +++ K+ FV
Sbjct: 563 YSKCGDVDTARHVFDSMSQKS------AISWTSMMTGYGMHGRGSEALDIFDKMRKAGFV 616
Query: 426 DMDPQDFSRYQFLLNVYA 443
P D + FL+ +YA
Sbjct: 617 ---PDDIT---FLVVLYA 628
Score = 118 bits (295), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 87/335 (25%), Positives = 146/335 (43%), Gaps = 46/335 (13%)
Query: 35 GSPDYTVLVFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLF 94
G+ DY +LV + + N +I+ + D + +M++ G P+ +T +
Sbjct: 103 GATDYALLVLERVTPSPAVWWNLLIREHIKQGRLDSAINVSCRMLRAGTRPDHFTLPHVL 162
Query: 95 GSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLI 154
+C + G HGL NG + + + N+L+ MY
Sbjct: 163 KACGELPSYRCGSAFHGLICCNGFESNVFICNALVAMYS--------------------- 201
Query: 155 SWNSIVSGHVRSGDMSAAHELFDIMPER---NVVSWNIMISGYSKSGNPGCSLKLFREMM 211
R G + A +FD + +R +V+SWN ++S + KS N +L LF +M
Sbjct: 202 ----------RCGSLEEASMIFDEITQRGIDDVISWNSIVSAHVKSSNAWTALDLFSKMT 251
Query: 212 ------KSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYS 265
+ R + ++ ++L ACG + + VHG +R P++ + ALID Y+
Sbjct: 252 LIVHEKPTNERSDIISIVNILPACGSLKAVPQTKEVHGNAIRNGTFPDVFVGNALIDAYA 311
Query: 266 KCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDE 325
KC +E A +VF+ M +++V WNAM+ G+ G E +LF + +I D
Sbjct: 312 KCGLMENAVKVFNMMEFKDVVSWNAMVAGYSQSGNFEAAFELFKNMRK-----ENIPLDV 366
Query: 326 ITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPN 360
+T+ VI + E FRQMI F PN
Sbjct: 367 VTWTAVIAGYSQRGCSHEALNLFRQMI-FSGSLPN 400
Score = 73.6 bits (179), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 64/298 (21%), Positives = 125/298 (41%), Gaps = 48/298 (16%)
Query: 148 MSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLF 207
+SPR L + +V+ ++ G A + + + V WN++I + K G ++ +
Sbjct: 86 ISPRSLGT--GVVASYLACGATDYALLVLERVTPSPAVWWNLLIREHIKQGRLDSAINVS 143
Query: 208 REMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKC 267
M+++G R + T+ VL ACG + G + HG + N+ + AL+ +YS+C
Sbjct: 144 CRMLRAGTRPDHFTLPHVLKACGELPSYRCGSAFHGLICCNGFESNVFICNALVAMYSRC 203
Query: 268 QKVEVAQRVFDSMADR---NLVCWNAMILGHC------------------IHGKPEEGIK 306
+E A +FD + R +++ WN+++ H +H KP
Sbjct: 204 GSLEEASMIFDEITQRGIDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERS 263
Query: 307 LFTALVNGTVAGGSIS------------------PDEITFIGVICACVRAELLTEGRKYF 348
++VN A GS+ PD +I A + L+ K F
Sbjct: 264 DIISIVNILPACGSLKAVPQTKEVHGNAIRNGTFPDVFVGNALIDAYAKCGLMENAVKVF 323
Query: 349 RQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLS 406
M++F + + M Y+ + E A E+ + M + +N+ + + W ++++
Sbjct: 324 -NMMEFKDV----VSWNAMVAGYSQSGNFEAAFELFKNMRK--ENIPLDVVTWTAVIA 374
>gi|359482590|ref|XP_002284545.2| PREDICTED: pentatricopeptide repeat-containing protein
At2g27610-like [Vitis vinifera]
Length = 648
Score = 239 bits (611), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 145/481 (30%), Positives = 237/481 (49%), Gaps = 47/481 (9%)
Query: 6 QIQAHLITSGLFFNNSFWT--INLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAYS 63
Q+ A + +G F+ T +NL S L+F I F N +I+ Y+
Sbjct: 96 QLHAQVCLAGFGFDTVIATKLVNLYCVCDSLSS---ARLLFDRIPKHNIFLWNVLIRGYA 152
Query: 64 NSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELP 123
+ + V Y QM G +P+++TF + +CA +E G H ++ G + ++
Sbjct: 153 WNGPYEAAVQLYYQMFDYGLVPDNFTFPFVLKACAALSAIEHGREIHEHVVQTGWEKDVF 212
Query: 124 VMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERN 183
V +LI+MY + G + +A E+FD + R+
Sbjct: 213 VGAALIDMYA-------------------------------KCGCVGSAREVFDKILVRD 241
Query: 184 VVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHG 243
V WN M++ YS++G+P L L EM+ +G R + T+ + ++A +A +GR +HG
Sbjct: 242 AVLWNSMLAAYSQNGHPDACLSLCSEMVLTGLRPTEATLVTAISASADNAALPQGRELHG 301
Query: 244 YTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEE 303
+ R + + + TAL+D+Y+KC V VA+ +F+ + + +V WNAMI G+ +HG E
Sbjct: 302 LSWRQEFESHDKVKTALVDMYAKCGSVRVARNLFERLGVKRVVSWNAMITGYAMHGHATE 361
Query: 304 GIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAH 363
+ LF + VA PD ITF+GV+ AC LL EG +F MI YKI P H
Sbjct: 362 ALDLFEEM--NRVA----KPDHITFVGVLSACSHGGLLEEGWMFFETMIRDYKIDPTVQH 415
Query: 364 YWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKS 423
Y CM +L + +EA ++ +M D S +W +LL+ C+ V + E +
Sbjct: 416 YTCMVDLLGHSGRLDEAYNLIMQMKVLPD-----SGVWGALLNSCKIHANVELGEIALER 470
Query: 424 FVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLKEVVEKLKV 483
++++P D Y L N+YA AG+WE VA++R+LM RR+ + C +++K V
Sbjct: 471 LIELEPDDAGNYVILSNIYAQAGKWEGVAKLRKLMTDRRLKKSIACSWIEVKNKVHAFLS 530
Query: 484 G 484
G
Sbjct: 531 G 531
Score = 62.8 bits (151), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 41/184 (22%), Positives = 81/184 (44%), Gaps = 12/184 (6%)
Query: 223 ASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMAD 282
AS+L +C G+ +H + ++ T L++LY C + A+ +FD +
Sbjct: 79 ASLLQSCIARKAIKPGKQLHAQVCLAGFGFDTVIATKLVNLYCVCDSLSSARLLFDRIPK 138
Query: 283 RNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLT 342
N+ WN +I G+ +G E ++L+ + + + PD TF V+ AC +
Sbjct: 139 HNIFLWNVLIRGYAWNGPYEAAVQLYYQMFD-----YGLVPDNFTFPFVLKACAALSAIE 193
Query: 343 EGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWV 402
GR+ ++ K F + ++YA A E+ K+ + ++++W
Sbjct: 194 HGREIHEHVVQTGWEKDVFVGA-ALIDMYAKCGCVGSAREVFDKI------LVRDAVLWN 246
Query: 403 SLLS 406
S+L+
Sbjct: 247 SMLA 250
>gi|296082950|emb|CBI22251.3| unnamed protein product [Vitis vinifera]
Length = 476
Score = 239 bits (611), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 142/442 (32%), Positives = 226/442 (51%), Gaps = 14/442 (3%)
Query: 35 GSPDYTVLVFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLF 94
G Y +F I+ P TF N +I+ YS S P Q V + QM +N P+ +TF L
Sbjct: 43 GCLHYADRLFSQIHQPNTFFYNTLIRGYSKSSSPSQSVQLFNQMRRNCVDPDGFTFTFLL 102
Query: 95 GSCAKT----GCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSP 150
++ + HG LK G F L VMN+LI++Y G A +F +M
Sbjct: 103 KGRSRMRIDLPLIVASDEIHGAVLKLGFCFHLFVMNALIHLYAARGVPAAAHQVFNEMVG 162
Query: 151 RDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREM 210
D++SW+ +V HVR+G++ A ++F MPER+VVSW +M+SGY+++ +L+LFREM
Sbjct: 163 ADVVSWSGLVVAHVRAGELELARQVFYEMPERDVVSWTVMVSGYAQAKRSREALELFREM 222
Query: 211 MKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKV 270
G R ++ M SV++AC G VH Y + L ALID+Y+KC +
Sbjct: 223 RDVGVRPDEVAMVSVISACTSLGDLETGFEVHRYIDENGFGWMVSLCNALIDMYAKCGCM 282
Query: 271 EVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIG 330
++A +VF++M ++L+ WN+MI HG E+ ++FT ++ I PD +TF+
Sbjct: 283 DLAWQVFNNMERKSLITWNSMISACANHGNAEDAFRVFTLMLY-----SGIRPDGVTFLA 337
Query: 331 VICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPED 390
++ A + +G F M Y ++ HY CM ++ A EEA +++ M
Sbjct: 338 LLTAYTHKGWVDDGYGLFESMQRDYGVEAGVEHYGCMVDMLGRAGRLEEAYKLITSM--- 394
Query: 391 NDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWED 450
+M ++W +LL+ CR G V M ER+ K +++ P + Y L ++Y AG+ +
Sbjct: 395 --SMPCNDVVWGALLAACRIYGDVEMGERVLKKLIELKPDEGGYYILLRDIYVAAGRRAE 452
Query: 451 VARVRELMKKRRMGRMPGCRLV 472
+R M + GC V
Sbjct: 453 AIELRRAMDVNGAKKTLGCSWV 474
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 65/279 (23%), Positives = 114/279 (40%), Gaps = 41/279 (14%)
Query: 166 SGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASV 225
+G + A LF + + N +N +I GYSKS +P S++LF +M ++ + T +
Sbjct: 42 NGCLHYADRLFSQIHQPNTFFYNTLIRGYSKSSSPSQSVQLFNQMRRNCVDPDGFTFTFL 101
Query: 226 LTACGRS-ARFN-----EGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDS 279
L GRS R + +HG ++ ++ + ALI LY+ A +VF+
Sbjct: 102 LK--GRSRMRIDLPLIVASDEIHGAVLKLGFCFHLFVMNALIHLYAARGVPAAAHQVFNE 159
Query: 280 MADRNLVCWNAMILGHCIHGK-----------PEEGIKLFTALVNGTVAGG--------- 319
M ++V W+ +++ H G+ PE + +T +V+G
Sbjct: 160 MVGADVVSWSGLVVAHVRAGELELARQVFYEMPERDVVSWTVMVSGYAQAKRSREALELF 219
Query: 320 ------SISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAG 373
+ PDE+ + VI AC L G + R ID + + ++YA
Sbjct: 220 REMRDVGVRPDEVAMVSVISACTSLGDLETGFEVHRY-IDENGFGWMVSLCNALIDMYAK 278
Query: 374 AELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQG 412
+ A ++ M + I W S++S C G
Sbjct: 279 CGCMDLAWQVFNNMERKS------LITWNSMISACANHG 311
>gi|356570285|ref|XP_003553320.1| PREDICTED: pentatricopeptide repeat-containing protein At3g26630,
chloroplastic-like [Glycine max]
Length = 474
Score = 239 bits (611), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 134/407 (32%), Positives = 204/407 (50%), Gaps = 15/407 (3%)
Query: 2 KQLLQIQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKA 61
KQL Q+ +I GL ++ L++ S +G Y LVF +N P F N +I+A
Sbjct: 38 KQLKQVHGKIIRYGLTYDQ-LLVRKLIQLSPSYGKMKYATLVFDQLNAPDVFTWNVMIRA 96
Query: 62 YSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFE 121
Y+ P + + M+ GF P+ +T+ + +C ++ G + H LA+K G +
Sbjct: 97 YTIGGSPKMAFLLFKAMLYQGFAPDKFTYPCVINACMAYNALDVGRVAHALAIKMGFWGD 156
Query: 122 LPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPE 181
L V N+++N+Y +D N+F +M R++ +W ++++G V G + A ELF+ MP
Sbjct: 157 LYVQNTMMNLYFKCENVDDGWNVFDKMCVRNVFAWTTVIAGFVACGKLDTARELFEQMPS 216
Query: 182 RNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSV 241
+NVVSW +I GY K P + LF M R N+ T+ S++ AC GR V
Sbjct: 217 KNVVSWTAIIDGYVKHKQPIEAFDLFERMQADNVRPNEYTLVSLVRACTEMGSLKLGRRV 276
Query: 242 HGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKP 301
H + ++ + L TALID+YSKC ++ A+ VFD M R L WN MI +HG
Sbjct: 277 HDFALKNGFELEPFLGTALIDMYSKCGNLDDARTVFDMMQMRTLATWNTMITSLGVHGYR 336
Query: 302 EEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNF 361
+E + +F + PD ITF+GV+ ACV L +KYF M D Y I P
Sbjct: 337 DEALSIFEEMEKANEV-----PDAITFVGVLSACVYMNDLELAQKYFNLMTDHYGITPIL 391
Query: 362 AHYWCMANLYAGA----EL-----TEEAEEILRKMPEDNDNMSFESI 399
HY CM ++ A E+ T EA + ++ N SF+ I
Sbjct: 392 EHYTCMVEIHTRAIKLDEIYMSGNTMEANHDVAELLHKNKLTSFDDI 438
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 37/120 (30%), Positives = 56/120 (46%), Gaps = 5/120 (4%)
Query: 226 LTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNL 285
L + + F + + VHG +R L + +L LI L K++ A VFD + ++
Sbjct: 28 LVLLKKCSNFKQLKQVHGKIIRYGLTYDQLLVRKLIQLSPSYGKMKYATLVFDQLNAPDV 87
Query: 286 VCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGR 345
WN MI + I G P+ LF A++ A PD+ T+ VI AC+ L GR
Sbjct: 88 FTWNVMIRAYTIGGSPKMAFLLFKAMLYQGFA-----PDKFTYPCVINACMAYNALDVGR 142
>gi|125570503|gb|EAZ12018.1| hypothetical protein OsJ_01900 [Oryza sativa Japonica Group]
Length = 657
Score = 239 bits (611), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 131/402 (32%), Positives = 215/402 (53%), Gaps = 12/402 (2%)
Query: 70 QGVVFYLQMIKN-GFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSL 128
Q + Y+ M+ G N V L +C++ V G H + LKNG D V +L
Sbjct: 258 QALRTYVAMVGTVGIRANEVILVGLVKACSRHSAVSEGQQLHTVILKNGFDAHAFVQATL 317
Query: 129 INMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWN 188
I+ YG +D A+ F + SWN++++ +R + A +LFD MPER+ +SW+
Sbjct: 318 IHYYGSCDFIDHAQMQFKLSDKSHVASWNALMASLLRRNLVHEARQLFDDMPERDTISWS 377
Query: 189 IMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRT 248
+ISGY +SGN +L++F M+ +G N+ T+AS L+A S + R +H Y +
Sbjct: 378 TLISGYVQSGNSNMALQIFCSMLDAGVEPNEITLASALSAVANSGTLGQARWIHDYIISR 437
Query: 249 SLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVC--WNAMILGHCIHGKPEEGIK 306
S++ L LI++Y+KC + A ++F+ + D+++ WN++I IHG ++
Sbjct: 438 SIQLTDKLSAGLINVYAKCGSIAEAVQLFNHVKDKSISVSPWNSIICNLAIHGYVNMSLE 497
Query: 307 LFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWC 366
LF+ L + T I P+ IT++GV+ AC A ++ EG++ F M Y I+P HY C
Sbjct: 498 LFSQLQSTT----HIKPNSITYLGVLNACCHAGMVAEGKRQFESMRQQYGIQPEIKHYGC 553
Query: 367 MANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVD 426
M +L A EEAE +++ MP M + + W +L+ R QG VA+ E+ A+
Sbjct: 554 MVDLLCRAGYLEEAELLIKTMP-----MKADVVAWGCILAAARTQGNVALGEKAAEELSK 608
Query: 427 MDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPG 468
+DP + L N+YA AG W +V+ VR+ ++ + R+ G
Sbjct: 609 LDPSHGASKIALSNLYADAGHWSNVSVVRKELQNENLERLTG 650
Score = 135 bits (339), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 109/458 (23%), Positives = 204/458 (44%), Gaps = 54/458 (11%)
Query: 58 VIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCA-KTGCVERGGMCHGLALKN 116
VI A S S P++ + + M+ PN T + + A G G HG+A++
Sbjct: 113 VISALSRSGHPERALAVFRDMLTEAVQPNEVTLAEVLTAMACDHGAPAPVGAAHGVAVRR 172
Query: 117 GVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELF 176
G+D + V +L++ YG + AR++F M R+ ++WN++++ +V++G ++ A E+F
Sbjct: 173 GLDGFVIVATNLVHAYGAVSQVPSARSIFELMPDRNTVTWNTMLNCYVKAGMINMAAEVF 232
Query: 177 DIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKS-GFRGNDKTMASVLTACGRSARF 235
++PER+ VSW MI GY + +L+ + M+ + G R N+ + ++ AC R +
Sbjct: 233 GVIPERDEVSWLTMIDGYMCADFLLQALRTYVAMVGTVGIRANEVILVGLVKACSRHSAV 292
Query: 236 NEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQ--------------------- 274
+EG+ +H ++ + + LI Y C ++ AQ
Sbjct: 293 SEGQQLHTVILKNGFDAHAFVQATLIHYYGSCDFIDHAQMQFKLSDKSHVASWNALMASL 352
Query: 275 ----------RVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPD 324
++FD M +R+ + W+ +I G+ G +++F ++++ V P+
Sbjct: 353 LRRNLVHEARQLFDDMPERDTISWSTLISGYVQSGNSNMALQIFCSMLDAGV-----EPN 407
Query: 325 EITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEIL 384
EIT + A + L + R + I I+ + N+YA EA ++
Sbjct: 408 EITLASALSAVANSGTLGQAR-WIHDYIISRSIQLTDKLSAGLINVYAKCGSIAEAVQLF 466
Query: 385 RKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERL---AKSFVDMDPQDFSRYQFLLNV 441
+ + + ++S W S++ G V M L +S + P + Y +LN
Sbjct: 467 NHVKDKSISVS----PWNSIICNLAIHGYVNMSLELFSQLQSTTHIKPNSIT-YLGVLNA 521
Query: 442 YAVAGQWEDVARVRELMKKRRMGRMP-----GCRLVDL 474
AG + R E M++ + G P GC +VDL
Sbjct: 522 CCHAGMVAEGKRQFESMRQ-QYGIQPEIKHYGC-MVDL 557
Score = 116 bits (291), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 114/409 (27%), Positives = 183/409 (44%), Gaps = 62/409 (15%)
Query: 78 MIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGV-DFELPVMNSLINMYGCFG 136
M P + VS S A + G H LA K+G+ L V NSL+ Y
Sbjct: 1 MTTRAGAPLAVFLVSSLKSAAAR--LSHGEQLHALAAKSGLLTSNLFVRNSLLAFYSRV- 57
Query: 137 AMDCARNMFVQMSP--RDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGY 194
A A ++F ++ P RD + N ++S R+G + A L MP+R+ VS+ +IS
Sbjct: 58 APSLAYHLFDEIPPLLRDATAQNILLSALARAGRLERAQCLLAEMPQRDAVSFTTVISAL 117
Query: 195 SKSGNPGCSLKLFREMMKSGFRGNDKTMASVLT--ACGRSARFNEGRSVHGYTVRTSLKP 252
S+SG+P +L +FR+M+ + N+ T+A VLT AC A G + HG VR L
Sbjct: 118 SRSGHPERALAVFRDMLTEAVQPNEVTLAEVLTAMACDHGAPAPVG-AAHGVAVRRGLDG 176
Query: 253 NIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGK-----------P 301
+I+ T L+ Y +V A+ +F+ M DRN V WN M+ + G P
Sbjct: 177 FVIVATNLVHAYGAVSQVPSARSIFELMPDRNTVTWNTMLNCYVKAGMINMAAEVFGVIP 236
Query: 302 E--------------------EGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELL 341
E + ++ + A+V GTV I +E+ +G++ AC R +
Sbjct: 237 ERDEVSWLTMIDGYMCADFLLQALRTYVAMV-GTVG---IRANEVILVGLVKACSRHSAV 292
Query: 342 TEGRKYFRQMIDFYKIKPNF-AHYWCMANL---YAGAELTEEAEEILRKMPEDNDNMSFE 397
+EG Q + +K F AH + A L Y + + A ++ K+ + + S+
Sbjct: 293 SEG-----QQLHTVILKNGFDAHAFVQATLIHYYGSCDFIDHA-QMQFKLSDKSHVASWN 346
Query: 398 SIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAG 446
++M SL R +V + F DM +D + L++ Y +G
Sbjct: 347 ALM----ASLLRRN----LVHEARQLFDDMPERDTISWSTLISGYVQSG 387
>gi|21741755|emb|CAD39781.1| OSJNBa0060B20.9 [Oryza sativa Japonica Group]
Length = 897
Score = 239 bits (611), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 137/435 (31%), Positives = 220/435 (50%), Gaps = 37/435 (8%)
Query: 56 NAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALK 115
AVI YS + + + QMI +G +PN T +S+ +CA G +G H +LK
Sbjct: 377 TAVIAGYSQRGCSHEALNLFRQMIFSGSLPNCVTIISVLSACASLGAFSQGTEIHAYSLK 436
Query: 116 NGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHEL 175
N L+ + FG D DL+ +N+++ + + AA +
Sbjct: 437 N----------CLLTLDNDFGGED-----------EDLMVYNALIDMYSKCRSFKAARSI 475
Query: 176 FDIMP--ERNVVSWNIMISGYSKSGNPGCSLKLFREMMKS--GFRGNDKTMASVLTACGR 231
FD +P ERNVV+W +MI G+++ G+ +LKLF EM+ G N T++ +L AC
Sbjct: 476 FDDIPLEERNVVTWTVMIGGHAQYGDSNDALKLFVEMISEPYGVAPNAYTISCILMACAH 535
Query: 232 SARFNEGRSVHGYTVRTSLKPN--IILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWN 289
A G+ +H Y +R + + LID+YSKC V+ A+ VFDSM+ ++ + W
Sbjct: 536 LAAIRIGKQIHAYVLRHHRYESSAYFVANCLIDMYSKCGDVDTARHVFDSMSQKSAISWT 595
Query: 290 AMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFR 349
+M+ G+ +HG+ E + +F + PD+ITF+ V+ AC ++ +G YF
Sbjct: 596 SMMTGYGMHGRGSEALDIFDKMRKA-----GFVPDDITFLVVLYACSHCGMVDQGLSYFD 650
Query: 350 QMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCR 409
M Y + P HY C +L A + ++A ++ MP M +++WV+LLS CR
Sbjct: 651 SMSADYGLTPRAEHYACAIDLLARSGRLDKAWRTVKDMP-----MEPTAVVWVALLSACR 705
Query: 410 FQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGC 469
V + E V+M+ ++ Y + N+YA AG+W+DVAR+R LMKK + + PGC
Sbjct: 706 VHSNVELAEHALNKLVEMNAENDGSYTLISNIYATAGRWKDVARIRHLMKKSGIKKRPGC 765
Query: 470 RLVDLKEVVEKLKVG 484
V ++ VG
Sbjct: 766 SWVQGQKGTASFFVG 780
Score = 160 bits (406), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 107/378 (28%), Positives = 200/378 (52%), Gaps = 39/378 (10%)
Query: 89 TFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQM 148
+ V++ +C V + HG A++NG ++ V N+LI+ Y G M+ A +F M
Sbjct: 274 SIVNILPACGSLKAVPQTKEVHGNAIRNGTFPDVFVGNALIDAYAKCGLMENAVKVFNMM 333
Query: 149 SPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERN----VVSWNIMISGYSKSGNPGCSL 204
+D++SWN++V+G+ +SG+ AA ELF M + N VV+W +I+GYS+ G +L
Sbjct: 334 EFKDVVSWNAMVAGYSQSGNFEAAFELFKNMRKENIPLDVVTWTAVIAGYSQRGCSHEAL 393
Query: 205 KLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSL----------KPNI 254
LFR+M+ SG N T+ SVL+AC F++G +H Y+++ L ++
Sbjct: 394 NLFRQMIFSGSLPNCVTIISVLSACASLGAFSQGTEIHAYSLKNCLLTLDNDFGGEDEDL 453
Query: 255 ILDTALIDLYSKCQKVEVAQRVFDS--MADRNLVCWNAMILGHCIHGKPEEGIKLFTALV 312
++ ALID+YSKC+ + A+ +FD + +RN+V W MI GH +G + +KLF ++
Sbjct: 454 MVYNALIDMYSKCRSFKAARSIFDDIPLEERNVVTWTVMIGGHAQYGDSNDALKLFVEMI 513
Query: 313 NGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYW--CMANL 370
+ ++P+ T ++ AC + G++ ++ ++ + + A++ C+ ++
Sbjct: 514 SEPYG---VAPNAYTISCILMACAHLAAIRIGKQIHAYVLRHHRYESS-AYFVANCLIDM 569
Query: 371 YAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQG----AVAMVERLAKS-FV 425
Y+ + A + M + + +I W S+++ G A+ + +++ K+ FV
Sbjct: 570 YSKCGDVDTARHVFDSMSQKS------AISWTSMMTGYGMHGRGSEALDIFDKMRKAGFV 623
Query: 426 DMDPQDFSRYQFLLNVYA 443
P D + FL+ +YA
Sbjct: 624 ---PDDIT---FLVVLYA 635
Score = 118 bits (295), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 87/335 (25%), Positives = 146/335 (43%), Gaps = 46/335 (13%)
Query: 35 GSPDYTVLVFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLF 94
G+ DY +LV + + N +I+ + D + +M++ G P+ +T +
Sbjct: 110 GATDYALLVLERVTPSPAVWWNLLIREHIKQGRLDSAINVSCRMLRAGTRPDHFTLPHVL 169
Query: 95 GSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLI 154
+C + G HGL NG + + + N+L+ MY
Sbjct: 170 KACGELPSYRCGSAFHGLICCNGFESNVFICNALVAMYS--------------------- 208
Query: 155 SWNSIVSGHVRSGDMSAAHELFDIMPER---NVVSWNIMISGYSKSGNPGCSLKLFREMM 211
R G + A +FD + +R +V+SWN ++S + KS N +L LF +M
Sbjct: 209 ----------RCGSLEEASMIFDEITQRGIDDVISWNSIVSAHVKSSNAWTALDLFSKMT 258
Query: 212 ------KSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYS 265
+ R + ++ ++L ACG + + VHG +R P++ + ALID Y+
Sbjct: 259 LIVHEKPTNERSDIISIVNILPACGSLKAVPQTKEVHGNAIRNGTFPDVFVGNALIDAYA 318
Query: 266 KCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDE 325
KC +E A +VF+ M +++V WNAM+ G+ G E +LF + +I D
Sbjct: 319 KCGLMENAVKVFNMMEFKDVVSWNAMVAGYSQSGNFEAAFELFKNMRK-----ENIPLDV 373
Query: 326 ITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPN 360
+T+ VI + E FRQMI F PN
Sbjct: 374 VTWTAVIAGYSQRGCSHEALNLFRQMI-FSGSLPN 407
Score = 73.6 bits (179), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 64/298 (21%), Positives = 125/298 (41%), Gaps = 48/298 (16%)
Query: 148 MSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLF 207
+SPR L + +V+ ++ G A + + + V WN++I + K G ++ +
Sbjct: 93 ISPRSLGT--GVVASYLACGATDYALLVLERVTPSPAVWWNLLIREHIKQGRLDSAINVS 150
Query: 208 REMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKC 267
M+++G R + T+ VL ACG + G + HG + N+ + AL+ +YS+C
Sbjct: 151 CRMLRAGTRPDHFTLPHVLKACGELPSYRCGSAFHGLICCNGFESNVFICNALVAMYSRC 210
Query: 268 QKVEVAQRVFDSMADR---NLVCWNAMILGHC------------------IHGKPEEGIK 306
+E A +FD + R +++ WN+++ H +H KP
Sbjct: 211 GSLEEASMIFDEITQRGIDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERS 270
Query: 307 LFTALVNGTVAGGSIS------------------PDEITFIGVICACVRAELLTEGRKYF 348
++VN A GS+ PD +I A + L+ K F
Sbjct: 271 DIISIVNILPACGSLKAVPQTKEVHGNAIRNGTFPDVFVGNALIDAYAKCGLMENAVKVF 330
Query: 349 RQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLS 406
M++F + + M Y+ + E A E+ + M + +N+ + + W ++++
Sbjct: 331 -NMMEFKDV----VSWNAMVAGYSQSGNFEAAFELFKNMRK--ENIPLDVVTWTAVIA 381
>gi|414887370|tpg|DAA63384.1| TPA: hypothetical protein ZEAMMB73_689576 [Zea mays]
Length = 802
Score = 239 bits (611), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 148/464 (31%), Positives = 230/464 (49%), Gaps = 19/464 (4%)
Query: 43 VFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGC 102
VF+ ++ NA+I Y +S + + + +M+ + +TF S+ +CA G
Sbjct: 250 VFEEVDGKFDVVWNAMISGYVHSGMAVEAFELFRRMVLERVPLDEFTFTSVLSACANVGL 309
Query: 103 VERGGMCHGLALKNGVDF----ELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNS 158
G HG ++ +F LPV N+L+ Y G + AR +F M+ +D++SWN+
Sbjct: 310 FAHGKSVHGQIIRLQPNFVPEAALPVNNALVTFYSKCGNIAVARRIFDNMTLKDVVSWNT 369
Query: 159 IVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGN 218
I+SG+V S + A E+F+ MP +N +SW +M+SGY G +LKLF +M +
Sbjct: 370 ILSGYVESSCLDKAVEVFEEMPYKNELSWMVMVSGYVHGGFAEDALKLFNKMRSENVKPC 429
Query: 219 DKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFD 278
D T A + ACG G+ +HG+ V+ + + ALI +Y++C V+ A +F
Sbjct: 430 DYTYAGAIAACGELGALKHGKQLHGHIVQLGFEGSNSAGNALITMYARCGAVKEAHLMFL 489
Query: 279 SMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRA 338
M + + V WNAMI HG E ++LF +V I PD I+F+ V+ AC +
Sbjct: 490 VMPNIDSVSWNAMISALGQHGHGREALELFDRMV-----AEGIYPDRISFLTVLTACNHS 544
Query: 339 ELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFES 398
L+ EG +YF M + I P HY + +L A EA ++++ MP FE
Sbjct: 545 GLVDEGFRYFESMKRDFGIIPGEDHYTRLIDLLGRAGRIGEARDLIKTMP-------FEP 597
Query: 399 I--MWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRE 456
+W ++LS CR G + + A M PQ Y L N Y+ AG W D ARVR+
Sbjct: 598 TPSIWEAILSGCRTSGDMELGAHAADQLFKMTPQHDGTYILLSNTYSAAGCWVDAARVRK 657
Query: 457 LMKKRRMGRMPGCRLVDLKEVVEKLKVGHFWRGGMKEEVNKMME 500
LM+ R + + PGC ++ V VG + EV K +E
Sbjct: 658 LMRDRGVKKEPGCSWIEAGNKVHVFLVGD-TKHPEAHEVYKFLE 700
Score = 154 bits (388), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 132/476 (27%), Positives = 218/476 (45%), Gaps = 73/476 (15%)
Query: 52 TFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFM-PNSYTFVSLF--GSCAKTGCVERGGM 108
T NAVI AY+ + V + ++ +G + P+ Y+F +L G V
Sbjct: 121 TVLHNAVISAYARASHAAPAVAVFRSLLASGSLRPDDYSFTALLSAGGHLPNISVRHCAQ 180
Query: 109 CHGLALKNGVDFELPVMNSLINMYGCFGAMDC--------ARNMFVQMSPRDLISWNSIV 160
H LK+G L V N+L+ +Y M C AR + +M +D ++W ++V
Sbjct: 181 LHCSVLKSGAGGALSVCNALVALY-----MKCESPEATRDARKVLDEMPNKDDLTWTTMV 235
Query: 161 SGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDK 220
G+VR GD+ AA +F+ + + V WN MISGY SG + +LFR M+ ++
Sbjct: 236 VGYVRRGDVGAARSVFEEVDGKFDVVWNAMISGYVHSGMAVEAFELFRRMVLERVPLDEF 295
Query: 221 TMASVLTACGRSARFNEGRSVHGYTVRTSLKPNII------LDTALIDLYSKCQKVEVAQ 274
T SVL+AC F G+SVHG +R L+PN + ++ AL+ YSKC + VA+
Sbjct: 296 TFTSVLSACANVGLFAHGKSVHGQIIR--LQPNFVPEAALPVNNALVTFYSKCGNIAVAR 353
Query: 275 RVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFT-----------ALVNGTVAGG---- 319
R+FD+M +++V WN ++ G+ ++ +++F +V+G V GG
Sbjct: 354 RIFDNMTLKDVVSWNTILSGYVESSCLDKAVEVFEEMPYKNELSWMVMVSGYVHGGFAED 413
Query: 320 -----------SISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMA 368
++ P + T+ G I AC L G++ ++ N A +
Sbjct: 414 ALKLFNKMRSENVKPCDYTYAGAIAACGELGALKHGKQLHGHIVQLGFEGSNSAGN-ALI 472
Query: 369 NLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQG----AVAMVERLAKSF 424
+YA +EA + MP + +S+ W +++S G A+ + +R+
Sbjct: 473 TMYARCGAVKEAHLMFLVMP------NIDSVSWNAMISALGQHGHGREALELFDRMVAEG 526
Query: 425 VDMDPQDFSRYQFLLNVYAV--AGQWEDVARVRELMKKRRMGRMPG----CRLVDL 474
+ D R FL + A +G ++ R E M KR G +PG RL+DL
Sbjct: 527 IYPD-----RISFLTVLTACNHSGLVDEGFRYFESM-KRDFGIIPGEDHYTRLIDL 576
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 64/269 (23%), Positives = 120/269 (44%), Gaps = 41/269 (15%)
Query: 128 LINMYGCFGAMDCARNMF-VQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMP--ERNV 184
LI++Y + A +F P +S S+V+ + + + AA FD +P R+
Sbjct: 65 LIHLYTLSRDLPAAATLFCADPCP---VSATSLVAAYAAADRLPAAVSFFDAVPPARRDT 121
Query: 185 VSWNIMISGYSKSGNPGCSLKLFREMMKSG-FRGNDKTMASVLTACGRSARFN--EGRSV 241
V N +IS Y+++ + ++ +FR ++ SG R +D + ++L+A G + +
Sbjct: 122 VLHNAVISAYARASHAAPAVAVFRSLLASGSLRPDDYSFTALLSAGGHLPNISVRHCAQL 181
Query: 242 HGYTVRTSLKPNIILDTALIDLYSKCQKVEV---AQRVFDSMADRNLVCWNAMILGHCIH 298
H +++ + + AL+ LY KC+ E A++V D M +++ + W M++G+
Sbjct: 182 HCSVLKSGAGGALSVCNALVALYMKCESPEATRDARKVLDEMPNKDDLTWTTMVVGYVRR 241
Query: 299 GKPEEGIKLF-----------TALVNGTVAGG---------------SISPDEITFIGVI 332
G +F A+++G V G + DE TF V+
Sbjct: 242 GDVGAARSVFEEVDGKFDVVWNAMISGYVHSGMAVEAFELFRRMVLERVPLDEFTFTSVL 301
Query: 333 CACVRAELLTEGRKYFRQMIDFYKIKPNF 361
AC L G+ Q+I +++PNF
Sbjct: 302 SACANVGLFAHGKSVHGQII---RLQPNF 327
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 51/208 (24%), Positives = 93/208 (44%), Gaps = 16/208 (7%)
Query: 1 MKQLLQIQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIK 60
+K Q+ H++ G +NS L+ A G+ L+F + N + NA+I
Sbjct: 446 LKHGKQLHGHIVQLGFEGSNSAGNA-LITMYARCGAVKEAHLMFLVMPNIDSVSWNAMIS 504
Query: 61 AYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERG-----GMCHGLALK 115
A + + + +M+ G P+ +F+++ +C +G V+ G M +
Sbjct: 505 ALGQHGHGREALELFDRMVAEGIYPDRISFLTVLTACNHSGLVDEGFRYFESMKRDFGII 564
Query: 116 NGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLIS-WNSIVSGHVRSGDMS---- 170
G D LI++ G G + AR++ M S W +I+SG SGDM
Sbjct: 565 PGEDH----YTRLIDLLGRAGRIGEARDLIKTMPFEPTPSIWEAILSGCRTSGDMELGAH 620
Query: 171 AAHELFDIMPERNVVSWNIMISGYSKSG 198
AA +LF + P+ + ++ ++ + YS +G
Sbjct: 621 AADQLFKMTPQHD-GTYILLSNTYSAAG 647
>gi|115436706|ref|NP_001043111.1| Os01g0390600 [Oryza sativa Japonica Group]
gi|21328171|dbj|BAC00748.1| pentatricopeptide (PPR) repeat-containing-like protein [Oryza
sativa Japonica Group]
gi|113532642|dbj|BAF05025.1| Os01g0390600 [Oryza sativa Japonica Group]
Length = 657
Score = 239 bits (611), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 131/402 (32%), Positives = 215/402 (53%), Gaps = 12/402 (2%)
Query: 70 QGVVFYLQMIKN-GFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSL 128
Q + Y+ M+ G N V L +C++ V G H + LKNG D V +L
Sbjct: 258 QALRTYVAMVGTVGIRANEVILVGLVKACSRHSAVSEGQQLHTVILKNGFDAHAFVQATL 317
Query: 129 INMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWN 188
I+ YG +D A+ F + SWN++++ +R + A +LFD MPER+ +SW+
Sbjct: 318 IHYYGSCDFIDHAQMQFKLSDKSHVASWNALMASLLRRNLVHEARQLFDDMPERDTISWS 377
Query: 189 IMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRT 248
+ISGY +SGN +L++F M+ +G N+ T+AS L+A S + R +H Y +
Sbjct: 378 TLISGYVQSGNSNMALQIFCSMLDAGVEPNEITLASALSAVANSGTLGQARWIHDYIISR 437
Query: 249 SLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVC--WNAMILGHCIHGKPEEGIK 306
S++ L LI++Y+KC + A ++F+ + D+++ WN++I IHG ++
Sbjct: 438 SIQLTDKLSAGLINVYAKCGSIAEAVQLFNHVKDKSISVSPWNSIICNLAIHGYVNMSLE 497
Query: 307 LFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWC 366
LF+ L + T I P+ IT++GV+ AC A ++ EG++ F M Y I+P HY C
Sbjct: 498 LFSQLQSTT----HIKPNSITYLGVLNACCHAGMVAEGKRQFESMRQQYGIQPEIKHYGC 553
Query: 367 MANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVD 426
M +L A EEAE +++ MP M + + W +L+ R QG VA+ E+ A+
Sbjct: 554 MVDLLCRAGYLEEAELLIKTMP-----MKADVVAWGCILAAARTQGNVALGEKAAEELSK 608
Query: 427 MDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPG 468
+DP + L N+YA AG W +V+ VR+ ++ + R+ G
Sbjct: 609 LDPSHGASKIALSNLYADAGHWSNVSVVRKELQNENLERLTG 650
Score = 135 bits (339), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 109/458 (23%), Positives = 204/458 (44%), Gaps = 54/458 (11%)
Query: 58 VIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCA-KTGCVERGGMCHGLALKN 116
VI A S S P++ + + M+ PN T + + A G G HG+A++
Sbjct: 113 VISALSRSGHPERALAVFRDMLTEAVQPNEVTLAEVLTAMACDHGAPAPVGAAHGVAVRR 172
Query: 117 GVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELF 176
G+D + V +L++ YG + AR++F M R+ ++WN++++ +V++G ++ A E+F
Sbjct: 173 GLDGFVIVATNLVHAYGAVSQVPSARSIFELMPDRNTVTWNTMLNCYVKAGMINMAAEVF 232
Query: 177 DIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKS-GFRGNDKTMASVLTACGRSARF 235
++PER+ VSW MI GY + +L+ + M+ + G R N+ + ++ AC R +
Sbjct: 233 GVIPERDEVSWLTMIDGYMCADFLLQALRTYVAMVGTVGIRANEVILVGLVKACSRHSAV 292
Query: 236 NEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQ--------------------- 274
+EG+ +H ++ + + LI Y C ++ AQ
Sbjct: 293 SEGQQLHTVILKNGFDAHAFVQATLIHYYGSCDFIDHAQMQFKLSDKSHVASWNALMASL 352
Query: 275 ----------RVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPD 324
++FD M +R+ + W+ +I G+ G +++F ++++ V P+
Sbjct: 353 LRRNLVHEARQLFDDMPERDTISWSTLISGYVQSGNSNMALQIFCSMLDAGV-----EPN 407
Query: 325 EITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEIL 384
EIT + A + L + R + I I+ + N+YA EA ++
Sbjct: 408 EITLASALSAVANSGTLGQAR-WIHDYIISRSIQLTDKLSAGLINVYAKCGSIAEAVQLF 466
Query: 385 RKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERL---AKSFVDMDPQDFSRYQFLLNV 441
+ + + ++S W S++ G V M L +S + P + Y +LN
Sbjct: 467 NHVKDKSISVS----PWNSIICNLAIHGYVNMSLELFSQLQSTTHIKPNSIT-YLGVLNA 521
Query: 442 YAVAGQWEDVARVRELMKKRRMGRMP-----GCRLVDL 474
AG + R E M++ + G P GC +VDL
Sbjct: 522 CCHAGMVAEGKRQFESMRQ-QYGIQPEIKHYGC-MVDL 557
Score = 116 bits (290), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 114/409 (27%), Positives = 183/409 (44%), Gaps = 62/409 (15%)
Query: 78 MIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGV-DFELPVMNSLINMYGCFG 136
M P + VS S A + G H LA K+G+ L V NSL+ Y
Sbjct: 1 MTTRAGAPLAVFLVSSLKSAAAR--LSHGEQLHALAAKSGLLTSNLFVRNSLLAFYSRV- 57
Query: 137 AMDCARNMFVQMSP--RDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGY 194
A A ++F ++ P RD + N ++S R+G + A L MP+R+ VS+ +IS
Sbjct: 58 APSLAYHLFDEIPPLLRDATAHNILLSALARAGRLERAQCLLAEMPQRDAVSFTTVISAL 117
Query: 195 SKSGNPGCSLKLFREMMKSGFRGNDKTMASVLT--ACGRSARFNEGRSVHGYTVRTSLKP 252
S+SG+P +L +FR+M+ + N+ T+A VLT AC A G + HG VR L
Sbjct: 118 SRSGHPERALAVFRDMLTEAVQPNEVTLAEVLTAMACDHGAPAPVG-AAHGVAVRRGLDG 176
Query: 253 NIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGK-----------P 301
+I+ T L+ Y +V A+ +F+ M DRN V WN M+ + G P
Sbjct: 177 FVIVATNLVHAYGAVSQVPSARSIFELMPDRNTVTWNTMLNCYVKAGMINMAAEVFGVIP 236
Query: 302 E--------------------EGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELL 341
E + ++ + A+V GTV I +E+ +G++ AC R +
Sbjct: 237 ERDEVSWLTMIDGYMCADFLLQALRTYVAMV-GTVG---IRANEVILVGLVKACSRHSAV 292
Query: 342 TEGRKYFRQMIDFYKIKPNF-AHYWCMANL---YAGAELTEEAEEILRKMPEDNDNMSFE 397
+EG Q + +K F AH + A L Y + + A ++ K+ + + S+
Sbjct: 293 SEG-----QQLHTVILKNGFDAHAFVQATLIHYYGSCDFIDHA-QMQFKLSDKSHVASWN 346
Query: 398 SIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAG 446
++M SL R +V + F DM +D + L++ Y +G
Sbjct: 347 ALM----ASLLRRN----LVHEARQLFDDMPERDTISWSTLISGYVQSG 387
>gi|297843364|ref|XP_002889563.1| PDE247 [Arabidopsis lyrata subsp. lyrata]
gi|297335405|gb|EFH65822.1| PDE247 [Arabidopsis lyrata subsp. lyrata]
Length = 500
Score = 239 bits (611), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 133/407 (32%), Positives = 214/407 (52%), Gaps = 14/407 (3%)
Query: 82 GFMPNSYTFVSLFGSCAK--TGCVERGGMCHGLALKNGVDF-ELPVMNSLINMYGCFGAM 138
G PN TF+++ C +G G + HG A K G+D + V ++I MY G +
Sbjct: 66 GVEPNHITFIAILSGCGDFPSGSEALGDLLHGYACKLGLDRNHVMVGTAIIGMYSKRGRV 125
Query: 139 DCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSG 198
AR +F M ++ ++WN+++ G++RSG + A ++FD MPER+++SW MI+G+ G
Sbjct: 126 KKARCVFDYMEDKNSVTWNTMIDGYMRSGQVDNAAKMFDKMPERDLISWTAMINGFVNKG 185
Query: 199 NPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDT 258
+L FREM SG + + + + L AC + G VH Y + K N+ +
Sbjct: 186 FHEEALAWFREMQISGVKPDYVAIIAALNACTNLGALSFGLWVHRYVMSQDFKNNVRVSN 245
Query: 259 ALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAG 318
+LIDLY +C VE A++VFD M R +V WN++I+G +G E + F +
Sbjct: 246 SLIDLYCRCGCVEFARQVFDKMEKRTVVSWNSVIVGFAANGNAHESLVYFRKMQE----- 300
Query: 319 GSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTE 378
PD +TF G + AC L+ EG +YF+ MI Y+I P HY C+ +LY+ A E
Sbjct: 301 ERFKPDAVTFTGALTACSHVGLVEEGLRYFQIMISDYRISPRIEHYGCLVDLYSRAGRLE 360
Query: 379 EAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQG-AVAMVERLAKSFVDMDPQDFSRYQF 437
+A ++++ MP M ++ SLL+ CR G + E+L K D++ + S Y
Sbjct: 361 DALKLVQSMP-----MKPNEVVIGSLLAACRNHGNNTVLAEKLMKHLTDLNVKSHSNYVI 415
Query: 438 LLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLKEVVEKLKVG 484
L N+YA G+WE +++R MK + + PG +++ + G
Sbjct: 416 LSNMYAADGKWEGASKMRRKMKGLGLKKQPGFSSIEIDDCTHVFMAG 462
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 55/225 (24%), Positives = 94/225 (41%), Gaps = 32/225 (14%)
Query: 57 AVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKN 116
A+I + N ++ + ++ +M +G P+ ++ +C G + G H +
Sbjct: 176 AMINGFVNKGFHEEALAWFREMQISGVKPDYVAIIAALNACTNLGALSFGLWVHRYVMSQ 235
Query: 117 GVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELF 176
+ V NSLI++Y G ++ AR +F +M R ++SWNS+
Sbjct: 236 DFKNNVRVSNSLIDLYCRCGCVEFARQVFDKMEKRTVVSWNSV----------------- 278
Query: 177 DIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFN 236
I G++ +GN SL FR+M + F+ + T LTAC
Sbjct: 279 --------------IVGFAANGNAHESLVYFRKMQEERFKPDAVTFTGALTACSHVGLVE 324
Query: 237 EG-RSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSM 280
EG R + P I L+DLYS+ ++E A ++ SM
Sbjct: 325 EGLRYFQIMISDYRISPRIEHYGCLVDLYSRAGRLEDALKLVQSM 369
Score = 75.1 bits (183), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 90/375 (24%), Positives = 150/375 (40%), Gaps = 98/375 (26%)
Query: 147 QMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKL 206
Q + + +SW S ++ R+G ++ A K
Sbjct: 30 QSTSENTVSWTSRITLLTRNGRLAEA-------------------------------AKE 58
Query: 207 FREMMKSGFRGNDKTMASVLTACGRSARFNE--GRSVHGYTVRTSLKPN-IILDTALIDL 263
F +M +G N T ++L+ CG +E G +HGY + L N +++ TA+I +
Sbjct: 59 FSDMRLAGVEPNHITFIAILSGCGDFPSGSEALGDLLHGYACKLGLDRNHVMVGTAIIGM 118
Query: 264 YSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLF-----------TALV 312
YSK +V+ A+ VFD M D+N V WN MI G+ G+ + K+F TA++
Sbjct: 119 YSKRGRVKKARCVFDYMEDKNSVTWNTMIDGYMRSGQVDNAAKMFDKMPERDLISWTAMI 178
Query: 313 NGTVAGG---------------SISPDEITFIGVICACVRAELLTEGRKYFRQMI--DFY 355
NG V G + PD + I + AC L+ G R ++ DF
Sbjct: 179 NGFVNKGFHEEALAWFREMQISGVKPDYVAIIAALNACTNLGALSFGLWVHRYVMSQDF- 237
Query: 356 KIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDN-------------DNMSFESIMWV 402
K N + +LY E A ++ KM + + + ES+++
Sbjct: 238 --KNNVRVSNSLIDLYCRCGCVEFARQVFDKMEKRTVVSWNSVIVGFAANGNAHESLVYF 295
Query: 403 SLLSLCRFQ-------GA------VAMVERLAKSFVDM------DPQDFSRYQFLLNVYA 443
+ RF+ GA V +VE + F M P+ Y L+++Y+
Sbjct: 296 RKMQEERFKPDAVTFTGALTACSHVGLVEEGLRYFQIMISDYRISPR-IEHYGCLVDLYS 354
Query: 444 VAGQWEDVARVRELM 458
AG+ ED ++ + M
Sbjct: 355 RAGRLEDALKLVQSM 369
Score = 38.5 bits (88), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 40/211 (18%), Positives = 91/211 (43%), Gaps = 6/211 (2%)
Query: 12 ITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSNSCVPDQG 71
+ S F NN + +L+ G ++ VF + N+VI ++ + +
Sbjct: 232 VMSQDFKNNVRVSNSLIDLYCRCGCVEFARQVFDKMEKRTVVSWNSVIVGFAANGNAHES 291
Query: 72 VVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKN-GVDFELPVMNSLIN 130
+V++ +M + F P++ TF +C+ G VE G + + + + + L++
Sbjct: 292 LVYFRKMQEERFKPDAVTFTGALTACSHVGLVEEGLRYFQIMISDYRISPRIEHYGCLVD 351
Query: 131 MYGCFGAMDCARNMF--VQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVS-- 186
+Y G ++ A + + M P +++ + + + + A +L + + NV S
Sbjct: 352 LYSRAGRLEDALKLVQSMPMKPNEVVIGSLLAACRNHGNNTVLAEKLMKHLTDLNVKSHS 411
Query: 187 -WNIMISGYSKSGNPGCSLKLFREMMKSGFR 216
+ I+ + Y+ G + K+ R+M G +
Sbjct: 412 NYVILSNMYAADGKWEGASKMRRKMKGLGLK 442
>gi|359489007|ref|XP_002278681.2| PREDICTED: pentatricopeptide repeat-containing protein
At1g74630-like [Vitis vinifera]
Length = 663
Score = 239 bits (611), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 142/442 (32%), Positives = 226/442 (51%), Gaps = 14/442 (3%)
Query: 35 GSPDYTVLVFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLF 94
G Y +F I+ P TF N +I+ YS S P Q V + QM +N P+ +TF L
Sbjct: 230 GCLHYADRLFSQIHQPNTFFYNTLIRGYSKSSSPSQSVQLFNQMRRNCVDPDGFTFTFLL 289
Query: 95 GSCAKT----GCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSP 150
++ + HG LK G F L VMN+LI++Y G A +F +M
Sbjct: 290 KGRSRMRIDLPLIVASDEIHGAVLKLGFCFHLFVMNALIHLYAARGVPAAAHQVFNEMVG 349
Query: 151 RDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREM 210
D++SW+ +V HVR+G++ A ++F MPER+VVSW +M+SGY+++ +L+LFREM
Sbjct: 350 ADVVSWSGLVVAHVRAGELELARQVFYEMPERDVVSWTVMVSGYAQAKRSREALELFREM 409
Query: 211 MKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKV 270
G R ++ M SV++AC G VH Y + L ALID+Y+KC +
Sbjct: 410 RDVGVRPDEVAMVSVISACTSLGDLETGFEVHRYIDENGFGWMVSLCNALIDMYAKCGCM 469
Query: 271 EVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIG 330
++A +VF++M ++L+ WN+MI HG E+ ++FT ++ I PD +TF+
Sbjct: 470 DLAWQVFNNMERKSLITWNSMISACANHGNAEDAFRVFTLMLY-----SGIRPDGVTFLA 524
Query: 331 VICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPED 390
++ A + +G F M Y ++ HY CM ++ A EEA +++ M
Sbjct: 525 LLTAYTHKGWVDDGYGLFESMQRDYGVEAGVEHYGCMVDMLGRAGRLEEAYKLITSM--- 581
Query: 391 NDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWED 450
+M ++W +LL+ CR G V M ER+ K +++ P + Y L ++Y AG+ +
Sbjct: 582 --SMPCNDVVWGALLAACRIYGDVEMGERVLKKLIELKPDEGGYYILLRDIYVAAGRRAE 639
Query: 451 VARVRELMKKRRMGRMPGCRLV 472
+R M + GC V
Sbjct: 640 AIELRRAMDVNGAKKTLGCSWV 661
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 53/216 (24%), Positives = 92/216 (42%), Gaps = 34/216 (15%)
Query: 166 SGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASV 225
+G + A LF + + N +N +I GYSKS +P S++LF +M ++ + T +
Sbjct: 229 NGCLHYADRLFSQIHQPNTFFYNTLIRGYSKSSSPSQSVQLFNQMRRNCVDPDGFTFTFL 288
Query: 226 LTACGRS-ARFN-----EGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDS 279
L GRS R + +HG ++ ++ + ALI LY+ A +VF+
Sbjct: 289 LK--GRSRMRIDLPLIVASDEIHGAVLKLGFCFHLFVMNALIHLYAARGVPAAAHQVFNE 346
Query: 280 MADRNLVCWNAMILGHCIHGK-----------PEEGIKLFTALVNGTVAGG--------- 319
M ++V W+ +++ H G+ PE + +T +V+G
Sbjct: 347 MVGADVVSWSGLVVAHVRAGELELARQVFYEMPERDVVSWTVMVSGYAQAKRSREALELF 406
Query: 320 ------SISPDEITFIGVICACVRAELLTEGRKYFR 349
+ PDE+ + VI AC L G + R
Sbjct: 407 REMRDVGVRPDEVAMVSVISACTSLGDLETGFEVHR 442
>gi|297851096|ref|XP_002893429.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297339271|gb|EFH69688.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 790
Score = 239 bits (611), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 138/428 (32%), Positives = 219/428 (51%), Gaps = 11/428 (2%)
Query: 56 NAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALK 115
NA+I Y N + + + +M+ +G + +T+ S+ +CA ++ G H L+
Sbjct: 255 NAMISGYVNCGLYQEALEMVRRMVSSGIELDEFTYPSVIRACANARLLQLGKQVHAYVLR 314
Query: 116 NGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHEL 175
DF NSL+ +Y G + AR +F +M +DL+SWN+++SG+V SG + A +
Sbjct: 315 RE-DFSFHFDNSLVTLYYKCGKFNEARAIFEKMPAKDLVSWNALLSGYVSSGHIGEAKLI 373
Query: 176 FDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARF 235
F M E+N++SW IMISG +++G LKLF M + GF D + + +C +
Sbjct: 374 FKEMKEKNILSWMIMISGLAENGFGEEGLKLFSCMKREGFEPCDYAFSGAIKSCAVLGAY 433
Query: 236 NEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGH 295
G+ H V+ ++ ALI +Y+KC VE AQ+VF +M + V WNA+I
Sbjct: 434 CNGQQFHAQLVKIGFDSSLSAGNALITMYAKCGVVEEAQQVFRTMPCLDSVSWNALIAAL 493
Query: 296 CIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFY 355
HG E + ++ ++ I PD ITF+ V+ AC A L+ +GRKYF M Y
Sbjct: 494 GQHGHGVEAVDVYEEMLK-----KGIRPDRITFLTVLTACSHAGLVDQGRKYFNSMETVY 548
Query: 356 KIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVA 415
+I P HY + +L + EAE I+ +P + +W +LLS CR G +
Sbjct: 549 RIPPGADHYARLIDLLCRSGKFSEAESIIESLP-----FKPTAEIWEALLSGCRVHGNME 603
Query: 416 MVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLK 475
+ A + P+ Y L N+YA GQWE+VARVR+LM+ R + + C ++++
Sbjct: 604 LGIIAADKLFGLIPEHDGTYMLLSNMYAATGQWEEVARVRKLMRDRGVKKEVACSWIEME 663
Query: 476 EVVEKLKV 483
V V
Sbjct: 664 TQVHTFLV 671
Score = 136 bits (343), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 108/426 (25%), Positives = 189/426 (44%), Gaps = 62/426 (14%)
Query: 52 TFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCA-----KTGCVERG 106
T NA+I +S++ + + +M GF P+ +T+ S+ A + CV+
Sbjct: 113 TVMYNAMITGFSHNNDGYSAINLFCKMKHEGFKPDDFTYASVLAGLALVVDDEKQCVQ-- 170
Query: 107 GMCHGLALKNGVDFELPVMNSLINMYG-CFGA---MDCARNMFVQMSPRDLISWNSIVSG 162
H ALK+G + V N+L+++Y C + + AR +F + +D SW ++++G
Sbjct: 171 --FHAAALKSGAGYVTSVSNALVSVYSRCASSPSLLHSARKVFDDIPEKDERSWTTMMTG 228
Query: 163 HVRSGDMSAAHELFDIMPER-NVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKT 221
+V++G EL M E +V++N MISGY G +L++ R M+ SG ++ T
Sbjct: 229 YVKNGCFDLGKELLKGMDENMKLVAYNAMISGYVNCGLYQEALEMVRRMVSSGIELDEFT 288
Query: 222 MASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMA 281
SV+ AC + G+ VH Y +R + D +L+ LY KC K A+ +F+ M
Sbjct: 289 YPSVIRACANARLLQLGKQVHAYVLRRE-DFSFHFDNSLVTLYYKCGKFNEARAIFEKMP 347
Query: 282 DRNLVCWNAMILGHCIHGK-------------------------------PEEGIKLFTA 310
++LV WNA++ G+ G EEG+KLF+
Sbjct: 348 AKDLVSWNALLSGYVSSGHIGEAKLIFKEMKEKNILSWMIMISGLAENGFGEEGLKLFSC 407
Query: 311 LVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANL 370
+ P + F G I +C G+++ Q++ + + + +
Sbjct: 408 MKR-----EGFEPCDYAFSGAIKSCAVLGAYCNGQQFHAQLVKI-GFDSSLSAGNALITM 461
Query: 371 YAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQG----AVAMVERLAKSFVD 426
YA + EEA+++ R MP +S+ W +L++ G AV + E + K +
Sbjct: 462 YAKCGVVEEAQQVFRTMP------CLDSVSWNALIAALGQHGHGVEAVDVYEEMLKKGIR 515
Query: 427 MDPQDF 432
D F
Sbjct: 516 PDRITF 521
Score = 107 bits (267), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 98/388 (25%), Positives = 178/388 (45%), Gaps = 51/388 (13%)
Query: 110 HGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDM 169
HG + G ++N LI++Y +D AR +F ++S D I+ ++VSG+ SGD+
Sbjct: 37 HGNIITFGFQPHAHILNRLIDVYCKSSELDYARQLFDEISEPDKIARTTMVSGYCASGDI 96
Query: 170 SAAHELFDIMP--ERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLT 227
+ A +F+ P R+ V +N MI+G+S + + ++ LF +M GF+ +D T ASVL
Sbjct: 97 ALARSVFEETPVSMRDTVMYNAMITGFSHNNDGYSAINLFCKMKHEGFKPDDFTYASVLA 156
Query: 228 ACGRSARFNEGRSV--HGYTVRTSLKPNIILDTALIDLYSKCQK----VEVAQRVFDSMA 281
+E + V H +++ + AL+ +YS+C + A++VFD +
Sbjct: 157 GLALVVD-DEKQCVQFHAAALKSGAGYVTSVSNALVSVYSRCASSPSLLHSARKVFDDIP 215
Query: 282 DRNLVCWNAMILGHCIHG----------KPEEGIKL--FTALVNGTVAGG---------- 319
+++ W M+ G+ +G +E +KL + A+++G V G
Sbjct: 216 EKDERSWTTMMTGYVKNGCFDLGKELLKGMDENMKLVAYNAMISGYVNCGLYQEALEMVR 275
Query: 320 -----SISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYW--CMANLYA 372
I DE T+ VI AC A LL G +Q+ + + +F+ ++ + LY
Sbjct: 276 RMVSSGIELDEFTYPSVIRACANARLLQLG----KQVHAYVLRREDFSFHFDNSLVTLYY 331
Query: 373 GAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDF 432
EA I KMP + + W +LLS G + + + F +M ++
Sbjct: 332 KCGKFNEARAIFEKMPAKD------LVSWNALLSGYVSSGHIGEAKLI---FKEMKEKNI 382
Query: 433 SRYQFLLNVYAVAGQWEDVARVRELMKK 460
+ +++ A G E+ ++ MK+
Sbjct: 383 LSWMIMISGLAENGFGEEGLKLFSCMKR 410
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 68/273 (24%), Positives = 111/273 (40%), Gaps = 37/273 (13%)
Query: 42 LVFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTG 101
L+FK + +I + + ++G+ + M + GF P Y F SCA G
Sbjct: 372 LIFKEMKEKNILSWMIMISGLAENGFGEEGLKLFSCMKREGFEPCDYAFSGAIKSCAVLG 431
Query: 102 CVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVS 161
G H +K G D L N+LI MY G ++ A+ +F M D +SWN+
Sbjct: 432 AYCNGQQFHAQLVKIGFDSSLSAGNALITMYAKCGVVEEAQQVFRTMPCLDSVSWNA--- 488
Query: 162 GHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKT 221
+I+ + G+ ++ ++ EM+K G R + T
Sbjct: 489 ----------------------------LIAALGQHGHGVEAVDVYEEMLKKGIRPDRIT 520
Query: 222 MASVLTACGRSARFNEGRS-VHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSM 280
+VLTAC + ++GR + + P LIDL + K A+ + +S+
Sbjct: 521 FLTVLTACSHAGLVDQGRKYFNSMETVYRIPPGADHYARLIDLLCRSGKFSEAESIIESL 580
Query: 281 ADRNLV-CWNAMILGHCIHGKPEEGI----KLF 308
+ W A++ G +HG E GI KLF
Sbjct: 581 PFKPTAEIWEALLSGCRVHGNMELGIIAADKLF 613
Score = 46.6 bits (109), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 26/112 (23%), Positives = 51/112 (45%), Gaps = 9/112 (8%)
Query: 231 RSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNA 290
R R+VHG + +P+ + LID+Y K +++ A+++FD +++ + +
Sbjct: 26 RRTSLQLARAVHGNIITFGFQPHAHILNRLIDVYCKSSELDYARQLFDEISEPDKIARTT 85
Query: 291 MILGHCIHGKPEEGIKLF---------TALVNGTVAGGSISPDEITFIGVIC 333
M+ G+C G +F T + N + G S + D + I + C
Sbjct: 86 MVSGYCASGDIALARSVFEETPVSMRDTVMYNAMITGFSHNNDGYSAINLFC 137
>gi|115447355|ref|NP_001047457.1| Os02g0620800 [Oryza sativa Japonica Group]
gi|47847758|dbj|BAD21535.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
gi|47847799|dbj|BAD21575.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
gi|113536988|dbj|BAF09371.1| Os02g0620800 [Oryza sativa Japonica Group]
Length = 530
Score = 239 bits (611), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 147/493 (29%), Positives = 259/493 (52%), Gaps = 22/493 (4%)
Query: 1 MKQLLQIQAHLITSGLFFNNSFWTINLLKH-SADFGSPDYTVLVFKCINNPGTFCVNAVI 59
+ L Q+ AH + +G + T +LL+ S Y +F +P F +A++
Sbjct: 23 LAHLKQLHAHAVVTGRAAAQTT-TFHLLRFASLRLSCLPYARRLFDATPSPNVFLYSAML 81
Query: 60 KAYSNSCVPDQ-----GVVFYLQMIKNGF-MPNSYTF-VSLFGSCAKTGCVERGGMCHGL 112
AY+ + Q + +L+M++ G PN + + + L +CA + R CH
Sbjct: 82 SAYAAASSHSQEHARDSLALFLRMLRRGRPAPNQFVYPLVLRAACAIGVQLVRSIHCH-- 139
Query: 113 ALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAA 172
A K+G + SL++ Y +G M AR +F ++ R+++SW ++VSG+ R+G + A
Sbjct: 140 ACKDGFYGHDFIRTSLLDGYSRYGMMGDARKLFDGLTDRNVVSWTALVSGYARAGKVGDA 199
Query: 173 HELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRS 232
LF+ MP+R+V +WN +I+G +++G ++ +FR M+ GFR N T++ +L+ACG
Sbjct: 200 IVLFERMPQRDVPAWNAIIAGCTQNGLFVEAVGIFRRMVDEGFRPNGTTVSCLLSACGHL 259
Query: 233 ARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMI 292
G+ +HGY R+ + + LID+Y KC + A+ +FD+ +DR L WN++I
Sbjct: 260 GMLKIGKVIHGYAWRSCVGFGSSVVNGLIDMYGKCGNLMEAKWIFDAFSDRGLTTWNSLI 319
Query: 293 LGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMI 352
+HG E I +F ++ N + PDE+TF+G++ AC + EG +YF M
Sbjct: 320 NCLALHGCSESAIAVFNSMRN-----EGVQPDEVTFVGLLNACTHGGFVDEGLRYFELMC 374
Query: 353 DFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQG 412
D + I+P HY C+ +L A ++A + M D ++W SLL+ CR
Sbjct: 375 DEHGIEPEIEHYGCVVDLLCRAGRFQDAMNFINDMKVQPD-----EVIWGSLLNACRIHR 429
Query: 413 AVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMG-RMPGCRL 471
+ + E ++ +D++P + + L N+Y+ G WE+V +VR+LMK+ G ++PGC
Sbjct: 430 HLELAEHAIRNLLDLNPSNANYVVMLANLYSEGGFWEEVRKVRKLMKEDVTGKKLPGCSW 489
Query: 472 VDLKEVVEKLKVG 484
+++ + G
Sbjct: 490 IEVDRKTRRFYSG 502
>gi|224118458|ref|XP_002331487.1| predicted protein [Populus trichocarpa]
gi|222873565|gb|EEF10696.1| predicted protein [Populus trichocarpa]
Length = 606
Score = 239 bits (611), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 162/517 (31%), Positives = 260/517 (50%), Gaps = 53/517 (10%)
Query: 1 MKQLLQIQAHLITSGLFFNNSFWTINLLKHSA--DFGSPDYTVLVFKCINNPGTFCVNAV 58
M QL QIQAH+ + L +++F +L A D G ++ L+F + NP T+ N +
Sbjct: 63 MLQLKQIQAHMTKTALI-SHTFPVSRVLAFCALSDSGDINHAHLLFSQLQNPNTYIWNTM 121
Query: 59 IKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGV 118
I+ YS + + G +F+ QM++ G + +FV +C + V G H + K G
Sbjct: 122 IRGYSKAKMGQTGFLFFCQMVQKGVEMDCRSFVFALKACEQFLGVLEGKSVHCVVWKMGF 181
Query: 119 DFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDI 178
+ L V N L++ YG G + AR +F ++S RD++SW S++ G+ + A +LFD
Sbjct: 182 VYTLLVQNGLVHFYGLRGCLGLARLVFDEISERDVVSWTSMIDGYSKHKWCDEALKLFDS 241
Query: 179 MPERNVVSWN--IMIS------------------GYSKSGNPGCSLKLF----------- 207
M VV N MI+ Y K+ N SL L
Sbjct: 242 MLMYGVVEPNEVTMIAVLSSCSQKGDLILGKTFLEYVKTRNVTRSLNLMNAILDMYVKCG 301
Query: 208 -----REM---MKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKP-NIILDT 258
RE+ M + F + T+A VL CG+ + G+ +H VR ++IL
Sbjct: 302 CLDSAREIFDTMGAAFAPMENTLACVLPVCGQLGCLDVGQWIHRNYVRMRYNEISVILAN 361
Query: 259 ALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAG 318
ALID+Y+KC + A +VF+ M +RNLV WN+MI + HG ++ + +F +++G
Sbjct: 362 ALIDMYAKCGVIHEAAKVFNDMPERNLVSWNSMITAYASHGHAKQALSVFERMISG---- 417
Query: 319 GSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTE 378
PD+IT +GV+ AC L+ EG++YF+ M Y I+P HY CM +L L E
Sbjct: 418 -GFKPDDITLVGVLSACSHGGLVAEGQEYFQNMKRKYGIEPKNEHYACMIDLLGRVGLLE 476
Query: 379 EAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFL 438
+A E++ KMP M + W +L+ CR G V + + A +++DP+D Y L
Sbjct: 477 DAYELITKMP-----MEPSAAAWGALVHACRMHGNVEVAKIAAPRLLELDPEDSGIYVLL 531
Query: 439 LNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLK 475
N+ A +W DV R +M++RR+ ++PG +V+++
Sbjct: 532 ANICASGRRWGDVKMARRMMRERRVKKIPGRSIVEVE 568
>gi|297739965|emb|CBI30147.3| unnamed protein product [Vitis vinifera]
Length = 538
Score = 239 bits (610), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 139/430 (32%), Positives = 223/430 (51%), Gaps = 49/430 (11%)
Query: 56 NAVIKAYSNSCVPDQGVVFYLQMIKNGFMP-NSYTFVSLFGSCAKTGCVERGGMCHGLAL 114
N +I+ YS S P + +V Y+ MI G P N++TF L SCA+ +E G H +
Sbjct: 3 NTMIRGYSRSDNPREAIVLYMSMIAKGIAPPNNFTFPFLLNSCARLSSLEPGHEVHSHII 62
Query: 115 KNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHE 174
K+G + +L V N+LI++Y FG ++ AR +F + RDL+S+N+
Sbjct: 63 KHGFESDLFVRNALIHLYSVFGNLNLARTLFDESLVRDLVSYNT---------------- 106
Query: 175 LFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSAR 234
MI GY++ P +L LF EM S ++ T+ +VL+AC R
Sbjct: 107 ---------------MIKGYAEVNQPESALCLFGEMQNS----DEVTLVAVLSACARLGA 147
Query: 235 FNEGRSV-HGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMAD--RNLVCWNAM 291
F+ G+ + H Y N IL A++D+Y+KC ++ A +F + + +N+M
Sbjct: 148 FDLGKRLYHQYIENGVFNQNTILTAAVMDMYAKCGSIDSALEIFRRVGKNMKTGFVFNSM 207
Query: 292 ILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQM 351
I G HG E I +F L++ + PDE+TF+GV+CAC + L+ EG+K F M
Sbjct: 208 IAGLAQHGLGETAITVFRELIS-----TGLKPDEVTFVGVLCACGHSGLIEEGKKLFESM 262
Query: 352 IDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQ 411
+ Y IKP HY CM +L EEA ++++KMP + + S++W +LLS CR
Sbjct: 263 FNAYGIKPQMEHYGCMVDLLGRYGCLEEAYDLVQKMPFEAN-----SVIWRALLSACRTH 317
Query: 412 GAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRL 471
G V + E + ++M+ Q +RY L N+ A A QWE+ +VR++M+ + + PG
Sbjct: 318 GNVKIGEIAGQKLLEMEAQHGARYVLLSNILADANQWEEARQVRKVMEDHGIRKPPGWSY 377
Query: 472 VDLKEVVEKL 481
++L + +
Sbjct: 378 IELGGAIHRF 387
Score = 100 bits (249), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 59/205 (28%), Positives = 100/205 (48%), Gaps = 10/205 (4%)
Query: 187 WNIMISGYSKSGNPGCSLKLFREMMKSGFR-GNDKTMASVLTACGRSARFNEGRSVHGYT 245
WN MI GYS+S NP ++ L+ M+ G N+ T +L +C R + G VH +
Sbjct: 2 WNTMIRGYSRSDNPREAIVLYMSMIAKGIAPPNNFTFPFLLNSCARLSSLEPGHEVHSHI 61
Query: 246 VRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGI 305
++ + ++ + ALI LYS + +A+ +FD R+LV +N MI G+ +PE +
Sbjct: 62 IKHGFESDLFVRNALIHLYSVFGNLNLARTLFDESLVRDLVSYNTMIKGYAEVNQPESAL 121
Query: 306 KLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYW 365
LF + N DE+T + V+ AC R G++ + Q I+ N
Sbjct: 122 CLFGEMQNS---------DEVTLVAVLSACARLGAFDLGKRLYHQYIENGVFNQNTILTA 172
Query: 366 CMANLYAGAELTEEAEEILRKMPED 390
+ ++YA + A EI R++ ++
Sbjct: 173 AVMDMYAKCGSIDSALEIFRRVGKN 197
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 40/191 (20%), Positives = 93/191 (48%), Gaps = 13/191 (6%)
Query: 12 ITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCI--NNPGTFCVNAVIKAYSNSCVPD 69
I +G+F N+ T ++ A GS D + +F+ + N F N++I + + +
Sbjct: 159 IENGVFNQNTILTAAVMDMYAKCGSIDSALEIFRRVGKNMKTGFVFNSMIAGLAQHGLGE 218
Query: 70 QGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERG-GMCHGLALKNGVDFELPVMNSL 128
+ + ++I G P+ TFV + +C +G +E G + + G+ ++ +
Sbjct: 219 TAITVFRELISTGLKPDEVTFVGVLCACGHSGLIEEGKKLFESMFNAYGIKPQMEHYGCM 278
Query: 129 INMYGCFGAMDCARNMFVQMS-PRDLISWNSIVS-----GHVRSGDMSAAHELFDIMPE- 181
+++ G +G ++ A ++ +M + + W +++S G+V+ G++ A +L ++ +
Sbjct: 279 VDLLGRYGCLEEAYDLVQKMPFEANSVIWRALLSACRTHGNVKIGEI-AGQKLLEMEAQH 337
Query: 182 --RNVVSWNIM 190
R V+ NI+
Sbjct: 338 GARYVLLSNIL 348
>gi|58743498|gb|AAW81739.1| Putative Putative Pentatricopeptide (PPR) repeat-containing protein
[Brassica oleracea]
Length = 968
Score = 239 bits (610), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 143/493 (29%), Positives = 240/493 (48%), Gaps = 40/493 (8%)
Query: 1 MKQLLQIQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIK 60
+ L ++ + + NN + A GS Y VF I + NA+I
Sbjct: 408 LPNLKELHCYSLKQEFVHNNELVANAFVASYAKCGSLSYAHRVFCSIRSKTVNSWNALIG 467
Query: 61 AYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDF 120
YS S P + Y QM +G +P+ +T SL +C++ ++ G HGL ++N ++
Sbjct: 468 GYSQSSDPRLSLDAYFQMKSSGLLPDLFTVCSLLSACSQIKSLKLGKEVHGLIIRNRLE- 526
Query: 121 ELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMP 180
RD + S++S ++ G++S AH LFD M
Sbjct: 527 ------------------------------RDSFVYISLLSLYIHCGELSTAHVLFDAME 556
Query: 181 ERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRS 240
++ +VSWN M++GY ++G P +L LFR+M+ G + + +M SV AC GR
Sbjct: 557 DKTLVSWNTMVNGYLQNGFPERALSLFRQMVLYGVQPCEISMMSVFGACSLLPSLRLGRE 616
Query: 241 VHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGK 300
HGY ++ L+ N + ++ID+Y+K V + +VF+ + +R++ WNAM++G+ IHG+
Sbjct: 617 AHGYALKCLLEDNAFIACSVIDMYAKNGSVMESFKVFNGLKERSVASWNAMVMGYGIHGR 676
Query: 301 PEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPN 360
+E IKLF + PDE+TF+GV+ AC + L+ EG Y QM + + P
Sbjct: 677 AKEAIKLFEEMQR-----TGHCPDELTFLGVLTACNHSGLVHEGLTYLDQMKTLFGMNPT 731
Query: 361 FAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERL 420
HY C+ ++ A +EA +I + + + +W LLS CR + M E++
Sbjct: 732 LKHYACVIDMLVRAGKLDEALKIATEEMSEEPGVG----IWNFLLSSCRIHKNLEMGEKI 787
Query: 421 AKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLKEVVEK 480
A +P+ Y L N+YA +G+W++V +VR+ MK+ + + GC ++L V
Sbjct: 788 AAKLFVSEPEKPENYVLLSNLYAGSGKWDEVRKVRQRMKEMSLRKDAGCSWIELNGKVFS 847
Query: 481 LKVGHFWRGGMKE 493
G G +E
Sbjct: 848 FVAGESSLDGFEE 860
Score = 148 bits (373), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 96/334 (28%), Positives = 159/334 (47%), Gaps = 44/334 (13%)
Query: 35 GSPDYTVLVFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMI-KNGFMPNSYTFVSL 93
GSPD + VF + F NAVI +YS + + + +++MI ++G +P+++TF +
Sbjct: 131 GSPDDSRSVFDALRKKNLFQWNAVISSYSRNELYHNVLEMFVKMITESGLLPDNFTFPCV 190
Query: 94 FGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDL 153
+CA V+ G HGL +K + ++ V N+L++ YG
Sbjct: 191 VKACAGVSEVQVGLAVHGLVVKTRLVEDVFVSNALVSFYGT------------------- 231
Query: 154 ISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKS 213
+G +S A +F IMPERN+VSWN MI +S +G L +MM+
Sbjct: 232 ------------NGSVSDALRVFKIMPERNLVSWNSMIRVFSDNGLSEECFLLLGQMMEK 279
Query: 214 ----GFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQK 269
F + T+A+VL C R G+ VHG ++ SL ++++ AL+D+YSKC
Sbjct: 280 DDEIAFTPDVATLATVLPVCARDREIGVGKGVHGLAMKLSLDKEVVVNNALMDMYSKCGC 339
Query: 270 VEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFI 329
+ AQ +F ++N+V WN M+ G G + L ++ G GG + DE+T +
Sbjct: 340 INDAQVIFKLNNNKNVVSWNTMVGGFSAAGDIHKTFDLLRQMLAG---GGDLRADEVTIL 396
Query: 330 GVICACVRAELLTEGRKYFRQMIDFYKIKPNFAH 363
+ C +L ++ + Y +K F H
Sbjct: 397 NAVPVCFEESVLPNLKE-----LHCYSLKQEFVH 425
Score = 119 bits (298), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 93/302 (30%), Positives = 151/302 (50%), Gaps = 24/302 (7%)
Query: 56 NAVIKAYSN-SCVPDQGVVFYLQMIKNGFMPNSYTF-VSLFGSCAKTGCVERGGMCHGLA 113
NA++ YS C+ D V+F L KN N+ S G KT + R + G
Sbjct: 328 NALMDMYSKCGCINDAQVIFKLNNNKNVVSWNTMVGGFSAAGDIHKTFDLLRQMLAGGGD 387
Query: 114 LK-------NGVD--FELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHV 164
L+ N V FE V+ +L ++ C+ + FV + +L++ N+ V+ +
Sbjct: 388 LRADEVTILNAVPVCFEESVLPNLKELH-CYSL----KQEFVHNN--ELVA-NAFVASYA 439
Query: 165 RSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMAS 224
+ G +S AH +F + + V SWN +I GYS+S +P SL + +M SG + T+ S
Sbjct: 440 KCGSLSYAHRVFCSIRSKTVNSWNALIGGYSQSSDPRLSLDAYFQMKSSGLLPDLFTVCS 499
Query: 225 VLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRN 284
+L+AC + G+ VHG +R L+ + + +L+ LY C ++ A +FD+M D+
Sbjct: 500 LLSACSQIKSLKLGKEVHGLIIRNRLERDSFVYISLLSLYIHCGELSTAHVLFDAMEDKT 559
Query: 285 LVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEG 344
LV WN M+ G+ +G PE + LF +V + G + P EI+ + V AC L G
Sbjct: 560 LVSWNTMVNGYLQNGFPERALSLFRQMV---LYG--VQPCEISMMSVFGACSLLPSLRLG 614
Query: 345 RK 346
R+
Sbjct: 615 RE 616
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 55/190 (28%), Positives = 94/190 (49%), Gaps = 6/190 (3%)
Query: 159 IVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMM-KSGFRG 217
+++ + G + +FD + ++N+ WN +IS YS++ L++F +M+ +SG
Sbjct: 123 VITMYSMCGSPDDSRSVFDALRKKNLFQWNAVISSYSRNELYHNVLEMFVKMITESGLLP 182
Query: 218 NDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVF 277
++ T V+ AC + G +VHG V+T L ++ + AL+ Y V A RVF
Sbjct: 183 DNFTFPCVVKACAGVSEVQVGLAVHGLVVKTRLVEDVFVSNALVSFYGTNGSVSDALRVF 242
Query: 278 DSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALV--NGTVAGGSISPDEITFIGVICAC 335
M +RNLV WN+MI +G EE L ++ + +A +PD T V+ C
Sbjct: 243 KIMPERNLVSWNSMIRVFSDNGLSEECFLLLGQMMEKDDEIA---FTPDVATLATVLPVC 299
Query: 336 VRAELLTEGR 345
R + G+
Sbjct: 300 ARDREIGVGK 309
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 57/244 (23%), Positives = 102/244 (41%), Gaps = 42/244 (17%)
Query: 191 ISGYSKSGNPGCS-LKLFREMMKS------GFRGNDKTMASVLTACGRSARFNEGRSVHG 243
+SG ++GNP L++ E + F + + +L A GR GR +H
Sbjct: 46 VSGLCETGNPPQGVLQVIEEFDREEKSSSDAFLLLREALGLLLQASGRRKDIQLGRKIHQ 105
Query: 244 YTVRTS-LKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPE 302
++ L + +L T +I +YS C + ++ VFD++ +NL WNA+I + +
Sbjct: 106 LVSESARLSNDDVLCTRVITMYSMCGSPDDSRSVFDALRKKNLFQWNAVISSYSRNELYH 165
Query: 303 EGIKLFTALVNGTVAGGSISPDEITFIGVICAC---------------VRAELLTEGRKY 347
+++F ++ + + PD TF V+ AC V L E
Sbjct: 166 NVLEMFVKMITES----GLLPDNFTFPCVVKACAGVSEVQVGLAVHGLVVKTRLVEDVFV 221
Query: 348 FRQMIDFY-------------KIKP--NFAHYWCMANLYAGAELTEEAEEILRKMPEDND 392
++ FY KI P N + M +++ L+EE +L +M E +D
Sbjct: 222 SNALVSFYGTNGSVSDALRVFKIMPERNLVSWNSMIRVFSDNGLSEECFLLLGQMMEKDD 281
Query: 393 NMSF 396
++F
Sbjct: 282 EIAF 285
>gi|357153087|ref|XP_003576334.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g18840-like [Brachypodium distachyon]
Length = 531
Score = 239 bits (610), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 147/493 (29%), Positives = 231/493 (46%), Gaps = 57/493 (11%)
Query: 6 QIQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSNS 65
Q+ A L GL + +F LL + +L+ + + I A ++S
Sbjct: 33 QLHAVLFKHGLLHHPAFLRA-LLSRLPPSSASTLALLLSAAPSALSPPLYSPAISALASS 91
Query: 66 CVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKT------------GCVERGGMCHGLA 113
P + + ++ + F +L SCA+ G V +G HG
Sbjct: 92 PCPAASLAVFNRVSRLSLPTPLPAFPALLKSCARAFGLCAAADGGGEGFVSKGMELHGRV 151
Query: 114 LKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGH---------- 163
LK G + V N+L++MYG G + AR +F M R+ +SWN++V+ H
Sbjct: 152 LKLGCGGDRYVQNALVSMYGKLGRLGDARKVFDGMPARNAVSWNALVAAHGATGDLHGVE 211
Query: 164 ---------------------VRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGC 202
R GDM AA +F MP R+ VSWN +I GY+K G
Sbjct: 212 LLSREMPERSVSWWNAEITRHARVGDMEAAARVFREMPGRDAVSWNSLIGGYTKLGRYVQ 271
Query: 203 SLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALID 262
+L++FREM SG + T+ SVL AC G+ VHGY + + + AL+D
Sbjct: 272 ALEVFREMQDSGVEPTELTLVSVLGACAEIGELELGKGVHGYIGSKGVVADGYVGNALVD 331
Query: 263 LYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSIS 322
+Y+KC +E+A+++F+SM+ R++ CWNAMI+G +HG + ++LF A+ +
Sbjct: 332 MYAKCGSLELARQLFESMSTRDITCWNAMIVGFSVHGYSRKALELFDAM--------RVE 383
Query: 323 PDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEE 382
PD +TF+GV+ AC L+ EGR YFR M + YKI P HY CM ++ EA +
Sbjct: 384 PDHVTFLGVLIACSHGGLVDEGRVYFRSMTEDYKIVPGVKHYGCMVDMLCRCGKVAEAYQ 443
Query: 383 ILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVY 442
++ MP + ++W +L+ CR G + + + + P D + NVY
Sbjct: 444 MINHMP-----VKANCVLWKMVLAACRVHGHIDLANKAFHELHQLMPIDDGDVITVSNVY 498
Query: 443 AVAGQWEDVARVR 455
A A +W+ V +R
Sbjct: 499 AEAKRWDVVEHLR 511
>gi|359476124|ref|XP_002282605.2| PREDICTED: pentatricopeptide repeat-containing protein
At4g21065-like [Vitis vinifera]
gi|296082021|emb|CBI21026.3| unnamed protein product [Vitis vinifera]
Length = 583
Score = 239 bits (610), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 143/488 (29%), Positives = 239/488 (48%), Gaps = 45/488 (9%)
Query: 1 MKQLLQIQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTV-LVFKCINNP--GTFCVNA 57
+ +L Q+ H+I G F NN S++ + Y + LVF + F +
Sbjct: 20 LPKLAQLHTHIIKLG-FQNNPLVLTKFTSASSNLDAIPYAMSLVFSVEDARVYDAFLFST 78
Query: 58 VIKAYSNSCVPDQGVVFYLQ-MIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKN 116
+I+AY+ S +FY M+ G PN Y F + +CA + G HG +K
Sbjct: 79 IIRAYAESSQSKHNAIFYYNLMLGYGISPNKYAFPFVLKACAGLRDLNLGKAVHGSLVKF 138
Query: 117 GVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELF 176
G D ++ V N++++MY C C SG M A +LF
Sbjct: 139 GFDDDIFVQNTMVHMYCC-----C-------------------------SGGMEFARKLF 168
Query: 177 DIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFN 236
D MP+ + V+W MI GY++ G ++ LFR+M +G +D TM SVL+AC
Sbjct: 169 DEMPKLDPVTWTAMIGGYARLGQSAGAVGLFRKMQIAGVCPDDVTMVSVLSACTDLGALE 228
Query: 237 EGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHC 296
G+ + Y + + + L AL+D+++KC V+ A +F +M+ R +V W ++I+G
Sbjct: 229 LGKWIESYIEKERVLKTVELSNALVDMFAKCGDVDKALGLFRNMSKRTIVSWTSVIVGLA 288
Query: 297 IHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYK 356
+HG+ E + LF + + P++I FIG++ AC + L+ GR+YF +M +
Sbjct: 289 MHGRGLEAVSLFEEM-----KASGMVPEDIAFIGLLSACSHSGLVERGRQYFSEMTRQFG 343
Query: 357 IKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAM 416
I P HY CM +L + A L EA E + +MP + + I+W +L+S CR G + +
Sbjct: 344 IVPKIEHYGCMVDLLSRAGLVTEALEFVERMPIEPN-----PIIWRTLISACRVHGELKL 398
Query: 417 VERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLKE 476
E ++K + +P S Y L N+Y WE +++R M K+ + ++PG +++L
Sbjct: 399 GESISKQLIRNEPMHESNYVLLSNIYGKMLDWEKKSKIRVAMGKKGIQKVPGSTMIELDN 458
Query: 477 VVEKLKVG 484
+ + VG
Sbjct: 459 EIHEFIVG 466
>gi|297739711|emb|CBI29893.3| unnamed protein product [Vitis vinifera]
Length = 784
Score = 239 bits (610), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 133/426 (31%), Positives = 221/426 (51%), Gaps = 45/426 (10%)
Query: 56 NAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALK 115
A+I YS + + +++M+ +G PN +TF ++ SC + + G H L +K
Sbjct: 80 TAMISGYSQRGYASEALHLFVEMLMSGTAPNEFTFATVLTSCTSSSGFQLGRQIHSLVIK 139
Query: 116 NGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHEL 175
+ + V +SL++MY ++G + A +
Sbjct: 140 TSFESHIFVGSSLLDMYA-------------------------------KAGKICEARRV 168
Query: 176 FDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARF 235
FD +PER+VVS +ISGY++ G +L LFR + + G R N T ASVLTA A
Sbjct: 169 FDGLPERDVVSCTAIISGYAQLGLDEEALDLFRRLQREGMRSNYVTYASVLTALSGLAAL 228
Query: 236 NEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGH 295
+ GR VH + +R L ++L +LID+YSKC + ++R+FDSM +R ++ WNAM++G+
Sbjct: 229 DHGRQVHSHVLRAKLPFYVVLQNSLIDMYSKCGSLTYSRRIFDSMPERTVISWNAMLVGY 288
Query: 296 CIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFY 355
HG E ++LF + + PD +TF+ V+ C + G + F +M++
Sbjct: 289 SKHGLGREAVELFKLMKEEN----KVKPDSVTFLAVLSGCSHGGMEDRGLEIFYEMVNQK 344
Query: 356 K-IKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFE--SIMWVSLLSLCRFQG 412
+P HY C+ +L+ A EEA E ++KMP FE + +W SLL CR
Sbjct: 345 DGFEPEIEHYGCVVDLFGRAGRVEEAFEFIKKMP-------FEPTAAIWGSLLGACRVHQ 397
Query: 413 AVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLV 472
V + E +A+ ++++ ++ Y L N+YA AG+W+DV VRELMK++ + + PG +
Sbjct: 398 NVHIGEFVARRLLEIESENAGNYVILSNLYASAGRWDDVRTVRELMKEKAVIKEPGRSWI 457
Query: 473 DLKEVV 478
+L + +
Sbjct: 458 ELDQTL 463
Score = 128 bits (322), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 97/328 (29%), Positives = 158/328 (48%), Gaps = 48/328 (14%)
Query: 169 MSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTA 228
+ A + D MPERNVVSW MISGYS+ G +L LF EM+ SG N+ T A+VLT+
Sbjct: 61 LGDARRVLDEMPERNVVSWTAMISGYSQRGYASEALHLFVEMLMSGTAPNEFTFATVLTS 120
Query: 229 CGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCW 288
C S+ F GR +H ++TS + +I + ++L+D+Y+K K+ A+RVFD + +R++V
Sbjct: 121 CTSSSGFQLGRQIHSLVIKTSFESHIFVGSSLLDMYAKAGKICEARRVFDGLPERDVVSC 180
Query: 289 NAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRK-- 346
A+I G+ G EE + LF L + + +T+ V+ A L GR+
Sbjct: 181 TAIISGYAQLGLDEEALDLFRRLQR-----EGMRSNYVTYASVLTALSGLAALDHGRQVH 235
Query: 347 --YFRQMIDFYKIKPN--------------------------FAHYWCMANLYAGAELTE 378
R + FY + N + M Y+ L
Sbjct: 236 SHVLRAKLPFYVVLQNSLIDMYSKCGSLTYSRRIFDSMPERTVISWNAMLVGYSKHGLGR 295
Query: 379 EAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQ------DF 432
EA E+ + M E+N + +S+ ++++LS C G M +R + F +M Q +
Sbjct: 296 EAVELFKLMKEEN-KVKPDSVTFLAVLSGCSHGG---MEDRGLEIFYEMVNQKDGFEPEI 351
Query: 433 SRYQFLLNVYAVAGQWEDVARVRELMKK 460
Y +++++ AG+ E+ E +KK
Sbjct: 352 EHYGCVVDLFGRAGRVEEAF---EFIKK 376
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 62/182 (34%), Positives = 94/182 (51%), Gaps = 20/182 (10%)
Query: 215 FRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQ 274
F+G D SVLT C EG+ VH + ++T +P + L T LI LY+KC+ + A+
Sbjct: 10 FQGYD----SVLTECISQTAIREGQRVHAHMIKTCYEPPVYLRTRLIVLYNKCRCLGDAR 65
Query: 275 RVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTA-LVNGTVAGGSISPDEITFIGVIC 333
RV D M +RN+V W AMI G+ G E + LF L++GT +P+E TF V+
Sbjct: 66 RVLDEMPERNVVSWTAMISGYSQRGYASEALHLFVEMLMSGT------APNEFTFATVLT 119
Query: 334 ACVRAELLTEGRKYFRQMIDFYKIKPNF-AHYWC---MANLYAGAELTEEAEEILRKMPE 389
+C + GR+ I IK +F +H + + ++YA A EA + +PE
Sbjct: 120 SCTSSSGFQLGRQ-----IHSLVIKTSFESHIFVGSSLLDMYAKAGKICEARRVFDGLPE 174
Query: 390 DN 391
+
Sbjct: 175 RD 176
Score = 86.7 bits (213), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 63/240 (26%), Positives = 112/240 (46%), Gaps = 8/240 (3%)
Query: 6 QIQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSNS 65
QI + +I + F ++ F +LL A G VF + A+I Y+
Sbjct: 132 QIHSLVIKTS-FESHIFVGSSLLDMYAKAGKICEARRVFDGLPERDVVSCTAIISGYAQL 190
Query: 66 CVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVM 125
+ ++ + + ++ + G N T+ S+ + + ++ G H L+ + F + +
Sbjct: 191 GLDEEALDLFRRLQREGMRSNYVTYASVLTALSGLAALDHGRQVHSHVLRAKLPFYVVLQ 250
Query: 126 NSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERN-- 183
NSLI+MY G++ +R +F M R +ISWN+++ G+ + G A ELF +M E N
Sbjct: 251 NSLIDMYSKCGSLTYSRRIFDSMPERTVISWNAMLVGYSKHGLGREAVELFKLMKEENKV 310
Query: 184 ---VVSWNIMISGYSKSGNPGCSLKLFREMM--KSGFRGNDKTMASVLTACGRSARFNEG 238
V++ ++SG S G L++F EM+ K GF + V+ GR+ R E
Sbjct: 311 KPDSVTFLAVLSGCSHGGMEDRGLEIFYEMVNQKDGFEPEIEHYGCVVDLFGRAGRVEEA 370
>gi|449527549|ref|XP_004170773.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Cucumis sativus]
Length = 487
Score = 239 bits (610), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 148/473 (31%), Positives = 247/473 (52%), Gaps = 24/473 (5%)
Query: 1 MKQLLQIQAHLITSGLFFNNSFWTINLLKHSADFGSP-----DYTVLVFKCINNPGTFCV 55
++ L QI AHL+ + L + + LL+ +A G Y +FK + F
Sbjct: 20 VQHLKQIHAHLLMTYLP-QSPYAIAPLLEVAATSGCDRDSFFSYACGIFKNLQQRNIFMY 78
Query: 56 NAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVER-----GGMCH 110
N++I+ Y S P Q ++ YL ++ GF+ N YTF L +CA V R G + H
Sbjct: 79 NSMIRGYFLSRFPKQAILCYLDLMDRGFLANKYTFPPLIKACA---LVYRELKRIGYLVH 135
Query: 111 GLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMS 170
+ G + + V+++L+ Y F + AR +F + S +D++ W +V G+ + GD+
Sbjct: 136 AHVIVLGYENDAFVVSALVEFYSLFD-LKVARVLFDKSSGKDVVVWTVMVDGYGKVGDIE 194
Query: 171 AAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACG 230
+A LFD MPERNV+SW+ M++ YS+ + L LFR+M K ND + SVLTAC
Sbjct: 195 SARVLFDEMPERNVISWSAMMAAYSRVSDFREVLCLFRQMQKKNIVPNDSVIVSVLTACA 254
Query: 231 RSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNA 290
+G +H Y R L N IL TAL+D+YSKC +E A VF+ +++++ WNA
Sbjct: 255 HLGAITQGLWMHSYAKRYGLDSNPILATALVDMYSKCGYIESALEVFEGISNKDAGAWNA 314
Query: 291 MILGHCIHGKPEEGIKLFTALV-NGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFR 349
MI G + G + ++LF ++ +GT A E TF+ ++ AC A+++ G ++F
Sbjct: 315 MISGFAMTGNVVKSLELFDKMIASGTQA------TEATFVSILAACTHAKMVERGLEFFD 368
Query: 350 QMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCR 409
QM Y+++P F HY C+ +L A A + E+AE+ + + N+ ++ +W ++LS CR
Sbjct: 369 QMYPVYRVQPQFEHYACVVDLMARAGMVEDAEKFVEEKMGGFSNV--DANVWGAILSACR 426
Query: 410 FQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRR 462
+ + +R+ + D N+++ AG+ VR+ + R
Sbjct: 427 QYRNIEIGDRIWTKLSALGLLDGGTQVLSYNIFSEAGREMAAKEVRKKFSEAR 479
>gi|242049708|ref|XP_002462598.1| hypothetical protein SORBIDRAFT_02g028755 [Sorghum bicolor]
gi|241925975|gb|EER99119.1| hypothetical protein SORBIDRAFT_02g028755 [Sorghum bicolor]
Length = 655
Score = 239 bits (610), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 134/397 (33%), Positives = 209/397 (52%), Gaps = 13/397 (3%)
Query: 75 YLQMIKN-GFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYG 133
Y+QM+ G + V L +CA+ + G H + LKNG D V +L++ YG
Sbjct: 264 YVQMVGEVGANDHEVLLVDLMKACARYSAITEGQQLHTVILKNGFDAHAFVQATLVHFYG 323
Query: 134 CFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISG 193
C G + A+ F SWN++++ +R G + A ELFD MPER+ VSW+ MISG
Sbjct: 324 CCGLIGLAQMAFKLSDKSHTASWNALLAALLRKGLIHEARELFDDMPERDTVSWSTMISG 383
Query: 194 YSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPN 253
Y ++G +L+LF M+ + N+ T+AS L+A S ++G+ +H + + ++
Sbjct: 384 YVQTGRSDMALELFYSMLNTSVEPNEVTLASALSAIADSGTLDQGKWIHDHIMNRPIQLT 443
Query: 254 IILDTALIDLYSKCQKVEVAQRVFDSMADR--NLVCWNAMILGHCIHGKPEEGIKLFTAL 311
L LID+Y+K V A + F+ +D+ ++ WNAMI IHG + LF+ L
Sbjct: 444 DNLSAGLIDMYAKRGSVADAVQFFNCASDKFSSVSPWNAMICSLAIHGYAHMSLDLFSQL 503
Query: 312 VNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLY 371
SI P+ ITFIGV+ AC ++ +G+ YF M Y I+P HY CM +L
Sbjct: 504 QR-----TSIKPNSITFIGVLSACCHTGMVAKGKYYFEAMTREYGIQPTIKHYGCMVDLL 558
Query: 372 AGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQD 431
A EEAE+++ MP M + ++W S+LS R QG +A+ E+ A+ +D
Sbjct: 559 GRAGYLEEAEQLVSMMP-----MKADVVIWGSILSAARAQGNIALGEKAAEELAKLDQTH 613
Query: 432 FSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPG 468
+ L N+YA AG W +V+ VR+ ++ R+ G
Sbjct: 614 GASKVALSNIYADAGHWTNVSVVRKELQDENFERLVG 650
Score = 122 bits (307), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 75/320 (23%), Positives = 148/320 (46%), Gaps = 37/320 (11%)
Query: 58 VIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNG 117
++ A + + + V + M+ +PN T + A+ G GM HG ALK
Sbjct: 115 LVTALARAGHAGRAVAVFRGMLSENVVPNEVTLAGAIMAFARCGAPATVGMIHGFALKRA 174
Query: 118 VDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFD 177
+D + V +L++ Y + AR MF M+ R+ ++WN++++G+V++ + A E+F
Sbjct: 175 LDGFVIVATNLVHAYAGVLELYSARAMFDGMTHRNAVTWNAMLNGYVKAEMIDMAAEVFW 234
Query: 178 IMPERNVVSWNIMISGYSKSGNPGCSLKLFREMM-KSGFRGNDKTMASVLTACGRSARFN 236
+PER+ VSW +I GY + ++K + +M+ + G ++ + ++ AC R +
Sbjct: 235 RIPERDEVSWLTLIDGYICADLISDAMKAYVQMVGEVGANDHEVLLVDLMKACARYSAIT 294
Query: 237 EGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQ---------------------- 274
EG+ +H ++ + + L+ Y C + +AQ
Sbjct: 295 EGQQLHTVILKNGFDAHAFVQATLVHFYGCCGLIGLAQMAFKLSDKSHTASWNALLAALL 354
Query: 275 ---------RVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDE 325
+FD M +R+ V W+ MI G+ G+ + ++LF +++N S+ P+E
Sbjct: 355 RKGLIHEARELFDDMPERDTVSWSTMISGYVQTGRSDMALELFYSMLN-----TSVEPNE 409
Query: 326 ITFIGVICACVRAELLTEGR 345
+T + A + L +G+
Sbjct: 410 VTLASALSAIADSGTLDQGK 429
Score = 95.1 bits (235), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 66/266 (24%), Positives = 130/266 (48%), Gaps = 15/266 (5%)
Query: 93 LFGSCAKTGCVERGGMCHGLALKNGV-DFELPVMNSLINMYGCF-GAMDCARNMFVQMSP 150
L S + + G H LA K+G+ V NS+++ Y ++ A +F +
Sbjct: 12 LVASLKRAARLRCGEQLHALAAKSGLLACNAFVRNSVLSFYSRLPSSLASALQLFDETPA 71
Query: 151 --RDLISWNSIVSGHVRSGDMSAAHELFDIMP--ERNVVSWNIMISGYSKSGNPGCSLKL 206
RD + NS+++ R+G + A L D MP R+ VS+ +++ +++G+ G ++ +
Sbjct: 72 PLRDTAARNSVLAALTRAGHLDRAQRLLDEMPRVHRDAVSYTTLVTALARAGHAGRAVAV 131
Query: 207 FREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSK 266
FR M+ N+ T+A + A R +HG+ ++ +L +I+ T L+ Y+
Sbjct: 132 FRGMLSENVVPNEVTLAGAIMAFARCGAPATVGMIHGFALKRALDGFVIVATNLVHAYAG 191
Query: 267 CQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEI 326
++ A+ +FD M RN V WNAM+ G+ + ++F + DE+
Sbjct: 192 VLELYSARAMFDGMTHRNAVTWNAMLNGYVKAEMIDMAAEVFWRIPE---------RDEV 242
Query: 327 TFIGVICACVRAELLTEGRKYFRQMI 352
+++ +I + A+L+++ K + QM+
Sbjct: 243 SWLTLIDGYICADLISDAMKAYVQMV 268
Score = 41.2 bits (95), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 40/178 (22%), Positives = 78/178 (43%), Gaps = 11/178 (6%)
Query: 7 IQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCV--NAVIKAYSN 64
I H++ + ++ + L+ A GS V F C ++ + NA+I + +
Sbjct: 431 IHDHIMNRPIQLTDNL-SAGLIDMYAKRGSVADAVQFFNCASDKFSSVSPWNAMICSLAI 489
Query: 65 SCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMC-HGLALKNGVDFELP 123
+ + Q+ + PNS TF+ + +C TG V +G + + G+ +
Sbjct: 490 HGYAHMSLDLFSQLQRTSIKPNSITFIGVLSACCHTGMVAKGKYYFEAMTREYGIQPTIK 549
Query: 124 VMNSLINMYGCFGAMDCARNMFVQMSP--RDLISWNSIVSGHVRSGDMS----AAHEL 175
++++ G G ++ A + V M P D++ W SI+S G+++ AA EL
Sbjct: 550 HYGCMVDLLGRAGYLEEAEQL-VSMMPMKADVVIWGSILSAARAQGNIALGEKAAEEL 606
>gi|356568696|ref|XP_003552546.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g29230-like [Glycine max]
Length = 604
Score = 239 bits (610), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 156/510 (30%), Positives = 240/510 (47%), Gaps = 76/510 (14%)
Query: 40 TVLVFKCINNPGTFCVNAVIKAYS-NSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCA 98
V VF + +P N++I+A++ NS + QM KNG P+++T+ L +C+
Sbjct: 72 AVNVFNHVPHPNVHLYNSIIRAHAHNSSHRSLPFNAFFQMQKNGLFPDNFTYPFLLKACS 131
Query: 99 KTGCVERGGMCHGLALKNGVDFELPVMNSLINMY------GCFGAMDC------------ 140
+ M H K G ++ V NSLI+ Y G GAM
Sbjct: 132 GPSSLPLVRMIHAHVEKIGFYGDIFVPNSLIDSYSRCGNAGLDGAMSLFLAMEERDVVTW 191
Query: 141 ---------------ARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVV 185
A +F +M RD++SWN+++ G+ ++G+M A ELF+ MP RN+V
Sbjct: 192 NSMIGGLVRCGELQGACKLFDEMPDRDMVSWNTMLDGYAKAGEMDTAFELFERMPWRNIV 251
Query: 186 SWNIMISGYSKSGN--------PGCSLK-----------------------LFREMMKSG 214
SW+ M+ GYSK G+ C +K L+ +M ++G
Sbjct: 252 SWSTMVCGYSKGGDMDMARMLFDRCPVKNVVLWTTIIAGYAEKGLAREATELYGKMEEAG 311
Query: 215 FRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQ 274
R +D + S+L AC S G+ +H R + + A ID+Y+KC ++ A
Sbjct: 312 MRPDDGFLLSILAACAESGMLGLGKRIHASMRRWRFRCGAKVLNAFIDMYAKCGCLDAAF 371
Query: 275 RVFDS-MADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVIC 333
VF MA +++V WN+MI G +HG E+ ++LF+ +V PD TF+G++C
Sbjct: 372 DVFSGMMAKKDVVSWNSMIQGFAMHGHGEKALELFSWMVQ-----EGFEPDTYTFVGLLC 426
Query: 334 ACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDN 393
AC A L+ EGRKYF M Y I P HY CM +L +EA +LR MP
Sbjct: 427 ACTHAGLVNEGRKYFYSMEKVYGIVPQVEHYGCMMDLLGRGGHLKEAFMLLRSMP----- 481
Query: 394 MSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVAR 453
M +I+ +LL+ CR V + + + ++P D Y L N+YA AG W +VA
Sbjct: 482 MEPNAIILGTLLNACRMHNDVDLARAVCEQLFKLEPSDPGNYSLLSNIYAQAGDWMNVAN 541
Query: 454 VRELMKKRRMGRMPGCRLVDLKEVVEKLKV 483
VR MK + G ++++E V + V
Sbjct: 542 VRLQMKNTGGEKPSGASSIEVEEEVHEFTV 571
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 65/298 (21%), Positives = 127/298 (42%), Gaps = 32/298 (10%)
Query: 151 RDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYS-KSGNPGCSLKLFRE 209
+DL +++ +++A +F+ +P NV +N +I ++ S + F +
Sbjct: 51 QDLFVAPKLIAAFSLCRHLASAVNVFNHVPHPNVHLYNSIIRAHAHNSSHRSLPFNAFFQ 110
Query: 210 MMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQK 269
M K+G ++ T +L AC + R +H + + +I + +LID YS+C
Sbjct: 111 MQKNGLFPDNFTYPFLLKACSGPSSLPLVRMIHAHVEKIGFYGDIFVPNSLIDSYSRCGN 170
Query: 270 --VEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLF-----------TALVNGTV 316
++ A +F +M +R++V WN+MI G G+ + KLF +++G
Sbjct: 171 AGLDGAMSLFLAMEERDVVTWNSMIGGLVRCGELQGACKLFDEMPDRDMVSWNTMLDGYA 230
Query: 317 AGGSISP-----------DEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYW 365
G + + +++ ++C + + R F D +K N +
Sbjct: 231 KAGEMDTAFELFERMPWRNIVSWSTMVCGYSKGGDMDMARMLF----DRCPVK-NVVLWT 285
Query: 366 CMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKS 423
+ YA L EA E+ KM E M + +S+L+ C G + + +R+ S
Sbjct: 286 TIIAGYAEKGLAREATELYGKMEE--AGMRPDDGFLLSILAACAESGMLGLGKRIHAS 341
>gi|356515320|ref|XP_003526349.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g11290-like [Glycine max]
Length = 816
Score = 239 bits (610), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 139/450 (30%), Positives = 226/450 (50%), Gaps = 41/450 (9%)
Query: 35 GSPDYTVLVFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLF 94
GS LVFK +++ N +I Y+ + ++ +L+M+ G P + + +
Sbjct: 292 GSVRSARLVFKGMSSRNVVSWNTMIDGYAQNGESEEAFATFLKMLDEGVEPTNVSMMGAL 351
Query: 95 GSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLI 154
+CA G +ERG H L + + F++ VMNSLI+MY C R
Sbjct: 352 HACANLGDLERGRYVHRLLDEKKIGFDVSVMNSLISMYS-----KCKR------------ 394
Query: 155 SWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSG 214
+ A +F + + VV+WN MI GY+++G +L LF EM
Sbjct: 395 --------------VDIAASVFGNLKHKTVVTWNAMILGYAQNGCVNEALNLFCEMQSHD 440
Query: 215 FRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQ 274
+ + T+ SV+TA + + + +HG +RT + N+ + TALID ++KC ++ A+
Sbjct: 441 IKPDSFTLVSVITALADLSVTRQAKWIHGLAIRTLMDKNVFVCTALIDTHAKCGAIQTAR 500
Query: 275 RVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICA 334
++FD M +R+++ WNAMI G+ +G E + LF + N GS+ P+EITF+ VI A
Sbjct: 501 KLFDLMQERHVITWNAMIDGYGTNGHGREALDLFNEMQN-----GSVKPNEITFLSVIAA 555
Query: 335 CVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNM 394
C + L+ EG YF M + Y ++P HY M +L A ++A + ++ MP +
Sbjct: 556 CSHSGLVEEGMYYFESMKENYGLEPTMDHYGAMVDLLGRAGRLDDAWKFIQDMP-----V 610
Query: 395 SFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARV 454
+ ++L CR V + E+ A D+DP D + L N+YA A W+ VARV
Sbjct: 611 KPGITVLGAMLGACRIHKNVELGEKTADELFDLDPDDGGYHVLLANMYASASMWDKVARV 670
Query: 455 RELMKKRRMGRMPGCRLVDLKEVVEKLKVG 484
R M+K+ + + PGC LV+L+ V G
Sbjct: 671 RTAMEKKGIQKTPGCSLVELRNEVHTFYSG 700
Score = 149 bits (376), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 94/357 (26%), Positives = 167/357 (46%), Gaps = 38/357 (10%)
Query: 1 MKQLLQIQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIK 60
+K+L QI +I +G F+N + L+ F S VF+ + + + ++K
Sbjct: 57 LKELHQILPLIIKNG-FYNEHLFQTKLISLFCKFNSITEAARVFEPVEHKLDVLYHTMLK 115
Query: 61 AYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDF 120
Y+ + V FY +M + MP Y F L + + RG HG+ + NG
Sbjct: 116 GYAKNSTLRDAVRFYERMRCDEVMPVVYDFTYLLQLSGENLDLRRGREIHGMVITNGFQS 175
Query: 121 ELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMP 180
L M +++N+Y + + A+++F+ MP
Sbjct: 176 NLFAMTAVVNLYA-------------------------------KCRQIEDAYKMFERMP 204
Query: 181 ERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRS 240
+R++VSWN +++GY+++G ++++ +M ++G + + T+ SVL A GRS
Sbjct: 205 QRDLVSWNTVVAGYAQNGFARRAVQVVLQMQEAGQKPDSITLVSVLPAVADLKALRIGRS 264
Query: 241 VHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGK 300
+HGY R + + + TA++D Y KC V A+ VF M+ RN+V WN MI G+ +G+
Sbjct: 265 IHGYAFRAGFEYMVNVATAMLDTYFKCGSVRSARLVFKGMSSRNVVSWNTMIDGYAQNGE 324
Query: 301 PEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKI 357
EE F +++ + P ++ +G + AC L GR Y +++D KI
Sbjct: 325 SEEAFATFLKMLD-----EGVEPTNVSMMGALHACANLGDLERGR-YVHRLLDEKKI 375
Score = 126 bits (316), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 79/279 (28%), Positives = 126/279 (45%), Gaps = 36/279 (12%)
Query: 56 NAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALK 115
N V+ Y+ + + V LQM + G P+S T VS+ + A + G HG A +
Sbjct: 212 NTVVAGYAQNGFARRAVQVVLQMQEAGQKPDSITLVSVLPAVADLKALRIGRSIHGYAFR 271
Query: 116 NGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHEL 175
G ++ + V ++++ Y G++ AR +F MS
Sbjct: 272 AGFEYMVNVATAMLDTYFKCGSVRSARLVFKGMS-------------------------- 305
Query: 176 FDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARF 235
RNVVSWN MI GY+++G + F +M+ G + +M L AC
Sbjct: 306 -----SRNVVSWNTMIDGYAQNGESEEAFATFLKMLDEGVEPTNVSMMGALHACANLGDL 360
Query: 236 NEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGH 295
GR VH + ++ + +LI +YSKC++V++A VF ++ + +V WNAMILG+
Sbjct: 361 ERGRYVHRLLDEKKIGFDVSVMNSLISMYSKCKRVDIAASVFGNLKHKTVVTWNAMILGY 420
Query: 296 CIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICA 334
+G E + LF + I PD T + VI A
Sbjct: 421 AQNGCVNEALNLFCEM-----QSHDIKPDSFTLVSVITA 454
Score = 44.7 bits (104), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 55/235 (23%), Positives = 95/235 (40%), Gaps = 30/235 (12%)
Query: 11 LITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSNSCVPDQ 70
L L N F L+ A G+ +F + NA+I Y + +
Sbjct: 470 LAIRTLMDKNVFVCTALIDTHAKCGAIQTARKLFDLMQERHVITWNAMIDGYGTNGHGRE 529
Query: 71 GVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMN---S 127
+ + +M PN TF+S+ +C+ +G VE GM + ++K E P M+ +
Sbjct: 530 ALDLFNEMQNGSVKPNEITFLSVIAACSHSGLVEE-GMYYFESMKENYGLE-PTMDHYGA 587
Query: 128 LINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSG------HVRSGDMSAAHELFDIMPE 181
++++ G G +D A M + I+ + G +V G+ + A ELFD+ P+
Sbjct: 588 MVDLLGRAGRLDDAWKFIQDMPVKPGITVLGAMLGACRIHKNVELGEKT-ADELFDLDPD 646
Query: 182 R---NVVSWNIMIS------------GYSKSG---NPGCSLKLFREMMKSGFRGN 218
+V+ N+ S K G PGCSL R + + + G+
Sbjct: 647 DGGYHVLLANMYASASMWDKVARVRTAMEKKGIQKTPGCSLVELRNEVHTFYSGS 701
>gi|242052493|ref|XP_002455392.1| hypothetical protein SORBIDRAFT_03g010050 [Sorghum bicolor]
gi|241927367|gb|EES00512.1| hypothetical protein SORBIDRAFT_03g010050 [Sorghum bicolor]
Length = 506
Score = 239 bits (610), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 122/376 (32%), Positives = 214/376 (56%), Gaps = 11/376 (2%)
Query: 106 GGMCHGLALKNG-VDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHV 164
G H L L+ G V + V SL+ +Y + AR++F +M+ RD+++WN +++G+V
Sbjct: 97 GPQLHSLLLRTGHVASDTHVSASLVQLYCTCRHVADARSVFHEMAVRDVVAWNVMIAGYV 156
Query: 165 RSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMAS 224
++GD++ A ELFD MPERNVVSW +I GY++ P ++++FR M G + + S
Sbjct: 157 KAGDLAHARELFDAMPERNVVSWTTVIGGYAQMRRPEEAVEVFRRMQVEGIEPDGVALLS 216
Query: 225 VLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRN 284
VL+ACG + G VH + VR L+ I L ++ID+Y KC +E A VF+ M +++
Sbjct: 217 VLSACGDLGAVDLGEWVHRFVVRRGLRQEIPLMNSIIDMYMKCGCIEKAVEVFEGMEEKS 276
Query: 285 LVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEG 344
+V W +I G +HG + +++F + +A P+++TF+ ++ AC L G
Sbjct: 277 VVTWTTLIAGFALHGLGLQAVEMFRRMERENMA-----PNDVTFLAILSACSHVGLTDLG 331
Query: 345 RKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSL 404
R YF M+ Y+IKP HY CM +L A +EA+++++ MP + + +W +L
Sbjct: 332 RWYFNIMVSQYRIKPQVEHYGCMVDLLGRAGCLKEAQDLVKDMP-----LKANAAIWGAL 386
Query: 405 LSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMG 464
L+ R G + E ++++P + Y L N++A +W+DV+++R+ MK+R +
Sbjct: 387 LAASRTHGDADLGEEALVHLIELEPSNSGNYILLSNIFAEQERWDDVSKLRKAMKERGLR 446
Query: 465 RMPGCRLVDLKEVVEK 480
+PG +++ +V +
Sbjct: 447 NVPGASSIEVDGMVHE 462
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 57/260 (21%), Positives = 110/260 (42%), Gaps = 33/260 (12%)
Query: 56 NAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALK 115
VI Y+ P++ V + +M G P+ +S+ +C G V+ G H ++
Sbjct: 180 TTVIGGYAQMRRPEEAVEVFRRMQVEGIEPDGVALLSVLSACGDLGAVDLGEWVHRFVVR 239
Query: 116 NGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHEL 175
G+ E+P+MNS+I+MY G ++ A +F M + +++W +
Sbjct: 240 RGLRQEIPLMNSIIDMYMKCGCIEKAVEVFEGMEEKSVVTWTT----------------- 282
Query: 176 FDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARF 235
+I+G++ G ++++FR M + ND T ++L+AC
Sbjct: 283 --------------LIAGFALHGLGLQAVEMFRRMERENMAPNDVTFLAILSACSHVGLT 328
Query: 236 NEGRSVHGYTV-RTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADR-NLVCWNAMIL 293
+ GR V + +KP + ++DL + ++ AQ + M + N W A++
Sbjct: 329 DLGRWYFNIMVSQYRIKPQVEHYGCMVDLLGRAGCLKEAQDLVKDMPLKANAAIWGALLA 388
Query: 294 GHCIHGKPEEGIKLFTALVN 313
HG + G + L+
Sbjct: 389 ASRTHGDADLGEEALVHLIE 408
>gi|359481919|ref|XP_003632692.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g13770, mitochondrial-like [Vitis vinifera]
Length = 1053
Score = 239 bits (610), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 133/427 (31%), Positives = 221/427 (51%), Gaps = 45/427 (10%)
Query: 56 NAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALK 115
A+I YS + + +++M+ +G PN +TF ++ SC + + G H L +K
Sbjct: 547 TAMISGYSQRGYASEALHLFVEMLMSGTAPNEFTFATVLTSCTSSSGFQLGRQIHSLVIK 606
Query: 116 NGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHEL 175
+ + V +SL++MY ++G + A +
Sbjct: 607 TSFESHIFVGSSLLDMYA-------------------------------KAGKICEARRV 635
Query: 176 FDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARF 235
FD +PER+VVS +ISGY++ G +L LFR + + G R N T ASVLTA A
Sbjct: 636 FDGLPERDVVSCTAIISGYAQLGLDEEALDLFRRLQREGMRSNYVTYASVLTALSGLAAL 695
Query: 236 NEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGH 295
+ GR VH + +R L ++L +LID+YSKC + ++R+FDSM +R ++ WNAM++G+
Sbjct: 696 DHGRQVHSHVLRAKLPFYVVLQNSLIDMYSKCGSLTYSRRIFDSMPERTVISWNAMLVGY 755
Query: 296 CIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFY 355
HG E ++LF + + PD +TF+ V+ C + G + F +M++
Sbjct: 756 SKHGLGREAVELFKLMKEEN----KVKPDSVTFLAVLSGCSHGGMEDRGLEIFYEMVNQK 811
Query: 356 K-IKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFE--SIMWVSLLSLCRFQG 412
+P HY C+ +L+ A EEA E ++KMP FE + +W SLL CR
Sbjct: 812 DGFEPEIEHYGCVVDLFGRAGRVEEAFEFIKKMP-------FEPTAAIWGSLLGACRVHQ 864
Query: 413 AVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLV 472
V + E +A+ ++++ ++ Y L N+YA AG+W+DV VRELMK++ + + PG +
Sbjct: 865 NVHIGEFVARRLLEIESENAGNYVILSNLYASAGRWDDVRTVRELMKEKAVIKEPGRSWI 924
Query: 473 DLKEVVE 479
+L + +
Sbjct: 925 ELDQTLH 931
Score = 129 bits (324), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 97/328 (29%), Positives = 158/328 (48%), Gaps = 48/328 (14%)
Query: 169 MSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTA 228
+ A + D MPERNVVSW MISGYS+ G +L LF EM+ SG N+ T A+VLT+
Sbjct: 528 LGDARRVLDEMPERNVVSWTAMISGYSQRGYASEALHLFVEMLMSGTAPNEFTFATVLTS 587
Query: 229 CGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCW 288
C S+ F GR +H ++TS + +I + ++L+D+Y+K K+ A+RVFD + +R++V
Sbjct: 588 CTSSSGFQLGRQIHSLVIKTSFESHIFVGSSLLDMYAKAGKICEARRVFDGLPERDVVSC 647
Query: 289 NAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRK-- 346
A+I G+ G EE + LF L + + +T+ V+ A L GR+
Sbjct: 648 TAIISGYAQLGLDEEALDLFRRLQR-----EGMRSNYVTYASVLTALSGLAALDHGRQVH 702
Query: 347 --YFRQMIDFYKIKPN--------------------------FAHYWCMANLYAGAELTE 378
R + FY + N + M Y+ L
Sbjct: 703 SHVLRAKLPFYVVLQNSLIDMYSKCGSLTYSRRIFDSMPERTVISWNAMLVGYSKHGLGR 762
Query: 379 EAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQ------DF 432
EA E+ + M E+N + +S+ ++++LS C G M +R + F +M Q +
Sbjct: 763 EAVELFKLMKEEN-KVKPDSVTFLAVLSGCSHGG---MEDRGLEIFYEMVNQKDGFEPEI 818
Query: 433 SRYQFLLNVYAVAGQWEDVARVRELMKK 460
Y +++++ AG+ E+ E +KK
Sbjct: 819 EHYGCVVDLFGRAGRVEEAF---EFIKK 843
Score = 91.3 bits (225), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 64/197 (32%), Positives = 102/197 (51%), Gaps = 20/197 (10%)
Query: 202 CSLKLFRE-MMKSGFRGND---KTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILD 257
CS + +E +++ G +G + + SVLT C EG+ VH + ++T +P + L
Sbjct: 456 CSNRQLKEALLEMGIQGLEVEFQGYDSVLTECISQTAIREGQRVHAHMIKTCYEPPVYLR 515
Query: 258 TALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTA-LVNGTV 316
T LI LY+KC+ + A+RV D M +RN+V W AMI G+ G E + LF L++GT
Sbjct: 516 TRLIVLYNKCRCLGDARRVLDEMPERNVVSWTAMISGYSQRGYASEALHLFVEMLMSGT- 574
Query: 317 AGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNF-AHYWC---MANLYA 372
+P+E TF V+ +C + GR+ I IK +F +H + + ++YA
Sbjct: 575 -----APNEFTFATVLTSCTSSSGFQLGRQ-----IHSLVIKTSFESHIFVGSSLLDMYA 624
Query: 373 GAELTEEAEEILRKMPE 389
A EA + +PE
Sbjct: 625 KAGKICEARRVFDGLPE 641
Score = 85.5 bits (210), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 63/240 (26%), Positives = 112/240 (46%), Gaps = 8/240 (3%)
Query: 6 QIQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSNS 65
QI + +I + F ++ F +LL A G VF + A+I Y+
Sbjct: 599 QIHSLVIKTS-FESHIFVGSSLLDMYAKAGKICEARRVFDGLPERDVVSCTAIISGYAQL 657
Query: 66 CVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVM 125
+ ++ + + ++ + G N T+ S+ + + ++ G H L+ + F + +
Sbjct: 658 GLDEEALDLFRRLQREGMRSNYVTYASVLTALSGLAALDHGRQVHSHVLRAKLPFYVVLQ 717
Query: 126 NSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERN-- 183
NSLI+MY G++ +R +F M R +ISWN+++ G+ + G A ELF +M E N
Sbjct: 718 NSLIDMYSKCGSLTYSRRIFDSMPERTVISWNAMLVGYSKHGLGREAVELFKLMKEENKV 777
Query: 184 ---VVSWNIMISGYSKSGNPGCSLKLFREMM--KSGFRGNDKTMASVLTACGRSARFNEG 238
V++ ++SG S G L++F EM+ K GF + V+ GR+ R E
Sbjct: 778 KPDSVTFLAVLSGCSHGGMEDRGLEIFYEMVNQKDGFEPEIEHYGCVVDLFGRAGRVEEA 837
>gi|224059226|ref|XP_002299777.1| predicted protein [Populus trichocarpa]
gi|222847035|gb|EEE84582.1| predicted protein [Populus trichocarpa]
Length = 439
Score = 239 bits (609), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 133/387 (34%), Positives = 211/387 (54%), Gaps = 13/387 (3%)
Query: 85 PNSYTFVSLFGSCAK--TGCVERGGMCHGLALKNGVDF-ELPVMNSLINMYGCFGAMDCA 141
PN TF++L CA + G + H K G+D L V +L++MY G ++ +
Sbjct: 8 PNHVTFITLLSGCADLPSQGNSLGPLLHAYTRKLGLDTCNLMVGTALVDMYAKCGHVELS 67
Query: 142 RNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPG 201
R F ++ ++ SWN+++ G VR+G + A E+FD MPER V+SW ++I+G+ K G
Sbjct: 68 RLCFDELKVKNSFSWNTMIDGFVRNGKIREAIEVFDEMPERGVISWTVLINGFVKMGLFE 127
Query: 202 CSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALI 261
+L+ FR+M S + T+ +VL+AC G VH Y ++ L+ N+ + +LI
Sbjct: 128 EALEWFRKMQVSKVEPDRVTIVTVLSACANLGALGLGLWVHRYALKKGLRDNVKICNSLI 187
Query: 262 DLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSI 321
DLYS+C +E+A++VF+ M +R LV WN++I G +G EE ++ F +
Sbjct: 188 DLYSRCGAIELARQVFEKMGERTLVSWNSIIGGLAANGFTEEALEHFDLMQK-----QGF 242
Query: 322 SPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAE 381
P++++F G + AC L+ EG KYF M +KI P HY C+ +LY+ A E+A
Sbjct: 243 KPNDVSFTGALTACSHTGLVDEGLKYFDIMERVHKISPRIEHYGCIVDLYSRAGRLEDAM 302
Query: 382 EILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNV 441
+++ MP M ++ SLL+ CR +G V + ERL V +DP S Y L N+
Sbjct: 303 SVVQNMP-----MKPNEVVVGSLLAACRTRGDVELAERLMNYLVHLDPGADSNYVLLSNI 357
Query: 442 YAVAGQWEDVARVRELMKKRRMGRMPG 468
YA G+W+ + R MK + + PG
Sbjct: 358 YAAVGRWDGACKQRMTMKALGIQKKPG 384
Score = 93.6 bits (231), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 76/300 (25%), Positives = 125/300 (41%), Gaps = 33/300 (11%)
Query: 16 LFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFY 75
L NSF ++ G + VF + G +I + + ++ + ++
Sbjct: 74 LKVKNSFSWNTMIDGFVRNGKIREAIEVFDEMPERGVISWTVLINGFVKMGLFEEALEWF 133
Query: 76 LQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCF 135
+M + P+ T V++ +CA G + G H ALK G+ + + NSLI++Y
Sbjct: 134 RKMQVSKVEPDRVTIVTVLSACANLGALGLGLWVHRYALKKGLRDNVKICNSLIDLYSRC 193
Query: 136 GAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYS 195
GA++ AR +F +M R L+SWNSI+ G +G A E FD+
Sbjct: 194 GAIELARQVFEKMGERTLVSWNSIIGGLAANGFTEEALEHFDL----------------- 236
Query: 196 KSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRT-SLKPNI 254
M K GF+ ND + LTAC + +EG R + P I
Sbjct: 237 --------------MQKQGFKPNDVSFTGALTACSHTGLVDEGLKYFDIMERVHKISPRI 282
Query: 255 ILDTALIDLYSKCQKVEVAQRVFDSMADR-NLVCWNAMILGHCIHGKPEEGIKLFTALVN 313
++DLYS+ ++E A V +M + N V +++ G E +L LV+
Sbjct: 283 EHYGCIVDLYSRAGRLEDAMSVVQNMPMKPNEVVVGSLLAACRTRGDVELAERLMNYLVH 342
>gi|222623259|gb|EEE57391.1| hypothetical protein OsJ_07563 [Oryza sativa Japonica Group]
Length = 748
Score = 239 bits (609), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 147/493 (29%), Positives = 259/493 (52%), Gaps = 22/493 (4%)
Query: 1 MKQLLQIQAHLITSGLFFNNSFWTINLLKH-SADFGSPDYTVLVFKCINNPGTFCVNAVI 59
+ L Q+ AH + +G + T +LL+ S Y +F +P F +A++
Sbjct: 241 LAHLKQLHAHAVVTGRAAAQTT-TFHLLRFASLRLSCLPYARRLFDATPSPNVFLYSAML 299
Query: 60 KAYSNSCVPDQ-----GVVFYLQMIKNGF-MPNSYTF-VSLFGSCAKTGCVERGGMCHGL 112
AY+ + Q + +L+M++ G PN + + + L +CA + R CH
Sbjct: 300 SAYAAASSHSQEHARDSLALFLRMLRRGRPAPNQFVYPLVLRAACAIGVQLVRSIHCH-- 357
Query: 113 ALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAA 172
A K+G + SL++ Y +G M AR +F ++ R+++SW ++VSG+ R+G + A
Sbjct: 358 ACKDGFYGHDFIRTSLLDGYSRYGMMGDARKLFDGLTDRNVVSWTALVSGYARAGKVGDA 417
Query: 173 HELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRS 232
LF+ MP+R+V +WN +I+G +++G ++ +FR M+ GFR N T++ +L+ACG
Sbjct: 418 IVLFERMPQRDVPAWNAIIAGCTQNGLFVEAVGIFRRMVDEGFRPNGTTVSCLLSACGHL 477
Query: 233 ARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMI 292
G+ +HGY R+ + + LID+Y KC + A+ +FD+ +DR L WN++I
Sbjct: 478 GMLKIGKVIHGYAWRSCVGFGSSVVNGLIDMYGKCGNLMEAKWIFDAFSDRGLTTWNSLI 537
Query: 293 LGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMI 352
+HG E I +F ++ N + PDE+TF+G++ AC + EG +YF M
Sbjct: 538 NCLALHGCSESAIAVFNSMRN-----EGVQPDEVTFVGLLNACTHGGFVDEGLRYFELMC 592
Query: 353 DFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQG 412
D + I+P HY C+ +L A ++A + M D ++W SLL+ CR
Sbjct: 593 DEHGIEPEIEHYGCVVDLLCRAGRFQDAMNFINDMKVQPD-----EVIWGSLLNACRIHR 647
Query: 413 AVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMG-RMPGCRL 471
+ + E ++ +D++P + + L N+Y+ G WE+V +VR+LMK+ G ++PGC
Sbjct: 648 HLELAEHAIRNLLDLNPSNANYVVMLANLYSEGGFWEEVRKVRKLMKEDVTGKKLPGCSW 707
Query: 472 VDLKEVVEKLKVG 484
+++ + G
Sbjct: 708 IEVDRKTRRFYSG 720
>gi|297824945|ref|XP_002880355.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297326194|gb|EFH56614.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 599
Score = 239 bits (609), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 131/458 (28%), Positives = 238/458 (51%), Gaps = 14/458 (3%)
Query: 42 LVFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTG 101
+VF + N ++ Y+ + + F+ ++ ++G N ++F L +C K+
Sbjct: 134 VVFDSMPERDVVSWNTMVIGYAQDGNLHEALWFFKELRRSGIKFNEFSFAGLLTACVKSR 193
Query: 102 CVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVS 161
++ HG L G + + S+I+ Y G M+ A+ F +M+ +D+ W +++S
Sbjct: 194 QLQLNQQAHGQVLVAGFLSNVVLSCSIIDAYAKCGQMESAKRCFDEMTVKDIHIWTTLIS 253
Query: 162 GHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKT 221
G+ + GDM AA +LF MPE+N VSW +I+GY + G+ +L LFR+M+ + T
Sbjct: 254 GYAKLGDMEAADKLFREMPEKNPVSWTALIAGYVRQGSGDLALDLFRKMIAMRVKPEQFT 313
Query: 222 MASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMA 281
+S L A A G+ +HGY +RT+++PN I+ ++LID+YSK +E ++RVF
Sbjct: 314 FSSCLCASASIASLRHGKQIHGYMIRTNVRPNAIVTSSLIDMYSKSGSLEASERVFRICY 373
Query: 282 DR-NLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAEL 340
D+ + V WN MI HG + +++ ++ V P+ T + ++ AC + L
Sbjct: 374 DKQDCVLWNTMISALAQHGLGHKALQMLDDMIKFRV-----HPNRTTLVVILNACSHSGL 428
Query: 341 LTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIM 400
+ EG ++F M + I P+ HY C+ +L A +E + +MP + D +
Sbjct: 429 VEEGVRWFESMTVQHGIVPDQEHYACLIDLLGRAGCFKELMSKIEEMPFEPDKH-----I 483
Query: 401 WVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKK 460
W ++L +CR G + ++ A+ + +DP+ + Y L ++YA G+WE V ++R +MKK
Sbjct: 484 WNAILGVCRIHGNEELGKKAAEELIKLDPESSAPYILLSSIYADHGKWELVEKLRGIMKK 543
Query: 461 RRMGRMPGCRLVDLKEVVEKLKV---GHFWRGGMKEEV 495
RR+ + ++++ V+ V H KEE+
Sbjct: 544 RRVNKEKAVSWIEIENKVKAFTVSDGSHAHAHARKEEI 581
Score = 165 bits (417), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 119/412 (28%), Positives = 194/412 (47%), Gaps = 44/412 (10%)
Query: 47 INNPGT--FCV-NAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCV 103
I+NP CV +++ ++ Q V + + G SL C T +
Sbjct: 3 ISNPRKRPICVARSLLSRHATKAELSQAVSRLESLTQQGIRLPFDLLASLLQQCGDTKSL 62
Query: 104 ERGGMCHGLALKNGVDFELP---VMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIV 160
++G H G F+ P + N LI MY G A +F QM R+L SWN++V
Sbjct: 63 KQGKWIHRHLKITG--FKRPNTLLSNHLIGMYMKCGKPIDACKVFDQMHLRNLYSWNNMV 120
Query: 161 SGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDK 220
SG V+SG + A +FD MPER+VVSWN M+ GY++ GN +L F+E+ +SG + N+
Sbjct: 121 SGFVKSGMLVRARVVFDSMPERDVVSWNTMVIGYAQDGNLHEALWFFKELRRSGIKFNEF 180
Query: 221 TMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSM 280
+ A +LTAC +S + + HG + N++L ++ID Y+KC ++E A+R FD M
Sbjct: 181 SFAGLLTACVKSRQLQLNQQAHGQVLVAGFLSNVVLSCSIIDAYAKCGQMESAKRCFDEM 240
Query: 281 ADRNLVCWNAMILGHCIHGKPEEGIKLF-----------TALVNGTVAGGS--------- 320
+++ W +I G+ G E KLF TAL+ G V GS
Sbjct: 241 TVKDIHIWTTLISGYAKLGDMEAADKLFREMPEKNPVSWTALIAGYVRQGSGDLALDLFR 300
Query: 321 ------ISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGA 374
+ P++ TF +CA L G++ MI ++PN + ++Y+ +
Sbjct: 301 KMIAMRVKPEQFTFSSCLCASASIASLRHGKQIHGYMIR-TNVRPNAIVTSSLIDMYSKS 359
Query: 375 ELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQG----AVAMVERLAK 422
E +E + R + D ++W +++S G A+ M++ + K
Sbjct: 360 GSLEASERVFRICYDKQD-----CVLWNTMISALAQHGLGHKALQMLDDMIK 406
Score = 72.4 bits (176), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 72/297 (24%), Positives = 117/297 (39%), Gaps = 39/297 (13%)
Query: 22 FWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKN 81
WT L+ A G + +F+ + A+I Y D + + +MI
Sbjct: 247 IWT-TLISGYAKLGDMEAADKLFREMPEKNPVSWTALIAGYVRQGSGDLALDLFRKMIAM 305
Query: 82 GFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCA 141
P +TF S + A + G HG ++ V V +SLI+MY G+++ +
Sbjct: 306 RVKPEQFTFSSCLCASASIASLRHGKQIHGYMIRTNVRPNAIVTSSLIDMYSKSGSLEAS 365
Query: 142 RNMF-VQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNP 200
+F + +D + WN+ MIS ++ G
Sbjct: 366 ERVFRICYDKQDCVLWNT-------------------------------MISALAQHGLG 394
Query: 201 GCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEG-RSVHGYTVRTSLKPNIILDTA 259
+L++ +M+K N T+ +L AC S EG R TV+ + P+
Sbjct: 395 HKALQMLDDMIKFRVHPNRTTLVVILNACSHSGLVEEGVRWFESMTVQHGIVPDQEHYAC 454
Query: 260 LIDLYSK--CQKVEVAQRVFDSMADRNLVCWNAMILGHC-IHGKPEEGIKLFTALVN 313
LIDL + C K E+ ++ + + + WNA ILG C IHG E G K L+
Sbjct: 455 LIDLLGRAGCFK-ELMSKIEEMPFEPDKHIWNA-ILGVCRIHGNEELGKKAAEELIK 509
Score = 71.6 bits (174), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 70/303 (23%), Positives = 120/303 (39%), Gaps = 65/303 (21%)
Query: 190 MISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTS 249
++S ++ ++ + + G R +AS+L CG + +G+ +H + T
Sbjct: 17 LLSRHATKAELSQAVSRLESLTQQGIRLPFDLLASLLQQCGDTKSLKQGKWIHRHLKITG 76
Query: 250 LK-PNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHG--------- 299
K PN +L LI +Y KC K A +VFD M RNL WN M+ G G
Sbjct: 77 FKRPNTLLSNHLIGMYMKCGKPIDACKVFDQMHLRNLYSWNNMVSGFVKSGMLVRARVVF 136
Query: 300 --KPEEGIKLFTALVNGTVAGGS---------------ISPDEITFIGVICACVRAELLT 342
PE + + +V G G+ I +E +F G++ ACV++ L
Sbjct: 137 DSMPERDVVSWNTMVIGYAQDGNLHEALWFFKELRRSGIKFNEFSFAGLLTACVKSRQLQ 196
Query: 343 EGRKYFRQ---------------MIDFY--------------KIKPNFAHYW-CMANLYA 372
++ Q +ID Y ++ H W + + YA
Sbjct: 197 LNQQAHGQVLVAGFLSNVVLSCSIIDAYAKCGQMESAKRCFDEMTVKDIHIWTTLISGYA 256
Query: 373 GAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDM--DPQ 430
E A+++ R+MPE N + W +L++ QG+ + L + + M P+
Sbjct: 257 KLGDMEAADKLFREMPEKN------PVSWTALIAGYVRQGSGDLALDLFRKMIAMRVKPE 310
Query: 431 DFS 433
F+
Sbjct: 311 QFT 313
>gi|225457861|ref|XP_002279169.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g77010, mitochondrial-like [Vitis vinifera]
Length = 685
Score = 239 bits (609), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 144/501 (28%), Positives = 248/501 (49%), Gaps = 46/501 (9%)
Query: 6 QIQAHLITSGLFFNNSFWT--INLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAY- 62
QI A ++ + F++ + +NL D S ++ V + P F ++A+I Y
Sbjct: 194 QIHARIVVDEVEFDSVLGSSLVNLYGKCGDIDSANH---VLNLMKEPDAFSLSALISGYA 250
Query: 63 ---------------SNSCV---------------PDQGVVFYLQMIKNGFMPNSYTFVS 92
SN+CV + + + M + G + TF S
Sbjct: 251 SCGRMNDARRIFCLKSNACVVLWNSMISGYVANNEALEALELFNNMRRKGVQEDYSTFAS 310
Query: 93 LFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRD 152
+ +C+ G +++G H K G ++ + ++L++MY D A +F + D
Sbjct: 311 VLSACSTLGIIDQGIQVHAHVYKVGFTNDIIIDSALVDMYSKCRRPDDACKLFSDLQAYD 370
Query: 153 LISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMK 212
I NS+++ + G + A ++FD MP ++++SWN MI G+S++ P +L LF EM K
Sbjct: 371 TILLNSMITVYSNCGRIDDARQIFDTMPSKSLISWNSMIVGFSQNACPIEALDLFCEMNK 430
Query: 213 SGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEV 272
G R + ++A V++AC + G + L+ + I+ T+L+D Y KC VE
Sbjct: 431 LGLRMDKFSLAGVISACASISSLELGEQIFARATIIGLEFDQIISTSLVDFYCKCGLVEH 490
Query: 273 AQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVI 332
+++FD M + V WN+M++G+ +G E + +F + + V P +ITF+GV+
Sbjct: 491 GRKLFDRMMKSDEVPWNSMLMGYATNGHGIEALNVFDQMRSVGV-----QPTDITFVGVL 545
Query: 333 CACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDND 392
AC L+ EGRK+F M Y I P HY CM +LYA A L E+A ++ +MP
Sbjct: 546 SACDHCGLVEEGRKWFYAMKLDYHINPGIEHYSCMVDLYARAGLLEDAMNLIEQMP---- 601
Query: 393 NMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVA 452
+ ++ MW S+L C G + +++AK +D+DP++ Y L +YA W A
Sbjct: 602 -LKADTSMWSSVLRGCVAHGNNILGKKVAKRIIDLDPENSGAYVQLSGIYATFEDWGRSA 660
Query: 453 RVRELMKKRRMGRMPGCRLVD 473
+VR+LM +++ ++PGC D
Sbjct: 661 QVRKLMYDKKIPKVPGCSWAD 681
Score = 145 bits (365), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 98/388 (25%), Positives = 180/388 (46%), Gaps = 54/388 (13%)
Query: 56 NAVIKAYSNSCVPDQGVVFYLQMIKNG---FMPNSYTFVSLFGSCAKTGCVERGGMCHGL 112
N++I Y+ + P + V + + N F +++ ++ G+C G ++ G H
Sbjct: 139 NSMIHGYACNGRPKEAVGLFKDLSLNPLERFCGDTFVLATVVGACTNLGALDCGKQIHAR 198
Query: 113 ALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAA 172
+ + V+F+ + +SL+N+YG G +D A ++ M D S ++++SG+ G M+ A
Sbjct: 199 IVVDEVEFDSVLGSSLVNLYGKCGDIDSANHVLNLMKEPDAFSLSALISGYASCGRMNDA 258
Query: 173 HELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRS 232
+F + VV WN MISGY + +L+LF M + G + + T ASVL+AC
Sbjct: 259 RRIFCLKSNACVVLWNSMISGYVANNEALEALELFNNMRRKGVQEDYSTFASVLSACSTL 318
Query: 233 ARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQ------------------------ 268
++G VH + + +II+D+AL+D+YSKC+
Sbjct: 319 GIIDQGIQVHAHVYKVGFTNDIIIDSALVDMYSKCRRPDDACKLFSDLQAYDTILLNSMI 378
Query: 269 -------KVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSI 321
+++ A+++FD+M ++L+ WN+MI+G + P E + LF + +
Sbjct: 379 TVYSNCGRIDDARQIFDTMPSKSLISWNSMIVGFSQNACPIEALDLFCEM-----NKLGL 433
Query: 322 SPDEITFIGVICACVRAELLTEGRKYFRQM----IDFYKIKPNFAHYWCMANLYAGAELT 377
D+ + GVI AC L G + F + ++F +I + + Y L
Sbjct: 434 RMDKFSLAGVISACASISSLELGEQIFARATIIGLEFDQIIST-----SLVDFYCKCGLV 488
Query: 378 EEAEEILRKMPEDNDNMSFESIMWVSLL 405
E ++ +M M + + W S+L
Sbjct: 489 EHGRKLFDRM------MKSDEVPWNSML 510
Score = 112 bits (280), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 78/318 (24%), Positives = 144/318 (45%), Gaps = 61/318 (19%)
Query: 88 YTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFE-LPVMNSLINMYGCFGAMDCARNMFV 146
++ GSC G + RG + H L LK+GV L + N L+ MY +M A+ +F
Sbjct: 7 HSLARQLGSCNNYGSIYRGRLLHILFLKSGVLHSVLSIGNRLLQMYSRCNSMREAQQLFE 66
Query: 147 QMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNI----------------- 189
+M R+ SWN+++ G+++SG + ELFD MP ++ SWN+
Sbjct: 67 EMPKRNCFSWNTMIEGYLKSGSKGKSLELFDSMPHKDAFSWNVVISGFAKEGNLEVARRL 126
Query: 190 --------------MISGYSKSGNPGCSLKLFREMMKSG---FRGNDKTMASVLTACGRS 232
MI GY+ +G P ++ LF+++ + F G+ +A+V+ AC
Sbjct: 127 FNEMPWKNGIAWNSMIHGYACNGRPKEAVGLFKDLSLNPLERFCGDTFVLATVVGACTNL 186
Query: 233 ARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMI 292
+ G+ +H V ++ + +L ++L++LY KC ++ A V + M + + +A+I
Sbjct: 187 GALDCGKQIHARIVVDEVEFDSVLGSSLVNLYGKCGDIDSANHVLNLMKEPDAFSLSALI 246
Query: 293 LGHCIHGKPEEGIKLF-----------TALVNGTVAGGS---------------ISPDEI 326
G+ G+ + ++F ++++G VA + D
Sbjct: 247 SGYASCGRMNDARRIFCLKSNACVVLWNSMISGYVANNEALEALELFNNMRRKGVQEDYS 306
Query: 327 TFIGVICACVRAELLTEG 344
TF V+ AC ++ +G
Sbjct: 307 TFASVLSACSTLGIIDQG 324
>gi|125526069|gb|EAY74183.1| hypothetical protein OsI_02067 [Oryza sativa Indica Group]
Length = 657
Score = 239 bits (609), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 130/402 (32%), Positives = 216/402 (53%), Gaps = 12/402 (2%)
Query: 70 QGVVFYLQMIKN-GFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSL 128
Q + Y+ M+ G N V L +C++ V G H + LKNG D V +L
Sbjct: 258 QALRTYVAMVGTVGIRANEVILVGLVKACSRHSAVSEGQQLHTVILKNGFDAHAFVQATL 317
Query: 129 INMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWN 188
I+ YG +D ++ F + SWN++++ +R + A +LFD MPER+ +SW+
Sbjct: 318 IHYYGSCDFIDHSQMQFKLSDKSHVASWNALMASLLRRNLVHEARQLFDDMPERDTISWS 377
Query: 189 IMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRT 248
+ISGY +SGN +L++F M+ +G N+ T+AS L+A S + R +H Y +
Sbjct: 378 TLISGYVQSGNSNMALQIFCSMLDAGVEPNEITLASALSAVANSGTLGQARWIHDYIISR 437
Query: 249 SLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVC--WNAMILGHCIHGKPEEGIK 306
S++ L LI++Y+KC + A ++F+ + D+++ WN++I IHG ++
Sbjct: 438 SIQLTDKLSAGLINVYAKCGSIAEAVQLFNHVKDKSISVSPWNSIICNLAIHGYVNMSLE 497
Query: 307 LFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWC 366
LF+ L + T +I P+ IT++GV+ AC A ++ EG++ F M Y I+P HY C
Sbjct: 498 LFSQLQSTT----NIKPNSITYLGVLNACCHAGMVAEGKRQFESMRQQYGIQPEIKHYGC 553
Query: 367 MANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVD 426
M +L A EEAE +++ MP M + + W +L+ R QG VA+ E+ A+
Sbjct: 554 MVDLLCRAGYLEEAELLIKTMP-----MKADVVAWGCILAAARTQGNVALGEKAAEELSK 608
Query: 427 MDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPG 468
+DP + L N+YA AG W +V+ VR+ ++ + R+ G
Sbjct: 609 LDPSHGASKIALSNLYADAGHWSNVSVVRKELQNENLERLTG 650
Score = 134 bits (338), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 108/458 (23%), Positives = 205/458 (44%), Gaps = 54/458 (11%)
Query: 58 VIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCA-KTGCVERGGMCHGLALKN 116
VI A S S P++ + + M+ PN T + + A G G HG+A++
Sbjct: 113 VISALSRSGHPERALAVFRDMLTEAVQPNEVTLAEVLTAMACDHGAPAPVGAAHGVAVRR 172
Query: 117 GVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELF 176
G+D + V +L++ YG + AR++F M R+ ++WN++++ +V++G ++ A E+F
Sbjct: 173 GLDGFVIVATNLVHAYGAVSQVPSARSIFELMPDRNTVTWNTMLNCYVKAGMINMAAEVF 232
Query: 177 DIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKS-GFRGNDKTMASVLTACGRSARF 235
++PER+ VSW MI GY + +L+ + M+ + G R N+ + ++ AC R +
Sbjct: 233 GVIPERDEVSWLTMIDGYMCADFLLQALRTYVAMVGTVGIRANEVILVGLVKACSRHSAV 292
Query: 236 NEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQ--------------------- 274
+EG+ +H ++ + + LI Y C ++ +Q
Sbjct: 293 SEGQQLHTVILKNGFDAHAFVQATLIHYYGSCDFIDHSQMQFKLSDKSHVASWNALMASL 352
Query: 275 ----------RVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPD 324
++FD M +R+ + W+ +I G+ G +++F ++++ V P+
Sbjct: 353 LRRNLVHEARQLFDDMPERDTISWSTLISGYVQSGNSNMALQIFCSMLDAGV-----EPN 407
Query: 325 EITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEIL 384
EIT + A + L + R + I I+ + N+YA EA ++
Sbjct: 408 EITLASALSAVANSGTLGQAR-WIHDYIISRSIQLTDKLSAGLINVYAKCGSIAEAVQLF 466
Query: 385 RKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERL---AKSFVDMDPQDFSRYQFLLNV 441
+ + + ++S W S++ G V M L +S ++ P + Y +LN
Sbjct: 467 NHVKDKSISVS----PWNSIICNLAIHGYVNMSLELFSQLQSTTNIKPNSIT-YLGVLNA 521
Query: 442 YAVAGQWEDVARVRELMKKRRMGRMP-----GCRLVDL 474
AG + R E M++ + G P GC +VDL
Sbjct: 522 CCHAGMVAEGKRQFESMRQ-QYGIQPEIKHYGC-MVDL 557
Score = 115 bits (288), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 114/408 (27%), Positives = 183/408 (44%), Gaps = 60/408 (14%)
Query: 78 MIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGV-DFELPVMNSLINMYGCFG 136
M P + VS S A + G H LA K+G+ L V NSL+ Y
Sbjct: 1 MTTRAGAPLAVFLVSSLKSAAAR--LSHGEQLHALAAKSGLLTSNLFVRNSLLAFYSRV- 57
Query: 137 AMDCARNMFVQMSP--RDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGY 194
A A ++F ++ P RD + N ++S R+G + A L MP+R+ VS+ +IS
Sbjct: 58 APSLAYHLFDEIPPLLRDATAHNILLSALARAGRLERAQCLLAEMPQRDAVSFTTVISAL 117
Query: 195 SKSGNPGCSLKLFREMMKSGFRGNDKTMASVLT--ACGRSARFNEGRSVHGYTVRTSLKP 252
S+SG+P +L +FR+M+ + N+ T+A VLT AC A G + HG VR L
Sbjct: 118 SRSGHPERALAVFRDMLTEAVQPNEVTLAEVLTAMACDHGAPAPVG-AAHGVAVRRGLDG 176
Query: 253 NIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGK-----------P 301
+I+ T L+ Y +V A+ +F+ M DRN V WN M+ + G P
Sbjct: 177 FVIVATNLVHAYGAVSQVPSARSIFELMPDRNTVTWNTMLNCYVKAGMINMAAEVFGVIP 236
Query: 302 E--------------------EGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELL 341
E + ++ + A+V GTV I +E+ +G++ AC R +
Sbjct: 237 ERDEVSWLTMIDGYMCADFLLQALRTYVAMV-GTVG---IRANEVILVGLVKACSRHSAV 292
Query: 342 TEGRKYFRQMIDFYKIKPNF-AHYWCMANL--YAGAELTEEAEEILRKMPEDNDNMSFES 398
+EG Q + +K F AH + A L Y G+ + ++ K+ + + S+ +
Sbjct: 293 SEG-----QQLHTVILKNGFDAHAFVQATLIHYYGSCDFIDHSQMQFKLSDKSHVASWNA 347
Query: 399 IMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAG 446
+M SL R +V + F DM +D + L++ Y +G
Sbjct: 348 LM----ASLLRRN----LVHEARQLFDDMPERDTISWSTLISGYVQSG 387
>gi|359488035|ref|XP_003633690.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g14820-like [Vitis vinifera]
Length = 731
Score = 239 bits (609), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 129/449 (28%), Positives = 232/449 (51%), Gaps = 12/449 (2%)
Query: 38 DYTVLVFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSC 97
+Y LVF + + +I++ S + D + +M P+ VS+
Sbjct: 176 EYARLVFDKMMERDVVSWSTMIRSLSRNKEFDMALELIREMNFMQVRPSEVAMVSMVNLF 235
Query: 98 AKTGCVERGGMCHGLALKNGVDFEL--PVMNSLINMYGCFGAMDCARNMFVQMSPRDLIS 155
A T + G H ++N + + P +L++MY G + AR +F ++ + ++S
Sbjct: 236 ADTANMRMGKAMHAYVIRNSNNEHMGVPTTTALLDMYAKCGHLGLARQLFNGLTQKTVVS 295
Query: 156 WNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGF 215
W ++++G +RS + A LFD R+V+ W M+S Y+++ + LF +M SG
Sbjct: 296 WTAMIAGCIRSNRLEEARALFDSTQNRDVMIWTAMLSAYAQANCIDQAFNLFDQMRTSGV 355
Query: 216 RGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQR 275
R T+ S+L+ C + + G+ VH Y + ++ + IL+TAL+D+Y+KC + A R
Sbjct: 356 RPTKVTIVSLLSLCAVAGALDLGKWVHSYIDKERVEVDCILNTALVDMYAKCGDINAAGR 415
Query: 276 VFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICAC 335
+F R++ WNA+I G +HG EE + +F + + P++ITFIG++ AC
Sbjct: 416 LFIEAISRDICMWNAIITGFAMHGYGEEALDIFAEM-----ERQGVKPNDITFIGLLHAC 470
Query: 336 VRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMS 395
A L+TEG+K F +M+ + + P HY CM +L A L +EA E+++ MP +
Sbjct: 471 SHAGLVTEGKKLFEKMVHTFGLVPQIEHYGCMVDLLGRAGLLDEAHEMIKSMP-----IK 525
Query: 396 FESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVR 455
+I+W +L++ CR + E A ++++P++ + N+YA A +W D A VR
Sbjct: 526 PNTIVWGALVAACRLHKNPQLGELAATQLLEIEPENCGYNVLMSNIYAAANRWSDAAGVR 585
Query: 456 ELMKKRRMGRMPGCRLVDLKEVVEKLKVG 484
+ MK M + PG ++++ V + +G
Sbjct: 586 KTMKTVGMKKEPGHSVIEVNGTVHEFLMG 614
Score = 107 bits (267), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 91/408 (22%), Positives = 183/408 (44%), Gaps = 48/408 (11%)
Query: 56 NAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALK 115
N VI +Y+ P + Y Q+ K F +++ S+ +C + + G HG LK
Sbjct: 93 NFVITSYTKRNQPRNALNVYAQLRKMDFEVDNFMAPSVLKACGQVSWTQLGKEIHGFVLK 152
Query: 116 NGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHEL 175
G+D ++ V N+L+ MYG ++ AR +F +M RD++SW++++ R+ +
Sbjct: 153 KGLDRDVFVGNALMLMYGECACVEYARLVFDKMMERDVVSWSTMIRSLSRNKE------- 205
Query: 176 FDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARF 235
FD+ +L+L REM R ++ M S++ +A
Sbjct: 206 FDM------------------------ALELIREMNFMQVRPSEVAMVSMVNLFADTANM 241
Query: 236 NEGRSVHGYTVRTSLKPN--IILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMIL 293
G+++H Y +R S + + TAL+D+Y+KC + +A+++F+ + + +V W AMI
Sbjct: 242 RMGKAMHAYVIRNSNNEHMGVPTTTALLDMYAKCGHLGLARQLFNGLTQKTVVSWTAMIA 301
Query: 294 GHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMID 353
G + EE LF + N D + + ++ A +A + + F QM
Sbjct: 302 GCIRSNRLEEARALFDSTQNR---------DVMIWTAMLSAYAQANCIDQAFNLFDQM-R 351
Query: 354 FYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGA 413
++P + +L A A + + + + D + + + I+ +L+ + G
Sbjct: 352 TSGVRPTKVTIVSLLSLCAVAGALDLGKWVHSYI--DKERVEVDCILNTALVDMYAKCGD 409
Query: 414 VAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKR 461
+ RL F++ +D + ++ +A+ G E+ + M+++
Sbjct: 410 INAAGRL---FIEAISRDICMWNAIITGFAMHGYGEEALDIFAEMERQ 454
Score = 79.0 bits (193), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 35/106 (33%), Positives = 63/106 (59%)
Query: 187 WNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTV 246
WN +I+ Y+K P +L ++ ++ K F ++ SVL ACG+ + G+ +HG+ +
Sbjct: 92 WNFVITSYTKRNQPRNALNVYAQLRKMDFEVDNFMAPSVLKACGQVSWTQLGKEIHGFVL 151
Query: 247 RTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMI 292
+ L ++ + AL+ +Y +C VE A+ VFD M +R++V W+ MI
Sbjct: 152 KKGLDRDVFVGNALMLMYGECACVEYARLVFDKMMERDVVSWSTMI 197
>gi|297745783|emb|CBI15839.3| unnamed protein product [Vitis vinifera]
Length = 505
Score = 239 bits (609), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 129/413 (31%), Positives = 213/413 (51%), Gaps = 43/413 (10%)
Query: 74 FYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYG 133
FY M++N +P+ +F + SCA +G + G H +K G ++++ + L++ Y
Sbjct: 17 FYSGMLRNDVLPSKTSFSLILRSCAISGEAQLGEAFHCQIMKMGFEYDMILQTGLLDFYA 76
Query: 134 CFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNV--VSWNIMI 191
G ++ ARN LFD M ERN V+WN MI
Sbjct: 77 KHGYVEEARN-------------------------------LFDNMTERNSNSVTWNTMI 105
Query: 192 SGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLK 251
S Y + G G ++ +F++M + + TM S+L+AC + G +HGY LK
Sbjct: 106 SAYVQCGEFGTAISMFQQMQSENVKPTEVTMVSLLSACAHLGALDMGEWIHGYIRTKRLK 165
Query: 252 PNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTAL 311
+++L ALID+Y KC +E A VF ++ +N+ CWN++I+G ++G+ EE I F +
Sbjct: 166 IDVVLGNALIDMYCKCGALEAAIDVFHGLSRKNIFCWNSIIVGLGMNGRGEEAIAAFIVM 225
Query: 312 VNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLY 371
I PD +TF+G++ C + LL+ G++YF +M+ Y ++P HY CM +L
Sbjct: 226 EK-----EGIKPDGVTFVGILSGCSHSGLLSAGQRYFSEMLGVYGLEPGVEHYGCMVDLL 280
Query: 372 AGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQD 431
A +EA E++R MP M S++ SLL C+ + E++ + +++DP D
Sbjct: 281 GRAGYLKEALELIRAMP-----MKPNSMVLGSLLRACQIHKDTKLGEQVTQQLLELDPCD 335
Query: 432 FSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLKEVVEKLKVG 484
Y FL N+YA +W+DV R+LM KR + + PGC +++ +V + G
Sbjct: 336 GGNYVFLSNLYASLSRWDDVNTCRKLMIKRGVHKTPGCSSIEVNNIVHEFVAG 388
Score = 68.2 bits (165), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 46/167 (27%), Positives = 78/167 (46%), Gaps = 4/167 (2%)
Query: 49 NPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGM 108
N + N +I AY + + QM P T VSL +CA G ++ G
Sbjct: 95 NSNSVTWNTMISAYVQCGEFGTAISMFQQMQSENVKPTEVTMVSLLSACAHLGALDMGEW 154
Query: 109 CHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGD 168
HG + ++ + N+LI+MY GA++ A ++F +S +++ WNSI+ G +G
Sbjct: 155 IHGYIRTKRLKIDVVLGNALIDMYCKCGALEAAIDVFHGLSRKNIFCWNSIIVGLGMNGR 214
Query: 169 MSAAHELFDIMPERNV----VSWNIMISGYSKSGNPGCSLKLFREMM 211
A F +M + + V++ ++SG S SG + F EM+
Sbjct: 215 GEEAIAAFIVMEKEGIKPDGVTFVGILSGCSHSGLLSAGQRYFSEML 261
Score = 62.4 bits (150), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 44/190 (23%), Positives = 85/190 (44%), Gaps = 8/190 (4%)
Query: 204 LKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDL 263
L + M+++ + + + +L +C S G + H ++ + ++IL T L+D
Sbjct: 15 LGFYSGMLRNDVLPSKTSFSLILRSCAISGEAQLGEAFHCQIMKMGFEYDMILQTGLLDF 74
Query: 264 YSKCQKVEVAQRVFDSMADR--NLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSI 321
Y+K VE A+ +FD+M +R N V WN MI + G+ I +F + + V
Sbjct: 75 YAKHGYVEEARNLFDNMTERNSNSVTWNTMISAYVQCGEFGTAISMFQQMQSENV----- 129
Query: 322 SPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAE 381
P E+T + ++ AC L G ++ I ++K + + ++Y E A
Sbjct: 130 KPTEVTMVSLLSACAHLGALDMG-EWIHGYIRTKRLKIDVVLGNALIDMYCKCGALEAAI 188
Query: 382 EILRKMPEDN 391
++ + N
Sbjct: 189 DVFHGLSRKN 198
Score = 38.5 bits (88), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 17/72 (23%), Positives = 35/72 (48%)
Query: 35 GSPDYTVLVFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLF 94
G+ + + VF ++ FC N++I + ++ + ++ M K G P+ TFV +
Sbjct: 182 GALEAAIDVFHGLSRKNIFCWNSIIVGLGMNGRGEEAIAAFIVMEKEGIKPDGVTFVGIL 241
Query: 95 GSCAKTGCVERG 106
C+ +G + G
Sbjct: 242 SGCSHSGLLSAG 253
>gi|255541924|ref|XP_002512026.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223549206|gb|EEF50695.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 810
Score = 238 bits (608), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 133/430 (30%), Positives = 231/430 (53%), Gaps = 43/430 (10%)
Query: 56 NAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALK 115
NA+I + + P + + Y+QM +G +P+ +T SL + A + G HG L+
Sbjct: 306 NALIGGCAQNGDPRKALNLYIQMTYSGLVPDWFTIGSLLLASAHLKSLRYGKEVHGFVLR 365
Query: 116 NGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHEL 175
+G++ + + SL+++Y + G+ S+A L
Sbjct: 366 HGLEIDSFIGISLLSLY-------------------------------IHCGESSSARLL 394
Query: 176 FDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARF 235
FD M E++ VSWN MISGYS++G P +L LFR+++ GF+ +D + SVL AC + +
Sbjct: 395 FDGMEEKSSVSWNAMISGYSQNGLPEDALILFRKLVSDGFQPSDIAVVSVLGACSQQSAL 454
Query: 236 NEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGH 295
G+ H Y ++ L ++ + + ID+Y+K ++ ++ VFD + +++L WNA+I +
Sbjct: 455 RLGKETHCYALKALLMEDVFVACSTIDMYAKSGCIKESRSVFDGLKNKDLASWNAIIAAY 514
Query: 296 CIHGKPEEGIKLFTALVN-GTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDF 354
+HG EE I+LF + G + PD TFIG++ C A L+ EG KYF +M +F
Sbjct: 515 GVHGDGEESIELFERMRKVGQM------PDGFTFIGILTVCSHAGLVEEGLKYFNEMQNF 568
Query: 355 YKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAV 414
+ I+P HY C+ ++ A ++A ++ +MPE D S +W SLLS CR G +
Sbjct: 569 HGIEPKLEHYACVMDMLGRAGRLDDALRLVHEMPEQPD-----SRVWSSLLSFCRNFGEL 623
Query: 415 AMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDL 474
+ + +A+ ++++P++ Y L N+YA +G+W+DV RVR+++K + + GC ++L
Sbjct: 624 EIGQIVAEKLLELEPKNVENYVSLSNLYAGSGRWDDVRRVRQMIKDIGLQKDAGCSWIEL 683
Query: 475 KEVVEKLKVG 484
V G
Sbjct: 684 GGKVHSFVAG 693
Score = 123 bits (309), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 89/320 (27%), Positives = 146/320 (45%), Gaps = 46/320 (14%)
Query: 59 IKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERG--GMCHGLALKN 116
+ + N D +F + F +++TF + +C TG ++RG + HG+ +K
Sbjct: 3 VAVHRNELYSDAIDMFVKLITDTEFNADNFTFPCVIKAC--TGSLDRGLGEVIHGMVIKM 60
Query: 117 GVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELF 176
G+ ++ V N+LI MYG FG +D AA ++F
Sbjct: 61 GLLLDVFVGNALIAMYGKFGFVD-------------------------------AAVKVF 89
Query: 177 DIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMM--KSGFRGNDKTMASVLTACGRSAR 234
MP RN+VSWN +ISG+S++G + EMM + G + T+ +VL C R
Sbjct: 90 HYMPVRNLVSWNSIISGFSENGFSKDCFDMLVEMMAGEEGLLPDIATLVTVLPVCAREVD 149
Query: 235 FNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILG 294
G +HG V+ L ++ ++ +L+D+YSKC + AQ +FD +N V WN MI G
Sbjct: 150 VQMGIRIHGLAVKLGLSEDVRVNNSLVDMYSKCGYLTEAQMLFDKNNRKNAVSWNTMIGG 209
Query: 295 HCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDF 354
C G E LF + I +E+T + ++ AC+ L ++ +
Sbjct: 210 LCTKGYIFEAFNLFREMQMQE----DIEVNEVTVLNILPACLEISQLRSLKE-----LHG 260
Query: 355 YKIKPNFAHYWCMANLYAGA 374
Y I+ F + +AN + A
Sbjct: 261 YSIRHGFQYDELVANGFVAA 280
Score = 119 bits (297), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 124/527 (23%), Positives = 213/527 (40%), Gaps = 108/527 (20%)
Query: 7 IQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSNSC 66
I +I GL + F L+ FG D V VF + N++I +S +
Sbjct: 53 IHGMVIKMGLLLD-VFVGNALIAMYGKFGFVDAAVKVFHYMPVRNLVSWNSIISGFSENG 111
Query: 67 VPDQGVVFYLQMI--KNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPV 124
++M+ + G +P+ T V++ CA+ V+ G HGLA+K G+ ++ V
Sbjct: 112 FSKDCFDMLVEMMAGEEGLLPDIATLVTVLPVCAREVDVQMGIRIHGLAVKLGLSEDVRV 171
Query: 125 MNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNV 184
NSL++MY + G ++ A LFD +N
Sbjct: 172 NNSLVDMYS-------------------------------KCGYLTEAQMLFDKNNRKNA 200
Query: 185 VSWNIMISGYSKSGNPGCSLKLFREM-MKSGFRGNDKTMASVLTACGRSARFNEGRSVHG 243
VSWN MI G G + LFREM M+ N+ T+ ++L AC ++ + +HG
Sbjct: 201 VSWNTMIGGLCTKGYIFEAFNLFREMQMQEDIEVNEVTVLNILPACLEISQLRSLKELHG 260
Query: 244 YTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEE 303
Y++R + + ++ + Y+KC + A+RVF SM + + WNA+I G +G P +
Sbjct: 261 YSIRHGFQYDELVANGFVAAYAKCGMLICAERVFYSMETKTVNSWNALIGGCAQNGDPRK 320
Query: 304 GIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYF--------------- 348
+ L+ + T +G + PD T ++ A + L G++
Sbjct: 321 ALNLYIQM---TYSG--LVPDWFTIGSLLLASAHLKSLRYGKEVHGFVLRHGLEIDSFIG 375
Query: 349 ----------------RQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDND 392
R + D + K + + + M + Y+ L E+A + RK+ D
Sbjct: 376 ISLLSLYIHCGESSSARLLFDGMEEKSSVS-WNAMISGYSQNGLPEDALILFRKLVSDGF 434
Query: 393 NMSFESIMWVSLLSLCRFQGAVAM-----------------------VERLAKS------ 423
S I VS+L C Q A+ + ++ AKS
Sbjct: 435 QPS--DIAVVSVLGACSQQSALRLGKETHCYALKALLMEDVFVACSTIDMYAKSGCIKES 492
Query: 424 ---FVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMP 467
F + +D + + ++ Y V G E+ + E M R++G+MP
Sbjct: 493 RSVFDGLKNKDLASWNAIIAAYGVHGDGEESIELFERM--RKVGQMP 537
Score = 106 bits (265), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 88/354 (24%), Positives = 160/354 (45%), Gaps = 53/354 (14%)
Query: 152 DLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMM 211
D + N V+ + + G + A +F M + V SWN +I G +++G+P +L L+ +M
Sbjct: 270 DELVANGFVAAYAKCGMLICAERVFYSMETKTVNSWNALIGGCAQNGDPRKALNLYIQMT 329
Query: 212 KSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVE 271
SG + T+ S+L A G+ VHG+ +R L+ + + +L+ LY C +
Sbjct: 330 YSGLVPDWFTIGSLLLASAHLKSLRYGKEVHGFVLRHGLEIDSFIGISLLSLYIHCGESS 389
Query: 272 VAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGV 331
A+ +FD M +++ V WNAMI G+ +G PE+ + LF LV+ P +I + V
Sbjct: 390 SARLLFDGMEEKSSVSWNAMISGYSQNGLPEDALILFRKLVS-----DGFQPSDIAVVSV 444
Query: 332 ICACVRAELLTEGRKYF---------------RQMIDFYK----IKPNFAHYWCMAN--- 369
+ AC + L G++ ID Y IK + + + + N
Sbjct: 445 LGACSQQSALRLGKETHCYALKALLMEDVFVACSTIDMYAKSGCIKESRSVFDGLKNKDL 504
Query: 370 -----------LYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVE 418
++ E + E E +RK+ + D +F + +L++C G +VE
Sbjct: 505 ASWNAIIAAYGVHGDGEESIELFERMRKVGQMPDGFTF-----IGILTVCSHAG---LVE 556
Query: 419 RLAKSFVDM------DPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRM 466
K F +M +P+ Y ++++ AG+ +D R+ M ++ R+
Sbjct: 557 EGLKYFNEMQNFHGIEPK-LEHYACVMDMLGRAGRLDDALRLVHEMPEQPDSRV 609
Score = 89.4 bits (220), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 70/283 (24%), Positives = 132/283 (46%), Gaps = 11/283 (3%)
Query: 6 QIQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSNS 65
++ ++ GL + SF I+LL G L+F + + NA+I YS +
Sbjct: 358 EVHGFVLRHGLEID-SFIGISLLSLYIHCGESSSARLLFDGMEEKSSVSWNAMISGYSQN 416
Query: 66 CVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVM 125
+P+ ++ + +++ +GF P+ VS+ G+C++ + G H ALK + ++ V
Sbjct: 417 GLPEDALILFRKLVSDGFQPSDIAVVSVLGACSQQSALRLGKETHCYALKALLMEDVFVA 476
Query: 126 NSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVV 185
S I+MY G + +R++F + +DL SWN+I++ + GD + ELF+ M + +
Sbjct: 477 CSTIDMYAKSGCIKESRSVFDGLKNKDLASWNAIIAAYGVHGDGEESIELFERMRKVGQM 536
Query: 186 SWNIMISGY----SKSGNPGCSLKLFREMMK-SGFRGNDKTMASVLTACGRSARFNEG-R 239
G S +G LK F EM G + A V+ GR+ R ++ R
Sbjct: 537 PDGFTFIGILTVCSHAGLVEEGLKYFNEMQNFHGIEPKLEHYACVMDMLGRAGRLDDALR 596
Query: 240 SVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMAD 282
VH +P+ + ++L+ ++E+ Q V + + +
Sbjct: 597 LVH----EMPEQPDSRVWSSLLSFCRNFGELEIGQIVAEKLLE 635
>gi|449520177|ref|XP_004167110.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g25360-like [Cucumis sativus]
Length = 797
Score = 238 bits (608), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 138/432 (31%), Positives = 223/432 (51%), Gaps = 14/432 (3%)
Query: 56 NAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALK 115
NA+I Y + + + +M G + T+ ++ +CA G + G H LK
Sbjct: 258 NAMISGYVHCGCFQEALTLCRKMRFLGIQFDDITYTTIISACANVGSFQMGKQVHAYILK 317
Query: 116 NGVD----FELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSA 171
N ++ F L V N+LI +Y +D AR +F M R++I+WN+I+SG+V +G M
Sbjct: 318 NELNPNHSFCLSVSNALITLYCKNNKVDEARKIFYAMPVRNIITWNAILSGYVNAGRMEE 377
Query: 172 AHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGR 231
A F+ MP +N+++ +MISG +++G LKLF++M GF D A LTAC
Sbjct: 378 AKSFFEEMPVKNLLTLTVMISGLAQNGFGDEGLKLFKQMRLDGFEPCDFAFAGALTACSV 437
Query: 232 SARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAM 291
GR +H V + ++ + A+I +Y+KC VE A+ VF +M +LV WN+M
Sbjct: 438 LGALENGRQLHAQLVHLGYESSLSVGNAMISMYAKCGVVEAAESVFVTMPSVDLVSWNSM 497
Query: 292 ILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQM 351
I HG + I+LF ++ + PD ITF+ V+ AC A L+ +GR YF M
Sbjct: 498 IAALGQHGHGVKAIELFDQMLK-----EGVFPDRITFLTVLTACSHAGLVEKGRHYFNSM 552
Query: 352 IDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQ 411
++ Y I P HY M +L+ A + A ++ MP + +W +LL+ CR
Sbjct: 553 LESYGITPCEDHYARMVDLFCRAGMFSYARIVIDSMPSKPG-----APVWEALLAGCRIH 607
Query: 412 GAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRL 471
G + + A+ + PQ+ Y L N+YA G+W +VA+VR+LM+ + + + P C
Sbjct: 608 GNMDLGIEAAEQLFKLMPQNDGTYVLLSNIYADVGRWNEVAKVRKLMRDQAVRKEPACSW 667
Query: 472 VDLKEVVEKLKV 483
++++ V V
Sbjct: 668 IEVENKVHVFMV 679
Score = 156 bits (395), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 108/393 (27%), Positives = 188/393 (47%), Gaps = 51/393 (12%)
Query: 56 NAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAK-TGCVERGGMCHGLAL 114
NA+I Y+++ + + M ++ F P+ +TF S+ + G ++ G H +
Sbjct: 116 NAMITGYAHNGDGHSALELFRAMRRDDFRPDDFTFTSVLSALVLFVGNEQQCGQMHCAVV 175
Query: 115 KNGVD-FELPVMNSLINMY---------GCFGAMDCARNMFVQMSPRDLISWNSIVSGHV 164
K G+ V+N+L+++Y C AM AR +F +M RD ++W ++++G+V
Sbjct: 176 KTGMGCVSSSVLNALLSVYVKRASELGISC-SAMVSARKLFDEMPKRDELTWTTMITGYV 234
Query: 165 RSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMAS 224
R+ D++ A E+F+ M E +WN MISGY G +L L R+M G + +D T +
Sbjct: 235 RNDDLNGAREVFEAMVENLGAAWNAMISGYVHCGCFQEALTLCRKMRFLGIQFDDITYTT 294
Query: 225 VLTACGRSARFNEGRSVHGYTVRTSLKPN----IILDTALIDLYSKCQKVEVAQRVFDSM 280
+++AC F G+ VH Y ++ L PN + + ALI LY K KV+ A+++F +M
Sbjct: 295 IISACANVGSFQMGKQVHAYILKNELNPNHSFCLSVSNALITLYCKNNKVDEARKIFYAM 354
Query: 281 ADRNLVCWNAMILGHCIHGKPEEGIKLF-----------TALVNGTVAGG---------- 319
RN++ WNA++ G+ G+ EE F T +++G G
Sbjct: 355 PVRNIITWNAILSGYVNAGRMEEAKSFFEEMPVKNLLTLTVMISGLAQNGFGDEGLKLFK 414
Query: 320 -----SISPDEITFIGVICACVRAELLTEGRKYFRQMIDF-YKIKPNFAHYWCMANLYAG 373
P + F G + AC L GR+ Q++ Y+ + + M ++YA
Sbjct: 415 QMRLDGFEPCDFAFAGALTACSVLGALENGRQLHAQLVHLGYESSLSVGN--AMISMYAK 472
Query: 374 AELTEEAEEILRKMPEDNDNMSFESIMWVSLLS 406
+ E AE + MP S + + W S+++
Sbjct: 473 CGVVEAAESVFVTMP------SVDLVSWNSMIA 499
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 65/254 (25%), Positives = 110/254 (43%), Gaps = 33/254 (12%)
Query: 55 VNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLAL 114
+ +I + + D+G+ + QM +GF P + F +C+ G +E G H +
Sbjct: 393 LTVMISGLAQNGFGDEGLKLFKQMRLDGFEPCDFAFAGALTACSVLGALENGRQLHAQLV 452
Query: 115 KNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHE 174
G + L V N++I+MY G ++ A ++FV M DL+SWNS+++ + G A E
Sbjct: 453 HLGYESSLSVGNAMISMYAKCGVVEAAESVFVTMPSVDLVSWNSMIAALGQHGHGVKAIE 512
Query: 175 LFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSAR 234
LFD +M+K G + T +VLTAC +
Sbjct: 513 LFD-------------------------------QMLKEGVFPDRITFLTVLTACSHAGL 541
Query: 235 FNEGRSVHGYTVRT-SLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADR-NLVCWNAMI 292
+GR + + + P ++DL+ + A+ V DSM + W A++
Sbjct: 542 VEKGRHYFNSMLESYGITPCEDHYARMVDLFCRAGMFSYARIVIDSMPSKPGAPVWEALL 601
Query: 293 LGHCIHGKPEEGIK 306
G IHG + GI+
Sbjct: 602 AGCRIHGNMDLGIE 615
Score = 90.1 bits (222), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 93/374 (24%), Positives = 162/374 (43%), Gaps = 77/374 (20%)
Query: 110 HGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDM 169
H + +G +N L+ MY + AR +F ++ D I+ ++++ + G++
Sbjct: 36 HAHMIASGFKPRGHFLNRLLEMYCKSSNLVYARQLFEEIPNPDAIARTTLITAYCALGNL 95
Query: 170 SAAHELFDIMP--ERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLT 227
E+F+ P R+ V +N MI+GY+ +G+ +L+LFR M + FR +D T SVL+
Sbjct: 96 ELGREIFNGTPLYMRDSVFYNAMITGYAHNGDGHSALELFRAMRRDDFRPDDFTFTSVLS 155
Query: 228 A----------CGRSARFNEGRSVHGYTVRTSLK--PNIILDTALIDLYSK--------C 267
A CG+ +H V+T + + +L+ AL+ +Y K C
Sbjct: 156 ALVLFVGNEQQCGQ---------MHCAVVKTGMGCVSSSVLN-ALLSVYVKRASELGISC 205
Query: 268 QKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALV-------NGTVAGG- 319
+ A+++FD M R+ + W MI G+ + ++F A+V N ++G
Sbjct: 206 SAMVSARKLFDEMPKRDELTWTTMITGYVRNDDLNGAREVFEAMVENLGAAWNAMISGYV 265
Query: 320 ------------------SISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNF 361
I D+IT+ +I AC G++ ++ ++ PN
Sbjct: 266 HCGCFQEALTLCRKMRFLGIQFDDITYTTIISACANVGSFQMGKQVHAYILK-NELNPN- 323
Query: 362 AHYWCMA------NLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVA 415
H +C++ LY +EA +I MP N I W ++LS + A
Sbjct: 324 -HSFCLSVSNALITLYCKNNKVDEARKIFYAMPVRN------IITWNAILS--GYVNAGR 374
Query: 416 MVERLAKSFVDMDP 429
M E AKSF + P
Sbjct: 375 MEE--AKSFFEEMP 386
Score = 42.0 bits (97), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 28/132 (21%), Positives = 53/132 (40%), Gaps = 28/132 (21%)
Query: 233 ARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMI 292
A F+ R+VH + + + KP L+++Y K + A+++F+ + + + + +I
Sbjct: 27 ASFSLARAVHAHMIASGFKPRGHFLNRLLEMYCKSSNLVYARQLFEEIPNPDAIARTTLI 86
Query: 293 LGHCIHGKPEEGIKLF-------------TALVNGTVAGG---------------SISPD 324
+C G E G ++F A++ G G PD
Sbjct: 87 TAYCALGNLELGREIFNGTPLYMRDSVFYNAMITGYAHNGDGHSALELFRAMRRDDFRPD 146
Query: 325 EITFIGVICACV 336
+ TF V+ A V
Sbjct: 147 DFTFTSVLSALV 158
>gi|15232648|ref|NP_190263.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75207666|sp|Q9STF3.1|PP265_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At3g46790, chloroplastic; AltName: Full=Protein
CHLORORESPIRATORY REDUCTION 2; Flags: Precursor
gi|5541680|emb|CAB51186.1| putative protein [Arabidopsis thaliana]
gi|110741961|dbj|BAE98921.1| hypothetical protein [Arabidopsis thaliana]
gi|332644684|gb|AEE78205.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 657
Score = 238 bits (608), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 141/471 (29%), Positives = 236/471 (50%), Gaps = 50/471 (10%)
Query: 5 LQIQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSN 64
L++ H++ +G + F L+ +D GS DY VF + NA+ +A +
Sbjct: 97 LRVHRHILDNG-SDQDPFLATKLIGMYSDLGSVDYARKVFDKTRKRTIYVWNALFRALTL 155
Query: 65 SCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGC----VERGGMCHGLALKNGVDF 120
+ ++ + Y +M + G + +T+ + +C + C + +G H + G
Sbjct: 156 AGHGEEVLGLYWKMNRIGVESDRFTYTYVLKACVASECTVNHLMKGKEIHAHLTRRGYSS 215
Query: 121 ELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMP 180
+ +M +L++MY FG +D A +F MP
Sbjct: 216 HVYIMTTLVDMYARFGCVDYASY-------------------------------VFGGMP 244
Query: 181 ERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRG--NDKTMASVLTACGRSARFNEG 238
RNVVSW+ MI+ Y+K+G +L+ FREMM+ N TM SVL AC A +G
Sbjct: 245 VRNVVSWSAMIACYAKNGKAFEALRTFREMMRETKDSSPNSVTMVSVLQACASLAALEQG 304
Query: 239 RSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIH 298
+ +HGY +R L + + +AL+ +Y +C K+EV QRVFD M DR++V WN++I + +H
Sbjct: 305 KLIHGYILRRGLDSILPVISALVTMYGRCGKLEVGQRVFDRMHDRDVVSWNSLISSYGVH 364
Query: 299 GKPEEGIKLFTA-LVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKI 357
G ++ I++F L NG SP +TF+ V+ AC L+ EG++ F M + I
Sbjct: 365 GYGKKAIQIFEEMLANGA------SPTPVTFVSVLGACSHEGLVEEGKRLFETMWRDHGI 418
Query: 358 KPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMV 417
KP HY CM +L A +EA ++++ M + +W SLL CR G V +
Sbjct: 419 KPQIEHYACMVDLLGRANRLDEAAKMVQDMRTEPGPK-----VWGSLLGSCRIHGNVELA 473
Query: 418 ERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPG 468
ER ++ ++P++ Y L ++YA A W++V RV++L++ R + ++PG
Sbjct: 474 ERASRRLFALEPKNAGNYVLLADIYAEAQMWDEVKRVKKLLEHRGLQKLPG 524
Score = 89.4 bits (220), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 65/265 (24%), Positives = 110/265 (41%), Gaps = 38/265 (14%)
Query: 85 PNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNM 144
P+ T+ L C + H L NG D + + LI MY G++D AR
Sbjct: 75 PSQQTYELLILCCGHRSSLSDALRVHRHILDNGSDQDPFLATKLIGMYSDLGSVDYAR-- 132
Query: 145 FVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSL 204
++FD +R + WN + + +G+ L
Sbjct: 133 -----------------------------KVFDKTRKRTIYVWNALFRALTLAGHGEEVL 163
Query: 205 KLFREMMKSGFRGNDKTMASVLTACGRSA----RFNEGRSVHGYTVRTSLKPNIILDTAL 260
L+ +M + G + T VL AC S +G+ +H + R ++ + T L
Sbjct: 164 GLYWKMNRIGVESDRFTYTYVLKACVASECTVNHLMKGKEIHAHLTRRGYSSHVYIMTTL 223
Query: 261 IDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGS 320
+D+Y++ V+ A VF M RN+V W+AMI + +GK E ++ F ++ T
Sbjct: 224 VDMYARFGCVDYASYVFGGMPVRNVVSWSAMIACYAKNGKAFEALRTFREMMRET---KD 280
Query: 321 ISPDEITFIGVICACVRAELLTEGR 345
SP+ +T + V+ AC L +G+
Sbjct: 281 SSPNSVTMVSVLQACASLAALEQGK 305
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 39/155 (25%), Positives = 66/155 (42%), Gaps = 9/155 (5%)
Query: 185 VSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGY 244
+S N +I K G LK ++ + +T ++ CG + ++ VH +
Sbjct: 47 ISNNQLIQSLCKEGK----LKQAIRVLSQESSPSQQTYELLILCCGHRSSLSDALRVHRH 102
Query: 245 TVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEG 304
+ + L T LI +YS V+ A++VFD R + WNA+ + G EE
Sbjct: 103 ILDNGSDQDPFLATKLIGMYSDLGSVDYARKVFDKTRKRTIYVWNALFRALTLAGHGEEV 162
Query: 305 IKLFTALVNGTVAGGSISPDEITFIGVICACVRAE 339
+ L+ + V D T+ V+ ACV +E
Sbjct: 163 LGLYWKMNRIGVES-----DRFTYTYVLKACVASE 192
>gi|297846320|ref|XP_002891041.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297336883|gb|EFH67300.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 586
Score = 238 bits (608), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 143/480 (29%), Positives = 245/480 (51%), Gaps = 14/480 (2%)
Query: 1 MKQLLQIQAHLITSGLFFNNSFWTINLLKH-SADFGSPDYTVLVFKCINNPGTFCVNAVI 59
+ L Q+Q+ LI SGL ++ F LL+ + + Y +F + P T AV+
Sbjct: 37 LNHLKQVQSFLIVSGLS-HSHFLCFKLLRFCTLRLCNLSYARFIFDRFSFPNTHLYAAVL 95
Query: 60 KAYSNSCV--PDQGVVFYLQMIKNGF-MPNSYTFVSLFGSCAKTGCVERGGMCHGLALKN 116
YS+S F+ M+ F PN + + + S + H K+
Sbjct: 96 TGYSSSLPLHASSAFSFFRLMVNRSFPRPNHFIYPLVLKSTPYLSSAFSTPLVHTHLFKS 155
Query: 117 GVDFELPVMNSLINMYGC-FGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHEL 175
G + V +L++ Y + AR +F +MS R+++SW +++SG+ RSGD+ A L
Sbjct: 156 GFHLYVVVQTALLHSYASSVSHITLARQLFDEMSERNVVSWTAMLSGYARSGDIFNAVAL 215
Query: 176 FDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSG-FRGNDKTMASVLTACGRSAR 234
F+ MPER+V SWN +++ +++G ++ LFR M+ R N+ T+ VL+AC ++
Sbjct: 216 FEEMPERDVPSWNAILAACTQNGLFVEAVSLFRRMINDPCIRPNEVTLVCVLSACAQTGT 275
Query: 235 FNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILG 294
+ +H + R +L ++ + +L+DLY KC +E A VF + ++L WN+MI
Sbjct: 276 LQLAKGIHAFAYRRNLSSDVFVSNSLVDLYGKCGNLEEASSVFKMSSKKSLTAWNSMINC 335
Query: 295 HCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDF 354
+HG+ EE I +F ++ + I PD ITFIG++ AC L+++GR YF M
Sbjct: 336 FALHGRSEEAIAVFEDMMK--LNSHDIKPDHITFIGLLNACTHGGLVSKGRGYFDLMKKR 393
Query: 355 YKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAV 414
+ I+P HY C+ +L A +EA E + M + D E+I W SLL+ C+ G +
Sbjct: 394 FGIEPRIEHYGCLIDLLGRAGQFDEALETMSTMKMEAD----EAI-WGSLLNACKKYGHL 448
Query: 415 AMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDL 474
+ E K+ V ++P + + N+Y G WE+ R R+++K + + PG +++
Sbjct: 449 DLAEVAVKNLVALNPNNGGYVAMMANLYGEMGNWEEARRARKMIKHQNAYKPPGWSQIEI 508
>gi|242050732|ref|XP_002463110.1| hypothetical protein SORBIDRAFT_02g037960 [Sorghum bicolor]
gi|241926487|gb|EER99631.1| hypothetical protein SORBIDRAFT_02g037960 [Sorghum bicolor]
Length = 802
Score = 238 bits (608), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 142/435 (32%), Positives = 219/435 (50%), Gaps = 18/435 (4%)
Query: 56 NAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALK 115
NA+I Y +S + + + +M+ + +TF S+ +CA G G HG +
Sbjct: 263 NAMISGYVHSGMVVEAFELFRRMVLERVPLDEFTFTSVLSACANAGFFAHGKSVHGQITR 322
Query: 116 NGVDF----ELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSA 171
+F LPV N+L+ +Y G + AR +F M +D++SWN+I+SG+V S +
Sbjct: 323 LQPNFVPEAALPVNNALVTLYSKCGNIAVARRIFDNMKSKDVVSWNTILSGYVESSCLDK 382
Query: 172 AHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGR 231
A E+F+ MP +N +SW +M+SGY G +LKLF M + D T A ++ACG
Sbjct: 383 AVEVFEEMPYKNELSWMVMVSGYVHGGFSEDALKLFNRMRAEDVKPCDYTYAGAISACGE 442
Query: 232 SARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAM 291
G+ +HG+ V+ + + ALI +Y++C V+ A +F M + + V WNAM
Sbjct: 443 LGSLKHGKQLHGHLVQLGFEGSNSAGNALITMYARCGAVKEANLMFLVMPNIDSVSWNAM 502
Query: 292 ILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQM 351
I HG E ++LF +V I PD I+F+ V+ AC + L+ EG +YF M
Sbjct: 503 ISALGQHGHGREALELFDRMV-----AEGIYPDRISFLTVLTACNHSGLVDEGFQYFESM 557
Query: 352 IDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESI--MWVSLLSLCR 409
+ I P HY + +L A EA ++++ MP FE +W ++LS CR
Sbjct: 558 KRDFGIIPGEDHYTRLIDLLGRAGRIGEARDLIKTMP-------FEPTPSIWEAILSGCR 610
Query: 410 FQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGC 469
G + + A M PQ Y L N Y+ AG+W D ARVR+LM+ R + + PGC
Sbjct: 611 TSGDMELGAHAADQLFKMTPQHDGTYILLSNTYSAAGRWVDAARVRKLMRDRGVKKEPGC 670
Query: 470 RLVDLKEVVEKLKVG 484
++ V VG
Sbjct: 671 SWIEAGNKVHVFVVG 685
Score = 152 bits (384), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 129/471 (27%), Positives = 218/471 (46%), Gaps = 63/471 (13%)
Query: 52 TFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFM-PNSYTFVSLFGSCAKTG--CVERGGM 108
T NAVI AY+ + V + ++ +G + P+ Y+F +L + V
Sbjct: 121 TVLHNAVISAYARASHAAPAVAVFRSLLASGSLRPDDYSFTALLSAAGHLPNISVRHCAQ 180
Query: 109 CHGLALKNGVDFELPVMNSLINMYGCFGAMDC---ARNMFVQMSPRDLISWNSIVSGHVR 165
LK+G L V N+L+ +Y A++ AR + +M +D ++W ++V G+VR
Sbjct: 181 LQCSVLKSGAGGVLSVSNALVALYMKCEALEATRDARKVLDEMPDKDALTWTTMVVGYVR 240
Query: 166 SGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASV 225
GD+ AA +F+ + + V WN MISGY SG + +LFR M+ ++ T SV
Sbjct: 241 RGDVGAARSVFEEVDVKFDVVWNAMISGYVHSGMVVEAFELFRRMVLERVPLDEFTFTSV 300
Query: 226 LTACGRSARFNEGRSVHGYTVRTSLKPNII------LDTALIDLYSKCQKVEVAQRVFDS 279
L+AC + F G+SVHG R L+PN + ++ AL+ LYSKC + VA+R+FD+
Sbjct: 301 LSACANAGFFAHGKSVHGQITR--LQPNFVPEAALPVNNALVTLYSKCGNIAVARRIFDN 358
Query: 280 MADRNLVCWNAMILGHCIHGKPEEGIKLFT-----------ALVNGTVAGG--------- 319
M +++V WN ++ G+ ++ +++F +V+G V GG
Sbjct: 359 MKSKDVVSWNTILSGYVESSCLDKAVEVFEEMPYKNELSWMVMVSGYVHGGFSEDALKLF 418
Query: 320 ------SISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAG 373
+ P + T+ G I AC L G++ ++ N A + +YA
Sbjct: 419 NRMRAEDVKPCDYTYAGAISACGELGSLKHGKQLHGHLVQLGFEGSNSAGN-ALITMYAR 477
Query: 374 AELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQG----AVAMVERLAKSFVDMDP 429
+EA + MP + +S+ W +++S G A+ + +R+ + D
Sbjct: 478 CGAVKEANLMFLVMP------NIDSVSWNAMISALGQHGHGREALELFDRMVAEGIYPD- 530
Query: 430 QDFSRYQFLLNVYAV--AGQWEDVARVRELMKKRRMGRMPG----CRLVDL 474
R FL + A +G ++ + E M KR G +PG RL+DL
Sbjct: 531 ----RISFLTVLTACNHSGLVDEGFQYFESM-KRDFGIIPGEDHYTRLIDL 576
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 64/268 (23%), Positives = 123/268 (45%), Gaps = 39/268 (14%)
Query: 128 LINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPE--RNVV 185
LI++Y G + A +F + P ++ S+V+ + +G + AA FD +P+ R+ V
Sbjct: 65 LIHLYTLSGDLPAAATLF-RADPCP-VAATSLVAAYAAAGRLPAAVSFFDAVPQARRDTV 122
Query: 186 SWNIMISGYSKSGNPGCSLKLFREMMKSG-FRGNDKTMASVLTACGRSARFN--EGRSVH 242
N +IS Y+++ + ++ +FR ++ SG R +D + ++L+A G + +
Sbjct: 123 LHNAVISAYARASHAAPAVAVFRSLLASGSLRPDDYSFTALLSAAGHLPNISVRHCAQLQ 182
Query: 243 GYTVRTSLKPNIILDTALIDLYSKCQKVEV---AQRVFDSMADRNLVCWNAMILGHCIHG 299
+++ + + AL+ LY KC+ +E A++V D M D++ + W M++G+ G
Sbjct: 183 CSVLKSGAGGVLSVSNALVALYMKCEALEATRDARKVLDEMPDKDALTWTTMVVGYVRRG 242
Query: 300 KPEEGIKLF-----------TALVNGTVAGG---------------SISPDEITFIGVIC 333
+F A+++G V G + DE TF V+
Sbjct: 243 DVGAARSVFEEVDVKFDVVWNAMISGYVHSGMVVEAFELFRRMVLERVPLDEFTFTSVLS 302
Query: 334 ACVRAELLTEGRKYFRQMIDFYKIKPNF 361
AC A G+ Q+ +++PNF
Sbjct: 303 ACANAGFFAHGKSVHGQIT---RLQPNF 327
Score = 55.5 bits (132), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 52/208 (25%), Positives = 93/208 (44%), Gaps = 16/208 (7%)
Query: 1 MKQLLQIQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIK 60
+K Q+ HL+ G +NS L+ A G+ L+F + N + NA+I
Sbjct: 446 LKHGKQLHGHLVQLGFEGSNSAGNA-LITMYARCGAVKEANLMFLVMPNIDSVSWNAMIS 504
Query: 61 AYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERG-----GMCHGLALK 115
A + + + +M+ G P+ +F+++ +C +G V+ G M +
Sbjct: 505 ALGQHGHGREALELFDRMVAEGIYPDRISFLTVLTACNHSGLVDEGFQYFESMKRDFGII 564
Query: 116 NGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLIS-WNSIVSGHVRSGDMS---- 170
G D LI++ G G + AR++ M S W +I+SG SGDM
Sbjct: 565 PGEDH----YTRLIDLLGRAGRIGEARDLIKTMPFEPTPSIWEAILSGCRTSGDMELGAH 620
Query: 171 AAHELFDIMPERNVVSWNIMISGYSKSG 198
AA +LF + P+ + ++ ++ + YS +G
Sbjct: 621 AADQLFKMTPQHD-GTYILLSNTYSAAG 647
>gi|413933352|gb|AFW67903.1| pentatricopeptide repeat protein PPR868-14 [Zea mays]
Length = 788
Score = 238 bits (608), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 152/454 (33%), Positives = 227/454 (50%), Gaps = 14/454 (3%)
Query: 23 WTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNG 82
WT LL AD G D V + +I + + + Y QM+ +G
Sbjct: 316 WTA-LLDVYADLGDLDGARRVLDAMPARNEVSWGTLIARHEQKGDTAEALKLYSQMLADG 374
Query: 83 FMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCAR 142
PN F S+ +CA + G H ALK G L V +SLI+MY A+
Sbjct: 375 CRPNISCFSSVLSACATLQDLRGGTRIHANALKMGSSTNLFVSSSLIDMYCKCKQCTYAQ 434
Query: 143 NMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGC 202
+F + ++ + WNS++SG+ +G M A LF+ MP RN VSWN MISGY+++ G
Sbjct: 435 RVFNSLPEKNTVCWNSLISGYSWNGKMVEAEGLFNKMPARNSVSWNTMISGYAENRRFGD 494
Query: 203 SLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALID 262
+L F M+ SG + T++SVL AC GR VH V+ ++ NI + TAL D
Sbjct: 495 ALNYFYAMLASGHIPGEITLSSVLLACANLCSLEMGRMVHAEIVKLGIEDNIFMGTALCD 554
Query: 263 LYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALV-NGTVAGGSI 321
+Y+K ++ ++RVF M ++N + W AM+ G +G EE I LF ++ NG I
Sbjct: 555 MYAKSGDLDSSRRVFYQMPEKNNITWTAMVQGLAENGFAEESISLFEDMIENG------I 608
Query: 322 SPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAE 381
+P+E TF+ ++ AC L+ + YF M + I P HY CM ++ A A EAE
Sbjct: 609 APNEHTFLAILFACSHCGLVEQAIHYFETM-QAHGIPPKSKHYTCMVDVLARAGCLPEAE 667
Query: 382 EILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNV 441
E+L K+ + D S W SLLS C + ER AK +++ + + Y L N+
Sbjct: 668 ELLMKVSSELDTSS-----WSSLLSACSTYRNKEIGERAAKKLHELEKDNTAGYVLLSNM 722
Query: 442 YAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLK 475
YA G+W+D A R LM+ + + GC + L+
Sbjct: 723 YASCGKWKDAAETRILMQGASLKKDAGCSWLQLR 756
Score = 163 bits (413), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 104/378 (27%), Positives = 178/378 (47%), Gaps = 36/378 (9%)
Query: 56 NAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALK 115
A+I + + + + +M+ PN T + + +C G + GLA+K
Sbjct: 215 TAMISGFVRNELHKDAFTVFRKMLTCSVRPNVVTLICVIKACVGAGEFDLAMGVVGLAVK 274
Query: 116 -NGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHE 174
N + + V NSLI +Y G AR +F M RD++SW +++ + GD+ A
Sbjct: 275 CNLFEKSIEVHNSLITLYLRMGDAAAARRVFDDMEVRDVVSWTALLDVYADLGDLDGARR 334
Query: 175 LFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSAR 234
+ D MP RN VSW +I+ + + G+ +LKL+ +M+ G R N +SVL+AC
Sbjct: 335 VLDAMPARNEVSWGTLIARHEQKGDTAEALKLYSQMLADGCRPNISCFSSVLSACATLQD 394
Query: 235 FNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILG 294
G +H ++ N+ + ++LID+Y KC++ AQRVF+S+ ++N VCWN++I G
Sbjct: 395 LRGGTRIHANALKMGSSTNLFVSSSLIDMYCKCKQCTYAQRVFNSLPEKNTVCWNSLISG 454
Query: 295 HCIHGKPEEGIKLF-----------TALVNG----------------TVAGGSISPDEIT 327
+ +GK E LF +++G +A G I P EIT
Sbjct: 455 YSWNGKMVEAEGLFNKMPARNSVSWNTMISGYAENRRFGDALNYFYAMLASGHI-PGEIT 513
Query: 328 FIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKM 387
V+ AC L GR +++ I+ N + ++YA + + + + +M
Sbjct: 514 LSSVLLACANLCSLEMGRMVHAEIVKL-GIEDNIFMGTALCDMYAKSGDLDSSRRVFYQM 572
Query: 388 PEDNDNMSFESIMWVSLL 405
PE N+ I W +++
Sbjct: 573 PEKNN------ITWTAMV 584
Score = 91.3 bits (225), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 93/423 (21%), Positives = 168/423 (39%), Gaps = 81/423 (19%)
Query: 87 SYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCF---GAMDCARN 143
S T ++ +GC+ H AL++G+ + V ++L+ Y F G D A
Sbjct: 80 SATSTTMPSYAPSSGCLPLVLSLHAHALRSGLATDRSVASNLLTAYAAFARAGDRDQAFR 139
Query: 144 MFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCS 203
V +++ +VS HV++GD+++A LF MPE++VVS+ M+ K G+ +
Sbjct: 140 DCVAADAASSFTYDFMVSEHVKAGDIASARRLFYGMPEKSVVSYTTMVDALMKRGSVRDA 199
Query: 204 LKL-------------------------------FREMMKSGFRGNDKTMASVLTACGRS 232
++L FR+M+ R N T+ V+ AC +
Sbjct: 200 VELYERCPLHSVAFFTAMISGFVRNELHKDAFTVFRKMLTCSVRPNVVTLICVIKACVGA 259
Query: 233 ARFNEGRSVHGYTVRTSLKP--------------------------------NIILDTAL 260
F+ V G V+ +L +++ TAL
Sbjct: 260 GEFDLAMGVVGLAVKCNLFEKSIEVHNSLITLYLRMGDAAAARRVFDDMEVRDVVSWTAL 319
Query: 261 IDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGS 320
+D+Y+ ++ A+RV D+M RN V W +I H G E +KL++ ++
Sbjct: 320 LDVYADLGDLDGARRVLDAMPARNEVSWGTLIARHEQKGDTAEALKLYSQML-----ADG 374
Query: 321 ISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEA 380
P+ F V+ AC + L G + + N + ++Y + A
Sbjct: 375 CRPNISCFSSVLSACATLQDLRGGTRIHANALKMGS-STNLFVSSSLIDMYCKCKQCTYA 433
Query: 381 EEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLN 440
+ + +PE N ++ W SL+S + G + E L F M ++ + +++
Sbjct: 434 QRVFNSLPEKN------TVCWNSLISGYSWNGKMVEAEGL---FNKMPARNSVSWNTMIS 484
Query: 441 VYA 443
YA
Sbjct: 485 GYA 487
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 61/260 (23%), Positives = 107/260 (41%), Gaps = 19/260 (7%)
Query: 204 LKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDL 263
L L ++SG + +++LTA AR + V + D ++
Sbjct: 100 LSLHAHALRSGLATDRSVASNLLTAYAAFARAGDRDQAFRDCVAADAASSFTYDF-MVSE 158
Query: 264 YSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISP 323
+ K + A+R+F M ++++V + M+ G + ++L+ +VA
Sbjct: 159 HVKAGDIASARRLFYGMPEKSVVSYTTMVDALMKRGSVRDAVELYERCPLHSVA------ 212
Query: 324 DEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEI 383
F +I VR EL + FR+M+ ++PN C+ GA + A +
Sbjct: 213 ---FFTAMISGFVRNELHKDAFTVFRKMLTC-SVRPNVVTLICVIKACVGAGEFDLAMGV 268
Query: 384 LRKMPEDNDNMSFESIMWV--SLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNV 441
+ + N FE + V SL++L G A R+ F DM+ +D + LL+V
Sbjct: 269 VGLAVKCN---LFEKSIEVHNSLITLYLRMGDAAAARRV---FDDMEVRDVVSWTALLDV 322
Query: 442 YAVAGQWEDVARVRELMKKR 461
YA G + RV + M R
Sbjct: 323 YADLGDLDGARRVLDAMPAR 342
Score = 47.0 bits (110), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 46/237 (19%), Positives = 94/237 (39%), Gaps = 24/237 (10%)
Query: 7 IQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSNSC 66
+ A ++ G+ +N F L A G D + VF + A+++ + +
Sbjct: 533 VHAEIVKLGIE-DNIFMGTALCDMYAKSGDLDSSRRVFYQMPEKNNITWTAMVQGLAENG 591
Query: 67 VPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMN 126
++ + + MI+NG PN +TF+++ +C+ G VE+ +G+ +
Sbjct: 592 FAEESISLFEDMIENGIAPNEHTFLAILFACSHCGLVEQAIHYFETMQAHGIPPKSKHYT 651
Query: 127 SLINMYGCFGAMDCARNMFVQMSPR-DLISWNSIVSG-----------------HVRSGD 168
++++ G + A + +++S D SW+S++S H D
Sbjct: 652 CMVDVLARAGCLPEAEELLMKVSSELDTSSWSSLLSACSTYRNKEIGERAAKKLHELEKD 711
Query: 169 MSAAHELFDIMPE-----RNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDK 220
+A + L M ++ I++ G S + GCS R + F +K
Sbjct: 712 NTAGYVLLSNMYASCGKWKDAAETRILMQGASLKKDAGCSWLQLRGQYHAFFSWKEK 768
>gi|357464699|ref|XP_003602631.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355491679|gb|AES72882.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 705
Score = 238 bits (608), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 135/428 (31%), Positives = 234/428 (54%), Gaps = 19/428 (4%)
Query: 56 NAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALK 115
N++I Y + + + +++M+ G P+ T S+ +CA + G H +K
Sbjct: 221 NSLITCYEQNGPAGKALEVFVRMMNCGIEPDEITLASVASACASLSAIREGLQIHARVMK 280
Query: 116 -NGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHE 174
+ +L + N+L++MY ++ AR +F +M RD++S S+VSG+ ++ + AA
Sbjct: 281 HDKYRNDLVLGNALVDMYAKCRRVNEARLVFDRMPLRDVVSETSMVSGYAKASSVKAARL 340
Query: 175 LFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSAR 234
+F M ERNVVSWN +I+GY+++G +++LF + + T ++L AC A
Sbjct: 341 MFSNMMERNVVSWNALIAGYTQNGENEEAVRLFLLLKRESIWPTHYTFGNLLNACANLAD 400
Query: 235 FNEGRSV------HGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCW 288
GR HG+ ++ +I + +LID+Y KC VE + VF+ M +R+ V W
Sbjct: 401 LKLGRQAHTHILKHGFWFKSGEDSDIFVGNSLIDMYMKCGLVEDGRLVFERMLERDNVSW 460
Query: 289 NAMILGHCIHGKPEEGIKLFTA-LVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKY 347
NAMI+G+ +G E +++F LV+G PD +T IGV+ AC A L+ EGR Y
Sbjct: 461 NAMIVGYAQNGYGTEALEIFREMLVSGE------RPDHVTMIGVLSACSHAGLVEEGRCY 514
Query: 348 FRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSL 407
F+ M + + P HY CM +L A +EA +++ MP M ++++W SLL+
Sbjct: 515 FQSMTIEHGLVPVKDHYTCMVDLLGRAGCLDEANNLIQTMP-----MEPDAVVWGSLLAA 569
Query: 408 CRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMP 467
C+ G + + + +A+ +++DP + Y L N+YA G+W+DV RVR+ M++ + + P
Sbjct: 570 CKVHGNITLGKYVAERLLEIDPLNSGPYVLLSNMYAELGRWKDVVRVRKQMRQMGVIKQP 629
Query: 468 GCRLVDLK 475
GC + ++
Sbjct: 630 GCSWISIQ 637
Score = 165 bits (418), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 101/375 (26%), Positives = 179/375 (47%), Gaps = 14/375 (3%)
Query: 86 NSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMF 145
+S F L +C K+ V + H +K E+ + N L+++YG G ++ AR +F
Sbjct: 18 DSSPFAKLLDTCVKSKSVFEARLVHARIIKTQFSSEIFIQNRLVDVYGKCGFLEDARKVF 77
Query: 146 VQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLK 205
M R+ SWN+++ + G + A LF MPER+ SWN M+SG+++ +L+
Sbjct: 78 DHMQQRNTFSWNAVLGALTKFGALDEALNLFKCMPERDQCSWNAMVSGFAQRDRFEEALR 137
Query: 206 LFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYS 265
+M F N+ + S L+AC + G +HG ++ ++ + +AL+D+YS
Sbjct: 138 FVVDMHSEDFVLNEYSFGSALSACAGLMDLSIGVQIHGLIAKSRYSLDVYMGSALVDMYS 197
Query: 266 KCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDE 325
KC+ V AQR FD M RN+V WN++I + +G + +++F ++N I PDE
Sbjct: 198 KCRVVASAQRAFDDMDVRNIVSWNSLITCYEQNGPAGKALEVFVRMMN-----CGIEPDE 252
Query: 326 ITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILR 385
IT V AC + EG + +++ K + + + ++YA EA +
Sbjct: 253 ITLASVASACASLSAIREGLQIHARVMKHDKYRNDLVLGNALVDMYAKCRRVNEARLVFD 312
Query: 386 KMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVA 445
+MP + VS S+ + V+ F +M ++ + L+ Y
Sbjct: 313 RMPLRD---------VVSETSMVSGYAKASSVKAARLMFSNMMERNVVSWNALIAGYTQN 363
Query: 446 GQWEDVARVRELMKK 460
G+ E+ R+ L+K+
Sbjct: 364 GENEEAVRLFLLLKR 378
Score = 127 bits (320), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 100/418 (23%), Positives = 185/418 (44%), Gaps = 74/418 (17%)
Query: 20 NSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMI 79
N+F +L FG+ D + +FKC+ NA++ ++ ++ + F + M
Sbjct: 84 NTFSWNAVLGALTKFGALDEALNLFKCMPERDQCSWNAMVSGFAQRDRFEEALRFVVDMH 143
Query: 80 KNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMD 139
F+ N Y+F S +CA + G HGL K+ ++ + ++L++MY +
Sbjct: 144 SEDFVLNEYSFGSALSACAGLMDLSIGVQIHGLIAKSRYSLDVYMGSALVDMYSKCRVVA 203
Query: 140 CARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGN 199
A+ F M R+++SWNS +I+ Y ++G
Sbjct: 204 SAQRAFDDMDVRNIVSWNS-------------------------------LITCYEQNGP 232
Query: 200 PGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVR-TSLKPNIILDT 258
G +L++F MM G ++ T+ASV +AC + EG +H ++ + +++L
Sbjct: 233 AGKALEVFVRMMNCGIEPDEITLASVASACASLSAIREGLQIHARVMKHDKYRNDLVLGN 292
Query: 259 ALIDLYSKCQKVEVAQRVFD-------------------------------SMADRNLVC 287
AL+D+Y+KC++V A+ VFD +M +RN+V
Sbjct: 293 ALVDMYAKCRRVNEARLVFDRMPLRDVVSETSMVSGYAKASSVKAARLMFSNMMERNVVS 352
Query: 288 WNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKY 347
WNA+I G+ +G+ EE ++LF L SI P TF ++ AC L GR+
Sbjct: 353 WNALIAGYTQNGENEEAVRLFLLLKR-----ESIWPTHYTFGNLLNACANLADLKLGRQA 407
Query: 348 FRQMID---FYKIKPNFAHYW--CMANLYAGAELTEEAEEILRKMPEDNDNMSFESIM 400
++ ++K + + + ++Y L E+ + +M E DN+S+ +++
Sbjct: 408 HTHILKHGFWFKSGEDSDIFVGNSLIDMYMKCGLVEDGRLVFERMLE-RDNVSWNAMI 464
Score = 46.2 bits (108), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 47/225 (20%), Positives = 105/225 (46%), Gaps = 22/225 (9%)
Query: 6 QIQAHLITSGLFFNNS-----FWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIK 60
Q H++ G +F + F +L+ G + LVF+ + NA+I
Sbjct: 406 QAHTHILKHGFWFKSGEDSDIFVGNSLIDMYMKCGLVEDGRLVFERMLERDNVSWNAMIV 465
Query: 61 AYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCH--GLALKNGV 118
Y+ + + + + +M+ +G P+ T + + +C+ G VE G C+ + +++G+
Sbjct: 466 GYAQNGYGTEALEIFREMLVSGERPDHVTMIGVLSACSHAGLVEE-GRCYFQSMTIEHGL 524
Query: 119 DFELPVMNS---LINMYGCFGAMDCARNMF--VQMSPRDLISWNSIVSGHVRSGDMS--- 170
+PV + ++++ G G +D A N+ + M P D + W S+++ G+++
Sbjct: 525 ---VPVKDHYTCMVDLLGRAGCLDEANNLIQTMPMEP-DAVVWGSLLAACKVHGNITLGK 580
Query: 171 -AAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSG 214
A L +I P N + ++ + Y++ G +++ ++M + G
Sbjct: 581 YVAERLLEIDP-LNSGPYVLLSNMYAELGRWKDVVRVRKQMRQMG 624
>gi|356529920|ref|XP_003533534.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At5g15300-like [Glycine max]
Length = 555
Score = 238 bits (608), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 156/512 (30%), Positives = 238/512 (46%), Gaps = 51/512 (9%)
Query: 1 MKQLLQIQAHLITSGLFFNNSFW-------TINLLKHSADFGSPDYTVLVFKCINNPGTF 53
+ L QI A +I +G N F ++++ +A Y V +F I P TF
Sbjct: 14 LGTLRQIHALMIVNGFTSNVGFLRKLVLTTAMSMVGPAATTAVTQYAVQMFAQIPQPDTF 73
Query: 54 CVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLA 113
N I+ S S P V Y QM P+++TF + +C K V G + HG
Sbjct: 74 MWNTYIRGSSQSHDPVHAVALYAQMTHRSVKPDNFTFPLVLKACTKLFWVNTGSVVHGRV 133
Query: 114 LKNGVDFELPVMNSL-------------------------------INMYGCFGAMDCAR 142
+ G + V N+L I Y G + AR
Sbjct: 134 FRLGFGSNVVVRNTLLVFHAKCGDLKVANDIFDDSDKGDVVAWSALIAGYAQRGDLSVAR 193
Query: 143 NMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGC 202
+F +M RDL+SWN +++ + + G+M A LFD P ++VVSWN M+ GY
Sbjct: 194 KLFDEMPKRDLVSWNVMITAYTKHGEMECARRLFDEAPMKDVVSWNAMVGGYVLHNLNQE 253
Query: 203 SLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSL-KPNIILDTALI 261
+L+LF EM + G ++ TM S+L+AC + G VH + + K + +L AL+
Sbjct: 254 ALELFDEMCEVGECPDEVTMLSLLSACADLG--DXGEKVHAKIMELNKGKLSTLLGNALV 311
Query: 262 DLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSI 321
D+Y+KC + VF + D+++V WN++I G HG EE + LF + V
Sbjct: 312 DMYAKCGNIGKGVCVFWLIRDKDMVSWNSVIGGLAFHGHAEESLGLFREMQRTKVC---- 367
Query: 322 SPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAE 381
PDEITF+GV+ AC + EG +YF M + YKI+PN H C+ ++ A A L +EA
Sbjct: 368 -PDEITFVGVLAACSHTGNVDEGNRYFYLMKNKYKIEPNIRHCGCVVDMLARAGLLKEAF 426
Query: 382 EILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNV 441
+ + M + +I+W SLL C+ G V + +R + + M Y L NV
Sbjct: 427 DFIASM-----KIEPNAIVWRSLLGACKVHGDVELAKRATEQLLRMRVDQSGDYVLLSNV 481
Query: 442 YAVAGQWEDVARVRELMKKRRMGRMPGCRLVD 473
YA G+W+ VR+LM + + G V+
Sbjct: 482 YASHGEWDGAENVRKLMDDNGVTKTRGSSFVE 513
>gi|222617104|gb|EEE53236.1| hypothetical protein OsJ_36137 [Oryza sativa Japonica Group]
Length = 542
Score = 238 bits (608), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 144/449 (32%), Positives = 228/449 (50%), Gaps = 38/449 (8%)
Query: 67 VPDQGVVFYLQMIKNGFMPNSYTFVSLFGSC----------AKTGCVER-------GGMC 109
V + V + M+ +G PN++T S+ C A+ CV R GG C
Sbjct: 97 VAGEAVALFALMLWSGPRPNAFTVTSVIKCCLEGRAGLLLRARGRCVARSVREYWPGGRC 156
Query: 110 HGLALKNGVDFELPVMNSLI--NMYGC---FGAMDCARNMFVQMSPRDLISWNSIVSGHV 164
K GVD E+PV N ++ M C G M AR +F M+ RD ISWN+++SG++
Sbjct: 157 -----KEGVD-EMPVKNVVVGNTMVACNVRAGDMGAAREVFDGMAERDPISWNTLMSGYL 210
Query: 165 RSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMAS 224
GD + ELFD M RNV SWN MI+ S+ G+ ++K+F M +GF + TMA
Sbjct: 211 HLGDTATVRELFDEMTVRNVNSWNTMIAACSEEGSLADTVKVFNRMRATGFEPDAATMAV 270
Query: 225 VLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRN 284
+++AC + VHG ++ ++ N + +LID+Y+KC + AQ +F ++
Sbjct: 271 LMSACAQLGSLTIAGQVHGLLQKSCVEMNCHVQNSLIDMYAKCGCISQAQFLFTETYPKD 330
Query: 285 LVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEG 344
V +N MI+ HG + + LF A+V+ + PD +TF+GV+ AC A L+ G
Sbjct: 331 TVSYNVMIIAFAQHGHARDALDLFNAMVD-----SGLQPDAVTFLGVLSACAHAGLVEYG 385
Query: 345 RKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSL 404
+ YF M Y ++ + HY C+ +LY A L EEA ++ MP + + +W +L
Sbjct: 386 KNYFELMKTTYAVQQSPDHYACVVDLYGRAGLIEEAHCFVKTMP-----VKPHAGVWGAL 440
Query: 405 LSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMG 464
L+ CR V + E AK + ++P++ Y L N A QW+ V V+ M+++ +
Sbjct: 441 LNACRKHCHVDVGEIAAKELIRIEPKNPGNYVLLRNTLARGQQWDAVEDVQLSMRRKVID 500
Query: 465 RMPGCRLVDLKEVVEKLKVGHFWRGGMKE 493
+ GC V++ VV + G F+ E
Sbjct: 501 KTAGCSWVEVDSVVHEFLAGDFYHPKFDE 529
>gi|357436955|ref|XP_003588753.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355477801|gb|AES59004.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 600
Score = 238 bits (607), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 152/527 (28%), Positives = 255/527 (48%), Gaps = 53/527 (10%)
Query: 1 MKQLLQIQAHLITSGLFFNNSFWTINLLKHSADFGSPDY-TVLVFKCINNPGT------- 52
+ +L QI A ++ +GL NN S++ S Y T +F + T
Sbjct: 31 LSKLTQIHAFILKTGLQ-NNPLILTKFTSTSSNLNSIHYATSFLFPPSHTTSTPTPSYDA 89
Query: 53 FCVNAVIKAYSNS-CVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHG 111
F N +I+AYS + +FY M++ G PN +TF + CA G + G HG
Sbjct: 90 FLFNTLIRAYSQTRDSKSNSFLFYRTMLRYGVTPNKFTFPFVLKGCAGIGSLRLGKCVHG 149
Query: 112 LALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSA 171
+K G + ++ V+N+LI+MY C G
Sbjct: 150 CVVKFGFEEDVHVLNTLIHMYCCLG-----------------------------EDGFEF 180
Query: 172 AHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGR 231
A ++FD P+ + V+W+ MI+G+ + G ++ LFREM G ++ TM SVL+AC
Sbjct: 181 AEKVFDDSPKMDTVTWSAMIAGFVRLGCSSRAVDLFREMQVMGVCPDEITMVSVLSACAD 240
Query: 232 SARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAM 291
G+ V Y + ++ ++ L ALID+++KC V+ A ++F M R +V W ++
Sbjct: 241 LGALELGKWVESYVEKKNIPKSVELCNALIDMFAKCGNVDKAIKLFRQMDSRTIVSWTSV 300
Query: 292 ILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQM 351
I G +HG+ + + LF +V I+PD++ FIGV+ AC + L+ +GR YF M
Sbjct: 301 IAGLAMHGRGLDAVSLFDEMVE-----NGITPDDVAFIGVLSACSHSGLVDKGRYYFGSM 355
Query: 352 IDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQ 411
+ I P HY CM +L +EA E ++KMP + + I+W ++++ C
Sbjct: 356 ERNFSIVPKVEHYGCMVDLLCRGGFVKEAFEFVQKMPFEPNQ-----IIWRTIITACHAT 410
Query: 412 GAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRL 471
G + + E ++K + +P S Y L N+YA QWE +VRE+M R M ++PG +
Sbjct: 411 GELKLGESISKELIKSEPMHESNYVLLSNIYAKLRQWEKKTKVREMMDMRGMKKVPGSTM 470
Query: 472 VDLKEVVEKLKVG---HFWRGGMKEEVNKM-MECRQSRSLATVSKQL 514
+++ + + G H + E V++M E +++ + T S+ L
Sbjct: 471 IEVNNEMYEFVAGDKSHDQYKEIYEMVDEMGREIKKAGYVPTTSQVL 517
>gi|225439588|ref|XP_002265522.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g08820-like [Vitis vinifera]
Length = 686
Score = 238 bits (607), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 144/481 (29%), Positives = 231/481 (48%), Gaps = 42/481 (8%)
Query: 5 LQIQAH-LITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAYS 63
L ++ H L+ G F + F +L+ A G + VF I + A+I Y
Sbjct: 130 LGVKIHTLVVKGGFDCDVFVKTSLVCLYAKCGYLEDAHKVFDDIPDKNVVSWTAIISGYI 189
Query: 64 NSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELP 123
+ + + ++++ P+S+T V + +C + G + G H
Sbjct: 190 GVGKFREAIDMFRRLLEMNLAPDSFTIVRVLSACTQLGDLNSGEWIHK------------ 237
Query: 124 VMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERN 183
C M RN+FV S+V + + G+M A +FD MPE++
Sbjct: 238 ----------CIMEMGMVRNVFVG---------TSLVDMYAKCGNMEKARSVFDGMPEKD 278
Query: 184 VVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHG 243
+VSW MI GY+ +G P ++ LF +M + + + T+ VL+AC R G V G
Sbjct: 279 IVSWGAMIQGYALNGLPKEAIDLFLQMQRENVKPDCYTVVGVLSACARLGALELGEWVSG 338
Query: 244 YTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEE 303
R N +L TALIDLY+KC + A VF M +++ V WNA+I G ++G +
Sbjct: 339 LVDRNEFLYNPVLGTALIDLYAKCGSMSRAWEVFKGMKEKDRVVWNAIISGLAMNGYVKI 398
Query: 304 GIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAH 363
LF G V I PD TFIG++C C A L+ EGR+YF M F+ + P+ H
Sbjct: 399 SFGLF-----GQVEKLGIKPDGNTFIGLLCGCTHAGLVDEGRRYFNSMYRFFSLTPSIEH 453
Query: 364 YWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKS 423
Y CM +L A L +EA +++R MP M +I+W +LL CR + E K
Sbjct: 454 YGCMVDLLGRAGLLDEAHQLIRNMP-----MEANAIVWGALLGACRIHRDTQLAELALKQ 508
Query: 424 FVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLKEVVEKLKV 483
++++P + Y L N+Y+ +W++ A+VR M ++R+ + PGC +++ +V + V
Sbjct: 509 LIELEPWNSGNYVLLSNIYSANLKWDEAAKVRLSMNEKRIQKPPGCSWIEVDGIVHEFLV 568
Query: 484 G 484
G
Sbjct: 569 G 569
Score = 175 bits (443), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 112/391 (28%), Positives = 188/391 (48%), Gaps = 45/391 (11%)
Query: 27 LLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAY-SNSCVPDQGVVFYLQMIKNGFMP 85
+L+ S DF +YT +F I P F N +I+ SN C D + FY M GF+P
Sbjct: 52 ILRCSFDFSDTNYTRFLFHQIKQPNIFLWNTMIRGLVSNDCF-DDAIEFYGLMRSEGFLP 110
Query: 86 NSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMF 145
N++TF + +CA+ ++ G H L +K G D ++ V SL+ +Y
Sbjct: 111 NNFTFPFVLKACARLLDLQLGVKIHTLVVKGGFDCDVFVKTSLVCLYA------------ 158
Query: 146 VQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLK 205
+ G + AH++FD +P++NVVSW +ISGY G ++
Sbjct: 159 -------------------KCGYLEDAHKVFDDIPDKNVVSWTAIISGYIGVGKFREAID 199
Query: 206 LFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYS 265
+FR +++ + T+ VL+AC + N G +H + + N+ + T+L+D+Y+
Sbjct: 200 MFRRLLEMNLAPDSFTIVRVLSACTQLGDLNSGEWIHKCIMEMGMVRNVFVGTSLVDMYA 259
Query: 266 KCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDE 325
KC +E A+ VFD M ++++V W AMI G+ ++G P+E I LF + V PD
Sbjct: 260 KCGNMEKARSVFDGMPEKDIVSWGAMIQGYALNGLPKEAIDLFLQMQRENV-----KPDC 314
Query: 326 ITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILR 385
T +GV+ AC R L G ++ ++D + N + +LYA A E+ +
Sbjct: 315 YTVVGVLSACARLGALELG-EWVSGLVDRNEFLYNPVLGTALIDLYAKCGSMSRAWEVFK 373
Query: 386 KMPEDNDNMSFESIMWVSLLSLCRFQGAVAM 416
M E + ++W +++S G V +
Sbjct: 374 GMKEK------DRVVWNAIISGLAMNGYVKI 398
>gi|225463844|ref|XP_002265179.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Vitis vinifera]
Length = 617
Score = 238 bits (607), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 132/439 (30%), Positives = 221/439 (50%), Gaps = 42/439 (9%)
Query: 56 NAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALK 115
+I+ Y +GV + +M + T V + SCA+ G + G H ++
Sbjct: 195 TTMIQGYVKMGFAREGVGLFFEMCGENLQADGMTLVIVLSSCARLGDLRLGRKLHRYIIR 254
Query: 116 NG-VDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHE 174
N V+ ++ V N+L++MY ++ GD + A +
Sbjct: 255 NSNVNLDVFVGNALVDMY-------------------------------LKCGDANFARK 283
Query: 175 LFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSAR 234
+F MP +NVVSWN MISG ++ G SL +FR+M + G + +D T+ +VL +C
Sbjct: 284 VFQEMPVKNVVSWNSMISGLAQKGQFKESLYMFRKMQRLGVKPDDVTLVAVLNSCANLGV 343
Query: 235 FNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILG 294
G+ VH Y R ++ + + AL+D+Y+KC ++ A VF +M +++ + AMI+G
Sbjct: 344 LELGKWVHAYLDRNQIRADGFIGNALVDMYAKCGSIDQACWVFQAMNRKDVYSYTAMIVG 403
Query: 295 HCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDF 354
+HG+ + + LF+ + I PDE+TF+GV+ AC L+ EGRKYF M
Sbjct: 404 LAMHGQGGKALDLFSEM-----PKMGIEPDEVTFVGVLTACSHVGLVEEGRKYFEDMSTI 458
Query: 355 YKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAV 414
Y ++P HY CM +L A L EAEE +R MP + D + + +LL C+ G V
Sbjct: 459 YNLRPQLEHYGCMVDLLGRAGLINEAEEFIRNMPIEPD-----AFVLGALLGACKIHGKV 513
Query: 415 AMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDL 474
+ E + K ++P+ Y + N+Y+ A +W D ++R+ MK+R + + PGC ++L
Sbjct: 514 ELGESVMKKIEKIEPRKDGAYVLMSNIYSSANRWRDALKLRKTMKERNLEKTPGCSSIEL 573
Query: 475 KEVVEKLKVGHFWRGGMKE 493
V+ + + G +KE
Sbjct: 574 DGVIHEFQKGDKSHPKIKE 592
Score = 145 bits (366), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 93/338 (27%), Positives = 159/338 (47%), Gaps = 39/338 (11%)
Query: 37 PDYTVLVFKCINNPGTFCVNAVIKAYSNSCVPD-QGVVFYLQMIKNGFMPNSYTFVSLFG 95
P Y + + + P NA+I+ + S +G+V Y QM+ G +P++YT +
Sbjct: 74 PRYALSLLAQLRTPNLPLYNAIIRGLATSNNDSIEGLVVYKQMLSKGIVPDNYTIPFVLK 133
Query: 96 SCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLIS 155
+CA++ V G HG A+K G+ ++ V N+L+ MY + AR
Sbjct: 134 ACAESRAVREGEEVHGQAIKMGLASDVYVSNTLMRMYAVCDVIRSAR------------- 180
Query: 156 WNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGF 215
++FD P+R++VSW MI GY K G + LF EM
Sbjct: 181 ------------------KVFDTSPQRDLVSWTTMIQGYVKMGFAREGVGLFFEMCGENL 222
Query: 216 RGNDKTMASVLTACGRSARFNEGRSVHGYTVRTS-LKPNIILDTALIDLYSKCQKVEVAQ 274
+ + T+ VL++C R GR +H Y +R S + ++ + AL+D+Y KC A+
Sbjct: 223 QADGMTLVIVLSSCARLGDLRLGRKLHRYIIRNSNVNLDVFVGNALVDMYLKCGDANFAR 282
Query: 275 RVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICA 334
+VF M +N+V WN+MI G G+ +E + +F + V PD++T + V+ +
Sbjct: 283 KVFQEMPVKNVVSWNSMISGLAQKGQFKESLYMFRKMQRLGV-----KPDDVTLVAVLNS 337
Query: 335 CVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYA 372
C +L G K+ +D +I+ + + ++YA
Sbjct: 338 CANLGVLELG-KWVHAYLDRNQIRADGFIGNALVDMYA 374
Score = 96.3 bits (238), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 60/225 (26%), Positives = 107/225 (47%), Gaps = 12/225 (5%)
Query: 183 NVVSWNIMISGYSKSGNPGCS-LKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSV 241
N+ +N +I G + S N L ++++M+ G ++ T+ VL AC S EG V
Sbjct: 88 NLPLYNAIIRGLATSNNDSIEGLVVYKQMLSKGIVPDNYTIPFVLKACAESRAVREGEEV 147
Query: 242 HGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKP 301
HG ++ L ++ + L+ +Y+ C + A++VFD+ R+LV W MI G+ G
Sbjct: 148 HGQAIKMGLASDVYVSNTLMRMYAVCDVIRSARKVFDTSPQRDLVSWTTMIQGYVKMGFA 207
Query: 302 EEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNF 361
EG+ LF + G ++ D +T + V+ +C R L GRK R +I + +
Sbjct: 208 REGVGLFFEM-----CGENLQADGMTLVIVLSSCARLGDLRLGRKLHRYIIRNSNVNLDV 262
Query: 362 AHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLS 406
+ ++Y A ++ ++MP N + W S++S
Sbjct: 263 FVGNALVDMYLKCGDANFARKVFQEMPVKN------VVSWNSMIS 301
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 63/272 (23%), Positives = 110/272 (40%), Gaps = 33/272 (12%)
Query: 35 GSPDYTVLVFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLF 94
G ++ VF+ + N++I + + + + +M + G P+ T V++
Sbjct: 276 GDANFARKVFQEMPVKNVVSWNSMISGLAQKGQFKESLYMFRKMQRLGVKPDDVTLVAVL 335
Query: 95 GSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLI 154
SCA G +E G H +N + + + N+L++MY G++D A +F M+ +D+
Sbjct: 336 NSCANLGVLELGKWVHAYLDRNQIRADGFIGNALVDMYAKCGSIDQACWVFQAMNRKDVY 395
Query: 155 SWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSG 214
S+ +++ G G G +L LF EM K G
Sbjct: 396 SYTAMIVGLAMHG-------------------------------QGGKALDLFSEMPKMG 424
Query: 215 FRGNDKTMASVLTACGRSARFNEGRS-VHGYTVRTSLKPNIILDTALIDLYSKCQKVEVA 273
++ T VLTAC EGR + +L+P + ++DL + + A
Sbjct: 425 IEPDEVTFVGVLTACSHVGLVEEGRKYFEDMSTIYNLRPQLEHYGCMVDLLGRAGLINEA 484
Query: 274 QRVFDSMADRNLVCWNAMILGHC-IHGKPEEG 304
+ +M +LG C IHGK E G
Sbjct: 485 EEFIRNMPIEPDAFVLGALLGACKIHGKVELG 516
>gi|15223099|ref|NP_172286.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75174869|sp|Q9LN01.1|PPR21_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g08070
gi|8778839|gb|AAF79838.1|AC026875_18 T6D22.15 [Arabidopsis thaliana]
gi|332190118|gb|AEE28239.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 741
Score = 238 bits (607), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 140/453 (30%), Positives = 234/453 (51%), Gaps = 49/453 (10%)
Query: 56 NAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALK 115
NA+I Y+ + + + + M+K P+ T V++ +CA++G +E G H
Sbjct: 235 NAMISGYAETGNYKEALELFKDMMKTNVRPDESTMVTVVSACAQSGSIELGRQVHLWIDD 294
Query: 116 NGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHEL 175
+G L ++N+LI++Y + G++ A L
Sbjct: 295 HGFGSNLKIVNALIDLYS-------------------------------KCGELETACGL 323
Query: 176 FDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARF 235
F+ +P ++V+SWN +I GY+ +L LF+EM++SG ND TM S+L AC
Sbjct: 324 FERLPYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAI 383
Query: 236 NEGRSVHGYTVR--TSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMIL 293
+ GR +H Y + + L T+LID+Y+KC +E A +VF+S+ ++L WNAMI
Sbjct: 384 DIGRWIHVYIDKRLKGVTNASSLRTSLIDMYAKCGDIEAAHQVFNSILHKSLSSWNAMIF 443
Query: 294 GHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMID 353
G +HG+ + LF+ + I PD+ITF+G++ AC + +L GR FR M
Sbjct: 444 GFAMHGRADASFDLFSRMRKI-----GIQPDDITFVGLLSACSHSGMLDLGRHIFRTMTQ 498
Query: 354 FYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGA 413
YK+ P HY CM +L + L +EAEE++ M + D ++W SLL C+ G
Sbjct: 499 DYKMTPKLEHYGCMIDLLGHSGLFKEAEEMINMMEMEPDG-----VIWCSLLKACKMHGN 553
Query: 414 VAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVD 473
V + E A++ + ++P++ Y L N+YA AG+W +VA+ R L+ + M ++PGC ++
Sbjct: 554 VELGESFAENLIKIEPENPGSYVLLSNIYASAGRWNEVAKTRALLNDKGMKKVPGCSSIE 613
Query: 474 LKEVVEKLKVGHFWRG------GMKEEVNKMME 500
+ VV + +G + GM EE+ ++E
Sbjct: 614 IDSVVHEFIIGDKFHPRNREIYGMLEEMEVLLE 646
Score = 206 bits (523), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 115/347 (33%), Positives = 188/347 (54%), Gaps = 7/347 (2%)
Query: 1 MKQLLQIQAHLITSGLFFNNSFWT--INLLKHSADFGSPDYTVLVFKCINNPGTFCVNAV 58
++ L I A +I GL N + I S F Y + VFK I P N +
Sbjct: 46 LQSLRIIHAQMIKIGLHNTNYALSKLIEFCILSPHFEGLPYAISVFKTIQEPNLLIWNTM 105
Query: 59 IKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGV 118
+ ++ S P + Y+ MI G +PNSYTF + SCAK+ + G HG LK G
Sbjct: 106 FRGHALSSDPVSALKLYVCMISLGLLPNSYTFPFVLKSCAKSKAFKEGQQIHGHVLKLGC 165
Query: 119 DFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDI 178
D +L V SLI+MY G ++ A +F + RD++S+ +++ G+ G + A +LFD
Sbjct: 166 DLDLYVHTSLISMYVQNGRLEDAHKVFDKSPHRDVVSYTALIKGYASRGYIENAQKLFDE 225
Query: 179 MPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEG 238
+P ++VVSWN MISGY+++GN +L+LF++MMK+ R ++ TM +V++AC +S G
Sbjct: 226 IPVKDVVSWNAMISGYAETGNYKEALELFKDMMKTNVRPDESTMVTVVSACAQSGSIELG 285
Query: 239 RSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIH 298
R VH + N+ + ALIDLYSKC ++E A +F+ + ++++ WN +I G+
Sbjct: 286 RQVHLWIDDHGFGSNLKIVNALIDLYSKCGELETACGLFERLPYKDVISWNTLIGGYTHM 345
Query: 299 GKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGR 345
+E + LF ++ +P+++T + ++ AC + GR
Sbjct: 346 NLYKEALLLFQEMLR-----SGETPNDVTMLSILPACAHLGAIDIGR 387
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 44/225 (19%), Positives = 98/225 (43%), Gaps = 19/225 (8%)
Query: 239 RSVHGYTVRTSLKPNIILDTALID---LYSKCQKVEVAQRVFDSMADRNLVCWNAMILGH 295
R +H ++ L + LI+ L + + A VF ++ + NL+ WN M GH
Sbjct: 50 RIIHAQMIKIGLHNTNYALSKLIEFCILSPHFEGLPYAISVFKTIQEPNLLIWNTMFRGH 109
Query: 296 CIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFY 355
+ P +KL+ +++ + P+ TF V+ +C +++ EG++ ++
Sbjct: 110 ALSSDPVSALKLYVCMISL-----GLLPNSYTFPFVLKSCAKSKAFKEGQQIHGHVLKLG 164
Query: 356 KIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVA 415
+ H + ++Y E+A ++ K P + VS +L + +
Sbjct: 165 CDLDLYVHT-SLISMYVQNGRLEDAHKVFDKSPHRD---------VVSYTALIKGYASRG 214
Query: 416 MVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARV-RELMK 459
+E K F ++ +D + +++ YA G +++ + +++MK
Sbjct: 215 YIENAQKLFDEIPVKDVVSWNAMISGYAETGNYKEALELFKDMMK 259
>gi|359472776|ref|XP_002275546.2| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
chloroplastic-like [Vitis vinifera]
Length = 896
Score = 238 bits (607), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 143/497 (28%), Positives = 237/497 (47%), Gaps = 53/497 (10%)
Query: 6 QIQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSNS 65
+I A+++ + NSF L+ + + VF I NA+I Y+ +
Sbjct: 318 EIHAYVLRNNDLIENSFVGSALVDMYCNCRQVESGRRVFDHILGRRIELWNAMISGYARN 377
Query: 66 CVPDQGVVFYLQMIK-NGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPV 124
+ ++ ++ +++MIK G +PN+ T S+ +C HG A+K G + V
Sbjct: 378 GLDEKALILFIEMIKVAGLLPNTTTMASVMPACVHCEAFSNKESIHGYAVKLGFKEDRYV 437
Query: 125 MNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNV 184
N+L++MY G MD + +FD M R+
Sbjct: 438 QNALMDMYSRMGKMDISET-------------------------------IFDSMEVRDR 466
Query: 185 VSWNIMISGYSKSGNPGCSLKLFREMMK-----------------SGFRGNDKTMASVLT 227
VSWN MI+GY SG +L L EM + ++ N T+ +VL
Sbjct: 467 VSWNTMITGYVLSGRYSNALVLLHEMQRMENTKDVKKDDNDDEKGGPYKPNAITLMTVLP 526
Query: 228 ACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVC 287
C A +G+ +H Y +R L +I + +AL+D+Y+KC + +++RVF+ M ++N++
Sbjct: 527 GCAALAAIAKGKEIHAYAIRNMLASDITVGSALVDMYAKCGCLNLSRRVFNEMPNKNVIT 586
Query: 288 WNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKY 347
WN +I+ +HGK EE ++LF +V GG P+E+TFI V AC + L++EG
Sbjct: 587 WNVLIMACGMHGKGEEALELFKNMVAEAGRGGEAKPNEVTFITVFAACSHSGLISEGLNL 646
Query: 348 FRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSL 407
F +M + ++P HY C+ +L A EEA E++ MP + D + W SLL
Sbjct: 647 FYRMKHDHGVEPTSDHYACVVDLLGRAGQLEEAYELVNTMPAEFDKVG----AWSSLLGA 702
Query: 408 CRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMP 467
CR V + E AK+ + ++P S Y L N+Y+ AG W VR+ M++ + + P
Sbjct: 703 CRIHQNVELGEVAAKNLLHLEPNVASHYVLLSNIYSSAGLWNKAMEVRKNMRQMGVKKEP 762
Query: 468 GCRLVDLKEVVEKLKVG 484
GC ++ ++ V K G
Sbjct: 763 GCSWIEFRDEVHKFMAG 779
Score = 121 bits (304), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 105/388 (27%), Positives = 178/388 (45%), Gaps = 51/388 (13%)
Query: 43 VFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGC 102
VF I + N+ I A +Q + + M +S+T VS+ +C+ G
Sbjct: 150 VFDRITDRDQVSWNSFIAALCRFEKWEQALEAFRAMQMENMELSSFTLVSVALACSNLGV 209
Query: 103 ---VERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSI 159
+ G HG +L+ G D + N+L+ MY G +D ++
Sbjct: 210 MHGLRLGKQLHGYSLRVG-DQKTFTNNALMAMYAKLGRVDDSK----------------- 251
Query: 160 VSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGND 219
LF+ +R++VSWN MIS +S+S +L FR M+ G +
Sbjct: 252 --------------ALFESFVDRDMVSWNTMISSFSQSDRFSEALAFFRLMVLEGVELDG 297
Query: 220 KTMASVLTACGRSARFNEGRSVHGYTVRTS-LKPNIILDTALIDLYSKCQKVEVAQRVFD 278
T+ASVL AC R + G+ +H Y +R + L N + +AL+D+Y C++VE +RVFD
Sbjct: 298 VTIASVLPACSHLERLDVGKEIHAYVLRNNDLIENSFVGSALVDMYCNCRQVESGRRVFD 357
Query: 279 SMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRA 338
+ R + WNAMI G+ +G E+ + LF ++ VAG + P+ T V+ ACV
Sbjct: 358 HILGRRIELWNAMISGYARNGLDEKALILFIEMIK--VAG--LLPNTTTMASVMPACVHC 413
Query: 339 ELLTEGRKYFRQMIDFYKIKPNFAHYWCMAN----LYAGAELTEEAEEILRKMPEDNDNM 394
E + ++ I Y +K F + N +Y+ + +E I M E D +
Sbjct: 414 EAFSN-----KESIHGYAVKLGFKEDRYVQNALMDMYSRMGKMDISETIFDSM-EVRDRV 467
Query: 395 SFESIMWVSLLSLCRFQGAVAMVERLAK 422
S+ +++ +LS R+ A+ ++ + +
Sbjct: 468 SWNTMITGYVLS-GRYSNALVLLHEMQR 494
Score = 119 bits (299), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 107/442 (24%), Positives = 183/442 (41%), Gaps = 65/442 (14%)
Query: 2 KQLLQIQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKA 61
KQL + F NN+ L+ A G D + +F+ + N +I +
Sbjct: 217 KQLHGYSLRVGDQKTFTNNA-----LMAMYAKLGRVDDSKALFESFVDRDMVSWNTMISS 271
Query: 62 YSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFE 121
+S S + + F+ M+ G + T S+ +C+ ++ G H L+N E
Sbjct: 272 FSQSDRFSEALAFFRLMVLEGVELDGVTIASVLPACSHLERLDVGKEIHAYVLRNNDLIE 331
Query: 122 LPVMNS-LINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMP 180
+ S L++MY ++ R +F + R + WN+++SG+ R+G +
Sbjct: 332 NSFVGSALVDMYCNCRQVESGRRVFDHILGRRIELWNAMISGYARNG-----------LD 380
Query: 181 ERNVVSWNIMISGYSKSGNPGCSLKLFREMMK-SGFRGNDKTMASVLTACGRSARFNEGR 239
E+ +L LF EM+K +G N TMASV+ AC F+
Sbjct: 381 EK--------------------ALILFIEMIKVAGLLPNTTTMASVMPACVHCEAFSNKE 420
Query: 240 SVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHG 299
S+HGY V+ K + + AL+D+YS+ K+++++ +FDSM R+ V WN MI G+ + G
Sbjct: 421 SIHGYAVKLGFKEDRYVQNALMDMYSRMGKMDISETIFDSMEVRDRVSWNTMITGYVLSG 480
Query: 300 KPEEGIKLFTAL------------VNGTVAGGSISPDEITFIGVICACVRAELLTEGRKY 347
+ + L + N GG P+ IT + V+ C + +G++
Sbjct: 481 RYSNALVLLHEMQRMENTKDVKKDDNDDEKGGPYKPNAITLMTVLPGCAALAAIAKGKE- 539
Query: 348 FRQMIDFYKIKPNFAHYW----CMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVS 403
I Y I+ A + ++YA + + +MP N I W
Sbjct: 540 ----IHAYAIRNMLASDITVGSALVDMYAKCGCLNLSRRVFNEMPNKN------VITWNV 589
Query: 404 LLSLCRFQGAVAMVERLAKSFV 425
L+ C G L K+ V
Sbjct: 590 LIMACGMHGKGEEALELFKNMV 611
Score = 86.3 bits (212), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 69/281 (24%), Positives = 125/281 (44%), Gaps = 41/281 (14%)
Query: 70 QGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGV-DFELPVMNSL 128
+ + Y++M +G P+++ F ++ + + ++ G H A+K G + V N+L
Sbjct: 75 EAISTYIEMTVSGARPDNFAFPAVLKAVSGLQDLKTGEQIHAAAVKFGYGSSSVTVANTL 134
Query: 129 INMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWN 188
+NMYG G + GD+ ++FD + +R+ VSWN
Sbjct: 135 VNMYGKCGGI----------------------------GDVC---KVFDRITDRDQVSWN 163
Query: 189 IMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTAC---GRSARFNEGRSVHGYT 245
I+ + +L+ FR M + T+ SV AC G G+ +HGY+
Sbjct: 164 SFIAALCRFEKWEQALEAFRAMQMENMELSSFTLVSVALACSNLGVMHGLRLGKQLHGYS 223
Query: 246 VRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGI 305
+R + AL+ +Y+K +V+ ++ +F+S DR++V WN MI + E +
Sbjct: 224 LRVG-DQKTFTNNALMAMYAKLGRVDDSKALFESFVDRDMVSWNTMISSFSQSDRFSEAL 282
Query: 306 KLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRK 346
F +V + G + D +T V+ AC E L G++
Sbjct: 283 AFFRLMV---LEG--VELDGVTIASVLPACSHLERLDVGKE 318
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/133 (25%), Positives = 62/133 (46%), Gaps = 1/133 (0%)
Query: 180 PERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGR 239
P R+ SW + ++S + ++ + EM SG R ++ +VL A G
Sbjct: 53 PSRSTASWVDALRSRTRSNDFREAISTYIEMTVSGARPDNFAFPAVLKAVSGLQDLKTGE 112
Query: 240 SVHGYTVRTSL-KPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIH 298
+H V+ ++ + L+++Y KC + +VFD + DR+ V WN+ I C
Sbjct: 113 QIHAAAVKFGYGSSSVTVANTLVNMYGKCGGIGDVCKVFDRITDRDQVSWNSFIAALCRF 172
Query: 299 GKPEEGIKLFTAL 311
K E+ ++ F A+
Sbjct: 173 EKWEQALEAFRAM 185
>gi|225440839|ref|XP_002276333.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g11290-like [Vitis vinifera]
Length = 705
Score = 238 bits (606), Expect = 7e-60, Method: Compositional matrix adjust.
Identities = 127/442 (28%), Positives = 227/442 (51%), Gaps = 41/442 (9%)
Query: 43 VFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGC 102
+F + +A+I AY + + + M+ +G +P+ T SL +C+
Sbjct: 188 IFDRMEEKNVISWSAMIAAYGYHGQGRKALDLFRMMLSSGMLPDKITLASLLYACSDLKN 247
Query: 103 VERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSG 162
++ G + H + K G+D + V +L++MYG
Sbjct: 248 LQMGRLIHHIVYKFGLDLDHFVCAALVDMYG----------------------------- 278
Query: 163 HVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTM 222
+ ++ A LFD MPER++V+W +MI GY++ GN SL LF +M + G + M
Sbjct: 279 --KCREIEDARFLFDKMPERDLVTWTVMIGGYAECGNANESLVLFDKMREEGVVPDKVAM 336
Query: 223 ASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMAD 282
+V+ AC + ++ R++ Y R + ++IL TA+ID+++KC VE A+ +FD M +
Sbjct: 337 VTVVFACAKLGAMHKARTIDDYIQRKKFQLDVILGTAMIDMHAKCGCVESAREIFDRMEE 396
Query: 283 RNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLT 342
+N++ W+AMI + HG+ + + LF ++ I P++IT + ++ AC A L+
Sbjct: 397 KNVISWSAMIAAYGYHGQGRKALDLFPMMLR-----SGILPNKITLVSLLYACSHAGLVE 451
Query: 343 EGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWV 402
EG ++F M + Y ++ + HY C+ +L A +EA +++ M + D +W
Sbjct: 452 EGLRFFSLMWEDYSVRADVKHYTCVVDLLGRAGRLDEALKLIESMTVEKDEG-----LWG 506
Query: 403 SLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRR 462
+ L CR V + E+ A S +++ PQ+ Y L N+YA AG+WEDVA+ R+LM +RR
Sbjct: 507 AFLGACRTHKDVVLAEKAATSLLELQPQNPGHYILLSNIYANAGRWEDVAKTRDLMSQRR 566
Query: 463 MGRMPGCRLVDLKEVVEKLKVG 484
+ ++PG +++ + VG
Sbjct: 567 LKKIPGWTWIEVDNKSHQFSVG 588
Score = 147 bits (371), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 88/319 (27%), Positives = 156/319 (48%), Gaps = 41/319 (12%)
Query: 75 YLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGC 134
+ ++I+ G P++YT + +C ++ G + H + K G+D + V +L++MY
Sbjct: 18 FRELIRCGARPDNYTLPFVIRACRDLKNLQMGRLIHHIVYKFGLDLDHFVCAALVDMY-- 75
Query: 135 FGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGY 194
V+ ++ A LFD M ER++V+W +MI GY
Sbjct: 76 -----------------------------VKCREIEDARFLFDKMQERDLVTWTVMIGGY 106
Query: 195 SKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNI 254
++ G SL LF +M + G + M +V+ AC + ++ R + Y R + ++
Sbjct: 107 AECGKANESLVLFEKMREEGVVPDKVAMVTVVFACAKLGAMHKARIIDDYIQRKKFQLDV 166
Query: 255 ILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNG 314
IL TA+ID+Y+KC VE A+ +FD M ++N++ W+AMI + HG+ + + LF +++
Sbjct: 167 ILGTAMIDMYAKCGCVESAREIFDRMEEKNVISWSAMIAAYGYHGQGRKALDLFRMMLS- 225
Query: 315 TVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMA--NLYA 372
+ PD+IT ++ AC + L GR + YK + H+ C A ++Y
Sbjct: 226 ----SGMLPDKITLASLLYACSDLKNLQMGRLIHHIV---YKFGLDLDHFVCAALVDMYG 278
Query: 373 GAELTEEAEEILRKMPEDN 391
E+A + KMPE +
Sbjct: 279 KCREIEDARFLFDKMPERD 297
Score = 135 bits (341), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 90/357 (25%), Positives = 159/357 (44%), Gaps = 43/357 (12%)
Query: 56 NAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALK 115
+I Y+ ++ +V + +M + G +P+ V++ +CAK G + + + +
Sbjct: 100 TVMIGGYAECGKANESLVLFEKMREEGVVPDKVAMVTVVFACAKLGAMHKARIIDDYIQR 159
Query: 116 NGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHEL 175
++ + ++I+MY G ++ AR E+
Sbjct: 160 KKFQLDVILGTAMIDMYAKCGCVESAR-------------------------------EI 188
Query: 176 FDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARF 235
FD M E+NV+SW+ MI+ Y G +L LFR M+ SG + T+AS+L AC
Sbjct: 189 FDRMEEKNVISWSAMIAAYGYHGQGRKALDLFRMMLSSGMLPDKITLASLLYACSDLKNL 248
Query: 236 NEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGH 295
GR +H + L + + AL+D+Y KC+++E A+ +FD M +R+LV W MI G+
Sbjct: 249 QMGRLIHHIVYKFGLDLDHFVCAALVDMYGKCREIEDARFLFDKMPERDLVTWTVMIGGY 308
Query: 296 CIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFY 355
G E + LF + V PD++ + V+ AC + + + R I
Sbjct: 309 AECGNANESLVLFDKMREEGVV-----PDKVAMVTVVFACAKLGAMHKART-IDDYIQRK 362
Query: 356 KIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQG 412
K + + M +++A E A EI +M E N I W ++++ + G
Sbjct: 363 KFQLDVILGTAMIDMHAKCGCVESAREIFDRMEEKN------VISWSAMIAAYGYHG 413
Score = 98.2 bits (243), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 64/227 (28%), Positives = 109/227 (48%), Gaps = 20/227 (8%)
Query: 190 MISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTS 249
M+ G++K G+ FRE+++ G R ++ T+ V+ AC GR +H +
Sbjct: 1 MVGGFAKVGDYINCFGTFRELIRCGARPDNYTLPFVIRACRDLKNLQMGRLIHHIVYKFG 60
Query: 250 LKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFT 309
L + + AL+D+Y KC+++E A+ +FD M +R+LV W MI G+ GK E + LF
Sbjct: 61 LDLDHFVCAALVDMYVKCREIEDARFLFDKMQERDLVTWTVMIGGYAECGKANESLVLFE 120
Query: 310 ALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFY----KIKPNFAHYW 365
+ V PD++ + V+ AC + + + R +ID Y K + +
Sbjct: 121 KMREEGVV-----PDKVAMVTVVFACAKLGAMHKAR-----IIDDYIQRKKFQLDVILGT 170
Query: 366 CMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQG 412
M ++YA E A EI +M E N I W ++++ + G
Sbjct: 171 AMIDMYAKCGCVESAREIFDRMEEKN------VISWSAMIAAYGYHG 211
>gi|51535410|dbj|BAD37280.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|125596587|gb|EAZ36367.1| hypothetical protein OsJ_20695 [Oryza sativa Japonica Group]
gi|218197849|gb|EEC80276.1| hypothetical protein OsI_22264 [Oryza sativa Indica Group]
Length = 517
Score = 238 bits (606), Expect = 7e-60, Method: Compositional matrix adjust.
Identities = 145/510 (28%), Positives = 250/510 (49%), Gaps = 47/510 (9%)
Query: 2 KQLLQIQAHLITSGLFFNN-SFWTINLLKHSADF-GSPDYTVLVFKCINNPGTFCVNAVI 59
+ + QI HL+ G+ LL A F G Y VF I P F NA++
Sbjct: 12 RAVRQIHGHLVVGGIAAARLQHLRELLLSCVATFRGRMGYARKVFDGIPRPDLFMHNAMV 71
Query: 60 KAYSNSCVPDQGVVFYLQMIKNGFM-PNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGV 118
+ Y+++ P Y +M + + P+++TF L +CA G HG +K G
Sbjct: 72 RGYAHAGAPGDAFAVYRRMTEASRLRPDAFTFCYLLRACAGLPGSRAGRQVHGAVVKLGF 131
Query: 119 DFELPVMNSLINMYG-------------------------------CFGAMDCARNMFVQ 147
+ V N+LINM+ G M AR MF +
Sbjct: 132 LKDAYVRNALINMFAKCGDLRVASVLLDEAGEGDVVAWSAVIAGHAARGDMAAARKMFDE 191
Query: 148 MSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLF 207
+ +D++ WN ++ + + G+M A ELFD PE++VVSWN +I+GY+ G +L++F
Sbjct: 192 CTHKDIVCWNVMLGAYAKHGEMENARELFDRAPEKDVVSWNTIITGYAAQGMLKHALEVF 251
Query: 208 REMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKP--NIILDTALIDLYS 265
EM +G+ ++ T+ S+L+ C + + GR +H + + +P +I++ AL+ +Y+
Sbjct: 252 DEMRAAGWTPDEATIVSLLSCCANTGLLDAGRMIH-HQLHLERRPWISIVVGNALVSMYA 310
Query: 266 KCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDE 325
KC + A F++M D ++ WN++I G HG+ E+ ++ F ++ I P+E
Sbjct: 311 KCGDLHTAVEGFNTMKDTDVWTWNSVIGGLAFHGQAEQSVRFFKKMLE-----KRIHPNE 365
Query: 326 ITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILR 385
I+F+ V+ AC A L+ +G+K+F M D Y I+PN HY C+ ++ A L +EA I+
Sbjct: 366 ISFLCVLGACSHAGLVEDGQKFFYLMKDRYGIEPNARHYSCIVDMLGRAGLLDEAYAIVS 425
Query: 386 KMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVA 445
M +++W +LL CR G + + + + + ++M+ + Y L +YA +
Sbjct: 426 NM-----RCEPSAVVWRTLLGACRTHGNMTLGKLVREKLLNMNEDASADYVLLSGIYASS 480
Query: 446 GQWEDVARVRELMKKRRMGRMPGCRLVDLK 475
G+W V R M +R + + G +D K
Sbjct: 481 GEWLGVETERRSMDRRGIRKAAGYAQIDRK 510
>gi|225424928|ref|XP_002270695.1| PREDICTED: pentatricopeptide repeat-containing protein At2g02750
[Vitis vinifera]
gi|296086418|emb|CBI32007.3| unnamed protein product [Vitis vinifera]
Length = 617
Score = 238 bits (606), Expect = 7e-60, Method: Compositional matrix adjust.
Identities = 137/435 (31%), Positives = 230/435 (52%), Gaps = 19/435 (4%)
Query: 43 VFKCINNPGTFCVNAVIKAYSNSCVPDQGV-VFYLQMIKNGFMPNSYTFVSLFGSCAKTG 101
VF I + NA I + P VF + +G +PNS T VS+ +C+K
Sbjct: 188 VFDQILDKNVVSYNAFISGLLQNGAPHLVFDVFKDLLESSGEVPNSVTLVSILSACSKLL 247
Query: 102 CVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMS-PRDLISWNSIV 160
+ G HGL +K ++F+ V +L++MY G A +F+++S R+L++WNS++
Sbjct: 248 YIRFGRQIHGLVVKIEINFDTMVGTALVDMYSKCGCWHWAYGIFIELSGSRNLVTWNSMI 307
Query: 161 SGHVRSGDMSAAHELFDIMP----ERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFR 216
+G + +G A ELF+ + E + +WN MISG+S+ G + K F +M +G
Sbjct: 308 AGMMLNGQSDIAVELFEQLEPEGLEPDSATWNTMISGFSQQGQVVEAFKFFHKMQSAGVI 367
Query: 217 GNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRV 276
+ K++ S+L AC + G+ +HG+T+RT++ + + TALID+Y KC +A+RV
Sbjct: 368 ASLKSITSLLRACSALSALQSGKEIHGHTIRTNIDTDEFISTALIDMYMKCGHSYLARRV 427
Query: 277 F--DSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICA 334
F + + WNAMI G+ +GK + ++F + V P+ T + ++
Sbjct: 428 FCQFQIKPDDPAFWNAMISGYGRNGKYQSAFEIFNQMQEEKV-----QPNSATLVSILSV 482
Query: 335 CVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNM 394
C + G + F+ M Y + P H+ CM +L + +EA+E++ +MPE + +
Sbjct: 483 CSHTGEIDRGWQLFKMMNRDYGLNPTSEHFGCMVDLLGRSGRLKEAQELIHEMPEASVS- 541
Query: 395 SFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARV 454
++ SLL CR A+ E +AK +++PQD + + L N+YAV G+W DV RV
Sbjct: 542 -----VFASLLGACRHHSDSALGEEMAKKLSELEPQDPTPFVILSNIYAVQGRWGDVERV 596
Query: 455 RELMKKRRMGRMPGC 469
RE+M R + + PGC
Sbjct: 597 REMMNDRGLKKPPGC 611
Score = 122 bits (307), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 85/315 (26%), Positives = 155/315 (49%), Gaps = 41/315 (13%)
Query: 39 YTVLVFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCA 98
Y + VF+ + + +N I +S + + + + Q+ F PNS T S+ +CA
Sbjct: 86 YALKVFEEMPHRNLPSLNVTISGFSRNGYFREALGAFKQVGLGNFRPNSVTIASVLPACA 145
Query: 99 KTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNS 158
VE G H LA+K GV+ ++ V +++ MY G + A+ +F Q+ ++++S+N+
Sbjct: 146 S---VELDGQVHCLAIKLGVESDIYVATAVVTMYSNCGELVLAKKVFDQILDKNVVSYNA 202
Query: 159 IVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMK-SGFRG 217
+SG +++G A H +FD+ F+++++ SG
Sbjct: 203 FISGLLQNG---APHLVFDV----------------------------FKDLLESSGEVP 231
Query: 218 NDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVF 277
N T+ S+L+AC + GR +HG V+ + + ++ TAL+D+YSKC A +F
Sbjct: 232 NSVTLVSILSACSKLLYIRFGRQIHGLVVKIEINFDTMVGTALVDMYSKCGCWHWAYGIF 291
Query: 278 DSMA-DRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACV 336
++ RNLV WN+MI G ++G+ + ++LF L + PD T+ +I
Sbjct: 292 IELSGSRNLVTWNSMIAGMMLNGQSDIAVELFEQL-----EPEGLEPDSATWNTMISGFS 346
Query: 337 RAELLTEGRKYFRQM 351
+ + E K+F +M
Sbjct: 347 QQGQVVEAFKFFHKM 361
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 74/292 (25%), Positives = 140/292 (47%), Gaps = 41/292 (14%)
Query: 70 QGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLI 129
+ + Y ++ + + + +TF L + AK +G + H +K G ++ +L
Sbjct: 16 EALSLYSKLHSSSVLEHKFTFPFLLKASAKLNSPLQGQILHTQLIKTGFHLDIYAATALA 75
Query: 130 NMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNI 189
+MY ++ +S A ++F+ MP RN+ S N+
Sbjct: 76 DMY-------------------------------MKLHLLSYALKVFEEMPHRNLPSLNV 104
Query: 190 MISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTS 249
ISG+S++G +L F+++ FR N T+ASVL AC A VH ++
Sbjct: 105 TISGFSRNGYFREALGAFKQVGLGNFRPNSVTIASVLPAC---ASVELDGQVHCLAIKLG 161
Query: 250 LKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFT 309
++ +I + TA++ +YS C ++ +A++VFD + D+N+V +NA I G +G P +F
Sbjct: 162 VESDIYVATAVVTMYSNCGELVLAKKVFDQILDKNVVSYNAFISGLLQNGAPHLVFDVFK 221
Query: 310 ALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNF 361
L+ + G + P+ +T + ++ AC + + GR+ ++ KI+ NF
Sbjct: 222 DLLESS---GEV-PNSVTLVSILSACSKLLYIRFGRQIHGLVV---KIEINF 266
>gi|297804050|ref|XP_002869909.1| binding protein [Arabidopsis lyrata subsp. lyrata]
gi|297315745|gb|EFH46168.1| binding protein [Arabidopsis lyrata subsp. lyrata]
Length = 595
Score = 238 bits (606), Expect = 7e-60, Method: Compositional matrix adjust.
Identities = 142/489 (29%), Positives = 251/489 (51%), Gaps = 45/489 (9%)
Query: 1 MKQLLQIQAHLITSGLFFNNSFWTINLLKHSADFGSP---DYTVLVFKCINNP-GTFCVN 56
+ +L QI A I +G+ +++ +L+ + SP Y VF I P F N
Sbjct: 30 LTKLRQIHAFSIRNGVSISDAELGKHLIFYLVSLPSPPPMSYAHKVFSKIEKPINVFIWN 89
Query: 57 AVIKAYSNSCVPDQGVVFYLQMIKNGFM-PNSYTFVSLFGSCAKTGCVERGGMCHGLALK 115
+I+ Y+ V Y +M +GF+ P+++T+ L + K V G H + ++
Sbjct: 90 TLIRGYAEIGNSVSAVSLYREMRASGFVEPDTHTYPFLLKAVGKMADVRLGETIHSVVIR 149
Query: 116 NGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHEL 175
+G + V NSL+++Y +C GD+++A+++
Sbjct: 150 SGFGSLIYVQNSLLHLYA-----NC--------------------------GDVASAYKV 178
Query: 176 FDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARF 235
FD MPE+++V+WN +I+G++++G P +L L+ EM G + + T+ S+L+AC +
Sbjct: 179 FDKMPEKDLVAWNSVINGFAENGKPEEALALYTEMDLKGIKPDGFTIVSLLSACAKIGAL 238
Query: 236 NEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGH 295
G+ H Y ++ L N+ L+DLY++C +VE A+ +FD M D+N V W ++I+G
Sbjct: 239 TLGKRFHVYMIKVGLTRNLHSSNVLLDLYARCGRVEEAKTLFDEMVDKNSVSWTSLIVGL 298
Query: 296 CIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFY 355
++G +E I+LF + + + P EITF+G++ AC ++ EG +YFR+M + Y
Sbjct: 299 AVNGLGKEAIELFKNMESKE----GLLPCEITFVGILYACSHCGMVKEGFEYFRRMSEEY 354
Query: 356 KIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVA 415
KI+P H+ CM +L A A ++A E + KMP M ++W +LL C G
Sbjct: 355 KIEPRIEHFGCMVDLLARAGQVKKAYEYILKMP-----MQPNVVIWRTLLGACTVHGDSD 409
Query: 416 MVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLK 475
+ E + ++P Y L N+YA +W DV ++R+ M + + ++PG LV++
Sbjct: 410 LAELARMKILQLEPNHSGDYVLLSNMYASEQRWSDVQKIRKQMLRDGVRKVPGHSLVEVG 469
Query: 476 EVVEKLKVG 484
V + +G
Sbjct: 470 NRVHEFLMG 478
>gi|255564780|ref|XP_002523384.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223537334|gb|EEF38963.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 538
Score = 238 bits (606), Expect = 7e-60, Method: Compositional matrix adjust.
Identities = 140/487 (28%), Positives = 246/487 (50%), Gaps = 15/487 (3%)
Query: 1 MKQLLQIQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNP-GTFCVNAVI 59
+K L Q A ++ L +N ++ ++ S+ G Y +F + +P F N +I
Sbjct: 24 LKHLHQTHAFMLCRALDHDNLLLSL-FIQSSSSLGFSLYAYSLFTSLTHPPNIFLYNTII 82
Query: 60 KAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVD 119
+A S S P + + ++ P+SY+F + + + G H A++ G+
Sbjct: 83 RALSLSPQPSLSIFLFNRIQSARLRPDSYSFPFALKAVIRLSATKTGLQFHSQAIRFGLH 142
Query: 120 FELPVMNSLINMYGCFGAMDCARNMF--VQMSPRDLISWNSIVSGHVRSGDMSAAHELFD 177
L V+ SLI MY D AR +F + ++ R++ WN++++ + + DM A LFD
Sbjct: 143 SHLHVLVSLIRMYSSSHISD-ARKLFDGIPLTARNVALWNAMLTSYAKICDMPNAQHLFD 201
Query: 178 IMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNE 237
MP+RN++SW +ISGY+ P ++ +FR M ++ T+ +VL+AC +
Sbjct: 202 SMPQRNLISWTALISGYAHINRPHQAIAIFRTMQLQNVVPDEITLLAVLSACAQLGALEL 261
Query: 238 GRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCI 297
G + Y L N+ L ALID+Y+K ++ A +F+SM + +V W MI G +
Sbjct: 262 GEWIRNYIDIHGLHRNVPLHNALIDMYAKSGNIKRALLIFESMKHKTIVTWTTMIAGLAL 321
Query: 298 HGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKI 357
HG + +++F+ + V P+EITFI V+ AC L+ R +F M Y I
Sbjct: 322 HGLGTQALEMFSRMERDRV-----KPNEITFIAVLSACSHVGLVQLARSFFTNMRSRYTI 376
Query: 358 KPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMV 417
+P HY CM +L A +EA+++L++MP + + + +W SLL+ G +
Sbjct: 377 QPKIEHYGCMIDLLGRAGYLQEAQQLLQQMPFEPN-----AAIWGSLLAASYTHGDAMLG 431
Query: 418 ERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLKEV 477
ER K ++++P + Y L N+YA G+W+ VR++M+ R + ++PG +++
Sbjct: 432 ERTLKHLIELEPNNSGNYALLSNIYASLGRWKASRIVRKMMRDRGVKKIPGGSFIEVNNR 491
Query: 478 VEKLKVG 484
V + G
Sbjct: 492 VNEFIAG 498
>gi|357153075|ref|XP_003576330.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At4g18840-like [Brachypodium distachyon]
Length = 535
Score = 238 bits (606), Expect = 8e-60, Method: Compositional matrix adjust.
Identities = 148/494 (29%), Positives = 230/494 (46%), Gaps = 59/494 (11%)
Query: 6 QIQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVL-VFKCINNPGTFCVNAVIKAYSN 64
Q+ A LI GL + + L + S +L C +P + + I A ++
Sbjct: 33 QLHAVLIKHGLLHHPASLRALLSRLPPSSASTLALLLSAAPCSLSPPLY--SPAIAALAS 90
Query: 65 SCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKT------------GCVERGGMCHGL 112
S P + + ++ + F +L SCA+ G V +G HG
Sbjct: 91 SPYPAASLAVFNRVSRLSLPIPLPAFPALLKSCARAFNLCAAADGGGEGFVSKGMELHGC 150
Query: 113 ALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGH--------- 163
LK G + V N+L++MYG G + AR +F M R+ +SWN++V+ H
Sbjct: 151 VLKLGCGADRYVQNALVSMYGKLGRLGDARKVFDGMPARNAVSWNALVAAHGDVGDSRGA 210
Query: 164 ----------------------VRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPG 201
R GDM AA +F MP R+ VSWN +I Y+K G
Sbjct: 211 ERVSQEMPERSVSWWNAEITRHARVGDMEAAARVFREMPGRDAVSWNSLIGSYAKLGQCA 270
Query: 202 CSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALI 261
+LK+FREM SG + T+ SVL AC G+ VHGY + + + AL+
Sbjct: 271 RALKVFREMQDSGVEPTELTLVSVLGACTEIGELELGKGVHGYLSSKGVLADGYVGNALV 330
Query: 262 DLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSI 321
D+Y+KC +E+A++VF+SM+ R++ CWNAMI+G +HG E ++LF + +
Sbjct: 331 DMYAKCGSLELARQVFESMSTRDITCWNAMIVGLSVHGYSREALELFNVM--------RV 382
Query: 322 SPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAE 381
PD +TF+GV+ C + L+ EGR FR M + YKI P HY CM ++ EA
Sbjct: 383 EPDHVTFLGVLIVCSHSGLVDEGRVXFRSMTEDYKIVPGVKHYGCMVDMLCRCGKVAEAY 442
Query: 382 EILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNV 441
++L MP + S++W +L+ CR G + + + P D + ++
Sbjct: 443 QMLNYMP-----LKANSVLWKMVLAACRLHGHIHHANKAFHELHQLMPIDDGDVIMMSSI 497
Query: 442 YAVAGQWEDVARVR 455
YA +W+DV +R
Sbjct: 498 YAEGKRWDDVEHLR 511
>gi|242076234|ref|XP_002448053.1| hypothetical protein SORBIDRAFT_06g020256 [Sorghum bicolor]
gi|241939236|gb|EES12381.1| hypothetical protein SORBIDRAFT_06g020256 [Sorghum bicolor]
Length = 693
Score = 238 bits (606), Expect = 8e-60, Method: Compositional matrix adjust.
Identities = 150/472 (31%), Positives = 230/472 (48%), Gaps = 42/472 (8%)
Query: 7 IQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSNSC 66
IQA+ + GL + F +L+ A L+F + G NA+I AY +
Sbjct: 141 IQAYAVKRGLMADR-FVLSSLIHMYASCRDVAAAQLLFDAVEENGVVMWNAIITAYMKNG 199
Query: 67 VPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMN 126
+ V + M++ G + T VS+ +C + G + G + G+ +M
Sbjct: 200 NWMEVVEMFKGMLEVGVAFDEITLVSVVTACGRIGDAKLGKWVAEYVDEKGLVRNRNLMT 259
Query: 127 SLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVS 186
+LI+MY + G++ A LFD M R+VV+
Sbjct: 260 ALIDMYA-------------------------------KCGELGKARRLFDGMQSRDVVA 288
Query: 187 WNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTV 246
W+ MISGY+++ +L LF EM + ND TM SVL+AC G+ VH Y
Sbjct: 289 WSAMISGYTQADQCREALALFSEMQLAEVEPNDVTMVSVLSACAVLGALETGKWVHSYIR 348
Query: 247 RTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIK 306
R L IIL TAL+D Y+KC ++ A F+SM +N W A+I G +G+ E ++
Sbjct: 349 RKRLSLTIILGTALVDFYAKCGCIDDAVEAFESMPVKNSWTWTALIKGMATNGRGREALE 408
Query: 307 LFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWC 366
LF+++ SI P ++TFIGV+ AC + L+ EGR++F M Y IKP HY C
Sbjct: 409 LFSSMRK-----ASIEPTDVTFIGVLMACSHSCLVEEGRRHFDSMTQDYGIKPRAEHYGC 463
Query: 367 MANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVD 426
+ +L A L +EA + +R MP + + +++W +LLS C V + E K V
Sbjct: 464 VVDLLGRAGLIDEAYQFIRTMPIEPN-----AVIWRALLSSCAVHKNVEIGEEALKQIVS 518
Query: 427 MDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLKEVV 478
++P Y L N+YA GQW++ A +R+ MK R + + PGC L++L VV
Sbjct: 519 LNPSHSGDYILLSNIYASVGQWKNAAMIRKEMKDRGIEKTPGCSLIELDGVV 570
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 75/304 (24%), Positives = 141/304 (46%), Gaps = 26/304 (8%)
Query: 180 PERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDK-TMASVLTACGRSARFNEG 238
P + +N+++ +G+P +L LF EM+ D+ T+A L +C R + G
Sbjct: 79 PPLSTPCYNVLMRALLHAGHPEDALHLFVEMLDVASVCPDQHTVACALKSCSRMCTLDVG 138
Query: 239 RSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIH 298
R + Y V+ L + + ++LI +Y+ C+ V AQ +FD++ + +V WNA+I + +
Sbjct: 139 RGIQAYAVKRGLMADRFVLSSLIHMYASCRDVAAAQLLFDAVEENGVVMWNAIITAYMKN 198
Query: 299 GKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIK 358
G E +++F ++ VA DEIT + V+ AC R G K+ + +D +
Sbjct: 199 GNWMEVVEMFKGMLEVGVAF-----DEITLVSVVTACGRIGDAKLG-KWVAEYVDEKGLV 252
Query: 359 PNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLS------LCRFQG 412
N + ++YA +A + M S + + W +++S CR
Sbjct: 253 RNRNLMTALIDMYAKCGELGKARRLFDGM------QSRDVVAWSAMISGYTQADQCR--E 304
Query: 413 AVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGR--MPGCR 470
A+A+ + +++P D + +L+ AV G E V ++++R+ + G
Sbjct: 305 ALALFSEM--QLAEVEPNDVTMVS-VLSACAVLGALETGKWVHSYIRRKRLSLTIILGTA 361
Query: 471 LVDL 474
LVD
Sbjct: 362 LVDF 365
>gi|147791119|emb|CAN74703.1| hypothetical protein VITISV_029224 [Vitis vinifera]
Length = 677
Score = 238 bits (606), Expect = 8e-60, Method: Compositional matrix adjust.
Identities = 137/435 (31%), Positives = 230/435 (52%), Gaps = 19/435 (4%)
Query: 43 VFKCINNPGTFCVNAVIKAYSNSCVPDQGV-VFYLQMIKNGFMPNSYTFVSLFGSCAKTG 101
VF I + NA I + P VF + +G +PNS T VS+ +C+K
Sbjct: 248 VFDQILDKNVVSYNAFISGLLQNGAPHLVFDVFKDLLESSGEVPNSVTLVSILSACSKLL 307
Query: 102 CVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMS-PRDLISWNSIV 160
+ G HGL +K ++F+ V +L++MY G A +F+++S R+L++WNS++
Sbjct: 308 YIRFGRQIHGLVVKIEINFDTMVGTALVDMYSKCGCWHWAYGIFIELSGSRNLVTWNSMI 367
Query: 161 SGHVRSGDMSAAHELFDIMP----ERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFR 216
+G + +G A ELF+ + E + +WN MISG+S+ G + K F +M +G
Sbjct: 368 AGMMLNGQSDIAVELFEQLEPEGLEPDSATWNTMISGFSQQGQVVEAFKFFHKMQSAGVI 427
Query: 217 GNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRV 276
+ K++ S+L AC + G+ +HG+T+RT++ + + TALID+Y KC +A+RV
Sbjct: 428 ASLKSITSLLRACSALSALQSGKEIHGHTIRTNIDTDEFISTALIDMYMKCGHSYLARRV 487
Query: 277 F--DSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICA 334
F + + WNAMI G+ +GK + ++F + V P+ T + ++
Sbjct: 488 FCQFQIKPDDPAFWNAMISGYGRNGKYQSAFEIFNQMQEEKV-----QPNSATLVSILSV 542
Query: 335 CVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNM 394
C + G + F+ M Y + P H+ CM +L + +EA+E++ +MPE + +
Sbjct: 543 CSHTGEIDRGWQLFKMMNRDYGLNPTSEHFGCMVDLLGRSGRLKEAQELIHEMPEASVS- 601
Query: 395 SFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARV 454
++ SLL CR A+ E +AK +++PQD + + L N+YAV G+W DV RV
Sbjct: 602 -----VFASLLGACRHHSDSALGEEMAKKLSELEPQDPTPFVILSNIYAVQGRWGDVERV 656
Query: 455 RELMKKRRMGRMPGC 469
RE+M R + + PGC
Sbjct: 657 REMMNDRGLKKPPGC 671
Score = 122 bits (307), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 85/315 (26%), Positives = 155/315 (49%), Gaps = 41/315 (13%)
Query: 39 YTVLVFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCA 98
Y + VF+ + + +N I +S + + + + Q+ F PNS T S+ +CA
Sbjct: 146 YALKVFEEMPHRNLPSLNVTISGFSRNGYFREALGAFKQVGLGNFRPNSVTIASVLPACA 205
Query: 99 KTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNS 158
VE G H LA+K GV+ ++ V +++ MY G + A+ +F Q+ ++++S+N+
Sbjct: 206 S---VELDGQVHCLAIKLGVESDIYVATAVVTMYSNCGELVLAKKVFDQILDKNVVSYNA 262
Query: 159 IVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMK-SGFRG 217
+SG +++G A H +FD+ F+++++ SG
Sbjct: 263 FISGLLQNG---APHLVFDV----------------------------FKDLLESSGEVP 291
Query: 218 NDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVF 277
N T+ S+L+AC + GR +HG V+ + + ++ TAL+D+YSKC A +F
Sbjct: 292 NSVTLVSILSACSKLLYIRFGRQIHGLVVKIEINFDTMVGTALVDMYSKCGCWHWAYGIF 351
Query: 278 DSMA-DRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACV 336
++ RNLV WN+MI G ++G+ + ++LF L + PD T+ +I
Sbjct: 352 IELSGSRNLVTWNSMIAGMMLNGQSDIAVELFEQL-----EPEGLEPDSATWNTMISGFS 406
Query: 337 RAELLTEGRKYFRQM 351
+ + E K+F +M
Sbjct: 407 QQGQVVEAFKFFHKM 421
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 74/292 (25%), Positives = 140/292 (47%), Gaps = 41/292 (14%)
Query: 70 QGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLI 129
+ + Y ++ + + + +TF L + AK +G + H +K G ++ +L
Sbjct: 76 EALSLYSKLHSSSVLEHKFTFPFLLKASAKLNSPLQGQILHTQLIKTGFHLDIYAATALA 135
Query: 130 NMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNI 189
+MY ++ +S A ++F+ MP RN+ S N+
Sbjct: 136 DMY-------------------------------MKLHLLSYALKVFEEMPHRNLPSLNV 164
Query: 190 MISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTS 249
ISG+S++G +L F+++ FR N T+ASVL AC A VH ++
Sbjct: 165 TISGFSRNGYFREALGAFKQVGLGNFRPNSVTIASVLPAC---ASVELDGQVHCLAIKLG 221
Query: 250 LKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFT 309
++ +I + TA++ +YS C ++ +A++VFD + D+N+V +NA I G +G P +F
Sbjct: 222 VESDIYVATAVVTMYSNCGELVLAKKVFDQILDKNVVSYNAFISGLLQNGAPHLVFDVFK 281
Query: 310 ALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNF 361
L+ + G + P+ +T + ++ AC + + GR+ ++ KI+ NF
Sbjct: 282 DLLESS---GEV-PNSVTLVSILSACSKLLYIRFGRQIHGLVV---KIEINF 326
>gi|297822703|ref|XP_002879234.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297325073|gb|EFH55493.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 740
Score = 238 bits (606), Expect = 8e-60, Method: Compositional matrix adjust.
Identities = 123/451 (27%), Positives = 232/451 (51%), Gaps = 11/451 (2%)
Query: 35 GSPDYTVLVFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLF 94
G D VF I N++I + PD+ + + +M + T V +
Sbjct: 182 GDLDSACKVFTTIKEKDVVSWNSMINGFVQKGSPDKALELFKKMESEDVKASHVTMVGVL 241
Query: 95 GSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLI 154
+CAK +E G +N V+ L + N++++MY G+++ A+ +F M +D +
Sbjct: 242 SACAKIRDLEFGRRVCSYIEENRVNVNLTLANAMLDMYTKCGSIEDAKRLFDAMEEKDNV 301
Query: 155 SWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREM-MKS 213
+W +++ G+ S D AA E+ + MP++++V+WN +IS Y ++G P +L +F E+ ++
Sbjct: 302 TWTTMLDGYAISEDYEAAREVLNAMPKKDIVAWNALISAYEQNGKPNEALLVFHELQLQK 361
Query: 214 GFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVA 273
+ N T+ S L+AC + GR +H Y + +K N + +ALI +YSKC +E A
Sbjct: 362 NIKLNQITLVSTLSACAQVGALELGRWIHSYIKKNGIKMNFYVTSALIHMYSKCGDLEKA 421
Query: 274 QRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVIC 333
+ VF+S+ R++ W+AMI G +HG E + +F + V P+ +TF V C
Sbjct: 422 REVFNSVEKRDVFVWSAMIGGLAMHGCGSEAVDMFYKMQEANV-----KPNGVTFTNVFC 476
Query: 334 ACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDN 393
AC L+ E F +M Y I P HY C+ ++ + E+A + + MP
Sbjct: 477 ACSHTGLVDEAESLFYKMESSYGIVPEDKHYACIVDVLGRSGYLEKAVKFIEAMP----- 531
Query: 394 MSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVAR 453
+ + +W +LL C+ +++ E ++++P++ + L N+YA +G+W++V+
Sbjct: 532 IPPSTSVWGALLGACKIHANLSLAEMACTRLLELEPRNDGAHVLLSNIYAKSGKWDNVSE 591
Query: 454 VRELMKKRRMGRMPGCRLVDLKEVVEKLKVG 484
+R+ M+ + + PGC +++ ++ + G
Sbjct: 592 LRKHMRVTGLKKEPGCSSIEIDGMIHEFLSG 622
Score = 162 bits (411), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 114/415 (27%), Positives = 196/415 (47%), Gaps = 64/415 (15%)
Query: 1 MKQLLQIQAHLITSGLFFNNSFWTINLLKHSA--DFGSPDYTVLVFKCINNPGTFCVNAV 58
++QL Q AH+I +G+F ++ + L +A F S +Y VF I P +F N +
Sbjct: 44 LRQLKQTHAHMIRTGMF-SDPYSASKLFAIAALSSFASLEYARKVFDEIPQPNSFTWNTL 102
Query: 59 IKAYSNSCVPDQGVVFYLQMI--KNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKN 116
I+AY++ P + +L M+ ++ PN YTF L + A+ + G HG+A+K+
Sbjct: 103 IRAYASGPDPVCSIWAFLDMVSSESQCYPNKYTFPFLIKAAAEVSSLSLGQSLHGMAIKS 162
Query: 117 GVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELF 176
V ++ V NSLI+ Y C GD+ +A ++F
Sbjct: 163 AVGSDVFVANSLIHCY-----FSC--------------------------GDLDSACKVF 191
Query: 177 DIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFN 236
+ E++VVSWN MI+G+ + G+P +L+LF++M + + TM VL+AC +
Sbjct: 192 TTIKEKDVVSWNSMINGFVQKGSPDKALELFKKMESEDVKASHVTMVGVLSACAKIRDLE 251
Query: 237 EGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHC 296
GR V Y + N+ L A++D+Y+KC +E A+R+FD+M +++ V W M+ G+
Sbjct: 252 FGRRVCSYIEENRVNVNLTLANAMLDMYTKCGSIEDAKRLFDAMEEKDNVTWTTMLDGYA 311
Query: 297 I-----------HGKPEEGIKLFTALVNGTVAGG----------------SISPDEITFI 329
I + P++ I + AL++ G +I ++IT +
Sbjct: 312 ISEDYEAAREVLNAMPKKDIVAWNALISAYEQNGKPNEALLVFHELQLQKNIKLNQITLV 371
Query: 330 GVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEIL 384
+ AC + L GR + I IK NF + ++Y+ E+A E+
Sbjct: 372 STLSACAQVGALELGR-WIHSYIKKNGIKMNFYVTSALIHMYSKCGDLEKAREVF 425
Score = 103 bits (256), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 58/236 (24%), Positives = 122/236 (51%), Gaps = 9/236 (3%)
Query: 167 GDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFR--GNDKTMAS 224
+ A ++FD +P+ N +WN +I Y+ +P CS+ F +M+ S + N T
Sbjct: 79 ASLEYARKVFDEIPQPNSFTWNTLIRAYASGPDPVCSIWAFLDMVSSESQCYPNKYTFPF 138
Query: 225 VLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRN 284
++ A + + G+S+HG +++++ ++ + +LI Y C ++ A +VF ++ +++
Sbjct: 139 LIKAAAEVSSLSLGQSLHGMAIKSAVGSDVFVANSLIHCYFSCGDLDSACKVFTTIKEKD 198
Query: 285 LVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEG 344
+V WN+MI G G P++ ++LF + + V +T +GV+ AC + L G
Sbjct: 199 VVSWNSMINGFVQKGSPDKALELFKKMESEDVKAS-----HVTMVGVLSACAKIRDLEFG 253
Query: 345 RKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIM 400
R+ I+ ++ N M ++Y E+A+ + M E+ DN+++ +++
Sbjct: 254 RRVC-SYIEENRVNVNLTLANAMLDMYTKCGSIEDAKRLFDAM-EEKDNVTWTTML 307
>gi|224122590|ref|XP_002330519.1| predicted protein [Populus trichocarpa]
gi|222872453|gb|EEF09584.1| predicted protein [Populus trichocarpa]
Length = 726
Score = 238 bits (606), Expect = 8e-60, Method: Compositional matrix adjust.
Identities = 132/432 (30%), Positives = 218/432 (50%), Gaps = 41/432 (9%)
Query: 43 VFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGC 102
VF+ + NP NA++ + +S +G + QM+ GF PN +TF+S+ SC+
Sbjct: 209 VFEAMTNPDLVSWNALLSGFYDSQTCGRGPRIFYQMLLEGFKPNMFTFISVLRSCSSLLD 268
Query: 103 VERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSG 162
E G H +KN D + V +L++MY
Sbjct: 269 PEFGKQVHAHIIKNSSDDDDFVGTALVDMYA----------------------------- 299
Query: 163 HVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTM 222
++ + A FD + R++ SW ++ISGY+++ ++K FR+M + G + N+ T+
Sbjct: 300 --KARCLEDAGVAFDRLVNRDIFSWTVIISGYAQTDQAEKAVKYFRQMQREGIKPNEYTL 357
Query: 223 ASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMAD 282
AS L+ C A GR +H V+ +I + +AL+DLY KC +E A+ +F +
Sbjct: 358 ASCLSGCSHMATLENGRQLHAVAVKAGHFGDIFVGSALVDLYGKCGCMEHAEAIFKGLIS 417
Query: 283 RNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLT 342
R++V WN +I G+ HG+ E+ ++ F +++ I PDE TFIGV+ AC L+
Sbjct: 418 RDIVSWNTIISGYSQHGQGEKALEAFRMMLS-----EGIMPDEATFIGVLSACSFMGLVE 472
Query: 343 EGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWV 402
EG+K F M Y I P+ HY CM ++ A E + + +M N++ S++W
Sbjct: 473 EGKKRFDSMSKIYGINPSIEHYACMVDILGRAGKFNEVKIFIEEM-----NLTPYSLIWE 527
Query: 403 SLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRR 462
++L C+ G V E+ AK +M+P S Y L N++A G+W+DV +R LM R
Sbjct: 528 TVLGACKLHGNVDFGEKAAKKLFEMEPMMDSSYILLSNIFASKGRWDDVRNIRALMTSRG 587
Query: 463 MGRMPGCRLVDL 474
+ + PGC V++
Sbjct: 588 IKKEPGCSWVEV 599
Score = 109 bits (273), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 89/387 (22%), Positives = 155/387 (40%), Gaps = 43/387 (11%)
Query: 20 NSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMI 79
+ F +L+ + G+ + VF I NP +A+I + + M
Sbjct: 85 DEFLGCSLVDMYSKCGTVYDALKVFTKIRNPDVVAWSAMITGLDQQGHGQEAAELFHLMR 144
Query: 80 KNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMD 139
+ G PN +T SL + G + G HG K G + + V N LI MY ++
Sbjct: 145 RKGARPNQFTLSSLVSTATNMGDLRYGQSIHGCICKYGFESDNLVSNPLIMMYMKSRCVE 204
Query: 140 CARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGN 199
+F M+ DL+SWN+ ++SG+ S
Sbjct: 205 DGNKVFEAMTNPDLVSWNA-------------------------------LLSGFYDSQT 233
Query: 200 PGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTA 259
G ++F +M+ GF+ N T SVL +C G+ VH + ++ S + + TA
Sbjct: 234 CGRGPRIFYQMLLEGFKPNMFTFISVLRSCSSLLDPEFGKQVHAHIIKNSSDDDDFVGTA 293
Query: 260 LIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGG 319
L+D+Y+K + +E A FD + +R++ W +I G+ + E+ +K F +
Sbjct: 294 LVDMYAKARCLEDAGVAFDRLVNRDIFSWTVIISGYAQTDQAEKAVKYFRQMQR-----E 348
Query: 320 SISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEE 379
I P+E T + C L GR+ + F + +LY E
Sbjct: 349 GIKPNEYTLASCLSGCSHMATLENGRQLHAVAVKAGHFGDIFVGS-ALVDLYGKCGCMEH 407
Query: 380 AEEILRKMPEDNDNMSFESIMWVSLLS 406
AE I + + +S + + W +++S
Sbjct: 408 AEAIFKGL------ISRDIVSWNTIIS 428
Score = 94.7 bits (234), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 49/140 (35%), Positives = 81/140 (57%)
Query: 169 MSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTA 228
M A LF MPE+N VSWN +++GY++ G+ LKLF +M + + + T+++VL
Sbjct: 1 MELAERLFFGMPEKNGVSWNALLNGYAQLGDGKKVLKLFCKMKECETKFSKFTLSTVLKG 60
Query: 229 CGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCW 288
C + EG+ +H +R+ + + L +L+D+YSKC V A +VF + + ++V W
Sbjct: 61 CANTGSLREGKVLHALALRSGCEIDEFLGCSLVDMYSKCGTVYDALKVFTKIRNPDVVAW 120
Query: 289 NAMILGHCIHGKPEEGIKLF 308
+AMI G G +E +LF
Sbjct: 121 SAMITGLDQQGHGQEAAELF 140
Score = 92.8 bits (229), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 73/326 (22%), Positives = 144/326 (44%), Gaps = 39/326 (11%)
Query: 56 NAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALK 115
NA++ Y+ + + + +M + + +T ++ CA TG + G + H LAL+
Sbjct: 20 NALLNGYAQLGDGKKVLKLFCKMKECETKFSKFTLSTVLKGCANTGSLREGKVLHALALR 79
Query: 116 NGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHEL 175
+G + + + SL++MY G + A +F ++ D+++W+++++G + G A EL
Sbjct: 80 SGCEIDEFLGCSLVDMYSKCGTVYDALKVFTKIRNPDVVAWSAMITGLDQQGHGQEAAEL 139
Query: 176 FDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARF 235
F +M + G R N T++S+++
Sbjct: 140 FHLMRRK-------------------------------GARPNQFTLSSLVSTATNMGDL 168
Query: 236 NEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGH 295
G+S+HG + + + ++ LI +Y K + VE +VF++M + +LV WNA++ G
Sbjct: 169 RYGQSIHGCICKYGFESDNLVSNPLIMMYMKSRCVEDGNKVFEAMTNPDLVSWNALLSGF 228
Query: 296 CIHGKPEEGIKLF-TALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDF 354
G ++F L+ G P+ TFI V+ +C G++ +I
Sbjct: 229 YDSQTCGRGPRIFYQMLLEG------FKPNMFTFISVLRSCSSLLDPEFGKQVHAHIIKN 282
Query: 355 YKIKPNFAHYWCMANLYAGAELTEEA 380
+F + ++YA A E+A
Sbjct: 283 SSDDDDFVGT-ALVDMYAKARCLEDA 307
>gi|326511827|dbj|BAJ92058.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 581
Score = 237 bits (605), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 141/485 (29%), Positives = 238/485 (49%), Gaps = 46/485 (9%)
Query: 8 QAHLITSGLFFNNSFWTINLLKH---SADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSN 64
Q H ++ L ++ + +N L + S + S +VL T N +I Y +
Sbjct: 114 QLHALSVKLGLSSDTFVLNTLINMYSSCSYPSTARSVLDSAPKGASDTVSWNTIIAGYIH 173
Query: 65 SCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPV 124
+ +P++ + + QM K M + T ++ +CA+T ++ G +CH L + NG + +
Sbjct: 174 AGLPNKALQAFSQMAKGQVMLDDVTLLNALVACARTCMMKVGKLCHALLVTNGFEINCYM 233
Query: 125 MNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNV 184
+SLI+MY + G + A +FD MP+RN
Sbjct: 234 GSSLISMYA-------------------------------KCGQVEDARRIFDGMPDRNA 262
Query: 185 VSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGY 244
V W MISGY++ G ++KLFR+M +G + +D T+++V+++CG+ + GR VH Y
Sbjct: 263 VCWTSMISGYTQLGQSKEAIKLFRDMQIAGVKVDDATISTVVSSCGQMGALDLGRYVHAY 322
Query: 245 TVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEG 304
L +I + +LID+YSKC ++ A +F M R+ W +I+G +G E
Sbjct: 323 CDIHGLGKDISVKNSLIDMYSKCGDIKKAYDIFCGMVKRDNFSWTVIIMGFAANGLSGEA 382
Query: 305 IKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHY 364
+ LF + G + P+EITF+GV+ +C L+ +G ++F +M Y I P HY
Sbjct: 383 LDLFAQMEE----EGGVMPNEITFLGVLTSCSHGGLVEQGYRHFHRMSSIYGIAPRIEHY 438
Query: 365 WCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSF 424
CM +L A+L EAE+ +++MP ++ +++MW SLL CR G V + E +A+
Sbjct: 439 GCMVDLLGRAKLLAEAEQFIKEMP-----IAPDAVMWRSLLFACRTCGEVGLAEYVAERI 493
Query: 425 VDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLKEVVEKLKVG 484
++P L VYA +W D +VR + R + PGC +++ V + G
Sbjct: 494 QVLEPNKCGGDVLLSTVYATTSRWVDANKVRTGIYSGRKTKQPGCSFIEVDGCVHEFFAG 553
Query: 485 ---HF 486
HF
Sbjct: 554 DESHF 558
Score = 132 bits (331), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 94/350 (26%), Positives = 174/350 (49%), Gaps = 43/350 (12%)
Query: 55 VNAVIKAYSNSCVPDQGVVFYLQMIKNGFMP-NSYTFVSLFGSCAKTGCVERGGMCHGLA 113
+++V+++ S+ VP + F + ++G+MP ++Y+ + + A+ V G H L+
Sbjct: 60 LHSVLRSLSSGPVPSLSLSFLSLLRRSGYMPIDNYSLSAALSTAARMPSVVVGAQLHALS 119
Query: 114 LKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPR---DLISWNSIVSGHVRSGDMS 170
+K G+ + V+N+LINMY AR++ + +P+ D +SWN+I++G++ +G
Sbjct: 120 VKLGLSSDTFVLNTLINMYSSCSYPSTARSV-LDSAPKGASDTVSWNTIIAGYIHAG--- 175
Query: 171 AAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACG 230
+P + +L+ F +M K +D T+ + L AC
Sbjct: 176 --------LPNK--------------------ALQAFSQMAKGQVMLDDVTLLNALVACA 207
Query: 231 RSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNA 290
R+ G+ H V + N + ++LI +Y+KC +VE A+R+FD M DRN VCW +
Sbjct: 208 RTCMMKVGKLCHALLVTNGFEINCYMGSSLISMYAKCGQVEDARRIFDGMPDRNAVCWTS 267
Query: 291 MILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQ 350
MI G+ G+ +E IKLF + +AG + D+ T V+ +C + L GR Y
Sbjct: 268 MISGYTQLGQSKEAIKLFRDM---QIAG--VKVDDATISTVVSSCGQMGALDLGR-YVHA 321
Query: 351 MIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIM 400
D + + + + + ++Y+ ++A +I M + DN S+ I+
Sbjct: 322 YCDIHGLGKDISVKNSLIDMYSKCGDIKKAYDIFCGMVK-RDNFSWTVII 370
>gi|242079801|ref|XP_002444669.1| hypothetical protein SORBIDRAFT_07g025740 [Sorghum bicolor]
gi|241941019|gb|EES14164.1| hypothetical protein SORBIDRAFT_07g025740 [Sorghum bicolor]
Length = 581
Score = 237 bits (605), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 133/429 (31%), Positives = 221/429 (51%), Gaps = 40/429 (9%)
Query: 56 NAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALK 115
N +I Y +P++ + + QM+K + T ++ + AK G V+ G +CH L +
Sbjct: 165 NTIISGYLRGGMPNKALQAFGQMVKEQVTLDDVTLLNALVASAKAGKVKVGRLCHSLVVV 224
Query: 116 NGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHEL 175
NG + +SLI+MY G ++ AR ++
Sbjct: 225 NGAGINCYMGSSLISMYAKCGLVEDAR-------------------------------KV 253
Query: 176 FDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARF 235
F M ERNVV W MISGY++ G ++ LFR+M +G + +D T+A+V+++C +
Sbjct: 254 FHGMHERNVVCWTSMISGYTQLGKFKEAVNLFRDMQITGMKVDDGTIATVVSSCAQMGAL 313
Query: 236 NEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGH 295
+ GR VH Y L + + +LID+YSKC + A +F + R++ W AMI+G
Sbjct: 314 DLGRYVHAYCDVHGLGKELSVKNSLIDMYSKCGDINKAHEIFCGLTKRDVFSWTAMIMGF 373
Query: 296 CIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFY 355
++G E + LF A + G G + P+E+TF+GV+ +C L+ +G YF++M Y
Sbjct: 374 TVNGLCSEALDLF-AQMEGE---GKVMPNEVTFLGVLTSCSHGGLVEQGFHYFQRMSMVY 429
Query: 356 KIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVA 415
K+ P HY CM +L A+L EAE+ ++ MP ++ + ++W SLL CR G V
Sbjct: 430 KLAPRIEHYGCMVDLLGRAKLLTEAEQFIKNMP-----IAPDVVVWRSLLFACRACGEVG 484
Query: 416 MVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLK 475
+ E +A+ ++++P+ + + L NVYA +W DV +R M RM + PGC +++
Sbjct: 485 LAEFVAERILELEPKKCAGHVLLSNVYATTSRWVDVNELRTSMDNSRMSKQPGCSFIEVD 544
Query: 476 EVVEKLKVG 484
V + G
Sbjct: 545 GCVHEFFAG 553
Score = 112 bits (280), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 81/300 (27%), Positives = 138/300 (46%), Gaps = 39/300 (13%)
Query: 86 NSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMF 145
++Y+ F + ++ V G H L++K G+ + V+NSLINMY C+
Sbjct: 92 DNYSLNIAFSATSRLPSVSVGAQLHSLSVKLGLVSDTFVLNSLINMYS-----SCSYP-- 144
Query: 146 VQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPER--NVVSWNIMISGYSKSGNPGCS 203
+ A ++ D P+ + VSWN +ISGY + G P +
Sbjct: 145 ------------------------ATARQVLDSAPQGACDTVSWNTIISGYLRGGMPNKA 180
Query: 204 LKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDL 263
L+ F +M+K +D T+ + L A ++ + GR H V N + ++LI +
Sbjct: 181 LQAFGQMVKEQVTLDDVTLLNALVASAKAGKVKVGRLCHSLVVVNGAGINCYMGSSLISM 240
Query: 264 YSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISP 323
Y+KC VE A++VF M +RN+VCW +MI G+ GK +E + LF + + G +
Sbjct: 241 YAKCGLVEDARKVFHGMHERNVVCWTSMISGYTQLGKFKEAVNLFRDM---QITGMKV-- 295
Query: 324 DEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEI 383
D+ T V+ +C + L GR Y D + + + + ++Y+ +A EI
Sbjct: 296 DDGTIATVVSSCAQMGALDLGR-YVHAYCDVHGLGKELSVKNSLIDMYSKCGDINKAHEI 354
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 61/278 (21%), Positives = 111/278 (39%), Gaps = 34/278 (12%)
Query: 20 NSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMI 79
N + +L+ A G + VF ++ C ++I Y+ + V + M
Sbjct: 230 NCYMGSSLISMYAKCGLVEDARKVFHGMHERNVVCWTSMISGYTQLGKFKEAVNLFRDMQ 289
Query: 80 KNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMD 139
G + T ++ SCA+ G ++ G H +G+ EL V NSLI+MY G ++
Sbjct: 290 ITGMKVDDGTIATVVSSCAQMGALDLGRYVHAYCDVHGLGKELSVKNSLIDMYSKCGDIN 349
Query: 140 CARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGN 199
A +F ++ RD+ SW + MI G++ +G
Sbjct: 350 KAHEIFCGLTKRDVFSWTA-------------------------------MIMGFTVNGL 378
Query: 200 PGCSLKLFREMMKSG-FRGNDKTMASVLTACGRSARFNEG-RSVHGYTVRTSLKPNIILD 257
+L LF +M G N+ T VLT+C +G ++ L P I
Sbjct: 379 CSEALDLFAQMEGEGKVMPNEVTFLGVLTSCSHGGLVEQGFHYFQRMSMVYKLAPRIEHY 438
Query: 258 TALIDLYSKCQKVEVAQRVFDSMA-DRNLVCWNAMILG 294
++DL + + + A++ +M ++V W +++
Sbjct: 439 GCMVDLLGRAKLLTEAEQFIKNMPIAPDVVVWRSLLFA 476
>gi|356577724|ref|XP_003556973.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g56310-like [Glycine max]
Length = 549
Score = 237 bits (605), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 143/488 (29%), Positives = 239/488 (48%), Gaps = 16/488 (3%)
Query: 1 MKQLLQIQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIK 60
+ L Q Q ++T GL + + SA G Y VF + P F N VI
Sbjct: 43 LSHLQQTQGFMLTRGLD-QDDILLARFIYTSASLGLSSYAYSVFISNHRPSIFFYNNVIW 101
Query: 61 AYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDF 120
A S+S P + + + + G P+SY+F + + V G H A+ +G+D
Sbjct: 102 ALSSSN-PTRAISLFNAIRLLGMPPDSYSFPFVLKAVVCLSAVHVGKQIHCQAIVSGLDS 160
Query: 121 ELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMP 180
V+ SL+ MY + AR +F + + WN++++G+ + G+MS A LF+ MP
Sbjct: 161 HPSVVTSLVQMYSSCAHLSSARKLFDGATFKHAPLWNAMLAGYAKVGNMSNARNLFECMP 220
Query: 181 E--RNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEG 238
E R+VVSW +ISGY+++ +P ++ LFR M+ + ++ + +VL+AC G
Sbjct: 221 EKDRDVVSWTTLISGYTQTHSPNEAITLFRIMLLQNVQPDEIAILAVLSACADLGALQLG 280
Query: 239 RSVHGYTVR--TSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHC 296
+H Y + L+ + L +LID+Y+K + A+++F +M + ++ W +I G
Sbjct: 281 EWIHNYIEKHNNKLRKTVPLCNSLIDMYAKSGDISKARQLFQNMKHKTIITWTTVISGLA 340
Query: 297 IHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYK 356
+HG +E + +F+ + V P+E+T I V+ AC L+ GR F M Y
Sbjct: 341 LHGFGKEALDVFSCMEKARV-----KPNEVTLIAVLSACSHVGLVELGRNIFTSMRSKYG 395
Query: 357 IKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAM 416
I+P HY CM +L A +EA E++R MP + + + +W SLLS G A+
Sbjct: 396 IEPKIEHYGCMIDLLGRAGYLQEAMELVRVMPSEAN-----AAVWGSLLSASNRYGDAAL 450
Query: 417 VERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLKE 476
+ ++P + Y L N YA G W++ A VR++M+ ++PG V+L
Sbjct: 451 AAEALRHLSVLEPHNCGNYSLLSNTYAALGWWKEAAMVRKVMRDTCAEKVPGVSFVELNN 510
Query: 477 VVEKLKVG 484
V + G
Sbjct: 511 RVYEFIAG 518
>gi|347954492|gb|AEP33746.1| chloroplast biogenesis 19, partial [Barbarea verna]
Length = 494
Score = 237 bits (605), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 136/407 (33%), Positives = 211/407 (51%), Gaps = 14/407 (3%)
Query: 82 GFMPNSYTFVSLFGSCA--KTGCVERGGMCHGLALKNGVD-FELPVMNSLINMYGCFGAM 138
G PN TF++L C +G G + HG A K G+D + V +++ MY G
Sbjct: 60 GVEPNHITFIALLSGCGDVSSGSEALGDLLHGYACKLGLDRTHVMVGTAILGMYSKRGRF 119
Query: 139 DCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSG 198
AR +F M ++ ++WN+++ G++RSG ++ A +LFD MPER+++SW MI+G+ K G
Sbjct: 120 GKARLVFDFMEDKNSVTWNTMIDGYMRSGQVNNAVKLFDEMPERDLISWTAMINGFVKKG 179
Query: 199 NPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDT 258
+L FREM SG + + + + L AC + G VH Y + K NI +
Sbjct: 180 FHEEALAWFREMQISGVKPDYVAIIAALAACTHLGALSFGLWVHRYVMNQDFKNNIRVSN 239
Query: 259 ALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAG 318
+LIDLY +C VE A+ VFD M R +V WN++I+G +G E + F +
Sbjct: 240 SLIDLYCRCGCVEFAREVFDKMEKRTVVSWNSVIVGFAANGNAHESLVYFRKMQE----- 294
Query: 319 GSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTE 378
PD +TF G + AC L+ EG +YF+ M ++I P HY C+ +LY+ A E
Sbjct: 295 EGFKPDAVTFTGALTACSHVGLVEEGLRYFQTMKRDHRISPRIEHYGCLVDLYSRAGRLE 354
Query: 379 EAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQG-AVAMVERLAKSFVDMDPQDFSRYQF 437
+A +++ MP M ++ SLL+ CR G + ERL K D++ + S Y
Sbjct: 355 DALNVVQSMP-----MKPNEVVIGSLLAACRNHGNNTVLAERLVKHLSDLNVKSHSNYVI 409
Query: 438 LLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLKEVVEKLKVG 484
L N+YA G WE +++R MK + + PG V++ + G
Sbjct: 410 LSNMYAADGIWEGASKMRRKMKGLGLKKQPGFSSVEIDDCTHVFMAG 456
Score = 79.0 bits (193), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 56/226 (24%), Positives = 93/226 (41%), Gaps = 32/226 (14%)
Query: 56 NAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALK 115
A+I + ++ + ++ +M +G P+ ++ +C G + G H +
Sbjct: 169 TAMINGFVKKGFHEEALAWFREMQISGVKPDYVAIIAALAACTHLGALSFGLWVHRYVMN 228
Query: 116 NGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHEL 175
+ V NSLI++Y G ++ AR +F +M R ++SWNS+
Sbjct: 229 QDFKNNIRVSNSLIDLYCRCGCVEFAREVFDKMEKRTVVSWNSV---------------- 272
Query: 176 FDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARF 235
I G++ +GN SL FR+M + GF+ + T LTAC
Sbjct: 273 ---------------IVGFAANGNAHESLVYFRKMQEEGFKPDAVTFTGALTACSHVGLV 317
Query: 236 NEG-RSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSM 280
EG R + P I L+DLYS+ ++E A V SM
Sbjct: 318 EEGLRYFQTMKRDHRISPRIEHYGCLVDLYSRAGRLEDALNVVQSM 363
Score = 40.8 bits (94), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 37/188 (19%), Positives = 82/188 (43%), Gaps = 6/188 (3%)
Query: 35 GSPDYTVLVFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLF 94
G ++ VF + N+VI ++ + + +V++ +M + GF P++ TF
Sbjct: 249 GCVEFAREVFDKMEKRTVVSWNSVIVGFAANGNAHESLVYFRKMQEEGFKPDAVTFTGAL 308
Query: 95 GSCAKTGCVERG-GMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMF--VQMSPR 151
+C+ G VE G + + + + L+++Y G ++ A N+ + M P
Sbjct: 309 TACSHVGLVEEGLRYFQTMKRDHRISPRIEHYGCLVDLYSRAGRLEDALNVVQSMPMKPN 368
Query: 152 DLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVS---WNIMISGYSKSGNPGCSLKLFR 208
+++ + + + + A L + + NV S + I+ + Y+ G + K+ R
Sbjct: 369 EVVIGSLLAACRNHGNNTVLAERLVKHLSDLNVKSHSNYVILSNMYAADGIWEGASKMRR 428
Query: 209 EMMKSGFR 216
+M G +
Sbjct: 429 KMKGLGLK 436
>gi|296088715|emb|CBI38165.3| unnamed protein product [Vitis vinifera]
Length = 654
Score = 237 bits (605), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 135/424 (31%), Positives = 230/424 (54%), Gaps = 36/424 (8%)
Query: 56 NAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALK 115
N++I Y + + + +++M+ +G P+ T S+ +CA ++ G H +K
Sbjct: 217 NSLITCYEQNGPASEALEVFVRMMDSGLEPDEVTLASVVSACASLCALKEGLQIHARVVK 276
Query: 116 -NGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHE 174
N +L + N+L++MY ++ AR +F +MS R+++S S+VSG+ R+ + AA
Sbjct: 277 TNKFRDDLVLGNALVDMYAKCSKVNEARRVFDRMSIRNVVSETSMVSGYARAASVKAARF 336
Query: 175 LFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSAR 234
+F M +RNVVSWN +I+GY+++G +L+LFR + +
Sbjct: 337 MFSKMTQRNVVSWNALIAGYTQNGENEEALRLFRLLKRESIWPTH--------------- 381
Query: 235 FNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILG 294
YT LK +I + +LID+Y KC +E RVF+ M +R+ V WNA+I+G
Sbjct: 382 ---------YTFGNLLKSDIFVGNSLIDMYMKCGSIEDGSRVFEKMKERDCVSWNAIIVG 432
Query: 295 HCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDF 354
+ +G E +++F ++ V G PD +T IGV+CAC A L+ EGR YF M +
Sbjct: 433 YAQNGYGAEALQIFRKML---VCGE--KPDHVTMIGVLCACSHAGLVEEGRHYFFSM-EE 486
Query: 355 YKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAV 414
+ + P HY CM +L A EA+ ++ MP + D +++W SLL+ C+ G +
Sbjct: 487 HGLIPLKDHYTCMVDLLGRAGCLNEAKNLIEAMPVNPD-----AVVWGSLLAACKVHGNI 541
Query: 415 AMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDL 474
M + A+ +++DP + Y L N+YA G+W DV RVR+LM+++ + + PGC +++
Sbjct: 542 EMGKHAAEKLLEIDPWNSGPYVLLSNMYAELGRWGDVVRVRKLMRQQGVTKQPGCSWIEV 601
Query: 475 KEVV 478
+ V
Sbjct: 602 ESRV 605
Score = 179 bits (454), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 108/383 (28%), Positives = 186/383 (48%), Gaps = 14/383 (3%)
Query: 78 MIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGA 137
++++ ++PNS F L SC ++ + H L E+ + N LI++YG
Sbjct: 6 LVRDLYLPNSSPFAKLLDSCLRSRSARGTRLVHARILMTQFSMEIFIQNRLIDVYGKCDC 65
Query: 138 MDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKS 197
+D AR +F +M R+ +WNS++S +SG + A LF MPE + SWN M+SG+++
Sbjct: 66 LDDARKLFDRMPQRNTFTWNSLISVLTKSGFLDEAARLFGSMPEPDQCSWNSMVSGFAQH 125
Query: 198 GNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILD 257
SL+ F +M + F N+ + S L+AC N G VH ++ ++ +
Sbjct: 126 DRFEESLEYFVKMHREDFLLNEYSFGSALSACAGLMDLNMGTQVHALVSKSRYSTDVYMG 185
Query: 258 TALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVA 317
+ALID+YSKC V A+ VF M +RNLV WN++I + +G E +++F +++
Sbjct: 186 SALIDMYSKCGSVACAEEVFSGMIERNLVTWNSLITCYEQNGPASEALEVFVRMMD---- 241
Query: 318 GGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELT 377
+ PDE+T V+ AC L EG + +++ K + + + ++YA
Sbjct: 242 -SGLEPDEVTLASVVSACASLCALKEGLQIHARVVKTNKFRDDLVLGNALVDMYAKCSKV 300
Query: 378 EEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQF 437
EA + D MS ++ VS S+ A V+ F M ++ +
Sbjct: 301 NEARRVF-------DRMSIRNV--VSETSMVSGYARAASVKAARFMFSKMTQRNVVSWNA 351
Query: 438 LLNVYAVAGQWEDVARVRELMKK 460
L+ Y G+ E+ R+ L+K+
Sbjct: 352 LIAGYTQNGENEEALRLFRLLKR 374
Score = 129 bits (323), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 88/341 (25%), Positives = 154/341 (45%), Gaps = 68/341 (19%)
Query: 20 NSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMI 79
N+F +L+ G D +F + P N+++ ++ ++ + ++++M
Sbjct: 80 NTFTWNSLISVLTKSGFLDEAARLFGSMPEPDQCSWNSMVSGFAQHDRFEESLEYFVKMH 139
Query: 80 KNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMD 139
+ F+ N Y+F S +CA + G H L K+ ++ + ++LI+MY G++
Sbjct: 140 REDFLLNEYSFGSALSACAGLMDLNMGTQVHALVSKSRYSTDVYMGSALIDMYSKCGSVA 199
Query: 140 CARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGN 199
CA +F M R+L++WNS+ I+ Y ++G
Sbjct: 200 CAEEVFSGMIERNLVTWNSL-------------------------------ITCYEQNGP 228
Query: 200 PGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTS-LKPNIILDT 258
+L++F MM SG ++ T+ASV++AC EG +H V+T+ + +++L
Sbjct: 229 ASEALEVFVRMMDSGLEPDEVTLASVVSACASLCALKEGLQIHARVVKTNKFRDDLVLGN 288
Query: 259 ALIDLYSKCQKVEVAQRVFDSMA-------------------------------DRNLVC 287
AL+D+Y+KC KV A+RVFD M+ RN+V
Sbjct: 289 ALVDMYAKCSKVNEARRVFDRMSIRNVVSETSMVSGYARAASVKAARFMFSKMTQRNVVS 348
Query: 288 WNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITF 328
WNA+I G+ +G+ EE ++LF L SI P TF
Sbjct: 349 WNALIAGYTQNGENEEALRLFRLLKR-----ESIWPTHYTF 384
Score = 43.1 bits (100), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 47/214 (21%), Positives = 99/214 (46%), Gaps = 19/214 (8%)
Query: 10 HLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSNSCVPD 69
+L+ S +F NS + + S + GS VF+ + NA+I Y+ +
Sbjct: 386 NLLKSDIFVGNSLIDMYMKCGSIEDGSR-----VFEKMKERDCVSWNAIIVGYAQNGYGA 440
Query: 70 QGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNS-- 127
+ + + +M+ G P+ T + + +C+ G VE G ++G+ +P+ +
Sbjct: 441 EALQIFRKMLVCGEKPDHVTMIGVLCACSHAGLVEEGRHYFFSMEEHGL---IPLKDHYT 497
Query: 128 -LINMYGCFGAMDCARNMFVQMSPR-DLISWNSI-----VSGHVRSGDMSAAHELFDIMP 180
++++ G G ++ A+N+ M D + W S+ V G++ G AA +L +I P
Sbjct: 498 CMVDLLGRAGCLNEAKNLIEAMPVNPDAVVWGSLLAACKVHGNIEMGK-HAAEKLLEIDP 556
Query: 181 ERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSG 214
N + ++ + Y++ G G +++ + M + G
Sbjct: 557 -WNSGPYVLLSNMYAELGRWGDVVRVRKLMRQQG 589
>gi|224056897|ref|XP_002299078.1| predicted protein [Populus trichocarpa]
gi|222846336|gb|EEE83883.1| predicted protein [Populus trichocarpa]
Length = 488
Score = 237 bits (604), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 132/484 (27%), Positives = 247/484 (51%), Gaps = 31/484 (6%)
Query: 2 KQLLQIQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKA 61
+++ Q+ A + SGL + LL+ Y +F+ I +P F N +I+
Sbjct: 27 QEVKQLHAQFVVSGLLGYHPLCARRLLEAYVTMSQIYYAFSIFERIPSPDVFVYNTMIR- 85
Query: 62 YSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFE 121
G +++T+ + +C+ G H +K G+ +
Sbjct: 86 --------------------GLTMDNFTYTFVLKACSHLKAPFEGKQVHCQIIKAGIVPD 125
Query: 122 LPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPE 181
+ +SLI+MY G++D A + + S + ++ N+++SG++ G + A ++FD M
Sbjct: 126 THIHSSLIHMYTNSGSIDDAERVLGEFSEENTLAKNAMISGYLTEGRVDKARKMFDDMAA 185
Query: 182 RNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSV 241
++ SW+ +I+GY+K+G +L LF++MM S N+ + S+L+ACG+ ++GR +
Sbjct: 186 KDAASWSALITGYTKNGMHTEALALFQDMMVSHILPNEAALVSLLSACGQLGTLHQGRWI 245
Query: 242 HGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKP 301
H Y +T + + L TALID+Y+K +E +F MA R++V W MI IHG
Sbjct: 246 HAYIDKTRVLMSTKLTTALIDMYAKSGSIECGYGLFQKMARRDVVTWGVMISAFAIHGHA 305
Query: 302 EEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNF 361
+ +LF ++ I P+++ F+ ++ AC A + EGR+YF QM + IKP+
Sbjct: 306 SKCFQLFDEML-----ADGIRPNKVIFVAILSACSHAGCVEEGRQYFSQMEHGFGIKPSI 360
Query: 362 AHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLA 421
HY CM +L A L +AE+++ MP+ + SI+W SLL CR +
Sbjct: 361 EHYGCMVDLLGRAGLLADAEQLILSMPKQPN-----SIIWGSLLGACRTHNDLKRGTWAF 415
Query: 422 KSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLKEVVEKL 481
++ ++++P R++ ++A AG+ E+ A++R+++ ++ M G ++++ V +
Sbjct: 416 ENLMELEPTSGDRHKLAGLMFANAGEKEEAAKIRKMIHEKEMVTTCGSSFIEVEGAVHEF 475
Query: 482 KVGH 485
VG+
Sbjct: 476 TVGY 479
>gi|326492712|dbj|BAJ90212.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326506700|dbj|BAJ91391.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 520
Score = 237 bits (604), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 144/484 (29%), Positives = 233/484 (48%), Gaps = 13/484 (2%)
Query: 1 MKQLLQIQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIK 60
M L Q+ A L+ SGL + + + + + Y + + P +F N I+
Sbjct: 45 MAHLRQLHAALVKSGLSKDPIAASRAVAFCAGEGRDAAYAARIVRYHPRPNSFMWNTAIR 104
Query: 61 AYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDF 120
A S+ PD V ++ M+++ P TF SLF + A+ G + G HG+ LK G+
Sbjct: 105 ALSDGPGPDAAVALFVDMLRSPTPPERRTFPSLFAAYARLGRADDGAALHGMVLKLGLAG 164
Query: 121 ELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMP 180
+ N+ I MY G D A +F Q D+++ NS + R+G + A +FD MP
Sbjct: 165 DAYTRNTTIAMYASSGRADEALALFGQCQVFDVVACNSAIVALSRAGRVDEARAVFDGMP 224
Query: 181 ERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRS 240
R V +W+ M+S YS++ ++ LF M G N + SVL C +G
Sbjct: 225 SRTVATWSAMVSAYSRAARFHDAVDLFSAMQVDGVEPNANVLVSVLGCCASLGALEQGAW 284
Query: 241 VHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLV---CWNAMILGHCI 297
VH Y + + N ++ AL+D+Y KC + A++VFD+ + L WNAM+LG
Sbjct: 285 VHAYIDKQDVGMNALVVIALVDMYCKCGSIHKARQVFDTSRSQGLAKLSSWNAMMLGLAA 344
Query: 298 HGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKI 357
HG+ +E + LF+ L + + PD +TFI ++ A + + E + F M Y +
Sbjct: 345 HGQCQEALALFSELES-----YGLRPDNVTFIAMLMAYGHSGMADEAKALFASMAREYGV 399
Query: 358 KPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMV 417
P HY C+ + A A EAE+ +R MP M ++ +W +LLS CR G
Sbjct: 400 TPGIEHYGCLVDALARAGRLREAEDTIRAMP-----MKPDAAIWGALLSGCRLHGDAEAG 454
Query: 418 ERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLKEV 477
R A+ V+ DP+D Y +V A G+ VR M++ + ++PGC ++++ V
Sbjct: 455 ARAARGAVECDPRDSGAYVLAASVLARDGEVGRGLGVRGKMREEGVAKVPGCSMIEVDGV 514
Query: 478 VEKL 481
V +
Sbjct: 515 VHEF 518
>gi|357507205|ref|XP_003623891.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355498906|gb|AES80109.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 1288
Score = 237 bits (604), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 140/471 (29%), Positives = 245/471 (52%), Gaps = 17/471 (3%)
Query: 10 HLITSGLFFNNSFWTINLLKHS-ADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSNSCVP 68
H L F++ + N L H A F + VF ++ N++I Y
Sbjct: 818 HARVLKLGFDSDLFVSNALIHGYAGFCELGFARKVFDEMSERDLVSWNSLICGYGRCRRY 877
Query: 69 DQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLAL---KNGVDFELPVM 125
+ +V + +M ++ T V + +C G G+ + +N V+ ++ +
Sbjct: 878 SEVLVVFEEMRMADVKGDAVTMVKVVLACTVLG---EWGVVDAMIEYIEENKVEVDVYLG 934
Query: 126 NSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVV 185
N+LI+MYG +D AR +F +M R+++SWN+++ G+ ++G++ AA +LFD MP R+V+
Sbjct: 935 NTLIDMYGRRSMVDLARRVFDRMRDRNMVSWNAMIMGYGKAGNLVAARKLFDDMPHRDVI 994
Query: 186 SWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYT 245
SW MIS YS++G G +++LF+EMM + + ++ T+ASVL+AC + G +VH Y
Sbjct: 995 SWTSMISSYSQAGQFGKAVRLFQEMMVTKVKPDEITVASVLSACAHIGALDVGEAVHEYI 1054
Query: 246 VRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGI 305
+ + +I + ALID+Y KC VE VF+ M R+ V W ++I G ++G + +
Sbjct: 1055 RKYDVNADIYVGNALIDMYCKCGAVEKGLSVFEEMGKRDSVSWTSVIAGLAVNGSADSAL 1114
Query: 306 KLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYW 365
LF+ ++ V P TF+GV+ AC A ++ +G +YF M Y + P HY
Sbjct: 1115 NLFSLMLREGV-----RPTHGTFVGVLLACAHAGVVDKGLEYFESMERVYGLTPEMKHYG 1169
Query: 366 CMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFV 425
C+ +L + + A E +++MP D D ++W LLS + G + + E K +
Sbjct: 1170 CVVDLLSRSGNLGRAYEFIKRMPMDPD-----VVVWRILLSASQVHGNLHLAEIATKKLL 1224
Query: 426 DMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLKE 476
+ DP + Y N YA + +WEDV ++R LM++ + + V++ +
Sbjct: 1225 ETDPSNSGNYILSSNTYAGSNRWEDVIKMRRLMEESNVHKPSASSSVEIND 1275
Score = 122 bits (306), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 100/397 (25%), Positives = 165/397 (41%), Gaps = 65/397 (16%)
Query: 43 VFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGC 102
+F+ I P N +I+ +S + P + + Y M N+ T+ L +CA+
Sbjct: 752 LFRQIPRPTLSHWNIMIRGWSQTNQPIEAIRNYNLMYSQALFGNNLTYPFLLKACARISN 811
Query: 103 VERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSG 162
V H LK G D +L V N+LI+ Y F + AR +F +MS RDL+SWNS++ G
Sbjct: 812 VS-CTTVHARVLKLGFDSDLFVSNALIHGYAGFCELGFARKVFDEMSERDLVSWNSLICG 870
Query: 163 HVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTM 222
+ R S L +F EM + +G+ TM
Sbjct: 871 YGRCRRYSEV-------------------------------LVVFEEMRMADVKGDAVTM 899
Query: 223 ASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMAD 282
V+ AC + ++ Y ++ ++ L LID+Y + V++A+RVFD M D
Sbjct: 900 VKVVLACTVLGEWGVVDAMIEYIEENKVEVDVYLGNTLIDMYGRRSMVDLARRVFDRMRD 959
Query: 283 RNLVCWNAMILGHCIHGKPEEGIKLF-----------TALVNGTVAGGS----------- 320
RN+V WNAMI+G+ G KLF T++++ G
Sbjct: 960 RNMVSWNAMIMGYGKAGNLVAARKLFDDMPHRDVISWTSMISSYSQAGQFGKAVRLFQEM 1019
Query: 321 ----ISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAEL 376
+ PDEIT V+ AC L G + + I Y + + + ++Y
Sbjct: 1020 MVTKVKPDEITVASVLSACAHIGALDVG-EAVHEYIRKYDVNADIYVGNALIDMYCKCGA 1078
Query: 377 TEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGA 413
E+ + +M + +S+ W S+++ G+
Sbjct: 1079 VEKGLSVFEEMGKR------DSVSWTSVIAGLAVNGS 1109
Score = 93.2 bits (230), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 79/321 (24%), Positives = 154/321 (47%), Gaps = 24/321 (7%)
Query: 143 NMFVQMSPRDLIS-WNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPG 201
NM ++ P D IS +N + S + ++ A+ELF +P + WNIMI G+S++ P
Sbjct: 719 NMIKELLPTDPISIFNLLKSYALSPTNILKANELFRQIPRPTLSHWNIMIRGWSQTNQPI 778
Query: 202 CSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALI 261
+++ + M GN+ T +L AC R + + +VH ++ ++ + ALI
Sbjct: 779 EAIRNYNLMYSQALFGNNLTYPFLLKACARISNVS-CTTVHARVLKLGFDSDLFVSNALI 837
Query: 262 DLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSI 321
Y+ ++ A++VFD M++R+LV WN++I G+ + E + +F + V G
Sbjct: 838 HGYAGFCELGFARKVFDEMSERDLVSWNSLICGYGRCRRYSEVLVVFEEMRMADVKG--- 894
Query: 322 SPDEITFIGVICACVRAELLTEGRKYFRQMIDFY---KIKPNFAHYWCMANLYAGAELTE 378
D +T + V+ AC +L E MI++ K++ + + ++Y + +
Sbjct: 895 --DAVTMVKVVLACT---VLGEW-GVVDAMIEYIEENKVEVDVYLGNTLIDMYGRRSMVD 948
Query: 379 EAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFL 438
A + +M + N + W +++ G + +L F DM +D + +
Sbjct: 949 LARRVFDRMRDRN------MVSWNAMIMGYGKAGNLVAARKL---FDDMPHRDVISWTSM 999
Query: 439 LNVYAVAGQWEDVARV-RELM 458
++ Y+ AGQ+ R+ +E+M
Sbjct: 1000 ISSYSQAGQFGKAVRLFQEMM 1020
>gi|297848728|ref|XP_002892245.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297338087|gb|EFH68504.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 664
Score = 237 bits (604), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 139/503 (27%), Positives = 254/503 (50%), Gaps = 48/503 (9%)
Query: 7 IQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSNSC 66
+ AH++ G+ +S L+ S+ SPDY++ +F+ F NA+I+ + +
Sbjct: 48 VHAHILRRGVL--SSRVAAQLVSCSSLLKSPDYSLSIFRNSEERNPFVFNALIRGLTENA 105
Query: 67 VPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMN 126
+ V ++ M+ G P+ TF + S +K G G H LKN VD + V
Sbjct: 106 RFECSVRHFILMLTLGVKPDRLTFPFVLKSNSKLGFRWLGRALHAATLKNFVDCDSFVRV 165
Query: 127 SLINMYGCFGA-----------------------------------MDCARNMFVQMSPR 151
SL++MY G M A +F M R
Sbjct: 166 SLVDMYAKTGQLNHAFQVFEETPDRIKKESILLWNVLVNGYCRAKDMQMATTLFRSMPER 225
Query: 152 DLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMM 211
+ SW++++ G+V +G+++ A +LF++MPE+NVVSW +I+G+S++G+ ++ + EM+
Sbjct: 226 NSGSWSTLIKGYVDNGELNRAKQLFELMPEKNVVSWTTLINGFSQTGDYETAISTYFEML 285
Query: 212 KSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVE 271
+ G + N+ T+A+VL+AC +S G +HGY + +K + + T+L+D+Y+KC +V+
Sbjct: 286 EKGLKPNEYTVAAVLSACSKSGALGSGIRIHGYILDNGIKLDRAIGTSLLDMYAKCGEVD 345
Query: 272 VAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGV 331
A VF +M ++++ W AMI G +HG+ + I+ F ++ PDE+ F+ V
Sbjct: 346 CAATVFSNMNHKDILSWTAMIQGWAVHGRFHQAIQCFRQMMY-----SGEKPDEVVFLAV 400
Query: 332 ICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDN 391
+ AC+ + + G +F M Y I+P HY + +L A +EA E++ MP +
Sbjct: 401 LTACLNSGEVDLGLNFFDSMRLDYAIEPTLKHYVLVVDLLGRAGKLDEAHELVEYMPINP 460
Query: 392 DNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDV 451
D + W +L C+ + + + ++ +++DP+ Y FL +A G+++DV
Sbjct: 461 DLTT-----WAALYRACKAHKS-NRTDIVLQNLLELDPELRGSYIFLDKTHAAKGKYQDV 514
Query: 452 ARVRELMKKRRMGRMPGCRLVDL 474
+ R ++K+ R GC ++L
Sbjct: 515 EKRRLSLQKKVKERSMGCSYIEL 537
>gi|359495784|ref|XP_003635090.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Vitis vinifera]
Length = 616
Score = 237 bits (604), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 132/420 (31%), Positives = 223/420 (53%), Gaps = 12/420 (2%)
Query: 43 VFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGC 102
+F I + N++I Y++ + + + +M + G P+ +TFV+L C+++
Sbjct: 145 LFDDITDKTLVSWNSMIGGYAHMGNWKEAFLLFRKMREWGMEPDGFTFVNLLSVCSQSRD 204
Query: 103 VERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSG 162
++ G H GV ++ V N+L++MY G + A+ +F + ++++SW S++S
Sbjct: 205 LDLGRYVHFCIEITGVKIDIIVRNALVDMYAKCGNLHSAQAIFDRTQEKNVVSWTSMISA 264
Query: 163 HVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTM 222
+ + G + A ++FD MP +NVVSWN MIS Y + G +L LF +M S ++ T+
Sbjct: 265 YAQHGSIEVARQIFDQMPGKNVVSWNSMISCYLREGQYREALDLFNKMRNSRVVPDEATL 324
Query: 223 ASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMAD 282
S+L AC + G+ +H Y + + L +LID+Y+KC V A +F M
Sbjct: 325 VSILAACSQLGDLVMGKKIHNYILSNKGAYGVTLYNSLIDMYAKCGPVVTALDIFLEMPG 384
Query: 283 RNLVCWNAMILGHCIHGKPEEGIKLFTAL-VNGTVAGGSISPDEITFIGVICACVRAELL 341
+NLV WN +I +HG E IKLF + +GT+ PDEIT G++ AC + L+
Sbjct: 385 KNLVSWNVIIGALALHGCGLEAIKLFEEMQADGTL------PDEITLTGLLSACSHSGLV 438
Query: 342 TEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMW 401
G YF +M Y++ HY CM +L L EA E++ +MP M + ++W
Sbjct: 439 DMGLYYFDRMGVIYRVPREIEHYACMVDLLGRGGLLGEAIELIGRMP-----MKPDVVVW 493
Query: 402 VSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKR 461
+LL CR G V + +++ K ++++P Y + N+Y A +WEDV ++R+LM R
Sbjct: 494 GALLGACRIHGNVEIGKQILKQLLELEPHSGGLYVLISNIYWEAQRWEDVKKIRKLMIDR 553
Score = 157 bits (396), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 118/424 (27%), Positives = 185/424 (43%), Gaps = 71/424 (16%)
Query: 1 MKQLLQIQAHLITSGLFFNNSFWTINLLKHSA--DFGSPDYTVLVFKCINNPGTFCVNAV 58
M+ L + A +I GL N + L+ A D G Y +F I P F N++
Sbjct: 1 MRGLKLLHAQIILHGLT-NETLTLGKLISFCAVDDAGDLQYAQRMFDQIPQPNKFMYNSL 59
Query: 59 IKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGV 118
I+ YSNS P V+ + +MI +G PN +T + +C + HGLA+K G+
Sbjct: 60 IRGYSNSDDPIDAVLLFRRMICSGLSPNEFTLPFVLKACGCKSAYWEAVLVHGLAIKLGI 119
Query: 119 DFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDI 178
+ V N+LI +Y G + CAR +LFD
Sbjct: 120 GSLVFVQNALIAVYVVCGLIHCAR-------------------------------KLFDD 148
Query: 179 MPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEG 238
+ ++ +VSWN MI GY+ GN + LFR+M + G + T ++L+ C +S + G
Sbjct: 149 ITDKTLVSWNSMIGGYAHMGNWKEAFLLFRKMREWGMEPDGFTFVNLLSVCSQSRDLDLG 208
Query: 239 RSVHGYTVRTSLKPNIILDTALIDLYSKC------------------------------- 267
R VH T +K +II+ AL+D+Y+KC
Sbjct: 209 RYVHFCIEITGVKIDIIVRNALVDMYAKCGNLHSAQAIFDRTQEKNVVSWTSMISAYAQH 268
Query: 268 QKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEIT 327
+EVA+++FD M +N+V WN+MI + G+ E + LF + N V PDE T
Sbjct: 269 GSIEVARQIFDQMPGKNVVSWNSMISCYLREGQYREALDLFNKMRNSRVV-----PDEAT 323
Query: 328 FIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKM 387
+ ++ AC + L G+K ++ K Y + ++YA A +I +M
Sbjct: 324 LVSILAACSQLGDLVMGKKIHNYILS-NKGAYGVTLYNSLIDMYAKCGPVVTALDIFLEM 382
Query: 388 PEDN 391
P N
Sbjct: 383 PGKN 386
Score = 68.9 bits (167), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 71/296 (23%), Positives = 122/296 (41%), Gaps = 42/296 (14%)
Query: 23 WTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNG 82
WT +++ A GS + +F + N++I Y + + + +M +
Sbjct: 258 WT-SMISAYAQHGSIEVARQIFDQMPGKNVVSWNSMISCYLREGQYREALDLFNKMRNSR 316
Query: 83 FMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCAR 142
+P+ T VS+ +C++ G + G H L N + + + NSLI+MY G + A
Sbjct: 317 VVPDEATLVSILAACSQLGDLVMGKKIHNYILSNKGAYGVTLYNSLIDMYAKCGPVVTAL 376
Query: 143 NMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGC 202
++F++M ++L+SWN I+ A H GC
Sbjct: 377 DIFLEMPGKNLVSWNVIIGA-------LALH---------------------------GC 402
Query: 203 SL---KLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTA 259
L KLF EM G ++ T+ +L+AC S + G P I A
Sbjct: 403 GLEAIKLFEEMQADGTLPDEITLTGLLSACSHSGLVDMGLYYFDRMGVIYRVPREIEHYA 462
Query: 260 -LIDLYSKCQKVEVAQRVFDSMADR-NLVCWNAMILGHC-IHGKPEEGIKLFTALV 312
++DL + + A + M + ++V W A+ LG C IHG E G ++ L+
Sbjct: 463 CMVDLLGRGGLLGEAIELIGRMPMKPDVVVWGAL-LGACRIHGNVEIGKQILKQLL 517
>gi|62321090|dbj|BAD94184.1| hypothetical protein [Arabidopsis thaliana]
Length = 577
Score = 236 bits (603), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 139/469 (29%), Positives = 234/469 (49%), Gaps = 48/469 (10%)
Query: 34 FGSPDYTVLVFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSL 93
F D V + P F NA+ K + P + + Y++M+++ P+SYT+ SL
Sbjct: 73 FKCLDLAVSTMTQMQEPNVFVYNALFKGFVTCSHPIRSLELYVRMLRDSVSPSSYTYSSL 132
Query: 94 FGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDL 153
A + G K G F + + +LI+ Y G + AR +F +M RD
Sbjct: 133 VK--ASSFASRFGESLQAHIWKFGFGFHVKIQTTLIDFYSATGGIREARKVFDEMPERDD 190
Query: 154 ISWNSIVSGHVRSGDMSAAHEL-------------------------------FDIMPER 182
I+W ++VS + R DM +A+ L F+ MP +
Sbjct: 191 IAWTTMVSAYRRVLDMDSANSLANQMSEKNEATSNCLINGYMGLGNLEQAESLFNQMPVK 250
Query: 183 NVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVH 242
+++SW MI GYS++ ++ +F +MM+ G ++ TM++V++AC G+ VH
Sbjct: 251 DIISWTTMIKGYSQNKRYREAIAVFYKMMEEGIIPDEVTMSTVISACAHLGVLEIGKEVH 310
Query: 243 GYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPE 302
YT++ ++ + +AL+D+YSKC +E A VF ++ +NL CWN++I G HG +
Sbjct: 311 MYTLQNGFVLDVYIGSALVDMYSKCGSLERALLVFFNLPKKNLFCWNSIIEGLAAHGFAQ 370
Query: 303 EGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFA 362
E +K+F + S+ P+ +TF+ V AC A L+ EGR+ +R MID Y I N
Sbjct: 371 EALKMFAKM-----EMESVKPNAVTFVSVFTACTHAGLVDEGRRIYRSMIDDYSIVSNVE 425
Query: 363 HYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFE--SIMWVSLLSLCRFQGAVAMVERL 420
HY M +L++ A L EA E++ NM FE +++W +LL CR + + E
Sbjct: 426 HYGGMVHLFSKAGLIYEALELI-------GNMEFEPNAVIWGALLDGCRIHKNLVIAEIA 478
Query: 421 AKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRM-PG 468
+ ++P + Y L+++YA +W DVA +R M++ + ++ PG
Sbjct: 479 FNKLMVLEPMNSGYYFLLVSMYAEQNRWRDVAEIRGRMRELGIEKICPG 527
>gi|356502620|ref|XP_003520116.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g22070-like [Glycine max]
Length = 785
Score = 236 bits (603), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 137/465 (29%), Positives = 243/465 (52%), Gaps = 15/465 (3%)
Query: 19 NNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQM 78
+ S W + H F D + +F + +P N++I Y + + + + M
Sbjct: 210 DTSTWNTMISMH-MQFCQFDLALALFDQMTDPDIVSWNSIITGYCHQGYDIRALETFSFM 268
Query: 79 IKNGFM-PNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGA 137
+K+ + P+ +T S+ +CA ++ G H ++ VD V N+LI+MY GA
Sbjct: 269 LKSSSLKPDKFTLGSVLSACANRESLKLGKQIHAHIVRADVDIAGAVGNALISMYAKSGA 328
Query: 138 MDCARNMF-VQMSPR-DLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYS 195
++ A + + +P ++I++ S++ G+ + GD+ A +FD + R+VV+W MI GY+
Sbjct: 329 VEVAHRIVEITGTPSLNVIAFTSLLDGYFKIGDIDPARAIFDSLKHRDVVAWTAMIVGYA 388
Query: 196 KSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNII 255
++G +L LFR M++ G + N+ T+A+VL+ A + G+ +H +R ++
Sbjct: 389 QNGLISDALVLFRLMIREGPKPNNYTLAAVLSVISSLASLDHGKQLHAVAIRLEEVSSVS 448
Query: 256 LDTALIDLYSKCQKVEVAQRVFDSMAD-RNLVCWNAMILGHCIHGKPEEGIKLFTALVNG 314
+ ALI +YS+ ++ A+++F+ + R+ + W +MIL HG E I+LF ++
Sbjct: 449 VGNALITMYSRSGSIKDARKIFNHICSYRDTLTWTSMILSLAQHGLGNEAIELFEKMLR- 507
Query: 315 TVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGA 374
++ PD IT++GV+ AC L+ +G+ YF M + + I+P +HY CM +L A
Sbjct: 508 ----INLKPDHITYVGVLSACTHVGLVEQGKSYFNLMKNVHNIEPTSSHYACMIDLLGRA 563
Query: 375 ELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSR 434
L EEA +R MP + D + W SLLS CR V + + A+ + +DP +
Sbjct: 564 GLLEEAYNFIRNMPIEPD-----VVAWGSLLSSCRVHKYVDLAKVAAEKLLLIDPNNSGA 618
Query: 435 YQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLKEVVE 479
Y L N + G+WED A+VR+ MK + + + G V +K V
Sbjct: 619 YLALANTLSACGKWEDAAKVRKSMKDKAVKKEQGFSWVQIKNKVH 663
Score = 157 bits (398), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 131/510 (25%), Positives = 221/510 (43%), Gaps = 74/510 (14%)
Query: 8 QAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSNSCV 67
AH + + +F +L A G+ D VF I P + +I Y++ +
Sbjct: 66 DAHRLFDEMPLKTTFSWNTILSAHAKAGNLDSARRVFDEIPQPDSVSWTTMIVGYNHLGL 125
Query: 68 PDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNS 127
V +L+M+ +G P +TF ++ SCA ++ G H +K G +PV NS
Sbjct: 126 FKSAVHAFLRMVSSGISPTQFTFTNVLASCAAAQALDVGKKVHSFVVKLGQSGVVPVANS 185
Query: 128 LINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSW 187
L+NMY G A+ +F +M +D +WN+++S H++ A LFD M + ++VSW
Sbjct: 186 LLNMYAKCGDSVMAKVVFDRMRLKDTSTWNTMISMHMQFCQFDLALALFDQMTDPDIVSW 245
Query: 188 NIMISGYSKSGNPGCSLKLFREMMKSGFRGNDK-TMASVLTACGRSARFNEGRSVHGYTV 246
N +I+GY G +L+ F M+KS DK T+ SVL+AC G+ +H + V
Sbjct: 246 NSIITGYCHQGYDIRALETFSFMLKSSSLKPDKFTLGSVLSACANRESLKLGKQIHAHIV 305
Query: 247 RTSLKPNIILDTALIDLYSKCQKVEVAQR------------------------------- 275
R + + ALI +Y+K VEVA R
Sbjct: 306 RADVDIAGAVGNALISMYAKSGAVEVAHRIVEITGTPSLNVIAFTSLLDGYFKIGDIDPA 365
Query: 276 --VFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALV-------NGTVA--------- 317
+FDS+ R++V W AMI+G+ +G + + LF ++ N T+A
Sbjct: 366 RAIFDSLKHRDVVAWTAMIVGYAQNGLISDALVLFRLMIREGPKPNNYTLAAVLSVISSL 425
Query: 318 ----------GGSISPDEITFIGVICACV----RAELLTEGRKYFRQMIDFYKIKPNFAH 363
+I +E++ + V A + R+ + + RK F + + +
Sbjct: 426 ASLDHGKQLHAVAIRLEEVSSVSVGNALITMYSRSGSIKDARKIFNHICSYRDTLTWTSM 485
Query: 364 YWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVE---RL 420
+A G E E E++LR N+ + I +V +LS C G V + L
Sbjct: 486 ILSLAQHGLGNEAIELFEKMLRI------NLKPDHITYVGVLSACTHVGLVEQGKSYFNL 539
Query: 421 AKSFVDMDPQDFSRYQFLLNVYAVAGQWED 450
K+ +++P S Y ++++ AG E+
Sbjct: 540 MKNVHNIEPTS-SHYACMIDLLGRAGLLEE 568
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 84/347 (24%), Positives = 156/347 (44%), Gaps = 41/347 (11%)
Query: 91 VSLFGSCAKTGCVERGGMCHGLALKNGVDF-ELPVMNSLINMYGCFGAMDCARNMFVQMS 149
V L S K+ G H +K+G+ + + + N+L+N+Y G+ A +F +M
Sbjct: 16 VHLLQSAIKSRDPFIGRCIHARIIKHGLRYLGVFLTNNLLNLYVKTGSSSDAHRLFDEMP 75
Query: 150 PRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFRE 209
+ SWN+I+S H ++G++ +A +FD +P+ + VSW MI GY+ G ++ F
Sbjct: 76 LKTTFSWNTILSAHAKAGNLDSARRVFDEIPQPDSVSWTTMIVGYNHLGLFKSAVHAFLR 135
Query: 210 MMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQ- 268
M+ SG T +VL +C + + G+ VH + V+ + + +L+++Y+KC
Sbjct: 136 MVSSGISPTQFTFTNVLASCAAAQALDVGKKVHSFVVKLGQSGVVPVANSLLNMYAKCGD 195
Query: 269 ------------------------------KVEVAQRVFDSMADRNLVCWNAMILGHCIH 298
+ ++A +FD M D ++V WN++I G+C
Sbjct: 196 SVMAKVVFDRMRLKDTSTWNTMISMHMQFCQFDLALALFDQMTDPDIVSWNSIITGYCHQ 255
Query: 299 GKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIK 358
G ++ F+ ++ + S+ PD+ T V+ AC E L G++ I + ++
Sbjct: 256 GYDIRALETFSFMLKSS----SLKPDKFTLGSVLSACANRESLKLGKQ-----IHAHIVR 306
Query: 359 PNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLL 405
+ + N A E+ ++ E S I + SLL
Sbjct: 307 ADVDIAGAVGNALISMYAKSGAVEVAHRIVEITGTPSLNVIAFTSLL 353
>gi|297745590|emb|CBI40755.3| unnamed protein product [Vitis vinifera]
Length = 789
Score = 236 bits (603), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 123/442 (27%), Positives = 233/442 (52%), Gaps = 12/442 (2%)
Query: 43 VFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGC 102
VF + ++I + + ++ +V + QM + + +T ++ G C
Sbjct: 303 VFDGLTEHNAVSWTSLIGGVAQAGFQEEALVLFNQMREVPVASDQFTLATVLGVCLSQKD 362
Query: 103 VERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSG 162
+ G H + G+D +PV N+L+ MY G + A + F M RD+ISW ++++
Sbjct: 363 ISIGEQLHAHTITRGLDSSVPVANALVTMYAKCGDVWKANHAFELMPIRDIISWTAMITA 422
Query: 163 HVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTM 222
++GD+ A E FD MPERNV+SWN M++ Y + G LK++ +M++ G + + T
Sbjct: 423 FSQAGDVEKAREYFDKMPERNVISWNSMLATYMQRGYWEEGLKVYIQMLREGVKTDWITF 482
Query: 223 ASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMAD 282
++ ++AC A G + + N+ + +++ +YS+C ++E AQ++F S+
Sbjct: 483 STSISACADLAVLILGNQILAQAEKLGFSSNVSVANSVVTMYSRCGQIEEAQKMFSSIVM 542
Query: 283 RNLVCWNAMILGHCIHGKPEEGIKLFTALVN-GTVAGGSISPDEITFIGVICACVRAELL 341
+NLV WNAM+ G+ +G+ + I++F ++N G V PD+I+++ V+ C + +
Sbjct: 543 KNLVSWNAMMAGYAQNGQGRKVIEIFEKMLNIGNV------PDQISYVSVLSGCSHSGFV 596
Query: 342 TEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMW 401
+EG+ YF M + I P H+ CM +L A E+A+ ++ +MP + + +W
Sbjct: 597 SEGQYYFLSMTKDHGISPMSEHFVCMVDLLGRAGQLEQAKNLINQMPFKPN-----AAIW 651
Query: 402 VSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKR 461
+LL+ CR G + E K+ +++D + Y L N+Y+ +G+ + V VR+LM+ +
Sbjct: 652 GALLAACRIHGNTKLAELAVKNLLELDAEGPGSYCLLANIYSESGKIQGVTNVRKLMRDK 711
Query: 462 RMGRMPGCRLVDLKEVVEKLKV 483
+ + PGC +++ V V
Sbjct: 712 GVRKNPGCSWIEVDNRVHVFTV 733
Score = 151 bits (381), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 126/460 (27%), Positives = 205/460 (44%), Gaps = 29/460 (6%)
Query: 6 QIQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSNS 65
++ A LI GL ++ F +LL ++ G VF I P + N +I +++S
Sbjct: 25 KLHAQLIFMGLK-SSIFLQNHLLNMYSNCGLISDAYRVFGGIMFPNVYSWNTMISGFADS 83
Query: 66 C-----------VPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLAL 114
+P++ V + M+ +G+ N ++ S G ++ HG A
Sbjct: 84 GQMREAEKLFEKMPERDSVSWNSMM-SGYFHNGELEATIKAS-GSLGYLKLALQLHGFAE 141
Query: 115 KNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHE 174
K + V S+++MY GAMD A+ +F + L WNS++ G+ + G + A E
Sbjct: 142 KFDFGIDTCVETSVLDMYIKCGAMDFAQKVFCRTPNPSLFCWNSMIYGYSKYGSVKKALE 201
Query: 175 LFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSAR 234
LF MPER+ VSWN MIS S+ G +L F EM GFR N T ASVL+AC
Sbjct: 202 LFAKMPERDTVSWNTMISILSQHGFGAETLNTFLEMWNQGFRPNSMTYASVLSACTSIYD 261
Query: 235 FNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILG 294
G +H VR ++ LID+Y+KC ++E A++VFD + + N V W ++I G
Sbjct: 262 LEWGAHLHARIVRMEPCLDVYAGCGLIDMYAKCGRLESARQVFDGLTEHNAVSWTSLIGG 321
Query: 295 HCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDF 354
G EE + LF + VA D+ T V+ C+ + ++ G + I
Sbjct: 322 VAQAGFQEEALVLFNQMREVPVAS-----DQFTLATVLGVCLSQKDISIGEQLHAHTIT- 375
Query: 355 YKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAV 414
+ + + +YA +A MP + I W ++++ G
Sbjct: 376 RGLDSSVPVANALVTMYAKCGDVWKANHAFELMPIR------DIISWTAMITAFSQAGD- 428
Query: 415 AMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARV 454
VE+ + F M ++ + +L Y G WE+ +V
Sbjct: 429 --VEKAREYFDKMPERNVISWNSMLATYMQRGYWEEGLKV 466
Score = 107 bits (268), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 84/350 (24%), Positives = 150/350 (42%), Gaps = 59/350 (16%)
Query: 84 MPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARN 143
M S F CA + H + G+ + + N L+NMY G + A
Sbjct: 1 MEMSQKFYESMKECASLRSIPIARKLHAQLIFMGLKSSIFLQNHLLNMYSNCGLISDAYR 60
Query: 144 MFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCS 203
+F + ++ SWN+++SG SG M A +LF+ MPER+ VSWN M+SGY +G +
Sbjct: 61 VFGGIMFPNVYSWNTMISGFADSGQMREAEKLFEKMPERDSVSWNSMMSGYFHNGELEAT 120
Query: 204 LKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDL 263
+K A G +HG+ + + ++T+++D+
Sbjct: 121 IK----------------------ASGSLGYLKLALQLHGFAEKFDFGIDTCVETSVLDM 158
Query: 264 YSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVN-GTVAGGSI- 321
Y KC ++ AQ+VF + +L CWN+MI G+ +G ++ ++LF + TV+ ++
Sbjct: 159 YIKCGAMDFAQKVFCRTPNPSLFCWNSMIYGYSKYGSVKKALELFAKMPERDTVSWNTMI 218
Query: 322 ------------------------SPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKI 357
P+ +T+ V+ AC L G +++ ++
Sbjct: 219 SILSQHGFGAETLNTFLEMWNQGFRPNSMTYASVLSACTSIYDLEWGAHLHARIV---RM 275
Query: 358 KPNFAHYW-C-MANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLL 405
+P Y C + ++YA E A ++ + E N ++ W SL+
Sbjct: 276 EPCLDVYAGCGLIDMYAKCGRLESARQVFDGLTEHN------AVSWTSLI 319
>gi|224143620|ref|XP_002325018.1| predicted protein [Populus trichocarpa]
gi|222866452|gb|EEF03583.1| predicted protein [Populus trichocarpa]
Length = 695
Score = 236 bits (603), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 130/475 (27%), Positives = 247/475 (52%), Gaps = 45/475 (9%)
Query: 42 LVFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTG 101
++F + + + N VI ++ + + +L+M K G P YT VS+ +C +
Sbjct: 110 VIFDNMPSRDSVSYNTVISGFAGNGRGGPALGVFLRMQKEGLKPTEYTHVSVLNACTQLL 169
Query: 102 CVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVS 161
+ RG HG + + + V N+L ++Y G +D AR +F +M R++++WN ++S
Sbjct: 170 DLRRGKQIHGRIIICNLGGNVFVCNALTDLYARCGEIDQARRLFDRMVIRNVVTWNLMIS 229
Query: 162 GH-----------------------------------VRSGDMSAAHELFDIMPERNVVS 186
G+ +++G + A ++F + E++ V
Sbjct: 230 GYLKNRQPEKCIDLFHEMQVSNLKPDQVTASSVLGAYIQAGYIDEARKVFGEIREKDEVC 289
Query: 187 WNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTV 246
W IMI G +++G +L LF EM+ R + T++SV+++C + A G+ VHG
Sbjct: 290 WTIMIVGCAQNGKEEDALLLFSEMLLENARPDGYTISSVVSSCAKLASLYHGQVVHGKAF 349
Query: 247 RTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIK 306
+ ++++ +AL+D+Y KC A +F +M RN+V WN+MI G+ ++G+ E +
Sbjct: 350 LMGVNDDLLVSSALVDMYCKCGVTRDAWTIFSTMQTRNVVSWNSMIGGYALNGQDLEALS 409
Query: 307 LFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWC 366
L+ ++ ++ PD +TF+GV+ ACV A L+ EG++YF M D + ++P HY C
Sbjct: 410 LYENMLE-----ENLKPDSVTFVGVLSACVHAGLVEEGKEYFCSMSDQHGLEPTPDHYAC 464
Query: 367 MANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVD 426
M NL+ + ++A +++ M ++ + S++W ++LS+C +G + E A+ ++
Sbjct: 465 MVNLFGRSGHMDKAVDLISSMSQEPN-----SLIWTTVLSVCVMKGDIKHGEMAARCLIE 519
Query: 427 MDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLKEVVEKL 481
++P + Y L N+YA G+W+DVA +R LMK + + + +++ V K
Sbjct: 520 LNPFNAVPYIMLSNMYAARGRWKDVASIRSLMKSKHVKKFSAYSWIEIDNEVHKF 574
Score = 156 bits (394), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 80/228 (35%), Positives = 134/228 (58%), Gaps = 5/228 (2%)
Query: 124 VMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERN 183
+ N L+N+Y G + AR +F +M+ RD SWN+++S + +SG + +FD MP R+
Sbjct: 60 IHNRLLNLYAKSGEISHARKLFDEMTQRDNFSWNAMLSLYAKSGLVEDLRVIFDNMPSRD 119
Query: 184 VVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHG 243
VS+N +ISG++ +G G +L +F M K G + + T SVL AC + G+ +HG
Sbjct: 120 SVSYNTVISGFAGNGRGGPALGVFLRMQKEGLKPTEYTHVSVLNACTQLLDLRRGKQIHG 179
Query: 244 YTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEE 303
+ +L N+ + AL DLY++C +++ A+R+FD M RN+V WN MI G+ + +PE+
Sbjct: 180 RIIICNLGGNVFVCNALTDLYARCGEIDQARRLFDRMVIRNVVTWNLMISGYLKNRQPEK 239
Query: 304 GIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQM 351
I LF + ++ PD++T V+ A ++A + E RK F ++
Sbjct: 240 CIDLFHEM-----QVSNLKPDQVTASSVLGAYIQAGYIDEARKVFGEI 282
>gi|193806402|sp|Q56X05.2|PPR15_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g06145; AltName: Full=Protein EMBRYO DEFECTIVE 1444
Length = 577
Score = 236 bits (603), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 139/469 (29%), Positives = 234/469 (49%), Gaps = 48/469 (10%)
Query: 34 FGSPDYTVLVFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSL 93
F D V + P F NA+ K + P + + Y++M+++ P+SYT+ SL
Sbjct: 73 FKRLDLAVSTMTQMQEPNVFVYNALFKGFVTCSHPIRSLELYVRMLRDSVSPSSYTYSSL 132
Query: 94 FGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDL 153
A + G K G F + + +LI+ Y G + AR +F +M RD
Sbjct: 133 VK--ASSFASRFGESLQAHIWKFGFGFHVKIQTTLIDFYSATGRIREARKVFDEMPERDD 190
Query: 154 ISWNSIVSGHVRSGDMSAAHEL-------------------------------FDIMPER 182
I+W ++VS + R DM +A+ L F+ MP +
Sbjct: 191 IAWTTMVSAYRRVLDMDSANSLANQMSEKNEATSNCLINGYMGLGNLEQAESLFNQMPVK 250
Query: 183 NVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVH 242
+++SW MI GYS++ ++ +F +MM+ G ++ TM++V++AC G+ VH
Sbjct: 251 DIISWTTMIKGYSQNKRYREAIAVFYKMMEEGIIPDEVTMSTVISACAHLGVLEIGKEVH 310
Query: 243 GYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPE 302
YT++ ++ + +AL+D+YSKC +E A VF ++ +NL CWN++I G HG +
Sbjct: 311 MYTLQNGFVLDVYIGSALVDMYSKCGSLERALLVFFNLPKKNLFCWNSIIEGLAAHGFAQ 370
Query: 303 EGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFA 362
E +K+F + S+ P+ +TF+ V AC A L+ EGR+ +R MID Y I N
Sbjct: 371 EALKMFAKM-----EMESVKPNAVTFVSVFTACTHAGLVDEGRRIYRSMIDDYSIVSNVE 425
Query: 363 HYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFE--SIMWVSLLSLCRFQGAVAMVERL 420
HY M +L++ A L EA E++ NM FE +++W +LL CR + + E
Sbjct: 426 HYGGMVHLFSKAGLIYEALELI-------GNMEFEPNAVIWGALLDGCRIHKNLVIAEIA 478
Query: 421 AKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRM-PG 468
+ ++P + Y L+++YA +W DVA +R M++ + ++ PG
Sbjct: 479 FNKLMVLEPMNSGYYFLLVSMYAEQNRWRDVAEIRGRMRELGIEKICPG 527
>gi|115463499|ref|NP_001055349.1| Os05g0370000 [Oryza sativa Japonica Group]
gi|54287484|gb|AAV31228.1| unknown protein [Oryza sativa Japonica Group]
gi|113578900|dbj|BAF17263.1| Os05g0370000 [Oryza sativa Japonica Group]
Length = 664
Score = 236 bits (602), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 139/439 (31%), Positives = 221/439 (50%), Gaps = 14/439 (3%)
Query: 50 PGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMC 109
P N ++ + S V+ ++M GF+P++ + G V G
Sbjct: 119 PNVITWNGLVSGLNRSGRARDAVLALVRMHGEGFLPDATGVSCALSAVGDVGDVAVGEQL 178
Query: 110 HGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDM 169
HG +K G + V +LI+MYG G D +F + S D+ S N++V+G R+ +
Sbjct: 179 HGYVVKAGCRLDACVATALIDMYGKCGRADEIVRVFDESSHMDVASCNALVAGLSRNAQV 238
Query: 170 SAAHELFDIMPER----NVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASV 225
S A LF R NVVSW +++ ++G ++ LFREM G N T+ V
Sbjct: 239 SEALRLFREFVGRGIELNVVSWTSIVACCVQNGRDLEAVDLFREMQSEGIEPNSVTIPCV 298
Query: 226 LTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNL 285
L A A GRS H +++R +I + +AL+D+Y+KC +V A+ +F++M RN+
Sbjct: 299 LPAFANIAALMHGRSAHCFSLRKGFHHDIYVGSALVDMYAKCGRVRDARMIFEAMPYRNV 358
Query: 286 VCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGR 345
V WNAMI G+ +HG+ E ++LF ++ + PD +TF V+ AC +A EGR
Sbjct: 359 VSWNAMIGGYAMHGEAENAVRLFRSMQSSKE-----KPDLVTFTCVLGACSQAGWTEEGR 413
Query: 346 KYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLL 405
YF +M + I P HY CM L A ++A +I+ +MP + D +W SLL
Sbjct: 414 SYFNEMQHKHGISPRMEHYACMVTLLGRAGKLDDAYDIINQMPFEPDG-----CIWGSLL 468
Query: 406 SLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGR 465
CR G V + E A++ ++P++ Y L N+YA W+ V R+R++MK + +
Sbjct: 469 GSCRVHGNVVLAEVAAENLFQLEPENAGNYVLLSNIYASKKMWDGVNRLRDMMKTVGLKK 528
Query: 466 MPGCRLVDLKEVVEKLKVG 484
GC +++K V L G
Sbjct: 529 EKGCSWIEIKNKVHMLLAG 547
Score = 112 bits (279), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 72/260 (27%), Positives = 126/260 (48%), Gaps = 10/260 (3%)
Query: 117 GVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELF 176
GV + V +SL++ Y FGA AR++ M R ++ W+++++ H GD A L
Sbjct: 50 GVSRDAFVASSLLHAYLRFGATADARSVLDGMPHRTVVGWSALIAAHASHGDAEGAWGLL 109
Query: 177 DIMP----ERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRS 232
+ M E NV++WN ++SG ++SG ++ M GF + ++ L+A G
Sbjct: 110 ERMRSDGVEPNVITWNGLVSGLNRSGRARDAVLALVRMHGEGFLPDATGVSCALSAVGDV 169
Query: 233 ARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMI 292
G +HGY V+ + + + TALID+Y KC + + RVFD + ++ NA++
Sbjct: 170 GDVAVGEQLHGYVVKAGCRLDACVATALIDMYGKCGRADEIVRVFDESSHMDVASCNALV 229
Query: 293 LGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMI 352
G + + E ++LF V G I + +++ ++ CV+ E FR+M
Sbjct: 230 AGLSRNAQVSEALRLFREFV-----GRGIELNVVSWTSIVACCVQNGRDLEAVDLFREM- 283
Query: 353 DFYKIKPNFAHYWCMANLYA 372
I+PN C+ +A
Sbjct: 284 QSEGIEPNSVTIPCVLPAFA 303
Score = 42.0 bits (97), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 43/180 (23%), Positives = 81/180 (45%), Gaps = 12/180 (6%)
Query: 42 LVFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTG 101
++F+ + NA+I Y+ + V + M + P+ TF + G+C++ G
Sbjct: 348 MIFEAMPYRNVVSWNAMIGGYAMHGEAENAVRLFRSMQSSKEKPDLVTFTCVLGACSQAG 407
Query: 102 CVERG-GMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQM--SPRDLISWNS 158
E G + + K+G+ + ++ + G G +D A ++ QM P I W S
Sbjct: 408 WTEEGRSYFNEMQHKHGISPRMEHYACMVTLLGRAGKLDDAYDIINQMPFEPDGCI-WGS 466
Query: 159 I-----VSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKS 213
+ V G+V ++ AA LF + PE N ++ +++S S + R+MMK+
Sbjct: 467 LLGSCRVHGNVVLAEV-AAENLFQLEPE-NAGNY-VLLSNIYASKKMWDGVNRLRDMMKT 523
>gi|413943789|gb|AFW76438.1| hypothetical protein ZEAMMB73_890738 [Zea mays]
Length = 529
Score = 236 bits (602), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 146/475 (30%), Positives = 241/475 (50%), Gaps = 18/475 (3%)
Query: 6 QIQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCV--NAVIKAYS 63
++ A + +G F +++ +L++ G D VF P F V N +++ Y
Sbjct: 67 KVHAAAVKTG-FRWDAYTACSLMEMYTMLGRADSARRVFD--EMPQRFLVLWNMMMRCYI 123
Query: 64 NSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGV-DFEL 122
V +QM G P+ T V+ +C++ G + G H + +GV F L
Sbjct: 124 RCGRFTAAVALAVQMESGGATPDRVTLVTAVTACSRAGDLNLGRRIH--SYMDGVFGFSL 181
Query: 123 PVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPER 182
PV N+L++MY G ++ A MF QM R++ISW +VSG+ +G + A F ++
Sbjct: 182 PVANALLDMYTKNGYLEEAVKMFEQMPERNIISWTILVSGYGIAGQLDKARVFFYQCTQK 241
Query: 183 NVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVH 242
+++ W MI+ + G+ +L LFR+M + T+ ++LT C ++G +H
Sbjct: 242 DLILWTSMINACVQHGSFEEALILFRDMQLQRVEPDKFTVVTLLTCCANIGALDQGEWIH 301
Query: 243 GYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPE 302
Y ++K + +L TALI++YSKC V+ + ++F M ++ W A+I G +G+
Sbjct: 302 QYAESRNMKIDAVLGTALIEMYSKCGHVDKSLQIFGRMQGKDAAAWTAIICGLATNGQAS 361
Query: 303 EGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFA 362
+ ++LF + PD ITFIGV+ AC L+ EG++YF+ M + Y I+P
Sbjct: 362 KALELFEEMQR-----SKTKPDGITFIGVLSACCHGGLVDEGQRYFQAMKEVYHIEPRIE 416
Query: 363 HYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAK 422
HY C+ NL A L EAE+++ MP +ND M ++ +LL+ C+ G V M E L K
Sbjct: 417 HYSCLVNLLGHAGLLYEAEKLITDMPVNNDTMP----LFGALLTACKANGNVEMSEWLTK 472
Query: 423 SFVDMDPQDFSRYQFLL-NVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLKE 476
D L+ NVYA A +WE+ RVR M + + GC ++++KE
Sbjct: 473 RIAKEDCSPNPDVNVLMSNVYATASRWEEAIRVRSKMTNPAVKKTAGCSMIEVKE 527
Score = 95.9 bits (237), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 88/411 (21%), Positives = 170/411 (41%), Gaps = 55/411 (13%)
Query: 56 NAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALK 115
N +I+ + + + Y + G +SYT+ + + G H A+K
Sbjct: 15 NVLIRTLARRGSFSRVMAVYYDLRARGLAADSYTYPFVLRAIGTMKLSVEGRKVHAAAVK 74
Query: 116 NGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHEL 175
G ++ SL+ MY G D AR +F +M R L+ WN ++ ++R G +AA
Sbjct: 75 TGFRWDAYTACSLMEMYTMLGRADSARRVFDEMPQRFLVLWNMMMRCYIRCGRFTAA--- 131
Query: 176 FDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARF 235
+ L +M G + T+ + +TAC R+
Sbjct: 132 ----------------------------VALAVQMESGGATPDRVTLVTAVTACSRAGDL 163
Query: 236 NEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGH 295
N GR +H Y + ++ + AL+D+Y+K +E A ++F+ M +RN++ W ++ G+
Sbjct: 164 NLGRRIHSY-MDGVFGFSLPVANALLDMYTKNGYLEEAVKMFEQMPERNIISWTILVSGY 222
Query: 296 CIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFY 355
I G+ ++ F D I + +I ACV+ E FR M
Sbjct: 223 GIAGQLDKARVFFYQCTQ---------KDLILWTSMINACVQHGSFEEALILFRDM-QLQ 272
Query: 356 KIKPN----FAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQ 411
+++P+ C AN+ A ++ E I + ++ NM ++++ +L+ +
Sbjct: 273 RVEPDKFTVVTLLTCCANIGA----LDQGEWIHQY--AESRNMKIDAVLGTALIEM---Y 323
Query: 412 GAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRR 462
V++ + F M +D + + ++ A GQ + E M++ +
Sbjct: 324 SKCGHVDKSLQIFGRMQGKDAAAWTAIICGLATNGQASKALELFEEMQRSK 374
Score = 85.9 bits (211), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 72/287 (25%), Positives = 125/287 (43%), Gaps = 23/287 (8%)
Query: 179 MPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEG 238
MP R+ N++I ++ G+ + ++ ++ G + T VL A G EG
Sbjct: 9 MPLRDC---NVLIRTLARRGSFSRVMAVYYDLRARGLAADSYTYPFVLRAIGTMKLSVEG 65
Query: 239 RSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIH 298
R VH V+T + + +L+++Y+ + + A+RVFD M R LV WN M+ +
Sbjct: 66 RKVHAAAVKTGFRWDAYTACSLMEMYTMLGRADSARRVFDEMPQRFLVLWNMMMRCYIRC 125
Query: 299 GKPEEGIKLFTALVNGTVA--GGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYK 356
G+ FTA V V G +PD +T + + AC RA L GR+ M +
Sbjct: 126 GR-------FTAAVALAVQMESGGATPDRVTLVTAVTACSRAGDLNLGRRIHSYMDGVFG 178
Query: 357 IKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAM 416
A+ + ++Y EEA ++ +MPE N I W L+S G
Sbjct: 179 FSLPVAN--ALLDMYTKNGYLEEAVKMFEQMPERN------IISWTILVS---GYGIAGQ 227
Query: 417 VERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRM 463
+++ F +D + ++N G +E+ + M+ +R+
Sbjct: 228 LDKARVFFYQCTQKDLILWTSMINACVQHGSFEEALILFRDMQLQRV 274
>gi|195647336|gb|ACG43136.1| pentatricopeptide repeat protein PPR868-14 [Zea mays]
Length = 788
Score = 236 bits (602), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 142/407 (34%), Positives = 214/407 (52%), Gaps = 13/407 (3%)
Query: 70 QGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLI 129
+ + Y QM+ +G PN F S+ +CA + G H ALK G L V +SLI
Sbjct: 362 EALKLYSQMLADGCRPNISCFSSVLSACATLQDLRGGTRIHANALKMGSSTNLFVSSSLI 421
Query: 130 NMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNI 189
+MY A+ +F + ++ + WNS++SG+ +G M A LF+ MP RN VSWN
Sbjct: 422 DMYCKCKQCTYAQRVFNSLPEKNTVCWNSLISGYSWNGKMVEAEGLFNKMPARNSVSWNT 481
Query: 190 MISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTS 249
MISGY+++ G +L F M+ SG + T++SVL AC GR VH V+
Sbjct: 482 MISGYAENRRFGDALNYFYAMLASGHIPGEITLSSVLLACANLCSLEMGRMVHAEIVKLG 541
Query: 250 LKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFT 309
++ NI + TAL D+Y+K ++ ++RVF M ++N + W AM+ G +G EE I LF
Sbjct: 542 IEDNIFMGTALSDMYAKSGDLDSSRRVFYQMPEKNNITWTAMVQGLAENGFAEESISLFE 601
Query: 310 ALV-NGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMA 368
++ NG I+P+E TF+ ++ AC L+ + YF M + I P HY CM
Sbjct: 602 DMIENG------IAPNEHTFLAILFACSHCGLVEQAIHYFETM-QAHGIPPKSKHYTCMV 654
Query: 369 NLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMD 428
++ A A EAEE+L K+ + D S W SLLS C + ER AK +++
Sbjct: 655 DVLARAGCLPEAEELLMKVSSELDTSS-----WSSLLSACSTYRNKEIGERAAKKLHELE 709
Query: 429 PQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLK 475
+ + Y L N+YA G+W+D A R LM+ + + GC + L+
Sbjct: 710 KDNTAGYVLLSNMYASCGKWKDAAETRILMQGASLKKDAGCSWLQLR 756
Score = 160 bits (406), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 103/378 (27%), Positives = 178/378 (47%), Gaps = 36/378 (9%)
Query: 56 NAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALK 115
A+I + + + + +M+ PN T + + +C G + GLA+K
Sbjct: 215 TAMISGFVRNELHKDAFPVFRKMLTCSVRPNVVTLICVIKACVGAGEFDLAMGVVGLAVK 274
Query: 116 -NGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHE 174
N + + V NSLI +Y G A +F M RD++SW +++ + GD+ A
Sbjct: 275 CNLFEKSIEVHNSLITLYLRMGDAAAAHRVFDDMEVRDVVSWTALLDVYADLGDLYGARR 334
Query: 175 LFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSAR 234
+ D MP RN VSW +I+ + + G+ +LKL+ +M+ G R N +SVL+AC
Sbjct: 335 VLDAMPARNEVSWGTLIARHEQKGDTAEALKLYSQMLADGCRPNISCFSSVLSACATLQD 394
Query: 235 FNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILG 294
G +H ++ N+ + ++LID+Y KC++ AQRVF+S+ ++N VCWN++I G
Sbjct: 395 LRGGTRIHANALKMGSSTNLFVSSSLIDMYCKCKQCTYAQRVFNSLPEKNTVCWNSLISG 454
Query: 295 HCIHGKPEEGIKLF-----------TALVNG----------------TVAGGSISPDEIT 327
+ +GK E LF +++G +A G I P EIT
Sbjct: 455 YSWNGKMVEAEGLFNKMPARNSVSWNTMISGYAENRRFGDALNYFYAMLASGHI-PGEIT 513
Query: 328 FIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKM 387
V+ AC L GR +++ I+ N ++++YA + + + + +M
Sbjct: 514 LSSVLLACANLCSLEMGRMVHAEIVKL-GIEDNIFMGTALSDMYAKSGDLDSSRRVFYQM 572
Query: 388 PEDNDNMSFESIMWVSLL 405
PE N+ I W +++
Sbjct: 573 PEKNN------ITWTAMV 584
Score = 86.7 bits (213), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 91/423 (21%), Positives = 165/423 (39%), Gaps = 81/423 (19%)
Query: 87 SYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCF---GAMDCARN 143
S T ++ +GC+ H A ++G+ + V ++L+ Y F D A
Sbjct: 80 SATSTTMPSYAPSSGCLPLVLSLHAHAFRSGLTADRSVASNLLTAYAAFTRAADRDQAFR 139
Query: 144 MFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCS 203
V +++ +VS HV++GD+++A LF MPE++VVS+ M+ K G+ +
Sbjct: 140 DCVAADAASSFTYDFMVSEHVKAGDIASARRLFYGMPEKSVVSYTTMVDALMKRGSVRDA 199
Query: 204 LKL-------------------------------FREMMKSGFRGNDKTMASVLTACGRS 232
++L FR+M+ R N T+ V+ AC +
Sbjct: 200 VELYERCPLHSVAFFTAMISGFVRNELHKDAFPVFRKMLTCSVRPNVVTLICVIKACVGA 259
Query: 233 ARFNEGRSVHGYTVRTSLKP--------------------------------NIILDTAL 260
F+ V G V+ +L +++ TAL
Sbjct: 260 GEFDLAMGVVGLAVKCNLFEKSIEVHNSLITLYLRMGDAAAAHRVFDDMEVRDVVSWTAL 319
Query: 261 IDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGS 320
+D+Y+ + A+RV D+M RN V W +I H G E +KL++ ++
Sbjct: 320 LDVYADLGDLYGARRVLDAMPARNEVSWGTLIARHEQKGDTAEALKLYSQML-----ADG 374
Query: 321 ISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEA 380
P+ F V+ AC + L G + + N + ++Y + A
Sbjct: 375 CRPNISCFSSVLSACATLQDLRGGTRIHANALKMGS-STNLFVSSSLIDMYCKCKQCTYA 433
Query: 381 EEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLN 440
+ + +PE N ++ W SL+S + G + E L F M ++ + +++
Sbjct: 434 QRVFNSLPEKN------TVCWNSLISGYSWNGKMVEAEGL---FNKMPARNSVSWNTMIS 484
Query: 441 VYA 443
YA
Sbjct: 485 GYA 487
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 65/130 (50%)
Query: 56 NAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALK 115
N +I Y+ + + ++ M+ +G +P T S+ +CA +E G M H +K
Sbjct: 480 NTMISGYAENRRFGDALNYFYAMLASGHIPGEITLSSVLLACANLCSLEMGRMVHAEIVK 539
Query: 116 NGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHEL 175
G++ + + +L +MY G +D +R +F QM ++ I+W ++V G +G + L
Sbjct: 540 LGIEDNIFMGTALSDMYAKSGDLDSSRRVFYQMPEKNNITWTAMVQGLAENGFAEESISL 599
Query: 176 FDIMPERNVV 185
F+ M E +
Sbjct: 600 FEDMIENGIA 609
Score = 48.1 bits (113), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 60/260 (23%), Positives = 104/260 (40%), Gaps = 19/260 (7%)
Query: 204 LKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDL 263
L L +SG + +++LTA R + V + D ++
Sbjct: 100 LSLHAHAFRSGLTADRSVASNLLTAYAAFTRAADRDQAFRDCVAADAASSFTYDF-MVSE 158
Query: 264 YSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISP 323
+ K + A+R+F M ++++V + M+ G + ++L+ +VA
Sbjct: 159 HVKAGDIASARRLFYGMPEKSVVSYTTMVDALMKRGSVRDAVELYERCPLHSVA------ 212
Query: 324 DEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEI 383
F +I VR EL + FR+M+ ++PN C+ GA + A +
Sbjct: 213 ---FFTAMISGFVRNELHKDAFPVFRKMLTC-SVRPNVVTLICVIKACVGAGEFDLAMGV 268
Query: 384 LRKMPEDNDNMSFESIMWV--SLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNV 441
+ + N FE + V SL++L G A R+ F DM+ +D + LL+V
Sbjct: 269 VGLAVKCN---LFEKSIEVHNSLITLYLRMGDAAAAHRV---FDDMEVRDVVSWTALLDV 322
Query: 442 YAVAGQWEDVARVRELMKKR 461
YA G RV + M R
Sbjct: 323 YADLGDLYGARRVLDAMPAR 342
Score = 47.0 bits (110), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 46/237 (19%), Positives = 94/237 (39%), Gaps = 24/237 (10%)
Query: 7 IQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSNSC 66
+ A ++ G+ +N F L A G D + VF + A+++ + +
Sbjct: 533 VHAEIVKLGIE-DNIFMGTALSDMYAKSGDLDSSRRVFYQMPEKNNITWTAMVQGLAENG 591
Query: 67 VPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMN 126
++ + + MI+NG PN +TF+++ +C+ G VE+ +G+ +
Sbjct: 592 FAEESISLFEDMIENGIAPNEHTFLAILFACSHCGLVEQAIHYFETMQAHGIPPKSKHYT 651
Query: 127 SLINMYGCFGAMDCARNMFVQMSPR-DLISWNSIVSG-----------------HVRSGD 168
++++ G + A + +++S D SW+S++S H D
Sbjct: 652 CMVDVLARAGCLPEAEELLMKVSSELDTSSWSSLLSACSTYRNKEIGERAAKKLHELEKD 711
Query: 169 MSAAHELFDIMPE-----RNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDK 220
+A + L M ++ I++ G S + GCS R + F +K
Sbjct: 712 NTAGYVLLSNMYASCGKWKDAAETRILMQGASLKKDAGCSWLQLRGQYHAFFSWKEK 768
>gi|297833170|ref|XP_002884467.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297330307|gb|EFH60726.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 657
Score = 236 bits (602), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 143/474 (30%), Positives = 235/474 (49%), Gaps = 17/474 (3%)
Query: 1 MKQLLQIQAHLITSG-LFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVI 59
+ ++ QI H+I SG L N W +L+K + GS + VF + P N +I
Sbjct: 145 LSEVKQIHCHIIVSGCLSLGNYLWN-SLVKFYMELGSLGFAEKVFAIMPQPDVSSFNVMI 203
Query: 60 KAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVD 119
Y+ + + Y +M+ +G P+ YT + L C + G HG + G
Sbjct: 204 VGYAKQGFGLEALELYYKMVSDGIEPDEYTLLGLLVCCGHLSDIRLGKGVHGWIERRGPV 263
Query: 120 FE--LPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFD 177
+ L + N+L++MY A+ F + +D+ SWN++V G VR GDM AA +FD
Sbjct: 264 YSSNLILRNALLDMYFKCKESGLAKRAFDALKKKDMRSWNTMVVGFVRLGDMEAAQAVFD 323
Query: 178 IMPERNVVSWNIMISGYSKSG-NPGCSLKLFREMM-KSGFRGNDKTMASVLTACGRSARF 235
MP+R++VSWN ++ YSK G + +LF EM+ + + TM S+++ +
Sbjct: 324 QMPQRDLVSWNSLLFCYSKKGCDQRAVRELFYEMLIVEKVKPDRVTMVSLISGAANNGEL 383
Query: 236 NEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGH 295
+ GR VHG +R L+ + L +ALID+Y KC +E A VF + ++++ W +MI G
Sbjct: 384 SHGRWVHGLMIRLQLEGDAFLSSALIDMYCKCGLIERAFMVFKTATEKDVPLWTSMITGF 443
Query: 296 CIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFY 355
HG ++ ++LF + V +P+++T + V+ AC + L+ EG F M + +
Sbjct: 444 AFHGYGQQALQLFKRMQEEDV-----TPNKVTLLAVLTACSHSGLVEEGLHVFYHMKEKF 498
Query: 356 KIKPNFAHYWCMANLYAGAELTEEAEEILR-KMPEDNDNMSFESIMWVSLLSLCRFQGAV 414
P HY + +L A EEA++I++ KMP M MW S+LS CR +
Sbjct: 499 GFHPETEHYGSLVDLLCRAGRLEEAKDIVQNKMP-----MRPSQSMWGSILSACREGEDI 553
Query: 415 AMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPG 468
E + ++P+ Y L N+YA G+W + RE M+ R + + G
Sbjct: 554 ETAELALSELLKLEPEKEGGYVLLSNIYATVGRWGYSDKTREAMESRGVKKTAG 607
>gi|297744892|emb|CBI38389.3| unnamed protein product [Vitis vinifera]
Length = 614
Score = 236 bits (602), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 142/495 (28%), Positives = 241/495 (48%), Gaps = 39/495 (7%)
Query: 1 MKQLLQIQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIK 60
+ Q+L I A LI +G + F LL+ + + DY +F+ +NP + A+I
Sbjct: 52 INQVLPIHAQLIRNG-HSQDPFMVFELLRSCSKCHAIDYASRIFQYTHNPNVYLYTALID 110
Query: 61 AYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDF 120
+ +S + + Y +M+ +P++Y S+ +C + G H ALK G
Sbjct: 111 GFVSSGNYLEAIQLYSRMLHESILPDNYLMASILKACGSQLALREGREVHSRALKLGFSS 170
Query: 121 ELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMP 180
V ++ +YG G + AR +F +M P D+++
Sbjct: 171 NRLVRLRIMELYGKCGELGDARRVFEEM-PEDVVA------------------------- 204
Query: 181 ERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRS 240
++ V W MI G+ ++ +L+ FR M R N+ T+ VL+AC + GR
Sbjct: 205 -KDTVCWTAMIDGFVRNEETNRALEAFRGMQGENVRPNEFTIVCVLSACSQLGALEIGRW 263
Query: 241 VHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGK 300
VH Y + ++ N+ + ALI++YS+C ++ AQ VFD M DR+++ +N MI G ++GK
Sbjct: 264 VHSYMRKFEIELNLFVGNALINMYSRCGSIDEAQTVFDEMKDRDVITYNTMISGLSMNGK 323
Query: 301 PEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPN 360
+ I+LF +V G + P +TF+GV+ AC L+ G + F M Y+++P
Sbjct: 324 SRQAIELFRVMV-----GRRLRPTNVTFVGVLNACSHGGLVDFGFEIFHSMARDYRVEPQ 378
Query: 361 FAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERL 420
HY CM +L EEA +++R M M+ + IM +LLS C+ + + E++
Sbjct: 379 IEHYGCMVDLLGRVGRLEEAYDLIRTM-----KMTPDHIMLGTLLSACKMHKNLELGEQV 433
Query: 421 AKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLKEVVEK 480
AK D D Y L +VYA +G+W++ A+VR MK+ M + PGC +++ + +
Sbjct: 434 AKELEDRGQADSGTYVLLSHVYASSGKWKEAAQVRAKMKEAGMQKEPGCSSIEVNNEIHE 493
Query: 481 LKVGHFWRGGMKEEV 495
+G R KE +
Sbjct: 494 FLLGDL-RHPQKERI 507
Score = 52.8 bits (125), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 42/193 (21%), Positives = 82/193 (42%), Gaps = 13/193 (6%)
Query: 218 NDKTMAS-----VLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEV 272
N K++ S +++ RS N+ +H +R + + L+ SKC ++
Sbjct: 30 NPKSLKSLDQKQIISLLQRSRHINQVLPIHAQLIRNGHSQDPFMVFELLRSCSKCHAIDY 89
Query: 273 AQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVI 332
A R+F + N+ + A+I G G E I+L++ +++ SI PD ++
Sbjct: 90 ASRIFQYTHNPNVYLYTALIDGFVSSGNYLEAIQLYSRMLH-----ESILPDNYLMASIL 144
Query: 333 CACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDND 392
AC L EGR+ + + M LY +A + +MPE D
Sbjct: 145 KACGSQLALREGREVHSRALKLGFSSNRLVRLRIM-ELYGKCGELGDARRVFEEMPE--D 201
Query: 393 NMSFESIMWVSLL 405
++ +++ W +++
Sbjct: 202 VVAKDTVCWTAMI 214
>gi|296082436|emb|CBI21441.3| unnamed protein product [Vitis vinifera]
Length = 832
Score = 236 bits (602), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 135/426 (31%), Positives = 222/426 (52%), Gaps = 16/426 (3%)
Query: 43 VFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGC 102
+F ++ P F A++ YS + + D+ V Y +M G +P+ Y F +F +C +
Sbjct: 419 LFDKLSQPNVFAWTAILGFYSRNGLSDECVRTYSEMKLKGVLPDKYVFPKVFRACGQLLW 478
Query: 103 VERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSG 162
+E G H + G +F+L V NSLI+MY G + R +F +M RD++SWNS++SG
Sbjct: 479 LEVGIQVHKDVVICGCEFDLQVCNSLIDMYSKSGDVGSGRRVFDEMVERDVLSWNSMISG 538
Query: 163 HVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTM 222
+ + + A +F++M +VV+WN MI G+ +L+ F +M +SG N T+
Sbjct: 539 YCKR--IQDALNVFELMDRFDVVTWNAMILGFVDLEMGHLALECFSKMQRSGIMNNQITI 596
Query: 223 ASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMAD 282
++VL AC G+ VH Y + S I + ALI +YSKC + A +F +M
Sbjct: 597 STVLPACD----LKSGKQVHAYITKNSFSSVIPVWNALIHMYSKCGCIGTAYSIFSNMIS 652
Query: 283 RNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLT 342
R+LV WN MI G +HG + ++L + + V P+ +TF + AC + L+
Sbjct: 653 RDLVSWNTMIGGFGMHGLGQFALQLLRDMSHSDVC-----PNSVTFTSALSACSHSGLVD 707
Query: 343 EGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWV 402
EG + F M + P H+ C+ +L A A+ E+A + KMP + +W
Sbjct: 708 EGMELFHTMTRDFGFTPGMEHFSCVVDLLARADRLEDAVGFIEKMP-----LKPSKHIWS 762
Query: 403 SLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRR 462
+LL+ CR Q V++ + A+ ++P+ Y L N+YA AG+W+D VR+LM+ R
Sbjct: 763 ALLAACRAQQNVSVAKLAAEQLFQLEPEHAGNYVTLSNIYARAGRWDDAVAVRKLMEDRG 822
Query: 463 MGRMPG 468
+ + G
Sbjct: 823 LVKPSG 828
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 41/127 (32%), Positives = 67/127 (52%)
Query: 170 SAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTAC 229
S+A LFD + + NV +W ++ YS++G ++ + EM G + V AC
Sbjct: 414 SSAQALFDKLSQPNVFAWTAILGFYSRNGLSDECVRTYSEMKLKGVLPDKYVFPKVFRAC 473
Query: 230 GRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWN 289
G+ G VH V + ++ + +LID+YSK V +RVFD M +R+++ WN
Sbjct: 474 GQLLWLEVGIQVHKDVVICGCEFDLQVCNSLIDMYSKSGDVGSGRRVFDEMVERDVLSWN 533
Query: 290 AMILGHC 296
+MI G+C
Sbjct: 534 SMISGYC 540
>gi|15227619|ref|NP_180537.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75100656|sp|O82380.1|PP175_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At2g29760, chloroplastic; Flags: Precursor
gi|3582328|gb|AAC35225.1| hypothetical protein [Arabidopsis thaliana]
gi|330253207|gb|AEC08301.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 738
Score = 236 bits (602), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 123/451 (27%), Positives = 230/451 (50%), Gaps = 11/451 (2%)
Query: 35 GSPDYTVLVFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLF 94
G D VF I N++I + PD+ + + +M + T V +
Sbjct: 180 GDLDSACKVFTTIKEKDVVSWNSMINGFVQKGSPDKALELFKKMESEDVKASHVTMVGVL 239
Query: 95 GSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLI 154
+CAK +E G +N V+ L + N++++MY G+++ A+ +F M +D +
Sbjct: 240 SACAKIRNLEFGRQVCSYIEENRVNVNLTLANAMLDMYTKCGSIEDAKRLFDAMEEKDNV 299
Query: 155 SWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREM-MKS 213
+W +++ G+ S D AA E+ + MP++++V+WN +IS Y ++G P +L +F E+ ++
Sbjct: 300 TWTTMLDGYAISEDYEAAREVLNSMPQKDIVAWNALISAYEQNGKPNEALIVFHELQLQK 359
Query: 214 GFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVA 273
+ N T+ S L+AC + GR +H Y + ++ N + +ALI +YSKC +E +
Sbjct: 360 NMKLNQITLVSTLSACAQVGALELGRWIHSYIKKHGIRMNFHVTSALIHMYSKCGDLEKS 419
Query: 274 QRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVIC 333
+ VF+S+ R++ W+AMI G +HG E + +F + V P+ +TF V C
Sbjct: 420 REVFNSVEKRDVFVWSAMIGGLAMHGCGNEAVDMFYKMQEANV-----KPNGVTFTNVFC 474
Query: 334 ACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDN 393
AC L+ E F QM Y I P HY C+ ++ + E+A + + MP
Sbjct: 475 ACSHTGLVDEAESLFHQMESNYGIVPEEKHYACIVDVLGRSGYLEKAVKFIEAMP----- 529
Query: 394 MSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVAR 453
+ + +W +LL C+ + + E ++++P++ + L N+YA G+WE+V+
Sbjct: 530 IPPSTSVWGALLGACKIHANLNLAEMACTRLLELEPRNDGAHVLLSNIYAKLGKWENVSE 589
Query: 454 VRELMKKRRMGRMPGCRLVDLKEVVEKLKVG 484
+R+ M+ + + PGC +++ ++ + G
Sbjct: 590 LRKHMRVTGLKKEPGCSSIEIDGMIHEFLSG 620
Score = 160 bits (404), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 110/414 (26%), Positives = 195/414 (47%), Gaps = 63/414 (15%)
Query: 1 MKQLLQIQAHLITSGLFFNNSFWTINLLKHSA--DFGSPDYTVLVFKCINNPGTFCVNAV 58
++QL Q H+I +G F ++ + L +A F S +Y VF I P +F N +
Sbjct: 43 LRQLKQTHGHMIRTGTF-SDPYSASKLFAMAALSSFASLEYARKVFDEIPKPNSFAWNTL 101
Query: 59 IKAYSNSCVPDQGVVFYLQMI-KNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNG 117
I+AY++ P + +L M+ ++ PN YTF L + A+ + G HG+A+K+
Sbjct: 102 IRAYASGPDPVLSIWAFLDMVSESQCYPNKYTFPFLIKAAAEVSSLSLGQSLHGMAVKSA 161
Query: 118 VDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFD 177
V ++ V NSLI+ Y C GD+ +A ++F
Sbjct: 162 VGSDVFVANSLIHCY-----FSC--------------------------GDLDSACKVFT 190
Query: 178 IMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNE 237
+ E++VVSWN MI+G+ + G+P +L+LF++M + + TM VL+AC +
Sbjct: 191 TIKEKDVVSWNSMINGFVQKGSPDKALELFKKMESEDVKASHVTMVGVLSACAKIRNLEF 250
Query: 238 GRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCI 297
GR V Y + N+ L A++D+Y+KC +E A+R+FD+M +++ V W M+ G+ I
Sbjct: 251 GRQVCSYIEENRVNVNLTLANAMLDMYTKCGSIEDAKRLFDAMEEKDNVTWTTMLDGYAI 310
Query: 298 -----------HGKPEEGIKLFTALVNGTVAGG----------------SISPDEITFIG 330
+ P++ I + AL++ G ++ ++IT +
Sbjct: 311 SEDYEAAREVLNSMPQKDIVAWNALISAYEQNGKPNEALIVFHELQLQKNMKLNQITLVS 370
Query: 331 VICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEIL 384
+ AC + L GR + I + I+ NF + ++Y+ E++ E+
Sbjct: 371 TLSACAQVGALELGR-WIHSYIKKHGIRMNFHVTSALIHMYSKCGDLEKSREVF 423
Score = 99.8 bits (247), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 72/300 (24%), Positives = 144/300 (48%), Gaps = 19/300 (6%)
Query: 167 GDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMM-KSGFRGNDKTMASV 225
+ A ++FD +P+ N +WN +I Y+ +P S+ F +M+ +S N T +
Sbjct: 78 ASLEYARKVFDEIPKPNSFAWNTLIRAYASGPDPVLSIWAFLDMVSESQCYPNKYTFPFL 137
Query: 226 LTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNL 285
+ A + + G+S+HG V++++ ++ + +LI Y C ++ A +VF ++ ++++
Sbjct: 138 IKAAAEVSSLSLGQSLHGMAVKSAVGSDVFVANSLIHCYFSCGDLDSACKVFTTIKEKDV 197
Query: 286 VCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGR 345
V WN+MI G G P++ ++LF + + V +T +GV+ AC + L GR
Sbjct: 198 VSWNSMINGFVQKGSPDKALELFKKMESEDVKAS-----HVTMVGVLSACAKIRNLEFGR 252
Query: 346 KYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLL 405
+ I+ ++ N M ++Y E+A+ + M E+ DN + W ++L
Sbjct: 253 QVC-SYIEENRVNVNLTLANAMLDMYTKCGSIEDAKRLFDAM-EEKDN-----VTWTTML 305
Query: 406 SLCRFQGAVAMVERLAKSFVDMDPQ-DFSRYQFLLNVYAVAGQWEDVARV-RELMKKRRM 463
A++ A+ ++ PQ D + L++ Y G+ + V EL ++ M
Sbjct: 306 D----GYAISEDYEAAREVLNSMPQKDIVAWNALISAYEQNGKPNEALIVFHELQLQKNM 361
>gi|38345134|emb|CAE02724.2| OSJNBa0055H05.11 [Oryza sativa Japonica Group]
gi|215697200|dbj|BAG91194.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 408
Score = 236 bits (602), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 122/407 (29%), Positives = 219/407 (53%), Gaps = 10/407 (2%)
Query: 78 MIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGA 137
M ++ +P+ ++ +CA T + G H L + + V +L+NMY
Sbjct: 1 MKRSRVVPDQVIIATVLSTCAHTRNLRFGKAIHSYMLVSDTLIDAQVSCALMNMYASCAD 60
Query: 138 MDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKS 197
M+ A ++ ++S ++++ ++V G+ ++G + AH +F+ MP ++VVSW+ MI+GY++S
Sbjct: 61 MEMAEKLYNRVSEKEIVLSTTMVYGYAKNGKVEIAHSIFNGMPAKDVVSWSAMIAGYAES 120
Query: 198 GNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILD 257
P +L LF +M +SG + ++ TM SV++AC + R +H + S+ + +
Sbjct: 121 SKPMEALNLFHDMQRSGVKPDEITMLSVISACANVGALEKARCIHSFVENHSMCKILPIG 180
Query: 258 TALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVA 317
ALID++SKC + +A VF++M +N+V W ++I +HG + LF +
Sbjct: 181 NALIDMFSKCGSLTLALDVFNAMPQKNVVTWTSIITASAMHGDGRSALTLFE-----NMK 235
Query: 318 GGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELT 377
I P+ +TF+G++ AC A L+ EGR F+ M+ Y+I+P HY CM +L A+L
Sbjct: 236 SEGIQPNGVTFLGLLYACCHAGLVEEGRLLFKIMVQQYRIEPMHEHYGCMVDLLGRAKLL 295
Query: 378 EEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQF 437
+A ++++ M ++ ++W SLL+ CR G + + AK +++DP
Sbjct: 296 GQAADLIQSM-----HLRPNVVIWGSLLAACRMHGDLELGTFAAKKILELDPNHGGAQVL 350
Query: 438 LLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLKEVVEKLKVG 484
L N+YA G W DV VR +M+ + + GC ++L V + VG
Sbjct: 351 LSNIYAEYGNWNDVKEVRGVMEVQGTWKKKGCSWMELNGSVHQFAVG 397
Score = 81.6 bits (200), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 59/251 (23%), Positives = 109/251 (43%), Gaps = 33/251 (13%)
Query: 56 NAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALK 115
+A+I Y+ S P + + + M ++G P+ T +S+ +CA G +E+ H
Sbjct: 111 SAMIAGYAESSKPMEALNLFHDMQRSGVKPDEITMLSVISACANVGALEKARCIHSFVEN 170
Query: 116 NGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHEL 175
+ + LP+ N+LI+M+ G++ A ++F M +++++W SI++ GD +A
Sbjct: 171 HSMCKILPIGNALIDMFSKCGSLTLALDVFNAMPQKNVVTWTSIITASAMHGDGRSA--- 227
Query: 176 FDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARF 235
L LF M G + N T +L AC +
Sbjct: 228 ----------------------------LTLFENMKSEGIQPNGVTFLGLLYACCHAGLV 259
Query: 236 NEGRSVHGYTVRT-SLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADR-NLVCWNAMIL 293
EGR + V+ ++P ++DL + + + A + SM R N+V W +++
Sbjct: 260 EEGRLLFKIMVQQYRIEPMHEHYGCMVDLLGRAKLLGQAADLIQSMHLRPNVVIWGSLLA 319
Query: 294 GHCIHGKPEEG 304
+HG E G
Sbjct: 320 ACRMHGDLELG 330
>gi|255572939|ref|XP_002527400.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223533210|gb|EEF34966.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 621
Score = 236 bits (602), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 131/460 (28%), Positives = 237/460 (51%), Gaps = 20/460 (4%)
Query: 50 PGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMC 109
P ++I +Y+ S ++ + + M G + + CA G R +
Sbjct: 141 PNLVTWTSLISSYARSGWHEEAMELFGLMRMKGVEVSGEALAVVISICADLGAFVRAKII 200
Query: 110 HGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDM 169
H A+K G + V ++LI +YG G ++ A N+F++M + L SWN++++ H +G
Sbjct: 201 HEYAVKGGFEEYSFVKSALICVYGKHGDVNGAWNLFLEMKNKSLASWNALITSHAEAGLC 260
Query: 170 SAAHELFDIMPER--------NVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKT 221
A E+F + NVVSW+ +I G++ G +L+LFR M + N T
Sbjct: 261 DEALEIFSQLERSGDCPRLRPNVVSWSAIIDGFASKGREKEALELFRRMQHAKILANAVT 320
Query: 222 MASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMA 281
+++VL+ C A + GR +HG+ VR + NI++ L+++Y+KC ++ +F+
Sbjct: 321 ISTVLSLCAELAALHLGREIHGHVVRAVMVNNILVGNGLVNMYAKCGCLKEGHMIFEKTE 380
Query: 282 DRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELL 341
++L+ WN+MI G+ +HG ++ F ++ PD +TF+ V+ +C + L+
Sbjct: 381 RKDLISWNSMITGYGMHGLGMNALETFDQMIK-----LGFKPDGVTFVAVLSSCSHSGLV 435
Query: 342 TEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMW 401
EGR+ F QM+ Y+I+P HY CM +L A L EA EI++ MP ++ + +W
Sbjct: 436 HEGRRLFDQMLKKYRIEPQMEHYACMVDLLGRAGLLREASEIVKNMP-----VAPNACVW 490
Query: 402 VSLLSLCRFQGAVAMVERLAKSFVDMDPQDFS-RYQFLLNVYAVAGQWEDVARVRELMKK 460
+LL+ CR + E A ++ ++ + Y L N+YA +G+WED ARVR K
Sbjct: 491 GALLNSCRMHNNTEIAEETASHLFNLSHRETTGTYMLLSNIYAASGRWEDSARVRTSAKT 550
Query: 461 RRMGRMPGCRLVDLKEVVEKLKVGHFWRGGMKEEVNKMME 500
+ + + PG + +++ V G+ + G E++ +++E
Sbjct: 551 KGLKKNPGQSWIKVEKNVYTFSAGNNMQRGF-EQIFEILE 589
Score = 128 bits (321), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 78/239 (32%), Positives = 124/239 (51%), Gaps = 4/239 (1%)
Query: 77 QMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFG 136
+M K G + + +TF + +CA G G HG L+ G L V N LI MY G
Sbjct: 32 RMRKIGTLGDGFTFPLVIRACAYMGSFILGKTIHGHVLEMGFQSHLHVGNELIGMYAKLG 91
Query: 137 AMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMP----ERNVVSWNIMIS 192
M AR++F +MS R ISWN++VS + + D + A E+F M E N+V+W +IS
Sbjct: 92 RMRDARHLFDRMSVRSYISWNTMVSAYAFNYDCNGALEIFQRMESEGMEPNLVTWTSLIS 151
Query: 193 GYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKP 252
Y++SG +++LF M G + + +A V++ C F + +H Y V+ +
Sbjct: 152 SYARSGWHEEAMELFGLMRMKGVEVSGEALAVVISICADLGAFVRAKIIHEYAVKGGFEE 211
Query: 253 NIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTAL 311
+ +ALI +Y K V A +F M +++L WNA+I H G +E +++F+ L
Sbjct: 212 YSFVKSALICVYGKHGDVNGAWNLFLEMKNKSLASWNALITSHAEAGLCDEALEIFSQL 270
Score = 58.5 bits (140), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 33/144 (22%), Positives = 68/144 (47%), Gaps = 5/144 (3%)
Query: 208 REMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKC 267
R M K G G+ T V+ AC F G+++HG+ + + ++ + LI +Y+K
Sbjct: 31 RRMRKIGTLGDGFTFPLVIRACAYMGSFILGKTIHGHVLEMGFQSHLHVGNELIGMYAKL 90
Query: 268 QKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEIT 327
++ A+ +FD M+ R+ + WN M+ + + +++F + + P+ +T
Sbjct: 91 GRMRDARHLFDRMSVRSYISWNTMVSAYAFNYDCNGALEIFQRM-----ESEGMEPNLVT 145
Query: 328 FIGVICACVRAELLTEGRKYFRQM 351
+ +I + R+ E + F M
Sbjct: 146 WTSLISSYARSGWHEEAMELFGLM 169
Score = 42.0 bits (97), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 46/223 (20%), Positives = 96/223 (43%), Gaps = 15/223 (6%)
Query: 6 QIQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSNS 65
+I H++ + + NN L+ A G ++F+ N++I Y
Sbjct: 339 EIHGHVVRA-VMVNNILVGNGLVNMYAKCGCLKEGHMIFEKTERKDLISWNSMITGYGMH 397
Query: 66 CVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKN-GVDFELPV 124
+ + + QMIK GF P+ TFV++ SC+ +G V G LK ++ ++
Sbjct: 398 GLGMNALETFDQMIKLGFKPDGVTFVAVLSSCSHSGLVHEGRRLFDQMLKKYRIEPQMEH 457
Query: 125 MNSLINMYGCFG----AMDCARNMFVQMSPRDLISWNSIVSG-----HVRSGDMSAAHEL 175
++++ G G A + +NM V +P + W ++++ + + +A+H L
Sbjct: 458 YACMVDLLGRAGLLREASEIVKNMPV--APNACV-WGALLNSCRMHNNTEIAEETASH-L 513
Query: 176 FDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGN 218
F++ ++ ++ + Y+ SG S ++ G + N
Sbjct: 514 FNLSHRETTGTYMLLSNIYAASGRWEDSARVRTSAKTKGLKKN 556
>gi|347954498|gb|AEP33749.1| chloroplast biogenesis 19, partial [Crucihimalaya wallichii]
Length = 491
Score = 236 bits (601), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 136/414 (32%), Positives = 212/414 (51%), Gaps = 14/414 (3%)
Query: 75 YLQMIKNGFMPNSYTFVSLFGSCAK--TGCVERGGMCHGLALKNGVD-FELPVMNSLINM 131
+ M +G PN TF++L C +G + HG A K G+D + V ++I M
Sbjct: 50 FSDMRLSGVEPNHITFIALLSGCGDFPSGSETLSNLLHGYACKLGLDRTHVMVGTAIIGM 109
Query: 132 YGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMI 191
Y G + AR +F M + ++WN+++ G++RSG + A ++FD MPER+++SW MI
Sbjct: 110 YSKRGHVKKARLVFDYMEDINSVTWNTMIDGYMRSGQVDNAVKMFDKMPERDLISWTAMI 169
Query: 192 SGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLK 251
+G+ K G +L FREM SG R + + + L AC + G VH Y + K
Sbjct: 170 NGFVKKGFHEEALVWFREMQISGVRPDYVAIIAALNACTNLGALSFGLWVHRYVMNQDFK 229
Query: 252 PNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTAL 311
N+ + +LIDLY +C VE A+ VFD M R +V WN++I+G +G E + F +
Sbjct: 230 NNVRVSNSLIDLYCRCGCVEFAREVFDKMEKRTVVSWNSVIVGFAANGNAHESLVYFRKM 289
Query: 312 VNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLY 371
PD +TF G + AC L+ EG +YF+ M Y I P HY C+ +LY
Sbjct: 290 QE-----EGFKPDAVTFTGALTACSHVGLVEEGLRYFQTMKRDYGISPRIEHYGCLVDLY 344
Query: 372 AGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQG-AVAMVERLAKSFVDMDPQ 430
+ A E+A +++ MP M ++ SLL+ CR G + ERL K D++ +
Sbjct: 345 SRAGRLEDALKVIESMP-----MKPNEVVIGSLLAACRTHGNNTVLAERLMKHLSDLNVK 399
Query: 431 DFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLKEVVEKLKVG 484
S Y L N+YA G+WE +++R MK + + PG +++ + G
Sbjct: 400 SHSNYVILSNMYAADGKWEGASQMRRKMKGLGLKKQPGFSSIEIDDCTHVFMAG 453
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 61/247 (24%), Positives = 102/247 (41%), Gaps = 32/247 (12%)
Query: 35 GSPDYTVLVFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLF 94
G D V +F + A+I + ++ +V++ +M +G P+ ++
Sbjct: 145 GQVDNAVKMFDKMPERDLISWTAMINGFVKKGFHEEALVWFREMQISGVRPDYVAIIAAL 204
Query: 95 GSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLI 154
+C G + G H + + V NSLI++Y G ++ AR +F +M R ++
Sbjct: 205 NACTNLGALSFGLWVHRYVMNQDFKNNVRVSNSLIDLYCRCGCVEFAREVFDKMEKRTVV 264
Query: 155 SWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSG 214
SWNS+ I G++ +GN SL FR+M + G
Sbjct: 265 SWNSV-------------------------------IVGFAANGNAHESLVYFRKMQEEG 293
Query: 215 FRGNDKTMASVLTACGRSARFNEG-RSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVA 273
F+ + T LTAC EG R + P I L+DLYS+ ++E A
Sbjct: 294 FKPDAVTFTGALTACSHVGLVEEGLRYFQTMKRDYGISPRIEHYGCLVDLYSRAGRLEDA 353
Query: 274 QRVFDSM 280
+V +SM
Sbjct: 354 LKVIESM 360
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 90/373 (24%), Positives = 147/373 (39%), Gaps = 94/373 (25%)
Query: 147 QMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKL 206
Q + +SW S ++ R+G ++ A K
Sbjct: 21 QSTSETTVSWTSRITLLTRNGRLAEA-------------------------------AKX 49
Query: 207 FREMMKSGFRGNDKTMASVLTACGRSARFNEGRS--VHGYTVRTSL-KPNIILDTALIDL 263
F +M SG N T ++L+ CG +E S +HGY + L + ++++ TA+I +
Sbjct: 50 FSDMRLSGVEPNHITFIALLSGCGDFPSGSETLSNLLHGYACKLGLDRTHVMVGTAIIGM 109
Query: 264 YSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLF-----------TALV 312
YSK V+ A+ VFD M D N V WN MI G+ G+ + +K+F TA++
Sbjct: 110 YSKRGHVKKARLVFDYMEDINSVTWNTMIDGYMRSGQVDNAVKMFDKMPERDLISWTAMI 169
Query: 313 NGTVAGG---------------SISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKI 357
NG V G + PD + I + AC L+ G R +++
Sbjct: 170 NGFVKKGFHEEALVWFREMQISGVRPDYVAIIAALNACTNLGALSFGLWVHRYVMN-QDF 228
Query: 358 KPNFAHYWCMANLYAGAELTEEAEEILRKMPEDN-------------DNMSFESIMWVSL 404
K N + +LY E A E+ KM + + + ES+++
Sbjct: 229 KNNVRVSNSLIDLYCRCGCVEFAREVFDKMEKRTVVSWNSVIVGFAANGNAHESLVYFRK 288
Query: 405 L-------SLCRFQGA------VAMVERLAKSFVDMDPQDF------SRYQFLLNVYAVA 445
+ F GA V +VE + F M +D+ Y L+++Y+ A
Sbjct: 289 MQEEGFKPDAVTFTGALTACSHVGLVEEGLRYFQTM-KRDYGISPRIEHYGCLVDLYSRA 347
Query: 446 GQWEDVARVRELM 458
G+ ED +V E M
Sbjct: 348 GRLEDALKVIESM 360
Score = 42.7 bits (99), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 40/206 (19%), Positives = 88/206 (42%), Gaps = 6/206 (2%)
Query: 17 FFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYL 76
F NN + +L+ G ++ VF + N+VI ++ + + +V++
Sbjct: 228 FKNNVRVSNSLIDLYCRCGCVEFAREVFDKMEKRTVVSWNSVIVGFAANGNAHESLVYFR 287
Query: 77 QMIKNGFMPNSYTFVSLFGSCAKTGCVERG-GMCHGLALKNGVDFELPVMNSLINMYGCF 135
+M + GF P++ TF +C+ G VE G + G+ + L+++Y
Sbjct: 288 KMQEEGFKPDAVTFTGALTACSHVGLVEEGLRYFQTMKRDYGISPRIEHYGCLVDLYSRA 347
Query: 136 GAMDCARNMF--VQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVS---WNIM 190
G ++ A + + M P +++ + + + + A L + + NV S + I+
Sbjct: 348 GRLEDALKVIESMPMKPNEVVIGSLLAACRTHGNNTVLAERLMKHLSDLNVKSHSNYVIL 407
Query: 191 ISGYSKSGNPGCSLKLFREMMKSGFR 216
+ Y+ G + ++ R+M G +
Sbjct: 408 SNMYAADGKWEGASQMRRKMKGLGLK 433
>gi|224077718|ref|XP_002305377.1| predicted protein [Populus trichocarpa]
gi|222848341|gb|EEE85888.1| predicted protein [Populus trichocarpa]
Length = 427
Score = 236 bits (601), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 119/358 (33%), Positives = 200/358 (55%), Gaps = 10/358 (2%)
Query: 126 NSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVV 185
N++++ Y G M+ A +F M R+++SW+++VSG+ ++GDM A LFD MP +N+V
Sbjct: 47 NTILDGYVKAGEMNKAFGLFESMPERNVVSWSTMVSGYCKAGDMEMARMLFDRMPVKNLV 106
Query: 186 SWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYT 245
SW I++SGY+ G +++ F +M ++G + +D T+ S+L +C S G+ VH
Sbjct: 107 SWTIIVSGYAVKGLAKDAIRSFEQMEEAGLKPDDGTVISILASCAESGLLGLGKRVHTSI 166
Query: 246 VRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGI 305
R K ++ + AL+D+Y+KC +V+ A VF+ M+ ++LV WN M+ G +HG E+ +
Sbjct: 167 ERIRYKCSVNVSNALVDMYAKCGQVDRALSVFNGMSKKDLVSWNCMLQGLAMHGHGEKAL 226
Query: 306 KLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYW 365
+LF+ + PD++T + V+CACV A + EG +YF M Y I P+ HY
Sbjct: 227 QLFSIMRQ-----EGFRPDKVTLVAVLCACVHAGFVDEGIRYFNNMERDYGIVPHIEHYG 281
Query: 366 CMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFV 425
CM +L +EA +++ MP + + ++W +LL CR AV + E +
Sbjct: 282 CMVDLLGRGGRLKEAYRLVQSMPVEPN-----VVIWGTLLGACRMHNAVGLAEEVLDCLF 336
Query: 426 DMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLKEVVEKLKV 483
++P D Y L N++A AG W VA VR MK + + G +++ + V + V
Sbjct: 337 KLEPSDPGNYSLLSNIFASAGDWSSVANVRLQMKNFGIQKPSGASSIEVDDEVHEFTV 394
Score = 80.1 bits (196), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 61/241 (25%), Positives = 106/241 (43%), Gaps = 34/241 (14%)
Query: 58 VIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNG 117
++ Y+ + + + QM + G P+ T +S+ SCA++G + G H +
Sbjct: 111 IVSGYAVKGLAKDAIRSFEQMEEAGLKPDDGTVISILASCAESGLLGLGKRVHTSIERIR 170
Query: 118 VDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFD 177
+ V N+L++MY G +D A ++F MS +DL+SWN ++ G G A +LF
Sbjct: 171 YKCSVNVSNALVDMYAKCGQVDRALSVFNGMSKKDLVSWNCMLQGLAMHGHGEKALQLFS 230
Query: 178 IMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNE 237
IM + GFR + T+ +VL AC + +E
Sbjct: 231 IMRQE-------------------------------GFRPDKVTLVAVLCACVHAGFVDE 259
Query: 238 G-RSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSM-ADRNLVCWNAMILGH 295
G R + + P+I ++DL + +++ A R+ SM + N+V W + LG
Sbjct: 260 GIRYFNNMERDYGIVPHIEHYGCMVDLLGRGGRLKEAYRLVQSMPVEPNVVIWGTL-LGA 318
Query: 296 C 296
C
Sbjct: 319 C 319
>gi|145335149|ref|NP_172066.3| protein pigment defective 247 [Arabidopsis thaliana]
gi|75191933|sp|Q9MA50.1|PPR13_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g05750, chloroplastic; AltName: Full=Protein PIGMENT
DEFECTIVE 247; Flags: Precursor
gi|6850304|gb|AAF29381.1|AC009999_1 Contains similarity to a hypothetical protein from Arabidopsis
thaliana gb|AC007109.6, and contains two DUF17 PF|01535
domains [Arabidopsis thaliana]
gi|62320576|dbj|BAD95203.1| hypothetical protein [Arabidopsis thaliana]
gi|332189766|gb|AEE27887.1| protein pigment defective 247 [Arabidopsis thaliana]
Length = 500
Score = 236 bits (601), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 134/414 (32%), Positives = 216/414 (52%), Gaps = 14/414 (3%)
Query: 75 YLQMIKNGFMPNSYTFVSLFGSCAK--TGCVERGGMCHGLALKNGVDF-ELPVMNSLINM 131
+ M G PN TF++L C +G G + HG A K G+D + V ++I M
Sbjct: 59 FSDMTLAGVEPNHITFIALLSGCGDFTSGSEALGDLLHGYACKLGLDRNHVMVGTAIIGM 118
Query: 132 YGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMI 191
Y G AR +F M ++ ++WN+++ G++RSG + A ++FD MPER+++SW MI
Sbjct: 119 YSKRGRFKKARLVFDYMEDKNSVTWNTMIDGYMRSGQVDNAAKMFDKMPERDLISWTAMI 178
Query: 192 SGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLK 251
+G+ K G +L FREM SG + + + + L AC + G VH Y + K
Sbjct: 179 NGFVKKGYQEEALLWFREMQISGVKPDYVAIIAALNACTNLGALSFGLWVHRYVLSQDFK 238
Query: 252 PNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTAL 311
N+ + +LIDLY +C VE A++VF +M R +V WN++I+G +G E + F +
Sbjct: 239 NNVRVSNSLIDLYCRCGCVEFARQVFYNMEKRTVVSWNSVIVGFAANGNAHESLVYFRKM 298
Query: 312 VNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLY 371
PD +TF G + AC L+ EG +YF+ M Y+I P HY C+ +LY
Sbjct: 299 QE-----KGFKPDAVTFTGALTACSHVGLVEEGLRYFQIMKCDYRISPRIEHYGCLVDLY 353
Query: 372 AGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQG-AVAMVERLAKSFVDMDPQ 430
+ A E+A ++++ MP M ++ SLL+ C G + + ERL K D++ +
Sbjct: 354 SRAGRLEDALKLVQSMP-----MKPNEVVIGSLLAACSNHGNNIVLAERLMKHLTDLNVK 408
Query: 431 DFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLKEVVEKLKVG 484
S Y L N+YA G+WE +++R MK + + PG +++ + + G
Sbjct: 409 SHSNYVILSNMYAADGKWEGASKMRRKMKGLGLKKQPGFSSIEIDDCMHVFMAG 462
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 56/225 (24%), Positives = 94/225 (41%), Gaps = 32/225 (14%)
Query: 57 AVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKN 116
A+I + ++ ++++ +M +G P+ ++ +C G + G H L
Sbjct: 176 AMINGFVKKGYQEEALLWFREMQISGVKPDYVAIIAALNACTNLGALSFGLWVHRYVLSQ 235
Query: 117 GVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELF 176
+ V NSLI++Y G ++ AR +F M R ++SWNS+
Sbjct: 236 DFKNNVRVSNSLIDLYCRCGCVEFARQVFYNMEKRTVVSWNSV----------------- 278
Query: 177 DIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFN 236
I G++ +GN SL FR+M + GF+ + T LTAC
Sbjct: 279 --------------IVGFAANGNAHESLVYFRKMQEKGFKPDAVTFTGALTACSHVGLVE 324
Query: 237 EG-RSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSM 280
EG R + P I L+DLYS+ ++E A ++ SM
Sbjct: 325 EGLRYFQIMKCDYRISPRIEHYGCLVDLYSRAGRLEDALKLVQSM 369
Score = 38.9 bits (89), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 41/211 (19%), Positives = 90/211 (42%), Gaps = 6/211 (2%)
Query: 12 ITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSNSCVPDQG 71
+ S F NN + +L+ G ++ VF + N+VI ++ + +
Sbjct: 232 VLSQDFKNNVRVSNSLIDLYCRCGCVEFARQVFYNMEKRTVVSWNSVIVGFAANGNAHES 291
Query: 72 VVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERG-GMCHGLALKNGVDFELPVMNSLIN 130
+V++ +M + GF P++ TF +C+ G VE G + + + L++
Sbjct: 292 LVYFRKMQEKGFKPDAVTFTGALTACSHVGLVEEGLRYFQIMKCDYRISPRIEHYGCLVD 351
Query: 131 MYGCFGAMDCARNMF--VQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVS-- 186
+Y G ++ A + + M P +++ + + + ++ A L + + NV S
Sbjct: 352 LYSRAGRLEDALKLVQSMPMKPNEVVIGSLLAACSNHGNNIVLAERLMKHLTDLNVKSHS 411
Query: 187 -WNIMISGYSKSGNPGCSLKLFREMMKSGFR 216
+ I+ + Y+ G + K+ R+M G +
Sbjct: 412 NYVILSNMYAADGKWEGASKMRRKMKGLGLK 442
>gi|357479991|ref|XP_003610281.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355511336|gb|AES92478.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 783
Score = 236 bits (601), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 128/440 (29%), Positives = 224/440 (50%), Gaps = 41/440 (9%)
Query: 35 GSPDYTVLVFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLF 94
G + L+F+ IN P NA+I ++ + + V + +++ +G +S T V L
Sbjct: 258 GDVNTARLLFRRINRPDLIAYNAMISGFTANGGTECSVKLFRELLFSGERVSSSTIVGLI 317
Query: 95 GSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLI 154
+ G + HG +K+G+ V + +Y +D AR+
Sbjct: 318 PLHSPFGHLHLACSIHGFCVKSGIILNPTVSTAFTAIYNKLNEIDLARH----------- 366
Query: 155 SWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSG 214
LFD PE+ VV+WN MISGY+++G+ ++ LF+EMMK+
Sbjct: 367 --------------------LFDESPEKTVVAWNAMISGYTQNGSTETAISLFKEMMKTE 406
Query: 215 FRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQ 274
F N T+ ++L+AC + + G+ VH +L+PNI + TAL+D+Y+KC + A
Sbjct: 407 FTPNAVTITTILSACAQLGSLSFGKWVHHLIKSENLEPNIYVSTALVDMYAKCGNISEAW 466
Query: 275 RVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICA 334
++FDSM+++N V WN MI G+ +HG E +KL+ +++ +P +TF+ V+ A
Sbjct: 467 QLFDSMSEKNTVTWNTMIFGYGLHGYGHEALKLYNEMLH-----LGYNPSAVTFLSVLYA 521
Query: 335 CVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNM 394
C A L+ EG + F M++ Y+I+P HY CM ++ + E+A E ++KMP +
Sbjct: 522 CSHAGLVGEGEEIFHNMVNKYRIEPLIEHYACMVDILGRSGQLEKALEFIKKMPVEPG-- 579
Query: 395 SFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARV 454
+W +LL C + ++ ++DP Y L N+Y+V + A +
Sbjct: 580 ---PAVWGTLLGACMIHKDTDIARLASERLFELDPGSVGYYVLLSNIYSVERNFPKAASI 636
Query: 455 RELMKKRRMGRMPGCRLVDL 474
R+++KKR++ + PGC L+++
Sbjct: 637 RQVVKKRKLAKSPGCTLIEV 656
Score = 135 bits (341), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 117/499 (23%), Positives = 215/499 (43%), Gaps = 76/499 (15%)
Query: 2 KQLLQIQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKA 61
K L+ + AH I G + +N F L+ F Y VF + T N +I
Sbjct: 125 KHLMLLHAHSIIDG-YGSNVFVGSALVDLYCKFSRVVYARKVFDGMPERDTVLWNTMING 183
Query: 62 YSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFE 121
+C D + + +M+ +G +S T ++ + A+ ++ G LALK G F
Sbjct: 184 LVKNCCFDDSIQLFREMVADGVRVDSSTVTAVLPAAAELQELKVGMGIQCLALKIGFGFC 243
Query: 122 LPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPE 181
V+ LI++Y + GD++ A LF +
Sbjct: 244 DYVLTGLISLYS-------------------------------KCGDVNTARLLFRRINR 272
Query: 182 RNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSV 241
+++++N MISG++ +G CS+KLFRE++ SG R + T+ ++ + S+
Sbjct: 273 PDLIAYNAMISGFTANGGTECSVKLFRELLFSGERVSSSTIVGLIPLHSPFGHLHLACSI 332
Query: 242 HGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKP 301
HG+ V++ + N + TA +Y+K ++++A+ +FD ++ +V WNAMI G+ +G
Sbjct: 333 HGFCVKSGIILNPTVSTAFTAIYNKLNEIDLARHLFDESPEKTVVAWNAMISGYTQNGST 392
Query: 302 EEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNF 361
E I LF ++ +P+ +T ++ AC + L+ G K+ +I ++PN
Sbjct: 393 ETAISLFKEMMK-----TEFTPNAVTITTILSACAQLGSLSFG-KWVHHLIKSENLEPNI 446
Query: 362 AHYWCMANLYAGAELTEEAEEILRKMPEDN----DNMSF--------------------- 396
+ ++YA EA ++ M E N + M F
Sbjct: 447 YVSTALVDMYAKCGNISEAWQLFDSMSEKNTVTWNTMIFGYGLHGYGHEALKLYNEMLHL 506
Query: 397 ----ESIMWVSLLSLCRFQGAVAMVERLAKSFVD---MDPQDFSRYQFLLNVYAVAGQWE 449
++ ++S+L C G V E + + V+ ++P Y ++++ +GQ E
Sbjct: 507 GYNPSAVTFLSVLYACSHAGLVGEGEEIFHNMVNKYRIEPL-IEHYACMVDILGRSGQLE 565
Query: 450 DVARVRELMKKRRMGRMPG 468
+ E +KK M PG
Sbjct: 566 ---KALEFIKK--MPVEPG 579
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 54/220 (24%), Positives = 98/220 (44%), Gaps = 10/220 (4%)
Query: 127 SLINMYGCFGAMDCARNMFVQMSPR-DLISWNSIVSGHVRSGDMSAAHELFDIMPERNVV 185
SLIN F + F+ R DL + + A LF +P+ ++
Sbjct: 17 SLINKASTFPHLAQTHAQFILNGYRFDLATLTKLTQKLFDFSATRHARALFFSVPKPDIF 76
Query: 186 SWNIMISGYSKSGNPGCSLKLFREMMK-SGFRGNDKTMASVLTACGRSARFNEGRSVHGY 244
+N+++ G+S + +P S+ L+ + + + ++ T A + AC +H +
Sbjct: 77 LFNVLVRGFSLNDSPSSSISLYTHLRRNTNLSPDNFTYAFAVAACSNDKHL---MLLHAH 133
Query: 245 TVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEG 304
++ N+ + +AL+DLY K +V A++VFD M +R+ V WN MI G + ++
Sbjct: 134 SIIDGYGSNVFVGSALVDLYCKFSRVVYARKVFDGMPERDTVLWNTMINGLVKNCCFDDS 193
Query: 305 IKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEG 344
I+LF +V + D T V+ A + L G
Sbjct: 194 IQLFREMV-----ADGVRVDSSTVTAVLPAAAELQELKVG 228
>gi|224118338|ref|XP_002317794.1| predicted protein [Populus trichocarpa]
gi|222858467|gb|EEE96014.1| predicted protein [Populus trichocarpa]
Length = 852
Score = 236 bits (601), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 130/446 (29%), Positives = 237/446 (53%), Gaps = 20/446 (4%)
Query: 43 VFKCIN----NPGTFCVNAVIKAYSNSCVPDQGVVFYLQMI-KNGFMPNSYTFVSLFGSC 97
+F C++ G N++I Y + + D+ + M+ + G P+S+T S+ +C
Sbjct: 385 LFDCMDVLGIERGLISWNSIISGYVRNFMFDEAFSMFQNMLMEEGIEPDSFTLGSVLTAC 444
Query: 98 AKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWN 157
A T + +G H A+ G+ + V +L+ MY + A+ F ++ +D+ +WN
Sbjct: 445 ADTISLRQGKEIHAQAIVKGLQSDTFVGGALVEMYSKCQDLTAAQVAFDEVMEKDVPTWN 504
Query: 158 SIVSGHVRSGDMSAAHELFDIMP----ERNVVSWNIMISGYSKSGNPGCSLKLFREMMKS 213
+++SG+ RS + L + M N+ +WN +++G ++ +++LF EM S
Sbjct: 505 ALISGYTRSNQIERIQYLLEKMKGDGYHPNIYTWNSILAGLVENRQLDLTMQLFSEMQIS 564
Query: 214 GFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVA 273
R + T+ +L AC R A G+ H ++++ ++ + AL+D+Y+KC ++ A
Sbjct: 565 KLRPDIYTVGIILPACSRLATLERGKQAHAHSIKCGYDTDVHIGAALVDMYAKCGSLKYA 624
Query: 274 QRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVIC 333
Q +D +++ NLV NAM+ +HG EEGI LF + +A G I PD +TF+ V+
Sbjct: 625 QLAYDRISNPNLVSHNAMLTACAMHGHGEEGISLFQTM----LALGFI-PDHVTFLSVLS 679
Query: 334 ACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDN 393
+CV + G ++F ++ +Y +KP HY M +L + + EA E+++KMP + D
Sbjct: 680 SCVHVGSVETGCEFF-DLMGYYNVKPTLKHYTSMVDLLSRSGQLHEAYELIKKMPVECD- 737
Query: 394 MSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVAR 453
S++W +LL C G + + E A+ ++++P + Y L N++A A +W D+AR
Sbjct: 738 ----SVLWGALLGGCVTHGNIELGEIAAERLIELEPNNSGNYVLLANLHAYARRWTDLAR 793
Query: 454 VRELMKKRRMGRMPGCRLVDLKEVVE 479
VR +MK R M + PGC ++ K +
Sbjct: 794 VRGMMKDRGMHKSPGCSWIEDKNEIH 819
Score = 155 bits (393), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 125/469 (26%), Positives = 220/469 (46%), Gaps = 36/469 (7%)
Query: 6 QIQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSNS 65
Q+ AH I +G F + F LL+ A G +F+ + A++ Y +
Sbjct: 80 QVHAHTIKTG-FDADGFIDTKLLQMYARCGLLKDADFLFETMPMRNLHSWKAILSVYLDH 138
Query: 66 CVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVM 125
+ ++ + + + +G + + F +F +C+ G VE G HGL +K + V
Sbjct: 139 GLFEEAFLLFQVLQFDGVELDFFVFPLVFKACSGLGSVELGRQLHGLVIKFRFCLNIYVS 198
Query: 126 NSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPE---- 181
N+LI+MYG G++D A+ + V+M RD ++WNS+++ +G + A E + M
Sbjct: 199 NALIDMYGKCGSLDDAKKVLVKMPERDSVTWNSVITACAANGMVYEALEFLEKMKSLDYS 258
Query: 182 -RNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRS 240
NVVSW+ +I G++++G ++++ M G N +T+A VL AC R R + G+
Sbjct: 259 MPNVVSWSAVIGGFAQNGYDEEAIEMLFRMQVEGLVPNAQTLAGVLPACARLQRLDLGKQ 318
Query: 241 VHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGK 300
+HGY R N ++ AL+D+Y +C + A ++F + +N++ N MI+G+C G
Sbjct: 319 LHGYITRHDFISNPVVVNALVDVYRRCGDMGGAAKIFLKFSVKNVLSCNTMIVGYCESGD 378
Query: 301 PEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPN 360
+ +LF + + G IS + I I VR + E F+ M+ I+P+
Sbjct: 379 VSKAKELFDCMDVLGIERGLISWNSI-----ISGYVRNFMFDEAFSMFQNMLMEEGIEPD 433
Query: 361 FAHYWCMANLYAGAELTEEAEEI-LRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVER 419
+ G+ LT A+ I LR+ E + V L F G A+VE
Sbjct: 434 --------SFTLGSVLTACADTISLRQGKE------IHAQAIVKGLQSDTFVGG-ALVEM 478
Query: 420 LAK---------SFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMK 459
+K +F ++ +D + L++ Y + Q E + + E MK
Sbjct: 479 YSKCQDLTAAQVAFDEVMEKDVPTWNALISGYTRSNQIERIQYLLEKMK 527
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 68/292 (23%), Positives = 110/292 (37%), Gaps = 65/292 (22%)
Query: 86 NSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMF 145
N+ + S+ SC C + G H +K G D + + L+ MY G + A +F
Sbjct: 61 NTSKYASVLDSCK---CPKLGKQVHAHTIKTGFDADGFIDTKLLQMYARCGLLKDADFLF 117
Query: 146 VQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLK 205
M R+L SW +I+S ++ G A LF ++ G L
Sbjct: 118 ETMPMRNLHSWKAILSVYLDHGLFEEAFLLFQVLQ------------------FDGVELD 159
Query: 206 LFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYS 265
F V AC GR +HG ++ NI + ALID+Y
Sbjct: 160 FF-------------VFPLVFKACSGLGSVELGRQLHGLVIKFRFCLNIYVSNALIDMYG 206
Query: 266 KCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLF----------------T 309
KC ++ A++V M +R+ V WN++I +G E ++ +
Sbjct: 207 KCGSLDDAKKVLVKMPERDSVTWNSVITACAANGMVYEALEFLEKMKSLDYSMPNVVSWS 266
Query: 310 ALVNGTVAGG---------------SISPDEITFIGVICACVRAELLTEGRK 346
A++ G G + P+ T GV+ AC R + L G++
Sbjct: 267 AVIGGFAQNGYDEEAIEMLFRMQVEGLVPNAQTLAGVLPACARLQRLDLGKQ 318
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 54/197 (27%), Positives = 93/197 (47%), Gaps = 15/197 (7%)
Query: 218 NDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVF 277
N ASVL +C + + G+ VH +T++T + +DT L+ +Y++C ++ A +F
Sbjct: 61 NTSKYASVLDSC-KCPKL--GKQVHAHTIKTGFDADGFIDTKLLQMYARCGLLKDADFLF 117
Query: 278 DSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVR 337
++M RNL W A++ + HG EE LF L + D F V AC
Sbjct: 118 ETMPMRNLHSWKAILSVYLDHGLFEEAFLLFQVL-----QFDGVELDFFVFPLVFKACSG 172
Query: 338 AELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFE 397
+ GR+ +I F + N + ++Y ++A+++L KMPE +
Sbjct: 173 LGSVELGRQLHGLVIKF-RFCLNIYVSNALIDMYGKCGSLDDAKKVLVKMPER------D 225
Query: 398 SIMWVSLLSLCRFQGAV 414
S+ W S+++ C G V
Sbjct: 226 SVTWNSVITACAANGMV 242
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 62/247 (25%), Positives = 99/247 (40%), Gaps = 20/247 (8%)
Query: 6 QIQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSNS 65
Q AH I G + + L+ A GS Y L + I+NP NA++ A +
Sbjct: 591 QAHAHSIKCG-YDTDVHIGAALVDMYAKCGSLKYAQLAYDRISNPNLVSHNAMLTACAMH 649
Query: 66 CVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVM 125
++G+ + M+ GF+P+ TF+S+ SC G VE G L V L
Sbjct: 650 GHGEEGISLFQTMLALGFIPDHVTFLSVLSSCVHVGSVETGCEFFDLMGYYNVKPTLKHY 709
Query: 126 NSLINMYGCFGAMDCARNMFVQMSPR-DLISWNSIVSGHVRSGDMS----AAHELFDIMP 180
S++++ G + A + +M D + W +++ G V G++ AA L ++ P
Sbjct: 710 TSMVDLLSRSGQLHEAYELIKKMPVECDSVLWGALLGGCVTHGNIELGEIAAERLIELEP 769
Query: 181 ERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRG----------NDKTMASVLTACG 230
N ++++ L R MMK RG DK AC
Sbjct: 770 --NNSGNYVLLANLHAYARRWTDLARVRGMMKD--RGMHKSPGCSWIEDKNEIHSFLACD 825
Query: 231 RSARFNE 237
RS + E
Sbjct: 826 RSHKRAE 832
>gi|15222566|ref|NP_173907.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75172213|sp|Q9FRI5.1|PPR57_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g25360
gi|11067273|gb|AAG28801.1|AC079374_4 hypothetical protein [Arabidopsis thaliana]
gi|332192491|gb|AEE30612.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 790
Score = 236 bits (601), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 135/436 (30%), Positives = 221/436 (50%), Gaps = 11/436 (2%)
Query: 48 NNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGG 107
+N NA+I Y N + + +M+ +G + +T+ S+ +CA G ++ G
Sbjct: 247 DNMKLVAYNAMISGYVNRGFYQEALEMVRRMVSSGIELDEFTYPSVIRACATAGLLQLGK 306
Query: 108 MCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSG 167
H L+ DF NSL+++Y G D AR +F +M +DL+SWN+++SG+V SG
Sbjct: 307 QVHAYVLRRE-DFSFHFDNSLVSLYYKCGKFDEARAIFEKMPAKDLVSWNALLSGYVSSG 365
Query: 168 DMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLT 227
+ A +F M E+N++SW IMISG +++G LKLF M + GF D + +
Sbjct: 366 HIGEAKLIFKEMKEKNILSWMIMISGLAENGFGEEGLKLFSCMKREGFEPCDYAFSGAIK 425
Query: 228 ACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVC 287
+C + G+ H ++ ++ ALI +Y+KC VE A++VF +M + V
Sbjct: 426 SCAVLGAYCNGQQYHAQLLKIGFDSSLSAGNALITMYAKCGVVEEARQVFRTMPCLDSVS 485
Query: 288 WNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKY 347
WNA+I HG E + ++ ++ I PD IT + V+ AC A L+ +GRKY
Sbjct: 486 WNALIAALGQHGHGAEAVDVYEEMLK-----KGIRPDRITLLTVLTACSHAGLVDQGRKY 540
Query: 348 FRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSL 407
F M Y+I P HY + +L + +AE ++ +P + +W +LLS
Sbjct: 541 FDSMETVYRIPPGADHYARLIDLLCRSGKFSDAESVIESLP-----FKPTAEIWEALLSG 595
Query: 408 CRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMP 467
CR G + + A + P+ Y L N++A GQWE+VARVR+LM+ R + +
Sbjct: 596 CRVHGNMELGIIAADKLFGLIPEHDGTYMLLSNMHAATGQWEEVARVRKLMRDRGVKKEV 655
Query: 468 GCRLVDLKEVVEKLKV 483
C ++++ V V
Sbjct: 656 ACSWIEMETQVHTFLV 671
Score = 140 bits (353), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 107/418 (25%), Positives = 190/418 (45%), Gaps = 54/418 (12%)
Query: 52 TFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGM-CH 110
T NA+I +S++ + + +M GF P+++TF S+ A E+ + H
Sbjct: 113 TVMYNAMITGFSHNNDGYSAINLFCKMKHEGFKPDNFTFASVLAGLALVADDEKQCVQFH 172
Query: 111 GLALKNGVDFELPVMNSLINMYG-CFGA---MDCARNMFVQMSPRDLISWNSIVSGHVRS 166
ALK+G + V N+L+++Y C + + AR +F ++ +D SW ++++G+V++
Sbjct: 173 AAALKSGAGYITSVSNALVSVYSKCASSPSLLHSARKVFDEILEKDERSWTTMMTGYVKN 232
Query: 167 GDMSAAHELFDIMPER-NVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASV 225
G EL + M + +V++N MISGY G +L++ R M+ SG ++ T SV
Sbjct: 233 GYFDLGEELLEGMDDNMKLVAYNAMISGYVNRGFYQEALEMVRRMVSSGIELDEFTYPSV 292
Query: 226 LTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNL 285
+ AC + G+ VH Y +R + D +L+ LY KC K + A+ +F+ M ++L
Sbjct: 293 IRACATAGLLQLGKQVHAYVLRRE-DFSFHFDNSLVSLYYKCGKFDEARAIFEKMPAKDL 351
Query: 286 VCWNAMILGHCIHGK-------------------------------PEEGIKLFTALVNG 314
V WNA++ G+ G EEG+KLF+ +
Sbjct: 352 VSWNALLSGYVSSGHIGEAKLIFKEMKEKNILSWMIMISGLAENGFGEEGLKLFSCMKR- 410
Query: 315 TVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGA 374
P + F G I +C G++Y Q++ + + + +YA
Sbjct: 411 ----EGFEPCDYAFSGAIKSCAVLGAYCNGQQYHAQLLKI-GFDSSLSAGNALITMYAKC 465
Query: 375 ELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQG----AVAMVERLAKSFVDMD 428
+ EEA ++ R MP +S+ W +L++ G AV + E + K + D
Sbjct: 466 GVVEEARQVFRTMP------CLDSVSWNALIAALGQHGHGAEAVDVYEEMLKKGIRPD 517
Score = 105 bits (262), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 97/388 (25%), Positives = 180/388 (46%), Gaps = 51/388 (13%)
Query: 110 HGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDM 169
HG + G ++N LI++Y ++ AR +F ++S D I+ ++VSG+ SGD+
Sbjct: 37 HGNIITFGFQPRAHILNRLIDVYCKSSELNYARQLFDEISEPDKIARTTMVSGYCASGDI 96
Query: 170 SAAHELFDIMP--ERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLT 227
+ A +F+ P R+ V +N MI+G+S + + ++ LF +M GF+ ++ T ASVL
Sbjct: 97 TLARGVFEKAPVCMRDTVMYNAMITGFSHNNDGYSAINLFCKMKHEGFKPDNFTFASVLA 156
Query: 228 ACGRSARFNEGRSV--HGYTVRTSLKPNIILDTALIDLYSKCQK----VEVAQRVFDSMA 281
A +E + V H +++ + AL+ +YSKC + A++VFD +
Sbjct: 157 GLALVAD-DEKQCVQFHAAALKSGAGYITSVSNALVSVYSKCASSPSLLHSARKVFDEIL 215
Query: 282 DRNLVCWNAMILGHCIHGKPEEGIKL------------FTALVNGTVAGG---------- 319
+++ W M+ G+ +G + G +L + A+++G V G
Sbjct: 216 EKDERSWTTMMTGYVKNGYFDLGEELLEGMDDNMKLVAYNAMISGYVNRGFYQEALEMVR 275
Query: 320 -----SISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYW--CMANLYA 372
I DE T+ VI AC A LL G +Q+ + + +F+ ++ + +LY
Sbjct: 276 RMVSSGIELDEFTYPSVIRACATAGLLQLG----KQVHAYVLRREDFSFHFDNSLVSLYY 331
Query: 373 GAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDF 432
+EA I KMP + + W +LLS G + + + F +M ++
Sbjct: 332 KCGKFDEARAIFEKMPAKD------LVSWNALLSGYVSSGHIGEAKLI---FKEMKEKNI 382
Query: 433 SRYQFLLNVYAVAGQWEDVARVRELMKK 460
+ +++ A G E+ ++ MK+
Sbjct: 383 LSWMIMISGLAENGFGEEGLKLFSCMKR 410
Score = 88.6 bits (218), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 71/273 (26%), Positives = 111/273 (40%), Gaps = 37/273 (13%)
Query: 42 LVFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTG 101
L+FK + +I + + ++G+ + M + GF P Y F SCA G
Sbjct: 372 LIFKEMKEKNILSWMIMISGLAENGFGEEGLKLFSCMKREGFEPCDYAFSGAIKSCAVLG 431
Query: 102 CVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVS 161
G H LK G D L N+LI MY G ++ AR +F M D +SWN+
Sbjct: 432 AYCNGQQYHAQLLKIGFDSSLSAGNALITMYAKCGVVEEARQVFRTMPCLDSVSWNA--- 488
Query: 162 GHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKT 221
+I+ + G+ ++ ++ EM+K G R + T
Sbjct: 489 ----------------------------LIAALGQHGHGAEAVDVYEEMLKKGIRPDRIT 520
Query: 222 MASVLTACGRSARFNEGRS-VHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSM 280
+ +VLTAC + ++GR + P LIDL + K A+ V +S+
Sbjct: 521 LLTVLTACSHAGLVDQGRKYFDSMETVYRIPPGADHYARLIDLLCRSGKFSDAESVIESL 580
Query: 281 ADRNLV-CWNAMILGHCIHGKPEEGI----KLF 308
+ W A++ G +HG E GI KLF
Sbjct: 581 PFKPTAEIWEALLSGCRVHGNMELGIIAADKLF 613
Score = 44.7 bits (104), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 26/112 (23%), Positives = 49/112 (43%), Gaps = 9/112 (8%)
Query: 231 RSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNA 290
R R+VHG + +P + LID+Y K ++ A+++FD +++ + +
Sbjct: 26 RRTSLQLARAVHGNIITFGFQPRAHILNRLIDVYCKSSELNYARQLFDEISEPDKIARTT 85
Query: 291 MILGHCIHGKPEEGIKLF---------TALVNGTVAGGSISPDEITFIGVIC 333
M+ G+C G +F T + N + G S + D + I + C
Sbjct: 86 MVSGYCASGDITLARGVFEKAPVCMRDTVMYNAMITGFSHNNDGYSAINLFC 137
>gi|334182333|ref|NP_172105.4| uncharacterized basic helix-loop-helix protein [Arabidopsis thaliana]
gi|8810477|gb|AAF80138.1|AC024174_20 Contains similarity to an unknown protein T5J8.5 gi|4263522 from
Arabidopsis thaliana BAC T5J8 gb|AC004044 and contains
multiple PPR PF|01535 repeats. ESTs gb|AV565358,
gb|AV558710, gb|AV524184 come from this gene [Arabidopsis
thaliana]
gi|332189826|gb|AEE27947.1| uncharacterized basic helix-loop-helix protein [Arabidopsis thaliana]
Length = 1322
Score = 236 bits (601), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 139/469 (29%), Positives = 234/469 (49%), Gaps = 48/469 (10%)
Query: 34 FGSPDYTVLVFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSL 93
F D V + P F NA+ K + P + + Y++M+++ P+SYT+ SL
Sbjct: 818 FKRLDLAVSTMTQMQEPNVFVYNALFKGFVTCSHPIRSLELYVRMLRDSVSPSSYTYSSL 877
Query: 94 FGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDL 153
A + G K G F + + +LI+ Y G + AR +F +M RD
Sbjct: 878 VK--ASSFASRFGESLQAHIWKFGFGFHVKIQTTLIDFYSATGRIREARKVFDEMPERDD 935
Query: 154 ISWNSIVSGHVRSGDMSAAHEL-------------------------------FDIMPER 182
I+W ++VS + R DM +A+ L F+ MP +
Sbjct: 936 IAWTTMVSAYRRVLDMDSANSLANQMSEKNEATSNCLINGYMGLGNLEQAESLFNQMPVK 995
Query: 183 NVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVH 242
+++SW MI GYS++ ++ +F +MM+ G ++ TM++V++AC G+ VH
Sbjct: 996 DIISWTTMIKGYSQNKRYREAIAVFYKMMEEGIIPDEVTMSTVISACAHLGVLEIGKEVH 1055
Query: 243 GYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPE 302
YT++ ++ + +AL+D+YSKC +E A VF ++ +NL CWN++I G HG +
Sbjct: 1056 MYTLQNGFVLDVYIGSALVDMYSKCGSLERALLVFFNLPKKNLFCWNSIIEGLAAHGFAQ 1115
Query: 303 EGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFA 362
E +K+F + S+ P+ +TF+ V AC A L+ EGR+ +R MID Y I N
Sbjct: 1116 EALKMFAKM-----EMESVKPNAVTFVSVFTACTHAGLVDEGRRIYRSMIDDYSIVSNVE 1170
Query: 363 HYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFE--SIMWVSLLSLCRFQGAVAMVERL 420
HY M +L++ A L EA E++ NM FE +++W +LL CR + + E
Sbjct: 1171 HYGGMVHLFSKAGLIYEALELI-------GNMEFEPNAVIWGALLDGCRIHKNLVIAEIA 1223
Query: 421 AKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRM-PG 468
+ ++P + Y L+++YA +W DVA +R M++ + ++ PG
Sbjct: 1224 FNKLMVLEPMNSGYYFLLVSMYAEQNRWRDVAEIRGRMRELGIEKICPG 1272
>gi|449519932|ref|XP_004166988.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g36730-like [Cucumis sativus]
Length = 516
Score = 236 bits (601), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 149/488 (30%), Positives = 236/488 (48%), Gaps = 48/488 (9%)
Query: 3 QLLQIQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTV---LVFKCINNPGTFCVNAVI 59
L +I A ++ SGL N+SF+T LL+ +A S + + L+F C + T N +I
Sbjct: 45 HLFEIHAQILVSGLQ-NDSFFTTELLRVAALSPSRNLSYGCSLLFHCHFHSATMPWNFII 103
Query: 60 KAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVD 119
+ YS+S P + + + +M + G PN+ TF L +CA ++ G H +A+K G+D
Sbjct: 104 RGYSSSDSPQEAISLFGEMRRRGVRPNNLTFPFLLKACATLATLQEGKQFHAIAIKCGLD 163
Query: 120 FELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIM 179
++ V N+LIN YG M AR +F +M+ R L+SWN++++ V + A
Sbjct: 164 LDVYVRNTLINFYGSCKRMSGARKVFDEMTERTLVSWNAVITACVENFCFDEA------- 216
Query: 180 PERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGR 239
+ F +M GF ++ TM +L+AC + GR
Sbjct: 217 ------------------------IDYFLKMGNHGFEPDETTMVVILSACAELGNLSLGR 252
Query: 240 SVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHG 299
VH V + N+ L TA +D+Y+K V A+ VF+ + +++ W+AMILG HG
Sbjct: 253 WVHSQVVGRGMVLNVQLGTAFVDMYAKSGDVGCARHVFNCLKQKSVWTWSAMILGLAQHG 312
Query: 300 KPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKP 359
E I+LFT + + I P+ +TFIGV+CAC A L+ + YF M Y IKP
Sbjct: 313 FANEAIELFTNMTS-----SPIVPNHVTFIGVLCACSHAGLVDKSYHYFNLMERVYGIKP 367
Query: 360 NFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCR---FQGAVAM 416
HY M ++ A +EA E++ MP + D I+W +LLS C G +
Sbjct: 368 MMIHYGSMVDVLGRAGQVKEAYELIMSMPVEPD-----PIVWRTLLSACSGRDVNGGAEV 422
Query: 417 VERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLKE 476
E K ++++P+ + N +A G W+ A R MK R + +M G ++L
Sbjct: 423 AEEARKRLLELEPKRGGNVVMVANKFAELGMWKQAADYRRTMKDRGIKKMAGESCIELGG 482
Query: 477 VVEKLKVG 484
+ K G
Sbjct: 483 SLRKFFSG 490
>gi|449501934|ref|XP_004161498.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g13770, mitochondrial-like [Cucumis sativus]
Length = 638
Score = 236 bits (601), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 136/446 (30%), Positives = 227/446 (50%), Gaps = 41/446 (9%)
Query: 56 NAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALK 115
A+I AYS + + +++M+++ PN +TF ++ SC + E G H +A+K
Sbjct: 132 TAMISAYSQRGFAFEALNLFVEMLRSDTEPNHFTFATILTSCYGSLGFETGRQIHSIAIK 191
Query: 116 NGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHEL 175
+ + V +SL++MY +SG + AH +
Sbjct: 192 RNYESHMFVGSSLLDMYA-------------------------------KSGRICDAHGV 220
Query: 176 FDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARF 235
F +PER+VV+ +ISGY++ G +LKLFR++ G N T ASVLTA A
Sbjct: 221 FHCLPERDVVACTAIISGYAQMGLDEEALKLFRQLQIEGMNSNSVTYASVLTALSGLAAL 280
Query: 236 NEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGH 295
N G+ VH + +R+ ++L +LID+YSKC V A+R+FDSM +R + WNAM++G+
Sbjct: 281 NHGKQVHSHVLRSGQYSYVVLLNSLIDMYSKCGNVCYARRIFDSMPERTCISWNAMLVGY 340
Query: 296 CIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFY 355
HG E ++LF + + PD IT++ V+ C +L G + F M++
Sbjct: 341 SKHGMAREVLELFKLMREEN----KVKPDSITYLAVLSGCSHGQLEDMGLEIFYNMVNGK 396
Query: 356 K-IKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAV 414
I+P+ HY C+ +L A EEA + ++KMP + +W SLL CR V
Sbjct: 397 DGIEPDIGHYGCVVDLLGRAGRVEEAFDFIKKMP-----FVPTAAIWGSLLGSCRVHSDV 451
Query: 415 AMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDL 474
+ + + ++++P++ Y L N+YA AG+WED+ +R+LM+++ + + PG V+L
Sbjct: 452 EIGIIVGQKLLELEPENAGNYVILSNLYASAGKWEDMRNIRDLMQEKAVTKEPGRSWVEL 511
Query: 475 KEVVEKLKVGHFWRGGMKEEVNKMME 500
++V +E NK+ E
Sbjct: 512 DQIVHTFHASDHTHPRREEVANKVKE 537
Score = 106 bits (264), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 84/316 (26%), Positives = 150/316 (47%), Gaps = 41/316 (12%)
Query: 169 MSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTA 228
+ A +FD MP+RNVVSW MIS YS+ G +L LF EM++S N T A++LT+
Sbjct: 113 LGDARGMFDEMPQRNVVSWTAMISAYSQRGFAFEALNLFVEMLRSDTEPNHFTFATILTS 172
Query: 229 CGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCW 288
C S F GR +H ++ + + ++ + ++L+D+Y+K ++ A VF + +R++V
Sbjct: 173 CYGSLGFETGRQIHSIAIKRNYESHMFVGSSLLDMYAKSGRICDAHGVFHCLPERDVVAC 232
Query: 289 NAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRK-- 346
A+I G+ G EE +KLF L + G ++ + +T+ V+ A L G++
Sbjct: 233 TAIISGYAQMGLDEEALKLFRQL---QIEG--MNSNSVTYASVLTALSGLAALNHGKQVH 287
Query: 347 -------------YFRQMIDFY----------KIKPNFAHYWC-----MANLYAGAELTE 378
+ID Y +I + C M Y+ +
Sbjct: 288 SHVLRSGQYSYVVLLNSLIDMYSKCGNVCYARRIFDSMPERTCISWNAMLVGYSKHGMAR 347
Query: 379 EAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVD----MDPQDFSR 434
E E+ + M E+N + +SI ++++LS C M + + V+ ++P D
Sbjct: 348 EVLELFKLMREEN-KVKPDSITYLAVLSGCSHGQLEDMGLEIFYNMVNGKDGIEP-DIGH 405
Query: 435 YQFLLNVYAVAGQWED 450
Y ++++ AG+ E+
Sbjct: 406 YGCVVDLLGRAGRVEE 421
Score = 80.1 bits (196), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 54/203 (26%), Positives = 92/203 (45%), Gaps = 7/203 (3%)
Query: 43 VFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGC 102
VF C+ A+I Y+ + ++ + + Q+ G NS T+ S+ + +
Sbjct: 220 VFHCLPERDVVACTAIISGYAQMGLDEEALKLFRQLQIEGMNSNSVTYASVLTALSGLAA 279
Query: 103 VERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSG 162
+ G H L++G + ++NSLI+MY G + AR +F M R ISWN+++ G
Sbjct: 280 LNHGKQVHSHVLRSGQYSYVVLLNSLIDMYSKCGNVCYARRIFDSMPERTCISWNAMLVG 339
Query: 163 HVRSGDMSAAHELFDIMPERNVV-----SWNIMISGYSKSGNPGCSLKLFREMM--KSGF 215
+ + G ELF +M E N V ++ ++SG S L++F M+ K G
Sbjct: 340 YSKHGMAREVLELFKLMREENKVKPDSITYLAVLSGCSHGQLEDMGLEIFYNMVNGKDGI 399
Query: 216 RGNDKTMASVLTACGRSARFNEG 238
+ V+ GR+ R E
Sbjct: 400 EPDIGHYGCVVDLLGRAGRVEEA 422
Score = 72.4 bits (176), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 50/181 (27%), Positives = 82/181 (45%), Gaps = 18/181 (9%)
Query: 215 FRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQ 274
F G D S+L C EG+ VH + ++T P++ L T LI LY+KC + A+
Sbjct: 62 FEGYD----SILNECVSQRAIREGQRVHTHMIKTCYLPSVYLRTRLIVLYNKCDCLGDAR 117
Query: 275 RVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICA 334
+FD M RN+V W AMI + G E + LF ++ P+ TF ++ +
Sbjct: 118 GMFDEMPQRNVVSWTAMISAYSQRGFAFEALNLFVEMLRSDT-----EPNHFTFATILTS 172
Query: 335 CVRAELLTEGRKYFRQMIDFYKIKPNFAHYW----CMANLYAGAELTEEAEEILRKMPED 390
C + GR+ I IK N+ + + ++YA + +A + +PE
Sbjct: 173 CYGSLGFETGRQ-----IHSIAIKRNYESHMFVGSSLLDMYAKSGRICDAHGVFHCLPER 227
Query: 391 N 391
+
Sbjct: 228 D 228
>gi|77553484|gb|ABA96280.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
gi|125578286|gb|EAZ19432.1| hypothetical protein OsJ_34992 [Oryza sativa Japonica Group]
Length = 518
Score = 236 bits (601), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 149/498 (29%), Positives = 240/498 (48%), Gaps = 59/498 (11%)
Query: 6 QIQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSNS 65
Q+ A L GL + F + L + + + + +P C VI A+S+S
Sbjct: 22 QLHALLAKLGLLHRSEFLSALLSRLPPSPSALSLLLEAPPAVLSPSLVC--PVIVAFSSS 79
Query: 66 CVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAK-----------TGCVERGGMCHGLAL 114
P ++ + TF +L SCA+ + V +G H L
Sbjct: 80 QAPSSALLLFNHASSCSLPTPLPTFPALLKSCARAFNHSSRASAASVFVSKGMELHCRVL 139
Query: 115 KNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGH----------- 163
K G + V N+L++MYG FG + AR F +M ++ +SWN++V H
Sbjct: 140 KLGCGKDRYVRNALVSMYGKFGRLGDARKAFDEMPDKNAVSWNALVGAHRAAADWMGADR 199
Query: 164 --------------------VRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCS 203
VR G M A +F MPER+ VSWN +ISGY+K G +
Sbjct: 200 VSQAMPVRNLSWWNAEIARNVRIGYMDEAARIFSEMPERDAVSWNSLISGYTKLGKYTQA 259
Query: 204 LKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDL 263
L +F+EM ++G + + T+ VL AC + + + G ++H + + ++ ALID+
Sbjct: 260 LGIFQEMQENGIQPTELTLVLVLGACAKIGKLDLGTNIHRNLQNKGIVADGLVGNALIDM 319
Query: 264 YSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISP 323
Y+KC +++A++VFD M+ R++ CWNAMI+G +HG E ++LF ++ I P
Sbjct: 320 YAKCGMLDLAKKVFDRMSMRDITCWNAMIVGFSVHGCSREALELFDSM--------KIEP 371
Query: 324 DEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEI 383
+ +TF+GV+ AC L+ EGRKYF MI+ Y+I P+ HY CM ++ EEA +
Sbjct: 372 NPVTFLGVLTACSHGGLVNEGRKYFNSMIEDYRIVPDVKHYGCMIDMLCRYGKIEEAYLM 431
Query: 384 LRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYA 443
+++ P + S++W LL+ CR G + + ++ D + NVYA
Sbjct: 432 IKENPS-----TASSVLWKMLLAACRVHGHIDLAYMFFHELRELILTDNGGLVTISNVYA 486
Query: 444 VAGQWEDVARVRELMKKR 461
A +W+DV +R MK R
Sbjct: 487 EAKRWDDVEHLR--MKVR 502
>gi|225428400|ref|XP_002283651.1| PREDICTED: pentatricopeptide repeat-containing protein At4g21065
[Vitis vinifera]
gi|297744424|emb|CBI37686.3| unnamed protein product [Vitis vinifera]
Length = 571
Score = 236 bits (601), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 145/454 (31%), Positives = 220/454 (48%), Gaps = 45/454 (9%)
Query: 35 GSPDYTVLVFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMI--KNGFMPNSYTFVS 92
G Y L+ ++ +F N +I+AYS + P Q + +L M+ P+ +T+
Sbjct: 42 GDLTYAHLILNSLSTQNSFFHNTMIRAYSQTPDPTQALHLFLSMLCQPTSPRPDKFTYPF 101
Query: 93 LFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRD 152
L SCA+ G HGL K+G++ + V N LI+MY G A +F +M RD
Sbjct: 102 LLKSCARLKQPRVGKQLHGLIYKSGLESDRYVSNGLIHMYSSCGKSGRAYKVFGKMRDRD 161
Query: 153 LISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMK 212
++SW S++ G V D A E +++LF EM++
Sbjct: 162 VVSWTSMIDGFV---DDDRALE----------------------------AIRLFEEMVE 190
Query: 213 SGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEV 272
G N+ T+ SVL AC + GR V G + + TALID+Y+KC +
Sbjct: 191 DGVEPNEATVVSVLRACADAGAVGMGRRVQGVIEERKIGLEANVRTALIDMYAKCGSIGS 250
Query: 273 AQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVI 332
A++VFD + ++++ W AMI G HG EE + LF + + PDE T V+
Sbjct: 251 ARKVFDGIVNKDVFAWTAMISGLANHGLCEEAVTLFDQM-----ESFGLRPDERTMTAVL 305
Query: 333 CACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDND 392
AC A +EG YF M Y IKP HY CM +L A +EAEE +RKMP + D
Sbjct: 306 SACRNAGWFSEGFAYFNSMWCKYGIKPTIQHYGCMVDLLARTGHLDEAEEFIRKMPIEPD 365
Query: 393 NMSFESIMWVSLLSLCRFQGAVAMVERLAKS--FVDMDPQDFSRYQFLLNVYAVAGQWED 450
+ + +++W S + G + E+L K + MD D Y L NVYA AG+W D
Sbjct: 366 VVLWRTLIWAS-----KVHGDIDRSEQLMKDRGLLKMDSDDCGSYVLLGNVYASAGKWHD 420
Query: 451 VARVRELMKKRRMGRMPGCRLVDLKEVVEKLKVG 484
A++RELM ++ + + PGC +++ +V + G
Sbjct: 421 KAKMRELMNQKGLSKPPGCSRIEVDGLVHEFAAG 454
Score = 94.7 bits (234), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 56/183 (30%), Positives = 93/183 (50%), Gaps = 7/183 (3%)
Query: 166 SGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMM--KSGFRGNDKTMA 223
+GD++ AH + + + +N N MI YS++ +P +L LF M+ + R + T
Sbjct: 41 AGDLTYAHLILNSLSTQNSFFHNTMIRAYSQTPDPTQALHLFLSMLCQPTSPRPDKFTYP 100
Query: 224 SVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADR 283
+L +C R + G+ +HG ++ L+ + + LI +YS C K A +VF M DR
Sbjct: 101 FLLKSCARLKQPRVGKQLHGLIYKSGLESDRYVSNGLIHMYSSCGKSGRAYKVFGKMRDR 160
Query: 284 NLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTE 343
++V W +MI G + E I+LF +V V P+E T + V+ AC A +
Sbjct: 161 DVVSWTSMIDGFVDDDRALEAIRLFEEMVEDGV-----EPNEATVVSVLRACADAGAVGM 215
Query: 344 GRK 346
GR+
Sbjct: 216 GRR 218
>gi|449475140|ref|XP_004154387.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
chloroplastic-like [Cucumis sativus]
gi|449522468|ref|XP_004168248.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
chloroplastic-like [Cucumis sativus]
Length = 574
Score = 235 bits (600), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 140/469 (29%), Positives = 234/469 (49%), Gaps = 43/469 (9%)
Query: 6 QIQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSNS 65
Q+ A + G+ FN T L+ S L+F I+ F N +I+ Y+ +
Sbjct: 22 QLHARICQVGISFNPLLAT-KLVNLYCICNSLTNAHLLFDRISKRNLFLWNVMIRGYAWN 80
Query: 66 CVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVM 125
+ + Y QM G +P+ +TF + +C+ +E G H +++G++ ++ V
Sbjct: 81 GPYELAISLYYQMRDYGLVPDKFTFPFVLKACSALSAMEEGKKIHKDVIRSGLESDVFVG 140
Query: 126 NSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVV 185
+LI+MY G ++ AR ++FD + ER+VV
Sbjct: 141 AALIDMYAKCGCVESAR-------------------------------QVFDKIDERDVV 169
Query: 186 SWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYT 245
WN M++ YS++G P SL L R M +G + + T + A + +G+ +HGY+
Sbjct: 170 CWNSMLATYSQNGQPDESLALCRVMAFNGLKPTEGTFVISIAASADNGLLPQGKELHGYS 229
Query: 246 VRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGI 305
R + N + TAL+D+Y+K V VA+ +F+ + ++ +V WNAMI G+ +HG E +
Sbjct: 230 WRHGFESNDKVKTALMDMYAKSGSVNVARSLFELLEEKRVVSWNAMITGYAMHGHANEAL 289
Query: 306 KLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYW 365
LF + G + PD ITF+GV+ AC LL EG+ +FR MI + I P HY
Sbjct: 290 DLFKEM------KGKVLPDHITFVGVLAACSHGGLLNEGKMHFRSMISDFNIWPTVQHYT 343
Query: 366 CMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFV 425
CM +L EEA +++ +M + D + +W +LL C+ G V M E + V
Sbjct: 344 CMIDLLGHCGRLEEAYKLIMEMRVEPD-----AGVWGALLHSCKIHGNVEMGELALEKLV 398
Query: 426 DMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDL 474
+++P D Y L N+YA AG+W+ VAR+R+LM + + + C +++
Sbjct: 399 ELEPDDGGNYVILSNMYAQAGKWDGVARLRDLMMNKGLKKSIACSWIEV 447
Score = 115 bits (288), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 70/257 (27%), Positives = 121/257 (47%), Gaps = 36/257 (14%)
Query: 90 FVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMS 149
+ SL SC +E G H + G+ F + L+N+Y ++ A +F ++S
Sbjct: 4 YASLLQSCVVRKAIEPGKQLHARICQVGISFNPLLATKLVNLYCICNSLTNAHLLFDRIS 63
Query: 150 PRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFRE 209
R+L WN +MI GY+ +G ++ L+ +
Sbjct: 64 KRNLFLWN-------------------------------VMIRGYAWNGPYELAISLYYQ 92
Query: 210 MMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQK 269
M G + T VL AC + EG+ +H +R+ L+ ++ + ALID+Y+KC
Sbjct: 93 MRDYGLVPDKFTFPFVLKACSALSAMEEGKKIHKDVIRSGLESDVFVGAALIDMYAKCGC 152
Query: 270 VEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFI 329
VE A++VFD + +R++VCWN+M+ + +G+P+E + L + A + P E TF+
Sbjct: 153 VESARQVFDKIDERDVVCWNSMLATYSQNGQPDESLALCRVM-----AFNGLKPTEGTFV 207
Query: 330 GVICACVRAELLTEGRK 346
I A LL +G++
Sbjct: 208 ISIAASADNGLLPQGKE 224
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 81/328 (24%), Positives = 141/328 (42%), Gaps = 44/328 (13%)
Query: 1 MKQLLQIQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIK 60
M++ +I +I SGL ++ F L+ A G + VF I+ C N+++
Sbjct: 118 MEEGKKIHKDVIRSGLE-SDVFVGAALIDMYAKCGCVESARQVFDKIDERDVVCWNSMLA 176
Query: 61 AYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDF 120
YS + PD+ + M NG P TFV + A G + +G HG + ++G +
Sbjct: 177 TYSQNGQPDESLALCRVMAFNGLKPTEGTFVISIAASADNGLLPQGKELHGYSWRHGFES 236
Query: 121 ELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMP 180
V +L++MY G+++ AR++F + + ++SWN++++G
Sbjct: 237 NDKVKTALMDMYAKSGSVNVARSLFELLEEKRVVSWNAMITG------------------ 278
Query: 181 ERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRS 240
Y+ G+ +L LF+E MK + T VL AC NEG+
Sbjct: 279 -------------YAMHGHANEALDLFKE-MKGKVLPDHITFVGVLAACSHGGLLNEGK- 323
Query: 241 VHGYTVRTSLK--PNIILDTALIDLYSKCQKVEVAQRVFDSM-ADRNLVCWNAMILGHCI 297
+H ++ + P + T +IDL C ++E A ++ M + + W A++ I
Sbjct: 324 MHFRSMISDFNIWPTVQHYTCMIDLLGHCGRLEEAYKLIMEMRVEPDAGVWGALLHSCKI 383
Query: 298 HGKPEEGIKLFTALVNGTVAGGSISPDE 325
HG E G LV + PD+
Sbjct: 384 HGNVEMGELALEKLVE-------LEPDD 404
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 48/184 (26%), Positives = 86/184 (46%), Gaps = 12/184 (6%)
Query: 223 ASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMAD 282
AS+L +C G+ +H + + N +L T L++LY C + A +FD ++
Sbjct: 5 ASLLQSCVVRKAIEPGKQLHARICQVGISFNPLLATKLVNLYCICNSLTNAHLLFDRISK 64
Query: 283 RNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLT 342
RNL WN MI G+ +G E I L+ + + + PD+ TF V+ AC +
Sbjct: 65 RNLFLWNVMIRGYAWNGPYELAISLYYQMRD-----YGLVPDKFTFPFVLKACSALSAME 119
Query: 343 EGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWV 402
EG+K + +I ++ + + ++YA E A ++ K+ E + + W
Sbjct: 120 EGKKIHKDVIR-SGLESDVFVGAALIDMYAKCGCVESARQVFDKIDER------DVVCWN 172
Query: 403 SLLS 406
S+L+
Sbjct: 173 SMLA 176
>gi|115486992|ref|NP_001065983.1| Os12g0114400 [Oryza sativa Japonica Group]
gi|113648490|dbj|BAF29002.1| Os12g0114400, partial [Oryza sativa Japonica Group]
Length = 504
Score = 235 bits (600), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 149/498 (29%), Positives = 240/498 (48%), Gaps = 59/498 (11%)
Query: 6 QIQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSNS 65
Q+ A L GL + F + L + + + + +P C VI A+S+S
Sbjct: 8 QLHALLAKLGLLHRSEFLSALLSRLPPSPSALSLLLEAPPAVLSPSLVC--PVIVAFSSS 65
Query: 66 CVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAK-----------TGCVERGGMCHGLAL 114
P ++ + TF +L SCA+ + V +G H L
Sbjct: 66 QAPSSALLLFNHASSCSLPTPLPTFPALLKSCARAFNHSSRASAASVFVSKGMELHCRVL 125
Query: 115 KNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGH----------- 163
K G + V N+L++MYG FG + AR F +M ++ +SWN++V H
Sbjct: 126 KLGCGKDRYVRNALVSMYGKFGRLGDARKAFDEMPDKNAVSWNALVGAHRAAADWMGADR 185
Query: 164 --------------------VRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCS 203
VR G M A +F MPER+ VSWN +ISGY+K G +
Sbjct: 186 VSQAMPVRNLSWWNAEIARNVRIGYMDEAARIFSEMPERDAVSWNSLISGYTKLGKYTQA 245
Query: 204 LKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDL 263
L +F+EM ++G + + T+ VL AC + + + G ++H + + ++ ALID+
Sbjct: 246 LGIFQEMQENGIQPTELTLVLVLGACAKIGKLDLGTNIHRNLQNKGIVADGLVGNALIDM 305
Query: 264 YSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISP 323
Y+KC +++A++VFD M+ R++ CWNAMI+G +HG E ++LF ++ I P
Sbjct: 306 YAKCGMLDLAKKVFDRMSMRDITCWNAMIVGFSVHGCSREALELFDSM--------KIEP 357
Query: 324 DEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEI 383
+ +TF+GV+ AC L+ EGRKYF MI+ Y+I P+ HY CM ++ EEA +
Sbjct: 358 NPVTFLGVLTACSHGGLVNEGRKYFNSMIEDYRIVPDVKHYGCMIDMLCRYGKIEEAYLM 417
Query: 384 LRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYA 443
+++ P + S++W LL+ CR G + + ++ D + NVYA
Sbjct: 418 IKENPS-----TASSVLWKMLLAACRVHGHIDLAYMFFHELRELILTDNGGLVTISNVYA 472
Query: 444 VAGQWEDVARVRELMKKR 461
A +W+DV +R MK R
Sbjct: 473 EAKRWDDVEHLR--MKVR 488
>gi|356499129|ref|XP_003518395.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g34400-like [Glycine max]
Length = 614
Score = 235 bits (600), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 132/443 (29%), Positives = 226/443 (51%), Gaps = 40/443 (9%)
Query: 43 VFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQM-IKNGFMPNSYTFVSLFGSCAKTG 101
VF I + + N++I Y+ + + V + +M ++GF P+ + VSL G+C + G
Sbjct: 179 VFDEIPHRDSVSWNSMIAGYAKAGCAREAVEVFREMGRRDGFEPDEMSLVSLLGACGELG 238
Query: 102 CVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVS 161
+E G G ++ G+ + ++LI+MY
Sbjct: 239 DLELGRWVEGFVVERGMTLNSYIGSALISMYA---------------------------- 270
Query: 162 GHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKT 221
+ G++ +A +FD M R+V++WN +ISGY+++G ++ LF M + N T
Sbjct: 271 ---KCGELESARRIFDGMAARDVITWNAVISGYAQNGMADEAILLFHGMKEDCVTANKIT 327
Query: 222 MASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMA 281
+ +VL+AC + G+ + Y + + +I + TALID+Y+K ++ AQRVF M
Sbjct: 328 LTAVLSACATIGALDLGKQIDEYASQRGFQHDIFVATALIDMYAKSGSLDNAQRVFKDMP 387
Query: 282 DRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELL 341
+N WNAMI HGK +E + LF + + GG P++ITF+G++ ACV A L+
Sbjct: 388 QKNEASWNAMISALAAHGKAKEALSLFQHMSD---EGGGARPNDITFVGLLSACVHAGLV 444
Query: 342 TEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMW 401
EG + F M + + P HY CM +L A A EA +++RKMPE D ++
Sbjct: 445 DEGYRLFDMMSTLFGLVPKIEHYSCMVDLLARAGHLYEAWDLIRKMPEKPDKVTLG---- 500
Query: 402 VSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKR 461
+LL CR + V + ER+ + +++DP + Y +YA WED AR+R LM+++
Sbjct: 501 -ALLGACRSKKNVDIGERVMRMILEVDPSNSGNYIISSKIYANLNMWEDSARMRLLMRQK 559
Query: 462 RMGRMPGCRLVDLKEVVEKLKVG 484
+ + PGC ++++ + + G
Sbjct: 560 GITKTPGCSWIEVENHLHEFHAG 582
Score = 159 bits (403), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 141/532 (26%), Positives = 239/532 (44%), Gaps = 100/532 (18%)
Query: 2 KQLLQIQAHLITSGLFFNNSFWTIN--LLKHSADFGSPDYTVLVFKCIN-NPGTFCVNAV 58
K L Q+ ++ N+S T N LL + + Y+ L+F I +P + N +
Sbjct: 38 KTLQQVHTQMVV-----NSSIHTPNNHLLSKAIHLKNFPYSSLLFSHIAPHPNDYAFNIM 92
Query: 59 IKAYSNSC--VPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKN 116
I+A + + P +F+ +M+ P+++TF F SCA + H L K
Sbjct: 93 IRALTTTWHNYPLALSLFH-RMMSLSLTPDNFTFPFFFLSCANLASLSHACAAHSLLFKL 151
Query: 117 GVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELF 176
+ + +SLI Y R G +++A ++F
Sbjct: 152 ALHSDPHTAHSLITAYA-------------------------------RCGLVASARKVF 180
Query: 177 DIMPERNVVSWNIMISGYSKSGNPGCSLKLFREM-MKSGFRGNDKTMASVLTACGRSARF 235
D +P R+ VSWN MI+GY+K+G ++++FREM + GF ++ ++ S+L ACG
Sbjct: 181 DEIPHRDSVSWNSMIAGYAKAGCAREAVEVFREMGRRDGFEPDEMSLVSLLGACGELGDL 240
Query: 236 NEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGH 295
GR V G+ V + N + +ALI +Y+KC ++E A+R+FD MA R+++ WNA+I G+
Sbjct: 241 ELGRWVEGFVVERGMTLNSYIGSALISMYAKCGELESARRIFDGMAARDVITWNAVISGY 300
Query: 296 CIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFY 355
+G +E I LF + V + ++IT V+ AC L G++ ID Y
Sbjct: 301 AQNGMADEAILLFHGMKEDCV-----TANKITLTAVLSACATIGALDLGKQ-----IDEY 350
Query: 356 KIKPNFAHYWCMA----NLYAGAELTEEAEEILRKMPEDND------------------- 392
+ F H +A ++YA + + A+ + + MP+ N+
Sbjct: 351 ASQRGFQHDIFVATALIDMYAKSGSLDNAQRVFKDMPQKNEASWNAMISALAAHGKAKEA 410
Query: 393 -----NMSFE-------SIMWVSLLSLCRFQGAVAMVERL---AKSFVDMDPQDFSRYQF 437
+MS E I +V LLS C G V RL + + P+ Y
Sbjct: 411 LSLFQHMSDEGGGARPNDITFVGLLSACVHAGLVDEGYRLFDMMSTLFGLVPK-IEHYSC 469
Query: 438 LLNVYAVAGQ----WEDVARVRELMKKRRMGRMPG-CRL---VDLKEVVEKL 481
++++ A AG W+ + ++ E K +G + G CR VD+ E V ++
Sbjct: 470 MVDLLARAGHLYEAWDLIRKMPEKPDKVTLGALLGACRSKKNVDIGERVMRM 521
>gi|15225445|ref|NP_178983.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75206168|sp|Q9SIT7.1|PP151_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g13600
gi|4558664|gb|AAD22682.1| hypothetical protein [Arabidopsis thaliana]
gi|330251150|gb|AEC06244.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 697
Score = 235 bits (600), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 139/477 (29%), Positives = 243/477 (50%), Gaps = 18/477 (3%)
Query: 7 IQAH-LITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSNS 65
+Q H LI F ++ + L+ + G+ + VF + + N++I + +
Sbjct: 172 VQVHSLIAKSPFLSDVYIGSALVDMYSKCGNVNDAQRVFDEMGDRNVVSWNSLITCFEQN 231
Query: 66 CVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNG-VDFELPV 124
+ + + M+++ P+ T S+ +CA ++ G HG +KN + ++ +
Sbjct: 232 GPAVEALDVFQMMLESRVEPDEVTLASVISACASLSAIKVGQEVHGRVVKNDKLRNDIIL 291
Query: 125 MNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNV 184
N+ ++MY + AR +F M R++I+ S++SG+ + AA +F M ERNV
Sbjct: 292 SNAFVDMYAKCSRIKEARFIFDSMPIRNVIAETSMISGYAMAASTKAARLMFTKMAERNV 351
Query: 185 VSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSV--- 241
VSWN +I+GY+++G +L LF + + + A++L AC A + G
Sbjct: 352 VSWNALIAGYTQNGENEEALSLFCLLKRESVCPTHYSFANILKACADLAELHLGMQAHVH 411
Query: 242 ---HGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIH 298
HG+ ++ + +I + +LID+Y KC VE VF M +R+ V WNAMI+G +
Sbjct: 412 VLKHGFKFQSGEEDDIFVGNSLIDMYVKCGCVEEGYLVFRKMMERDCVSWNAMIIGFAQN 471
Query: 299 GKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIK 358
G E ++LF ++ PD IT IGV+ AC A + EGR YF M + +
Sbjct: 472 GYGNEALELFREMLE-----SGEKPDHITMIGVLSACGHAGFVEEGRHYFSSMTRDFGVA 526
Query: 359 PNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVE 418
P HY CM +L A EEA+ ++ +MP M +S++W SLL+ C+ + + +
Sbjct: 527 PLRDHYTCMVDLLGRAGFLEEAKSMIEEMP-----MQPDSVIWGSLLAACKVHRNITLGK 581
Query: 419 RLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLK 475
+A+ ++++P + Y L N+YA G+WEDV VR+ M+K + + PGC + ++
Sbjct: 582 YVAEKLLEVEPSNSGPYVLLSNMYAELGKWEDVMNVRKSMRKEGVTKQPGCSWIKIQ 638
Score = 169 bits (428), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 98/307 (31%), Positives = 157/307 (51%), Gaps = 6/307 (1%)
Query: 86 NSYTFVSLFGSCAKTGCVE-RGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNM 144
+S F L SC K+ H +K+G E+ + N LI+ Y G+++ R +
Sbjct: 18 DSSPFAKLLDSCIKSKLSAIYVRYVHASVIKSGFSNEIFIQNRLIDAYSKCGSLEDGRQV 77
Query: 145 FVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSL 204
F +M R++ +WNS+V+G + G + A LF MPER+ +WN M+SG+++ +L
Sbjct: 78 FDKMPQRNIYTWNSVVTGLTKLGFLDEADSLFRSMPERDQCTWNSMVSGFAQHDRCEEAL 137
Query: 205 KLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLY 264
F M K GF N+ + ASVL+AC N+G VH ++ ++ + +AL+D+Y
Sbjct: 138 CYFAMMHKEGFVLNEYSFASVLSACSGLNDMNKGVQVHSLIAKSPFLSDVYIGSALVDMY 197
Query: 265 SKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPD 324
SKC V AQRVFD M DRN+V WN++I +G E + +F ++ V PD
Sbjct: 198 SKCGNVNDAQRVFDEMGDRNVVSWNSLITCFEQNGPAVEALDVFQMMLESRV-----EPD 252
Query: 325 EITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEIL 384
E+T VI AC + G++ +++ K++ + ++YA +EA I
Sbjct: 253 EVTLASVISACASLSAIKVGQEVHGRVVKNDKLRNDIILSNAFVDMYAKCSRIKEARFIF 312
Query: 385 RKMPEDN 391
MP N
Sbjct: 313 DSMPIRN 319
Score = 122 bits (306), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 89/371 (23%), Positives = 169/371 (45%), Gaps = 73/371 (19%)
Query: 56 NAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALK 115
N+++ ++ ++ + ++ M K GF+ N Y+F S+ +C+ + +G H L K
Sbjct: 121 NSMVSGFAQHDRCEEALCYFAMMHKEGFVLNEYSFASVLSACSGLNDMNKGVQVHSLIAK 180
Query: 116 NGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHEL 175
+ ++ + ++L++MY G ++ A+ +F +M R+++SWNS
Sbjct: 181 SPFLSDVYIGSALVDMYSKCGNVNDAQRVFDEMGDRNVVSWNS----------------- 223
Query: 176 FDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARF 235
+I+ + ++G +L +F+ M++S ++ T+ASV++AC +
Sbjct: 224 --------------LITCFEQNGPAVEALDVFQMMLESRVEPDEVTLASVISACASLSAI 269
Query: 236 NEGRSVHGYTVRTS-LKPNIILDTALIDLYSKCQKVEVAQRVFDS--------------- 279
G+ VHG V+ L+ +IIL A +D+Y+KC +++ A+ +FDS
Sbjct: 270 KVGQEVHGRVVKNDKLRNDIILSNAFVDMYAKCSRIKEARFIFDSMPIRNVIAETSMISG 329
Query: 280 ----------------MADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISP 323
MA+RN+V WNA+I G+ +G+ EE + LF L S+ P
Sbjct: 330 YAMAASTKAARLMFTKMAERNVVSWNALIAGYTQNGENEEALSLFCLLKR-----ESVCP 384
Query: 324 DEITFIGVICACVR-AELLTEGRKYFRQMIDFYKIKPNFAHYWCMAN----LYAGAELTE 378
+F ++ AC AEL + + + +K + + N +Y E
Sbjct: 385 THYSFANILKACADLAELHLGMQAHVHVLKHGFKFQSGEEDDIFVGNSLIDMYVKCGCVE 444
Query: 379 EAEEILRKMPE 389
E + RKM E
Sbjct: 445 EGYLVFRKMME 455
>gi|356553819|ref|XP_003545249.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g34400-like [Glycine max]
Length = 608
Score = 235 bits (600), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 129/430 (30%), Positives = 220/430 (51%), Gaps = 40/430 (9%)
Query: 56 NAVIKAYSNSCVPDQGVVFYLQM-IKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLAL 114
N++I Y+ + + V + +M ++GF P+ + VS+ G+C + G +E G G +
Sbjct: 186 NSMIAGYAKAGCAREAVEVFGEMGRRDGFEPDEMSLVSVLGACGELGDLELGRWVEGFVV 245
Query: 115 KNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHE 174
+ G+ + ++LI+MY + GD+ +A
Sbjct: 246 ERGMTLNSYIGSALISMYA-------------------------------KCGDLGSARR 274
Query: 175 LFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSAR 234
+FD M R+V++WN +ISGY+++G ++ LF M + N T+ +VL+AC
Sbjct: 275 IFDGMAARDVITWNAVISGYAQNGMADEAISLFHAMKEDCVTENKITLTAVLSACATIGA 334
Query: 235 FNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILG 294
+ G+ + Y + + +I + TALID+Y+KC + AQRVF M +N WNAMI
Sbjct: 335 LDLGKQIDEYASQRGFQHDIFVATALIDMYAKCGSLASAQRVFKEMPQKNEASWNAMISA 394
Query: 295 HCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDF 354
HGK +E + LF + + GG P++ITF+G++ ACV A L+ EG + F M
Sbjct: 395 LASHGKAKEALSLFQCMSD---EGGGARPNDITFVGLLSACVHAGLVNEGYRLFDMMSTL 451
Query: 355 YKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAV 414
+ + P HY CM +L A A EA +++ KMPE D ++ +LL CR + V
Sbjct: 452 FGLVPKIEHYSCMVDLLARAGHLYEAWDLIEKMPEKPDKVTLG-----ALLGACRSKKNV 506
Query: 415 AMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDL 474
+ ER+ + +++DP + Y +YA WED AR+R LM+++ + + PGC +++
Sbjct: 507 DIGERVIRMILEVDPSNSGNYIISSKIYANLNMWEDSARMRLLMRQKGITKTPGCSWIEV 566
Query: 475 KEVVEKLKVG 484
+ + + G
Sbjct: 567 ENHLHEFHAG 576
Score = 79.3 bits (194), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 56/191 (29%), Positives = 92/191 (48%), Gaps = 6/191 (3%)
Query: 157 NSIVSGHVRSGDMSAAHELFD-IMPERNVVSWNIMISGYSKS-GNPGCSLKLFREMMKSG 214
N ++S + + + A LF I P N ++NIMI + + + +L LF MM
Sbjct: 52 NHLLSKAIHLKNFTYASLLFSHIAPHPNDYAFNIMIRALTTTWHHYPLALTLFHRMMSLS 111
Query: 215 FRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQ 274
N+ T +C A + R+ H + +L + +LI +YS+C +V A+
Sbjct: 112 LSPNNFTFPFFFLSCANLAVLSPARAAHSLVFKLALHSDPHTTHSLITMYSRCGRVAFAR 171
Query: 275 RVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICA 334
+VFD + R+LV WN+MI G+ G E +++F + G G PDE++ + V+ A
Sbjct: 172 KVFDEIPRRDLVSWNSMIAGYAKAGCAREAVEVFGEM--GRRDG--FEPDEMSLVSVLGA 227
Query: 335 CVRAELLTEGR 345
C L GR
Sbjct: 228 CGELGDLELGR 238
>gi|356519586|ref|XP_003528453.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g33760-like [Glycine max]
Length = 582
Score = 235 bits (600), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 136/475 (28%), Positives = 245/475 (51%), Gaps = 41/475 (8%)
Query: 1 MKQLLQIQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIK 60
+++L Q AHL+ +G + + T LL S GS YT +F+ +++P +F N++IK
Sbjct: 23 LRRLQQAHAHLVVTGCHRSRALLT-KLLTLSCAAGSIAYTRRLFRSVSDPDSFLFNSLIK 81
Query: 61 AYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDF 120
A SN V FY +M+ + +P++YTF S+ +CA + G + H +G
Sbjct: 82 ASSNFGFSLDAVFFYRRMLHSRIVPSTYTFTSVIKACADLSLLRLGTIVHSHVFVSGY-- 139
Query: 121 ELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMP 180
A N FVQ + +V+ + +S A ++FD MP
Sbjct: 140 --------------------ASNSFVQAA---------LVTFYAKSCTPRVARKVFDEMP 170
Query: 181 ERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRS 240
+R++++WN MISGY ++G ++++F +M +SG + T SVL+AC + + G
Sbjct: 171 QRSIIAWNSMISGYEQNGLASEAVEVFNKMRESGGEPDSATFVSVLSACSQLGSLDLGCW 230
Query: 241 VHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGK 300
+H V T ++ N++L T+L++++S+C V A+ VFDSM + N+V W AMI G+ +HG
Sbjct: 231 LHECIVGTGIRMNVVLATSLVNMFSRCGDVGRARAVFDSMNEGNVVSWTAMISGYGMHGY 290
Query: 301 PEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPN 360
E +++F + + P+ +T++ V+ AC A L+ EGR F M Y + P
Sbjct: 291 GVEAMEVFHRM-----KACGVVPNRVTYVAVLSACAHAGLINEGRLVFASMKQEYGVVPG 345
Query: 361 FAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERL 420
H+ CM +++ L EA + +R + + +W ++L C+ + +
Sbjct: 346 VEHHVCMVDMFGRGGLLNEAYQFVRGLSSEE----LVPAVWTAMLGACKMHKNFDLGVEV 401
Query: 421 AKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLK 475
A++ + +P++ Y L N+YA+AG+ + V VR +M +R + + G +D++
Sbjct: 402 AENLISAEPENPGHYVLLSNMYALAGRMDRVESVRNVMIQRGLKKQVGYSTIDVE 456
>gi|356570151|ref|XP_003553254.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g21065-like [Glycine max]
Length = 465
Score = 235 bits (600), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 144/476 (30%), Positives = 234/476 (49%), Gaps = 47/476 (9%)
Query: 1 MKQLLQIQAHLITSGLFFNNSFWTINLLKHSA--DFGSPDYTVLVFKCINNPGTFCVNAV 58
+ QL Q+ A +I S + + F L A FG +F P +F N +
Sbjct: 31 LDQLKQVHAQMIVSAVVATDPFAASRLFFSCALSPFGDLSLAFRIFHSTPRPNSFMWNTL 90
Query: 59 IKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGV 118
I+A +++ + Y+ M ++ +P +TF L +CA+ H +K G+
Sbjct: 91 IRAQTHA---PHALSLYVAMRRSNVLPGKHTFPFLLKACARVRSFTASQQVHVHVIKFGL 147
Query: 119 DFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDI 178
DF+ V+++L+ Y VSGH S A ++FD
Sbjct: 148 DFDSHVVDALVRCYS--------------------------VSGHCVS-----ARQVFDE 176
Query: 179 MPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEG 238
PE+ W M+ GY+++ +L+LF +M+ GF T+ASVL+AC RS G
Sbjct: 177 TPEKISSLWTTMVCGYAQNFCSNEALRLFEDMVGEGFEPGGATLASVLSACARSGCLELG 236
Query: 239 RSVHGY--TVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHC 296
+H + L +IL TAL+ +Y+K ++ +A+R+FD M +RN+V WNAMI G
Sbjct: 237 ERIHEFMKVKGVGLGEGVILGTALVYMYAKNGEIAMARRLFDEMPERNVVTWNAMICGLG 296
Query: 297 IHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYK 356
+G ++ + LF + G + P+ +TF+GV+ AC A L+ GR+ FR M Y
Sbjct: 297 AYGYVDDALGLFEKMKKE----GVVVPNGVTFVGVLSACCHAGLIDVGREIFRSMKSVYG 352
Query: 357 IKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAM 416
I+P HY C+ +L EA E+++ MP D ++ +LL+ R G +
Sbjct: 353 IEPKIEHYGCLVDLLGRGGWLLEAVELVKGMPWKAD-----VVILGTLLAASRISGNTEV 407
Query: 417 VERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLV 472
ER+ K + ++PQ+ + L N+YA AGQW++V R+R+ MK+ R+ + PG LV
Sbjct: 408 AERVVKDILALEPQNHGVHVALSNMYAEAGQWQEVLRLRKTMKEERLKKAPGWSLV 463
>gi|359488803|ref|XP_002272525.2| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g09950 [Vitis vinifera]
Length = 1291
Score = 235 bits (600), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 143/481 (29%), Positives = 234/481 (48%), Gaps = 42/481 (8%)
Query: 4 LLQIQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAYS 63
L + A + GL +++ T + + F D +VF+ I NP +F N +I+ ++
Sbjct: 736 LKKTHAKIFAYGLQYDSRILTKFAIMY-VSFNRIDAASIVFEDIPNPCSFLWNVMIRGFA 794
Query: 64 NSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELP 123
+ Y +M++ G P+ + F SCA ++RG + H + G +L
Sbjct: 795 TDGRFLSSLELYSKMMEKGLKPDKFAFPFALKSCAGLSDLQRGKVIHQHLVCCGCSNDLF 854
Query: 124 VMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERN 183
V +L++MY + GD+ AA +FD M R+
Sbjct: 855 VDAALVDMYA-------------------------------KCGDIEAARLVFDKMAVRD 883
Query: 184 VVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHG 243
+VSW MISGY+ +G +L F M SG N ++ SVL ACG +G H
Sbjct: 884 LVSWTSMISGYAHNGYNSETLGFFDLMRSSGVIPNRVSILSVLLACGNLGALRKGEWFHS 943
Query: 244 YTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEE 303
Y ++T + +I++ TA++D+YSKC +++A+ +FD A ++LVCW+AMI + IHG +
Sbjct: 944 YVIQTGFEFDILVATAIMDMYSKCGSLDLARCLFDETAGKDLVCWSAMIASYGIHGHGRK 1003
Query: 304 GIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAH 363
I LF +V V P +TF V+ AC + LL EG+ YF+ M + + I ++
Sbjct: 1004 AIDLFDQMVKAGV-----RPSHVTFTCVLSACSHSGLLEEGKMYFQLMTEEFVIARKLSN 1058
Query: 364 YWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKS 423
Y CM +L A EA +++ MP + D + +W SLL CR + + E++A
Sbjct: 1059 YACMVDLLGRAGQLSEAVDLIENMPVEPD-----ASIWGSLLGACRIHNNLDLAEKIADH 1113
Query: 424 FVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLKEVVEKLKV 483
+DP + L N+YA +W +V +VR++M +R ++ G LV+ V K V
Sbjct: 1114 LFHLDPVHAGYHVLLSNIYAAKSRWNEVEKVRKMMARRGANKIQGFSLVEYDNQVHKFGV 1173
Query: 484 G 484
G
Sbjct: 1174 G 1174
Score = 220 bits (560), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 134/478 (28%), Positives = 239/478 (50%), Gaps = 45/478 (9%)
Query: 3 QLLQIQAHLITSGLF----FNNSFWTIN-LLKHSADFGSPDYTVLVFKCINNPGTFCVNA 57
QLL ++A GL F+ +N LL A G +F + +
Sbjct: 218 QLLNVKAGSCVHGLVIRREFDGDLPLVNSLLNLYAKTGCEKIAANLFSKMPEKDVISWST 277
Query: 58 VIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNG 117
+I Y+N+ ++ + + +MI+ F PNS T VS +CA + +E G H +A+ G
Sbjct: 278 MIACYANNEAANEALNLFHEMIEKRFEPNSVTVVSALQACAVSRNLEEGKKIHKIAVWKG 337
Query: 118 VDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFD 177
+ + V +LI+MY M C+ P + + +LF
Sbjct: 338 FELDFSVSTALIDMY-----MKCS-------CPDEAV-------------------DLFQ 366
Query: 178 IMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNE 237
+P+++VVSW ++SGY+++G S+ +FR M+ G + + + +L A F +
Sbjct: 367 RLPKKDVVSWVALLSGYAQNGMAYKSMGVFRNMLSDGIQPDAVAVVKILAASSELGIFQQ 426
Query: 238 GRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCI 297
+HGY VR+ N+ + +LI+LYSKC + A ++F M R++V W++MI + I
Sbjct: 427 ALCLHGYVVRSGFNSNVFVGASLIELYSKCGSLGDAVKLFKGMIVRDVVIWSSMIAAYGI 486
Query: 298 HGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKI 357
HG+ E +++F +V + ++ P+ +TF+ ++ AC A L+ EG K F +M+ Y++
Sbjct: 487 HGRGGEALEIFDQMVKNS----TVRPNNVTFLSILSACSHAGLVEEGLKIFDRMVHDYQL 542
Query: 358 KPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMV 417
+P+ H+ M +L +A +I+ +MP + +W +LL CR + M
Sbjct: 543 RPDSEHFGIMVDLLGRIGQLGKAMDIINRMP-----IPAGPHVWGALLGACRIHHNIEMG 597
Query: 418 ERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLK 475
E AK+ +DP Y L N+YAV G+W++VA +R +K+R + +M G +V+++
Sbjct: 598 EAAAKNLFWLDPSHAGYYILLSNIYAVDGKWDNVAELRTRIKERGLKKMFGQSMVEVR 655
Score = 113 bits (283), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 86/407 (21%), Positives = 183/407 (44%), Gaps = 45/407 (11%)
Query: 2 KQLLQIQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKA 61
+ + Q+ + + +G+ +++F+ L A S VF +P N+ +++
Sbjct: 18 RSVSQLHSQVFKTGIL-HDTFFATKLNSLYAKCASLQAARKVFDETPHPNVHLWNSTLRS 76
Query: 62 YSNSCVPDQGV-VFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDF 120
Y ++ + +F+L + G P+++T +CA +E G + HG A KN
Sbjct: 77 YCREKQWEETLRLFHLMICTAGEAPDNFTIPIALKACAGLRMLELGKVIHGFAKKND--- 133
Query: 121 ELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMP 180
+ +MFV +++V + + G M A ++F+
Sbjct: 134 ------------------EIGSDMFVG---------SALVELYSKCGQMGEALKVFEEFQ 166
Query: 181 ERNVVSWNIMISGYSKSGNPGCSLKLFREM-MKSGFRGNDKTMASVLTACGRSARFNEGR 239
+ V W M++GY ++ +P +L LF +M M + T+ SV++AC + G
Sbjct: 167 RPDTVLWTSMVTGYQQNNDPEEALALFSQMVMMDCVVLDPVTLVSVVSACAQLLNVKAGS 226
Query: 240 SVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHG 299
VHG +R ++ L +L++LY+K ++A +F M +++++ W+ MI + +
Sbjct: 227 CVHGLVIRREFDGDLPLVNSLLNLYAKTGCEKIAANLFSKMPEKDVISWSTMIACYANNE 286
Query: 300 KPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKP 359
E + LF ++ P+ +T + + AC + L EG+K + + + +
Sbjct: 287 AANEALNLFHEMIE-----KRFEPNSVTVVSALQACAVSRNLEEGKKIHKIAV-WKGFEL 340
Query: 360 NFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLS 406
+F+ + ++Y +EA ++ +++P+ + + WV+LLS
Sbjct: 341 DFSVSTALIDMYMKCSCPDEAVDLFQRLPKK------DVVSWVALLS 381
Score = 55.5 bits (132), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 55/113 (48%), Gaps = 7/113 (6%)
Query: 236 NEGRSV---HGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMI 292
N GRSV H +T + + T L LY+KC ++ A++VFD N+ WN+ +
Sbjct: 15 NNGRSVSQLHSQVFKTGILHDTFFATKLNSLYAKCASLQAARKVFDETPHPNVHLWNSTL 74
Query: 293 LGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGR 345
+C + EE ++LF ++ AG +PD T + AC +L G+
Sbjct: 75 RSYCREKQWEETLRLFHLMI--CTAGE--APDNFTIPIALKACAGLRMLELGK 123
>gi|357484833|ref|XP_003612704.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355514039|gb|AES95662.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 572
Score = 235 bits (600), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 142/484 (29%), Positives = 251/484 (51%), Gaps = 45/484 (9%)
Query: 1 MKQLLQIQAHLITSGLFFNNSFWTINLLKHSA--DFGSPDYTVLVFKCINNPGTFCVNAV 58
M++ Q+ AH++ G+FF+ +F NL+ A +GS DY +F I+ P +F N +
Sbjct: 11 MEEFKQVHAHVLKCGIFFD-TFCMSNLVATCALTKWGSMDYACSIFTQIDEPSSFDYNTM 69
Query: 59 IKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGV 118
I+ N ++ ++ Y+ MI+ G P+ +T+ + +C+ G V+ G HG K G+
Sbjct: 70 IRGNVNDMKLEEALLLYVDMIERGVEPDKFTYPFVLKACSLLGVVDEGIQVHGHVFKMGL 129
Query: 119 DFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDI 178
+ ++ V NSLINMYG G + A ++F M + + SW++I+ H
Sbjct: 130 EGDVIVQNSLINMYGKCGEIKNACDVFNGMDEKSVASWSAIIGAHA-------------- 175
Query: 179 MPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEG 238
V WN C + L + + R + T+ +VL+AC + G
Sbjct: 176 ----CVEMWN------------ECLMLLGKMSSEGRCRVEESTLVNVLSACTHLGSPDLG 219
Query: 239 RSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIH 298
+ +HG +R + N+++ T+LID+Y K +E RVF +M+++N + MI G IH
Sbjct: 220 KCIHGILLRNISELNVVVKTSLIDMYVKSGCLEKGLRVFKNMSEKNRYSYTVMISGLAIH 279
Query: 299 GKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIK 358
G+ +E +K+F+ ++ +A PD++ ++GV AC A L+ EG + F+ M +KI+
Sbjct: 280 GRGKEALKVFSEMIEEGLA-----PDDVVYVGVFSACSHAGLVEEGLQCFKSMQFEHKIE 334
Query: 359 PNFAHYWCMANLYAGAELTEEAEEILRKMP-EDNDNMSFESIMWVSLLSLCRFQGAVAMV 417
P HY CM +L + +EA E+++ M + ND ++W SLLS C+ + +
Sbjct: 335 PTVQHYGCMVDLLGRFGMLKEAYELIKSMSIKPND------VIWRSLLSACKVHHNLEIG 388
Query: 418 ERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLKEV 477
+ A++ ++ + Y L N+YA A +W+DVA++R + +R + + PG L++ K
Sbjct: 389 KIAAENLFMLNQNNSGDYLVLANMYAKAQKWDDVAKIRTKLAERNLVQTPGFSLIEAKRK 448
Query: 478 VEKL 481
V K
Sbjct: 449 VYKF 452
>gi|356519174|ref|XP_003528249.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g18485-like [Glycine max]
Length = 975
Score = 235 bits (599), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 131/428 (30%), Positives = 231/428 (53%), Gaps = 41/428 (9%)
Query: 56 NAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALK 115
NA+I A++ + P + + +L M+ +G P+ +T SL +CA+ + G HG L+
Sbjct: 471 NALIGAHAQNGFPGKSLDLFLVMMDSGMDPDRFTIGSLLLACARLKFLRCGKEIHGFMLR 530
Query: 116 NGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHEL 175
NG++ + + SL+++Y I +S++ G + +
Sbjct: 531 NGLELDEFIGISLMSLY---------------------IQCSSMLLGKL----------I 559
Query: 176 FDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARF 235
FD M +++V WN+MI+G+S++ P +L FR+M+ G + + + VL AC + +
Sbjct: 560 FDKMENKSLVCWNVMITGFSQNELPCEALDTFRQMLSGGIKPQEIAVTGVLGACSQVSAL 619
Query: 236 NEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGH 295
G+ VH + ++ L + + ALID+Y+KC +E +Q +FD + +++ WN +I G+
Sbjct: 620 RLGKEVHSFALKAHLSEDAFVTCALIDMYAKCGCMEQSQNIFDRVNEKDEAVWNVIIAGY 679
Query: 296 CIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFY 355
IHG + I+LF + N GG PD TF+GV+ AC A L+TEG KY QM + Y
Sbjct: 680 GIHGHGLKAIELFELMQN---KGG--RPDSFTFLGVLIACNHAGLVTEGLKYLGQMQNLY 734
Query: 356 KIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVA 415
+KP HY C+ ++ A EA +++ +MP++ D S +W SLLS CR G +
Sbjct: 735 GVKPKLEHYACVVDMLGRAGQLTEALKLVNEMPDEPD-----SGIWSSLLSSCRNYGDLE 789
Query: 416 MVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLK 475
+ E ++K ++++P Y L N+YA G+W++V +VR+ MK+ + + GC +++
Sbjct: 790 IGEEVSKKLLELEPNKAENYVLLSNLYAGLGKWDEVRKVRQRMKENGLHKDAGCSWIEIG 849
Query: 476 EVVEKLKV 483
+V + V
Sbjct: 850 GMVYRFLV 857
Score = 131 bits (329), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 95/333 (28%), Positives = 155/333 (46%), Gaps = 40/333 (12%)
Query: 18 FNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAYS-NSCVPDQGVVFYL 76
F+++F L+ G + V VF+ + N N+V+ A S N + VF
Sbjct: 227 FSDAFVGNALIAMYGKCGFVESAVKVFETMRNRNLVSWNSVMYACSENGGFGECCGVFKR 286
Query: 77 QMI--KNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGC 134
+I + G +P+ T V++ +CA G V G + HGLA K G+ E+ V NSL++MY
Sbjct: 287 LLISEEEGLVPDVATMVTVIPACAAVGEVRMGMVVHGLAFKLGITEEVTVNNSLVDMYS- 345
Query: 135 FGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGY 194
+ G + A LFD+ +NVVSWN +I GY
Sbjct: 346 ------------------------------KCGYLGEARALFDMNGGKNVVSWNTIIWGY 375
Query: 195 SKSGNPGCSLKLFREMMKS-GFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPN 253
SK G+ +L +EM + R N+ T+ +VL AC + + +HGY R +
Sbjct: 376 SKEGDFRGVFELLQEMQREEKVRVNEVTVLNVLPACSGEHQLLSLKEIHGYAFRHGFLKD 435
Query: 254 IILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVN 313
++ A + Y+KC ++ A+RVF M + + WNA+I H +G P + + LF +++
Sbjct: 436 ELVANAFVAAYAKCSSLDCAERVFCGMEGKTVSSWNALIGAHAQNGFPGKSLDLFLVMMD 495
Query: 314 GTVAGGSISPDEITFIGVICACVRAELLTEGRK 346
+ PD T ++ AC R + L G++
Sbjct: 496 -----SGMDPDRFTIGSLLLACARLKFLRCGKE 523
Score = 121 bits (303), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 68/242 (28%), Positives = 124/242 (51%), Gaps = 6/242 (2%)
Query: 151 RDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREM 210
+D + N+ V+ + + + A +F M + V SWN +I ++++G PG SL LF M
Sbjct: 434 KDELVANAFVAAYAKCSSLDCAERVFCGMEGKTVSSWNALIGAHAQNGFPGKSLDLFLVM 493
Query: 211 MKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKV 270
M SG + T+ S+L AC R G+ +HG+ +R L+ + + +L+ LY +C +
Sbjct: 494 MDSGMDPDRFTIGSLLLACARLKFLRCGKEIHGFMLRNGLELDEFIGISLMSLYIQCSSM 553
Query: 271 EVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIG 330
+ + +FD M +++LVCWN MI G + P E + F +++ G I P EI G
Sbjct: 554 LLGKLIFDKMENKSLVCWNVMITGFSQNELPCEALDTFRQMLS-----GGIKPQEIAVTG 608
Query: 331 VICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPED 390
V+ AC + L G++ + + + F + ++YA E+++ I ++ E
Sbjct: 609 VLGACSQVSALRLGKEVHSFALKAHLSEDAFV-TCALIDMYAKCGCMEQSQNIFDRVNEK 667
Query: 391 ND 392
++
Sbjct: 668 DE 669
Score = 108 bits (271), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 88/373 (23%), Positives = 158/373 (42%), Gaps = 44/373 (11%)
Query: 6 QIQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSNS 65
++ A + S N+ + ++ + GSP + VF F NA++ YS +
Sbjct: 113 KVHALVSASHKLRNDVVLSTRIIAMYSACGSPSDSRGVFDAAKEKDLFLYNALLSGYSRN 172
Query: 66 CVPDQGVVFYLQMIK-NGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPV 124
+ + +L+++ P+++T + +CA VE G H LALK G + V
Sbjct: 173 ALFRDAISLFLELLSATDLAPDNFTLPCVAKACAGVADVELGEAVHALALKAGGFSDAFV 232
Query: 125 MNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNV 184
N+LI MYG + G + +A ++F+ M RN+
Sbjct: 233 GNALIAMYG-------------------------------KCGFVESAVKVFETMRNRNL 261
Query: 185 VSWNIMISGYSKSGNPGCSLKLFREMMKS---GFRGNDKTMASVLTACGRSARFNEGRSV 241
VSWN ++ S++G G +F+ ++ S G + TM +V+ AC G V
Sbjct: 262 VSWNSVMYACSENGGFGECCGVFKRLLISEEEGLVPDVATMVTVIPACAAVGEVRMGMVV 321
Query: 242 HGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKP 301
HG + + + ++ +L+D+YSKC + A+ +FD +N+V WN +I G+ G
Sbjct: 322 HGLAFKLGITEEVTVNNSLVDMYSKCGYLGEARALFDMNGGKNVVSWNTIIWGYSKEGDF 381
Query: 302 EEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNF 361
+L + + +E+T + V+ AC L ++ I Y + F
Sbjct: 382 RGVFELLQEMQREE----KVRVNEVTVLNVLPACSGEHQLLSLKE-----IHGYAFRHGF 432
Query: 362 AHYWCMANLYAGA 374
+AN + A
Sbjct: 433 LKDELVANAFVAA 445
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 87/458 (18%), Positives = 186/458 (40%), Gaps = 82/458 (17%)
Query: 6 QIQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSNS 65
+I ++ +GL + F I+L+ S L+F + N C N +I +S +
Sbjct: 523 EIHGFMLRNGLELD-EFIGISLMSLYIQCSSMLLGKLIFDKMENKSLVCWNVMITGFSQN 581
Query: 66 CVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVM 125
+P + + + QM+ G P + G+C++ + G H ALK + + V
Sbjct: 582 ELPCEALDTFRQMLSGGIKPQEIAVTGVLGACSQVSALRLGKEVHSFALKAHLSEDAFVT 641
Query: 126 NSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVV 185
+LI+MY G M+ ++N+F +++ +D WN I++G+ G A ELF++M +
Sbjct: 642 CALIDMYAKCGCMEQSQNIFDRVNEKDEAVWNVIIAGYGIHGHGLKAIELFELMQNK--- 698
Query: 186 SWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYT 245
G R + T VL AC + EG G
Sbjct: 699 ----------------------------GGRPDSFTFLGVLIACNHAGLVTEGLKYLGQM 730
Query: 246 VRT-SLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEG 304
+KP + ++D+ + ++ A ++ + M D
Sbjct: 731 QNLYGVKPKLEHYACVVDMLGRAGQLTEALKLVNEMPDE--------------------- 769
Query: 305 IKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFA-H 363
PD + ++ +C L G + +++++ ++PN A +
Sbjct: 770 ------------------PDSGIWSSLLSSCRNYGDLEIGEEVSKKLLE---LEPNKAEN 808
Query: 364 YWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLC-RF---QGAVAMVER 419
Y ++NLYAG +E ++ ++M E+ + W+ + + RF G+++ ++
Sbjct: 809 YVLLSNLYAGLGKWDEVRKVRQRMKENGLHKD-AGCSWIEIGGMVYRFLVSDGSLSESKK 867
Query: 420 LAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVREL 457
+ ++++ ++ + S+ + + V + E+ +++ L
Sbjct: 868 IQQTWIKLEKK-ISKIGYKPDTSCVLHELEEEGKIKIL 904
Score = 59.7 bits (143), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 39/144 (27%), Positives = 70/144 (48%), Gaps = 9/144 (6%)
Query: 197 SGNPGCSLKLFREMMKSGFRGND----KTMASVLTACGRSARFNEGRSVHGY-TVRTSLK 251
SGN +L L ++G + + + +L ACG + GR VH + L+
Sbjct: 66 SGNLNDALNLLHSHAQNGTVSSSDISKEAIGILLRACGHHKNIHVGRKVHALVSASHKLR 125
Query: 252 PNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTAL 311
+++L T +I +YS C ++ VFD+ +++L +NA++ G+ + + I LF L
Sbjct: 126 NDVVLSTRIIAMYSACGSPSDSRGVFDAAKEKDLFLYNALLSGYSRNALFRDAISLFLEL 185
Query: 312 VNGTVAGGSISPDEITFIGVICAC 335
++ T ++PD T V AC
Sbjct: 186 LSAT----DLAPDNFTLPCVAKAC 205
>gi|357119550|ref|XP_003561500.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
chloroplastic-like [Brachypodium distachyon]
Length = 892
Score = 235 bits (599), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 140/486 (28%), Positives = 248/486 (51%), Gaps = 16/486 (3%)
Query: 2 KQLLQIQAHLITSGLF-FNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIK 60
++ ++ A ++ +GL + L + A G D ++ + + +P + I
Sbjct: 303 RRAAELHAAVLRTGLLDATDRAVAFRLQRAYAASGRLDLSLALLRRTRDPTAIFYTSAIH 362
Query: 61 AYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDF 120
A+S+ + M+ G +P ++T + +C + G HG A K +
Sbjct: 363 AHSSRGHRLPALALLSDMLAQGLLPTAHTLSASLPACRG---LSPGRALHGYAFKLALAG 419
Query: 121 ELPVMNSLINMYGCFGAMDCARNMFVQMSPR-DLISWNSIVSGHVRSGDMSAAHELFDIM 179
+ V +L+ MY G AR +F M P ++S ++++ + G + A LFD +
Sbjct: 420 DSYVATALLGMYARAGDATAARALFDDMLPDPHVVSVTAMLTCYADMGALDDARSLFDGL 479
Query: 180 PERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGR 239
P ++ V WN MI GY++ G P +L+LFR M+ SG ++ T+ VL+A + G+
Sbjct: 480 PTKDFVCWNAMIDGYTQHGRPNEALRLFRRMLGSGVEPDEVTVVLVLSAVAQLGTVESGK 539
Query: 240 SVHGYTVRT-SLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIH 298
+H Y + ++ ++ + TALID+Y KC + A VF + D+++V WNAMI G+ +H
Sbjct: 540 WLHSYVKNSRRVQLSVRVGTALIDMYCKCGSLGDAVDVFHGIGDKDIVVWNAMINGYAMH 599
Query: 299 GKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIK 358
G + +++F V G + P +ITFIG++ AC + ++ EGR++F+ M Y I
Sbjct: 600 GDSRKALEMF---VQSREQG--LWPTDITFIGLLNACSHSGMVEEGREFFQSMEREYGID 654
Query: 359 PNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVE 418
P HY CM +L A L +EA +++ M ++ +++MWVSLL+ CR +++ +
Sbjct: 655 PKIEHYGCMVDLLGRAGLIKEAFCLVQSM-----KITPDAVMWVSLLAACRLHKNMSLGQ 709
Query: 419 RLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLKEVV 478
++A V + Y L N+YA G W +VARVR +MK + + PGC +++ V
Sbjct: 710 QIADYLVAKGLANSGMYILLSNIYAAVGNWGEVARVRSMMKASGIQKEPGCSSIEIDREV 769
Query: 479 EKLKVG 484
+ G
Sbjct: 770 YEFVAG 775
>gi|225451356|ref|XP_002275085.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04750,
mitochondrial-like [Vitis vinifera]
Length = 654
Score = 235 bits (599), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 127/483 (26%), Positives = 245/483 (50%), Gaps = 14/483 (2%)
Query: 1 MKQLLQIQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIK 60
+ Q++QI H I +G F+ + L+K + VF+ + P N +I
Sbjct: 143 LSQVMQIHCHAIITGSFYYG-YLQNTLMKIYLENEKMGLAYQVFQQMAAPDAVSFNIMIF 201
Query: 61 AYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGV-- 118
Y+ + + F +M+ G P+ +T + L C + G + G H + G+
Sbjct: 202 GYAKKGHNIEALKFLHEMVGLGLKPDEFTMLGLLICCGRLGDAQLGKSVHAWIERRGLIK 261
Query: 119 DFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDI 178
L + N+L++MY + A+++F + +D ISWN++++G+ + G++ AH F+
Sbjct: 262 SSNLILNNALLDMYVKCKELRIAQSIFNVIVRKDTISWNTMIAGYAKVGNLEIAHNFFED 321
Query: 179 MPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEG 238
MP R++VSWN +I+GY++ G+ +LF M+ + T+ ++++A + G
Sbjct: 322 MPCRDLVSWNSIIAGYAQKGDCLMVQRLFENMVAENIWPDFVTIINLVSAAAEIGALHHG 381
Query: 239 RSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIH 298
R +HG+ VR +K + L +A ID+Y KC ++ A VF + ++++ W MI G H
Sbjct: 382 RWIHGWVVRMQMKIDAFLGSAFIDMYWKCGSIKRACMVFREVTEKDVTVWTTMITGFAFH 441
Query: 299 GKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIK 358
G + ++LF + + P+++TF+ V+ AC + +++G + F M + Y I+
Sbjct: 442 GYGSKALQLFYEMQE------YVMPNQVTFVAVLTACSHSGFVSQGLRIFNSMKERYGIE 495
Query: 359 PNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVE 418
P HY C+ +L + E ++++ MP M +W ++LS CR G + + E
Sbjct: 496 PGVEHYGCLVDLLGRSGRFSEVKDVIEMMP-----MKPSRSIWGAVLSACRAYGNIEIAE 550
Query: 419 RLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLKEVV 478
K + ++P+ Y L N+YA +G+W+ ++RE+M+ R + + GC V + ++
Sbjct: 551 IAGKELLKLEPEKEGGYVLLSNIYATSGRWKHSDKIREIMESRGVKKTAGCSSVVVDGII 610
Query: 479 EKL 481
+
Sbjct: 611 HEF 613
Score = 106 bits (264), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 113/480 (23%), Positives = 191/480 (39%), Gaps = 96/480 (20%)
Query: 38 DYTVLVFKC-INNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGS 96
D VL+F+ +P + N +I A S S +Q FY ++ + PN TF+ L +
Sbjct: 82 DMAVLLFRHHTPHPNLYIYNTMISALSLSL--NQSFAFYNSLLSSCIYPNRSTFLFLLQA 139
Query: 97 CAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISW 156
V + H A+ G + + N+L+ +Y M A +F QM+ D +S
Sbjct: 140 SKFLSQVMQ---IHCHAIITGSFYYGYLQNTLMKIYLENEKMGLAYQVFQQMAAPDAVS- 195
Query: 157 NSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFR 216
+NIMI GY+K G+ +LK EM+ G +
Sbjct: 196 ------------------------------FNIMIFGYAKKGHNIEALKFLHEMVGLGLK 225
Query: 217 GNDKTMASVLTACGRSARFNEGRSVHGYTVRTSL--KPNIILDTALIDLYSKCQKVEVAQ 274
++ TM +L CGR G+SVH + R L N+IL+ AL+D+Y KC+++ +AQ
Sbjct: 226 PDEFTMLGLLICCGRLGDAQLGKSVHAWIERRGLIKSSNLILNNALLDMYVKCKELRIAQ 285
Query: 275 RVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALV-------NGTVAGGS------- 320
+F+ + ++ + WN MI G+ G E F + N +AG +
Sbjct: 286 SIFNVIVRKDTISWNTMIAGYAKVGNLEIAHNFFEDMPCRDLVSWNSIIAGYAQKGDCLM 345
Query: 321 ------------ISPDEITFIGVICACVRAELLTEGR------KYFRQMIDFYKIKPNFA 362
I PD +T I ++ A L GR + ID +
Sbjct: 346 VQRLFENMVAENIWPDFVTIINLVSAAAEIGALHHGRWIHGWVVRMQMKIDAFLGSAFID 405
Query: 363 HYW--------CM-------------ANLYAGAELTEEAEEILRKMPEDNDNMSFESIMW 401
YW CM + G + L+ E + + + +
Sbjct: 406 MYWKCGSIKRACMVFREVTEKDVTVWTTMITGFAFHGYGSKALQLFYEMQEYVMPNQVTF 465
Query: 402 VSLLSLCRFQGAVAMVERLAKSFVD---MDPQDFSRYQFLLNVYAVAGQWEDVARVRELM 458
V++L+ C G V+ R+ S + ++P Y L+++ +G++ +V V E+M
Sbjct: 466 VAVLTACSHSGFVSQGLRIFNSMKERYGIEP-GVEHYGCLVDLLGRSGRFSEVKDVIEMM 524
>gi|224126329|ref|XP_002329527.1| predicted protein [Populus trichocarpa]
gi|222870236|gb|EEF07367.1| predicted protein [Populus trichocarpa]
Length = 377
Score = 235 bits (599), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 122/363 (33%), Positives = 206/363 (56%), Gaps = 7/363 (1%)
Query: 131 MYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIM 190
MY G + AR +F +M +++I W S+VSG+V G++ A ELF+ P ++VV W M
Sbjct: 1 MYCKCGCLSVARKIFDEMPHKNVICWTSMVSGYVNYGELDKARELFERSPVKDVVLWTAM 60
Query: 191 ISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSL 250
I+GY + + ++ LF+EM + + + ++LT C + +G +HGY +
Sbjct: 61 INGYVQFNHFDEAVALFQEMQIQRVKPDKFVLVALLTGCAQMGALEQGTWIHGYIDEKGI 120
Query: 251 KPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTA 310
+ ++ T+LI++YSKC +E A R+F + +++ W ++I G ++GK + ++LF+
Sbjct: 121 PVDAVVGTSLIEMYSKCGCIEKALRIFCGLREKDTATWTSIICGLAMNGKTSKALELFSK 180
Query: 311 LVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANL 370
+ PDE+TFIGV+ AC L+ EGR++F M Y I+P HY C+ +L
Sbjct: 181 MKQVEAI-----PDEVTFIGVLSACSHGGLVEEGREFFNSMTSIYNIEPKLEHYGCLIDL 235
Query: 371 YAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQ 430
A +EAEE+++K+ N+ + ++ SLLS CR V M ER+A+ V ++ +
Sbjct: 236 LGRAGQLDEAEELIKKIVNANNEIIVP--LYGSLLSACRIYKNVQMGERVAEQLVKIESR 293
Query: 431 DFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLKEVVEKLKVGHFWRGG 490
D S + L N+YA AG+W DV RVR MK + ++PGC +++ +V + VG+
Sbjct: 294 DSSVHTLLANIYASAGRWVDVNRVRREMKDLGVKKVPGCSSIEVDGIVHEFLVGNPSCSE 353
Query: 491 MKE 493
M+E
Sbjct: 354 MRE 356
Score = 75.1 bits (183), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 59/263 (22%), Positives = 105/263 (39%), Gaps = 33/263 (12%)
Query: 23 WTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNG 82
WT +++ ++G D +F+ A+I Y D+ V + +M
Sbjct: 26 WT-SMVSGYVNYGELDKARELFERSPVKDVVLWTAMINGYVQFNHFDEAVALFQEMQIQR 84
Query: 83 FMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCAR 142
P+ + V+L CA+ G +E+G HG + G+ + V SLI MY G ++ A
Sbjct: 85 VKPDKFVLVALLTGCAQMGALEQGTWIHGYIDEKGIPVDAVVGTSLIEMYSKCGCIEKAL 144
Query: 143 NMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGC 202
+F + +D +W SI+ G +G S A ELF M + +
Sbjct: 145 RIFCGLREKDTATWTSIICGLAMNGKTSKALELFSKMKQVEAIP---------------- 188
Query: 203 SLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRS-VHGYTVRTSLKPNIILDTALI 261
++ T VL+AC EGR + T +++P + LI
Sbjct: 189 ---------------DEVTFIGVLSACSHGGLVEEGREFFNSMTSIYNIEPKLEHYGCLI 233
Query: 262 DLYSKCQKVEVAQRVFDSMADRN 284
DL + +++ A+ + + + N
Sbjct: 234 DLLGRAGQLDEAEELIKKIVNAN 256
>gi|449449306|ref|XP_004142406.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g22070-like [Cucumis sativus]
Length = 782
Score = 235 bits (599), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 135/449 (30%), Positives = 234/449 (52%), Gaps = 17/449 (3%)
Query: 56 NAVIKAYSNSCVPDQGVVFYLQMIKN-GFMPNSYTFVSLFGSCAKTGCVERGGMCHGLAL 114
N++I YS + +V + +M+ P+++T S+ +CA + G H L
Sbjct: 243 NSMISGYSQQGYNLEALVIFSKMLNEPSLKPDNFTLASILSACANLEKLNIGKQIHAYIL 302
Query: 115 KNGVDFELPVMNSLINMYGCFGAMDCARNMFVQ---MSPRDLISWNSIVSGHVRSGDMSA 171
+ + V N+LI+MY G ++ AR + V+ S ++I++ S++ G+ + G++
Sbjct: 303 RAETETSGAVGNALISMYAKSGGVEIAR-LIVEHNRTSNLNIIAFTSLLDGYTKLGNVKP 361
Query: 172 AHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGR 231
A E+F+ + +R+VV+W MI GY ++G +L+LFR M+ G N T+A++L+
Sbjct: 362 AREIFNKLRDRDVVAWTAMIVGYVQNGLWNDALELFRLMVNEGPEPNSYTLAAMLSVSSS 421
Query: 232 SARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFD-SMADRNLVCWNA 290
G+ +H ++ + ALI +Y+K + VA+RVFD + +V W +
Sbjct: 422 LTILEHGKQIHASAIKAGESSTPSVTNALIAMYAKTGNINVAKRVFDLPNGKKEIVSWTS 481
Query: 291 MILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQ 350
MI+ HG +E I LF +++ + PD IT++GV+ AC L+ +GRKY+
Sbjct: 482 MIMALAQHGLGKEAINLFERMLS-----VGMKPDHITYVGVLSACTHVGLVEQGRKYYNM 536
Query: 351 MIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRF 410
M + ++I+P +HY CM +LY A L +EA + MP + DN I W SLL+ C+
Sbjct: 537 MTEVHEIEPTLSHYACMIDLYGRAGLLQEAYLFIESMPIEPDN-----IAWGSLLASCKI 591
Query: 411 QGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCR 470
+ + A+ + +DP + Y L NVY+ G+WE+ A+ R+LMK R + + G
Sbjct: 592 HKNADLAKVAAERLLLIDPGNSGAYLALANVYSACGKWENAAQTRKLMKDRGVRKEKGIS 651
Query: 471 LVDLKEVVEKLKVGHFWRGGMKEEVNKMM 499
+ +K V V K+E+ K+M
Sbjct: 652 WIHIKNEVHAFGVEDVIH-PQKDEIYKLM 679
Score = 153 bits (387), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 89/324 (27%), Positives = 163/324 (50%), Gaps = 39/324 (12%)
Query: 57 AVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKN 116
A+I Y+ + D + + +MI P+ +T ++ SCA ++ G H +K
Sbjct: 112 AIIVGYNQFGLFDNAIWMFAKMISERVPPSQFTVSNVLSSCAANQTLDIGRKIHSFVVKL 171
Query: 117 GVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELF 176
G+ +PV SL+NMY G A+ +F +M+ +++ +WN+++S +++SG A F
Sbjct: 172 GLGSCVPVATSLLNMYAKCGDPVIAKVVFDRMTVKNISTWNALISLYMQSGQFELAASQF 231
Query: 177 DIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMM-KSGFRGNDKTMASVLTACGRSARF 235
+ MP+R++VSWN MISGYS+ G +L +F +M+ + + ++ T+AS+L+AC +
Sbjct: 232 EKMPDRDIVSWNSMISGYSQQGYNLEALVIFSKMLNEPSLKPDNFTLASILSACANLEKL 291
Query: 236 NEGRSVHGYTVRTSLKP---------------------------------NIILDTALID 262
N G+ +H Y +R + NII T+L+D
Sbjct: 292 NIGKQIHAYILRAETETSGAVGNALISMYAKSGGVEIARLIVEHNRTSNLNIIAFTSLLD 351
Query: 263 LYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSIS 322
Y+K V+ A+ +F+ + DR++V W AMI+G+ +G + ++LF +VN
Sbjct: 352 GYTKLGNVKPAREIFNKLRDRDVVAWTAMIVGYVQNGLWNDALELFRLMVN-----EGPE 406
Query: 323 PDEITFIGVICACVRAELLTEGRK 346
P+ T ++ +L G++
Sbjct: 407 PNSYTLAAMLSVSSSLTILEHGKQ 430
Score = 129 bits (325), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 92/384 (23%), Positives = 168/384 (43%), Gaps = 43/384 (11%)
Query: 106 GGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVR 165
G H +K G+ + +MN+L+ Y G++ A ++F +M + SWN+++SG+ +
Sbjct: 29 GRSVHCQIIKKGLHLGVYLMNNLMTFYAKTGSLRFAHHVFDEMPLKSTFSWNTLISGYAK 88
Query: 166 SGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASV 225
G+ + L MP+ + VSW +I GY++ G ++ +F +M+ + T+++V
Sbjct: 89 QGNFEVSRRLLYEMPDCDPVSWTAIIVGYNQFGLFDNAIWMFAKMISERVPPSQFTVSNV 148
Query: 226 LTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFD------- 278
L++C + + GR +H + V+ L + + T+L+++Y+KC +A+ VFD
Sbjct: 149 LSSCAANQTLDIGRKIHSFVVKLGLGSCVPVATSLLNMYAKCGDPVIAKVVFDRMTVKNI 208
Query: 279 ------------------------SMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNG 314
M DR++V WN+MI G+ G E + +F+ ++N
Sbjct: 209 STWNALISLYMQSGQFELAASQFEKMPDRDIVSWNSMISGYSQQGYNLEALVIFSKMLNE 268
Query: 315 TVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGA 374
S+ PD T ++ AC E L G++ I Y ++ + N
Sbjct: 269 P----SLKPDNFTLASILSACANLEKLNIGKQ-----IHAYILRAETETSGAVGNALISM 319
Query: 375 ELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSR 434
EI R + E N + I + SLL G V + F + +D
Sbjct: 320 YAKSGGVEIARLIVEHNRTSNLNIIAFTSLLDGYTKLGNVKPAREI---FNKLRDRDVVA 376
Query: 435 YQFLLNVYAVAGQWEDVARVRELM 458
+ ++ Y G W D + LM
Sbjct: 377 WTAMIVGYVQNGLWNDALELFRLM 400
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 54/259 (20%), Positives = 103/259 (39%), Gaps = 34/259 (13%)
Query: 43 VFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGC 102
+F + + A+I Y + + + + + M+ G PNSYT ++ +
Sbjct: 365 IFNKLRDRDVVAWTAMIVGYVQNGLWNDALELFRLMVNEGPEPNSYTLAAMLSVSSSLTI 424
Query: 103 VERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMF-VQMSPRDLISWNSIVS 161
+E G H A+K G V N+LI MY G ++ A+ +F + ++++SW S
Sbjct: 425 LEHGKQIHASAIKAGESSTPSVTNALIAMYAKTGNINVAKRVFDLPNGKKEIVSWTS--- 481
Query: 162 GHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKT 221
MI ++ G ++ LF M+ G + + T
Sbjct: 482 ----------------------------MIMALAQHGLGKEAINLFERMLSVGMKPDHIT 513
Query: 222 MASVLTACGRSARFNEGRSVHGYTVRT-SLKPNIILDTALIDLYSKCQKVEVAQRVFDSM 280
VL+AC +GR + ++P + +IDLY + ++ A +SM
Sbjct: 514 YVGVLSACTHVGLVEQGRKYYNMMTEVHEIEPTLSHYACMIDLYGRAGLLQEAYLFIESM 573
Query: 281 A-DRNLVCWNAMILGHCIH 298
+ + + W +++ IH
Sbjct: 574 PIEPDNIAWGSLLASCKIH 592
>gi|449435366|ref|XP_004135466.1| PREDICTED: pentatricopeptide repeat-containing protein At1g59720,
mitochondrial-like [Cucumis sativus]
Length = 605
Score = 235 bits (599), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 149/500 (29%), Positives = 254/500 (50%), Gaps = 48/500 (9%)
Query: 1 MKQLLQIQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIK 60
+ +L QI A I + N+S + + + H + DY VF I+NP +F N +I
Sbjct: 38 LSKLKQIHAQAIRNFSTHNSSLFLYSRILHVSSLIDFDYACRVFNQIDNPNSFMWNTLIG 97
Query: 61 AYSNSC-VPDQGVVFYLQMIKNGFM-PNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGV 118
A + S +Q + + +M++ G + P+ +TF L +CA + G H K G+
Sbjct: 98 ACARSLDRKEQAIEIFYRMLEEGSVEPDKHTFPFLLKACAYVFALSEGRQAHAQIFKLGL 157
Query: 119 DFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDI 178
D ++ V NSLI++Y G + S A ++F+
Sbjct: 158 DLDVYVGNSLIHLYASCGCL-------------------------------SMALKVFEK 186
Query: 179 MPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEG 238
MP R++VSWN+MI Y +SG +LKLF EM S F + TM S+++AC + G
Sbjct: 187 MPLRSLVSWNVMIDAYVQSGLFENALKLFVEMQNS-FEPDGYTMQSIVSACAGIGALSLG 245
Query: 239 RSVHGYTVRTS---LKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGH 295
H Y +R + + +++++++L+D+YSKC + +AQ+VF++M +L WN+MIL
Sbjct: 246 MWAHAYVLRKASGAMAGDVLINSSLVDMYSKCGSLRMAQQVFETMPKHDLNSWNSMILAL 305
Query: 296 CIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFY 355
+HG+ + ++ F+ LV P+ +TF+GV+ AC ++ +GRKYF M++ Y
Sbjct: 306 AMHGRGQAALQCFSRLVEME----KFLPNSVTFVGVLSACNHGGMVADGRKYFDMMVNDY 361
Query: 356 KIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGA-V 414
KI+P HY C+ +L + + +EA E++ M ++ ++++W SLL C Q A V
Sbjct: 362 KIEPRLEHYGCLVDLLSRSGFIDEALELVANM-----HIKPDAVIWRSLLDACYKQNAGV 416
Query: 415 AMVERLAKSFVDMDPQDFS-RYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVD 473
+ E +A + + S Y L VYA A QW DV +R++M + + PGC ++
Sbjct: 417 ELSEEVAFKILQSEKTISSGVYVMLSRVYASARQWNDVGIIRKVMTDMGVTKEPGCSSIE 476
Query: 474 LKEVVEKLKVGHFWRGGMKE 493
+ + + G +KE
Sbjct: 477 IDGISHEFFAGDTSHPRIKE 496
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 48/184 (26%), Positives = 84/184 (45%), Gaps = 28/184 (15%)
Query: 218 NDKTMAS----VLTACGRSARFNE--GRSVHGYTVRTS---LKPNIILDTALIDLYSKCQ 268
N KT S +LT C ++ + +++ ++ S L I+ ++LID C
Sbjct: 20 NSKTHQSRFLHLLTDCTDLSKLKQIHAQAIRNFSTHNSSLFLYSRILHVSSLIDFDYAC- 78
Query: 269 KVEVAQRVFDSMADRNLVCWNAMILGHCIHG--KPEEGIKLFTALVNGTVAGGSISPDEI 326
RVF+ + + N WN +I G C + E+ I++F ++ GS+ PD+
Sbjct: 79 ------RVFNQIDNPNSFMWNTLI-GACARSLDRKEQAIEIFYRMLE----EGSVEPDKH 127
Query: 327 TFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYW--CMANLYAGAELTEEAEEIL 384
TF ++ AC L+EGR+ Q+ +K+ + Y + +LYA A ++
Sbjct: 128 TFPFLLKACAYVFALSEGRQAHAQI---FKLGLDLDVYVGNSLIHLYASCGCLSMALKVF 184
Query: 385 RKMP 388
KMP
Sbjct: 185 EKMP 188
>gi|347954500|gb|AEP33750.1| chloroplast biogenesis 19, partial [Lepidium sativum]
Length = 494
Score = 235 bits (599), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 132/407 (32%), Positives = 212/407 (52%), Gaps = 14/407 (3%)
Query: 82 GFMPNSYTFVSLFGSCAK--TGCVERGGMCHGLALKNGVD-FELPVMNSLINMYGCFGAM 138
G PN TF+SL +C +G + HG A K G+D + V +++ MY G +
Sbjct: 63 GIEPNHITFISLLSACGNFPSGSEALSDLLHGYACKLGLDRSHVMVGTAILGMYSKRGHV 122
Query: 139 DCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSG 198
AR +F M ++ ++WN+++ G++R+G + A ++FD MPER+++SW MI+G+ K G
Sbjct: 123 RKARLVFDYMEDKNSVTWNTMIDGYMRNGQVDNAVKVFDEMPERDLISWTAMITGFVKKG 182
Query: 199 NPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDT 258
+L FREM SG + + + L AC + G H Y V + N+ +
Sbjct: 183 FHEEALAWFREMQISGVNPDYVAIIAALAACTNLGALSFGLWAHRYVVSQDFRNNVRVSN 242
Query: 259 ALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAG 318
+LIDLY +C VE A++VFD+M R +V WN++I+G +G E + F +
Sbjct: 243 SLIDLYCRCGCVEFARQVFDTMEKRTVVSWNSVIVGFAANGNANESLVYFRKMQE----- 297
Query: 319 GSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTE 378
PD +TF G + AC L+ EG +YF+ M Y+I P H+ C+ +LY+ A E
Sbjct: 298 EGFKPDAVTFTGALTACSHVGLVEEGFQYFQMMKTDYRISPRIEHFGCLVDLYSRAGRLE 357
Query: 379 EAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQG-AVAMVERLAKSFVDMDPQDFSRYQF 437
+A +++ MP M ++ SLL+ CR G + ERL K D+D + S Y
Sbjct: 358 DAIKVVESMP-----MKPNEVVIGSLLAACRNHGNHTILAERLMKHISDLDVKGHSNYVI 412
Query: 438 LLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLKEVVEKLKVG 484
L N+YA G+WE +++R MK + + PG +++ + G
Sbjct: 413 LSNMYAADGKWEGASKMRRKMKGLGLKKQPGYSSIEIDDYTHVFMAG 459
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 60/247 (24%), Positives = 100/247 (40%), Gaps = 32/247 (12%)
Query: 35 GSPDYTVLVFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLF 94
G D V VF + A+I + ++ + ++ +M +G P+ ++
Sbjct: 151 GQVDNAVKVFDEMPERDLISWTAMITGFVKKGFHEEALAWFREMQISGVNPDYVAIIAAL 210
Query: 95 GSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLI 154
+C G + G H + + V NSLI++Y G ++ AR +F M R ++
Sbjct: 211 AACTNLGALSFGLWAHRYVVSQDFRNNVRVSNSLIDLYCRCGCVEFARQVFDTMEKRTVV 270
Query: 155 SWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSG 214
SWNS+ I G++ +GN SL FR+M + G
Sbjct: 271 SWNSV-------------------------------IVGFAANGNANESLVYFRKMQEEG 299
Query: 215 FRGNDKTMASVLTACGRSARFNEG-RSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVA 273
F+ + T LTAC EG + + P I L+DLYS+ ++E A
Sbjct: 300 FKPDAVTFTGALTACSHVGLVEEGFQYFQMMKTDYRISPRIEHFGCLVDLYSRAGRLEDA 359
Query: 274 QRVFDSM 280
+V +SM
Sbjct: 360 IKVVESM 366
Score = 40.8 bits (94), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 23/95 (24%), Positives = 45/95 (47%)
Query: 12 ITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSNSCVPDQG 71
+ S F NN + +L+ G ++ VF + N+VI ++ + ++
Sbjct: 229 VVSQDFRNNVRVSNSLIDLYCRCGCVEFARQVFDTMEKRTVVSWNSVIVGFAANGNANES 288
Query: 72 VVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERG 106
+V++ +M + GF P++ TF +C+ G VE G
Sbjct: 289 LVYFRKMQEEGFKPDAVTFTGALTACSHVGLVEEG 323
>gi|225432742|ref|XP_002279134.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22690
[Vitis vinifera]
Length = 836
Score = 235 bits (599), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 134/431 (31%), Positives = 228/431 (52%), Gaps = 15/431 (3%)
Query: 56 NAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALK 115
N ++ Y+ + + + +M++ G P+ T +S + A+ + G +CHG ++
Sbjct: 302 NTILSNYARQGLAREALAILDEMLQQGPRPDRVTMLSAISASAQLVDLFYGKVCHGYVIR 361
Query: 116 NGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHEL 175
NG++ + N +I+MY G + A +F MS + ++SWNS+ +G +R+GD+ +A E+
Sbjct: 362 NGLEGWDSIGNVIIDMYMKCGKPEMACRVFDLMSNKTVVSWNSLTAGFIRNGDVESAWEV 421
Query: 176 FDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARF 235
F+ +PERN V WN MISG + +++LFREM G + + TM + +ACG
Sbjct: 422 FNQIPERNAVFWNTMISGLVQKSLFEDAIELFREMQGEGIKADRVTMMGIASACGYLGAP 481
Query: 236 NEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGH 295
+ VH Y + + ++ L+TAL+D++++C + A +VF+ M +R++ W A I
Sbjct: 482 ELAKWVHTYIEKNGIPCDMRLNTALVDMFARCGDPQSAMQVFNKMTERDVSAWTAAIGTM 541
Query: 296 CIHGKPEEGIKLFTA-LVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDF 354
+ G E LF L+ G + PD + F+ V+ AC + +G F M D
Sbjct: 542 AMEGNGEGATGLFNQMLIQG------VKPDVVLFVQVLTACSHGGQVEQGLHIFSLMED- 594
Query: 355 YKIKPNFAHYWCMANLYAGAELTEEAEEILRKMP-EDNDNMSFESIMWVSLLSLCRFQGA 413
+ I P HY CM +L A L EA ++++ MP E ND ++W SLL+ CR
Sbjct: 595 HGISPQIEHYGCMVDLLGRAGLLREAFDLIKSMPMEPND------VVWGSLLAACRVHKN 648
Query: 414 VAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVD 473
V M A+ ++ PQ + L N+YA AG+W DVARVR ++++ + ++PG V
Sbjct: 649 VEMATYAAERINELAPQRAGVHVLLSNIYASAGKWTDVARVRLNLREKGVRKVPGSSSVQ 708
Query: 474 LKEVVEKLKVG 484
+ V+ + G
Sbjct: 709 VNGVIHEFTSG 719
Score = 150 bits (379), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 95/342 (27%), Positives = 159/342 (46%), Gaps = 45/342 (13%)
Query: 1 MKQLLQIQAHLITSGLFFNNSFWTINLLKHSADFGSP---DYTVLVFKCI-----NNPGT 52
+ QL Q+ + +GL S T L+ A+ SP DY F+ ++
Sbjct: 38 LNQLKQLHCQITKNGLDQIPSTLT-KLVNAGAEIASPESLDYARKAFELFKEDVRSDDAL 96
Query: 53 FCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGL 112
F +N++I+ YS++ + + ++ Y++M+ G PN YTF + C K G HG
Sbjct: 97 FMLNSLIRGYSSAGLGREAILLYVRMLVLGVTPNHYTFPFVLSGCTKIAAFCEGIQVHGS 156
Query: 113 ALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAA 172
+K G++ ++ + N LI+ Y G MD
Sbjct: 157 VVKMGLEEDVFIQNCLIHFYAECGHMD-------------------------------HG 185
Query: 173 HELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRS 232
H++F+ M ERNVVSW +I GY++ P ++ LF EM+++G R + TM V++AC +
Sbjct: 186 HKVFEGMSERNVVSWTSLICGYARGDRPKEAVSLFFEMVEAGIRPSSVTMVCVISACAKL 245
Query: 233 ARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMI 292
+ G V Y LK N ++ AL+D+Y KC ++ A+R+FD DRNLV +N ++
Sbjct: 246 RDLDMGERVCAYIGELGLKLNKVMVNALVDMYMKCGAIDAAKRLFDECVDRNLVLYNTIL 305
Query: 293 LGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICA 334
+ G E + + ++ PD +T + I A
Sbjct: 306 SNYARQGLAREALAILDEMLQ-----QGPRPDRVTMLSAISA 342
Score = 119 bits (298), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 88/357 (24%), Positives = 156/357 (43%), Gaps = 58/357 (16%)
Query: 5 LQIQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSN 64
+Q+ ++ GL + F L+ A+ G D+ VF+ ++ ++I Y+
Sbjct: 151 IQVHGSVVKMGLE-EDVFIQNCLIHFYAECGHMDHGHKVFEGMSERNVVSWTSLICGYAR 209
Query: 65 SCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPV 124
P + V + +M++ G P+S T V + +CAK ++ G + G+ +
Sbjct: 210 GDRPKEAVSLFFEMVEAGIRPSSVTMVCVISACAKLRDLDMGERVCAYIGELGLKLNKVM 269
Query: 125 MNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNV 184
+N+L++MY GA+D AA LFD +RN+
Sbjct: 270 VNALVDMYMKCGAID-------------------------------AAKRLFDECVDRNL 298
Query: 185 VSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGY 244
V +N ++S Y++ G +L + EM++ G R + TM S ++A + G+ HGY
Sbjct: 299 VLYNTILSNYARQGLAREALAILDEMLQQGPRPDRVTMLSAISASAQLVDLFYGKVCHGY 358
Query: 245 TVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGK---- 300
+R L+ + +ID+Y KC K E+A RVFD M+++ +V WN++ G +G
Sbjct: 359 VIRNGLEGWDSIGNVIIDMYMKCGKPEMACRVFDLMSNKTVVSWNSLTAGFIRNGDVESA 418
Query: 301 -------PEEGIKLFTALVNGTV---------------AGGSISPDEITFIGVICAC 335
PE + +++G V G I D +T +G+ AC
Sbjct: 419 WEVFNQIPERNAVFWNTMISGLVQKSLFEDAIELFREMQGEGIKADRVTMMGIASAC 475
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 50/261 (19%), Positives = 95/261 (36%), Gaps = 32/261 (12%)
Query: 43 VFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGC 102
VF I N +I + + + + +M G + T + + +C G
Sbjct: 421 VFNQIPERNAVFWNTMISGLVQKSLFEDAIELFREMQGEGIKADRVTMMGIASACGYLGA 480
Query: 103 VERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSG 162
E H KNG+ ++ + +L++M+ G A +F +M+ RD+ +W + +
Sbjct: 481 PELAKWVHTYIEKNGIPCDMRLNTALVDMFARCGDPQSAMQVFNKMTERDVSAWTAAI-- 538
Query: 163 HVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTM 222
G M+ GN + LF +M+ G + +
Sbjct: 539 ----GTMAM-------------------------EGNGEGATGLFNQMLIQGVKPDVVLF 569
Query: 223 ASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMA- 281
VLTAC + +G + + P I ++DL + + A + SM
Sbjct: 570 VQVLTACSHGGQVEQGLHIFSLMEDHGISPQIEHYGCMVDLLGRAGLLREAFDLIKSMPM 629
Query: 282 DRNLVCWNAMILGHCIHGKPE 302
+ N V W +++ +H E
Sbjct: 630 EPNDVVWGSLLAACRVHKNVE 650
>gi|296080932|emb|CBI18728.3| unnamed protein product [Vitis vinifera]
Length = 607
Score = 235 bits (599), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 142/495 (28%), Positives = 241/495 (48%), Gaps = 39/495 (7%)
Query: 1 MKQLLQIQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIK 60
+ Q+L I A LI +G + F LL+ + + DY +F+ +NP + A+I
Sbjct: 45 INQVLPIHAQLIRNG-HSQDPFMVFELLRSCSKCHAIDYASRIFQYTHNPNVYLYTALID 103
Query: 61 AYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDF 120
+ +S + Y +M+ + +P++Y S+ +C + G H ALK G+
Sbjct: 104 GFVSSGNYFDAIQLYSRMLHDSILPDNYLMASILKACGSQLALREGREVHSRALKLGLSS 163
Query: 121 ELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMP 180
V ++ +YG G + AR +F +M P D+++
Sbjct: 164 NRLVRLRIMELYGKCGELGDARRVFEEM-PEDVVA------------------------- 197
Query: 181 ERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRS 240
++ V W MI G+ ++ +L+ FR M R N+ T+ VL+AC + GR
Sbjct: 198 -KDTVCWTAMIDGFVRNEEMNRALEAFRGMQGENVRPNEFTIVCVLSACSQLGALEIGRW 256
Query: 241 VHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGK 300
VH Y + ++ N+ + ALI++YS+C ++ AQ VFD M DR+++ +N MI G ++GK
Sbjct: 257 VHSYMRKFEIELNLFVGNALINMYSRCGSIDEAQTVFDEMKDRDVITYNTMISGLSMNGK 316
Query: 301 PEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPN 360
+ I+LF ++ G + P +TF+GV+ AC L+ G K F M Y ++P
Sbjct: 317 SRQAIELFRVMI-----GRRLRPTNVTFVGVLNACSHGGLVDFGFKIFHSMTRDYGVEPQ 371
Query: 361 FAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERL 420
HY CM +L EEA +++R M M+ + IM +LLS C+ + + E++
Sbjct: 372 IEHYGCMVDLLGRVGRLEEAYDLIRTM-----KMTPDHIMLGTLLSACKMHKNLELGEQV 426
Query: 421 AKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLKEVVEK 480
AK D D Y L +VYA +G+W++ A+VR MK+ M + PGC +++ + +
Sbjct: 427 AKVLEDRGQADSGTYVLLSHVYASSGKWKEAAQVRAKMKEAGMQKEPGCSSIEVNNEIHE 486
Query: 481 LKVGHFWRGGMKEEV 495
+G R KE +
Sbjct: 487 FLLGDL-RHPRKERI 500
Score = 52.8 bits (125), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 41/193 (21%), Positives = 84/193 (43%), Gaps = 13/193 (6%)
Query: 218 NDKTMAS-----VLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEV 272
N K++ S +++ RS N+ +H +R + + L+ SKC ++
Sbjct: 23 NPKSLKSLDQKQIISLLQRSKHINQVLPIHAQLIRNGHSQDPFMVFELLRSCSKCHAIDY 82
Query: 273 AQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVI 332
A R+F + N+ + A+I G G + I+L++ +++ SI PD ++
Sbjct: 83 ASRIFQYTHNPNVYLYTALIDGFVSSGNYFDAIQLYSRMLH-----DSILPDNYLMASIL 137
Query: 333 CACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDND 392
AC L EGR+ + + + N + LY +A + +MPE D
Sbjct: 138 KACGSQLALREGREVHSRALKL-GLSSNRLVRLRIMELYGKCGELGDARRVFEEMPE--D 194
Query: 393 NMSFESIMWVSLL 405
++ +++ W +++
Sbjct: 195 VVAKDTVCWTAMI 207
>gi|347954504|gb|AEP33752.1| chloroplast biogenesis 19, partial [Lobularia maritima]
Length = 496
Score = 235 bits (599), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 138/431 (32%), Positives = 221/431 (51%), Gaps = 17/431 (3%)
Query: 82 GFMPNSYTFVSLFGSCA--KTGCVERGGMCHGLALKNGVDF-ELPVMNSLINMYGCFGAM 138
G PN TF++L C +G G + HG A K G+D + V ++I MY G +
Sbjct: 62 GVEPNHITFIALLSGCGDFSSGSESFGDLLHGYACKLGLDRNHVMVGTAIIGMYSKHGRV 121
Query: 139 DCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSG 198
AR +F M ++ ++WN+++ G++R G + A++LFD MPER ++SW MI+G+ K G
Sbjct: 122 SKARLVFDHMEGKNSMTWNTMIDGYMRKGKIDDAYKLFDEMPERGLISWTAMINGFVKKG 181
Query: 199 NPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDT 258
+L FREM SG + + +VL AC + G VH Y V + N+ ++
Sbjct: 182 FHEEALVWFREMQSSGVEPDYVAIIAVLAACTNLGALSFGLWVHRYLVSRDFRNNVRVNN 241
Query: 259 ALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAG 318
+ IDL+ +C VE+AQ VFD M R +V WN++I+ +G +E + F +
Sbjct: 242 SSIDLHCRCGCVELAQPVFDHMEKRTVVSWNSVIVVFSANGHADESLVYFRRMQE----- 296
Query: 319 GSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTE 378
P+ +TF G + AC L+ EG +YF+ M Y+I P HY C+ +LY+ A E
Sbjct: 297 EGFKPNAVTFTGALTACSHVGLVEEGLRYFQTMKKEYRISPRIEHYGCLVDLYSRAGRLE 356
Query: 379 EAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQG-AVAMVERLAKSFVDMDPQDFSRYQF 437
+A +++ MP M ++ SLL+ CR G + ERL K D + + S Y
Sbjct: 357 DALNVVQSMP-----MKPNEVVIGSLLAACRTHGNNTVLAERLMKHLSDTNVKSHSNYVI 411
Query: 438 LLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLKEVVEKLKVG---HFWRGGMKEE 494
L N+YA G+WE +++R MK + + PG +++ + G H G ++E
Sbjct: 412 LSNMYAADGKWEGASKMRRKMKGLGLKKQPGFSSIEIDDCTHVFMAGDSAHVETGYIREV 471
Query: 495 VNKMMECRQSR 505
+ + QS+
Sbjct: 472 LEILSSDMQSQ 482
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 59/247 (23%), Positives = 99/247 (40%), Gaps = 32/247 (12%)
Query: 35 GSPDYTVLVFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLF 94
G D +F + G A+I + ++ +V++ +M +G P+ +++
Sbjct: 150 GKIDDAYKLFDEMPERGLISWTAMINGFVKKGFHEEALVWFREMQSSGVEPDYVAIIAVL 209
Query: 95 GSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLI 154
+C G + G H + + V NS I+++ G ++ A+ +F M R ++
Sbjct: 210 AACTNLGALSFGLWVHRYLVSRDFRNNVRVNNSSIDLHCRCGCVELAQPVFDHMEKRTVV 269
Query: 155 SWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSG 214
SWNS++ VV +S +G+ SL FR M + G
Sbjct: 270 SWNSVI-----------------------VV--------FSANGHADESLVYFRRMQEEG 298
Query: 215 FRGNDKTMASVLTACGRSARFNEG-RSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVA 273
F+ N T LTAC EG R + P I L+DLYS+ ++E A
Sbjct: 299 FKPNAVTFTGALTACSHVGLVEEGLRYFQTMKKEYRISPRIEHYGCLVDLYSRAGRLEDA 358
Query: 274 QRVFDSM 280
V SM
Sbjct: 359 LNVVQSM 365
>gi|255582129|ref|XP_002531859.1| Cell division protein ftsH, putative [Ricinus communis]
gi|223528509|gb|EEF30537.1| Cell division protein ftsH, putative [Ricinus communis]
Length = 1157
Score = 235 bits (599), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 150/491 (30%), Positives = 238/491 (48%), Gaps = 48/491 (9%)
Query: 1 MKQLLQIQAHLITSGLFFNNSFWTINLLKHSADFGSPD--YTVLVFKCINNPGTFCVNAV 58
+K L QI + + SGL ++F L+K S+ S D Y + +P N +
Sbjct: 677 IKHLYQIHSQIQVSGLQ-GDTFLVTQLIKFSSLSPSKDLSYAQSILDHSVHPVPLPWNIL 735
Query: 59 IKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGV 118
I+ Y++S P + Y M G PNS TF L +CA + G H +K G+
Sbjct: 736 IRGYADSNTPKDALFVYRNMRNEGIRPNSLTFPFLLKACAACFATKEGKQVHVEVIKYGL 795
Query: 119 DFELPVMNSLINMYG-CFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFD 177
D ++ V N+L+N YG C +D + +FD
Sbjct: 796 DCDVYVNNNLVNFYGSCKKILDACK--------------------------------VFD 823
Query: 178 IMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNE 237
MPER VVSWN +I+ +S G +++ F +M GF + TM +L C
Sbjct: 824 EMPERTVVSWNAVITSCVESLKLGEAIRYFLKMRDFGFEPDGTTMVLMLVICAEMGNLGL 883
Query: 238 GRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCI 297
GR +H + L N L TAL+D+Y+K V A+ VFD M ++N+ W+AMILG
Sbjct: 884 GRWIHSQVIERGLVLNYQLGTALVDMYAKSGAVGYAKLVFDRMKEKNVWTWSAMILGLAQ 943
Query: 298 HGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKI 357
HG +EG++LF ++ ++ I P+ +TF+GV+CAC A L+++G +YF +M Y I
Sbjct: 944 HGFAKEGLELFLDMMRSSL----IHPNYVTFLGVLCACSHAGLVSDGFRYFHEMGHTYGI 999
Query: 358 KPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRF---QGAV 414
KP HY M ++ A L +EA + KMP D I+W +LLS C + +
Sbjct: 1000 KPMMVHYGAMVDILGRAGLLKEAYNFITKMPFQPD-----PIVWRTLLSACSIHDVKDST 1054
Query: 415 AMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDL 474
+ ++ K ++++P+ + + N+YA AG WE A+VR +M+ + + G V+L
Sbjct: 1055 GVAYKVRKRLLELEPRRSGNFVMVANMYADAGMWEKAAKVRRVMRDGGLKKKAGESCVEL 1114
Query: 475 KEVVEKLKVGH 485
+ + G+
Sbjct: 1115 SGSIHRFFSGY 1125
>gi|302141863|emb|CBI19066.3| unnamed protein product [Vitis vinifera]
Length = 521
Score = 234 bits (598), Expect = 6e-59, Method: Compositional matrix adjust.
Identities = 147/496 (29%), Positives = 242/496 (48%), Gaps = 50/496 (10%)
Query: 7 IQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSNSC 66
+ AH+I G+F N+ F+ NLL D +F +I AYS+S
Sbjct: 25 LHAHIIKLGVF-NDVFFANNLLAMYVDISLLKDARRLFDETLERNVATWTTMISAYSSSG 83
Query: 67 VPDQGVVFYLQMIKN-GFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVM 125
PD + FY+QM+++ PN + + ++ +C G +E G + HG + + F+ +M
Sbjct: 84 RPDTALKFYVQMLESKSETPNGFLYSAVLKACGLVGDLESGKLIHGRVFRANLGFDTVLM 143
Query: 126 NSLINMY-------------------------------GCFGAMDCARNMFVQMSPRDLI 154
N+L++MY G G M+ A N+F QM D +
Sbjct: 144 NTLLDMYVKCGSLSSARKVFDDILCPSSTSWNTMISGYGKEGLMEEAVNLFYQMPEPDTV 203
Query: 155 SWNSIVSG-------HVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLF 207
SWNSI++G + G + A LF +PE+++V W+ +IS +K G LF
Sbjct: 204 SWNSIIAGFGILIDLYANDGKIKDALRLFYRLPEKDIVVWSSLISWCTKMGLNSLVFSLF 263
Query: 208 REMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKC 267
R+M+ + ++SVL AC G+ VH + V++ + I T+LIDLY+KC
Sbjct: 264 RDMVNLDIEVDQFIISSVLKACSSLVGLGSGKQVHSFCVKSGYESERITVTSLIDLYAKC 323
Query: 268 QKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEIT 327
++E +F ++R+ VC+ +I+G +G+ E + F ++ + P+EIT
Sbjct: 324 GEIEDGLALFYCTSERDTVCYTGIIMGCGQNGRAMEAVGFFQEMIE-----LGLKPNEIT 378
Query: 328 FIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKM 387
F+GV+ AC A L+ E F+ M YK++P+ HY+C+ L + A +EAEE++ +M
Sbjct: 379 FLGVLSACRHAGLVEEAWTIFKYMKTEYKMEPHIEHYYCIVELLSQAGCFKEAEELIAEM 438
Query: 388 PEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQ 447
P + D +W SLL C +V +A+ + P+D S L NVYA
Sbjct: 439 PFEPDQ-----TIWNSLLGACGTHKKTELVNFIAERLLTTLPEDPSILVTLSNVYATLEM 493
Query: 448 WEDVARVRELMKKRRM 463
W+D ++RE++KK M
Sbjct: 494 WDDSRKMREVIKKVGM 509
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 81/309 (26%), Positives = 137/309 (44%), Gaps = 49/309 (15%)
Query: 127 SLINMYGCFGAMDCARNMFVQMSP----RDLISWNSIVSGHVRSGDMSAAHELFDIMPER 182
S+I G F A R++ + D+ N++++ +V + A LFD ER
Sbjct: 8 SVIRQCGRFRAFRHGRSLHAHIIKLGVFNDVFFANNLLAMYVDISLLKDARRLFDETLER 67
Query: 183 NVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRG-NDKTMASVLTACGRSARFNEGRSV 241
NV +W MIS YS SG P +LK + +M++S N ++VL ACG G+ +
Sbjct: 68 NVATWTTMISAYSSSGRPDTALKFYVQMLESKSETPNGFLYSAVLKACGLVGDLESGKLI 127
Query: 242 HGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKP 301
HG R +L + +L L+D+Y KC + A++VFD + + WN MI G+ G
Sbjct: 128 HGRVFRANLGFDTVLMNTLLDMYVKCGSLSSARKVFDDILCPSSTSWNTMISGYGKEGLM 187
Query: 302 EEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNF 361
EE + LF + PD +++ +I
Sbjct: 188 EEAVNLFYQMPE---------PDTVSWNSII----------------------------- 209
Query: 362 AHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLA 421
A + + +LYA ++A + ++PE + ++W SL+S C G ++V L
Sbjct: 210 AGFGILIDLYANDGKIKDALRLFYRLPEKD------IVVWSSLISWCTKMGLNSLVFSLF 263
Query: 422 KSFVDMDPQ 430
+ V++D +
Sbjct: 264 RDMVNLDIE 272
>gi|356498282|ref|XP_003517982.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g02980-like [Glycine max]
Length = 609
Score = 234 bits (598), Expect = 6e-59, Method: Compositional matrix adjust.
Identities = 144/486 (29%), Positives = 235/486 (48%), Gaps = 44/486 (9%)
Query: 1 MKQLLQIQAHLITSGLFFNNSFWT--INLLKHSADFGSPDYTVLVFKCINNPGTFCVNAV 58
+++L QIQA+ I + N + T IN + S D+ +F I P N +
Sbjct: 48 LRELKQIQAYTIKTHQN-NPTVLTKLINFCTSNPTIASMDHAHRMFDKIPQPDIVLFNTM 106
Query: 59 IKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGV 118
+ Y+ P + ++ Q++ +G +P+ YTF SL +CA+ +E G H LA+K GV
Sbjct: 107 ARGYARFDDPLRAILLCSQVLCSGLLPDDYTFSSLLKACARLKALEEGKQLHCLAVKLGV 166
Query: 119 DFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDI 178
+ V +LINMY D+ AA +FD
Sbjct: 167 GDNMYVCPTLINMY-------------------------------TACNDVDAARRVFDK 195
Query: 179 MPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEG 238
+ E VV++N +I+ +++ P +L LFRE+ +SG + D TM L++C + G
Sbjct: 196 IGEPCVVAYNAIITSCARNSRPNEALALFRELQESGLKPTDVTMLVALSSCALLGALDLG 255
Query: 239 RSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIH 298
R +H Y + + ++TALID+Y+KC ++ A VF M R+ W+AMI+ + H
Sbjct: 256 RWIHEYVKKNGFDQYVKVNTALIDMYAKCGSLDDAVSVFKDMPRRDTQAWSAMIVAYATH 315
Query: 299 GKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIK 358
G + I + + V PDEITF+G++ AC L+ EG +YF M Y I
Sbjct: 316 GHGSQAISMLREMKKAKV-----QPDEITFLGILYACSHTGLVEEGYEYFHSMTHEYGIV 370
Query: 359 PNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVE 418
P+ HY CM +L A EEA + + ++P + I+W +LLS C G V M +
Sbjct: 371 PSIKHYGCMIDLLGRAGRLEEACKFIDELP-----IKPTPILWRTLLSSCSSHGNVEMAK 425
Query: 419 RLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLKEVV 478
+ + ++D Y L N+ A G+W+DV +R++M + ++PGC +++ VV
Sbjct: 426 LVIQRIFELDDSHGGDYVILSNLCARNGRWDDVNHLRKMMVDKGALKVPGCSSIEVNNVV 485
Query: 479 EKLKVG 484
+ G
Sbjct: 486 HEFFSG 491
>gi|7671499|emb|CAB89340.1| putative protein [Arabidopsis thaliana]
Length = 514
Score = 234 bits (598), Expect = 6e-59, Method: Compositional matrix adjust.
Identities = 151/502 (30%), Positives = 239/502 (47%), Gaps = 52/502 (10%)
Query: 11 LITSGLFFNNSFWTINLLKHSADFGSP---DYTVLVFKCINNPGTFCVNAVIKAYSNSCV 67
++ +GL N S + L +SA P Y +F I P N V++ + S
Sbjct: 1 MVVNGLMSNLS--VVGELIYSASLSVPGALKYAHKLFDEIPKPDVSICNHVLRGSAQSMK 58
Query: 68 PDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNS 127
P++ V Y +M K G P+ YTF + +C+K G HG +++G V N+
Sbjct: 59 PEKTVSLYTEMEKRGVSPDRYTFTFVLKACSKLEWRSNGFAFHGKVVRHGFVLNEYVKNA 118
Query: 128 LINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSW 187
LI + G + A +F + ++W+S+ SG+ + G + A LFD MP ++ V+W
Sbjct: 119 LILFHANCGDLGIASELFDDSAKAHKVAWSSMTSGYAKRGKIDEAMRLFDEMPYKDQVAW 178
Query: 188 NI-------------------------------MISGYSKSGNPGCSLKLFREMMKSGFR 216
N+ MISGY G P +L +F+EM +G
Sbjct: 179 NVMITGCLKCKEMDSARELFDRFTEKDVVTWNAMISGYVNCGYPKEALGIFKEMRDAGEH 238
Query: 217 GNDKTMASVLTACGRSARFNEGRSVHGYTVRT-SLKPNIILDT----ALIDLYSKCQKVE 271
+ T+ S+L+AC G+ +H Y + T S+ +I + T ALID+Y+KC ++
Sbjct: 239 PDVVTILSLLSACAVLGDLETGKRLHIYILETASVSSSIYVGTPIWNALIDMYAKCGSID 298
Query: 272 VAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGV 331
A VF + DR+L WN +I+G +H E I++F + V P+E+TFIGV
Sbjct: 299 RAIEVFRGVKDRDLSTWNTLIVGLALH-HAEGSIEMFEEMQRLKVW-----PNEVTFIGV 352
Query: 332 ICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDN 391
I AC + + EGRKYF M D Y I+PN HY CM ++ A EEA + M
Sbjct: 353 ILACSHSGRVDEGRKYFSLMRDMYNIEPNIKHYGCMVDMLGRAGQLEEAFMFVESM---- 408
Query: 392 DNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDV 451
+ +I+W +LL C+ G V + + + + M + Y L N+YA GQW+ V
Sbjct: 409 -KIEPNAIVWRTLLGACKIYGNVELGKYANEKLLSMRKDESGDYVLLSNIYASTGQWDGV 467
Query: 452 ARVRELMKKRRMGRMPGCRLVD 473
+VR++ R+ + G L++
Sbjct: 468 QKVRKMFDDTRVKKPTGVSLIE 489
>gi|255545098|ref|XP_002513610.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223547518|gb|EEF49013.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 660
Score = 234 bits (598), Expect = 6e-59, Method: Compositional matrix adjust.
Identities = 144/497 (28%), Positives = 247/497 (49%), Gaps = 48/497 (9%)
Query: 25 INLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFM 84
I L++ A G P +F I + N +I++Y N+ + ++ Y M GF+
Sbjct: 58 IKLMRVYAACGEPGLARHIFDEITDKNVVFFNVMIRSYVNNHLYKDALLVYKTMYTQGFV 117
Query: 85 PNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNM 144
P+ YT+ + + +++ + G HG LK G+D L V N LI MYG ++ A+ +
Sbjct: 118 PDMYTYPCVLKASSRSDSLWVGLQIHGAVLKIGLDLNLYVGNGLIAMYGKCKSLKEAQQV 177
Query: 145 FVQMSPRDLISWNSIVSGHVRSGDMSAAHEL----------------------------- 175
++ RD++SWNS+VS + ++G + A EL
Sbjct: 178 LDEIPCRDVVSWNSMVSVYAQNGRFNDALELCREMEALNLKPNDCTMASLLPAVTNTTSD 237
Query: 176 --------FDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLT 227
F + +++V+SWN+MI+ Y + P ++ L+ +M +G + ++ SVL
Sbjct: 238 NVLYVKEMFLKLTKKSVISWNVMIAMYVNNSMPKEAVVLYSQMEANGVEPDVVSIVSVLP 297
Query: 228 ACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVC 287
A G + + GR VH + R L PN++L+ ALID+Y+KC + A+ VF+ M R++V
Sbjct: 298 AYGDLSALSLGRRVHKFAERKKLLPNLLLENALIDMYAKCGCLRDARAVFNQMQFRDVVS 357
Query: 288 WNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKY 347
W ++I + G+ + + +F + N ++PD I F+ V+ AC A LL +GR Y
Sbjct: 358 WTSIISAYGKCGQGRDAVAVFAEMRN-----SGLNPDSIAFVSVLAACSHAGLLDDGRYY 412
Query: 348 FRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSL 407
F M + I P H+ C+ +L A +EA +R+MP + D +W LLS
Sbjct: 413 FNLMAEC-GITPKLEHFACVVDLLGRAGKIDEAYGFIRQMPLEPDER-----VWGPLLSA 466
Query: 408 CRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMP 467
CR + + A + ++P+ Y L N+YA AG+W DVA +R +M+++ + ++P
Sbjct: 467 CRVYSNMNIGILAADKLLMLNPEHSGYYVLLSNIYAKAGRWADVAAIRSIMERKGIKKLP 526
Query: 468 GCRLVDLKEVVEKLKVG 484
G V+L + V G
Sbjct: 527 GISNVELNDGVHTFLAG 543
Score = 41.2 bits (95), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 50/233 (21%), Positives = 105/233 (45%), Gaps = 25/233 (10%)
Query: 235 FNEGRSVHGYTVRTS-LKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMIL 293
N + +HG + L+ N + L+ +Y+ C + +A+ +FD + D+N+V +N MI
Sbjct: 34 INTLKKLHGKVLNDQYLRWNPSVGIKLMRVYAACGEPGLARHIFDEITDKNVVFFNVMIR 93
Query: 294 GHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMID 353
+ + ++ + LV T+ PD T+ V+ A R++ L G + ++
Sbjct: 94 SYVNNHLYKDAL-----LVYKTMYTQGFVPDMYTYPCVLKASSRSDSLWVGLQIHGAVL- 147
Query: 354 FYKIKPNFAHYW--CMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLC--- 408
KI + Y + +Y + +EA+++L ++P + + W S++S+
Sbjct: 148 --KIGLDLNLYVGNGLIAMYGKCKSLKEAQQVLDEIP------CRDVVSWNSMVSVYAQN 199
Query: 409 -RFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKK 460
RF A+ + + +++ P D + L V ++V V+E+ K
Sbjct: 200 GRFNDALELCREMEA--LNLKPNDCTMASLLPAVTNTTS--DNVLYVKEMFLK 248
>gi|297835272|ref|XP_002885518.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297331358|gb|EFH61777.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 904
Score = 234 bits (598), Expect = 6e-59, Method: Compositional matrix adjust.
Identities = 133/431 (30%), Positives = 228/431 (52%), Gaps = 13/431 (3%)
Query: 56 NAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALK 115
NA+ Y + + + M+ +G P+ + +S SC++ + G CHG L+
Sbjct: 305 NAMASNYVRQGLTKEALGVLNLMMDSGIRPDRISMLSAISSCSQLRNILWGKSCHGYVLR 364
Query: 116 NGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHEL 175
NG + + N+LI+MY D A +F +MS + +++WNSIV+G++ +G++ AA E
Sbjct: 365 NGFESWDNICNALIDMYMKCHRQDTAFRIFDRMSNKTVVTWNSIVAGYIENGEVDAAWET 424
Query: 176 FDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDK-TMASVLTACGRSAR 234
F+ MPE+N+VSWN +IS + ++++F M D TM S+ +ACG
Sbjct: 425 FNTMPEKNIVSWNTIISALVQENMYEEAIEVFHYMQSQECVNVDGVTMMSIASACGHLGA 484
Query: 235 FNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILG 294
+ + ++ Y + ++ ++ L T L+D++S+C E A +F+S+ +R++ W A I
Sbjct: 485 LDLAKWIYYYIEKNRIQLDVRLGTTLVDMFSRCGDPESAMSIFNSLTNRDVSAWTAAIGA 544
Query: 295 HCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDF 354
+ G E I+LF ++ + PD + FIG + AC L+ +G++ F M
Sbjct: 545 MAMAGNVERAIELFNEMIE-----QGLKPDGVVFIGALTACCHGGLVQQGKEIFNSMEKL 599
Query: 355 YKIKPNFAHYWCMANLYAGAELTEEAEEILRKMP-EDNDNMSFESIMWVSLLSLCRFQGA 413
+ + P HY CM +L A L EEA ++++ MP E ND ++W SLL+ CR QG
Sbjct: 600 HGVSPEDVHYGCMVDLLGRAGLLEEALQLIKDMPTEPND------VIWNSLLAACRVQGN 653
Query: 414 VAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVD 473
V M A+ + P+ Y L NVYA AG+W D+A+VR MK++ + + PG ++
Sbjct: 654 VEMAAFAAEKIQVLAPERTGSYVLLSNVYASAGRWNDMAKVRLSMKEKGLRKPPGTSVIQ 713
Query: 474 LKEVVEKLKVG 484
++ + G
Sbjct: 714 IRGKTHEFTSG 724
Score = 130 bits (327), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 86/314 (27%), Positives = 153/314 (48%), Gaps = 41/314 (13%)
Query: 27 LLKHSADFGSPD---YTVLVFKCINNPGT-FCVNAVIKAYSNSCVPDQGVVFYLQMIKNG 82
L+ S + G+ + + VF+ + GT F N++I+ Y++S + + ++ +++M+ +G
Sbjct: 69 LVARSCELGTRESLSFAKEVFENGESYGTCFMYNSLIRGYASSGLCKEAILLFIRMMNSG 128
Query: 83 FMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCAR 142
P+ YTF CAK+ G HGL +K MD A+
Sbjct: 129 ISPDKYTFPFGLSVCAKSRDKGNGIQIHGLIIK----------------------MDYAK 166
Query: 143 NMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGC 202
++FVQ NS+V + G++ A ++FD M ERNVVSW MI GY++
Sbjct: 167 DLFVQ---------NSLVHFYAECGELDCARKVFDEMSERNVVSWTSMICGYARREFAKD 217
Query: 203 SLKLFREMMKS-GFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALI 261
++ LF M++ N TM V++AC + G V+ + + ++ N ++ +AL+
Sbjct: 218 AVDLFFRMVRDEDVIPNSVTMVCVISACAKLEDLETGEKVYDFIRDSGIEVNDLMISALV 277
Query: 262 DLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSI 321
D+Y KC +++A+R+FD NL NAM + G +E + + +++ I
Sbjct: 278 DMYMKCNAIDIAKRLFDEYGASNLDLCNAMASNYVRQGLTKEALGVLNLMMD-----SGI 332
Query: 322 SPDEITFIGVICAC 335
PD I+ + I +C
Sbjct: 333 RPDRISMLSAISSC 346
Score = 103 bits (257), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 80/347 (23%), Positives = 150/347 (43%), Gaps = 42/347 (12%)
Query: 7 IQAHLITSGLFFNNSFWTINLLKH-SADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSNS 65
IQ H + + + + N L H A+ G D VF ++ ++I Y+
Sbjct: 153 IQIHGLIIKMDYAKDLFVQNSLVHFYAECGELDCARKVFDEMSERNVVSWTSMICGYARR 212
Query: 66 CVPDQGVVFYLQMIKN-GFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPV 124
V + +M+++ +PNS T V + +CAK +E G + +G++ +
Sbjct: 213 EFAKDAVDLFFRMVRDEDVIPNSVTMVCVISACAKLEDLETGEKVYDFIRDSGIEVNDLM 272
Query: 125 MNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNV 184
+++L++MY A+D A+ LFD N+
Sbjct: 273 ISALVDMYMKCNAIDIAK-------------------------------RLFDEYGASNL 301
Query: 185 VSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGY 244
N M S Y + G +L + MM SG R + +M S +++C + G+S HGY
Sbjct: 302 DLCNAMASNYVRQGLTKEALGVLNLMMDSGIRPDRISMLSAISSCSQLRNILWGKSCHGY 361
Query: 245 TVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEG 304
+R + + ALID+Y KC + + A R+FD M+++ +V WN+++ G+ +G+ +
Sbjct: 362 VLRNGFESWDNICNALIDMYMKCHRQDTAFRIFDRMSNKTVVTWNSIVAGYIENGEVDAA 421
Query: 305 IKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQM 351
+ F + + +++ +I A V+ + E + F M
Sbjct: 422 WETFNTMPEKNI---------VSWNTIISALVQENMYEEAIEVFHYM 459
Score = 93.2 bits (230), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 47/162 (29%), Positives = 85/162 (52%), Gaps = 4/162 (2%)
Query: 187 WNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTV 246
+N +I GY+ SG ++ LF MM SG + T L+ C +S G +HG +
Sbjct: 101 YNSLIRGYASSGLCKEAILLFIRMMNSGISPDKYTFPFGLSVCAKSRDKGNGIQIHGLII 160
Query: 247 RTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIK 306
+ ++ + +L+ Y++C +++ A++VFD M++RN+V W +MI G+ ++ +
Sbjct: 161 KMDYAKDLFVQNSLVHFYAECGELDCARKVFDEMSERNVVSWTSMICGYARREFAKDAVD 220
Query: 307 LFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYF 348
LF +V + P+ +T + VI AC + E L G K +
Sbjct: 221 LFFRMVRDE----DVIPNSVTMVCVISACAKLEDLETGEKVY 258
>gi|296086269|emb|CBI31710.3| unnamed protein product [Vitis vinifera]
Length = 649
Score = 234 bits (598), Expect = 6e-59, Method: Compositional matrix adjust.
Identities = 145/485 (29%), Positives = 240/485 (49%), Gaps = 18/485 (3%)
Query: 1 MKQLLQIQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIK 60
+ LLQI A +I SG ++S +L+ + F D VF NP N++I+
Sbjct: 65 LNPLLQIHAQIIVSGFKHHHSI--THLINLYSLFHKCDLARSVFDSTPNPSRILWNSMIR 122
Query: 61 AYSNSCVPDQGVVFYLQMI-KNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVD 119
AY+ S ++ + Y M+ K G + + L +K G ++R K V
Sbjct: 123 AYTRSKQYNEALEMYYCMVEKGGLERDVFIGAGLVDMYSKMGDLKRAREVFDKMPKRDV- 181
Query: 120 FELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIM 179
N++I AR +F QM +D +SW ++++G+ +G ELFD M
Sbjct: 182 ---VAWNAMIAGLSQSEDPYVARRVFDQMVDQDDVSWGTMMAGYAHNGCFVEVLELFDKM 238
Query: 180 PERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGR 239
NV +WN++I+ Y ++G+ ++ F +M F N T SVL A A F EG
Sbjct: 239 KLGNV-TWNVIIAAYMQNGHAKEAISSFHQMRLENFHPNSVTFVSVLPAAAYLAAFREGM 297
Query: 240 SVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHG 299
+ H ++ N ++ +LID+Y+KC +++ ++++F+ M ++ V WNAM+ G+ +HG
Sbjct: 298 AFHACIIQMGFLSNTLVGNSLIDMYAKCGQLDYSEKLFNEMDHKDTVSWNAMLSGYAVHG 357
Query: 300 KPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKP 359
+ I LF+ + V D ++F+ V+ AC A L+ EGRK F M D Y IKP
Sbjct: 358 HGDRAIALFSLMQESQV-----QIDSVSFVSVLSACRHAGLVEEGRKIFHSMSDKYHIKP 412
Query: 360 NFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVER 419
+ HY CM +L A L +E ++ MP + D + +W +LL CR V + E
Sbjct: 413 DLEHYACMVDLLGRAGLFDETLGFIKVMPVEPD-----AGVWGALLGSCRMHSNVKLGEV 467
Query: 420 LAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLKEVVE 479
V ++P++ + + L ++YA +G+W D + R M + + PGC V+LK V
Sbjct: 468 ALDHLVKLEPRNPAHFVVLSSIYAQSGRWADAGKARSKMNDLGLKKTPGCSWVELKNKVH 527
Query: 480 KLKVG 484
+VG
Sbjct: 528 AFRVG 532
>gi|147781801|emb|CAN65443.1| hypothetical protein VITISV_011420 [Vitis vinifera]
Length = 485
Score = 234 bits (598), Expect = 7e-59, Method: Compositional matrix adjust.
Identities = 121/404 (29%), Positives = 214/404 (52%), Gaps = 41/404 (10%)
Query: 81 NGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDC 140
+ P+ T VSL +CA+ G +ERG + H + + G+D L V N++++MY
Sbjct: 5 DNLRPDEVTMVSLVPACAQLGNLERGKLLHSYSKELGLDENLSVNNAILDMY-------- 56
Query: 141 ARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNP 200
+ D+ +A E+F+ + E++V+SW M+SG +KSG
Sbjct: 57 -----------------------CKCDDIESAQEVFNRIREKDVLSWTSMLSGLAKSGYF 93
Query: 201 GCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTAL 260
SL LFR+M ++ T+ VL+AC ++ ++G+ +H + + +++L+TAL
Sbjct: 94 QESLALFRKMQLHKIEPDEITLVGVLSACAQTGALDQGKYIHLLIDKFEINCDLVLETAL 153
Query: 261 IDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGS 320
+D+Y+KC +++A +VF M RN+ WNAMI G +HG E+ I LF +
Sbjct: 154 VDMYAKCGSIDLALQVFRRMRVRNVFTWNAMIGGLAMHGHGEDAISLFDQM-----EXDK 208
Query: 321 ISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEA 380
+ PD++TFI ++CAC A L+ EG F+ M + ++I+P HY C+ +L A ++A
Sbjct: 209 LMPDDVTFIALLCACSHAGLVDEGLAMFQAMKNKFQIEPRMEHYGCVVDLLCRARKVDDA 268
Query: 381 EEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLN 440
+ MP + S++W +LL CR G + E++ + ++++P RY L N
Sbjct: 269 LAFIENMP-----IKANSVLWATLLGACRSGGHFDLAEKIXRRVIELEPDSCGRYVMLSN 323
Query: 441 VYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLKEVVEKLKVG 484
+YA QW+ ++R+ MK + + + PGC ++L ++ + G
Sbjct: 324 LYAGVSQWDHALKLRKQMKNKGIEKTPGCSWIELNGMIHQFVAG 367
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 56/259 (21%), Positives = 113/259 (43%), Gaps = 34/259 (13%)
Query: 43 VFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGC 102
VF I +++ + S + + + +M + P+ T V + +CA+TG
Sbjct: 68 VFNRIREKDVLSWTSMLSGLAKSGYFQESLALFRKMQLHKIEPDEITLVGVLSACAQTGA 127
Query: 103 VERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSG 162
+++G H L K ++ +L + +L++MY G++D A +F +M R++ +WN++
Sbjct: 128 LDQGKYIHLLIDKFEINCDLVLETALVDMYAKCGSIDLALQVFRRMRVRNVFTWNAM--- 184
Query: 163 HVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTM 222
I G + G+ ++ LF +M +D T
Sbjct: 185 ----------------------------IGGLAMHGHGEDAISLFDQMEXDKLMPDDVTF 216
Query: 223 ASVLTACGRSARFNEGRSV-HGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMA 281
++L AC + +EG ++ + ++P + ++DL + +KV+ A ++M
Sbjct: 217 IALLCACSHAGLVDEGLAMFQAMKNKFQIEPRMEHYGCVVDLLCRARKVDDALAFIENMP 276
Query: 282 DR-NLVCWNAMILGHCIHG 299
+ N V W A +LG C G
Sbjct: 277 IKANSVLW-ATLLGACRSG 294
Score = 45.4 bits (106), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 53/205 (25%), Positives = 87/205 (42%), Gaps = 27/205 (13%)
Query: 27 LLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPN 86
L+ A GS D + VF+ + F NA+I + + + + QM + MP+
Sbjct: 153 LVDMYAKCGSIDLALQVFRRMRVRNVFTWNAMIGGLAMHGHGEDAISLFDQMEXDKLMPD 212
Query: 87 SYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDC-ARNM- 144
TF++L +C+ G V+ G+ A+KN E P M YGC + C AR +
Sbjct: 213 DVTFIALLCACSHAGLVDE-GLAMFQAMKNKFQIE-PRMEH----YGCVVDLLCRARKVD 266
Query: 145 ----FVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPE--RNVVSWN-------IMI 191
F++ P I NS++ + S H FD+ + R V+ +M+
Sbjct: 267 DALAFIENMP---IKANSVLWATLLGACRSGGH--FDLAEKIXRRVIELEPDSCGRYVML 321
Query: 192 SG-YSKSGNPGCSLKLFREMMKSGF 215
S Y+ +LKL ++M G
Sbjct: 322 SNLYAGVSQWDHALKLRKQMKNKGI 346
>gi|357467943|ref|XP_003604256.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355505311|gb|AES86453.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 670
Score = 234 bits (597), Expect = 7e-59, Method: Compositional matrix adjust.
Identities = 146/430 (33%), Positives = 217/430 (50%), Gaps = 45/430 (10%)
Query: 56 NAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALK 115
+I Y + + + V +L+M PN+ TFVS+ G+C K GC+ G HGL K
Sbjct: 254 TGLISGYMKAGLFNDAVALFLRM---DVAPNAATFVSILGACGKLGCLNLGKGIHGLVSK 310
Query: 116 NGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHEL 175
EL V N+L++MY V+ ++ A L
Sbjct: 311 YPHGKELVVSNTLMDMY-------------------------------VKCESVTDAKRL 339
Query: 176 FDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARF 235
FD +PE+++VSW MISG + P SL LF EM+ SGF + + SVL+AC
Sbjct: 340 FDEIPEKDIVSWTSMISGLVQYQCPQESLDLFYEMLGSGFEPDGVILTSVLSACASLGLL 399
Query: 236 NEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGH 295
+ GR VH Y + +K ++ + T+LID+Y+KC +E+AQ++F+ + +N+ WNA I G
Sbjct: 400 DYGRWVHEYIDHSRIKWDVHIGTSLIDMYAKCGCIEMAQQMFNLLPSKNIRTWNAYIGGL 459
Query: 296 CIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMID-F 354
I+G +E +K F LV P+EITF+ V AC + L+ EGR YF+QM
Sbjct: 460 AINGHGQEALKQFGYLVE-----SGTRPNEITFLAVFSACCHSGLVDEGRSYFKQMTSPP 514
Query: 355 YKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAV 414
Y + P HY CM +L AEL EEA E++ KMP M + + +LLS G V
Sbjct: 515 YNLSPWLEHYGCMVDLLCRAELVEEAMELINKMP-----MPPDVQIIGALLSASSTYGNV 569
Query: 415 AMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDL 474
+ + K+ + + Q+ Y L N YA +W +V VR LMK++ + + PG L+ +
Sbjct: 570 ELTPEMLKTVRNFECQESGVYVLLSNWYANNKKWAEVRSVRRLMKEKGISKAPGSSLIRV 629
Query: 475 KEVVEKLKVG 484
K VG
Sbjct: 630 DGKSHKFVVG 639
Score = 154 bits (388), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 113/401 (28%), Positives = 176/401 (43%), Gaps = 59/401 (14%)
Query: 1 MKQLLQIQAHLITSGLFFNNSFWT--INLL-KHSADFGSP-------DYTVLVFKCINNP 50
++ QI A L+ S L N+ T N KH D P D++ F C
Sbjct: 97 LRSFKQIHAQLLRSTLVDNDLVVTKAANFFGKHVTDIRYPCNFLKQFDWSFSSFPC---- 152
Query: 51 GTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCH 110
N +I Y P + Y ++ NGF+P+ YT ++ SCA+ + H
Sbjct: 153 -----NLIISGYGAGNFPWAAIRIYRWVVGNGFVPDVYTVPAVLKSCARFSGIAEVKQIH 207
Query: 111 GLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMS 170
LA+K D +MFVQ NS V + GD
Sbjct: 208 TLAVKT----------------------DLWCDMFVQ---------NSFVHVYSICGDTV 236
Query: 171 AAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACG 230
A ++FD MP R+VVSW +ISGY K+G ++ LF M N T S+L ACG
Sbjct: 237 GASKVFDFMPVRDVVSWTGLISGYMKAGLFNDAVALFLRM---DVAPNAATFVSILGACG 293
Query: 231 RSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNA 290
+ N G+ +HG + +++ L+D+Y KC+ V A+R+FD + ++++V W +
Sbjct: 294 KLGCLNLGKGIHGLVSKYPHGKELVVSNTLMDMYVKCESVTDAKRLFDEIPEKDIVSWTS 353
Query: 291 MILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQ 350
MI G + P+E + LF ++ G PD + V+ AC LL GR + +
Sbjct: 354 MISGLVQYQCPQESLDLFYEML-----GSGFEPDGVILTSVLSACASLGLLDYGR-WVHE 407
Query: 351 MIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDN 391
ID +IK + + ++YA E A+++ +P N
Sbjct: 408 YIDHSRIKWDVHIGTSLIDMYAKCGCIEMAQQMFNLLPSKN 448
Score = 88.2 bits (217), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 54/225 (24%), Positives = 109/225 (48%), Gaps = 16/225 (7%)
Query: 188 NIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVR 247
N++ISGY P +++++R ++ +GF + T+ +VL +C R + E + +H V+
Sbjct: 153 NLIISGYGAGNFPWAAIRIYRWVVGNGFVPDVYTVPAVLKSCARFSGIAEVKQIHTLAVK 212
Query: 248 TSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKL 307
T L ++ + + + +YS C A +VFD M R++V W +I G+ G + + L
Sbjct: 213 TDLWCDMFVQNSFVHVYSICGDTVGASKVFDFMPVRDVVSWTGLISGYMKAGLFNDAVAL 272
Query: 308 FTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCM 367
F + ++P+ TF+ ++ AC + L G K ++ Y +
Sbjct: 273 FLRM--------DVAPNAATFVSILGACGKLGCLNLG-KGIHGLVSKYPHGKELVVSNTL 323
Query: 368 ANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLS-LCRFQ 411
++Y E +A+ + ++PE + + W S++S L ++Q
Sbjct: 324 MDMYVKCESVTDAKRLFDEIPEK------DIVSWTSMISGLVQYQ 362
>gi|62733531|gb|AAX95648.1| Tetratricopeptide repeat, putative [Oryza sativa Japonica Group]
Length = 888
Score = 234 bits (597), Expect = 7e-59, Method: Compositional matrix adjust.
Identities = 140/415 (33%), Positives = 220/415 (53%), Gaps = 12/415 (2%)
Query: 70 QGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLI 129
+ V Y QM+ +G PN F S+ G+CA + G H LK + V ++LI
Sbjct: 361 EAVSLYSQMLADGCRPNISCFSSVLGACASLQDLRSGRKIHNQTLKMACSNNVFVSSALI 420
Query: 130 NMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNI 189
+MY + A+ +F + ++++ WNS++SG+ + M A ELF MP RNV SWN
Sbjct: 421 DMYCKCKQLPDAQMIFYSLPQKNIVCWNSLISGYSNNSKMVEAEELFKKMPARNVASWNS 480
Query: 190 MISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTS 249
+ISGY+++ +LK F M+ SG + T +SVL AC G+ VH ++
Sbjct: 481 IISGYAQNRQFIDALKSFHAMLASGQSPGEITFSSVLLACASLCSLEMGKMVHAKIIKLG 540
Query: 250 LKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFT 309
+K +I + TAL D+Y+K ++ ++RVF M RN V W AMI G +G EE I LF
Sbjct: 541 IKESIFVGTALSDMYAKSGDLDSSKRVFYEMPKRNDVAWTAMIQGLAENGFAEESILLFE 600
Query: 310 ALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMAN 369
+++ I+P+E TF+ ++ AC + L+ YF +M+ I P HY CM +
Sbjct: 601 DMIS-----AGITPNEQTFLAILFACSHSGLVEHAMHYF-EMMQACGISPKAKHYTCMVD 654
Query: 370 LYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDP 429
+ A A EAE++L K+ ++ S W +LLS C M ER AK ++D
Sbjct: 655 VLARAGHLAEAEDLLLKIESKSEANS-----WAALLSACNIYRNKEMGERAAKRLQELDK 709
Query: 430 QDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLK-EVVEKLKV 483
+ + Y L N+YA G+W+D A +R LMK + + GC V ++ E ++K+++
Sbjct: 710 DNTAGYVLLSNMYASCGKWKDAAEMRILMKGINLKKDGGCSWVQIRDEQLQKIQL 764
Score = 180 bits (457), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 110/377 (29%), Positives = 185/377 (49%), Gaps = 34/377 (9%)
Query: 56 NAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALK 115
A+I + + +P + + +M+ G PN T VS+ +C G + GLA+K
Sbjct: 214 TAMIAGFVLNELPKDALGVFHEMLSCGVSPNEITLVSVIKACIGAGEFDLAMSIVGLAMK 273
Query: 116 -NGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHE 174
N +D L V NSLI +Y G D AR MF +M RD++SW +++ + GD+ A
Sbjct: 274 SNLLDKNLGVRNSLITLYLRKGDADAARRMFDEMEVRDVVSWTALLDVYAELGDLEGARR 333
Query: 175 LFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSAR 234
+ D MPERN VSW +++ + + GN ++ L+ +M+ G R N +SVL AC
Sbjct: 334 VLDEMPERNEVSWGTLVARHEQKGNAKEAVSLYSQMLADGCRPNISCFSSVLGACASLQD 393
Query: 235 FNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILG 294
GR +H T++ + N+ + +ALID+Y KC+++ AQ +F S+ +N+VCWN++I G
Sbjct: 394 LRSGRKIHNQTLKMACSNNVFVSSALIDMYCKCKQLPDAQMIFYSLPQKNIVCWNSLISG 453
Query: 295 HCIHGKPEEGIKLFTALVNGTVA--------------------------GGSISPDEITF 328
+ + K E +LF + VA SP EITF
Sbjct: 454 YSNNSKMVEAEELFKKMPARNVASWNSIISGYAQNRQFIDALKSFHAMLASGQSPGEITF 513
Query: 329 IGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMP 388
V+ AC L G+ ++I IK + ++++YA + + ++ + +MP
Sbjct: 514 SSVLLACASLCSLEMGKMVHAKIIKL-GIKESIFVGTALSDMYAKSGDLDSSKRVFYEMP 572
Query: 389 EDNDNMSFESIMWVSLL 405
+ ND + W +++
Sbjct: 573 KRND------VAWTAMI 583
Score = 97.4 bits (241), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 88/377 (23%), Positives = 155/377 (41%), Gaps = 80/377 (21%)
Query: 155 SWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGN-----------PGCS 203
+++ +V HV++GD+ +A LFD MPER+VVS+ M+ K G+ P CS
Sbjct: 150 AYDFMVREHVKAGDIVSARRLFDGMPERSVVSYTTMVDALMKRGSVRDAVELYRQCPLCS 209
Query: 204 --------------------LKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHG 243
L +F EM+ G N+ T+ SV+ AC + F+ S+ G
Sbjct: 210 VPFFTAMIAGFVLNELPKDALGVFHEMLSCGVSPNEITLVSVIKACIGAGEFDLAMSIVG 269
Query: 244 YTVRTSLKP--------------------------------NIILDTALIDLYSKCQKVE 271
++++L +++ TAL+D+Y++ +E
Sbjct: 270 LAMKSNLLDKNLGVRNSLITLYLRKGDADAARRMFDEMEVRDVVSWTALLDVYAELGDLE 329
Query: 272 VAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGV 331
A+RV D M +RN V W ++ H G +E + L++ ++ P+ F V
Sbjct: 330 GARRVLDEMPERNEVSWGTLVARHEQKGNAKEAVSLYSQML-----ADGCRPNISCFSSV 384
Query: 332 ICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDN 391
+ AC + L GRK Q + F + ++Y + +A+ I +P+ N
Sbjct: 385 LGACASLQDLRSGRKIHNQTLKMACSNNVFVSS-ALIDMYCKCKQLPDAQMIFYSLPQKN 443
Query: 392 DNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDV 451
+ W SL+S + E L F M ++ + + +++ YA Q+ D
Sbjct: 444 ------IVCWNSLISGYSNNSKMVEAEEL---FKKMPARNVASWNSIISGYAQNRQFIDA 494
Query: 452 ARVRELMKKRRMGRMPG 468
+ M G+ PG
Sbjct: 495 LKSFHAMLAS--GQSPG 509
>gi|449434238|ref|XP_004134903.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g21065-like [Cucumis sativus]
Length = 609
Score = 234 bits (597), Expect = 8e-59, Method: Compositional matrix adjust.
Identities = 150/484 (30%), Positives = 233/484 (48%), Gaps = 43/484 (8%)
Query: 3 QLLQIQAHLITSGLFFNNSFWTINLLKHSADFGSP-DYTVLVFKCINNPGTFCVNAVIKA 61
+L QI A I G+ N + +L+ +P + +F I P F N +I+
Sbjct: 50 KLKQIHAFSIRHGVPPQNPDFNKHLIFALVSLSAPMSFAAQIFNQIQAPNIFTWNTMIRG 109
Query: 62 YSNSCVPDQGVVFYLQM-IKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDF 120
++ S P V + QM + +P+++TF LF + AK V G H + ++NG D
Sbjct: 110 FAESENPSPAVELFSQMHAASSILPDTHTFPFLFKAVAKLMDVSLGEGIHSVVVRNGFDS 169
Query: 121 ELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMP 180
V NSL++MY FG + A +F MS RD ++WNS+
Sbjct: 170 LRFVQNSLVHMYSVFGFAESAYQVFEIMSYRDRVAWNSV--------------------- 208
Query: 181 ERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRS 240
I+G++ +G P +L L+REM G + TM S+L+AC G
Sbjct: 209 ----------INGFALNGMPNEALTLYREMGSEGVEPDGFTMVSLLSACVELGALALGER 258
Query: 241 VHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGK 300
VH Y V+ L N AL+DLYSKC AQ+VFD M +R++V W ++I+G ++G
Sbjct: 259 VHMYMVKVGLVQNQHASNALLDLYSKCGNFRDAQKVFDEMEERSVVSWTSLIVGLAVNGL 318
Query: 301 PEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPN 360
E +KLF G + + P EITF+GV+ AC +L EG YFR+M + Y I P
Sbjct: 319 GNEALKLF-----GELERQGLKPSEITFVGVLYACSHCGMLDEGFNYFRRMKEEYGILPR 373
Query: 361 FAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERL 420
H+ CM +L A +A + +R MP + +++W +LL C G + + E
Sbjct: 374 IEHHGCMVDLLCRAGKVGDAYDYIRNMPVPPN-----AVIWRTLLGACTIHGHLELGEVA 428
Query: 421 AKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLKEVVEK 480
++ + + L N+YA +W DV VR++M + + + PG LV+LK V +
Sbjct: 429 RAEIQRLEQRHSGDFVLLSNLYASERRWLDVQNVRKIMLMKGVKKTPGYSLVELKNRVYE 488
Query: 481 LKVG 484
+G
Sbjct: 489 FIMG 492
>gi|147863814|emb|CAN79347.1| hypothetical protein VITISV_019894 [Vitis vinifera]
Length = 667
Score = 234 bits (597), Expect = 8e-59, Method: Compositional matrix adjust.
Identities = 134/466 (28%), Positives = 229/466 (49%), Gaps = 39/466 (8%)
Query: 20 NSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMI 79
++F NLL+ A+ G VF + + G NA+I YS D+ + + Q+
Sbjct: 177 DAFIGTNLLRMYAEVGEIGDARKVFDGMPSRGLVTWNAMISCYSKYGRGDKSIGLFRQLX 236
Query: 80 KNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMD 139
+ G + YT+ + A V H L ++ G + N+L+N+Y
Sbjct: 237 REGISADEYTYAIVLNEFAARWQVFEAMQVHSLIIERGFCSDRFTNNALVNLYS------ 290
Query: 140 CARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGN 199
+ G +++A LF+ +P+++VVSW ++I G+ +SG+
Sbjct: 291 -------------------------KCGYVASASRLFEEIPDQDVVSWTVIIVGFLQSGH 325
Query: 200 PGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSL-KPNIILDT 258
++ LF +M N T +L AC + F +GR HG ++ L ++++ +
Sbjct: 326 MEEAMWLFYQMQLGDIEPNSFTFGGLLGACADANAFQKGRHFHGLVLKFGLLGADVVVGS 385
Query: 259 ALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAG 318
A++D+YSKC ++ A R F M +R++ WN +I G+ +G + +KL+ +V +
Sbjct: 386 AVVDMYSKCGEMGDALRAFQEMPERDIASWNGIICGYAQNGAGMKALKLYNEMV--LLGP 443
Query: 319 GSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTE 378
I+P+E+TF+GV+CAC LL EG YF++M+D + IKP HY CM +L A L +
Sbjct: 444 SGIAPNEVTFVGVLCACSHNGLLKEGYSYFKEMVDKHLIKPTAEHYTCMVDLLGRAGLLQ 503
Query: 379 EAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFL 438
EAE ++ +P DN +MW +LL C+ G V M R A+ +P++ S Y L
Sbjct: 504 EAEALILALPIKPDN-----VMWGALLGACKLHGDVQMTRRTAEHLYTNEPRNSSNYVLL 558
Query: 439 LNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLKEVVEKLKVG 484
N Y G+W + +RE+M+ R + + GC V++ + G
Sbjct: 559 ANSYTDIGEWGEAVEIREVMEARGVEKTAGCSWVEIGTCMHSFLAG 604
Score = 117 bits (292), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 69/243 (28%), Positives = 118/243 (48%), Gaps = 5/243 (2%)
Query: 149 SPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFR 208
S D +++ + G++ A ++FD MP R +V+WN MIS YSK G S+ LFR
Sbjct: 174 SDLDAFIGTNLLRMYAEVGEIGDARKVFDGMPSRGLVTWNAMISCYSKYGRGDKSIGLFR 233
Query: 209 EMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQ 268
++ + G ++ T A VL + E VH + + + AL++LYSKC
Sbjct: 234 QLXREGISADEYTYAIVLNEFAARWQVFEAMQVHSLIIERGFCSDRFTNNALVNLYSKCG 293
Query: 269 KVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITF 328
V A R+F+ + D+++V W +I+G G EE + LF + G I P+ TF
Sbjct: 294 YVASASRLFEEIPDQDVVSWTVIIVGFLQSGHMEEAMWLFYQM-----QLGDIEPNSFTF 348
Query: 329 IGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMP 388
G++ AC A +GR + ++ F + + + ++Y+ +A ++MP
Sbjct: 349 GGLLGACADANAFQKGRHFHGLVLKFGLLGADVVVGSAVVDMYSKCGEMGDALRAFQEMP 408
Query: 389 EDN 391
E +
Sbjct: 409 ERD 411
Score = 105 bits (261), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 88/333 (26%), Positives = 156/333 (46%), Gaps = 14/333 (4%)
Query: 101 GCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIV 160
G + + + H +KNG+ + N L+ Y A+ A + M ++S+N+I+
Sbjct: 29 GHMYKAPVLHASLVKNGLIAHVYQCNILLQAYINSQALSDAHKLLHFMPQPSVVSYNTIL 88
Query: 161 SGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDK 220
SG+ + G +S A +LFD +R+ SWNI++SG K+ G L F +M S R ++
Sbjct: 89 SGYFKFGLVSEAIKLFDGTSKRDCHSWNIVLSGCVKNHKLGEGLTHFMKMRCSSVRPDNF 148
Query: 221 TMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSM 280
T A ++ C G+ VH V+ + + T L+ +Y++ ++ A++VFD M
Sbjct: 149 TYAIIIPCC----DLGFGQQVHADIVKVCSDLDAFIGTNLLRMYAEVGEIGDARKVFDGM 204
Query: 281 ADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAEL 340
R LV WNAMI + +G+ ++ I LF L IS DE T+ V+
Sbjct: 205 PSRGLVTWNAMISCYSKYGRGDKSIGLFRQLXR-----EGISADEYTYAIVLNEFAARWQ 259
Query: 341 LTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIM 400
+ E + +I+ F + + NLY+ A + ++P D D +S+ I+
Sbjct: 260 VFEAMQVHSLIIERGFCSDRFTNN-ALVNLYSKCGYVASASRLFEEIP-DQDVVSWTVII 317
Query: 401 WVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFS 433
V L + A+ + ++ D++P F+
Sbjct: 318 -VGFLQSGHMEEAMWLFYQM--QLGDIEPNSFT 347
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 79/304 (25%), Positives = 132/304 (43%), Gaps = 40/304 (13%)
Query: 3 QLLQIQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAY 62
+ +Q+ + +I G F ++ F L+ + G +F+ I + +I +
Sbjct: 262 EAMQVHSLIIERG-FCSDRFTNNALVNLYSKCGYVASASRLFEEIPDQDVVSWTVIIVGF 320
Query: 63 SNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNG-VDFE 121
S ++ + + QM PNS+TF L G+CA ++G HGL LK G + +
Sbjct: 321 LQSGHMEEAMWLFYQMQLGDIEPNSFTFGGLLGACADANAFQKGRHFHGLVLKFGLLGAD 380
Query: 122 LPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPE 181
+ V +++++MY G M A F +M RD+ SWN I
Sbjct: 381 VVVGSAVVDMYSKCGEMGDALRAFQEMPERDIASWNGI---------------------- 418
Query: 182 RNVVSWNIMISGYSKSGNPGCSLKLFREMM---KSGFRGNDKTMASVLTACGRSARFNEG 238
I GY+++G +LKL+ EM+ SG N+ T VL AC + EG
Sbjct: 419 ---------ICGYAQNGAGMKALKLYNEMVLLGPSGIAPNEVTFVGVLCACSHNGLLKEG 469
Query: 239 RSVHGYTVRTSL-KPNIILDTALIDLYSKCQKVEVAQRVFDSMADR-NLVCWNAMILGHC 296
S V L KP T ++DL + ++ A+ + ++ + + V W A+ LG C
Sbjct: 470 YSYFKEMVDKHLIKPTAEHYTCMVDLLGRAGLLQEAEALILALPIKPDNVMWGAL-LGAC 528
Query: 297 -IHG 299
+HG
Sbjct: 529 KLHG 532
>gi|449440231|ref|XP_004137888.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g15300-like [Cucumis sativus]
gi|449521725|ref|XP_004167880.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g15300-like [Cucumis sativus]
Length = 521
Score = 234 bits (597), Expect = 8e-59, Method: Compositional matrix adjust.
Identities = 146/505 (28%), Positives = 247/505 (48%), Gaps = 56/505 (11%)
Query: 1 MKQLLQIQAHLITSGLFFNNSFWTINLLKHSA--DFGSPDYTVLVFKCINNPGTFCVNAV 58
+K+L Q QA ++ +G F+N+ L+ S+ GS + +F+ + +F N +
Sbjct: 12 IKELEQAQAFIVKAG-FYNHIPIITKLIAFSSLSPLGSLPHACALFQETSMDDSFICNTM 70
Query: 59 IKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKT-GCVE------------- 104
I+AYSN+ P + ++ Y +M + + +T+ + +CA+ C E
Sbjct: 71 IRAYSNTVFPLKALLIYNRMQRMDVDSDHFTYNFVLRACARAIKCTEMDDQCFGHHIISR 130
Query: 105 RGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPR------------- 151
+G H LK G D + V NSL+ +Y G + AR +F +M+ +
Sbjct: 131 KGSEIHARILKLGFDQDHHVQNSLLLVYSGSGLVGFARLIFNEMTVKTAVSWNIMMSAYN 190
Query: 152 ------------------DLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISG 193
+ +SWN++++ ++R ++ AA ++F+ MPER+VVSWN +ISG
Sbjct: 191 RVHDYKSADVLLESMPQTNAVSWNTLLARYIRLNNLVAARKVFEEMPERDVVSWNSIISG 250
Query: 194 YSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPN 253
Y + +L LF M + R + T S+L AC G+ +H +
Sbjct: 251 YVNVKDYKGALDLFHSMKQWNIRATEVTFISILGACAELGALEIGKKIHDSLKEKHYRIE 310
Query: 254 IILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVN 313
L A++D+Y+KC ++ +A VF+ M + + CWNAMI+G +HG E +++F ++
Sbjct: 311 GYLGNAIVDMYAKCGELGLALEVFNEMEMKPVSCWNAMIMGLAVHGHCERALEMFDSM-- 368
Query: 314 GTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAG 373
G P+ ITFI ++ AC LL EGR +F M+ YKI P+ HY CM +L +
Sbjct: 369 -KAEDGDHKPNRITFIALLIACSHKGLLAEGRHFFSLMVTKYKIMPDLKHYGCMIDLLSR 427
Query: 374 AELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFS 433
EEA +++ P S S++W +LL CR V + E + +++P
Sbjct: 428 WGFLEEAYVMIKTCP-----FSSCSVLWRTLLGGCRLHRHVELGEESFRKLAELEPGKDG 482
Query: 434 RYQFLLNVYAVAGQWEDVARVRELM 458
Y L N+YA +W+DV R+R+ M
Sbjct: 483 DYVLLSNIYAEEERWDDVERLRKEM 507
>gi|222625627|gb|EEE59759.1| hypothetical protein OsJ_12247 [Oryza sativa Japonica Group]
Length = 950
Score = 234 bits (597), Expect = 8e-59, Method: Compositional matrix adjust.
Identities = 140/415 (33%), Positives = 220/415 (53%), Gaps = 12/415 (2%)
Query: 70 QGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLI 129
+ V Y QM+ +G PN F S+ G+CA + G H LK + V ++LI
Sbjct: 361 EAVSLYSQMLADGCRPNISCFSSVLGACASLQDLRSGRKIHNQTLKMACSNNVFVSSALI 420
Query: 130 NMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNI 189
+MY + A+ +F + ++++ WNS++SG+ + M A ELF MP RNV SWN
Sbjct: 421 DMYCKCKQLPDAQMIFYSLPQKNIVCWNSLISGYSNNSKMVEAEELFKKMPARNVASWNS 480
Query: 190 MISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTS 249
+ISGY+++ +LK F M+ SG + T +SVL AC G+ VH ++
Sbjct: 481 IISGYAQNRQFIDALKSFHAMLASGQSPGEITFSSVLLACASLCSLEMGKMVHAKIIKLG 540
Query: 250 LKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFT 309
+K +I + TAL D+Y+K ++ ++RVF M RN V W AMI G +G EE I LF
Sbjct: 541 IKESIFVGTALSDMYAKSGDLDSSKRVFYEMPKRNDVAWTAMIQGLAENGFAEESILLFE 600
Query: 310 ALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMAN 369
+++ I+P+E TF+ ++ AC + L+ YF +M+ I P HY CM +
Sbjct: 601 DMIS-----AGITPNEQTFLAILFACSHSGLVEHAMHYF-EMMQACGISPKAKHYTCMVD 654
Query: 370 LYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDP 429
+ A A EAE++L K+ ++ S W +LLS C M ER AK ++D
Sbjct: 655 VLARAGHLAEAEDLLLKIESKSEANS-----WAALLSACNIYRNKEMGERAAKRLQELDK 709
Query: 430 QDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLK-EVVEKLKV 483
+ + Y L N+YA G+W+D A +R LMK + + GC V ++ E ++K+++
Sbjct: 710 DNTAGYVLLSNMYASCGKWKDAAEMRILMKGINLKKDGGCSWVQIRDEQLQKIQL 764
Score = 180 bits (457), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 110/377 (29%), Positives = 185/377 (49%), Gaps = 34/377 (9%)
Query: 56 NAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALK 115
A+I + + +P + + +M+ G PN T VS+ +C G + GLA+K
Sbjct: 214 TAMIAGFVLNELPKDALGVFHEMLSCGVSPNEITLVSVIKACIGAGEFDLAMSIVGLAMK 273
Query: 116 -NGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHE 174
N +D L V NSLI +Y G D AR MF +M RD++SW +++ + GD+ A
Sbjct: 274 SNLLDKNLGVRNSLITLYLRKGDADAARRMFDEMEVRDVVSWTALLDVYAELGDLEGARR 333
Query: 175 LFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSAR 234
+ D MPERN VSW +++ + + GN ++ L+ +M+ G R N +SVL AC
Sbjct: 334 VLDEMPERNEVSWGTLVARHEQKGNAKEAVSLYSQMLADGCRPNISCFSSVLGACASLQD 393
Query: 235 FNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILG 294
GR +H T++ + N+ + +ALID+Y KC+++ AQ +F S+ +N+VCWN++I G
Sbjct: 394 LRSGRKIHNQTLKMACSNNVFVSSALIDMYCKCKQLPDAQMIFYSLPQKNIVCWNSLISG 453
Query: 295 HCIHGKPEEGIKLFTALVNGTVA--------------------------GGSISPDEITF 328
+ + K E +LF + VA SP EITF
Sbjct: 454 YSNNSKMVEAEELFKKMPARNVASWNSIISGYAQNRQFIDALKSFHAMLASGQSPGEITF 513
Query: 329 IGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMP 388
V+ AC L G+ ++I IK + ++++YA + + ++ + +MP
Sbjct: 514 SSVLLACASLCSLEMGKMVHAKIIKL-GIKESIFVGTALSDMYAKSGDLDSSKRVFYEMP 572
Query: 389 EDNDNMSFESIMWVSLL 405
+ ND + W +++
Sbjct: 573 KRND------VAWTAMI 583
Score = 97.4 bits (241), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 89/377 (23%), Positives = 157/377 (41%), Gaps = 80/377 (21%)
Query: 155 SWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGN-----------PGCS 203
+++ +V HV++GD+ +A LFD MPER+VVS+ M+ K G+ P CS
Sbjct: 150 AYDFMVREHVKAGDIVSARRLFDGMPERSVVSYTTMVDALMKRGSVRDAVELYRQCPLCS 209
Query: 204 --------------------LKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHG 243
L +F EM+ G N+ T+ SV+ AC + F+ S+ G
Sbjct: 210 VPFFTAMIAGFVLNELPKDALGVFHEMLSCGVSPNEITLVSVIKACIGAGEFDLAMSIVG 269
Query: 244 YTVRTSLKP--------------------------------NIILDTALIDLYSKCQKVE 271
++++L +++ TAL+D+Y++ +E
Sbjct: 270 LAMKSNLLDKNLGVRNSLITLYLRKGDADAARRMFDEMEVRDVVSWTALLDVYAELGDLE 329
Query: 272 VAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGV 331
A+RV D M +RN V W ++ H G +E + L++ ++ P+ F V
Sbjct: 330 GARRVLDEMPERNEVSWGTLVARHEQKGNAKEAVSLYSQML-----ADGCRPNISCFSSV 384
Query: 332 ICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDN 391
+ AC + L GRK Q + N + ++Y + +A+ I +P+ N
Sbjct: 385 LGACASLQDLRSGRKIHNQTLKM-ACSNNVFVSSALIDMYCKCKQLPDAQMIFYSLPQKN 443
Query: 392 DNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDV 451
+ W SL+S + MVE + F M ++ + + +++ YA Q+ D
Sbjct: 444 ------IVCWNSLIS--GYSNNSKMVEA-EELFKKMPARNVASWNSIISGYAQNRQFIDA 494
Query: 452 ARVRELMKKRRMGRMPG 468
+ M G+ PG
Sbjct: 495 LKSFHAMLAS--GQSPG 509
>gi|218193370|gb|EEC75797.1| hypothetical protein OsI_12731 [Oryza sativa Indica Group]
Length = 523
Score = 234 bits (597), Expect = 8e-59, Method: Compositional matrix adjust.
Identities = 142/484 (29%), Positives = 228/484 (47%), Gaps = 13/484 (2%)
Query: 1 MKQLLQIQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIK 60
M L Q+ A L+ SGL + + + + D Y + + P F N I+
Sbjct: 48 MAHLRQLHAALVKSGLARDPIAASRAVAFCAGDGRDAAYAARLVRHHPRPNAFMWNTAIR 107
Query: 61 AYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDF 120
A ++ P V ++ M+ + P TF SLF + A+ G G HG+ +K G+
Sbjct: 108 ALADGPGPGAAVALFVDMLGSPTPPERRTFPSLFAAYARLGRAGDGAGLHGMVVKLGLGG 167
Query: 121 ELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMP 180
+ V NS+I MY GA D A + + D ++ NS + R+G + A +FD MP
Sbjct: 168 DAYVRNSVIAMYASRGAADEAIALLARCEAFDAVACNSAIVALARAGRVDEARAVFDGMP 227
Query: 181 ERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRS 240
R V +W+ M+S YS+ +++LF M G N + SVL C +G
Sbjct: 228 ARTVATWSAMVSAYSRDSRCHDAVELFSAMQAEGVEPNANVLVSVLGCCASLGALEQGAW 287
Query: 241 VHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRN---LVCWNAMILGHCI 297
VH Y + + N ++ TAL+D+Y KC + A+ VFD+ R L WN+M+LGH +
Sbjct: 288 VHAYIDKHDVAMNALVVTALVDMYCKCGDIRKAREVFDASRSRGQAKLSSWNSMMLGHAV 347
Query: 298 HGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKI 357
HG+ E LF+ L + PD +TFI ++ A + + E + M + +
Sbjct: 348 HGQWREAAALFSELRP-----HGLRPDNVTFIAILMAYGHSGMADEAKAVLASMASEHGV 402
Query: 358 KPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMV 417
P HY C+ + A A EAE ++ MP ++ ++ +W +LLS CR G
Sbjct: 403 VPGVEHYGCLVDALARAGRLREAEGVIAAMP-----VAPDAAVWGALLSGCRLHGDAEAA 457
Query: 418 ERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLKEV 477
R A+ V DP+D Y + A G+ A VR M++ +G++PGC ++++ V
Sbjct: 458 ARAAREAVRCDPRDSGAYVLAASALARGGEARRGAAVRGRMREEGVGKVPGCSMIEVDGV 517
Query: 478 VEKL 481
V +
Sbjct: 518 VHEF 521
>gi|218193589|gb|EEC76016.1| hypothetical protein OsI_13171 [Oryza sativa Indica Group]
Length = 950
Score = 234 bits (597), Expect = 9e-59, Method: Compositional matrix adjust.
Identities = 140/415 (33%), Positives = 220/415 (53%), Gaps = 12/415 (2%)
Query: 70 QGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLI 129
+ V Y QM+ +G PN F S+ G+CA + G H LK + V ++LI
Sbjct: 361 EAVSLYSQMLADGCRPNISCFSSVLGACASLQDLRSGRKIHNQTLKMACSNNVFVSSALI 420
Query: 130 NMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNI 189
+MY + A+ +F + ++++ WNS++SG+ + M A ELF MP RNV SWN
Sbjct: 421 DMYCKCKQLPDAQMIFYSLPQKNIVCWNSLISGYSNNSKMVEAEELFKKMPARNVASWNS 480
Query: 190 MISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTS 249
+ISGY+++ +LK F M+ SG + T +SVL AC G+ VH ++
Sbjct: 481 IISGYAQNRQFIDALKSFHAMLASGQSPGEITFSSVLLACASLCSLEMGKMVHAKIIKLG 540
Query: 250 LKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFT 309
+K +I + TAL D+Y+K ++ ++RVF M RN V W AMI G +G EE I LF
Sbjct: 541 IKESIFVGTALSDMYAKSGDLDSSKRVFYEMPKRNDVAWTAMIQGLAENGFAEESILLFE 600
Query: 310 ALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMAN 369
+++ I+P+E TF+ ++ AC + L+ YF +M+ I P HY CM +
Sbjct: 601 DMIS-----AGITPNEQTFLAILFACSHSGLVEHAMHYF-EMMQACGISPKAKHYTCMVD 654
Query: 370 LYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDP 429
+ A A EAE++L K+ ++ S W +LLS C M ER AK ++D
Sbjct: 655 VLARAGHLAEAEDLLLKIESKSEANS-----WAALLSACNIYRNKEMGERAAKRLQELDK 709
Query: 430 QDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLK-EVVEKLKV 483
+ + Y L N+YA G+W+D A +R LMK + + GC V ++ E ++K+++
Sbjct: 710 DNTAGYVLLSNMYASCGKWKDAAEMRILMKGINLKKDGGCSWVQIRDEQLQKIQL 764
Score = 180 bits (457), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 110/377 (29%), Positives = 185/377 (49%), Gaps = 34/377 (9%)
Query: 56 NAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALK 115
A+I + + +P + + +M+ G PN T VS+ +C G + GLA+K
Sbjct: 214 TAMIAGFVLNELPKDALGVFHEMLSCGVSPNEITLVSVIKACIGAGEFDLAMSIVGLAMK 273
Query: 116 -NGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHE 174
N +D L V NSLI +Y G D AR MF +M RD++SW +++ + GD+ A
Sbjct: 274 SNLLDKNLGVRNSLITLYLRKGDADAARRMFDEMEVRDVVSWTALLDVYAELGDLEGARR 333
Query: 175 LFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSAR 234
+ D MPERN VSW +++ + + GN ++ L+ +M+ G R N +SVL AC
Sbjct: 334 VLDEMPERNEVSWGTLVARHEQKGNAKEAVSLYSQMLADGCRPNISCFSSVLGACASLQD 393
Query: 235 FNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILG 294
GR +H T++ + N+ + +ALID+Y KC+++ AQ +F S+ +N+VCWN++I G
Sbjct: 394 LRSGRKIHNQTLKMACSNNVFVSSALIDMYCKCKQLPDAQMIFYSLPQKNIVCWNSLISG 453
Query: 295 HCIHGKPEEGIKLFTALVNGTVA--------------------------GGSISPDEITF 328
+ + K E +LF + VA SP EITF
Sbjct: 454 YSNNSKMVEAEELFKKMPARNVASWNSIISGYAQNRQFIDALKSFHAMLASGQSPGEITF 513
Query: 329 IGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMP 388
V+ AC L G+ ++I IK + ++++YA + + ++ + +MP
Sbjct: 514 SSVLLACASLCSLEMGKMVHAKIIKL-GIKESIFVGTALSDMYAKSGDLDSSKRVFYEMP 572
Query: 389 EDNDNMSFESIMWVSLL 405
+ ND + W +++
Sbjct: 573 KRND------VAWTAMI 583
Score = 97.4 bits (241), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 89/377 (23%), Positives = 157/377 (41%), Gaps = 80/377 (21%)
Query: 155 SWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGN-----------PGCS 203
+++ +V HV++GD+ +A LFD MPER+VVS+ M+ K G+ P CS
Sbjct: 150 AYDFMVREHVKAGDIVSARRLFDGMPERSVVSYTTMVDALMKRGSVRDAVELYRQCPLCS 209
Query: 204 --------------------LKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHG 243
L +F EM+ G N+ T+ SV+ AC + F+ S+ G
Sbjct: 210 VPFFTAMIAGFVLNELPKDALGVFHEMLSCGVSPNEITLVSVIKACIGAGEFDLAMSIVG 269
Query: 244 YTVRTSLKP--------------------------------NIILDTALIDLYSKCQKVE 271
++++L +++ TAL+D+Y++ +E
Sbjct: 270 LAMKSNLLDKNLGVRNSLITLYLRKGDADAARRMFDEMEVRDVVSWTALLDVYAELGDLE 329
Query: 272 VAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGV 331
A+RV D M +RN V W ++ H G +E + L++ ++ P+ F V
Sbjct: 330 GARRVLDEMPERNEVSWGTLVARHEQKGNAKEAVSLYSQML-----ADGCRPNISCFSSV 384
Query: 332 ICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDN 391
+ AC + L GRK Q + N + ++Y + +A+ I +P+ N
Sbjct: 385 LGACASLQDLRSGRKIHNQTLKM-ACSNNVFVSSALIDMYCKCKQLPDAQMIFYSLPQKN 443
Query: 392 DNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDV 451
+ W SL+S + MVE + F M ++ + + +++ YA Q+ D
Sbjct: 444 ------IVCWNSLIS--GYSNNSKMVEA-EELFKKMPARNVASWNSIISGYAQNRQFIDA 494
Query: 452 ARVRELMKKRRMGRMPG 468
+ M G+ PG
Sbjct: 495 LKSFHAMLAS--GQSPG 509
>gi|347954496|gb|AEP33748.1| chloroplast biogenesis 19, partial [Capsella bursa-pastoris]
Length = 489
Score = 234 bits (597), Expect = 9e-59, Method: Compositional matrix adjust.
Identities = 132/407 (32%), Positives = 211/407 (51%), Gaps = 14/407 (3%)
Query: 82 GFMPNSYTFVSLFGSCA--KTGCVERGGMCHGLALKNGVD-FELPVMNSLINMYGCFGAM 138
G PN TF++L C +G G + HG A K G D + V +++ MY +
Sbjct: 55 GVEPNHITFIALLSGCGDFSSGSEALGDLLHGYACKLGHDRTHVMVGTAILGMYSKHSRV 114
Query: 139 DCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSG 198
AR +F M ++ ++WN+++ G++R+G + A ++FD MPER+++SW MI+G+ K G
Sbjct: 115 KKARLVFDYMEDKNSVTWNTMIDGYMRNGQVDNAVKMFDKMPERDLISWTAMINGFVKKG 174
Query: 199 NPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDT 258
+L FREM SG + + + + L AC + G VH Y + K N+ +
Sbjct: 175 FHEEALAWFREMQISGVKPDYVAIIAALNACTNLGALSFGLWVHRYVMSQDFKNNVKVSN 234
Query: 259 ALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAG 318
+LIDLY +C VE A+ VFD M R +V WN++I+G +G E + F +
Sbjct: 235 SLIDLYCRCGCVEFAREVFDKMEKRTVVSWNSVIVGFAANGNAHESLVYFRKMQE----- 289
Query: 319 GSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTE 378
PD +TF G + AC L+ EG +YF+ M ++I P HY C+ +LY+ A E
Sbjct: 290 EGFKPDAVTFTGALTACSHVGLVEEGLRYFQTMKRDHRISPRIEHYGCLVDLYSRAGRLE 349
Query: 379 EAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQG-AVAMVERLAKSFVDMDPQDFSRYQF 437
EA ++++ MP M ++ SLL+ CR G + ERL K D++ + S Y
Sbjct: 350 EALKVVQSMP-----MKPNEVVIGSLLAACRTHGNNTVLAERLMKHLSDVNVKGHSNYVI 404
Query: 438 LLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLKEVVEKLKVG 484
L N+YA G+WE +++R MK + + PG +++ + G
Sbjct: 405 LSNMYAADGKWEGASQMRRKMKGLGLKKQPGFSSIEIDDCTHVFMAG 451
Score = 82.4 bits (202), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 60/247 (24%), Positives = 100/247 (40%), Gaps = 32/247 (12%)
Query: 35 GSPDYTVLVFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLF 94
G D V +F + A+I + ++ + ++ +M +G P+ ++
Sbjct: 143 GQVDNAVKMFDKMPERDLISWTAMINGFVKKGFHEEALAWFREMQISGVKPDYVAIIAAL 202
Query: 95 GSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLI 154
+C G + G H + + V NSLI++Y G ++ AR +F +M R ++
Sbjct: 203 NACTNLGALSFGLWVHRYVMSQDFKNNVKVSNSLIDLYCRCGCVEFAREVFDKMEKRTVV 262
Query: 155 SWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSG 214
SWNS+ I G++ +GN SL FR+M + G
Sbjct: 263 SWNSV-------------------------------IVGFAANGNAHESLVYFRKMQEEG 291
Query: 215 FRGNDKTMASVLTACGRSARFNEG-RSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVA 273
F+ + T LTAC EG R + P I L+DLYS+ ++E A
Sbjct: 292 FKPDAVTFTGALTACSHVGLVEEGLRYFQTMKRDHRISPRIEHYGCLVDLYSRAGRLEEA 351
Query: 274 QRVFDSM 280
+V SM
Sbjct: 352 LKVVQSM 358
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 86/374 (22%), Positives = 149/374 (39%), Gaps = 96/374 (25%)
Query: 147 QMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKL 206
Q + ++SW S ++ R+G ++ A K
Sbjct: 19 QSTSETIVSWTSRITLLTRNGRLAEA-------------------------------AKE 47
Query: 207 FREMMKSGFRGNDKTMASVLTACGRSARFNE--GRSVHGYTVRTSL-KPNIILDTALIDL 263
F +M +G N T ++L+ CG + +E G +HGY + + ++++ TA++ +
Sbjct: 48 FSDMRLAGVEPNHITFIALLSGCGDFSSGSEALGDLLHGYACKLGHDRTHVMVGTAILGM 107
Query: 264 YSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLF-----------TALV 312
YSK +V+ A+ VFD M D+N V WN MI G+ +G+ + +K+F TA++
Sbjct: 108 YSKHSRVKKARLVFDYMEDKNSVTWNTMIDGYMRNGQVDNAVKMFDKMPERDLISWTAMI 167
Query: 313 NGTVAGG---------------SISPDEITFIGVICACVRAELLTEGRKYFRQMI--DFY 355
NG V G + PD + I + AC L+ G R ++ DF
Sbjct: 168 NGFVKKGFHEEALAWFREMQISGVKPDYVAIIAALNACTNLGALSFGLWVHRYVMSQDF- 226
Query: 356 KIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDN-------------DNMSFESIMWV 402
K N + +LY E A E+ KM + + + ES+++
Sbjct: 227 --KNNVKVSNSLIDLYCRCGCVEFAREVFDKMEKRTVVSWNSVIVGFAANGNAHESLVYF 284
Query: 403 SLL-------SLCRFQGA------VAMVERLAKSFVDMDPQD-----FSRYQFLLNVYAV 444
+ F GA V +VE + F M Y L+++Y+
Sbjct: 285 RKMQEEGFKPDAVTFTGALTACSHVGLVEEGLRYFQTMKRDHRISPRIEHYGCLVDLYSR 344
Query: 445 AGQWEDVARVRELM 458
AG+ E+ +V + M
Sbjct: 345 AGRLEEALKVVQSM 358
Score = 39.3 bits (90), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 39/211 (18%), Positives = 90/211 (42%), Gaps = 6/211 (2%)
Query: 12 ITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSNSCVPDQG 71
+ S F NN + +L+ G ++ VF + N+VI ++ + +
Sbjct: 221 VMSQDFKNNVKVSNSLIDLYCRCGCVEFAREVFDKMEKRTVVSWNSVIVGFAANGNAHES 280
Query: 72 VVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERG-GMCHGLALKNGVDFELPVMNSLIN 130
+V++ +M + GF P++ TF +C+ G VE G + + + + L++
Sbjct: 281 LVYFRKMQEEGFKPDAVTFTGALTACSHVGLVEEGLRYFQTMKRDHRISPRIEHYGCLVD 340
Query: 131 MYGCFGAMDCARNMF--VQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNV---V 185
+Y G ++ A + + M P +++ + + + + A L + + NV
Sbjct: 341 LYSRAGRLEEALKVVQSMPMKPNEVVIGSLLAACRTHGNNTVLAERLMKHLSDVNVKGHS 400
Query: 186 SWNIMISGYSKSGNPGCSLKLFREMMKSGFR 216
++ I+ + Y+ G + ++ R+M G +
Sbjct: 401 NYVILSNMYAADGKWEGASQMRRKMKGLGLK 431
>gi|242042383|ref|XP_002468586.1| hypothetical protein SORBIDRAFT_01g048560 [Sorghum bicolor]
gi|241922440|gb|EER95584.1| hypothetical protein SORBIDRAFT_01g048560 [Sorghum bicolor]
Length = 581
Score = 234 bits (597), Expect = 9e-59, Method: Compositional matrix adjust.
Identities = 124/333 (37%), Positives = 193/333 (57%), Gaps = 10/333 (3%)
Query: 152 DLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMM 211
D++SW ++V G V+ G + A ELFD MPERN+VSWN M+SGY K+G +L++F EM
Sbjct: 170 DVVSWTTMVGGLVKLGRVDDARELFDGMPERNLVSWNAMMSGYVKTGRFLDALEVFDEMR 229
Query: 212 KSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVE 271
G GN A+ + AC + GR VH + R+ ++ + L TA++D+Y KC VE
Sbjct: 230 ARGVDGNAFVAATAVVACTGAGALARGREVHRWVERSGIEMDDKLATAVVDMYCKCGCVE 289
Query: 272 VAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGV 331
A RVF+++ R L WN MI G +HG+ E+ + LF G + ++PD++T + V
Sbjct: 290 EAWRVFEALPARGLTSWNCMIGGFAVHGRGEDALNLF-----GLMEREGVAPDDVTLVNV 344
Query: 332 ICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDN 391
+ AC A +++EGR YF + Y I P HY CM +LY A EEA+++++ MP +
Sbjct: 345 LTACAHAGMVSEGRHYFNYISQRYGIVPKMEHYGCMVDLYGRAGQLEEAKKVIQDMPMEP 404
Query: 392 DNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDV 451
D ++ S + G V + E + +++DPQ+ RY L N+ A AG+WEDV
Sbjct: 405 DVGVLGALFGAS-----KIHGDVDLGEAIGWRVIELDPQNSGRYVLLANLLATAGRWEDV 459
Query: 452 ARVRELMKKRRMGRMPGCRLVDLKEVVEKLKVG 484
ARVR LM +R + + G +++++ V + + G
Sbjct: 460 ARVRRLMDERNVSKEAGRSVIEVQGEVCEFQCG 492
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 56/251 (22%), Positives = 105/251 (41%), Gaps = 33/251 (13%)
Query: 56 NAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALK 115
NA++ Y + + + +M G N++ + +C G + RG H +
Sbjct: 206 NAMMSGYVKTGRFLDALEVFDEMRARGVDGNAFVAATAVVACTGAGALARGREVHRWVER 265
Query: 116 NGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHEL 175
+G++ + + ++++MY G ++ A +F + R L SWN
Sbjct: 266 SGIEMDDKLATAVVDMYCKCGCVEEAWRVFEALPARGLTSWNC----------------- 308
Query: 176 FDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARF 235
MI G++ G +L LF M + G +D T+ +VLTAC +
Sbjct: 309 --------------MIGGFAVHGRGEDALNLFGLMEREGVAPDDVTLVNVLTACAHAGMV 354
Query: 236 NEGRSVHGY-TVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMA-DRNLVCWNAMIL 293
+EGR Y + R + P + ++DLY + ++E A++V M + ++ A+
Sbjct: 355 SEGRHYFNYISQRYGIVPKMEHYGCMVDLYGRAGQLEEAKKVIQDMPMEPDVGVLGALFG 414
Query: 294 GHCIHGKPEEG 304
IHG + G
Sbjct: 415 ASKIHGDVDLG 425
>gi|449490721|ref|XP_004158687.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At4g21065-like [Cucumis sativus]
Length = 609
Score = 234 bits (597), Expect = 9e-59, Method: Compositional matrix adjust.
Identities = 149/484 (30%), Positives = 233/484 (48%), Gaps = 43/484 (8%)
Query: 3 QLLQIQAHLITSGLFFNNSFWTINLLKHSADFGSP-DYTVLVFKCINNPGTFCVNAVIKA 61
+L QI A I G+ N + +L+ +P + +F I P F N +I+
Sbjct: 50 KLKQIHAFSIRHGVPPQNPDFNKHLIFALVSLSAPMSFAAQIFNQIQAPNIFTWNTMIRG 109
Query: 62 YSNSCVPDQGVVFYLQM-IKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDF 120
++ S P V + QM + +P+++TF LF + AK V G H + ++NG D
Sbjct: 110 FAESENPSPAVELFSQMHAASSILPDTHTFPFLFKAVAKLMDVSLGEGIHSVVVRNGFDS 169
Query: 121 ELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMP 180
V NSL++MY G++ A +F MS RD ++WNS+
Sbjct: 170 LRFVQNSLVHMYSVLGSLXSAYQVFEIMSYRDRVAWNSV--------------------- 208
Query: 181 ERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRS 240
I+G++ +G P +L L+REM G + TM S+L+AC G
Sbjct: 209 ----------INGFALNGMPNEALTLYREMGSEGVEPDGFTMVSLLSACVELGALALGER 258
Query: 241 VHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGK 300
VH Y V+ L N AL+DLYSKC AQ+VFD M +R++V W ++I+G ++G
Sbjct: 259 VHMYMVKVGLVQNQHASNALLDLYSKCGNFRDAQKVFDEMEERSVVSWTSLIVGLAVNGL 318
Query: 301 PEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPN 360
E +KLF G + + P EITF+GV+ AC +L EG YFR+M + Y I P
Sbjct: 319 GNEALKLF-----GELERQGLKPSEITFVGVLYACSHCGMLDEGFNYFRRMKEEYGILPR 373
Query: 361 FAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERL 420
H+ CM +L A +A + +R MP + +++W +LL C G + + E
Sbjct: 374 IEHHGCMVDLLCRAGKVGDAYDYIRNMPVPPN-----AVIWRTLLGACTIHGHLELGEVA 428
Query: 421 AKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLKEVVEK 480
++ + + L N+YA +W DV VR++M + + + PG LV+LK V +
Sbjct: 429 RAEIQRLEQRHSGDFVLLSNLYASERRWLDVQNVRKIMLMKGVKKTPGYSLVELKNRVYE 488
Query: 481 LKVG 484
+G
Sbjct: 489 FIMG 492
>gi|449516814|ref|XP_004165441.1| PREDICTED: pentatricopeptide repeat-containing protein At5g19020,
mitochondrial-like isoform 1 [Cucumis sativus]
Length = 703
Score = 234 bits (596), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 145/453 (32%), Positives = 224/453 (49%), Gaps = 15/453 (3%)
Query: 19 NNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQM 78
N W + +LK G D +F+ I F +I + + ++ Y M
Sbjct: 258 NTVSWNV-MLKGYVKSGLVDQARELFERIPERDVFSWAIMIDGFVQMKRLRKALLLYSAM 316
Query: 79 IKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNG-VDFELPVMNSLINMYGCFGA 137
K+ PN V L +C ++ +E G H L +KNG V F+ + ++I+ Y
Sbjct: 317 RKSDLHPNEVLIVDLLSACGQSVSIEEGRQFHSLIVKNGFVCFDF-IQATIISFYAACRR 375
Query: 138 MDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKS 197
+D A + L S N ++ G ++G + A ++FD+MPE++V SW+ MISGY+++
Sbjct: 376 IDLAYLQYQMSDKSHLTSSNVMIVGFTKNGMIDQARQIFDMMPEKDVFSWSTMISGYAQN 435
Query: 198 GNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILD 257
P +L LF M+ S N+ TM SV +A + EGR H Y + N L
Sbjct: 436 ELPDVALDLFHGMIDSKVEPNEITMVSVFSAIAALGKLPEGRWAHEYVCNKVIPLNDNLS 495
Query: 258 TALIDLYSKCQKVEVAQRVFDSMADRNLVC--WNAMILGHCIHGKPEEGIKLFTALVNGT 315
A+ID+Y+KC ++ A VF + D+ WNA+I G +HG +++F+ L
Sbjct: 496 AAIIDMYAKCGSIDTALDVFRQIKDKTSTVSPWNAIICGLAMHGHANLSLEIFSNLQRR- 554
Query: 316 VAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAE 375
SI + ITF+GV+ AC A L+ G +YF M + ++PN HY C+ +L
Sbjct: 555 ----SIKLNSITFLGVLSACCHAGLVEVGERYFWSMKTQHGVEPNIKHYGCLVDLLGRVG 610
Query: 376 LTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRY 435
EAEEI+R MP M + ++W +LL+ R G V + ER A++ + P
Sbjct: 611 RLREAEEIVRTMP-----MKADVVIWGTLLASSRTHGEVEIGERAAENLARLQPSHGPGR 665
Query: 436 QFLLNVYAVAGQWEDVARVRELMKKRRMGRMPG 468
L N+YA AG WED A VR ++ +RM R PG
Sbjct: 666 VLLSNLYADAGLWEDAALVRRAIQSQRMIRSPG 698
Score = 142 bits (358), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 88/357 (24%), Positives = 164/357 (45%), Gaps = 37/357 (10%)
Query: 70 QGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLI 129
+ + + M G PN T S+ +C+ G + M H L +K + + +L+
Sbjct: 176 EAIEVFKDMRSAGVAPNEVTMASVMSACSHIGGIWNCRMLHALVIKLHFFGLVLISTNLL 235
Query: 130 NMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNI 189
+MY F ++ + +F +M R+ +SWN ++ G+V+SG + A ELF+ +PER+V SW I
Sbjct: 236 HMYCVFSSLKDTKRLFNEMPVRNTVSWNVMLKGYVKSGLVDQARELFERIPERDVFSWAI 295
Query: 190 MISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTS 249
MI G+ + +L L+ M KS N+ + +L+ACG+S EGR H V+
Sbjct: 296 MIDGFVQMKRLRKALLLYSAMRKSDLHPNEVLIVDLLSACGQSVSIEEGRQFHSLIVKNG 355
Query: 250 LKPNIILDTALIDLYSKCQKVEV-------------------------------AQRVFD 278
+ +I Y+ C+++++ A+++FD
Sbjct: 356 FVCFDFIQATIISFYAACRRIDLAYLQYQMSDKSHLTSSNVMIVGFTKNGMIDQARQIFD 415
Query: 279 SMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRA 338
M ++++ W+ MI G+ + P+ + LF +++ V P+EIT + V A
Sbjct: 416 MMPEKDVFSWSTMISGYAQNELPDVALDLFHGMIDSKV-----EPNEITMVSVFSAIAAL 470
Query: 339 ELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMS 395
L EGR + + + I N + ++YA + A ++ R++ + +S
Sbjct: 471 GKLPEGR-WAHEYVCNKVIPLNDNLSAAIIDMYAKCGSIDTALDVFRQIKDKTSTVS 526
Score = 127 bits (319), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 78/290 (26%), Positives = 142/290 (48%), Gaps = 26/290 (8%)
Query: 89 TFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQM 148
+ VS CA + + G H + LK G + ++NSLINMY G + AR +F
Sbjct: 63 SVVSALKYCASSSAISSGQQIHAIVLKYGFNSNTFILNSLINMYVKCGLLSSARLLFDSC 122
Query: 149 SPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFR 208
S D +S N ++SG+V+ + A +LF MPER VS+ MI G +++ G ++++F+
Sbjct: 123 SVLDSVSCNIMMSGYVKLRQLENARQLFAKMPERGCVSYTTMILGLAQNDCWGEAIEVFK 182
Query: 209 EMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQ 268
+M +G N+ TMASV++AC R +H ++ +++ T L+ +Y
Sbjct: 183 DMRSAGVAPNEVTMASVMSACSHIGGIWNCRMLHALVIKLHFFGLVLISTNLLHMYCVFS 242
Query: 269 KVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLF-----------TALVNGTVA 317
++ +R+F+ M RN V WN M+ G+ G ++ +LF +++G V
Sbjct: 243 SLKDTKRLFNEMPVRNTVSWNVMLKGYVKSGLVDQARELFERIPERDVFSWAIMIDGFVQ 302
Query: 318 ---------------GGSISPDEITFIGVICACVRAELLTEGRKYFRQMI 352
+ P+E+ + ++ AC ++ + EGR++ ++
Sbjct: 303 MKRLRKALLLYSAMRKSDLHPNEVLIVDLLSACGQSVSIEEGRQFHSLIV 352
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 57/293 (19%), Positives = 111/293 (37%), Gaps = 64/293 (21%)
Query: 221 TMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSM 280
++ S L C S+ + G+ +H ++ N + +LI++Y KC + A+ +FDS
Sbjct: 63 SVVSALKYCASSSAISSGQQIHAIVLKYGFNSNTFILNSLINMYVKCGLLSSARLLFDSC 122
Query: 281 ADRNLVCWNAMILGHC-----------IHGKPEEGIKLFTALVNGTVA------------ 317
+ + V N M+ G+ PE G +T ++ G
Sbjct: 123 SVLDSVSCNIMMSGYVKLRQLENARQLFAKMPERGCVSYTTMILGLAQNDCWGEAIEVFK 182
Query: 318 ---GGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFY-----KIKPNFAHYWC--- 366
++P+E+T V+ AC + R +I + I N H +C
Sbjct: 183 DMRSAGVAPNEVTMASVMSACSHIGGIWNCRMLHALVIKLHFFGLVLISTNLLHMYCVFS 242
Query: 367 ----------------------MANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSL 404
M Y + L ++A E+ ++PE D S+ +IM
Sbjct: 243 SLKDTKRLFNEMPVRNTVSWNVMLKGYVKSGLVDQARELFERIPE-RDVFSW-AIMIDGF 300
Query: 405 LSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVREL 457
+ + R + A+ + + KS D+ P + ++++ + GQ + R+
Sbjct: 301 VQMKRLRKALLLYSAMRKS--DLHPNEV----LIVDLLSACGQSVSIEEGRQF 347
>gi|225456517|ref|XP_002281018.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Vitis vinifera]
Length = 624
Score = 234 bits (596), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 139/454 (30%), Positives = 228/454 (50%), Gaps = 44/454 (9%)
Query: 56 NAVIKAYSNSCVPDQGVVFYLQMIKNGFM-PNSYTFVSLFGSCAKTGCVERGGMCHGLAL 114
N++I Y S + + + +++ +G + P+ T VS C + G ++ G HGL
Sbjct: 199 NSMISGYLQSHRYELALKVFWELLGDGSLSPDEVTLVSALSVCGRLGLLDLGKKIHGLFT 258
Query: 115 KNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHE 174
+G ++ V +SLI+MY + G + A +
Sbjct: 259 GSGFVLDVFVGSSLIDMYS-------------------------------KCGQIEDARK 287
Query: 175 LFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSAR 234
+FD +P RN V W MI+GY++S +++LFREM GF + T+A VL+ACG
Sbjct: 288 VFDRIPHRNTVCWTSMIAGYAQSDLFKEAIELFREMQIGGFAADAATIACVLSACGHWGA 347
Query: 235 FNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILG 294
+GR +H Y R S++ ++ ALI +YSKC ++ A +F + ++ W+A+I G
Sbjct: 348 LAQGRWIHLYCERNSIEMDLNARNALIGMYSKCGDIQKALEIFHGLTQPDIFSWSAVISG 407
Query: 295 HCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDF 354
++G+ ++ + LF+ + + I P+EITF+GV+CAC + +G YF M
Sbjct: 408 LAMNGESDKALHLFSQMEMIS----DIRPNEITFLGVLCACNHGGFVDKGLYYFNAMTQI 463
Query: 355 YKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAV 414
Y + P HY CM +L A L EAE+ +R +P D ++W SLL CR G +
Sbjct: 464 YNLTPGIEHYGCMVDLLGRANLLVEAEKFIRTLPIQPD-----VVIWRSLLFACRNHGNI 518
Query: 415 AMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDL 474
+ E AK +++P+ L NVYA A +W DV RVR+ M +R+ + PGC V++
Sbjct: 519 ELAEFAAKQIEELEPRRCGARVLLSNVYASASRWGDVKRVRKDMATQRIKKQPGCSFVEI 578
Query: 475 KEVVEKLKVG---HFWRGGMKEEVNKMMECRQSR 505
+V +L V H G + E + + + QS+
Sbjct: 579 DGLVHELFVADRSHPEMGAIYETMISINKALQSK 612
Score = 165 bits (418), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 107/347 (30%), Positives = 173/347 (49%), Gaps = 47/347 (13%)
Query: 6 QIQAHLITSGLFFN---NSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAY 62
QI +H I SG+F + +S L H DF ++ +F I+ P F N + +AY
Sbjct: 46 QILSHAIASGVFRDPVVSSKLLYYSLSHDHDFA---FSRTLFFQIHKPNVFSWNFMFRAY 102
Query: 63 SNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFEL 122
S S P + + Y M++NG +P++Y+F + +CA+ + +G H LK GV ++
Sbjct: 103 SRSSFPAETIALYNLMLRNGTLPDNYSFPFVLKACARLSLLHKGREIHSSTLKLGVHLDV 162
Query: 123 PVMNSLINMYGCFGAMDCARNMFVQMSP---RDLISWNSIVSGHVRSGDMSAAHELFDIM 179
V N+LI+ + GA++ AR +F M P RD++SWNS++SG+++S A
Sbjct: 163 FVQNALISAFSSCGAVEAARAVF-DMLPALVRDVVSWNSMISGYLQSHRYELA------- 214
Query: 180 PERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDK-TMASVLTACGRSARFNEG 238
LK+F E++ G D+ T+ S L+ CGR + G
Sbjct: 215 ------------------------LKVFWELLGDGSLSPDEVTLVSALSVCGRLGLLDLG 250
Query: 239 RSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIH 298
+ +HG + ++ + ++LID+YSKC ++E A++VFD + RN VCW +MI G+
Sbjct: 251 KKIHGLFTGSGFVLDVFVGSSLIDMYSKCGQIEDARKVFDRIPHRNTVCWTSMIAGYAQS 310
Query: 299 GKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGR 345
+E I+LF + G A D T V+ AC L +GR
Sbjct: 311 DLFKEAIELFREMQIGGFAA-----DAATIACVLSACGHWGALAQGR 352
Score = 114 bits (286), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 68/241 (28%), Positives = 123/241 (51%), Gaps = 13/241 (5%)
Query: 168 DMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLT 227
D + + LF + + NV SWN M YS+S P ++ L+ M+++G ++ + VL
Sbjct: 76 DFAFSRTLFFQIHKPNVFSWNFMFRAYSRSSFPAETIALYNLMLRNGTLPDNYSFPFVLK 135
Query: 228 ACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMAD--RNL 285
AC R + ++GR +H T++ + ++ + ALI +S C VE A+ VFD + R++
Sbjct: 136 ACARLSLLHKGREIHSSTLKLGVHLDVFVQNALISAFSSCGAVEAARAVFDMLPALVRDV 195
Query: 286 VCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGR 345
V WN+MI G+ + E +K+F L + GS+SPDE+T + + C R LL G+
Sbjct: 196 VSWNSMISGYLQSHRYELALKVFWEL----LGDGSLSPDEVTLVSALSVCGRLGLLDLGK 251
Query: 346 KYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLL 405
K + F + ++Y+ E+A ++ ++P N ++ W S++
Sbjct: 252 KIHGLFTGSGFVLDVFVGS-SLIDMYSKCGQIEDARKVFDRIPHRN------TVCWTSMI 304
Query: 406 S 406
+
Sbjct: 305 A 305
Score = 73.6 bits (179), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 64/294 (21%), Positives = 119/294 (40%), Gaps = 32/294 (10%)
Query: 11 LITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSNSCVPDQ 70
L T F + F +L+ + G + VF I + T C ++I Y+ S + +
Sbjct: 256 LFTGSGFVLDVFVGSSLIDMYSKCGQIEDARKVFDRIPHRNTVCWTSMIAGYAQSDLFKE 315
Query: 71 GVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLIN 130
+ + +M GF ++ T + +C G + +G H +N ++ +L N+LI
Sbjct: 316 AIELFREMQIGGFAADAATIACVLSACGHWGALAQGRWIHLYCERNSIEMDLNARNALIG 375
Query: 131 MYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIM 190
MY G + A +F ++ D+ SW++++SG +G+ A LF M
Sbjct: 376 MYSKCGDIQKALEIFHGLTQPDIFSWSAVISGLAMNGESDKALHLFSQME---------- 425
Query: 191 ISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEG-RSVHGYTVRTS 249
M S R N+ T VL AC ++G + T +
Sbjct: 426 --------------------MISDIRPNEITFLGVLCACNHGGFVDKGLYYFNAMTQIYN 465
Query: 250 LKPNIILDTALIDLYSKCQKVEVAQRVFDSMADR-NLVCWNAMILGHCIHGKPE 302
L P I ++DL + + A++ ++ + ++V W +++ HG E
Sbjct: 466 LTPGIEHYGCMVDLLGRANLLVEAEKFIRTLPIQPDVVIWRSLLFACRNHGNIE 519
>gi|225453758|ref|XP_002270092.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Vitis vinifera]
Length = 687
Score = 234 bits (596), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 128/447 (28%), Positives = 236/447 (52%), Gaps = 45/447 (10%)
Query: 56 NAVIKAYSNSCVPDQGVVFYLQMIK-NGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLAL 114
N +I A+ N + ++ +M K + P+ T VSL +CA+ G +ERG H +
Sbjct: 181 NIMINAHLNKGLSEKAFDLLDEMTKLDNLRPDEVTMVSLVPACAQLGNLERGKFLHSYSK 240
Query: 115 KNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHE 174
+ G+D L V N++++MY + D+ +A E
Sbjct: 241 ELGLDENLRVNNAILDMY-------------------------------CKCDDIESAQE 269
Query: 175 LFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSAR 234
+F+ + E++V+SW M+SG +KSG +L LF++M + ++ T+ VL+AC ++
Sbjct: 270 VFNRIREKDVLSWTSMLSGLAKSGYFQEALALFQKMQLNKIELDEITLVGVLSACAQTGA 329
Query: 235 FNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILG 294
++G+ +H + + +++L+TAL+D+Y+KC +++A +VF M RN+ WNA+I G
Sbjct: 330 LDQGKYIHLLIDKFEINCDLVLETALVDMYAKCGSIDLALQVFRRMRVRNVFTWNALIGG 389
Query: 295 HCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDF 354
+HG E+ I LF + + + PD++TFI ++CAC A L+ EG F+ M +
Sbjct: 390 LAMHGHGEDAISLFDQMEH-----DKLMPDDVTFIALLCACSHAGLVDEGLAMFQAMKNK 444
Query: 355 YKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAV 414
++I+P HY C+ +L A ++A + MP + S++W +LL CR G
Sbjct: 445 FQIEPRMEHYGCVVDLLCRARKVDDALAFIENMP-----IKANSVLWATLLGACRSGGHF 499
Query: 415 AMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDL 474
+ E++ + ++++P RY L N+YA QW+ ++R+ MK + + + PGC ++L
Sbjct: 500 DLAEKIGRRVIELEPDSCGRYVMLSNLYAGVSQWDHALKLRKQMKNKGIEKTPGCSWIEL 559
Query: 475 KEVVEKLKVGHFWRGGMK-EEVNKMME 500
++ + G R ++ E++ M+E
Sbjct: 560 NGMIHQFVAGD--RSHLQTEQIYAMIE 584
Score = 168 bits (425), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 108/384 (28%), Positives = 184/384 (47%), Gaps = 42/384 (10%)
Query: 5 LQIQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSN 64
L ++ HL+ + LF ++ + L HS D +Y +F + NP F N +I+ Y+
Sbjct: 33 LLLRTHLLHNPLF-SSKLISFLALSHSGDL---NYARKLFTQMQNPDPFICNTMIRGYAR 88
Query: 65 SCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPV 124
S P + V Y M++ G ++YT+ + +CA+ G V+ G H LKNG +L V
Sbjct: 89 SQNPYEAVSLYYFMVERGVPVDNYTYPFVLAACARLGAVKLGRRFHCEVLKNGFGSDLFV 148
Query: 125 MNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNV 184
+N+LI Y G+ CA ++FD R+V
Sbjct: 149 INALIQFYHNCGSFGCAC-------------------------------DVFDESTVRDV 177
Query: 185 VSWNIMISGYSKSGNPGCSLKLFREMMK-SGFRGNDKTMASVLTACGRSARFNEGRSVHG 243
V+WNIMI+ + G + L EM K R ++ TM S++ AC + G+ +H
Sbjct: 178 VTWNIMINAHLNKGLSEKAFDLLDEMTKLDNLRPDEVTMVSLVPACAQLGNLERGKFLHS 237
Query: 244 YTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEE 303
Y+ L N+ ++ A++D+Y KC +E AQ VF+ + +++++ W +M+ G G +E
Sbjct: 238 YSKELGLDENLRVNNAILDMYCKCDDIESAQEVFNRIREKDVLSWTSMLSGLAKSGYFQE 297
Query: 304 GIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAH 363
+ LF + I DEIT +GV+ AC + L +G KY +ID ++I +
Sbjct: 298 ALALFQKM-----QLNKIELDEITLVGVLSACAQTGALDQG-KYIHLLIDKFEINCDLVL 351
Query: 364 YWCMANLYAGAELTEEAEEILRKM 387
+ ++YA + A ++ R+M
Sbjct: 352 ETALVDMYAKCGSIDLALQVFRRM 375
Score = 101 bits (251), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 71/268 (26%), Positives = 123/268 (45%), Gaps = 15/268 (5%)
Query: 165 RSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMAS 224
SGD++ A +LF M + N MI GY++S NP ++ L+ M++ G ++ T
Sbjct: 57 HSGDLNYARKLFTQMQNPDPFICNTMIRGYARSQNPYEAVSLYYFMVERGVPVDNYTYPF 116
Query: 225 VLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRN 284
VL AC R GR H ++ ++ + ALI Y C A VFD R+
Sbjct: 117 VLAACARLGAVKLGRRFHCEVLKNGFGSDLFVINALIQFYHNCGSFGCACDVFDESTVRD 176
Query: 285 LVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEG 344
+V WN MI H G E+ L + ++ PDE+T + ++ AC + L G
Sbjct: 177 VVTWNIMINAHLNKGLSEKAFDLLDEMTKLD----NLRPDEVTMVSLVPACAQLGNLERG 232
Query: 345 RKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSL 404
K+ + N + ++Y + E A+E+ ++ E + + W S+
Sbjct: 233 -KFLHSYSKELGLDENLRVNNAILDMYCKCDDIESAQEVFNRIREK------DVLSWTSM 285
Query: 405 LS-LCR---FQGAVAMVERLAKSFVDMD 428
LS L + FQ A+A+ +++ + +++D
Sbjct: 286 LSGLAKSGYFQEALALFQKMQLNKIELD 313
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 57/259 (22%), Positives = 111/259 (42%), Gaps = 34/259 (13%)
Query: 43 VFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGC 102
VF I +++ + S + + + +M N + T V + +CA+TG
Sbjct: 270 VFNRIREKDVLSWTSMLSGLAKSGYFQEALALFQKMQLNKIELDEITLVGVLSACAQTGA 329
Query: 103 VERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSG 162
+++G H L K ++ +L + +L++MY G++D A +F +M R++ +WN+++ G
Sbjct: 330 LDQGKYIHLLIDKFEINCDLVLETALVDMYAKCGSIDLALQVFRRMRVRNVFTWNALIGG 389
Query: 163 HVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTM 222
G A LFD M ++ +D T
Sbjct: 390 LAMHGHGEDAISLFDQMEHDKLMP-------------------------------DDVTF 418
Query: 223 ASVLTACGRSARFNEGRSV-HGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMA 281
++L AC + +EG ++ + ++P + ++DL + +KV+ A ++M
Sbjct: 419 IALLCACSHAGLVDEGLAMFQAMKNKFQIEPRMEHYGCVVDLLCRARKVDDALAFIENMP 478
Query: 282 DR-NLVCWNAMILGHCIHG 299
+ N V W A +LG C G
Sbjct: 479 IKANSVLW-ATLLGACRSG 496
Score = 44.3 bits (103), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 53/206 (25%), Positives = 87/206 (42%), Gaps = 27/206 (13%)
Query: 27 LLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPN 86
L+ A GS D + VF+ + F NA+I + + + + QM + MP+
Sbjct: 355 LVDMYAKCGSIDLALQVFRRMRVRNVFTWNALIGGLAMHGHGEDAISLFDQMEHDKLMPD 414
Query: 87 SYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDC-ARNM- 144
TF++L +C+ G V+ G+ A+KN E P M YGC + C AR +
Sbjct: 415 DVTFIALLCACSHAGLVDE-GLAMFQAMKNKFQIE-PRMEH----YGCVVDLLCRARKVD 468
Query: 145 ----FVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPE--RNVVSWN-------IMI 191
F++ P I NS++ + S H FD+ + R V+ +M+
Sbjct: 469 DALAFIENMP---IKANSVLWATLLGACRSGGH--FDLAEKIGRRVIELEPDSCGRYVML 523
Query: 192 SG-YSKSGNPGCSLKLFREMMKSGFR 216
S Y+ +LKL ++M G
Sbjct: 524 SNLYAGVSQWDHALKLRKQMKNKGIE 549
>gi|328774749|gb|AEB39774.1| pentatricopeptide repeat protein 65 [Funaria hygrometrica]
Length = 771
Score = 234 bits (596), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 131/411 (31%), Positives = 203/411 (49%), Gaps = 41/411 (9%)
Query: 58 VIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNG 117
+I Y+ D + +M + PN T+ S+ C +E G H +++G
Sbjct: 269 LIAGYAQQGQVDVALELLEKMQQAEVAPNKITYTSILQGCTTPLALEHGKKVHRYIIQSG 328
Query: 118 VDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFD 177
E+ V+N+LI MY + G + A +LF
Sbjct: 329 YGREIWVVNALITMY-------------------------------CKCGGLKEARKLFG 357
Query: 178 IMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNE 237
+P R+VV+W M++GY++ G ++ LFR M + G + + T S LT+C A E
Sbjct: 358 DLPHRDVVTWTAMVTGYAQLGFHDEAIDLFRRMQQQGIKPDKMTFTSALTSCSSPAFLQE 417
Query: 238 GRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCI 297
G+S+H V ++ L +AL+ +Y+KC ++ A+ VF+ M++RN+V W AMI G
Sbjct: 418 GKSIHQQLVHAGYSLDVYLQSALVSMYAKCGSMDDARLVFNQMSERNVVAWTAMITGCAQ 477
Query: 298 HGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKI 357
HG+ E ++ F + I PD++TF V+ AC L+ EGRK+FR M Y I
Sbjct: 478 HGRCREALEYFEQMKK-----QGIKPDKVTFTSVLSACTHVGLVEEGRKHFRSMYLDYGI 532
Query: 358 KPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMV 417
KP HY C +L A EEAE ++ MP +W +LLS CR V
Sbjct: 533 KPMVEHYSCFVDLLGRAGHLEEAENVILTMP-----FQPGPSVWGALLSACRIHSDVERG 587
Query: 418 ERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPG 468
ER A++ + +DP D Y L N+YA AG++ED +VR++M+KR + + PG
Sbjct: 588 ERAAENVLKLDPDDDGAYVALSNIYAAAGRYEDAEKVRQVMEKRDVVKEPG 638
Score = 145 bits (366), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 108/438 (24%), Positives = 189/438 (43%), Gaps = 50/438 (11%)
Query: 1 MKQLLQIQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIK 60
++Q ++ A ++ SG+ N + LL A GS VF I + A+I+
Sbjct: 112 LEQGREVHAAILKSGIQ-PNRYLENTLLSMYAKCGSLTDARRVFDGIRDRNIVSWTAMIE 170
Query: 61 AYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDF 120
A+ + Y M G P+ TFVSL + ++ G H K G++
Sbjct: 171 AFVAGNQNLEAYKCYETMKLAGCKPDKVTFVSLLNAFTNPELLQVGQKVHMEIAKAGLEL 230
Query: 121 ELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMP 180
E V SL+ MY + GD+S A +FD +P
Sbjct: 231 EPRVGTSLVGMYA-------------------------------KCGDISKAQVIFDKLP 259
Query: 181 ERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRS 240
E+NVV+W ++I+GY++ G +L+L +M ++ N T S+L C G+
Sbjct: 260 EKNVVTWTLLIAGYAQQGQVDVALELLEKMQQAEVAPNKITYTSILQGCTTPLALEHGKK 319
Query: 241 VHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGK 300
VH Y +++ I + ALI +Y KC ++ A+++F + R++V W AM+ G+ G
Sbjct: 320 VHRYIIQSGYGREIWVVNALITMYCKCGGLKEARKLFGDLPHRDVVTWTAMVTGYAQLGF 379
Query: 301 PEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDF-YKIKP 359
+E I LF + I PD++TF + +C L EG+ +Q++ Y +
Sbjct: 380 HDEAIDLFRRMQQ-----QGIKPDKMTFTSALTSCSSPAFLQEGKSIHQQLVHAGYSLDV 434
Query: 360 NFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQG----AVA 415
+ ++YA ++A + +M E N + W ++++ C G A+
Sbjct: 435 YLQS--ALVSMYAKCGSMDDARLVFNQMSERN------VVAWTAMITGCAQHGRCREALE 486
Query: 416 MVERLAKSFVDMDPQDFS 433
E++ K + D F+
Sbjct: 487 YFEQMKKQGIKPDKVTFT 504
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 95/417 (22%), Positives = 171/417 (41%), Gaps = 73/417 (17%)
Query: 78 MIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGA 137
MI G S F L CA+ +E+G H LK+G+ + N+L++MY G+
Sbjct: 87 MILQGTRVYSDVFRGLLQECARLRSLEQGREVHAAILKSGIQPNRYLENTLLSMYAKCGS 146
Query: 138 MDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKS 197
+ AR +F + R+++SW +++ E F V+ N + Y
Sbjct: 147 LTDARRVFDGIRDRNIVSWTAMI-------------EAF--------VAGNQNLEAY--- 182
Query: 198 GNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILD 257
K + M +G + + T S+L A G+ VH + L+ +
Sbjct: 183 -------KCYETMKLAGCKPDKVTFVSLLNAFTNPELLQVGQKVHMEIAKAGLELEPRVG 235
Query: 258 TALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVA 317
T+L+ +Y+KC + AQ +FD + ++N+V W +I G+ G+ + ++L + VA
Sbjct: 236 TSLVGMYAKCGDISKAQVIFDKLPEKNVVTWTLLIAGYAQQGQVDVALELLEKMQQAEVA 295
Query: 318 GGSISPDEITFIGVICACVRAELLTEGRKYFRQMI------------------------- 352
P++IT+ ++ C L G+K R +I
Sbjct: 296 -----PNKITYTSILQGCTTPLALEHGKKVHRYIIQSGYGREIWVVNALITMYCKCGGLK 350
Query: 353 DFYKIKPNFAH-----YWCMANLYAGAELTEEAEEILRKMPEDN---DNMSFESIMWVSL 404
+ K+ + H + M YA +EA ++ R+M + D M+F S + S
Sbjct: 351 EARKLFGDLPHRDVVTWTAMVTGYAQLGFHDEAIDLFRRMQQQGIKPDKMTFTSAL-TSC 409
Query: 405 LSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKR 461
S Q ++ ++L + +D S L+++YA G +D V M +R
Sbjct: 410 SSPAFLQEGKSIHQQLVHAGYSLDVYLQSA---LVSMYAKCGSMDDARLVFNQMSER 463
Score = 91.7 bits (226), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 64/240 (26%), Positives = 113/240 (47%), Gaps = 18/240 (7%)
Query: 191 ISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSL 250
+S K G +L + M+ G R +L C R +GR VH +++ +
Sbjct: 68 VSILCKQGRLKEALGILNTMILQGTRVYSDVFRGLLQECARLRSLEQGREVHAAILKSGI 127
Query: 251 KPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTA 310
+PN L+ L+ +Y+KC + A+RVFD + DRN+V W AMI + E K +
Sbjct: 128 QPNRYLENTLLSMYAKCGSLTDARRVFDGIRDRNIVSWTAMIEAFVAGNQNLEAYKCYET 187
Query: 311 LVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDF-YKIKPNFAHYWCMAN 369
+ +AG PD++TF+ ++ A ELL G+K ++ +++P +
Sbjct: 188 M---KLAG--CKPDKVTFVSLLNAFTNPELLQVGQKVHMEIAKAGLELEPRVG--TSLVG 240
Query: 370 LYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQG----AVAMVERLAKSFV 425
+YA +A+ I K+PE N + W L++ QG A+ ++E++ ++ V
Sbjct: 241 MYAKCGDISKAQVIFDKLPEKN------VVTWTLLIAGYAQQGQVDVALELLEKMQQAEV 294
Score = 89.7 bits (221), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 67/302 (22%), Positives = 124/302 (41%), Gaps = 36/302 (11%)
Query: 6 QIQAHLITSGLFFNNSFWTIN-LLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSN 64
++ ++I SG + W +N L+ G +F + + A++ Y+
Sbjct: 319 KVHRYIIQSG--YGREIWVVNALITMYCKCGGLKEARKLFGDLPHRDVVTWTAMVTGYAQ 376
Query: 65 SCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPV 124
D+ + + +M + G P+ TF S SC+ ++ G H + G ++ +
Sbjct: 377 LGFHDEAIDLFRRMQQQGIKPDKMTFTSALTSCSSPAFLQEGKSIHQQLVHAGYSLDVYL 436
Query: 125 MNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNV 184
++L++MY G+MD AR +F QMS R++++W ++++G + G A
Sbjct: 437 QSALVSMYAKCGSMDDARLVFNQMSERNVVAWTAMITGCAQHGRCREA------------ 484
Query: 185 VSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRS-VHG 243
L+ F +M K G + + T SVL+AC EGR
Sbjct: 485 -------------------LEYFEQMKKQGIKPDKVTFTSVLSACTHVGLVEEGRKHFRS 525
Query: 244 YTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMA-DRNLVCWNAMILGHCIHGKPE 302
+ +KP + + +DL + +E A+ V +M W A++ IH E
Sbjct: 526 MYLDYGIKPMVEHYSCFVDLLGRAGHLEEAENVILTMPFQPGPSVWGALLSACRIHSDVE 585
Query: 303 EG 304
G
Sbjct: 586 RG 587
>gi|449465002|ref|XP_004150218.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
chloroplastic-like [Cucumis sativus]
gi|449500809|ref|XP_004161200.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
chloroplastic-like [Cucumis sativus]
Length = 926
Score = 234 bits (596), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 134/469 (28%), Positives = 235/469 (50%), Gaps = 47/469 (10%)
Query: 7 IQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSNSC 66
I+A + + FNN+ LL + G + + VF+ ++ ++I Y
Sbjct: 379 IKAATLDREVRFNNT-----LLDMYSKCGDLNSAIRVFERMDEKTVVSWTSMITGYVREG 433
Query: 67 VPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMN 126
+ D + + +M G +P+ Y S+ +CA G ++ G + H +N ++ V N
Sbjct: 434 LSDGAIKLFDEMKSRGVVPDVYAVTSILNACAINGNLKSGKIVHDYIRENNLETNSFVSN 493
Query: 127 SLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVS 186
+L +MY + G M AH++F M +++V+S
Sbjct: 494 ALTDMYA-------------------------------KCGSMKDAHDVFSHMKKKDVIS 522
Query: 187 WNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTV 246
WN MI GY+K+ P +L LF EM + + + T+A +L AC A ++GR +HGY +
Sbjct: 523 WNTMIGGYTKNSLPNEALTLFAEMQRES-KPDGTTVACILPACASLAALDKGREIHGYAL 581
Query: 247 RTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIK 306
R + + A++D+Y KC + +A+ +FD + +++LV W MI G+ +HG E I
Sbjct: 582 RNGYSEDKYVTNAVVDMYVKCGLLVLARSLFDMIPNKDLVSWTVMIAGYGMHGYGSEAIN 641
Query: 307 LFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWC 366
F + + G I PDE++FI ++ AC + LL EG K F M +I+PN HY C
Sbjct: 642 TFNQM---RMTG--IEPDEVSFISILYACSHSGLLDEGWKIFNIMKKECQIEPNLEHYAC 696
Query: 367 MANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVD 426
M +L A +A + ++ MP D + +W +LL CR V + E++A+ +
Sbjct: 697 MVDLLARTGNLVKAHKFIKAMPIKPD-----ATIWGALLCGCRIHHDVKLAEKVAERIFE 751
Query: 427 MDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLK 475
++P++ Y L N+YA A +WE+V ++R+ + +R + + PGC +++K
Sbjct: 752 LEPENTGYYVLLANIYAEAEKWEEVQKLRKKIGQRGLKKNPGCSWIEIK 800
Score = 135 bits (339), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 99/351 (28%), Positives = 158/351 (45%), Gaps = 38/351 (10%)
Query: 42 LVFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTG 101
+VF ++ F N +I YS S + + + QM++ G PNSYTF S+ A
Sbjct: 206 MVFDKLSESKIFLWNLMISEYSGSGNYGESINLFKQMLELGIKPNSYTFSSILKCFAAVA 265
Query: 102 CVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVS 161
VE G HGL K G + V+NSLI+ Y FV R
Sbjct: 266 RVEEGRQVHGLICKLGFNSYNTVVNSLISFY------------FVGRKVR---------- 303
Query: 162 GHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKT 221
A +LFD + +R+V+SWN MISGY K+G +++F +M+ G + T
Sbjct: 304 ---------CAQKLFDELTDRDVISWNSMISGYVKNGLDDRGIEIFIKMLVFGVDIDLAT 354
Query: 222 MASVLTACGRSARFNEGRSVHGYTVR-TSLKPNIILDTALIDLYSKCQKVEVAQRVFDSM 280
M +V AC G+ +H Y+++ +L + + L+D+YSKC + A RVF+ M
Sbjct: 355 MVNVFVACANIGTLLLGKVLHSYSIKAATLDREVRFNNTLLDMYSKCGDLNSAIRVFERM 414
Query: 281 ADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAEL 340
++ +V W +MI G+ G + IKLF + + V PD ++ AC
Sbjct: 415 DEKTVVSWTSMITGYVREGLSDGAIKLFDEMKSRGVV-----PDVYAVTSILNACAINGN 469
Query: 341 LTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDN 391
L G K I ++ N + ++YA ++A ++ M + +
Sbjct: 470 LKSG-KIVHDYIRENNLETNSFVSNALTDMYAKCGSMKDAHDVFSHMKKKD 519
Score = 132 bits (331), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 80/292 (27%), Positives = 139/292 (47%), Gaps = 38/292 (13%)
Query: 56 NAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALK 115
N++I Y + + D+G+ +++M+ G + T V++F +CA G + G + H ++K
Sbjct: 321 NSMISGYVKNGLDDRGIEIFIKMLVFGVDIDLATMVNVFVACANIGTLLLGKVLHSYSIK 380
Query: 116 NG-VDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHE 174
+D E+ N+L++MY + GD+++A
Sbjct: 381 AATLDREVRFNNTLLDMYS-------------------------------KCGDLNSAIR 409
Query: 175 LFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSAR 234
+F+ M E+ VVSW MI+GY + G ++KLF EM G + + S+L AC +
Sbjct: 410 VFERMDEKTVVSWTSMITGYVREGLSDGAIKLFDEMKSRGVVPDVYAVTSILNACAINGN 469
Query: 235 FNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILG 294
G+ VH Y +L+ N + AL D+Y+KC ++ A VF M ++++ WN MI G
Sbjct: 470 LKSGKIVHDYIRENNLETNSFVSNALTDMYAKCGSMKDAHDVFSHMKKKDVISWNTMIGG 529
Query: 295 HCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRK 346
+ + P E + LF + + PD T ++ AC L +GR+
Sbjct: 530 YTKNSLPNEALTLFAEMQRES------KPDGTTVACILPACASLAALDKGRE 575
Score = 116 bits (291), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 64/183 (34%), Positives = 99/183 (54%), Gaps = 5/183 (2%)
Query: 163 HVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTM 222
+V+ GD+ +FD + E + WN+MIS YS SGN G S+ LF++M++ G + N T
Sbjct: 195 YVKCGDLKEGRMVFDKLSESKIFLWNLMISEYSGSGNYGESINLFKQMLELGIKPNSYTF 254
Query: 223 ASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMAD 282
+S+L AR EGR VHG + + +LI Y +KV AQ++FD + D
Sbjct: 255 SSILKCFAAVARVEEGRQVHGLICKLGFNSYNTVVNSLISFYFVGRKVRCAQKLFDELTD 314
Query: 283 RNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLT 342
R+++ WN+MI G+ +G + GI++F ++ V G I D T + V AC L
Sbjct: 315 RDVISWNSMISGYVKNGLDDRGIEIFIKML---VFGVDI--DLATMVNVFVACANIGTLL 369
Query: 343 EGR 345
G+
Sbjct: 370 LGK 372
Score = 49.7 bits (117), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 31/123 (25%), Positives = 53/123 (43%), Gaps = 5/123 (4%)
Query: 224 SVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADR 283
S+L C +GR V + + + IL L+ +Y KC ++ + VFD +++
Sbjct: 155 SILQLCAERKSIRDGRRVRSIIESSGVMIDGILGVKLVFMYVKCGDLKEGRMVFDKLSES 214
Query: 284 NLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTE 343
+ WN MI + G E I LF ++ I P+ TF ++ + E
Sbjct: 215 KIFLWNLMISEYSGSGNYGESINLFKQMLE-----LGIKPNSYTFSSILKCFAAVARVEE 269
Query: 344 GRK 346
GR+
Sbjct: 270 GRQ 272
>gi|413946997|gb|AFW79646.1| hypothetical protein ZEAMMB73_771020 [Zea mays]
Length = 505
Score = 234 bits (596), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 116/358 (32%), Positives = 204/358 (56%), Gaps = 10/358 (2%)
Query: 124 VMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERN 183
V +SL+ +Y G + AR++F +M+ RD+++WN +++G+V++GD + A ELFD MPERN
Sbjct: 115 VSSSLVQLYCTCGHVADARSVFDEMAVRDVVAWNVMIAGYVKAGDQAHARELFDAMPERN 174
Query: 184 VVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHG 243
VVSW +I GY++ P ++++FR M G + + SVL ACG + G VH
Sbjct: 175 VVSWTTVIGGYAQMKRPEKAVEVFRRMQVEGIEADGVALLSVLAACGDLGAVDLGEWVHR 234
Query: 244 YTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEE 303
+ VR L I L ++ID+Y KC +E A VF+ M ++++V W +I G +HG +
Sbjct: 235 FVVRRGLCQEIPLMNSIIDMYMKCGCIEKAVEVFEGMEEKSVVTWTTLIAGFALHGLGLQ 294
Query: 304 GIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAH 363
+++F + +A P+ +TF+ ++ AC L GR YF M+ Y+IKP H
Sbjct: 295 AVEMFCRMERENMA-----PNAVTFLAILSACSHVGLTDLGRWYFNIMVSQYRIKPRVEH 349
Query: 364 YWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKS 423
Y CM +L A +EA+++++ MP + + +W +LL+ R G + E+
Sbjct: 350 YGCMVDLLGRAGCLKEAQDLVKNMP-----LKANAAIWGALLAAARTHGDAGLGEQALLH 404
Query: 424 FVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLKEVVEKL 481
++++P + Y L N++A +W DV+++R+ M++R + +PG +++ +V +
Sbjct: 405 LIELEPNNSGNYILLSNIFAEQERWGDVSKLRKAMRERGLRNVPGASSIEVDGMVHEF 462
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 54/260 (20%), Positives = 107/260 (41%), Gaps = 33/260 (12%)
Query: 56 NAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALK 115
VI Y+ P++ V + +M G + +S+ +C G V+ G H ++
Sbjct: 179 TTVIGGYAQMKRPEKAVEVFRRMQVEGIEADGVALLSVLAACGDLGAVDLGEWVHRFVVR 238
Query: 116 NGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHEL 175
G+ E+P+MNS+I+MY G ++ A +F M + +++W +
Sbjct: 239 RGLCQEIPLMNSIIDMYMKCGCIEKAVEVFEGMEEKSVVTWTT----------------- 281
Query: 176 FDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARF 235
+I+G++ G ++++F M + N T ++L+AC
Sbjct: 282 --------------LIAGFALHGLGLQAVEMFCRMERENMAPNAVTFLAILSACSHVGLT 327
Query: 236 NEGRSVHGYTV-RTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADR-NLVCWNAMIL 293
+ GR V + +KP + ++DL + ++ AQ + +M + N W A++
Sbjct: 328 DLGRWYFNIMVSQYRIKPRVEHYGCMVDLLGRAGCLKEAQDLVKNMPLKANAAIWGALLA 387
Query: 294 GHCIHGKPEEGIKLFTALVN 313
HG G + L+
Sbjct: 388 AARTHGDAGLGEQALLHLIE 407
>gi|356503240|ref|XP_003520419.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g11290-like [Glycine max]
Length = 801
Score = 234 bits (596), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 127/446 (28%), Positives = 219/446 (49%), Gaps = 41/446 (9%)
Query: 39 YTVLVFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCA 98
Y VF ++ A+I AY + ++GV +++M+ G PN T +SL C
Sbjct: 280 YARRVFDGLSKASIISWTAMIAAYIHCNNLNEGVRLFVKMLGEGMFPNEITMLSLVKECG 339
Query: 99 KTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNS 158
G +E G + H L+NG L + + I+MYG G + AR++F +DL+ W++
Sbjct: 340 TAGALELGKLLHAFTLRNGFTLSLVLATAFIDMYGKCGDVRSARSVFDSFKSKDLMMWSA 399
Query: 159 IVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGN 218
++S + ++ + E FDI F M G R N
Sbjct: 400 MISSYAQN---NCIDEAFDI----------------------------FVHMTGCGIRPN 428
Query: 219 DKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFD 278
++TM S+L C ++ G+ +H Y + +K ++IL T+ +D+Y+ C ++ A R+F
Sbjct: 429 ERTMVSLLMICAKAGSLEMGKWIHSYIDKQGIKGDMILKTSFVDMYANCGDIDTAHRLFA 488
Query: 279 SMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRA 338
DR++ WNAMI G +HG E ++LF + ++P++ITFIG + AC +
Sbjct: 489 EATDRDISMWNAMISGFAMHGHGEAALELFEEM-----EALGVTPNDITFIGALHACSHS 543
Query: 339 ELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFES 398
LL EG++ F +M+ + P HY CM +L A L +EA E+++ MP M
Sbjct: 544 GLLQEGKRLFHKMVHEFGFTPKVEHYGCMVDLLGRAGLLDEAHELIKSMP-----MRPNI 598
Query: 399 IMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELM 458
++ S L+ C+ + + E AK F+ ++P + N+YA A +W DVA +R M
Sbjct: 599 AVFGSFLAACKLHKNIKLGEWAAKQFLSLEPHKSGYNVLMSNIYASANRWGDVAYIRRAM 658
Query: 459 KKRRMGRMPGCRLVDLKEVVEKLKVG 484
K + + PG +++ ++ + +G
Sbjct: 659 KDEGIVKEPGVSSIEVNGLLHEFIMG 684
Score = 120 bits (301), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 90/391 (23%), Positives = 171/391 (43%), Gaps = 40/391 (10%)
Query: 6 QIQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSNS 65
++ ++ +G F + F L+ ++ GS L+F I N + +I++Y S
Sbjct: 145 EVHGFVVKNG-FHGDVFVCNALIMMYSEVGSLALARLLFDKIENKDVVSWSTMIRSYDRS 203
Query: 66 CVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGV--DFELP 123
+ D+ + M P+ +S+ A+ ++ G H ++NG +P
Sbjct: 204 GLLDEALDLLRDMHVMRVKPSEIGMISITHVLAELADLKLGKAMHAYVMRNGKCGKSGVP 263
Query: 124 VMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERN 183
+ +LI+MY V+ +++ A +FD + + +
Sbjct: 264 LCTALIDMY-------------------------------VKCENLAYARRVFDGLSKAS 292
Query: 184 VVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHG 243
++SW MI+ Y N ++LF +M+ G N+ TM S++ CG + G+ +H
Sbjct: 293 IISWTAMIAAYIHCNNLNEGVRLFVKMLGEGMFPNEITMLSLVKECGTAGALELGKLLHA 352
Query: 244 YTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEE 303
+T+R +++L TA ID+Y KC V A+ VFDS ++L+ W+AMI + + +E
Sbjct: 353 FTLRNGFTLSLVLATAFIDMYGKCGDVRSARSVFDSFKSKDLMMWSAMISSYAQNNCIDE 412
Query: 304 GIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAH 363
+F + G I P+E T + ++ C +A L G K+ ID IK +
Sbjct: 413 AFDIFVHMT-----GCGIRPNERTMVSLLMICAKAGSLEMG-KWIHSYIDKQGIKGDMIL 466
Query: 364 YWCMANLYAGAELTEEAEEILRKMPEDNDNM 394
++YA + A + + + + +M
Sbjct: 467 KTSFVDMYANCGDIDTAHRLFAEATDRDISM 497
Score = 106 bits (265), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 76/296 (25%), Positives = 133/296 (44%), Gaps = 42/296 (14%)
Query: 52 TFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHG 111
+F + + IK N+C P Y M +++ S+ +C G HG
Sbjct: 93 SFLITSYIK---NNC-PADAAKIYAYMRGTDTEVDNFVIPSVLKACCLIPSFLLGQEVHG 148
Query: 112 LALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSA 171
+KNG ++ V N+LI MY G++ AR +F ++ +D++SW++++ + RSG +
Sbjct: 149 FVVKNGFHGDVFVCNALIMMYSEVGSLALARLLFDKIENKDVVSWSTMIRSYDRSGLLDE 208
Query: 172 AHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGR 231
A L L R+M + ++ M S+
Sbjct: 209 A-------------------------------LDLLRDMHVMRVKPSEIGMISITHVLAE 237
Query: 232 SARFNEGRSVHGYTVRTSL--KPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWN 289
A G+++H Y +R K + L TALID+Y KC+ + A+RVFD ++ +++ W
Sbjct: 238 LADLKLGKAMHAYVMRNGKCGKSGVPLCTALIDMYVKCENLAYARRVFDGLSKASIISWT 297
Query: 290 AMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGR 345
AMI + EG++LF ++ G + P+EIT + ++ C A L G+
Sbjct: 298 AMIAAYIHCNNLNEGVRLFVKML-----GEGMFPNEITMLSLVKECGTAGALELGK 348
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/126 (26%), Positives = 65/126 (51%)
Query: 183 NVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVH 242
N + +I+ Y K+ P + K++ M + ++ + SVL AC F G+ VH
Sbjct: 88 NAAIHSFLITSYIKNNCPADAAKIYAYMRGTDTEVDNFVIPSVLKACCLIPSFLLGQEVH 147
Query: 243 GYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPE 302
G+ V+ ++ + ALI +YS+ + +A+ +FD + ++++V W+ MI + G +
Sbjct: 148 GFVVKNGFHGDVFVCNALIMMYSEVGSLALARLLFDKIENKDVVSWSTMIRSYDRSGLLD 207
Query: 303 EGIKLF 308
E + L
Sbjct: 208 EALDLL 213
>gi|224141025|ref|XP_002323875.1| predicted protein [Populus trichocarpa]
gi|222866877|gb|EEF04008.1| predicted protein [Populus trichocarpa]
Length = 442
Score = 234 bits (596), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 144/437 (32%), Positives = 229/437 (52%), Gaps = 21/437 (4%)
Query: 1 MKQLLQIQAHLITSGLFFNNSFWTINLLKHSADFGSPD--YTVLVFKCINNPGTFCVNAV 58
M +L QI AH + +GL ++S +L+ +A S D Y +F + +P TF N +
Sbjct: 8 MSRLKQIHAHSLLAGLH-DHSIILAKMLRFAAVSPSGDLAYAQRLFDQLPHPNTFFYNTL 66
Query: 59 IKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKT--------GCVERGGMCH 110
I+ Y+ S +P + QM +NG P+ +TF L + ++ V H
Sbjct: 67 IRGYAKSSIPSYSLHLVNQMRQNGVDPDEFTFNFLIKARSRVRVNINRNLPLVVECDEIH 126
Query: 111 GLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMS 170
G LK G L V N+LI++Y G A +F + D++SW+ +V HVR+G++
Sbjct: 127 GAVLKLGFSSHLFVRNALIHLYAARGNPVVAWRVFDETVGVDVVSWSGLVLAHVRAGELE 186
Query: 171 AAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACG 230
A +FD MPER+VVSW M+S YS++ +L+L+ M+ G R ++ T+ SV++AC
Sbjct: 187 RARWVFDQMPERDVVSWTTMVSAYSQAKYSREALELYVTMLDKGVRPDEVTLVSVISACT 246
Query: 231 RSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNA 290
G SVH Y + + L ALID+Y+KC ++ A +VF+SM+ ++LV WN+
Sbjct: 247 NLGDLQMGYSVHSYIDENGFRWMVSLCNALIDMYAKCGCMDRAWQVFNSMSRKSLVTWNS 306
Query: 291 MILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQ 350
MI + PE+ LF+ + N VA PD +TF+ V+ A L+ EG + F
Sbjct: 307 MISACANNRNPEDAFGLFSRMFNYGVA-----PDGVTFLAVLTAYAHVGLVDEGYRLFES 361
Query: 351 MIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRF 410
M + I+ HY C+ N+ A EEA E++ MP +++ ++W LL+ CR
Sbjct: 362 MQRDHGIEARIEHYGCVVNMLGQAGWLEEAFELITSMPLPSND-----VVWGVLLAACRK 416
Query: 411 QGAVAMVERLAKSFVDM 427
G V M ER+ K +++
Sbjct: 417 HGDVYMGERVVKKLLEL 433
>gi|449465220|ref|XP_004150326.1| PREDICTED: pentatricopeptide repeat-containing protein At5g19020,
mitochondrial-like [Cucumis sativus]
Length = 874
Score = 234 bits (596), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 145/453 (32%), Positives = 224/453 (49%), Gaps = 15/453 (3%)
Query: 19 NNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQM 78
N W + +LK G D +F+ I F +I + + ++ Y M
Sbjct: 429 NTVSWNV-MLKGYVKSGLVDQARELFERIPERDVFSWAIMIDGFVQMKRLRKALLLYSAM 487
Query: 79 IKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNG-VDFELPVMNSLINMYGCFGA 137
K+ PN V L +C ++ +E G H L +KNG V F+ + ++I+ Y
Sbjct: 488 RKSDLHPNEVLIVDLLSACGQSVSIEEGRQFHSLIVKNGFVCFDF-IQATIISFYAACRR 546
Query: 138 MDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKS 197
+D A + L S N ++ G ++G + A ++FD+MPE++V SW+ MISGY+++
Sbjct: 547 IDLAYLQYQMSDKSHLTSSNVMIVGFTKNGMIDQARQIFDMMPEKDVFSWSTMISGYAQN 606
Query: 198 GNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILD 257
P +L LF M+ S N+ TM SV +A + EGR H Y + N L
Sbjct: 607 ELPDVALDLFHGMIDSKVEPNEITMVSVFSAIAALGKLPEGRWAHEYVCNKVIPLNDNLS 666
Query: 258 TALIDLYSKCQKVEVAQRVFDSMADRNLVC--WNAMILGHCIHGKPEEGIKLFTALVNGT 315
A+ID+Y+KC ++ A VF + D+ WNA+I G +HG +++F+ L
Sbjct: 667 AAIIDMYAKCGSIDTALDVFRQIKDKTSTVSPWNAIICGLAMHGHANLSLEIFSNLQRR- 725
Query: 316 VAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAE 375
SI + ITF+GV+ AC A L+ G +YF M + ++PN HY C+ +L
Sbjct: 726 ----SIKLNSITFLGVLSACCHAGLVEVGERYFWSMKTQHGVEPNIKHYGCLVDLLGRVG 781
Query: 376 LTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRY 435
EAEEI+R MP M + ++W +LL+ R G V + ER A++ + P
Sbjct: 782 RLREAEEIVRTMP-----MKADVVIWGTLLASSRTHGEVEIGERAAENLARLQPSHGPGR 836
Query: 436 QFLLNVYAVAGQWEDVARVRELMKKRRMGRMPG 468
L N+YA AG WED A VR ++ +RM R PG
Sbjct: 837 VLLSNLYADAGLWEDAALVRRAIQSQRMIRSPG 869
Score = 141 bits (356), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 88/357 (24%), Positives = 164/357 (45%), Gaps = 37/357 (10%)
Query: 70 QGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLI 129
+ + + M G PN T S+ +C+ G + M H L +K + + +L+
Sbjct: 347 EAIEVFKDMRSAGVAPNEVTMASVMSACSHIGGIWNCRMLHALVIKLHFFGLVLISTNLL 406
Query: 130 NMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNI 189
+MY F ++ + +F +M R+ +SWN ++ G+V+SG + A ELF+ +PER+V SW I
Sbjct: 407 HMYCVFSSLKDTKRLFNEMPVRNTVSWNVMLKGYVKSGLVDQARELFERIPERDVFSWAI 466
Query: 190 MISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTS 249
MI G+ + +L L+ M KS N+ + +L+ACG+S EGR H V+
Sbjct: 467 MIDGFVQMKRLRKALLLYSAMRKSDLHPNEVLIVDLLSACGQSVSIEEGRQFHSLIVKNG 526
Query: 250 LKPNIILDTALIDLYSKCQKVEV-------------------------------AQRVFD 278
+ +I Y+ C+++++ A+++FD
Sbjct: 527 FVCFDFIQATIISFYAACRRIDLAYLQYQMSDKSHLTSSNVMIVGFTKNGMIDQARQIFD 586
Query: 279 SMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRA 338
M ++++ W+ MI G+ + P+ + LF +++ V P+EIT + V A
Sbjct: 587 MMPEKDVFSWSTMISGYAQNELPDVALDLFHGMIDSKV-----EPNEITMVSVFSAIAAL 641
Query: 339 ELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMS 395
L EGR + + + I N + ++YA + A ++ R++ + +S
Sbjct: 642 GKLPEGR-WAHEYVCNKVIPLNDNLSAAIIDMYAKCGSIDTALDVFRQIKDKTSTVS 697
Score = 126 bits (317), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 78/290 (26%), Positives = 142/290 (48%), Gaps = 26/290 (8%)
Query: 89 TFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQM 148
+ VS CA + + G H + LK G + ++NSLINMY G + AR +F
Sbjct: 234 SVVSALKYCASSSAISSGQQIHAIVLKYGFNSNTFILNSLINMYVKCGLLSSARLLFDSC 293
Query: 149 SPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFR 208
S D +S N ++SG+V+ + A +LF MPER VS+ MI G +++ G ++++F+
Sbjct: 294 SVLDSVSCNIMMSGYVKLRQLENARQLFAKMPERGCVSYTTMILGLAQNDCWGEAIEVFK 353
Query: 209 EMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQ 268
+M +G N+ TMASV++AC R +H ++ +++ T L+ +Y
Sbjct: 354 DMRSAGVAPNEVTMASVMSACSHIGGIWNCRMLHALVIKLHFFGLVLISTNLLHMYCVFS 413
Query: 269 KVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLF-----------TALVNGTVA 317
++ +R+F+ M RN V WN M+ G+ G ++ +LF +++G V
Sbjct: 414 SLKDTKRLFNEMPVRNTVSWNVMLKGYVKSGLVDQARELFERIPERDVFSWAIMIDGFVQ 473
Query: 318 ---------------GGSISPDEITFIGVICACVRAELLTEGRKYFRQMI 352
+ P+E+ + ++ AC ++ + EGR++ ++
Sbjct: 474 MKRLRKALLLYSAMRKSDLHPNEVLIVDLLSACGQSVSIEEGRQFHSLIV 523
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 59/298 (19%), Positives = 114/298 (38%), Gaps = 74/298 (24%)
Query: 221 TMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKC------------- 267
++ S L C S+ + G+ +H ++ N + +LI++Y KC
Sbjct: 234 SVVSALKYCASSSAISSGQQIHAIVLKYGFNSNTFILNSLINMYVKCGLLSSARLLFDSC 293
Query: 268 ------------------QKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFT 309
+++E A+++F M +R V + MILG + E I++F
Sbjct: 294 SVLDSVSCNIMMSGYVKLRQLENARQLFAKMPERGCVSYTTMILGLAQNDCWGEAIEVFK 353
Query: 310 ALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFY-----KIKPNFAHY 364
+ + VA P+E+T V+ AC + R +I + I N H
Sbjct: 354 DMRSAGVA-----PNEVTMASVMSACSHIGGIWNCRMLHALVIKLHFFGLVLISTNLLHM 408
Query: 365 WC-------------------------MANLYAGAELTEEAEEILRKMPEDNDNMSFESI 399
+C M Y + L ++A E+ ++PE D S+ +I
Sbjct: 409 YCVFSSLKDTKRLFNEMPVRNTVSWNVMLKGYVKSGLVDQARELFERIPE-RDVFSW-AI 466
Query: 400 MWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVREL 457
M + + R + A+ + + KS D+ P + ++++ + GQ + R+
Sbjct: 467 MIDGFVQMKRLRKALLLYSAMRKS--DLHPNEV----LIVDLLSACGQSVSIEEGRQF 518
>gi|297824523|ref|XP_002880144.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297325983|gb|EFH56403.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 555
Score = 234 bits (596), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 143/498 (28%), Positives = 239/498 (47%), Gaps = 77/498 (15%)
Query: 52 TFCVNAVIKAYSNSCVPDQGVVFYLQMIKNG-FMPNSYTFVSLFGSCAKTGCVERG---- 106
+F N++IKAY + + FY + K P+++TF ++ SC + CV +G
Sbjct: 42 SFLCNSMIKAYLETRHYNDSFAFYRDLRKETCLAPDNFTFTTMTKSCTLSMCVYQGLQLH 101
Query: 107 ------GMCHGLALKNG-VDF---------------ELP--------------------- 123
G C + + G VD E+P
Sbjct: 102 SQIWRSGFCADMYVSTGVVDMYAKFGKMGCARNVFDEMPQRSEVSWTALICGYVRFGELD 161
Query: 124 ----------------VMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSG 167
+ N++++ + G M AR +F +M+ + +I+W +++ G+ S
Sbjct: 162 LASKLFDQMPQVKDVVIYNAMMDGFVKSGDMTSARRLFDEMTHKTVITWTTMIHGYCNSN 221
Query: 168 DMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMM-KSGFRGNDKTMASVL 226
D+ +A +LFD MPERN+VSWN MI GY ++ P +++LF+EM + +D T+ SVL
Sbjct: 222 DIDSARKLFDAMPERNLVSWNTMIGGYCQNKQPQEAIRLFQEMQATTSLDPDDVTILSVL 281
Query: 227 TACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLV 286
A + + G H + R +L + + TA++D+YSKC ++E A+R+FD M ++ +
Sbjct: 282 PAISDTGALSLGEWCHCFVQRKNLDKKVKVCTAILDMYSKCGEIEKAKRIFDEMPEKQVA 341
Query: 287 CWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRK 346
WNAMI G+ ++G + LF + PDEIT + VI AC L+ EGRK
Sbjct: 342 SWNAMIHGYALNGNAHAALDLFLTMAKEE------KPDEITMLAVISACNHGGLVEEGRK 395
Query: 347 YFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLS 406
+F QM+ + + HY CM +L A ++AE ++ MP I+ S LS
Sbjct: 396 WF-QMMRKFGLNAKIEHYGCMVDLLGRAGNLKQAEHLITNMP-----FKPNGIILSSFLS 449
Query: 407 LCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRM 466
C + ER+ K V+++PQ+ Y L N+YA +W+D V+ +M+K +
Sbjct: 450 ACGQYKDIERAERILKKAVELEPQNDGNYVLLRNLYAADKRWDDFGMVKNMMRKNEAKKE 509
Query: 467 PGCRLVDLKEVVEKLKVG 484
GC L+++ +V + G
Sbjct: 510 VGCSLIEINYIVSEFISG 527
>gi|357519003|ref|XP_003629790.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355523812|gb|AET04266.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 908
Score = 234 bits (596), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 133/418 (31%), Positives = 220/418 (52%), Gaps = 42/418 (10%)
Query: 57 AVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKN 116
++I AY + + + +M G P+ YT S+ +CA + +++G H +KN
Sbjct: 367 SIIAAYVREGLYSDAIGLFDEMQSKGVRPDIYTVTSIVHACACSSSLDKGRDVHSYVIKN 426
Query: 117 GVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELF 176
G+ LPV N+LINMY G+++ AR +F +
Sbjct: 427 GMGSNLPVTNALINMYAKCGSVEEARLVFSK----------------------------- 457
Query: 177 DIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFN 236
+P +++VSWN MI GYS++ P +L+LF +M K F+ +D TMA VL AC A +
Sbjct: 458 --IPVKDIVSWNTMIGGYSQNLLPNEALELFLDMQKQ-FKPDDITMACVLPACAGLAALD 514
Query: 237 EGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHC 296
+GR +HG+ +R ++ + AL+D+Y+KC + +AQ +FD + ++L+ W MI G+
Sbjct: 515 KGREIHGHILRRGYFSDLHVACALVDMYAKCGLLVLAQLLFDMIPKKDLISWTVMIAGYG 574
Query: 297 IHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYK 356
+HG E I F + +AG I PDE +F ++ AC + LL EG K+F M +
Sbjct: 575 MHGFGNEAISTFNEM---RIAG--IEPDESSFSAILNACSHSGLLNEGWKFFNSMRNECG 629
Query: 357 IKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAM 416
++P HY C+ +L A +A + + MP D + +W LLS CR V +
Sbjct: 630 VEPKLEHYACVVDLLARMGNLSKAYKFIESMPIKPD-----TTIWGVLLSGCRIHHDVKL 684
Query: 417 VERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDL 474
E++A+ +++P + Y L NVYA A +WE+V ++R+ M+KR + PGC +++
Sbjct: 685 AEKVAEHIFELEPDNTRYYVVLANVYAEAEKWEEVKKLRKRMQKRGFKQNPGCSWIEV 742
Score = 135 bits (341), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 95/346 (27%), Positives = 153/346 (44%), Gaps = 37/346 (10%)
Query: 43 VFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGC 102
+F I N F N ++ Y+ + V + +M K G + N YTF + A G
Sbjct: 151 IFDKIMNDKVFLWNLLMSEYAKIGNFRESVSLFKKMQKLGVVGNCYTFTCVLKCFAALGK 210
Query: 103 VERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSG 162
V+ HG LK G V+NSLI Y FG ++ A N+F ++S D++SWNS+++G
Sbjct: 211 VKECKRVHGYVLKLGFGSNTAVVNSLIAAYFKFGGVESAHNLFDELSEPDVVSWNSMING 270
Query: 163 HVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTM 222
V ++G+S +G L++F +M+ G + T+
Sbjct: 271 CV--------------------------VNGFSGNG-----LEIFIQMLILGVEVDLTTL 299
Query: 223 ASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMAD 282
SVL AC + GR++HG+ V+ ++ L+D+YSKC + A VF M D
Sbjct: 300 VSVLVACANIGNLSLGRALHGFGVKACFSEEVVFSNTLLDMYSKCGNLNGATEVFVKMGD 359
Query: 283 RNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLT 342
+V W ++I + G + I LF + + PD T ++ AC + L
Sbjct: 360 TTIVSWTSIIAAYVREGLYSDAIGLFDEM-----QSKGVRPDIYTVTSIVHACACSSSLD 414
Query: 343 EGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMP 388
+GR +I + N + N+YA EEA + K+P
Sbjct: 415 KGRDVHSYVIK-NGMGSNLPVTNALINMYAKCGSVEEARLVFSKIP 459
Score = 132 bits (333), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 100/398 (25%), Positives = 184/398 (46%), Gaps = 53/398 (13%)
Query: 1 MKQLLQIQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIK 60
+K+ ++ +++ G F +N+ +L+ FG + +F ++ P N++I
Sbjct: 211 VKECKRVHGYVLKLG-FGSNTAVVNSLIAAYFKFGGVESAHNLFDELSEPDVVSWNSMI- 268
Query: 61 AYSNSCVPD----QGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKN 116
N CV + G+ ++QM+ G + T VS+ +CA G + G HG +K
Sbjct: 269 ---NGCVVNGFSGNGLEIFIQMLILGVEVDLTTLVSVLVACANIGNLSLGRALHGFGVKA 325
Query: 117 GVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELF 176
E+ N+L++MY + G+++ A E+F
Sbjct: 326 CFSEEVVFSNTLLDMYS-------------------------------KCGNLNGATEVF 354
Query: 177 DIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFN 236
M + +VSW +I+ Y + G ++ LF EM G R + T+ S++ AC S+ +
Sbjct: 355 VKMGDTTIVSWTSIIAAYVREGLYSDAIGLFDEMQSKGVRPDIYTVTSIVHACACSSSLD 414
Query: 237 EGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHC 296
+GR VH Y ++ + N+ + ALI++Y+KC VE A+ VF + +++V WN MI G+
Sbjct: 415 KGRDVHSYVIKNGMGSNLPVTNALINMYAKCGSVEEARLVFSKIPVKDIVSWNTMIGGYS 474
Query: 297 IHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYK 356
+ P E ++LF + PD+IT V+ AC L +GR+ ++
Sbjct: 475 QNLLPNEALELFLDMQK------QFKPDDITMACVLPACAGLAALDKGREIHGHILR--- 525
Query: 357 IKPNFA--HYWC-MANLYAGAELTEEAEEILRKMPEDN 391
+ F+ H C + ++YA L A+ + +P+ +
Sbjct: 526 -RGYFSDLHVACALVDMYAKCGLLVLAQLLFDMIPKKD 562
Score = 99.0 bits (245), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 68/257 (26%), Positives = 115/257 (44%), Gaps = 36/257 (14%)
Query: 89 TFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQM 148
++ S+ CA+ +E G H + + NG+ + + L+ MY
Sbjct: 96 SYCSVLQLCAEKKSLEDGKRVHSVIISNGISVDEALGAKLVFMY---------------- 139
Query: 149 SPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFR 208
V GD+ ++FD + V WN+++S Y+K GN S+ LF+
Sbjct: 140 ---------------VNCGDLVQGRKIFDKIMNDKVFLWNLLMSEYAKIGNFRESVSLFK 184
Query: 209 EMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQ 268
+M K G GN T VL + E + VHGY ++ N + +LI Y K
Sbjct: 185 KMQKLGVVGNCYTFTCVLKCFAALGKVKECKRVHGYVLKLGFGSNTAVVNSLIAAYFKFG 244
Query: 269 KVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITF 328
VE A +FD +++ ++V WN+MI G ++G G+++F ++ + G + D T
Sbjct: 245 GVESAHNLFDELSEPDVVSWNSMINGCVVNGFSGNGLEIFIQML---ILG--VEVDLTTL 299
Query: 329 IGVICACVRAELLTEGR 345
+ V+ AC L+ GR
Sbjct: 300 VSVLVACANIGNLSLGR 316
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 86/387 (22%), Positives = 159/387 (41%), Gaps = 79/387 (20%)
Query: 6 QIQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSNS 65
+ +++I +G+ N T L+ A GS + LVF I N +I YS +
Sbjct: 418 DVHSYVIKNGMGSNLPV-TNALINMYAKCGSVEEARLVFSKIPVKDIVSWNTMIGGYSQN 476
Query: 66 CVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVM 125
+P++ + +L M K F P+ T + +CA +++G HG L+ G +L V
Sbjct: 477 LLPNEALELFLDMQKQ-FKPDDITMACVLPACAGLAALDKGREIHGHILRRGYFSDLHVA 535
Query: 126 NSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVV 185
+L++MY G + A+ +F + +DLISW
Sbjct: 536 CALVDMYAKCGLLVLAQLLFDMIPKKDLISWT---------------------------- 567
Query: 186 SWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEG-RSVHGY 244
+MI+GY G ++ F EM +G ++ + +++L AC S NEG + +
Sbjct: 568 ---VMIAGYGMHGFGNEAISTFNEMRIAGIEPDESSFSAILNACSHSGLLNEGWKFFNSM 624
Query: 245 TVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADR-NLVCWNAMILGHCIHGKPEE 303
++P + ++DL ++ + A + +SM + + W ++ G IH
Sbjct: 625 RNECGVEPKLEHYACVVDLLARMGNLSKAYKFIESMPIKPDTTIWGVLLSGCRIH----H 680
Query: 304 GIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKP-NFA 362
+KL AE + E ++++P N
Sbjct: 681 DVKL------------------------------AEKVAE---------HIFELEPDNTR 701
Query: 363 HYWCMANLYAGAELTEEAEEILRKMPE 389
+Y +AN+YA AE EE +++ ++M +
Sbjct: 702 YYVVLANVYAEAEKWEEVKKLRKRMQK 728
>gi|168003497|ref|XP_001754449.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162694551|gb|EDQ80899.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 723
Score = 233 bits (595), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 140/464 (30%), Positives = 219/464 (47%), Gaps = 43/464 (9%)
Query: 6 QIQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSNS 65
++ ++ +GL T +L+ A G ++F + +I Y+
Sbjct: 169 KVHMEIVEAGLELEPRVGT-SLVGMYAKCGDISKARVIFDRLPEKNVVTWTLLIAGYAQQ 227
Query: 66 CVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVM 125
D + M + PN TF S+ C +E G H +++G EL V+
Sbjct: 228 GQVDVALELLETMQQAEVAPNKITFASILQGCTTPAALEHGKKVHRYIIQSGYGRELWVV 287
Query: 126 NSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVV 185
NSLI MY + G + A +LF +P R+VV
Sbjct: 288 NSLITMY-------------------------------CKCGGLEEARKLFSDLPHRDVV 316
Query: 186 SWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYT 245
+W M++GY++ G ++ LFR M + G + + T SVLT+C A EG+ +H
Sbjct: 317 TWTAMVTGYAQLGFHDEAINLFRRMQQQGIKPDKMTFTSVLTSCSSPAFLQEGKRIHQQL 376
Query: 246 VRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCI-HGKPEEG 304
V ++ L +AL+ +Y+KC ++ A VF+ M++RN+V W A+I G C HG+ E
Sbjct: 377 VHAGYNLDVYLQSALVSMYAKCGSMDDASLVFNQMSERNVVAWTAIITGCCAQHGRCREA 436
Query: 305 IKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHY 364
++ F + I PD++TF V+ AC L+ EGRK+FR M Y IKP HY
Sbjct: 437 LEYFDQMKK-----QGIKPDKVTFTSVLSACTHVGLVEEGRKHFRSMYLDYGIKPMVEHY 491
Query: 365 WCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSF 424
C +L A EEAE ++ MP +W +LLS CR V ER A++
Sbjct: 492 SCFVDLLGRAGHLEEAENVILSMP-----FIPGPSVWGALLSACRVHSDVERGERAAENV 546
Query: 425 VDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPG 468
+ +DP D Y L ++YA AG++ED +VR++M+KR + + PG
Sbjct: 547 LKLDPDDDGAYVALSSIYAAAGRYEDAEKVRQVMEKRDVVKEPG 590
Score = 108 bits (271), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 94/417 (22%), Positives = 167/417 (40%), Gaps = 73/417 (17%)
Query: 78 MIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGA 137
MI G S F L CA+ +E+G H LK+G+ + N+L++MY
Sbjct: 38 MILQGTRVYSDVFRGLLQECARLRSLEQGREVHAAILKSGIQPNRYLENTLLSMYA---- 93
Query: 138 MDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKS 197
+ G ++ A +FD + +RN+VSW MI +
Sbjct: 94 ---------------------------KCGSLTDARRVFDSIRDRNIVSWTAMIEAFVAG 126
Query: 198 GNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILD 257
+ K + M +G + + T S+L A G+ VH V L+ +
Sbjct: 127 NKNLEAFKCYETMKLAGCKPDKVTFVSLLNAFTNPELLQLGQKVHMEIVEAGLELEPRVG 186
Query: 258 TALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVA 317
T+L+ +Y+KC + A+ +FD + ++N+V W +I G+ G+ + ++L + VA
Sbjct: 187 TSLVGMYAKCGDISKARVIFDRLPEKNVVTWTLLIAGYAQQGQVDVALELLETMQQAEVA 246
Query: 318 GGSISPDEITFIGVICACVRAELLTEGRKYFRQMI------------------------- 352
P++ITF ++ C L G+K R +I
Sbjct: 247 -----PNKITFASILQGCTTPAALEHGKKVHRYIIQSGYGRELWVVNSLITMYCKCGGLE 301
Query: 353 DFYKIKPNFAH-----YWCMANLYAGAELTEEAEEILRKMPEDN---DNMSFESIMWVSL 404
+ K+ + H + M YA +EA + R+M + D M+F S++ S
Sbjct: 302 EARKLFSDLPHRDVVTWTAMVTGYAQLGFHDEAINLFRRMQQQGIKPDKMTFTSVL-TSC 360
Query: 405 LSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKR 461
S Q + ++L + ++ D L+++YA G +D + V M +R
Sbjct: 361 SSPAFLQEGKRIHQQLVHAGYNL---DVYLQSALVSMYAKCGSMDDASLVFNQMSER 414
Score = 95.9 bits (237), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 64/234 (27%), Positives = 111/234 (47%), Gaps = 14/234 (5%)
Query: 191 ISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSL 250
+S K+G +L + M+ G R +L C R +GR VH +++ +
Sbjct: 19 VSVLCKTGRLKEALGIMNTMILQGTRVYSDVFRGLLQECARLRSLEQGREVHAAILKSGI 78
Query: 251 KPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTA 310
+PN L+ L+ +Y+KC + A+RVFDS+ DRN+V W AMI K E K +
Sbjct: 79 QPNRYLENTLLSMYAKCGSLTDARRVFDSIRDRNIVSWTAMIEAFVAGNKNLEAFKCYET 138
Query: 311 LVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDF-YKIKPNFAHYWCMAN 369
+ +AG PD++TF+ ++ A ELL G+K ++++ +++P +
Sbjct: 139 M---KLAG--CKPDKVTFVSLLNAFTNPELLQLGQKVHMEIVEAGLELEPRVG--TSLVG 191
Query: 370 LYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKS 423
+YA +A I ++PE N + W L++ QG V + L ++
Sbjct: 192 MYAKCGDISKARVIFDRLPEKN------VVTWTLLIAGYAQQGQVDVALELLET 239
>gi|224125684|ref|XP_002319650.1| predicted protein [Populus trichocarpa]
gi|222858026|gb|EEE95573.1| predicted protein [Populus trichocarpa]
Length = 705
Score = 233 bits (595), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 134/459 (29%), Positives = 233/459 (50%), Gaps = 50/459 (10%)
Query: 56 NAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALK 115
A+I Y ++G +++MI+ PN T +SL SC G V+ G H L+
Sbjct: 201 TAMIAGYIRCNDLEEGERLFVRMIEENVFPNDITMLSLIISCGFVGAVQLGKRLHAYILR 260
Query: 116 NGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHEL 175
NG L + +L++MYG + G++ +A +
Sbjct: 261 NGFGMSLALATALVDMYG-------------------------------KCGEIRSARAI 289
Query: 176 FDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARF 235
FD M ++V++W MIS Y+++ + +LF +M +G R N+ TM S+L+ C +
Sbjct: 290 FDSMKNKDVMTWTAMISAYAQANCIDYAFQLFVQMRDNGVRPNELTMVSLLSLCAVNGAL 349
Query: 236 NEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGH 295
+ G+ H Y + ++ ++IL TALID+Y+KC + AQR+F DR++ WN M+ G+
Sbjct: 350 DMGKWFHAYIDKQGVEVDVILKTALIDMYAKCGDISGAQRLFSEAIDRDICTWNVMMAGY 409
Query: 296 CIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFY 355
+HG E+ +KLFT + + P++ITFIG + AC A L+ EG+ F +MI +
Sbjct: 410 GMHGYGEKALKLFTEM-----ETLGVKPNDITFIGALHACSHAGLVVEGKGLFEKMIHDF 464
Query: 356 KIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVA 415
+ P HY CM +L A L +EA +++ MP ++ +W ++L+ C+
Sbjct: 465 GLVPKVEHYGCMVDLLGRAGLLDEAYKMIESMP-----VTPNIAIWGAMLAACKIHKNSN 519
Query: 416 MVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLK 475
M E A+ + ++PQ+ + N+YA A +W DVA +R+ +K + + PG +++
Sbjct: 520 MGELAARELLALEPQNCGYKVLMSNIYAAANRWNDVAGMRKAVKDTGIKKEPGMSSIEVN 579
Query: 476 EVVEKLKVGHFWRGGMKEEVNKMMECRQSRSLATVSKQL 514
+V K+G + + ++E + S LA +SK+L
Sbjct: 580 GLVHDFKMG--------DTAHPLIE-KISEMLAEMSKKL 609
Score = 144 bits (363), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 83/305 (27%), Positives = 156/305 (51%), Gaps = 15/305 (4%)
Query: 68 PDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNS 127
P + Y M K +S+ S+ +C++ G HG ++KNG+ ++ V+N+
Sbjct: 90 PRYALNTYTYMRKLDIEVDSFIIPSVLKACSQISVARMGKEIHGFSVKNGLVSDVFVVNA 149
Query: 128 LINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSW 187
L+ MY G++ AR +F +MS RD++SW++++ ++ LF +R++VSW
Sbjct: 150 LMQMYSECGSLVSARLLFDKMSERDVVSWSTMIRAYI---------TLFYGFSQRSIVSW 200
Query: 188 NIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVR 247
MI+GY + + +LF M++ ND TM S++ +CG G+ +H Y +R
Sbjct: 201 TAMIAGYIRCNDLEEGERLFVRMIEENVFPNDITMLSLIISCGFVGAVQLGKRLHAYILR 260
Query: 248 TSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKL 307
++ L TAL+D+Y KC ++ A+ +FDSM +++++ W AMI + + +L
Sbjct: 261 NGFGMSLALATALVDMYGKCGEIRSARAIFDSMKNKDVMTWTAMISAYAQANCIDYAFQL 320
Query: 308 FTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCM 367
F + + + P+E+T + ++ C L G K+F ID ++ + +
Sbjct: 321 FVQMRD-----NGVRPNELTMVSLLSLCAVNGALDMG-KWFHAYIDKQGVEVDVILKTAL 374
Query: 368 ANLYA 372
++YA
Sbjct: 375 IDMYA 379
Score = 98.2 bits (243), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 69/264 (26%), Positives = 110/264 (41%), Gaps = 33/264 (12%)
Query: 43 VFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGC 102
+F + N A+I AY+ + D ++QM NG PN T VSL CA G
Sbjct: 289 IFDSMKNKDVMTWTAMISAYAQANCIDYAFQLFVQMRDNGVRPNELTMVSLLSLCAVNGA 348
Query: 103 VERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSG 162
++ G H K GV+ ++ + +LI+MY G + A+ +F + RD+ +WN
Sbjct: 349 LDMGKWFHAYIDKQGVEVDVILKTALIDMYAKCGDISGAQRLFSEAIDRDICTWN----- 403
Query: 163 HVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTM 222
+M++GY G +LKLF EM G + ND T
Sbjct: 404 --------------------------VMMAGYGMHGYGEKALKLFTEMETLGVKPNDITF 437
Query: 223 ASVLTACGRSARFNEGRSVHGYTVRT-SLKPNIILDTALIDLYSKCQKVEVAQRVFDSM- 280
L AC + EG+ + + L P + ++DL + ++ A ++ +SM
Sbjct: 438 IGALHACSHAGLVVEGKGLFEKMIHDFGLVPKVEHYGCMVDLLGRAGLLDEAYKMIESMP 497
Query: 281 ADRNLVCWNAMILGHCIHGKPEEG 304
N+ W AM+ IH G
Sbjct: 498 VTPNIAIWGAMLAACKIHKNSNMG 521
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 66/265 (24%), Positives = 117/265 (44%), Gaps = 49/265 (18%)
Query: 199 NPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDT 258
+P +L + M K + + SVL AC + + G+ +HG++V+ L ++ +
Sbjct: 89 HPRYALNTYTYMRKLDIEVDSFIIPSVLKACSQISVARMGKEIHGFSVKNGLVSDVFVVN 148
Query: 259 ALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHC--IHGKPEEGIKLFTALVNGTV 316
AL+ +YS+C + A+ +FD M++R++V W+ MI + +G + I +TA++ G +
Sbjct: 149 ALMQMYSECGSLVSARLLFDKMSERDVVSWSTMIRAYITLFYGFSQRSIVSWTAMIAGYI 208
Query: 317 AGGSIS---------------PDEITFIGVICAC-----------VRAELLTEG----RK 346
+ P++IT + +I +C + A +L G
Sbjct: 209 RCNDLEEGERLFVRMIEENVFPNDITMLSLIISCGFVGAVQLGKRLHAYILRNGFGMSLA 268
Query: 347 YFRQMIDFY----KIKPNFAHYWCMAN-----------LYAGAELTEEAEEILRKMPEDN 391
++D Y +I+ A + M N YA A + A ++ +M DN
Sbjct: 269 LATALVDMYGKCGEIRSARAIFDSMKNKDVMTWTAMISAYAQANCIDYAFQLFVQM-RDN 327
Query: 392 DNMSFESIMWVSLLSLCRFQGAVAM 416
E M VSLLSLC GA+ M
Sbjct: 328 GVRPNELTM-VSLLSLCAVNGALDM 351
>gi|108710611|gb|ABF98406.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
Length = 787
Score = 233 bits (595), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 138/406 (33%), Positives = 213/406 (52%), Gaps = 11/406 (2%)
Query: 70 QGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLI 129
+ V Y QM+ +G PN F S+ G+CA + G H LK + V ++LI
Sbjct: 361 EAVSLYSQMLADGCRPNISCFSSVLGACASLQDLRSGRKIHNQTLKMACSNNVFVSSALI 420
Query: 130 NMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNI 189
+MY + A+ +F + ++++ WNS++SG+ + M A ELF MP RNV SWN
Sbjct: 421 DMYCKCKQLPDAQMIFYSLPQKNIVCWNSLISGYSNNSKMVEAEELFKKMPARNVASWNS 480
Query: 190 MISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTS 249
+ISGY+++ +LK F M+ SG + T +SVL AC G+ VH ++
Sbjct: 481 IISGYAQNRQFIDALKSFHAMLASGQSPGEITFSSVLLACASLCSLEMGKMVHAKIIKLG 540
Query: 250 LKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFT 309
+K +I + TAL D+Y+K ++ ++RVF M RN V W AMI G +G EE I LF
Sbjct: 541 IKESIFVGTALSDMYAKSGDLDSSKRVFYEMPKRNDVAWTAMIQGLAENGFAEESILLFE 600
Query: 310 ALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMAN 369
+++ I+P+E TF+ ++ AC + L+ YF +M+ I P HY CM +
Sbjct: 601 DMIS-----AGITPNEQTFLAILFACSHSGLVEHAMHYF-EMMQACGISPKAKHYTCMVD 654
Query: 370 LYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDP 429
+ A A EAE++L K+ ++ S W +LLS C M ER AK ++D
Sbjct: 655 VLARAGHLAEAEDLLLKIESKSEANS-----WAALLSACNIYRNKEMGERAAKRLQELDK 709
Query: 430 QDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLK 475
+ + Y L N+YA G+W+D A +R LMK + + GC V ++
Sbjct: 710 DNTAGYVLLSNMYASCGKWKDAAEMRILMKGINLKKDGGCSWVQIR 755
Score = 181 bits (458), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 110/377 (29%), Positives = 185/377 (49%), Gaps = 34/377 (9%)
Query: 56 NAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALK 115
A+I + + +P + + +M+ G PN T VS+ +C G + GLA+K
Sbjct: 214 TAMIAGFVLNELPKDALGVFHEMLSCGVSPNEITLVSVIKACIGAGEFDLAMSIVGLAMK 273
Query: 116 -NGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHE 174
N +D L V NSLI +Y G D AR MF +M RD++SW +++ + GD+ A
Sbjct: 274 SNLLDKNLGVRNSLITLYLRKGDADAARRMFDEMEVRDVVSWTALLDVYAELGDLEGARR 333
Query: 175 LFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSAR 234
+ D MPERN VSW +++ + + GN ++ L+ +M+ G R N +SVL AC
Sbjct: 334 VLDEMPERNEVSWGTLVARHEQKGNAKEAVSLYSQMLADGCRPNISCFSSVLGACASLQD 393
Query: 235 FNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILG 294
GR +H T++ + N+ + +ALID+Y KC+++ AQ +F S+ +N+VCWN++I G
Sbjct: 394 LRSGRKIHNQTLKMACSNNVFVSSALIDMYCKCKQLPDAQMIFYSLPQKNIVCWNSLISG 453
Query: 295 HCIHGKPEEGIKLFTALVNGTVA--------------------------GGSISPDEITF 328
+ + K E +LF + VA SP EITF
Sbjct: 454 YSNNSKMVEAEELFKKMPARNVASWNSIISGYAQNRQFIDALKSFHAMLASGQSPGEITF 513
Query: 329 IGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMP 388
V+ AC L G+ ++I IK + ++++YA + + ++ + +MP
Sbjct: 514 SSVLLACASLCSLEMGKMVHAKIIKL-GIKESIFVGTALSDMYAKSGDLDSSKRVFYEMP 572
Query: 389 EDNDNMSFESIMWVSLL 405
+ ND + W +++
Sbjct: 573 KRND------VAWTAMI 583
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 88/377 (23%), Positives = 155/377 (41%), Gaps = 80/377 (21%)
Query: 155 SWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGN-----------PGCS 203
+++ +V HV++GD+ +A LFD MPER+VVS+ M+ K G+ P CS
Sbjct: 150 AYDFMVREHVKAGDIVSARRLFDGMPERSVVSYTTMVDALMKRGSVRDAVELYRQCPLCS 209
Query: 204 --------------------LKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHG 243
L +F EM+ G N+ T+ SV+ AC + F+ S+ G
Sbjct: 210 VPFFTAMIAGFVLNELPKDALGVFHEMLSCGVSPNEITLVSVIKACIGAGEFDLAMSIVG 269
Query: 244 YTVRTSLKP--------------------------------NIILDTALIDLYSKCQKVE 271
++++L +++ TAL+D+Y++ +E
Sbjct: 270 LAMKSNLLDKNLGVRNSLITLYLRKGDADAARRMFDEMEVRDVVSWTALLDVYAELGDLE 329
Query: 272 VAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGV 331
A+RV D M +RN V W ++ H G +E + L++ ++ P+ F V
Sbjct: 330 GARRVLDEMPERNEVSWGTLVARHEQKGNAKEAVSLYSQML-----ADGCRPNISCFSSV 384
Query: 332 ICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDN 391
+ AC + L GRK Q + F + ++Y + +A+ I +P+ N
Sbjct: 385 LGACASLQDLRSGRKIHNQTLKMACSNNVFVSS-ALIDMYCKCKQLPDAQMIFYSLPQKN 443
Query: 392 DNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDV 451
+ W SL+S + E L F M ++ + + +++ YA Q+ D
Sbjct: 444 ------IVCWNSLISGYSNNSKMVEAEEL---FKKMPARNVASWNSIISGYAQNRQFIDA 494
Query: 452 ARVRELMKKRRMGRMPG 468
+ M G+ PG
Sbjct: 495 LKSFHAMLAS--GQSPG 509
>gi|347954490|gb|AEP33745.1| chloroplast biogenesis 19, partial [Arabis hirsuta]
Length = 435
Score = 233 bits (595), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 132/407 (32%), Positives = 213/407 (52%), Gaps = 14/407 (3%)
Query: 82 GFMPNSYTFVSLFGSCAK--TGCVERGGMCHGLALKNGVD-FELPVMNSLINMYGCFGAM 138
G PN TF++L +G G + HG A K G+D + V +++ MY G
Sbjct: 9 GVEPNHITFIALLSGWGDLLSGSEALGDLLHGYACKLGLDRAHVMVGTAILGMYSKRGRF 68
Query: 139 DCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSG 198
AR +F M ++ ++WN+++ G++R+G + A +LFD MPER+++SW MI+G+ K G
Sbjct: 69 RKARLVFDYMEEKNSVTWNTMIDGYMRNGQVDDAVKLFDEMPERDLISWTAMINGFVKKG 128
Query: 199 NPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDT 258
+L FREM SG + + + + L AC + G +H Y V K N+ +
Sbjct: 129 FHEEALAWFREMQISGVKPDYVAIIAALAACTNLGALSFGLWIHRYVVSQDFKNNVRVSN 188
Query: 259 ALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAG 318
+LIDLY +C VE A++VFD M R +V WN++I+G +G E + F +
Sbjct: 189 SLIDLYCRCGCVEFARQVFDKMEKRTVVSWNSVIVGFAANGHAHESLVYFRKMQE----- 243
Query: 319 GSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTE 378
P+ +TF G + AC L+ EG +YF+ M Y+I P HY C+ +LY+ A E
Sbjct: 244 EGFKPNAVTFTGALAACNHVGLVEEGLRYFQSMKRDYRISPRIEHYGCLVDLYSRAGRLE 303
Query: 379 EAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQG-AVAMVERLAKSFVDMDPQDFSRYQF 437
+A ++++ MP M ++ SLL+ CR QG + ER+ K D++ + S Y
Sbjct: 304 DALKVVQSMP-----MKPNEVVIGSLLAACRTQGNNTVLAERVMKHLSDLNVKSHSNYVI 358
Query: 438 LLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLKEVVEKLKVG 484
L N+YA G+WE +++R MK + + PG +++ + G
Sbjct: 359 LSNMYAADGKWEGASKMRRKMKGLGLKKEPGFSSIEIDDCTHVFMAG 405
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 61/247 (24%), Positives = 99/247 (40%), Gaps = 32/247 (12%)
Query: 35 GSPDYTVLVFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLF 94
G D V +F + A+I + ++ + ++ +M +G P+ ++
Sbjct: 97 GQVDDAVKLFDEMPERDLISWTAMINGFVKKGFHEEALAWFREMQISGVKPDYVAIIAAL 156
Query: 95 GSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLI 154
+C G + G H + + V NSLI++Y G ++ AR +F +M R ++
Sbjct: 157 AACTNLGALSFGLWIHRYVVSQDFKNNVRVSNSLIDLYCRCGCVEFARQVFDKMEKRTVV 216
Query: 155 SWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSG 214
SWNS++ G +G AHE SL FR+M + G
Sbjct: 217 SWNSVIVGFAANGH---AHE----------------------------SLVYFRKMQEEG 245
Query: 215 FRGNDKTMASVLTACGRSARFNEG-RSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVA 273
F+ N T L AC EG R + P I L+DLYS+ ++E A
Sbjct: 246 FKPNAVTFTGALAACNHVGLVEEGLRYFQSMKRDYRISPRIEHYGCLVDLYSRAGRLEDA 305
Query: 274 QRVFDSM 280
+V SM
Sbjct: 306 LKVVQSM 312
Score = 42.4 bits (98), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 42/212 (19%), Positives = 93/212 (43%), Gaps = 8/212 (3%)
Query: 12 ITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSNSCVPDQG 71
+ S F NN + +L+ G ++ VF + N+VI ++ + +
Sbjct: 175 VVSQDFKNNVRVSNSLIDLYCRCGCVEFARQVFDKMEKRTVVSWNSVIVGFAANGHAHES 234
Query: 72 VVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNG--VDFELPVMNSLI 129
+V++ +M + GF PN+ TF +C G VE G+ + ++K + + L+
Sbjct: 235 LVYFRKMQEEGFKPNAVTFTGALAACNHVGLVEE-GLRYFQSMKRDYRISPRIEHYGCLV 293
Query: 130 NMYGCFGAMDCARNMF--VQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVS- 186
++Y G ++ A + + M P +++ + + + + + A + + + NV S
Sbjct: 294 DLYSRAGRLEDALKVVQSMPMKPNEVVIGSLLAACRTQGNNTVLAERVMKHLSDLNVKSH 353
Query: 187 --WNIMISGYSKSGNPGCSLKLFREMMKSGFR 216
+ I+ + Y+ G + K+ R+M G +
Sbjct: 354 SNYVILSNMYAADGKWEGASKMRRKMKGLGLK 385
>gi|449437930|ref|XP_004136743.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g13770, mitochondrial-like [Cucumis sativus]
Length = 666
Score = 233 bits (595), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 135/446 (30%), Positives = 226/446 (50%), Gaps = 41/446 (9%)
Query: 56 NAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALK 115
A+I AYS + + +++M+++ PN +TF ++ SC + E G H +A+K
Sbjct: 160 TAMISAYSQRGFAFEALNLFVEMLRSDTEPNHFTFATILTSCYGSLGFETGRQIHSIAIK 219
Query: 116 NGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHEL 175
+ + V +SL++MY +SG + AH +
Sbjct: 220 RNYESHMFVGSSLLDMYA-------------------------------KSGRICDAHGV 248
Query: 176 FDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARF 235
F +PER+VV+ +ISGY++ G +LKLFR++ G N T ASVLTA A
Sbjct: 249 FHCLPERDVVACTAIISGYAQMGLDEEALKLFRQLQIEGMNSNSVTYASVLTALSGLAAL 308
Query: 236 NEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGH 295
N G+ VH + +R+ ++L +LID+YSKC V A+R+FDSM +R + WNAM++G+
Sbjct: 309 NHGKQVHSHVLRSGQYSYVVLLNSLIDMYSKCGNVCYARRIFDSMPERTCISWNAMLVGY 368
Query: 296 CIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFY 355
HG E ++LF + + PD IT++ V+ C +L G + F M++
Sbjct: 369 SKHGMAREVLELFKLMREEN----KVKPDSITYLAVLSGCSHGQLEDMGLEIFYNMVNGK 424
Query: 356 K-IKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAV 414
I+P+ HY C+ +L A EEA + ++KMP + +W SLL CR V
Sbjct: 425 DGIEPDIGHYGCVVDLLGRAGRVEEAFDFIKKMP-----FVPTAAIWGSLLGSCRVHSDV 479
Query: 415 AMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDL 474
+ + + ++++P++ Y L N+YA AG+WED+ +R+LM+++ + + PG V+L
Sbjct: 480 EIGIIVGQKLLELEPENAGNYVILSNLYASAGKWEDMRNIRDLMQEKAVTKEPGRSWVEL 539
Query: 475 KEVVEKLKVGHFWRGGMKEEVNKMME 500
++V +E K+ E
Sbjct: 540 DQIVHTFHASDHTHPRREEVAKKVKE 565
Score = 107 bits (268), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 84/316 (26%), Positives = 151/316 (47%), Gaps = 41/316 (12%)
Query: 169 MSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTA 228
+ A E+FD MP++NVVSW MIS YS+ G +L LF EM++S N T A++LT+
Sbjct: 141 LGDAREMFDEMPQKNVVSWTAMISAYSQRGFAFEALNLFVEMLRSDTEPNHFTFATILTS 200
Query: 229 CGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCW 288
C S F GR +H ++ + + ++ + ++L+D+Y+K ++ A VF + +R++V
Sbjct: 201 CYGSLGFETGRQIHSIAIKRNYESHMFVGSSLLDMYAKSGRICDAHGVFHCLPERDVVAC 260
Query: 289 NAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRK-- 346
A+I G+ G EE +KLF L + G ++ + +T+ V+ A L G++
Sbjct: 261 TAIISGYAQMGLDEEALKLFRQL---QIEG--MNSNSVTYASVLTALSGLAALNHGKQVH 315
Query: 347 -------------YFRQMIDFY----------KIKPNFAHYWC-----MANLYAGAELTE 378
+ID Y +I + C M Y+ +
Sbjct: 316 SHVLRSGQYSYVVLLNSLIDMYSKCGNVCYARRIFDSMPERTCISWNAMLVGYSKHGMAR 375
Query: 379 EAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVD----MDPQDFSR 434
E E+ + M E+N + +SI ++++LS C M + + V+ ++P D
Sbjct: 376 EVLELFKLMREEN-KVKPDSITYLAVLSGCSHGQLEDMGLEIFYNMVNGKDGIEP-DIGH 433
Query: 435 YQFLLNVYAVAGQWED 450
Y ++++ AG+ E+
Sbjct: 434 YGCVVDLLGRAGRVEE 449
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 54/203 (26%), Positives = 92/203 (45%), Gaps = 7/203 (3%)
Query: 43 VFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGC 102
VF C+ A+I Y+ + ++ + + Q+ G NS T+ S+ + +
Sbjct: 248 VFHCLPERDVVACTAIISGYAQMGLDEEALKLFRQLQIEGMNSNSVTYASVLTALSGLAA 307
Query: 103 VERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSG 162
+ G H L++G + ++NSLI+MY G + AR +F M R ISWN+++ G
Sbjct: 308 LNHGKQVHSHVLRSGQYSYVVLLNSLIDMYSKCGNVCYARRIFDSMPERTCISWNAMLVG 367
Query: 163 HVRSGDMSAAHELFDIMPERNVV-----SWNIMISGYSKSGNPGCSLKLFREMM--KSGF 215
+ + G ELF +M E N V ++ ++SG S L++F M+ K G
Sbjct: 368 YSKHGMAREVLELFKLMREENKVKPDSITYLAVLSGCSHGQLEDMGLEIFYNMVNGKDGI 427
Query: 216 RGNDKTMASVLTACGRSARFNEG 238
+ V+ GR+ R E
Sbjct: 428 EPDIGHYGCVVDLLGRAGRVEEA 450
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 48/181 (26%), Positives = 82/181 (45%), Gaps = 18/181 (9%)
Query: 215 FRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQ 274
F G D ++L C EG+ VH + ++T P++ L T LI LY+KC + A+
Sbjct: 90 FEGYD----TILNECVSQRAIREGQRVHTHMIKTCYLPSVYLRTRLIVLYNKCDCLGDAR 145
Query: 275 RVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICA 334
+FD M +N+V W AMI + G E + LF ++ P+ TF ++ +
Sbjct: 146 EMFDEMPQKNVVSWTAMISAYSQRGFAFEALNLFVEMLRSDT-----EPNHFTFATILTS 200
Query: 335 CVRAELLTEGRKYFRQMIDFYKIKPNFAHYW----CMANLYAGAELTEEAEEILRKMPED 390
C + GR+ I IK N+ + + ++YA + +A + +PE
Sbjct: 201 CYGSLGFETGRQ-----IHSIAIKRNYESHMFVGSSLLDMYAKSGRICDAHGVFHCLPER 255
Query: 391 N 391
+
Sbjct: 256 D 256
>gi|255542116|ref|XP_002512122.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223549302|gb|EEF50791.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 800
Score = 233 bits (595), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 143/494 (28%), Positives = 244/494 (49%), Gaps = 44/494 (8%)
Query: 27 LLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPN 86
L+++ A FG Y V I N +I Y++ + + + ++QM + G +P+
Sbjct: 342 LIEYYAQFGKLSYCEKVLHTIGKRNIISWNMLISVYASQGLFKEALGIFVQMQRQGQIPD 401
Query: 87 SYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFV 146
S++ S +CA G + G HG A+K + E V NSLI+MY
Sbjct: 402 SFSLSSSISACANVGLLWLGHQIHGYAIKRHILDEF-VQNSLIDMYS------------- 447
Query: 147 QMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKL 206
+ G + A+ +FD + ++VV+WN MI G+S+ GN +++L
Sbjct: 448 ------------------KCGHVDLAYLIFDRIQSKSVVAWNSMICGFSQIGNSLEAIRL 489
Query: 207 FREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSK 266
F +M + N+ T + + AC +G+ +H + +K ++ +DTALID+Y+K
Sbjct: 490 FDQMYLNCLDMNEVTFLTAIQACSHMGHLEKGKWLHHKLIAYGVKKDLFIDTALIDMYAK 549
Query: 267 CQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEI 326
C + +A RVFDSM++R++V W+AMI G +HG + I LF ++ + P++I
Sbjct: 550 CGDLRIAHRVFDSMSERSVVSWSAMIGGCGMHGDIDAAISLFAEMIQ-----REMKPNDI 604
Query: 327 TFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRK 386
TF+ ++ AC + + EG+ YF M +F +++PN H+ CM +L + A +EA I+
Sbjct: 605 TFMNILSACSHSGYVEEGKFYFNSMKNF-EVEPNLEHFACMVDLLSRAGDLDEAYRIINS 663
Query: 387 MPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAG 446
MP E+ +W +LL+ CR + M+ + + +DM D Y L N+YA G
Sbjct: 664 MP-----FPAEASIWGALLNGCRIHQRMDMIRNIERDLLDMRTDDTGYYTLLSNIYAEEG 718
Query: 447 QWEDVARVRELMKKRRMGRMPGCRLVDLKEVVEKLKVGHFWRGGMKEEVNKMMECRQSRS 506
W+ +VR MK + ++PG ++L + V + G +K E+N +E QS +
Sbjct: 719 NWDVSRKVRSAMKGIGLKKVPGYSTIELDKKVYRFGAGDVSHWQVK-EINTFLENFQSLA 777
Query: 507 LATVSKQLPWHKNE 520
W NE
Sbjct: 778 SEQACNVSCWTDNE 791
Score = 135 bits (340), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 91/345 (26%), Positives = 161/345 (46%), Gaps = 37/345 (10%)
Query: 1 MKQLLQIQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIK 60
++ L + +HL+ +GL + T L++ + G + LVF+ NP +F +IK
Sbjct: 14 LRPLTLLHSHLLVTGLHHDPQAST-KLIESYSQIGCLQSSKLVFETFQNPDSFMWAVLIK 72
Query: 61 AYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDF 120
+ S + + Y +MI + + F S+ +CA G ++ G HG +K G+D
Sbjct: 73 CHVWSNFCGEAISLYNKMIYKQIPISDFIFSSVLRACAGFGNLDVGEEVHGRIIKYGLDV 132
Query: 121 ELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMP 180
+ V SL+ MYG G + S A ++FD M
Sbjct: 133 DHVVETSLLGMYGDLGCL-------------------------------SNAKKVFDNMT 161
Query: 181 ERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRS 240
R++VSW+ +IS Y +G L++FR ++ + TM S+ ACG +S
Sbjct: 162 TRDLVSWSSIISCYVDNGESSEGLEMFRLLVSQDVELDSVTMLSIAGACGELGFLRLAKS 221
Query: 241 VHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGK 300
VHG +R ++ L+ AL+ +YS+C A+R+F +M +R++ W AMI +
Sbjct: 222 VHGCIIRQRIETRGPLNDALVLMYSRCDDFSSAERIFSNMFNRSIASWTAMISCYNRSRW 281
Query: 301 PEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGR 345
++ +++F ++ VA P+ +T + V+ +C LL EG+
Sbjct: 282 FKQALQVFVEMLEFKVA-----PNAVTIMAVLSSCAGFNLLREGK 321
Score = 112 bits (280), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 93/404 (23%), Positives = 175/404 (43%), Gaps = 51/404 (12%)
Query: 33 DFGSPDYTVLVFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVS 92
DF S + +F + N A+I Y+ S Q + +++M++ PN+ T ++
Sbjct: 250 DFSSAER---IFSNMFNRSIASWTAMISCYNRSRWFKQALQVFVEMLEFKVAPNAVTIMA 306
Query: 93 LFGSCAKTGCVERGGMCHGLALKNGVDFELPVMN-SLINMYGCFGAMDCARNMFVQMSPR 151
+ SCA + G H A+K+ +D + + +LI Y FG +
Sbjct: 307 VLSSCAGFNLLREGKSVHCYAVKH-IDLDDDSLGPALIEYYAQFGKL------------- 352
Query: 152 DLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMM 211
S ++ + +RN++SWN++IS Y+ G +L +F +M
Sbjct: 353 ------------------SYCEKVLHTIGKRNIISWNMLISVYASQGLFKEALGIFVQMQ 394
Query: 212 KSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVE 271
+ G + +++S ++AC G +HGY ++ + + +LID+YSKC V+
Sbjct: 395 RQGQIPDSFSLSSSISACANVGLLWLGHQIHGYAIKRHILDEFV-QNSLIDMYSKCGHVD 453
Query: 272 VAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGV 331
+A +FD + +++V WN+MI G G E I+LF + + +E+TF+
Sbjct: 454 LAYLIFDRIQSKSVVAWNSMICGFSQIGNSLEAIRLFDQMYLNC-----LDMNEVTFLTA 508
Query: 332 ICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDN 391
I AC L +G+ ++I Y +K + + ++YA A + M E +
Sbjct: 509 IQACSHMGHLEKGKWLHHKLIA-YGVKKDLFIDTALIDMYAKCGDLRIAHRVFDSMSERS 567
Query: 392 DNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFV--DMDPQDFS 433
+ W +++ C G + L + +M P D +
Sbjct: 568 ------VVSWSAMIGGCGMHGDIDAAISLFAEMIQREMKPNDIT 605
Score = 99.0 bits (245), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 80/341 (23%), Positives = 147/341 (43%), Gaps = 37/341 (10%)
Query: 6 QIQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSNS 65
++ +I GL ++ T +LL D G VF + +++I Y ++
Sbjct: 120 EVHGRIIKYGLDVDHVVET-SLLGMYGDLGCLSNAKKVFDNMTTRDLVSWSSIISCYVDN 178
Query: 66 CVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVM 125
+G+ + ++ +S T +S+ G+C + G + HG ++ ++ P+
Sbjct: 179 GESSEGLEMFRLLVSQDVELDSVTMLSIAGACGELGFLRLAKSVHGCIIRQRIETRGPLN 238
Query: 126 NSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVV 185
++L+ MY R D S+A +F M R++
Sbjct: 239 DALVLMYS-------------------------------RCDDFSSAERIFSNMFNRSIA 267
Query: 186 SWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYT 245
SW MIS Y++S +L++F EM++ N T+ +VL++C EG+SVH Y
Sbjct: 268 SWTAMISCYNRSRWFKQALQVFVEMLEFKVAPNAVTIMAVLSSCAGFNLLREGKSVHCYA 327
Query: 246 VRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGI 305
V+ + L ALI+ Y++ K+ ++V ++ RN++ WN +I + G +E +
Sbjct: 328 VKHIDLDDDSLGPALIEYYAQFGKLSYCEKVLHTIGKRNIISWNMLISVYASQGLFKEAL 387
Query: 306 KLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRK 346
+F + G I PD + I AC LL G +
Sbjct: 388 GIFVQMQR----QGQI-PDSFSLSSSISACANVGLLWLGHQ 423
>gi|41469497|gb|AAS07282.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
Length = 476
Score = 233 bits (595), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 142/484 (29%), Positives = 227/484 (46%), Gaps = 13/484 (2%)
Query: 1 MKQLLQIQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIK 60
M L Q+ A L+ SGL + + + + D Y + + P F N I+
Sbjct: 1 MAHLRQLHAALVKSGLARDPIAASRAVAFCAGDGRDAAYAARLVRHHPRPNAFMWNTAIR 60
Query: 61 AYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDF 120
A ++ P V ++ M+ + P TF SLF + A+ G G HG+ +K G+
Sbjct: 61 ALADGPGPGAAVALFVDMLGSPTPPERRTFPSLFAAYARLGRAGDGAGLHGMVVKLGLGG 120
Query: 121 ELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMP 180
+ V NS+I MY GA D A + + D ++ NS + R+G + A +FD MP
Sbjct: 121 DAYVRNSVIAMYASRGAADEAIALLARCEAFDAVACNSAIVALARAGRVDEARAVFDGMP 180
Query: 181 ERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRS 240
R V +W+ M+S YS+ +++LF M G N + SVL C +G
Sbjct: 181 ARTVATWSAMVSAYSRDSRCHDAVELFSAMQAEGVEPNANVLVSVLGCCASLGALEQGAW 240
Query: 241 VHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRN---LVCWNAMILGHCI 297
VH Y + + N ++ TAL+D+Y KC + A+ VFD+ R L WN+M+LGH +
Sbjct: 241 VHAYIDKHDVAMNALVVTALVDMYCKCGDIRKAREVFDASRSRGQAKLSSWNSMMLGHAV 300
Query: 298 HGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKI 357
HG+ E LF+ L + PD +TFI ++ A + + E + M + +
Sbjct: 301 HGQWREAAALFSELRP-----HGLRPDNVTFIAILMAYGHSGMADEAKAVLASMASEHGV 355
Query: 358 KPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMV 417
P HY C+ + A A EAE + MP ++ ++ +W +LLS CR G
Sbjct: 356 VPGVEHYGCLVDALARAGRLREAEGAIAAMP-----VAPDAAVWGALLSGCRLHGDAEAA 410
Query: 418 ERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLKEV 477
R A+ V DP+D Y + A G+ A VR M++ +G++PGC ++++ V
Sbjct: 411 ARAAREAVRCDPRDSGAYVLAASALARGGEARRGAAVRGRMREEGVGKVPGCSMIEVDGV 470
Query: 478 VEKL 481
V +
Sbjct: 471 VHEF 474
>gi|242084708|ref|XP_002442779.1| hypothetical protein SORBIDRAFT_08g002705 [Sorghum bicolor]
gi|241943472|gb|EES16617.1| hypothetical protein SORBIDRAFT_08g002705 [Sorghum bicolor]
Length = 560
Score = 233 bits (594), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 140/451 (31%), Positives = 222/451 (49%), Gaps = 56/451 (12%)
Query: 46 CINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKT----- 100
C+ +P FC VI A+S+S P + + + F +L SCA+
Sbjct: 105 CVLSPSLFC--PVISAFSSSPAPSASLTLFNHVSSLSIPTPLPAFPALLKSCARAFRLSR 162
Query: 101 -----GCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLIS 155
+G H LK G + V N+L++MYG FG + AR F +M ++ +S
Sbjct: 163 RARAAVFAAKGAELHCRVLKLGCGQDRYVQNALVSMYGQFGRLGEARKAFDEMPVKNAVS 222
Query: 156 WNSIVSGH-------------------------------VRSGDMSAAHELFDIMPERNV 184
WN++V H VR GD+ A +F MPER+V
Sbjct: 223 WNALVVAHGVSGDLQGAERVSQATPERNISWWNSEIMRNVRLGDLVEAARIFRDMPERDV 282
Query: 185 VSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGY 244
+SWN +ISGY+K G +L +FR+M K+ + T+ S L AC GR +H Y
Sbjct: 283 ISWNSLISGYAKLGMYSRALDVFRDMWKNDIEPTELTVVSALGACAEVGELELGRGIHDY 342
Query: 245 TVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEG 304
++ + + AL+D+Y+KC +++A++VFDSM+ +++ CWN MI+G +HG +
Sbjct: 343 LKSKGIEADGYVGNALVDMYAKCGNLKLARQVFDSMSIKDVTCWNTMIVGLSVHGHSHDA 402
Query: 305 IKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHY 364
+KLF + +I PD +TF+GV+ AC + LL EGR YF+ MI+ YKI P+ HY
Sbjct: 403 LKLFDLM--------NIEPDHVTFLGVLTACSHSGLLNEGRVYFKSMIEDYKIVPSMKHY 454
Query: 365 WCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSF 424
C+ N+ EA +++ MP + S++W +++ CR G + +R
Sbjct: 455 GCIINMLCRYGKVHEAYQMINDMP-----VKANSVLWKMVMAACRVHGHFDIADRAVHRM 509
Query: 425 VDMDPQDFSRYQFLLNVYAVAGQWEDVARVR 455
++ P D + N YA A +W+DV +R
Sbjct: 510 HELMPMDDGDVITVSNAYAEAERWDDVEHLR 540
Score = 78.6 bits (192), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 68/284 (23%), Positives = 117/284 (41%), Gaps = 39/284 (13%)
Query: 19 NNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQM 78
N S+W +++ + G +F+ + N++I Y+ + + + + M
Sbjct: 250 NISWWNSEIMR-NVRLGDLVEAARIFRDMPERDVISWNSLISGYAKLGMYSRALDVFRDM 308
Query: 79 IKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAM 138
KN P T VS G+CA+ G +E G H G++ + V N+L++MY G +
Sbjct: 309 WKNDIEPTELTVVSALGACAEVGELELGRGIHDYLKSKGIEADGYVGNALVDMYAKCGNL 368
Query: 139 DCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSG 198
AR +F MS +D+ WN+++ G G A +LFD+M
Sbjct: 369 KLARQVFDSMSIKDVTCWNTMIVGLSVHGHSHDALKLFDLM------------------- 409
Query: 199 NPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRT-SLKPNIILD 257
+ T VLTAC S NEGR + + P++
Sbjct: 410 ---------------NIEPDHVTFLGVLTACSHSGLLNEGRVYFKSMIEDYKIVPSMKHY 454
Query: 258 TALIDLYSKCQKVEVAQRVFDSMADR-NLVCWNAMILGHC-IHG 299
+I++ + KV A ++ + M + N V W M++ C +HG
Sbjct: 455 GCIINMLCRYGKVHEAYQMINDMPVKANSVLWK-MVMAACRVHG 497
>gi|357133649|ref|XP_003568436.1| PREDICTED: pentatricopeptide repeat-containing protein At4g14050,
mitochondrial-like [Brachypodium distachyon]
Length = 610
Score = 233 bits (594), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 141/469 (30%), Positives = 240/469 (51%), Gaps = 13/469 (2%)
Query: 2 KQLLQIQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKA 61
+ L + A LI GL + + + ++ PD T L+F ++++ A
Sbjct: 20 RSLRRAHARLIKEGLAQHPPAPALLVSAYAKSRLLPD-TRLLFDETPRRDLHLYSSLLAA 78
Query: 62 YSNSCVPDQGVVFYLQMIK-NGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDF 120
S+S P+ + +M+ + P+ + S+ + A+ + G HG + +
Sbjct: 79 VSHSESPELVLPLLRRMLSADALRPDHFVLASIASATARLRSLCLGKQLHGHFVASPYSS 138
Query: 121 ELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMP 180
+ V +SLI+MY G D AR +F + ++ + W +++SG+V +G A ELF MP
Sbjct: 139 DDVVKSSLIDMYCKCGVPDDARKVFDSIVAKNSVMWTALISGYVLNGRSDEALELFRSMP 198
Query: 181 ERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDK-TMASVLTACGRSARFNEGR 239
R + +W +ISG+ +SG ++KLF +M + G +D ++S + A GR
Sbjct: 199 GRTLFAWTALISGFVRSGESVSAVKLFVDMRRDGVSIDDAFVLSSAIGGAADLAAHVLGR 258
Query: 240 SVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHG 299
+H T+R ++I+ A++D+YSKC + A+ VF+ + R+++ W M++G HG
Sbjct: 259 QLHSLTMRLGFSSSMIVGNAVVDMYSKCSDIHSAREVFEEITGRDIISWTTMLVGEAQHG 318
Query: 300 KPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKP 359
+ EE L+ +V +AG + P+E+TF+G+I AC A L+ +GR+ F M Y I P
Sbjct: 319 RAEEAFSLYDRMV---LAG--VKPNEVTFVGLIYACSHAGLVQKGRQLFDSMKGEYGINP 373
Query: 360 NFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVER 419
HY C +L + + EAEE++ MP D + W SLLS C+ M R
Sbjct: 374 RLQHYTCYLDLLSRSGHLAEAEELITTMPYVPDEAT-----WASLLSACKKYNNAEMSIR 428
Query: 420 LAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPG 468
+A + +++ P+ S Y L NVYAV G+W+ V VR+LM + + PG
Sbjct: 429 VADNLLELRPKYPSTYVLLSNVYAVNGKWDSVDTVRKLMADMEIRKEPG 477
>gi|359483532|ref|XP_002265722.2| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
chloroplastic-like [Vitis vinifera]
Length = 824
Score = 233 bits (594), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 136/458 (29%), Positives = 228/458 (49%), Gaps = 42/458 (9%)
Query: 27 LLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPN 86
LL + G+ + + VF+ + ++I Y+ + D V + +M K G P+
Sbjct: 292 LLDMYSKSGNLNSAIQVFETMGERSVVSWTSMIAGYAREGLSDMSVRLFHEMEKEGISPD 351
Query: 87 SYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFV 146
+T ++ +CA TG +E G H +N + +L V N+L++MY
Sbjct: 352 IFTITTILHACACTGLLENGKDVHNYIKENKMQSDLFVSNALMDMYA------------- 398
Query: 147 QMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKL 206
+ G M AH +F M +++VSWN MI GYSK+ P +L L
Sbjct: 399 ------------------KCGSMGDAHSVFSEMQVKDIVSWNTMIGGYSKNSLPNEALNL 440
Query: 207 FREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSK 266
F EM + + N TMA +L AC A G+ +HG+ +R + + AL+D+Y K
Sbjct: 441 FVEMQYNS-KPNSITMACILPACASLAALERGQEIHGHILRNGFSLDRHVANALVDMYLK 499
Query: 267 CQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEI 326
C + +A+ +FD + +++LV W MI G+ +HG E I F + N I PDE+
Sbjct: 500 CGALGLARLLFDMIPEKDLVSWTVMIAGYGMHGYGSEAIAAFNEMRN-----SGIEPDEV 554
Query: 327 TFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRK 386
+FI ++ AC + LL EG +F M + I+P HY C+ +L A A +A + ++
Sbjct: 555 SFISILYACSHSGLLDEGWGFFNMMRNNCCIEPKSEHYACIVDLLARAGNLSKAYKFIKM 614
Query: 387 MPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAG 446
MP + D + +W +LL CR V + E++A+ +++P++ Y L N+YA A
Sbjct: 615 MPIEPD-----ATIWGALLCGCRIYHDVKLAEKVAEHVFELEPENTGYYVLLANIYAEAE 669
Query: 447 QWEDVARVRELMKKRRMGRMPGCRLVDLKEVVEKLKVG 484
+WE+V ++RE + +R + + PGC +++K V G
Sbjct: 670 KWEEVKKLRERIGRRGLRKNPGCSWIEIKGKVHIFVTG 707
Score = 140 bits (353), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 82/291 (28%), Positives = 142/291 (48%), Gaps = 37/291 (12%)
Query: 56 NAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALK 115
N++I Y ++ + ++G+ + QM+ G + T VS+ C+ TG + G HG A+K
Sbjct: 220 NSMISGYVSNGLSEKGLDLFEQMLLLGINTDLATMVSVVAGCSNTGMLLLGRALHGYAIK 279
Query: 116 NGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHEL 175
EL + N L++MY +SG++++A ++
Sbjct: 280 ASFGKELTLNNCLLDMYS-------------------------------KSGNLNSAIQV 308
Query: 176 FDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARF 235
F+ M ER+VVSW MI+GY++ G S++LF EM K G + T+ ++L AC +
Sbjct: 309 FETMGERSVVSWTSMIAGYAREGLSDMSVRLFHEMEKEGISPDIFTITTILHACACTGLL 368
Query: 236 NEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGH 295
G+ VH Y ++ ++ + AL+D+Y+KC + A VF M +++V WN MI G+
Sbjct: 369 ENGKDVHNYIKENKMQSDLFVSNALMDMYAKCGSMGDAHSVFSEMQVKDIVSWNTMIGGY 428
Query: 296 CIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRK 346
+ P E + LF + + P+ IT ++ AC L G++
Sbjct: 429 SKNSLPNEALNLFVEMQYNS------KPNSITMACILPACASLAALERGQE 473
Score = 94.7 bits (234), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 80/348 (22%), Positives = 134/348 (38%), Gaps = 86/348 (24%)
Query: 89 TFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQM 148
T+ S+ CA ++ G H + N V+ + + + L+ MY
Sbjct: 103 TYCSVLQLCADLKSIQDGRRIHSIIQSNDVEVDGVLGSKLVFMY---------------- 146
Query: 149 SPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFR 208
V GD+ +FD + V WN++++GY+K GN SL LF+
Sbjct: 147 ---------------VTCGDLREGRRIFDKVANEKVFLWNLLMNGYAKIGNFRESLSLFK 191
Query: 209 EMMKSGFR-----------------------------------GND-------------- 219
M + G R G D
Sbjct: 192 RMRELGIRRVESARKLFDELGDRDVISWNSMISGYVSNGLSEKGLDLFEQMLLLGINTDL 251
Query: 220 KTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDS 279
TM SV+ C + GR++HGY ++ S + L+ L+D+YSK + A +VF++
Sbjct: 252 ATMVSVVAGCSNTGMLLLGRALHGYAIKASFGKELTLNNCLLDMYSKSGNLNSAIQVFET 311
Query: 280 MADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAE 339
M +R++V W +MI G+ G + ++LF + ISPD T ++ AC
Sbjct: 312 MGERSVVSWTSMIAGYAREGLSDMSVRLFHEM-----EKEGISPDIFTITTILHACACTG 366
Query: 340 LLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKM 387
LL G K I K++ + + ++YA +A + +M
Sbjct: 367 LLENG-KDVHNYIKENKMQSDLFVSNALMDMYAKCGSMGDAHSVFSEM 413
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 89/392 (22%), Positives = 150/392 (38%), Gaps = 89/392 (22%)
Query: 7 IQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSNSC 66
I+ + + S LF +N+ L+ A GS VF + N +I YS +
Sbjct: 378 IKENKMQSDLFVSNA-----LMDMYAKCGSMGDAHSVFSEMQVKDIVSWNTMIGGYSKNS 432
Query: 67 VPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMN 126
+P++ + +++M N PNS T + +CA +ERG HG L+NG + V N
Sbjct: 433 LPNEALNLFVEMQYNS-KPNSITMACILPACASLAALERGQEIHGHILRNGFSLDRHVAN 491
Query: 127 SLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVS 186
+L++MY GA+ AR +F + +DL+SW
Sbjct: 492 ALVDMYLKCGALGLARLLFDMIPEKDLVSWT----------------------------- 522
Query: 187 WNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTV 246
+MI+GY G ++ F EM SG ++ + S+L AC S +EG
Sbjct: 523 --VMIAGYGMHGYGSEAIAAFNEMRNSGIEPDEVSFISILYACSHSGLLDEGWGFFNMMR 580
Query: 247 RT-SLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGI 305
++P ++DL ++ + A + M
Sbjct: 581 NNCCIEPKSEHYACIVDLLARAGNLSKAYKFIKMMP------------------------ 616
Query: 306 KLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKP-NFAHY 364
I PD + ++C C + K + ++++P N +Y
Sbjct: 617 ---------------IEPDATIWGALLCGCRIYHDVKLAEKVAEHV---FELEPENTGYY 658
Query: 365 WCMANLYAGAELTEEAEEI--------LRKMP 388
+AN+YA AE EE +++ LRK P
Sbjct: 659 VLLANIYAEAEKWEEVKKLRERIGRRGLRKNP 690
Score = 62.0 bits (149), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 70/337 (20%), Positives = 131/337 (38%), Gaps = 78/337 (23%)
Query: 184 VVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHG 243
+ +NI I + + GN +++L + K +T SVL C +GR +H
Sbjct: 68 ITDYNIEICRFCELGNLRRAMELINQSPKPDLEL--RTYCSVLQLCADLKSIQDGRRIHS 125
Query: 244 YTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMA---------------------- 281
++ + +L + L+ +Y C + +R+FD +A
Sbjct: 126 IIQSNDVEVDGVLGSKLVFMYVTCGDLREGRRIFDKVANEKVFLWNLLMNGYAKIGNFRE 185
Query: 282 ---------------------------DRNLVCWNAMILGHCIHGKPEEGIKLFTALVNG 314
DR+++ WN+MI G+ +G E+G+ LF ++
Sbjct: 186 SLSLFKRMRELGIRRVESARKLFDELGDRDVISWNSMISGYVSNGLSEKGLDLFEQML-- 243
Query: 315 TVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYW----CMANL 370
+ G I+ D T + V+ C +L GR + Y IK +F C+ ++
Sbjct: 244 -LLG--INTDLATMVSVVAGCSNTGMLLLGRA-----LHGYAIKASFGKELTLNNCLLDM 295
Query: 371 YAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQ 430
Y+ + A ++ M E + + W S+++ +G M RL F +M+ +
Sbjct: 296 YSKSGNLNSAIQVFETMGERS------VVSWTSMIAGYAREGLSDMSVRL---FHEMEKE 346
Query: 431 DFSRYQF----LLNVYAVAGQWEDVARVRELMKKRRM 463
S F +L+ A G E+ V +K+ +M
Sbjct: 347 GISPDIFTITTILHACACTGLLENGKDVHNYIKENKM 383
>gi|449487256|ref|XP_004157540.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g22070-like [Cucumis sativus]
Length = 782
Score = 233 bits (594), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 134/449 (29%), Positives = 233/449 (51%), Gaps = 17/449 (3%)
Query: 56 NAVIKAYSNSCVPDQGVVFYLQMIKN-GFMPNSYTFVSLFGSCAKTGCVERGGMCHGLAL 114
N++I YS + + + +M+ P+++T S+ +CA + G H L
Sbjct: 243 NSMISGYSQQGYNLEALAIFSKMLNEPSLKPDNFTLASILSACANLEKLNIGKQIHAYIL 302
Query: 115 KNGVDFELPVMNSLINMYGCFGAMDCARNMFVQ---MSPRDLISWNSIVSGHVRSGDMSA 171
+ + V N+LI+MY G ++ AR + V+ S ++I++ S++ G+ + G++
Sbjct: 303 RAETETSGAVGNALISMYAKSGGVEIAR-LIVEHNRTSNLNIIAFTSLLDGYTKLGNVKP 361
Query: 172 AHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGR 231
A E+F+ + +R+VV+W MI GY ++G +L+LFR M+ G N T+A++L+
Sbjct: 362 AREIFNKLRDRDVVAWTAMIVGYVQNGLWNDALELFRLMVNEGPEPNSYTLAAMLSVSSS 421
Query: 232 SARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFD-SMADRNLVCWNA 290
G+ +H ++ + ALI +Y+K + VA+RVFD + +V W +
Sbjct: 422 LTILEHGKQIHASAIKAGESSTPSVTNALIAMYAKTGNINVAKRVFDLPNGKKEIVSWTS 481
Query: 291 MILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQ 350
MI+ HG +E I LF +++ + PD IT++GV+ AC L+ +GRKY+
Sbjct: 482 MIMALAQHGLGKEAINLFERMLS-----VGMKPDHITYVGVLSACTHVGLVEQGRKYYNM 536
Query: 351 MIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRF 410
M + ++I+P +HY CM +LY A L +EA + MP + DN I W SLL+ C+
Sbjct: 537 MTEVHEIEPTLSHYACMIDLYGRAGLLQEAYLFIESMPIEPDN-----IAWGSLLASCKI 591
Query: 411 QGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCR 470
+ + A+ + +DP + Y L NVY+ G+WE+ A+ R+LMK R + + G
Sbjct: 592 HKNADLAKVAAERLLLIDPGNSGAYLALANVYSACGKWENAAQTRKLMKDRGVRKEKGIS 651
Query: 471 LVDLKEVVEKLKVGHFWRGGMKEEVNKMM 499
+ +K V V K+E+ K+M
Sbjct: 652 WIHIKNEVHAFGVEDVIH-PQKDEIYKLM 679
Score = 154 bits (388), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 89/324 (27%), Positives = 163/324 (50%), Gaps = 39/324 (12%)
Query: 57 AVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKN 116
A+I Y+ + D + + +MI P+ +T ++ SCA ++ G H +K
Sbjct: 112 AIIVGYNQFGLFDNAIWMFAKMISERVPPSQFTVSNVLSSCAANQTLDIGRKIHSFVVKL 171
Query: 117 GVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELF 176
G+ +PV SL+NMY G A+ +F +M+ +++ +WN+++S +++SG A F
Sbjct: 172 GLGSCVPVATSLLNMYAKCGDPVIAKVVFDRMTVKNISTWNALISLYMQSGQFELAASQF 231
Query: 177 DIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMM-KSGFRGNDKTMASVLTACGRSARF 235
+ MP+R++VSWN MISGYS+ G +L +F +M+ + + ++ T+AS+L+AC +
Sbjct: 232 EKMPDRDIVSWNSMISGYSQQGYNLEALAIFSKMLNEPSLKPDNFTLASILSACANLEKL 291
Query: 236 NEGRSVHGYTVRTSLKP---------------------------------NIILDTALID 262
N G+ +H Y +R + NII T+L+D
Sbjct: 292 NIGKQIHAYILRAETETSGAVGNALISMYAKSGGVEIARLIVEHNRTSNLNIIAFTSLLD 351
Query: 263 LYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSIS 322
Y+K V+ A+ +F+ + DR++V W AMI+G+ +G + ++LF +VN
Sbjct: 352 GYTKLGNVKPAREIFNKLRDRDVVAWTAMIVGYVQNGLWNDALELFRLMVN-----EGPE 406
Query: 323 PDEITFIGVICACVRAELLTEGRK 346
P+ T ++ +L G++
Sbjct: 407 PNSYTLAAMLSVSSSLTILEHGKQ 430
Score = 130 bits (326), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 92/384 (23%), Positives = 168/384 (43%), Gaps = 43/384 (11%)
Query: 106 GGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVR 165
G H +K G+ + +MN+L+ Y G++ A ++F +M + SWN+++SG+ +
Sbjct: 29 GRSVHCQIIKKGLHLGVYLMNNLMTFYAKTGSLRFAHHVFDEMPLKSTFSWNTLISGYAK 88
Query: 166 SGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASV 225
G+ + L MP+ + VSW +I GY++ G ++ +F +M+ + T+++V
Sbjct: 89 QGNFEVSRRLLYEMPDCDPVSWTAIIVGYNQFGLFDNAIWMFAKMISERVPPSQFTVSNV 148
Query: 226 LTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFD------- 278
L++C + + GR +H + V+ L + + T+L+++Y+KC +A+ VFD
Sbjct: 149 LSSCAANQTLDIGRKIHSFVVKLGLGSCVPVATSLLNMYAKCGDPVIAKVVFDRMTVKNI 208
Query: 279 ------------------------SMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNG 314
M DR++V WN+MI G+ G E + +F+ ++N
Sbjct: 209 STWNALISLYMQSGQFELAASQFEKMPDRDIVSWNSMISGYSQQGYNLEALAIFSKMLNE 268
Query: 315 TVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGA 374
S+ PD T ++ AC E L G++ I Y ++ + N
Sbjct: 269 P----SLKPDNFTLASILSACANLEKLNIGKQ-----IHAYILRAETETSGAVGNALISM 319
Query: 375 ELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSR 434
EI R + E N + I + SLL G V + F + +D
Sbjct: 320 YAKSGGVEIARLIVEHNRTSNLNIIAFTSLLDGYTKLGNVKPAREI---FNKLRDRDVVA 376
Query: 435 YQFLLNVYAVAGQWEDVARVRELM 458
+ ++ Y G W D + LM
Sbjct: 377 WTAMIVGYVQNGLWNDALELFRLM 400
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 54/259 (20%), Positives = 103/259 (39%), Gaps = 34/259 (13%)
Query: 43 VFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGC 102
+F + + A+I Y + + + + + M+ G PNSYT ++ +
Sbjct: 365 IFNKLRDRDVVAWTAMIVGYVQNGLWNDALELFRLMVNEGPEPNSYTLAAMLSVSSSLTI 424
Query: 103 VERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMF-VQMSPRDLISWNSIVS 161
+E G H A+K G V N+LI MY G ++ A+ +F + ++++SW S
Sbjct: 425 LEHGKQIHASAIKAGESSTPSVTNALIAMYAKTGNINVAKRVFDLPNGKKEIVSWTS--- 481
Query: 162 GHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKT 221
MI ++ G ++ LF M+ G + + T
Sbjct: 482 ----------------------------MIMALAQHGLGKEAINLFERMLSVGMKPDHIT 513
Query: 222 MASVLTACGRSARFNEGRSVHGYTVRT-SLKPNIILDTALIDLYSKCQKVEVAQRVFDSM 280
VL+AC +GR + ++P + +IDLY + ++ A +SM
Sbjct: 514 YVGVLSACTHVGLVEQGRKYYNMMTEVHEIEPTLSHYACMIDLYGRAGLLQEAYLFIESM 573
Query: 281 A-DRNLVCWNAMILGHCIH 298
+ + + W +++ IH
Sbjct: 574 PIEPDNIAWGSLLASCKIH 592
>gi|224120114|ref|XP_002318245.1| predicted protein [Populus trichocarpa]
gi|222858918|gb|EEE96465.1| predicted protein [Populus trichocarpa]
Length = 513
Score = 233 bits (594), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 132/430 (30%), Positives = 226/430 (52%), Gaps = 45/430 (10%)
Query: 56 NAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALK 115
VI Y + + D+ V +L+M PN+ TFVS+ +C + G + G HGL+ K
Sbjct: 104 TGVISGYVRAGLFDEAVGLFLRM---DVEPNAATFVSVLVACGRKGYLSVGKGIHGLSFK 160
Query: 116 NGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHEL 175
+ L V N+L++MY V+ G + A ++
Sbjct: 161 SAFGVGLEVSNALMDMY-------------------------------VKCGCLPGAKQV 189
Query: 176 FDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARF 235
FD + E+++VSW +ISG + P +L+LF++M SG + + SVL+AC R
Sbjct: 190 FDELAEKDIVSWTSIISGLVQCNCPKEALELFQDMQSSGIEPDGIILTSVLSACARLGAL 249
Query: 236 NEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGH 295
+ GR VH + R ++K +I + TA++D+Y+KC +E++ ++F+ M +N++ WNA++ G
Sbjct: 250 DYGRWVHEHIDRKAIKWDIQIGTAMVDMYAKCGCIEMSMQIFNGMPHKNVLTWNALLNGL 309
Query: 296 CIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMI-DF 354
+HG + ++LF +V + P+E+TF+ ++ AC L+ EGR+YF M
Sbjct: 310 AMHGHAYKVLELFEEMVR-----VGMRPNEVTFLAILTACCHCGLVNEGRQYFNWMKGQQ 364
Query: 355 YKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAV 414
Y + P HY CM +L A L +EA E+ + MP MS + + +LLS C+ G
Sbjct: 365 YNLPPRLEHYGCMVDLLCRARLLDEALELTKAMP-----MSPDVRIMGALLSACKENGNT 419
Query: 415 AMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDL 474
+ + + FV++D D Y L N++A+ +W+DV R+R LMK++ + + PG +++L
Sbjct: 420 ELPQEILDRFVELDSHDSGVYVLLSNIHAINQRWDDVTRIRRLMKEKGIKKPPGSTVIEL 479
Query: 475 KEVVEKLKVG 484
+ VG
Sbjct: 480 DGKAHEFIVG 489
Score = 148 bits (373), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 107/370 (28%), Positives = 170/370 (45%), Gaps = 46/370 (12%)
Query: 56 NAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALK 115
NA++ Y+ P + Y +++K+GF+P+ +TF ++ SCAK + G HG+ +K
Sbjct: 3 NALVSGYAIGDRPKTAFLVYRRIVKDGFLPDMFTFPAVLKSCAKFVGIGEGRQVHGVIIK 62
Query: 116 NGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHEL 175
G + V NSL++ Y C R GD A +
Sbjct: 63 MGFVCNIYVENSLVHFYSV-----CKR-----------------------FGD---ASRV 91
Query: 176 FDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARF 235
FD M R+VVSW +ISGY ++G ++ LF M N T SVL ACGR
Sbjct: 92 FDEMLVRDVVSWTGVISGYVRAGLFDEAVGLFLRM---DVEPNAATFVSVLVACGRKGYL 148
Query: 236 NEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGH 295
+ G+ +HG + +++ + + AL+D+Y KC + A++VFD +A++++V W ++I G
Sbjct: 149 SVGKGIHGLSFKSAFGVGLEVSNALMDMYVKCGCLPGAKQVFDELAEKDIVSWTSIISGL 208
Query: 296 CIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFY 355
P+E ++LF + I PD I V+ AC R L GR + + ID
Sbjct: 209 VQCNCPKEALELFQDM-----QSSGIEPDGIILTSVLSACARLGALDYGR-WVHEHIDRK 262
Query: 356 KIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVA 415
IK + M ++YA E + +I MP N + W +LL+ G
Sbjct: 263 AIKWDIQIGTAMVDMYAKCGCIEMSMQIFNGMPHKN------VLTWNALLNGLAMHGHAY 316
Query: 416 MVERLAKSFV 425
V L + V
Sbjct: 317 KVLELFEEMV 326
Score = 96.3 bits (238), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 49/159 (30%), Positives = 83/159 (52%), Gaps = 8/159 (5%)
Query: 187 WNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTV 246
+N ++SGY+ P + ++R ++K GF + T +VL +C + EGR VHG +
Sbjct: 2 FNALVSGYAIGDRPKTAFLVYRRIVKDGFLPDMFTFPAVLKSCAKFVGIGEGRQVHGVII 61
Query: 247 RTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIK 306
+ NI ++ +L+ YS C++ A RVFD M R++V W +I G+ G +E +
Sbjct: 62 KMGFVCNIYVENSLVHFYSVCKRFGDASRVFDEMLVRDVVSWTGVISGYVRAGLFDEAVG 121
Query: 307 LFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGR 345
LF + + P+ TF+ V+ AC R L+ G+
Sbjct: 122 LFLRM--------DVEPNAATFVSVLVACGRKGYLSVGK 152
>gi|125564656|gb|EAZ10036.1| hypothetical protein OsI_32340 [Oryza sativa Indica Group]
Length = 644
Score = 233 bits (594), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 130/460 (28%), Positives = 235/460 (51%), Gaps = 15/460 (3%)
Query: 10 HLITSGLFFNNSFWTINLLKHS-ADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSNSCVP 68
H + L F + N L HS A GS + F + + N++I Y+ +
Sbjct: 133 HGVVVKLGFVGQVFVGNALLHSYASAGSLGDSRRFFDEMVDRNVVSWNSMINGYAQAGNT 192
Query: 69 DQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSL 128
+ + M + G + + +T VSL +C+ G +E G + H L G +L + N+L
Sbjct: 193 REACSLFEGMRRQGLLADEFTLVSLLFACSAEGNLEFGKLVHSHLLVRGCRIDLILANAL 252
Query: 129 INMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWN 188
++MYG G + A F M ++ +SW S++ + + AA + F+ +PE++++SWN
Sbjct: 253 VDMYGKCGDLLMAHTCFDMMPFKNAVSWTSMLCALAKRASIDAARDWFEQIPEKSIISWN 312
Query: 189 IMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRT 248
MIS Y + G +L L+ M G ++ T+A+VL+ACG+ G+ +H
Sbjct: 313 AMISCYVQGGRFHEALDLYNRMKLLGLAPDEFTLAAVLSACGQLGDLASGKMIHDCIRDN 372
Query: 249 SLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLF 308
P + L +L+D+Y++C +V+ A +F M +N++ WNA+I +HG+ ++ + F
Sbjct: 373 FHNPGVALFNSLLDMYARCGQVDTAISLFSEMPSKNVISWNAIIGALAMHGRAQDALMFF 432
Query: 309 TALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMA 368
++V+ + PDEITF+ ++ AC LL G+ YF+ M Y +KP HY CM
Sbjct: 433 RSMVS-----DAFPPDEITFVALLSACNHGGLLEAGQYYFQAMRHVYNVKPGVEHYACMV 487
Query: 369 NLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMD 428
+L +A ++++ MP M + ++W +LL CR G + + +++ K ++++
Sbjct: 488 DLLGRGGQLAKAVDLIKDMP-----MRPDVVVWGALLGACRIHGHIQIGKQVIKQLLELE 542
Query: 429 PQDFSRYQFLLNVYAVAGQWEDVARVRELMK----KRRMG 464
+ + N+ QWED+ R+R+LM+ K+ MG
Sbjct: 543 GMSGGLFVLISNMLYETHQWEDMKRLRKLMREWGMKKNMG 582
Score = 145 bits (367), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 108/420 (25%), Positives = 185/420 (44%), Gaps = 65/420 (15%)
Query: 1 MKQLLQIQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIK 60
+ +L Q+ AHL+ G+ S + A G Y +F I +P F N++I+
Sbjct: 25 VHRLNQLHAHLVVHGVDDVTSQILASYCALPAG-GGVWYARQLFDRIPDPDRFVYNSLIR 83
Query: 61 AYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDF 120
AY NS P + + MI+ G +PN +T L +CA+ E + HG+ +K G
Sbjct: 84 AYCNSHCPQEALPLLRGMIRRGILPNEFTLPFLLKACARVQAWEHVMVTHGVVVKLGFVG 143
Query: 121 ELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMP 180
++ V N+L++ Y G++ +R F +M R+++SWNS+++G+ ++G+ A
Sbjct: 144 QVFVGNALLHSYASAGSLGDSRRFFDEMVDRNVVSWNSMINGYAQAGNTREA-------- 195
Query: 181 ERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRS 240
CS LF M + G ++ T+ S+L AC G+
Sbjct: 196 ---------------------CS--LFEGMRRQGLLADEFTLVSLLFACSAEGNLEFGKL 232
Query: 241 VHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGK 300
VH + + + ++IL AL+D+Y KC + +A FD M +N V W +M+ C K
Sbjct: 233 VHSHLLVRGCRIDLILANALVDMYGKCGDLLMAHTCFDMMPFKNAVSWTSML---CALAK 289
Query: 301 --------------PEEGIKLFTALVNGTVAGG---------------SISPDEITFIGV 331
PE+ I + A+++ V GG ++PDE T V
Sbjct: 290 RASIDAARDWFEQIPEKSIISWNAMISCYVQGGRFHEALDLYNRMKLLGLAPDEFTLAAV 349
Query: 332 ICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDN 391
+ AC + L G+ + D + P A + + ++YA + A + +MP N
Sbjct: 350 LSACGQLGDLASGKMIHDCIRDNFH-NPGVALFNSLLDMYARCGQVDTAISLFSEMPSKN 408
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 73/313 (23%), Positives = 126/313 (40%), Gaps = 43/313 (13%)
Query: 7 IQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSNSC 66
+ AH + F N+ ++L A S D F+ I NA+I Y
Sbjct: 263 LMAHTCFDMMPFKNAVSWTSMLCALAKRASIDAARDWFEQIPEKSIISWNAMISCYVQGG 322
Query: 67 VPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMN 126
+ + Y +M G P+ +T ++ +C + G + G M H N + + + N
Sbjct: 323 RFHEALDLYNRMKLLGLAPDEFTLAAVLSACGQLGDLASGKMIHDCIRDNFHNPGVALFN 382
Query: 127 SLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVS 186
SL++MY G +D A ++F +M +++ISWN+I
Sbjct: 383 SLLDMYARCGQVDTAISLFSEMPSKNVISWNAI--------------------------- 415
Query: 187 WNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSV----- 241
I + G +L FR M+ F ++ T ++L+AC G+
Sbjct: 416 ----IGALAMHGRAQDALMFFRSMVSDAFPPDEITFVALLSACNHGGLLEAGQYYFQAMR 471
Query: 242 HGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADR-NLVCWNAMILGHC-IHG 299
H Y V KP + ++DL + ++ A + M R ++V W A+ LG C IHG
Sbjct: 472 HVYNV----KPGVEHYACMVDLLGRGGQLAKAVDLIKDMPMRPDVVVWGAL-LGACRIHG 526
Query: 300 KPEEGIKLFTALV 312
+ G ++ L+
Sbjct: 527 HIQIGKQVIKQLL 539
>gi|356557757|ref|XP_003547177.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
chloroplastic-like [Glycine max]
Length = 1227
Score = 233 bits (594), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 140/460 (30%), Positives = 225/460 (48%), Gaps = 47/460 (10%)
Query: 16 LFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFY 75
+ FNN+ LL + G+ + + F+ + ++I AY + D + +
Sbjct: 689 VMFNNT-----LLDMYSKCGNLNDAIQAFEKMGQKTVVSWTSLIAAYVREGLYDDAIRLF 743
Query: 76 LQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCF 135
+M G P+ Y+ S+ +CA +++G H KN + LPV N+L++MY
Sbjct: 744 YEMESKGVSPDVYSMTSVLHACACGNSLDKGRDVHNYIRKNNMALCLPVSNALMDMYA-- 801
Query: 136 GAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYS 195
+ G M A+ +F +P +++VSWN MI GYS
Sbjct: 802 -----------------------------KCGSMEEAYLVFSQIPVKDIVSWNTMIGGYS 832
Query: 196 KSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNII 255
K+ P +LKLF EM K R + TMA +L ACG A GR +HG +R +
Sbjct: 833 KNSLPNEALKLFAEMQKES-RPDGITMACLLPACGSLAALEIGRGIHGCILRNGYSSELH 891
Query: 256 LDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGT 315
+ ALID+Y KC + A+ +FD + +++L+ W MI G +HG E I F +
Sbjct: 892 VANALIDMYVKCGSLVHARLLFDMIPEKDLITWTVMISGCGMHGLGNEAIATFQKM---R 948
Query: 316 VAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAE 375
+AG I PDEITF ++ AC + LL EG +F MI ++P HY CM +L A
Sbjct: 949 IAG--IKPDEITFTSILYACSHSGLLNEGWGFFNSMISECNMEPKLEHYACMVDLLARTG 1006
Query: 376 LTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRY 435
+A ++ MP D + +W +LL CR V + E++A+ +++P + Y
Sbjct: 1007 NLSKAYNLIETMPIKPD-----ATIWGALLCGCRIHHDVELAEKVAEHVFELEPDNAGYY 1061
Query: 436 QFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLK 475
L N+YA A +WE+V ++RE + KR + + PGC ++++
Sbjct: 1062 VLLANIYAEAEKWEEVKKLRERIGKRGLKKSPGCSWIEVQ 1101
Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 111/462 (24%), Positives = 184/462 (39%), Gaps = 89/462 (19%)
Query: 47 INNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERG 106
+++ F N ++ Y+ + + + +M K G NSYTF + A G V
Sbjct: 513 LSDNKVFLWNLMMSEYAKIGDYRESIYLFKKMQKLGITGNSYTFSCILKCFATLGRVGEC 572
Query: 107 GMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRS 166
HG K G V+NSLI Y G +D A +F ++ RD++SWNS++SG V +
Sbjct: 573 KRIHGCVYKLGFGSYNTVVNSLIATYFKSGEVDSAHKLFDELGDRDVVSWNSMISGCVMN 632
Query: 167 GDMSAAHELFDIMP---------------------------------------ERNVVSW 187
G +A E F M R V+
Sbjct: 633 GFSHSALEFFVQMLILRVGVDLATLVNSVAACANVGSLSLGRALHGQGVKACFSREVMFN 692
Query: 188 NIMISGYSKSGNPGCSL-------------------------------KLFREMMKSGFR 216
N ++ YSK GN ++ +LF EM G
Sbjct: 693 NTLLDMYSKCGNLNDAIQAFEKMGQKTVVSWTSLIAAYVREGLYDDAIRLFYEMESKGVS 752
Query: 217 GNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRV 276
+ +M SVL AC ++GR VH Y + ++ + + AL+D+Y+KC +E A V
Sbjct: 753 PDVYSMTSVLHACACGNSLDKGRDVHNYIRKNNMALCLPVSNALMDMYAKCGSMEEAYLV 812
Query: 277 FDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACV 336
F + +++V WN MI G+ + P E +KLF + + PD IT ++ AC
Sbjct: 813 FSQIPVKDIVSWNTMIGGYSKNSLPNEALKLFAEMQKES------RPDGITMACLLPACG 866
Query: 337 RAELLTEGRKYFRQMI-DFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMS 395
L GR ++ + Y + + A+ + ++Y A + +PE
Sbjct: 867 SLAALEIGRGIHGCILRNGYSSELHVAN--ALIDMYVKCGSLVHARLLFDMIPEK----- 919
Query: 396 FESIMWVSLLSLCRFQG----AVAMVERLAKSFVDMDPQDFS 433
+ I W ++S C G A+A +++ + + D F+
Sbjct: 920 -DLITWTVMISGCGMHGLGNEAIATFQKMRIAGIKPDEITFT 960
Score = 96.3 bits (238), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 69/267 (25%), Positives = 115/267 (43%), Gaps = 37/267 (13%)
Query: 86 NSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMF 145
N+Y+ S+ CA+ C++ G M H + NG+ E + L+ MY GA+ R +F
Sbjct: 452 NAYS--SILQLCAEHKCLQEGKMVHSVISSNGIPIEGVLGAKLVFMYVSCGALREGRRIF 509
Query: 146 VQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLK 205
I+ + V WN+M+S Y+K G+ S+
Sbjct: 510 DH------------------------------ILSDNKVFLWNLMMSEYAKIGDYRESIY 539
Query: 206 LFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYS 265
LF++M K G GN T + +L R E + +HG + + +LI Y
Sbjct: 540 LFKKMQKLGITGNSYTFSCILKCFATLGRVGECKRIHGCVYKLGFGSYNTVVNSLIATYF 599
Query: 266 KCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDE 325
K +V+ A ++FD + DR++V WN+MI G ++G ++ F ++ V D
Sbjct: 600 KSGEVDSAHKLFDELGDRDVVSWNSMISGCVMNGFSHSALEFFVQMLILRVG-----VDL 654
Query: 326 ITFIGVICACVRAELLTEGRKYFRQMI 352
T + + AC L+ GR Q +
Sbjct: 655 ATLVNSVAACANVGSLSLGRALHGQGV 681
>gi|297849216|ref|XP_002892489.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297338331|gb|EFH68748.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 1014
Score = 233 bits (594), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 134/400 (33%), Positives = 204/400 (51%), Gaps = 10/400 (2%)
Query: 70 QGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLI 129
+ + F+ M G + YT+ L SC+ + G HG ++ G V ++
Sbjct: 607 KSLSFFSSMKSRGIWADEYTYAPLLKSCSSLSDLRFGKCVHGEVIRTGFHRLGKVRIGVV 666
Query: 130 NMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNI 189
+Y G M A+ +F +M R+++ WN +V G SGD+ F M ER++VSWN
Sbjct: 667 ELYTSGGRMGDAQKVFDEMPERNVVVWNLMVRGFCDSGDVQRGLSFFKQMSERSIVSWNS 726
Query: 190 MISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTS 249
MIS SK G +L+LF EM+ GF ++ T+ ++L + G+ +H
Sbjct: 727 MISSLSKCGRDREALELFCEMIDQGFDPDEATVVTMLPISASLGVLDTGKWIHSTAESNG 786
Query: 250 L-KPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLF 308
L K I + AL+D Y K +E A +F M RN+V WN MI G ++GK E GI LF
Sbjct: 787 LIKDFITVGNALVDFYCKSGDLEAATAIFRKMQRRNVVSWNTMISGSAVNGKGESGIDLF 846
Query: 309 TALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMA 368
A++ G ++P+E TF+GV+ C + G + F M++ +K++P HY M
Sbjct: 847 DAMIE----EGKVAPNEATFLGVLACCSYTGQVERGEELFGLMMERFKLEPRTEHYGAMV 902
Query: 369 NLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMD 428
+L + + EA E LR MP ++ + MW SLLS CR G V + E A V ++
Sbjct: 903 DLMSRSGRIREAFEFLRNMP-----VNANAAMWGSLLSACRSHGDVKLAELAAMELVKIE 957
Query: 429 PQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPG 468
P + Y L N+YA G+W+DV +VR LMKK + + G
Sbjct: 958 PGNSGNYVLLSNLYAEEGRWQDVEKVRTLMKKNCLRKTTG 997
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 64/271 (23%), Positives = 114/271 (42%), Gaps = 35/271 (12%)
Query: 33 DFGSPDYTVLVFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVS 92
D G + FK ++ N++I + S + + + +MI GF P+ T V+
Sbjct: 702 DSGDVQRGLSFFKQMSERSIVSWNSMISSLSKCGRDREALELFCEMIDQGFDPDEATVVT 761
Query: 93 LFGSCAKTGCVERGGMCHGLALKNGV--DFELPVMNSLINMYGCFGAMDCARNMFVQMSP 150
+ A G ++ G H A NG+ DF + V N+L++ Y G ++ A +F +M
Sbjct: 762 MLPISASLGVLDTGKWIHSTAESNGLIKDF-ITVGNALVDFYCKSGDLEAATAIFRKMQR 820
Query: 151 RDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREM 210
R+++SWN+++SG +G + +LFD M E V+
Sbjct: 821 RNVVSWNTMISGSAVNGKGESGIDLFDAMIEEGKVA------------------------ 856
Query: 211 MKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTV-RTSLKPNIILDTALIDLYSKCQK 269
N+ T VL C + + G + G + R L+P A++DL S+ +
Sbjct: 857 ------PNEATFLGVLACCSYTGQVERGEELFGLMMERFKLEPRTEHYGAMVDLMSRSGR 910
Query: 270 VEVAQRVFDSM-ADRNLVCWNAMILGHCIHG 299
+ A +M + N W +++ HG
Sbjct: 911 IREAFEFLRNMPVNANAAMWGSLLSACRSHG 941
>gi|255568474|ref|XP_002525211.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223535508|gb|EEF37177.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 654
Score = 233 bits (594), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 130/440 (29%), Positives = 222/440 (50%), Gaps = 11/440 (2%)
Query: 38 DYTVLVFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIK-NGFMPNSYTFVSLFGS 96
D + VF + N++I YS + + Y +M+ +GF PN T VS+ +
Sbjct: 178 DLSRKVFDRMTKRDVVSWNSMISGYSQGGLYEDCKTLYREMVDFSGFRPNGVTVVSVLQA 237
Query: 97 CAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISW 156
C +T + G H + N V+ ++ V N+LI +Y G++D AR +F +MS +D +++
Sbjct: 238 CGQTQDLAFGMEVHKFIVDNQVEIDISVCNALIGLYAKCGSLDYARELFDEMSEKDEVTY 297
Query: 157 NSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFR 216
+I+SG + G + + ELF M + + +WN +I+G ++ L L REM GFR
Sbjct: 298 GAIISGLMLHGYVDQSLELFRGMKTQILSTWNAVITGLVQNNRHEGVLDLVREMQALGFR 357
Query: 217 GNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRV 276
N T++SVL+ + G+ +H Y ++ NI + TA+ID+Y+K + AQRV
Sbjct: 358 PNAVTLSSVLSTIAYFSSLKGGKEIHSYAIKIGYHRNIYVATAIIDMYAKSGYLRGAQRV 417
Query: 277 FDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACV 336
FD DR+LV W A+I + +HG + LF ++ I PD +TF V+ AC
Sbjct: 418 FDQSKDRSLVIWTAIISAYAVHGDANLALGLFHEMLK-----QGIQPDPVTFTAVLAACA 472
Query: 337 RAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSF 396
++ + + F M Y I+P HY C+ A EA+E + KMP +
Sbjct: 473 HCGMVDKAWEIFESMFKKYGIQPLVEHYACVVGALGKARRLSEAKEFVSKMP-----IEP 527
Query: 397 ESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRE 456
+ +W +LL V + + + +++P++ Y + N+Y+ AG+W++ VRE
Sbjct: 528 SAKVWGALLHGASISSDVELGKSVCDYLFEIEPENTGNYVIMANLYSQAGRWKEADEVRE 587
Query: 457 LMKKRRMGRMPGCRLVDLKE 476
M K + ++PG ++ E
Sbjct: 588 RMNKVGLQKIPGSSWIETSE 607
Score = 119 bits (298), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 105/428 (24%), Positives = 183/428 (42%), Gaps = 80/428 (18%)
Query: 43 VFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAK--T 100
VF I + TF NA++ +YS + + + + + N+ + L S +
Sbjct: 81 VFDQIPHKNTFSYNAMLISYSLHNRHGDALDLFSSLASSNLV-NNISITCLLKSLSSFTL 139
Query: 101 GCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIV 160
V+ G HG L+ G D ++ V N+LI Y +D +R +F +M+ RD++SWNS
Sbjct: 140 SDVKLGKEVHGFVLRTGFDADVFVENALITYYSKCYDLDLSRKVFDRMTKRDVVSWNS-- 197
Query: 161 SGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMK-SGFRGND 219
MISGYS+ G L+REM+ SGFR N
Sbjct: 198 -----------------------------MISGYSQGGLYEDCKTLYREMVDFSGFRPNG 228
Query: 220 KTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDS 279
T+ SVL ACG++ G VH + V ++ +I + ALI LY+KC ++ A+ +FD
Sbjct: 229 VTVVSVLQACGQTQDLAFGMEVHKFIVDNQVEIDISVCNALIGLYAKCGSLDYARELFDE 288
Query: 280 MADRNLVCWNAMILGHCIHGKPEEGIKLF-----------TALVNGTVAGG--------- 319
M++++ V + A+I G +HG ++ ++LF A++ G V
Sbjct: 289 MSEKDEVTYGAIISGLMLHGYVDQSLELFRGMKTQILSTWNAVITGLVQNNRHEGVLDLV 348
Query: 320 ------SISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMA----N 369
P+ +T V+ L G++ I Y IK + +A +
Sbjct: 349 REMQALGFRPNAVTLSSVLSTIAYFSSLKGGKE-----IHSYAIKIGYHRNIYVATAIID 403
Query: 370 LYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQG----AVAMVERLAKSFV 425
+YA + A+ + + + + ++W +++S G A+ + + K +
Sbjct: 404 MYAKSGYLRGAQRVFDQSKDRS------LVIWTAIISAYAVHGDANLALGLFHEMLKQGI 457
Query: 426 DMDPQDFS 433
DP F+
Sbjct: 458 QPDPVTFT 465
Score = 104 bits (259), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 75/310 (24%), Positives = 153/310 (49%), Gaps = 25/310 (8%)
Query: 93 LFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRD 152
L S A C G + H L + LP+ ++ AR + ++P +
Sbjct: 15 LLTSAAGLDCGIYGHLLHHLT-----ELRLPLQAKQLH----------ARLILFSVTPEN 59
Query: 153 LISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMK 212
++ + +V+ + ++ ++ A +FD +P +N S+N M+ YS G +L LF +
Sbjct: 60 YLA-SKLVALYSKTNHLAFARYVFDQIPHKNTFSYNAMLISYSLHNRHGDALDLFSSLAS 118
Query: 213 SGFRGNDKTMASVLTACGR--SARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKV 270
S N+ ++ +L + + G+ VHG+ +RT ++ ++ ALI YSKC +
Sbjct: 119 SNLV-NNISITCLLKSLSSFTLSDVKLGKEVHGFVLRTGFDADVFVENALITYYSKCYDL 177
Query: 271 EVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIG 330
+++++VFD M R++V WN+MI G+ G E+ L+ +V+ + P+ +T +
Sbjct: 178 DLSRKVFDRMTKRDVVSWNSMISGYSQGGLYEDCKTLYREMVDFS----GFRPNGVTVVS 233
Query: 331 VICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPED 390
V+ AC + + L G + + ++D +++ + + + LYA + A E+ +M E
Sbjct: 234 VLQACGQTQDLAFGMEVHKFIVD-NQVEIDISVCNALIGLYAKCGSLDYARELFDEMSE- 291
Query: 391 NDNMSFESIM 400
D +++ +I+
Sbjct: 292 KDEVTYGAII 301
>gi|449433085|ref|XP_004134328.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g29230-like [Cucumis sativus]
Length = 601
Score = 233 bits (594), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 132/435 (30%), Positives = 226/435 (51%), Gaps = 21/435 (4%)
Query: 52 TFCVNAVIKAYSN--SCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERG-GM 108
F N++I +YS SC ++ M G + ++ S+ AK G E +
Sbjct: 153 VFVPNSLIDSYSKCGSCGISAAKKLFVSM---GARRDVVSWNSMISGLAKGGLYEEARKV 209
Query: 109 CHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGD 168
+ K+G+ + N++++ Y G MD A +F +M R+++SW+++V G+ ++GD
Sbjct: 210 FDEMPEKDGISW-----NTMLDGYVKVGKMDDAFKLFDEMPERNVVSWSTMVLGYCKAGD 264
Query: 169 MSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTA 228
M A LFD MP +N+VSW I++SG+++ G ++ LF +M K+ + ++ T+ S+L A
Sbjct: 265 MEMARMLFDKMPVKNLVSWTIIVSGFAEKGLAREAISLFDQMEKACLKLDNGTVMSILAA 324
Query: 229 CGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCW 288
C S G +H + K + AL+D+Y+KC ++ +A VF+ + ++++V W
Sbjct: 325 CAESGLLGLGEKIHASIKNNNFKCTTEISNALVDMYAKCGRLNIAYDVFNDIKNKDVVSW 384
Query: 289 NAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYF 348
NAM+ G +HG + ++LF + SP+++T IGV+CAC A L+ +G +YF
Sbjct: 385 NAMLQGLAMHGHGVKALELFKRM-----KEEGFSPNKVTMIGVLCACTHAGLIDDGIRYF 439
Query: 349 RQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLC 408
M Y + P HY CM +L EEA ++R MP M+ +I+W +LL C
Sbjct: 440 STMERDYTLVPEVEHYGCMVDLLGRKGRLEEAIRLIRNMP-----MAPNAIIWGTLLGAC 494
Query: 409 RFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPG 468
R AV + + V+++P D + L N+YA AG W VA R M+ + G
Sbjct: 495 RMHNAVELAREVLDHLVELEPTDSGNFSMLSNIYAAAGDWNCVANTRLRMRSIGTKKPSG 554
Query: 469 CRLVDLKEVVEKLKV 483
+++ V + V
Sbjct: 555 ASSIEVNNEVHEFTV 569
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 68/284 (23%), Positives = 119/284 (41%), Gaps = 27/284 (9%)
Query: 152 DLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMM 211
DL ++S M A F+ + NV +N MI +S + P + F M
Sbjct: 51 DLFVVPKLISAFSLCRQMLLATNAFNQVQYPNVHLYNTMIRAHSHNSQPSQAFATFFAMQ 110
Query: 212 KSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQK-- 269
+ G ++ T +L C + SVH + ++ + +LID YSKC
Sbjct: 111 RDGHYADNFTFPFLLKVCTGNVWLPVIESVHAQIEKFGFMSDVFVPNSLIDSYSKCGSCG 170
Query: 270 VEVAQRVFDSM-ADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITF 328
+ A+++F SM A R++V WN+MI G G EE K+F + D I++
Sbjct: 171 ISAAKKLFVSMGARRDVVSWNSMISGLAKGGLYEEARKVFDEMP---------EKDGISW 221
Query: 329 IGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMP 388
++ V+ + + K F +M + N + M Y A E A + KMP
Sbjct: 222 NTMLDGYVKVGKMDDAFKLFDEMPE-----RNVVSWSTMVLGYCKAGDMEMARMLFDKMP 276
Query: 389 EDNDNMSFESIMWVSLLSLCRFQG----AVAMVERLAKSFVDMD 428
N + W ++S +G A+++ +++ K+ + +D
Sbjct: 277 VKN------LVSWTIIVSGFAEKGLAREAISLFDQMEKACLKLD 314
Score = 42.7 bits (99), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 50/247 (20%), Positives = 104/247 (42%), Gaps = 18/247 (7%)
Query: 220 KTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDS 279
K + L+ + N+ + +H ++++L ++ + LI +S C+++ +A F+
Sbjct: 18 KLLEQKLSDLHKCTNLNQVKQLHAQILKSNLHVDLFVVPKLISAFSLCRQMLLATNAFNQ 77
Query: 280 MADRNLVCWNAMILGHCIHGKPEEGIKLFTALV-NGTVAGGSISPDEITFIGVICACVRA 338
+ N+ +N MI H + +P + F A+ +G A D TF ++ C
Sbjct: 78 VQYPNVHLYNTMIRAHSHNSQPSQAFATFFAMQRDGHYA------DNFTFPFLLKVCTGN 131
Query: 339 ELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYA--GAELTEEAEEILRKMPEDNDNMSF 396
L Q+ F + F + + Y+ G+ A+++ M D +S
Sbjct: 132 VWLPVIESVHAQIEKFGFMSDVFVPN-SLIDSYSKCGSCGISAAKKLFVSMGARRDVVS- 189
Query: 397 ESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRE 456
W S++S G + E K F +M +D + +L+ Y G+ +D ++ +
Sbjct: 190 ----WNSMISGLAKGG---LYEEARKVFDEMPEKDGISWNTMLDGYVKVGKMDDAFKLFD 242
Query: 457 LMKKRRM 463
M +R +
Sbjct: 243 EMPERNV 249
>gi|108709982|gb|ABF97777.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
Length = 523
Score = 233 bits (594), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 143/484 (29%), Positives = 225/484 (46%), Gaps = 13/484 (2%)
Query: 1 MKQLLQIQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIK 60
M L Q+ A L+ SGL + + + + D Y + + P F N I+
Sbjct: 48 MAHLRQLHAALVKSGLARDPIAASRAVAFCAGDGRDAAYAARLVRHHPRPNAFMWNTAIR 107
Query: 61 AYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDF 120
A ++ P V ++ M+ + P TF SLF + A+ G G HG+ +K G+
Sbjct: 108 ALADGPGPGAAVALFVDMLGSPTPPERRTFPSLFAAYARLGRAGDGAGLHGMVVKLGLGG 167
Query: 121 ELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMP 180
+ V NS+I MY GA D A + + D ++ NS + R+G + A +FD MP
Sbjct: 168 DAYVRNSVIAMYASRGAADEAIALLARCEAFDAVACNSAIVALARAGRVDEARAVFDGMP 227
Query: 181 ERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRS 240
R V +W+ M+S YS+ +++LF M G N + SVL C +G
Sbjct: 228 ARTVATWSAMVSAYSRDSRCHDAVELFSAMQAEGVEPNANVLVSVLGCCASLGALEQGAW 287
Query: 241 VHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRN---LVCWNAMILGHCI 297
VH Y + + N ++ TAL+D+Y KC + A+ VFD+ R L WN+M+LGH +
Sbjct: 288 VHAYIDKHDVAMNALVVTALVDMYCKCGDIRKAREVFDASRSRGQAKLSSWNSMMLGHAV 347
Query: 298 HGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKI 357
HG+ E LF+ L + PD +TFI ++ A + + E + M + +
Sbjct: 348 HGQWREAAALFSELRP-----HGLRPDNVTFIAILMAYGHSGMADEAKAVLASMASEHGV 402
Query: 358 KPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMV 417
P HY C+ + A A EAE + MP D + +W +LLS CR G
Sbjct: 403 VPGVEHYGCLVDALARAGRLREAEGAIAAMPVAPD-----AAVWGALLSGCRLHGDAEAA 457
Query: 418 ERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLKEV 477
R A+ V DP+D Y + A G+ A VR M++ +G++PGC ++++ V
Sbjct: 458 ARAAREAVRCDPRDSGAYVLAASALARGGEARRGAAVRGRMREEGVGKVPGCSMIEVDGV 517
Query: 478 VEKL 481
V +
Sbjct: 518 VHEF 521
>gi|357130409|ref|XP_003566841.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g13650-like [Brachypodium distachyon]
Length = 815
Score = 233 bits (594), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 127/440 (28%), Positives = 215/440 (48%), Gaps = 42/440 (9%)
Query: 35 GSPDYTVLVFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLF 94
G+ + F I+ P TF N ++ A+ + +QG+ + QM GF N YT+VS+
Sbjct: 402 GAVQDATVTFDLIHEPDTFSWNTILSAFYSGSNCEQGLRIFKQMACEGFSANKYTYVSVL 461
Query: 95 GSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLI 154
C + G H LK+G+ + V L++MY
Sbjct: 462 RCCTSLMNLRFGTQVHACILKSGLQNDTDVSRMLVDMYA--------------------- 500
Query: 155 SWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSG 214
+SG ++A +F+ + ER+ SW +++SGY+K+ ++ FR M++
Sbjct: 501 ----------QSGCFTSACLVFEQLKERDAFSWTVIMSGYAKTEEAEKVVEYFRSMLREN 550
Query: 215 FRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQ 274
R +D T+A L+ C A G +H + +++ +++ AL+D+Y KC + A+
Sbjct: 551 IRPSDATLAVSLSVCSDMASLGSGLQLHSWAIKSGWNSSVV-SGALVDMYVKCGNIADAE 609
Query: 275 RVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICA 334
+F R+ V WN +I G+ HG + + F +V+ PD ITF+GV+ A
Sbjct: 610 MLFHESETRDQVAWNTIICGYSQHGHGYKALDAFKQMVDE-----GKRPDGITFVGVLSA 664
Query: 335 CVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNM 394
C A LL EGRKYF+ + Y I P HY CM ++ + A EAE ++ +MP +
Sbjct: 665 CSHAGLLNEGRKYFKSLSSIYGITPTMEHYACMVDILSKAGRLVEAESLINQMP-----L 719
Query: 395 SFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARV 454
+ +S +W ++L CR + + ER A+ +++P D S L N+YA G+W DV RV
Sbjct: 720 APDSSIWRTILGACRIHRNIEIAERAAERLFELEPHDASSSILLSNIYADLGRWSDVTRV 779
Query: 455 RELMKKRRMGRMPGCRLVDL 474
R ++ + + PGC +++
Sbjct: 780 RNILLDHGVKKEPGCSWIEI 799
Score = 99.4 bits (246), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 111/494 (22%), Positives = 209/494 (42%), Gaps = 84/494 (17%)
Query: 6 QIQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSNS 65
++ A L+ S L ++F +LL G VF + + A+I A++ +
Sbjct: 71 ELHARLLRSALH-PDTFLLDSLLNMYCKCGRLVDARRVFDGMPHRDIVAWTAMISAHTAA 129
Query: 66 CVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALK-NGVDFELPV 124
DQ + + +M + G PN +T S+ +C+ + HG +K NG+D
Sbjct: 130 GDSDQALDMFARMNQEGIAPNGFTLASVLKACSGGSHSKFTHQVHGQVVKLNGLD----- 184
Query: 125 MNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNV 184
D +S+V + G++ AA + +PER+
Sbjct: 185 ---------------------------DPYVGSSLVEAYTSCGELDAAETVLLGLPERSD 217
Query: 185 VSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGY 244
VSWN +++GY++ G+ + + +++ SG + T+ +VL C G+SVH
Sbjct: 218 VSWNALLNGYARHGDYRRVMIIIEKLVASGDEISKYTLPTVLKCCMELGLAKYGQSVHAS 277
Query: 245 TVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEG 304
++ L+ + +L++ L+++YS+C E A VF + + ++V +AMI H E
Sbjct: 278 VIKRGLETDNVLNSCLVEMYSRCLSAEEAYEVFIRIDEPDVVHCSAMISCFDRHDMAWEA 337
Query: 305 IKLFTALVNGTVAGGSISPDEITFIGV-----------ICACVRAELLTEGRKYFRQMID 353
+ LF + +G + P+ F+G+ +C V A ++ G + + D
Sbjct: 338 LDLFVKM-----SGMGVKPNHYIFVGIAGVASRTGDANLCRSVHAYIVKSGFAMLKGVGD 392
Query: 354 -----FYKI--------------KPN-FAHYWCMANLYAGAELTEEAEEILRKMPEDNDN 393
+ K+ +P+ F+ ++ Y+G+ E+ I ++M +
Sbjct: 393 AILNMYVKVGAVQDATVTFDLIHEPDTFSWNTILSAFYSGSN-CEQGLRIFKQMA--CEG 449
Query: 394 MSFESIMWVSLLSLC------RFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQ 447
S +VS+L C RF V + KS + D D SR L+++YA +G
Sbjct: 450 FSANKYTYVSVLRCCTSLMNLRFGTQVHAC--ILKSGLQNDT-DVSR--MLVDMYAQSGC 504
Query: 448 WEDVARVRELMKKR 461
+ V E +K+R
Sbjct: 505 FTSACLVFEQLKER 518
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 72/295 (24%), Positives = 131/295 (44%), Gaps = 37/295 (12%)
Query: 97 CAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISW 156
CA + RG H L++ + + +++SL+NMY
Sbjct: 60 CAVRRTLRRGQELHARLLRSALHPDTFLLDSLLNMY------------------------ 95
Query: 157 NSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFR 216
+ G + A +FD MP R++V+W MIS ++ +G+ +L +F M + G
Sbjct: 96 -------CKCGRLVDARRVFDGMPHRDIVAWTAMISAHTAAGDSDQALDMFARMNQEGIA 148
Query: 217 GNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRV 276
N T+ASVL AC + VHG V+ + + + ++L++ Y+ C +++ A+ V
Sbjct: 149 PNGFTLASVLKACSGGSHSKFTHQVHGQVVKLNGLDDPYVGSSLVEAYTSCGELDAAETV 208
Query: 277 FDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACV 336
+ +R+ V WNA++ G+ HG + + LV +G IS + T V+ C+
Sbjct: 209 LLGLPERSDVSWNALLNGYARHGDYRRVMIIIEKLV---ASGDEIS--KYTLPTVLKCCM 263
Query: 337 RAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDN 391
L G+ +I N + C+ +Y+ EEA E+ ++ E +
Sbjct: 264 ELGLAKYGQSVHASVIKRGLETDNVLNS-CLVEMYSRCLSAEEAYEVFIRIDEPD 317
Score = 89.4 bits (220), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 64/293 (21%), Positives = 122/293 (41%), Gaps = 36/293 (12%)
Query: 43 VFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGC 102
VF I+ P +A+I + + + + +++M G PN Y FV + G ++TG
Sbjct: 309 VFIRIDEPDVVHCSAMISCFDRHDMAWEALDLFVKMSGMGVKPNHYIFVGIAGVASRTGD 368
Query: 103 VERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSG 162
H +K+G V ++++NMY
Sbjct: 369 ANLCRSVHAYIVKSGFAMLKGVGDAILNMY------------------------------ 398
Query: 163 HVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTM 222
V+ G + A FD++ E + SWN ++S + N L++F++M GF N T
Sbjct: 399 -VKVGAVQDATVTFDLIHEPDTFSWNTILSAFYSGSNCEQGLRIFKQMACEGFSANKYTY 457
Query: 223 ASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMAD 282
SVL C G VH +++ L+ + + L+D+Y++ A VF+ + +
Sbjct: 458 VSVLRCCTSLMNLRFGTQVHACILKSGLQNDTDVSRMLVDMYAQSGCFTSACLVFEQLKE 517
Query: 283 RNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICAC 335
R+ W ++ G+ + E+ ++ F +++ +I P + T + C
Sbjct: 518 RDAFSWTVIMSGYAKTEEAEKVVEYFRSMLR-----ENIRPSDATLAVSLSVC 565
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 73/308 (23%), Positives = 130/308 (42%), Gaps = 53/308 (17%)
Query: 6 QIQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSNS 65
Q+ A ++ SGL N++ + L+ A G LVF+ + F ++ Y+ +
Sbjct: 475 QVHACILKSGLQ-NDTDVSRMLVDMYAQSGCFTSACLVFEQLKERDAFSWTVIMSGYAKT 533
Query: 66 CVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVM 125
++ V ++ M++ P+ T C+ + G H A+K+G + + V
Sbjct: 534 EEAEKVVEYFRSMLRENIRPSDATLAVSLSVCSDMASLGSGLQLHSWAIKSGWNSSV-VS 592
Query: 126 NSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVV 185
+L++MY G + A +F + RD ++WN+I
Sbjct: 593 GALVDMYVKCGNIADAEMLFHESETRDQVAWNTI-------------------------- 626
Query: 186 SWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGR------ 239
I GYS+ G+ +L F++M+ G R + T VL+AC + NEGR
Sbjct: 627 -----ICGYSQHGHGYKALDAFKQMVDEGKRPDGITFVGVLSACSHAGLLNEGRKYFKSL 681
Query: 240 -SVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSM---ADRNLVCWNAMILGH 295
S++G T P + ++D+ SK ++ A+ + + M D ++ W ILG
Sbjct: 682 SSIYGIT------PTMEHYACMVDILSKAGRLVEAESLINQMPLAPDSSI--WRT-ILGA 732
Query: 296 C-IHGKPE 302
C IH E
Sbjct: 733 CRIHRNIE 740
Score = 72.4 bits (176), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 46/184 (25%), Positives = 84/184 (45%), Gaps = 12/184 (6%)
Query: 223 ASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMAD 282
A+ L C G+ +H +R++L P+ L +L+++Y KC ++ A+RVFD M
Sbjct: 54 AAALQDCAVRRTLRRGQELHARLLRSALHPDTFLLDSLLNMYCKCGRLVDARRVFDGMPH 113
Query: 283 RNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLT 342
R++V W AMI H G ++ + +F + +A P+ T V+ AC
Sbjct: 114 RDIVAWTAMISAHTAAGDSDQALDMFARMNQEGIA-----PNGFTLASVLKACSGGSHSK 168
Query: 343 EGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWV 402
+ Q++ + + + + EL + AE +L +PE +D + W
Sbjct: 169 FTHQVHGQVVKLNGLDDPYVGSSLVEAYTSCGEL-DAAETVLLGLPERSD------VSWN 221
Query: 403 SLLS 406
+LL+
Sbjct: 222 ALLN 225
Score = 68.9 bits (167), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 82/386 (21%), Positives = 157/386 (40%), Gaps = 74/386 (19%)
Query: 56 NAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALK 115
NA++ Y+ + ++ +++ +G + YT ++ C + G + G H +K
Sbjct: 221 NALLNGYARHGDYRRVMIIIEKLVASGDEISKYTLPTVLKCCMELGLAKYGQSVHASVIK 280
Query: 116 NGVDFELPVMNSLINMYG-CFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHE 174
G++ + + + L+ MY C A + A+E
Sbjct: 281 RGLETDNVLNSCLVEMYSRCLSAEE--------------------------------AYE 308
Query: 175 LFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSAR 234
+F + E +VV + MIS + + +L LF +M G + N + R+
Sbjct: 309 VFIRIDEPDVVHCSAMISCFDRHDMAWEALDLFVKMSGMGVKPNHYIFVGIAGVASRTGD 368
Query: 235 FNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILG 294
N RSVH Y V++ + A++++Y K V+ A FD + + + WN ++
Sbjct: 369 ANLCRSVHAYIVKSGFAMLKGVGDAILNMYVKVGAVQDATVTFDLIHEPDTFSWNTILSA 428
Query: 295 HCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICAC-----------VRAELLTE 343
E+G+++F + A S ++ T++ V+ C V A +L
Sbjct: 429 FYSGSNCEQGLRIFKQM-----ACEGFSANKYTYVSVLRCCTSLMNLRFGTQVHACILKS 483
Query: 344 GRK----YFRQMIDFY--------------KIKPNFAHYWCMANLYAGAELTEEAEEIL- 384
G + R ++D Y ++K A W + + +G TEEAE+++
Sbjct: 484 GLQNDTDVSRMLVDMYAQSGCFTSACLVFEQLKERDAFSWTV--IMSGYAKTEEAEKVVE 541
Query: 385 --RKMPEDNDNMSFESIMWVSLLSLC 408
R M +N S ++ + VS LS+C
Sbjct: 542 YFRSMLRENIRPS-DATLAVS-LSVC 565
>gi|357475445|ref|XP_003608008.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355509063|gb|AES90205.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 1183
Score = 233 bits (594), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 133/419 (31%), Positives = 219/419 (52%), Gaps = 42/419 (10%)
Query: 56 NAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALK 115
+ I AY + + + +M G P+ YT S+ +CA + +++G H +K
Sbjct: 641 TSTIAAYVREGLYSDAIGLFDEMQSKGVRPDIYTVTSIVHACACSSSLDKGRDVHSYVIK 700
Query: 116 NGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHEL 175
NG+ LPV N+LINMY G+++ AR +F +
Sbjct: 701 NGMGSNLPVTNALINMYAKCGSVEEARLVFSK---------------------------- 732
Query: 176 FDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARF 235
+P +++VSWN MI GYS++ P +L+LF +M K F+ +D TMA VL AC A
Sbjct: 733 ---IPVKDIVSWNTMIGGYSQNSLPNEALELFLDMQKQ-FKPDDITMACVLPACAGLAAL 788
Query: 236 NEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGH 295
++GR +HG+ +R ++ + AL+D+Y+KC + +AQ +FD + ++L+ W MI G+
Sbjct: 789 DKGREIHGHILRRGYFSDLHVACALVDMYAKCGLLVLAQLLFDMIPKKDLISWTVMIAGY 848
Query: 296 CIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFY 355
+HG E I F + +AG I PDE +F ++ AC + LL EG K+F M +
Sbjct: 849 GMHGFGNEAISTFNEM---RIAG--IEPDESSFSVILNACSHSGLLNEGWKFFNSMRNEC 903
Query: 356 KIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVA 415
++P HY C+ +L A +A + + MP D + +W LLS CR V
Sbjct: 904 GVEPKLEHYACVVDLLARMGNLSKAYKFIESMPIKPD-----TTIWGVLLSGCRIHHDVK 958
Query: 416 MVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDL 474
+ E++A+ +++P + Y L NVYA A +WE+V ++R+ M+KR + PGC +++
Sbjct: 959 LAEKVAEHIFELEPDNTRYYVVLANVYAEAEKWEEVKKLRKRMQKRGFKQNPGCSWIEV 1017
Score = 130 bits (326), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 96/346 (27%), Positives = 146/346 (42%), Gaps = 37/346 (10%)
Query: 43 VFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGC 102
+F I N F N ++ Y+ + V + +M K G + N YTF + A G
Sbjct: 426 IFDKIMNDKVFLWNLLMSEYAKIGNFRESVSLFKKMQKLGVVGNCYTFTCVLKCFAALGK 485
Query: 103 VERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSG 162
V+ HG LK G V+NSLI Y FG ++
Sbjct: 486 VKECKRVHGYVLKLGFGSNTAVVNSLIAAYFKFGGVE----------------------- 522
Query: 163 HVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTM 222
+AH LFD + E +VVSWN MI+G +G G L++F +M+ G + T+
Sbjct: 523 --------SAHNLFDELSEPDVVSWNSMINGCVVNGFSGNGLEIFIQMLILGVEVDLTTL 574
Query: 223 ASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMAD 282
SVL A + GR++HG+ V+ ++ L+D+YSKC + A VF M D
Sbjct: 575 VSVLVAWANIGNLSLGRALHGFGVKACFSEEVVFSNTLLDMYSKCGNLNGATEVFVKMGD 634
Query: 283 RNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLT 342
+V W + I + G + I LF + + PD T ++ AC + L
Sbjct: 635 TTIVSWTSTIAAYVREGLYSDAIGLFDEM-----QSKGVRPDIYTVTSIVHACACSSSLD 689
Query: 343 EGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMP 388
+GR +I + N + N+YA EEA + K+P
Sbjct: 690 KGRDVHSYVIK-NGMGSNLPVTNALINMYAKCGSVEEARLVFSKIP 734
Score = 128 bits (321), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 91/350 (26%), Positives = 162/350 (46%), Gaps = 46/350 (13%)
Query: 1 MKQLLQIQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIK 60
+K+ ++ +++ G F +N+ +L+ FG + +F ++ P N++I
Sbjct: 486 VKECKRVHGYVLKLG-FGSNTAVVNSLIAAYFKFGGVESAHNLFDELSEPDVVSWNSMI- 543
Query: 61 AYSNSCVPD----QGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKN 116
N CV + G+ ++QM+ G + T VS+ + A G + G HG +K
Sbjct: 544 ---NGCVVNGFSGNGLEIFIQMLILGVEVDLTTLVSVLVAWANIGNLSLGRALHGFGVKA 600
Query: 117 GVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELF 176
E+ N+L++MY + G+++ A E+F
Sbjct: 601 CFSEEVVFSNTLLDMYS-------------------------------KCGNLNGATEVF 629
Query: 177 DIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFN 236
M + +VSW I+ Y + G ++ LF EM G R + T+ S++ AC S+ +
Sbjct: 630 VKMGDTTIVSWTSTIAAYVREGLYSDAIGLFDEMQSKGVRPDIYTVTSIVHACACSSSLD 689
Query: 237 EGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHC 296
+GR VH Y ++ + N+ + ALI++Y+KC VE A+ VF + +++V WN MI G+
Sbjct: 690 KGRDVHSYVIKNGMGSNLPVTNALINMYAKCGSVEEARLVFSKIPVKDIVSWNTMIGGYS 749
Query: 297 IHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRK 346
+ P E ++LF + PD+IT V+ AC L +GR+
Sbjct: 750 QNSLPNEALELFLDMQK------QFKPDDITMACVLPACAGLAALDKGRE 793
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 67/257 (26%), Positives = 114/257 (44%), Gaps = 36/257 (14%)
Query: 89 TFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQM 148
++ S+ CA+ +E G H + + NG+ + + L+ MY
Sbjct: 371 SYCSVLQLCAEKKSLEDGKRVHSVIISNGISIDEALGAKLVFMY---------------- 414
Query: 149 SPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFR 208
V GD+ ++FD + V WN+++S Y+K GN S+ LF+
Sbjct: 415 ---------------VNCGDLVQGRKIFDKIMNDKVFLWNLLMSEYAKIGNFRESVSLFK 459
Query: 209 EMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQ 268
+M K G GN T VL + E + VHGY ++ N + +LI Y K
Sbjct: 460 KMQKLGVVGNCYTFTCVLKCFAALGKVKECKRVHGYVLKLGFGSNTAVVNSLIAAYFKFG 519
Query: 269 KVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITF 328
VE A +FD +++ ++V WN+MI G ++G G+++F ++ + G + D T
Sbjct: 520 GVESAHNLFDELSEPDVVSWNSMINGCVVNGFSGNGLEIFIQML---ILG--VEVDLTTL 574
Query: 329 IGVICACVRAELLTEGR 345
+ V+ A L+ GR
Sbjct: 575 VSVLVAWANIGNLSLGR 591
Score = 85.9 bits (211), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 86/385 (22%), Positives = 157/385 (40%), Gaps = 79/385 (20%)
Query: 6 QIQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSNS 65
+ +++I +G+ N T L+ A GS + LVF I N +I YS +
Sbjct: 693 DVHSYVIKNGMGSNLPV-TNALINMYAKCGSVEEARLVFSKIPVKDIVSWNTMIGGYSQN 751
Query: 66 CVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVM 125
+P++ + +L M K F P+ T + +CA +++G HG L+ G +L V
Sbjct: 752 SLPNEALELFLDMQKQ-FKPDDITMACVLPACAGLAALDKGREIHGHILRRGYFSDLHVA 810
Query: 126 NSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVV 185
+L++MY G + A+ +F + +DLISW
Sbjct: 811 CALVDMYAKCGLLVLAQLLFDMIPKKDLISWT---------------------------- 842
Query: 186 SWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEG-RSVHGY 244
+MI+GY G ++ F EM +G ++ + + +L AC S NEG + +
Sbjct: 843 ---VMIAGYGMHGFGNEAISTFNEMRIAGIEPDESSFSVILNACSHSGLLNEGWKFFNSM 899
Query: 245 TVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADR-NLVCWNAMILGHCIHGKPEE 303
++P + ++DL ++ + A + +SM + + W ++ G IH
Sbjct: 900 RNECGVEPKLEHYACVVDLLARMGNLSKAYKFIESMPIKPDTTIWGVLLSGCRIH----H 955
Query: 304 GIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKP-NFA 362
+KL AE + E ++++P N
Sbjct: 956 DVKL------------------------------AEKVAE---------HIFELEPDNTR 976
Query: 363 HYWCMANLYAGAELTEEAEEILRKM 387
+Y +AN+YA AE EE +++ ++M
Sbjct: 977 YYVVLANVYAEAEKWEEVKKLRKRM 1001
>gi|255572826|ref|XP_002527345.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223533264|gb|EEF35017.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 687
Score = 233 bits (593), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 131/452 (28%), Positives = 235/452 (51%), Gaps = 30/452 (6%)
Query: 32 ADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFV 91
+ GS D ++ VF+ I AVI A + G+ F+ +M+ PN +T
Sbjct: 221 SKLGSLDSSINVFQSIGEKNVISWTAVISACGENGKAAMGLRFFNEMLLEDIKPNEFTLT 280
Query: 92 SLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPR 151
++ C T + G + H L++K G + L + NS++ +Y G MD A+ +F +M
Sbjct: 281 TVLSLCCVTLALVLGRLVHSLSIKLGYQYNLRITNSIMYLYLKCGHMDEAQILFHKMGST 340
Query: 152 DLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMM 211
+L++WN+++SGH ++ D++ D +R+ + +L +F E+
Sbjct: 341 NLVTWNAMISGHAQAMDLAKD----DFSAQRSGIE----------------ALSIFLELN 380
Query: 212 KSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVE 271
++G + + T++SVLT C R + +G +H T+++ ++++ TAL+++YSKC +
Sbjct: 381 RTGKKPDLFTLSSVLTVCSRLSALGQGEQLHAQTIKSGYLSDVVVGTALVNMYSKCGSIG 440
Query: 272 VAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGV 331
A + F M+ R L+ W MI G HG E+ ++LF + +AG + P++ITF+GV
Sbjct: 441 KASKAFVEMSTRTLISWTTMITGLAQHGHSEQALQLFEDM---RLAG--VRPNQITFVGV 495
Query: 332 ICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDN 391
+ AC + ++ E YF M Y+IKP HY C+ ++ +EA +I+ KM D
Sbjct: 496 LAACCHSGMVDEALGYFEMMQKEYRIKPVMDHYGCLIAMFVKLRRLDEAFDIINKM--DF 553
Query: 392 DNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDV 451
+ F +W L++ CR G + A+ + + +D Y LLN+Y A +W+DV
Sbjct: 554 EPSEF---IWSILIAGCRNLGKQELGFYAAEQLLKLKLKDTETYVTLLNMYISAKRWQDV 610
Query: 452 ARVRELMKKRRMGRMPGCRLVDLKEVVEKLKV 483
+RVR+LMK+ ++G+ + +KE + K
Sbjct: 611 SRVRKLMKEEKLGKFNDWSWITIKEKIHSFKT 642
Score = 125 bits (314), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 83/354 (23%), Positives = 153/354 (43%), Gaps = 42/354 (11%)
Query: 7 IQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSNSC 66
I AH+I +G + + T +L+ A G+ +F ++ A++ Y +
Sbjct: 96 IHAHIIKTGTHKDLAVMT-SLVNVYAKCGAMGNARKIFDSLHRRNVVAWTALMTGYVQNS 154
Query: 67 VPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMN 126
P+ + + M+++G +P++YT +C+ ++ G H +K +D++ + N
Sbjct: 155 QPNIAIDVFQDMLESGTLPSNYTLGIALNACSAINSIKLGKQLHAFVIKYKLDYDPSIGN 214
Query: 127 SLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVS 186
+L ++Y G++D + N+F + E+NV+S
Sbjct: 215 ALCSLYSKLGSLDSSINVFQSIG-------------------------------EKNVIS 243
Query: 187 WNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTV 246
W +IS ++G L+ F EM+ + N+ T+ +VL+ C + GR VH ++
Sbjct: 244 WTAVISACGENGKAAMGLRFFNEMLLEDIKPNEFTLTTVLSLCCVTLALVLGRLVHSLSI 303
Query: 247 RTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCI--------H 298
+ + N+ + +++ LY KC ++ AQ +F M NLV WNAMI GH
Sbjct: 304 KLGYQYNLRITNSIMYLYLKCGHMDEAQILFHKMGSTNLVTWNAMISGHAQAMDLAKDDF 363
Query: 299 GKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMI 352
GI+ + + G PD T V+ C R L +G + Q I
Sbjct: 364 SAQRSGIEALSIFLELNRTGK--KPDLFTLSSVLTVCSRLSALGQGEQLHAQTI 415
Score = 110 bits (276), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 74/306 (24%), Positives = 132/306 (43%), Gaps = 45/306 (14%)
Query: 90 FVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMS 149
++ L C K V + H +K G +L VM SL+N+Y
Sbjct: 77 YLPLLQECTKKNSVSEAQVIHAHIIKTGTHKDLAVMTSLVNVYA---------------- 120
Query: 150 PRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFRE 209
+ G M A ++FD + RNVV+W +++GY ++ P ++ +F++
Sbjct: 121 ---------------KCGAMGNARKIFDSLHRRNVVAWTALMTGYVQNSQPNIAIDVFQD 165
Query: 210 MMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQK 269
M++SG ++ T+ L AC G+ +H + ++ L + + AL LYSK
Sbjct: 166 MLESGTLPSNYTLGIALNACSAINSIKLGKQLHAFVIKYKLDYDPSIGNALCSLYSKLGS 225
Query: 270 VEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFI 329
++ + VF S+ ++N++ W A+I +GK G++ F ++ I P+E T
Sbjct: 226 LDSSINVFQSIGEKNVISWTAVISACGENGKAAMGLRFFNEML-----LEDIKPNEFTLT 280
Query: 330 GVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMAN----LYAGAELTEEAEEILR 385
V+ C L GR ++ IK + + + N LY +EA+ +
Sbjct: 281 TVLSLCCVTLALVLGR-----LVHSLSIKLGYQYNLRITNSIMYLYLKCGHMDEAQILFH 335
Query: 386 KMPEDN 391
KM N
Sbjct: 336 KMGSTN 341
Score = 72.4 bits (176), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 50/214 (23%), Positives = 104/214 (48%), Gaps = 20/214 (9%)
Query: 225 VLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRN 284
+L C + +E + +H + ++T ++ + T+L+++Y+KC + A+++FDS+ RN
Sbjct: 80 LLQECTKKNSVSEAQVIHAHIIKTGTHKDLAVMTSLVNVYAKCGAMGNARKIFDSLHRRN 139
Query: 285 LVCWNAMILGHCIHGKPEEGIKLFTALV-NGTVAGGSISPDEITFIGVICACVRAELLTE 343
+V W A++ G+ + +P I +F ++ +GT+ P T + AC +
Sbjct: 140 VVAWTALMTGYVQNSQPNIAIDVFQDMLESGTL------PSNYTLGIALNACSAINSIKL 193
Query: 344 GRKYFRQMIDFYKI--KPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMW 401
G++ +I YK+ P+ + C +LY+ + + + + + E N I W
Sbjct: 194 GKQLHAFVIK-YKLDYDPSIGNALC--SLYSKLGSLDSSINVFQSIGEKN------VISW 244
Query: 402 VSLLSLCRFQGAVAMVERLAKSFV--DMDPQDFS 433
+++S C G AM R + D+ P +F+
Sbjct: 245 TAVISACGENGKAAMGLRFFNEMLLEDIKPNEFT 278
>gi|15222917|ref|NP_175445.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75213175|sp|Q9SX45.1|PPR75_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g50270
gi|5734776|gb|AAD50041.1|AC007980_6 Hypothetical protein [Arabidopsis thaliana]
gi|332194410|gb|AEE32531.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 596
Score = 233 bits (593), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 140/472 (29%), Positives = 232/472 (49%), Gaps = 43/472 (9%)
Query: 5 LQIQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSN 64
Q AH++ GL ++ F +L+ + G D+ +F + A+I +
Sbjct: 123 FQFHAHIVKFGLD-SDPFVRNSLISGYSSSGLFDFASRLFDGAEDKDVVTWTAMIDGFVR 181
Query: 65 SCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNG-VDFELP 123
+ + +V++++M K G N T VS+ + K V G HGL L+ G V ++
Sbjct: 182 NGSASEAMVYFVEMKKTGVAANEMTVVSVLKAAGKVEDVRFGRSVHGLYLETGRVKCDVF 241
Query: 124 VMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERN 183
+ +SL++MYG D A ++FD MP RN
Sbjct: 242 IGSSLVDMYGKCSCYD-------------------------------DAQKVFDEMPSRN 270
Query: 184 VVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHG 243
VV+W +I+GY +S + +F EM+KS N+KT++SVL+AC + GR VH
Sbjct: 271 VVTWTALIAGYVQSRCFDKGMLVFEEMLKSDVAPNEKTLSSVLSACAHVGALHRGRRVHC 330
Query: 244 YTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEE 303
Y ++ S++ N T LIDLY KC +E A VF+ + ++N+ W AMI G HG +
Sbjct: 331 YMIKNSIEINTTAGTTLIDLYVKCGCLEEAILVFERLHEKNVYTWTAMINGFAAHGYARD 390
Query: 304 GIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAH 363
LF +++ V SP+E+TF+ V+ AC L+ EGR+ F M + ++P H
Sbjct: 391 AFDLFYTMLSSHV-----SPNEVTFMAVLSACAHGGLVEEGRRLFLSMKGRFNMEPKADH 445
Query: 364 YWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKS 423
Y CM +L+ L EEA+ ++ +MP + N ++W +L C + + A
Sbjct: 446 YACMVDLFGRKGLLEEAKALIERMPMEPTN-----VVWGALFGSCLLHKDYELGKYAASR 500
Query: 424 FVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLK 475
+ + P RY L N+Y+ + W++VARVR+ MK +++ + PG +++K
Sbjct: 501 VIKLQPSHSGRYTLLANLYSESQNWDEVARVRKQMKDQQVVKSPGFSWIEVK 552
Score = 128 bits (321), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 96/339 (28%), Positives = 155/339 (45%), Gaps = 41/339 (12%)
Query: 56 NAVIKAYSNSCVPDQGVVF--YLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLA 113
+++I +S ++ + F Y M +NG +P+ +TF L + K H
Sbjct: 71 DSLIGHFSGGITLNRRLSFLAYRHMRRNGVIPSRHTFPPLLKAVFKLR-DSNPFQFHAHI 129
Query: 114 LKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAH 173
+K G+D + V NSLI+ Y G D A +F +D+++W +++ G VR+G S A
Sbjct: 130 VKFGLDSDPFVRNSLISGYSSSGLFDFASRLFDGAEDKDVVTWTAMIDGFVRNGSASEA- 188
Query: 174 ELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSA 233
+ F EM K+G N+ T+ SVL A G+
Sbjct: 189 ------------------------------MVYFVEMKKTGVAANEMTVVSVLKAAGKVE 218
Query: 234 RFNEGRSVHGYTVRTS-LKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMI 292
GRSVHG + T +K ++ + ++L+D+Y KC + AQ+VFD M RN+V W A+I
Sbjct: 219 DVRFGRSVHGLYLETGRVKCDVFIGSSLVDMYGKCSCYDDAQKVFDEMPSRNVVTWTALI 278
Query: 293 LGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMI 352
G+ ++G+ +F ++ VA P+E T V+ AC L GR+ MI
Sbjct: 279 AGYVQSRCFDKGMLVFEEMLKSDVA-----PNEKTLSSVLSACAHVGALHRGRRVHCYMI 333
Query: 353 DFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDN 391
I+ N + +LY EEA + ++ E N
Sbjct: 334 K-NSIEINTTAGTTLIDLYVKCGCLEEAILVFERLHEKN 371
>gi|326507168|dbj|BAJ95661.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 580
Score = 233 bits (593), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 141/485 (29%), Positives = 238/485 (49%), Gaps = 47/485 (9%)
Query: 8 QAHLITSGLFFNNSFWTINLLKH---SADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSN 64
Q H ++ L ++ + +N L + S + S +VL T N +I Y +
Sbjct: 114 QLHALSVKLGLSSDTFVLNTLINMYSSCSYPSTARSVLDSAPKGASDTVSWNTIIAGYIH 173
Query: 65 SCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPV 124
+ +P++ + + QM K M + T ++ +CA+T ++ G +CH L + NG + +
Sbjct: 174 AGLPNKALQAFSQMAKGQVMLDDVTLLNALVACARTCMMKVGKLCHALLVTNGFEINCYM 233
Query: 125 MNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNV 184
+SLI+MY + G + A +FD MP+RN
Sbjct: 234 GSSLISMYA-------------------------------KCGQVEDARRIFDGMPDRNA 262
Query: 185 VSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGY 244
V W MISGY++ G ++KLFR+M +G + +D T+++V+++CG+ + GR VH Y
Sbjct: 263 VCWTSMISGYTQLGQSKEAIKLFRDMQIAGVKVDDATISTVVSSCGQMGALDLGRYVHAY 322
Query: 245 TVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEG 304
L +I + +LID+YSKC ++ A +F M R+ W +I+G +G E
Sbjct: 323 CDIHGLGKDISVKNSLIDMYSKCGDIKKAYDIFCGMVKRDNFSWT-VIMGFAANGLSGEA 381
Query: 305 IKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHY 364
+ LF + G + P+EITF+GV+ +C L+ +G ++F +M Y I P HY
Sbjct: 382 LDLFAQMEEE----GGVMPNEITFLGVLTSCSHGGLVEQGYRHFHRMSSIYGIAPRIEHY 437
Query: 365 WCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSF 424
CM +L A+L EAE+ +++MP ++ +++MW SLL CR G V + E +A+
Sbjct: 438 GCMVDLLGRAKLLAEAEQFIKEMP-----IAPDAVMWRSLLFACRTCGEVGLAEYVAERI 492
Query: 425 VDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLKEVVEKLKVG 484
++P L VYA +W D +VR + R + PGC +++ V + G
Sbjct: 493 QVLEPNKCGGDVLLSTVYATTSRWVDANKVRTGIYSGRKTKQPGCSFIEVDGCVHEFFAG 552
Query: 485 ---HF 486
HF
Sbjct: 553 DESHF 557
Score = 133 bits (335), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 95/350 (27%), Positives = 174/350 (49%), Gaps = 43/350 (12%)
Query: 55 VNAVIKAYSNSCVPDQGVVFYLQMIKNGFMP-NSYTFVSLFGSCAKTGCVERGGMCHGLA 113
+++V+++ S+ VP + F + ++G+MP ++Y+ + + A+ V G H L+
Sbjct: 60 LHSVLRSLSSGPVPSLSLSFLSLLRRSGYMPIDNYSLSAALSTAARMPSVVVGAQLHALS 119
Query: 114 LKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPR---DLISWNSIVSGHVRSGDMS 170
+K G+ + V+N+LINMY AR++ + +P+ D +SWN+I++G++ +G
Sbjct: 120 VKLGLSSDTFVLNTLINMYSSCSYPSTARSV-LDSAPKGASDTVSWNTIIAGYIHAG--- 175
Query: 171 AAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACG 230
+P + +L+ F +M K +D T+ + L AC
Sbjct: 176 --------LPNK--------------------ALQAFSQMAKGQVMLDDVTLLNALVACA 207
Query: 231 RSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNA 290
R+ G+ H V + N + ++LI +Y+KC +VE A+R+FD M DRN VCW +
Sbjct: 208 RTCMMKVGKLCHALLVTNGFEINCYMGSSLISMYAKCGQVEDARRIFDGMPDRNAVCWTS 267
Query: 291 MILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQ 350
MI G+ G+ +E IKLF + +AG + D+ T V+ +C + L GR Y
Sbjct: 268 MISGYTQLGQSKEAIKLFRDM---QIAG--VKVDDATISTVVSSCGQMGALDLGR-YVHA 321
Query: 351 MIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIM 400
D + + + + + ++Y+ ++A +I M + DN S+ IM
Sbjct: 322 YCDIHGLGKDISVKNSLIDMYSKCGDIKKAYDIFCGMVK-RDNFSWTVIM 370
>gi|357483151|ref|XP_003611862.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355513197|gb|AES94820.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 663
Score = 233 bits (593), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 126/435 (28%), Positives = 225/435 (51%), Gaps = 13/435 (2%)
Query: 43 VFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGC 102
VF I+ N++I YS ++ V+ + +M + G P+ +T V L K G
Sbjct: 191 VFDDISERTLVSWNSMINGYSKMGRSEEAVLMFREMQEVGLEPDVFTLVGLLSVSTKHGN 250
Query: 103 VERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSG 162
+ G H + G++ + V N+L++MY G + CA+++F QM +D++SW +++
Sbjct: 251 FDLGRFVHLHMVVTGIEIDSIVTNALMDMYAKCGNLKCAKSVFDQMLDKDVVSWTCMINA 310
Query: 163 HVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTM 222
+ G + A E F+ MP +NVVSWN +I + + G ++ LF M SG ND T+
Sbjct: 311 YANHGLIDCALEFFNQMPGKNVVSWNSIIWCHVQEGLYAEAVDLFYRMCDSGVMANDTTL 370
Query: 223 ASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMAD 282
++L++C G+ H Y ++ + L A+ID+Y+KC ++ A VF M +
Sbjct: 371 VAILSSCSHMGDLALGKQAHSYIFDNNITLSATLCNAIIDMYAKCGALQTAMDVFFGMPE 430
Query: 283 RNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLT 342
+N V WN +I +HG +E I++F + + PDEITF G++ AC + L+
Sbjct: 431 KNAVSWNVIIGALALHGYGKEAIEMFEKM-----QASGVCPDEITFTGLLSACSHSGLVD 485
Query: 343 EGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWV 402
G+ YF M + I P+ HY CM +L L EA +++KMP D ++W
Sbjct: 486 TGQHYFEIMNLTFGISPDVEHYACMVDLLGRRGLLGEAISLIKKMPVKPD-----VVVWS 540
Query: 403 SLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRR 462
+LL CR G +A+ +++ K +++ + Y L N+Y+ + +W+D+ + +++ +
Sbjct: 541 ALLGACRTYGNLAIGKQIMKQLLELGRYNSGLYVLLSNMYSESQRWDDMKNIWKILDQNG 600
Query: 463 MGRMPGCRLVDLKEV 477
+ + CR + E+
Sbjct: 601 IKK---CRAISFIEI 612
Score = 152 bits (383), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 115/464 (24%), Positives = 197/464 (42%), Gaps = 71/464 (15%)
Query: 1 MKQLLQIQAHLITSGLFFNNSFWTI-NLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVI 59
+KQL + A +I GL T+ L+ S Y +F I P F N +I
Sbjct: 49 LKQLKHVHAQIILHGL--ATQVLTLGKLVSSSVQLRDLRYAHKLFDQIPQPNKFMFNHLI 106
Query: 60 KAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVD 119
K YSNS P + ++ Y +M+ +G +PN +T + +CA C G H + K G+
Sbjct: 107 KGYSNSSDPIKSLLLYRRMVCDGILPNQFTIPFVLKACAAKSCYWLGVCVHAQSFKLGMG 166
Query: 120 FELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIM 179
V N+++N+Y G + AR +F +S R L+SWNS
Sbjct: 167 SHACVQNAILNIYVACGLITSARRVFDDISERTLVSWNS--------------------- 205
Query: 180 PERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGR 239
MI+GYSK G ++ +FREM + G + T+ +L+ + F+ GR
Sbjct: 206 ----------MINGYSKMGRSEEAVLMFREMQEVGLEPDVFTLVGLLSVSTKHGNFDLGR 255
Query: 240 SVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHG 299
VH + V T ++ + I+ AL+D+Y+KC ++ A+ VFD M D+++V W MI + HG
Sbjct: 256 FVHLHMVVTGIEIDSIVTNALMDMYAKCGNLKCAKSVFDQMLDKDVVSWTCMINAYANHG 315
Query: 300 KPEEGIKLFTALVNGTVAG--------------------------GSISPDEITFIGVIC 333
+ ++ F + V + ++ T + ++
Sbjct: 316 LIDCALEFFNQMPGKNVVSWNSIIWCHVQEGLYAEAVDLFYRMCDSGVMANDTTLVAILS 375
Query: 334 ACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDN 393
+C L G++ + D I + + ++YA + A ++ MPE N
Sbjct: 376 SCSHMGDLALGKQAHSYIFD-NNITLSATLCNAIIDMYAKCGALQTAMDVFFGMPEKN-- 432
Query: 394 MSFESIMWVSLLSLCRFQG----AVAMVERLAKSFVDMDPQDFS 433
++ W ++ G A+ M E++ S V D F+
Sbjct: 433 ----AVSWNVIIGALALHGYGKEAIEMFEKMQASGVCPDEITFT 472
Score = 72.8 bits (177), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 56/244 (22%), Positives = 106/244 (43%), Gaps = 9/244 (3%)
Query: 23 WTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNG 82
WT ++ A+ G D + F + N++I + + + V + +M +G
Sbjct: 304 WTC-MINAYANHGLIDCALEFFNQMPGKNVVSWNSIIWCHVQEGLYAEAVDLFYRMCDSG 362
Query: 83 FMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCAR 142
M N T V++ SC+ G + G H N + + N++I+MY GA+ A
Sbjct: 363 VMANDTTLVAILSSCSHMGDLALGKQAHSYIFDNNITLSATLCNAIIDMYAKCGALQTAM 422
Query: 143 NMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNV----VSWNIMISGYSKSG 198
++F M ++ +SWN I+ G A E+F+ M V +++ ++S S SG
Sbjct: 423 DVFFGMPEKNAVSWNVIIGALALHGYGKEAIEMFEKMQASGVCPDEITFTGLLSACSHSG 482
Query: 199 NPGCSLKLFREM-MKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILD 257
F M + G + + A ++ GR E S+ + +KP++++
Sbjct: 483 LVDTGQHYFEIMNLTFGISPDVEHYACMVDLLGRRGLLGEAISL---IKKMPVKPDVVVW 539
Query: 258 TALI 261
+AL+
Sbjct: 540 SALL 543
>gi|347954508|gb|AEP33754.1| chloroplast biogenesis 19, partial [Nasturtium officinale]
Length = 447
Score = 233 bits (593), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 131/407 (32%), Positives = 212/407 (52%), Gaps = 14/407 (3%)
Query: 82 GFMPNSYTFVSLFGSCAK--TGCVERGGMCHGLALKNGVD-FELPVMNSLINMYGCFGAM 138
G PN TF++L C +G G + HG A K G+D + V +++ MY G
Sbjct: 13 GVEPNHITFIALLSGCGDFPSGSEALGDLLHGYACKLGLDRTHVMVGTAILGMYSKRGRF 72
Query: 139 DCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSG 198
AR +F M ++ ++WN+++ G++RSG ++ A +LFD M R+++SW M++G+ K G
Sbjct: 73 RKARLIFDYMEDKNSVTWNTMIDGYMRSGQVNTAVKLFDEMLNRDLISWTAMVNGFVKKG 132
Query: 199 NPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDT 258
+L FREM SG + + + + L AC + G +H Y + K N+ +
Sbjct: 133 FHEEALSWFREMQISGVKPDYVAIIAALAACTNLGALSFGLWIHRYVMSQDFKNNVRVSN 192
Query: 259 ALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAG 318
+LIDLY +C VE A++VFD M R +V WN++I+G +G E + F +
Sbjct: 193 SLIDLYCRCGCVEFARQVFDKMEKRTVVSWNSVIVGFAANGNAHESLFYFRKMQE----- 247
Query: 319 GSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTE 378
PD +TF G + AC L+ EG +YF+ M Y+I P HY C+ +LY+ A E
Sbjct: 248 EGFKPDAVTFTGALTACSHVGLVEEGLRYFQTMKRDYRISPRIEHYGCIVDLYSRAGRLE 307
Query: 379 EAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQG-AVAMVERLAKSFVDMDPQDFSRYQF 437
+A ++++ MP M ++ SLL+ C+ G + ERL K D++ + S Y
Sbjct: 308 DALKVVQSMP-----MKPNEVVIGSLLAACKNHGNNTLLAERLMKHLSDLNVKSHSNYVI 362
Query: 438 LLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLKEVVEKLKVG 484
L N+YA G+WE +++R MK + + PG +++ E G
Sbjct: 363 LSNMYAADGKWEGASKMRRKMKGLGLKKQPGFSSIEIDECTHVFMAG 409
Score = 78.6 bits (192), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 58/247 (23%), Positives = 101/247 (40%), Gaps = 32/247 (12%)
Query: 35 GSPDYTVLVFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLF 94
G + V +F + N A++ + ++ + ++ +M +G P+ ++
Sbjct: 101 GQVNTAVKLFDEMLNRDLISWTAMVNGFVKKGFHEEALSWFREMQISGVKPDYVAIIAAL 160
Query: 95 GSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLI 154
+C G + G H + + V NSLI++Y G ++ AR +F +M R ++
Sbjct: 161 AACTNLGALSFGLWIHRYVMSQDFKNNVRVSNSLIDLYCRCGCVEFARQVFDKMEKRTVV 220
Query: 155 SWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSG 214
SWNS+ I G++ +GN SL FR+M + G
Sbjct: 221 SWNSV-------------------------------IVGFAANGNAHESLFYFRKMQEEG 249
Query: 215 FRGNDKTMASVLTACGRSARFNEG-RSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVA 273
F+ + T LTAC EG R + P I ++DLYS+ ++E A
Sbjct: 250 FKPDAVTFTGALTACSHVGLVEEGLRYFQTMKRDYRISPRIEHYGCIVDLYSRAGRLEDA 309
Query: 274 QRVFDSM 280
+V SM
Sbjct: 310 LKVVQSM 316
>gi|224119830|ref|XP_002318172.1| predicted protein [Populus trichocarpa]
gi|222858845|gb|EEE96392.1| predicted protein [Populus trichocarpa]
Length = 617
Score = 233 bits (593), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 137/459 (29%), Positives = 234/459 (50%), Gaps = 39/459 (8%)
Query: 26 NLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMP 85
+L+ A G + VF + + N++I YS + + +++M + GF P
Sbjct: 168 SLITMYARCGEMGFARKVFDEMGDRDLVSWNSMISGYSKMGFTKEAIGLFMEMREEGFEP 227
Query: 86 NSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMF 145
+ T VS+ G+C G + G G L+ ++ + ++LI+MYG
Sbjct: 228 DEMTLVSVLGACGDLGDLGLGRWVEGFVLEKKMEVNSYMGSALIDMYG------------ 275
Query: 146 VQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLK 205
+ GD+ +A +FD MP ++VV+WN +I+GY+++G ++
Sbjct: 276 -------------------KCGDLISARRVFDSMPNKDVVTWNAIITGYAQNGASNEAIV 316
Query: 206 LFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYS 265
LF M ++G + TM VL+AC + G+ V + L+ ++ + +ALID+Y+
Sbjct: 317 LFNGMREAGPHPDRVTMIEVLSACSTIGALDLGKWVETHASEKGLQHDVYVASALIDMYA 376
Query: 266 KCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDE 325
KC ++ A RVF+SM +N V WNAMI HG+ +E + LF + + G++ P++
Sbjct: 377 KCGSLDDAVRVFESMPHKNEVSWNAMISALAFHGQAQEALSLFRRM---SKDNGTVQPND 433
Query: 326 ITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILR 385
ITFIGV+ ACV A L+ EGR+ F M + + P HY CM +L A A L EA ++++
Sbjct: 434 ITFIGVLSACVHAGLVDEGRQLFESMNLSFGLVPKVEHYSCMVDLCARAGLLYEAWDLIK 493
Query: 386 KMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVA 445
KMP D I+ SLL C+ + + ER+ + F++M+ + Y +YA
Sbjct: 494 KMPGKPD-----EIVLGSLLGACQRRRNADVGERVIQLFLEMELSNSGNYVISSKIYANM 548
Query: 446 GQWEDVARVRELMKKRRMGRMPGCRLVDLKEVVEKLKVG 484
+W+D A++R LM++ + + PGC +D+ V + G
Sbjct: 549 RRWDDSAKMRVLMRQCGVSKTPGCSWIDIGAHVHEFHAG 587
Score = 174 bits (441), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 126/435 (28%), Positives = 200/435 (45%), Gaps = 53/435 (12%)
Query: 4 LLQIQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAYS 63
L QI A ++ + + N LL D Y LVF + P + N +++ +
Sbjct: 49 LKQIHAQMLINSIPKPNF-----LLSKIIDLKDLAYASLVFNQLTKPNIYAFNVMLRGLA 103
Query: 64 NSCVP-DQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFEL 122
+ D V Y ++ G N++T+ LF +C + G + H L K G+D +
Sbjct: 104 TTWKKYDFCVELYYKLKSLGLKANNFTYPFLFIACGNVRGLVHGKIGHCLVFKAGLDGDE 163
Query: 123 PVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPER 182
V +SLI MY R G+M A ++FD M +R
Sbjct: 164 YVNHSLITMYA-------------------------------RCGEMGFARKVFDEMGDR 192
Query: 183 NVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVH 242
++VSWN MISGYSK G ++ LF EM + GF ++ T+ SVL ACG GR V
Sbjct: 193 DLVSWNSMISGYSKMGFTKEAIGLFMEMREEGFEPDEMTLVSVLGACGDLGDLGLGRWVE 252
Query: 243 GYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPE 302
G+ + ++ N + +ALID+Y KC + A+RVFDSM ++++V WNA+I G+ +G
Sbjct: 253 GFVLEKKMEVNSYMGSALIDMYGKCGDLISARRVFDSMPNKDVVTWNAIITGYAQNGASN 312
Query: 303 EGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFA 362
E I LF NG G PD +T I V+ AC L G K+ ++ +
Sbjct: 313 EAIVLF----NGMREAGP-HPDRVTMIEVLSACSTIGALDLG-KWVETHASEKGLQHDVY 366
Query: 363 HYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQG----AVAMVE 418
+ ++YA ++A + MP N+ + W +++S F G A+++
Sbjct: 367 VASALIDMYAKCGSLDDAVRVFESMPHKNE------VSWNAMISALAFHGQAQEALSLFR 420
Query: 419 RLAKSFVDMDPQDFS 433
R++K + P D +
Sbjct: 421 RMSKDNGTVQPNDIT 435
>gi|255581953|ref|XP_002531775.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223528611|gb|EEF30631.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 498
Score = 233 bits (593), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 130/484 (26%), Positives = 246/484 (50%), Gaps = 10/484 (2%)
Query: 1 MKQLLQIQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIK 60
M ++ Q+ A + SGL ++S LL+ Y +F+ I F N +I+
Sbjct: 1 MHEVRQLHAQFVVSGLLNHHSLCGRRLLESYVTMSEISYARSIFERIPYLDVFVYNTMIR 60
Query: 61 AYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDF 120
P ++ + +++ P++YT+ + +C+ + G H +K G+
Sbjct: 61 GLMLGKRPYDSLLLFNELLLGCLKPDNYTYTFVLKACSNQKALPEGKQVHCQIIKAGISP 120
Query: 121 ELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMP 180
+ +SLI+MY G++ A + + S + ++ NS++SG++ G + A +FD M
Sbjct: 121 NTHIHSSLIHMYTSSGSIVEAECVLREFSEENTLAKNSMISGYLSKGHVDKARAMFDQMK 180
Query: 181 ERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRS 240
++V SW+ +I+G +K+G +L LF +MM S N+ + S+L+AC ++GR
Sbjct: 181 AKDVASWSAIITGCTKNGMHTEALALFEDMMVSHTLPNESALVSLLSACAHLGALHQGRW 240
Query: 241 VHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGK 300
+H Y R +I L TALID+Y+KC ++ + F M R++V W A+I G I+G+
Sbjct: 241 IHAYIDRIGADMSIRLSTALIDMYAKCGDIQSGYKFFRKMPRRDIVTWGAIISGFAIYGQ 300
Query: 301 PEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPN 360
++ +LF ++ I P+ + F+ ++ AC A + EG+ YF QM+ I+P+
Sbjct: 301 AKKCFELFEEML-----ADGIYPNGVIFVAILSACSHAGYVEEGKLYFNQMMVDLGIRPS 355
Query: 361 FAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERL 420
HY CM +L A +EAEE + MPE + S++W S+LS CR +
Sbjct: 356 IEHYGCMVDLLGRAGRLKEAEEFIISMPEKPN-----SVIWGSMLSACRTHNDLNRGSWA 410
Query: 421 AKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLKEVVEK 480
+ ++++P+ RY+ ++ AG+ ++ ++R++++ + M G +++ + +
Sbjct: 411 FRHLIELEPRSGDRYKLAGLMFGNAGEKQEATKIRKMIEDQGMETTSGSSFIEVDGTIHE 470
Query: 481 LKVG 484
VG
Sbjct: 471 FLVG 474
>gi|297735486|emb|CBI17926.3| unnamed protein product [Vitis vinifera]
Length = 602
Score = 233 bits (593), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 128/442 (28%), Positives = 224/442 (50%), Gaps = 10/442 (2%)
Query: 43 VFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGC 102
VF + PG +I+AY P++ + + M + G P+ ++ +C G
Sbjct: 148 VFDEMRQPGLVLWTLIIRAYVCVTFPEKALELFRTMREVGLTPDMVAISTVVSACGLLGD 207
Query: 103 VERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSG 162
+ H K+G++ + V ++LI+ YG G++D A F + ++++ WN+++
Sbjct: 208 LGVAKAMHCFIEKSGIEVDAFVSSTLISTYGECGSLDYAYRFFQETPMKNIVVWNTMIHQ 267
Query: 163 HVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTM 222
V ++ +LF MP+R+VVSWN MI G+++ G +L F EM SG N T+
Sbjct: 268 SVEHNNLELGKQLFQSMPDRDVVSWNSMIGGFARIGQYQEALTWFHEMEFSGVSPNALTL 327
Query: 223 ASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMAD 282
S L+AC + G +H Y + + + LD++LID+YSKC ++ A ++F+
Sbjct: 328 LSTLSACASHGALDTGAWIHAYVDKNDMNRDGSLDSSLIDMYSKCGDIDKAVQIFEESTR 387
Query: 283 RNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLT 342
R+L W +++ G +HG+ E+ + F+ + V PD++T +GV+ AC A LL
Sbjct: 388 RDLFTWTSIVCGLAMHGRGEKALHYFSKMKEAQV-----QPDDVTMVGVLSACAHAGLLD 442
Query: 343 EGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWV 402
+G YF+ M + + P HY CM +L +EA +++ MP M I+W
Sbjct: 443 QGWWYFQSMEKVFGLVPKVEHYGCMVDLLGRMGCLKEAYDLIMGMP-----MEANEIIWG 497
Query: 403 SLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRR 462
+ LS CR V + E A+ + +DP+D L N+YA +W+ +R+ +KK+
Sbjct: 498 AFLSACRVHNNVELGEVAARRLLGLDPRDPWARVMLSNMYAEEAKWDRSMGLRKEIKKKG 557
Query: 463 MGRMPGCRLVDLKEVVEKLKVG 484
+ + PGC +++ V VG
Sbjct: 558 LKKSPGCSSIEVNGSVHGFLVG 579
Score = 88.2 bits (217), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 64/292 (21%), Positives = 122/292 (41%), Gaps = 41/292 (14%)
Query: 69 DQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSL 128
D +++Y+Q ++ G PN +TF+ L + V+ G H ++ G V +L
Sbjct: 73 DPPLLYYMQGLRAGLRPNGHTFMYLLKALVSGQEVKEGEEVHASVVRTGFACSEFVSGAL 132
Query: 129 INMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWN 188
+ Y G + R +F +M L+ W I+ +V PE+
Sbjct: 133 LGFYVACGLVGKGRQVFDEMRQPGLVLWTLIIRAYVCV-----------TFPEK------ 175
Query: 189 IMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRT 248
+L+LFR M + G + +++V++ACG +++H + ++
Sbjct: 176 --------------ALELFRTMREVGLTPDMVAISTVVSACGLLGDLGVAKAMHCFIEKS 221
Query: 249 SLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLF 308
++ + + + LI Y +C ++ A R F +N+V WN MI H E G +LF
Sbjct: 222 GIEVDAFVSSTLISTYGECGSLDYAYRFFQETPMKNIVVWNTMIHQSVEHNNLELGKQLF 281
Query: 309 TALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPN 360
++ + D +++ +I R E +F +M +F + PN
Sbjct: 282 QSMPD---------RDVVSWNSMIGGFARIGQYQEALTWFHEM-EFSGVSPN 323
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 45/157 (28%), Positives = 69/157 (43%), Gaps = 11/157 (7%)
Query: 183 NVVSWNIMISGYSKSG----NPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEG 238
NV WN MI ++G +P L + + +++G R N T +L A EG
Sbjct: 53 NVFVWNTMIRKQVENGLITRDP--PLLYYMQGLRAGLRPNGHTFMYLLKALVSGQEVKEG 110
Query: 239 RSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIH 298
VH VRT + + AL+ Y C V ++VFD M LV W +I +
Sbjct: 111 EEVHASVVRTGFACSEFVSGALLGFYVACGLVGKGRQVFDEMRQPGLVLWTLIIRAYVCV 170
Query: 299 GKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICAC 335
PE+ ++LF T+ ++PD + V+ AC
Sbjct: 171 TFPEKALELFR-----TMREVGLTPDMVAISTVVSAC 202
>gi|218186152|gb|EEC68579.1| hypothetical protein OsI_36919 [Oryza sativa Indica Group]
Length = 586
Score = 233 bits (593), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 132/418 (31%), Positives = 223/418 (53%), Gaps = 12/418 (2%)
Query: 53 FCVNAVIKAYSNSCVPDQGV-VFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHG 111
+ ++++ A S+S P+ + + + + P+ + S+ A+ G H
Sbjct: 46 YIYSSLLTAISHSASPELALPILRCMLSADALHPDHFVISSVASVFARLRSRRLGRQLHA 105
Query: 112 LALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSA 171
+ + + + V +SL++MY G+ D R +F MS ++ + W ++VSG+ +G
Sbjct: 106 HFVASPYNGDDVVKSSLVDMYCKCGSPDDGRKVFDSMSAKNSVVWTALVSGYASNGRSEE 165
Query: 172 AHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDK-TMASVLTACG 230
A +LF MP RN+ +W +ISG +G +++LF EM + G R +D ++ V+ A
Sbjct: 166 ALQLFRSMPGRNLFAWTALISGLVNTGESVGAVELFVEMRRDGVRIDDAFVLSIVIGASA 225
Query: 231 RSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNA 290
A F GR +HG +R N+I+ ALID+YSKC + A+ VF+ + R+++ W
Sbjct: 226 DLAAFVLGRQLHGSAMRLGFLSNMIVGNALIDMYSKCSDILSAREVFEGITFRDVISWTT 285
Query: 291 MILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQ 350
M++G HG+ EE + L+ +V +AG P+E+TF+G+I AC A L+ +GR+ F
Sbjct: 286 MVVGEAQHGRAEEALALYDRMV---LAGA--KPNEVTFVGLIYACSHAGLVQKGRQLFES 340
Query: 351 MIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRF 410
M + Y I P HY C +L + + EAEE++ MP + D + W +LLS C
Sbjct: 341 MKNEYGITPRLQHYTCYLDLLSRSGHLLEAEELMTTMPYEPDEAT-----WGALLSACTK 395
Query: 411 QGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPG 468
M R++ +++ P+D S Y L NVYAV G+W+ VA+VR+ M + + PG
Sbjct: 396 YKDAEMCIRISDKLLELRPKDSSTYILLSNVYAVNGKWDSVAKVRKCMIGLEIRKEPG 453
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 49/174 (28%), Positives = 93/174 (53%), Gaps = 12/174 (6%)
Query: 158 SIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRG 217
++VS + +S + A LFD P R++ ++ +++ S S +P +L + R M+ +
Sbjct: 19 ALVSAYAKSRLLPDALHLFDETPRRDIYIYSSLLTAISHSASPELALPILRCMLSADALH 78
Query: 218 NDK-TMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRV 276
D ++SV + R GR +H + V + + ++ ++L+D+Y KC + ++V
Sbjct: 79 PDHFVISSVASVFARLRSRRLGRQLHAHFVASPYNGDDVVKSSLVDMYCKCGSPDDGRKV 138
Query: 277 FDSMADRNLVCWNAMILGHCIHGKPEEGIKLF-----------TALVNGTVAGG 319
FDSM+ +N V W A++ G+ +G+ EE ++LF TAL++G V G
Sbjct: 139 FDSMSAKNSVVWTALVSGYASNGRSEEALQLFRSMPGRNLFAWTALISGLVNTG 192
>gi|449461643|ref|XP_004148551.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g36730-like [Cucumis sativus]
Length = 516
Score = 232 bits (592), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 148/488 (30%), Positives = 236/488 (48%), Gaps = 48/488 (9%)
Query: 3 QLLQIQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTV---LVFKCINNPGTFCVNAVI 59
L +I A ++ SGL N+SF+T LL+ +A S + + L+F C + T N +I
Sbjct: 45 HLFEIHAQILVSGLQ-NDSFFTTELLRVAALSPSRNLSYGCSLLFHCHFHSATMPWNFII 103
Query: 60 KAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVD 119
+ YS+S P + + + +M + G PN+ TF L +CA ++ G H +A+K G+D
Sbjct: 104 RGYSSSDSPQEAISLFGEMRRRGVRPNNLTFPFLLKACATLATLQEGKQFHAIAIKCGLD 163
Query: 120 FELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIM 179
++ V N+LI YG M AR +F +M+ R L+SWN++++ V + A
Sbjct: 164 LDVYVRNTLIYFYGSCKRMSGARKVFDEMTERTLVSWNAVITACVENFCFDEA------- 216
Query: 180 PERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGR 239
+ F +M GF ++ TM +L+AC + GR
Sbjct: 217 ------------------------IDYFLKMGNHGFEPDETTMVVILSACAELGNLSLGR 252
Query: 240 SVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHG 299
VH V + N+ L TA +D+Y+K V A+ VF+ + +++ W+AMILG HG
Sbjct: 253 WVHSQVVGRGMVLNVQLGTAFVDMYAKSGDVGCARHVFNCLKQKSVWTWSAMILGLAQHG 312
Query: 300 KPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKP 359
E I+LFT +++ I P+ +TFIGV+CAC A L+ + YF M Y IKP
Sbjct: 313 FANEAIELFTNMMS-----SPIVPNHVTFIGVLCACSHAGLVDKSYHYFNLMERVYGIKP 367
Query: 360 NFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCR---FQGAVAM 416
HY M ++ A +EA E++ MP + D I+W +LLS C G +
Sbjct: 368 MMIHYGSMVDVLGRAGQVKEAYELIMSMPVEPD-----PIVWRTLLSACSGRDVNGGAEV 422
Query: 417 VERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLKE 476
E K ++++P+ + N +A G W+ A R MK R + +M G ++L
Sbjct: 423 AEEARKRLLELEPKRGGNVVMVANKFAELGMWKQAADYRRTMKDRGIKKMAGESCIELGG 482
Query: 477 VVEKLKVG 484
+ K G
Sbjct: 483 SLRKFFSG 490
>gi|359491499|ref|XP_003634283.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g02750-like [Vitis vinifera]
Length = 766
Score = 232 bits (592), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 126/398 (31%), Positives = 213/398 (53%), Gaps = 16/398 (4%)
Query: 88 YTFVSLFGSCAKTGCVERGG-MCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFV 146
+T+ ++ + G ++ + G+ KN V + N++I Y MD AR +F
Sbjct: 267 FTWTAMVSGYVQNGMLDEARRVFDGMPEKNSVSW-----NAIIAGYVQCKRMDQARELFE 321
Query: 147 QMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKL 206
M +++ SWN++++G+ ++GD++ A FD MP+R+ +SW +I+GY++SG +L L
Sbjct: 322 AMPCQNVSSWNTMITGYAQNGDIAQARNFFDRMPQRDSISWAAIIAGYAQSGYGEEALHL 381
Query: 207 FREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSK 266
F EM + G R N T S L+ C A G+ VHG V+ L+ + AL+ +Y K
Sbjct: 382 FVEMKRDGERLNRSTFTSTLSTCAEIAALELGKQVHGRVVKAGLESGCYVGNALLVMYCK 441
Query: 267 CQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEI 326
C ++ A VF+ + ++ +V WN MI G+ HG +E + LF ++ I PD++
Sbjct: 442 CGNIDDAYIVFEGIEEKEVVSWNTMIAGYARHGFGKEALMLFESM-----KKTGILPDDV 496
Query: 327 TFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRK 386
T +GV+ AC L+ +G +YF M Y I N HY CM +L A ++A+ +++
Sbjct: 497 TMVGVLSACSHTGLVDKGTEYFYSMTQDYGITANSKHYTCMIDLLGRAGRLDDAQNLMKN 556
Query: 387 MPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAG 446
MP + D + W +LL R G + E+ AK +M+P + Y L N+YA +G
Sbjct: 557 MPFEPD-----AATWGALLGASRIHGNTELGEKAAKMIFEMEPDNSGMYVLLSNLYAASG 611
Query: 447 QWEDVARVRELMKKRRMGRMPGCRLVDLKEVVEKLKVG 484
+W DV R+R M+ R + ++PG V+++ + VG
Sbjct: 612 RWGDVGRMRLRMRDRGVKKVPGYSWVEVQNKIHTFTVG 649
Score = 111 bits (277), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 90/321 (28%), Positives = 153/321 (47%), Gaps = 33/321 (10%)
Query: 141 ARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNP 200
AR +F +M RDL+SWN ++SG VR ++ AA LFD MPER+VVSWN M+SGY+++G
Sbjct: 99 ARQLFEKMPTRDLVSWNVMISGCVRYRNLRAARLLFDQMPERDVVSWNAMLSGYAQNGYV 158
Query: 201 GCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTAL 260
+ ++F EM N + +L A ++ R + R + + +I +
Sbjct: 159 KEAKEIFDEMPCK----NSISWNGMLAAYVQNGRIEDARRL----FESKADWELISWNCM 210
Query: 261 IDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGS 320
+ Y K ++ A+ +FD M +R+ V WN MI G+ +G+ E +LF S
Sbjct: 211 MGGYVKRNRLVDARGIFDRMPERDEVSWNTMISGYAQNGELLEAQRLFEE---------S 261
Query: 321 ISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEA 380
D T+ ++ V+ +L E R+ F M + + N + Y + ++A
Sbjct: 262 PVRDVFTWTAMVSGYVQNGMLDEARRVFDGMPEKNSVSWN-----AIIAGYVQCKRMDQA 316
Query: 381 EEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQ-DFSRYQFLL 439
E+ MP N + W ++++ G +A A++F D PQ D + ++
Sbjct: 317 RELFEAMPCQNVS------SWNTMITGYAQNGDIAQ----ARNFFDRMPQRDSISWAAII 366
Query: 440 NVYAVAGQWEDVARVRELMKK 460
YA +G E+ + MK+
Sbjct: 367 AGYAQSGYGEEALHLFVEMKR 387
Score = 93.6 bits (231), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 65/252 (25%), Positives = 116/252 (46%), Gaps = 33/252 (13%)
Query: 57 AVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKN 116
A+I Y+ S ++ + +++M ++G N TF S +CA+ +E G HG +K
Sbjct: 364 AIIAGYAQSGYGEEALHLFVEMKRDGERLNRSTFTSTLSTCAEIAALELGKQVHGRVVKA 423
Query: 117 GVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELF 176
G++ V N+L+ MY G +D A +F + ++++SWN++++G+ R
Sbjct: 424 GLESGCYVGNALLVMYCKCGNIDDAYIVFEGIEEKEVVSWNTMIAGYAR----------- 472
Query: 177 DIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFN 236
G+ K +L LF M K+G +D TM VL+AC + +
Sbjct: 473 ---------------HGFGKE-----ALMLFESMKKTGILPDDVTMVGVLSACSHTGLVD 512
Query: 237 EGRS-VHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMA-DRNLVCWNAMILG 294
+G + T + N T +IDL + +++ AQ + +M + + W A++
Sbjct: 513 KGTEYFYSMTQDYGITANSKHYTCMIDLLGRAGRLDDAQNLMKNMPFEPDAATWGALLGA 572
Query: 295 HCIHGKPEEGIK 306
IHG E G K
Sbjct: 573 SRIHGNTELGEK 584
Score = 90.9 bits (224), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 65/238 (27%), Positives = 118/238 (49%), Gaps = 26/238 (10%)
Query: 121 ELPVMNS-----LINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHEL 175
E+P NS ++ Y G ++ AR +F + +LISWN ++ G+V+ + A +
Sbjct: 167 EMPCKNSISWNGMLAAYVQNGRIEDARRLFESKADWELISWNCMMGGYVKRNRLVDARGI 226
Query: 176 FDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREM-MKSGFRGNDKTMASVLTACGRSAR 234
FD MPER+ VSWN MISGY+++G + +LF E ++ F T ++++ ++
Sbjct: 227 FDRMPERDEVSWNTMISGYAQNGELLEAQRLFEESPVRDVF-----TWTAMVSGYVQNGM 281
Query: 235 FNEGRSV-HGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMIL 293
+E R V G + S+ N A+I Y +C++++ A+ +F++M +N+ WN MI
Sbjct: 282 LDEARRVFDGMPEKNSVSWN-----AIIAGYVQCKRMDQARELFEAMPCQNVSSWNTMIT 336
Query: 294 GHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQM 351
G+ +G + F + D I++ +I ++ E F +M
Sbjct: 337 GYAQNGDIAQARNFFDRMPQ---------RDSISWAAIIAGYAQSGYGEEALHLFVEM 385
Score = 85.5 bits (210), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 69/296 (23%), Positives = 134/296 (45%), Gaps = 33/296 (11%)
Query: 67 VPDQGVVFYLQMI----KNGF----------MP--NSYTFVSLFGSCAKTGCVERGGMCH 110
+P++ VV + M+ +NG+ MP NS ++ + + + G +E
Sbjct: 137 MPERDVVSWNAMLSGYAQNGYVKEAKEIFDEMPCKNSISWNGMLAAYVQNGRIEDARRL- 195
Query: 111 GLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMS 170
++ D+EL N ++ Y + AR +F +M RD +SWN+++SG+ ++G++
Sbjct: 196 ---FESKADWELISWNCMMGGYVKRNRLVDARGIFDRMPERDEVSWNTMISGYAQNGELL 252
Query: 171 AAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACG 230
A LF+ P R+V +W M+SGY ++G + ++F M + N + +++
Sbjct: 253 EAQRLFEESPVRDVFTWTAMVSGYVQNGMLDEARRVFDGMPEK----NSVSWNAIIAGYV 308
Query: 231 RSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNA 290
+ R ++ R + N+ +I Y++ + A+ FD M R+ + W A
Sbjct: 309 QCKRMDQAREL----FEAMPCQNVSSWNTMITGYAQNGDIAQARNFFDRMPQRDSISWAA 364
Query: 291 MILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRK 346
+I G+ G EE + LF + G + + TF + C L G++
Sbjct: 365 IIAGYAQSGYGEEALHLFVEMKRD---GERL--NRSTFTSTLSTCAEIAALELGKQ 415
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/189 (22%), Positives = 85/189 (44%), Gaps = 9/189 (4%)
Query: 35 GSPDYTVLVFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLF 94
G+ D +VF+ I N +I Y+ + ++ + M K G +P+ T V +
Sbjct: 443 GNIDDAYIVFEGIEEKEVVSWNTMIAGYARHGFGKEALMLFESMKKTGILPDDVTMVGVL 502
Query: 95 GSCAKTGCVERGG-MCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMS-PRD 152
+C+ TG V++G + + G+ +I++ G G +D A+N+ M D
Sbjct: 503 SACSHTGLVDKGTEYFYSMTQDYGITANSKHYTCMIDLLGRAGRLDDAQNLMKNMPFEPD 562
Query: 153 LISWNSI-----VSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLF 207
+W ++ + G+ G+ AA +F++ P+ N + ++ + Y+ SG G ++
Sbjct: 563 AATWGALLGASRIHGNTELGE-KAAKMIFEMEPD-NSGMYVLLSNLYAASGRWGDVGRMR 620
Query: 208 REMMKSGFR 216
M G +
Sbjct: 621 LRMRDRGVK 629
>gi|356554981|ref|XP_003545819.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g27110-like [Glycine max]
Length = 705
Score = 232 bits (592), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 140/474 (29%), Positives = 228/474 (48%), Gaps = 41/474 (8%)
Query: 5 LQIQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSN 64
++I LI SG F +SF + L+ G + + +F+ + N++I Y
Sbjct: 227 MEIHEELINSG-FLLDSFISSALVDMYGKCGHLEMAIEIFEQMPKKTVVAWNSMISGYGL 285
Query: 65 SCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPV 124
+ + +M G P T SL C+++ + G HG ++N + ++ V
Sbjct: 286 KGDIISCIQLFKRMYNEGVKPTLTTLSSLIMVCSRSARLLEGKFVHGYTIRNRIQPDVFV 345
Query: 125 MNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNV 184
+SL+++Y + G + A ++F ++P+ V
Sbjct: 346 NSSLMDLY-------------------------------FKCGKVELAEKIFKLIPKSKV 374
Query: 185 VSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGY 244
VSWN+MISGY G +L LF EM KS + T SVLTAC + A +G+ +H
Sbjct: 375 VSWNVMISGYVAEGKLFEALGLFSEMRKSYVESDAITFTSVLTACSQLAALEKGKEIHNL 434
Query: 245 TVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEG 304
+ L N ++ AL+D+Y+KC V+ A VF + R+LV W +MI + HG
Sbjct: 435 IIEKKLDNNEVVMGALLDMYAKCGAVDEAFSVFKCLPKRDLVSWTSMITAYGSHGHAYGA 494
Query: 305 IKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHY 364
++LF ++ V PD + F+ ++ AC A L+ EG YF QMI+ Y I P HY
Sbjct: 495 LELFAEMLQSNV-----KPDRVAFLAILSACGHAGLVDEGCYYFNQMINVYGIIPRVEHY 549
Query: 365 WCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSF 424
C+ +L A EA EIL++ PE D++ S +L S CR + + +A++
Sbjct: 550 SCLIDLLGRAGRLHEAYEILQQNPEIRDDVELLS----TLFSACRLHRNIDLGAEIARTL 605
Query: 425 VDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLKEVV 478
+D DP D S Y L N+YA A +W++V VR MK+ + + PGC +++ + +
Sbjct: 606 IDKDPDDSSTYILLSNMYASAHKWDEVRVVRSKMKELGLKKNPGCSWIEINQKI 659
Score = 169 bits (429), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 111/379 (29%), Positives = 186/379 (49%), Gaps = 39/379 (10%)
Query: 54 CVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLA 113
C N VI Y S + ++ M + GF PNS T + SCA+ + RG H
Sbjct: 174 CWNTVISCYYQSGNFKDALEYFGLMRRFGFEPNSVTITTAISSCARLLDLNRGMEIHEEL 233
Query: 114 LKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAH 173
+ +G + + ++L++MYG + G + A
Sbjct: 234 INSGFLLDSFISSALVDMYG-------------------------------KCGHLEMAI 262
Query: 174 ELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSA 233
E+F+ MP++ VV+WN MISGY G+ ++LF+ M G + T++S++ C RSA
Sbjct: 263 EIFEQMPKKTVVAWNSMISGYGLKGDIISCIQLFKRMYNEGVKPTLTTLSSLIMVCSRSA 322
Query: 234 RFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMIL 293
R EG+ VHGYT+R ++P++ ++++L+DLY KC KVE+A+++F + +V WN MI
Sbjct: 323 RLLEGKFVHGYTIRNRIQPDVFVNSSLMDLYFKCGKVELAEKIFKLIPKSKVVSWNVMIS 382
Query: 294 GHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMID 353
G+ GK E + LF+ + V D ITF V+ AC + L +G++ +I+
Sbjct: 383 GYVAEGKLFEALGLFSEMRKSYV-----ESDAITFTSVLTACSQLAALEKGKEIHNLIIE 437
Query: 354 FYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGA 413
K+ N + ++YA +EA + + +P+ D +S+ S M + S GA
Sbjct: 438 -KKLDNNEVVMGALLDMYAKCGAVDEAFSVFKCLPK-RDLVSWTS-MITAYGSHGHAYGA 494
Query: 414 VAMVERLAKSFVDMDPQDF 432
+ + + +S V D F
Sbjct: 495 LELFAEMLQSNVKPDRVAF 513
Score = 144 bits (362), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 124/515 (24%), Positives = 226/515 (43%), Gaps = 62/515 (12%)
Query: 1 MKQLLQIQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCV-NAVI 59
+KQ I ++T GL N+ F L+ D+ VF + NP + N ++
Sbjct: 19 LKQGKLIHQKVVTLGLQ-NDIFLCKTLINQYLSCHLYDHAKCVFDNMENPCEISLWNGLM 77
Query: 60 KAYSNSCVPDQGVVFYLQMIKNGFM-PNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGV 118
Y+ + + + + + +++ ++ P+SYT+ S+F +C G M H +K G+
Sbjct: 78 AGYTKNYMYVEALELFEKLLHYPYLKPDSYTYPSVFKACGGLHRYVLGKMIHTCLIKTGL 137
Query: 119 DFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDI 178
++ V +SL+ MYG A + A W LF+
Sbjct: 138 MMDIVVGSSLVGMYGKCNAFEKA-------------IW------------------LFNE 166
Query: 179 MPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEG 238
MPE++V WN +IS Y +SGN +L+ F M + GF N T+ + +++C R N G
Sbjct: 167 MPEKDVACWNTVISCYYQSGNFKDALEYFGLMRRFGFEPNSVTITTAISSCARLLDLNRG 226
Query: 239 RSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIH 298
+H + + + + +AL+D+Y KC +E+A +F+ M + +V WN+MI G+ +
Sbjct: 227 MEIHEELINSGFLLDSFISSALVDMYGKCGHLEMAIEIFEQMPKKTVVAWNSMISGYGLK 286
Query: 299 GKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIK 358
G I+LF + N V P T +I C R+ L EG K+ +I+
Sbjct: 287 GDIISCIQLFKRMYNEGV-----KPTLTTLSSLIMVCSRSARLLEG-KFVHGYTIRNRIQ 340
Query: 359 PNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQG----AV 414
P+ + +LY E AE+I + +P+ + + W ++S +G A+
Sbjct: 341 PDVFVNSSLMDLYFKCGKVELAEKIFKLIPKS------KVVSWNVMISGYVAEGKLFEAL 394
Query: 415 AMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDL 474
+ + KS+V+ D F+ +L + E + L+ ++++ D
Sbjct: 395 GLFSEMRKSYVESDAITFTS---VLTACSQLAALEKGKEIHNLIIEKKL---------DN 442
Query: 475 KEVVEKLKVGHFWRGGMKEEVNKMMECRQSRSLAT 509
EVV + + + G +E + +C R L +
Sbjct: 443 NEVVMGALLDMYAKCGAVDEAFSVFKCLPKRDLVS 477
>gi|356524187|ref|XP_003530713.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g27110-like [Glycine max]
Length = 705
Score = 232 bits (592), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 139/474 (29%), Positives = 229/474 (48%), Gaps = 41/474 (8%)
Query: 5 LQIQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSN 64
++I LI SG F +SF + L+ G + + VF+ + N++I Y
Sbjct: 227 MEIHEELINSG-FLLDSFISSALVDMYGKCGHLEMAIEVFEQMPKKTVVAWNSMISGYGL 285
Query: 65 SCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPV 124
+ + +M G P T SL C+++ + G HG ++N + ++ +
Sbjct: 286 KGDSISCIQLFKRMYNEGVKPTLTTLSSLIMVCSRSARLLEGKFVHGYTIRNRIQSDVFI 345
Query: 125 MNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNV 184
+SL+++Y + G + A +F ++P+ V
Sbjct: 346 NSSLMDLY-------------------------------FKCGKVELAENIFKLIPKSKV 374
Query: 185 VSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGY 244
VSWN+MISGY G +L LF EM KS + T SVLTAC + A +G +H
Sbjct: 375 VSWNVMISGYVAEGKLFEALGLFSEMRKSYVEPDAITFTSVLTACSQLAALEKGEEIHNL 434
Query: 245 TVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEG 304
+ L N ++ AL+D+Y+KC V+ A VF + R+LV W +MI + HG+
Sbjct: 435 IIEKKLDNNEVVMGALLDMYAKCGAVDEAFSVFKCLPKRDLVSWTSMITAYGSHGQAYVA 494
Query: 305 IKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHY 364
++LF ++ ++ PD +TF+ ++ AC A L+ EG YF QM++ Y I P HY
Sbjct: 495 LELFAEMLQ-----SNMKPDRVTFLAILSACGHAGLVDEGCYYFNQMVNVYGIIPRVEHY 549
Query: 365 WCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSF 424
C+ +L A EA EIL++ PE D++ S +L S CR + + +A++
Sbjct: 550 SCLIDLLGRAGRLHEAYEILQQNPEIRDDVELLS----TLFSACRLHRNIDLGAEIARTL 605
Query: 425 VDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLKEVV 478
+D DP D S Y L N+YA A +W++V VR MK+ + + PGC +++ + +
Sbjct: 606 IDKDPDDSSTYILLSNMYASAHKWDEVRVVRSKMKELGLKKNPGCSWIEINQKI 659
Score = 169 bits (428), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 102/353 (28%), Positives = 174/353 (49%), Gaps = 43/353 (12%)
Query: 54 CVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLA 113
C N VI Y S + + ++ M + GF PNS T + SCA+ + RG H
Sbjct: 174 CWNTVISCYYQSGNFKEALEYFGLMRRFGFEPNSVTITTAISSCARLLDLNRGMEIHEEL 233
Query: 114 LKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAH 173
+ +G + + ++L++MYG + G + A
Sbjct: 234 INSGFLLDSFISSALVDMYG-------------------------------KCGHLEMAI 262
Query: 174 ELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSA 233
E+F+ MP++ VV+WN MISGY G+ ++LF+ M G + T++S++ C RSA
Sbjct: 263 EVFEQMPKKTVVAWNSMISGYGLKGDSISCIQLFKRMYNEGVKPTLTTLSSLIMVCSRSA 322
Query: 234 RFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMIL 293
R EG+ VHGYT+R ++ ++ ++++L+DLY KC KVE+A+ +F + +V WN MI
Sbjct: 323 RLLEGKFVHGYTIRNRIQSDVFINSSLMDLYFKCGKVELAENIFKLIPKSKVVSWNVMIS 382
Query: 294 GHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMID 353
G+ GK E + LF+ + V PD ITF V+ AC + L +G + +I+
Sbjct: 383 GYVAEGKLFEALGLFSEMRKSYV-----EPDAITFTSVLTACSQLAALEKGEEIHNLIIE 437
Query: 354 FYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLS 406
K+ N + ++YA +EA + + +P+ + + W S+++
Sbjct: 438 -KKLDNNEVVMGALLDMYAKCGAVDEAFSVFKCLPKR------DLVSWTSMIT 483
Score = 136 bits (343), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 123/515 (23%), Positives = 223/515 (43%), Gaps = 62/515 (12%)
Query: 1 MKQLLQIQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCV-NAVI 59
+KQ I ++T GL N+ F NL+ D+ VF + NP + N ++
Sbjct: 19 LKQGKLIHQKVVTLGLQ-NDIFLCKNLINLYLSCHLYDHAKCVFDNMENPCEISLWNGLM 77
Query: 60 KAYSNSCVPDQGVVFYLQMIKNGFM-PNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGV 118
Y+ + + + + + +++ ++ P+SYT+ S+ +C G M H +K G+
Sbjct: 78 AGYTKNYMYVEALELFEKLLHYPYLKPDSYTYPSVLKACGGLYKYVLGKMIHTCLVKTGL 137
Query: 119 DFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDI 178
++ V +SL+ MY A + A W LF+
Sbjct: 138 MMDIVVGSSLVGMYAKCNAFEKA-------------IW------------------LFNE 166
Query: 179 MPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEG 238
MPE++V WN +IS Y +SGN +L+ F M + GF N T+ + +++C R N G
Sbjct: 167 MPEKDVACWNTVISCYYQSGNFKEALEYFGLMRRFGFEPNSVTITTAISSCARLLDLNRG 226
Query: 239 RSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIH 298
+H + + + + +AL+D+Y KC +E+A VF+ M + +V WN+MI G+ +
Sbjct: 227 MEIHEELINSGFLLDSFISSALVDMYGKCGHLEMAIEVFEQMPKKTVVAWNSMISGYGLK 286
Query: 299 GKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIK 358
G I+LF + N V P T +I C R+ L EG K+ +I+
Sbjct: 287 GDSISCIQLFKRMYNEGV-----KPTLTTLSSLIMVCSRSARLLEG-KFVHGYTIRNRIQ 340
Query: 359 PNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQG----AV 414
+ + +LY E AE I + +P+ + + W ++S +G A+
Sbjct: 341 SDVFINSSLMDLYFKCGKVELAENIFKLIPKS------KVVSWNVMISGYVAEGKLFEAL 394
Query: 415 AMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDL 474
+ + KS+V+ D F+ +L + E + L+ ++++ D
Sbjct: 395 GLFSEMRKSYVEPDAITFTS---VLTACSQLAALEKGEEIHNLIIEKKL---------DN 442
Query: 475 KEVVEKLKVGHFWRGGMKEEVNKMMECRQSRSLAT 509
EVV + + + G +E + +C R L +
Sbjct: 443 NEVVMGALLDMYAKCGAVDEAFSVFKCLPKRDLVS 477
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 59/119 (49%), Gaps = 5/119 (4%)
Query: 218 NDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVF 277
+ + + +L AC S +G+ +H V L+ +I L LI+LY C + A+ VF
Sbjct: 2 DTRKLLPLLRACMNSKSLKQGKLIHQKVVTLGLQNDIFLCKNLINLYLSCHLYDHAKCVF 61
Query: 278 DSMADR-NLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICAC 335
D+M + + WN ++ G+ + E ++LF L++ + PD T+ V+ AC
Sbjct: 62 DNMENPCEISLWNGLMAGYTKNYMYVEALELFEKLLHYPY----LKPDSYTYPSVLKAC 116
>gi|224066769|ref|XP_002302206.1| predicted protein [Populus trichocarpa]
gi|222843932|gb|EEE81479.1| predicted protein [Populus trichocarpa]
Length = 681
Score = 232 bits (592), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 139/494 (28%), Positives = 243/494 (49%), Gaps = 42/494 (8%)
Query: 6 QIQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAY--- 62
QI A ++ + + S T +L+ G D V + P F ++A+I Y
Sbjct: 193 QIHARILIDNMELD-SVLTSSLINLYGKCGDLDSAHCVLNTMEEPDDFSLSALITGYANH 251
Query: 63 -------------SNSCV---------------PDQGVVFYLQMIKNGFMPNSYTFVSLF 94
SNSCV + + + M K G + T ++
Sbjct: 252 GRMNDARRAFYRKSNSCVVVWNSLISGYVTNNEEIEAFLLFNDMQKKGLKVDFSTLATIL 311
Query: 95 GSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLI 154
+C+ + G H A K G+ + V ++ I+ Y G+++ A +F ++ D I
Sbjct: 312 SACSSLCNSQHGKQMHAYACKVGLICDNVVASAFIDAYSKCGSLNDACKLFSELKTYDTI 371
Query: 155 SWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSG 214
NS+++ + SG + A ++F+ MP ++++SWN MI G S++G P +L LF M K
Sbjct: 372 LLNSMITVYSNSGKIEDAKQIFNTMPSKSLISWNSMIVGLSQNGCPVEALDLFCMMNKLD 431
Query: 215 FRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQ 274
R N + SV++AC + G + L + ++ T+L+D Y KC +E+ +
Sbjct: 432 LRMNRFNLTSVISACASISSLELGEQIFARATVVGLDSDEVISTSLVDFYCKCGFIEIGR 491
Query: 275 RVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICA 334
++FD+M + + WN+M++G+ +G E + LF + + V P EITF GV+ A
Sbjct: 492 KLFDTMMKSDEISWNSMLMGYATNGHGLEALTLFNEMRHAGV-----RPTEITFTGVLSA 546
Query: 335 CVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNM 394
C L+ EG ++F M Y I P HY CM +L+A A EEA ++++MP + D
Sbjct: 547 CDHCGLVKEGWRWFNIMQYDYHIDPGIEHYSCMVDLFARAGCLEEAMNLIKRMPFEAD-- 604
Query: 395 SFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARV 454
+ MW S+L C G + E++A+ +++DP++ Y L +++A +G WE A V
Sbjct: 605 ---ASMWSSVLRGCMAHGEKDLGEKVAQQIIELDPENSGAYVQLSSIFATSGDWESSALV 661
Query: 455 RELMKKRRMGRMPG 468
R++M++R++ + PG
Sbjct: 662 RKVMQERQVQKYPG 675
Score = 124 bits (310), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 81/327 (24%), Positives = 150/327 (45%), Gaps = 39/327 (11%)
Query: 56 NAVIKAYSNSCVPDQGVVFYLQMIKNGFMP---NSYTFVSLFGSCAKTGCVERGGMCHGL 112
N++I +Y+ + P + V + ++ + +++ ++ G+C G ++ G H
Sbjct: 138 NSMIHSYARNGSPREAVRLFKELNLDPLDKSCCDTFVLATVIGACTDLGEIQCGKQIHAR 197
Query: 113 ALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAA 172
L + ++ + + +SLIN+YG G +D A + M D S +++++G+ G M+ A
Sbjct: 198 ILIDNMELDSVLTSSLINLYGKCGDLDSAHCVLNTMEEPDDFSLSALITGYANHGRMNDA 257
Query: 173 HELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRS 232
F VV WN +ISGY + + LF +M K G + + T+A++L+AC
Sbjct: 258 RRAFYRKSNSCVVVWNSLISGYVTNNEEIEAFLLFNDMQKKGLKVDFSTLATILSACSSL 317
Query: 233 ARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKC------------------------- 267
G+ +H Y + L + ++ +A ID YSKC
Sbjct: 318 CNSQHGKQMHAYACKVGLICDNVVASAFIDAYSKCGSLNDACKLFSELKTYDTILLNSMI 377
Query: 268 ------QKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSI 321
K+E A+++F++M ++L+ WN+MI+G +G P E + LF ++N +
Sbjct: 378 TVYSNSGKIEDAKQIFNTMPSKSLISWNSMIVGLSQNGCPVEALDLF-CMMNKL----DL 432
Query: 322 SPDEITFIGVICACVRAELLTEGRKYF 348
+ VI AC L G + F
Sbjct: 433 RMNRFNLTSVISACASISSLELGEQIF 459
Score = 102 bits (254), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 67/252 (26%), Positives = 120/252 (47%), Gaps = 41/252 (16%)
Query: 103 VERGGMCHGLALKNG-VDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVS 161
+ +G H L K G + L + N L+ MY G+M A +F +M R+ SWN+++
Sbjct: 21 IHQGKQLHILFFKKGLIQSTLSLANRLLQMYTRCGSMTDAHKLFDEMPHRNCFSWNTMIE 80
Query: 162 GHVRSG-------------------------------DMSAAHELFDIMPERNVVSWNIM 190
G+++SG +M A LF+ MP RN V WN M
Sbjct: 81 GYMKSGNKERSIRLFDMMSNKNDYSWNVVFSGFAKAGEMEIARRLFNEMPNRNGVVWNSM 140
Query: 191 ISGYSKSGNPGCSLKLFREMMKSGFRGNDKT------MASVLTACGRSARFNEGRSVHGY 244
I Y+++G+P +++LF+E+ DK+ +A+V+ AC G+ +H
Sbjct: 141 IHSYARNGSPREAVRLFKELNLDPL---DKSCCDTFVLATVIGACTDLGEIQCGKQIHAR 197
Query: 245 TVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEG 304
+ +++ + +L ++LI+LY KC ++ A V ++M + + +A+I G+ HG+ +
Sbjct: 198 ILIDNMELDSVLTSSLINLYGKCGDLDSAHCVLNTMEEPDDFSLSALITGYANHGRMNDA 257
Query: 305 IKLFTALVNGTV 316
+ F N V
Sbjct: 258 RRAFYRKSNSCV 269
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 50/244 (20%), Positives = 102/244 (41%), Gaps = 17/244 (6%)
Query: 220 KTMASVLTACGRSARFNEGRSVHGYTVRTSL-KPNIILDTALIDLYSKCQKVEVAQRVFD 278
+ +A L + ++G+ +H + L + + L L+ +Y++C + A ++FD
Sbjct: 6 QNLARFLQSLNTPHSIHQGKQLHILFFKKGLIQSTLSLANRLLQMYTRCGSMTDAHKLFD 65
Query: 279 SMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRA 338
M RN WN MI G+ G E I+LF + N ++ ++ V +A
Sbjct: 66 EMPHRNCFSWNTMIEGYMKSGNKERSIRLFDMMSN---------KNDYSWNVVFSGFAKA 116
Query: 339 ELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDN-DNMSFE 397
+ R+ F +M + + N M + YA EA + +++ D D +
Sbjct: 117 GEMEIARRLFNEMPNRNGVVWN-----SMIHSYARNGSPREAVRLFKELNLDPLDKSCCD 171
Query: 398 SIMWVSLLSLCRFQGAVAMVERL-AKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRE 456
+ + +++ C G + +++ A+ +D D L+N+Y G + V
Sbjct: 172 TFVLATVIGACTDLGEIQCGKQIHARILIDNMELDSVLTSSLINLYGKCGDLDSAHCVLN 231
Query: 457 LMKK 460
M++
Sbjct: 232 TMEE 235
>gi|297844796|ref|XP_002890279.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297336121|gb|EFH66538.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 953
Score = 232 bits (592), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 137/462 (29%), Positives = 233/462 (50%), Gaps = 41/462 (8%)
Query: 32 ADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFV 91
A GS Y VF I + NA+I Y+ S P + +LQM +G +P+++T
Sbjct: 425 AKCGSLSYAQRVFHGIRSKTLNSWNALIGGYAQSSDPRLSLDAHLQMKNSGLLPDNFTVC 484
Query: 92 SLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPR 151
SL +C+K + G HG ++N ++ +L V S++++Y G + + +F M
Sbjct: 485 SLLSACSKLKSLRLGKEVHGFIIRNWLERDLFVYLSVLSLYIHCGELCTVQVLFDAMEDN 544
Query: 152 DLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMM 211
L+SWN++++GH+++G PER +L LFR+M+
Sbjct: 545 SLVSWNTVITGHLQNG-----------FPER--------------------ALGLFRQMV 573
Query: 212 KSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVE 271
G + +M +V AC GR H Y ++ L+ N + ++ID+Y+K +
Sbjct: 574 LYGIQPCGISMMTVFGACSLLPSLRLGREAHAYALKHLLEDNAFIACSIIDMYAKNGAIT 633
Query: 272 VAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGV 331
+ +VF+ + +++ WNAMI+G+ +HG+ +E IKLF + +PD++TF+GV
Sbjct: 634 QSSKVFNGLKEKSAASWNAMIMGYGMHGRAKEAIKLFEEMQR-----TGRNPDDLTFLGV 688
Query: 332 ICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDN 391
+ AC + LL EG +Y QM + +KPN HY C+ ++ A + A + +M E+
Sbjct: 689 LTACNHSGLLHEGLRYLDQMKSSFGLKPNLKHYACVIDMLGRAGQLDNALRVAAEMSEEP 748
Query: 392 DNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDV 451
D +W SLLS CR + M E++A ++P+ Y L N+YA G+W+DV
Sbjct: 749 D-----VGIWNSLLSWCRIHQNLEMGEKVAAKLFVLEPEKPENYVLLSNLYAGLGKWDDV 803
Query: 452 ARVRELMKKRRMGRMPGCRLVDLKEVVEKLKVGHFWRGGMKE 493
+VR+ MK+ + + GC ++L V VG + G +E
Sbjct: 804 RQVRQRMKEMSLRKDAGCSWIELNGKVFSFVVGERFLDGFEE 845
Score = 140 bits (354), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 96/341 (28%), Positives = 159/341 (46%), Gaps = 52/341 (15%)
Query: 35 GSPDYTVLVFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMI-KNGFMPNSYTFVSL 93
GSPD + F + + F NAVI +YS + + + + +++MI K +P+++TF +
Sbjct: 134 GSPDDSRSAFDALRSKNLFQWNAVISSYSRNELYHEVLEMFIKMISKTHLLPDNFTFPCV 193
Query: 94 FGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDL 153
+CA V G HGL +K G+ +L V N+L++ YG G FV
Sbjct: 194 IKACAGISDVGIGLAVHGLVVKTGLVEDLFVGNALVSFYGTHG--------FV------- 238
Query: 154 ISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKS 213
S A +LFDIMPERN+VSWN MI +S +G+ G
Sbjct: 239 ----------------SDALKLFDIMPERNLVSWNSMIRVFSDNGDDG------------ 270
Query: 214 GFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVA 273
F + T+ +VL C R G+ VHG+ V+ SL ++++ AL+D+YSK + +
Sbjct: 271 AFMPDVATVVTVLPVCAREREIGVGKGVHGWAVKLSLDKELVVNNALMDMYSKWGCIIDS 330
Query: 274 QRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVIC 333
Q +F ++N+V WN M+ G G L ++ G+ + DE+T + +
Sbjct: 331 QMIFKLNNNKNVVSWNTMVGGFSAEGDIHGTFDLLRQMLAGS---EDVKADEVTILNAVP 387
Query: 334 ACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGA 374
C +L ++ + Y +K F + +AN + +
Sbjct: 388 VCFDESVLPSLKE-----LHCYSLKQEFVYDELLANAFVAS 423
Score = 110 bits (276), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 61/190 (32%), Positives = 104/190 (54%), Gaps = 5/190 (2%)
Query: 157 NSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFR 216
N+ V+ + + G +S A +F + + + SWN +I GY++S +P SL +M SG
Sbjct: 418 NAFVASYAKCGSLSYAQRVFHGIRSKTLNSWNALIGGYAQSSDPRLSLDAHLQMKNSGLL 477
Query: 217 GNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRV 276
++ T+ S+L+AC + G+ VHG+ +R L+ ++ + +++ LY C ++ Q +
Sbjct: 478 PDNFTVCSLLSACSKLKSLRLGKEVHGFIIRNWLERDLFVYLSVLSLYIHCGELCTVQVL 537
Query: 277 FDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACV 336
FD+M D +LV WN +I GH +G PE + LF +V + G I P I+ + V AC
Sbjct: 538 FDAMEDNSLVSWNTVITGHLQNGFPERALGLFRQMV---LYG--IQPCGISMMTVFGACS 592
Query: 337 RAELLTEGRK 346
L GR+
Sbjct: 593 LLPSLRLGRE 602
Score = 101 bits (251), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 80/344 (23%), Positives = 150/344 (43%), Gaps = 48/344 (13%)
Query: 67 VPDQGVVFYLQMIK----NG----FMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGV 118
+P++ +V + MI+ NG FMP+ T V++ CA+ + G HG A+K +
Sbjct: 248 MPERNLVSWNSMIRVFSDNGDDGAFMPDVATVVTVLPVCAREREIGVGKGVHGWAVKLSL 307
Query: 119 DFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDI 178
D EL V N+L++MY W I+ + +F +
Sbjct: 308 DKELVVNNALMDMYS---------------------KWGCIIDSQM----------IFKL 336
Query: 179 MPERNVVSWNIMISGYSKSGNPGCSLKLFREMM--KSGFRGNDKTMASVLTACGRSARFN 236
+NVVSWN M+ G+S G+ + L R+M+ + ++ T+ + + C +
Sbjct: 337 NNNKNVVSWNTMVGGFSAEGDIHGTFDLLRQMLAGSEDVKADEVTILNAVPVCFDESVLP 396
Query: 237 EGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHC 296
+ +H Y+++ + +L A + Y+KC + AQRVF + + L WNA+I G+
Sbjct: 397 SLKELHCYSLKQEFVYDELLANAFVASYAKCGSLSYAQRVFHGIRSKTLNSWNALIGGYA 456
Query: 297 IHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYK 356
P + + N + PD T ++ AC + + L G++ +I +
Sbjct: 457 QSSDPRLSLDAHLQMKN-----SGLLPDNFTVCSLLSACSKLKSLRLGKEVHGFIIRNWL 511
Query: 357 IKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIM 400
+ F + ++ EL ++L EDN +S+ +++
Sbjct: 512 ERDLFVYLSVLSLYIHCGELC--TVQVLFDAMEDNSLVSWNTVI 553
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 53/188 (28%), Positives = 90/188 (47%), Gaps = 18/188 (9%)
Query: 159 IVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMM-KSGFRG 217
I++ + G + FD + +N+ WN +IS YS++ L++F +M+ K+
Sbjct: 126 IITMYAMCGSPDDSRSAFDALRSKNLFQWNAVISSYSRNELYHEVLEMFIKMISKTHLLP 185
Query: 218 NDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVF 277
++ T V+ AC + G +VHG V+T L ++ + AL+ Y V A ++F
Sbjct: 186 DNFTFPCVIKACAGISDVGIGLAVHGLVVKTGLVEDLFVGNALVSFYGTHGFVSDALKLF 245
Query: 278 DSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVR 337
D M +RNLV WN+M I++F+ NG G+ PD T + V+ C R
Sbjct: 246 DIMPERNLVSWNSM-------------IRVFSD--NGD--DGAFMPDVATVVTVLPVCAR 288
Query: 338 AELLTEGR 345
+ G+
Sbjct: 289 EREIGVGK 296
Score = 57.8 bits (138), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/157 (26%), Positives = 76/157 (48%), Gaps = 21/157 (13%)
Query: 191 ISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASV-----------LTACGRSARFNEGR 239
IS + ++G+ S ++ +E F G+D++ + V L A G+ GR
Sbjct: 50 ISNFCETGDLDKSFRVVQE-----FAGDDESSSDVFLLVREALGLLLQASGKRKDIEMGR 104
Query: 240 SVHGYTV-RTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIH 298
+H T L+ + +L T +I +Y+ C + ++ FD++ +NL WNA+I + +
Sbjct: 105 KIHHLVSGSTRLRSDDVLCTRIITMYAMCGSPDDSRSAFDALRSKNLFQWNAVISSYSRN 164
Query: 299 GKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICAC 335
E +++F +++ T + PD TF VI AC
Sbjct: 165 ELYHEVLEMFIKMISKT----HLLPDNFTFPCVIKAC 197
Score = 45.1 bits (105), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 41/174 (23%), Positives = 77/174 (44%), Gaps = 8/174 (4%)
Query: 16 LFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFY 75
L +N+F +++ A G+ + VF + NA+I Y + + +
Sbjct: 611 LLEDNAFIACSIIDMYAKNGAITQSSKVFNGLKEKSAASWNAMIMGYGMHGRAKEAIKLF 670
Query: 76 LQMIKNGFMPNSYTFVSLFGSCAKTGCVERG-GMCHGLALKNGVDFELPVMNSLINMYGC 134
+M + G P+ TF+ + +C +G + G + G+ L +I+M G
Sbjct: 671 EEMQRTGRNPDDLTFLGVLTACNHSGLLHEGLRYLDQMKSSFGLKPNLKHYACVIDMLGR 730
Query: 135 FGAMDCARNMFVQMSPR-DLISWNSIVS-----GHVRSGDMSAAHELFDIMPER 182
G +D A + +MS D+ WNS++S ++ G+ AA +LF + PE+
Sbjct: 731 AGQLDNALRVAAEMSEEPDVGIWNSLLSWCRIHQNLEMGEKVAA-KLFVLEPEK 783
>gi|297819260|ref|XP_002877513.1| hypothetical protein ARALYDRAFT_905886 [Arabidopsis lyrata subsp.
lyrata]
gi|297323351|gb|EFH53772.1| hypothetical protein ARALYDRAFT_905886 [Arabidopsis lyrata subsp.
lyrata]
Length = 657
Score = 232 bits (592), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 137/471 (29%), Positives = 235/471 (49%), Gaps = 50/471 (10%)
Query: 5 LQIQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSN 64
L++ H++ +G + F L+ +D GS DY VF + NA+ +A +
Sbjct: 97 LRVHRHILDNG-SDQDPFLATKLIGMYSDLGSVDYARKVFDKTRKRTIYVWNALFRALTL 155
Query: 65 SCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGC----VERGGMCHGLALKNGVDF 120
+ ++ + Y +M + G + +T+ + +C + C + +G H + G +
Sbjct: 156 AGHGEEVLGLYWKMNRIGVESDRFTYTYVLKACVASECTADHLTKGKEIHAHLTRRGYNS 215
Query: 121 ELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMP 180
+ +M +L++MY FG +D A +F M R+++SW++
Sbjct: 216 HVYIMTTLVDMYARFGCVDYASYVFNGMPVRNVVSWSA---------------------- 253
Query: 181 ERNVVSWNIMISGYSKSGNPGCSLKLFREMMKS--GFRGNDKTMASVLTACGRSARFNEG 238
MI+ Y+K+G +L+ FREMM N TM SVL AC A +G
Sbjct: 254 ---------MIACYAKNGKAFEALRTFREMMTETKDSSPNSVTMVSVLQACASLAALEQG 304
Query: 239 RSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIH 298
R +HGY +R L + + +AL+ +Y +C K++V QRVFD M DR++V WN++I + +H
Sbjct: 305 RLIHGYILRRGLDSILPVISALVTMYGRCGKLDVGQRVFDRMHDRDVVSWNSLISSYGVH 364
Query: 299 GKPEEGIKLFTA-LVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKI 357
G + I++F L NG SP +TF+ V+ AC L+ EG++ F M + I
Sbjct: 365 GYGRKAIQIFEEMLANGA------SPTPVTFVSVLGACSHEGLVEEGKRLFESMWRDHGI 418
Query: 358 KPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMV 417
KP HY CM +L A +EA ++++ M + +W SLL CR G V +
Sbjct: 419 KPQVEHYACMVDLLGRANRLDEAAKMVQDMRTEPGPK-----VWGSLLGSCRIHGNVELA 473
Query: 418 ERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPG 468
ER ++ ++P++ Y L ++YA A W++V RV++L++ R + ++PG
Sbjct: 474 ERASRRLFALEPKNAGNYVLLADIYAEAQMWDEVKRVKKLLEHRGLQKLPG 524
Score = 95.5 bits (236), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 68/274 (24%), Positives = 115/274 (41%), Gaps = 38/274 (13%)
Query: 76 LQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCF 135
L+++ P+ T+ L C + G H L NG D + + LI MY
Sbjct: 66 LRVLSQESSPSQQTYELLILCCGHRSSLSDGLRVHRHILDNGSDQDPFLATKLIGMYSDL 125
Query: 136 GAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYS 195
G++D AR +F D +R + WN + +
Sbjct: 126 GSVDYARKVF-------------------------------DKTRKRTIYVWNALFRALT 154
Query: 196 KSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSA----RFNEGRSVHGYTVRTSLK 251
+G+ L L+ +M + G + T VL AC S +G+ +H + R
Sbjct: 155 LAGHGEEVLGLYWKMNRIGVESDRFTYTYVLKACVASECTADHLTKGKEIHAHLTRRGYN 214
Query: 252 PNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTAL 311
++ + T L+D+Y++ V+ A VF+ M RN+V W+AMI + +GK E ++ F +
Sbjct: 215 SHVYIMTTLVDMYARFGCVDYASYVFNGMPVRNVVSWSAMIACYAKNGKAFEALRTFREM 274
Query: 312 VNGTVAGGSISPDEITFIGVICACVRAELLTEGR 345
+ T SP+ +T + V+ AC L +GR
Sbjct: 275 MTET---KDSSPNSVTMVSVLQACASLAALEQGR 305
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 47/210 (22%), Positives = 86/210 (40%), Gaps = 12/210 (5%)
Query: 185 VSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGY 244
+S N +I K G +L++ + + +T ++ CG + ++G VH +
Sbjct: 47 ISNNQLIQSLCKEGKLKQALRVLSQESSP----SQQTYELLILCCGHRSSLSDGLRVHRH 102
Query: 245 TVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEG 304
+ + L T LI +YS V+ A++VFD R + WNA+ + G EE
Sbjct: 103 ILDNGSDQDPFLATKLIGMYSDLGSVDYARKVFDKTRKRTIYVWNALFRALTLAGHGEEV 162
Query: 305 IKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHY 364
+ L+ + + D T+ V+ ACV +E + +++ + +H
Sbjct: 163 LGLYWKMNR-----IGVESDRFTYTYVLKACVASECTADHLTKGKEIHAHLTRRGYNSHV 217
Query: 365 WCMANL---YAGAELTEEAEEILRKMPEDN 391
+ M L YA + A + MP N
Sbjct: 218 YIMTTLVDMYARFGCVDYASYVFNGMPVRN 247
>gi|449480302|ref|XP_004155856.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Cucumis sativus]
Length = 654
Score = 232 bits (591), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 136/480 (28%), Positives = 239/480 (49%), Gaps = 47/480 (9%)
Query: 6 QIQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSNS 65
Q+ +++ S L+ + +N+ D S + +F+ + + ++I Y +
Sbjct: 104 QVVKYMLHSDLYIETTL--LNMYAACGDLKSARF---LFERMGHRNKVVWTSMISGYMKN 158
Query: 66 CVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVM 125
P++ ++ Y +M ++GF P+ T +L +CA+ + G H + + +
Sbjct: 159 HCPNEALLLYKKMEEDGFSPDEVTMATLVSACAELKDLGVGMKLHSHIREMDMKICAVLG 218
Query: 126 NSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVV 185
++L+NMY + GD+ A ++FD + +++V
Sbjct: 219 SALVNMYA-------------------------------KCGDLKTARQVFDQLSDKDVY 247
Query: 186 SWNIMISGYSKSGNPGCSLKLFREMMK-SGFRGNDKTMASVLTACGRSARFNEGRSVHGY 244
+W+ +I GY K+ +L+LFRE+ S R N+ T+ +V++AC + GR VH Y
Sbjct: 248 AWSALIFGYVKNNRSTEALQLFREVAGGSNMRPNEVTILAVISACAQLGDLETGRWVHDY 307
Query: 245 TVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEG 304
RT ++ L+ +LID++SKC ++ A+R+FDSM+ ++L+ WN+M+ G +HG E
Sbjct: 308 ITRTQKGHSVSLNNSLIDMFSKCGDIDAAKRIFDSMSYKDLISWNSMVNGLALHGLGREA 367
Query: 305 IKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHY 364
+ F L+ T + PDEITFIGV+ AC A L+ EG+K F ++ Y ++ HY
Sbjct: 368 LAQF-HLMQTT----DLQPDEITFIGVLTACSHAGLVQEGKKLFYEIEALYGVRLKSEHY 422
Query: 365 WCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSF 424
CM +L A L EA E +R MP D +W S+L CR + + E A+
Sbjct: 423 GCMVDLLCRAGLLAEAREFIRVMPLQPDGA-----IWGSMLGACRVYNNLELGEEAARCL 477
Query: 425 VDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLKEVVEKLKVG 484
++++P + Y L N+YA W +V +VRELM ++ + + PGC V + + G
Sbjct: 478 LELEPTNDGVYILLSNIYARRKMWNEVKKVRELMNEKGIQKTPGCSSVVIDNIAHSFLAG 537
Score = 143 bits (360), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 89/323 (27%), Positives = 161/323 (49%), Gaps = 40/323 (12%)
Query: 27 LLKHSADFGS--PDYTVLVFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGF- 83
L+ H GS Y VF N++++A+ NS +P + + Y +M++
Sbjct: 16 LIAHVLSMGSLGVGYAYSVFAHTRVLDVLTWNSMLRAFVNSNMPRRALQSYTEMLERSRN 75
Query: 84 MPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARN 143
+P+ +TF SL CA + G + HG +K + +L + +L+NMY G + AR
Sbjct: 76 VPDRFTFPSLLKGCALLLEFKVGKVLHGQVVKYMLHSDLYIETTLLNMYAACGDLKSARF 135
Query: 144 MFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCS 203
+F +M R+ + W S++S GY K+ P +
Sbjct: 136 LFERMGHRNKVVWTSMIS-------------------------------GYMKNHCPNEA 164
Query: 204 LKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDL 263
L L+++M + GF ++ TMA++++AC G +H + +K +L +AL+++
Sbjct: 165 LLLYKKMEEDGFSPDEVTMATLVSACAELKDLGVGMKLHSHIREMDMKICAVLGSALVNM 224
Query: 264 YSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGS-IS 322
Y+KC ++ A++VFD ++D+++ W+A+I G+ + + E ++LF VAGGS +
Sbjct: 225 YAKCGDLKTARQVFDQLSDKDVYAWSALIFGYVKNNRSTEALQLFR-----EVAGGSNMR 279
Query: 323 PDEITFIGVICACVRAELLTEGR 345
P+E+T + VI AC + L GR
Sbjct: 280 PNEVTILAVISACAQLGDLETGR 302
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 56/213 (26%), Positives = 104/213 (48%), Gaps = 15/213 (7%)
Query: 145 FVQMSPRDLISWNSIVSGHVRSGDMSA--AHELFDIMPERNVVSWNIMISGYSKSGNPGC 202
F+ P S N +++ + G + A+ +F +V++WN M+ + S P
Sbjct: 6 FIHHKP----SLNKLIAHVLSMGSLGVGYAYSVFAHTRVLDVLTWNSMLRAFVNSNMPRR 61
Query: 203 SLKLFREMMKSGFRGNDK-TMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALI 261
+L+ + EM++ D+ T S+L C F G+ +HG V+ L ++ ++T L+
Sbjct: 62 ALQSYTEMLERSRNVPDRFTFPSLLKGCALLLEFKVGKVLHGQVVKYMLHSDLYIETTLL 121
Query: 262 DLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSI 321
++Y+ C ++ A+ +F+ M RN V W +MI G+ + P E + L+ +
Sbjct: 122 NMYAACGDLKSARFLFERMGHRNKVVWTSMISGYMKNHCPNEALLLYKKMEE-----DGF 176
Query: 322 SPDEITFIGVICACVRAELLTEGRK---YFRQM 351
SPDE+T ++ AC + L G K + R+M
Sbjct: 177 SPDEVTMATLVSACAELKDLGVGMKLHSHIREM 209
>gi|115477555|ref|NP_001062373.1| Os08g0538800 [Oryza sativa Japonica Group]
gi|50725675|dbj|BAD33141.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
gi|113624342|dbj|BAF24287.1| Os08g0538800 [Oryza sativa Japonica Group]
gi|215697775|dbj|BAG91968.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 581
Score = 232 bits (591), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 129/434 (29%), Positives = 215/434 (49%), Gaps = 43/434 (9%)
Query: 56 NAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALK 115
N +I Y +P++ + + QM K + T +++ +CA+TG ++ G +CH L +
Sbjct: 165 NTIIAGYIRGGMPNKALQSFHQMAKEQVRLDEVTLLNVLVACARTGAMKVGSLCHALVVL 224
Query: 116 NGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHEL 175
NG + + +SL++MY G ++ AR +
Sbjct: 225 NGFEINCYIGSSLVSMYAKCGMVEEAR-------------------------------RV 253
Query: 176 FDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARF 235
F+ MPERNVV W MI+G ++SG ++ LFR+M +G + +D T+A+V+++CG+
Sbjct: 254 FNRMPERNVVCWTSMIAGCTQSGRFKEAVDLFRDMQIAGVKADDATIATVVSSCGQMGAL 313
Query: 236 NEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGH 295
+ GR +H Y L + + +LID+YSKC V A ++F + R++ W MI+G
Sbjct: 314 DLGRYLHAYCDGHGLGKELSVKNSLIDMYSKCGDVNKAYQIFHGLTKRDVFTWTVMIMGF 373
Query: 296 CIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFY 355
++G E + LF + + P+E+ F+GV+ AC L+ +G +F +M Y
Sbjct: 374 AMNGLCVEALDLFAQM----EGEDKVMPNEVIFLGVLTACSHGGLVEQGYHHFHRMSKVY 429
Query: 356 KIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVA 415
+ P HY CM +L A+L EAE+ ++ MP D ++W SLL CR G V
Sbjct: 430 NLVPRIEHYGCMVDLLGRAKLLAEAEQFIKDMPVAPD-----VVVWRSLLFACRASGQVG 484
Query: 416 MVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLK 475
+ E A+ ++P+ + L NVYA +W DV VR M R + PGC +++
Sbjct: 485 LAEYAAERIEQLEPKRCGGHVLLSNVYATTLRWVDVNNVRTGMGNSRTSKKPGCSFIEVD 544
Query: 476 EVVEKLKVG---HF 486
+ + G HF
Sbjct: 545 GCIHEFFAGDESHF 558
Score = 118 bits (295), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 86/323 (26%), Positives = 149/323 (46%), Gaps = 35/323 (10%)
Query: 86 NSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMF 145
++Y+ + A+ ++ G H L+LK + + V+N+LINMY AR +
Sbjct: 92 DNYSLNIAISAAARVPSLDVGSQFHALSLKLSLASDSFVLNALINMYSSCNYPASAR-LV 150
Query: 146 VQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLK 205
+ +PR W S +VVSWN +I+GY + G P +L+
Sbjct: 151 LDSAPR----WAS------------------------DVVSWNTIIAGYIRGGMPNKALQ 182
Query: 206 LFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYS 265
F +M K R ++ T+ +VL AC R+ G H V + N + ++L+ +Y+
Sbjct: 183 SFHQMAKEQVRLDEVTLLNVLVACARTGAMKVGSLCHALVVLNGFEINCYIGSSLVSMYA 242
Query: 266 KCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDE 325
KC VE A+RVF+ M +RN+VCW +MI G G+ +E + LF + +AG + D+
Sbjct: 243 KCGMVEEARRVFNRMPERNVVCWTSMIAGCTQSGRFKEAVDLFRDM---QIAG--VKADD 297
Query: 326 ITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILR 385
T V+ +C + L GR Y D + + + + ++Y+ +A +I
Sbjct: 298 ATIATVVSSCGQMGALDLGR-YLHAYCDGHGLGKELSVKNSLIDMYSKCGDVNKAYQIFH 356
Query: 386 KMPEDNDNMSFESIMWVSLLSLC 408
+ + + IM ++ LC
Sbjct: 357 GLTKRDVFTWTVMIMGFAMNGLC 379
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 52/217 (23%), Positives = 97/217 (44%), Gaps = 18/217 (8%)
Query: 218 NDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVF 277
++ ++ ++A R + G H +++ SL + + ALI++YS C A+ V
Sbjct: 92 DNYSLNIAISAAARVPSLDVGSQFHALSLKLSLASDSFVLNALINMYSSCNYPASARLVL 151
Query: 278 DSMA--DRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICAC 335
DS ++V WN +I G+ G P + ++ F + A + DE+T + V+ AC
Sbjct: 152 DSAPRWASDVVSWNTIIAGYIRGGMPNKALQSFHQM-----AKEQVRLDEVTLLNVLVAC 206
Query: 336 VRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMS 395
R + G ++ + N + ++YA + EEA + +MPE N
Sbjct: 207 ARTGAMKVG-SLCHALVVLNGFEINCYIGSSLVSMYAKCGMVEEARRVFNRMPERN---- 261
Query: 396 FESIMWVSLLSLC----RFQGAVAMVERLAKSFVDMD 428
+ W S+++ C RF+ AV + + + V D
Sbjct: 262 --VVCWTSMIAGCTQSGRFKEAVDLFRDMQIAGVKAD 296
Score = 59.3 bits (142), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 64/286 (22%), Positives = 111/286 (38%), Gaps = 44/286 (15%)
Query: 17 FFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYL 76
F N + +L+ A G + VF + C ++I + S + V +
Sbjct: 227 FEINCYIGSSLVSMYAKCGMVEEARRVFNRMPERNVVCWTSMIAGCTQSGRFKEAVDLFR 286
Query: 77 QMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFG 136
M G + T ++ SC + G ++ G H +G+ EL V NSLI+MY G
Sbjct: 287 DMQIAGVKADDATIATVVSSCGQMGALDLGRYLHAYCDGHGLGKELSVKNSLIDMYSKCG 346
Query: 137 AMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSK 196
++ A +F ++ RD+ +W +MI G++
Sbjct: 347 DVNKAYQIFHGLTKRDVFTW-------------------------------TVMIMGFAM 375
Query: 197 SGNPGCSLKLFREMMKSGFRGNDKTMAS------VLTACGRSARFNEG-RSVHGYTVRTS 249
+G +L LF +M G DK M + VLTAC +G H + +
Sbjct: 376 NGLCVEALDLFAQM-----EGEDKVMPNEVIFLGVLTACSHGGLVEQGYHHFHRMSKVYN 430
Query: 250 LKPNIILDTALIDLYSKCQKV-EVAQRVFDSMADRNLVCWNAMILG 294
L P I ++DL + + + E Q + D ++V W +++
Sbjct: 431 LVPRIEHYGCMVDLLGRAKLLAEAEQFIKDMPVAPDVVVWRSLLFA 476
>gi|145333528|ref|NP_001078414.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|223635630|sp|A8MQA3.2|PP330_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g21065
gi|332658994|gb|AEE84394.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 595
Score = 232 bits (591), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 139/489 (28%), Positives = 248/489 (50%), Gaps = 45/489 (9%)
Query: 1 MKQLLQIQAHLITSGLFFNNSFWTINLLKHSADFGSP---DYTVLVFKCINNP-GTFCVN 56
+ +L QI A I G+ +++ +L+ + SP Y VF I P F N
Sbjct: 30 ITKLRQIHAFSIRHGVSISDAELGKHLIFYLVSLPSPPPMSYAHKVFSKIEKPINVFIWN 89
Query: 57 AVIKAYSNSCVPDQGVVFYLQMIKNGFM-PNSYTFVSLFGSCAKTGCVERGGMCHGLALK 115
+I+ Y+ Y +M +G + P+++T+ L + V G H + ++
Sbjct: 90 TLIRGYAEIGNSISAFSLYREMRVSGLVEPDTHTYPFLIKAVTTMADVRLGETIHSVVIR 149
Query: 116 NGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHEL 175
+G + V NSL+++Y +C GD+++A+++
Sbjct: 150 SGFGSLIYVQNSLLHLYA-----NC--------------------------GDVASAYKV 178
Query: 176 FDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARF 235
FD MPE+++V+WN +I+G++++G P +L L+ EM G + + T+ S+L+AC +
Sbjct: 179 FDKMPEKDLVAWNSVINGFAENGKPEEALALYTEMNSKGIKPDGFTIVSLLSACAKIGAL 238
Query: 236 NEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGH 295
G+ VH Y ++ L N+ L+DLY++C +VE A+ +FD M D+N V W ++I+G
Sbjct: 239 TLGKRVHVYMIKVGLTRNLHSSNVLLDLYARCGRVEEAKTLFDEMVDKNSVSWTSLIVGL 298
Query: 296 CIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFY 355
++G +E I+LF + + + P EITF+G++ AC ++ EG +YFR+M + Y
Sbjct: 299 AVNGFGKEAIELFKYMESTE----GLLPCEITFVGILYACSHCGMVKEGFEYFRRMREEY 354
Query: 356 KIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVA 415
KI+P H+ CM +L A A ++A E ++ MP M ++W +LL C G
Sbjct: 355 KIEPRIEHFGCMVDLLARAGQVKKAYEYIKSMP-----MQPNVVIWRTLLGACTVHGDSD 409
Query: 416 MVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLK 475
+ E + ++P Y L N+YA +W DV ++R+ M + + ++PG LV++
Sbjct: 410 LAEFARIQILQLEPNHSGDYVLLSNMYASEQRWSDVQKIRKQMLRDGVKKVPGHSLVEVG 469
Query: 476 EVVEKLKVG 484
V + +G
Sbjct: 470 NRVHEFLMG 478
>gi|413946157|gb|AFW78806.1| hypothetical protein ZEAMMB73_634908 [Zea mays]
Length = 1145
Score = 232 bits (591), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 125/433 (28%), Positives = 227/433 (52%), Gaps = 11/433 (2%)
Query: 52 TFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHG 111
T +I Y+ + +Q +V + + G +P+ + S F +C+ +E G H
Sbjct: 383 TISWAGMIAGYARNGRSEQALVSLQALHRKGMLPSLSSLTSSFFACSNIEALETGKQVHS 442
Query: 112 LALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSA 171
LA+K G F V N+LI +YG + ++ R +F +M+ +D +S+NS +S V++
Sbjct: 443 LAVKAGCQFNSYVCNALITLYGKYRSIGSVRQIFDRMTVKDTVSYNSFMSALVQNNLFDE 502
Query: 172 AHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGR 231
A ++F+ MP +VVSW +IS +++ ++++FR M+ N + +L G
Sbjct: 503 ARDVFNNMPSPDVVSWTTIISACAQADQGNEAVEIFRSMLHERELPNPPILTILLGLSGN 562
Query: 232 SARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAM 291
G+ +H ++ + +++ AL+ +Y KC + + +VFDSM +R++ WN +
Sbjct: 563 LGAPQLGQQIHTIAIKLGMDSGLVVANALVSMYFKCSSAD-SLKVFDSMEERDIFTWNTI 621
Query: 292 ILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQM 351
I G+ HG E I+++ +V+ V P+E+TF+G++ AC + L+ EG ++F+ M
Sbjct: 622 ITGYAQHGLGREAIRMYQLMVSAGVL-----PNEVTFVGLLHACSHSGLVDEGHQFFKSM 676
Query: 352 IDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQ 411
Y + P HY CM +L A + AE + MP + D S++W +LL C+
Sbjct: 677 SSDYGLTPLLEHYACMVDLLGRAGDVQGAEHFIYDMPIEPD-----SVIWSALLGACKIH 731
Query: 412 GAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRL 471
V + R A+ ++P + Y L N+Y+ G W++VA+VR+LMK+R + + PGC
Sbjct: 732 KNVEIGRRAAEKLFSIEPSNAGNYVMLSNIYSSQGMWDEVAKVRKLMKERGVNKDPGCSW 791
Query: 472 VDLKEVVEKLKVG 484
+ +K + G
Sbjct: 792 MQIKNKMHSFVTG 804
Score = 121 bits (303), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 94/358 (26%), Positives = 162/358 (45%), Gaps = 41/358 (11%)
Query: 56 NAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALK 115
N++I AY N+ +PD G I G + +S + + R + G+ ++
Sbjct: 68 NSMIFAYCNNGMPDAGRSL-ADAISGGNLRTGTILLSGYARAGRVRDARR--VFDGMGVR 124
Query: 116 NGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHEL 175
N V + N+++ Y G + AR +F M RD+ SWN++++G+ S M A L
Sbjct: 125 NTVAW-----NAMVTCYVQNGDITLARKLFDAMPSRDVSSWNTMLTGYCHSQLMEEARNL 179
Query: 176 FDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARF 235
F+ MPERN VSW +MISGY G + +FR M+ G + SVL+A +
Sbjct: 180 FERMPERNGVSWTVMISGYVLIEQHGRAWDMFRTMLCEGMTPEQPNLVSVLSAVRHLGKP 239
Query: 236 NEGRSVHGYTVRTSLKPNIILDTALIDLYSK-CQKVEVAQRVFDSMADRNLVCWNAMILG 294
S+H +T + ++++ TA+++ Y+K ++ A + F+ MA RN W+ +I
Sbjct: 240 GILESIHVLVHKTGFERDVVVGTAILNGYTKDVNMLDSAVKFFEGMAARNEYTWSTIIAA 299
Query: 295 HCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDF 354
G+ ++ ++ +V R +LT +Y R ID
Sbjct: 300 LSQAGRIDDAFAVYQRDPLKSVPS------------------RTSMLTGLARYGR--IDD 339
Query: 355 YKI------KPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLS 406
KI +PN + M Y E+ +EAE++ +MP N +I W +++
Sbjct: 340 AKILFDQIHEPNVVSWNAMITGYMQNEMVDEAEDLFNRMPFRN------TISWAGMIA 391
Score = 111 bits (277), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 93/422 (22%), Positives = 191/422 (45%), Gaps = 31/422 (7%)
Query: 41 VLVFKCINNPGTFCVNAVIKAYSNSC-VPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAK 99
VLV K A++ Y+ + D V F+ M N YT+ ++ + ++
Sbjct: 247 VLVHKTGFERDVVVGTAILNGYTKDVNMLDSAVKFFEGMAAR----NEYTWSTIIAALSQ 302
Query: 100 TGCVERG-GMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNS 158
G ++ + LK+ +P S++ +G +D A+ +F Q+ +++SWN+
Sbjct: 303 AGRIDDAFAVYQRDPLKS-----VPSRTSMLTGLARYGRIDDAKILFDQIHEPNVVSWNA 357
Query: 159 IVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGN 218
+++G++++ + A +LF+ MP RN +SW MI+GY+++G +L + + + G +
Sbjct: 358 MITGYMQNEMVDEAEDLFNRMPFRNTISWAGMIAGYARNGRSEQALVSLQALHRKGMLPS 417
Query: 219 DKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFD 278
++ S AC G+ VH V+ + N + ALI LY K + + +++FD
Sbjct: 418 LSSLTSSFFACSNIEALETGKQVHSLAVKAGCQFNSYVCNALITLYGKYRSIGSVRQIFD 477
Query: 279 SMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRA 338
M ++ V +N+ + + +E +F + SPD +++ +I AC +A
Sbjct: 478 RMTVKDTVSYNSFMSALVQNNLFDEARDVFNNMP---------SPDVVSWTTIISACAQA 528
Query: 339 ELLTEGRKYFRQMIDFYKI--KPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSF 396
+ E + FR M+ ++ P ++ +L ++ I K+ D+ +
Sbjct: 529 DQGNEAVEIFRSMLHERELPNPPILTILLGLSGNLGAPQLGQQIHTIAIKLGMDSGLVVA 588
Query: 397 ESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRE 456
++ VS+ C ++ K F M+ +D + ++ YA G + R+ +
Sbjct: 589 NAL--VSMYFKCSSADSL-------KVFDSMEERDIFTWNTIITGYAQHGLGREAIRMYQ 639
Query: 457 LM 458
LM
Sbjct: 640 LM 641
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 63/265 (23%), Positives = 113/265 (42%), Gaps = 36/265 (13%)
Query: 43 VFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGC 102
VF + +P +I A + + ++ V + M+ +PN L G G
Sbjct: 506 VFNNMPSPDVVSWTTIISACAQADQGNEAVEIFRSMLHERELPNPPILTILLGLSGNLGA 565
Query: 103 VERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSG 162
+ G H +A+K G+D L V N+L++MY + D + +F M RD+ +WN+I
Sbjct: 566 PQLGQQIHTIAIKLGMDSGLVVANALVSMYFKCSSADSLK-VFDSMEERDIFTWNTI--- 621
Query: 163 HVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTM 222
I+GY++ G ++++++ M+ +G N+ T
Sbjct: 622 ----------------------------ITGYAQHGLGREAIRMYQLMVSAGVLPNEVTF 653
Query: 223 ASVLTACGRSARFNEGRS-VHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQR-VFDSM 280
+L AC S +EG + L P + ++DL + V+ A+ ++D
Sbjct: 654 VGLLHACSHSGLVDEGHQFFKSMSSDYGLTPLLEHYACMVDLLGRAGDVQGAEHFIYDMP 713
Query: 281 ADRNLVCWNAMILGHC-IHGKPEEG 304
+ + V W+A+ LG C IH E G
Sbjct: 714 IEPDSVIWSAL-LGACKIHKNVEIG 737
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 41/177 (23%), Positives = 73/177 (41%), Gaps = 33/177 (18%)
Query: 252 PNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTAL 311
P +A I + ++ A+ VFDSM R+++ WN+MI +C +G P+ G L A+
Sbjct: 31 PGTSAQSARIRELGRLGRLHEAREVFDSMPFRDIIAWNSMIFAYCNNGMPDAGRSLADAI 90
Query: 312 VNGTVAGGSI----------------------SPDEITFIGVICACVRAELLTEGRKYFR 349
G + G+I + + + ++ V+ +T RK F
Sbjct: 91 SGGNLRTGTILLSGYARAGRVRDARRVFDGMGVRNTVAWNAMVTCYVQNGDITLARKLFD 150
Query: 350 QMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLS 406
M + + + M Y ++L EEA + +MPE N + W ++S
Sbjct: 151 AMP-----SRDVSSWNTMLTGYCHSQLMEEARNLFERMPERN------GVSWTVMIS 196
>gi|222619002|gb|EEE55134.1| hypothetical protein OsJ_02921 [Oryza sativa Japonica Group]
Length = 493
Score = 232 bits (591), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 128/434 (29%), Positives = 214/434 (49%), Gaps = 43/434 (9%)
Query: 56 NAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALK 115
N +I Y +P++ + + QM K + T +++ +CA+TG ++ G +CH L +
Sbjct: 77 NTIIAGYIRGGMPNKALQSFHQMAKEQVRLDEVTLLNVLVACARTGAMKVGSLCHALVVL 136
Query: 116 NGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHEL 175
NG + + +SL++MY + G + A +
Sbjct: 137 NGFEINCYIGSSLVSMYA-------------------------------KCGMVEEARRV 165
Query: 176 FDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARF 235
F+ MPERNVV W MI+G ++SG ++ LFR+M +G + +D T+A+V+++CG+
Sbjct: 166 FNRMPERNVVCWTSMIAGCTQSGRFKEAVDLFRDMQIAGVKADDATIATVVSSCGQMGAL 225
Query: 236 NEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGH 295
+ GR +H Y L + + +LID+YSKC V A ++F + R++ W MI+G
Sbjct: 226 DLGRYLHAYCDGHGLGKELSVKNSLIDMYSKCGDVNKAYQIFHGLTKRDVFTWTVMIMGF 285
Query: 296 CIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFY 355
++G E + LF + + P+E+ F+GV+ AC L+ +G +F +M Y
Sbjct: 286 AMNGLCVEALDLFAQMEGED----KVMPNEVIFLGVLTACSHGGLVEQGYHHFHRMSKVY 341
Query: 356 KIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVA 415
+ P HY CM +L A+L EAE+ ++ MP D ++W SLL CR G V
Sbjct: 342 NLVPRIEHYGCMVDLLGRAKLLAEAEQFIKDMPVAPD-----VVVWRSLLFACRASGQVG 396
Query: 416 MVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLK 475
+ E A+ ++P+ + L NVYA +W DV VR M R + PGC +++
Sbjct: 397 LAEYAAERIEQLEPKRCGGHVLLSNVYATTLRWVDVNNVRTGMGNSRTSKKPGCSFIEVD 456
Query: 476 EVVEKLKVG---HF 486
+ + G HF
Sbjct: 457 GCIHEFFAGDESHF 470
Score = 118 bits (295), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 86/323 (26%), Positives = 149/323 (46%), Gaps = 35/323 (10%)
Query: 86 NSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMF 145
++Y+ + A+ ++ G H L+LK + + V+N+LINMY AR +
Sbjct: 4 DNYSLNIAISAAARVPSLDVGSQFHALSLKLSLASDSFVLNALINMYSSCNYPASAR-LV 62
Query: 146 VQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLK 205
+ +PR W S +VVSWN +I+GY + G P +L+
Sbjct: 63 LDSAPR----WAS------------------------DVVSWNTIIAGYIRGGMPNKALQ 94
Query: 206 LFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYS 265
F +M K R ++ T+ +VL AC R+ G H V + N + ++L+ +Y+
Sbjct: 95 SFHQMAKEQVRLDEVTLLNVLVACARTGAMKVGSLCHALVVLNGFEINCYIGSSLVSMYA 154
Query: 266 KCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDE 325
KC VE A+RVF+ M +RN+VCW +MI G G+ +E + LF + +AG + D+
Sbjct: 155 KCGMVEEARRVFNRMPERNVVCWTSMIAGCTQSGRFKEAVDLFRDM---QIAG--VKADD 209
Query: 326 ITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILR 385
T V+ +C + L GR Y D + + + + ++Y+ +A +I
Sbjct: 210 ATIATVVSSCGQMGALDLGR-YLHAYCDGHGLGKELSVKNSLIDMYSKCGDVNKAYQIFH 268
Query: 386 KMPEDNDNMSFESIMWVSLLSLC 408
+ + + IM ++ LC
Sbjct: 269 GLTKRDVFTWTVMIMGFAMNGLC 291
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 52/217 (23%), Positives = 97/217 (44%), Gaps = 18/217 (8%)
Query: 218 NDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVF 277
++ ++ ++A R + G H +++ SL + + ALI++YS C A+ V
Sbjct: 4 DNYSLNIAISAAARVPSLDVGSQFHALSLKLSLASDSFVLNALINMYSSCNYPASARLVL 63
Query: 278 DSMA--DRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICAC 335
DS ++V WN +I G+ G P + ++ F + A + DE+T + V+ AC
Sbjct: 64 DSAPRWASDVVSWNTIIAGYIRGGMPNKALQSFHQM-----AKEQVRLDEVTLLNVLVAC 118
Query: 336 VRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMS 395
R + G ++ + N + ++YA + EEA + +MPE N
Sbjct: 119 ARTGAMKVG-SLCHALVVLNGFEINCYIGSSLVSMYAKCGMVEEARRVFNRMPERN---- 173
Query: 396 FESIMWVSLLSLC----RFQGAVAMVERLAKSFVDMD 428
+ W S+++ C RF+ AV + + + V D
Sbjct: 174 --VVCWTSMIAGCTQSGRFKEAVDLFRDMQIAGVKAD 208
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 64/286 (22%), Positives = 111/286 (38%), Gaps = 44/286 (15%)
Query: 17 FFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYL 76
F N + +L+ A G + VF + C ++I + S + V +
Sbjct: 139 FEINCYIGSSLVSMYAKCGMVEEARRVFNRMPERNVVCWTSMIAGCTQSGRFKEAVDLFR 198
Query: 77 QMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFG 136
M G + T ++ SC + G ++ G H +G+ EL V NSLI+MY G
Sbjct: 199 DMQIAGVKADDATIATVVSSCGQMGALDLGRYLHAYCDGHGLGKELSVKNSLIDMYSKCG 258
Query: 137 AMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSK 196
++ A +F ++ RD+ +W +MI G++
Sbjct: 259 DVNKAYQIFHGLTKRDVFTW-------------------------------TVMIMGFAM 287
Query: 197 SGNPGCSLKLFREMMKSGFRGNDKTMAS------VLTACGRSARFNEG-RSVHGYTVRTS 249
+G +L LF +M G DK M + VLTAC +G H + +
Sbjct: 288 NGLCVEALDLFAQM-----EGEDKVMPNEVIFLGVLTACSHGGLVEQGYHHFHRMSKVYN 342
Query: 250 LKPNIILDTALIDLYSKCQKV-EVAQRVFDSMADRNLVCWNAMILG 294
L P I ++DL + + + E Q + D ++V W +++
Sbjct: 343 LVPRIEHYGCMVDLLGRAKLLAEAEQFIKDMPVAPDVVVWRSLLFA 388
>gi|297734304|emb|CBI15551.3| unnamed protein product [Vitis vinifera]
Length = 685
Score = 232 bits (591), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 126/398 (31%), Positives = 213/398 (53%), Gaps = 16/398 (4%)
Query: 88 YTFVSLFGSCAKTGCVERGG-MCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFV 146
+T+ ++ + G ++ + G+ KN V + N++I Y MD AR +F
Sbjct: 186 FTWTAMVSGYVQNGMLDEARRVFDGMPEKNSVSW-----NAIIAGYVQCKRMDQARELFE 240
Query: 147 QMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKL 206
M +++ SWN++++G+ ++GD++ A FD MP+R+ +SW +I+GY++SG +L L
Sbjct: 241 AMPCQNVSSWNTMITGYAQNGDIAQARNFFDRMPQRDSISWAAIIAGYAQSGYGEEALHL 300
Query: 207 FREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSK 266
F EM + G R N T S L+ C A G+ VHG V+ L+ + AL+ +Y K
Sbjct: 301 FVEMKRDGERLNRSTFTSTLSTCAEIAALELGKQVHGRVVKAGLESGCYVGNALLVMYCK 360
Query: 267 CQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEI 326
C ++ A VF+ + ++ +V WN MI G+ HG +E + LF ++ I PD++
Sbjct: 361 CGNIDDAYIVFEGIEEKEVVSWNTMIAGYARHGFGKEALMLFESMKK-----TGILPDDV 415
Query: 327 TFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRK 386
T +GV+ AC L+ +G +YF M Y I N HY CM +L A ++A+ +++
Sbjct: 416 TMVGVLSACSHTGLVDKGTEYFYSMTQDYGITANSKHYTCMIDLLGRAGRLDDAQNLMKN 475
Query: 387 MPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAG 446
MP + D + W +LL R G + E+ AK +M+P + Y L N+YA +G
Sbjct: 476 MPFEPD-----AATWGALLGASRIHGNTELGEKAAKMIFEMEPDNSGMYVLLSNLYAASG 530
Query: 447 QWEDVARVRELMKKRRMGRMPGCRLVDLKEVVEKLKVG 484
+W DV R+R M+ R + ++PG V+++ + VG
Sbjct: 531 RWGDVGRMRLRMRDRGVKKVPGYSWVEVQNKIHTFTVG 568
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 65/252 (25%), Positives = 116/252 (46%), Gaps = 33/252 (13%)
Query: 57 AVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKN 116
A+I Y+ S ++ + +++M ++G N TF S +CA+ +E G HG +K
Sbjct: 283 AIIAGYAQSGYGEEALHLFVEMKRDGERLNRSTFTSTLSTCAEIAALELGKQVHGRVVKA 342
Query: 117 GVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELF 176
G++ V N+L+ MY G +D A +F + ++++SWN++++G+ R
Sbjct: 343 GLESGCYVGNALLVMYCKCGNIDDAYIVFEGIEEKEVVSWNTMIAGYAR----------- 391
Query: 177 DIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFN 236
G+ K +L LF M K+G +D TM VL+AC + +
Sbjct: 392 ---------------HGFGKE-----ALMLFESMKKTGILPDDVTMVGVLSACSHTGLVD 431
Query: 237 EGRS-VHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMA-DRNLVCWNAMILG 294
+G + T + N T +IDL + +++ AQ + +M + + W A++
Sbjct: 432 KGTEYFYSMTQDYGITANSKHYTCMIDLLGRAGRLDDAQNLMKNMPFEPDAATWGALLGA 491
Query: 295 HCIHGKPEEGIK 306
IHG E G K
Sbjct: 492 SRIHGNTELGEK 503
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 65/238 (27%), Positives = 118/238 (49%), Gaps = 26/238 (10%)
Query: 121 ELPVMNS-----LINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHEL 175
E+P NS ++ Y G ++ AR +F + +LISWN ++ G+V+ + A +
Sbjct: 86 EMPCKNSISWNGMLAAYVQNGRIEDARRLFESKADWELISWNCMMGGYVKRNRLVDARGI 145
Query: 176 FDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREM-MKSGFRGNDKTMASVLTACGRSAR 234
FD MPER+ VSWN MISGY+++G + +LF E ++ F T ++++ ++
Sbjct: 146 FDRMPERDEVSWNTMISGYAQNGELLEAQRLFEESPVRDVF-----TWTAMVSGYVQNGM 200
Query: 235 FNEGRSV-HGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMIL 293
+E R V G + S+ N A+I Y +C++++ A+ +F++M +N+ WN MI
Sbjct: 201 LDEARRVFDGMPEKNSVSWN-----AIIAGYVQCKRMDQARELFEAMPCQNVSSWNTMIT 255
Query: 294 GHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQM 351
G+ +G + F + D I++ +I ++ E F +M
Sbjct: 256 GYAQNGDIAQARNFFDRMPQ---------RDSISWAAIIAGYAQSGYGEEALHLFVEM 304
Score = 88.2 bits (217), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 68/281 (24%), Positives = 131/281 (46%), Gaps = 34/281 (12%)
Query: 130 NMYGC--FGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSW 187
++ GC + + AR +F QM RD++SWN+++SG+ ++G + A E+FD MP +N +SW
Sbjct: 36 DLRGCVRYRNLRAARLLFDQMPERDVVSWNAMLSGYAQNGYVKEAKEIFDEMPCKNSISW 95
Query: 188 NIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVR 247
N M++ Y ++G + +LF D + S G + N G R
Sbjct: 96 NGMLAAYVQNGRIEDARRLFESKA-------DWELISWNCMMGGYVKRNRLVDARGIFDR 148
Query: 248 TSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKL 307
+ + +T +I Y++ ++ AQR+F+ R++ W AM+ G+ +G +E ++
Sbjct: 149 MPERDEVSWNT-MISGYAQNGELLEAQRLFEESPVRDVFTWTAMVSGYVQNGMLDEARRV 207
Query: 308 FTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKP--NFAHYW 365
F G + +++ +I V+ + + + R+ F M P N + +
Sbjct: 208 FD---------GMPEKNSVSWNAIIAGYVQCKRMDQARELFEAM-------PCQNVSSWN 251
Query: 366 CMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLS 406
M YA +A +MP+ + SI W ++++
Sbjct: 252 TMITGYAQNGDIAQARNFFDRMPQRD------SISWAAIIA 286
Score = 85.9 bits (211), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 65/274 (23%), Positives = 126/274 (45%), Gaps = 24/274 (8%)
Query: 42 LVFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGF--MP--NSYTFVSLFGSC 97
L+F + NA++ Y+ + Y++ K F MP NS ++ + +
Sbjct: 51 LLFDQMPERDVVSWNAMLSGYAQNG--------YVKEAKEIFDEMPCKNSISWNGMLAAY 102
Query: 98 AKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWN 157
+ G +E ++ D+EL N ++ Y + AR +F +M RD +SWN
Sbjct: 103 VQNGRIEDARRL----FESKADWELISWNCMMGGYVKRNRLVDARGIFDRMPERDEVSWN 158
Query: 158 SIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRG 217
+++SG+ ++G++ A LF+ P R+V +W M+SGY ++G + ++F M +
Sbjct: 159 TMISGYAQNGELLEAQRLFEESPVRDVFTWTAMVSGYVQNGMLDEARRVFDGMPEK---- 214
Query: 218 NDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVF 277
N + +++ + R ++ R + N+ +I Y++ + A+ F
Sbjct: 215 NSVSWNAIIAGYVQCKRMDQAREL----FEAMPCQNVSSWNTMITGYAQNGDIAQARNFF 270
Query: 278 DSMADRNLVCWNAMILGHCIHGKPEEGIKLFTAL 311
D M R+ + W A+I G+ G EE + LF +
Sbjct: 271 DRMPQRDSISWAAIIAGYAQSGYGEEALHLFVEM 304
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 42/189 (22%), Positives = 85/189 (44%), Gaps = 9/189 (4%)
Query: 35 GSPDYTVLVFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLF 94
G+ D +VF+ I N +I Y+ + ++ + M K G +P+ T V +
Sbjct: 362 GNIDDAYIVFEGIEEKEVVSWNTMIAGYARHGFGKEALMLFESMKKTGILPDDVTMVGVL 421
Query: 95 GSCAKTGCVERGG-MCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMS-PRD 152
+C+ TG V++G + + G+ +I++ G G +D A+N+ M D
Sbjct: 422 SACSHTGLVDKGTEYFYSMTQDYGITANSKHYTCMIDLLGRAGRLDDAQNLMKNMPFEPD 481
Query: 153 LISWNSI-----VSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLF 207
+W ++ + G+ G+ AA +F++ P+ N + ++ + Y+ SG G ++
Sbjct: 482 AATWGALLGASRIHGNTELGE-KAAKMIFEMEPD-NSGMYVLLSNLYAASGRWGDVGRMR 539
Query: 208 REMMKSGFR 216
M G +
Sbjct: 540 LRMRDRGVK 548
>gi|218188593|gb|EEC71020.1| hypothetical protein OsI_02714 [Oryza sativa Indica Group]
Length = 825
Score = 232 bits (591), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 132/470 (28%), Positives = 229/470 (48%), Gaps = 45/470 (9%)
Query: 6 QIQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSNS 65
I AH++ SG F ++ G+ +L F + P N ++ + +
Sbjct: 384 SIHAHIVKSG-FSRTKGVCDAIVGMYVKTGAVQDAILAFDLMQGPDIASWNTLLSGFYSG 442
Query: 66 CVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVM 125
+ G+ + ++I G + N YT+V + C + G H LK+G + V
Sbjct: 443 NNCEHGLRIFKELICEGVLANKYTYVGILRCCTSLMDLRFGCQVHACVLKSGFQGDYDVS 502
Query: 126 NSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVV 185
L++MY V++G + A +FD + ER+V
Sbjct: 503 KMLLDMY-------------------------------VQAGCFTNARLVFDRLKERDVF 531
Query: 186 SWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYT 245
SW +++S Y+K+ +++ FR M++ R ND T+A+ L+ C A G +H YT
Sbjct: 532 SWTVVMSTYAKTDEGEKAIECFRSMLRENKRPNDATLATSLSVCSDLACLGSGLQLHSYT 591
Query: 246 VRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGI 305
+++ +++ +AL+D+Y KC + A+ +FD +LV WN +I G+ HG + +
Sbjct: 592 IKSGWNSSVV-SSALVDMYVKCGNLADAEMLFDESDTHDLVEWNTIICGYAQHGHGYKAL 650
Query: 306 KLFTALVN-GTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHY 364
+ F +++ G V PDEITF+GV+ AC A LL EGR+YF+ + Y I P HY
Sbjct: 651 EAFQEMIDEGNV------PDEITFVGVLSACSHAGLLDEGRRYFKLLSSVYGITPTLEHY 704
Query: 365 WCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSF 424
CM ++ A A EAE ++ +MP ++ ++ +W ++L CR G + + ER A+
Sbjct: 705 ACMVDILAKAGKLAEAESLINEMP-----LTPDASLWKTILGACRMHGNIEIAERAAEKL 759
Query: 425 VDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDL 474
+ P D S L N+YA +W DVA++R ++ R + + PGC +++
Sbjct: 760 FESQPDDISSCILLSNIYADLKRWNDVAKLRSMLVDRGVKKEPGCSWIEI 809
Score = 92.0 bits (227), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 71/303 (23%), Positives = 132/303 (43%), Gaps = 37/303 (12%)
Query: 89 TFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQM 148
++ + CA + + RG H L++G + + +SL+NMY
Sbjct: 62 SYAAALQGCAASRALRRGKALHARLLRSGPRPDAFLHDSLLNMY---------------- 105
Query: 149 SPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFR 208
+ G ++ A +FD MP R+VV+W M+S + +G+ G +L+LF
Sbjct: 106 ---------------CKCGRLADARSVFDGMPHRDVVAWTAMVSAITAAGDAGAALRLFA 150
Query: 209 EMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQ 268
EM + G N +A+ L AC + VH V+ + + ++L++ Y C
Sbjct: 151 EMSEEGVVPNGFALAAALKACTVGSDLGFTPQVHAQAVKLEGLFDPYVSSSLVEAYVSCG 210
Query: 269 KVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITF 328
+V+VA+R R+ V WNA++ + G + + +F LV +G IS + T
Sbjct: 211 EVDVAERALLDSPVRSDVSWNALLNEYARDGDYAKVMLVFDKLVE---SGDEIS--KYTL 265
Query: 329 IGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMP 388
V+ C+ L G+ +I ++ + C+ +Y+ E+A E+ ++
Sbjct: 266 PTVLKCCMELGLAKSGQAVHGLVIK-RGLETDRVLNNCLIEMYSKCLSAEDAYEVFARID 324
Query: 389 EDN 391
E +
Sbjct: 325 EPD 327
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 62/283 (21%), Positives = 122/283 (43%), Gaps = 40/283 (14%)
Query: 56 NAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALK 115
NA++ Y+ + ++ + +++++G + YT ++ C + G + G HGL +K
Sbjct: 231 NALLNEYARDGDYAKVMLVFDKLVESGDEISKYTLPTVLKCCMELGLAKSGQAVHGLVIK 290
Query: 116 NGVDFELPVMNSLINMYG-CFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHE 174
G++ + + N LI MY C A D A+E
Sbjct: 291 RGLETDRVLNNCLIEMYSKCLSAED--------------------------------AYE 318
Query: 175 LFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSAR 234
+F + E +VV ++MIS + + + +F +M G + N T + R+
Sbjct: 319 VFARIDEPDVVHCSLMISCFDRHDMAPEAFDIFMQMSDMGVKPNQYTFVGLAIVASRTGD 378
Query: 235 FNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILG 294
N RS+H + V++ + A++ +Y K V+ A FD M ++ WN ++ G
Sbjct: 379 VNLCRSIHAHIVKSGFSRTKGVCDAIVGMYVKTGAVQDAILAFDLMQGPDIASWNTLLSG 438
Query: 295 HCIHGKPEEGIKLFTALV-NGTVAGGSISPDEITFIGVICACV 336
E G+++F L+ G +A ++ T++G++ C
Sbjct: 439 FYSGNNCEHGLRIFKELICEGVLA------NKYTYVGILRCCT 475
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 60/282 (21%), Positives = 120/282 (42%), Gaps = 36/282 (12%)
Query: 56 NAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALK 115
A++ A + + + + +M + G +PN + + +C +
Sbjct: 130 TAMVSAITAAGDAGAALRLFAEMSEEGVVPNGFALAAALKACT---------------VG 174
Query: 116 NGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHEL 175
+ + F V + + G F D +S+V +V G++ A
Sbjct: 175 SDLGFTPQVHAQAVKLEGLF----------------DPYVSSSLVEAYVSCGEVDVAERA 218
Query: 176 FDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARF 235
P R+ VSWN +++ Y++ G+ + +F ++++SG + T+ +VL C
Sbjct: 219 LLDSPVRSDVSWNALLNEYARDGDYAKVMLVFDKLVESGDEISKYTLPTVLKCCMELGLA 278
Query: 236 NEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGH 295
G++VHG ++ L+ + +L+ LI++YSKC E A VF + + ++V + MI
Sbjct: 279 KSGQAVHGLVIKRGLETDRVLNNCLIEMYSKCLSAEDAYEVFARIDEPDVVHCSLMISCF 338
Query: 296 CIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVR 337
H E +F + + V P++ TF+G+ R
Sbjct: 339 DRHDMAPEAFDIFMQMSDMGV-----KPNQYTFVGLAIVASR 375
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 59/270 (21%), Positives = 110/270 (40%), Gaps = 31/270 (11%)
Query: 43 VFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGC 102
VF I+ P + +I + + + ++QM G PN YTFV L ++TG
Sbjct: 319 VFARIDEPDVVHCSLMISCFDRHDMAPEAFDIFMQMSDMGVKPNQYTFVGLAIVASRTGD 378
Query: 103 VERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSG 162
V H +K+G V ++++ MY GA+ A F M D+ SWN+
Sbjct: 379 VNLCRSIHAHIVKSGFSRTKGVCDAIVGMYVKTGAVQDAILAFDLMQGPDIASWNT---- 434
Query: 163 HVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTM 222
++SG+ N L++F+E++ G N T
Sbjct: 435 ---------------------------LLSGFYSGNNCEHGLRIFKELICEGVLANKYTY 467
Query: 223 ASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMAD 282
+L C G VH +++ + + + L+D+Y + A+ VFD + +
Sbjct: 468 VGILRCCTSLMDLRFGCQVHACVLKSGFQGDYDVSKMLLDMYVQAGCFTNARLVFDRLKE 527
Query: 283 RNLVCWNAMILGHCIHGKPEEGIKLFTALV 312
R++ W ++ + + E+ I+ F +++
Sbjct: 528 RDVFSWTVVMSTYAKTDEGEKAIECFRSML 557
Score = 61.6 bits (148), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 52/101 (51%), Gaps = 1/101 (0%)
Query: 220 KTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDS 279
++ A+ L C S G+++H +R+ +P+ L +L+++Y KC ++ A+ VFD
Sbjct: 61 RSYAAALQGCAASRALRRGKALHARLLRSGPRPDAFLHDSLLNMYCKCGRLADARSVFDG 120
Query: 280 MADRNLVCWNAMILGHCIHGKPEEGIKLFTALV-NGTVAGG 319
M R++V W AM+ G ++LF + G V G
Sbjct: 121 MPHRDVVAWTAMVSAITAAGDAGAALRLFAEMSEEGVVPNG 161
>gi|357150569|ref|XP_003575504.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g29230-like [Brachypodium distachyon]
Length = 548
Score = 232 bits (591), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 147/517 (28%), Positives = 251/517 (48%), Gaps = 50/517 (9%)
Query: 6 QIQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCI--NNPGTFCVNAVIKAYS 63
Q+ A L+ GL + + L+ S+ SP Y +F + + + A + +Y+
Sbjct: 26 QLHAQLLLRGLPLP-ARAAVTLIASSS---SPQYARAIFDSVPAASANVYLWTATVSSYA 81
Query: 64 NSCVPD---QGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDF 120
P + ++ M+++G PN +T S+ S +K + HG +K G+
Sbjct: 82 KHASPALAAEAFPLFMFMLRSGPRPNGFTVSSVLKSLSKLRAAHQVCQVHGFLVKAGLAS 141
Query: 121 ELPVMNSLINMYGCF-------------------------------GAMDCARNMFVQMS 149
L V +L++ YG G ++ AR +F M
Sbjct: 142 SLHVGATLLDSYGNLCRVKDARRVFDEMPRSNVVVGNAMVSGYVKAGDVEAARQVFDGMV 201
Query: 150 PRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFRE 209
RD ISWN+++SG++R GD A +LFD MP+RNV SWN+MIS S+ G S+ +F +
Sbjct: 202 ERDSISWNTLMSGYLRRGDAGLARDLFDEMPQRNVNSWNMMISACSEVGLWADSVAVFNQ 261
Query: 210 MMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQK 269
M FR + TMA +++AC + + R V+G + ++ N + +L+D+++KC
Sbjct: 262 MRFMSFRPDAATMAVLMSACAQLGFLSVARQVYGLLRKGCVEMNCHVHNSLVDMFAKCGC 321
Query: 270 VEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFI 329
A +F M +++V +N M+ HG ++ +KLF ++ G + PD +TF+
Sbjct: 322 FSEAHLLFAEMDPKDVVSYNVMVSALAHHGHGKDALKLFEQMIE-----GGLQPDAVTFL 376
Query: 330 GVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPE 389
GV+ AC A L+ G+ YF M Y I+ + HY CM +LY L EEA ++ MP
Sbjct: 377 GVLSACAHAGLVDSGKYYFETMGTTYAIEKSADHYACMVDLYGRVGLIEEAHYFVKIMP- 435
Query: 390 DNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWE 449
+ + +W +LL+ CR + + E A+ + ++P + Y L N A + QW+
Sbjct: 436 ----VKPHAGIWGALLNACRKHCNIDVGEVAARELIRIEPMNPGNYVLLSNTLAWSQQWD 491
Query: 450 DVARVRELMKKRRMGRMPGCRLVDLKEVVEKLKVGHF 486
V VR+LM+ + + G V+++ VV + +G F
Sbjct: 492 AVGDVRQLMRGNGIDKNTGFSWVEVESVVHEFLMGDF 528
>gi|449523792|ref|XP_004168907.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g11290-like [Cucumis sativus]
Length = 821
Score = 231 bits (590), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 128/450 (28%), Positives = 226/450 (50%), Gaps = 41/450 (9%)
Query: 35 GSPDYTVLVFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLF 94
GS + L+F ++ N+++ Y + P++ + + +M++ G P T +
Sbjct: 297 GSVETARLIFDGMDQKTVVSWNSMMDGYVQNGEPEKAIAVFEKMLEEGIDPTGVTIMEAL 356
Query: 95 GSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLI 154
+CA G +ERG H + + ++ VMNSLI+MY C R
Sbjct: 357 HACADLGDLERGKFVHKFVDQLNLGSDISVMNSLISMYS-----KCKR------------ 399
Query: 155 SWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSG 214
+ A ++F+ + R VSWN MI GY+++G +L F EM G
Sbjct: 400 --------------VDIASDIFNNLNGRTHVSWNAMILGYAQNGRVSEALNCFSEMKSLG 445
Query: 215 FRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQ 274
+ + TM SV+ A + + +HG +R+ L NI + TAL+D+YSKC + +A+
Sbjct: 446 MKPDSFTMVSVIPALAELSVTRHAKWIHGLIIRSCLDKNIFVTTALVDMYSKCGAIHMAR 505
Query: 275 RVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICA 334
++FD ++DR+++ WNAMI G+ HG + LF + G++ P++IT++ VI A
Sbjct: 506 KLFDMISDRHVITWNAMIDGYGTHGLGRAALDLFDKM-----KKGAVEPNDITYLSVISA 560
Query: 335 CVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNM 394
C + L+ EG ++F+ M Y ++P+ HY M +L A +EA + + MP +
Sbjct: 561 CSHSGLVDEGLRHFKSMKQDYGLEPSMDHYGAMVDLLGRAGRIKEAWDFIENMP-----I 615
Query: 395 SFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARV 454
S ++ ++L C+ + + E+ AK +++P + + L N+YA +W VA V
Sbjct: 616 SPGITVYGAMLGACKIHKNIEVGEKAAKKLFELNPDEGGYHVLLANIYASTSKWSKVAEV 675
Query: 455 RELMKKRRMGRMPGCRLVDLKEVVEKLKVG 484
R+ M+K+ + + PGC +V+L+ V G
Sbjct: 676 RKTMEKKGLKKTPGCSVVELRNEVHSFYSG 705
Score = 157 bits (396), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 99/387 (25%), Positives = 179/387 (46%), Gaps = 38/387 (9%)
Query: 1 MKQLLQIQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIK 60
MK+L QI +I +GL+ N + L+ + +GS + VF+ I++ + ++K
Sbjct: 62 MKELHQIIPLVIKNGLY-NEHLFQTKLVSLFSKYGSINEAARVFEPIDDKLDALYHTMLK 120
Query: 61 AYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDF 120
Y+ + + + F +M + P Y F L C ++RG HG + N
Sbjct: 121 GYAKNSSLETALAFLCRMRYDDVKPVVYNFTYLLKVCGDNADLKRGKEIHGQLITNSFAA 180
Query: 121 ELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMP 180
+ M ++NMY + + A+++FD MP
Sbjct: 181 NVFAMTGVVNMYA-------------------------------KCRQIDDAYKMFDRMP 209
Query: 181 ERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRS 240
ER++VSWN +I+G+S++G +L+L M G R + T+ +VL A G+S
Sbjct: 210 ERDLVSWNTIIAGFSQNGFAKKALELVLRMQDEGQRPDSITLVTVLPAAADVGLLMVGKS 269
Query: 241 VHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGK 300
+HGY +R + + TAL D+YSKC VE A+ +FD M + +V WN+M+ G+ +G+
Sbjct: 270 IHGYAIRAGFAKLVNISTALADMYSKCGSVETARLIFDGMDQKTVVSWNSMMDGYVQNGE 329
Query: 301 PEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPN 360
PE+ I +F ++ I P +T + + AC L G K+ + +D + +
Sbjct: 330 PEKAIAVFEKMLE-----EGIDPTGVTIMEALHACADLGDLERG-KFVHKFVDQLNLGSD 383
Query: 361 FAHYWCMANLYAGAELTEEAEEILRKM 387
+ + ++Y+ + + A +I +
Sbjct: 384 ISVMNSLISMYSKCKRVDIASDIFNNL 410
Score = 129 bits (325), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 92/353 (26%), Positives = 160/353 (45%), Gaps = 40/353 (11%)
Query: 1 MKQLLQIQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIK 60
+K+ +I LIT+ F N F ++ A D +F + N +I
Sbjct: 163 LKRGKEIHGQLITNS-FAANVFAMTGVVNMYAKCRQIDDAYKMFDRMPERDLVSWNTIIA 221
Query: 61 AYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDF 120
+S + + + L+M G P+S T V++ + A G + G HG A++ G
Sbjct: 222 GFSQNGFAKKALELVLRMQDEGQRPDSITLVTVLPAAADVGLLMVGKSIHGYAIRAGFAK 281
Query: 121 ELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMP 180
+ + +L +MY G+++ AR +FD M
Sbjct: 282 LVNISTALADMYSKCGSVETAR-------------------------------LIFDGMD 310
Query: 181 ERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRS 240
++ VVSWN M+ GY ++G P ++ +F +M++ G T+ L AC G+
Sbjct: 311 QKTVVSWNSMMDGYVQNGEPEKAIAVFEKMLEEGIDPTGVTIMEALHACADLGDLERGKF 370
Query: 241 VHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGK 300
VH + + +L +I + +LI +YSKC++V++A +F+++ R V WNAMILG+ +G+
Sbjct: 371 VHKFVDQLNLGSDISVMNSLISMYSKCKRVDIASDIFNNLNGRTHVSWNAMILGYAQNGR 430
Query: 301 PEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAEL-LTEGRKYFRQMI 352
E + F+ + + PD T + VI A AEL +T K+ +I
Sbjct: 431 VSEALNCFSEM-----KSLGMKPDSFTMVSVIPAL--AELSVTRHAKWIHGLI 476
Score = 88.2 bits (217), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 64/276 (23%), Positives = 126/276 (45%), Gaps = 24/276 (8%)
Query: 159 IVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGN 218
+VS + G ++ A +F+ + ++ ++ M+ GY+K+ + +L M +
Sbjct: 87 LVSLFSKYGSINEAARVFEPIDDKLDALYHTMLKGYAKNSSLETALAFLCRMRYDDVKPV 146
Query: 219 DKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFD 278
+L CG +A G+ +HG + S N+ T ++++Y+KC++++ A ++FD
Sbjct: 147 VYNFTYLLKVCGDNADLKRGKEIHGQLITNSFAANVFAMTGVVNMYAKCRQIDDAYKMFD 206
Query: 279 SMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRA 338
M +R+LV WN +I G +G ++ ++L + + PD IT + V+ A
Sbjct: 207 RMPERDLVSWNTIIAGFSQNGFAKKALELVLRMQD-----EGQRPDSITLVTVLPAAADV 261
Query: 339 ELLTEGRKYFRQMIDFYKIKPNFAHY----WCMANLYAGAELTEEAEEILRKMPEDNDNM 394
LL G+ I Y I+ FA +A++Y+ E A I M +
Sbjct: 262 GLLMVGKS-----IHGYAIRAGFAKLVNISTALADMYSKCGSVETARLIFDGMDQKT--- 313
Query: 395 SFESIMWVSLLSLCRFQG----AVAMVERLAKSFVD 426
+ W S++ G A+A+ E++ + +D
Sbjct: 314 ---VVSWNSMMDGYVQNGEPEKAIAVFEKMLEEGID 346
Score = 41.6 bits (96), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 53/235 (22%), Positives = 98/235 (41%), Gaps = 30/235 (12%)
Query: 11 LITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSNSCVPDQ 70
LI N F T L+ + G+ +F I++ NA+I Y +
Sbjct: 475 LIIRSCLDKNIFVTTALVDMYSKCGAIHMARKLFDMISDRHVITWNAMIDGYGTHGLGRA 534
Query: 71 GVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMN---S 127
+ + +M K PN T++S+ +C+ +G V+ G+ H ++K E P M+ +
Sbjct: 535 ALDLFDKMKKGAVEPNDITYLSVISACSHSGLVDE-GLRHFKSMKQDYGLE-PSMDHYGA 592
Query: 128 LINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSG------HVRSGDMSAAHELFDIMPE 181
++++ G G + A + M I+ + G ++ G+ AA +LF++ P+
Sbjct: 593 MVDLLGRAGRIKEAWDFIENMPISPGITVYGAMLGACKIHKNIEVGE-KAAKKLFELNPD 651
Query: 182 R---NVVSWNIM--ISGYSKSG-------------NPGCSLKLFREMMKSGFRGN 218
+V+ NI S +SK PGCS+ R + S + G+
Sbjct: 652 EGGYHVLLANIYASTSKWSKVAEVRKTMEKKGLKKTPGCSVVELRNEVHSFYSGS 706
>gi|328774757|gb|AEB39778.1| pentatricopeptide repeat protein 77 [Funaria hygrometrica]
Length = 1161
Score = 231 bits (590), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 134/476 (28%), Positives = 231/476 (48%), Gaps = 42/476 (8%)
Query: 6 QIQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSNS 65
QI +I SGL + + L+ GS VF + + A+I +++
Sbjct: 608 QIHMLIIESGLQLDVNLGNA-LINMYIRCGSLQDAYEVFHSLRHRNVMSWTAMIGGFADQ 666
Query: 66 CVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVM 125
+ + QM +GF P TF S+ +C + C++ G L +G + + V
Sbjct: 667 GEDRKAFELFWQMQNDGFKPVKSTFSSILKACMSSACLDEGKKVIAHILNSGYELDTGVG 726
Query: 126 NSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVV 185
N+LI+ Y +SG M+ A ++FD MP R+++
Sbjct: 727 NALISAYS-------------------------------KSGSMTDARKVFDKMPNRDIM 755
Query: 186 SWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYT 245
SWN MI+GY+++G G +L+ +M + G N + S+L AC + EG+ VH
Sbjct: 756 SWNKMIAGYAQNGLGGTALQFAYQMQEQGVVLNKFSFVSILNACSSFSALEEGKRVHAEI 815
Query: 246 VRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGI 305
V+ ++ ++ + ALI +Y+KC +E AQ VFD+ ++N+V WNAMI + HG + +
Sbjct: 816 VKRKMQGDVRVGAALISMYAKCGSLEEAQEVFDNFTEKNVVTWNAMINAYAQHGLASKAL 875
Query: 306 KLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYW 365
F + I PD TF ++ AC + L+ EG + F + + + P HY
Sbjct: 876 DFFNCMDK-----EGIKPDGSTFTSILSACNHSGLVMEGNRIFSSLESQHGLSPTIEHYG 930
Query: 366 CMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFV 425
C+ L A +EAE ++ +MP D + +W +LL CR G VA+ E A + +
Sbjct: 931 CLVGLLGRAGRFQEAETLINQMPFPPD-----AAVWETLLGACRIHGNVALAEHAANNAL 985
Query: 426 DMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLKEVVEKL 481
++ ++ + Y L NVYA AG+W+DVA++R +M+ R + + PG +++ ++ +
Sbjct: 986 KLNARNPAVYVLLSNVYAAAGRWDDVAKIRRVMEGRGIRKEPGRSWIEVDNIIHEF 1041
Score = 155 bits (391), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 92/337 (27%), Positives = 165/337 (48%), Gaps = 39/337 (11%)
Query: 56 NAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALK 115
NA+I A + ++ Y QM +G + N T++S+ +C+ + + G + H +
Sbjct: 354 NALIAALAQHGHYEEAFEQYYQMRSDGVVMNRTTYLSVLNACSTSKALGAGELIHSHISE 413
Query: 116 NGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHEL 175
G ++ + NSLI+MY R GD+ A EL
Sbjct: 414 VGHSSDVQIGNSLISMYA-------------------------------RCGDLPRAREL 442
Query: 176 FDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARF 235
F+ MP+R+++SWN +I+GY++ + G ++KL+++M G + T +L+AC S+ +
Sbjct: 443 FNTMPKRDLISWNAIIAGYARREDRGEAMKLYKQMQSEGVKPGRVTFLHLLSACTNSSAY 502
Query: 236 NEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGH 295
++G+ +H +R+ +K N L AL+++Y +C + AQ VF+ R+++ WN+MI GH
Sbjct: 503 SDGKMIHEDILRSGIKSNGHLANALMNMYRRCGSIMEAQNVFEGTRARDIISWNSMIAGH 562
Query: 296 CIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDF- 354
HG E KLF + + PD+ITF V+ C E L GR+ +I+
Sbjct: 563 AQHGSYEAAYKLFLEMKK-----EGLEPDKITFASVLVGCKNPEALELGRQIHMLIIESG 617
Query: 355 YKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDN 391
++ N + + N+Y ++A E+ + N
Sbjct: 618 LQLDVNLGN--ALINMYIRCGSLQDAYEVFHSLRHRN 652
Score = 139 bits (349), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 91/346 (26%), Positives = 158/346 (45%), Gaps = 40/346 (11%)
Query: 56 NAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALK 115
NA+I Y+ + + Y QM G P TF+ L +C + G M H L+
Sbjct: 455 NAIIAGYARREDRGEAMKLYKQMQSEGVKPGRVTFLHLLSACTNSSAYSDGKMIHEDILR 514
Query: 116 NGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHEL 175
+G+ + N+L+NMY R G + A +
Sbjct: 515 SGIKSNGHLANALMNMY-------------------------------RRCGSIMEAQNV 543
Query: 176 FDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARF 235
F+ R+++SWN MI+G+++ G+ + KLF EM K G + T ASVL C
Sbjct: 544 FEGTRARDIISWNSMIAGHAQHGSYEAAYKLFLEMKKEGLEPDKITFASVLVGCKNPEAL 603
Query: 236 NEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGH 295
GR +H + + L+ ++ L ALI++Y +C ++ A VF S+ RN++ W AMI G
Sbjct: 604 ELGRQIHMLIIESGLQLDVNLGNALINMYIRCGSLQDAYEVFHSLRHRNVMSWTAMIGGF 663
Query: 296 CIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDF- 354
G+ + +LF + N P + TF ++ AC+ + L EG+K +++
Sbjct: 664 ADQGEDRKAFELFWQMQN-----DGFKPVKSTFSSILKACMSSACLDEGKKVIAHILNSG 718
Query: 355 YKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIM 400
Y++ + + + Y+ + +A ++ KMP + D MS+ ++
Sbjct: 719 YELDTGVGN--ALISAYSKSGSMTDARKVFDKMP-NRDIMSWNKMI 761
Score = 115 bits (288), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 72/280 (25%), Positives = 130/280 (46%), Gaps = 41/280 (14%)
Query: 79 IKNGFMP-----NSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYG 133
+ N + P N +V L +C + + H ++ GV ++ + N LINMY
Sbjct: 69 LSNAYQPRPTETNRAAYVDLVQNCTRKRSLAEAKRIHAQMVEAGVGPDIFLSNLLINMY- 127
Query: 134 CFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISG 193
V+ +S AH++F MP R+V+SWN +IS
Sbjct: 128 ------------------------------VKCRSVSDAHQVFLKMPRRDVISWNSLISC 157
Query: 194 YSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPN 253
Y++ G + +LF EM +GF + T S+LTAC A G+ +H + + +
Sbjct: 158 YAQQGFKKKAFQLFEEMQTAGFIPSKITYISILTACCSPAELEYGKKIHSKIIEAGYQRD 217
Query: 254 IILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVN 313
+ +L+++Y KC+ + A++VF + R++V +N M+ + EE I LF
Sbjct: 218 PRVQNSLLNMYGKCEDLPSARQVFSGIYRRDVVSYNTMLGLYAQKAYVEECIGLF----- 272
Query: 314 GTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMID 353
G ++ I PD++T+I ++ A +L EG++ + ++
Sbjct: 273 GQMSSEGIPPDKVTYINLLDAFTTPSMLDEGKRIHKLAVN 312
Score = 111 bits (277), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 66/303 (21%), Positives = 133/303 (43%), Gaps = 36/303 (11%)
Query: 43 VFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGC 102
VF I N ++ Y+ ++ + + QM G P+ T+++L +
Sbjct: 240 VFSGIYRRDVVSYNTMLGLYAQKAYVEECIGLFGQMSSEGIPPDKVTYINLLDAFTTPSM 299
Query: 103 VERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSG 162
++ G H LA+ G++ ++ V +L M+
Sbjct: 300 LDEGKRIHKLAVNEGLNSDIRVGTALATMF------------------------------ 329
Query: 163 HVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTM 222
VR GD++ A + + +R+VV +N +I+ ++ G+ + + + +M G N T
Sbjct: 330 -VRCGDVAGAKQALEAFADRDVVVYNALIAALAQHGHYEEAFEQYYQMRSDGVVMNRTTY 388
Query: 223 ASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMAD 282
SVL AC S G +H + ++ + +LI +Y++C + A+ +F++M
Sbjct: 389 LSVLNACSTSKALGAGELIHSHISEVGHSSDVQIGNSLISMYARCGDLPRARELFNTMPK 448
Query: 283 RNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLT 342
R+L+ WNA+I G+ E +KL+ + + V P +TF+ ++ AC + +
Sbjct: 449 RDLISWNAIIAGYARREDRGEAMKLYKQMQSEGV-----KPGRVTFLHLLSACTNSSAYS 503
Query: 343 EGR 345
+G+
Sbjct: 504 DGK 506
Score = 105 bits (263), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 69/289 (23%), Positives = 129/289 (44%), Gaps = 36/289 (12%)
Query: 56 NAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALK 115
N++I Y+ + + +M GF+P+ T++S+ +C +E G H ++
Sbjct: 152 NSLISCYAQQGFKKKAFQLFEEMQTAGFIPSKITYISILTACCSPAELEYGKKIHSKIIE 211
Query: 116 NGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHEL 175
G + V NSL+NMYG + D+ +A ++
Sbjct: 212 AGYQRDPRVQNSLLNMYG-------------------------------KCEDLPSARQV 240
Query: 176 FDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARF 235
F + R+VVS+N M+ Y++ + LF +M G + T ++L A +
Sbjct: 241 FSGIYRRDVVSYNTMLGLYAQKAYVEECIGLFGQMSSEGIPPDKVTYINLLDAFTTPSML 300
Query: 236 NEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGH 295
+EG+ +H V L +I + TAL ++ +C V A++ ++ ADR++V +NA+I
Sbjct: 301 DEGKRIHKLAVNEGLNSDIRVGTALATMFVRCGDVAGAKQALEAFADRDVVVYNALIAAL 360
Query: 296 CIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEG 344
HG EE + + + + V + T++ V+ AC ++ L G
Sbjct: 361 AQHGHYEEAFEQYYQMRSDGVV-----MNRTTYLSVLNACSTSKALGAG 404
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 58/245 (23%), Positives = 105/245 (42%), Gaps = 21/245 (8%)
Query: 218 NDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVF 277
N ++ C R E + +H V + P+I L LI++Y KC+ V A +VF
Sbjct: 81 NRAAYVDLVQNCTRKRSLAEAKRIHAQMVEAGVGPDIFLSNLLINMYVKCRSVSDAHQVF 140
Query: 278 DSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVR 337
M R+++ WN++I + G ++ +LF + AG P +IT+I ++ AC
Sbjct: 141 LKMPRRDVISWNSLISCYAQQGFKKKAFQLFEEM---QTAG--FIPSKITYISILTACCS 195
Query: 338 AELLTEGRKYFRQMIDF-YKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSF 396
L G+K ++I+ Y+ P + + N+Y E A ++ + D +S+
Sbjct: 196 PAELEYGKKIHSKIIEAGYQRDPRVQN--SLLNMYGKCEDLPSARQVFSGIYR-RDVVSY 252
Query: 397 ESIMWVSLLSLCRFQGAVAMVERLAKSFVDMD----PQDFSRYQFLLNVYAVAGQWEDVA 452
+++ + A VE F M P D Y LL+ + ++
Sbjct: 253 NTMLGL--------YAQKAYVEECIGLFGQMSSEGIPPDKVTYINLLDAFTTPSMLDEGK 304
Query: 453 RVREL 457
R+ +L
Sbjct: 305 RIHKL 309
>gi|222631044|gb|EEE63176.1| hypothetical protein OsJ_17985 [Oryza sativa Japonica Group]
Length = 745
Score = 231 bits (590), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 135/435 (31%), Positives = 219/435 (50%), Gaps = 37/435 (8%)
Query: 56 NAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALK 115
AVI YS + + + QMI +G +PN T +S+ +CA G +G H +LK
Sbjct: 225 TAVIAGYSQRGCSHEALNVFRQMIFSGSLPNCVTIISVLSACASLGAFSQGMEIHAYSLK 284
Query: 116 NGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHEL 175
N L+ + FG D DL+ +N+++ + + AA +
Sbjct: 285 N----------CLLTLDNDFGGED-----------EDLMVYNALIDMYSKCRSFKAARSI 323
Query: 176 FDIMP--ERNVVSWNIMISGYSKSGNPGCSLKLFREMMKS--GFRGNDKTMASVLTACGR 231
FD +P ERNVV+W +MI G+++ G+ +LKLF EM+ G N T++ +L AC
Sbjct: 324 FDDIPLEERNVVTWTVMIGGHAQYGDSNDALKLFVEMISEPYGVAPNAYTISCILMACAH 383
Query: 232 SARFNEGRSVHGYTVRTSLKPN--IILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWN 289
A G+ +H Y +R + + LI++YSKC V+ A+ VFDSM+ ++ + W
Sbjct: 384 LAAIRIGKQIHAYVLRHHQYDSSAYFVANCLINMYSKCGDVDTARHVFDSMSQKSAISWT 443
Query: 290 AMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFR 349
+M+ G+ +HG+ E + +F + PD+ITF+ V+ AC ++ +G YF
Sbjct: 444 SMMTGYGMHGRGSEALDIFDKMRKA-----GFVPDDITFLVVLYACSHCGMVDQGLSYFD 498
Query: 350 QMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCR 409
M Y + P HY +L A ++A + ++ MP M +++WV+LLS CR
Sbjct: 499 SMSADYGLTPRAEHYAYAIDLLARFGRLDKAWKTVKDMP-----MEPTAVVWVALLSACR 553
Query: 410 FQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGC 469
V + E V+M+ ++ Y + N+YA AG+W+DVAR+R LMKK + + PGC
Sbjct: 554 VHSNVELAEHALNKLVEMNAENDGSYTLISNIYATAGRWKDVARIRHLMKKSGIKKRPGC 613
Query: 470 RLVDLKEVVEKLKVG 484
V ++ VG
Sbjct: 614 SWVQGQKGTASFFVG 628
Score = 161 bits (408), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 106/378 (28%), Positives = 199/378 (52%), Gaps = 39/378 (10%)
Query: 89 TFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQM 148
+ V++ +C V + HG A++NG ++ V N+LI+ Y G M+ A +F M
Sbjct: 122 SIVNILPACGSLKAVPQTKEVHGNAIRNGTFLDVFVGNALIDAYAKCGLMENAVKVFNMM 181
Query: 149 SPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNV----VSWNIMISGYSKSGNPGCSL 204
+D++SWN++V+G+ +SG+ AA ELF M + N+ V+W +I+GYS+ G +L
Sbjct: 182 EFKDVVSWNAMVAGYSQSGNFKAAFELFKNMRKENIPLDMVTWTAVIAGYSQRGCSHEAL 241
Query: 205 KLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSL----------KPNI 254
+FR+M+ SG N T+ SVL+AC F++G +H Y+++ L ++
Sbjct: 242 NVFRQMIFSGSLPNCVTIISVLSACASLGAFSQGMEIHAYSLKNCLLTLDNDFGGEDEDL 301
Query: 255 ILDTALIDLYSKCQKVEVAQRVFDS--MADRNLVCWNAMILGHCIHGKPEEGIKLFTALV 312
++ ALID+YSKC+ + A+ +FD + +RN+V W MI GH +G + +KLF ++
Sbjct: 302 MVYNALIDMYSKCRSFKAARSIFDDIPLEERNVVTWTVMIGGHAQYGDSNDALKLFVEMI 361
Query: 313 NGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYW--CMANL 370
+ ++P+ T ++ AC + G++ ++ ++ + A++ C+ N+
Sbjct: 362 SEPYG---VAPNAYTISCILMACAHLAAIRIGKQIHAYVLRHHQYDSS-AYFVANCLINM 417
Query: 371 YAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQG----AVAMVERLAKS-FV 425
Y+ + A + M + + +I W S+++ G A+ + +++ K+ FV
Sbjct: 418 YSKCGDVDTARHVFDSMSQKS------AISWTSMMTGYGMHGRGSEALDIFDKMRKAGFV 471
Query: 426 DMDPQDFSRYQFLLNVYA 443
P D + FL+ +YA
Sbjct: 472 ---PDDIT---FLVVLYA 483
Score = 99.0 bits (245), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 76/292 (26%), Positives = 127/292 (43%), Gaps = 46/292 (15%)
Query: 78 MIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGA 137
M++ G + +T + +C + G HGL NG + + + N+L+ MY
Sbjct: 1 MLRAGTRLDHFTLPHVLKACGELPSYRCGSAFHGLICCNGFESNVFICNALVAMYS---- 56
Query: 138 MDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPER---NVVSWNIMISGY 194
R G + A +FD + +R +V+SWN ++S +
Sbjct: 57 ---------------------------RCGSLEEASMIFDEITQRGIDDVISWNSIVSAH 89
Query: 195 SKSGNPGCSLKLFREMM------KSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRT 248
KS N +L LF +M + R + ++ ++L ACG + + VHG +R
Sbjct: 90 VKSSNAWTALDLFSKMTLIVHEKPTNERSDIISIVNILPACGSLKAVPQTKEVHGNAIRN 149
Query: 249 SLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLF 308
++ + ALID Y+KC +E A +VF+ M +++V WNAM+ G+ G + +LF
Sbjct: 150 GTFLDVFVGNALIDAYAKCGLMENAVKVFNMMEFKDVVSWNAMVAGYSQSGNFKAAFELF 209
Query: 309 TALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPN 360
+ +I D +T+ VI + E FRQMI F PN
Sbjct: 210 K-----NMRKENIPLDMVTWTAVIAGYSQRGCSHEALNVFRQMI-FSGSLPN 255
Score = 38.9 bits (89), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 45/218 (20%), Positives = 95/218 (43%), Gaps = 8/218 (3%)
Query: 6 QIQAHLITSGLFFNNSFWTIN-LLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSN 64
QI A+++ + +++++ N L+ + G D VF ++ +++ Y
Sbjct: 392 QIHAYVLRHHQYDSSAYFVANCLINMYSKCGDVDTARHVFDSMSQKSAISWTSMMTGYGM 451
Query: 65 SCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERG-GMCHGLALKNGVDFELP 123
+ + + +M K GF+P+ TF+ + +C+ G V++G ++ G+
Sbjct: 452 HGRGSEALDIFDKMRKAGFVPDDITFLVVLYACSHCGMVDQGLSYFDSMSADYGLTPRAE 511
Query: 124 VMNSLINMYGCFGAMDCARNMF--VQMSPRDLISWNSIVSG-HVRSGDMSAAHELFDI-- 178
I++ FG +D A + M P ++ W +++S V S A H L +
Sbjct: 512 HYAYAIDLLARFGRLDKAWKTVKDMPMEPTAVV-WVALLSACRVHSNVELAEHALNKLVE 570
Query: 179 MPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFR 216
M N S+ ++ + Y+ +G ++ M KSG +
Sbjct: 571 MNAENDGSYTLISNIYATAGRWKDVARIRHLMKKSGIK 608
>gi|356561853|ref|XP_003549191.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g20230-like [Glycine max]
Length = 748
Score = 231 bits (590), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 133/456 (29%), Positives = 243/456 (53%), Gaps = 20/456 (4%)
Query: 50 PGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVER---G 106
P N ++ + N+ D+ V + M+ GF P+ T + + GC+E G
Sbjct: 203 PNLVSWNGMLAGFGNNGFYDEAVGMFRMMLVQGFWPDGSTVSCVLPA---VGCLEDVVVG 259
Query: 107 GMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRS 166
HG +K G+ + V++++++MYG G + +F ++ ++ S N+ ++G R+
Sbjct: 260 AQVHGYVIKQGLGSDKFVVSAMLDMYGKCGCVKEMSRVFDEVEEMEIGSLNAFLTGLSRN 319
Query: 167 GDMSAAHELF----DIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTM 222
G + A E+F D E NVV+W +I+ S++G +L+LFR+M G N T+
Sbjct: 320 GMVDTALEVFNKFKDQKMELNVVTWTSIIASCSQNGKDLEALELFRDMQAYGVEPNAVTI 379
Query: 223 ASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMAD 282
S++ ACG + G+ +H +++R + ++ + +ALID+Y+KC ++++A+R FD M+
Sbjct: 380 PSLIPACGNISALMHGKEIHCFSLRRGIFDDVYVGSALIDMYAKCGRIQLARRCFDKMSA 439
Query: 283 RNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLT 342
NLV WNA++ G+ +HGK +E +++F ++ PD +TF V+ AC + L
Sbjct: 440 LNLVSWNAVMKGYAMHGKAKETMEMFHMMLQ-----SGQKPDLVTFTCVLSACAQNGLTE 494
Query: 343 EGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWV 402
EG + + M + + I+P HY C+ L + EEA I+++MP + D + +W
Sbjct: 495 EGWRCYNSMSEEHGIEPKMEHYACLVTLLSRVGKLEEAYSIIKEMPFEPD-----ACVWG 549
Query: 403 SLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRR 462
+LLS CR +++ E A+ ++P + Y L N+YA G W++ R+RE+MK +
Sbjct: 550 ALLSSCRVHNNLSLGEIAAEKLFFLEPTNPGNYILLSNIYASKGLWDEENRIREVMKSKG 609
Query: 463 MGRMPGCRLVDLKEVVEKLKVGHFWRGGMKEEVNKM 498
+ + PG +++ V L G MK+ + K+
Sbjct: 610 LRKNPGYSWIEVGHKVHMLLAGDQSHPQMKDILEKL 645
Score = 134 bits (338), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 97/362 (26%), Positives = 179/362 (49%), Gaps = 16/362 (4%)
Query: 8 QAH-LITSGLFFNNSFWTINLLKHSAD---FGSPDYTVLVFKCINNPGTFCVNAVIKAYS 63
QAH LI F+++ T +LL A+ +P ++ + + +P F +++I A++
Sbjct: 21 QAHALILRLNLFSDTQLTTSLLSFYANALSLSTPQLSLTLSSHLPHPTLFSFSSLIHAFA 80
Query: 64 NSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELP 123
S + + + +P+++ S SCA ++ G H A +G +
Sbjct: 81 RSHHFPHVLTTFSHLHPLRLIPDAFLLPSAIKSCASLRALDPGQQLHAFAAASGFLTDSI 140
Query: 124 VMNSLINMY-GCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMP-- 180
V +SL +MY C +D AR +F +M RD++ W+++++G+ R G + A ELF M
Sbjct: 141 VASSLTHMYLKCDRILD-ARKLFDRMPDRDVVVWSAMIAGYSRLGLVEEAKELFGEMRSG 199
Query: 181 --ERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEG 238
E N+VSWN M++G+ +G ++ +FR M+ GF + T++ VL A G G
Sbjct: 200 GVEPNLVSWNGMLAGFGNNGFYDEAVGMFRMMLVQGFWPDGSTVSCVLPAVGCLEDVVVG 259
Query: 239 RSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIH 298
VHGY ++ L + + +A++D+Y KC V+ RVFD + + + NA + G +
Sbjct: 260 AQVHGYVIKQGLGSDKFVVSAMLDMYGKCGCVKEMSRVFDEVEEMEIGSLNAFLTGLSRN 319
Query: 299 GKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIK 358
G + +++F + + + +T+ +I +C + E + FR M Y ++
Sbjct: 320 GMVDTALEVFNKFKD-----QKMELNVVTWTSIIASCSQNGKDLEALELFRDM-QAYGVE 373
Query: 359 PN 360
PN
Sbjct: 374 PN 375
>gi|15231592|ref|NP_189297.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75275188|sp|Q38959.1|PP257_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At3g26630, chloroplastic; Flags: Precursor
gi|1402883|emb|CAA66814.1| hypothetical protein [Arabidopsis thaliana]
gi|1495263|emb|CAA66119.1| orf09 [Arabidopsis thaliana]
gi|11994298|dbj|BAB01728.1| unnamed protein product [Arabidopsis thaliana]
gi|20466384|gb|AAM20509.1| unknown protein [Arabidopsis thaliana]
gi|23198064|gb|AAN15559.1| unknown protein [Arabidopsis thaliana]
gi|332643668|gb|AEE77189.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 455
Score = 231 bits (590), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 134/396 (33%), Positives = 206/396 (52%), Gaps = 7/396 (1%)
Query: 3 QLLQIQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAY 62
QL QI +I L N+ L+ S+ FG Y LVF + +P TF N +I++
Sbjct: 35 QLKQIHTKIIKHNLT-NDQLLVRQLISVSSSFGETQYASLVFNQLQSPSTFTWNLMIRSL 93
Query: 63 SNSCVPDQGVV-FYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFE 121
S + P + ++ F L MI + + +TF + +C + + G HGLA+K G +
Sbjct: 94 SVNHKPREALLLFILMMISHQSQFDKFTFPFVIKACLASSSIRLGTQVHGLAIKAGFFND 153
Query: 122 LPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPE 181
+ N+L+++Y G D R +F +M R ++SW +++ G V + + +A +F+ MP
Sbjct: 154 VFFQNTLMDLYFKCGKPDSGRKVFDKMPGRSIVSWTTMLYGLVSNSQLDSAEIVFNQMPM 213
Query: 182 RNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSV 241
RNVVSW MI+ Y K+ P + +LFR M + N+ T+ ++L A + + GR V
Sbjct: 214 RNVVSWTAMITAYVKNRRPDEAFQLFRRMQVDDVKPNEFTIVNLLQASTQLGSLSMGRWV 273
Query: 242 HGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKP 301
H Y + + L TALID+YSKC ++ A++VFD M ++L WN+MI +HG
Sbjct: 274 HDYAHKNGFVLDCFLGTALIDMYSKCGSLQDARKVFDVMQGKSLATWNSMITSLGVHGCG 333
Query: 302 EEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNF 361
EE + LF S+ PD ITF+GV+ AC + +G +YF +MI Y I P
Sbjct: 334 EEALSLFEE----MEEEASVEPDAITFVGVLSACANTGNVKDGLRYFTRMIQVYGISPIR 389
Query: 362 AHYWCMANLYAGAELTEEAEEILRKMPEDND-NMSF 396
H CM L A E+A ++ M D D N SF
Sbjct: 390 EHNACMIQLLEQALEVEKASNLVESMDSDPDFNSSF 425
Score = 43.5 bits (101), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 27/114 (23%), Positives = 53/114 (46%), Gaps = 4/114 (3%)
Query: 233 ARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMI 292
+ F++ + +H ++ +L + +L LI + S + + A VF+ + + WN MI
Sbjct: 31 SNFSQLKQIHTKIIKHNLTNDQLLVRQLISVSSSFGETQYASLVFNQLQSPSTFTWNLMI 90
Query: 293 LGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRK 346
++ KP E + LF + + D+ TF VI AC+ + + G +
Sbjct: 91 RSLSVNHKPREALLLFILM----MISHQSQFDKFTFPFVIKACLASSSIRLGTQ 140
>gi|347954502|gb|AEP33751.1| chloroplast biogenesis 19, partial [Lepidium virginicum]
Length = 485
Score = 231 bits (590), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 130/407 (31%), Positives = 213/407 (52%), Gaps = 14/407 (3%)
Query: 82 GFMPNSYTFVSLFGSCAK--TGCVERGGMCHGLALKNGVD-FELPVMNSLINMYGCFGAM 138
G PN TF++L +C +G G + HG A K G++ + V +++ MY G +
Sbjct: 51 GIEPNHITFIALLSACGNFPSGSEGLGYLLHGYACKLGLERSHVMVGTAILGMYSKSGHL 110
Query: 139 DCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSG 198
AR +F + ++ ++WN+++ G++R+G + A ++FD MP+R+++SW MI+G+ K G
Sbjct: 111 RKARLVFDYIEDKNSVTWNTMIDGYMRNGQVDNAVDVFDKMPDRDLISWTAMITGFVKKG 170
Query: 199 NPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDT 258
+L FREM SG + + S + AC + G VH Y + + N+ +
Sbjct: 171 FHEEALAWFREMQISGVNPDYVAIISAVAACTNLGALSFGLWVHRYVLSQDFRNNVRVSN 230
Query: 259 ALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAG 318
+LIDLY +C VE A++VFD M R +V WN++I+G +G E + F +
Sbjct: 231 SLIDLYCRCGCVEFARQVFDKMEKRTVVSWNSVIVGFAANGNANESLVYFRKMQR----- 285
Query: 319 GSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTE 378
+PD +TF G + AC L+ EG +YF+ M Y+I P HY C+ +LY+ A E
Sbjct: 286 EGFTPDGVTFTGALTACSHVGLVEEGFQYFQMMKHDYRISPRIEHYGCLVDLYSRAGRLE 345
Query: 379 EAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQG-AVAMVERLAKSFVDMDPQDFSRYQF 437
+A ++ MP M ++ SLL+ CR G + ERL K D+D + S Y
Sbjct: 346 DAFIVVESMP-----MKPNEVVIGSLLAACRNHGNHTILAERLMKYITDLDVKSHSNYVI 400
Query: 438 LLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLKEVVEKLKVG 484
L N+YA G+WE +++R MK + + PG +++ + G
Sbjct: 401 LSNMYAADGKWEGASKMRRKMKGLGLKKQPGYSSIEIDDCTHVFMAG 447
Score = 82.0 bits (201), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 65/249 (26%), Positives = 115/249 (46%), Gaps = 35/249 (14%)
Query: 183 NVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRS-- 240
+VSW I+ S+ G +++ F +M +G N T ++L+ACG +EG
Sbjct: 20 TIVSWTSRITLLSRDGRLAEAVREFSDMRLAGIEPNHITFIALLSACGNFPSGSEGLGYL 79
Query: 241 VHGYTVRTSL-KPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHG 299
+HGY + L + ++++ TA++ +YSK + A+ VFD + D+N V WN MI G+ +G
Sbjct: 80 LHGYACKLGLERSHVMVGTAILGMYSKSGHLRKARLVFDYIEDKNSVTWNTMIDGYMRNG 139
Query: 300 KPEEGIKLF-----------TALVNGTVAGG---------------SISPDEITFIGVIC 333
+ + + +F TA++ G V G ++PD + I +
Sbjct: 140 QVDNAVDVFDKMPDRDLISWTAMITGFVKKGFHEEALAWFREMQISGVNPDYVAIISAVA 199
Query: 334 ACVRAELLTEGRKYFRQMI--DFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDN 391
AC L+ G R ++ DF + N + +LY E A ++ KM E
Sbjct: 200 ACTNLGALSFGLWVHRYVLSQDF---RNNVRVSNSLIDLYCRCGCVEFARQVFDKM-EKR 255
Query: 392 DNMSFESIM 400
+S+ S++
Sbjct: 256 TVVSWNSVI 264
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 64/251 (25%), Positives = 101/251 (40%), Gaps = 40/251 (15%)
Query: 35 GSPDYTVLVFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLF 94
G D V VF + + A+I + ++ + ++ +M +G P+ +S
Sbjct: 139 GQVDNAVDVFDKMPDRDLISWTAMITGFVKKGFHEEALAWFREMQISGVNPDYVAIISAV 198
Query: 95 GSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLI 154
+C G + G H L + V NSLI++Y G ++ AR +F +M R ++
Sbjct: 199 AACTNLGALSFGLWVHRYVLSQDFRNNVRVSNSLIDLYCRCGCVEFARQVFDKMEKRTVV 258
Query: 155 SWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSG 214
SWNS+ I G++ +GN SL FR+M + G
Sbjct: 259 SWNSV-------------------------------IVGFAANGNANESLVYFRKMQREG 287
Query: 215 FRGNDKTMASVLTACGRSARFNEGRSV-----HGYTVRTSLKPNIILDTALIDLYSKCQK 269
F + T LTAC EG H Y + P I L+DLYS+ +
Sbjct: 288 FTPDGVTFTGALTACSHVGLVEEGFQYFQMMKHDYRI----SPRIEHYGCLVDLYSRAGR 343
Query: 270 VEVAQRVFDSM 280
+E A V +SM
Sbjct: 344 LEDAFIVVESM 354
>gi|115463097|ref|NP_001055148.1| Os05g0305300 [Oryza sativa Japonica Group]
gi|113578699|dbj|BAF17062.1| Os05g0305300 [Oryza sativa Japonica Group]
Length = 852
Score = 231 bits (590), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 135/435 (31%), Positives = 219/435 (50%), Gaps = 37/435 (8%)
Query: 56 NAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALK 115
AVI YS + + + QMI +G +PN T +S+ +CA G +G H +LK
Sbjct: 332 TAVIAGYSQRGCSHEALNVFRQMIFSGSLPNCVTIISVLSACASLGAFSQGMEIHAYSLK 391
Query: 116 NGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHEL 175
N L+ + FG D DL+ +N+++ + + AA +
Sbjct: 392 N----------CLLTLDNDFGGED-----------EDLMVYNALIDMYSKCRSFKAARSI 430
Query: 176 FDIMP--ERNVVSWNIMISGYSKSGNPGCSLKLFREMMKS--GFRGNDKTMASVLTACGR 231
FD +P ERNVV+W +MI G+++ G+ +LKLF EM+ G N T++ +L AC
Sbjct: 431 FDDIPLEERNVVTWTVMIGGHAQYGDSNDALKLFVEMISEPYGVAPNAYTISCILMACAH 490
Query: 232 SARFNEGRSVHGYTVRTSLKPN--IILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWN 289
A G+ +H Y +R + + LI++YSKC V+ A+ VFDSM+ ++ + W
Sbjct: 491 LAAIRIGKQIHAYVLRHHQYDSSAYFVANCLINMYSKCGDVDTARHVFDSMSQKSAISWT 550
Query: 290 AMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFR 349
+M+ G+ +HG+ E + +F + PD+ITF+ V+ AC ++ +G YF
Sbjct: 551 SMMTGYGMHGRGSEALDIFDKMRKA-----GFVPDDITFLVVLYACSHCGMVDQGLSYFD 605
Query: 350 QMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCR 409
M Y + P HY +L A ++A + ++ MP M +++WV+LLS CR
Sbjct: 606 SMSADYGLTPRAEHYAYAIDLLARFGRLDKAWKTVKDMP-----MEPTAVVWVALLSACR 660
Query: 410 FQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGC 469
V + E V+M+ ++ Y + N+YA AG+W+DVAR+R LMKK + + PGC
Sbjct: 661 VHSNVELAEHALNKLVEMNAENDGSYTLISNIYATAGRWKDVARIRHLMKKSGIKKRPGC 720
Query: 470 RLVDLKEVVEKLKVG 484
V ++ VG
Sbjct: 721 SWVQGQKGTASFFVG 735
Score = 161 bits (408), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 106/378 (28%), Positives = 199/378 (52%), Gaps = 39/378 (10%)
Query: 89 TFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQM 148
+ V++ +C V + HG A++NG ++ V N+LI+ Y G M+ A +F M
Sbjct: 229 SIVNILPACGSLKAVPQTKEVHGNAIRNGTFLDVFVGNALIDAYAKCGLMENAVKVFNMM 288
Query: 149 SPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNV----VSWNIMISGYSKSGNPGCSL 204
+D++SWN++V+G+ +SG+ AA ELF M + N+ V+W +I+GYS+ G +L
Sbjct: 289 EFKDVVSWNAMVAGYSQSGNFKAAFELFKNMRKENIPLDMVTWTAVIAGYSQRGCSHEAL 348
Query: 205 KLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSL----------KPNI 254
+FR+M+ SG N T+ SVL+AC F++G +H Y+++ L ++
Sbjct: 349 NVFRQMIFSGSLPNCVTIISVLSACASLGAFSQGMEIHAYSLKNCLLTLDNDFGGEDEDL 408
Query: 255 ILDTALIDLYSKCQKVEVAQRVFDS--MADRNLVCWNAMILGHCIHGKPEEGIKLFTALV 312
++ ALID+YSKC+ + A+ +FD + +RN+V W MI GH +G + +KLF ++
Sbjct: 409 MVYNALIDMYSKCRSFKAARSIFDDIPLEERNVVTWTVMIGGHAQYGDSNDALKLFVEMI 468
Query: 313 NGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYW--CMANL 370
+ ++P+ T ++ AC + G++ ++ ++ + A++ C+ N+
Sbjct: 469 SEPYG---VAPNAYTISCILMACAHLAAIRIGKQIHAYVLRHHQYDSS-AYFVANCLINM 524
Query: 371 YAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQG----AVAMVERLAKS-FV 425
Y+ + A + M + + +I W S+++ G A+ + +++ K+ FV
Sbjct: 525 YSKCGDVDTARHVFDSMSQKS------AISWTSMMTGYGMHGRGSEALDIFDKMRKAGFV 578
Query: 426 DMDPQDFSRYQFLLNVYA 443
P D + FL+ +YA
Sbjct: 579 ---PDDIT---FLVVLYA 590
Score = 115 bits (288), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 87/329 (26%), Positives = 147/329 (44%), Gaps = 34/329 (10%)
Query: 35 GSPDYTVLVFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLF 94
G+ DY +LV + + N +I+ + D + +M++ G + +T +
Sbjct: 65 GATDYALLVLERVTPSPAVWWNLLIREHIKQGRLDSAINVSCRMLRAGTRLDHFTLPHVL 124
Query: 95 GSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPR--- 151
+C + G HGL NG + + + N+L+ MY G+++ A +F +++ R
Sbjct: 125 KACGELPSYRCGSAFHGLICCNGFESNVFICNALVAMYSRCGSLEEASMIFDEITQRGID 184
Query: 152 DLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMM 211
D+ISWNSIVS HV+S + A +LF M L
Sbjct: 185 DVISWNSIVSAHVKSSNAWTALDLFSKM-------------------------TLIVHEK 219
Query: 212 KSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVE 271
+ R + ++ ++L ACG + + VHG +R ++ + ALID Y+KC +E
Sbjct: 220 PTNERSDIISIVNILPACGSLKAVPQTKEVHGNAIRNGTFLDVFVGNALIDAYAKCGLME 279
Query: 272 VAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGV 331
A +VF+ M +++V WNAM+ G+ G + +LF + +I D +T+ V
Sbjct: 280 NAVKVFNMMEFKDVVSWNAMVAGYSQSGNFKAAFELFK-----NMRKENIPLDMVTWTAV 334
Query: 332 ICACVRAELLTEGRKYFRQMIDFYKIKPN 360
I + E FRQMI F PN
Sbjct: 335 IAGYSQRGCSHEALNVFRQMI-FSGSLPN 362
Score = 72.4 bits (176), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 41/168 (24%), Positives = 81/168 (48%), Gaps = 5/168 (2%)
Query: 148 MSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLF 207
+SPR L + +V+ ++ G A + + + V WN++I + K G ++ +
Sbjct: 48 ISPRSLGT--GVVASYLACGATDYALLVLERVTPSPAVWWNLLIREHIKQGRLDSAINVS 105
Query: 208 REMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKC 267
M+++G R + T+ VL ACG + G + HG + N+ + AL+ +YS+C
Sbjct: 106 CRMLRAGTRLDHFTLPHVLKACGELPSYRCGSAFHGLICCNGFESNVFICNALVAMYSRC 165
Query: 268 QKVEVAQRVFDSMADR---NLVCWNAMILGHCIHGKPEEGIKLFTALV 312
+E A +FD + R +++ WN+++ H + LF+ +
Sbjct: 166 GSLEEASMIFDEITQRGIDDVISWNSIVSAHVKSSNAWTALDLFSKMT 213
Score = 38.9 bits (89), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 45/218 (20%), Positives = 95/218 (43%), Gaps = 8/218 (3%)
Query: 6 QIQAHLITSGLFFNNSFWTIN-LLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSN 64
QI A+++ + +++++ N L+ + G D VF ++ +++ Y
Sbjct: 499 QIHAYVLRHHQYDSSAYFVANCLINMYSKCGDVDTARHVFDSMSQKSAISWTSMMTGYGM 558
Query: 65 SCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERG-GMCHGLALKNGVDFELP 123
+ + + +M K GF+P+ TF+ + +C+ G V++G ++ G+
Sbjct: 559 HGRGSEALDIFDKMRKAGFVPDDITFLVVLYACSHCGMVDQGLSYFDSMSADYGLTPRAE 618
Query: 124 VMNSLINMYGCFGAMDCARNMF--VQMSPRDLISWNSIVSG-HVRSGDMSAAHELFDI-- 178
I++ FG +D A + M P ++ W +++S V S A H L +
Sbjct: 619 HYAYAIDLLARFGRLDKAWKTVKDMPMEPTAVV-WVALLSACRVHSNVELAEHALNKLVE 677
Query: 179 MPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFR 216
M N S+ ++ + Y+ +G ++ M KSG +
Sbjct: 678 MNAENDGSYTLISNIYATAGRWKDVARIRHLMKKSGIK 715
>gi|115480595|ref|NP_001063891.1| Os09g0555400 [Oryza sativa Japonica Group]
gi|113632124|dbj|BAF25805.1| Os09g0555400 [Oryza sativa Japonica Group]
gi|125606583|gb|EAZ45619.1| hypothetical protein OsJ_30287 [Oryza sativa Japonica Group]
Length = 644
Score = 231 bits (590), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 130/460 (28%), Positives = 234/460 (50%), Gaps = 15/460 (3%)
Query: 10 HLITSGLFFNNSFWTINLLKHS-ADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSNSCVP 68
H + L F + N L HS A GS + F + + N++I Y+ +
Sbjct: 133 HGVVVKLGFVGQVFVGNALLHSYASAGSLGDSRRFFDEMVDRNVVSWNSMINGYAQAGNT 192
Query: 69 DQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSL 128
+ + M + G + + +T VSL +C+ G +E G + H L G +L + N+L
Sbjct: 193 REACSLFEGMRRQGLLADEFTLVSLLFACSAEGNLEFGKLVHSHLLVRGCRIDLILANAL 252
Query: 129 INMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWN 188
++MYG G + A F M ++ +SW S++ + + AA + F+ +PE++++SWN
Sbjct: 253 VDMYGKCGDLLMAHTCFDMMPFKNAVSWTSMLCALAKRASIDAARDWFEQIPEKSIISWN 312
Query: 189 IMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRT 248
MIS Y + G +L L+ M G ++ T+A+VL+ACG+ G+ +H
Sbjct: 313 AMISCYVQGGRFHEALDLYNRMKLLGLAPDEFTLAAVLSACGQLGDLASGKMIHDCIRDN 372
Query: 249 SLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLF 308
P + L +L+D+Y++C +V+ A +F M +N++ WNA+I +HG+ ++ + F
Sbjct: 373 FHNPGVALFNSLLDMYARCGQVDTAISLFSEMPSKNVISWNAIIGALAMHGRAQDALMFF 432
Query: 309 TALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMA 368
++V + PDEITF+ ++ AC LL G+ YF+ M Y +KP HY CM
Sbjct: 433 RSMVF-----DAFPPDEITFVALLSACNHGGLLEAGQYYFQAMRHVYNVKPGVEHYACMV 487
Query: 369 NLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMD 428
+L +A ++++ MP M + ++W +LL CR G + + +++ K ++++
Sbjct: 488 DLLGRGGQLAKAVDLIKDMP-----MRPDVVVWGALLGACRIHGHIQIGKQVIKQLLELE 542
Query: 429 PQDFSRYQFLLNVYAVAGQWEDVARVRELMK----KRRMG 464
+ + N+ QWED+ R+R+LM+ K+ MG
Sbjct: 543 GMSGGLFVLISNMLYETHQWEDMKRLRKLMREWGMKKNMG 582
Score = 145 bits (366), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 108/420 (25%), Positives = 185/420 (44%), Gaps = 65/420 (15%)
Query: 1 MKQLLQIQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIK 60
+ +L Q+ AHL+ G+ S + A G Y +F I +P F N++I+
Sbjct: 25 VHRLNQLHAHLVVHGVDDVTSQILASYCALPAG-GGVWYARQLFDRIPDPDRFVYNSLIR 83
Query: 61 AYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDF 120
AY NS P + + MI+ G +PN +T L +CA+ E + HG+ +K G
Sbjct: 84 AYCNSHCPQEALPLLRGMIRRGILPNEFTLPFLLKACARVQAWEHVMVTHGVVVKLGFVG 143
Query: 121 ELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMP 180
++ V N+L++ Y G++ +R F +M R+++SWNS+++G+ ++G+ A
Sbjct: 144 QVFVGNALLHSYASAGSLGDSRRFFDEMVDRNVVSWNSMINGYAQAGNTREA-------- 195
Query: 181 ERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRS 240
CS LF M + G ++ T+ S+L AC G+
Sbjct: 196 ---------------------CS--LFEGMRRQGLLADEFTLVSLLFACSAEGNLEFGKL 232
Query: 241 VHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGK 300
VH + + + ++IL AL+D+Y KC + +A FD M +N V W +M+ C K
Sbjct: 233 VHSHLLVRGCRIDLILANALVDMYGKCGDLLMAHTCFDMMPFKNAVSWTSML---CALAK 289
Query: 301 --------------PEEGIKLFTALVNGTVAGG---------------SISPDEITFIGV 331
PE+ I + A+++ V GG ++PDE T V
Sbjct: 290 RASIDAARDWFEQIPEKSIISWNAMISCYVQGGRFHEALDLYNRMKLLGLAPDEFTLAAV 349
Query: 332 ICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDN 391
+ AC + L G+ + D + P A + + ++YA + A + +MP N
Sbjct: 350 LSACGQLGDLASGKMIHDCIRDNFH-NPGVALFNSLLDMYARCGQVDTAISLFSEMPSKN 408
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 73/313 (23%), Positives = 126/313 (40%), Gaps = 43/313 (13%)
Query: 7 IQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSNSC 66
+ AH + F N+ ++L A S D F+ I NA+I Y
Sbjct: 263 LMAHTCFDMMPFKNAVSWTSMLCALAKRASIDAARDWFEQIPEKSIISWNAMISCYVQGG 322
Query: 67 VPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMN 126
+ + Y +M G P+ +T ++ +C + G + G M H N + + + N
Sbjct: 323 RFHEALDLYNRMKLLGLAPDEFTLAAVLSACGQLGDLASGKMIHDCIRDNFHNPGVALFN 382
Query: 127 SLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVS 186
SL++MY G +D A ++F +M +++ISWN+I
Sbjct: 383 SLLDMYARCGQVDTAISLFSEMPSKNVISWNAI--------------------------- 415
Query: 187 WNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSV----- 241
I + G +L FR M+ F ++ T ++L+AC G+
Sbjct: 416 ----IGALAMHGRAQDALMFFRSMVFDAFPPDEITFVALLSACNHGGLLEAGQYYFQAMR 471
Query: 242 HGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADR-NLVCWNAMILGHC-IHG 299
H Y V KP + ++DL + ++ A + M R ++V W A+ LG C IHG
Sbjct: 472 HVYNV----KPGVEHYACMVDLLGRGGQLAKAVDLIKDMPMRPDVVVWGAL-LGACRIHG 526
Query: 300 KPEEGIKLFTALV 312
+ G ++ L+
Sbjct: 527 HIQIGKQVIKQLL 539
>gi|356496056|ref|XP_003516886.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g31920-like [Glycine max]
Length = 605
Score = 231 bits (590), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 142/485 (29%), Positives = 248/485 (51%), Gaps = 47/485 (9%)
Query: 1 MKQLLQIQAHLITSGLFFNNSFWTINLLKHSA--DFGSPDYTVLVFKCINNPGTFCVNAV 58
M++ Q+ AH++ GLF++ SF NL+ A +GS +Y +F I PG+F N +
Sbjct: 44 MEEFKQVHAHILKLGLFYD-SFCGSNLVASCALSRWGSMEYACSIFSQIEEPGSFEYNTM 102
Query: 59 IKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGV 118
I+ NS ++ ++ Y++M++ G P+++T+ + +C+ ++ G H K G+
Sbjct: 103 IRGNVNSMDLEEALLLYVEMLERGIEPDNFTYPFVLKACSLLVALKEGVQIHAHVFKAGL 162
Query: 119 DFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDI 178
+ ++ V N LI+MYG GA++ A +F Q
Sbjct: 163 EVDVFVQNGLISMYGKCGAIEHAGVVFEQ------------------------------- 191
Query: 179 MPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSG-FRGNDKTMASVLTACGRSARFNE 237
M E++V SW+ +I ++ L L +M G R + + S L+AC N
Sbjct: 192 MDEKSVASWSSIIGAHASVEMWHECLMLLGDMSGEGRHRAEESILVSALSACTHLGSPNL 251
Query: 238 GRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCI 297
GR +HG +R + N+++ T+LID+Y KC +E VF +MA +N + MI G I
Sbjct: 252 GRCIHGILLRNISELNVVVKTSLIDMYVKCGSLEKGLCVFQNMAHKNRYSYTVMIAGLAI 311
Query: 298 HGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKI 357
HG+ E +++F+ ++ ++PD++ ++GV+ AC A L+ EG + F +M + I
Sbjct: 312 HGRGREAVRVFSDMLE-----EGLTPDDVVYVGVLSACSHAGLVNEGLQCFNRMQFEHMI 366
Query: 358 KPNFAHYWCMANLYAGAELTEEAEEILRKMP-EDNDNMSFESIMWVSLLSLCRFQGAVAM 416
KP HY CM +L A + +EA ++++ MP + ND ++W SLLS C+ + +
Sbjct: 367 KPTIQHYGCMVDLMGRAGMLKEAYDLIKSMPIKPND------VVWRSLLSACKVHHNLEI 420
Query: 417 VERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLKE 476
E A++ ++ + Y L N+YA A +W +VAR+R M ++ + + PG LV+
Sbjct: 421 GEIAAENIFRLNKHNPGDYLVLANMYARAKKWANVARIRTEMAEKHLVQTPGFSLVEANR 480
Query: 477 VVEKL 481
V K
Sbjct: 481 NVYKF 485
>gi|297729191|ref|NP_001176959.1| Os12g0490100 [Oryza sativa Japonica Group]
gi|255670316|dbj|BAH95687.1| Os12g0490100 [Oryza sativa Japonica Group]
Length = 451
Score = 231 bits (590), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 137/448 (30%), Positives = 220/448 (49%), Gaps = 42/448 (9%)
Query: 78 MIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDF----------------- 120
M+ +G PN++T S+ C+K V G H K G+
Sbjct: 1 MLWSGPRPNAFTVTSVIKCCSKVRAVHEGLQVHAFLAKAGLGCSSVHVGAALLDLYGNIG 60
Query: 121 ----------ELPVMNSLI--NMYGC---FGAMDCARNMFVQMSPRDLISWNSIVSGHVR 165
E+PV N ++ M C G M AR +F M+ RD ISWN+++SG++
Sbjct: 61 LVGDARRVFDEMPVKNVVVGNTMVACNVRAGDMGAAREVFDGMAERDPISWNTLMSGYLH 120
Query: 166 SGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASV 225
GD + ELFD M RNV SWN MI+ S+ G+ ++K+F M +GF + TMA +
Sbjct: 121 LGDTATVRELFDEMTVRNVNSWNTMIAACSEEGSLADTVKVFNRMRATGFEPDAATMAVL 180
Query: 226 LTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNL 285
++AC + VHG ++ ++ N + +LID+Y+KC + AQ +F ++
Sbjct: 181 MSACAQLGSLTIAGQVHGLLQKSCVEMNCHVQNSLIDMYAKCGCISQAQFLFTETYPKDT 240
Query: 286 VCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGR 345
V +N MI+ HG + + LF A+V+ + PD +TF+GV+ AC A L+ G+
Sbjct: 241 VSYNVMIIAFAQHGHARDALDLFNAMVD-----SGLQPDAVTFLGVLSACAHAGLVEYGK 295
Query: 346 KYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLL 405
YF M Y ++ + HY C+ +LY A L EEA ++ MP + + +W +LL
Sbjct: 296 NYFELMKTTYAVQQSPDHYACVVDLYGRAGLIEEAHCFVKTMP-----VKPHAGVWGALL 350
Query: 406 SLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGR 465
+ CR V + E AK + ++P++ Y L N A QW+ V V+ M+++ + +
Sbjct: 351 NACRKHCHVDVGEIAAKELIRIEPKNPGNYVLLRNTLARGQQWDAVEDVQLSMRRKVIDK 410
Query: 466 MPGCRLVDLKEVVEKLKVGHFWRGGMKE 493
GC V++ VV + G F+ E
Sbjct: 411 TAGCSWVEVDSVVHEFLAGDFYHPKFDE 438
>gi|115486527|ref|NP_001068407.1| Os11g0661000 [Oryza sativa Japonica Group]
gi|108864631|gb|ABG22570.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
gi|113645629|dbj|BAF28770.1| Os11g0661000 [Oryza sativa Japonica Group]
gi|215694601|dbj|BAG89792.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215701272|dbj|BAG92696.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 610
Score = 231 bits (590), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 132/418 (31%), Positives = 223/418 (53%), Gaps = 12/418 (2%)
Query: 53 FCVNAVIKAYSNSCVPDQGV-VFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHG 111
+ ++++ A S+S P+ + + + + P+ + S+ A+ G H
Sbjct: 70 YIYSSLLTAVSHSASPELALPILRCMLSADALHPDHFVISSVASVFARLRSRRLGRQLHA 129
Query: 112 LALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSA 171
+ + + + V +SL++MY G+ D R +F MS ++ + W ++VSG+ +G
Sbjct: 130 HFVVSPYNGDDVVKSSLVDMYCKCGSPDDGRKVFDSMSAKNSVVWTALVSGYASNGRSEE 189
Query: 172 AHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDK-TMASVLTACG 230
A +LF MP RN+ +W +ISG +G +++LF EM + G R +D ++ V+
Sbjct: 190 ALQLFRSMPGRNLFAWTALISGLVNTGESVGAVELFVEMRRDGVRIDDAFVLSIVIGGSA 249
Query: 231 RSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNA 290
A F GR +HG T+R N+I+ ALID+YSKC + A+ VF+ + R+++ W
Sbjct: 250 DLAAFVLGRQLHGSTMRLGFLSNMIVGNALIDMYSKCSDILSAREVFEGITFRDVISWTT 309
Query: 291 MILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQ 350
M++G HG+ EE + L+ +V +AG P+E+TF+G+I AC A L+ +GR+ F
Sbjct: 310 MVVGEAQHGRAEEALALYDRMV---LAGA--KPNEVTFVGLIYACSHAGLVQKGRQLFES 364
Query: 351 MIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRF 410
M + Y I P HY C +L + + EAEE++ MP + D + W +LLS C
Sbjct: 365 MKNEYGITPRLQHYTCYLDLLSRSGHLLEAEELMTTMPYEPDEAT-----WGALLSACTK 419
Query: 411 QGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPG 468
M R++ +++ P+D S Y L NVYAV G+W+ VA+VR+ M + + PG
Sbjct: 420 YKDAEMCIRISDKLLELRPKDSSTYILLSNVYAVNGKWDSVAKVRKCMIGLEIRKEPG 477
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 49/174 (28%), Positives = 93/174 (53%), Gaps = 12/174 (6%)
Query: 158 SIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRG 217
++VS + +S + A LFD P R++ ++ +++ S S +P +L + R M+ +
Sbjct: 43 ALVSAYAKSRLLPDALHLFDETPRRDIYIYSSLLTAVSHSASPELALPILRCMLSADALH 102
Query: 218 NDK-TMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRV 276
D ++SV + R GR +H + V + + ++ ++L+D+Y KC + ++V
Sbjct: 103 PDHFVISSVASVFARLRSRRLGRQLHAHFVVSPYNGDDVVKSSLVDMYCKCGSPDDGRKV 162
Query: 277 FDSMADRNLVCWNAMILGHCIHGKPEEGIKLF-----------TALVNGTVAGG 319
FDSM+ +N V W A++ G+ +G+ EE ++LF TAL++G V G
Sbjct: 163 FDSMSAKNSVVWTALVSGYASNGRSEEALQLFRSMPGRNLFAWTALISGLVNTG 216
>gi|449441061|ref|XP_004138302.1| PREDICTED: pentatricopeptide repeat-containing protein At1g59720,
mitochondrial-like [Cucumis sativus]
gi|449477575|ref|XP_004155061.1| PREDICTED: pentatricopeptide repeat-containing protein At1g59720,
mitochondrial-like [Cucumis sativus]
Length = 506
Score = 231 bits (589), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 137/463 (29%), Positives = 231/463 (49%), Gaps = 43/463 (9%)
Query: 1 MKQLLQIQAHLITSGLFFNNSFWTINLLKHSA--DFGSPDYTVLVFKCINNPGTFCVNAV 58
+K L Q+ A +I G F N F L+ A D G +Y V+VF I N F N +
Sbjct: 68 LKDLNQLHASIIRLG-FDQNLFVIGKLIDFCAVSDHGDMNYAVVVFDRIENADGFLWNTM 126
Query: 59 IKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGV 118
I+ + + FY +M++ G +++TF L + G + G H LK G+
Sbjct: 127 IRGFGRNRKLLMAFEFYKRMLEKGIAADNFTFSFLLKMTGQLGSIMLGKQLHVNILKLGL 186
Query: 119 DFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDI 178
D + V N+LI+MYG R D++ A LFD
Sbjct: 187 DSHVYVRNTLIHMYG-------------------------------RLKDVNIARNLFDE 215
Query: 179 MPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEG 238
+P+ ++V+WN +I + G +L LF +M++SG ++ T+ ++AC + G
Sbjct: 216 LPKTDLVAWNAVIDCHVSCGMYNEALDLFVQMLQSGVEPDEATLVVTISACSALGALDCG 275
Query: 239 RSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIH 298
R VH + I + +LID+Y+KC VE A+ +F++++ +N+V WN MI+G H
Sbjct: 276 RWVHSHVNSNDRGKTIAVFNSLIDMYAKCGAVEYAREMFNAVSGKNIVTWNTMIMGLATH 335
Query: 299 GKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIK 358
G E+ + LF+ ++ V +PD +TF+ V+CAC + EGR+YF M + I+
Sbjct: 336 GDAEDALTLFSNMLAERVE----TPDGVTFLAVLCACNYGGKVEEGRRYFDLMTKHFNIQ 391
Query: 359 PNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVE 418
P HY M ++ A EEA ++++ MP M +++W +LL+ C+ G V + E
Sbjct: 392 PTLKHYGSMVDILGRAGFVEEAYQLIKSMP-----MECNAVIWRTLLAACQMHGNVELGE 446
Query: 419 RLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKR 461
R++ +++ S Y L N+YA +GQW ++ + R+ M ++
Sbjct: 447 RVSSHVLEIVADHSSDYVLLANMYASSGQWNEMIKTRKSMHRK 489
Score = 88.2 bits (217), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 71/310 (22%), Positives = 128/310 (41%), Gaps = 38/310 (12%)
Query: 82 GFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCA 141
G+ F+ LF C+ + + H ++ G D L V+ LI+ CA
Sbjct: 50 GYFAKEQKFMFLFKQCSTLKDLNQ---LHASIIRLGFDQNLFVIGKLIDF--------CA 98
Query: 142 RNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPG 201
VS H GDM+ A +FD + + WN MI G+ ++
Sbjct: 99 ------------------VSDH---GDMNYAVVVFDRIENADGFLWNTMIRGFGRNRKLL 137
Query: 202 CSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALI 261
+ + ++ M++ G ++ T + +L G+ G+ +H ++ L ++ + LI
Sbjct: 138 MAFEFYKRMLEKGIAADNFTFSFLLKMTGQLGSIMLGKQLHVNILKLGLDSHVYVRNTLI 197
Query: 262 DLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSI 321
+Y + + V +A+ +FD + +LV WNA+I H G E + LF ++ +
Sbjct: 198 HMYGRLKDVNIARNLFDELPKTDLVAWNAVIDCHVSCGMYNEALDLFVQMLQ-----SGV 252
Query: 322 SPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAE 381
PDE T + I AC L GR + ++ A + + ++YA E A
Sbjct: 253 EPDEATLVVTISACSALGALDCGR-WVHSHVNSNDRGKTIAVFNSLIDMYAKCGAVEYAR 311
Query: 382 EILRKMPEDN 391
E+ + N
Sbjct: 312 EMFNAVSGKN 321
>gi|449437638|ref|XP_004136598.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g48910-like [Cucumis sativus]
Length = 564
Score = 231 bits (589), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 138/489 (28%), Positives = 253/489 (51%), Gaps = 47/489 (9%)
Query: 1 MKQLLQIQAHLITSGLFFNN-SFWTINLLKHSA--DFGSPDYTVLVFKCINNPGTFCVNA 57
M+ L Q+ AH++T L ++ +F ++ A FG+ +Y VF I +P F N+
Sbjct: 1 MRVLRQLHAHILTRPLPLSSFAFALSKIVAFCALSPFGNINYARSVFAQIPHPNIFSWNS 60
Query: 58 VIKAYSN-SCVPDQGVVFYLQMIKNGF-MPNSYTFVSLFGSCAKTGCVERGGMCHGLALK 115
+IK YS + + + + ++ + G+ +PNS+T + +CA G H LK
Sbjct: 61 LIKGYSQIHTLSKEPIFLFKKLTETGYPVPNSFTLAFVLKACAIVTAFGEGLQVHSHVLK 120
Query: 116 NGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHEL 175
+G L V SL+N YG + ++ A ++
Sbjct: 121 DGFGSSLFVQTSLVNFYG-------------------------------KCEEIGFARKV 149
Query: 176 FDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARF 235
F+ MP RN+V+W MISG+++ G +++LFREM K+G + + T+ SV++AC +
Sbjct: 150 FEEMPVRNLVAWTAMISGHARVGAVDEAMELFREMQKAGIQPDAMTLVSVVSACAVAGAL 209
Query: 236 NEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGH 295
+ G +H Y + + ++ L TAL+D+Y+KC +E A++VF M ++ W++MI+G
Sbjct: 210 DIGYWLHAYIEKYFVLTDLELSTALVDMYAKCGCIERAKQVFVHMPVKDTTAWSSMIMGF 269
Query: 296 CIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFY 355
HG ++ I F ++ V +PD +TF+ V+ AC L++ GR+++ M++F
Sbjct: 270 AYHGLAQDAIDAFQQMLETEV-----TPDHVTFLAVLSACAHGGLVSRGRRFWSLMLEF- 323
Query: 356 KIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVA 415
I+P+ HY C +L + L EEA I M + + W SLL C+ + +
Sbjct: 324 GIEPSVEHYGCKVDLLCRSGLVEEAYRITTTM-----KIPPNAATWRSLLMGCKKKKLLN 378
Query: 416 MVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLK 475
+ E +A+ ++++P + Y + N+Y+ QWE ++ +R++MK++ + +PGC +++
Sbjct: 379 LGEIVARYLLELEPLNAENYIMISNLYSSLSQWEKMSELRKVMKEKCIKPVPGCSSIEVD 438
Query: 476 EVVEKLKVG 484
VV + +G
Sbjct: 439 GVVHEFVMG 447
>gi|297815228|ref|XP_002875497.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297321335|gb|EFH51756.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 629
Score = 231 bits (589), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 150/507 (29%), Positives = 239/507 (47%), Gaps = 76/507 (14%)
Query: 43 VFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGC 102
VF + P N++I+A++ + P Q + +M + G +++T+ L +C+
Sbjct: 73 VFNQVQEPNVHLCNSLIRAHALNSQPYQAFFVFSEMQRFGLFADNFTYPFLLKACSGLSW 132
Query: 103 VERGGMCHGLALKNGVDFELPVMNSLINMY---GCFGAMDC------------------- 140
+ M H K G+ ++ V N+LI+ Y G G D
Sbjct: 133 LPVVKMMHNHIEKLGLSSDIYVPNALIDCYSRCGGLGVRDAMKLFEKMSERDTVSWNSML 192
Query: 141 -----------ARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNI 189
AR +F +M RDLISWN+++ G+ R +MS A ELF+ MPERN VSW+
Sbjct: 193 GGLVKAGELRDARKLFDEMPQRDLISWNTMLDGYARCREMSRAFELFEKMPERNTVSWST 252
Query: 190 MISGYSKSGN-------------PGCSL--------------------KLFREMMKSGFR 216
M+ GYSK+G+ P ++ KL +M+ SG R
Sbjct: 253 MVMGYSKAGDMEMARVMFDKMPFPAKNVVTWTIIIAGYAEKGLLKEADKLVDQMVASGLR 312
Query: 217 GNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRV 276
+ S+L AC S + G H +++L N + AL+D+Y+KC ++ A V
Sbjct: 313 FDAAAAISILAACAESGLLSLGMRAHSIIKKSNLNSNASVLNALLDMYAKCGSLKKAFDV 372
Query: 277 FDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACV 336
F+ M ++LV WN M+ G +HG +E I+LF+ + I PD++TFI V+C+C
Sbjct: 373 FNDMPKKDLVSWNTMLHGLGVHGHGKEAIELFSRM-----RKEGIWPDKVTFIAVLCSCN 427
Query: 337 RAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSF 396
A L+ EG YF M Y + P HY C+ +L +EA ++++ MP M
Sbjct: 428 HAGLIDEGIDYFYSMEKVYDLVPKVEHYGCLVDLLGRGGRLKEAIKVVQTMP-----MEP 482
Query: 397 ESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRE 456
++W +LL CR V + + + + V +DP D Y L N+YA A WE VA +R
Sbjct: 483 NVVIWGALLGACRMHNEVDIAKEVLDNLVKLDPSDPGNYTLLSNIYAAAEDWEGVADIRS 542
Query: 457 LMKKRRMGRMPGCRLVDLKEVVEKLKV 483
MK + + G V+L++ + + V
Sbjct: 543 KMKSMGVEKPSGASSVELEDGIHEFTV 569
Score = 65.5 bits (158), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 59/256 (23%), Positives = 113/256 (44%), Gaps = 20/256 (7%)
Query: 172 AHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGR 231
A +F+ + E NV N +I ++ + P + +F EM + G ++ T +L AC
Sbjct: 70 ALRVFNQVQEPNVHLCNSLIRAHALNSQPYQAFFVFSEMQRFGLFADNFTYPFLLKACSG 129
Query: 232 SARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEV--AQRVFDSMADRNLVCWN 289
+ + +H + + L +I + ALID YS+C + V A ++F+ M++R+ V WN
Sbjct: 130 LSWLPVVKMMHNHIEKLGLSSDIYVPNALIDCYSRCGGLGVRDAMKLFEKMSERDTVSWN 189
Query: 290 AMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFR 349
+M+ G G+ + KLF + D I++ ++ R ++ + F
Sbjct: 190 SMLGGLVKAGELRDARKLFDEMPQR---------DLISWNTMLDGYARCREMSRAFELFE 240
Query: 350 QMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCR 409
+M + N + M Y+ A E A + KMP N+ + W +++
Sbjct: 241 KMPE-----RNTVSWSTMVMGYSKAGDMEMARVMFDKMPFPAKNV----VTWTIIIAGYA 291
Query: 410 FQGAVAMVERLAKSFV 425
+G + ++L V
Sbjct: 292 EKGLLKEADKLVDQMV 307
Score = 44.7 bits (104), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 20/86 (23%), Positives = 45/86 (52%)
Query: 226 LTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNL 285
L + A N+ + +H +R +L ++ + LI S C++ +A RVF+ + + N+
Sbjct: 23 LQDLPKCANLNQVKQLHAQIIRRNLHQDLHIAPKLISALSLCRQTNLALRVFNQVQEPNV 82
Query: 286 VCWNAMILGHCIHGKPEEGIKLFTAL 311
N++I H ++ +P + +F+ +
Sbjct: 83 HLCNSLIRAHALNSQPYQAFFVFSEM 108
>gi|224092370|ref|XP_002309579.1| predicted protein [Populus trichocarpa]
gi|222855555|gb|EEE93102.1| predicted protein [Populus trichocarpa]
Length = 854
Score = 231 bits (589), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 124/443 (27%), Positives = 224/443 (50%), Gaps = 13/443 (2%)
Query: 70 QGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLI 129
+ + + QM +P+ V++ +C + G H + G+ + + N+L+
Sbjct: 351 ESLELFQQMRFENVIPDEVALVTVLSACVHLEDFDLGRSVHAFIVTYGMLVDGFLGNALL 410
Query: 130 NMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNI 189
++Y G +D A F Q+ + SWNS++ G RSG + A + F+ +PE+++VSWN
Sbjct: 411 DLYAKCGKLDEALRTFEQLPCKSAASWNSMLDGFCRSGGVDKARDFFNKIPEKDIVSWNT 470
Query: 190 MISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTS 249
M++ Y K S ++F +M S + + T+ S+L++C + N G V+ Y +
Sbjct: 471 MVNAYVKHDLFNESFEIFCKMQSSNVKPDKTTLISLLSSCAKVGALNHGIWVNVYIEKNE 530
Query: 250 LKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFT 309
+ + +L TALID+Y KC VE+A +F + ++N+ W AM+ + + G+ E I L+
Sbjct: 531 IGIDAMLGTALIDMYGKCGCVEMAYEIFTQIIEKNVFVWTAMMAAYAMEGQALEAIDLYL 590
Query: 310 ALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMAN 369
+ + PD +TFI ++ AC L+ EG KYF ++ FY I P HY CM +
Sbjct: 591 EM-----EERGVKPDHVTFIALLAACSHGGLVDEGYKYFNKLRSFYNIIPTIHHYGCMVD 645
Query: 370 LYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDP 429
L EE + + +MP + D +W SL+ CR V + E+ K +++DP
Sbjct: 646 LLGRVGHLEETVKFIERMPIEPD-----VSIWSSLMRACRSHHNVELAEQAFKQLIEIDP 700
Query: 430 QDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLKEVVEKLKVGHFWRG 489
+ + L N+YA AG+W+DV++VR + + + + PG +++ VV + +
Sbjct: 701 TNNGAHVLLSNIYADAGRWDDVSKVRTKLHETGVPKQPGFTMIEQNGVVHEFVASNLVSA 760
Query: 490 G---MKEEVNKMMECRQSRSLAT 509
M +++ + + +Q S T
Sbjct: 761 DILCMLQDIERRLLVKQELSDTT 783
Score = 158 bits (400), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 106/385 (27%), Positives = 185/385 (48%), Gaps = 35/385 (9%)
Query: 56 NAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALK 115
N +I Y + + + + +M+ +G +P+ T VSL +CAK +E G H +
Sbjct: 203 NTMISCYVLKGMYREALDLFDEMLVSGVLPDEITMVSLVSTCAKLKDLEMGKRLHLYIVD 262
Query: 116 NGVDFELPVMNSLINMYGCFGAMDCARNMFVQM--SPRDLISWNSIVSGHVRSGDMSAAH 173
N + ++N L++MY G MD A + + S D++ W ++VSG+V+S + A
Sbjct: 263 NKLWIRGSLLNCLVDMYSKCGKMDEAHGLLSRCDESEVDVVLWTTLVSGYVKSNKIDKAR 322
Query: 174 ELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSA 233
+LFD M ER++VSW M+SGY + G SL+LF++M ++ + +VL+AC
Sbjct: 323 QLFDKMNERSLVSWTTMMSGYVQGGYYCESLELFQQMRFENVIPDEVALVTVLSACVHLE 382
Query: 234 RFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMIL 293
F+ GRSVH + V + + L AL+DLY+KC K++ A R F+ + ++ WN+M+
Sbjct: 383 DFDLGRSVHAFIVTYGMLVDGFLGNALLDLYAKCGKLDEALRTFEQLPCKSAASWNSMLD 442
Query: 294 GHCIHGK-----------PEEGIKLFTALVNGTV---------------AGGSISPDEIT 327
G C G PE+ I + +VN V ++ PD+ T
Sbjct: 443 GFCRSGGVDKARDFFNKIPEKDIVSWNTMVNAYVKHDLFNESFEIFCKMQSSNVKPDKTT 502
Query: 328 FIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKM 387
I ++ +C + L G + I+ +I + + ++Y E A EI ++
Sbjct: 503 LISLLSSCAKVGALNHG-IWVNVYIEKNEIGIDAMLGTALIDMYGKCGCVEMAYEIFTQI 561
Query: 388 PEDNDNMSFESIMWVSLLSLCRFQG 412
E N +W ++++ +G
Sbjct: 562 IEKN------VFVWTAMMAAYAMEG 580
Score = 119 bits (297), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 111/477 (23%), Positives = 190/477 (39%), Gaps = 82/477 (17%)
Query: 1 MKQLLQIQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIK 60
+++ I AHLIT+ L + T +L + D + + P + N +++
Sbjct: 48 IREFSPIHAHLITANLIHDPEI-TSQVLAFLLSVNNLDCAHQILSYSHEPESIIWNTLLE 106
Query: 61 AYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDF 120
P + + Y M+ G + + TF L +C K V+ G HG LK G
Sbjct: 107 NKLKEGCPQEVLECYYHMVTQGVLLDISTFHFLIHACCKNFDVKLGSEVHGRILKCGFGR 166
Query: 121 ELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMP 180
+ N+L+ +Y G + +F +M+ RD+ISWN+++S +V G A +LFD
Sbjct: 167 NKSLNNNLMGLYSKCGKLKEVCQLFEKMTHRDVISWNTMISCYVLKGMYREALDLFD--- 223
Query: 181 ERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRS 240
EM+ SG ++ TM S+++ C + G+
Sbjct: 224 ----------------------------EMLVSGVLPDEITMVSLVSTCAKLKDLEMGKR 255
Query: 241 VHGYTVRTSLKPNIILDTALIDLYSKC--------------------------------- 267
+H Y V L L L+D+YSKC
Sbjct: 256 LHLYIVDNKLWIRGSLLNCLVDMYSKCGKMDEAHGLLSRCDESEVDVVLWTTLVSGYVKS 315
Query: 268 QKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEIT 327
K++ A+++FD M +R+LV W M+ G+ G E ++LF + V PDE+
Sbjct: 316 NKIDKARQLFDKMNERSLVSWTTMMSGYVQGGYYCESLELFQQMRFENVI-----PDEVA 370
Query: 328 FIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKM 387
+ V+ ACV E GR ++ + + F + +LYA +EA ++
Sbjct: 371 LVTVLSACVHLEDFDLGRSVHAFIVTYGMLVDGFLGN-ALLDLYAKCGKLDEALRTFEQL 429
Query: 388 PEDNDNMSFESIMWVSLLS-LCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYA 443
P + + W S+L CR G V++ F + +D + ++N Y
Sbjct: 430 PCKS------AASWNSMLDGFCRSGG----VDKARDFFNKIPEKDIVSWNTMVNAYV 476
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 48/231 (20%), Positives = 101/231 (43%), Gaps = 6/231 (2%)
Query: 56 NAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALK 115
N ++ AY + ++ + +M + P+ T +SL SCAK G + G + K
Sbjct: 469 NTMVNAYVKHDLFNESFEIFCKMQSSNVKPDKTTLISLLSSCAKVGALNHGIWVNVYIEK 528
Query: 116 NGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHEL 175
N + + + +LI+MYG G ++ A +F Q+ +++ W ++++ + G A +L
Sbjct: 529 NEIGIDAMLGTALIDMYGKCGCVEMAYEIFTQIIEKNVFVWTAMMAAYAMEGQALEAIDL 588
Query: 176 FDIMPERNV----VSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGR 231
+ M ER V V++ +++ S G K F ++ F T+
Sbjct: 589 YLEMEERGVKPDHVTFIALLAACSHGGLVDEGYKYFNKL--RSFYNIIPTIHHYGCMVDL 646
Query: 232 SARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMAD 282
R + R ++P++ + ++L+ VE+A++ F + +
Sbjct: 647 LGRVGHLEETVKFIERMPIEPDVSIWSSLMRACRSHHNVELAEQAFKQLIE 697
>gi|359483031|ref|XP_002271968.2| PREDICTED: pentatricopeptide repeat-containing protein At4g02750
[Vitis vinifera]
Length = 788
Score = 231 bits (589), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 133/446 (29%), Positives = 239/446 (53%), Gaps = 33/446 (7%)
Query: 56 NAVIKAYSNSCVPDQGVVFYLQM----------IKNGF-----------MPNSYTFVSLF 94
NA+I AY +C D+ + +++M + NG+ + N + ++
Sbjct: 268 NAMIAAYVQNCHVDEAISLFMEMPEKNSISWTTVINGYVRMGKLDEARQLLNQMPYRNVA 327
Query: 95 GSCAK-TGCVERGGMCHGLALKNGVDF-ELPVMNSLINMYGCFGAMDCARNMFVQMSPRD 152
A +G V+ M + N + ++ N++I Y G MD A ++F QM +D
Sbjct: 328 AQTAMISGYVQNKRMDDARQIFNQISIRDVVCWNTMIAGYSQCGRMDEALHLFKQMVKKD 387
Query: 153 LISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMK 212
++SWN++V+ + + G M AA ++F+ M E+N+VSWN +ISG +++G+ +LK F M
Sbjct: 388 IVSWNTMVASYAQVGQMDAAIKIFEEMKEKNIVSWNSLISGLTQNGSYLDALKSFMLMGH 447
Query: 213 SGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEV 272
G + + T A L++C A G+ +H +++ ++ + ALI +Y+KC +
Sbjct: 448 EGQKPDQSTFACGLSSCAHLAALQVGKQLHQLVMKSGYATDLFVSNALITMYAKCGSISS 507
Query: 273 AQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVI 332
A+ +F + ++V WN++I + ++G E +KLF + V G ++PDE+TF+G++
Sbjct: 508 AELLFKDIDHFDVVSWNSLIAAYALNGNGREALKLFHKM---EVEG--VAPDEVTFVGIL 562
Query: 333 CACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDND 392
AC L+ +G K F+ M+ Y I+P HY CM +L A EEA +++R M
Sbjct: 563 SACSHVGLIDQGLKLFKCMVQAYNIEPLAEHYACMVDLLGRAGRLEEAFQLVRGM----- 617
Query: 393 NMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVA 452
++ + +W +LL CR G + + + A+ ++ +P S Y L N+ A AG+W++VA
Sbjct: 618 KINANAGIWGALLGACRIHGNLELAKFAAEKLLEFEPHKTSNYVLLSNMQAEAGRWDEVA 677
Query: 453 RVRELMKKRRMGRMPGCRLVDLKEVV 478
RVR LMK++ + PG ++L+ V
Sbjct: 678 RVRRLMKEKGAEKQPGWSWIELQNRV 703
Score = 105 bits (263), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 78/303 (25%), Positives = 146/303 (48%), Gaps = 40/303 (13%)
Query: 126 NSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVV 185
N I G G +D A +F M+ ++ ++ NS++S ++G +S A +LFD MP+RN+V
Sbjct: 19 NLKITQLGKSGQIDEAIKVFQHMTHKNTVTHNSMISAFAKNGRISDARQLFDGMPQRNIV 78
Query: 186 SWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYT 245
SWN MI+ Y + + +LF +M + ++T R+ + R++
Sbjct: 79 SWNSMIAAYLHNDRVEEARQLFDKMPTRDLY----SWTLMITCYTRNGELAKARNLFNL- 133
Query: 246 VRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGI 305
K N + A++ Y+K ++ + A+R+FD+M ++LV WN+M+ G+ +G+ G+
Sbjct: 134 --LPYKWNPVCCNAMVAGYAKNRQFDEARRLFDAMPAKDLVSWNSMLTGYTRNGEMRLGL 191
Query: 306 KLFTA-----------LVNGTVAGGSI-----------SPDEITFIGVICACVRAELLTE 343
+ F +V+G V G + +P+ ++++ ++C R + E
Sbjct: 192 QFFEEMAERDVVSWNLMVDGFVEVGDLNSSWEFFEKIPNPNTVSWVTMLCGFARFGKIAE 251
Query: 344 GRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVS 403
R+ F QM I+ N + M Y +EA + +MPE N SI W +
Sbjct: 252 ARRLFDQM----PIR-NVVAWNAMIAAYVQNCHVDEAISLFMEMPEKN------SISWTT 300
Query: 404 LLS 406
+++
Sbjct: 301 VIN 303
Score = 105 bits (261), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 106/458 (23%), Positives = 195/458 (42%), Gaps = 96/458 (20%)
Query: 35 GSPDYTVLVFKCINNPGTFCVNAVIKAYSNSC-----------VPDQGVVFYLQMIKNGF 83
G D + VF+ + + T N++I A++ + +P + +V + MI +
Sbjct: 29 GQIDEAIKVFQHMTHKNTVTHNSMISAFAKNGRISDARQLFDGMPQRNIVSWNSMIA-AY 87
Query: 84 MPNSYTFVS-----------LFGSCAKTGCVERGG-MCHGLALKNGVDFEL-PVM-NSLI 129
+ N + L+ C R G + L N + ++ PV N+++
Sbjct: 88 LHNDRVEEARQLFDKMPTRDLYSWTLMITCYTRNGELAKARNLFNLLPYKWNPVCCNAMV 147
Query: 130 NMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNI 189
Y D AR +F M +DL+SWNS+++G+ R+G+M + F+ M ER+VVSWN+
Sbjct: 148 AGYAKNRQFDEARRLFDAMPAKDLVSWNSMLTGYTRNGEMRLGLQFFEEMAERDVVSWNL 207
Query: 190 MISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTS 249
M+ G+ + G+ S + F ++ N T++ V CG
Sbjct: 208 MVDGFVEVGDLNSSWEFFEKI------PNPNTVSWVTMLCG------------------- 242
Query: 250 LKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFT 309
+++ K+ A+R+FD M RN+V WNAMI + + +E I LF
Sbjct: 243 --------------FARFGKIAEARRLFDQMPIRNVVAWNAMIAAYVQNCHVDEAISLFM 288
Query: 310 ALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMAN 369
+ + I++ VI VR L E R+ QM Y+ N A M +
Sbjct: 289 EMP---------EKNSISWTTVINGYVRMGKLDEARQLLNQMP--YR---NVAAQTAMIS 334
Query: 370 LYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLL---SLC-RFQGAVAMVERLAKSFV 425
Y + ++A +I ++ + + W +++ S C R A+ + +++ K
Sbjct: 335 GYVQNKRMDDARQIFNQISIR------DVVCWNTMIAGYSQCGRMDEALHLFKQMVK--- 385
Query: 426 DMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRM 463
+D + ++ YA GQ + ++ E MK++ +
Sbjct: 386 ----KDIVSWNTMVASYAQVGQMDAAIKIFEEMKEKNI 419
>gi|356545004|ref|XP_003540936.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g59200, chloroplastic-like [Glycine max]
Length = 629
Score = 231 bits (589), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 137/499 (27%), Positives = 240/499 (48%), Gaps = 11/499 (2%)
Query: 2 KQLLQIQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKA 61
K + I H I + + F LL+ D+ + +F+C NP + ++I
Sbjct: 41 KHVQSIHCHAIKTRTS-QDPFVAFELLRVYCKVNYIDHAIKLFRCTQNPNVYLYTSLIDG 99
Query: 62 YSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFE 121
+ + + + QM++ + ++Y ++ +C + G HGL LK+G+ +
Sbjct: 100 FVSFGSYTDAINLFCQMVRKHVLADNYAVTAMLKACVLQRALGSGKEVHGLVLKSGLGLD 159
Query: 122 LPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPE 181
+ L+ +YG G ++ AR MF M RD+++ ++ G + A E+F+ M
Sbjct: 160 RSIALKLVELYGKCGVLEDARKMFDGMPERDVVACTVMIGSCFDCGMVEEAIEVFNEMGT 219
Query: 182 RNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSV 241
R+ V W ++I G ++G L++FREM G N+ T VL+AC + GR +
Sbjct: 220 RDTVCWTMVIDGLVRNGEFNRGLEVFREMQVKGVEPNEVTFVCVLSACAQLGALELGRWI 279
Query: 242 HGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKP 301
H Y + ++ N + ALI++YS+C ++ AQ +FD + +++ +N+MI G +HGK
Sbjct: 280 HAYMRKCGVEVNRFVAGALINMYSRCGDIDEAQALFDGVRVKDVSTYNSMIGGLALHGKS 339
Query: 302 EEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNF 361
E ++LF+ ++ V P+ ITF+GV+ AC L+ G + F M + I+P
Sbjct: 340 IEAVELFSEMLKERV-----RPNGITFVGVLNACSHGGLVDLGGEIFESMEMIHGIEPEV 394
Query: 362 AHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLA 421
HY CM ++ EEA + + +M + D+ M SLLS C+ + M E++A
Sbjct: 395 EHYGCMVDILGRVGRLEEAFDFIGRMGVEADDK-----MLCSLLSACKIHKNIGMGEKVA 449
Query: 422 KSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLKEVVEKL 481
K + D + L N YA G+W A VRE M+K + + PGC +++ + +
Sbjct: 450 KLLSEHYRIDSGSFIMLSNFYASLGRWSYAAEVREKMEKGGIIKEPGCSSIEVNNAIHEF 509
Query: 482 KVGHFWRGGMKEEVNKMME 500
G K K+ E
Sbjct: 510 FSGDLRHPERKRIYKKLEE 528
>gi|225439799|ref|XP_002273893.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g37310-like [Vitis vinifera]
Length = 667
Score = 231 bits (589), Expect = 7e-58, Method: Compositional matrix adjust.
Identities = 133/434 (30%), Positives = 228/434 (52%), Gaps = 13/434 (2%)
Query: 42 LVFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKN-GFMPNSYTFVSLFGSCAKT 100
++F +++ N++I YS + Y +M+ + G PN T VS+ +CA+T
Sbjct: 195 ILFDRMHDRDIVSWNSMIAGYSQGGFYEDCKELYRKMLDSTGLRPNGVTVVSVLQACAQT 254
Query: 101 GCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIV 160
+ G H ++ V+ ++ NSLI +Y G++D AR +F +MS +D +++ SIV
Sbjct: 255 NDLVFGMKVHQFIIERKVEMDVSAHNSLIGLYAKCGSLDYARELFNEMSNKDEVTYGSIV 314
Query: 161 SGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDK 220
SG++ G + A +LF M + +WN +ISG ++ L+L +EM + GFR N
Sbjct: 315 SGYMTHGFVDKAMDLFREMKNPRLSTWNAVISGLVQNNCNEGILELVQEMQEFGFRPNAV 374
Query: 221 TMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSM 280
T++S+L + G+++H Y +R NI + T++ID Y+K + AQ VFD
Sbjct: 375 TLSSILPTFSCFSNLKGGKAIHAYAIRNGYAHNIYVATSIIDAYAKLGFLRGAQWVFDQS 434
Query: 281 ADRNLVCWNAMILGHCIHGKPEEGIKLF-TALVNGTVAGGSISPDEITFIGVICACVRAE 339
DR+L+ W A+I + HG ++LF L NGT PD +TF V+ AC +
Sbjct: 435 KDRSLIVWTAIISAYSAHGDANAALRLFGDMLSNGT------QPDPVTFTAVLAACAHSG 488
Query: 340 LLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESI 399
++ E K F +M Y +P HY CM + + A + EA E + KMP + + +
Sbjct: 489 MVNEAWKIFDEMFLKYGFQPCVEHYACMVGVLSRAGMLSEAAEFICKMPIEPN-----AK 543
Query: 400 MWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMK 459
+W +LL+ G V + + + +M+P++ Y + N+Y+ AG+WE+ +RE MK
Sbjct: 544 VWGALLNGVSVSGDVELGKFVCDHLFNMEPENTGNYVIMANLYSQAGRWEEAENIREKMK 603
Query: 460 KRRMGRMPGCRLVD 473
K + ++PG ++
Sbjct: 604 KIGLKKIPGTSWIE 617
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 68/266 (25%), Positives = 134/266 (50%), Gaps = 15/266 (5%)
Query: 141 ARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSG-- 198
AR + ++P + ++ + +++ + +S + AH++FD + ++N+ SWN M+ GYS
Sbjct: 58 ARIVLSSLTPDNFLA-SKLITFYSKSNHLYEAHKVFDKILDKNIFSWNAMLIGYSIHNMH 116
Query: 199 -NPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNE---GRSVHGYTVRTSLKPNI 254
+ L + ++ T+ VL A S F + + V + +R +I
Sbjct: 117 VHTLNLLSSLLPSYSLTLKPDNFTITCVLKAL--SVLFPDSILAKEVQCFVLRHGFDSDI 174
Query: 255 ILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNG 314
+ ALI YS+C + +A+ +FD M DR++V WN+MI G+ G E+ +L+ +++
Sbjct: 175 FVVNALITYYSRCDEYGIARILFDRMHDRDIVSWNSMIAGYSQGGFYEDCKELYRKMLDS 234
Query: 315 TVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGA 374
T + P+ +T + V+ AC + L G K Q I K++ + + + + LYA
Sbjct: 235 T----GLRPNGVTVVSVLQACAQTNDLVFGMK-VHQFIIERKVEMDVSAHNSLIGLYAKC 289
Query: 375 ELTEEAEEILRKMPEDNDNMSFESIM 400
+ A E+ +M + D +++ SI+
Sbjct: 290 GSLDYARELFNEM-SNKDEVTYGSIV 314
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 41/74 (55%)
Query: 225 VLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRN 284
++ C + + +H V +SL P+ L + LI YSK + A +VFD + D+N
Sbjct: 40 LIQHCSDHRLLRQAKQLHARIVLSSLTPDNFLASKLITFYSKSNHLYEAHKVFDKILDKN 99
Query: 285 LVCWNAMILGHCIH 298
+ WNAM++G+ IH
Sbjct: 100 IFSWNAMLIGYSIH 113
>gi|224125332|ref|XP_002329779.1| predicted protein [Populus trichocarpa]
gi|222870841|gb|EEF07972.1| predicted protein [Populus trichocarpa]
Length = 585
Score = 231 bits (589), Expect = 7e-58, Method: Compositional matrix adjust.
Identities = 143/476 (30%), Positives = 243/476 (51%), Gaps = 46/476 (9%)
Query: 4 LLQIQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAYS 63
L Q+ AH+I SG + S T LL + GS YT +F + NP +F ++IK+ S
Sbjct: 28 LHQVHAHIIVSGYGRSRSLLT-KLLNLACAAGSISYTRQIFLAVPNPDSFLFTSLIKSTS 86
Query: 64 NSC-VPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFEL 122
S + FY +M+ + P++YTF S+ SCA ++ G + HG L +G ++
Sbjct: 87 KSHNFSIYSLYFYSRMVLSNVSPSNYTFTSVIKSCADLSALKHGRVVHGHVLVHGFGLDV 146
Query: 123 PVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPER 182
V +L+ +YG + GD+ A ++FD + ER
Sbjct: 147 YVQAALVALYG-------------------------------KCGDLINARKVFDKIRER 175
Query: 183 NVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVH 242
++V+WN MISGY ++G ++ LF M ++G + T SVL+AC F+ G VH
Sbjct: 176 SIVAWNSMISGYEQNGFAKEAIGLFDRMKETGVEPDSATFVSVLSACAHLGAFSLGCWVH 235
Query: 243 GYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPE 302
Y V L N++L T+LI++Y +C V A+ VFDSM +RN+V W AMI G+ +G
Sbjct: 236 EYIVGNGLDLNVVLGTSLINMYIRCGNVSKAREVFDSMKERNVVAWTAMISGYGTNGYGS 295
Query: 303 EGIKLFTAL-VNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNF 361
+ ++LF + NG + P+ ITF+ V+ AC A L+ EGR+ F + + Y + P
Sbjct: 296 QAVELFHEMRRNG------LFPNSITFVAVLSACAHAGLVNEGRRLFASIREEYHLVPGV 349
Query: 362 AHYWCMANLYAGAELTEEAEEILR-KMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERL 420
H C+ ++ A L +EA ++ ++PE+ + ++L C+ + ++
Sbjct: 350 EHNVCLVDMLGRAGLLDEAYNFIKEEIPENP-----APAILTAMLGACKMHKNFDLGAQV 404
Query: 421 AKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLKE 476
A+ + +P++ + Y L N+YA+AG+ + V VR M ++ + + G V++ +
Sbjct: 405 AEHLLAAEPENPAHYVILSNIYALAGRMDQVEIVRNNMIRKCLKKQVGYSTVEVDQ 460
>gi|449433141|ref|XP_004134356.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Cucumis sativus]
Length = 654
Score = 231 bits (589), Expect = 7e-58, Method: Compositional matrix adjust.
Identities = 136/480 (28%), Positives = 238/480 (49%), Gaps = 47/480 (9%)
Query: 6 QIQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSNS 65
Q+ +++ S L+ + +N+ D S + +F+ + + ++I Y +
Sbjct: 104 QVVKYMLHSDLYIETTL--LNMYAACGDLKSARF---LFERMGHRNKVVWTSMISGYMKN 158
Query: 66 CVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVM 125
P++ ++ Y +M ++GF P+ T +L +CA+ + G H + + +
Sbjct: 159 HCPNEALLLYKKMEEDGFSPDEVTMATLVSACAELKDLGVGMKLHSHIREMDMKICAVLG 218
Query: 126 NSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVV 185
++L+NMY + GD+ A ++FD + +++V
Sbjct: 219 SALVNMYA-------------------------------KCGDLKTARQVFDKLSDKDVY 247
Query: 186 SWNIMISGYSKSGNPGCSLKLFREMMK-SGFRGNDKTMASVLTACGRSARFNEGRSVHGY 244
+W+ +I GY K+ +L+LFRE+ S R N+ T+ +V++AC + GR VH Y
Sbjct: 248 AWSALIFGYVKNNRSTEALQLFREVAGGSNMRPNEVTILAVISACAQLGDLETGRWVHDY 307
Query: 245 TVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEG 304
RT ++ L+ +LID++SKC ++ A+R+FDSM+ ++L+ WN+M+ G +HG E
Sbjct: 308 ITRTQKGHSVSLNNSLIDMFSKCGDIDAAKRIFDSMSYKDLISWNSMVNGFALHGLGREA 367
Query: 305 IKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHY 364
+ F L+ T + PDEITFIGV+ AC A L+ EG+K F ++ Y ++ HY
Sbjct: 368 LAQFR-LMQTT----DLQPDEITFIGVLTACSHAGLVQEGKKLFYEIEALYGVRLKSEHY 422
Query: 365 WCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSF 424
CM +L A L EA E +R MP D +W S+L CR + + E A+
Sbjct: 423 GCMVDLLCRAGLLAEAREFIRVMPLQPDGA-----IWGSMLGACRVYNNLELGEEAARFL 477
Query: 425 VDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLKEVVEKLKVG 484
+ ++P + Y L N+YA W +V +VRELM ++ + + PGC V + + G
Sbjct: 478 LKLEPTNDGVYILLSNIYAKRKMWNEVKKVRELMNEKGIQKTPGCSSVVIDNIAHSFLAG 537
Score = 144 bits (363), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 89/323 (27%), Positives = 161/323 (49%), Gaps = 40/323 (12%)
Query: 27 LLKHSADFGS--PDYTVLVFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGF- 83
L+ H GS Y VF N++++A+ NS +P + + Y +M++
Sbjct: 16 LIAHVLSMGSLGVGYAYSVFAHTRELDVLTWNSMLRAFVNSNMPRRALQSYTEMLERSRN 75
Query: 84 MPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARN 143
+P+ +TF SL CA + G + HG +K + +L + +L+NMY G + AR
Sbjct: 76 VPDRFTFPSLLKGCALLLEFKVGKVLHGQVVKYMLHSDLYIETTLLNMYAACGDLKSARF 135
Query: 144 MFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCS 203
+F +M R+ + W S++S GY K+ P +
Sbjct: 136 LFERMGHRNKVVWTSMIS-------------------------------GYMKNHCPNEA 164
Query: 204 LKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDL 263
L L+++M + GF ++ TMA++++AC G +H + +K +L +AL+++
Sbjct: 165 LLLYKKMEEDGFSPDEVTMATLVSACAELKDLGVGMKLHSHIREMDMKICAVLGSALVNM 224
Query: 264 YSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGS-IS 322
Y+KC ++ A++VFD ++D+++ W+A+I G+ + + E ++LF VAGGS +
Sbjct: 225 YAKCGDLKTARQVFDKLSDKDVYAWSALIFGYVKNNRSTEALQLFR-----EVAGGSNMR 279
Query: 323 PDEITFIGVICACVRAELLTEGR 345
P+E+T + VI AC + L GR
Sbjct: 280 PNEVTILAVISACAQLGDLETGR 302
Score = 91.7 bits (226), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 65/263 (24%), Positives = 126/263 (47%), Gaps = 20/263 (7%)
Query: 145 FVQMSPRDLISWNSIVSGHVRSGDMSA--AHELFDIMPERNVVSWNIMISGYSKSGNPGC 202
F+ P S N +++ + G + A+ +F E +V++WN M+ + S P
Sbjct: 6 FIHHKP----SLNKLIAHVLSMGSLGVGYAYSVFAHTRELDVLTWNSMLRAFVNSNMPRR 61
Query: 203 SLKLFREMMKSGFRGNDK-TMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALI 261
+L+ + EM++ D+ T S+L C F G+ +HG V+ L ++ ++T L+
Sbjct: 62 ALQSYTEMLERSRNVPDRFTFPSLLKGCALLLEFKVGKVLHGQVVKYMLHSDLYIETTLL 121
Query: 262 DLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSI 321
++Y+ C ++ A+ +F+ M RN V W +MI G+ + P E + L+ +
Sbjct: 122 NMYAACGDLKSARFLFERMGHRNKVVWTSMISGYMKNHCPNEALLLYKKMEE-----DGF 176
Query: 322 SPDEITFIGVICACVRAELLTEGRK---YFRQMIDFYKIKPNFAHYWCMANLYAGAELTE 378
SPDE+T ++ AC + L G K + R+M +K + N+YA +
Sbjct: 177 SPDEVTMATLVSACAELKDLGVGMKLHSHIREM----DMKICAVLGSALVNMYAKCGDLK 232
Query: 379 EAEEILRKMPEDNDNMSFESIMW 401
A ++ K+ D D ++ ++++
Sbjct: 233 TARQVFDKLS-DKDVYAWSALIF 254
>gi|293332303|ref|NP_001170755.1| uncharacterized protein LOC100384848 [Zea mays]
gi|238007354|gb|ACR34712.1| unknown [Zea mays]
Length = 464
Score = 231 bits (589), Expect = 7e-58, Method: Compositional matrix adjust.
Identities = 136/451 (30%), Positives = 223/451 (49%), Gaps = 24/451 (5%)
Query: 49 NPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGM 108
+PG A+ +A++ S Q + + MI +G +P++ +C T + GM
Sbjct: 3 DPGLVSRTAMARAHAASGQAAQALAVFRDMIADGVLPDNVALAVALAACHTTASLPAAGM 62
Query: 109 C---------HGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSI 159
H + + +G+ ++ V LI +YG +G + +R +F M R +SWN++
Sbjct: 63 AAARRPGKMVHAIIVTSGIVPDVFVSTELIRVYGEYGELALSRRLFDAMPVRSTVSWNAM 122
Query: 160 VSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSG---FR 216
V ++R ++ A+ELF MP R+VVSWN MI+GYS G +L+L R+M+
Sbjct: 123 VHQYIRHSNVGDAYELFLAMPRRDVVSWNTMIAGYSLVGRFMEALELSRQMISPSSCPVY 182
Query: 217 GNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRV 276
N TM++VL AC + G VH + R + + LD +LID+Y KC +E A +V
Sbjct: 183 PNGPTMSTVLAACAGAGCLETGIWVHAFVDRNRMNDDGSLDRSLIDMYVKCGSIEKALQV 242
Query: 277 FDSMAD-RNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICAC 335
F+ + R+L W MI G +HG+ + +K+F G + I PD++T +GV+ AC
Sbjct: 243 FEKAPEARDLYSWTTMICGLAMHGRAADALKMF-----GMMQDNGIHPDDVTLVGVLNAC 297
Query: 336 VRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMS 395
L+ EG ++F + + Y I P HY C+ +L +EA I+R M M
Sbjct: 298 AHCGLVDEGLRHFYSL-EKYAITPKIEHYGCVIDLLGRVGRLQEAYNIIRTM-----RMK 351
Query: 396 FESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVR 455
+++W + L+ C+ V + E A +DP D L ++YA W +AR R
Sbjct: 352 PNAVIWGAFLNACKVHSNVELGEIAAAELTRLDPGDPWAKVMLSSLYAKLQDWNSLARER 411
Query: 456 ELMKKRRMGRMPGCRLVDLKEVVEKLKVGHF 486
M ++ + PGC ++L V + G F
Sbjct: 412 REMNNLQIKKTPGCSSIELDGEVHEFVAGGF 442
Score = 79.0 bits (193), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 63/261 (24%), Positives = 115/261 (44%), Gaps = 41/261 (15%)
Query: 179 MPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGND----------KTMASVLTA 228
MP+ +VS M ++ SG +L +FR+M+ G ++ T AS L A
Sbjct: 1 MPDPGLVSRTAMARAHAASGQAAQALAVFRDMIADGVLPDNVALAVALAACHTTAS-LPA 59
Query: 229 CGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCW 288
G +A G+ VH V + + P++ + T LI +Y + ++ +++R+FD+M R+ V W
Sbjct: 60 AGMAAARRPGKMVHAIIVTSGIVPDVFVSTELIRVYGEYGELALSRRLFDAMPVRSTVSW 119
Query: 289 NAMILGHCIHGKPEEGIKLFTALV-------NGTVAGGS--------------------- 320
NAM+ + H + +LF A+ N +AG S
Sbjct: 120 NAMVHQYIRHSNVGDAYELFLAMPRRDVVSWNTMIAGYSLVGRFMEALELSRQMISPSSC 179
Query: 321 -ISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEE 379
+ P+ T V+ AC A L G + +D ++ + + + ++Y E+
Sbjct: 180 PVYPNGPTMSTVLAACAGAGCLETG-IWVHAFVDRNRMNDDGSLDRSLIDMYVKCGSIEK 238
Query: 380 AEEILRKMPEDNDNMSFESIM 400
A ++ K PE D S+ +++
Sbjct: 239 ALQVFEKAPEARDLYSWTTMI 259
>gi|449437962|ref|XP_004136759.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Cucumis sativus]
Length = 591
Score = 231 bits (589), Expect = 7e-58, Method: Compositional matrix adjust.
Identities = 138/479 (28%), Positives = 240/479 (50%), Gaps = 40/479 (8%)
Query: 6 QIQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSNS 65
QI A I +G+ N + + L++ + GS VF + +I+A++ +
Sbjct: 131 QIHARSIKTGMVGFNVYVSNTLMRLYSVCGSIHDVQKVFDECPHRDLVSWTTLIQAFTKA 190
Query: 66 CVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVM 125
+ + V +++M + T V + +C+ G + G H
Sbjct: 191 GLYSRAVEAFMEMCDLRLRADGRTLVVVLSACSNLGDLNLGQKVH--------------- 235
Query: 126 NSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVV 185
S I Y +D ++FV N+++ +++ D+++A+++FD MP +NVV
Sbjct: 236 -SYIRHY-----IDMKADVFV---------GNALLDMYLKCDDLNSAYKVFDEMPVKNVV 280
Query: 186 SWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYT 245
+WN MISG + G +L FR M G + ++ T+ VL +C G+ VH Y
Sbjct: 281 TWNAMISGLAYQGRYREALDTFRMMQDKGVKPDEVTLVGVLNSCANLGVLEIGKWVHAYM 340
Query: 246 VRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGI 305
R + + + AL+D+Y+KC ++ A RVF+SM R++ + AMI G +HG+
Sbjct: 341 RRNHILADKFVGNALLDMYAKCGSIDEAFRVFESMKRRDVYSYTAMIFGLALHGEANWAF 400
Query: 306 KLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYW 365
++F+ + I P+E+TF+G++ AC L+ EG+KYF QM D YK++P HY
Sbjct: 401 QVFSEMFR-----VGIEPNEVTFLGLLMACSHGGLVAEGKKYFFQMSDKYKLRPQAEHYG 455
Query: 366 CMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFV 425
CM +L A L +EAEEI+ KM D + +LL CR G V + E + +
Sbjct: 456 CMIDLLGRAGLVKEAEEIIHKMEIRPDVFACG-----ALLGACRIHGNVDIGESVMQKLT 510
Query: 426 DMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLKEVVEKLKVG 484
++DP + Y + N+Y+ +W+D ++R+ MK ++M + PGC L+++ VV + + G
Sbjct: 511 ELDPDEEGTYILMTNLYSSVHRWKDALKIRKTMKNKKMRKTPGCSLIEVDGVVHEFRKG 569
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 53/229 (23%), Positives = 96/229 (41%), Gaps = 18/229 (7%)
Query: 188 NIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVR 247
N +I S++ ++ EM+ G + T+ VL A EG+ +H +++
Sbjct: 79 NAIIRSISRNSINLSPMEFLNEMLVVGLEPDGFTIPLVLKALALIQGIREGQQIHARSIK 138
Query: 248 TSLKP-NIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIK 306
T + N+ + L+ LYS C + Q+VFD R+LV W +I G ++
Sbjct: 139 TGMVGFNVYVSNTLMRLYSVCGSIHDVQKVFDECPHRDLVSWTTLIQAFTKAGLYSRAVE 198
Query: 307 LFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRK---YFRQMIDFYKIKPNFAH 363
F + + + D T + V+ AC L G+K Y R ID +K +
Sbjct: 199 AFMEMCDL-----RLRADGRTLVVVLSACSNLGDLNLGQKVHSYIRHYID---MKADVFV 250
Query: 364 YWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQG 412
+ ++Y + A ++ +MP N + W +++S +QG
Sbjct: 251 GNALLDMYLKCDDLNSAYKVFDEMPVKN------VVTWNAMISGLAYQG 293
>gi|298204424|emb|CBI16904.3| unnamed protein product [Vitis vinifera]
Length = 843
Score = 231 bits (589), Expect = 8e-58, Method: Compositional matrix adjust.
Identities = 132/479 (27%), Positives = 235/479 (49%), Gaps = 61/479 (12%)
Query: 43 VFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGC 102
+F + N NA+I Y+ S D+G+ + + F +CA
Sbjct: 332 LFNSLPNHNLQSYNAIIVGYARS---DKGLGL-----------DEVSLSGAFRACAVIKG 377
Query: 103 VERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSG 162
G HGL++K+ + V N++++MYG GA+ A +F +M RD +SWN+I++
Sbjct: 378 DLEGLQVHGLSMKSLCQSNICVANAILDMYGKCGALVEACLVFEEMVSRDAVSWNAIIAA 437
Query: 163 HVRSGD-------------------------------------MSAAHELFDIMPERNVV 185
H ++G+ M A +L D + E+ VV
Sbjct: 438 HEQNGNEEKTLSLFIHNRIIKSRLGLDSFVGIALIDMYSKCGMMEKAEKLHDRLAEQTVV 497
Query: 186 SWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYT 245
SWN +ISG+S + K F +M++ G ++ T A++L C G+ +H
Sbjct: 498 SWNAIISGFSLQKQSEEAQKTFSKMLEMGVDPDNFTYATILDTCANLVTVELGKQIHAQI 557
Query: 246 VRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGI 305
++ L+ + + + L+D+YSKC ++ Q +F+ +R+ V WNAM+ G+ HG EE +
Sbjct: 558 IKKELQSDAYISSTLVDMYSKCGNMQDFQLIFEKAPNRDFVTWNAMVCGYAQHGLGEEAL 617
Query: 306 KLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYW 365
K+F + ++ P+ TF+ V+ AC L+ +G YF M+ Y + P HY
Sbjct: 618 KIFEYM-----QLENVKPNHATFLAVLRACGHMGLVEKGLHYFHSMLSNYGLDPQLEHYS 672
Query: 366 CMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFV 425
C+ ++ + +A E++ MP + D +++W +LLS+C+ G V + E+ A S +
Sbjct: 673 CVVDIMGRSGQVSKALELIEGMPFEAD-----AVIWRTLLSICKIHGNVEVAEKAAYSIL 727
Query: 426 DMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLKEVVEKLKVG 484
++P+D + Y L N+YA AG W +V ++R++M+ + + PGC +++K V VG
Sbjct: 728 QLEPEDSAAYVLLSNIYANAGMWNEVTKLRKMMRFNGLKKEPGCSWIEIKSEVHAFLVG 786
Score = 135 bits (341), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 87/307 (28%), Positives = 150/307 (48%), Gaps = 14/307 (4%)
Query: 89 TFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQM 148
TF +F C+ + G H + + V N LI MY ++ A +F M
Sbjct: 44 TFSHIFQECSDRKALCPGKQAHARMILTEFKPTVFVTNCLIQMYIKCSDLEFAFKVFDGM 103
Query: 149 SPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFR 208
RD +SWN+++ G+ GD+ A +LFD MPER+VVSWN +ISGY +G+ + +F
Sbjct: 104 PQRDTVSWNAMLFGYAGRGDIGVAQKLFDAMPERDVVSWNSLISGYLHNGDHRKVIDVFL 163
Query: 209 EMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQ 268
+M + G + T A VL +C G +HG V+ +++ +AL+D+Y+KC+
Sbjct: 164 QMGRMGTVFDRTTFAVVLKSCSSLEDHGGGIQIHGLAVKMGFDCDVVTGSALLDMYAKCK 223
Query: 269 KVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITF 328
K++ + + F SM ++N V W+A+I G + G++LF + AG +S + TF
Sbjct: 224 KLDCSIQFFHSMPEKNWVSWSAIIAGCVQNDDLRGGLELFKEMQK---AGVGVS--QSTF 278
Query: 329 IGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMA----NLYAGAELTEEAEEIL 384
V +C L G + + + +K +F + ++Y +A+++
Sbjct: 279 ASVFRSCAGLSALRLGSQ-----LHGHALKTDFGTDVVIGTATLDMYMKCNNLSDAQKLF 333
Query: 385 RKMPEDN 391
+P N
Sbjct: 334 NSLPNHN 340
Score = 113 bits (283), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 74/287 (25%), Positives = 138/287 (48%), Gaps = 52/287 (18%)
Query: 56 NAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALK 115
N++I Y ++ + + +LQM + G + + TF + SC+ G HGLA+K
Sbjct: 143 NSLISGYLHNGDHRKVIDVFLQMGRMGTVFDRTTFAVVLKSCSSLEDHGGGIQIHGLAVK 202
Query: 116 NGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHEL 175
G D ++ ++L++MY +DC+ +
Sbjct: 203 MGFDCDVVTGSALLDMYAKCKKLDCSI-------------------------------QF 231
Query: 176 FDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARF 235
F MPE+N VSW+ +I+G ++ + L+LF+EM K+G + T ASV +C +
Sbjct: 232 FHSMPEKNWVSWSAIIAGCVQNDDLRGGLELFKEMQKAGVGVSQSTFASVFRSCAGLSAL 291
Query: 236 NEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGH 295
G +HG+ ++T ++++ TA +D+Y KC + AQ++F+S+ + NL +NA+I+G
Sbjct: 292 RLGSQLHGHALKTDFGTDVVIGTATLDMYMKCNNLSDAQKLFNSLPNHNLQSYNAIIVG- 350
Query: 296 CIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVI--CACVRAEL 340
+ + ++G+ L DE++ G CA ++ +L
Sbjct: 351 --YARSDKGLGL----------------DEVSLSGAFRACAVIKGDL 379
Score = 100 bits (250), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 89/395 (22%), Positives = 168/395 (42%), Gaps = 62/395 (15%)
Query: 71 GVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLIN 130
G+ + +M K G + TF S+F SCA + G HG ALK ++ + + ++
Sbjct: 259 GLELFKEMQKAGVGVSQSTFASVFRSCAGLSALRLGSQLHGHALKTDFGTDVVIGTATLD 318
Query: 131 MYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIM 190
MY M C ++S A +LF+ +P N+ S+N +
Sbjct: 319 MY-----MKC--------------------------NNLSDAQKLFNSLPNHNLQSYNAI 347
Query: 191 ISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSL 250
I GY++S G ++ +++ AC EG VHG ++++
Sbjct: 348 IVGYARS--------------DKGLGLDEVSLSGAFRACAVIKGDLEGLQVHGLSMKSLC 393
Query: 251 KPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTA 310
+ NI + A++D+Y KC + A VF+ M R+ V WNA+I H +G E+ + LF
Sbjct: 394 QSNICVANAILDMYGKCGALVEACLVFEEMVSRDAVSWNAIIAAHEQNGNEEKTLSLF-- 451
Query: 311 LVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANL 370
++ + + D I +I + ++ + K ++ + + N + +
Sbjct: 452 -IHNRIIKSRLGLDSFVGIALIDMYSKCGMMEKAEKLHDRLAEQTVVSWN-----AIISG 505
Query: 371 YAGAELTEEAEEILRKMPE---DNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDM 427
++ + +EEA++ KM E D DN ++ +I L C V + +++ +
Sbjct: 506 FSLQKQSEEAQKTFSKMLEMGVDPDNFTYATI-----LDTCANLVTVELGKQIHAQIIKK 560
Query: 428 DPQ-DFSRYQFLLNVYAVAGQWEDVARVRELMKKR 461
+ Q D L+++Y+ G +D + E R
Sbjct: 561 ELQSDAYISSTLVDMYSKCGNMQDFQLIFEKAPNR 595
Score = 66.2 bits (160), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 44/92 (47%)
Query: 220 KTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDS 279
KT + + C G+ H + T KP + + LI +Y KC +E A +VFD
Sbjct: 43 KTFSHIFQECSDRKALCPGKQAHARMILTEFKPTVFVTNCLIQMYIKCSDLEFAFKVFDG 102
Query: 280 MADRNLVCWNAMILGHCIHGKPEEGIKLFTAL 311
M R+ V WNAM+ G+ G KLF A+
Sbjct: 103 MPQRDTVSWNAMLFGYAGRGDIGVAQKLFDAM 134
Score = 44.7 bits (104), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 47/214 (21%), Positives = 100/214 (46%), Gaps = 11/214 (5%)
Query: 6 QIQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSNS 65
QI A +I L ++++ + L+ + G+ L+F+ N NA++ Y+
Sbjct: 552 QIHAQIIKKELQ-SDAYISSTLVDMYSKCGNMQDFQLIFEKAPNRDFVTWNAMVCGYAQH 610
Query: 66 CVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERG-GMCHGLALKNGVDFELPV 124
+ ++ + + M PN TF+++ +C G VE+G H + G+D +L
Sbjct: 611 GLGEEALKIFEYMQLENVKPNHATFLAVLRACGHMGLVEKGLHYFHSMLSNYGLDPQLEH 670
Query: 125 MNSLINMYGCFGAMDCARNMFVQMS-PRDLISWNSIVS-----GHVRSGDMSAAHELFDI 178
+ ++++ G G + A + M D + W +++S G+V + AA+ + +
Sbjct: 671 YSCVVDIMGRSGQVSKALELIEGMPFEADAVIWRTLLSICKIHGNVEVAE-KAAYSILQL 729
Query: 179 MPERNVVSWNIMISGYSKSGNPGCSLKLFREMMK 212
PE + ++ ++ + Y+ +G KL R+MM+
Sbjct: 730 EPE-DSAAYVLLSNIYANAGMWNEVTKL-RKMMR 761
>gi|224115126|ref|XP_002332220.1| predicted protein [Populus trichocarpa]
gi|222831877|gb|EEE70354.1| predicted protein [Populus trichocarpa]
Length = 673
Score = 231 bits (589), Expect = 8e-58, Method: Compositional matrix adjust.
Identities = 126/453 (27%), Positives = 233/453 (51%), Gaps = 32/453 (7%)
Query: 32 ADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFV 91
+ FGS D +V F+ +I A ++ G+ +++M+ PN +T
Sbjct: 127 SKFGSLDSSVKAFRETGEKDVISWTTIISACGDNGRAGMGLRLFIEMLFENVEPNDFTLT 186
Query: 92 SLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPR 151
S+ C+ + G H L+ K G + L + NSL+ +Y G +D A+N+F +M +
Sbjct: 187 SVLSLCSTIQSSDLGMQVHSLSTKLGHESNLRITNSLVYLYLKCGCIDEAKNLFNRMEYK 246
Query: 152 DLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMM 211
+LI+WN++++GH ++ D++ +S +L ++ ++
Sbjct: 247 NLITWNAMIAGHAQAMDLAK--------------------DNFSAQQTGTEALGMYLKLN 286
Query: 212 KSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVE 271
+SG + + T++S+LT C R A +G +H T+++ ++++ TAL+D+Y KC +E
Sbjct: 287 RSGRKPDLFTLSSILTVCSRLAALEQGEQIHAQTIKSGFLSDVVVGTALVDMYDKCGSIE 346
Query: 272 VAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGV 331
A++ F M+ R L+ W +MI HG+ + ++LF + +AG P++ITF+GV
Sbjct: 347 RARKAFLDMSTRTLISWTSMITSFARHGQSQHALQLFEDM---RLAG--FRPNQITFVGV 401
Query: 332 ICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMP-ED 390
+ AC A ++ E +YF M YKIKP HY C+ +++ +EA +++++M E
Sbjct: 402 LAACSHAGMVDEALEYFEIMQKEYKIKPVMDHYGCLVDMFVRLGRLDEAFDVIKRMDVEP 461
Query: 391 NDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWED 450
N+ +W+ L++ CR G + A+ + + P+ Y LLN+Y A +WED
Sbjct: 462 NE------FIWLLLIAGCRNHGNEELGFYAAEQLLKLKPRSTETYVVLLNMYISAERWED 515
Query: 451 VARVRELMKKRRMGRMPGCRLVDLKEVVEKLKV 483
V+ VR LMK+ ++G++ + +K V K
Sbjct: 516 VSMVRRLMKEEKVGKLKDWSRISIKGEVHSFKT 548
Score = 114 bits (285), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 105/468 (22%), Positives = 183/468 (39%), Gaps = 97/468 (20%)
Query: 7 IQAHLITSGL---FFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAYS 63
+ AH+I +G FF SF L+ A G VF + ++ Y
Sbjct: 2 VHAHVIKTGTHEEFFVMSF----LVNVYAKCGVMVNARKVFDNLPRRNVVVWTTLMTGYV 57
Query: 64 NSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELP 123
+ P+ V + M+++G P+++T +C+ + G H +K + +
Sbjct: 58 QNSQPEVAVEVFGDMLESGSFPSNFTLSIALNACSSLESITLGKQFHAFIIKYRISHDSS 117
Query: 124 VMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERN 183
+ N+L ++Y FG++D + F + E++
Sbjct: 118 IGNALCSLYSKFGSLDSSVKAFRETG-------------------------------EKD 146
Query: 184 VVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHG 243
V+SW +IS +G G L+LF EM+ ND T+ SVL+ C + G VH
Sbjct: 147 VISWTTIISACGDNGRAGMGLRLFIEMLFENVEPNDFTLTSVLSLCSTIQSSDLGMQVHS 206
Query: 244 YTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEE 303
+ + + N+ + +L+ LY KC ++ A+ +F+ M +NL+ WNAMI GH +
Sbjct: 207 LSTKLGHESNLRITNSLVYLYLKCGCIDEAKNLFNRMEYKNLITWNAMIAGHA------Q 260
Query: 304 GIKL----FTALVNGTVAGGSI--------SPDEITFIGVICACVRAELLTEGRKYFRQM 351
+ L F+A GT A G PD T ++ C R L +G + Q
Sbjct: 261 AMDLAKDNFSAQQTGTEALGMYLKLNRSGRKPDLFTLSSILTVCSRLAALEQGEQIHAQ- 319
Query: 352 IDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQ 411
IK F ++++ G L V + C
Sbjct: 320 ----TIKSGF-----LSDVVVGTAL-------------------------VDMYDKC--- 342
Query: 412 GAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMK 459
+ER K+F+DM + + ++ +A GQ + ++ E M+
Sbjct: 343 ---GSIERARKAFLDMSTRTLISWTSMITSFARHGQSQHALQLFEDMR 387
>gi|449455172|ref|XP_004145327.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
chloroplastic-like [Cucumis sativus]
gi|449474033|ref|XP_004154055.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
chloroplastic-like [Cucumis sativus]
gi|449510921|ref|XP_004163811.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
chloroplastic-like [Cucumis sativus]
Length = 649
Score = 231 bits (588), Expect = 8e-58, Method: Compositional matrix adjust.
Identities = 136/474 (28%), Positives = 233/474 (49%), Gaps = 47/474 (9%)
Query: 11 LITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSNSCVPDQ 70
L+ G F + F L+ ++ + D VF + NA+ +A + + +
Sbjct: 94 LLVDGGFDQDPFLATKLINMFSELDTVDNARKVFDKTRKRTIYVWNALFRALALAGRGND 153
Query: 71 GVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCV----ERGGMCHGLALKNGVDFELPVMN 126
+ Y +M G + +T+ L +C + C+ ++G H L++G + VM
Sbjct: 154 VLELYPRMNMMGVSSDRFTYTYLLKACVASECLVSFLQKGKEIHAHILRHGYGAHVHVMT 213
Query: 127 SLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVS 186
+L++MY FG + S A +FD MP +NVVS
Sbjct: 214 TLMDMYARFGCV-------------------------------SYASAVFDEMPVKNVVS 242
Query: 187 WNIMISGYSKSGNPGCSLKLFREMMKSGFRG--NDKTMASVLTACGRSARFNEGRSVHGY 244
W+ MI+ Y+K+G P +L+LFREMM + N TM SVL AC A +G+ +H Y
Sbjct: 243 WSAMIACYAKNGKPYEALELFREMMLNTHDSVPNSVTMVSVLQACAAFAALEQGKLIHAY 302
Query: 245 TVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEG 304
+R L + + +ALI +Y++C K+E Q +FD M +++V WN++I + +HG +
Sbjct: 303 ILRRGLDSILPVISALITMYARCGKLESGQLIFDRMHKKDVVLWNSLISSYGLHGYGRKA 362
Query: 305 IKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHY 364
IK+F +++ SP I+FI V+ AC L+ EG+K F M+ + I+P+ HY
Sbjct: 363 IKIFEEMID-----HGFSPSHISFISVLGACSHTGLVEEGKKLFESMVKEHGIQPSVEHY 417
Query: 365 WCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSF 424
CM +L A +EA +I+ + + +W SLL CR V + ER +K
Sbjct: 418 ACMVDLLGRANRLDEAAKIIEDL-----RIEPGPKVWGSLLGACRIHCHVELAERASKRL 472
Query: 425 VDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLKEVV 478
++P + Y L ++YA A W++V RV++L+ R + ++PG ++++ +
Sbjct: 473 FKLEPTNAGNYVLLADIYAEAEMWDEVKRVKKLLDSRELQKVPGRSWIEVRRKI 526
Score = 104 bits (260), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 109/490 (22%), Positives = 204/490 (41%), Gaps = 113/490 (23%)
Query: 6 QIQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSNS 65
+I AH++ G + T L+ A FG Y VF + +A+I Y+ +
Sbjct: 195 EIHAHILRHGYGAHVHVMT-TLMDMYARFGCVSYASAVFDEMPVKNVVSWSAMIACYAKN 253
Query: 66 CVPDQGVVFYLQMIKNGF--MPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELP 123
P + + + +M+ N +PNS T VS+ +CA +E+G + H L+ G+D LP
Sbjct: 254 GKPYEALELFREMMLNTHDSVPNSVTMVSVLQACAAFAALEQGKLIHAYILRRGLDSILP 313
Query: 124 VMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERN 183
V+++LI MY G ++ + +F +M +D++ WNS++S +
Sbjct: 314 VISALITMYARCGKLESGQLIFDRMHKKDVVLWNSLISSY-------------------- 353
Query: 184 VVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHG 243
+ GY + ++K+F EM+ GF + + SVL AC + EG+ +
Sbjct: 354 ------GLHGYGRK-----AIKIFEEMIDHGFSPSHISFISVLGACSHTGLVEEGKKLFE 402
Query: 244 YTVRT-SLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPE 302
V+ ++P++ ++DL + +++ A ++ + + + E
Sbjct: 403 SMVKEHGIQPSVEHYACMVDLLGRANRLDEAAKIIEDL-------------------RIE 443
Query: 303 EGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKP-NF 361
G K++ +L+ + C AE R +K++P N
Sbjct: 444 PGPKVWGSLLGAC--------------RIHCHVELAE---------RASKRLFKLEPTNA 480
Query: 362 AHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLA 421
+Y +A++YA AE+ +E + + +K+ + + W+ V R
Sbjct: 481 GNYVLLADIYAEAEMWDEVKRV-KKLLDSRELQKVPGRSWIE-------------VRRKI 526
Query: 422 KSFVDMD---PQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLV--DL-K 475
SF +D PQ + L+N + MK+R G P +LV DL +
Sbjct: 527 YSFTSVDEFNPQGEQLHALLVN-------------LSNEMKQR--GYTPQTKLVLYDLDQ 571
Query: 476 EVVEKLKVGH 485
E E++ +GH
Sbjct: 572 EEKERIVLGH 581
Score = 52.0 bits (123), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 48/208 (23%), Positives = 89/208 (42%), Gaps = 14/208 (6%)
Query: 188 NIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVR 247
N +I K GN LK ++ +T ++ + R ++ VH V
Sbjct: 42 NHLIQSLCKQGN----LKQALYLLSHESNPTQQTCELLILSAARRNSLSDALDVHQLLVD 97
Query: 248 TSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKL 307
+ L T LI+++S+ V+ A++VFD R + WNA+ + G+ + ++L
Sbjct: 98 GGFDQDPFLATKLINMFSELDTVDNARKVFDKTRKRTIYVWNALFRALALAGRGNDVLEL 157
Query: 308 FTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNF-AHYWC 366
+ + + G +S D T+ ++ ACV +E L + ++ I + ++ + AH
Sbjct: 158 YPRM---NMMG--VSSDRFTYTYLLKACVASECLVSFLQKGKE-IHAHILRHGYGAHVHV 211
Query: 367 MANL---YAGAELTEEAEEILRKMPEDN 391
M L YA A + +MP N
Sbjct: 212 MTTLMDMYARFGCVSYASAVFDEMPVKN 239
>gi|334187761|ref|NP_197403.2| mitochondrial editing factor 18 [Arabidopsis thaliana]
gi|223635651|sp|P0C8Q8.1|PP394_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At5g19020, mitochondrial; Flags: Precursor
gi|332005257|gb|AED92640.1| mitochondrial editing factor 18 [Arabidopsis thaliana]
Length = 685
Score = 231 bits (588), Expect = 8e-58, Method: Compositional matrix adjust.
Identities = 135/397 (34%), Positives = 209/397 (52%), Gaps = 14/397 (3%)
Query: 69 DQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSL 128
D+ +V+Y +M++ G P+ V L + A++ +G HG +K G D + ++
Sbjct: 287 DEALVYYTEMLRCGMKPSEVMMVDLLSASARSVGSSKGLQLHGTIVKRGFDCYDFLQATI 346
Query: 129 INMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWN 188
I+ Y + A F + S N++++G V++G + A E+FD ++++ SWN
Sbjct: 347 IHFYAVSNDIKLALQQFEASVKDHIASRNALIAGFVKNGMVEQAREVFDQTHDKDIFSWN 406
Query: 189 IMISGYSKSGNPGCSLKLFREMMKSG-FRGNDKTMASVLTACGRSARFNEGRSVHGYTVR 247
MISGY++S +P +L LFREM+ S + + TM SV +A EG+ H Y
Sbjct: 407 AMISGYAQSLSPQLALHLFREMISSSQVKPDAITMVSVFSAISSLGSLEEGKRAHDYLNF 466
Query: 248 TSLKPNIILDTALIDLYSKCQKVEVAQRVF---DSMADRNLVCWNAMILGHCIHGKPEEG 304
+++ PN L A+ID+Y+KC +E A +F +++ + WNA+I G HG +
Sbjct: 467 STIPPNDNLTAAIIDMYAKCGSIETALNIFHQTKNISSSTISPWNAIICGSATHGHAKLA 526
Query: 305 IKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHY 364
+ L++ L I P+ ITF+GV+ AC A L+ G+ YF M + I+P+ HY
Sbjct: 527 LDLYSDL-----QSLPIKPNSITFVGVLSACCHAGLVELGKTYFESMKSDHGIEPDIKHY 581
Query: 365 WCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSF 424
CM +L A EEA+E+++KMP D M +W LLS R G V + E A
Sbjct: 582 GCMVDLLGKAGRLEEAKEMIKKMPVKADVM-----IWGMLLSASRTHGNVEIAELAATEL 636
Query: 425 VDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKR 461
+DP L NVYA AG+WEDVA VRE M+ R
Sbjct: 637 AAIDPSHGGCKVMLSNVYADAGRWEDVALVREEMRTR 673
Score = 141 bits (356), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 97/370 (26%), Positives = 172/370 (46%), Gaps = 38/370 (10%)
Query: 50 PGTFCVN--AVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGG 107
P CV+ +IK Y+ + + + + +M G M N T ++ +C+ G +
Sbjct: 134 PERSCVSYTTLIKGYAQNNQWSEAMELFREMRNLGIMLNEVTLATVISACSHLGGIWDCR 193
Query: 108 MCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSG 167
M LA+K ++ + V +L++MY + AR +F +M R+L++WN +++G+ ++G
Sbjct: 194 MLQSLAIKLKLEGRVFVSTNLLHMYCLCLCLKDARKLFDEMPERNLVTWNVMLNGYSKAG 253
Query: 168 DMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLT 227
+ A ELFD + E+++VSW MI G + +L + EM++ G + ++ M +L+
Sbjct: 254 LIEQAEELFDQITEKDIVSWGTMIDGCLRKNQLDEALVYYTEMLRCGMKPSEVMMVDLLS 313
Query: 228 ACGRSARFNEGRSVHGYTVR-------------------------------TSLKPNIIL 256
A RS ++G +HG V+ S+K +I
Sbjct: 314 ASARSVGSSKGLQLHGTIVKRGFDCYDFLQATIIHFYAVSNDIKLALQQFEASVKDHIAS 373
Query: 257 DTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTV 316
ALI + K VE A+ VFD D+++ WNAMI G+ P+ + LF +++ +
Sbjct: 374 RNALIAGFVKNGMVEQAREVFDQTHDKDIFSWNAMISGYAQSLSPQLALHLFREMISSS- 432
Query: 317 AGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAEL 376
+ PD IT + V A L EG++ ++F I PN + ++YA
Sbjct: 433 ---QVKPDAITMVSVFSAISSLGSLEEGKRA-HDYLNFSTIPPNDNLTAAIIDMYAKCGS 488
Query: 377 TEEAEEILRK 386
E A I +
Sbjct: 489 IETALNIFHQ 498
Score = 141 bits (356), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 83/264 (31%), Positives = 141/264 (53%), Gaps = 9/264 (3%)
Query: 89 TFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQM 148
VS GSCA + V G H LK+G+D + NS++NMY + A ++F
Sbjct: 43 ALVSALGSCASSNDVTCGRQIHCRVLKSGLDSNGYICNSVLNMYAKCRLLADAESVFRDH 102
Query: 149 SPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFR 208
+ D S+N +V G+VRS + A +LFD+MPER+ VS+ +I GY+++ +++LFR
Sbjct: 103 AKLDSASFNIMVDGYVRSRRLWDALKLFDVMPERSCVSYTTLIKGYAQNNQWSEAMELFR 162
Query: 209 EMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQ 268
EM G N+ T+A+V++AC + R + ++ L+ + + T L+ +Y C
Sbjct: 163 EMRNLGIMLNEVTLATVISACSHLGGIWDCRMLQSLAIKLKLEGRVFVSTNLLHMYCLCL 222
Query: 269 KVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITF 328
++ A+++FD M +RNLV WN M+ G+ G E+ +LF + D +++
Sbjct: 223 CLKDARKLFDEMPERNLVTWNVMLNGYSKAGLIEQAEELFDQITE---------KDIVSW 273
Query: 329 IGVICACVRAELLTEGRKYFRQMI 352
+I C+R L E Y+ +M+
Sbjct: 274 GTMIDGCLRKNQLDEALVYYTEML 297
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 61/272 (22%), Positives = 113/272 (41%), Gaps = 49/272 (18%)
Query: 43 VFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNG-FMPNSYTFVSLFGSCAKTG 101
VF ++ F NA+I Y+ S P + + +MI + P++ T VS+F + + G
Sbjct: 393 VFDQTHDKDIFSWNAMISGYAQSLSPQLALHLFREMISSSQVKPDAITMVSVFSAISSLG 452
Query: 102 CVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQ---MSPRDLISWNS 158
+E G H + + + ++I+MY G+++ A N+F Q +S + WN+
Sbjct: 453 SLEEGKRAHDYLNFSTIPPNDNLTAAIIDMYAKCGSIETALNIFHQTKNISSSTISPWNA 512
Query: 159 IVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGN 218
I+ G SA H G+ +L L+ ++ + N
Sbjct: 513 IICG-------SATH------------------------GHAKLALDLYSDLQSLPIKPN 541
Query: 219 DKTMASVLTACGRS-------ARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVE 271
T VL+AC + F +S HG ++P+I ++DL K ++E
Sbjct: 542 SITFVGVLSACCHAGLVELGKTYFESMKSDHG------IEPDIKHYGCMVDLLGKAGRLE 595
Query: 272 VAQRVFDSMADR-NLVCWNAMILGHCIHGKPE 302
A+ + M + +++ W ++ HG E
Sbjct: 596 EAKEMIKKMPVKADVMIWGMLLSASRTHGNVE 627
Score = 48.1 bits (113), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 49/231 (21%), Positives = 90/231 (38%), Gaps = 58/231 (25%)
Query: 218 NDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVF 277
++ + S L +C S GR +H +++ L N + +++++Y+KC+ + A+ VF
Sbjct: 40 TERALVSALGSCASSNDVTCGRQIHCRVLKSGLDSNGYICNSVLNMYAKCRLLADAESVF 99
Query: 278 DSMADRNLVCWNAMILGHCIHGKPEEGIKLF-----------TALVNGTVAGGSISP--- 323
A + +N M+ G+ + + +KLF T L+ G S
Sbjct: 100 RDHAKLDSASFNIMVDGYVRSRRLWDALKLFDVMPERSCVSYTTLIKGYAQNNQWSEAME 159
Query: 324 ------------DEITFIGVICAC--------------VRAELLTEGRKYF--------- 348
+E+T VI AC + +L EGR +
Sbjct: 160 LFREMRNLGIMLNEVTLATVISACSHLGGIWDCRMLQSLAIKLKLEGRVFVSTNLLHMYC 219
Query: 349 --------RQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDN 391
R++ D + N + M N Y+ A L E+AEE+ ++ E +
Sbjct: 220 LCLCLKDARKLFDEMP-ERNLVTWNVMLNGYSKAGLIEQAEELFDQITEKD 269
>gi|108864632|gb|ABG22571.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
Length = 692
Score = 231 bits (588), Expect = 8e-58, Method: Compositional matrix adjust.
Identities = 136/421 (32%), Positives = 224/421 (53%), Gaps = 18/421 (4%)
Query: 53 FCVNAVIKAYSNSCVPDQGVVFYLQMIK-NGFMPNSYTFVSLFGSCAKTGCVERGGMCHG 111
+ ++++ A S+S P+ + M+ + P+ + S+ A+ G H
Sbjct: 152 YIYSSLLTAVSHSASPELALPILRCMLSADALHPDHFVISSVASVFARLRSRRLGRQLHA 211
Query: 112 ---LALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGD 168
++ NG D V +SL++MY G+ D R +F MS ++ + W ++VSG+ +G
Sbjct: 212 HFVVSPYNGDDV---VKSSLVDMYCKCGSPDDGRKVFDSMSAKNSVVWTALVSGYASNGR 268
Query: 169 MSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDK-TMASVLT 227
A +LF MP RN+ +W +ISG +G +++LF EM + G R +D ++ V+
Sbjct: 269 SEEALQLFRSMPGRNLFAWTALISGLVNTGESVGAVELFVEMRRDGVRIDDAFVLSIVIG 328
Query: 228 ACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVC 287
A F GR +HG T+R N+I+ ALID+YSKC + A+ VF+ + R+++
Sbjct: 329 GSADLAAFVLGRQLHGSTMRLGFLSNMIVGNALIDMYSKCSDILSAREVFEGITFRDVIS 388
Query: 288 WNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKY 347
W M++G HG+ EE + L+ +V +AG P+E+TF+G+I AC A L+ +GR+
Sbjct: 389 WTTMVVGEAQHGRAEEALALYDRMV---LAGA--KPNEVTFVGLIYACSHAGLVQKGRQL 443
Query: 348 FRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSL 407
F M + Y I P HY C +L + + EAEE++ MP + D + W +LLS
Sbjct: 444 FESMKNEYGITPRLQHYTCYLDLLSRSGHLLEAEELMTTMPYEPDEAT-----WGALLSA 498
Query: 408 CRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMP 467
C M R++ +++ P+D S Y L NVYAV G+W+ VA+VR+ M + + P
Sbjct: 499 CTKYKDAEMCIRISDKLLELRPKDSSTYILLSNVYAVNGKWDSVAKVRKCMIGLEIRKEP 558
Query: 468 G 468
G
Sbjct: 559 G 559
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 49/174 (28%), Positives = 93/174 (53%), Gaps = 12/174 (6%)
Query: 158 SIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRG 217
++VS + +S + A LFD P R++ ++ +++ S S +P +L + R M+ +
Sbjct: 125 ALVSAYAKSRLLPDALHLFDETPRRDIYIYSSLLTAVSHSASPELALPILRCMLSADALH 184
Query: 218 NDK-TMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRV 276
D ++SV + R GR +H + V + + ++ ++L+D+Y KC + ++V
Sbjct: 185 PDHFVISSVASVFARLRSRRLGRQLHAHFVVSPYNGDDVVKSSLVDMYCKCGSPDDGRKV 244
Query: 277 FDSMADRNLVCWNAMILGHCIHGKPEEGIKLF-----------TALVNGTVAGG 319
FDSM+ +N V W A++ G+ +G+ EE ++LF TAL++G V G
Sbjct: 245 FDSMSAKNSVVWTALVSGYASNGRSEEALQLFRSMPGRNLFAWTALISGLVNTG 298
>gi|225436612|ref|XP_002275537.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g27110-like [Vitis vinifera]
Length = 694
Score = 231 bits (588), Expect = 9e-58, Method: Compositional matrix adjust.
Identities = 135/469 (28%), Positives = 235/469 (50%), Gaps = 41/469 (8%)
Query: 6 QIQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSNS 65
+I L+ SG F + F + L+ G + VF+ I N++I YS
Sbjct: 228 EIHMELVRSG-FALDGFVSSALVDMYGKCGCLEMAKEVFEQIQRKNVVSWNSMIAGYSLK 286
Query: 66 CVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVM 125
+ + +M + G P T S+ +C+++ ++ G HG ++N V+ ++ V
Sbjct: 287 GDSKSCIELFRRMDEEGIRPTLTTLSSILMACSRSVNLQLGKFIHGYIIRNRVEADIFVN 346
Query: 126 NSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVV 185
+SLI++Y + G++ +A +F MP+ NVV
Sbjct: 347 SSLIDLY-------------------------------FKCGNIGSAENVFQNMPKTNVV 375
Query: 186 SWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYT 245
SWN+MISGY K G+ +L +F +M K+G + + T SVL AC + A +G+ +H +
Sbjct: 376 SWNVMISGYVKVGSYLEALVIFTDMRKAGVKPDAITFTSVLPACSQLAVLEKGKEIHNFI 435
Query: 246 VRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGI 305
+ + L+ N ++ AL+D+Y+KC V+ A +F+ + +R+ V W +MI + HG+ E +
Sbjct: 436 IESKLEINEVVMGALLDMYAKCGAVDEALHIFNQLPERDFVSWTSMIAAYGSHGQAFEAL 495
Query: 306 KLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYW 365
KLF + PD++TF+ ++ AC A L+ EG YF QMI Y KP HY
Sbjct: 496 KLFEKMQQSDA-----KPDKVTFLAILSACSHAGLVDEGCYYFNQMIAEYGFKPAVEHYS 550
Query: 366 CMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFV 425
C+ +L EA EIL++ P+ +++ S +L S C + + E++ + +
Sbjct: 551 CLIDLLGRVGRLREAYEILQRTPDIREDVGLLS----TLFSACHLHKKLDLGEQIGRLLI 606
Query: 426 DMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDL 474
+ DP D S Y L N+YA +W++V +VR +K+ + + PGC +++
Sbjct: 607 EKDPDDPSTYIILSNMYASVKKWDEVRKVRLKIKELGLKKNPGCSWIEV 655
Score = 174 bits (442), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 110/381 (28%), Positives = 187/381 (49%), Gaps = 47/381 (12%)
Query: 56 NAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALK 115
N VI Y P++ + + +M +GF P+S T ++ SCA+ +ERG H ++
Sbjct: 176 NNVISCYYQDGQPEKALELFEEMKVSGFKPDSVTLTTVISSCARLLDLERGKEIHMELVR 235
Query: 116 NGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHEL 175
+G + V ++L++MYG G ++ A+ +F Q+
Sbjct: 236 SGFALDGFVSSALVDMYGKCGCLEMAKEVFEQIQ-------------------------- 269
Query: 176 FDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARF 235
+NVVSWN MI+GYS G+ ++LFR M + G R T++S+L AC RS
Sbjct: 270 -----RKNVVSWNSMIAGYSLKGDSKSCIELFRRMDEEGIRPTLTTLSSILMACSRSVNL 324
Query: 236 NEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGH 295
G+ +HGY +R ++ +I ++++LIDLY KC + A+ VF +M N+V WN MI G+
Sbjct: 325 QLGKFIHGYIIRNRVEADIFVNSSLIDLYFKCGNIGSAENVFQNMPKTNVVSWNVMISGY 384
Query: 296 CIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFY 355
G E + +FT + V PD ITF V+ AC + +L +G++ +I+
Sbjct: 385 VKVGSYLEALVIFTDMRKAGV-----KPDAITFTSVLPACSQLAVLEKGKEIHNFIIE-S 438
Query: 356 KIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQG--- 412
K++ N + ++YA +EA I ++PE + + W S+++ G
Sbjct: 439 KLEINEVVMGALLDMYAKCGAVDEALHIFNQLPERD------FVSWTSMIAAYGSHGQAF 492
Query: 413 -AVAMVERLAKSFVDMDPQDF 432
A+ + E++ +S D F
Sbjct: 493 EALKLFEKMQQSDAKPDKVTF 513
Score = 149 bits (375), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 99/352 (28%), Positives = 175/352 (49%), Gaps = 39/352 (11%)
Query: 42 LVFKCINNPGTFCV-NAVIKAYSNSCVPDQGVVFYLQMIKNGFM-PNSYTFVSLFGSCAK 99
LVF+ I NP + N ++ A + + + +G+ + +++ ++ P+++T+ S+ +C+
Sbjct: 59 LVFQTIENPLDITLWNGLMAACTKNFIFIEGLEVFHRLLHFPYLKPDAFTYPSVLKACSG 118
Query: 100 TGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSI 159
G V G M H +K+G ++ VM+S + MY C N+F
Sbjct: 119 LGRVGYGKMVHTHVIKSGFAMDVVVMSSAVGMYA-----KC--NVF-------------- 157
Query: 160 VSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGND 219
A +LFD MPER+V SWN +IS Y + G P +L+LF EM SGF+ +
Sbjct: 158 ----------EDAIKLFDEMPERDVASWNNVISCYYQDGQPEKALELFEEMKVSGFKPDS 207
Query: 220 KTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDS 279
T+ +V+++C R G+ +H VR+ + + +AL+D+Y KC +E+A+ VF+
Sbjct: 208 VTLTTVISSCARLLDLERGKEIHMELVRSGFALDGFVSSALVDMYGKCGCLEMAKEVFEQ 267
Query: 280 MADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAE 339
+ +N+V WN+MI G+ + G + I+LF + I P T ++ AC R+
Sbjct: 268 IQRKNVVSWNSMIAGYSLKGDSKSCIELFRRMDE-----EGIRPTLTTLSSILMACSRSV 322
Query: 340 LLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDN 391
L G K+ I +++ + + +LY AE + + MP+ N
Sbjct: 323 NLQLG-KFIHGYIIRNRVEADIFVNSSLIDLYFKCGNIGSAENVFQNMPKTN 373
>gi|297818204|ref|XP_002876985.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297322823|gb|EFH53244.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 451
Score = 231 bits (588), Expect = 9e-58, Method: Compositional matrix adjust.
Identities = 131/394 (33%), Positives = 206/394 (52%), Gaps = 7/394 (1%)
Query: 3 QLLQIQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAY 62
QL QI +I L N+ L+ S+ FG Y LVF + +P TF N +I++
Sbjct: 35 QLKQIHTKIIKHNLT-NDQLLVRQLISVSSSFGETQYASLVFNQLQSPSTFTWNLMIRSL 93
Query: 63 SNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFEL 122
S + P + ++ ++ M+ + + +TF + +C + + G HGLA+K G ++
Sbjct: 94 SLNHKPREALLLFILMLSHQPQFDKFTFPFVIKACLASSSLRLGTQVHGLAIKAGFFNDV 153
Query: 123 PVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPER 182
N+L+++Y G DC R +F +M R ++SW +++ G V + + +A +F+ MP R
Sbjct: 154 FFQNTLMDLYFKCGKPDCGRKVFDKMPGRSIVSWTTMLYGLVSNSQLDSAEIVFNQMPTR 213
Query: 183 NVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVH 242
NVVSW MI+ Y K+ P + +LFR M + N+ T+ ++L A + + GR VH
Sbjct: 214 NVVSWTAMITAYVKNRRPDEAFQLFRRMQVDDVKPNEFTIVNLLQASTQLGSLSMGRWVH 273
Query: 243 GYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPE 302
Y + + L TALID+YSKC ++ A++VFD M ++L WN+MI +HG E
Sbjct: 274 DYAHKNGFVLDCYLGTALIDMYSKCGSLQDARKVFDVMQSKSLATWNSMITSLGVHGCGE 333
Query: 303 EGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFA 362
E + LF S+ PD ITF+GV+ AC + +G +YF +MI Y I P
Sbjct: 334 EALYLFEE----MEEEASVEPDAITFVGVLSACANTGNVKDGLRYFTRMIQVYGISPIRE 389
Query: 363 HYWCMANLYAGAELTEEAEEILRKMPEDNDNMSF 396
H CM L A E+A + + P N N SF
Sbjct: 390 HNACMIQLLEQALEMEKASDSMDSDP--NFNSSF 421
Score = 45.1 bits (105), Expect = 0.100, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 55/116 (47%), Gaps = 9/116 (7%)
Query: 233 ARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMI 292
+ F++ + +H ++ +L + +L LI + S + + A VF+ + + WN MI
Sbjct: 31 SNFSQLKQIHTKIIKHNLTNDQLLVRQLISVSSSFGETQYASLVFNQLQSPSTFTWNLMI 90
Query: 293 LGHCIHGKPEEGIKLFTALVNGTVAGGSISP--DEITFIGVICACVRAELLTEGRK 346
++ KP E + LF ++ S P D+ TF VI AC+ + L G +
Sbjct: 91 RSLSLNHKPREALLLFILML-------SHQPQFDKFTFPFVIKACLASSSLRLGTQ 139
>gi|357150199|ref|XP_003575376.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g33350-like [Brachypodium distachyon]
Length = 523
Score = 231 bits (588), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 135/452 (29%), Positives = 236/452 (52%), Gaps = 17/452 (3%)
Query: 39 YTVLVFKCINNPGTFCVNAVIKAYSNSCVP----DQGVVFYLQMIKNGF-MPNSYTFVSL 93
Y +F +P F +A++ AY+ + + +L+M++ G PN + + +
Sbjct: 60 YARRLFDSTPHPNVFLYSAMLSAYAAASPAQAYGHDALALFLRMLRRGRPAPNQFVYPLV 119
Query: 94 FGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDL 153
+ G V+ H A K+G + SL++ Y +G M AR +F ++ R++
Sbjct: 120 LRAACAIG-VQLVRSIHSHACKSGFHAYDVIRTSLLDGYSRYGMMLDARKLFDGLTERNV 178
Query: 154 ISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKS 213
ISW ++VSG+ R+G + A LFD MPER+V +WN MI+G +++G ++ + M+
Sbjct: 179 ISWTALVSGYARAGKIGDAIVLFDRMPERDVAAWNAMITGCTQNGLFVEAVGICSRMVDE 238
Query: 214 GFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVA 273
GF+ N T++ VL+ACG G+ VHGY R+ + + LID+Y KC ++ A
Sbjct: 239 GFQLNGTTVSCVLSACGHLGMLKIGKVVHGYAWRSCVGFGSSVVNGLIDMYGKCGNLKEA 298
Query: 274 QRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVIC 333
+ +FD +DR+L WN++I +HG + I +F + + I PD +TF+G++
Sbjct: 299 RWMFDEFSDRSLTTWNSLINCLALHGHSKSAIAVFDEMRD-----EGIEPDVVTFVGLLN 353
Query: 334 ACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDN 393
AC + EG YF+ M D +I+P HY C+ +L A E+A ++ M D
Sbjct: 354 ACTHGGFVDEGLTYFKLMCDELRIEPEIEHYGCIVDLLGRAGRFEDAMNVINDMKVQPDE 413
Query: 394 MSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVAR 453
++W SLL+ CR + + E + + ++P + + L N+Y+ G WE+V +
Sbjct: 414 -----VIWGSLLNACRTHRQLELAEFSVRKLLQLNPNNANYVVMLANLYSEGGSWEEVTK 468
Query: 454 VRELMKKRRMG-RMPGCRLVDLKEVVEKLKVG 484
+R+LMK+ MG ++PGC +++ + G
Sbjct: 469 IRKLMKEDIMGKKLPGCSWIEVDRKTHRFYSG 500
Score = 82.8 bits (203), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 88/402 (21%), Positives = 151/402 (37%), Gaps = 75/402 (18%)
Query: 5 LQIQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSN 64
+ + A + GL N L+ A G +++F + NA+I +
Sbjct: 162 MMLDARKLFDGLTERNVISWTALVSGYARAGKIGDAIVLFDRMPERDVAAWNAMITGCTQ 221
Query: 65 SCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPV 124
+ + + V +M+ GF N T + +C G ++ G + HG A ++ V F V
Sbjct: 222 NGLFVEAVGICSRMVDEGFQLNGTTVSCVLSACGHLGMLKIGKVVHGYAWRSCVGFGSSV 281
Query: 125 MNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNV 184
+N LI+MYG G + AR MF + S R L +WNS+++
Sbjct: 282 VNGLIDMYGKCGNLKEARWMFDEFSDRSLTTWNSLIN----------------------- 318
Query: 185 VSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGY 244
+ + G+SKS ++ +F EM G + T +L AC +EG +
Sbjct: 319 ---CLALHGHSKS-----AIAVFDEMRDEGIEPDVVTFVGLLNACTHGGFVDEGLTYFKL 370
Query: 245 TV-RTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEE 303
++P I ++DL + + E A V + M
Sbjct: 371 MCDELRIEPEIEHYGCIVDLLGRAGRFEDAMNVINDM----------------------- 407
Query: 304 GIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAH 363
+ PDE+ + ++ AC L R+++ ++ PN A+
Sbjct: 408 ----------------KVQPDEVIWGSLLNACRTHRQLELAEFSVRKLL---QLNPNNAN 448
Query: 364 YWCM-ANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSL 404
Y M ANLY+ EE +I + M ED W+ +
Sbjct: 449 YVVMLANLYSEGGSWEEVTKIRKLMKEDIMGKKLPGCSWIEV 490
>gi|186512044|ref|NP_001119013.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|223635616|sp|P0C8Q2.1|PP323_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At4g19191, mitochondrial; Flags: Precursor
gi|332658758|gb|AEE84158.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 654
Score = 231 bits (588), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 139/464 (29%), Positives = 229/464 (49%), Gaps = 46/464 (9%)
Query: 35 GSPDYTVLVFKCINNPGTFCV--NAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVS 92
G D LVF+ I+ V N++ KAYS Y M++ F P+ TF++
Sbjct: 202 GDLDSAKLVFEAIDRGDRTVVSWNSMFKAYSVFGEAFDAFGLYCLMLREEFKPDLSTFIN 261
Query: 93 LFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRD 152
L SC + +G + H A+ G D ++ +N+ I+MY
Sbjct: 262 LAASCQNPETLTQGRLIHSHAIHLGTDQDIEAINTFISMYS------------------- 302
Query: 153 LISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMK 212
+S D +A LFDIM R VSW +MISGY++ G+ +L LF M+K
Sbjct: 303 ------------KSEDTCSARLLFDIMTSRTCVSWTVMISGYAEKGDMDEALALFHAMIK 350
Query: 213 SGFRGNDKTMASVLTACGRSARFNEGRSVHGYT-VRTSLKPNIILDTALIDLYSKCQKVE 271
SG + + T+ S+++ CG+ G+ + + + N+++ ALID+YSKC +
Sbjct: 351 SGEKPDLVTLLSLISGCGKFGSLETGKWIDARADIYGCKRDNVMICNALIDMYSKCGSIH 410
Query: 272 VAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGV 331
A+ +FD+ ++ +V W MI G+ ++G E +KLF+ +++ P+ ITF+ V
Sbjct: 411 EARDIFDNTPEKTVVTWTTMIAGYALNGIFLEALKLFSKMID-----LDYKPNHITFLAV 465
Query: 332 ICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDN 391
+ AC + L +G +YF M Y I P HY CM +L EEA E++R M
Sbjct: 466 LQACAHSGSLEKGWEYFHIMKQVYNISPGLDHYSCMVDLLGRKGKLEEALELIRNMSAKP 525
Query: 392 DNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDV 451
D + +W +LL+ C+ V + E+ A+S +++PQ + Y + N+YA AG W+
Sbjct: 526 D-----AGIWGALLNACKIHRNVKIAEQAAESLFNLEPQMAAPYVEMANIYAAAGMWDGF 580
Query: 452 ARVRELMKKRRMGRMPGCRLVDLKEVVEKLKVGHFWRGGMKEEV 495
AR+R +MK+R + + PG ++ + VG G ++ EV
Sbjct: 581 ARIRSIMKQRNIKKYPGESVIQVNGKNHSFTVGE--HGHVENEV 622
Score = 121 bits (304), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 98/423 (23%), Positives = 169/423 (39%), Gaps = 43/423 (10%)
Query: 7 IQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSNSC 66
+ AHLI S F+++ F + S DY VF+ + NA++ + S
Sbjct: 74 VHAHLIKSP-FWSDVFVGTATVDMFVKCNSVDYAAKVFERMPERDATTWNAMLSGFCQSG 132
Query: 67 VPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMN 126
D+ + +M N P+S T ++L S + ++ H + ++ GVD ++ V N
Sbjct: 133 HTDKAFSLFREMRLNEITPDSVTVMTLIQSASFEKSLKLLEAMHAVGIRLGVDVQVTVAN 192
Query: 127 SLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVS 186
+ I+ YG G +D A+ +F + D R VVS
Sbjct: 193 TWISTYGKCGDLDSAKLVFEAIDRGD-----------------------------RTVVS 223
Query: 187 WNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTV 246
WN M YS G + L+ M++ F+ + T ++ +C +GR +H + +
Sbjct: 224 WNSMFKAYSVFGEAFDAFGLYCLMLREEFKPDLSTFINLAASCQNPETLTQGRLIHSHAI 283
Query: 247 RTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIK 306
+I I +YSK + A+ +FD M R V W MI G+ G +E +
Sbjct: 284 HLGTDQDIEAINTFISMYSKSEDTCSARLLFDIMTSRTCVSWTVMISGYAEKGDMDEALA 343
Query: 307 LFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIK-PNFAHYW 365
LF A++ PD +T + +I C + L G K+ D Y K N
Sbjct: 344 LFHAMIK-----SGEKPDLVTLLSLISGCGKFGSLETG-KWIDARADIYGCKRDNVMICN 397
Query: 366 CMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFV 425
+ ++Y+ EA +I PE + W ++++ G +L +
Sbjct: 398 ALIDMYSKCGSIHEARDIFDNTPEKT------VVTWTTMIAGYALNGIFLEALKLFSKMI 451
Query: 426 DMD 428
D+D
Sbjct: 452 DLD 454
Score = 96.7 bits (239), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 71/295 (24%), Positives = 128/295 (43%), Gaps = 44/295 (14%)
Query: 56 NAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAK---TGCVERGGMCHGL 112
N I+ N P + ++ + +M + GF PN++TF + +CA+ GC E M H
Sbjct: 21 NLQIREAVNRNDPVESLLLFREMKRGGFEPNNFTFPFVAKACARLADVGCCE---MVHAH 77
Query: 113 ALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAA 172
+K+ ++ V + ++M+ ++D A +F +M RD +WN+++SG +SG A
Sbjct: 78 LIKSPFWSDVFVGTATVDMFVKCNSVDYAAKVFERMPERDATTWNAMLSGFCQSGHTDKA 137
Query: 173 HELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRS 232
LF M + ++ + +S + SLKL M
Sbjct: 138 FSLFREMRLNEITPDSVTVMTLIQSASFEKSLKLLEAM---------------------- 175
Query: 233 ARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSM--ADRNLVCWNA 290
H +R + + + I Y KC ++ A+ VF+++ DR +V WN+
Sbjct: 176 ---------HAVGIRLGVDVQVTVANTWISTYGKCGDLDSAKLVFEAIDRGDRTVVSWNS 226
Query: 291 MILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGR 345
M + + G+ + L+ ++ PD TFI + +C E LT+GR
Sbjct: 227 MFKAYSVFGEAFDAFGLYCLMLR-----EEFKPDLSTFINLAASCQNPETLTQGR 276
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 53/165 (32%), Positives = 83/165 (50%), Gaps = 6/165 (3%)
Query: 169 MSAAHE-LFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLT 227
MS H L+ I +V +WN+ I +P SL LFREM + GF N+ T V
Sbjct: 1 MSLIHRRLYRISGLSSVNAWNLQIREAVNRNDPVESLLLFREMKRGGFEPNNFTFPFVAK 60
Query: 228 ACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVC 287
AC R A VH + +++ ++ + TA +D++ KC V+ A +VF+ M +R+
Sbjct: 61 ACARLADVGCCEMVHAHLIKSPFWSDVFVGTATVDMFVKCNSVDYAAKVFERMPERDATT 120
Query: 288 WNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVI 332
WNAM+ G C G ++ LF + I+PD +T + +I
Sbjct: 121 WNAMLSGFCQSGHTDKAFSLFREM-----RLNEITPDSVTVMTLI 160
>gi|414884999|tpg|DAA61013.1| TPA: hypothetical protein ZEAMMB73_343744 [Zea mays]
Length = 557
Score = 230 bits (587), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 142/467 (30%), Positives = 245/467 (52%), Gaps = 32/467 (6%)
Query: 12 ITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSNSCVPDQG 71
+ S L NS ++ L GS + I P T N +++++ +
Sbjct: 117 LPSDLRLANSLLSLYL-----SHGSTASARRLLADIPRPDTVTWNTLLRSFLRMGLLPAA 171
Query: 72 VVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGV-DFELPVMNSLIN 130
+ +M + + T+ S+ +G G + + L +G+ + ++ NS++
Sbjct: 172 RRLFDEMPERDLV----TYNSML-----SGYAAEGDIANARELFDGMPERDVVTWNSMLA 222
Query: 131 MYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIM 190
Y G M+ A+ +F M RD++SWNS++ G+ ++GD+ +FD MP R+ VSWN++
Sbjct: 223 GYAQRGDMESAKRLFDVMPVRDVVSWNSMLDGYAQTGDIEMTRMVFDGMPRRSTVSWNVV 282
Query: 191 ISGYSKSGNPGCSLKLFREMMK-SGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTS 249
++ Y+K + L LF MM G + N+KT SVLTACG GR VH + V S
Sbjct: 283 LALYAKVKDWHECLNLFDAMMAVGGSKPNEKTFVSVLTACGHLGDLERGRWVH-HLVHES 341
Query: 250 ---LKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIK 306
L P+++L TA++ +Y+KC + A+ +FD M +R++ WN+MI+G+ +HG E+ ++
Sbjct: 342 WERLLPDVLLLTAMMTMYAKCGVMGTAKEIFDLMTERSVASWNSMIIGYGLHGYSEKALE 401
Query: 307 LFTAL-VNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYW 365
LF + NG P+E TFI ++ +C L+ EG F +M+ FY I+P H+
Sbjct: 402 LFMEMEKNGP------QPNETTFICILSSCAHGGLVLEGWWCFDRMVRFYNIEPKAEHFG 455
Query: 366 CMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFV 425
CM +L A L ++E ++ +N +W +L+S R Q + + E + +
Sbjct: 456 CMMDLLGRAGLLRDSENLI-----NNLQAKVSPALWGALISASRTQDSSKLGEFIGTKLI 510
Query: 426 DMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLV 472
+M P +FS Y L N+YA G+W+DV +VR++MK++ + + G LV
Sbjct: 511 EMKPTEFSSYVLLSNIYATEGRWDDVEKVRKVMKEKVVEKDVGMSLV 557
Score = 107 bits (267), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 80/284 (28%), Positives = 138/284 (48%), Gaps = 18/284 (6%)
Query: 110 HGLALKNG-VDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGD 168
H L L G + +L + NSL+++Y G+ AR + + D ++WN+++ +R G
Sbjct: 108 HALGLSYGHLPSDLRLANSLLSLYLSHGSTASARRLLADIPRPDTVTWNTLLRSFLRMGL 167
Query: 169 MSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTA 228
+ AA LFD MPER++V++N M+SGY+ G+ + +LF M + + T S+L
Sbjct: 168 LPAARRLFDEMPERDLVTYNSMLSGYAAEGDIANARELFDGMPER----DVVTWNSMLAG 223
Query: 229 CGRSARFNEGRSVHGY-TVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVC 287
+ + + VR + N +LD Y++ +E+ + VFD M R+ V
Sbjct: 224 YAQRGDMESAKRLFDVMPVRDVVSWNSMLDG-----YAQTGDIEMTRMVFDGMPRRSTVS 278
Query: 288 WNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKY 347
WN ++ + E + LF A++ GGS P+E TF+ V+ AC L GR +
Sbjct: 279 WNVVLALYAKVKDWHECLNLFDAMM---AVGGS-KPNEKTFVSVLTACGHLGDLERGR-W 333
Query: 348 FRQMI--DFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPE 389
++ + ++ P+ M +YA + A+EI M E
Sbjct: 334 VHHLVHESWERLLPDVLLLTAMMTMYAKCGVMGTAKEIFDLMTE 377
>gi|225447243|ref|XP_002272819.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g03540-like [Vitis vinifera]
Length = 633
Score = 230 bits (587), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 164/542 (30%), Positives = 250/542 (46%), Gaps = 85/542 (15%)
Query: 5 LQIQAHLITSGL----FFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIK 60
LQI AH+I SGL F NS T+ K DF P+ T VF + ++I
Sbjct: 79 LQIHAHVIKSGLEFDRFVGNSLLTL-YFKLGTDF--PE-TRKVFDGLFVKDVISWTSMIS 134
Query: 61 AYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDF 120
Y P + + +M+ G PN++T ++ +C++ G ++ G + HG+ L G D
Sbjct: 135 GYVRVGKPMNSLELFWKMLAYGVEPNAFTLSAVIKACSELGDLKLGRIFHGVVLGRGFDS 194
Query: 121 ELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMP 180
+ ++LI+M+G A+D AR +F ++ D I W SI+S R+ A F M
Sbjct: 195 NYVIASALIDMHGRNCALDDARQLFDELLEPDAICWTSIISALTRNDFFDEALRFFYSMQ 254
Query: 181 ER----------------------------------------NVVSWNIMISGYSKSGNP 200
NVV + ++ Y K G+
Sbjct: 255 RDHGMCPDGFTFGTVLTACGNLGRLKQGKEVHAKVITTGFCGNVVVESSLVDMYGKCGSV 314
Query: 201 GCSLKLFREM-MKSG----------------------FRGNDKT----MASVLTACGRSA 233
G S ++F M +K+ FR +K ++L C A
Sbjct: 315 GESQRIFDRMPIKNSVSWSALLGGYCQNGDFKSVIQIFRKMEKVDLYCFGTILRTCAGLA 374
Query: 234 RFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMIL 293
+G+ VH +R ++I+++AL+DLY+KC +E AQ +FD M RNL+ WN+MI
Sbjct: 375 AVRQGKEVHCQYIRKGGWRDVIVESALVDLYAKCGCIEYAQTIFDQMPVRNLITWNSMIG 434
Query: 294 GHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMID 353
G +G+ EE +++F +V I PD I+FIG++ AC L+ EGR+YF M
Sbjct: 435 GFAQNGRGEEALRIFNQMVK-----EGIKPDYISFIGILFACSHRGLVDEGREYFISMTK 489
Query: 354 FYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGA 413
Y IK HY CM +L A L EEA EIL + + D+ S +W +LL C
Sbjct: 490 DYGIKVGIEHYSCMVDLLGRAGLLEEA-EILIETSDFRDDSS----LWAALLGACTTCTN 544
Query: 414 VAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVD 473
+ ER+AK ++++P Y L NVY G+W D R+R LMK R + +MPG ++
Sbjct: 545 YEIAERIAKRVMELEPDYHLSYVLLANVYKAVGRWNDALRIRRLMKDRGVNKMPGKSWIE 604
Query: 474 LK 475
K
Sbjct: 605 TK 606
Score = 103 bits (258), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 77/317 (24%), Positives = 139/317 (43%), Gaps = 43/317 (13%)
Query: 90 FVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGA-MDCARNMFVQM 148
+ SL +C K G H +K+G++F+ V NSL+ +Y G R +F +
Sbjct: 62 YASLLQTCTKVLAFNHGLQIHAHVIKSGLEFDRFVGNSLLTLYFKLGTDFPETRKVFDGL 121
Query: 149 SPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFR 208
+D+ISW S++SG+VR G P SL+LF
Sbjct: 122 FVKDVISWTSMISGYVR-------------------------------VGKPMNSLELFW 150
Query: 209 EMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQ 268
+M+ G N T+++V+ AC GR HG + N ++ +ALID++ +
Sbjct: 151 KMLAYGVEPNAFTLSAVIKACSELGDLKLGRIFHGVVLGRGFDSNYVIASALIDMHGRNC 210
Query: 269 KVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITF 328
++ A+++FD + + + +CW ++I + +E ++ F ++ + PD TF
Sbjct: 211 ALDDARQLFDELLEPDAICWTSIISALTRNDFFDEALRFFYSMQRDH----GMCPDGFTF 266
Query: 329 IGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMP 388
V+ AC L +G++ ++I N + ++Y E++ I +MP
Sbjct: 267 GTVLTACGNLGRLKQGKEVHAKVIT-TGFCGNVVVESSLVDMYGKCGSVGESQRIFDRMP 325
Query: 389 EDNDNMSFESIMWVSLL 405
N S+ W +LL
Sbjct: 326 IKN------SVSWSALL 336
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 47/212 (22%), Positives = 95/212 (44%), Gaps = 13/212 (6%)
Query: 196 KSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNII 255
KSG +L+L + + AS+L C + FN G +H + +++ L+ +
Sbjct: 36 KSGELSGALQLLKSIDPGEISAKPVLYASLLQTCTKVLAFNHGLQIHAHVIKSGLEFDRF 95
Query: 256 LDTALIDLYSKC-QKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNG 314
+ +L+ LY K ++VFD + ++++ W +MI G+ GKP ++LF ++
Sbjct: 96 VGNSLLTLYFKLGTDFPETRKVFDGLFVKDVISWTSMISGYVRVGKPMNSLELFWKML-- 153
Query: 315 TVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGA 374
+ P+ T VI AC L GR F ++ N+ + +++
Sbjct: 154 ---AYGVEPNAFTLSAVIKACSELGDLKLGR-IFHGVVLGRGFDSNYVIASALIDMHGRN 209
Query: 375 ELTEEAEEILRKMPEDNDNMSFESIMWVSLLS 406
++A ++ ++ E ++I W S++S
Sbjct: 210 CALDDARQLFDELLEP------DAICWTSIIS 235
>gi|356529748|ref|XP_003533450.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g31920-like [Glycine max]
Length = 604
Score = 230 bits (587), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 143/485 (29%), Positives = 247/485 (50%), Gaps = 47/485 (9%)
Query: 1 MKQLLQIQAHLITSGLFFNNSFWTINLLKHSA--DFGSPDYTVLVFKCINNPGTFCVNAV 58
M++ Q+ AH++ GLF++ SF NL+ A +GS +Y +F+ I PG+F N +
Sbjct: 43 MEEFKQVHAHILKLGLFYD-SFCGSNLVATCALSRWGSMEYACSIFRQIEEPGSFEYNTM 101
Query: 59 IKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGV 118
I+ NS ++ ++ Y++M++ G P+++T+ + +C+ G ++ G H K G+
Sbjct: 102 IRGNVNSMNLEEALLLYVEMLERGIEPDNFTYPFVLKACSLLGALKEGVQIHAHVFKAGL 161
Query: 119 DFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDI 178
+ ++ V N LINMYG GA++ A +F Q
Sbjct: 162 EGDVFVQNGLINMYGKCGAIEHASVVFEQ------------------------------- 190
Query: 179 MPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSG-FRGNDKTMASVLTACGRSARFNE 237
M E++V SW+ +I ++ L L +M G R + + S L+AC N
Sbjct: 191 MDEKSVASWSSIIGAHASVEMWHECLMLLGDMSGEGRHRAEESILVSALSACTHLGSPNF 250
Query: 238 GRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCI 297
GR +HG +R + N+ + T+LID+Y K +E VF +MA +N + +I G I
Sbjct: 251 GRCIHGILLRNISELNVAVKTSLIDMYVKSGSLEKGLCVFQNMAQKNRYSYTVIITGLAI 310
Query: 298 HGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKI 357
HG+ E + +F+ ++ +A PD++ ++GV+ AC A L+ EG + F ++ +KI
Sbjct: 311 HGRGREALSVFSDMLEEGLA-----PDDVVYVGVLSACSHAGLVNEGLQCFNRLQFEHKI 365
Query: 358 KPNFAHYWCMANLYAGAELTEEAEEILRKMP-EDNDNMSFESIMWVSLLSLCRFQGAVAM 416
KP HY CM +L A + + A ++++ MP + ND ++W SLLS C+ + +
Sbjct: 366 KPTIQHYGCMVDLMGRAGMLKGAYDLIKSMPIKPND------VVWRSLLSACKVHHNLEI 419
Query: 417 VERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLKE 476
E A++ ++ + Y L N+YA A +W DVAR+R M ++ + + PG LV+
Sbjct: 420 GEIAAENIFKLNQHNPGDYLVLANMYARAKKWADVARIRTEMAEKHLVQTPGFSLVEANR 479
Query: 477 VVEKL 481
V K
Sbjct: 480 NVYKF 484
>gi|297743367|emb|CBI36234.3| unnamed protein product [Vitis vinifera]
Length = 906
Score = 230 bits (587), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 146/499 (29%), Positives = 247/499 (49%), Gaps = 53/499 (10%)
Query: 6 QIQAHLITSGLF----FNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKA 61
++ ++I +G NNS L++ + G D +VF + A+I
Sbjct: 317 EVHGYVIKTGFVAEVSVNNS-----LIQMHSSVGCWDEAEMVFSKMEFKDLVSWTAMISG 371
Query: 62 YSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFE 121
Y + +P++ V Y M G +P+ T S+ +CA G +++G M H A + G+
Sbjct: 372 YEKNGLPEKAVETYTIMEHEGVVPDEITIASVLSACAGLGLLDKGIMLHEFADRTGLTSY 431
Query: 122 LPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPE 181
+ V NSLI+MY +D A E+F +P
Sbjct: 432 VIVANSLIDMYSKCRCID-------------------------------KALEVFHRIPN 460
Query: 182 RNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSV 241
+NV+SW +I G + +L F++M+ S + N T+ SVL+AC R + G+ +
Sbjct: 461 KNVISWTSIILGLRLNYRSFEALFFFQQMILS-LKPNSVTLVSVLSACARIGALSCGKEI 519
Query: 242 HGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKP 301
H + +RT L + L AL+D+Y +C ++E A F+S ++++ WN ++ G+ GK
Sbjct: 520 HAHALRTGLGFDGFLPNALLDMYVRCGRMEPAWNQFNS-CEKDVASWNILLTGYAQQGKG 578
Query: 302 EEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNF 361
++LF ++ V +PDEITF ++CAC R+ ++T+G +YF M + I PN
Sbjct: 579 GLAVELFHKMIESDV-----NPDEITFTSLLCACSRSGMVTDGLEYFESMEHKFHIAPNL 633
Query: 362 AHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLA 421
HY + +L A E+A E ++KMP D D +W +LL+ CR V + E A
Sbjct: 634 KHYASVVDLLGRAGRLEDAYEFIKKMPIDPD-----PAIWGALLNACRIYQNVELGELAA 688
Query: 422 KSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLKEVVEKL 481
+ +MD + Y L N+YA +G+W++VARVR++M++ R+ PGC V++ V
Sbjct: 689 QHIFEMDTKSVGYYILLCNLYADSGKWDEVARVRKIMRENRLTVDPGCSWVEVAGQVHAF 748
Query: 482 KVGHFWRGGMKEEVNKMME 500
G + +K E+N ++E
Sbjct: 749 LTGDDFHPQIK-EINAVLE 766
Score = 132 bits (331), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 104/384 (27%), Positives = 174/384 (45%), Gaps = 53/384 (13%)
Query: 27 LLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPN 86
LL FG VF + F N ++ Y+ + D+ + Y +M+ G P+
Sbjct: 135 LLSMFVRFGDLVEAWYVFGKMAERDLFSWNVLVGGYAKAGYFDEALNLYHRMLWVGIRPD 194
Query: 87 SYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFV 146
YTF + +C + RG H ++ G + ++ V+N+LI MY G + AR +F
Sbjct: 195 VYTFPCVLRTCGGLPDLARGREVHLHVIRYGFESDVDVVNALITMYVKCGDIFSARLVFD 254
Query: 147 QMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKL 206
+M RD ISWN+++SG+ + ++ + G L+L
Sbjct: 255 RMPRRDRISWNAMISGYFEN---------------------DVCLEG----------LRL 283
Query: 207 FREMMKSGFRGND-KTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYS 265
F MM+ F D TM SV++AC GR VHGY ++T + ++ +LI ++S
Sbjct: 284 FF-MMREFFVDPDLMTMTSVISACEALGDERLGREVHGYVIKTGFVAEVSVNNSLIQMHS 342
Query: 266 KCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDE 325
+ A+ VF M ++LV W AMI G+ +G PE+ ++ +T + + V PDE
Sbjct: 343 SVGCWDEAEMVFSKMEFKDLVSWTAMISGYEKNGLPEKAVETYTIMEHEGVV-----PDE 397
Query: 326 ITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMAN----LYAGAELTEEAE 381
IT V+ AC LL +G M+ + + Y +AN +Y+ ++A
Sbjct: 398 ITIASVLSACAGLGLLDKG-----IMLHEFADRTGLTSYVIVANSLIDMYSKCRCIDKAL 452
Query: 382 EILRKMPEDNDNMSFESIMWVSLL 405
E+ ++P N I W S++
Sbjct: 453 EVFHRIPNKN------VISWTSII 470
Score = 128 bits (321), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 115/461 (24%), Positives = 197/461 (42%), Gaps = 79/461 (17%)
Query: 42 LVFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTG 101
LVF + NA+I Y + V +G+ + M + P+ T S+ +C G
Sbjct: 251 LVFDRMPRRDRISWNAMISGYFENDVCLEGLRLFFMMREFFVDPDLMTMTSVISACEALG 310
Query: 102 CVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVS 161
G HG +K G E+ V NSLI M+ G D A +F +
Sbjct: 311 DERLGREVHGYVIKTGFVAEVSVNNSLIQMHSSVGCWDEAEMVFSK-------------- 356
Query: 162 GHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKT 221
M +++VSW MISGY K+G P +++ + M G ++ T
Sbjct: 357 -----------------MEFKDLVSWTAMISGYEKNGLPEKAVETYTIMEHEGVVPDEIT 399
Query: 222 MASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMA 281
+ASVL+AC ++G +H + RT L +I+ +LID+YSKC+ ++ A VF +
Sbjct: 400 IASVLSACAGLGLLDKGIMLHEFADRTGLTSYVIVANSLIDMYSKCRCIDKALEVFHRIP 459
Query: 282 DRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELL 341
++N++ W ++ILG ++ + E + F ++ S+ P+ +T + V+ AC R L
Sbjct: 460 NKNVISWTSIILGLRLNYRSFEALFFFQQMIL------SLKPNSVTLVSVLSACARIGAL 513
Query: 342 TEGRKYFRQ---------------MIDFY----KIKP----------NFAHYWCMANLYA 372
+ G++ ++D Y +++P + A + + YA
Sbjct: 514 SCGKEIHAHALRTGLGFDGFLPNALLDMYVRCGRMEPAWNQFNSCEKDVASWNILLTGYA 573
Query: 373 GAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQ-- 430
A E+ KM E + N + I + SLL C G MV + F M+ +
Sbjct: 574 QQGKGGLAVELFHKMIESDVNP--DEITFTSLLCACSRSG---MVTDGLEYFESMEHKFH 628
Query: 431 ---DFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPG 468
+ Y ++++ AG+ ED E +KK + P
Sbjct: 629 IAPNLKHYASVVDLLGRAGRLED---AYEFIKKMPIDPDPA 666
Score = 112 bits (280), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 79/248 (31%), Positives = 126/248 (50%), Gaps = 15/248 (6%)
Query: 157 NSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFR 216
N+++S VR GD+ A +F M ER++ SWN+++ GY+K+G +L L+ M+ G R
Sbjct: 133 NALLSMFVRFGDLVEAWYVFGKMAERDLFSWNVLVGGYAKAGYFDEALNLYHRMLWVGIR 192
Query: 217 GNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRV 276
+ T VL CG GR VH + +R + ++ + ALI +Y KC + A+ V
Sbjct: 193 PDVYTFPCVLRTCGGLPDLARGREVHLHVIRYGFESDVDVVNALITMYVKCGDIFSARLV 252
Query: 277 FDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACV 336
FD M R+ + WNAMI G+ + EG++LF + V PD +T VI AC
Sbjct: 253 FDRMPRRDRISWNAMISGYFENDVCLEGLRLFFMMREFFV-----DPDLMTMTSVISAC- 306
Query: 337 RAELLTEGRKYFRQMIDFYKIKPNFAHYWCMAN----LYAGAELTEEAEEILRKMPEDND 392
E L + R + + Y IK F + N +++ +EAE + KM E D
Sbjct: 307 --EALGDER--LGREVHGYVIKTGFVAEVSVNNSLIQMHSSVGCWDEAEMVFSKM-EFKD 361
Query: 393 NMSFESIM 400
+S+ +++
Sbjct: 362 LVSWTAMI 369
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/136 (26%), Positives = 63/136 (46%), Gaps = 5/136 (3%)
Query: 219 DKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFD 278
++T ++L C +EG VH Y +T + + L AL+ ++ + + A VF
Sbjct: 94 EETYIALLRLCEWKRAASEGSRVHSYVSKTVTRLGVRLGNALLSMFVRFGDLVEAWYVFG 153
Query: 279 SMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRA 338
MA+R+L WN ++ G+ G +E + L+ ++ I PD TF V+ C
Sbjct: 154 KMAERDLFSWNVLVGGYAKAGYFDEALNLYHRML-----WVGIRPDVYTFPCVLRTCGGL 208
Query: 339 ELLTEGRKYFRQMIDF 354
L GR+ +I +
Sbjct: 209 PDLARGREVHLHVIRY 224
>gi|297720883|ref|NP_001172804.1| Os02g0151000 [Oryza sativa Japonica Group]
gi|51535971|dbj|BAD38052.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
gi|218190072|gb|EEC72499.1| hypothetical protein OsI_05871 [Oryza sativa Indica Group]
gi|255670608|dbj|BAH91533.1| Os02g0151000 [Oryza sativa Japonica Group]
Length = 922
Score = 230 bits (587), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 126/444 (28%), Positives = 226/444 (50%), Gaps = 11/444 (2%)
Query: 57 AVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKN 116
+I Y+ + ++ + ++ ++G +P+ + S+F +C+ +E G H LA+K
Sbjct: 389 GMIAGYAQNGRSEEALGLLQELHRSGMLPSLSSLTSIFFACSNIVALETGTQVHSLAVKV 448
Query: 117 GVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELF 176
G F N+LI MYG M+ AR +F +M +D++SWNS ++ V++ + A F
Sbjct: 449 GCQFNSFACNALITMYGKCRNMEYARQVFSRMVTKDIVSWNSFLAALVQNDLLDEARNTF 508
Query: 177 DIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFN 236
D M R+ VSW +IS Y+ + ++ F+ M N + +L CG
Sbjct: 509 DNMLSRDDVSWTTIISAYAHAEQSNEAMGAFKTMFCEHELPNSPILTILLGVCGSLGASK 568
Query: 237 EGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHC 296
G+ +H ++ + +I+ ALI +Y KC + ++R+FD M +R++ WN +I G+
Sbjct: 569 IGQQIHTVAIKLGMDSELIVANALISMYFKCGCAD-SRRIFDLMEERDIFTWNTIITGYA 627
Query: 297 IHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYK 356
HG E IK++ + + V P+E+TF+G++ AC A L+ EG K+F+ M Y
Sbjct: 628 QHGLGREAIKMYQHMESAGVL-----PNEVTFVGLLNACSHAGLVDEGWKFFKSMSQDYG 682
Query: 357 IKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAM 416
+ P HY CM +L + AE+ + MP + D +++W +LL C+ +
Sbjct: 683 LTPLPEHYACMVDLLGRTGDVQGAEQFIYDMPIEPD-----TVIWSALLGACKIHKNAEI 737
Query: 417 VERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLKE 476
+R A+ ++P + Y L N+Y+ G W +VA VR++MK++ + + PGC +K+
Sbjct: 738 GKRAAEKLFRIEPSNAGNYVMLSNIYSSLGMWGEVAEVRKIMKQQGVIKEPGCSWTQIKD 797
Query: 477 VVEKLKVGHFWRGGMKEEVNKMME 500
+ G ++E V + E
Sbjct: 798 KMHSFVTGDKQHEQIEEIVATLEE 821
Score = 127 bits (318), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 80/297 (26%), Positives = 149/297 (50%), Gaps = 18/297 (6%)
Query: 56 NAVIKAYS-NSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLAL 114
A++ YS ++ V D + F+ MI+ N YT+ ++ + + G ++ +
Sbjct: 263 TAILNVYSRDTSVLDTAIKFFESMIER----NEYTWSTMIAALSHGGRIDAAIAVYE--- 315
Query: 115 KNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHE 174
++ V + +LI G +D AR +F Q+ ++SWN++++G++++G ++ A E
Sbjct: 316 RDPVK-SIACRTALITGLAQCGRIDDARILFEQIPEPIVVSWNALITGYMQNGMVNEAKE 374
Query: 175 LFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSAR 234
LFD MP RN +SW MI+GY+++G +L L +E+ +SG + ++ S+ AC
Sbjct: 375 LFDKMPFRNTISWAGMIAGYAQNGRSEEALGLLQELHRSGMLPSLSSLTSIFFACSNIVA 434
Query: 235 FNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILG 294
G VH V+ + N ALI +Y KC+ +E A++VF M +++V WN+ +
Sbjct: 435 LETGTQVHSLAVKVGCQFNSFACNALITMYGKCRNMEYARQVFSRMVTKDIVSWNSFLAA 494
Query: 295 HCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQM 351
+ +E F + +S D++++ +I A AE E F+ M
Sbjct: 495 LVQNDLLDEARNTFDNM---------LSRDDVSWTTIISAYAHAEQSNEAMGAFKTM 542
Score = 125 bits (315), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 100/386 (25%), Positives = 179/386 (46%), Gaps = 33/386 (8%)
Query: 43 VFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGC 102
VF + N++I AY ++ +PD Y I G M +S +G +
Sbjct: 56 VFDAMPRRDIIAWNSMISAYCHNGMPDAARDLY-DAISGGNMRTGAILLSGYGRLGRV-- 112
Query: 103 VERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSG 162
+E + G+ +N V + N++I+ Y G + AR +F M RD+ SWNS+++G
Sbjct: 113 LEARRVFDGMLERNTVAW-----NAMISCYVQNGDITMARRLFDAMPSRDVSSWNSMLTG 167
Query: 163 HVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTM 222
+ S M A LF+ MPERN+VSW +MISGY + N G + +F +M + G +
Sbjct: 168 YCHSLQMVDARNLFEKMPERNLVSWTVMISGYGRIENHGKAWDIFCKMHREGLLPDQSNF 227
Query: 223 ASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKV-EVAQRVFDSMA 281
AS L+A + S+ ++T + ++++ TA++++YS+ V + A + F+SM
Sbjct: 228 ASALSAVKGLGNLDVLESLRVLALKTGFERDVVIGTAILNVYSRDTSVLDTAIKFFESMI 287
Query: 282 DRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELL 341
+RN W+ MI G+ + I ++ ++A I + C R +
Sbjct: 288 ERNEYTWSTMIAALSHGGRIDAAIAVYERDPVKSIAC------RTALITGLAQCGR---I 338
Query: 342 TEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMW 401
+ R F Q+ + P + + Y + EA+E+ KMP N +I W
Sbjct: 339 DDARILFEQIPE-----PIVVSWNALITGYMQNGMVNEAKELFDKMPFRN------TISW 387
Query: 402 VSLLSLC----RFQGAVAMVERLAKS 423
+++ R + A+ +++ L +S
Sbjct: 388 AGMIAGYAQNGRSEEALGLLQELHRS 413
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 51/207 (24%), Positives = 89/207 (42%), Gaps = 50/207 (24%)
Query: 119 DFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDI 178
+ E+ ++ I G G + AR +F M RD+I+WNS++S + +G AA +L+D
Sbjct: 31 ELEVSGCSARIRDLGRLGRVGEAREVFDAMPRRDIIAWNSMISAYCHNGMPDAARDLYDA 90
Query: 179 MPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEG 238
+ N+ + I++SGY GR R E
Sbjct: 91 ISGGNMRTGAILLSGY-----------------------------------GRLGRVLEA 115
Query: 239 RSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHC-- 296
R V L+ N + A+I Y + + +A+R+FD+M R++ WN+M+ G+C
Sbjct: 116 RRV----FDGMLERNTVAWNAMISCYVQNGDITMARRLFDAMPSRDVSSWNSMLTGYCHS 171
Query: 297 ---------IHGKPEEGIKLFTALVNG 314
PE + +T +++G
Sbjct: 172 LQMVDARNLFEKMPERNLVSWTVMISG 198
Score = 45.8 bits (107), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 37/64 (57%)
Query: 258 TALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVA 317
+A I + +V A+ VFD+M R+++ WN+MI +C +G P+ L+ A+ G +
Sbjct: 38 SARIRDLGRLGRVGEAREVFDAMPRRDIIAWNSMISAYCHNGMPDAARDLYDAISGGNMR 97
Query: 318 GGSI 321
G+I
Sbjct: 98 TGAI 101
Score = 44.3 bits (103), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 43/204 (21%), Positives = 81/204 (39%), Gaps = 28/204 (13%)
Query: 43 VFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGC 102
+F + F N +I Y+ + + + Y M G +PN TFV L +C+ G
Sbjct: 607 IFDLMEERDIFTWNTIITGYAQHGLGREAIKMYQHMESAGVLPNEVTFVGLLNACSHAGL 666
Query: 103 VERG-GMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPR-DLISWNSIV 160
V+ G ++ G+ ++++ G G + A M D + W++++
Sbjct: 667 VDEGWKFFKSMSQDYGLTPLPEHYACMVDLLGRTGDVQGAEQFIYDMPIEPDTVIWSALL 726
Query: 161 SG---HVRSGDMS--AAHELFDIMPERNVVSWNIMISGYSKSG----------------- 198
H ++ ++ AA +LF I P N ++ ++ + YS G
Sbjct: 727 GACKIH-KNAEIGKRAAEKLFRIEPS-NAGNYVMLSNIYSSLGMWGEVAEVRKIMKQQGV 784
Query: 199 --NPGCSLKLFREMMKSGFRGNDK 220
PGCS ++ M S G+ +
Sbjct: 785 IKEPGCSWTQIKDKMHSFVTGDKQ 808
>gi|359482660|ref|XP_002285225.2| PREDICTED: pentatricopeptide repeat-containing protein At1g15510,
chloroplastic-like [Vitis vinifera]
Length = 872
Score = 230 bits (587), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 146/499 (29%), Positives = 247/499 (49%), Gaps = 53/499 (10%)
Query: 6 QIQAHLITSGLF----FNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKA 61
++ ++I +G NNS L++ + G D +VF + A+I
Sbjct: 317 EVHGYVIKTGFVAEVSVNNS-----LIQMHSSVGCWDEAEMVFSKMEFKDLVSWTAMISG 371
Query: 62 YSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFE 121
Y + +P++ V Y M G +P+ T S+ +CA G +++G M H A + G+
Sbjct: 372 YEKNGLPEKAVETYTIMEHEGVVPDEITIASVLSACAGLGLLDKGIMLHEFADRTGLTSY 431
Query: 122 LPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPE 181
+ V NSLI+MY +D A E+F +P
Sbjct: 432 VIVANSLIDMYSKCRCID-------------------------------KALEVFHRIPN 460
Query: 182 RNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSV 241
+NV+SW +I G + +L F++M+ S + N T+ SVL+AC R + G+ +
Sbjct: 461 KNVISWTSIILGLRLNYRSFEALFFFQQMILS-LKPNSVTLVSVLSACARIGALSCGKEI 519
Query: 242 HGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKP 301
H + +RT L + L AL+D+Y +C ++E A F+S ++++ WN ++ G+ GK
Sbjct: 520 HAHALRTGLGFDGFLPNALLDMYVRCGRMEPAWNQFNS-CEKDVASWNILLTGYAQQGKG 578
Query: 302 EEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNF 361
++LF ++ V +PDEITF ++CAC R+ ++T+G +YF M + I PN
Sbjct: 579 GLAVELFHKMIESDV-----NPDEITFTSLLCACSRSGMVTDGLEYFESMEHKFHIAPNL 633
Query: 362 AHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLA 421
HY + +L A E+A E ++KMP D D +W +LL+ CR V + E A
Sbjct: 634 KHYASVVDLLGRAGRLEDAYEFIKKMPIDPD-----PAIWGALLNACRIYQNVELGELAA 688
Query: 422 KSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLKEVVEKL 481
+ +MD + Y L N+YA +G+W++VARVR++M++ R+ PGC V++ V
Sbjct: 689 QHIFEMDTKSVGYYILLCNLYADSGKWDEVARVRKIMRENRLTVDPGCSWVEVAGQVHAF 748
Query: 482 KVGHFWRGGMKEEVNKMME 500
G + +K E+N ++E
Sbjct: 749 LTGDDFHPQIK-EINAVLE 766
Score = 132 bits (331), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 104/384 (27%), Positives = 174/384 (45%), Gaps = 53/384 (13%)
Query: 27 LLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPN 86
LL FG VF + F N ++ Y+ + D+ + Y +M+ G P+
Sbjct: 135 LLSMFVRFGDLVEAWYVFGKMAERDLFSWNVLVGGYAKAGYFDEALNLYHRMLWVGIRPD 194
Query: 87 SYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFV 146
YTF + +C + RG H ++ G + ++ V+N+LI MY G + AR +F
Sbjct: 195 VYTFPCVLRTCGGLPDLARGREVHLHVIRYGFESDVDVVNALITMYVKCGDIFSARLVFD 254
Query: 147 QMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKL 206
+M RD ISWN+++SG+ + ++ + G L+L
Sbjct: 255 RMPRRDRISWNAMISGYFEN---------------------DVCLEG----------LRL 283
Query: 207 FREMMKSGFRGND-KTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYS 265
F MM+ F D TM SV++AC GR VHGY ++T + ++ +LI ++S
Sbjct: 284 FF-MMREFFVDPDLMTMTSVISACEALGDERLGREVHGYVIKTGFVAEVSVNNSLIQMHS 342
Query: 266 KCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDE 325
+ A+ VF M ++LV W AMI G+ +G PE+ ++ +T + + V PDE
Sbjct: 343 SVGCWDEAEMVFSKMEFKDLVSWTAMISGYEKNGLPEKAVETYTIMEHEGVV-----PDE 397
Query: 326 ITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMAN----LYAGAELTEEAE 381
IT V+ AC LL +G M+ + + Y +AN +Y+ ++A
Sbjct: 398 ITIASVLSACAGLGLLDKG-----IMLHEFADRTGLTSYVIVANSLIDMYSKCRCIDKAL 452
Query: 382 EILRKMPEDNDNMSFESIMWVSLL 405
E+ ++P N I W S++
Sbjct: 453 EVFHRIPNKN------VISWTSII 470
Score = 128 bits (321), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 115/461 (24%), Positives = 197/461 (42%), Gaps = 79/461 (17%)
Query: 42 LVFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTG 101
LVF + NA+I Y + V +G+ + M + P+ T S+ +C G
Sbjct: 251 LVFDRMPRRDRISWNAMISGYFENDVCLEGLRLFFMMREFFVDPDLMTMTSVISACEALG 310
Query: 102 CVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVS 161
G HG +K G E+ V NSLI M+ G D A +F +
Sbjct: 311 DERLGREVHGYVIKTGFVAEVSVNNSLIQMHSSVGCWDEAEMVFSK-------------- 356
Query: 162 GHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKT 221
M +++VSW MISGY K+G P +++ + M G ++ T
Sbjct: 357 -----------------MEFKDLVSWTAMISGYEKNGLPEKAVETYTIMEHEGVVPDEIT 399
Query: 222 MASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMA 281
+ASVL+AC ++G +H + RT L +I+ +LID+YSKC+ ++ A VF +
Sbjct: 400 IASVLSACAGLGLLDKGIMLHEFADRTGLTSYVIVANSLIDMYSKCRCIDKALEVFHRIP 459
Query: 282 DRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELL 341
++N++ W ++ILG ++ + E + F ++ S+ P+ +T + V+ AC R L
Sbjct: 460 NKNVISWTSIILGLRLNYRSFEALFFFQQMIL------SLKPNSVTLVSVLSACARIGAL 513
Query: 342 TEGRKYFRQ---------------MIDFY----KIKP----------NFAHYWCMANLYA 372
+ G++ ++D Y +++P + A + + YA
Sbjct: 514 SCGKEIHAHALRTGLGFDGFLPNALLDMYVRCGRMEPAWNQFNSCEKDVASWNILLTGYA 573
Query: 373 GAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQ-- 430
A E+ KM E + N + I + SLL C G MV + F M+ +
Sbjct: 574 QQGKGGLAVELFHKMIESDVNP--DEITFTSLLCACSRSG---MVTDGLEYFESMEHKFH 628
Query: 431 ---DFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPG 468
+ Y ++++ AG+ ED E +KK + P
Sbjct: 629 IAPNLKHYASVVDLLGRAGRLED---AYEFIKKMPIDPDPA 666
Score = 112 bits (279), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 79/248 (31%), Positives = 126/248 (50%), Gaps = 15/248 (6%)
Query: 157 NSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFR 216
N+++S VR GD+ A +F M ER++ SWN+++ GY+K+G +L L+ M+ G R
Sbjct: 133 NALLSMFVRFGDLVEAWYVFGKMAERDLFSWNVLVGGYAKAGYFDEALNLYHRMLWVGIR 192
Query: 217 GNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRV 276
+ T VL CG GR VH + +R + ++ + ALI +Y KC + A+ V
Sbjct: 193 PDVYTFPCVLRTCGGLPDLARGREVHLHVIRYGFESDVDVVNALITMYVKCGDIFSARLV 252
Query: 277 FDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACV 336
FD M R+ + WNAMI G+ + EG++LF + V PD +T VI AC
Sbjct: 253 FDRMPRRDRISWNAMISGYFENDVCLEGLRLFFMMREFFV-----DPDLMTMTSVISAC- 306
Query: 337 RAELLTEGRKYFRQMIDFYKIKPNFAHYWCMAN----LYAGAELTEEAEEILRKMPEDND 392
E L + R + + Y IK F + N +++ +EAE + KM E D
Sbjct: 307 --EALGDER--LGREVHGYVIKTGFVAEVSVNNSLIQMHSSVGCWDEAEMVFSKM-EFKD 361
Query: 393 NMSFESIM 400
+S+ +++
Sbjct: 362 LVSWTAMI 369
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/136 (26%), Positives = 63/136 (46%), Gaps = 5/136 (3%)
Query: 219 DKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFD 278
++T ++L C +EG VH Y +T + + L AL+ ++ + + A VF
Sbjct: 94 EETYIALLRLCEWKRAASEGSRVHSYVSKTVTRLGVRLGNALLSMFVRFGDLVEAWYVFG 153
Query: 279 SMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRA 338
MA+R+L WN ++ G+ G +E + L+ ++ I PD TF V+ C
Sbjct: 154 KMAERDLFSWNVLVGGYAKAGYFDEALNLYHRML-----WVGIRPDVYTFPCVLRTCGGL 208
Query: 339 ELLTEGRKYFRQMIDF 354
L GR+ +I +
Sbjct: 209 PDLARGREVHLHVIRY 224
>gi|5262797|emb|CAB45902.1| putative protein (fragment) [Arabidopsis thaliana]
gi|7268904|emb|CAB79107.1| putative protein (fragment) [Arabidopsis thaliana]
Length = 1495
Score = 230 bits (587), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 139/489 (28%), Positives = 248/489 (50%), Gaps = 45/489 (9%)
Query: 1 MKQLLQIQAHLITSGLFFNNSFWTINLLKHSADFGSP---DYTVLVFKCINNP-GTFCVN 56
+ +L QI A I G+ +++ +L+ + SP Y VF I P F N
Sbjct: 30 ITKLRQIHAFSIRHGVSISDAELGKHLIFYLVSLPSPPPMSYAHKVFSKIEKPINVFIWN 89
Query: 57 AVIKAYSNSCVPDQGVVFYLQMIKNGFM-PNSYTFVSLFGSCAKTGCVERGGMCHGLALK 115
+I+ Y+ Y +M +G + P+++T+ L + V G H + ++
Sbjct: 90 TLIRGYAEIGNSISAFSLYREMRVSGLVEPDTHTYPFLIKAVTTMADVRLGETIHSVVIR 149
Query: 116 NGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHEL 175
+G + V NSL+++Y +C GD+++A+++
Sbjct: 150 SGFGSLIYVQNSLLHLYA-----NC--------------------------GDVASAYKV 178
Query: 176 FDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARF 235
FD MPE+++V+WN +I+G++++G P +L L+ EM G + + T+ S+L+AC +
Sbjct: 179 FDKMPEKDLVAWNSVINGFAENGKPEEALALYTEMNSKGIKPDGFTIVSLLSACAKIGAL 238
Query: 236 NEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGH 295
G+ VH Y ++ L N+ L+DLY++C +VE A+ +FD M D+N V W ++I+G
Sbjct: 239 TLGKRVHVYMIKVGLTRNLHSSNVLLDLYARCGRVEEAKTLFDEMVDKNSVSWTSLIVGL 298
Query: 296 CIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFY 355
++G +E I+LF + + + P EITF+G++ AC ++ EG +YFR+M + Y
Sbjct: 299 AVNGFGKEAIELFKYMESTE----GLLPCEITFVGILYACSHCGMVKEGFEYFRRMREEY 354
Query: 356 KIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVA 415
KI+P H+ CM +L A A ++A E ++ MP M ++W +LL C G
Sbjct: 355 KIEPRIEHFGCMVDLLARAGQVKKAYEYIKSMP-----MQPNVVIWRTLLGACTVHGDSD 409
Query: 416 MVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLK 475
+ E + ++P Y L N+YA +W DV ++R+ M + + ++PG LV++
Sbjct: 410 LAEFARIQILQLEPNHSGDYVLLSNMYASEQRWSDVQKIRKQMLRDGVKKVPGHSLVEVG 469
Query: 476 EVVEKLKVG 484
V + +G
Sbjct: 470 NRVHEFLMG 478
>gi|222622177|gb|EEE56309.1| hypothetical protein OsJ_05395 [Oryza sativa Japonica Group]
Length = 922
Score = 230 bits (587), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 126/444 (28%), Positives = 226/444 (50%), Gaps = 11/444 (2%)
Query: 57 AVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKN 116
+I Y+ + ++ + ++ ++G +P+ + S+F +C+ +E G H LA+K
Sbjct: 389 GMIAGYAQNGRSEEALGLLQELHRSGMLPSLSSLTSIFFACSNIVALETGTQVHSLAVKV 448
Query: 117 GVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELF 176
G F N+LI MYG M+ AR +F +M +D++SWNS ++ V++ + A F
Sbjct: 449 GCQFNSFACNALITMYGKCRNMEYARQVFSRMVTKDIVSWNSFLAALVQNDLLDEARNTF 508
Query: 177 DIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFN 236
D M R+ VSW +IS Y+ + ++ F+ M N + +L CG
Sbjct: 509 DNMLSRDDVSWTTIISAYAHAEQSNEAMGAFKTMFCEHELPNSPILTILLGVCGSLGASK 568
Query: 237 EGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHC 296
G+ +H ++ + +I+ ALI +Y KC + ++R+FD M +R++ WN +I G+
Sbjct: 569 IGQQIHTVAIKLGMDSELIVANALISMYFKCGCAD-SRRIFDLMEERDIFTWNTIITGYA 627
Query: 297 IHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYK 356
HG E IK++ + + V P+E+TF+G++ AC A L+ EG K+F+ M Y
Sbjct: 628 QHGLGREAIKMYQHMESAGVL-----PNEVTFVGLLNACSHAGLVDEGWKFFKSMSQDYG 682
Query: 357 IKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAM 416
+ P HY CM +L + AE+ + MP + D +++W +LL C+ +
Sbjct: 683 LTPLPEHYACMVDLLGRTGDVQGAEQFIYDMPIEPD-----TVIWSALLGACKIHKNAEI 737
Query: 417 VERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLKE 476
+R A+ ++P + Y L N+Y+ G W +VA VR++MK++ + + PGC +K+
Sbjct: 738 GKRAAEKLFRIEPSNAGNYVMLSNIYSSLGMWGEVAEVRKIMKQQGVIKEPGCSWTQIKD 797
Query: 477 VVEKLKVGHFWRGGMKEEVNKMME 500
+ G ++E V + E
Sbjct: 798 KMHSFVTGDKQHEQIEEIVATLEE 821
Score = 127 bits (318), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 80/297 (26%), Positives = 149/297 (50%), Gaps = 18/297 (6%)
Query: 56 NAVIKAYS-NSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLAL 114
A++ YS ++ V D + F+ MI+ N YT+ ++ + + G ++ +
Sbjct: 263 TAILNVYSRDTSVLDTAIKFFESMIER----NEYTWSTMIAALSHGGRIDAAIAVYE--- 315
Query: 115 KNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHE 174
++ V + +LI G +D AR +F Q+ ++SWN++++G++++G ++ A E
Sbjct: 316 RDPVK-SIACRTALITGLAQCGRIDDARILFEQIPEPIVVSWNALITGYMQNGMVNEAKE 374
Query: 175 LFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSAR 234
LFD MP RN +SW MI+GY+++G +L L +E+ +SG + ++ S+ AC
Sbjct: 375 LFDKMPFRNTISWAGMIAGYAQNGRSEEALGLLQELHRSGMLPSLSSLTSIFFACSNIVA 434
Query: 235 FNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILG 294
G VH V+ + N ALI +Y KC+ +E A++VF M +++V WN+ +
Sbjct: 435 LETGTQVHSLAVKVGCQFNSFACNALITMYGKCRNMEYARQVFSRMVTKDIVSWNSFLAA 494
Query: 295 HCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQM 351
+ +E F + +S D++++ +I A AE E F+ M
Sbjct: 495 LVQNDLLDEARNTFDNM---------LSRDDVSWTTIISAYAHAEQSNEAMGAFKTM 542
Score = 125 bits (315), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 100/386 (25%), Positives = 179/386 (46%), Gaps = 33/386 (8%)
Query: 43 VFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGC 102
VF + N++I AY ++ +PD Y I G M +S +G +
Sbjct: 56 VFDAMPRRDIIAWNSMISAYCHNGMPDAARDLY-DAISGGNMRTGAILLSGYGRLGRV-- 112
Query: 103 VERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSG 162
+E + G+ +N V + N++I+ Y G + AR +F M RD+ SWNS+++G
Sbjct: 113 LEARRVFDGMLERNTVAW-----NAMISCYVQNGDITMARRLFDAMPSRDVSSWNSMLTG 167
Query: 163 HVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTM 222
+ S M A LF+ MPERN+VSW +MISGY + N G + +F +M + G +
Sbjct: 168 YCHSLQMVDARNLFEKMPERNLVSWTVMISGYGRIENHGKAWDIFCKMHREGLLPDQSNF 227
Query: 223 ASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKV-EVAQRVFDSMA 281
AS L+A + S+ ++T + ++++ TA++++YS+ V + A + F+SM
Sbjct: 228 ASALSAVKGLGNLDVLESLRVLALKTGFERDVVIGTAILNVYSRDTSVLDTAIKFFESMI 287
Query: 282 DRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELL 341
+RN W+ MI G+ + I ++ ++A I + C R +
Sbjct: 288 ERNEYTWSTMIAALSHGGRIDAAIAVYERDPVKSIAC------RTALITGLAQCGR---I 338
Query: 342 TEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMW 401
+ R F Q+ + P + + Y + EA+E+ KMP N +I W
Sbjct: 339 DDARILFEQIPE-----PIVVSWNALITGYMQNGMVNEAKELFDKMPFRN------TISW 387
Query: 402 VSLLSLC----RFQGAVAMVERLAKS 423
+++ R + A+ +++ L +S
Sbjct: 388 AGMIAGYAQNGRSEEALGLLQELHRS 413
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 51/207 (24%), Positives = 89/207 (42%), Gaps = 50/207 (24%)
Query: 119 DFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDI 178
+ E+ ++ I G G + AR +F M RD+I+WNS++S + +G AA +L+D
Sbjct: 31 ELEVSGCSARIRDLGRLGRVGEAREVFDAMPRRDIIAWNSMISAYCHNGMPDAARDLYDA 90
Query: 179 MPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEG 238
+ N+ + I++SGY GR R E
Sbjct: 91 ISGGNMRTGAILLSGY-----------------------------------GRLGRVLEA 115
Query: 239 RSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHC-- 296
R V L+ N + A+I Y + + +A+R+FD+M R++ WN+M+ G+C
Sbjct: 116 RRV----FDGMLERNTVAWNAMISCYVQNGDITMARRLFDAMPSRDVSSWNSMLTGYCHS 171
Query: 297 ---------IHGKPEEGIKLFTALVNG 314
PE + +T +++G
Sbjct: 172 LQMVDARNLFEKMPERNLVSWTVMISG 198
Score = 45.8 bits (107), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 37/64 (57%)
Query: 258 TALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVA 317
+A I + +V A+ VFD+M R+++ WN+MI +C +G P+ L+ A+ G +
Sbjct: 38 SARIRDLGRLGRVGEAREVFDAMPRRDIIAWNSMISAYCHNGMPDAARDLYDAISGGNMR 97
Query: 318 GGSI 321
G+I
Sbjct: 98 TGAI 101
Score = 44.3 bits (103), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 43/204 (21%), Positives = 81/204 (39%), Gaps = 28/204 (13%)
Query: 43 VFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGC 102
+F + F N +I Y+ + + + Y M G +PN TFV L +C+ G
Sbjct: 607 IFDLMEERDIFTWNTIITGYAQHGLGREAIKMYQHMESAGVLPNEVTFVGLLNACSHAGL 666
Query: 103 VERG-GMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPR-DLISWNSIV 160
V+ G ++ G+ ++++ G G + A M D + W++++
Sbjct: 667 VDEGWKFFKSMSQDYGLTPLPEHYACMVDLLGRTGDVQGAEQFIYDMPIEPDTVIWSALL 726
Query: 161 SG---HVRSGDMS--AAHELFDIMPERNVVSWNIMISGYSKSG----------------- 198
H ++ ++ AA +LF I P N ++ ++ + YS G
Sbjct: 727 GACKIH-KNAEIGKRAAEKLFRIEPS-NAGNYVMLSNIYSSLGMWGEVAEVRKIMKQQGV 784
Query: 199 --NPGCSLKLFREMMKSGFRGNDK 220
PGCS ++ M S G+ +
Sbjct: 785 IKEPGCSWTQIKDKMHSFVTGDKQ 808
>gi|147854092|emb|CAN83391.1| hypothetical protein VITISV_041405 [Vitis vinifera]
Length = 886
Score = 230 bits (587), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 135/469 (28%), Positives = 235/469 (50%), Gaps = 41/469 (8%)
Query: 6 QIQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSNS 65
+I L+ SG F + F + L+ G + VF+ I N++I YS
Sbjct: 420 EIHMELVRSG-FALDGFVSSALVDMYGKCGCLEMAKEVFEQIQRKNVVSWNSMIAGYSLK 478
Query: 66 CVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVM 125
+ + +M + G P T S+ +C+++ ++ G HG ++N V+ ++ V
Sbjct: 479 GDSKSCIELFRRMDEEGIRPTLTTLSSILMACSRSVNLQLGKFIHGYIIRNRVEADIFVN 538
Query: 126 NSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVV 185
+SLI++Y + G++ +A +F MP+ NVV
Sbjct: 539 SSLIDLY-------------------------------FKCGNIGSAENVFQNMPKTNVV 567
Query: 186 SWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYT 245
SWN+MISGY K G+ +L +F +M K+G + + T SVL AC + A +G+ +H +
Sbjct: 568 SWNVMISGYVKVGSYLEALVIFTDMRKAGVKPDAITFTSVLPACSQLAVLEKGKEIHNFI 627
Query: 246 VRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGI 305
+ + L+ N ++ AL+D+Y+KC V+ A +F+ + +R+ V W +MI + HG+ E +
Sbjct: 628 IESKLEINEVVMGALLDMYAKCGAVDEALHIFNQLPERDFVSWTSMIAAYGSHGQAFEAL 687
Query: 306 KLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYW 365
KLF + PD++TF+ ++ AC A L+ EG YF QMI Y KP HY
Sbjct: 688 KLFEKMQQSDA-----KPDKVTFLAILSACSHAGLVDEGCYYFNQMIAEYGFKPAVEHYS 742
Query: 366 CMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFV 425
C+ +L EA EIL++ P+ +++ S +L S C + + E++ + +
Sbjct: 743 CLIDLLGRVGRLREAYEILQRTPDIREDVGLLS----TLFSACHLHKKLDLGEQIGRLLI 798
Query: 426 DMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDL 474
+ DP D S Y L N+YA +W++V +VR +K+ + + PGC +++
Sbjct: 799 EKDPDDPSTYIILSNMYASVKKWDEVRKVRLKIKELGLKKNPGCSWIEV 847
Score = 174 bits (442), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 110/381 (28%), Positives = 187/381 (49%), Gaps = 47/381 (12%)
Query: 56 NAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALK 115
N VI Y P++ + + +M +GF P+S T ++ SCA+ +ERG H ++
Sbjct: 368 NNVISCYYQDGQPEKALELFEEMKVSGFKPDSVTLTTVISSCARLLDLERGKEIHMELVR 427
Query: 116 NGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHEL 175
+G + V ++L++MYG G ++ A+ +F Q+
Sbjct: 428 SGFALDGFVSSALVDMYGKCGCLEMAKEVFEQIQ-------------------------- 461
Query: 176 FDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARF 235
+NVVSWN MI+GYS G+ ++LFR M + G R T++S+L AC RS
Sbjct: 462 -----RKNVVSWNSMIAGYSLKGDSKSCIELFRRMDEEGIRPTLTTLSSILMACSRSVNL 516
Query: 236 NEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGH 295
G+ +HGY +R ++ +I ++++LIDLY KC + A+ VF +M N+V WN MI G+
Sbjct: 517 QLGKFIHGYIIRNRVEADIFVNSSLIDLYFKCGNIGSAENVFQNMPKTNVVSWNVMISGY 576
Query: 296 CIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFY 355
G E + +FT + V PD ITF V+ AC + +L +G++ +I+
Sbjct: 577 VKVGSYLEALVIFTDMRKAGV-----KPDAITFTSVLPACSQLAVLEKGKEIHNFIIE-S 630
Query: 356 KIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQG--- 412
K++ N + ++YA +EA I ++PE + + W S+++ G
Sbjct: 631 KLEINEVVMGALLDMYAKCGAVDEALHIFNQLPERD------FVSWTSMIAAYGSHGQAF 684
Query: 413 -AVAMVERLAKSFVDMDPQDF 432
A+ + E++ +S D F
Sbjct: 685 EALKLFEKMQQSDAKPDKVTF 705
Score = 148 bits (374), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 99/352 (28%), Positives = 175/352 (49%), Gaps = 39/352 (11%)
Query: 42 LVFKCINNPGTFCV-NAVIKAYSNSCVPDQGVVFYLQMIKNGFM-PNSYTFVSLFGSCAK 99
LVF+ I NP + N ++ A + + + +G+ + +++ ++ P+++T+ S+ +C+
Sbjct: 251 LVFQTIENPLDITLWNGLMAACTKNFIFIEGLEVFHRLLHFPYLKPDAFTYPSVLKACSG 310
Query: 100 TGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSI 159
G V G M H +K+G ++ VM+S + MY C N+F
Sbjct: 311 LGRVGYGKMVHTHVIKSGFAMDVVVMSSAVGMYA-----KC--NVF-------------- 349
Query: 160 VSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGND 219
A +LFD MPER+V SWN +IS Y + G P +L+LF EM SGF+ +
Sbjct: 350 ----------EDAIKLFDEMPERDVASWNNVISCYYQDGQPEKALELFEEMKVSGFKPDS 399
Query: 220 KTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDS 279
T+ +V+++C R G+ +H VR+ + + +AL+D+Y KC +E+A+ VF+
Sbjct: 400 VTLTTVISSCARLLDLERGKEIHMELVRSGFALDGFVSSALVDMYGKCGCLEMAKEVFEQ 459
Query: 280 MADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAE 339
+ +N+V WN+MI G+ + G + I+LF + I P T ++ AC R+
Sbjct: 460 IQRKNVVSWNSMIAGYSLKGDSKSCIELFRRMDE-----EGIRPTLTTLSSILMACSRSV 514
Query: 340 LLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDN 391
L G K+ I +++ + + +LY AE + + MP+ N
Sbjct: 515 NLQLG-KFIHGYIIRNRVEADIFVNSSLIDLYFKCGNIGSAENVFQNMPKTN 565
>gi|242094040|ref|XP_002437510.1| hypothetical protein SORBIDRAFT_10g028370 [Sorghum bicolor]
gi|241915733|gb|EER88877.1| hypothetical protein SORBIDRAFT_10g028370 [Sorghum bicolor]
Length = 653
Score = 230 bits (587), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 139/478 (29%), Positives = 242/478 (50%), Gaps = 20/478 (4%)
Query: 39 YTVLVFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNG------FMPNSYTFVS 92
Y V VF ++ P F A+++ +++ P ++ F+P + F
Sbjct: 95 YAVAVFSSLSPPDPFLAAALLR-FAHLTQPPLETFRVFSGLRRAHGRDLPFLP--FAFSP 151
Query: 93 LFGSCAKTGCVERGGMCHGLALK-NGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPR 151
L S A + H ++L G D V NSLI Y G + AR + +M +
Sbjct: 152 LAKSAAAARSLPAAAGAHAVSLLLGGFDKHRFVENSLIGAYVACGDVGAARKVLDEMVVK 211
Query: 152 DLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMM 211
D+ISW SIV+ + RS DM +A E+F + P +++V+W M++GY+++ P +L+ F +M
Sbjct: 212 DVISWTSIVAAYSRSRDMGSAEEVFALCPVKDMVAWTAMVTGYAQNAMPVKALEAFEQMA 271
Query: 212 KSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVE 271
+G ++ ++ ++AC + + R+ L N+++ + L+D+Y+KC ++
Sbjct: 272 GAGMPIDEVSLTGAISACAQLGAVRRAVWIQEIADRSGLGRNVVVGSGLVDMYAKCGLID 331
Query: 272 VAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGV 331
A RVF+ M ++N+ +++MI+G HG+ + I LF N V + P+ +TFIGV
Sbjct: 332 EACRVFEGMQEKNVYTYSSMIVGLASHGRANDAIALF----NDMVRRADVEPNHVTFIGV 387
Query: 332 ICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDN 391
+ AC A ++ EGR YF QM D Y I P+ HY CM +L A L EA ++++ M
Sbjct: 388 LTACSHAGMVKEGRYYFAQMKDRYGILPSADHYTCMVDLLGRAGLVIEALDLVKSM---- 443
Query: 392 DNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDV 451
+ +W +LL CR G + + A+ ++P+ Y L N A AG+W++V
Sbjct: 444 -TVEPHGGVWGALLGACRIHGNTKVAKVAAQHLFKLEPEGIGNYVLLSNTLASAGEWDEV 502
Query: 452 ARVRELMKKRRMGRMPGCRLVDLKE-VVEKLKVGHFWRGGMKEEVNKMMECRQSRSLA 508
++VR+LM+ R + + P + ++ +V + G M E ++E R LA
Sbjct: 503 SKVRKLMRIRGLKKDPAVSSFEGRDGLVHQFFAGDNTHPWMHEIKKTLLELRARLKLA 560
>gi|449455116|ref|XP_004145299.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Cucumis sativus]
Length = 722
Score = 230 bits (586), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 126/431 (29%), Positives = 226/431 (52%), Gaps = 43/431 (9%)
Query: 56 NAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALK 115
N +I AY+ P + + + M ++G + +T + + S A+ CV+ G H L+
Sbjct: 296 NIMIAAYAREGKPTECLELFKSMARSGIRSDLFTALPVISSIAQLKCVDWGKQTHAHILR 355
Query: 116 NGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHEL 175
NG D ++ V NSLI+MY +D +A ++
Sbjct: 356 NGSDSQVSVHNSLIDMYCECKILD-------------------------------SACKI 384
Query: 176 FDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARF 235
F+ M +++V+SW+ MI GY K+G +L LF +M G + + M ++L A
Sbjct: 385 FNWMTDKSVISWSAMIKGYVKNGQSLTALSLFSKMKSDGIQADFVIMINILPAFVHIGAL 444
Query: 236 NEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDS--MADRNLVCWNAMIL 293
+ +HGY+++ L L+TAL+ Y+KC +E+AQR+F+ + D++L+ WN+MI
Sbjct: 445 ENVKYLHGYSMKLGLTSLPSLNTALLITYAKCGSIEMAQRLFEEEKIDDKDLIMWNSMIS 504
Query: 294 GHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMID 353
H HG + KL+ + + PD++TF+G++ ACV + L+ +G+++F++M +
Sbjct: 505 AHANHGDWSQCFKLYNRM-----KCSNSKPDQVTFLGLLTACVNSGLVEKGKEFFKEMTE 559
Query: 354 FYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGA 413
Y +P+ HY CM NL A L EA E+++ MP D + +W LLS C+
Sbjct: 560 SYGCQPSQEHYACMVNLLGRAGLISEAGELVKNMPIKPD-----ARVWGPLLSACKMHPG 614
Query: 414 VAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVD 473
+ E A+ ++M+P++ Y L N+YA AG+W+ VA++R ++ + + ++PGC ++
Sbjct: 615 SKLAEFAAEKLINMEPRNAGNYILLSNIYAAAGKWDGVAKMRSFLRNKGLKKIPGCSWLE 674
Query: 474 LKEVVEKLKVG 484
+ V + +V
Sbjct: 675 INGHVTEFRVA 685
Score = 112 bits (280), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 80/334 (23%), Positives = 153/334 (45%), Gaps = 49/334 (14%)
Query: 77 QMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFG 136
+MI +P+S+TF +L A ++ + H +A+ + + +L V +++++Y
Sbjct: 216 RMIAEQLVPDSFTFFNLLRFIAGLNSIQLAKIVHCIAIVSKLSGDLLVNTAVLSLYSKLR 275
Query: 137 AMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSK 196
++ AR +LFD MPE++ V WNIMI+ Y++
Sbjct: 276 SLVDAR-------------------------------KLFDKMPEKDRVVWNIMIAAYAR 304
Query: 197 SGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIIL 256
G P L+LF+ M +SG R + T V+++ + + G+ H + +R + +
Sbjct: 305 EGKPTECLELFKSMARSGIRSDLFTALPVISSIAQLKCVDWGKQTHAHILRNGSDSQVSV 364
Query: 257 DTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTV 316
+LID+Y +C+ ++ A ++F+ M D++++ W+AMI G+ +G+ + LF+ +
Sbjct: 365 HNSLIDMYCECKILDSACKIFNWMTDKSVISWSAMIKGYVKNGQSLTALSLFSKM----- 419
Query: 317 AGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMAN----LYA 372
I D + I ++ A V L E KY Y +K + YA
Sbjct: 420 KSDGIQADFVIMINILPAFVHIGAL-ENVKYLHG----YSMKLGLTSLPSLNTALLITYA 474
Query: 373 GAELTEEAEEILRKMPEDNDNMSFESIMWVSLLS 406
E A+ + + D+ ++ IMW S++S
Sbjct: 475 KCGSIEMAQRLFEEEKIDDKDL----IMWNSMIS 504
Score = 92.4 bits (228), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 78/352 (22%), Positives = 148/352 (42%), Gaps = 37/352 (10%)
Query: 1 MKQLLQIQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIK 60
++ L QI A I G F N + L+ A+ G ++++ VF + +P NA+++
Sbjct: 40 IQHLQQIHARFILHG-FHQNPTLSSKLIDCYANLGLLNHSLQVFCSVIDPNLTLFNAILR 98
Query: 61 AYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDF 120
+ ++ ++ Y QM+ P+ T+ + SC+ V G HG +K G D
Sbjct: 99 NLTRYGESERTLLVYQQMVAKSMHPDEETYPFVLRSCSSFSNVGFGRTIHGYLVKLGFDL 158
Query: 121 ELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMP 180
V +L MY + A +F + S +DL W S ++ D
Sbjct: 159 FDVVATALAEMYEECIEFENAHQLFDKRSVKDL-GWPSSLTTEGPQND------------ 205
Query: 181 ERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRS 240
N ++F M+ + T ++L +
Sbjct: 206 ------------------NGEGIFRVFGRMIAEQLVPDSFTFFNLLRFIAGLNSIQLAKI 247
Query: 241 VHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGK 300
VH + + L +++++TA++ LYSK + + A+++FD M +++ V WN MI + GK
Sbjct: 248 VHCIAIVSKLSGDLLVNTAVLSLYSKLRSLVDARKLFDKMPEKDRVVWNIMIAAYAREGK 307
Query: 301 PEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMI 352
P E ++LF ++ A I D T + VI + + + + G++ ++
Sbjct: 308 PTECLELFKSM-----ARSGIRSDLFTALPVISSIAQLKCVDWGKQTHAHIL 354
Score = 43.5 bits (101), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 45/168 (26%), Positives = 73/168 (43%), Gaps = 13/168 (7%)
Query: 239 RSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIH 298
+ +H + N L + LID Y+ + + +VF S+ D NL +NA++ +
Sbjct: 44 QQIHARFILHGFHQNPTLSSKLIDCYANLGLLNHSLQVFCSVIDPNLTLFNAILRNLTRY 103
Query: 299 GKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIK 358
G+ E T LV + S+ PDE T+ V+ +C + GR I Y +K
Sbjct: 104 GESER-----TLLVYQQMVAKSMHPDEETYPFVLRSCSSFSNVGFGRT-----IHGYLVK 153
Query: 359 PNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLS 406
F + +A A AE+ EE E + D S + + W S L+
Sbjct: 154 LGFDLFDVVAT--ALAEMYEECIE-FENAHQLFDKRSVKDLGWPSSLT 198
>gi|357454909|ref|XP_003597735.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|87240430|gb|ABD32288.1| Tetratricopeptide-like helical [Medicago truncatula]
gi|355486783|gb|AES67986.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 620
Score = 230 bits (586), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 130/443 (29%), Positives = 219/443 (49%), Gaps = 44/443 (9%)
Query: 43 VFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGC 102
+F I F N +I+ Y+ + D ++ Y +M+ G P+++T + +C+
Sbjct: 104 LFDKIPKQNLFLWNVLIRGYAWNGPHDNAIILYHKMLDYGLRPDNFTLPFVLKACSALSA 163
Query: 103 VERGGMCHGLALKNGVDFELPVMNSLINMYG-CFGAMDCARNMFVQMSPRDLISWNSIVS 161
+ G H +K+G + +L V +LI+MY C MD R
Sbjct: 164 IGEGRSIHEYVIKSGWERDLFVGAALIDMYAKCGCVMDAGR------------------- 204
Query: 162 GHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKT 221
+FD + R+ V WN M++ Y+++G+P S+ L REM +G R + T
Sbjct: 205 -------------VFDKIVVRDAVLWNSMLAAYAQNGHPDESISLCREMAANGVRPTEAT 251
Query: 222 MASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMA 281
+ +V+++ A GR +HG+ R + N + TALID+Y+KC V+VA +F+ +
Sbjct: 252 LVTVISSSADVACLPYGREIHGFGWRHGFQSNDKVKTALIDMYAKCGSVKVALALFERLR 311
Query: 282 DRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELL 341
++ +V WNA+I G+ +HG + LF + PD ITF+GV+ AC R LL
Sbjct: 312 EKRVVSWNAIITGYAMHGLAVGALDLFDKMRKED------RPDHITFVGVLAACSRGRLL 365
Query: 342 TEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMW 401
EGR + M+ Y I P HY CM +L +EA +++R M D S +W
Sbjct: 366 DEGRALYNLMVRDYGITPTVQHYTCMIDLLGHCGQLDEAYDLIRNMSVKPD-----SGVW 420
Query: 402 VSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKR 461
+LL+ C+ G V + E + ++++P D Y L N+YA +G+WE V ++R++M +
Sbjct: 421 GALLNSCKIHGNVELAELALEKLIELEPDDSGNYVILANMYAQSGKWEGVEKLRQVMIDK 480
Query: 462 RMGRMPGCRLVDLKEVVEKLKVG 484
R+ + C +++K V G
Sbjct: 481 RIKKNIACSWIEVKNKVYAFLAG 503
Score = 123 bits (308), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 71/259 (27%), Positives = 121/259 (46%), Gaps = 36/259 (13%)
Query: 88 YTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQ 147
Y + SL SC + + G H G+ + + L+++Y ++ ARN
Sbjct: 48 YGYTSLLQSCIDSKALNPGKQLHAQFYHLGIAYNQDLATKLVHLYAVSNSLLNARN---- 103
Query: 148 MSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLF 207
LFD +P++N+ WN++I GY+ +G ++ L+
Sbjct: 104 ---------------------------LFDKIPKQNLFLWNVLIRGYAWNGPHDNAIILY 136
Query: 208 REMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKC 267
+M+ G R ++ T+ VL AC + EGRS+H Y +++ + ++ + ALID+Y+KC
Sbjct: 137 HKMLDYGLRPDNFTLPFVLKACSALSAIGEGRSIHEYVIKSGWERDLFVGAALIDMYAKC 196
Query: 268 QKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEIT 327
V A RVFD + R+ V WN+M+ + +G P+E I L + A + P E T
Sbjct: 197 GCVMDAGRVFDKIVVRDAVLWNSMLAAYAQNGHPDESISLCREM-----AANGVRPTEAT 251
Query: 328 FIGVICACVRAELLTEGRK 346
+ VI + L GR+
Sbjct: 252 LVTVISSSADVACLPYGRE 270
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 42/155 (27%), Positives = 69/155 (44%), Gaps = 15/155 (9%)
Query: 224 SVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADR 283
S+L +C S N G+ +H + N L T L+ LY+ + A+ +FD + +
Sbjct: 52 SLLQSCIDSKALNPGKQLHAQFYHLGIAYNQDLATKLVHLYAVSNSLLNARNLFDKIPKQ 111
Query: 284 NLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTE 343
NL WN +I G+ +G + I L+ +++ + PD T V+ AC + E
Sbjct: 112 NLFLWNVLIRGYAWNGPHDNAIILYHKMLD-----YGLRPDNFTLPFVLKACSALSAIGE 166
Query: 344 GRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTE 378
GR I Y IK + +L+ GA L +
Sbjct: 167 GRS-----IHEYVIKSGWER-----DLFVGAALID 191
>gi|414872719|tpg|DAA51276.1| TPA: methyltransferase small domain protein [Zea mays]
Length = 601
Score = 230 bits (586), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 134/466 (28%), Positives = 236/466 (50%), Gaps = 13/466 (2%)
Query: 6 QIQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSNS 65
Q+ AH++ SGL + + +L+K D G + L+F+ T N ++ Y N
Sbjct: 142 QVHAHVVVSGLH-SRVYLRNSLIKMYIDAGDVETAELMFRSALVLDTVSCNIMLSGYVNE 200
Query: 66 CVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALK--NGVDFELP 123
+ + F+ M G + + YT V+L C + G HG+ ++ + D L
Sbjct: 201 GCTLKALWFFRDMASRGIVVDQYTAVALLTCCGRLKNELIGRSVHGVIVRRMDAGDHGLI 260
Query: 124 VMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERN 183
++N+L++MY G M+ A+ +F + +D ISWN++VSG V +G + A F P R+
Sbjct: 261 LVNALLDMYAKCGRMNAAKTIFGETGEKDAISWNTMVSGFVNAGMLDLASRFFSEAPSRD 320
Query: 184 VVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHG 243
++SWN +++GY++ + +KLF +M+ S + T ++++A N +SVHG
Sbjct: 321 LISWNALLAGYARYKSFNEVMKLFHDMVASCVNLDKVTAVTLISAATGKGSLNHAKSVHG 380
Query: 244 YTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEE 303
+ V+ + L +AL+D+Y KC V+ A VF+ D+++ W AMI G +G E
Sbjct: 381 WVVKEFDHQDAFLASALVDMYCKCGNVKTAYYVFEKALDKDVTLWTAMISGLAFNGHGTE 440
Query: 304 GIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAH 363
++LF + VA P+ +T + V+ AC + LL EG K F M Y I+P H
Sbjct: 441 ALELFCKMQTEVVA-----PNGVTLLAVLSACSHSGLLDEGCKIFDAMKQRYSIEPGIEH 495
Query: 364 YWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKS 423
+ CM +L A + +A + R+MP M +W S+L+ + + E +K
Sbjct: 496 FGCMVDLLARSGRLIDALALARRMP-----MRPSRSIWGSILNASLAGQNIEVAEIASKE 550
Query: 424 FVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGC 469
+ +DP + Y L N++A G W +VR++M+++ + ++ G
Sbjct: 551 LLRLDPAEEGGYVLLSNLHAAGGHWNHSDKVRQIMERKGLRKLAGA 596
Score = 97.8 bits (242), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 91/357 (25%), Positives = 149/357 (41%), Gaps = 58/357 (16%)
Query: 7 IQAHLITSGLFFNNSFWTINLLKHSADFGSPDYT---VLVFKCIN-NPGTFCVNAVIKAY 62
I AHL+ GL +F LL ++ SP T L+F+ P + N ++ A
Sbjct: 39 ILAHLLRLGLAME-TFPMSRLLHYAIVVSSPRLTREAELLFQHFTPRPNLYIYNLMLSAA 97
Query: 63 SNSCVP--DQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDF 120
+ Q Y M+ + +P+ TF++L S + + G H + +G+
Sbjct: 98 AARDSSSSTQAAALYRSMLASSVLPDQQTFLALLRSVER---LSAGRQVHAHVVVSGLHS 154
Query: 121 ELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMP 180
+ + NSLI MY G ++ A MF D +S N ++SG+V
Sbjct: 155 RVYLRNSLIKMYIDAGDVETAELMFRSALVLDTVSCNIMLSGYV---------------- 198
Query: 181 ERNVVSWNIMISGYSKSGNPGCSLK---LFREMMKSGFRGNDKTMASVLTACGRSARFNE 237
N GC+LK FR+M G + T ++LT CGR
Sbjct: 199 ------------------NEGCTLKALWFFRDMASRGIVVDQYTAVALLTCCGRLKNELI 240
Query: 238 GRSVHGYTVR--TSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGH 295
GRSVHG VR + +IL AL+D+Y+KC ++ A+ +F +++ + WN M+ G
Sbjct: 241 GRSVHGVIVRRMDAGDHGLILVNALLDMYAKCGRMNAAKTIFGETGEKDAISWNTMVSGF 300
Query: 296 CIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMI 352
G + + F+ + S D I++ ++ R + E K F M+
Sbjct: 301 VNAGMLDLASRFFSE---------APSRDLISWNALLAGYARYKSFNEVMKLFHDMV 348
>gi|147771902|emb|CAN75707.1| hypothetical protein VITISV_031420 [Vitis vinifera]
Length = 708
Score = 230 bits (586), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 161/542 (29%), Positives = 249/542 (45%), Gaps = 85/542 (15%)
Query: 5 LQIQAHLITSGL----FFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIK 60
LQI AH+I SGL F NS T+ K DF P+ T VF + ++I
Sbjct: 138 LQIHAHVIKSGLEFDRFVGNSLLTL-YFKLGTDF--PE-TRKVFDGLFVKDVISWTSMIS 193
Query: 61 AYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDF 120
Y P + + +M+ G PN++T ++ +C++ G ++ G + HG+ L G D
Sbjct: 194 GYVRVGKPMNSLELFWKMLAYGVEPNAFTLSAVIKACSELGDLKLGRIFHGVVLGRGFDS 253
Query: 121 ELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMP 180
+ ++LI+M+G A+D AR +F ++ D I W SI+S R+ A F M
Sbjct: 254 NYVIASALIDMHGRNCALDDARQLFDELLEPDAICWTSIISALTRNDFFDEALRFFYSMQ 313
Query: 181 ER----------------------------------------NVVSWNIMISGYSKSGNP 200
NVV + ++ Y K G+
Sbjct: 314 RDHGMCPDGFTFGTVLTACGNLGRLKQGKEVHAKVITTGFCGNVVVESSLVDMYGKCGSV 373
Query: 201 GCSLKLFREM-MKSG----------------------FRGNDKT----MASVLTACGRSA 233
G S ++F M +K+ FR +K ++L C A
Sbjct: 374 GESQRIFDRMPIKNSVSWSALLGGYCQNGDFKSVIQIFRKMEKVDLYCFGTILRTCAGLA 433
Query: 234 RFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMIL 293
+G+ VH +R ++I+++AL+DLY+KC +E AQ +FD M RNL+ WN+MI
Sbjct: 434 AVRQGKEVHCQYIRKGGWRDVIVESALVDLYAKCGCIEYAQTIFDQMPVRNLITWNSMIG 493
Query: 294 GHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMID 353
G +G+ EE +++F +V I PD I+FIG++ AC L+ EGR+YF M
Sbjct: 494 GFAQNGRGEEALRIFNQMVK-----EGIKPDYISFIGILFACSHRGLVDEGREYFISMTK 548
Query: 354 FYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGA 413
Y IK HY CM +L A L EEAE ++ + + +S +W +LL C
Sbjct: 549 DYGIKVGIEHYSCMVDLLGRAGLLEEAEILI-----ETSDFRDDSSLWAALLGACTTCTN 603
Query: 414 VAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVD 473
+ ER+AK ++++P Y L NVY G+W D R+R LMK R + +MPG ++
Sbjct: 604 YEIAERIAKRVMELEPDYHLSYVLLANVYKAVGRWNDALRIRRLMKDRGVNKMPGKSWIE 663
Query: 474 LK 475
K
Sbjct: 664 TK 665
Score = 103 bits (257), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 77/317 (24%), Positives = 139/317 (43%), Gaps = 43/317 (13%)
Query: 90 FVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGA-MDCARNMFVQM 148
+ SL +C K G H +K+G++F+ V NSL+ +Y G R +F +
Sbjct: 121 YASLLQTCTKVLAFNHGLQIHAHVIKSGLEFDRFVGNSLLTLYFKLGTDFPETRKVFDGL 180
Query: 149 SPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFR 208
+D+ISW S++SG+VR G P SL+LF
Sbjct: 181 FVKDVISWTSMISGYVR-------------------------------VGKPMNSLELFW 209
Query: 209 EMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQ 268
+M+ G N T+++V+ AC GR HG + N ++ +ALID++ +
Sbjct: 210 KMLAYGVEPNAFTLSAVIKACSELGDLKLGRIFHGVVLGRGFDSNYVIASALIDMHGRNC 269
Query: 269 KVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITF 328
++ A+++FD + + + +CW ++I + +E ++ F ++ + PD TF
Sbjct: 270 ALDDARQLFDELLEPDAICWTSIISALTRNDFFDEALRFFYSMQRDH----GMCPDGFTF 325
Query: 329 IGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMP 388
V+ AC L +G++ ++I N + ++Y E++ I +MP
Sbjct: 326 GTVLTACGNLGRLKQGKEVHAKVIT-TGFCGNVVVESSLVDMYGKCGSVGESQRIFDRMP 384
Query: 389 EDNDNMSFESIMWVSLL 405
N S+ W +LL
Sbjct: 385 IKN------SVSWSALL 395
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 47/212 (22%), Positives = 95/212 (44%), Gaps = 13/212 (6%)
Query: 196 KSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNII 255
KSG +L+L + + AS+L C + FN G +H + +++ L+ +
Sbjct: 95 KSGELSGALQLLKSIDPGEISAKPVLYASLLQTCTKVLAFNHGLQIHAHVIKSGLEFDRF 154
Query: 256 LDTALIDLYSKC-QKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNG 314
+ +L+ LY K ++VFD + ++++ W +MI G+ GKP ++LF ++
Sbjct: 155 VGNSLLTLYFKLGTDFPETRKVFDGLFVKDVISWTSMISGYVRVGKPMNSLELFWKML-- 212
Query: 315 TVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGA 374
+ P+ T VI AC L GR F ++ N+ + +++
Sbjct: 213 ---AYGVEPNAFTLSAVIKACSELGDLKLGR-IFHGVVLGRGFDSNYVIASALIDMHGRN 268
Query: 375 ELTEEAEEILRKMPEDNDNMSFESIMWVSLLS 406
++A ++ ++ E ++I W S++S
Sbjct: 269 CALDDARQLFDELLEP------DAICWTSIIS 294
>gi|297800868|ref|XP_002868318.1| hypothetical protein ARALYDRAFT_330113 [Arabidopsis lyrata subsp.
lyrata]
gi|297314154|gb|EFH44577.1| hypothetical protein ARALYDRAFT_330113 [Arabidopsis lyrata subsp.
lyrata]
Length = 1057
Score = 230 bits (586), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 129/418 (30%), Positives = 219/418 (52%), Gaps = 13/418 (3%)
Query: 85 PNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNM 144
P+ + F +L +CA G ++ G H + + + V +SL++MY +DCA+ +
Sbjct: 40 PDDFVFSALVKACANLGSIKLGKQVHCHFIVSEYSNDDVVKSSLVDMYAKCRLLDCAKAV 99
Query: 145 FVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSL 204
F + ++ ISW ++VSG+ +SG A ELF +P +N+ SW +ISG+ +SG +
Sbjct: 100 FDSIRVKNTISWTAMVSGYAKSGRKEEALELFRRLPVKNLYSWTALISGFVQSGKGLEAF 159
Query: 205 KLFREMMKSGFRGNDK-TMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDL 263
+F EM + D ++S++ AC A GR VHG + + + ALID+
Sbjct: 160 SVFTEMRRERVDILDPLVLSSIVGACANLAASIAGRQVHGLVIALGFDSCVFISNALIDM 219
Query: 264 YSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISP 323
Y+KC V A+ +F M R++V W ++I+G HG+ E+ + L+ +V+ V P
Sbjct: 220 YAKCSDVIAAKDIFSRMRHRDVVSWTSLIVGMAQHGQAEKALALYDEMVSHGV-----KP 274
Query: 324 DEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEI 383
+E+TF+G+I AC + +GR+ F+ M Y I+P+ HY C+ +L + L +EAE +
Sbjct: 275 NEVTFVGLIYACSHVGFVAKGRELFQSMTKDYGIRPSLQHYTCLLDLLGRSGLLDEAENL 334
Query: 384 LRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFV-DMDPQDFSRYQFLLNVY 442
+ MP D + W +LLS C+ QG M R+A V P+D S Y L N+Y
Sbjct: 335 IHTMPFPPDEPT-----WAALLSACKRQGQGQMGVRIADHLVSSFKPKDPSTYILLSNIY 389
Query: 443 AVAGQWEDVARVRELMKKRRMGRMPGCRLVDLKEVVEKLKVGHFWRGGMKEEVNKMME 500
A A W V+ R + + + PG V++++ E G +KE++ ++++
Sbjct: 390 ASASLWGKVSEARRKLGDMEVRKDPGYSSVEVRKETEVFYAGET-SHALKEDIFRLLK 446
Score = 75.1 bits (183), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 41/153 (26%), Positives = 82/153 (53%), Gaps = 12/153 (7%)
Query: 179 MPERNVVSWNIMISGYSKSGNPGCSL-KLFREMMKSGFRGNDKTMASVLTACGRSARFNE 237
MP R+ ++W +++ +++ G +L SG R +D ++++ AC
Sbjct: 1 MPHRDHIAWASVLTALNQANLSGKTLWVFSSVGSSSGLRPDDFVFSALVKACANLGSIKL 60
Query: 238 GRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCI 297
G+ VH + + + + ++ ++L+D+Y+KC+ ++ A+ VFDS+ +N + W AM+ G+
Sbjct: 61 GKQVHCHFIVSEYSNDDVVKSSLVDMYAKCRLLDCAKAVFDSIRVKNTISWTAMVSGYAK 120
Query: 298 HGKPEEGIKLF-----------TALVNGTVAGG 319
G+ EE ++LF TAL++G V G
Sbjct: 121 SGRKEEALELFRRLPVKNLYSWTALISGFVQSG 153
Score = 48.5 bits (114), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 49/101 (48%), Gaps = 2/101 (1%)
Query: 69 DQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERG-GMCHGLALKNGVDFELPVMNS 127
++ + Y +M+ +G PN TFV L +C+ G V +G + + G+ L
Sbjct: 258 EKALALYDEMVSHGVKPNEVTFVGLIYACSHVGFVAKGRELFQSMTKDYGIRPSLQHYTC 317
Query: 128 LINMYGCFGAMDCARNMFVQMS-PRDLISWNSIVSGHVRSG 167
L+++ G G +D A N+ M P D +W +++S R G
Sbjct: 318 LLDLLGRSGLLDEAENLIHTMPFPPDEPTWAALLSACKRQG 358
>gi|297847366|ref|XP_002891564.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297337406|gb|EFH67823.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 596
Score = 230 bits (586), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 139/472 (29%), Positives = 234/472 (49%), Gaps = 43/472 (9%)
Query: 5 LQIQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSN 64
Q AH++ G F ++ F +L+ ++ G ++ VF + A+I +
Sbjct: 123 FQFHAHILKFG-FDSDLFVRNSLISGYSNCGLFEFGSRVFDGTEDKDVVSWTAMIDGFVR 181
Query: 65 SCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNG-VDFELP 123
+ + + ++++M ++G N T VS+ + K V G HG L+ G V ++
Sbjct: 182 NDSSLEAMTYFVEMKRSGVAANEMTVVSVLKATRKAEDVRFGRSIHGFYLEAGRVRCDVF 241
Query: 124 VMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERN 183
+ +SL++MYG G D A ++FD MP RN
Sbjct: 242 IGSSLVDMYGKCGCYD-------------------------------DAQKVFDEMPSRN 270
Query: 184 VVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHG 243
VV+W +I+GY + + +F EM+KS N+KT++SVL+AC + GR VH
Sbjct: 271 VVTWTALIAGYVQGRCFEKGMFVFEEMLKSDVAPNEKTLSSVLSACAHVGALHRGRRVHC 330
Query: 244 YTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEE 303
Y ++ S++ N + T LID Y+KC +E A VF+ + ++N+ W AMI G HG
Sbjct: 331 YVIKNSIEINTTVGTTLIDFYAKCGCLEEAILVFERLREKNVYTWTAMINGFAAHGYAIG 390
Query: 304 GIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAH 363
+ LF +++ V SP+E+TFI V+ AC L+ EGR+ F M + + ++P H
Sbjct: 391 AVDLFHTMLSSHV-----SPNEVTFIVVLSACAHGGLVEEGRRLFLSMKERFNLEPKADH 445
Query: 364 YWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKS 423
Y CM +L+ L EEA+ ++ +MP + N +W +L C + + A
Sbjct: 446 YACMVDLFGRKGLLEEAKALIERMPMEPTNA-----VWGALFGSCLIHKDYELGKYAASR 500
Query: 424 FVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLK 475
+ + P RY L N+Y+ + W+DVARVR+ MK +++ + PGC +++K
Sbjct: 501 VIKLQPSHSGRYTLLANLYSESQNWDDVARVRKQMKDQQVVKSPGCSWIEVK 552
Score = 123 bits (309), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 101/390 (25%), Positives = 170/390 (43%), Gaps = 42/390 (10%)
Query: 6 QIQAHLITSGLFFNN-SFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSN 64
QI ++TS +F+ + LL+ Y + I P ++++ +S
Sbjct: 20 QIHCLVLTSPIFYTRRDLFLSRLLRRCTAATQFRYARRLLCQIQTPSIQLWDSLVGHFSG 79
Query: 65 SCVPDQGVVF--YLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFEL 122
++ + F Y QM +NG +P+ +TF L + K H LK G D +L
Sbjct: 80 RVTLNRRLSFLSYRQMRRNGVVPSRHTFPPLLKAVFKLRDANPFQF-HAHILKFGFDSDL 138
Query: 123 PVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPER 182
V NSLI+ Y G + +F +D++SW +++ G VR+ A
Sbjct: 139 FVRNSLISGYSNCGLFEFGSRVFDGTEDKDVVSWTAMIDGFVRNDSSLEA---------- 188
Query: 183 NVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVH 242
+ F EM +SG N+ T+ SVL A ++ GRS+H
Sbjct: 189 ---------------------MTYFVEMKRSGVAANEMTVVSVLKATRKAEDVRFGRSIH 227
Query: 243 GYTVRTS-LKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKP 301
G+ + ++ ++ + ++L+D+Y KC + AQ+VFD M RN+V W A+I G+
Sbjct: 228 GFYLEAGRVRCDVFIGSSLVDMYGKCGCYDDAQKVFDEMPSRNVVTWTALIAGYVQGRCF 287
Query: 302 EEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNF 361
E+G+ +F ++ VA P+E T V+ AC L GR+ +I I+ N
Sbjct: 288 EKGMFVFEEMLKSDVA-----PNEKTLSSVLSACAHVGALHRGRRVHCYVIK-NSIEINT 341
Query: 362 AHYWCMANLYAGAELTEEAEEILRKMPEDN 391
+ + YA EEA + ++ E N
Sbjct: 342 TVGTTLIDFYAKCGCLEEAILVFERLREKN 371
Score = 63.5 bits (153), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 48/222 (21%), Positives = 99/222 (44%), Gaps = 14/222 (6%)
Query: 187 WNIMISGYSK--SGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGY 244
W+ ++ +S + N S +R+M ++G + T +L A + N + H +
Sbjct: 70 WDSLVGHFSGRVTLNRRLSFLSYRQMRRNGVVPSRHTFPPLLKAVFKLRDANPFQ-FHAH 128
Query: 245 TVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEG 304
++ ++ + +LI YS C E RVFD D+++V W AMI G + E
Sbjct: 129 ILKFGFDSDLFVRNSLISGYSNCGLFEFGSRVFDGTEDKDVVSWTAMIDGFVRNDSSLEA 188
Query: 305 IKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHY 364
+ F + VA +E+T + V+ A +AE + GR ++ +++ +
Sbjct: 189 MTYFVEMKRSGVAA-----NEMTVVSVLKATRKAEDVRFGRSIHGFYLEAGRVRCDVFIG 243
Query: 365 WCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLS 406
+ ++Y ++A+++ +MP N + W +L++
Sbjct: 244 SSLVDMYGKCGCYDDAQKVFDEMPSRN------VVTWTALIA 279
>gi|90657651|gb|ABD96949.1| hypothetical protein [Cleome spinosa]
Length = 639
Score = 230 bits (586), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 145/447 (32%), Positives = 234/447 (52%), Gaps = 17/447 (3%)
Query: 43 VFKCINNPGTFCVNAVIKAY-SNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTG 101
VF I N +I +Y + D VF ++ + T VS +C+
Sbjct: 171 VFDEIPERDVVSWNVLISSYVGHRKFEDAIAVFRRMRRESNLKADEATVVSTLSACSVLR 230
Query: 102 CVERGGMCHGLALKNGVDFEL----PVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWN 157
E G H VD EL + N+L++MY G +D AR +F +M +++I W
Sbjct: 231 NQEVGEEIH-----RYVDAELEMTTKIGNALLDMYCKCGCVDKARAIFDEMGNKNVICWT 285
Query: 158 SIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRG 217
S+VSG+ +G + A ELF+ P R++V W MI+GY + +LKLFR+M R
Sbjct: 286 SMVSGYASNGSLDEARELFERSPVRDIVLWTAMINGYVQFNLFDEALKLFRKMQIQRLRP 345
Query: 218 NDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVF 277
++ + ++L C ++ +G+ +HGY S+ + ++ TAL+D+Y+KC VE A VF
Sbjct: 346 DNFILVTLLKGCAQTGALEQGKWLHGYIHENSITLDRVVGTALVDVYAKCGCVEKALEVF 405
Query: 278 DSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVR 337
M +R+ W ++I G ++G + + F+ + PD+ITFIGV+ AC
Sbjct: 406 YEMKERDTASWTSVIYGLAVNGMTSKALDFFSQMEE-----AGFRPDDITFIGVLTACNH 460
Query: 338 AELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFE 397
L+ EGR+YF M YKI+P HY C+ +L A L +EAE +L +P ++ ++
Sbjct: 461 GGLVEEGRRYFDSMTKTYKIQPKSEHYSCLIDLLCRAGLLDEAELLLEMIPIESSDIVVP 520
Query: 398 SIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVREL 457
++ SLLS CR G + M ER+ + ++ +D S + L +VYA A +WEDV VR
Sbjct: 521 --LYCSLLSACRNYGNLKMSERVGRRLERVEVKDSSVHTLLASVYASANRWEDVTTVRRK 578
Query: 458 MKKRRMGRMPGCRLVDLKEVVEKLKVG 484
MK+ + + PGC +++ V+ + VG
Sbjct: 579 MKELGIRKFPGCSSIEVNGVLHEFMVG 605
Score = 143 bits (361), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 112/429 (26%), Positives = 189/429 (44%), Gaps = 64/429 (14%)
Query: 1 MKQLLQIQAHLITSGLFFN-NSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVI 59
M L QI A + GL N ++ I L GS Y V + +P N +I
Sbjct: 29 MAHLTQIHAKIFRVGLQDNMDTLTKIVLFCTDPSRGSIRYAERVLGFVQSPCLVMYNLMI 88
Query: 60 KAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVD 119
KA + + +V + ++ K G P+++T +F + G V G HG +K+G
Sbjct: 89 KAVAKDENFRKVLVLFSELRKQGLNPDNFTLPPVFKAMGCLGKVVEGEKVHGYVVKSG-- 146
Query: 120 FELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIM 179
F+ V NS++ MYG G M+ A+ ++FD +
Sbjct: 147 FDACVCNSVMGMYGALGKMEVAK-------------------------------KVFDEI 175
Query: 180 PERNVVSWNIMISGYSKSGNPGCSLKLFREMMK-SGFRGNDKTMASVLTACGRSARFNEG 238
PER+VVSWN++IS Y ++ +FR M + S + ++ T+ S L+AC G
Sbjct: 176 PERDVVSWNVLISSYVGHRKFEDAIAVFRRMRRESNLKADEATVVSTLSACSVLRNQEVG 235
Query: 239 RSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIH 298
+H Y V L+ + AL+D+Y KC V+ A+ +FD M ++N++CW +M+ G+ +
Sbjct: 236 EEIHRY-VDAELEMTTKIGNALLDMYCKCGCVDKARAIFDEMGNKNVICWTSMVSGYASN 294
Query: 299 GKPEEGIKLF-----------TALVNGTVAGG---------------SISPDEITFIGVI 332
G +E +LF TA++NG V + PD + ++
Sbjct: 295 GSLDEARELFERSPVRDIVLWTAMINGYVQFNLFDEALKLFRKMQIQRLRPDNFILVTLL 354
Query: 333 CACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDND 392
C + L +G K+ I I + + ++YA E+A E+ +M E D
Sbjct: 355 KGCAQTGALEQG-KWLHGYIHENSITLDRVVGTALVDVYAKCGCVEKALEVFYEMKE-RD 412
Query: 393 NMSFESIMW 401
S+ S+++
Sbjct: 413 TASWTSVIY 421
Score = 82.0 bits (201), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 67/298 (22%), Positives = 132/298 (44%), Gaps = 19/298 (6%)
Query: 167 GDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVL 226
G + A + + +V +N+MI +K N L LF E+ K G ++ T+ V
Sbjct: 64 GSIRYAERVLGFVQSPCLVMYNLMIKAVAKDENFRKVLVLFSELRKQGLNPDNFTLPPVF 123
Query: 227 TACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLV 286
A G + EG VHGY V++ + +++ +Y K+EVA++VFD + +R++V
Sbjct: 124 KAMGCLGKVVEGEKVHGYVVKSGFDACVC--NSVMGMYGALGKMEVAKKVFDEIPERDVV 181
Query: 287 CWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRK 346
WN +I + H K E+ I +F + + ++ DE T + + AC G +
Sbjct: 182 SWNVLISSYVGHRKFEDAIAVFRRMRRES----NLKADEATVVSTLSACSVLRNQEVGEE 237
Query: 347 YFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLS 406
R + ++ + + ++Y ++A I +M N I W S++S
Sbjct: 238 IHRYVDAELEMTTKIGN--ALLDMYCKCGCVDKARAIFDEMGNKN------VICWTSMVS 289
Query: 407 LCRFQGAVAMVERLAKSFVDMDP-QDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRM 463
G++ A+ + P +D + ++N Y +++ ++ M+ +R+
Sbjct: 290 GYASNGSLDE----ARELFERSPVRDIVLWTAMINGYVQFNLFDEALKLFRKMQIQRL 343
>gi|449461407|ref|XP_004148433.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g33170-like [Cucumis sativus]
Length = 749
Score = 230 bits (586), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 130/477 (27%), Positives = 245/477 (51%), Gaps = 31/477 (6%)
Query: 6 QIQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSNS 65
Q+ A+LI + F+ S +L + F ++ + FK I +VI + ++
Sbjct: 180 QVHAYLIKYHIDFDTSIGN-SLSSFYSKFRRLEFAIKAFKIIKEKDVISWTSVISSCCDN 238
Query: 66 CVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVM 125
+ + F++ M+ +G PN YT S+ +C ++ G H L++K G + +
Sbjct: 239 GQAARSLSFFMDMLSDGMKPNEYTLTSVLSACCVMLTLDLGAQIHSLSIKLGYGSSILIK 298
Query: 126 NSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVV 185
NS++ +Y G + A+ +F M +L++WN++++GH + D++ E +V
Sbjct: 299 NSIMYLYLKCGWLIEAQKLFEGMETLNLVTWNAMIAGHAKMMDLA----------EDDVA 348
Query: 186 SWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYT 245
+ KSG+ +L +F+++ +SG + + T +SVL+ C +G +HG
Sbjct: 349 A--------HKSGST--ALAMFQKLYRSGMKPDLFTFSSVLSVCSNLVALEQGEQIHGQI 398
Query: 246 VRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGI 305
+++ + ++++ TAL+ +Y+KC ++ A + F M R ++ W +MI G HG ++ +
Sbjct: 399 IKSGVLADVVVGTALVSMYNKCGSIDKASKAFLEMPSRTMISWTSMITGFARHGLSQQAL 458
Query: 306 KLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYW 365
+LF + + G I P+++TF+GV+ AC A L E YF M Y IKP H+
Sbjct: 459 QLFEDM---RLVG--IKPNQVTFVGVLSACSHAGLADEALYYFELMQKQYNIKPVMDHFA 513
Query: 366 CMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFV 425
C+ ++Y EEA +++ KM N +W L++ CR G + A+ +
Sbjct: 514 CLIDMYLRLGRVEEAFDVVHKM-----NFEPNETIWSMLIAGCRSHGKSDLGFYAAEQLL 568
Query: 426 DMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLKEVVEKLK 482
+ P+D Y LLN++ AG+W+DV++VR+LMK+ ++G++ + +KE V K
Sbjct: 569 KLKPKDVETYVSLLNMHISAGRWKDVSKVRKLMKEEKVGKLKDWSWISIKEKVYSFK 625
Score = 119 bits (298), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 105/470 (22%), Positives = 193/470 (41%), Gaps = 62/470 (13%)
Query: 7 IQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSNSC 66
I H++ +G F + F L+ + G + VF + ++ Y +
Sbjct: 80 IHGHIVKTG-FHEDLFVMTFLVNVYSKCGVMESAHKVFDNLPRRNVNAWTTLLTGYVQNS 138
Query: 67 VPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMN 126
P + +++M++ G P++YT + +C+ +E G H +K +DF+ + N
Sbjct: 139 HPLLALQLFIKMLEAGAYPSNYTLGIVLNACSSLQSIEFGKQVHAYLIKYHIDFDTSIGN 198
Query: 127 SLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVS 186
SL + Y F ++ A F + +D+ISW S+
Sbjct: 199 SLSSFYSKFRRLEFAIKAFKIIKEKDVISWTSV--------------------------- 231
Query: 187 WNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTV 246
IS +G SL F +M+ G + N+ T+ SVL+AC + G +H ++
Sbjct: 232 ----ISSCCDNGQAARSLSFFMDMLSDGMKPNEYTLTSVLSACCVMLTLDLGAQIHSLSI 287
Query: 247 RTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGH----------- 295
+ +I++ +++ LY KC + AQ++F+ M NLV WNAMI GH
Sbjct: 288 KLGYGSSILIKNSIMYLYLKCGWLIEAQKLFEGMETLNLVTWNAMIAGHAKMMDLAEDDV 347
Query: 296 CIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFY 355
H + +F L + PD TF V+ C L +G + Q+I
Sbjct: 348 AAHKSGSTALAMFQKLYR-----SGMKPDLFTFSSVLSVCSNLVALEQGEQIHGQIIK-S 401
Query: 356 KIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLS-LCRF---Q 411
+ + + ++Y ++A + +MP S I W S+++ R Q
Sbjct: 402 GVLADVVVGTALVSMYNKCGSIDKASKAFLEMP------SRTMISWTSMITGFARHGLSQ 455
Query: 412 GAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKR 461
A+ + E + V + P + + +L+ + AG ++ ELM+K+
Sbjct: 456 QALQLFEDM--RLVGIKPNQVT-FVGVLSACSHAGLADEALYYFELMQKQ 502
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 62/252 (24%), Positives = 117/252 (46%), Gaps = 37/252 (14%)
Query: 84 MPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARN 143
+ +SY F L C M HG +K G +L VM L+N+Y
Sbjct: 56 IESSYYF-PLLQECIDRNLATEARMIHGHIVKTGFHEDLFVMTFLVNVYS---------- 104
Query: 144 MFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCS 203
+ G M +AH++FD +P RNV +W +++GY ++ +P +
Sbjct: 105 ---------------------KCGVMESAHKVFDNLPRRNVNAWTTLLTGYVQNSHPLLA 143
Query: 204 LKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDL 263
L+LF +M+++G ++ T+ VL AC G+ VH Y ++ + + + +L
Sbjct: 144 LQLFIKMLEAGAYPSNYTLGIVLNACSSLQSIEFGKQVHAYLIKYHIDFDTSIGNSLSSF 203
Query: 264 YSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISP 323
YSK +++E A + F + +++++ W ++I C +G+ + F +++ + P
Sbjct: 204 YSKFRRLEFAIKAFKIIKEKDVISWTSVISSCCDNGQAARSLSFFMDMLS-----DGMKP 258
Query: 324 DEITFIGVICAC 335
+E T V+ AC
Sbjct: 259 NEYTLTSVLSAC 270
Score = 68.2 bits (165), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 56/219 (25%), Positives = 98/219 (44%), Gaps = 15/219 (6%)
Query: 209 EMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQ 268
E K G R +L C E R +HG+ V+T ++ + T L+++YSKC
Sbjct: 48 EEPKLGTRIESSYYFPLLQECIDRNLATEARMIHGHIVKTGFHEDLFVMTFLVNVYSKCG 107
Query: 269 KVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITF 328
+E A +VFD++ RN+ W ++ G+ + P ++LF ++ AG P T
Sbjct: 108 VMESAHKVFDNLPRRNVNAWTTLLTGYVQNSHPLLALQLFIKMLE---AGA--YPSNYTL 162
Query: 329 IGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMP 388
V+ AC + + G++ +I Y I + + +++ Y+ E A + + +
Sbjct: 163 GIVLNACSSLQSIEFGKQVHAYLIK-YHIDFDTSIGNSLSSFYSKFRRLEFAIKAFKIIK 221
Query: 389 EDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDM 427
E + I W S++S C G A R F+DM
Sbjct: 222 EK------DVISWTSVISSCCDNGQAA---RSLSFFMDM 251
>gi|356567012|ref|XP_003551717.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g44880-like [Glycine max]
Length = 599
Score = 230 bits (586), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 137/453 (30%), Positives = 225/453 (49%), Gaps = 38/453 (8%)
Query: 49 NPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSL---------FGSCAK 99
P + A++K + +G + + ++KNG + Y +L GS K
Sbjct: 122 TPDGYTFTALVKGCATRVATGEGTLLHGMVLKNGVCFDLYVATALVDMYVKFGVLGSARK 181
Query: 100 T-----------------GCVERGGMCHGLALKNGV-DFELPVMNSLINMYGCFGAMDCA 141
G G M L + + D ++ N++I+ Y G + A
Sbjct: 182 VFDEMSVRSKVSWTAVIVGYARCGDMSEARRLFDEMEDRDIVAFNAMIDGYVKMGCVGLA 241
Query: 142 RNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPG 201
R +F +M R+++SW S+VSG+ +GD+ A +FD+MPE+NV +WN MI GY ++
Sbjct: 242 RELFNEMRERNVVSWTSMVSGYCGNGDVENAKLMFDLMPEKNVFTWNAMIGGYCQNRRSH 301
Query: 202 CSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALI 261
+L+LFREM + N+ T+ VL A + GR +H + +R L + + TALI
Sbjct: 302 DALELFREMQTASVEPNEVTVVCVLPAVADLGALDLGRWIHRFALRKKLDRSARIGTALI 361
Query: 262 DLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSI 321
D+Y+KC ++ A+ F+ M +R WNA+I G ++G +E +++F ++
Sbjct: 362 DMYAKCGEITKAKLAFEGMTERETASWNALINGFAVNGCAKEALEVFARMIE-----EGF 416
Query: 322 SPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAE 381
P+E+T IGV+ AC L+ EGR++F M + + I P HY CM +L A +EAE
Sbjct: 417 GPNEVTMIGVLSACNHCGLVEEGRRWFNAM-ERFGIAPQVEHYGCMVDLLGRAGCLDEAE 475
Query: 382 EILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNV 441
+++ MP D + I+ S L C + V ER+ K V MD Y L N+
Sbjct: 476 NLIQTMPYDAN-----GIILSSFLFACGYFNDVLRAERVLKEVVKMDEDVAGNYVMLRNL 530
Query: 442 YAVAGQWEDVARVRELMKKRRMGRMPGCRLVDL 474
YA +W DV V+++MKKR + C ++++
Sbjct: 531 YATRQRWTDVEDVKQMMKKRGTSKEVACSVIEI 563
>gi|297597850|ref|NP_001044616.2| Os01g0815900 [Oryza sativa Japonica Group]
gi|56785064|dbj|BAD82703.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|255673814|dbj|BAF06530.2| Os01g0815900 [Oryza sativa Japonica Group]
Length = 566
Score = 230 bits (586), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 127/469 (27%), Positives = 248/469 (52%), Gaps = 13/469 (2%)
Query: 6 QIQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSNS 65
Q+ H+ GL ++ F + +L+ A G+ Y VF + N++I YS
Sbjct: 108 QMHNHITKLGLL-SDIFVSNSLIHLYAACGNLCYARSVFDEMVVKDVVSWNSLICGYSQ- 165
Query: 66 CVPDQGVVFYLQMIKN-GFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPV 124
C + ++ ++++N G + T + + +C + G ++ ++ +
Sbjct: 166 CNRFKDILALFKLMQNEGVKADKVTMIKVVSACTRLGDYSMADYMVRYIEDYCIEVDVYL 225
Query: 125 MNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNV 184
N+L++ +G G + A +F M R++++ N++++ + + D+ +A ++FD +P++++
Sbjct: 226 GNTLVDYFGRRGQLQSAEKVFFNMKVRNIVTMNAMIAAYAKGQDIVSARKIFDQIPKKDL 285
Query: 185 VSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGY 244
+SW+ MISGYS++ + +L++FR+M ++ + + +ASV+++C + G+ VH Y
Sbjct: 286 ISWSSMISGYSQANHFSDALEIFRQMQRAKVKPDAIVIASVVSSCAHLGALDLGKWVHEY 345
Query: 245 TVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEG 304
R ++K + I++ +LID+Y KC + A +VF M +++ + WN++I+G +G +E
Sbjct: 346 VRRNNIKADTIMENSLIDMYMKCGSAKEALQVFKEMKEKDTLSWNSIIIGLANNGFEKES 405
Query: 305 IKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHY 364
+ LF A++ P+ +TF+GV+ AC A+L+ EG +F M Y ++P HY
Sbjct: 406 LNLFQAMLT-----EGFRPNGVTFLGVLIACANAKLVEEGLDHFESMKRLYSLEPQMKHY 460
Query: 365 WCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSF 424
C+ +L A E+A + +MP D D ++W LL C G VA+ E + K
Sbjct: 461 GCVVDLLGRAGQLEKALRFITEMPIDPD-----PVVWRILLGSCNTHGDVAIAEIVTKKL 515
Query: 425 VDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVD 473
+++P + Y L N YA A +W + VR+ M + + PGC V+
Sbjct: 516 NELEPSNSGNYTLLSNAYASAHRWSEAMNVRQCMADTDVRKSPGCSAVE 564
Score = 128 bits (322), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 98/407 (24%), Positives = 188/407 (46%), Gaps = 21/407 (5%)
Query: 1 MKQLLQIQAHLITSGLFFNNSFWTINLLKHSADFGSPD--YTVLVFKCINNPGTFCVNAV 58
M+ + ++ A+ I SGL+ N + ++ + S PD + VF I P TF N +
Sbjct: 1 MEAIKRLHAYYIVSGLY--NCHYAMSKVLRSYAILQPDLVFAHKVFDQIEAPTTFLWNIL 58
Query: 59 IKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGV 118
I+ + S P + FY + G +P++ TF + +CA+ + G H K G+
Sbjct: 59 IRGLAQSDAPADAIAFYKKAQGGGMVPDNLTFPFILKACARINALNEGEQMHNHITKLGL 118
Query: 119 DFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDI 178
++ V NSLI++Y G + AR++F +M +D++SWNS++ G+ + LF +
Sbjct: 119 LSDIFVSNSLIHLYAACGNLCYARSVFDEMVVKDVVSWNSLICGYSQCNRFKDILALFKL 178
Query: 179 MPERNV----VSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSAR 234
M V V+ ++S ++ G+ + + R + + +++ GR +
Sbjct: 179 MQNEGVKADKVTMIKVVSACTRLGDYSMADYMVRYIEDYCIEVDVYLGNTLVDYFGRRGQ 238
Query: 235 FNEGRSV-HGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMIL 293
V VR NI+ A+I Y+K Q + A+++FD + ++L+ W++MI
Sbjct: 239 LQSAEKVFFNMKVR-----NIVTMNAMIAAYAKGQDIVSARKIFDQIPKKDLISWSSMIS 293
Query: 294 GHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMID 353
G+ + +++F + V PD I V+ +C L G K+ + +
Sbjct: 294 GYSQANHFSDALEIFRQMQRAKV-----KPDAIVIASVVSSCAHLGALDLG-KWVHEYVR 347
Query: 354 FYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIM 400
IK + + ++Y +EA ++ ++M E D +S+ SI+
Sbjct: 348 RNNIKADTIMENSLIDMYMKCGSAKEALQVFKEMKE-KDTLSWNSII 393
Score = 97.8 bits (242), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 68/296 (22%), Positives = 137/296 (46%), Gaps = 15/296 (5%)
Query: 168 DMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLT 227
D+ AH++FD + WNI+I G ++S P ++ +++ G ++ T +L
Sbjct: 36 DLVFAHKVFDQIEAPTTFLWNILIRGLAQSDAPADAIAFYKKAQGGGMVPDNLTFPFILK 95
Query: 228 ACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVC 287
AC R NEG +H + + L +I + +LI LY+ C + A+ VFD M +++V
Sbjct: 96 ACARINALNEGEQMHNHITKLGLLSDIFVSNSLIHLYAACGNLCYARSVFDEMVVKDVVS 155
Query: 288 WNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKY 347
WN++I G+ + ++ + LF + N V D++T I V+ AC R + Y
Sbjct: 156 WNSLICGYSQCNRFKDILALFKLMQNEGVKA-----DKVTMIKVVSACTRLGDYSMA-DY 209
Query: 348 FRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSL 407
+ I+ Y I+ + + + + + AE++ NM +I+ ++ +
Sbjct: 210 MVRYIEDYCIEVDVYLGNTLVDYFGRRGQLQSAEKVFF-------NMKVRNIVTMNAMIA 262
Query: 408 CRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRM 463
+G + R K F + +D + +++ Y+ A + D + M++ ++
Sbjct: 263 AYAKGQDIVSAR--KIFDQIPKKDLISWSSMISGYSQANHFSDALEIFRQMQRAKV 316
>gi|297846530|ref|XP_002891146.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297336988|gb|EFH67405.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 554
Score = 230 bits (586), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 145/498 (29%), Positives = 254/498 (51%), Gaps = 15/498 (3%)
Query: 6 QIQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSNS 65
++ + + +GL ++S+ +L+ A G + T VF + N +I +Y
Sbjct: 51 KVHGYAVKTGLE-SDSYVCNSLMGMYAALGKMEITHKVFDEMPERDVVSWNGLISSYVGH 109
Query: 66 CVPDQGVVFYLQMIK-NGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPV 124
+ + + +M + + + T VS +C+ +E G + + +FE+ V
Sbjct: 110 GRFEDAISVFQRMSRESNLKADEGTIVSTLSACSVLKNLEIGERIYRYVV---TEFEMSV 166
Query: 125 M--NSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPER 182
N+L++M+ G +D AR +F M +++ W S+VSG+V +G A ELF+ P +
Sbjct: 167 RTGNALVDMFCKCGCLDKARAIFDSMRDKNVKCWTSMVSGYVSNGRTDEARELFERSPVK 226
Query: 183 NVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVH 242
+VV W M++GY + +L+LFR M + R ++ + S+LT C ++ +G+ +H
Sbjct: 227 DVVLWTAMMNGYVQFNRFDEALELFRCMQTARIRPDNFVLVSLLTGCAQTGALEQGKWIH 286
Query: 243 GYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPE 302
GY + + ++ TAL+D+Y+KC +E A VF M +R+ W ++I G +G
Sbjct: 287 GYIRENRVTVDKVVGTALVDMYAKCGCIETALGVFYEMKERDTASWTSLIYGLATNGMSG 346
Query: 303 EGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFA 362
+ L+ + N + D+ITF+ V+ AC + EGR+ F M + +KI+P
Sbjct: 347 RALDLYYEMEN-----VGVRLDDITFVAVLTACSHGGFVAEGRRIFYSMTERHKIQPKSE 401
Query: 363 HYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAK 422
HY C+ +L A L +EAEE++ KM + D ++ SLLS R G V + ER+A+
Sbjct: 402 HYSCLIDLLCRAGLLDEAEELIDKMHGERDKTLVP--VYCSLLSAARNYGNVKIAERVAE 459
Query: 423 SFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLKEVVEKLK 482
++ D S + L +VYA A +WEDV VR MK + + PGC +++ V +
Sbjct: 460 KLEKVEVSDSSAHTLLASVYASANRWEDVTNVRRKMKDLGIRKFPGCSSIEVDGVSHEFI 519
Query: 483 VGHFWRGGMK-EEVNKMM 499
VG+ K +E+N M+
Sbjct: 520 VGNDPSSHPKMDEINSML 537
Score = 120 bits (302), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 100/463 (21%), Positives = 189/463 (40%), Gaps = 91/463 (19%)
Query: 58 VIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNG 117
++K+ + S + + + ++ G P+++T + S + V G HG A+K G
Sbjct: 1 MLKSLAESKSFTKVLALFGELRGQGLYPDNFTLPVVLKSIGRLRKVIEGEKVHGYAVKTG 60
Query: 118 VDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFD 177
++ + V NSL+ MY G M+ +F +M RD++SWN ++S +V G A +F
Sbjct: 61 LESDSYVCNSLMGMYAALGKMEITHKVFDEMPERDVVSWNGLISSYVGHGRFEDAISVFQ 120
Query: 178 IMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNE 237
M +S + ++ T+ S L+AC
Sbjct: 121 RMSR------------------------------ESNLKADEGTIVSTLSACSVLKNLEI 150
Query: 238 GRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCI 297
G ++ Y V T + ++ AL+D++ KC ++ A+ +FDSM D+N+ CW +M+ G+
Sbjct: 151 GERIYRYVV-TEFEMSVRTGNALVDMFCKCGCLDKARAIFDSMRDKNVKCWTSMVSGYVS 209
Query: 298 HGKPEEGIKLF-----------TALVNGTV---------------AGGSISPDEITFIGV 331
+G+ +E +LF TA++NG V I PD + +
Sbjct: 210 NGRTDEARELFERSPVKDVVLWTAMMNGYVQFNRFDEALELFRCMQTARIRPDNFVLVSL 269
Query: 332 ICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPE-- 389
+ C + L +G K+ I ++ + + ++YA E A + +M E
Sbjct: 270 LTGCAQTGALEQG-KWIHGYIRENRVTVDKVVGTALVDMYAKCGCIETALGVFYEMKERD 328
Query: 390 ---------------------------DNDNMSFESIMWVSLLSLCRFQGAVAMVERLAK 422
+N + + I +V++L+ C G VA R+
Sbjct: 329 TASWTSLIYGLATNGMSGRALDLYYEMENVGVRLDDITFVAVLTACSHGGFVAEGRRIFY 388
Query: 423 SFVD---MDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRR 462
S + + P+ Y L+++ AG ++ + + M R
Sbjct: 389 SMTERHKIQPKS-EHYSCLIDLLCRAGLLDEAEELIDKMHGER 430
>gi|449471512|ref|XP_004153331.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Cucumis sativus]
Length = 607
Score = 230 bits (586), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 126/431 (29%), Positives = 226/431 (52%), Gaps = 43/431 (9%)
Query: 56 NAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALK 115
N +I AY+ P + + + M ++G + +T + + S A+ CV+ G H L+
Sbjct: 181 NIMIAAYAREGKPTECLELFKSMARSGIRSDLFTALPVISSIAQLKCVDWGKQTHAHILR 240
Query: 116 NGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHEL 175
NG D ++ V NSLI+MY +D +A ++
Sbjct: 241 NGSDSQVSVHNSLIDMYCECKILD-------------------------------SACKI 269
Query: 176 FDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARF 235
F+ M +++V+SW+ MI GY K+G +L LF +M G + + M ++L A
Sbjct: 270 FNWMTDKSVISWSAMIKGYVKNGQSLTALSLFSKMKSDGIQADFVIMINILPAFVHIGAL 329
Query: 236 NEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDS--MADRNLVCWNAMIL 293
+ +HGY+++ L L+TAL+ Y+KC +E+AQR+F+ + D++L+ WN+MI
Sbjct: 330 ENVKYLHGYSMKLGLTSLPSLNTALLITYAKCGSIEMAQRLFEEEKIDDKDLIMWNSMIS 389
Query: 294 GHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMID 353
H HG + KL+ + + PD++TF+G++ ACV + L+ +G+++F++M +
Sbjct: 390 AHANHGDWSQCFKLYNRM-----KCSNSKPDQVTFLGLLTACVNSGLVEKGKEFFKEMTE 444
Query: 354 FYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGA 413
Y +P+ HY CM NL A L EA E+++ MP D + +W LLS C+
Sbjct: 445 SYGCQPSQEHYACMVNLLGRAGLISEAGELVKNMPIKPD-----ARVWGPLLSACKMHPG 499
Query: 414 VAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVD 473
+ E A+ ++M+P++ Y L N+YA AG+W+ VA++R ++ + + ++PGC ++
Sbjct: 500 SKLAEFAAEKLINMEPRNAGNYILLSNIYAAAGKWDGVAKMRSFLRNKGLKKIPGCSWLE 559
Query: 474 LKEVVEKLKVG 484
+ V + +V
Sbjct: 560 INGHVTEFRVA 570
Score = 112 bits (279), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 81/334 (24%), Positives = 153/334 (45%), Gaps = 49/334 (14%)
Query: 77 QMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFG 136
+MI +P+S+TF +L A ++ + H +A+ + + +L V +++++Y
Sbjct: 101 RMIAEQLVPDSFTFFNLLRFIAGLNSIQLAKIVHCIAIVSKLSGDLLVNTAVLSLYSKL- 159
Query: 137 AMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSK 196
R L+ A +LFD MPE++ V WNIMI+ Y++
Sbjct: 160 --------------RSLVD----------------ARKLFDKMPEKDRVVWNIMIAAYAR 189
Query: 197 SGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIIL 256
G P L+LF+ M +SG R + T V+++ + + G+ H + +R + +
Sbjct: 190 EGKPTECLELFKSMARSGIRSDLFTALPVISSIAQLKCVDWGKQTHAHILRNGSDSQVSV 249
Query: 257 DTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTV 316
+LID+Y +C+ ++ A ++F+ M D++++ W+AMI G+ +G+ + LF+ +
Sbjct: 250 HNSLIDMYCECKILDSACKIFNWMTDKSVISWSAMIKGYVKNGQSLTALSLFSKM----- 304
Query: 317 AGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMAN----LYA 372
I D + I ++ A V L E KY Y +K + YA
Sbjct: 305 KSDGIQADFVIMINILPAFVHIGAL-ENVKYLHG----YSMKLGLTSLPSLNTALLITYA 359
Query: 373 GAELTEEAEEILRKMPEDNDNMSFESIMWVSLLS 406
E A+ + + D+ ++ IMW S++S
Sbjct: 360 KCGSIEMAQRLFEEEKIDDKDL----IMWNSMIS 389
Score = 68.6 bits (166), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 60/275 (21%), Positives = 111/275 (40%), Gaps = 36/275 (13%)
Query: 78 MIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGA 137
M+ P+ T+ + SC+ V G HG +K G D V +L MY
Sbjct: 1 MVAKSMHPDEETYPFVLRSCSSFSNVGFGRTIHGYLVKLGFDLFDVVATALAEMYEECIE 60
Query: 138 MDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKS 197
+ A +F + S +DL W S ++ D
Sbjct: 61 FENAHQLFDKRSVKDL-GWPSSLTTEGPQND----------------------------- 90
Query: 198 GNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILD 257
N ++F M+ + T ++L + VH + + L +++++
Sbjct: 91 -NGEGIFRVFGRMIAEQLVPDSFTFFNLLRFIAGLNSIQLAKIVHCIAIVSKLSGDLLVN 149
Query: 258 TALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVA 317
TA++ LYSK + + A+++FD M +++ V WN MI + GKP E ++LF ++ A
Sbjct: 150 TAVLSLYSKLRSLVDARKLFDKMPEKDRVVWNIMIAAYAREGKPTECLELFKSM-----A 204
Query: 318 GGSISPDEITFIGVICACVRAELLTEGRKYFRQMI 352
I D T + VI + + + + G++ ++
Sbjct: 205 RSGIRSDLFTALPVISSIAQLKCVDWGKQTHAHIL 239
>gi|357521295|ref|XP_003630936.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355524958|gb|AET05412.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 959
Score = 230 bits (586), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 131/419 (31%), Positives = 213/419 (50%), Gaps = 41/419 (9%)
Query: 56 NAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALK 115
A+I Y + + + + + +I+ G +PN T S+ +CA ++ G H LK
Sbjct: 449 TAMISGYVLNGLNVEALNLFRWLIQEGMVPNCLTMASVLPACAALASLKLGKELHCDILK 508
Query: 116 NGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHEL 175
G++ V +S+ MY +SG + A++
Sbjct: 509 KGLENVCQVGSSITYMYA-------------------------------KSGRLDLAYQF 537
Query: 176 FDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARF 235
F MP ++ V WN+MI +S++G P ++ LFR+M SG + + ++++ L+AC
Sbjct: 538 FRRMPVKDSVCWNLMIVSFSQNGKPELAIDLFRQMGTSGTKFDSVSLSATLSACANYPAL 597
Query: 236 NEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGH 295
G+ +H + VR S + + + LID+YSKC K+ +A+ VFD M +N V WN++I +
Sbjct: 598 YYGKELHCFVVRNSFISDTFVASTLIDMYSKCGKLALARSVFDMMDWKNEVSWNSIIAAY 657
Query: 296 CIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFY 355
HG+P E + LF +V I PD +TF+ ++ AC A L+ EG YFR M + Y
Sbjct: 658 GNHGRPRECLDLFHEMVE-----AGIQPDHVTFLVIMSACGHAGLVDEGIYYFRCMTEEY 712
Query: 356 KIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVA 415
I H+ CM +LY A EA + ++ MP D + W SLL CR G V
Sbjct: 713 GICARMEHFACMVDLYGRAGRLHEAFDTIKSMPFTPDAGT-----WGSLLGACRLHGNVE 767
Query: 416 MVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDL 474
+ + +K V++DP + Y L NV+A AG+WE V +VR LMK++ + ++PG +D+
Sbjct: 768 LAKLASKHLVELDPNNSGYYVLLSNVHAGAGEWESVLKVRSLMKEKGVQKIPGYSWIDV 826
Score = 119 bits (298), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 86/334 (25%), Positives = 152/334 (45%), Gaps = 39/334 (11%)
Query: 56 NAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALK 115
N ++ Y + + + + +M + PNS +FV L CA G V G HGL ++
Sbjct: 247 NVMLNGYVKNGDFNSALGTFQEMRNSCVKPNSVSFVCLLSVCATRGIVRAGIQLHGLVIR 306
Query: 116 NGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHEL 175
+G + + V N++I MY + G++ A ++
Sbjct: 307 SGFESDPTVANTIITMYS-------------------------------KCGNLFDARKI 335
Query: 176 FDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARF 235
FDIMP+ + V+WN +I+GY ++G ++ LF+ M+ SG + + T AS L + +S
Sbjct: 336 FDIMPQTDTVTWNGLIAGYVQNGFTDEAVALFKAMVTSGVKLDSITFASFLPSVLKSGSL 395
Query: 236 NEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGH 295
+ VH Y VR + ++ L +AL+D+Y K VE+A + F ++ AMI G+
Sbjct: 396 KYCKEVHSYIVRHGVPFDVYLKSALVDIYFKGGDVEMACKTFQQNTLVDVAVCTAMISGY 455
Query: 296 CIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFY 355
++G E + LF L+ + P+ +T V+ AC L G++ ++
Sbjct: 456 VLNGLNVEALNLFRWLIQ-----EGMVPNCLTMASVLPACAALASLKLGKELHCDILK-- 508
Query: 356 KIKPNFAHYW-CMANLYAGAELTEEAEEILRKMP 388
K N + +YA + + A + R+MP
Sbjct: 509 KGLENVCQVGSSITYMYAKSGRLDLAYQFFRRMP 542
Score = 118 bits (295), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 71/267 (26%), Positives = 123/267 (46%), Gaps = 31/267 (11%)
Query: 56 NAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALK 115
N +I+ +S D ++F+ +M+ + P+ YTF + +C V M H LA
Sbjct: 146 NWLIRGFSMLGCFDFALMFFFRMLGSNVAPDKYTFPYVIKACGGLNNVPLCKMVHELARS 205
Query: 116 NGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHEL 175
G +L + +SLI +Y +G + A L
Sbjct: 206 MGFHMDLFIGSSLIKLY-------------------------------TDNGYIHDAKYL 234
Query: 176 FDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARF 235
FD +P R+ + WN+M++GY K+G+ +L F+EM S + N + +L+ C
Sbjct: 235 FDELPVRDCILWNVMLNGYVKNGDFNSALGTFQEMRNSCVKPNSVSFVCLLSVCATRGIV 294
Query: 236 NEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGH 295
G +HG +R+ + + + +I +YSKC + A+++FD M + V WN +I G+
Sbjct: 295 RAGIQLHGLVIRSGFESDPTVANTIITMYSKCGNLFDARKIFDIMPQTDTVTWNGLIAGY 354
Query: 296 CIHGKPEEGIKLFTALVNGTVAGGSIS 322
+G +E + LF A+V V SI+
Sbjct: 355 VQNGFTDEAVALFKAMVTSGVKLDSIT 381
Score = 103 bits (258), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 76/304 (25%), Positives = 134/304 (44%), Gaps = 36/304 (11%)
Query: 43 VFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGC 102
+F + T N +I Y + D+ V + M+ +G +S TF S S K+G
Sbjct: 335 IFDIMPQTDTVTWNGLIAGYVQNGFTDEAVALFKAMVTSGVKLDSITFASFLPSVLKSGS 394
Query: 103 VERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSG 162
++ H +++GV F++ + ++L+++Y
Sbjct: 395 LKYCKEVHSYIVRHGVPFDVYLKSALVDIY------------------------------ 424
Query: 163 HVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTM 222
+ GD+ A + F +V MISGY +G +L LFR +++ G N TM
Sbjct: 425 -FKGGDVEMACKTFQQNTLVDVAVCTAMISGYVLNGLNVEALNLFRWLIQEGMVPNCLTM 483
Query: 223 ASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMAD 282
ASVL AC A G+ +H ++ L+ + +++ +Y+K ++++A + F M
Sbjct: 484 ASVLPACAALASLKLGKELHCDILKKGLENVCQVGSSITYMYAKSGRLDLAYQFFRRMPV 543
Query: 283 RNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLT 342
++ VCWN MI+ +GKPE I LF + GT D ++ + AC L
Sbjct: 544 KDSVCWNLMIVSFSQNGKPELAIDLFRQM--GT---SGTKFDSVSLSATLSACANYPALY 598
Query: 343 EGRK 346
G++
Sbjct: 599 YGKE 602
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 63/274 (22%), Positives = 113/274 (41%), Gaps = 35/274 (12%)
Query: 32 ADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFV 91
A G D F+ + + C N +I ++S + P+ + + QM +G +S +
Sbjct: 526 AKSGRLDLAYQFFRRMPVKDSVCWNLMIVSFSQNGKPELAIDLFRQMGTSGTKFDSVSLS 585
Query: 92 SLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPR 151
+ +CA + G H ++N + V ++LI+MY G + AR++F M +
Sbjct: 586 ATLSACANYPALYYGKELHCFVVRNSFISDTFVASTLIDMYSKCGKLALARSVFDMMDWK 645
Query: 152 DLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMM 211
+ +SWNSI I+ Y G P L LF EM+
Sbjct: 646 NEVSWNSI-------------------------------IAAYGNHGRPRECLDLFHEMV 674
Query: 212 KSGFRGNDKTMASVLTACGRSARFNEG-RSVHGYTVRTSLKPNIILDTALIDLYSKCQKV 270
++G + + T +++ACG + +EG T + + ++DLY + ++
Sbjct: 675 EAGIQPDHVTFLVIMSACGHAGLVDEGIYYFRCMTEEYGICARMEHFACMVDLYGRAGRL 734
Query: 271 EVAQRVFDSMA-DRNLVCWNAMILGHC-IHGKPE 302
A SM + W ++ LG C +HG E
Sbjct: 735 HEAFDTIKSMPFTPDAGTWGSL-LGACRLHGNVE 767
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 55/256 (21%), Positives = 110/256 (42%), Gaps = 18/256 (7%)
Query: 185 VSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGY 244
+ WN +I G+S G +L F M+ S + T V+ ACG + VH
Sbjct: 143 LPWNWLIRGFSMLGCFDFALMFFFRMLGSNVAPDKYTFPYVIKACGGLNNVPLCKMVHEL 202
Query: 245 TVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEG 304
++ + ++LI LY+ + A+ +FD + R+ + WN M+ G+ +G
Sbjct: 203 ARSMGFHMDLFIGSSLIKLYTDNGYIHDAKYLFDELPVRDCILWNVMLNGYVKNGDFNSA 262
Query: 305 IKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMI-DFYKIKPNFAH 363
+ F + N V P+ ++F+ ++ C ++ G + +I ++ P A+
Sbjct: 263 LGTFQEMRNSCV-----KPNSVSFVCLLSVCATRGIVRAGIQLHGLVIRSGFESDPTVAN 317
Query: 364 YWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQG----AVAMVER 419
+ +Y+ +A +I MP+ +++ W L++ G AVA+ +
Sbjct: 318 --TIITMYSKCGNLFDARKIFDIMPQT------DTVTWNGLIAGYVQNGFTDEAVALFKA 369
Query: 420 LAKSFVDMDPQDFSRY 435
+ S V +D F+ +
Sbjct: 370 MVTSGVKLDSITFASF 385
Score = 41.2 bits (95), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 41/203 (20%), Positives = 86/203 (42%), Gaps = 10/203 (4%)
Query: 17 FFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYL 76
F +++F L+ + G VF ++ N++I AY N P + + +
Sbjct: 612 FISDTFVASTLIDMYSKCGKLALARSVFDMMDWKNEVSWNSIIAAYGNHGRPRECLDLFH 671
Query: 77 QMIKNGFMPNSYTFVSLFGSCAKTGCVERG-GMCHGLALKNGVDFELPVMNSLINMYGCF 135
+M++ G P+ TF+ + +C G V+ G + + G+ + ++++YG
Sbjct: 672 EMVEAGIQPDHVTFLVIMSACGHAGLVDEGIYYFRCMTEEYGICARMEHFACMVDLYGRA 731
Query: 136 GAMDCARNMFVQMS-PRDLISWNSIVS-----GHVRSGDMSAAHELFDIMPERNVVSWNI 189
G + A + M D +W S++ G+V +++ H L ++ P N + +
Sbjct: 732 GRLHEAFDTIKSMPFTPDAGTWGSLLGACRLHGNVELAKLASKH-LVELDP--NNSGYYV 788
Query: 190 MISGYSKSGNPGCSLKLFREMMK 212
++S S+ R +MK
Sbjct: 789 LLSNVHAGAGEWESVLKVRSLMK 811
>gi|357437223|ref|XP_003588887.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355477935|gb|AES59138.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 697
Score = 229 bits (585), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 142/473 (30%), Positives = 229/473 (48%), Gaps = 41/473 (8%)
Query: 6 QIQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSNS 65
+I L+ SG F +SF + L+ G + + VF+ + N N++I Y
Sbjct: 228 EIHKELVNSG-FRMDSFVSAALVDMYGKCGQLEMAIEVFEQMPNKTVVAWNSMINGYGFK 286
Query: 66 CVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVM 125
+ + +M G P T S +C+++ + G HG ++N + ++ +
Sbjct: 287 GDGISCIQLFKRMYSEGVKPTLTTLTSTLMACSQSAQLLEGKFVHGYIIRNRIQPDIFLN 346
Query: 126 NSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVV 185
+SL+++Y + G + +A +F +MP+ V
Sbjct: 347 SSLMDLY-------------------------------FKCGKVESAETIFKLMPKTTTV 375
Query: 186 SWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYT 245
SWN+MISGY G +L+LF EM KS + T SVL AC + A +GR +H
Sbjct: 376 SWNVMISGYVTEGKLFDALRLFGEMSKSFVEPDAITFTSVLAACSQLAALEKGREIHNLI 435
Query: 246 VRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGI 305
V +L N ++ AL+D+Y+KC VE A VF + +R+LV W +MI + HG+ E +
Sbjct: 436 VERNLGNNEVVMGALLDMYAKCGAVEEAFGVFKCLPERDLVSWTSMITAYGSHGRVYEAL 495
Query: 306 KLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYW 365
+LF ++ V PD +TF+ ++ AC A L+ +G +F QMI+ Y I P HY
Sbjct: 496 ELFAEMLQSNV-----KPDRVTFLAILSACSHAGLVDDGLYHFNQMINVYGIIPRIEHYS 550
Query: 366 CMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFV 425
C+ L A EA EIL+ PE +D+ S +L S CR + + +A++ +
Sbjct: 551 CLITLLGRAGRLHEAYEILQSNPEISDDFQLLS----TLFSACRLHKNLDLGVEIAENLI 606
Query: 426 DMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLKEVV 478
D DP D S Y L N+YA G+W++V VR MK + + PGC +++ E +
Sbjct: 607 DKDPDDSSTYIILSNMYASFGKWDEVRMVRSKMKDLGLKKNPGCSWIEINEKI 659
Score = 164 bits (416), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 106/367 (28%), Positives = 178/367 (48%), Gaps = 43/367 (11%)
Query: 40 TVLVFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAK 99
V +F + + C N VI Y S ++ + ++ M + GF P+S T + SCA+
Sbjct: 160 AVKLFDEMPDKDVACWNTVISCYYQSGKFEEALRYFGMMRRFGFEPDSVTITTAISSCAR 219
Query: 100 TGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSI 159
++RG H + +G + V +L++MYG
Sbjct: 220 LLDLDRGREIHKELVNSGFRMDSFVSAALVDMYG-------------------------- 253
Query: 160 VSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGND 219
+ G + A E+F+ MP + VV+WN MI+GY G+ ++LF+ M G +
Sbjct: 254 -----KCGQLEMAIEVFEQMPNKTVVAWNSMINGYGFKGDGISCIQLFKRMYSEGVKPTL 308
Query: 220 KTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDS 279
T+ S L AC +SA+ EG+ VHGY +R ++P+I L+++L+DLY KC KVE A+ +F
Sbjct: 309 TTLTSTLMACSQSAQLLEGKFVHGYIIRNRIQPDIFLNSSLMDLYFKCGKVESAETIFKL 368
Query: 280 MADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAE 339
M V WN MI G+ GK + ++LF G ++ + PD ITF V+ AC +
Sbjct: 369 MPKTTTVSWNVMISGYVTEGKLFDALRLF-----GEMSKSFVEPDAITFTSVLAACSQLA 423
Query: 340 LLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESI 399
L +GR+ +++ + N + ++YA EEA + + +PE + +
Sbjct: 424 ALEKGREIHNLIVE-RNLGNNEVVMGALLDMYAKCGAVEEAFGVFKCLPER------DLV 476
Query: 400 MWVSLLS 406
W S+++
Sbjct: 477 SWTSMIT 483
Score = 152 bits (385), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 133/518 (25%), Positives = 229/518 (44%), Gaps = 68/518 (13%)
Query: 1 MKQLLQIQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCV-NAVI 59
+KQ + ++T GL N+ + NL+ DY VF I NP + N ++
Sbjct: 19 LKQGKVLHQKVVTLGLQ-NDVYVCKNLISLYVSCNLFDYAKNVFDVIENPFEISLCNGLM 77
Query: 60 KAYSNSCVPDQGV-VFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGV 118
Y+ +C+ D+ + +F M P+SYT+ S+ +C V G M H +K G+
Sbjct: 78 AGYTRNCMYDEALGLFDKLMCYPCLKPDSYTYPSVLKACGGLRRVVLGQMIHTCLVKEGL 137
Query: 119 DFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDI 178
++ V +SL+ MY +CA +LFD
Sbjct: 138 MVDIVVGSSLVGMYAKCNEFECAV-------------------------------KLFDE 166
Query: 179 MPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEG 238
MP+++V WN +IS Y +SG +L+ F M + GF + T+ + +++C R + G
Sbjct: 167 MPDKDVACWNTVISCYYQSGKFEEALRYFGMMRRFGFEPDSVTITTAISSCARLLDLDRG 226
Query: 239 RSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIH 298
R +H V + + + + AL+D+Y KC ++E+A VF+ M ++ +V WN+MI G+
Sbjct: 227 REIHKELVNSGFRMDSFVSAALVDMYGKCGQLEMAIEVFEQMPNKTVVAWNSMINGYGFK 286
Query: 299 GKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIK 358
G I+LF + + V P T + AC ++ L EG K+ I +I+
Sbjct: 287 GDGISCIQLFKRMYSEGV-----KPTLTTLTSTLMACSQSAQLLEG-KFVHGYIIRNRIQ 340
Query: 359 PNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQG----AV 414
P+ + +LY E AE I + MP+ ++ W ++S +G A+
Sbjct: 341 PDIFLNSSLMDLYFKCGKVESAETIFKLMPKTT------TVSWNVMISGYVTEGKLFDAL 394
Query: 415 AMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRE---LMKKRRMGRMPGCRL 471
+ ++KSFV+ D F+ +V A Q + + RE L+ +R +G
Sbjct: 395 RLFGEMSKSFVEPDAITFT------SVLAACSQLAALEKGREIHNLIVERNLGN------ 442
Query: 472 VDLKEVVEKLKVGHFWRGGMKEEVNKMMECRQSRSLAT 509
EVV + + + G EE + +C R L +
Sbjct: 443 ---NEVVMGALLDMYAKCGAVEEAFGVFKCLPERDLVS 477
Score = 40.0 bits (92), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 54/250 (21%), Positives = 99/250 (39%), Gaps = 50/250 (20%)
Query: 220 KTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDS 279
+ + +L A S +G+ +H V L+ ++ + LI LY C + A+ VFD
Sbjct: 4 RKLIPLLRASVNSKSLKQGKVLHQKVVTLGLQNDVYVCKNLISLYVSCNLFDYAKNVFDV 63
Query: 280 MADR-NLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRA 338
+ + + N ++ G+ + +E + LF L + + PD T+ V+ AC
Sbjct: 64 IENPFEISLCNGLMAGYTRNCMYDEALGLFDKL----MCYPCLKPDSYTYPSVLKACGGL 119
Query: 339 ELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFES 398
+ G QMI +K M ++ G+ L
Sbjct: 120 RRVVLG-----QMIHTCLVKEGL-----MVDIVVGSSL---------------------- 147
Query: 399 IMWVSLLSLC-RFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVREL 457
V + + C F+ AV K F +M +D + + +++ Y +G++E+ R +
Sbjct: 148 ---VGMYAKCNEFECAV-------KLFDEMPDKDVACWNTVISCYYQSGKFEEALRYFGM 197
Query: 458 MKKRRMGRMP 467
M RR G P
Sbjct: 198 M--RRFGFEP 205
>gi|357502521|ref|XP_003621549.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|87241485|gb|ABD33343.1| Tetratricopeptide-like helical [Medicago truncatula]
gi|355496564|gb|AES77767.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 654
Score = 229 bits (585), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 141/485 (29%), Positives = 236/485 (48%), Gaps = 52/485 (10%)
Query: 5 LQIQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSN 64
+ + L+ SGL + + L+ D GS D+ VF F NA+ +A +
Sbjct: 94 VDVHHRLVGSGLD-QDPYLATKLINMYCDLGSVDHACKVFDETREKTIFVWNAIFRALAM 152
Query: 65 SCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGC----VERGGMCHGLALKNGVDF 120
+ + +V Y QM G N +T+ + +C + + +G H L++G +
Sbjct: 153 ASRGEDLLVLYGQMNWIGIPSNRFTYTYVLKACVVSELSICPLRKGKEIHAHILRHGYEG 212
Query: 121 ELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMP 180
+ VM +L+++Y FG + S A +F MP
Sbjct: 213 HVHVMTTLLDVYARFGYV-------------------------------SYASSVFGAMP 241
Query: 181 ERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRG--NDKTMASVLTACGRSARFNEG 238
++N+VSW+ MI+ Y+K+ P +L+LF+ MM N TM SVL AC A G
Sbjct: 242 DKNIVSWSAMIACYAKNEMPMKALELFQIMMLEACDTVPNPITMVSVLQACASLAALEHG 301
Query: 239 RSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIH 298
+ VH Y +R L + + LI +Y +C ++ QRVFD M R+++ WN++I + +H
Sbjct: 302 KLVHAYVLRRGLDSTLPVLNTLITMYGRCGEISTGQRVFDYMKKRDVISWNSLISIYGMH 361
Query: 299 GKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIK 358
G ++ I++F ++N V SP ITFI V+CAC A L+ E + F M++ Y+I
Sbjct: 362 GLGKKAIQIFENMINRGV-----SPSYITFITVLCACSHAGLVEEAKILFESMLNKYRIH 416
Query: 359 PNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFE--SIMWVSLLSLCRFQGAVAM 416
P HY CM ++ A +EA E+++ NM F+ +W SLL CR V +
Sbjct: 417 PRMEHYACMVDILGRANRLDEAIELIQ-------NMDFKPGPTVWGSLLGSCRIHCNVEL 469
Query: 417 VERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLKE 476
ER + +++P++ Y L ++YA + W DV RVR+ ++ R + ++P C +++K
Sbjct: 470 AERASAMLFELEPKNAGNYVLLSHIYAKSRMWNDVRRVRKQLESRGLQKIPSCSWIEVKR 529
Query: 477 VVEKL 481
+ L
Sbjct: 530 KIYSL 534
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 64/265 (24%), Positives = 111/265 (41%), Gaps = 38/265 (14%)
Query: 85 PNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNM 144
P TF L SC + + G H + +G+D + + LINMY G++D
Sbjct: 72 PTKKTFELLINSCIEQNSLSDGVDVHHRLVGSGLDQDPYLATKLINMYCDLGSVD----- 126
Query: 145 FVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSL 204
A ++FD E+ + WN + + + L
Sbjct: 127 --------------------------HACKVFDETREKTIFVWNAIFRALAMASRGEDLL 160
Query: 205 KLFREMMKSGFRGNDKTMASVLTACGRS----ARFNEGRSVHGYTVRTSLKPNIILDTAL 260
L+ +M G N T VL AC S +G+ +H + +R + ++ + T L
Sbjct: 161 VLYGQMNWIGIPSNRFTYTYVLKACVVSELSICPLRKGKEIHAHILRHGYEGHVHVMTTL 220
Query: 261 IDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGS 320
+D+Y++ V A VF +M D+N+V W+AMI + + P + ++LF ++ +
Sbjct: 221 LDVYARFGYVSYASSVFGAMPDKNIVSWSAMIACYAKNEMPMKALELFQIMM---LEACD 277
Query: 321 ISPDEITFIGVICACVRAELLTEGR 345
P+ IT + V+ AC L G+
Sbjct: 278 TVPNPITMVSVLQACASLAALEHGK 302
>gi|449523219|ref|XP_004168621.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g33170-like [Cucumis sativus]
Length = 755
Score = 229 bits (585), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 130/477 (27%), Positives = 245/477 (51%), Gaps = 31/477 (6%)
Query: 6 QIQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSNS 65
Q+ A+LI + F+ S +L + F ++ + FK I +VI + ++
Sbjct: 186 QVHAYLIKYHIDFDTSIGN-SLSSFYSKFRRLEFAIKAFKIIKEKDVISWTSVISSCCDN 244
Query: 66 CVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVM 125
+ + F++ M+ +G PN YT S+ +C ++ G H L++K G + +
Sbjct: 245 GQAARSLSFFMDMLSDGMKPNEYTLTSVLSACCVMLTLDLGAQIHSLSIKLGYGSSILIK 304
Query: 126 NSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVV 185
NS++ +Y G + A+ +F M +L++WN++++GH + D++ E +V
Sbjct: 305 NSIMYLYLKCGWLIEAQKLFEGMETLNLVTWNAMIAGHAKMMDLA----------EDDVA 354
Query: 186 SWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYT 245
+ KSG+ +L +F+++ +SG + + T +SVL+ C +G +HG
Sbjct: 355 A--------HKSGS--TALAMFQKLYRSGMKPDLFTFSSVLSVCSNLVALEQGEQIHGQI 404
Query: 246 VRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGI 305
+++ + ++++ TAL+ +Y+KC ++ A + F M R ++ W +MI G HG ++ +
Sbjct: 405 IKSGVLADVVVGTALVSMYNKCGSIDKASKAFLEMPSRTMISWTSMITGFARHGLSQQAL 464
Query: 306 KLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYW 365
+LF + + G I P+++TF+GV+ AC A L E YF M Y IKP H+
Sbjct: 465 QLFEDM---RLVG--IKPNQVTFVGVLSACSHAGLADEALYYFELMQKQYNIKPVMDHFA 519
Query: 366 CMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFV 425
C+ ++Y EEA +++ KM N +W L++ CR G + A+ +
Sbjct: 520 CLIDMYLRLGRVEEAFDVVHKM-----NFEPNETIWSMLIAGCRSHGKSDLGFYAAEQLL 574
Query: 426 DMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLKEVVEKLK 482
+ P+D Y LLN++ AG+W+DV++VR+LMK+ ++G++ + +KE V K
Sbjct: 575 KLKPKDVETYVSLLNMHISAGRWKDVSKVRKLMKEEKVGKLKDWSWISIKEKVYSFK 631
Score = 119 bits (297), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 84/357 (23%), Positives = 147/357 (41%), Gaps = 48/357 (13%)
Query: 7 IQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSNSC 66
I H++ +G F + F L+ + G + VF + ++ Y +
Sbjct: 86 IHGHIVKTG-FHEDLFVMTFLVNVYSKCGVMESAHKVFDNLPRRNVNAWTTLLTGYVQNS 144
Query: 67 VPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMN 126
P + +++M++ G P++YT + +C+ +E G H +K +DF+ + N
Sbjct: 145 HPLLALQLFIKMLEAGAYPSNYTLGIVLNACSSLQSIEFGKQVHAYLIKYHIDFDTSIGN 204
Query: 127 SLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVS 186
SL + Y F ++ A F + +D+ISW S+
Sbjct: 205 SLSSFYSKFRRLEFAIKAFKIIKEKDVISWTSV--------------------------- 237
Query: 187 WNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTV 246
IS +G SL F +M+ G + N+ T+ SVL+AC + G +H ++
Sbjct: 238 ----ISSCCDNGQAARSLSFFMDMLSDGMKPNEYTLTSVLSACCVMLTLDLGAQIHSLSI 293
Query: 247 RTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGH----------- 295
+ +I++ +++ LY KC + AQ++F+ M NLV WNAMI GH
Sbjct: 294 KLGYGSSILIKNSIMYLYLKCGWLIEAQKLFEGMETLNLVTWNAMIAGHAKMMDLAEDDV 353
Query: 296 CIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMI 352
H + +F L + PD TF V+ C L +G + Q+I
Sbjct: 354 AAHKSGSTALAMFQKLYR-----SGMKPDLFTFSSVLSVCSNLVALEQGEQIHGQII 405
Score = 107 bits (267), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 62/252 (24%), Positives = 117/252 (46%), Gaps = 37/252 (14%)
Query: 84 MPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARN 143
+ +SY F L C M HG +K G +L VM L+N+Y
Sbjct: 62 IESSYYF-PLLQECIDRNLATEARMIHGHIVKTGFHEDLFVMTFLVNVYS---------- 110
Query: 144 MFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCS 203
+ G M +AH++FD +P RNV +W +++GY ++ +P +
Sbjct: 111 ---------------------KCGVMESAHKVFDNLPRRNVNAWTTLLTGYVQNSHPLLA 149
Query: 204 LKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDL 263
L+LF +M+++G ++ T+ VL AC G+ VH Y ++ + + + +L
Sbjct: 150 LQLFIKMLEAGAYPSNYTLGIVLNACSSLQSIEFGKQVHAYLIKYHIDFDTSIGNSLSSF 209
Query: 264 YSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISP 323
YSK +++E A + F + +++++ W ++I C +G+ + F +++ + P
Sbjct: 210 YSKFRRLEFAIKAFKIIKEKDVISWTSVISSCCDNGQAARSLSFFMDMLS-----DGMKP 264
Query: 324 DEITFIGVICAC 335
+E T V+ AC
Sbjct: 265 NEYTLTSVLSAC 276
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 56/219 (25%), Positives = 98/219 (44%), Gaps = 15/219 (6%)
Query: 209 EMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQ 268
E K G R +L C E R +HG+ V+T ++ + T L+++YSKC
Sbjct: 54 EEPKLGTRIESSYYFPLLQECIDRNLATEARMIHGHIVKTGFHEDLFVMTFLVNVYSKCG 113
Query: 269 KVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITF 328
+E A +VFD++ RN+ W ++ G+ + P ++LF ++ AG P T
Sbjct: 114 VMESAHKVFDNLPRRNVNAWTTLLTGYVQNSHPLLALQLFIKMLE---AGA--YPSNYTL 168
Query: 329 IGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMP 388
V+ AC + + G++ +I Y I + + +++ Y+ E A + + +
Sbjct: 169 GIVLNACSSLQSIEFGKQVHAYLIK-YHIDFDTSIGNSLSSFYSKFRRLEFAIKAFKIIK 227
Query: 389 EDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDM 427
E + I W S++S C G A R F+DM
Sbjct: 228 EK------DVISWTSVISSCCDNGQAA---RSLSFFMDM 257
>gi|225432810|ref|XP_002283562.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g43790-like [Vitis vinifera]
Length = 590
Score = 229 bits (585), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 153/516 (29%), Positives = 243/516 (47%), Gaps = 64/516 (12%)
Query: 1 MKQLLQIQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIK 60
+ L Q+ AH+IT+GL F+ + LL S + + + +F I NP F N +I
Sbjct: 22 LDTLKQVHAHMITTGLIFHTYPLSRILLISSTIVFT--HALSIFNHIPNPTIFLYNTLIS 79
Query: 61 AYSNSCVPDQGVVFYLQ---MIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNG 117
+ +N P + F L + PN +TF SLF +C + G H LK
Sbjct: 80 SLAN-IKPHTHIAFSLYSRVLTHTTLKPNGFTFPSLFKACGSQPWLRHGRALHTHVLK-- 136
Query: 118 VDFELP-----VMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAA 172
F P V +L+N Y G + R +F Q+S DL
Sbjct: 137 --FLEPTCDPFVQAALLNYYAKCGKVGACRYLFNQISKPDL------------------- 175
Query: 173 HELFDIMPERNVVSWNIMISGYSKSGNPGCS--------LKLFREMMKSGFRGNDKTMAS 224
SWN ++S Y + C L LF EM KS + N+ T+ +
Sbjct: 176 ------------ASWNSILSAYVHNSGAICEDVSLSLEVLTLFIEMQKSLIKANEVTLVA 223
Query: 225 VLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRN 284
+++AC ++G H Y ++ +LK N + TALID+YSKC +++A ++FD + R+
Sbjct: 224 LISACAELGALSQGAWAHVYVLKHNLKLNHFVGTALIDMYSKCGCLDLACQLFDQLPHRD 283
Query: 285 LVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEG 344
+C+NAMI G IHG + + LF + T+ G ++PD++T + +C+C L+ EG
Sbjct: 284 TLCYNAMIGGFAIHGYGHQALDLFKKM---TLEG--LAPDDVTLVVTMCSCSHVGLVEEG 338
Query: 345 RKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSL 404
F M + Y ++P HY C+ +L A EAEE + MP M +++W SL
Sbjct: 339 CDVFESMKEVYGVEPKLEHYGCLVDLLGRAGRLREAEERVLNMP-----MKPNAVIWRSL 393
Query: 405 LSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMG 464
L R G + + E + K + ++P+ Y L N+YA +W+DV RVR+LMK +
Sbjct: 394 LGAARVHGNLEIGEVVLKHLIQLEPETSGNYVLLSNMYASINRWDDVKRVRKLMKDHGIN 453
Query: 465 RMPGCRLVDLKEVVEKLKVGHFWRGGMKEEVNKMME 500
++PG LV++ + + +G KE K+ E
Sbjct: 454 KVPGSSLVEVGGAMHEFLMGDKTHPRSKEIYLKLEE 489
>gi|125572419|gb|EAZ13934.1| hypothetical protein OsJ_03861 [Oryza sativa Japonica Group]
Length = 1031
Score = 229 bits (585), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 127/469 (27%), Positives = 248/469 (52%), Gaps = 13/469 (2%)
Query: 6 QIQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSNS 65
Q+ H+ GL ++ F + +L+ A G+ Y VF + N++I YS
Sbjct: 573 QMHNHITKLGLL-SDIFVSNSLIHLYAACGNLCYARSVFDEMVVKDVVSWNSLICGYSQ- 630
Query: 66 CVPDQGVVFYLQMIKN-GFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPV 124
C + ++ ++++N G + T + + +C + G ++ ++ +
Sbjct: 631 CNRFKDILALFKLMQNEGVKADKVTMIKVVSACTRLGDYSMADYMVRYIEDYCIEVDVYL 690
Query: 125 MNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNV 184
N+L++ +G G + A +F M R++++ N++++ + + D+ +A ++FD +P++++
Sbjct: 691 GNTLVDYFGRRGQLQSAEKVFFNMKVRNIVTMNAMIAAYAKGQDIVSARKIFDQIPKKDL 750
Query: 185 VSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGY 244
+SW+ MISGYS++ + +L++FR+M ++ + + +ASV+++C + G+ VH Y
Sbjct: 751 ISWSSMISGYSQANHFSDALEIFRQMQRAKVKPDAIVIASVVSSCAHLGALDLGKWVHEY 810
Query: 245 TVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEG 304
R ++K + I++ +LID+Y KC + A +VF M +++ + WN++I+G +G +E
Sbjct: 811 VRRNNIKADTIMENSLIDMYMKCGSAKEALQVFKEMKEKDTLSWNSIIIGLANNGFEKES 870
Query: 305 IKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHY 364
+ LF A++ P+ +TF+GV+ AC A+L+ EG +F M Y ++P HY
Sbjct: 871 LNLFQAMLT-----EGFRPNGVTFLGVLIACANAKLVEEGLDHFESMKRLYSLEPQMKHY 925
Query: 365 WCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSF 424
C+ +L A E+A + +MP D D ++W LL C G VA+ E + K
Sbjct: 926 GCVVDLLGRAGQLEKALRFITEMPIDPD-----PVVWRILLGSCNTHGDVAIAEIVTKKL 980
Query: 425 VDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVD 473
+++P + Y L N YA A +W + VR+ M + + PGC V+
Sbjct: 981 NELEPSNSGNYTLLSNAYASAHRWSEAMNVRQCMADTDVRKSPGCSAVE 1029
Score = 211 bits (538), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 126/410 (30%), Positives = 214/410 (52%), Gaps = 18/410 (4%)
Query: 56 NAVIKAYSNSCVPDQGVVFYLQMIKNG---FMPNSYTFVSLFGSCAKTGCVERGGMCHGL 112
+A++KAYS+ P LQ+ ++ ++Y F +CA G HGL
Sbjct: 59 HALLKAYSHGPHPQDA----LQLFRHARWHAADDTYAFTFALKACAGLGWPRCCMQLHGL 114
Query: 113 ALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAA 172
++ G +F+ V +L+N+Y G + +R F +M ++ +SWN +++G G++ A
Sbjct: 115 VVRKGFEFQTYVHTALVNVYILCGCLADSRMAFEEMPVKNAVSWNVVITGFAGWGEVEYA 174
Query: 173 HELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRS 232
LF+ MP RNVVSW+ MI GY+++ P ++ LFR MM G ++ T+ +V+ A
Sbjct: 175 RLLFERMPCRNVVSWSGMIDGYTRACRPVEAVALFRRMMAEGISPSEITVLAVVPALSNV 234
Query: 233 ARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMAD-RNLVCWNAM 291
+ G ++HGY + L ++ + +LIDLY+K ++ + RVFD M D RNLV W ++
Sbjct: 235 GKILIGEALHGYCEKEGLVWDVRVGNSLIDLYAKIGSIQNSLRVFDEMLDRRNLVSWTSI 294
Query: 292 ILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQM 351
I G +HG + ++LF + I P+ ITF+ V+ AC L+ +G +F+ M
Sbjct: 295 ISGFAMHGLSVKAVELFADMRR-----AGIRPNRITFLSVLHACSHGGLVEQGVAFFKSM 349
Query: 352 IDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQ 411
I Y I P+ H+ C+ ++ A EAE+I+R P + + +W +LL C
Sbjct: 350 IYEYNINPDVKHFGCIIDMLGRAGRLREAEQIIRDFP-----VEVNATVWRTLLGCCSKY 404
Query: 412 GAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKR 461
G V M ER K + ++ + + L N+ ++ D VR+L+ +R
Sbjct: 405 GEVEMGERTMKKILALEREFGGDFVVLSNMLTELRRFSDAEIVRKLVDQR 454
Score = 129 bits (324), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 98/407 (24%), Positives = 188/407 (46%), Gaps = 21/407 (5%)
Query: 1 MKQLLQIQAHLITSGLFFNNSFWTINLLKHSADFGSPD--YTVLVFKCINNPGTFCVNAV 58
M+ + ++ A+ I SGL+ N + ++ + S PD + VF I P TF N +
Sbjct: 466 MEAIKRLHAYYIVSGLY--NCHYAMSKVLRSYAILQPDLVFAHKVFDQIEAPTTFLWNIL 523
Query: 59 IKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGV 118
I+ + S P + FY + G +P++ TF + +CA+ + G H K G+
Sbjct: 524 IRGLAQSDAPADAIAFYKKAQGGGMVPDNLTFPFILKACARINALNEGEQMHNHITKLGL 583
Query: 119 DFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDI 178
++ V NSLI++Y G + AR++F +M +D++SWNS++ G+ + LF +
Sbjct: 584 LSDIFVSNSLIHLYAACGNLCYARSVFDEMVVKDVVSWNSLICGYSQCNRFKDILALFKL 643
Query: 179 MPERNV----VSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSAR 234
M V V+ ++S ++ G+ + + R + + +++ GR +
Sbjct: 644 MQNEGVKADKVTMIKVVSACTRLGDYSMADYMVRYIEDYCIEVDVYLGNTLVDYFGRRGQ 703
Query: 235 FNEGRSV-HGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMIL 293
V VR NI+ A+I Y+K Q + A+++FD + ++L+ W++MI
Sbjct: 704 LQSAEKVFFNMKVR-----NIVTMNAMIAAYAKGQDIVSARKIFDQIPKKDLISWSSMIS 758
Query: 294 GHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMID 353
G+ + +++F + V PD I V+ +C L G K+ + +
Sbjct: 759 GYSQANHFSDALEIFRQMQRAKV-----KPDAIVIASVVSSCAHLGALDLG-KWVHEYVR 812
Query: 354 FYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIM 400
IK + + ++Y +EA ++ ++M E D +S+ SI+
Sbjct: 813 RNNIKADTIMENSLIDMYMKCGSAKEALQVFKEMKE-KDTLSWNSII 858
Score = 102 bits (253), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 90/407 (22%), Positives = 175/407 (42%), Gaps = 44/407 (10%)
Query: 86 NSYTFVSLFGSCAKTGCVERG--GMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARN 143
N+ + +L G C+K G VE G M LAL+ + V+++++ F + R
Sbjct: 390 NATVWRTLLGCCSKYGEVEMGERTMKKILALEREFGGDFVVLSNMLTELRRFSDAEIVRK 449
Query: 144 M------------FVQMSPRDLISWNSIVSG---------------HVRSGDMSAAHELF 176
+ V+M + IVSG + D+ AH++F
Sbjct: 450 LVDQRNSVKSFFNIVRMEAIKRLHAYYIVSGLYNCHYAMSKVLRSYAILQPDLVFAHKVF 509
Query: 177 DIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFN 236
D + WNI+I G ++S P ++ +++ G ++ T +L AC R N
Sbjct: 510 DQIEAPTTFLWNILIRGLAQSDAPADAIAFYKKAQGGGMVPDNLTFPFILKACARINALN 569
Query: 237 EGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHC 296
EG +H + + L +I + +LI LY+ C + A+ VFD M +++V WN++I G+
Sbjct: 570 EGEQMHNHITKLGLLSDIFVSNSLIHLYAACGNLCYARSVFDEMVVKDVVSWNSLICGYS 629
Query: 297 IHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYK 356
+ ++ + LF + N V D++T I V+ AC R + Y + I+ Y
Sbjct: 630 QCNRFKDILALFKLMQNEGVKA-----DKVTMIKVVSACTRLGDYSMA-DYMVRYIEDYC 683
Query: 357 IKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAM 416
I+ + + + + + AE++ NM +I+ ++ + +G +
Sbjct: 684 IEVDVYLGNTLVDYFGRRGQLQSAEKVFF-------NMKVRNIVTMNAMIAAYAKGQDIV 736
Query: 417 VERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRM 463
R K F + +D + +++ Y+ A + D + M++ ++
Sbjct: 737 SAR--KIFDQIPKKDLISWSSMISGYSQANHFSDALEIFRQMQRAKV 781
Score = 82.8 bits (203), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 64/277 (23%), Positives = 125/277 (45%), Gaps = 36/277 (12%)
Query: 32 ADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFV 91
A +G +Y L+F+ + + +I Y+ +C P + V + +M+ G P+ T +
Sbjct: 166 AGWGEVEYARLLFERMPCRNVVSWSGMIDGYTRACRPVEAVALFRRMMAEGISPSEITVL 225
Query: 92 SLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQM-SP 150
++ + + G + G HG K G+ +++ V NSLI++Y G++ + +F +M
Sbjct: 226 AVVPALSNVGKILIGEALHGYCEKEGLVWDVRVGNSLIDLYAKIGSIQNSLRVFDEMLDR 285
Query: 151 RDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREM 210
R+L+SW SI+ SG++ G +++LF +M
Sbjct: 286 RNLVSWTSII-------------------------------SGFAMHGLSVKAVELFADM 314
Query: 211 MKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTV-RTSLKPNIILDTALIDLYSKCQK 269
++G R N T SVL AC +G + + ++ P++ +ID+ + +
Sbjct: 315 RRAGIRPNRITFLSVLHACSHGGLVEQGVAFFKSMIYEYNINPDVKHFGCIIDMLGRAGR 374
Query: 270 VEVAQRVF-DSMADRNLVCWNAMILGHCI-HGKPEEG 304
+ A+++ D + N W + LG C +G+ E G
Sbjct: 375 LREAEQIIRDFPVEVNATVWRTL-LGCCSKYGEVEMG 410
Score = 62.8 bits (151), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 52/196 (26%), Positives = 81/196 (41%), Gaps = 45/196 (22%)
Query: 172 AHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASV--LTAC 229
AH++FD P W+ ++ YS +P +L+LFR + + D T A L AC
Sbjct: 47 AHQVFDRRP----TPWHALLKAYSHGPHPQDALQLFRH---ARWHAADDTYAFTFALKAC 99
Query: 230 GRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKC---------------------- 267
+HG VR + + TAL+++Y C
Sbjct: 100 AGLGWPRCCMQLHGLVVRKGFEFQTYVHTALVNVYILCGCLADSRMAFEEMPVKNAVSWN 159
Query: 268 ---------QKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAG 318
+VE A+ +F+ M RN+V W+ MI G+ +P E + LF ++
Sbjct: 160 VVITGFAGWGEVEYARLLFERMPCRNVVSWSGMIDGYTRACRPVEAVALFRRMM-----A 214
Query: 319 GSISPDEITFIGVICA 334
ISP EIT + V+ A
Sbjct: 215 EGISPSEITVLAVVPA 230
>gi|347954488|gb|AEP33744.1| chloroplast biogenesis 19, partial [Aethionema grandiflorum]
Length = 413
Score = 229 bits (585), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 132/399 (33%), Positives = 210/399 (52%), Gaps = 14/399 (3%)
Query: 82 GFMPNSYTFVSLFGSCAK--TGCVERGGMCHGLALKNGVD-FELPVMNSLINMYGCFGAM 138
GF PN TF++L C TG G + HG A K G+D + V +++ MY
Sbjct: 12 GFEPNHITFIALISGCGDFPTGSETLGDLLHGYACKLGLDRTHVMVGTAILGMYSKRCRF 71
Query: 139 DCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSG 198
AR +F M ++ ++WN+++ ++RSG + A +LFD MP+ +++SW MI+G+ K G
Sbjct: 72 GKARCVFDYMEDKNSVTWNTMIDAYMRSGKVDRAVKLFDEMPDPDLISWTAMINGFVKKG 131
Query: 199 NPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDT 258
+L FREM SG + + + + L AC + G VH Y + K N+ ++
Sbjct: 132 FHEEALVWFREMQISGVKPDYVAIIAALAACTNLGALSFGLWVHRYVLSQDFKNNVRVNN 191
Query: 259 ALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAG 318
+LIDLY +C VE A+ VFD M R +V WN++I+G +G E + F +
Sbjct: 192 SLIDLYCRCGCVEFAREVFDKMEKRTVVSWNSVIVGSAANGNAHESLVYFRKMQE----- 246
Query: 319 GSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTE 378
+PD +TF G + AC L+ EG +YF+ M YKI P HY C+ +LY+ A E
Sbjct: 247 EGFNPDAVTFTGALTACSHVGLVEEGIQYFQTMKRDYKISPRIEHYGCLVDLYSRAGRLE 306
Query: 379 EAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQG-AVAMVERLAKSFVDMDPQDFSRYQF 437
+A ++++ M +M ++ SLL+ CR G + ERL K +M+ + S Y
Sbjct: 307 DALKLVQSM-----SMKPNEVVIGSLLAACRTHGNNTELAERLMKHLSEMNVKGHSNYVI 361
Query: 438 LLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLKE 476
L N+YA G+WE ++R MK + + PG +++ +
Sbjct: 362 LSNMYAADGKWEGAXKMRRKMKGLGLKKQPGFSSIEIDD 400
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 80/354 (22%), Positives = 137/354 (38%), Gaps = 72/354 (20%)
Query: 35 GSPDYTVLVFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLF 94
G D V +F + +P A+I + ++ +V++ +M +G P+ ++
Sbjct: 100 GKVDRAVKLFDEMPDPDLISWTAMINGFVKKGFHEEALVWFREMQISGVKPDYVAIIAAL 159
Query: 95 GSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLI 154
+C G + G H L + V NSLI++Y G ++ AR +F +M R ++
Sbjct: 160 AACTNLGALSFGLWVHRYVLSQDFKNNVRVNNSLIDLYCRCGCVEFAREVFDKMEKRTVV 219
Query: 155 SWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSG 214
SWNS++ G +G+ AHE SL FR+M + G
Sbjct: 220 SWNSVIVGSAANGN---AHE----------------------------SLVYFRKMQEEG 248
Query: 215 FRGNDKTMASVLTACGRSARFNEGRSVHGYTVRT-SLKPNIILDTALIDLYSKCQKVEVA 273
F + T LTAC EG R + P I L+DLYS+ ++E A
Sbjct: 249 FNPDAVTFTGALTACSHVGLVEEGIQYFQTMKRDYKISPRIEHYGCLVDLYSRAGRLEDA 308
Query: 274 QRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVIC 333
++ SM S+ P+E+ ++
Sbjct: 309 LKLVQSM---------------------------------------SMKPNEVVIGSLLA 329
Query: 334 ACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKM 387
AC TE + + + +K + ++Y ++N+YA E A ++ RKM
Sbjct: 330 ACRTHGNNTELAERLMKHLSEMNVKGH-SNYVILSNMYAADGKWEGAXKMRRKM 382
Score = 41.2 bits (95), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 37/188 (19%), Positives = 79/188 (42%), Gaps = 6/188 (3%)
Query: 35 GSPDYTVLVFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLF 94
G ++ VF + N+VI + + + +V++ +M + GF P++ TF
Sbjct: 201 GCVEFAREVFDKMEKRTVVSWNSVIVGSAANGNAHESLVYFRKMQEEGFNPDAVTFTGAL 260
Query: 95 GSCAKTGCVERG-GMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMS--PR 151
+C+ G VE G + + + L+++Y G ++ A + MS P
Sbjct: 261 TACSHVGLVEEGIQYFQTMKRDYKISPRIEHYGCLVDLYSRAGRLEDALKLVQSMSMKPN 320
Query: 152 DLISWNSIVSGHVRSGDMSAAHELFDIMPERNV---VSWNIMISGYSKSGNPGCSLKLFR 208
+++ + + + + A L + E NV ++ I+ + Y+ G + K+ R
Sbjct: 321 EVVIGSLLAACRTHGNNTELAERLMKHLSEMNVKGHSNYVILSNMYAADGKWEGAXKMRR 380
Query: 209 EMMKSGFR 216
+M G +
Sbjct: 381 KMKGLGLK 388
>gi|224079057|ref|XP_002305733.1| predicted protein [Populus trichocarpa]
gi|222848697|gb|EEE86244.1| predicted protein [Populus trichocarpa]
Length = 571
Score = 229 bits (585), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 130/460 (28%), Positives = 230/460 (50%), Gaps = 42/460 (9%)
Query: 26 NLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMP 85
LL A G D +LVF ++ ++I AY+ + D+ + + +M + G P
Sbjct: 38 TLLDMYAKCGVLDGAILVFDLMSVRTVVTWTSLIAAYAREGLSDEAIRLFHEMDREGVSP 97
Query: 86 NSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMF 145
+ +T ++ +CA G +E G H +N + + V N+L++MY G+M+ A ++F
Sbjct: 98 DIFTITTVLHACACNGSLENGKDVHNYIRENDMQSNIFVCNALMDMYAKCGSMEDANSVF 157
Query: 146 VQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLK 205
++ MP ++++SWN MI GYSK+ P +L
Sbjct: 158 LE-------------------------------MPVKDIISWNTMIGGYSKNSLPNEALS 186
Query: 206 LFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYS 265
LF +M+ + + T+A +L AC A + G+ VHG+ +R + + AL+D+Y
Sbjct: 187 LFGDMVLE-MKPDGTTLACILPACASLASLDRGKEVHGHILRNGFFSDQQVANALVDMYV 245
Query: 266 KCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDE 325
KC +A+ +FD + ++L+ W MI G+ +HG I F + I PDE
Sbjct: 246 KCGVPVLARLLFDMIPTKDLITWTVMIAGYGMHGFGNNAITTFNEMRQ-----AGIEPDE 300
Query: 326 ITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILR 385
++FI ++ AC + LL EG ++F M D +KP HY C+ +L A + A + ++
Sbjct: 301 VSFISILYACSHSGLLDEGWRFFNVMQDECNVKPKLEHYACIVDLLARSGKLAMAYKFIK 360
Query: 386 KMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVA 445
MP + D + +W +LLS CR V + E++A+ +++P++ Y L N YA A
Sbjct: 361 SMPIEPD-----ATIWGALLSGCRIHHDVKLAEKVAEHVFELEPENTGYYVLLANTYAEA 415
Query: 446 GQWEDVARVRELMKKRRMGRMPGCRLVDLKEVVEKLKVGH 485
+WE+V ++R+ + +R + + PGC +++K V G+
Sbjct: 416 EKWEEVKKLRQKIGRRGLKKNPGCSWIEVKSKVHIFLAGN 455
Score = 115 bits (288), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 72/256 (28%), Positives = 117/256 (45%), Gaps = 37/256 (14%)
Query: 91 VSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSP 150
VS+ +CA G V G HG +K V ++ N+L++MY G +D
Sbjct: 2 VSILQACANCGDVSLGRAVHGSGVKACVHWKTTFCNTLLDMYAKCGVLD----------- 50
Query: 151 RDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREM 210
A +FD+M R VV+W +I+ Y++ G +++LF EM
Sbjct: 51 --------------------GAILVFDLMSVRTVVTWTSLIAAYAREGLSDEAIRLFHEM 90
Query: 211 MKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKV 270
+ G + T+ +VL AC + G+ VH Y ++ NI + AL+D+Y+KC +
Sbjct: 91 DREGVSPDIFTITTVLHACACNGSLENGKDVHNYIRENDMQSNIFVCNALMDMYAKCGSM 150
Query: 271 EVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIG 330
E A VF M ++++ WN MI G+ + P E + LF +V + PD T
Sbjct: 151 EDANSVFLEMPVKDIISWNTMIGGYSKNSLPNEALSLFGDMVL------EMKPDGTTLAC 204
Query: 331 VICACVRAELLTEGRK 346
++ AC L G++
Sbjct: 205 ILPACASLASLDRGKE 220
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 48/170 (28%), Positives = 78/170 (45%), Gaps = 12/170 (7%)
Query: 222 MASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMA 281
M S+L AC + GR+VHG V+ + L+D+Y+KC ++ A VFD M+
Sbjct: 1 MVSILQACANCGDVSLGRAVHGSGVKACVHWKTTFCNTLLDMYAKCGVLDGAILVFDLMS 60
Query: 282 DRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELL 341
R +V W ++I + G +E I+LF + +SPD T V+ AC L
Sbjct: 61 VRTVVTWTSLIAAYAREGLSDEAIRLFHEMDR-----EGVSPDIFTITTVLHACACNGSL 115
Query: 342 TEGR---KYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMP 388
G+ Y R+ ++ N + ++YA E+A + +MP
Sbjct: 116 ENGKDVHNYIRE----NDMQSNIFVCNALMDMYAKCGSMEDANSVFLEMP 161
>gi|357118977|ref|XP_003561223.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g02750-like [Brachypodium distachyon]
Length = 604
Score = 229 bits (585), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 136/436 (31%), Positives = 230/436 (52%), Gaps = 51/436 (11%)
Query: 77 QMIKNGFMPNSYTFVSLFGSCAKTGCVERGG-MCHGLALKNGVDFELPVMNSLINMYGCF 135
++I + P++ T+ +L +C ++G + + + ++ V + NS+++ Y
Sbjct: 144 RLIADIPRPDTVTWNTLLRACLRSGLLPSARRLFDQMPHRDLVSY-----NSMLSSYAAV 198
Query: 136 GAMDCARNMFVQMSPRDLISWNSIVSGHVRSG-DMSAAHELFDIMPERNVVSWNIMISGY 194
G M A +F +M RD+++WN++++G+ R G DM++A +FD MPER+VVSWN M+ GY
Sbjct: 199 GDMAGAGRLFDEMPERDVVTWNTMLAGYARGGADMASARAVFDAMPERDVVSWNSMLDGY 258
Query: 195 SKSGN-----------PGCS--------------------LKLFREMMKSGFR-GNDKTM 222
+++G+ P S L+LF MM G N+KT
Sbjct: 259 AQAGDVVMAWAMFDGMPRRSAASWNVVLALYARRKDWRECLRLFDAMMAVGVSVPNEKTF 318
Query: 223 ASVLTACGRSARFNEGRSVHGYTVR--TSLKPNIILDTALIDLYSKCQKVEVAQRVFDSM 280
SVLTACG G+ VHG L P+++L TAL+ +Y+KC +E A+ +FDSM
Sbjct: 319 VSVLTACGSLGDLERGKWVHGLVRERWDRLVPDVLLLTALLTMYAKCGAMETAREIFDSM 378
Query: 281 ADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAEL 340
++R++ WN+MI+G+ +HG+ E+ ++LF + P+E TFI V+ +C L
Sbjct: 379 SERSVPSWNSMIIGYGLHGQSEKALELFLEMEK-----SGPRPNETTFICVLSSCAHGGL 433
Query: 341 LTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIM 400
+ EG F +M+ FY +P H+ CM +L A L +++E +++ N +
Sbjct: 434 VLEGWWCFDRMVRFYGFEPKAEHFGCMMDLLGRAGLLKDSENLIQ-----NLQGKASPAL 488
Query: 401 WVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKK 460
W ++S + Q + E + K ++M P +F Y L N+YA G+W DV +VRE+MK+
Sbjct: 489 WGIMMSASQTQNNYKLGEFVGKKLIEMKPAEFGPYLLLSNIYASEGRWGDVEKVREVMKE 548
Query: 461 RRMGRMPGCRLVDLKE 476
+ G L+ E
Sbjct: 549 NGAEKYVGLSLIGSSE 564
Score = 104 bits (260), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 79/285 (27%), Positives = 138/285 (48%), Gaps = 19/285 (6%)
Query: 110 HGLALKNG-VDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGD 168
H LA++ G + +L + NSL+++Y GA AR + + D ++WN+++ +RSG
Sbjct: 110 HALAVRAGHLPADLRLANSLLSIYLSLGAASSARRLIADIPRPDTVTWNTLLRACLRSGL 169
Query: 169 MSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTA 228
+ +A LFD MP R++VS+N M+S Y+ G+ + +LF EM + + T ++L
Sbjct: 170 LPSARRLFDQMPHRDLVSYNSMLSSYAAVGDMAGAGRLFDEMPER----DVVTWNTMLAG 225
Query: 229 CGR-SARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVC 287
R A R+V +++ +++D Y++ V +A +FD M R+
Sbjct: 226 YARGGADMASARAVFDAMPER----DVVSWNSMLDGYAQAGDVVMAWAMFDGMPRRSAAS 281
Query: 288 WNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGR-- 345
WN ++ + E ++LF A+ +A G P+E TF+ V+ AC L G+
Sbjct: 282 WNVVLALYARRKDWRECLRLFDAM----MAVGVSVPNEKTFVSVLTACGSLGDLERGKWV 337
Query: 346 -KYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPE 389
R+ D ++ P+ + +YA E A EI M E
Sbjct: 338 HGLVRERWD--RLVPDVLLLTALLTMYAKCGAMETAREIFDSMSE 380
>gi|297610920|ref|NP_001065364.2| Os10g0558600 [Oryza sativa Japonica Group]
gi|255679629|dbj|BAF27201.2| Os10g0558600 [Oryza sativa Japonica Group]
Length = 863
Score = 229 bits (585), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 127/461 (27%), Positives = 232/461 (50%), Gaps = 44/461 (9%)
Query: 42 LVFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTG 101
L+F+ + + NA+I A + D ++ + +M++ G P+ +T+ S+ +CA
Sbjct: 407 LIFQGMKQKDSVSWNAIIAALEQNGHYDDTILHFNEMLRFGMKPDDFTYGSVLKACAALR 466
Query: 102 CVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVS 161
+E G M H +K+G+ + V +++++MY
Sbjct: 467 SLEYGLMVHDKVIKSGLGSDAFVASTVVDMY----------------------------- 497
Query: 162 GHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKT 221
+ G + A +L D + + VVSWN ++SG+S + + K F EM+ G + + T
Sbjct: 498 --CKCGIIDEAQKLHDRIGGQQVVSWNAILSGFSLNKESEEAQKFFSEMLDMGLKPDHFT 555
Query: 222 MASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMA 281
A+VL C A G+ +HG ++ + + + + L+D+Y+KC + + VF+ +
Sbjct: 556 FATVLDTCANLATIELGKQIHGQIIKQEMLDDEYISSTLVDMYAKCGDMPDSLLVFEKVE 615
Query: 282 DRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELL 341
R+ V WNAMI G+ +HG E +++F + V P+ TF+ V+ AC L
Sbjct: 616 KRDFVSWNAMICGYALHGLGVEALRMFERMQKENVV-----PNHATFVAVLRACSHVGLF 670
Query: 342 TEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMW 401
+G +YF M YK++P H+ CM ++ ++ +EA + + MP D +++W
Sbjct: 671 DDGCRYFHLMTTHYKLEPQLEHFACMVDILGRSKGPQEAVKFINSMPFQAD-----AVIW 725
Query: 402 VSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKR 461
+LLS+C+ + V + E A + + +DP D S Y L NVYA +G+W DV+R R L+K+
Sbjct: 726 KTLLSICKIRQDVEIAELAASNVLLLDPDDSSVYILLSNVYAESGKWADVSRTRRLLKQG 785
Query: 462 RMGRMPGCRLVDLKEVVEKLKVG---HFWRGGMKEEVNKMM 499
R+ + PGC ++++ + VG H G + E +N ++
Sbjct: 786 RLKKEPGCSWIEVQSEMHGFLVGDKAHPRSGELYEMLNDLI 826
Score = 126 bits (316), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 96/324 (29%), Positives = 151/324 (46%), Gaps = 12/324 (3%)
Query: 85 PNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELP---VMNSLINMYGCFGAMDCA 141
P TF +F SCA+ G E + V +P V N L+ MY CA
Sbjct: 13 PARVTFSRVFQSCAQAG-REALAAGRAAHARMVVSGFVPTAFVSNCLLQMYARCAGAACA 71
Query: 142 RNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPG 201
R +F M RD +SWN++++ + +GD+S A LFD MP+ +VVSWN ++SGY + G
Sbjct: 72 RRVFDAMPRRDTVSWNTMLTAYSHAGDISTAVALFDGMPDPDVVSWNALVSGYCQRGMFQ 131
Query: 202 CSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALI 261
S+ LF EM + G + T A +L +C + G VH V+T L+ ++ +AL+
Sbjct: 132 ESVDLFVEMARRGVSPDRTTFAVLLKSCSALEELSLGVQVHALAVKTGLEIDVRTGSALV 191
Query: 262 DLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSI 321
D+Y KC+ ++ A F M +RN V W A I G + + G++LF + + G
Sbjct: 192 DMYGKCRSLDDALCFFYGMPERNWVSWGAAIAGCVQNEQYVRGLELFIEMQR--LGLGVS 249
Query: 322 SPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAE 381
P ++ +C L GR+ I K + + ++YA A +A
Sbjct: 250 QP---SYASAFRSCAAMSCLNTGRQLHAHAIK-NKFSSDRVVGTAIVDVYAKANSLTDAR 305
Query: 382 EILRKMPEDNDNMSFESIMWVSLL 405
+P N + + M V L+
Sbjct: 306 RAFFGLP--NHTVETSNAMMVGLV 327
Score = 117 bits (293), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 92/376 (24%), Positives = 168/376 (44%), Gaps = 51/376 (13%)
Query: 30 HSADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYT 89
H+ D + V +F + +P NA++ Y + + V +++M + G P+ T
Sbjct: 95 HAGDIST---AVALFDGMPDPDVVSWNALVSGYCQRGMFQESVDLFVEMARRGVSPDRTT 151
Query: 90 FVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMS 149
F L SC+ + G H LA+K G++ ++ ++L++MYG ++D A F M
Sbjct: 152 FAVLLKSCSALEELSLGVQVHALAVKTGLEIDVRTGSALVDMYGKCRSLDDALCFFYGMP 211
Query: 150 PRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFRE 209
R+ +SW + ++G V++ E+ V L+LF E
Sbjct: 212 ERNWVSWGAAIAGCVQN--------------EQYVR-----------------GLELFIE 240
Query: 210 MMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQK 269
M + G + + AS +C + N GR +H + ++ + ++ TA++D+Y+K
Sbjct: 241 MQRLGLGVSQPSYASAFRSCAAMSCLNTGRQLHAHAIKNKFSSDRVVGTAIVDVYAKANS 300
Query: 270 VEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFI 329
+ A+R F + + + NAM++G G E + LF ++ SI D ++
Sbjct: 301 LTDARRAFFGLPNHTVETSNAMMVGLVRAGLGIEAMGLFQFMIR-----SSIRFDVVSLS 355
Query: 330 GVICACVRAELLTEGRKYFR-QMIDFYKIKPNFAHYWCMAN----LYAGAELTEEAEEIL 384
GV AC E + YF+ Q + IK F C+ N LY + EA I
Sbjct: 356 GVFSAC------AETKGYFQGQQVHCLAIKSGFDVDICVNNAVLDLYGKCKALMEAYLIF 409
Query: 385 RKMPEDNDNMSFESIM 400
+ M + D++S+ +I+
Sbjct: 410 QGMKQ-KDSVSWNAII 424
Score = 115 bits (288), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 76/322 (23%), Positives = 150/322 (46%), Gaps = 49/322 (15%)
Query: 32 ADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFV 91
A FG P++TV NA++ + + + + + MI++ + +
Sbjct: 307 AFFGLPNHTVET-----------SNAMMVGLVRAGLGIEAMGLFQFMIRSSIRFDVVSLS 355
Query: 92 SLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYG-CFGAMDCARNMFVQMSP 150
+F +CA+T +G H LA+K+G D ++ V N+++++YG C M+
Sbjct: 356 GVFSACAETKGYFQGQQVHCLAIKSGFDVDICVNNAVLDLYGKCKALME----------- 404
Query: 151 RDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREM 210
A+ +F M +++ VSWN +I+ ++G+ ++ F EM
Sbjct: 405 ---------------------AYLIFQGMKQKDSVSWNAIIAALEQNGHYDDTILHFNEM 443
Query: 211 MKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKV 270
++ G + +D T SVL AC G VH +++ L + + + ++D+Y KC +
Sbjct: 444 LRFGMKPDDFTYGSVLKACAALRSLEYGLMVHDKVIKSGLGSDAFVASTVVDMYCKCGII 503
Query: 271 EVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIG 330
+ AQ++ D + + +V WNA++ G ++ + EE K F+ +++ + PD TF
Sbjct: 504 DEAQKLHDRIGGQQVVSWNAILSGFSLNKESEEAQKFFSEMLD-----MGLKPDHFTFAT 558
Query: 331 VICACVRAELLTEGRKYFRQMI 352
V+ C + G++ Q+I
Sbjct: 559 VLDTCANLATIELGKQIHGQII 580
Score = 93.2 bits (230), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 61/275 (22%), Positives = 124/275 (45%), Gaps = 36/275 (13%)
Query: 70 QGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLI 129
+G+ +++M + G + ++ S F SCA C+ G H A+KN + V +++
Sbjct: 233 RGLELFIEMQRLGLGVSQPSYASAFRSCAAMSCLNTGRQLHAHAIKNKFSSDRVVGTAIV 292
Query: 130 NMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNI 189
++Y ++ ++ A F +P V + N
Sbjct: 293 DVYA-------------------------------KANSLTDARRAFFGLPNHTVETSNA 321
Query: 190 MISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTS 249
M+ G ++G ++ LF+ M++S R + +++ V +AC + + +G+ VH +++
Sbjct: 322 MMVGLVRAGLGIEAMGLFQFMIRSSIRFDVVSLSGVFSACAETKGYFQGQQVHCLAIKSG 381
Query: 250 LKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFT 309
+I ++ A++DLY KC+ + A +F M ++ V WNA+I +G ++ I F
Sbjct: 382 FDVDICVNNAVLDLYGKCKALMEAYLIFQGMKQKDSVSWNAIIAALEQNGHYDDTILHFN 441
Query: 310 ALVNGTVAGGSISPDEITFIGVICACVRAELLTEG 344
++ + PD+ T+ V+ AC L G
Sbjct: 442 EMLR-----FGMKPDDFTYGSVLKACAALRSLEYG 471
>gi|449506393|ref|XP_004162737.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g77170-like [Cucumis sativus]
Length = 614
Score = 229 bits (585), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 122/426 (28%), Positives = 223/426 (52%), Gaps = 43/426 (10%)
Query: 48 NNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGG 107
N+P +F N +I++Y+ VP + Y+ M++ G +P+ YT +F + + + G
Sbjct: 225 NHPSSFYWNIIIRSYTRLEVPRIALFVYIAMLQAGILPDCYTLPIVFKALSLAYAFDLGL 284
Query: 108 MCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSG 167
H +A++ G +F+ + LI++Y G ++C
Sbjct: 285 QLHSVAIRLGFEFDQYSESGLISLYSKIGDLEC--------------------------- 317
Query: 168 DMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLT 227
A ++F+ R + SWN +I+G S+ G ++ +F ++ +SG +D T+ SV +
Sbjct: 318 ----ACKVFEQNHNRKLGSWNAIIAGLSQGGRAKEAVNMFIKLRQSGLEPDDFTIVSVTS 373
Query: 228 ACGRSARFNEGRSVHGYT--VRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNL 285
ACG +H + V+ + K NI++ +LID+Y KC ++++A +VF +M RN+
Sbjct: 374 ACGSLGNLELSLQMHKFVFQVKVTGKSNILMLNSLIDMYGKCGRMDLAMKVFSNMGHRNV 433
Query: 286 VCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGR 345
W ++I+G+ +HG+ ++ ++ F + V P+++TF+GV+ ACV ++ EG+
Sbjct: 434 SSWTSLIVGYAMHGQVKQALENFQFMREAGVP-----PNQVTFVGVLSACVHGGMINEGK 488
Query: 346 KYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLL 405
YF M + Y KP HY CM +L + A L EEA ++ +MP M SI+W L+
Sbjct: 489 HYFDMMKNVYGFKPQLPHYGCMVDLLSKAGLLEEARRMIEEMP-----MKANSIIWGCLI 543
Query: 406 SLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGR 465
C G V + E K +++P + Y L N+YA G W++ ++R++MK+R++ +
Sbjct: 544 GGCEKHGNVEIGEWAGKHLQELEPWNDGVYVVLSNIYATNGMWKEAQKMRDVMKQRQLAK 603
Query: 466 MPGCRL 471
+PG L
Sbjct: 604 VPGYSL 609
Score = 88.2 bits (217), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 79/310 (25%), Positives = 130/310 (41%), Gaps = 48/310 (15%)
Query: 5 LQIQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSN 64
LQ+ + I G F+ + L+ + G + VF+ +N NA+I S
Sbjct: 284 LQLHSVAIRLGFEFD-QYSESGLISLYSKIGDLECACKVFEQNHNRKLGSWNAIIAGLSQ 342
Query: 65 SCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFE--L 122
+ V ++++ ++G P+ +T VS+ +C G +E H + V + +
Sbjct: 343 GGRAKEAVNMFIKLRQSGLEPDDFTIVSVTSACGSLGNLELSLQMHKFVFQVKVTGKSNI 402
Query: 123 PVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPER 182
++NSLI+MYG G MD A +F M R++ SW S++ G+ G + A E F M E
Sbjct: 403 LMLNSLIDMYGKCGRMDLAMKVFSNMGHRNVSSWTSLIVGYAMHGQVKQALENFQFMRE- 461
Query: 183 NVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEG---- 238
+G N T VL+AC NEG
Sbjct: 462 ------------------------------AGVPPNQVTFVGVLSACVHGGMINEGKHYF 491
Query: 239 ---RSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADR-NLVCWNAMILG 294
++V+G+ KP + ++DL SK +E A+R+ + M + N + W +I G
Sbjct: 492 DMMKNVYGF------KPQLPHYGCMVDLLSKAGLLEEARRMIEEMPMKANSIIWGCLIGG 545
Query: 295 HCIHGKPEEG 304
HG E G
Sbjct: 546 CEKHGNVEIG 555
>gi|15228064|ref|NP_181235.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75206293|sp|Q9SJK9.1|PP189_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At2g36980, mitochondrial; Flags: Precursor
gi|4883614|gb|AAD31583.1| hypothetical protein [Arabidopsis thaliana]
gi|330254236|gb|AEC09330.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 625
Score = 229 bits (585), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 132/455 (29%), Positives = 229/455 (50%), Gaps = 14/455 (3%)
Query: 53 FCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSC-AKTGCVERGGMCHG 111
F N +I +++ + + + +M+++ F P+ YTF SL +C A + V G M H
Sbjct: 170 FAWNIMISGHAHCGKLESCLSLFKEMLESEFKPDCYTFSSLMNACSADSSNVVYGRMVHA 229
Query: 112 LALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSA 171
+ LKNG + NS+++ Y G+ D A + +SWNSI+ ++ G+
Sbjct: 230 VMLKNGWSSAVEAKNSVLSFYTKLGSRDDAMRELESIEVLTQVSWNSIIDACMKIGETEK 289
Query: 172 AHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGR 231
A E+F + PE+N+V+W MI+GY ++G+ +L+ F EMMKSG + +VL AC
Sbjct: 290 ALEVFHLAPEKNIVTWTTMITGYGRNGDGEQALRFFVEMMKSGVDSDHFAYGAVLHACSG 349
Query: 232 SARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAM 291
A G+ +HG + + + AL++LY+KC ++ A R F +A+++LV WN M
Sbjct: 350 LALLGHGKMIHGCLIHCGFQGYAYVGNALVNLYAKCGDIKEADRAFGDIANKDLVSWNTM 409
Query: 292 ILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQM 351
+ +HG ++ +KL+ + +A G I PD +TFIG++ C + L+ EG F M
Sbjct: 410 LFAFGVHGLADQALKLY----DNMIASG-IKPDNVTFIGLLTTCSHSGLVEEGCMIFESM 464
Query: 352 IDFYKIKPNFAHYWCMANLYAGAELTEEAEEI---LRKMPEDNDNMSFESIMWVSLLSLC 408
+ Y+I H CM +++ EA+++ + D+ N S W +LL C
Sbjct: 465 VKDYRIPLEVDHVTCMIDMFGRGGHLAEAKDLATTYSSLVTDSSNNS----SWETLLGAC 520
Query: 409 RFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPG 468
+ ++K +P + + L N+Y G+W++ VR M +R M + PG
Sbjct: 521 STHWHTELGREVSKVLKIAEPSEEMSFVLLSNLYCSTGRWKEGEDVRREMVERGMKKTPG 580
Query: 469 CRLVDLKEVVEKLKVGHFWRGGMKEEVNKMMECRQ 503
C +++ V VG + EE+++ + C Q
Sbjct: 581 CSWIEVGNQVSTFVVGDSSHPRL-EELSETLNCLQ 614
Score = 130 bits (327), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 98/377 (25%), Positives = 167/377 (44%), Gaps = 48/377 (12%)
Query: 43 VFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGC 102
VF + T N ++ +YS + + + + Q+ + P+ Y+F ++ +CA G
Sbjct: 26 VFDGMPELDTVAWNTMLTSYSRLGLHQEAIALFTQLRFSDAKPDDYSFTAILSTCASLGN 85
Query: 103 VERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQM--SPRDLISWNSIV 160
V+ G L +++G LPV NSLI+MYG A +F M R+ ++W S++
Sbjct: 86 VKFGRKIQSLVIRSGFCASLPVNNSLIDMYGKCSDTLSANKVFRDMCCDSRNEVTWCSLL 145
Query: 161 SGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDK 220
++ + AA ++F MP+R +WNIMISG++ G L LF+EM++S F+ +
Sbjct: 146 FAYMNAEQFEAALDVFVEMPKRVAFAWNIMISGHAHCGKLESCLSLFKEMLESEFKPDCY 205
Query: 221 TMASVLTAC-GRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSK------------- 266
T +S++ AC S+ GR VH ++ + +++ Y+K
Sbjct: 206 TFSSLMNACSADSSNVVYGRMVHAVMLKNGWSSAVEAKNSVLSFYTKLGSRDDAMRELES 265
Query: 267 ---------------CQKV---EVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLF 308
C K+ E A VF ++N+V W MI G+ +G E+ ++ F
Sbjct: 266 IEVLTQVSWNSIIDACMKIGETEKALEVFHLAPEKNIVTWTTMITGYGRNGDGEQALRFF 325
Query: 309 TALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYW--- 365
++ + D + V+ AC LL G+ MI I F Y
Sbjct: 326 VEMMK-----SGVDSDHFAYGAVLHACSGLALLGHGK-----MIHGCLIHCGFQGYAYVG 375
Query: 366 -CMANLYAGAELTEEAE 381
+ NLYA +EA+
Sbjct: 376 NALVNLYAKCGDIKEAD 392
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 55/216 (25%), Positives = 95/216 (43%), Gaps = 38/216 (17%)
Query: 153 LISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMK 212
L+ S ++ +SG +++A ++FD MPE + V+WN M++ YS+ G ++ LF ++
Sbjct: 4 LVRLTSKIASLAKSGRIASARQVFDGMPELDTVAWNTMLTSYSRLGLHQEAIALFTQLRF 63
Query: 213 SGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKC----- 267
S + +D + ++L+ C GR + +R+ ++ ++ +LID+Y KC
Sbjct: 64 SDAKPDDYSFTAILSTCASLGNVKFGRKIQSLVIRSGFCASLPVNNSLIDMYGKCSDTLS 123
Query: 268 ----------------------------QKVEVAQRVFDSMADRNLVCWNAMILGHCIHG 299
++ E A VF M R WN MI GH G
Sbjct: 124 ANKVFRDMCCDSRNEVTWCSLLFAYMNAEQFEAALDVFVEMPKRVAFAWNIMISGHAHCG 183
Query: 300 KPEEGIKLFTALVNGTVAGGSISPDEITFIGVICAC 335
K E + LF ++ PD TF ++ AC
Sbjct: 184 KLESCLSLFKEMLE-----SEFKPDCYTFSSLMNAC 214
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 49/234 (20%), Positives = 94/234 (40%), Gaps = 32/234 (13%)
Query: 34 FGSPDYTVLVFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSL 93
G + + VF +I Y + +Q + F+++M+K+G + + + ++
Sbjct: 284 IGETEKALEVFHLAPEKNIVTWTTMITGYGRNGDGEQALRFFVEMMKSGVDSDHFAYGAV 343
Query: 94 FGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDL 153
+C+ + G M HG + G V N+L+N+Y G + A F ++ +DL
Sbjct: 344 LHACSGLALLGHGKMIHGCLIHCGFQGYAYVGNALVNLYAKCGDIKEADRAFGDIANKDL 403
Query: 154 ISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKS 213
+SWN+ M+ + G +LKL+ M+ S
Sbjct: 404 VSWNT-------------------------------MLFAFGVHGLADQALKLYDNMIAS 432
Query: 214 GFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKP-NIILDTALIDLYSK 266
G + ++ T +LT C S EG + V+ P + T +ID++ +
Sbjct: 433 GIKPDNVTFIGLLTTCSHSGLVEEGCMIFESMVKDYRIPLEVDHVTCMIDMFGR 486
>gi|356541109|ref|XP_003539025.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g18840-like [Glycine max]
Length = 681
Score = 229 bits (584), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 120/417 (28%), Positives = 219/417 (52%), Gaps = 14/417 (3%)
Query: 56 NAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALK 115
N +I YS + ++ + F+++MI+NG N +T S+ +C+ C + G H LK
Sbjct: 221 NTLIAGYSQNGYMEKSLTFFVEMIENGIDFNEHTLASVLNACSALKCSKLGKSVHAWVLK 280
Query: 116 NGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHEL 175
G + + +++ Y G + A ++ ++ + + S+++ + G+M+ A L
Sbjct: 281 KGYSSNQFISSGVVDFYSKCGNIRYAELVYAKIGIKSPFAVASLIAAYSSQGNMTEAQRL 340
Query: 176 FDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREM-MKSGFRGNDKTMASVLTACGRSAR 234
FD + ERN V W + SGY KS KLFRE K + + S+L AC A
Sbjct: 341 FDSLLERNSVVWTALCSGYVKSQQCEAVFKLFREFRTKEALVPDAMIIVSILGACAIQAD 400
Query: 235 FNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFD--SMADRNLVCWNAMI 292
+ G+ +H Y +R K + L ++L+D+YSKC V A+++F + +DR+ + +N +I
Sbjct: 401 LSLGKQIHAYILRMRFKVDKKLLSSLVDMYSKCGNVAYAEKLFRLVTDSDRDAILYNVII 460
Query: 293 LGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMI 352
G+ HG + I+LF ++N S+ PD +TF+ ++ AC L+ G ++F M
Sbjct: 461 AGYAHHGFENKAIELFQEMLN-----KSVKPDAVTFVALLSACRHRGLVELGEQFFMSM- 514
Query: 353 DFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQG 412
+ Y + P HY CM ++Y A E+A E +RK+P + ++ +W + L+ C+
Sbjct: 515 EHYNVLPEIYHYACMVDMYGRANQLEKAVEFMRKIP-----IKIDATIWGAFLNACQMSS 569
Query: 413 AVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGC 469
A+V++ + + ++ + SRY L N YA G+W+++ R+R+ M+ ++ GC
Sbjct: 570 DAALVKQAEEELLKVEADNGSRYVQLANAYAAKGKWDEMGRIRKKMRGHEAKKLAGC 626
Score = 131 bits (330), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 116/455 (25%), Positives = 195/455 (42%), Gaps = 83/455 (18%)
Query: 76 LQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCF 135
+Q ++ + T ++ AK + G H +K D ++SLI+MY
Sbjct: 107 MQSARDTIGIDEITLTNMLNLAAKLRVLCYGKQMHSYMVKTANDLSKFALSSLIDMYSKC 166
Query: 136 GAMDCARNMFVQMSPR-DLISWNSIVSGHVRSGDMSAAHELFDIMPE-RNVVSWNIMISG 193
G A N+F DL+S N++V+ R G M A +F PE ++ VSWN +I+G
Sbjct: 167 GCFQEACNLFGSCDEMVDLVSKNAMVAACCREGKMDMALNVFWKNPELKDTVSWNTLIAG 226
Query: 194 YSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPN 253
YS++G SL F EM+++G N+ T+ASVL AC G+SVH + ++ N
Sbjct: 227 YSQNGYMEKSLTFFVEMIENGIDFNEHTLASVLNACSALKCSKLGKSVHAWVLKKGYSSN 286
Query: 254 IILDTALIDLYSKCQKVEV-------------------------------AQRVFDSMAD 282
+ + ++D YSKC + AQR+FDS+ +
Sbjct: 287 QFISSGVVDFYSKCGNIRYAELVYAKIGIKSPFAVASLIAAYSSQGNMTEAQRLFDSLLE 346
Query: 283 RNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLT 342
RN V W A+ G+ + E KLF ++ PD + + ++ AC L+
Sbjct: 347 RNSVVWTALCSGYVKSQQCEAVFKLFREFRTKE----ALVPDAMIIVSILGACAIQADLS 402
Query: 343 EG---------------RKYFRQMIDFYKIKPNFAH-----------------YWCMANL 370
G +K ++D Y N A+ Y +
Sbjct: 403 LGKQIHAYILRMRFKVDKKLLSSLVDMYSKCGNVAYAEKLFRLVTDSDRDAILYNVIIAG 462
Query: 371 YAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMD-- 428
YA +A E+ ++M N ++ +++ +V+LLS CR +G V + E+ F+ M+
Sbjct: 463 YAHHGFENKAIELFQEML--NKSVKPDAVTFVALLSACRHRGLVELGEQF---FMSMEHY 517
Query: 429 ---PQDFSRYQFLLNVYAVAGQWEDVARVRELMKK 460
P+ + Y ++++Y A Q E + E M+K
Sbjct: 518 NVLPEIY-HYACMVDMYGRANQLE---KAVEFMRK 548
Score = 91.7 bits (226), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 60/205 (29%), Positives = 107/205 (52%), Gaps = 8/205 (3%)
Query: 110 HGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDM 169
H A+K+G+ + N LI++Y G + A +F +M ++ SWN+I+ ++++ ++
Sbjct: 6 HVQAIKSGLVSSIFTCNQLIHLYSNHGLLQEAHKLFDEMPHPNVFSWNAIIMAYIKAHNL 65
Query: 170 SAAHELFDIMPERNVVSWNIMISGYSKS-GNPGCSLKLFREMM--KSGFRGNDKTMASVL 226
+ A LFD R++VS+N ++S Y S G +L LF M + ++ T+ ++L
Sbjct: 66 TQARALFDSASHRDLVSYNSLLSAYVGSDGYETEALDLFTRMQSARDTIGIDEITLTNML 125
Query: 227 TACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVF---DSMADR 283
+ G+ +H Y V+T+ + ++LID+YSKC + A +F D M D
Sbjct: 126 NLAAKLRVLCYGKQMHSYMVKTANDLSKFALSSLIDMYSKCGCFQEACNLFGSCDEMVD- 184
Query: 284 NLVCWNAMILGHCIHGKPEEGIKLF 308
LV NAM+ C GK + + +F
Sbjct: 185 -LVSKNAMVAACCREGKMDMALNVF 208
>gi|222613253|gb|EEE51385.1| hypothetical protein OsJ_32436 [Oryza sativa Japonica Group]
Length = 863
Score = 229 bits (584), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 127/461 (27%), Positives = 232/461 (50%), Gaps = 44/461 (9%)
Query: 42 LVFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTG 101
L+F+ + + NA+I A + D ++ + +M++ G P+ +T+ S+ +CA
Sbjct: 407 LIFQGMKQKDSVSWNAIIAALEQNGHYDDTILHFNEMLRFGMKPDDFTYGSVLKACAALR 466
Query: 102 CVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVS 161
+E G M H +K+G+ + V +++++MY
Sbjct: 467 SLEYGLMVHDKVIKSGLGSDAFVASTVVDMY----------------------------- 497
Query: 162 GHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKT 221
+ G + A +L D + + VVSWN ++SG+S + + K F EM+ G + + T
Sbjct: 498 --CKCGIIDEAQKLHDRIGGQQVVSWNAILSGFSLNKESEEAQKFFSEMLDMGLKPDHFT 555
Query: 222 MASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMA 281
A+VL C A G+ +HG ++ + + + + L+D+Y+KC + + VF+ +
Sbjct: 556 FATVLDTCANLATIELGKQIHGQIIKQEMLDDEYISSTLVDMYAKCGDMPDSLLVFEKVE 615
Query: 282 DRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELL 341
R+ V WNAMI G+ +HG E +++F + V P+ TF+ V+ AC L
Sbjct: 616 KRDFVSWNAMICGYALHGLGVEALRMFERMQKENVV-----PNHATFVAVLRACSHVGLF 670
Query: 342 TEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMW 401
+G +YF M YK++P H+ CM ++ ++ +EA + + MP D +++W
Sbjct: 671 DDGCRYFHLMTTHYKLEPQLEHFACMVDILGRSKGPQEAVKFINSMPFQAD-----AVIW 725
Query: 402 VSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKR 461
+LLS+C+ + V + E A + + +DP D S Y L NVYA +G+W DV+R R L+K+
Sbjct: 726 KTLLSICKIRQDVEIAELAASNVLLLDPDDSSVYILLSNVYAESGKWADVSRTRRLLKQG 785
Query: 462 RMGRMPGCRLVDLKEVVEKLKVG---HFWRGGMKEEVNKMM 499
R+ + PGC ++++ + VG H G + E +N ++
Sbjct: 786 RLKKEPGCSWIEVQSEMHGFLVGDKAHPRSGELYEMLNDLI 826
Score = 125 bits (315), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 96/324 (29%), Positives = 151/324 (46%), Gaps = 12/324 (3%)
Query: 85 PNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELP---VMNSLINMYGCFGAMDCA 141
P TF +F SCA+ G E + V +P V N L+ MY CA
Sbjct: 13 PARVTFSRVFQSCAQAG-REALAAGRAAHARMVVSGFVPNAFVSNCLLQMYARCAGAACA 71
Query: 142 RNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPG 201
R +F M RD +SWN++++ + +GD+S A LFD MP+ +VVSWN ++SGY + G
Sbjct: 72 RRVFDAMPRRDTVSWNTMLTAYSHAGDISTAVALFDGMPDPDVVSWNALVSGYCQRGMFQ 131
Query: 202 CSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALI 261
S+ LF EM + G + T A +L +C + G VH V+T L+ ++ +AL+
Sbjct: 132 ESVDLFVEMARRGVSPDRTTFAVLLKSCSALEELSLGVQVHALAVKTGLEIDVRTGSALV 191
Query: 262 DLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSI 321
D+Y KC+ ++ A F M +RN V W A I G + + G++LF + + G
Sbjct: 192 DMYGKCRSLDDALCFFYGMPERNWVSWGAAIAGCVQNEQYVRGLELFIEMQR--LGLGVS 249
Query: 322 SPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAE 381
P ++ +C L GR+ I K + + ++YA A +A
Sbjct: 250 QP---SYASAFRSCAAMSCLNTGRQLHAHAIK-NKFSSDRVVGTAIVDVYAKANSLTDAR 305
Query: 382 EILRKMPEDNDNMSFESIMWVSLL 405
+P N + + M V L+
Sbjct: 306 RAFFGLP--NHTVETSNAMMVGLV 327
Score = 117 bits (293), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 92/376 (24%), Positives = 168/376 (44%), Gaps = 51/376 (13%)
Query: 30 HSADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYT 89
H+ D + V +F + +P NA++ Y + + V +++M + G P+ T
Sbjct: 95 HAGDIST---AVALFDGMPDPDVVSWNALVSGYCQRGMFQESVDLFVEMARRGVSPDRTT 151
Query: 90 FVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMS 149
F L SC+ + G H LA+K G++ ++ ++L++MYG ++D A F M
Sbjct: 152 FAVLLKSCSALEELSLGVQVHALAVKTGLEIDVRTGSALVDMYGKCRSLDDALCFFYGMP 211
Query: 150 PRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFRE 209
R+ +SW + ++G V++ E+ V L+LF E
Sbjct: 212 ERNWVSWGAAIAGCVQN--------------EQYVR-----------------GLELFIE 240
Query: 210 MMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQK 269
M + G + + AS +C + N GR +H + ++ + ++ TA++D+Y+K
Sbjct: 241 MQRLGLGVSQPSYASAFRSCAAMSCLNTGRQLHAHAIKNKFSSDRVVGTAIVDVYAKANS 300
Query: 270 VEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFI 329
+ A+R F + + + NAM++G G E + LF ++ SI D ++
Sbjct: 301 LTDARRAFFGLPNHTVETSNAMMVGLVRAGLGIEAMGLFQFMIR-----SSIRFDVVSLS 355
Query: 330 GVICACVRAELLTEGRKYFR-QMIDFYKIKPNFAHYWCMAN----LYAGAELTEEAEEIL 384
GV AC E + YF+ Q + IK F C+ N LY + EA I
Sbjct: 356 GVFSAC------AETKGYFQGQQVHCLAIKSGFDVDICVNNAVLDLYGKCKALMEAYLIF 409
Query: 385 RKMPEDNDNMSFESIM 400
+ M + D++S+ +I+
Sbjct: 410 QGMKQ-KDSVSWNAII 424
Score = 115 bits (288), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 76/322 (23%), Positives = 150/322 (46%), Gaps = 49/322 (15%)
Query: 32 ADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFV 91
A FG P++TV NA++ + + + + + MI++ + +
Sbjct: 307 AFFGLPNHTVET-----------SNAMMVGLVRAGLGIEAMGLFQFMIRSSIRFDVVSLS 355
Query: 92 SLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYG-CFGAMDCARNMFVQMSP 150
+F +CA+T +G H LA+K+G D ++ V N+++++YG C M+
Sbjct: 356 GVFSACAETKGYFQGQQVHCLAIKSGFDVDICVNNAVLDLYGKCKALME----------- 404
Query: 151 RDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREM 210
A+ +F M +++ VSWN +I+ ++G+ ++ F EM
Sbjct: 405 ---------------------AYLIFQGMKQKDSVSWNAIIAALEQNGHYDDTILHFNEM 443
Query: 211 MKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKV 270
++ G + +D T SVL AC G VH +++ L + + + ++D+Y KC +
Sbjct: 444 LRFGMKPDDFTYGSVLKACAALRSLEYGLMVHDKVIKSGLGSDAFVASTVVDMYCKCGII 503
Query: 271 EVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIG 330
+ AQ++ D + + +V WNA++ G ++ + EE K F+ +++ + PD TF
Sbjct: 504 DEAQKLHDRIGGQQVVSWNAILSGFSLNKESEEAQKFFSEMLD-----MGLKPDHFTFAT 558
Query: 331 VICACVRAELLTEGRKYFRQMI 352
V+ C + G++ Q+I
Sbjct: 559 VLDTCANLATIELGKQIHGQII 580
Score = 93.2 bits (230), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 61/275 (22%), Positives = 124/275 (45%), Gaps = 36/275 (13%)
Query: 70 QGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLI 129
+G+ +++M + G + ++ S F SCA C+ G H A+KN + V +++
Sbjct: 233 RGLELFIEMQRLGLGVSQPSYASAFRSCAAMSCLNTGRQLHAHAIKNKFSSDRVVGTAIV 292
Query: 130 NMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNI 189
++Y ++ ++ A F +P V + N
Sbjct: 293 DVYA-------------------------------KANSLTDARRAFFGLPNHTVETSNA 321
Query: 190 MISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTS 249
M+ G ++G ++ LF+ M++S R + +++ V +AC + + +G+ VH +++
Sbjct: 322 MMVGLVRAGLGIEAMGLFQFMIRSSIRFDVVSLSGVFSACAETKGYFQGQQVHCLAIKSG 381
Query: 250 LKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFT 309
+I ++ A++DLY KC+ + A +F M ++ V WNA+I +G ++ I F
Sbjct: 382 FDVDICVNNAVLDLYGKCKALMEAYLIFQGMKQKDSVSWNAIIAALEQNGHYDDTILHFN 441
Query: 310 ALVNGTVAGGSISPDEITFIGVICACVRAELLTEG 344
++ + PD+ T+ V+ AC L G
Sbjct: 442 EMLR-----FGMKPDDFTYGSVLKACAALRSLEYG 471
>gi|242059059|ref|XP_002458675.1| hypothetical protein SORBIDRAFT_03g037910 [Sorghum bicolor]
gi|241930650|gb|EES03795.1| hypothetical protein SORBIDRAFT_03g037910 [Sorghum bicolor]
Length = 894
Score = 229 bits (584), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 124/468 (26%), Positives = 243/468 (51%), Gaps = 11/468 (2%)
Query: 6 QIQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSNS 65
Q+ +H+I G F + F + +L+ A G +F + N++I YS
Sbjct: 431 QMHSHVIKLG-FLLDIFVSNSLIHLYAACGDLVCARSIFDEMLVKDVVSWNSLIGGYSQR 489
Query: 66 CVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVM 125
+ + + M + T V + +C G +N ++ ++ +
Sbjct: 490 NRFKEVLALFELMQAEEVQADKVTMVKVISACTHLGDWSMADCMVRYIERNHIEVDVYLG 549
Query: 126 NSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVV 185
N+LI+ Y G + A +F QM ++ ++ N+++ + + G++ +A ++FD +P ++++
Sbjct: 550 NTLIDYYCRIGQLQSAEKVFSQMKDKNTVTLNAMIHAYAKGGNLVSAKKIFDQIPNKDLI 609
Query: 186 SWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYT 245
SW+ MI YS++ + SL+LFR+M ++ + + +ASVL+AC + G+ +H Y
Sbjct: 610 SWSSMICAYSQASHFSDSLELFRQMQRAKVKPDAVVIASVLSACAHLGALDLGKWIHDYV 669
Query: 246 VRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGI 305
R ++K + I++ +LID+++KC ++ A +VF M +++ + WN++ILG +G +E +
Sbjct: 670 RRNNIKTDTIMENSLIDMFAKCGCMQEALQVFTEMEEKDTLSWNSIILGLANNGFEDEAL 729
Query: 306 KLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYW 365
+F +++ P+E+TF+GV+ AC L+ EG +F +M + ++P HY
Sbjct: 730 NIFYSMLT-----EGPRPNEVTFLGVLIACANKRLVQEGLDHFERMKTVHNLEPQMKHYG 784
Query: 366 CMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFV 425
C+ + + A E+A+ + +MP ++ + ++W LL C+ G VA+ E K
Sbjct: 785 CVVGILSRAGQLEKAKNFINEMP-----LAPDPVVWRILLGACKTHGNVAVAEVATKKLS 839
Query: 426 DMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVD 473
++DP + Y L N+YA A +W D VR+ M + + P C +VD
Sbjct: 840 ELDPSNSGDYMLLSNIYASADRWSDALNVRQWMADTAVRKSPACSVVD 887
Score = 186 bits (473), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 110/340 (32%), Positives = 179/340 (52%), Gaps = 16/340 (4%)
Query: 148 MSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLF 207
M ++++SWN +++G G++ A LFD MP RNVVSW +I GY+++ ++ LF
Sbjct: 1 MPMKNVVSWNVVITGFAGWGEIEYARLLFDQMPCRNVVSWTGLIDGYTRACLYAEAVALF 60
Query: 208 REMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKC 267
R MM G ++ T+ +V+ A G +HGY V+ + + + +LIDLY+K
Sbjct: 61 RHMMAGGISPSEITVLAVVPAISNLGGILMGEMLHGYCVKKGIMSDARVGNSLIDLYAKI 120
Query: 268 QKVEVAQRVFDSMAD-RNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEI 326
V+ + +VFD M D RNLV W ++I G +HG E ++LF + I P+ I
Sbjct: 121 GSVQNSLKVFDEMLDRRNLVSWTSIISGFAMHGLSVEALELFAEMRR-----AGIRPNRI 175
Query: 327 TFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRK 386
TF+ VI AC L+ +G +F+ M+ Y I P H+ C+ ++ A EAE+I+
Sbjct: 176 TFLSVINACSHGGLVEQGLAFFKSMVYEYNIDPEIKHFGCIIDMLGRAGRLCEAEQIIEG 235
Query: 387 MPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAG 446
+P + I+W LL C G V M +R K D++ + + L NV G
Sbjct: 236 LP-----VEVNVIVWRILLGCCSKYGEVEMGKRAIKMISDLERESGGDFAVLSNVLNELG 290
Query: 447 QWEDVARVRELMKKRRMGRMPGCRLVDLK-----EVVEKL 481
++ D + R+L+ +R++ ++PG LV + E V+KL
Sbjct: 291 RFSDAEQARKLLDERKIVKVPGLALVVTRSFVMMEAVKKL 330
Score = 144 bits (362), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 114/436 (26%), Positives = 198/436 (45%), Gaps = 56/436 (12%)
Query: 1 MKQLLQIQAHLITSGLFFNNSFWTINLLKHSADFGSPD--YTVLVFKCINNPGTFCVNAV 58
M+ + ++ AHL+ SGL +N + ++ + S D + VF+ I +P TF N +
Sbjct: 324 MEAVKKLHAHLVVSGL--HNCQYAMSKVIRSYALQQSDLVFAHKVFEQIESPTTFLWNTL 381
Query: 59 IKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGV 118
++ + S P +VFY + + G P++ TF + +CAKT + G H +K G
Sbjct: 382 LRGLAQSDAPKDAIVFYKKAQEKGMKPDNMTFPFVLKACAKTYAPKEGEQMHSHVIKLGF 441
Query: 119 DFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDI 178
++ V NSLI++Y G + CAR++F +M +D++SWNS+
Sbjct: 442 LLDIFVSNSLIHLYAACGDLVCARSIFDEMLVKDVVSWNSL------------------- 482
Query: 179 MPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEG 238
I GYS+ L LF M + + TM V++AC ++
Sbjct: 483 ------------IGGYSQRNRFKEVLALFELMQAEEVQADKVTMVKVISACTHLGDWSMA 530
Query: 239 RSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIH 298
+ Y R ++ ++ L LID Y + +++ A++VF M D+N V NAMI +
Sbjct: 531 DCMVRYIERNHIEVDVYLGNTLIDYYCRIGQLQSAEKVFSQMKDKNTVTLNAMIHAYAKG 590
Query: 299 GKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIK 358
G K+F + N D I++ +ICA +A ++ + FRQM K+K
Sbjct: 591 GNLVSAKKIFDQIPN---------KDLISWSSMICAYSQASHFSDSLELFRQM-QRAKVK 640
Query: 359 PN---FAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVA 415
P+ A +L + + +R+ +N+ ++IM SL+ + F
Sbjct: 641 PDAVVIASVLSACAHLGALDLGKWIHDYVRR-----NNIKTDTIMENSLIDM--FAKCGC 693
Query: 416 MVERLAKSFVDMDPQD 431
M E L + F +M+ +D
Sbjct: 694 MQEAL-QVFTEMEEKD 708
Score = 97.4 bits (241), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 67/283 (23%), Positives = 127/283 (44%), Gaps = 45/283 (15%)
Query: 93 LFGSCAKTGCVERGG----MCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNM---- 144
L G C+K G VE G M L ++G DF V+++++N G F + AR +
Sbjct: 248 LLGCCSKYGEVEMGKRAIKMISDLERESGGDF--AVLSNVLNELGRFSDAEQARKLLDER 305
Query: 145 ---------------FVQMSPRDLISWNSIVSG---------------HVRSGDMSAAHE 174
FV M + + +VSG ++ D+ AH+
Sbjct: 306 KIVKVPGLALVVTRSFVMMEAVKKLHAHLVVSGLHNCQYAMSKVIRSYALQQSDLVFAHK 365
Query: 175 LFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSAR 234
+F+ + WN ++ G ++S P ++ +++ + G + ++ T VL AC ++
Sbjct: 366 VFEQIESPTTFLWNTLLRGLAQSDAPKDAIVFYKKAQEKGMKPDNMTFPFVLKACAKTYA 425
Query: 235 FNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILG 294
EG +H + ++ +I + +LI LY+ C + A+ +FD M +++V WN++I G
Sbjct: 426 PKEGEQMHSHVIKLGFLLDIFVSNSLIHLYAACGDLVCARSIFDEMLVKDVVSWNSLIGG 485
Query: 295 HCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVR 337
+ + +E + LF + + D++T + VI AC
Sbjct: 486 YSQRNRFKEVLALFELM-----QAEEVQADKVTMVKVISACTH 523
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 74/325 (22%), Positives = 144/325 (44%), Gaps = 39/325 (12%)
Query: 32 ADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFV 91
A +G +Y L+F + +I Y+ +C+ + V + M+ G P+ T +
Sbjct: 17 AGWGEIEYARLLFDQMPCRNVVSWTGLIDGYTRACLYAEAVALFRHMMAGGISPSEITVL 76
Query: 92 SLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQM-SP 150
++ + + G + G M HG +K G+ + V NSLI++Y G++ + +F +M
Sbjct: 77 AVVPAISNLGGILMGEMLHGYCVKKGIMSDARVGNSLIDLYAKIGSVQNSLKVFDEMLDR 136
Query: 151 RDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREM 210
R+L+SW SI+ SG++ G +L+LF EM
Sbjct: 137 RNLVSWTSII-------------------------------SGFAMHGLSVEALELFAEM 165
Query: 211 MKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTV-RTSLKPNIILDTALIDLYSKCQK 269
++G R N T SV+ AC +G + V ++ P I +ID+ + +
Sbjct: 166 RRAGIRPNRITFLSVINACSHGGLVEQGLAFFKSMVYEYNIDPEIKHFGCIIDMLGRAGR 225
Query: 270 VEVAQRVFDSM-ADRNLVCWNAMILGHCI-HGKPEEG---IKLFTALVNGTVAGGSISPD 324
+ A+++ + + + N++ W ++LG C +G+ E G IK+ + L + ++ +
Sbjct: 226 LCEAEQIIEGLPVEVNVIVWR-ILLGCCSKYGEVEMGKRAIKMISDLERESGGDFAVLSN 284
Query: 325 EITFIGVICACVRAELLTEGRKYFR 349
+ +G +A L + RK +
Sbjct: 285 VLNELGRFSDAEQARKLLDERKIVK 309
>gi|449435190|ref|XP_004135378.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g77170-like [Cucumis sativus]
Length = 609
Score = 229 bits (584), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 122/426 (28%), Positives = 223/426 (52%), Gaps = 43/426 (10%)
Query: 48 NNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGG 107
N+P +F N +I++Y+ VP + Y+ M++ G +P+ YT +F + + + G
Sbjct: 220 NHPSSFYWNIIIRSYTRLEVPRIALFVYIDMLRAGILPDCYTLPIVFKALSLAYAFDLGL 279
Query: 108 MCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSG 167
H +A++ G +F+ + LI++Y + G
Sbjct: 280 QLHSVAIRLGFEFDQYSESGLISLYS-------------------------------KIG 308
Query: 168 DMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLT 227
D+ A ++F+ R + SWN +I+G S+ G ++ +F ++ +SG +D T+ SV +
Sbjct: 309 DLECACKVFEQNHNRKLGSWNAIIAGLSQGGRAKEAVNMFIKLRQSGLEPDDFTIVSVTS 368
Query: 228 ACGRSARFNEGRSVHGYT--VRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNL 285
ACG +H + V+ + K NI++ +LID+Y KC ++++A +VF +M RN+
Sbjct: 369 ACGSLGNLELSLQMHKFVFQVKVTGKSNILMLNSLIDMYGKCGRMDLAMKVFSNMGHRNV 428
Query: 286 VCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGR 345
W ++I+G+ +HG+ ++ ++ F + V P+++TF+GV+ ACV ++ EG+
Sbjct: 429 SSWTSLIVGYAMHGQVKQALENFQFMREAGVP-----PNQVTFVGVLSACVHGGMINEGK 483
Query: 346 KYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLL 405
YF M + Y KP HY CM +L + A L EEA ++ +MP M SI+W L+
Sbjct: 484 HYFDMMKNVYGFKPQLPHYGCMVDLLSKAGLLEEARRMIEEMP-----MKANSIIWGCLI 538
Query: 406 SLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGR 465
C G V + E K +++P + Y L N+YA G W++ ++R++MK+R++ +
Sbjct: 539 GGCEKHGNVEIGEWAGKHLQELEPWNDGVYVVLSNIYATNGMWKEAQKMRDVMKQRQLAK 598
Query: 466 MPGCRL 471
+PG L
Sbjct: 599 VPGYSL 604
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 79/310 (25%), Positives = 130/310 (41%), Gaps = 48/310 (15%)
Query: 5 LQIQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSN 64
LQ+ + I G F+ + L+ + G + VF+ +N NA+I S
Sbjct: 279 LQLHSVAIRLGFEFD-QYSESGLISLYSKIGDLECACKVFEQNHNRKLGSWNAIIAGLSQ 337
Query: 65 SCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFE--L 122
+ V ++++ ++G P+ +T VS+ +C G +E H + V + +
Sbjct: 338 GGRAKEAVNMFIKLRQSGLEPDDFTIVSVTSACGSLGNLELSLQMHKFVFQVKVTGKSNI 397
Query: 123 PVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPER 182
++NSLI+MYG G MD A +F M R++ SW S++ G+ G + A E F M E
Sbjct: 398 LMLNSLIDMYGKCGRMDLAMKVFSNMGHRNVSSWTSLIVGYAMHGQVKQALENFQFMRE- 456
Query: 183 NVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEG---- 238
+G N T VL+AC NEG
Sbjct: 457 ------------------------------AGVPPNQVTFVGVLSACVHGGMINEGKHYF 486
Query: 239 ---RSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADR-NLVCWNAMILG 294
++V+G+ KP + ++DL SK +E A+R+ + M + N + W +I G
Sbjct: 487 DMMKNVYGF------KPQLPHYGCMVDLLSKAGLLEEARRMIEEMPMKANSIIWGCLIGG 540
Query: 295 HCIHGKPEEG 304
HG E G
Sbjct: 541 CEKHGNVEIG 550
>gi|14165320|gb|AAK55452.1|AC069300_7 putative PPR repeat protein [Oryza sativa Japonica Group]
gi|31433484|gb|AAP54989.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
Length = 905
Score = 229 bits (584), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 127/461 (27%), Positives = 232/461 (50%), Gaps = 44/461 (9%)
Query: 42 LVFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTG 101
L+F+ + + NA+I A + D ++ + +M++ G P+ +T+ S+ +CA
Sbjct: 449 LIFQGMKQKDSVSWNAIIAALEQNGHYDDTILHFNEMLRFGMKPDDFTYGSVLKACAALR 508
Query: 102 CVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVS 161
+E G M H +K+G+ + V +++++MY
Sbjct: 509 SLEYGLMVHDKVIKSGLGSDAFVASTVVDMY----------------------------- 539
Query: 162 GHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKT 221
+ G + A +L D + + VVSWN ++SG+S + + K F EM+ G + + T
Sbjct: 540 --CKCGIIDEAQKLHDRIGGQQVVSWNAILSGFSLNKESEEAQKFFSEMLDMGLKPDHFT 597
Query: 222 MASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMA 281
A+VL C A G+ +HG ++ + + + + L+D+Y+KC + + VF+ +
Sbjct: 598 FATVLDTCANLATIELGKQIHGQIIKQEMLDDEYISSTLVDMYAKCGDMPDSLLVFEKVE 657
Query: 282 DRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELL 341
R+ V WNAMI G+ +HG E +++F + V P+ TF+ V+ AC L
Sbjct: 658 KRDFVSWNAMICGYALHGLGVEALRMFERMQKENVV-----PNHATFVAVLRACSHVGLF 712
Query: 342 TEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMW 401
+G +YF M YK++P H+ CM ++ ++ +EA + + MP D +++W
Sbjct: 713 DDGCRYFHLMTTHYKLEPQLEHFACMVDILGRSKGPQEAVKFINSMPFQAD-----AVIW 767
Query: 402 VSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKR 461
+LLS+C+ + V + E A + + +DP D S Y L NVYA +G+W DV+R R L+K+
Sbjct: 768 KTLLSICKIRQDVEIAELAASNVLLLDPDDSSVYILLSNVYAESGKWADVSRTRRLLKQG 827
Query: 462 RMGRMPGCRLVDLKEVVEKLKVG---HFWRGGMKEEVNKMM 499
R+ + PGC ++++ + VG H G + E +N ++
Sbjct: 828 RLKKEPGCSWIEVQSEMHGFLVGDKAHPRSGELYEMLNDLI 868
Score = 126 bits (316), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 96/324 (29%), Positives = 151/324 (46%), Gaps = 12/324 (3%)
Query: 85 PNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELP---VMNSLINMYGCFGAMDCA 141
P TF +F SCA+ G E + V +P V N L+ MY CA
Sbjct: 55 PARVTFSRVFQSCAQAG-REALAAGRAAHARMVVSGFVPTAFVSNCLLQMYARCAGAACA 113
Query: 142 RNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPG 201
R +F M RD +SWN++++ + +GD+S A LFD MP+ +VVSWN ++SGY + G
Sbjct: 114 RRVFDAMPRRDTVSWNTMLTAYSHAGDISTAVALFDGMPDPDVVSWNALVSGYCQRGMFQ 173
Query: 202 CSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALI 261
S+ LF EM + G + T A +L +C + G VH V+T L+ ++ +AL+
Sbjct: 174 ESVDLFVEMARRGVSPDRTTFAVLLKSCSALEELSLGVQVHALAVKTGLEIDVRTGSALV 233
Query: 262 DLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSI 321
D+Y KC+ ++ A F M +RN V W A I G + + G++LF + + G
Sbjct: 234 DMYGKCRSLDDALCFFYGMPERNWVSWGAAIAGCVQNEQYVRGLELFIEMQR--LGLGVS 291
Query: 322 SPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAE 381
P ++ +C L GR+ I K + + ++YA A +A
Sbjct: 292 QP---SYASAFRSCAAMSCLNTGRQLHAHAIK-NKFSSDRVVGTAIVDVYAKANSLTDAR 347
Query: 382 EILRKMPEDNDNMSFESIMWVSLL 405
+P N + + M V L+
Sbjct: 348 RAFFGLP--NHTVETSNAMMVGLV 369
Score = 117 bits (294), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 92/376 (24%), Positives = 168/376 (44%), Gaps = 51/376 (13%)
Query: 30 HSADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYT 89
H+ D + V +F + +P NA++ Y + + V +++M + G P+ T
Sbjct: 137 HAGDIST---AVALFDGMPDPDVVSWNALVSGYCQRGMFQESVDLFVEMARRGVSPDRTT 193
Query: 90 FVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMS 149
F L SC+ + G H LA+K G++ ++ ++L++MYG ++D A F M
Sbjct: 194 FAVLLKSCSALEELSLGVQVHALAVKTGLEIDVRTGSALVDMYGKCRSLDDALCFFYGMP 253
Query: 150 PRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFRE 209
R+ +SW + ++G V++ E+ V L+LF E
Sbjct: 254 ERNWVSWGAAIAGCVQN--------------EQYVR-----------------GLELFIE 282
Query: 210 MMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQK 269
M + G + + AS +C + N GR +H + ++ + ++ TA++D+Y+K
Sbjct: 283 MQRLGLGVSQPSYASAFRSCAAMSCLNTGRQLHAHAIKNKFSSDRVVGTAIVDVYAKANS 342
Query: 270 VEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFI 329
+ A+R F + + + NAM++G G E + LF ++ SI D ++
Sbjct: 343 LTDARRAFFGLPNHTVETSNAMMVGLVRAGLGIEAMGLFQFMIR-----SSIRFDVVSLS 397
Query: 330 GVICACVRAELLTEGRKYFR-QMIDFYKIKPNFAHYWCMAN----LYAGAELTEEAEEIL 384
GV AC E + YF+ Q + IK F C+ N LY + EA I
Sbjct: 398 GVFSAC------AETKGYFQGQQVHCLAIKSGFDVDICVNNAVLDLYGKCKALMEAYLIF 451
Query: 385 RKMPEDNDNMSFESIM 400
+ M + D++S+ +I+
Sbjct: 452 QGMKQ-KDSVSWNAII 466
Score = 115 bits (288), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 76/322 (23%), Positives = 150/322 (46%), Gaps = 49/322 (15%)
Query: 32 ADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFV 91
A FG P++TV NA++ + + + + + MI++ + +
Sbjct: 349 AFFGLPNHTVET-----------SNAMMVGLVRAGLGIEAMGLFQFMIRSSIRFDVVSLS 397
Query: 92 SLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYG-CFGAMDCARNMFVQMSP 150
+F +CA+T +G H LA+K+G D ++ V N+++++YG C M+
Sbjct: 398 GVFSACAETKGYFQGQQVHCLAIKSGFDVDICVNNAVLDLYGKCKALME----------- 446
Query: 151 RDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREM 210
A+ +F M +++ VSWN +I+ ++G+ ++ F EM
Sbjct: 447 ---------------------AYLIFQGMKQKDSVSWNAIIAALEQNGHYDDTILHFNEM 485
Query: 211 MKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKV 270
++ G + +D T SVL AC G VH +++ L + + + ++D+Y KC +
Sbjct: 486 LRFGMKPDDFTYGSVLKACAALRSLEYGLMVHDKVIKSGLGSDAFVASTVVDMYCKCGII 545
Query: 271 EVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIG 330
+ AQ++ D + + +V WNA++ G ++ + EE K F+ +++ + PD TF
Sbjct: 546 DEAQKLHDRIGGQQVVSWNAILSGFSLNKESEEAQKFFSEMLD-----MGLKPDHFTFAT 600
Query: 331 VICACVRAELLTEGRKYFRQMI 352
V+ C + G++ Q+I
Sbjct: 601 VLDTCANLATIELGKQIHGQII 622
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 61/275 (22%), Positives = 124/275 (45%), Gaps = 36/275 (13%)
Query: 70 QGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLI 129
+G+ +++M + G + ++ S F SCA C+ G H A+KN + V +++
Sbjct: 275 RGLELFIEMQRLGLGVSQPSYASAFRSCAAMSCLNTGRQLHAHAIKNKFSSDRVVGTAIV 334
Query: 130 NMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNI 189
++Y ++ ++ A F +P V + N
Sbjct: 335 DVYA-------------------------------KANSLTDARRAFFGLPNHTVETSNA 363
Query: 190 MISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTS 249
M+ G ++G ++ LF+ M++S R + +++ V +AC + + +G+ VH +++
Sbjct: 364 MMVGLVRAGLGIEAMGLFQFMIRSSIRFDVVSLSGVFSACAETKGYFQGQQVHCLAIKSG 423
Query: 250 LKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFT 309
+I ++ A++DLY KC+ + A +F M ++ V WNA+I +G ++ I F
Sbjct: 424 FDVDICVNNAVLDLYGKCKALMEAYLIFQGMKQKDSVSWNAIIAALEQNGHYDDTILHFN 483
Query: 310 ALVNGTVAGGSISPDEITFIGVICACVRAELLTEG 344
++ + PD+ T+ V+ AC L G
Sbjct: 484 EMLR-----FGMKPDDFTYGSVLKACAALRSLEYG 513
>gi|297740904|emb|CBI31086.3| unnamed protein product [Vitis vinifera]
Length = 766
Score = 229 bits (584), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 125/423 (29%), Positives = 218/423 (51%), Gaps = 41/423 (9%)
Query: 57 AVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKN 116
A+I Y + + + + + +++ NS T S+ +CA + G HG LKN
Sbjct: 321 AMISGYVLNGMNNNALEIFRWLLQERMRANSVTLASVLPACAGLAALTLGKELHGHILKN 380
Query: 117 GVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELF 176
G V +++++MY + G + AH+ F
Sbjct: 381 GHGGSCYVGSAIMDMYA-------------------------------KCGRLDLAHQTF 409
Query: 177 DIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFN 236
+ +++ V WN MI+ S++G P ++ LFR+M +G + + ++++ L+AC +
Sbjct: 410 IGISDKDAVCWNSMITSCSQNGKPEEAIDLFRQMGMAGTKYDCVSISAALSACANLPALH 469
Query: 237 EGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHC 296
G+ +H + +R + + ++ ++ALID+YSKC +++A RVFD+M ++N V WN++I +
Sbjct: 470 YGKEIHAFMMRGAFRSDLFAESALIDMYSKCGNLDLACRVFDTMEEKNEVSWNSIIAAYG 529
Query: 297 IHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYK 356
HG+ ++ + LF ++ G I PD +TF+ +I AC A + EG YFR M +
Sbjct: 530 NHGRLKDSLNLFHGML-----GDGIQPDHVTFLAIISACGHAGQVDEGIHYFRCMTEELG 584
Query: 357 IKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAM 416
I HY CM +L+ A EA ++ MP S ++ +W +LL CR G V +
Sbjct: 585 IMARMEHYACMVDLFGRAGRLNEAFGMINSMP-----FSPDAGVWGTLLGACRLHGNVEL 639
Query: 417 VERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLKE 476
E +++ D+DPQ+ Y L NV+A AGQWE V ++R LMK+R + ++PGC +D+
Sbjct: 640 AEVASRNLFDLDPQNSGYYVLLSNVHANAGQWESVLKIRSLMKERGVQKVPGCSWIDVNN 699
Query: 477 VVE 479
Sbjct: 700 TTH 702
Score = 124 bits (311), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 91/347 (26%), Positives = 162/347 (46%), Gaps = 40/347 (11%)
Query: 56 NAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALK 115
N ++ Y + D +++M + PNS TF + CA + G HGL +
Sbjct: 217 NVMLNGYVKNGDWDNATGVFMEMRRTETNPNSVTFACVLSVCASEIMINFGSQLHGLVVS 276
Query: 116 NGVDFELPVMNS--LINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAH 173
+G++ + PV N+ LI++Y ++ AR +F Q +P D
Sbjct: 277 SGLEMDSPVANTFALIDIYFKCRDVEMARKIFDQRTPVD--------------------- 315
Query: 174 ELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSA 233
+V MISGY +G +L++FR +++ R N T+ASVL AC A
Sbjct: 316 ----------IVVCTAMISGYVLNGMNNNALEIFRWLLQERMRANSVTLASVLPACAGLA 365
Query: 234 RFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMIL 293
G+ +HG+ ++ + + +A++D+Y+KC ++++A + F ++D++ VCWN+MI
Sbjct: 366 ALTLGKELHGHILKNGHGGSCYVGSAIMDMYAKCGRLDLAHQTFIGISDKDAVCWNSMIT 425
Query: 294 GHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMID 353
+GKPEE I LF + +AG D ++ + AC L G++ M+
Sbjct: 426 SCSQNGKPEEAIDLFRQM---GMAGTKY--DCVSISAALSACANLPALHYGKEIHAFMMR 480
Query: 354 FYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIM 400
FA + ++Y+ + A + M E N+ +S+ SI+
Sbjct: 481 GAFRSDLFAES-ALIDMYSKCGNLDLACRVFDTMEEKNE-VSWNSII 525
Score = 113 bits (282), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 79/293 (26%), Positives = 135/293 (46%), Gaps = 38/293 (12%)
Query: 56 NAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALK 115
N +I+ ++ D ++FY +M+ G +P+ YTF + +C V G + H
Sbjct: 116 NWMIRGFTMMGQFDFALLFYFKMLGCGTLPDKYTFPYVIKACGGLNSVALGRVVHDKIQF 175
Query: 116 NGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHEL 175
G + ++ V +SLI Y +G + A L
Sbjct: 176 MGFELDVFVGSSLIKFYS-------------------------------ENGCIHDARYL 204
Query: 176 FDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARF 235
FD MP ++ V WN+M++GY K+G+ + +F EM ++ N T A VL+ C
Sbjct: 205 FDRMPSKDGVLWNVMLNGYVKNGDWDNATGVFMEMRRTETNPNSVTFACVLSVCASEIMI 264
Query: 236 NEGRSVHGYTVRTSLKPN--IILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMIL 293
N G +HG V + L+ + + ALID+Y KC+ VE+A+++FD ++V AMI
Sbjct: 265 NFGSQLHGLVVSSGLEMDSPVANTFALIDIYFKCRDVEMARKIFDQRTPVDIVVCTAMIS 324
Query: 294 GHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRK 346
G+ ++G +++F L+ + S +T V+ AC LT G++
Sbjct: 325 GYVLNGMNNNALEIFRWLLQERMRANS-----VTLASVLPACAGLAALTLGKE 372
Score = 71.6 bits (174), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 66/303 (21%), Positives = 121/303 (39%), Gaps = 38/303 (12%)
Query: 90 FVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMS 149
VS+ +C + +G H L NG+ + + L+ MY GA A+N+F Q
Sbjct: 49 LVSILQTCTDPSGLSQGRQAHAQMLVNGIGYNGILGTKLLGMYVLCGAFLDAKNIFYQ-- 106
Query: 150 PRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFRE 209
L W S WN MI G++ G +L + +
Sbjct: 107 ---LRLWCS--------------------------EPWNWMIRGFTMMGQFDFALLFYFK 137
Query: 210 MMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQK 269
M+ G + T V+ ACG GR VH + ++ + ++LI YS+
Sbjct: 138 MLGCGTLPDKYTFPYVIKACGGLNSVALGRVVHDKIQFMGFELDVFVGSSLIKFYSENGC 197
Query: 270 VEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFI 329
+ A+ +FD M ++ V WN M+ G+ +G + +F + +P+ +TF
Sbjct: 198 IHDARYLFDRMPSKDGVLWNVMLNGYVKNGDWDNATGVFMEMRRTET-----NPNSVTFA 252
Query: 330 GVICACVRAELLTEGRKYFRQMIDF-YKIKPNFAHYWCMANLYAGAELTEEAEEIL-RKM 387
V+ C ++ G + ++ ++ A+ + + ++Y E A +I ++
Sbjct: 253 CVLSVCASEIMINFGSQLHGLVVSSGLEMDSPVANTFALIDIYFKCRDVEMARKIFDQRT 312
Query: 388 PED 390
P D
Sbjct: 313 PVD 315
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 61/276 (22%), Positives = 113/276 (40%), Gaps = 39/276 (14%)
Query: 32 ADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFV 91
A G D F I++ C N++I + S + P++ + + QM G + +
Sbjct: 397 AKCGRLDLAHQTFIGISDKDAVCWNSMITSCSQNGKPEEAIDLFRQMGMAGTKYDCVSIS 456
Query: 92 SLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPR 151
+ +CA + G H ++ +L ++LI+MY G +D A +F M +
Sbjct: 457 AALSACANLPALHYGKEIHAFMMRGAFRSDLFAESALIDMYSKCGNLDLACRVFDTMEEK 516
Query: 152 DLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMM 211
+ +SWNSI I+ Y G SL LF M+
Sbjct: 517 NEVSWNSI-------------------------------IAAYGNHGRLKDSLNLFHGML 545
Query: 212 KSGFRGNDKTMASVLTACGRSARFNEGRSVHGY---TVRTSLKPNIILDTALIDLYSKCQ 268
G + + T ++++ACG + + +EG +H + T + + ++DL+ +
Sbjct: 546 GDGIQPDHVTFLAIISACGHAGQVDEG--IHYFRCMTEELGIMARMEHYACMVDLFGRAG 603
Query: 269 KVEVAQRVFDSMA-DRNLVCWNAMILGHC-IHGKPE 302
++ A + +SM + W + LG C +HG E
Sbjct: 604 RLNEAFGMINSMPFSPDAGVWGTL-LGACRLHGNVE 638
Score = 45.8 bits (107), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 46/193 (23%), Positives = 77/193 (39%), Gaps = 16/193 (8%)
Query: 218 NDKTMA----SVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVA 273
ND ++A S+L C + ++GR H + + N IL T L+ +Y C A
Sbjct: 41 NDDSLAPQLVSILQTCTDPSGLSQGRQAHAQMLVNGIGYNGILGTKLLGMYVLCGAFLDA 100
Query: 274 QRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVIC 333
+ +F + WN MI G + G+ + F L + G PD+ TF VI
Sbjct: 101 KNIFYQLRLWCSEPWNWMIRGFTMMGQFD-----FALLFYFKMLGCGTLPDKYTFPYVIK 155
Query: 334 ACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDN 393
AC + GR I F + + + Y+ +A + +MP
Sbjct: 156 ACGGLNSVALGR-VVHDKIQFMGFELDVFVGSSLIKFYSENGCIHDARYLFDRMP----- 209
Query: 394 MSFESIMWVSLLS 406
S + ++W +L+
Sbjct: 210 -SKDGVLWNVMLN 221
>gi|224103989|ref|XP_002313273.1| predicted protein [Populus trichocarpa]
gi|222849681|gb|EEE87228.1| predicted protein [Populus trichocarpa]
Length = 680
Score = 229 bits (584), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 139/442 (31%), Positives = 217/442 (49%), Gaps = 43/442 (9%)
Query: 43 VFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGC 102
VF I NA++ ++ + + V QM +G +PNS TF ++ +CA+ G
Sbjct: 267 VFNQIGEKNIVSWNAMVANFAQNRLELAAVDLVRQMQADGEIPNSVTFTNVLPACARIGF 326
Query: 103 VERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSG 162
+ G H A++ G +L V N+L +MY G ++ AR +F ++S RD
Sbjct: 327 LRPGKEIHARAIRTGSSVDLFVSNALTDMYAKCGCLNLARRVF-KISLRD---------- 375
Query: 163 HVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTM 222
VS+NI+I GYS++ N SL+LF EM G + + +
Sbjct: 376 ---------------------EVSYNILIIGYSQTTNCSESLRLFLEMGIKGMKLDVVSY 414
Query: 223 ASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMAD 282
V++AC A +G+ VHG VR L ++ + AL+D Y KC ++++A +VF +
Sbjct: 415 MGVISACANLAALKQGKEVHGLAVRKHLHTHLFIANALLDFYIKCGRIDLAGKVFRQIPS 474
Query: 283 RNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLT 342
R+ WN+MILG+ + G+ I LF A+ V D +++I V+ AC L+
Sbjct: 475 RDTASWNSMILGYGMLGELTIAINLFEAMKEDGV-----EYDSVSYIAVLSACSHGGLVE 529
Query: 343 EGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWV 402
EG+KYF M IKP HY CM +L A L EEA +++ +P + D + +W
Sbjct: 530 EGKKYFEHM-QVQNIKPTQMHYACMVDLLGRAGLIEEAVKLIESLPIEPD-----ANVWG 583
Query: 403 SLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRR 462
+LL CR G + + A+ + PQ Y L N+YA AG+W++ +VR+LMK R
Sbjct: 584 ALLGACRIHGYIELAHWAAEHLFKLKPQHSGYYSVLSNMYAEAGKWDEANQVRKLMKSRG 643
Query: 463 MGRMPGCRLVDLKEVVEKLKVG 484
+ PGC V + V G
Sbjct: 644 AKKNPGCSWVQIDNQVHAFVAG 665
Score = 124 bits (310), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 82/311 (26%), Positives = 150/311 (48%), Gaps = 38/311 (12%)
Query: 82 GFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCA 141
G + +TF + +CA + V++G HG+ K G D ++ V N+L+ YG G +
Sbjct: 2 GVRLDDHTFPFVLKACADSLSVQKGREIHGVVFKLGFDSDVFVGNTLLLFYGNCGGLKDV 61
Query: 142 RNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPG 201
+ +F +M RD++SWNS+ I +S G
Sbjct: 62 KRVFDEMLERDVVSWNSV-------------------------------IGVFSVHGFYA 90
Query: 202 CSLKLFREM-MKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTAL 260
++ LF EM ++SGFR N ++ SVL C GR +H Y V+T L + + AL
Sbjct: 91 EAIHLFCEMNLRSGFRPNMVSIVSVLPVCAGLEDGVTGRQIHCYVVKTGLDSQVTVGNAL 150
Query: 261 IDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGS 320
+D+Y KC V+ ++RVFD +++RN V WNA+I + ++ +++F +++G V
Sbjct: 151 VDVYGKCGYVKDSRRVFDEISERNGVSWNAIITSLAYLERNQDALEMFRLMIDGGV---- 206
Query: 321 ISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEA 380
P+ +TF ++ V +L G++ + F ++ + + ++YA + + +A
Sbjct: 207 -KPNSVTFSSMLPVLVELKLFDFGKEIHGFSLRF-GLESDIFVANALIDMYAKSGRSLQA 264
Query: 381 EEILRKMPEDN 391
+ ++ E N
Sbjct: 265 SNVFNQIGEKN 275
Score = 123 bits (309), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 111/450 (24%), Positives = 194/450 (43%), Gaps = 80/450 (17%)
Query: 43 VFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGC 102
VF I+ NA+I + + + + MI G PNS TF S+ +
Sbjct: 166 VFDEISERNGVSWNAIITSLAYLERNQDALEMFRLMIDGGVKPNSVTFSSMLPVLVELKL 225
Query: 103 VERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSG 162
+ G HG +L+ G++ ++ V N+LI+MY
Sbjct: 226 FDFGKEIHGFSLRFGLESDIFVANALIDMYA----------------------------- 256
Query: 163 HVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTM 222
+SG A +F+ + E+N+VSWN M++ ++++ ++ L R+M G N T
Sbjct: 257 --KSGRSLQASNVFNQIGEKNIVSWNAMVANFAQNRLELAAVDLVRQMQADGEIPNSVTF 314
Query: 223 ASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMAD 282
+VL AC R G+ +H +RT ++ + AL D+Y+KC + +A+RVF ++
Sbjct: 315 TNVLPACARIGFLRPGKEIHARAIRTGSSVDLFVSNALTDMYAKCGCLNLARRVF-KISL 373
Query: 283 RNLVCWNAMILGHCIHGKPEEGIKLFTAL-VNGTVAGGSISPDEITFIGVICACVRAELL 341
R+ V +N +I+G+ E ++LF + + G + D ++++GVI AC L
Sbjct: 374 RDEVSYNILIIGYSQTTNCSESLRLFLEMGIKG------MKLDVVSYMGVISACANLAAL 427
Query: 342 TEG--------RKYFRQ-------MIDFY--------------KIKPNFAHYWCMANLYA 372
+G RK+ ++DFY +I W L
Sbjct: 428 KQGKEVHGLAVRKHLHTHLFIANALLDFYIKCGRIDLAGKVFRQIPSRDTASWNSMILGY 487
Query: 373 G--AELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQ 430
G ELT A + M E D + ++S+ ++++LS C G +VE K F M Q
Sbjct: 488 GMLGELT-IAINLFEAMKE--DGVEYDSVSYIAVLSACSHGG---LVEEGKKYFEHMQVQ 541
Query: 431 DFS----RYQFLLNVYAVAGQWEDVARVRE 456
+ Y ++++ AG E+ ++ E
Sbjct: 542 NIKPTQMHYACMVDLLGRAGLIEEAVKLIE 571
Score = 117 bits (292), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 80/298 (26%), Positives = 140/298 (46%), Gaps = 37/298 (12%)
Query: 56 NAVIKAYSNSCVPDQGVVFYLQM-IKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLAL 114
N+VI +S + + + +M +++GF PN + VS+ CA G H +
Sbjct: 77 NSVIGVFSVHGFYAEAIHLFCEMNLRSGFRPNMVSIVSVLPVCAGLEDGVTGRQIHCYVV 136
Query: 115 KNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHE 174
K G+D ++ V N+L+++YG + G + +
Sbjct: 137 KTGLDSQVTVGNALVDVYG-------------------------------KCGYVKDSRR 165
Query: 175 LFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSAR 234
+FD + ERN VSWN +I+ + +L++FR M+ G + N T +S+L
Sbjct: 166 VFDEISERNGVSWNAIITSLAYLERNQDALEMFRLMIDGGVKPNSVTFSSMLPVLVELKL 225
Query: 235 FNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILG 294
F+ G+ +HG+++R L+ +I + ALID+Y+K + A VF+ + ++N+V WNAM+
Sbjct: 226 FDFGKEIHGFSLRFGLESDIFVANALIDMYAKSGRSLQASNVFNQIGEKNIVSWNAMVAN 285
Query: 295 HCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMI 352
+ + LV A G I P+ +TF V+ AC R L G++ + I
Sbjct: 286 FAQNRLELAAVD----LVRQMQADGEI-PNSVTFTNVLPACARIGFLRPGKEIHARAI 338
Score = 75.1 bits (183), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 58/224 (25%), Positives = 99/224 (44%), Gaps = 15/224 (6%)
Query: 214 GFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVA 273
G R +D T VL AC S +GR +HG + ++ + L+ Y C ++
Sbjct: 2 GVRLDDHTFPFVLKACADSLSVQKGREIHGVVFKLGFDSDVFVGNTLLLFYGNCGGLKDV 61
Query: 274 QRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVIC 333
+RVFD M +R++V WN++I +HG E I LF + + G P+ ++ + V+
Sbjct: 62 KRVFDEMLERDVVSWNSVIGVFSVHGFYAEAIHLFCEM---NLRSG-FRPNMVSIVSVLP 117
Query: 334 ACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMAN----LYAGAELTEEAEEILRKMPE 389
C E GR+ I Y +K + N +Y +++ + ++ E
Sbjct: 118 VCAGLEDGVTGRQ-----IHCYVVKTGLDSQVTVGNALVDVYGKCGYVKDSRRVFDEISE 172
Query: 390 DNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFS 433
N +S+ +I+ SL L R Q A+ M + V + FS
Sbjct: 173 RN-GVSWNAII-TSLAYLERNQDALEMFRLMIDGGVKPNSVTFS 214
>gi|110738388|dbj|BAF01120.1| hypothetical protein [Arabidopsis thaliana]
Length = 596
Score = 229 bits (583), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 139/472 (29%), Positives = 231/472 (48%), Gaps = 43/472 (9%)
Query: 5 LQIQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSN 64
Q AH++ GL ++ F +L+ + G D+ +F + A+I +
Sbjct: 123 FQFHAHIVKFGLD-SDPFVRNSLISGYSSSGLFDFASRLFDGAEDKDVVTWTAMIDGFVR 181
Query: 65 SCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNG-VDFELP 123
+ + +V++++M K G N T VS+ + K V G HGL L+ G V ++
Sbjct: 182 NGSASEAMVYFVEMKKTGVAANEMTVVSVLKAAGKVEDVRFGRSVHGLYLETGRVKCDVF 241
Query: 124 VMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERN 183
+ +SL++MYG D A ++FD MP RN
Sbjct: 242 IGSSLVDMYGKCSCYD-------------------------------DAQKVFDEMPSRN 270
Query: 184 VVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHG 243
VV+W +I+GY +S + +F EM+KS N+KT++SVL+AC + GR VH
Sbjct: 271 VVTWTALIAGYVQSRCFDKGMLVFEEMLKSDVAPNEKTLSSVLSACAHVGALHRGRRVHC 330
Query: 244 YTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEE 303
Y ++ S++ N T LIDLY KC +E A VF+ + ++N+ W AMI G HG +
Sbjct: 331 YMIKNSIEINTTAGTTLIDLYVKCGCLEEAILVFERLHEKNVYTWTAMINGFAAHGYARD 390
Query: 304 GIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAH 363
LF +++ V SP+E+TF+ V+ AC L+ EGR+ F M + ++ H
Sbjct: 391 AFDLFYTMLSSHV-----SPNEVTFMAVLSACAHGGLVEEGRRLFLSMKGRFNMELKADH 445
Query: 364 YWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKS 423
Y CM +L+ L EEA+ ++ +MP + N ++W +L C + + A
Sbjct: 446 YACMVDLFGRKGLLEEAKALIERMPMEPTN-----VVWGALFGSCLLHKDYELGKYAASR 500
Query: 424 FVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLK 475
+ + P RY L N+Y+ + W++VARVR+ MK +++ + PG +++K
Sbjct: 501 VIKLQPSHSGRYTLLANLYSESQNWDEVARVRKQMKDQQVVKSPGFSWIEVK 552
Score = 128 bits (322), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 96/339 (28%), Positives = 155/339 (45%), Gaps = 41/339 (12%)
Query: 56 NAVIKAYSNSCVPDQGVVF--YLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLA 113
+++I +S ++ + F Y M +NG +P+ +TF L + K H
Sbjct: 71 DSLIGHFSGGITLNRRLSFLAYRHMRRNGVIPSRHTFPPLLKAVFKLR-DSNPFQFHAHI 129
Query: 114 LKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAH 173
+K G+D + V NSLI+ Y G D A +F +D+++W +++ G VR+G S A
Sbjct: 130 VKFGLDSDPFVRNSLISGYSSSGLFDFASRLFDGAEDKDVVTWTAMIDGFVRNGSASEA- 188
Query: 174 ELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSA 233
+ F EM K+G N+ T+ SVL A G+
Sbjct: 189 ------------------------------MVYFVEMKKTGVAANEMTVVSVLKAAGKVE 218
Query: 234 RFNEGRSVHGYTVRTS-LKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMI 292
GRSVHG + T +K ++ + ++L+D+Y KC + AQ+VFD M RN+V W A+I
Sbjct: 219 DVRFGRSVHGLYLETGRVKCDVFIGSSLVDMYGKCSCYDDAQKVFDEMPSRNVVTWTALI 278
Query: 293 LGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMI 352
G+ ++G+ +F ++ VA P+E T V+ AC L GR+ MI
Sbjct: 279 AGYVQSRCFDKGMLVFEEMLKSDVA-----PNEKTLSSVLSACAHVGALHRGRRVHCYMI 333
Query: 353 DFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDN 391
I+ N + +LY EEA + ++ E N
Sbjct: 334 K-NSIEINTTAGTTLIDLYVKCGCLEEAILVFERLHEKN 371
>gi|326520249|dbj|BAK07383.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 637
Score = 229 bits (583), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 120/393 (30%), Positives = 215/393 (54%), Gaps = 11/393 (2%)
Query: 86 NSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMF 145
+ + VS+ +CA G + HG + +GV+ + + N++++ Y G M+ AR +F
Sbjct: 171 DRFAVVSVASACAGMGALRPLREMHGAVVVSGVEVTVIMANAMVDAYSKAGRMEDARTLF 230
Query: 146 VQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLK 205
QMS +D +SW S+++G+ R+ + A +F +MPE++ ++W +ISG+ ++G +L
Sbjct: 231 NQMSIQDTVSWTSMIAGYCRAKRLDEAIRVFHMMPEQDTIAWTALISGHEQNGEEDAALD 290
Query: 206 LFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTV--RTSLKP-NIILDTALID 262
LF++M+ G + S L AC + GR VHG+ + R L P NI + ALID
Sbjct: 291 LFQQMLVEGMAPTPFALVSSLGACAKLGLVTRGREVHGFILRRRIGLDPFNIFIHNALID 350
Query: 263 LYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSIS 322
+YSKC + A VF M++R+ + WN+M+ G +G+ ++ + +F +++ V
Sbjct: 351 MYSKCGDMATAMLVFARMSERDFISWNSMVTGFSHNGQGKQSLAMFKRMLDAEV-----Q 405
Query: 323 PDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEE 382
P +TF+ V+ AC A L+T+GR+ M ++ ++P HY + EEA E
Sbjct: 406 PTYVTFLAVLTACSHAGLVTDGRRILESM-QYHGVEPRAEHYASFIDALGRNHQLEEASE 464
Query: 383 ILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVY 442
++ + + S W +LL CR G + E++A+S ++P + RY L N+Y
Sbjct: 465 FIKGLSSRIGPGTTGS--WGALLGACRVHGNTEIAEKVAESLFQLEPGNSGRYVMLSNIY 522
Query: 443 AVAGQWEDVARVRELMKKRRMGRMPGCRLVDLK 475
A AGQW+D R+R +MK++ + + C ++++
Sbjct: 523 AAAGQWDDARRIRAIMKEKGLRKDQACSWIEVR 555
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 73/275 (26%), Positives = 131/275 (47%), Gaps = 34/275 (12%)
Query: 106 GGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVR 165
G H L LK ++ + N LI +Y + +R F + R+ S+N++++ R
Sbjct: 51 GRAAHALLLKTALNHHTLLSNRLIELYAMLNSPAASRTAFEDLPYRNAHSYNNLLAALSR 110
Query: 166 -SGDMSAAHELFDIMP--ERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTM 222
S + A L D MP RNVVS+N +IS +++G G +L++F + + G + +
Sbjct: 111 GSATLPDALHLLDAMPASSRNVVSYNTIISALARNGRQGEALRVFARLARDRCLGPEVAL 170
Query: 223 -----ASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVF 277
SV +AC R +HG V + ++ +I+ A++D YSK ++E A+ +F
Sbjct: 171 DRFAVVSVASACAGMGALRPLREMHGAVVVSGVEVTVIMANAMVDAYSKAGRMEDARTLF 230
Query: 278 DSMADRNLVCWNAMILGHCIHGKPEEGIKLF-----------TALVNGTVAGGS------ 320
+ M+ ++ V W +MI G+C + +E I++F TAL++G G
Sbjct: 231 NQMSIQDTVSWTSMIAGYCRAKRLDEAIRVFHMMPEQDTIAWTALISGHEQNGEEDAALD 290
Query: 321 ---------ISPDEITFIGVICACVRAELLTEGRK 346
++P + + AC + L+T GR+
Sbjct: 291 LFQQMLVEGMAPTPFALVSSLGACAKLGLVTRGRE 325
Score = 104 bits (260), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 77/282 (27%), Positives = 120/282 (42%), Gaps = 40/282 (14%)
Query: 38 DYTVLVFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSC 97
D + VF + T A+I + + D + + QM+ G P + VS G+C
Sbjct: 255 DEAIRVFHMMPEQDTIAWTALISGHEQNGEEDAALDLFQQMLVEGMAPTPFALVSSLGAC 314
Query: 98 AKTGCVERGGMCHGLALKN--GVD-FELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLI 154
AK G V RG HG L+ G+D F + + N+LI+MY G M A +F +MS RD I
Sbjct: 315 AKLGLVTRGREVHGFILRRRIGLDPFNIFIHNALIDMYSKCGDMATAMLVFARMSERDFI 374
Query: 155 SWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSG 214
SWNS M++G+S +G SL +F+ M+ +
Sbjct: 375 SWNS-------------------------------MVTGFSHNGQGKQSLAMFKRMLDAE 403
Query: 215 FRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQ 274
+ T +VLTAC + +GR + ++P + ID + ++E A
Sbjct: 404 VQPTYVTFLAVLTACSHAGLVTDGRRILESMQYHGVEPRAEHYASFIDALGRNHQLEEAS 463
Query: 275 RVFDSMADR----NLVCWNAMILGHC-IHGKPEEGIKLFTAL 311
++ R W A+ LG C +HG E K+ +L
Sbjct: 464 EFIKGLSSRIGPGTTGSWGAL-LGACRVHGNTEIAEKVAESL 504
>gi|357116278|ref|XP_003559909.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g48910-like [Brachypodium distachyon]
Length = 585
Score = 229 bits (583), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 138/436 (31%), Positives = 225/436 (51%), Gaps = 24/436 (5%)
Query: 71 GVVFYLQMIKNGFMP-NSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELP-----V 124
G + + +++GF + + +L AKT E +AL E P +
Sbjct: 66 GASLHARALRSGFAAADLFVRTALVEMYAKTAAGE-------IALARAAFDEAPRRDVFL 118
Query: 125 MNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNV 184
N ++ Y G + AR +F MS RDL+SWN+++ G+ GD+ A E+FD +R+
Sbjct: 119 CNVMLAAYVARGEVAEARKVFDGMSGRDLVSWNTMIHGYAVRGDVGMAREIFDGTRDRDA 178
Query: 185 VSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGY 244
SW+ MIS Y+K +L+L+REM +G + +M SVL+AC G VH +
Sbjct: 179 FSWSSMISAYAKGRCSKEALELWREMRVAGVAPDCISMVSVLSACSAMGALAIGAEVHRF 238
Query: 245 TVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEG 304
++ ++ L TAL+D+Y+KC +E + +VF +M ++++ W++MI+G HG +
Sbjct: 239 VESNRVEVDMKLGTALVDMYAKCGDIENSLKVFHAMPVKDVLTWSSMIIGLANHGLGHDA 298
Query: 305 IKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHY 364
+ LF+ +++ + P+EITFIGV+ AC L+ +G+KYF M D + + P HY
Sbjct: 299 LSLFSEMIS-----QGLQPNEITFIGVLIACTHVGLVNDGKKYFSSMSDVHGVVPRMEHY 353
Query: 365 WCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSF 424
CM +L A EEA E++R M D I+W +LL CR V + E
Sbjct: 354 GCMVDLLGRAGHVEEAMELIRSMTFKPD-----PIIWRTLLGACRIHKNVEIAEEAMAKL 408
Query: 425 VDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLKEVVEKLKVG 484
+DP Y L N+YA A WE VA +R+ +++ + R+PG ++ + V + G
Sbjct: 409 KVLDPLADGHYVLLSNIYAQANSWEGVAEMRKTIRRENIQRVPGRSSIEWENTVHEFVSG 468
Query: 485 HFWRGGMKEEVNKMME 500
+ EE+ KM+E
Sbjct: 469 DRSHPRI-EEIYKMLE 483
Score = 74.3 bits (181), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 61/269 (22%), Positives = 109/269 (40%), Gaps = 47/269 (17%)
Query: 43 VFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGC 102
+F + F +++I AY+ + + + +M G P+ + VS+ +C+ G
Sbjct: 169 IFDGTRDRDAFSWSSMISAYAKGRCSKEALELWREMRVAGVAPDCISMVSVLSACSAMGA 228
Query: 103 VERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSG 162
+ G H N V+ ++ + +L++MY G ++ + +F M +D+++W+S
Sbjct: 229 LAIGAEVHRFVESNRVEVDMKLGTALVDMYAKCGDIENSLKVFHAMPVKDVLTWSS---- 284
Query: 163 HVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTM 222
MI G + G +L LF EM+ G + N+ T
Sbjct: 285 ---------------------------MIIGLANHGLGHDALSLFSEMISQGLQPNEITF 317
Query: 223 ASVLTACGRSARFNEGR-------SVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQR 275
VL AC N+G+ VHG P + ++DL + VE A
Sbjct: 318 IGVLIACTHVGLVNDGKKYFSSMSDVHGVV------PRMEHYGCMVDLLGRAGHVEEAME 371
Query: 276 VFDSMADR-NLVCWNAMILGHC-IHGKPE 302
+ SM + + + W + LG C IH E
Sbjct: 372 LIRSMTFKPDPIIWRTL-LGACRIHKNVE 399
>gi|334188487|ref|NP_200728.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75170817|sp|Q9FIF7.1|PP435_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
At5g59200, chloroplastic; Flags: Precursor
gi|9759241|dbj|BAB09765.1| unnamed protein product [Arabidopsis thaliana]
gi|332009773|gb|AED97156.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 544
Score = 229 bits (583), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 132/465 (28%), Positives = 226/465 (48%), Gaps = 14/465 (3%)
Query: 20 NSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMI 79
++F L++ + S DY VF ++NP + A+I + +S GV Y +MI
Sbjct: 60 DAFVVFELIRVCSTLDSVDYAYDVFSYVSNPNVYLYTAMIDGFVSSGRSADGVSLYHRMI 119
Query: 80 KNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMD 139
N +P++Y S+ +C C E H LK G V ++ +YG G +
Sbjct: 120 HNSVLPDNYVITSVLKACDLKVCRE----IHAQVLKLGFGSSRSVGLKMMEIYGKSGELV 175
Query: 140 CARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGN 199
A+ MF +M RD ++ +++ + G + A ELF + ++ V W MI G ++
Sbjct: 176 NAKKMFDEMPDRDHVAATVMINCYSECGFIKEALELFQDVKIKDTVCWTAMIDGLVRNKE 235
Query: 200 PGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTA 259
+L+LFREM N+ T VL+AC GR VH + ++ + + A
Sbjct: 236 MNKALELFREMQMENVSANEFTAVCVLSACSDLGALELGRWVHSFVENQRMELSNFVGNA 295
Query: 260 LIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGG 319
LI++YS+C + A+RVF M D++++ +N MI G +HG E I F +VN
Sbjct: 296 LINMYSRCGDINEARRVFRVMRDKDVISYNTMISGLAMHGASVEAINEFRDMVN-----R 350
Query: 320 SISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEE 379
P+++T + ++ AC LL G + F M + ++P HY C+ +L EE
Sbjct: 351 GFRPNQVTLVALLNACSHGGLLDIGLEVFNSMKRVFNVEPQIEHYGCIVDLLGRVGRLEE 410
Query: 380 AEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLL 439
A + +P + D+ IM +LLS C+ G + + E++AK + + D Y L
Sbjct: 411 AYRFIENIPIEPDH-----IMLGTLLSACKIHGNMELGEKIAKRLFESENPDSGTYVLLS 465
Query: 440 NVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLKEVVEKLKVG 484
N+YA +G+W++ +RE M+ + + PGC +++ + + VG
Sbjct: 466 NLYASSGKWKESTEIRESMRDSGIEKEPGCSTIEVDNQIHEFLVG 510
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 66/299 (22%), Positives = 116/299 (38%), Gaps = 66/299 (22%)
Query: 220 KTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDS 279
KT+ SVL +C A S+H +RT + + LI + S V+ A VF
Sbjct: 30 KTLISVLRSCKNIAHVP---SIHAKIIRTFHDQDAFVVFELIRVCSTLDSVDYAYDVFSY 86
Query: 280 MADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICAC---- 335
+++ N+ + AMI G G+ +G+ L+ +++ +V PD V+ AC
Sbjct: 87 VSNPNVYLYTAMIDGFVSSGRSADGVSLYHRMIHNSVL-----PDNYVITSVLKACDLKV 141
Query: 336 ---VRAELLTEG----RKYFRQMIDFYKIK-------------PNFAHYWC--MANLYAG 373
+ A++L G R +M++ Y P+ H M N Y+
Sbjct: 142 CREIHAQVLKLGFGSSRSVGLKMMEIYGKSGELVNAKKMFDEMPDRDHVAATVMINCYSE 201
Query: 374 AELTEEAEEILRKMPEDN-----------------------------DNMSFESIMWVSL 404
+EA E+ + + + +N+S V +
Sbjct: 202 CGFIKEALELFQDVKIKDTVCWTAMIDGLVRNKEMNKALELFREMQMENVSANEFTAVCV 261
Query: 405 LSLCRFQGAVAMVERLAKSFVDMDPQDFSRY--QFLLNVYAVAGQWEDVARVRELMKKR 461
LS C GA+ + R SFV+ + S + L+N+Y+ G + RV +M+ +
Sbjct: 262 LSACSDLGALEL-GRWVHSFVENQRMELSNFVGNALINMYSRCGDINEARRVFRVMRDK 319
>gi|125601229|gb|EAZ40805.1| hypothetical protein OsJ_25283 [Oryza sativa Japonica Group]
Length = 492
Score = 229 bits (583), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 120/359 (33%), Positives = 198/359 (55%), Gaps = 10/359 (2%)
Query: 126 NSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVV 185
N ++ Y + AR +F M RDL+SWN+++ G+ G++ A E+FD +R+
Sbjct: 27 NVMLAAYVSRSEVAEARKVFDGMPMRDLVSWNTMIHGYAMRGEVGLAREIFDGTEDRDAF 86
Query: 186 SWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYT 245
SW+ MIS Y+KS +L+L+REM + + T+ SV++AC G VH +
Sbjct: 87 SWSSMISAYAKSRRSKEALELWREMHAASIIPDCITLVSVVSACSDLGALAVGAEVHRFV 146
Query: 246 VRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGI 305
++ ++ L TALID+Y+KC +E AQRVFD M ++++ W++MI+G HG E +
Sbjct: 147 ESNRIELDLKLGTALIDMYAKCGDIESAQRVFDRMPEKDVQTWSSMIIGLANHGLGHESL 206
Query: 306 KLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYW 365
LF+ +++ + P+ +TF+GV+ AC L++EG+KYFR M + + I+P HY
Sbjct: 207 SLFSKMIS-----EGMKPNGVTFVGVLIACTHVGLVSEGKKYFRSMNEVHGIEPTVEHYG 261
Query: 366 CMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFV 425
CM +L + EEA +++R M + D +I+W +LL CR V + E
Sbjct: 262 CMVDLLGRSGHVEEARQLIRSMTFEPD-----TIIWRALLGACRIHKNVEIAEEAMAKLR 316
Query: 426 DMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLKEVVEKLKVG 484
+DP Y L N+YA A WE VA +R+ +++ + R+PG ++ E + + G
Sbjct: 317 VLDPLGDGHYVLLSNIYAQANSWEGVAEMRKTIRRDNIQRIPGRSSIEWDEKIHEFVSG 375
Score = 85.5 bits (210), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 65/269 (24%), Positives = 115/269 (42%), Gaps = 47/269 (17%)
Query: 43 VFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGC 102
+F + F +++I AY+ S + + + +M +P+ T VS+ +C+ G
Sbjct: 76 IFDGTEDRDAFSWSSMISAYAKSRRSKEALELWREMHAASIIPDCITLVSVVSACSDLGA 135
Query: 103 VERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSG 162
+ G H N ++ +L + +LI+MY G ++ A+ +F +M +D+ +W+S
Sbjct: 136 LAVGAEVHRFVESNRIELDLKLGTALIDMYAKCGDIESAQRVFDRMPEKDVQTWSS---- 191
Query: 163 HVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTM 222
MI G + G SL LF +M+ G + N T
Sbjct: 192 ---------------------------MIIGLANHGLGHESLSLFSKMISEGMKPNGVTF 224
Query: 223 ASVLTACGRSARFNEGR-------SVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQR 275
VL AC +EG+ VHG ++P + ++DL + VE A++
Sbjct: 225 VGVLIACTHVGLVSEGKKYFRSMNEVHG------IEPTVEHYGCMVDLLGRSGHVEEARQ 278
Query: 276 VFDSMA-DRNLVCWNAMILGHC-IHGKPE 302
+ SM + + + W A+ LG C IH E
Sbjct: 279 LIRSMTFEPDTIIWRAL-LGACRIHKNVE 306
>gi|255575746|ref|XP_002528772.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223531775|gb|EEF33594.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 676
Score = 229 bits (583), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 134/469 (28%), Positives = 233/469 (49%), Gaps = 47/469 (10%)
Query: 43 VFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNG-FMPNSYTFVSLFGSCAKTG 101
+F+ + A+I ++ + + ++ +L+M + PN TF+SL +CA G
Sbjct: 187 LFRTMPKRNIVSWTAMIGGFTWNGFYEDALLLFLEMKRGADITPNIETFISLAYACAGLG 246
Query: 102 CVERGGMCHGLALKNGVD-----------------------------------FELPVMN 126
G H + G+D + + N
Sbjct: 247 FHRLGKQLHARLITEGLDNDDYDGRLSKGLICMYSSIGFMDYAHYIFNKNSNYYVVQSCN 306
Query: 127 SLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVS 186
+IN Y G +D A+N+F M RD I+W S++ G++ G++S A LF MPE++ V+
Sbjct: 307 YMINGYIRIGLLDKAQNLFDTMPVRDKITWTSMIDGYLVIGNVSEACSLFLYMPEKDAVA 366
Query: 187 WNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTV 246
W MISG+ ++ + LF EM+ G R T A + A G A ++GR +H
Sbjct: 367 WTTMISGHVRNELFAEATYLFSEMLTQGVRPLSSTYAILFGAAGAVASLDQGRQLHAMLT 426
Query: 247 RTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIK 306
+T ++IL+ +LI +Y+KC ++ A R+F M +L+ WN+MI+G HG E ++
Sbjct: 427 KTLSDNDLILENSLISMYAKCGEIRNAYRIFSQMISHDLISWNSMIMGFSHHGLANEALE 486
Query: 307 LFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWC 366
+F A+V+ P+ +TF+GV+ AC A L+ +G + F M D + ++P HY C
Sbjct: 487 VFEAMVD-----SGTHPNSVTFLGVLSACSHAGLINQGWEIFNAMSDVFAVQPGLEHYIC 541
Query: 367 MANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVA-MVERLAKSFV 425
M NL A +EAEE++ +P + ++ +W +LL +C F A + +R A +
Sbjct: 542 MVNLLGRAGKLKEAEELILGLPLERNHA-----IWGALLGVCSFSEKNADIAKRAATRIL 596
Query: 426 DMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDL 474
++DP + + L N+YA +GQ + ++R+ M + + ++PGC + L
Sbjct: 597 ELDPLNAPAHVLLCNIYAASGQHIEEHKLRKEMGLKGVKKVPGCSWIVL 645
Score = 103 bits (257), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 93/351 (26%), Positives = 146/351 (41%), Gaps = 60/351 (17%)
Query: 92 SLFGSCAKTGCVERGGMCHGLALKNG-------VDFELPVMNS-----LINMYGCFGAMD 139
SLF V M GL ++NG V E PV N+ +I Y G M+
Sbjct: 93 SLFEEMPDRNVVSWNAMIVGL-IRNGDLEAARMVFDESPVKNAASWNGMIAGYAENGRME 151
Query: 140 CARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGN 199
AR +F +M R++I+W S+VSG+ R+G++ + LF MP+RN+VSW MI G++ +G
Sbjct: 152 EARALFDEMEDRNVITWTSMVSGYCRAGEVEEGYHLFRTMPKRNIVSWTAMIGGFTWNGF 211
Query: 200 PGCSLKLFREMMK-SGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNII--- 255
+L LF EM + + N +T S+ AC G+ +H + L +
Sbjct: 212 YEDALLLFLEMKRGADITPNIETFISLAYACAGLGFHRLGKQLHARLITEGLDNDDYDGR 271
Query: 256 LDTALIDLYS--------------------------------KCQKVEVAQRVFDSMADR 283
L LI +YS + ++ AQ +FD+M R
Sbjct: 272 LSKGLICMYSSIGFMDYAHYIFNKNSNYYVVQSCNYMINGYIRIGLLDKAQNLFDTMPVR 331
Query: 284 NLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTE 343
+ + W +MI G+ + G E LF + D + + +I VR EL E
Sbjct: 332 DKITWTSMIDGYLVIGNVSEACSLFLYMP---------EKDAVAWTTMISGHVRNELFAE 382
Query: 344 GRKYFRQMID--FYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDND 392
F +M+ + +A + A A + + +L K DND
Sbjct: 383 ATYLFSEMLTQGVRPLSSTYAILFGAAGAVASLDQGRQLHAMLTKTLSDND 433
Score = 102 bits (255), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 77/258 (29%), Positives = 124/258 (48%), Gaps = 48/258 (18%)
Query: 126 NSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVV 185
SL++ Y G +D AR +F M R+ +S+N+++SG ++ G +S A +LF+ MPERNVV
Sbjct: 14 TSLLSKYSRSGFVDEARALFDIMPERNAVSYNALLSGLLQCGRLSEAMKLFEEMPERNVV 73
Query: 186 SWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYT 245
SW M+ G + +G + LF EM N + +++ R+ R V +
Sbjct: 74 SWTSMLCGLADAGKICEAKSLFEEMPDR----NVVSWNAMIVGLIRNGDLEAARMVFDES 129
Query: 246 -VRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEG 304
V+ + N +I Y++ ++E A+ +FD M DRN++ W +M+ G+C G+ EEG
Sbjct: 130 PVKNAASWN-----GMIAGYAENGRMEEARALFDEMEDRNVITWTSMVSGYCRAGEVEEG 184
Query: 305 IKLF-----------TALVNGTV----------------AGGSISPDEITFIGVICAC-- 335
LF TA++ G G I+P+ TFI + AC
Sbjct: 185 YHLFRTMPKRNIVSWTAMIGGFTWNGFYEDALLLFLEMKRGADITPNIETFISLAYACAG 244
Query: 336 ---------VRAELLTEG 344
+ A L+TEG
Sbjct: 245 LGFHRLGKQLHARLITEG 262
Score = 55.8 bits (133), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 54/217 (24%), Positives = 94/217 (43%), Gaps = 26/217 (11%)
Query: 179 MPERN----VVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSAR 234
MP+R+ +V W ++S YS+SG + LF M + N + ++L+ + R
Sbjct: 1 MPKRSPLSRIVYWTSLLSKYSRSGFVDEARALFDIMPER----NAVSYNALLSGLLQCGR 56
Query: 235 FNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILG 294
+E + + N++ T+++ + K+ A+ +F+ M DRN+V WNAMI+G
Sbjct: 57 LSEAMKL----FEEMPERNVVSWTSMLCGLADAGKICEAKSLFEEMPDRNVVSWNAMIVG 112
Query: 295 HCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDF 354
+G E +F S + ++ G+I + E R F +M D
Sbjct: 113 LIRNGDLEAARMVFDE---------SPVKNAASWNGMIAGYAENGRMEEARALFDEMED- 162
Query: 355 YKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDN 391
N + M + Y A EE + R MP+ N
Sbjct: 163 ----RNVITWTSMVSGYCRAGEVEEGYHLFRTMPKRN 195
Score = 41.2 bits (95), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 48/232 (20%), Positives = 105/232 (45%), Gaps = 20/232 (8%)
Query: 1 MKQLLQIQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIK 60
+ Q Q+ A ++T L N+ +L+ A G +F + + N++I
Sbjct: 415 LDQGRQLHA-MLTKTLSDNDLILENSLISMYAKCGEIRNAYRIFSQMISHDLISWNSMIM 473
Query: 61 AYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERG-----GMCHGLALK 115
+S+ + ++ + + M+ +G PNS TF+ + +C+ G + +G M A++
Sbjct: 474 GFSHHGLANEALEVFEAMVDSGTHPNSVTFLGVLSACSHAGLINQGWEIFNAMSDVFAVQ 533
Query: 116 NGVDFELPVMNSLINMYGCFGAMDCARNMFVQMS-PRDLISWNSIV---SGHVRSGDMS- 170
G++ + ++N+ G G + A + + + R+ W +++ S ++ D++
Sbjct: 534 PGLEHYI----CMVNLLGRAGKLKEAEELILGLPLERNHAIWGALLGVCSFSEKNADIAK 589
Query: 171 -AAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKT 221
AA + ++ P N + ++ + Y+ SG KL +EM G +G K
Sbjct: 590 RAATRILELDP-LNAPAHVLLCNIYAASGQHIEEHKLRKEM---GLKGVKKV 637
>gi|449458783|ref|XP_004147126.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g11290-like [Cucumis sativus]
Length = 821
Score = 229 bits (583), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 127/450 (28%), Positives = 224/450 (49%), Gaps = 41/450 (9%)
Query: 35 GSPDYTVLVFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLF 94
GS + L+F ++ N+++ Y + P++ + + +M++ G P T +
Sbjct: 297 GSVETARLIFDGMDQKTVVSWNSMMDGYVQNGEPEKAIAVFEKMLEEGIDPTGVTIMEAL 356
Query: 95 GSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLI 154
+CA G +ERG H + + ++ VMNSLI+MY C R
Sbjct: 357 HACADLGDLERGKFVHKFVDQLNLGSDISVMNSLISMYS-----KCKR------------ 399
Query: 155 SWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSG 214
+ A ++F+ + R VSWN MI GY+++G +L F EM G
Sbjct: 400 --------------VDIASDIFNNLNGRTHVSWNAMILGYAQNGRVSEALNCFSEMKSLG 445
Query: 215 FRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQ 274
+ + TM SV+ A + + +HG +R+ L NI + TAL+D+YSKC + +A+
Sbjct: 446 MKPDSFTMVSVIPALAELSVTRHAKWIHGLIIRSCLDKNIFVTTALVDMYSKCGAIHMAR 505
Query: 275 RVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICA 334
++FD ++DR+++ WNAMI G+ HG + LF + G++ P++IT++ VI A
Sbjct: 506 KLFDMISDRHVITWNAMIDGYGTHGLGRAALDLFDKM-----KKGAVEPNDITYLSVISA 560
Query: 335 CVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNM 394
C + L+ EG ++F+ M Y ++P+ HY M +L A +EA + + MP +
Sbjct: 561 CSHSGLVDEGLRHFKSMKQDYGLEPSMDHYGAMVDLLGRAGRIKEAWDFIENMP-----I 615
Query: 395 SFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARV 454
S ++ + C+ + + E+ AK +++P + + L N+YA +W VA V
Sbjct: 616 SPGITVYGAXXGACKIHKNIEVGEKAAKKLFELNPDEGGYHVLLANIYASTSKWSKVAEV 675
Query: 455 RELMKKRRMGRMPGCRLVDLKEVVEKLKVG 484
R+ M+K+ + + PGC +V+L+ V G
Sbjct: 676 RKTMEKKGLKKTPGCSVVELRNEVHSFYSG 705
Score = 157 bits (396), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 99/387 (25%), Positives = 179/387 (46%), Gaps = 38/387 (9%)
Query: 1 MKQLLQIQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIK 60
MK+L QI +I +GL+ N + L+ + +GS + VF+ I++ + ++K
Sbjct: 62 MKELHQIIPLVIKNGLY-NEHLFQTKLVSLFSKYGSINEAARVFEPIDDKLDALYHTMLK 120
Query: 61 AYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDF 120
Y+ + + + F +M + P Y F L C ++RG HG + N
Sbjct: 121 GYAKNSSLETALAFLCRMRYDDVKPVVYNFTYLLKVCGDNADLKRGKEIHGQLITNSFAA 180
Query: 121 ELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMP 180
+ M ++NMY + + A+++FD MP
Sbjct: 181 NVFAMTGVVNMYA-------------------------------KCRQIDDAYKMFDRMP 209
Query: 181 ERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRS 240
ER++VSWN +I+G+S++G +L+L M G R + T+ +VL A G+S
Sbjct: 210 ERDLVSWNTIIAGFSQNGFAKKALELVLRMQDEGQRPDSITLVTVLPAAADVGLLMVGKS 269
Query: 241 VHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGK 300
+HGY +R + + TAL D+YSKC VE A+ +FD M + +V WN+M+ G+ +G+
Sbjct: 270 IHGYAIRAGFAKLVNISTALADMYSKCGSVETARLIFDGMDQKTVVSWNSMMDGYVQNGE 329
Query: 301 PEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPN 360
PE+ I +F ++ I P +T + + AC L G K+ + +D + +
Sbjct: 330 PEKAIAVFEKMLE-----EGIDPTGVTIMEALHACADLGDLERG-KFVHKFVDQLNLGSD 383
Query: 361 FAHYWCMANLYAGAELTEEAEEILRKM 387
+ + ++Y+ + + A +I +
Sbjct: 384 ISVMNSLISMYSKCKRVDIASDIFNNL 410
Score = 129 bits (325), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 92/353 (26%), Positives = 160/353 (45%), Gaps = 40/353 (11%)
Query: 1 MKQLLQIQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIK 60
+K+ +I LIT+ F N F ++ A D +F + N +I
Sbjct: 163 LKRGKEIHGQLITNS-FAANVFAMTGVVNMYAKCRQIDDAYKMFDRMPERDLVSWNTIIA 221
Query: 61 AYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDF 120
+S + + + L+M G P+S T V++ + A G + G HG A++ G
Sbjct: 222 GFSQNGFAKKALELVLRMQDEGQRPDSITLVTVLPAAADVGLLMVGKSIHGYAIRAGFAK 281
Query: 121 ELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMP 180
+ + +L +MY G+++ AR +FD M
Sbjct: 282 LVNISTALADMYSKCGSVETAR-------------------------------LIFDGMD 310
Query: 181 ERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRS 240
++ VVSWN M+ GY ++G P ++ +F +M++ G T+ L AC G+
Sbjct: 311 QKTVVSWNSMMDGYVQNGEPEKAIAVFEKMLEEGIDPTGVTIMEALHACADLGDLERGKF 370
Query: 241 VHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGK 300
VH + + +L +I + +LI +YSKC++V++A +F+++ R V WNAMILG+ +G+
Sbjct: 371 VHKFVDQLNLGSDISVMNSLISMYSKCKRVDIASDIFNNLNGRTHVSWNAMILGYAQNGR 430
Query: 301 PEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAEL-LTEGRKYFRQMI 352
E + F+ + + PD T + VI A AEL +T K+ +I
Sbjct: 431 VSEALNCFSEM-----KSLGMKPDSFTMVSVIPAL--AELSVTRHAKWIHGLI 476
Score = 88.2 bits (217), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 64/276 (23%), Positives = 126/276 (45%), Gaps = 24/276 (8%)
Query: 159 IVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGN 218
+VS + G ++ A +F+ + ++ ++ M+ GY+K+ + +L M +
Sbjct: 87 LVSLFSKYGSINEAARVFEPIDDKLDALYHTMLKGYAKNSSLETALAFLCRMRYDDVKPV 146
Query: 219 DKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFD 278
+L CG +A G+ +HG + S N+ T ++++Y+KC++++ A ++FD
Sbjct: 147 VYNFTYLLKVCGDNADLKRGKEIHGQLITNSFAANVFAMTGVVNMYAKCRQIDDAYKMFD 206
Query: 279 SMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRA 338
M +R+LV WN +I G +G ++ ++L + + PD IT + V+ A
Sbjct: 207 RMPERDLVSWNTIIAGFSQNGFAKKALELVLRMQD-----EGQRPDSITLVTVLPAAADV 261
Query: 339 ELLTEGRKYFRQMIDFYKIKPNFAHY----WCMANLYAGAELTEEAEEILRKMPEDNDNM 394
LL G+ I Y I+ FA +A++Y+ E A I M +
Sbjct: 262 GLLMVGKS-----IHGYAIRAGFAKLVNISTALADMYSKCGSVETARLIFDGMDQKT--- 313
Query: 395 SFESIMWVSLLSLCRFQG----AVAMVERLAKSFVD 426
+ W S++ G A+A+ E++ + +D
Sbjct: 314 ---VVSWNSMMDGYVQNGEPEKAIAVFEKMLEEGID 346
Score = 42.0 bits (97), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 53/235 (22%), Positives = 97/235 (41%), Gaps = 30/235 (12%)
Query: 11 LITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSNSCVPDQ 70
LI N F T L+ + G+ +F I++ NA+I Y +
Sbjct: 475 LIIRSCLDKNIFVTTALVDMYSKCGAIHMARKLFDMISDRHVITWNAMIDGYGTHGLGRA 534
Query: 71 GVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMN---S 127
+ + +M K PN T++S+ +C+ +G V+ G+ H ++K E P M+ +
Sbjct: 535 ALDLFDKMKKGAVEPNDITYLSVISACSHSGLVDE-GLRHFKSMKQDYGLE-PSMDHYGA 592
Query: 128 LINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSG------HVRSGDMSAAHELFDIMPE 181
++++ G G + A + M I+ G ++ G+ AA +LF++ P+
Sbjct: 593 MVDLLGRAGRIKEAWDFIENMPISPGITVYGAXXGACKIHKNIEVGE-KAAKKLFELNPD 651
Query: 182 R---NVVSWNIM--ISGYSKSG-------------NPGCSLKLFREMMKSGFRGN 218
+V+ NI S +SK PGCS+ R + S + G+
Sbjct: 652 EGGYHVLLANIYASTSKWSKVAEVRKTMEKKGLKKTPGCSVVELRNEVHSFYSGS 706
>gi|413925246|gb|AFW65178.1| hypothetical protein ZEAMMB73_703358 [Zea mays]
Length = 572
Score = 229 bits (583), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 123/347 (35%), Positives = 190/347 (54%), Gaps = 14/347 (4%)
Query: 126 NSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVV 185
NS++ G + AR MF +M R+L+SWN++V G+ +GD+ A ELFD MPE++VV
Sbjct: 228 NSMVAGLARHGLLPLARKMFDEMPARNLVSWNAMVRGYAVNGDVDGARELFDAMPEKDVV 287
Query: 186 SWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYT 245
SW M+SGY+++G +L+LFR M R N+ TM SV +AC R A EGR H +
Sbjct: 288 SWTCMVSGYARAGRHAQALELFRTMQSGDVRPNEVTMVSVFSACARLAALKEGRWAHAFI 347
Query: 246 VRTS--LKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEE 303
+ L L ALID+Y+KC + +VA +VF S+ +N+ WNA+I G +G
Sbjct: 348 GKRGMVLDDGFNLGAALIDMYAKCGRPDVAAKVFRSLDRKNVSAWNALIAGLAANGDARR 407
Query: 304 GIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAH 363
I +F + PD +TF+ V+ AC RA L+ EGR+ FR M + ++P H
Sbjct: 408 CIDVFEQMKVSDE-----KPDSVTFVSVLAACARAGLVDEGRRCFRSMSSGFGVQPELKH 462
Query: 364 YWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKS 423
Y CM +L A L +EAEE++R MP M+ + + +LL CR + + ER+ +
Sbjct: 463 YGCMVDLLGRAGLVDEAEELVRGMP-----MAPDDKVLATLLGACRVRRRPDVAERVRRR 517
Query: 424 FVDMDPQDFSRYQFLL--NVYAVAGQWEDVARVRELMKKRRMGRMPG 468
++ + SR + + +V A A +W + + M K + ++ G
Sbjct: 518 IQSLNTKQPSRESYFMISDVRATADRWAVALKAKGFMHKYNIMKLDG 564
Score = 130 bits (327), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 81/306 (26%), Positives = 143/306 (46%), Gaps = 13/306 (4%)
Query: 42 LVFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTG 101
L F + TF N +I+A + S P + ++++G +P+ +TF L S +K
Sbjct: 47 LYFPLFPSSATFLHNLLIRASAASPSPRLSFAAFSSLLRSGHLPDHFTFPPLAKSASKFP 106
Query: 102 CVER-GGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQ-MSPRDLISWNSI 159
R G H A + G+ + +NSL+ MY R + D++SWN++
Sbjct: 107 SFPRTGAQVHAQAARRGLLADAFAVNSLLAMYAALRDAASMRGVLESCAEAADVVSWNTV 166
Query: 160 VSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGND 219
V+G+ R G++ A FD MP RN SW+ M+ Y+ +G + +F +G +
Sbjct: 167 VAGYARCGELGNARRAFDGMPRRNGASWSAMVGAYAAAGQLDVARDMFDRAPAAGR--SV 224
Query: 220 KTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDS 279
T S++ R R + N++ A++ Y+ V+ A+ +FD+
Sbjct: 225 VTWNSMVAGLARHGLLPLARKMFDEMPAR----NLVSWNAMVRGYAVNGDVDGARELFDA 280
Query: 280 MADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAE 339
M ++++V W M+ G+ G+ + ++LF T+ G + P+E+T + V AC R
Sbjct: 281 MPEKDVVSWTCMVSGYARAGRHAQALELFR-----TMQSGDVRPNEVTMVSVFSACARLA 335
Query: 340 LLTEGR 345
L EGR
Sbjct: 336 ALKEGR 341
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 57/253 (22%), Positives = 104/253 (41%), Gaps = 43/253 (16%)
Query: 58 VIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNG 117
++ Y+ + Q + + M PN T VS+F +CA+ ++ G H K G
Sbjct: 292 MVSGYARAGRHAQALELFRTMQSGDVRPNEVTMVSVFSACARLAALKEGRWAHAFIGKRG 351
Query: 118 --VDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHEL 175
+D + +LI+MY G D A +F + +++ +WN++++G +GD A
Sbjct: 352 MVLDDGFNLGAALIDMYAKCGRPDVAAKVFRSLDRKNVSAWNALIAGLAANGD---ARRC 408
Query: 176 FDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARF 235
D+ F +M S + + T SVL AC R+
Sbjct: 409 IDV----------------------------FEQMKVSDEKPDSVTFVSVLAACARAGLV 440
Query: 236 NEGRS-VHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMA----DRNLVCWNA 290
+EGR + ++P + ++DL + V+ A+ + M D+ L A
Sbjct: 441 DEGRRCFRSMSSGFGVQPELKHYGCMVDLLGRAGLVDEAEELVRGMPMAPDDKVL----A 496
Query: 291 MILGHC-IHGKPE 302
+LG C + +P+
Sbjct: 497 TLLGACRVRRRPD 509
Score = 52.4 bits (124), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 39/158 (24%), Positives = 72/158 (45%), Gaps = 4/158 (2%)
Query: 1 MKQLLQIQAHLITSGLFFNNSF-WTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVI 59
+K+ A + G+ ++ F L+ A G PD VF+ ++ NA+I
Sbjct: 337 LKEGRWAHAFIGKRGMVLDDGFNLGAALIDMYAKCGRPDVAAKVFRSLDRKNVSAWNALI 396
Query: 60 KAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMC-HGLALKNGV 118
+ + + + + QM + P+S TFVS+ +CA+ G V+ G C ++ GV
Sbjct: 397 AGLAANGDARRCIDVFEQMKVSDEKPDSVTFVSVLAACARAGLVDEGRRCFRSMSSGFGV 456
Query: 119 DFELPVMNSLINMYGCFGAMDCARNMF--VQMSPRDLI 154
EL ++++ G G +D A + + M+P D +
Sbjct: 457 QPELKHYGCMVDLLGRAGLVDEAEELVRGMPMAPDDKV 494
>gi|357167843|ref|XP_003581359.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like, partial [Brachypodium distachyon]
Length = 745
Score = 229 bits (583), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 150/497 (30%), Positives = 239/497 (48%), Gaps = 45/497 (9%)
Query: 7 IQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSNSC 66
+QA+ G F + F +L+ A G ++F + G NA+I Y +
Sbjct: 193 VQAYAFKRG-FMVDQFVLNSLIHMYASCGDVVAAHVLFHTVQVKGVIAWNAMIAGYVKNG 251
Query: 67 VPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMN 126
+ V + M++ + T +S+ +C + G G A + G+ +
Sbjct: 252 DWKEVVEMFKGMLEVRAPFDEVTLLSVATACGRLGDANLGQWIAEYAEEKGMLRSRNLAT 311
Query: 127 SLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVS 186
+L++MY G +D AR LFD M R+VV+
Sbjct: 312 ALVDMYAKCGELDKAR-------------------------------RLFDRMHSRDVVA 340
Query: 187 WNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTV 246
W+ MISGY++S +L +F EM + ND TM SVL+AC G+ VH Y
Sbjct: 341 WSAMISGYTQSDRCREALAIFNEMQGTEVNPNDVTMVSVLSACAVLGALETGKWVHSYIR 400
Query: 247 RTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIK 306
R L +IL TAL+D Y+KC ++ A + F+SM RN W A+I G +G+ E ++
Sbjct: 401 RKDLPLTVILGTALVDFYAKCGCIKDAVKAFESMPVRNTWTWTALIKGMASNGRSREALE 460
Query: 307 LFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWC 366
LF++++ +I P ++TFIGV+ AC L+ EGR++F M Y I P HY C
Sbjct: 461 LFSSMLE-----ANIEPTDVTFIGVLLACSHGCLVEEGRRHFTSMTQDYGICPRIEHYGC 515
Query: 367 MANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVD 426
M +L A L +EA + +R MP + + +++W +LLS C V + E K V
Sbjct: 516 MVDLLGRAGLIDEAYQFIRNMPIEPN-----AVVWRALLSACTVHKNVEIGEEALKQIVP 570
Query: 427 MDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLKEVVEKL---KV 483
+DP Y L N YA GQW++ A VR+ MK++ + ++PGC L++L+ + +
Sbjct: 571 LDPCHSGNYILLSNTYASVGQWKNAAMVRKEMKEKGVEKIPGCSLIELEGTIFEFFAEDS 630
Query: 484 GHFWRGGMKEEVNKMME 500
H + E+V++M+E
Sbjct: 631 EHPQLTEIYEKVHEMIE 647
Score = 82.4 bits (202), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 51/176 (28%), Positives = 91/176 (51%), Gaps = 10/176 (5%)
Query: 166 SGDMSAAHELFDI--MPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDK-TM 222
S +S A LF + P R+ S+NI+I + ++G+P +L LF EM+ D+ T+
Sbjct: 115 SAHLSYAIRLFRLGPHPPRSARSYNILIRSFLRAGHPEDALHLFVEMLDDTAVSPDQHTV 174
Query: 223 ASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMAD 282
A+ + +C R + GR V Y + + + +LI +Y+ C V A +F ++
Sbjct: 175 ANTVKSCSRMCDLSVGRGVQAYAFKRGFMVDQFVLNSLIHMYASCGDVVAAHVLFHTVQV 234
Query: 283 RNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISP-DEITFIGVICACVR 337
+ ++ WNAMI G+ +G +E +++F ++ +P DE+T + V AC R
Sbjct: 235 KGVIAWNAMIAGYVKNGDWKEVVEMFKGMLEVR------APFDEVTLLSVATACGR 284
>gi|225444173|ref|XP_002268853.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g21300-like [Vitis vinifera]
Length = 853
Score = 228 bits (582), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 125/424 (29%), Positives = 218/424 (51%), Gaps = 41/424 (9%)
Query: 56 NAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALK 115
A+I Y + + + + + +++ NS T S+ +CA + G HG LK
Sbjct: 419 TAMISGYVLNGMNNNALEIFRWLLQERMRANSVTLASVLPACAGLAALTLGKELHGHILK 478
Query: 116 NGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHEL 175
NG V +++++MY + G + AH+
Sbjct: 479 NGHGGSCYVGSAIMDMYA-------------------------------KCGRLDLAHQT 507
Query: 176 FDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARF 235
F + +++ V WN MI+ S++G P ++ LFR+M +G + + ++++ L+AC
Sbjct: 508 FIGISDKDAVCWNSMITSCSQNGKPEEAIDLFRQMGMAGTKYDCVSISAALSACANLPAL 567
Query: 236 NEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGH 295
+ G+ +H + +R + + ++ ++ALID+YSKC +++A RVFD+M ++N V WN++I +
Sbjct: 568 HYGKEIHAFMMRGAFRSDLFAESALIDMYSKCGNLDLACRVFDTMEEKNEVSWNSIIAAY 627
Query: 296 CIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFY 355
HG+ ++ + LF ++ G I PD +TF+ +I AC A + EG YFR M +
Sbjct: 628 GNHGRLKDSLNLFHGML-----GDGIQPDHVTFLAIISACGHAGQVDEGIHYFRCMTEEL 682
Query: 356 KIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVA 415
I HY CM +L+ A EA ++ MP S ++ +W +LL CR G V
Sbjct: 683 GIMARMEHYACMVDLFGRAGRLNEAFGMINSMP-----FSPDAGVWGTLLGACRLHGNVE 737
Query: 416 MVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLK 475
+ E +++ D+DPQ+ Y L NV+A AGQWE V ++R LMK+R + ++PGC +D+
Sbjct: 738 LAEVASRNLFDLDPQNSGYYVLLSNVHANAGQWESVLKIRSLMKERGVQKVPGCSWIDVN 797
Query: 476 EVVE 479
Sbjct: 798 NTTH 801
Score = 131 bits (329), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 79/291 (27%), Positives = 138/291 (47%), Gaps = 36/291 (12%)
Query: 56 NAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALK 115
N ++ Y + D +++M + PNS TF + CA + G HGL +
Sbjct: 217 NVMLNGYVKNGDWDNATGVFMEMRRTETNPNSVTFACVLSVCASEIMINFGSQLHGLVVS 276
Query: 116 NGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHEL 175
+G++ + PV N+L+ MY + G + A L
Sbjct: 277 SGLEMDSPVANTLLAMYA-------------------------------KCGHLFDARRL 305
Query: 176 FDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARF 235
FD+MP+ ++V+WN MISGY ++G + LF EM+ + + + T +S L A
Sbjct: 306 FDMMPKTDLVTWNGMISGYVQNGFMDEASCLFHEMISARMKPDSITFSSFLPLLSEGATL 365
Query: 236 NEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGH 295
+G+ +H Y +R + ++ L +ALID+Y KC+ VE+A+++FD ++V AMI G+
Sbjct: 366 RQGKEIHCYIIRNGVSLDVFLKSALIDIYFKCRDVEMARKIFDQRTPVDIVVCTAMISGY 425
Query: 296 CIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRK 346
++G +++F L+ + S +T V+ AC LT G++
Sbjct: 426 VLNGMNNNALEIFRWLLQERMRANS-----VTLASVLPACAGLAALTLGKE 471
Score = 120 bits (302), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 88/345 (25%), Positives = 161/345 (46%), Gaps = 38/345 (11%)
Query: 56 NAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALK 115
N +I Y + D+ + +MI P+S TF S ++ + +G H ++
Sbjct: 318 NGMISGYVQNGFMDEASCLFHEMISARMKPDSITFSSFLPLLSEGATLRQGKEIHCYIIR 377
Query: 116 NGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHEL 175
NGV ++ + ++LI++Y ++ AR +F Q +P D
Sbjct: 378 NGVSLDVFLKSALIDIYFKCRDVEMARKIFDQRTPVD----------------------- 414
Query: 176 FDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARF 235
+V MISGY +G +L++FR +++ R N T+ASVL AC A
Sbjct: 415 --------IVVCTAMISGYVLNGMNNNALEIFRWLLQERMRANSVTLASVLPACAGLAAL 466
Query: 236 NEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGH 295
G+ +HG+ ++ + + +A++D+Y+KC ++++A + F ++D++ VCWN+MI
Sbjct: 467 TLGKELHGHILKNGHGGSCYVGSAIMDMYAKCGRLDLAHQTFIGISDKDAVCWNSMITSC 526
Query: 296 CIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFY 355
+GKPEE I LF + +AG D ++ + AC L G++ M+
Sbjct: 527 SQNGKPEEAIDLFRQM---GMAGTKY--DCVSISAALSACANLPALHYGKEIHAFMMRGA 581
Query: 356 KIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIM 400
FA + ++Y+ + A + M E N+ +S+ SI+
Sbjct: 582 FRSDLFAES-ALIDMYSKCGNLDLACRVFDTMEEKNE-VSWNSII 624
Score = 116 bits (291), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 78/291 (26%), Positives = 132/291 (45%), Gaps = 36/291 (12%)
Query: 56 NAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALK 115
N +I+ ++ D ++FY +M+ G +P+ YTF + +C V G + H
Sbjct: 116 NWMIRGFTMMGQFDFALLFYFKMLGCGTLPDKYTFPYVIKACGGLNSVALGRVVHDKIQF 175
Query: 116 NGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHEL 175
G + ++ V +SLI Y +G + A L
Sbjct: 176 MGFELDVFVGSSLIKFYS-------------------------------ENGCIHDARYL 204
Query: 176 FDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARF 235
FD MP ++ V WN+M++GY K+G+ + +F EM ++ N T A VL+ C
Sbjct: 205 FDRMPSKDGVLWNVMLNGYVKNGDWDNATGVFMEMRRTETNPNSVTFACVLSVCASEIMI 264
Query: 236 NEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGH 295
N G +HG V + L+ + + L+ +Y+KC + A+R+FD M +LV WN MI G+
Sbjct: 265 NFGSQLHGLVVSSGLEMDSPVANTLLAMYAKCGHLFDARRLFDMMPKTDLVTWNGMISGY 324
Query: 296 CIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRK 346
+G +E LF +++ + PD ITF + L +G++
Sbjct: 325 VQNGFMDEASCLFHEMIS-----ARMKPDSITFSSFLPLLSEGATLRQGKE 370
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 59/257 (22%), Positives = 102/257 (39%), Gaps = 36/257 (14%)
Query: 90 FVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMS 149
VS+ +C + +G H L NG+ + + L+ MY GA A+N+F Q
Sbjct: 49 LVSILQTCTDPSGLSQGRQAHAQMLVNGIGYNGILGTKLLGMYVLCGAFLDAKNIFYQ-- 106
Query: 150 PRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFRE 209
L W S WN MI G++ G +L + +
Sbjct: 107 ---LRLWCS--------------------------EPWNWMIRGFTMMGQFDFALLFYFK 137
Query: 210 MMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQK 269
M+ G + T V+ ACG GR VH + ++ + ++LI YS+
Sbjct: 138 MLGCGTLPDKYTFPYVIKACGGLNSVALGRVVHDKIQFMGFELDVFVGSSLIKFYSENGC 197
Query: 270 VEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFI 329
+ A+ +FD M ++ V WN M+ G+ +G + +F + +P+ +TF
Sbjct: 198 IHDARYLFDRMPSKDGVLWNVMLNGYVKNGDWDNATGVFMEMRRTET-----NPNSVTFA 252
Query: 330 GVICACVRAELLTEGRK 346
V+ C ++ G +
Sbjct: 253 CVLSVCASEIMINFGSQ 269
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 61/276 (22%), Positives = 113/276 (40%), Gaps = 39/276 (14%)
Query: 32 ADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFV 91
A G D F I++ C N++I + S + P++ + + QM G + +
Sbjct: 496 AKCGRLDLAHQTFIGISDKDAVCWNSMITSCSQNGKPEEAIDLFRQMGMAGTKYDCVSIS 555
Query: 92 SLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPR 151
+ +CA + G H ++ +L ++LI+MY G +D A +F M +
Sbjct: 556 AALSACANLPALHYGKEIHAFMMRGAFRSDLFAESALIDMYSKCGNLDLACRVFDTMEEK 615
Query: 152 DLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMM 211
+ +SWNSI I+ Y G SL LF M+
Sbjct: 616 NEVSWNSI-------------------------------IAAYGNHGRLKDSLNLFHGML 644
Query: 212 KSGFRGNDKTMASVLTACGRSARFNEGRSVHGY---TVRTSLKPNIILDTALIDLYSKCQ 268
G + + T ++++ACG + + +EG +H + T + + ++DL+ +
Sbjct: 645 GDGIQPDHVTFLAIISACGHAGQVDEG--IHYFRCMTEELGIMARMEHYACMVDLFGRAG 702
Query: 269 KVEVAQRVFDSMA-DRNLVCWNAMILGHC-IHGKPE 302
++ A + +SM + W + LG C +HG E
Sbjct: 703 RLNEAFGMINSMPFSPDAGVWGTL-LGACRLHGNVE 737
Score = 45.8 bits (107), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 46/193 (23%), Positives = 77/193 (39%), Gaps = 16/193 (8%)
Query: 218 NDKTMA----SVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVA 273
ND ++A S+L C + ++GR H + + N IL T L+ +Y C A
Sbjct: 41 NDDSLAPQLVSILQTCTDPSGLSQGRQAHAQMLVNGIGYNGILGTKLLGMYVLCGAFLDA 100
Query: 274 QRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVIC 333
+ +F + WN MI G + G+ + F L + G PD+ TF VI
Sbjct: 101 KNIFYQLRLWCSEPWNWMIRGFTMMGQFD-----FALLFYFKMLGCGTLPDKYTFPYVIK 155
Query: 334 ACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDN 393
AC + GR I F + + + Y+ +A + +MP
Sbjct: 156 ACGGLNSVALGR-VVHDKIQFMGFELDVFVGSSLIKFYSENGCIHDARYLFDRMP----- 209
Query: 394 MSFESIMWVSLLS 406
S + ++W +L+
Sbjct: 210 -SKDGVLWNVMLN 221
>gi|359487598|ref|XP_002278925.2| PREDICTED: pentatricopeptide repeat-containing protein At3g56550
[Vitis vinifera]
Length = 603
Score = 228 bits (582), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 146/512 (28%), Positives = 248/512 (48%), Gaps = 47/512 (9%)
Query: 1 MKQLLQIQAHLITSGLFFNNSFWT--INLLKHSADFGSPDYTVLVFKCINNPGTFCVNAV 58
M++L +I AH++ +G N S +N S GS Y LVF I+NP T N++
Sbjct: 36 MRKLHKIHAHILINGYQHNPSISEKLLNFCAVSVS-GSLAYAQLVFHRIHNPQTPAWNSM 94
Query: 59 IKAYSNSCVPDQ--GVVFYLQMIKNGFM-PNSYTFVSLFGSCAKTGCVERGGMCHGLALK 115
I+ +S S P Q +VFY M+ P++YTF L +C + + HG ++
Sbjct: 95 IRGFSQSPSPLQLQAIVFYNHMLSASHARPDTYTFSFLLKACEEAKEEGKCREVHGFIIR 154
Query: 116 NGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHEL 175
G D +D++ +++ + +G + AH++
Sbjct: 155 FGYD-------------------------------QDVVLCTNLIRSYAGNGLIETAHKV 183
Query: 176 FDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARF 235
F+ MP R++VSWN MIS Y ++G +LK++ +M S + T+ S+L++C
Sbjct: 184 FEEMPARDLVSWNSMISCYCQTGLHEEALKMYDQMRISNVGFDGFTLVSLLSSCAHVGAL 243
Query: 236 NEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGH 295
+ G +H + L NI + ALID+Y+KC + A +F+SM R++ WN+MI+G+
Sbjct: 244 HMGVQMHRFAGERRLVENIFVGNALIDMYAKCGSLASALSIFNSMPKRDVFTWNSMIVGY 303
Query: 296 CIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFY 355
+HG+ +E I F G++ + P+ ITF+G++C C L+ EG +YF M +
Sbjct: 304 GVHGRGDEAITFF-----GSMLMAGVRPNSITFLGLLCGCSHQGLVKEGVQYFHMMSSEF 358
Query: 356 KIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVA 415
+KP HY CM +L+ A +EA E++R P +D ++W +LL C+ V
Sbjct: 359 NLKPGIKHYGCMVDLFGRAGKLKEALEVIRSSPSQHD-----PVLWRTLLGSCKIHRNVE 413
Query: 416 MVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLK 475
+ E ++ V + L +YA A + VAR+R+L++ R + PG +++
Sbjct: 414 IGEMAMRNLVQLGSLGAGDCVLLSGIYAEAKDLQGVARMRKLIQSRGIKTTPGWSWIEVG 473
Query: 476 EVVEKLKVGHFWRGGMKEEVNKMMECRQSRSL 507
+ V + V +E K+ E SL
Sbjct: 474 DQVHRFVVDDKSHPDSREIYRKLEEVIHRASL 505
>gi|242082744|ref|XP_002441797.1| hypothetical protein SORBIDRAFT_08g002505 [Sorghum bicolor]
gi|241942490|gb|EES15635.1| hypothetical protein SORBIDRAFT_08g002505 [Sorghum bicolor]
Length = 839
Score = 228 bits (582), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 125/435 (28%), Positives = 226/435 (51%), Gaps = 43/435 (9%)
Query: 42 LVFKCINNPGTFCVNAVIKAY-SNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKT 100
LVF+ + + NA+I A N C D + + +M++ G P+ +T+ S+ +CA
Sbjct: 394 LVFQEMEQRDSVSWNAIIAALEQNECYEDT-IAYLNEMLRYGMEPDDFTYGSVLKACAGL 452
Query: 101 GCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIV 160
+E G + HG A+K+G+ + V +++++MY
Sbjct: 453 QSLEYGSVVHGKAIKSGLGLDAFVSSTVVDMY---------------------------- 484
Query: 161 SGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDK 220
+ G ++ A +L D + + +VSWN +ISG+S + + K F EM+ G + +
Sbjct: 485 ---CKCGMITEAQKLHDRIGGQELVSWNSIISGFSLNKQSEEAQKFFSEMLDIGVKPDHF 541
Query: 221 TMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSM 280
T A+VL C A G+ +HG ++ + + + + L+D+Y+KC + + +F+
Sbjct: 542 TYATVLDTCANLATIELGKQIHGQIIKQEMLGDEYISSTLVDMYAKCGNMPDSLLMFEKA 601
Query: 281 ADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAEL 340
+ V WNAMI G+ +HG+ E +++F + V P+ TF+ V+ AC L
Sbjct: 602 QKLDFVSWNAMICGYALHGQGFEALEMFERMQQANVV-----PNHATFVAVLRACSHVGL 656
Query: 341 LTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIM 400
L +G +YF M YK++P H+ CM ++ ++ +EA + +R MP + D +++
Sbjct: 657 LDDGCRYFYLMTSRYKLEPQLEHFACMVDILGRSKGPQEALKFIRSMPLEAD-----AVI 711
Query: 401 WVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKK 460
W +LLS+C+ + V + E A + + +DP D S Y L NVYA +G+W DV+R R LM++
Sbjct: 712 WKTLLSICKIRQDVEVAETAASNVLRLDPDDSSVYILLSNVYAESGKWVDVSRTRRLMRQ 771
Query: 461 RRMGRMPGCRLVDLK 475
R+ + PGC ++++
Sbjct: 772 GRLKKEPGCSWIEVQ 786
Score = 137 bits (346), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 100/347 (28%), Positives = 159/347 (45%), Gaps = 10/347 (2%)
Query: 89 TFVSLFGSCAKTG--CVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFV 146
TF L+ CA G + G H L +G V N L+ MY G AR +F
Sbjct: 4 TFSHLYQLCAGAGRSALATGQAAHARMLVSGFMPTTFVSNCLLQMYARCGGAAHARGVFD 63
Query: 147 QMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKL 206
M RD +SWN++++ + +GD AA LF MP+ +VVSWN ++SGY + G S+ L
Sbjct: 64 VMPHRDTVSWNTMLTAYAHAGDTGAAASLFGAMPDPDVVSWNALLSGYCQRGMFRDSVGL 123
Query: 207 FREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSK 266
EM + G + T+A +L ACG G +H V+T L+ ++ +AL+D+Y K
Sbjct: 124 SVEMARRGVAPDRTTLAVLLKACGGLEDLALGVQIHAVAVKTGLEMDVRAGSALVDMYGK 183
Query: 267 CQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEI 326
C+ +E A R F M +RN V W A I G + + G++LF + + G P
Sbjct: 184 CRSLEDALRFFHGMGERNSVSWGAAIAGCVQNEQYTRGLELFVQMQR--LGLGVSQP--- 238
Query: 327 TFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRK 386
+ V +C L+ R+ I K + + ++YA A+ +A
Sbjct: 239 AYASVFRSCAAITCLSTARQLHAHAIK-NKFSADRVVGTAIVDVYAKADSLVDARRAFFS 297
Query: 387 MPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFS 433
+P N + + M V L+ A+ + + + +S + D S
Sbjct: 298 LP--NHTVQACNAMMVGLVRTGLGAEALQLFQFMTRSGIGFDVVSLS 342
Score = 109 bits (273), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 69/309 (22%), Positives = 139/309 (44%), Gaps = 36/309 (11%)
Query: 44 FKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCV 103
F + N NA++ + + + + + M ++G + + +F +CA+
Sbjct: 295 FFSLPNHTVQACNAMMVGLVRTGLGAEALQLFQFMTRSGIGFDVVSLSGVFSACAEVKGY 354
Query: 104 ERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGH 163
+G H LA+K+G D ++ V N+++++YG
Sbjct: 355 LQGLQVHCLAIKSGFDVDVCVRNAILDLYG------------------------------ 384
Query: 164 VRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMA 223
+ + A+ +F M +R+ VSWN +I+ ++ ++ EM++ G +D T
Sbjct: 385 -KCKALVEAYLVFQEMEQRDSVSWNAIIAALEQNECYEDTIAYLNEMLRYGMEPDDFTYG 443
Query: 224 SVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADR 283
SVL AC G VHG +++ L + + + ++D+Y KC + AQ++ D + +
Sbjct: 444 SVLKACAGLQSLEYGSVVHGKAIKSGLGLDAFVSSTVVDMYCKCGMITEAQKLHDRIGGQ 503
Query: 284 NLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTE 343
LV WN++I G ++ + EE K F+ +++ + PD T+ V+ C +
Sbjct: 504 ELVSWNSIISGFSLNKQSEEAQKFFSEMLD-----IGVKPDHFTYATVLDTCANLATIEL 558
Query: 344 GRKYFRQMI 352
G++ Q+I
Sbjct: 559 GKQIHGQII 567
Score = 108 bits (269), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 90/408 (22%), Positives = 171/408 (41%), Gaps = 52/408 (12%)
Query: 30 HSADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYT 89
H+ D G+ +F + +P NA++ Y + V ++M + G P+ T
Sbjct: 82 HAGDTGA---AASLFGAMPDPDVVSWNALLSGYCQRGMFRDSVGLSVEMARRGVAPDRTT 138
Query: 90 FVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMS 149
L +C + G H +A+K G++ ++ ++L++MYG
Sbjct: 139 LAVLLKACGGLEDLALGVQIHAVAVKTGLEMDVRAGSALVDMYG---------------- 182
Query: 150 PRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFRE 209
+ + A F M ERN VSW I+G ++ L+LF +
Sbjct: 183 ---------------KCRSLEDALRFFHGMGERNSVSWGAAIAGCVQNEQYTRGLELFVQ 227
Query: 210 MMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQK 269
M + G + ASV +C + R +H + ++ + ++ TA++D+Y+K
Sbjct: 228 MQRLGLGVSQPAYASVFRSCAAITCLSTARQLHAHAIKNKFSADRVVGTAIVDVYAKADS 287
Query: 270 VEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFI 329
+ A+R F S+ + + NAM++G G E ++LF + I D ++
Sbjct: 288 LVDARRAFFSLPNHTVQACNAMMVGLVRTGLGAEALQLFQFMTR-----SGIGFDVVSLS 342
Query: 330 GVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMAN----LYAGAELTEEAEEILR 385
GV AC + +G + + IK F C+ N LY + EA + +
Sbjct: 343 GVFSACAEVKGYLQGLQ-----VHCLAIKSGFDVDVCVRNAILDLYGKCKALVEAYLVFQ 397
Query: 386 KMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFS 433
+M E D++S+ +I+ + C ++ +A + + + M+P DF+
Sbjct: 398 EM-EQRDSVSWNAIIAALEQNEC-YEDTIAYLNEMLR--YGMEPDDFT 441
Score = 88.6 bits (218), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 65/275 (23%), Positives = 120/275 (43%), Gaps = 36/275 (13%)
Query: 70 QGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLI 129
+G+ ++QM + G + + S+F SCA C+ H A+KN + V +++
Sbjct: 220 RGLELFVQMQRLGLGVSQPAYASVFRSCAAITCLSTARQLHAHAIKNKFSADRVVGTAIV 279
Query: 130 NMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNI 189
++Y ++ AR F + P V + N
Sbjct: 280 DVYAKADSLVDARRAFFSL-------------------------------PNHTVQACNA 308
Query: 190 MISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTS 249
M+ G ++G +L+LF+ M +SG + +++ V +AC + +G VH +++
Sbjct: 309 MMVGLVRTGLGAEALQLFQFMTRSGIGFDVVSLSGVFSACAEVKGYLQGLQVHCLAIKSG 368
Query: 250 LKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFT 309
++ + A++DLY KC+ + A VF M R+ V WNA+I + E +
Sbjct: 369 FDVDVCVRNAILDLYGKCKALVEAYLVFQEMEQRDSVSWNAIIAAL----EQNECYEDTI 424
Query: 310 ALVNGTVAGGSISPDEITFIGVICACVRAELLTEG 344
A +N + G + PD+ T+ V+ AC + L G
Sbjct: 425 AYLNEMLRYG-MEPDDFTYGSVLKACAGLQSLEYG 458
>gi|255563078|ref|XP_002522543.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223538234|gb|EEF39843.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 530
Score = 228 bits (582), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 150/480 (31%), Positives = 242/480 (50%), Gaps = 19/480 (3%)
Query: 6 QIQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSNS 65
+I AH++ +G F N+ +I LL G Y +F + N +I Y
Sbjct: 63 KIHAHIVKTG-FIPNTNVSIKLLILYLKCGCLKYARQMFDELPQRTLSAYNYLIGGYLKL 121
Query: 66 CVPDQGVVFYLQMIKNGFMPNSYTF-----VSLFGSCAKTGCVERGGMCHGLALKNGVDF 120
+ + +++ G P+ +T+ S G C G + HG LK+ V+
Sbjct: 122 GLVQDSMNLVRRLVLEGQRPDGFTYSMILKASTSGDNVTLSC-NLGSVVHGQILKSEVEP 180
Query: 121 ELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMP 180
+ + +L++ Y G + AR +F M +++I S++SG++ G + A E+F+
Sbjct: 181 DDVLYTALVDSYVKSGRVGYARKVFDMMMEKNVICSTSMISGYMNRGSVEDAEEIFERTV 240
Query: 181 ERNVVSWNIMISGYSKSGNPG-CSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGR 239
E++VV +N MI GYSKS +L+++ EM + GFR N T ASV+ AC A F G+
Sbjct: 241 EKDVVVFNAMIEGYSKSVQTAEKALEVYVEMQRYGFRPNLSTFASVIGACSVLAGFEIGQ 300
Query: 240 SVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHG 299
V G ++ N+ +ALID+YSKC ++E A+R F+ M ++N+ W++MI G+ +G
Sbjct: 301 QVQGQLLKREFFTNVKTGSALIDMYSKCGRIEDARRAFEQMPEKNVFSWSSMIDGYGKNG 360
Query: 300 KPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKP 359
+P+E ++LF + + I P+ +TF+G + AC A L+++GR+ F M Y +KP
Sbjct: 361 RPDEALQLFHKMQDCC-----IEPNYVTFLGALSACGHAGLVSKGREIFESMEREYSLKP 415
Query: 360 NFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVER 419
HY CM +L A A E + MPE S +W +LLS C G V M
Sbjct: 416 GMEHYACMVDLLGRAGSLNLAWEFVMGMPEKPS-----SDVWAALLSACNLHGNVEMASV 470
Query: 420 LAKSFVDMDPQDFS-RYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLKEVV 478
A ++ + S Y L N A AG+W+ V VRE+MK R + + G V + V+
Sbjct: 471 AANELFKLNAEGRSGAYVALSNTLAAAGKWDGVTEVREIMKSRGILKDTGSSWVGTESVL 530
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 57/265 (21%), Positives = 107/265 (40%), Gaps = 52/265 (19%)
Query: 215 FRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQ 274
FR ++S L S G+ +H + V+T PN + L+ LY KC ++ A+
Sbjct: 38 FRSTAAALSSALQDHINSNTPFHGQKIHAHIVKTGFIPNTNVSIKLLILYLKCGCLKYAR 97
Query: 275 RVFDSMADRNLVCWNAMILGHCIHGKPEEGIKL-------------FT------------ 309
++FD + R L +N +I G+ G ++ + L FT
Sbjct: 98 QMFDELPQRTLSAYNYLIGGYLKLGLVQDSMNLVRRLVLEGQRPDGFTYSMILKASTSGD 157
Query: 310 ---------ALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPN 360
++V+G + + PD++ + ++ + V++ + RK F M++ N
Sbjct: 158 NVTLSCNLGSVVHGQILKSEVEPDDVLYTALVDSYVKSGRVGYARKVFDMMME-----KN 212
Query: 361 FAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERL 420
M + Y E+AEEI + E D + F +++ + +V E+
Sbjct: 213 VICSTSMISGYMNRGSVEDAEEIFERTVE-KDVVVFNAMIE-------GYSKSVQTAEKA 264
Query: 421 AKSFVDMDPQDFSRYQFLLNVYAVA 445
+ +V+M RY F N+ A
Sbjct: 265 LEVYVEMQ-----RYGFRPNLSTFA 284
>gi|296089864|emb|CBI39683.3| unnamed protein product [Vitis vinifera]
Length = 585
Score = 228 bits (582), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 148/512 (28%), Positives = 247/512 (48%), Gaps = 47/512 (9%)
Query: 1 MKQLLQIQAHLITSGLFFNNSFWT--INLLKHSADFGSPDYTVLVFKCINNPGTFCVNAV 58
M++L +I AH++ +G N S +N S GS Y LVF I+NP T N++
Sbjct: 18 MRKLHKIHAHILINGYQHNPSISEKLLNFCAVSVS-GSLAYAQLVFHRIHNPQTPAWNSM 76
Query: 59 IKAYSNSCVPDQ--GVVFYLQMIKNGFM-PNSYTFVSLFGSCAKTGCVERGGMCHGLALK 115
I+ +S S P Q +VFY M+ P++YTF L +C + + HG ++
Sbjct: 77 IRGFSQSPSPLQLQAIVFYNHMLSASHARPDTYTFSFLLKACEEAKEEGKCREVHGFIIR 136
Query: 116 NGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHEL 175
G D ++ + +LI Y G ++ AH++
Sbjct: 137 FGYDQDVVLCTNLIRSYAGNGLIE-------------------------------TAHKV 165
Query: 176 FDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARF 235
F+ MP R++VSWN MIS Y ++G +LK++ +M S + T+ S+L++C
Sbjct: 166 FEEMPARDLVSWNSMISCYCQTGLHEEALKMYDQMRISNVGFDGFTLVSLLSSCAHVGAL 225
Query: 236 NEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGH 295
+ G +H + L NI + ALID+Y+KC + A +F+SM R++ WN+MI+G+
Sbjct: 226 HMGVQMHRFAGERRLVENIFVGNALIDMYAKCGSLASALSIFNSMPKRDVFTWNSMIVGY 285
Query: 296 CIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFY 355
+HG+ +E I F G++ + P+ ITF+G++C C L+ EG +YF M +
Sbjct: 286 GVHGRGDEAITFF-----GSMLMAGVRPNSITFLGLLCGCSHQGLVKEGVQYFHMMSSEF 340
Query: 356 KIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVA 415
+KP HY CM +L+ A +EA E++R P +D ++W +LL C+ V
Sbjct: 341 NLKPGIKHYGCMVDLFGRAGKLKEALEVIRSSPSQHD-----PVLWRTLLGSCKIHRNVE 395
Query: 416 MVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLK 475
+ E ++ V + L +YA A + VAR+R+L++ R + PG +++
Sbjct: 396 IGEMAMRNLVQLGSLGAGDCVLLSGIYAEAKDLQGVARMRKLIQSRGIKTTPGWSWIEVG 455
Query: 476 EVVEKLKVGHFWRGGMKEEVNKMMECRQSRSL 507
+ V + V +E K+ E SL
Sbjct: 456 DQVHRFVVDDKSHPDSREIYRKLEEVIHRASL 487
>gi|242076494|ref|XP_002448183.1| hypothetical protein SORBIDRAFT_06g022570 [Sorghum bicolor]
gi|241939366|gb|EES12511.1| hypothetical protein SORBIDRAFT_06g022570 [Sorghum bicolor]
Length = 549
Score = 228 bits (582), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 121/406 (29%), Positives = 214/406 (52%), Gaps = 41/406 (10%)
Query: 70 QGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLI 129
+ +V +M + GF P+S+T S+ A+ V+RG HG A++NG D ++ V +SLI
Sbjct: 154 EALVLVRKMWREGFRPDSFTLSSVLPIFAECADVKRGSEVHGFAVRNGFDNDVFVGSSLI 213
Query: 130 NMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNI 189
+MY +C R D S ++FD +P R+ + WN
Sbjct: 214 DMYA-----NCTRT------------------------DYSV--KVFDNLPVRDPILWNS 242
Query: 190 MISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTS 249
+++G +++G+ +L +FR M+++G R T +S++ CG A G+ +H Y +R
Sbjct: 243 VLAGCAQNGSVEEALGIFRRMLQTGVRPVPVTFSSLIPVCGNLASLRFGKQLHAYVIRGG 302
Query: 250 LKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFT 309
+ N+ + ++LID+Y KC ++ +A +FD M ++V W AMI+G+ +HG E + LF
Sbjct: 303 FEDNVFISSSLIDMYCKCGEISIAHHIFDRMCSPDVVSWTAMIMGYALHGPAREALVLFE 362
Query: 310 ALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMAN 369
+ G+ P+ ITF+ V+ AC A L+ +G KYF+ M D Y I P H +A+
Sbjct: 363 RM-----ELGNAKPNHITFLAVLTACSHAGLVDKGWKYFKSMSDHYGIVPTLEHCAALAD 417
Query: 370 LYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDP 429
+ A +EA + KM + + +W +LL CR + E +AK ++++P
Sbjct: 418 ILGRAGELDEAYNFISKM-----QIKPTASVWSTLLRACRVHKNTMLAEEVAKKIMELEP 472
Query: 430 QDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLK 475
+ + L N+Y+ +G+W + A +R+ M+K+ M + P C +++K
Sbjct: 473 RSIGSHVVLSNMYSASGRWNEAAHLRKSMRKKGMKKDPACSWIEVK 518
Score = 115 bits (289), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 79/286 (27%), Positives = 138/286 (48%), Gaps = 21/286 (7%)
Query: 70 QGVVFYLQMIKNGFMPNSYTFVSL---FGSCAKTGCVERGGMCHGLALKNGVDFELPVMN 126
+ +L+M + P S SL SCA G G H LA+++G + N
Sbjct: 32 DAISLFLRM-RACAAPRSSVPASLPAALKSCAALGLSALGASLHALAIRSGAFADRFTAN 90
Query: 127 SLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVS 186
+L+N+Y C + C+ ++ V G S + + ++FD M ER+VVS
Sbjct: 91 ALLNLY-C--KLPCSYLHSTGVTS---------VGGTGSSTALESVRKVFDEMIERDVVS 138
Query: 187 WNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTV 246
WN ++ G ++ G +L L R+M + GFR + T++SVL A G VHG+ V
Sbjct: 139 WNTLVLGCAEEGRHHEALVLVRKMWREGFRPDSFTLSSVLPIFAECADVKRGSEVHGFAV 198
Query: 247 RTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIK 306
R ++ + ++LID+Y+ C + + + +VFD++ R+ + WN+++ G +G EE +
Sbjct: 199 RNGFDNDVFVGSSLIDMYANCTRTDYSVKVFDNLPVRDPILWNSVLAGCAQNGSVEEALG 258
Query: 307 LFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMI 352
+F ++ V P +TF +I C L G++ +I
Sbjct: 259 IFRRMLQTGV-----RPVPVTFSSLIPVCGNLASLRFGKQLHAYVI 299
Score = 70.1 bits (170), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 55/250 (22%), Positives = 112/250 (44%), Gaps = 8/250 (3%)
Query: 17 FFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYL 76
F N+ F +L+ A+ DY+V VF + N+V+ + + ++ + +
Sbjct: 202 FDNDVFVGSSLIDMYANCTRTDYSVKVFDNLPVRDPILWNSVLAGCAQNGSVEEALGIFR 261
Query: 77 QMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFG 136
+M++ G P TF SL C + G H ++ G + + + +SLI+MY G
Sbjct: 262 RMLQTGVRPVPVTFSSLIPVCGNLASLRFGKQLHAYVIRGGFEDNVFISSSLIDMYCKCG 321
Query: 137 AMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIM----PERNVVSWNIMIS 192
+ A ++F +M D++SW +++ G+ G A LF+ M + N +++ +++
Sbjct: 322 EISIAHHIFDRMCSPDVVSWTAMIMGYALHGPAREALVLFERMELGNAKPNHITFLAVLT 381
Query: 193 GYSKSGNPGCSLKLFREMMKS-GFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLK 251
S +G K F+ M G + A++ GR+ +E + + + +K
Sbjct: 382 ACSHAGLVDKGWKYFKSMSDHYGIVPTLEHCAALADILGRAGELDEA---YNFISKMQIK 438
Query: 252 PNIILDTALI 261
P + + L+
Sbjct: 439 PTASVWSTLL 448
Score = 48.1 bits (113), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 63/323 (19%), Positives = 122/323 (37%), Gaps = 59/323 (18%)
Query: 169 MSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGND--KTMASVL 226
MS + ++ P +SW I + G+ ++ LF M + ++ + L
Sbjct: 1 MSVSEAVYTPWPPP--LSWAHQIRMAAAQGHFRDAISLFLRMRACAAPRSSVPASLPAAL 58
Query: 227 TACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSK-------------------C 267
+C G S+H +R+ + AL++LY K
Sbjct: 59 KSCAALGLSALGASLHALAIRSGAFADRFTANALLNLYCKLPCSYLHSTGVTSVGGTGSS 118
Query: 268 QKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEIT 327
+E ++VFD M +R++V WN ++LG G+ E + L + PD T
Sbjct: 119 TALESVRKVFDEMIERDVVSWNTLVLGCAEEGRHHEALVLVRKMWR-----EGFRPDSFT 173
Query: 328 FIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYW----CMANLYAGAELTEEAEEI 383
V+ + G + + + ++ F + + ++YA T+ + ++
Sbjct: 174 LSSVLPIFAECADVKRGSE-----VHGFAVRNGFDNDVFVGSSLIDMYANCTRTDYSVKV 228
Query: 384 LRKMPEDNDNMSFESIMWVSLLSLCRFQG----AVAMVERLAKSFVDMDPQDFS------ 433
+P + I+W S+L+ C G A+ + R+ ++ V P FS
Sbjct: 229 FDNLPVR------DPILWNSVLAGCAQNGSVEEALGIFRRMLQTGVRPVPVTFSSLIPVC 282
Query: 434 ------RYQFLLNVYAVAGQWED 450
R+ L+ Y + G +ED
Sbjct: 283 GNLASLRFGKQLHAYVIRGGFED 305
>gi|347954510|gb|AEP33755.1| chloroplast biogenesis 19, partial [Olimarabidopsis pumila]
Length = 475
Score = 228 bits (582), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 130/407 (31%), Positives = 209/407 (51%), Gaps = 14/407 (3%)
Query: 82 GFMPNSYTFVSLFGSCAK--TGCVERGGMCHGLALKNGVDF-ELPVMNSLINMYGCFGAM 138
G P TF++L C +G G + HG A K G+D + V +++ MY G +
Sbjct: 41 GVEPTHITFIALLSGCGDFPSGSETLGDLLHGYACKLGLDRNHVMVGTAILGMYSKRGRV 100
Query: 139 DCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSG 198
AR +F M ++ ++WN+++ G++RSG + A +LFD MPE +++SW M++G+ K G
Sbjct: 101 KKARLVFDYMDDKNSVTWNTMIDGYMRSGQVHNAVKLFDKMPEPDLISWTAMVNGFVKKG 160
Query: 199 NPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDT 258
+L FREM SG + + + + L AC + G VH Y + K N+ +
Sbjct: 161 FHEEALVWFREMQISGVKPDYVAIIAALNACTNLGALSLGLWVHRYVMSQDFKNNVRVSN 220
Query: 259 ALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAG 318
+LIDLY +C VE A+ VFD M R +V WN++I+G +G E + F +
Sbjct: 221 SLIDLYCRCGCVEFAREVFDKMEKRTVVSWNSVIVGFAANGNAHESLVYFRKMQE----- 275
Query: 319 GSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTE 378
P+ +TF G + AC L+ EG ++F+ M Y I P HY C+ +LY+ A E
Sbjct: 276 EGFKPNAVTFTGALTACSHVGLVDEGLRFFQSMKRDYNISPRIEHYGCLVDLYSRAGRLE 335
Query: 379 EAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQG-AVAMVERLAKSFVDMDPQDFSRYQF 437
+A ++++ MP M ++ SLL+ CR G + ERL K D++ + S Y
Sbjct: 336 DALKVVQSMP-----MKPNEVVIGSLLAACRNHGNNTVLAERLMKHLSDLNVKSHSNYVI 390
Query: 438 LLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLKEVVEKLKVG 484
L N+YA +WE +R+R MK + + PG +++ + G
Sbjct: 391 LSNMYAADAKWEGASRMRRKMKGLGLKKQPGFSSIEIDDCTHVFMAG 437
Score = 86.7 bits (213), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 61/247 (24%), Positives = 103/247 (41%), Gaps = 32/247 (12%)
Query: 35 GSPDYTVLVFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLF 94
G V +F + P A++ + ++ +V++ +M +G P+ ++
Sbjct: 129 GQVHNAVKLFDKMPEPDLISWTAMVNGFVKKGFHEEALVWFREMQISGVKPDYVAIIAAL 188
Query: 95 GSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLI 154
+C G + G H + + V NSLI++Y G ++ AR +F +M R ++
Sbjct: 189 NACTNLGALSLGLWVHRYVMSQDFKNNVRVSNSLIDLYCRCGCVEFAREVFDKMEKRTVV 248
Query: 155 SWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSG 214
SWNS+ I G++ +GN SL FR+M + G
Sbjct: 249 SWNSV-------------------------------IVGFAANGNAHESLVYFRKMQEEG 277
Query: 215 FRGNDKTMASVLTACGRSARFNEG-RSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVA 273
F+ N T LTAC +EG R ++ P I L+DLYS+ ++E A
Sbjct: 278 FKPNAVTFTGALTACSHVGLVDEGLRFFQSMKRDYNISPRIEHYGCLVDLYSRAGRLEDA 337
Query: 274 QRVFDSM 280
+V SM
Sbjct: 338 LKVVQSM 344
Score = 38.9 bits (89), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 23/95 (24%), Positives = 44/95 (46%)
Query: 12 ITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSNSCVPDQG 71
+ S F NN + +L+ G ++ VF + N+VI ++ + +
Sbjct: 207 VMSQDFKNNVRVSNSLIDLYCRCGCVEFAREVFDKMEKRTVVSWNSVIVGFAANGNAHES 266
Query: 72 VVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERG 106
+V++ +M + GF PN+ TF +C+ G V+ G
Sbjct: 267 LVYFRKMQEEGFKPNAVTFTGALTACSHVGLVDEG 301
>gi|449446195|ref|XP_004140857.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Cucumis sativus]
Length = 593
Score = 228 bits (582), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 114/345 (33%), Positives = 201/345 (58%), Gaps = 10/345 (2%)
Query: 115 KNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHE 174
++GV +L + N+LI+MYG G +D A +F QM ++++SWN+++ G+ + G++ AA +
Sbjct: 242 EHGVVVDLYLGNTLIDMYGRRGMIDFAGRVFYQMKEKNIVSWNAMIMGYAKVGNLVAAKK 301
Query: 175 LFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSAR 234
LF+ MP R+V+SW MI GYS + ++KLF+EMM S + ++ T+A+ L+AC
Sbjct: 302 LFNEMPSRDVISWTSMIIGYSLAKQHAEAVKLFQEMMVSMVKPDEITVATALSACAHLGS 361
Query: 235 FNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILG 294
+ G +VH Y + +K ++ + +LID+Y KC VE A +VF+ M R+ V W ++I G
Sbjct: 362 LDAGEAVHDYIRKHDIKSDVFVGNSLIDMYCKCGVVEKALQVFNDMKTRDSVSWTSIISG 421
Query: 295 HCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDF 354
++G E + +F ++ I P TF+GV+ AC L+ +G ++F+ M +
Sbjct: 422 LAVNGFAESALNVFDQMLK-----EGICPTHGTFVGVLLACAHVGLVDKGVEHFKSMENT 476
Query: 355 YKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAV 414
Y++ P HY C+ +L + + A ++KMP D ++W LLS C+ G +
Sbjct: 477 YRLAPEMKHYGCVVDLLCRSGYLDMAYNFIKKMPIVPD-----VVIWRILLSACKLHGNL 531
Query: 415 AMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMK 459
+ E ++K + +DP + Y + YA + +W+DV ++R+LM+
Sbjct: 532 VLAEIVSKKLLVLDPSNNGNYVLSSSTYAGSDRWDDVIKIRKLME 576
Score = 134 bits (336), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 106/394 (26%), Positives = 164/394 (41%), Gaps = 70/394 (17%)
Query: 42 LVFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTG 101
VF I P N +I S S P+ + FY M G + TF+ LF SCA+
Sbjct: 68 FVFNQIQRPTLLVWNHMIHGLSKSDRPNDAIHFYNTMYYKGIQGSHLTFIFLFKSCARVS 127
Query: 102 CVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVS 161
V +G M ++K G + L V N+LI+MY CFG
Sbjct: 128 DVRQGQMVRVHSMKLGFESYLFVSNALIHMYVCFG------------------------- 162
Query: 162 GHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKT 221
+++ A ++FD M ER+VVSWN +I GY + L LFREM R + T
Sbjct: 163 ------ELAMAQKVFDGMLERDVVSWNSIICGYYQFNRFKKVLDLFREMQAINVRADSVT 216
Query: 222 MASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMA 281
M ++A + + G + Y + ++ L LID+Y + ++ A RVF M
Sbjct: 217 MMKAISATCFLSEWEMGDYLVKYIDEHGVVVDLYLGNTLIDMYGRRGMIDFAGRVFYQMK 276
Query: 282 DRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGS--------------------- 320
++N+V WNAMI+G+ G KLF + + V +
Sbjct: 277 EKNIVSWNAMIMGYAKVGNLVAAKKLFNEMPSRDVISWTSMIIGYSLAKQHAEAVKLFQE 336
Query: 321 -----ISPDEITFIGVICACVRAELLTEG---RKYFRQMIDFYKIKPNFAHYWCMANLYA 372
+ PDEIT + AC L G Y R+ + IK + + ++Y
Sbjct: 337 MMVSMVKPDEITVATALSACAHLGSLDAGEAVHDYIRK----HDIKSDVFVGNSLIDMYC 392
Query: 373 GAELTEEAEEILRKMPEDNDNMSFESIMWVSLLS 406
+ E+A ++ ND + +S+ W S++S
Sbjct: 393 KCGVVEKALQVF------NDMKTRDSVSWTSIIS 420
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 66/292 (22%), Positives = 137/292 (46%), Gaps = 18/292 (6%)
Query: 169 MSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTA 228
+ AH +F+ + ++ WN MI G SKS P ++ + M G +G+ T + +
Sbjct: 63 LPKAHFVFNQIQRPTLLVWNHMIHGLSKSDRPNDAIHFYNTMYYKGIQGSHLTFIFLFKS 122
Query: 229 CGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCW 288
C R + +G+ V ++++ + + + ALI +Y ++ +AQ+VFD M +R++V W
Sbjct: 123 CARVSDVRQGQMVRVHSMKLGFESYLFVSNALIHMYVCFGELAMAQKVFDGMLERDVVSW 182
Query: 289 NAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICA-CVRAELLTEGRKY 347
N++I G+ + ++ + LF + ++ D +T + I A C +E E Y
Sbjct: 183 NSIICGYYQFNRFKKVLDLFREM-----QAINVRADSVTMMKAISATCFLSEW--EMGDY 235
Query: 348 FRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSL 407
+ ID + + + + ++Y + + A + +M E N + W +++
Sbjct: 236 LVKYIDEHGVVVDLYLGNTLIDMYGRRGMIDFAGRVFYQMKEKN------IVSWNAMIMG 289
Query: 408 CRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQW-EDVARVRELM 458
G + ++L F +M +D + ++ Y++A Q E V +E+M
Sbjct: 290 YAKVGNLVAAKKL---FNEMPSRDVISWTSMIIGYSLAKQHAEAVKLFQEMM 338
Score = 65.5 bits (158), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 56/247 (22%), Positives = 106/247 (42%), Gaps = 35/247 (14%)
Query: 56 NAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALK 115
++I YS + + V + +M+ + P+ T + +CA G ++ G H K
Sbjct: 315 TSMIIGYSLAKQHAEAVKLFQEMMVSMVKPDEITVATALSACAHLGSLDAGEAVHDYIRK 374
Query: 116 NGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHEL 175
+ + ++ V NSLI+MY G ++ A +F M RD +SW SI+SG
Sbjct: 375 HDIKSDVFVGNSLIDMYCKCGVVEKALQVFNDMKTRDSVSWTSIISG------------- 421
Query: 176 FDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARF 235
+ ++G+++S +L +F +M+K G T VL AC
Sbjct: 422 -------------LAVNGFAES-----ALNVFDQMLKEGICPTHGTFVGVLLACAHVGLV 463
Query: 236 NEGRSVHGYTVRTS--LKPNIILDTALIDLYSKCQKVEVAQRVFDSMAD-RNLVCWNAMI 292
++G H ++ + L P + ++DL + +++A M ++V W ++
Sbjct: 464 DKGVE-HFKSMENTYRLAPEMKHYGCVVDLLCRSGYLDMAYNFIKKMPIVPDVVIWRILL 522
Query: 293 LGHCIHG 299
+HG
Sbjct: 523 SACKLHG 529
Score = 44.3 bits (103), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 33/143 (23%), Positives = 59/143 (41%), Gaps = 11/143 (7%)
Query: 228 ACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYS-KCQKVEVAQRVFDSMADRNLV 286
A S N + +H VR + + + +I Y+ Q + A VF+ + L+
Sbjct: 20 AISNSTSLNSIKELHAQLVRAQMHIDPSSISEVIKHYALSPQSLPKAHFVFNQIQRPTLL 79
Query: 287 CWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRK 346
WN MI G +P + I + + + G +TFI + +C R + +G
Sbjct: 80 VWNHMIHGLSKSDRPNDAIHFYNTMYYKGIQGS-----HLTFIFLFKSCARVSDVRQG-- 132
Query: 347 YFRQMIDFYKIKPNFAHYWCMAN 369
QM+ + +K F Y ++N
Sbjct: 133 ---QMVRVHSMKLGFESYLFVSN 152
Score = 41.6 bits (96), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 46/194 (23%), Positives = 75/194 (38%), Gaps = 36/194 (18%)
Query: 7 IQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSNSC 66
I+ H I S +F NS L+ G + + VF + + ++I + +
Sbjct: 372 IRKHDIKSDVFVGNS-----LIDMYCKCGVVEKALQVFNDMKTRDSVSWTSIISGLAVNG 426
Query: 67 VPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMN 126
+ + + QM+K G P TFV + +CA G V++ G+ H +++N P M
Sbjct: 427 FAESALNVFDQMLKEGICPTHGTFVGVLLACAHVGLVDK-GVEHFKSMENTYRLA-PEMK 484
Query: 127 SLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMP-ERNVV 185
YGC + C RSG + A+ MP +VV
Sbjct: 485 H----YGCVVDLLC------------------------RSGYLDMAYNFIKKMPIVPDVV 516
Query: 186 SWNIMISGYSKSGN 199
W I++S GN
Sbjct: 517 IWRILLSACKLHGN 530
>gi|413944960|gb|AFW77609.1| hypothetical protein ZEAMMB73_798524 [Zea mays]
Length = 665
Score = 228 bits (582), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 141/457 (30%), Positives = 227/457 (49%), Gaps = 18/457 (3%)
Query: 50 PGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVS-LFGSCAKTGCVERGGM 108
P N ++ + S VV M G + T VS + G V G
Sbjct: 119 PNVITWNGLVSGLNRSGRARDAVVALATMHGEGLLRPDATGVSCALSAVGDVGLVSVGQQ 178
Query: 109 CHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGD 168
HG A+K G + V+ +LI+MYG G +F + S D+ S N++++G R+
Sbjct: 179 LHGYAVKAGCRADACVVTALIDMYGKCGQAAEVVRVFDESSHMDVASCNALIAGLSRNAQ 238
Query: 169 MSAAHELF----DIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMAS 224
+ A LF D E NVVSW +++ ++G +++ FREM G N T+
Sbjct: 239 VCEALRLFKEFVDRGVELNVVSWTSIVACCVQNGKDLEAVEFFREMQAQGTEPNSVTIPC 298
Query: 225 VLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRN 284
VL A A GRS H + +R ++ + +AL+D+Y+KC +V+ A+ +FD+M RN
Sbjct: 299 VLPAFANVAALMHGRSAHCFALRKGFLHDVYVSSALVDMYAKCGRVKDARIIFDTMVSRN 358
Query: 285 LVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEG 344
+V WNAMI G+ ++G+ + +F +++ PD +TF ++ AC +A L EG
Sbjct: 359 VVSWNAMIGGYAMYGEAVNAVWMFHSMLKCKQ-----KPDMVTFTCLLAACTQAGLTEEG 413
Query: 345 RKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSL 404
R YF++M + Y + P HY CM L A +EA +++ MP + D + +W SL
Sbjct: 414 RHYFKEMHNEYGVSPRMEHYACMVTLLGRAGKLDEAYDLISDMPFEPD-----AYIWGSL 468
Query: 405 LSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMG 464
L CR G V + E A+ ++P++ Y L N+YA W+ V RVRE+MK +
Sbjct: 469 LGSCRVHGNVDLAEVAAEKLFHLEPENAGNYVLLSNIYASKKMWDRVNRVREMMKDVGLK 528
Query: 465 RMPGCRLVDLKEVVEKLKVG---HFWRGGMKEEVNKM 498
+ GC +++K V L G H + E++N++
Sbjct: 529 KEKGCSWIEIKNKVHMLLAGDDSHPMMTAIIEKINQL 565
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 59/261 (22%), Positives = 111/261 (42%), Gaps = 45/261 (17%)
Query: 151 RDLISWNSIVSGHVRSGDMSAAHELFDIMP--ERNVVSWNIMISGYSKSGNPGCSLKLFR 208
RD +S++ ++R G A LFD MP +R VV W+ +++ ++ G+ + +L
Sbjct: 50 RDPFVASSLLHAYLRLGTTGNARALFDGMPRPQRTVVGWSALVAAHAARGDAEGAWRLLE 109
Query: 209 EMMKSG-------------------------------------FRGNDKTMASVLTACGR 231
EM + G R + ++ L+A G
Sbjct: 110 EMRRDGGVEPNVITWNGLVSGLNRSGRARDAVVALATMHGEGLLRPDATGVSCALSAVGD 169
Query: 232 SARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAM 291
+ G+ +HGY V+ + + + TALID+Y KC + RVFD + ++ NA+
Sbjct: 170 VGLVSVGQQLHGYAVKAGCRADACVVTALIDMYGKCGQAAEVVRVFDESSHMDVASCNAL 229
Query: 292 ILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQM 351
I G + + E ++LF V+ + + +++ ++ CV+ E ++FR+M
Sbjct: 230 IAGLSRNAQVCEALRLFKEFVD-----RGVELNVVSWTSIVACCVQNGKDLEAVEFFREM 284
Query: 352 IDFYKIKPNFAHYWCMANLYA 372
+PN C+ +A
Sbjct: 285 -QAQGTEPNSVTIPCVLPAFA 304
>gi|449519454|ref|XP_004166750.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At2g22410, mitochondrial-like [Cucumis sativus]
Length = 552
Score = 228 bits (582), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 114/345 (33%), Positives = 201/345 (58%), Gaps = 10/345 (2%)
Query: 115 KNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHE 174
++GV +L + N+LI+MYG G +D A +F QM ++++SWN+++ G+ + G++ AA +
Sbjct: 201 EHGVVVDLYLGNTLIDMYGRRGMIDFAGRVFYQMKEKNIVSWNAMIMGYAKVGNLVAAKK 260
Query: 175 LFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSAR 234
LF+ MP R+V+SW MI GYS + ++KLF+EMM S + ++ T+A+ L+AC
Sbjct: 261 LFNEMPSRDVISWTSMIIGYSLAKQHAEAVKLFQEMMVSMVKPDEITVATALSACAHLGS 320
Query: 235 FNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILG 294
+ G +VH Y + +K ++ + +LID+Y KC VE A +VF+ M R+ V W ++I G
Sbjct: 321 LDAGEAVHDYIRKHDIKSDVFVGNSLIDMYCKCGVVEKALQVFNDMKTRDSVSWTSIISG 380
Query: 295 HCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDF 354
++G E + +F ++ I P TF+GV+ AC L+ +G ++F+ M +
Sbjct: 381 LAVNGFAESALNVFDQMLK-----EGICPTHGTFVGVLLACAHVGLVDKGVEHFKSMENT 435
Query: 355 YKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAV 414
Y++ P HY C+ +L + + A ++KMP D ++W LLS C+ G +
Sbjct: 436 YRLAPEMKHYGCVVDLLCRSGYLDMAYNFIKKMPIVPD-----VVIWRILLSACKLHGNL 490
Query: 415 AMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMK 459
+ E ++K + +DP + Y + YA + +W+DV ++R+LM+
Sbjct: 491 VLAEIVSKKLLVLDPSNNGNYVLSSSTYAGSDRWDDVIKIRKLME 535
Score = 131 bits (329), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 105/394 (26%), Positives = 163/394 (41%), Gaps = 70/394 (17%)
Query: 42 LVFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTG 101
VF I P N +I S S P+ + FY M G + TF+ LF SCA+
Sbjct: 27 FVFNQIQRPTLLVWNHMIHGLSKSDRPNDAIHFYNTMYYKGIQGSHLTFIFLFKSCARVS 86
Query: 102 CVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVS 161
V +G M ++K G + V N+LI+MY CFG
Sbjct: 87 DVRQGQMVRVHSMKLGFESXSFVSNALIHMYVCFG------------------------- 121
Query: 162 GHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKT 221
+++ A ++FD M ER+VVSWN +I GY + L LFREM R + T
Sbjct: 122 ------ELAMAQKVFDGMLERDVVSWNSIICGYYQFNRFKKVLDLFREMQAINVRADSVT 175
Query: 222 MASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMA 281
M ++A + + G + Y + ++ L LID+Y + ++ A RVF M
Sbjct: 176 MMKAISATCFLSEWEMGDYLVKYIDEHGVVVDLYLGNTLIDMYGRRGMIDFAGRVFYQMK 235
Query: 282 DRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGS--------------------- 320
++N+V WNAMI+G+ G KLF + + V +
Sbjct: 236 EKNIVSWNAMIMGYAKVGNLVAAKKLFNEMPSRDVISWTSMIIGYSLAKQHAEAVKLFQE 295
Query: 321 -----ISPDEITFIGVICACVRAELLTEG---RKYFRQMIDFYKIKPNFAHYWCMANLYA 372
+ PDEIT + AC L G Y R+ + IK + + ++Y
Sbjct: 296 MMVSMVKPDEITVATALSACAHLGSLDAGEAVHDYIRK----HDIKSDVFVGNSLIDMYC 351
Query: 373 GAELTEEAEEILRKMPEDNDNMSFESIMWVSLLS 406
+ E+A ++ ND + +S+ W S++S
Sbjct: 352 KCGVVEKALQVF------NDMKTRDSVSWTSIIS 379
Score = 82.8 bits (203), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 64/292 (21%), Positives = 137/292 (46%), Gaps = 18/292 (6%)
Query: 169 MSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTA 228
+ AH +F+ + ++ WN MI G SKS P ++ + M G +G+ T + +
Sbjct: 22 LPKAHFVFNQIQRPTLLVWNHMIHGLSKSDRPNDAIHFYNTMYYKGIQGSHLTFIFLFKS 81
Query: 229 CGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCW 288
C R + +G+ V ++++ + + ALI +Y ++ +AQ+VFD M +R++V W
Sbjct: 82 CARVSDVRQGQMVRVHSMKLGFESXSFVSNALIHMYVCFGELAMAQKVFDGMLERDVVSW 141
Query: 289 NAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICA-CVRAELLTEGRKY 347
N++I G+ + ++ + LF + ++ D +T + I A C +E E Y
Sbjct: 142 NSIICGYYQFNRFKKVLDLFREM-----QAINVRADSVTMMKAISATCFLSEW--EMGDY 194
Query: 348 FRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSL 407
+ ID + + + + ++Y + + A + +M E N + W +++
Sbjct: 195 LVKYIDEHGVVVDLYLGNTLIDMYGRRGMIDFAGRVFYQMKEKN------IVSWNAMIMG 248
Query: 408 CRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARV-RELM 458
G + ++L F +M +D + ++ Y++A Q + ++ +E+M
Sbjct: 249 YAKVGNLVAAKKL---FNEMPSRDVISWTSMIIGYSLAKQHAEAVKLFQEMM 297
Score = 65.5 bits (158), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 56/247 (22%), Positives = 106/247 (42%), Gaps = 35/247 (14%)
Query: 56 NAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALK 115
++I YS + + V + +M+ + P+ T + +CA G ++ G H K
Sbjct: 274 TSMIIGYSLAKQHAEAVKLFQEMMVSMVKPDEITVATALSACAHLGSLDAGEAVHDYIRK 333
Query: 116 NGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHEL 175
+ + ++ V NSLI+MY G ++ A +F M RD +SW SI+SG
Sbjct: 334 HDIKSDVFVGNSLIDMYCKCGVVEKALQVFNDMKTRDSVSWTSIISG------------- 380
Query: 176 FDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARF 235
+ ++G+++S +L +F +M+K G T VL AC
Sbjct: 381 -------------LAVNGFAES-----ALNVFDQMLKEGICPTHGTFVGVLLACAHVGLV 422
Query: 236 NEGRSVHGYTVRTS--LKPNIILDTALIDLYSKCQKVEVAQRVFDSMAD-RNLVCWNAMI 292
++G H ++ + L P + ++DL + +++A M ++V W ++
Sbjct: 423 DKGVE-HFKSMENTYRLAPEMKHYGCVVDLLCRSGYLDMAYNFIKKMPIVPDVVIWRILL 481
Query: 293 LGHCIHG 299
+HG
Sbjct: 482 SACKLHG 488
Score = 41.6 bits (96), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 46/194 (23%), Positives = 75/194 (38%), Gaps = 36/194 (18%)
Query: 7 IQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSNSC 66
I+ H I S +F NS L+ G + + VF + + ++I + +
Sbjct: 331 IRKHDIKSDVFVGNS-----LIDMYCKCGVVEKALQVFNDMKTRDSVSWTSIISGLAVNG 385
Query: 67 VPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMN 126
+ + + QM+K G P TFV + +CA G V++ G+ H +++N P M
Sbjct: 386 FAESALNVFDQMLKEGICPTHGTFVGVLLACAHVGLVDK-GVEHFKSMENTYRLA-PEMK 443
Query: 127 SLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMP-ERNVV 185
YGC + C RSG + A+ MP +VV
Sbjct: 444 H----YGCVVDLLC------------------------RSGYLDMAYNFIKKMPIVPDVV 475
Query: 186 SWNIMISGYSKSGN 199
W I++S GN
Sbjct: 476 IWRILLSACKLHGN 489
>gi|147833409|emb|CAN68525.1| hypothetical protein VITISV_018083 [Vitis vinifera]
Length = 1796
Score = 228 bits (582), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 139/493 (28%), Positives = 241/493 (48%), Gaps = 46/493 (9%)
Query: 6 QIQAHLITSGLFFNNSFWT--INLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAY- 62
QI A ++ + F++ + +NL D S ++ V + P F ++A+I Y
Sbjct: 194 QIHARIVVDEVEFDSVLGSSLVNLYGKCGDIDSANH---VLNLMKEPDAFSLSALISGYA 250
Query: 63 ---------------SNSCV---------------PDQGVVFYLQMIKNGFMPNSYTFVS 92
SN CV + + + M + G + TF S
Sbjct: 251 SCGRMNDARRIFCLKSNXCVVLWNSMISGYVANNEALEALELFNNMRRKGVQEDYSTFAS 310
Query: 93 LFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRD 152
+ +C+ G +++G H K G ++ + ++L++MY D A +F + D
Sbjct: 311 VLSACSTLGIIDQGIQVHAHVYKVGFTNDIIIDSALVDMYSKCRRPDDACKLFSDLQAYD 370
Query: 153 LISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMK 212
I NS+++ + G + A ++FD MP ++++SWN MI G+S++ P +L LF EM K
Sbjct: 371 TILLNSMITVYSNCGRIDDARQIFDTMPSKSLISWNSMIVGFSQNACPIEALDLFCEMNK 430
Query: 213 SGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEV 272
G R + ++A V++AC + G + L+ + I+ T+L+D Y KC VE
Sbjct: 431 LGLRMDKFSLAGVISACASISSLELGEQIFARATIIGLEFDQIISTSLVDFYCKCGLVEH 490
Query: 273 AQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVI 332
+++FD M + V WN+M++G+ +G E + +F + + P +ITF+GV+
Sbjct: 491 GRKLFDRMMKSDEVPWNSMLMGYATNGHGIEALNVFDQM-----RSVGVQPTDITFVGVL 545
Query: 333 CACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDND 392
AC L+ EGRK+F M Y I P HY CM +LYA A L E+A ++ +MP
Sbjct: 546 SACDHCGLVEEGRKWFYAMKLDYHINPGIEHYSCMVDLYARAGLLEDAMNLIEQMP---- 601
Query: 393 NMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVA 452
+ ++ MW S+L C G + +++AK +D+DP++ Y L +YA W A
Sbjct: 602 -LKADTSMWSSVLRGCVAHGNNILGKKVAKRIIDLDPENSGAYVQLSGIYATFEDWGRSA 660
Query: 453 RVRELMKKRRMGR 465
+VR+LM +++ +
Sbjct: 661 QVRKLMYDKKIPK 673
Score = 174 bits (441), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 126/529 (23%), Positives = 236/529 (44%), Gaps = 55/529 (10%)
Query: 6 QIQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSNS 65
QI A +I +G+ +N +L+ FG DY VF + N++I + S
Sbjct: 860 QIHASMIRNGVDLSNVVVGNSLIGMYGKFGVVDYAFGVFITMEELDIISWNSLIWSCGKS 919
Query: 66 CVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVM 125
+ + ++ M G+ P+ +T ++ C+ +E+G L ++ G V
Sbjct: 920 GYQNLALRQFVLMRSVGYSPDQFTVSTVITVCSNLQDLEKGEQIFALCIRVGFLSNSIVS 979
Query: 126 NSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVV 185
++ I+++ ++ + +F ++ W+S++
Sbjct: 980 SASIDLFSKCNRLEDSVRVF-----EEIYQWDSVLC------------------------ 1010
Query: 186 SWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYT 245
N MIS Y+ G +L+LF ++ R + T++ VL+A ++G +H
Sbjct: 1011 --NAMISSYAWHGFGENALQLFVLTLRENLRPTEFTLSIVLSAVSILLPVDQGSQIHSLV 1068
Query: 246 VRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGI 305
V++ L+ ++I+ ++L+++Y+K ++ A + F + R+L+ WN MI+G +G+ + +
Sbjct: 1069 VKSGLESDVIVASSLVEMYAKFGLIDSAMKTFAKIGARDLISWNTMIMGLAYNGRVSKAL 1128
Query: 306 KLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYW 365
++F L+ G PDEIT GV+ AC L+ EG F M Y + P HY
Sbjct: 1129 EIFKELLI-----GGPPPDEITLAGVLLACNVGGLVDEGLSIFSSMEKEYGVIPAIEHYA 1183
Query: 366 CMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFV 425
C+ ++ + +EA +I+ MP + + +W SLL C G + ER+A+ +
Sbjct: 1184 CIVDMMSRGGKLKEAMDIVELMPHEPSGL-----IWGSLLCACEIYGDLRFTERVAERVM 1238
Query: 426 DMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLKEVVEKLKVGH 485
+++PQ Y L Y + G+WE + RV MK++ + ++ GC + +K V K
Sbjct: 1239 ELEPQSSLPYLVLAQAYEMRGRWESLVRVXRAMKEKGVRKVIGCSWIGIKNHVFVFKENQ 1298
Query: 486 FWRGGMK----------EEVNKMMECRQS----RSLATVSKQLPWHKNE 520
G K +E+ Q R++ V L W KNE
Sbjct: 1299 LLHIGGKDIYFILRLLIQEIEDDGYASQQYDKVRAVGEVGTVLLWVKNE 1347
Score = 145 bits (366), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 98/388 (25%), Positives = 180/388 (46%), Gaps = 54/388 (13%)
Query: 56 NAVIKAYSNSCVPDQGVVFYLQMIKNG---FMPNSYTFVSLFGSCAKTGCVERGGMCHGL 112
N++I Y+ + P + V + + N F +++ ++ G+C G ++ G H
Sbjct: 139 NSMIHGYACNGRPKEAVGLFKDLSLNPLERFCGDTFVLATVVGACTNLGALDCGKQIHAR 198
Query: 113 ALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAA 172
+ + V+F+ + +SL+N+YG G +D A ++ M D S ++++SG+ G M+ A
Sbjct: 199 IVVDEVEFDSVLGSSLVNLYGKCGDIDSANHVLNLMKEPDAFSLSALISGYASCGRMNDA 258
Query: 173 HELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRS 232
+F + VV WN MISGY + +L+LF M + G + + T ASVL+AC
Sbjct: 259 RRIFCLKSNXCVVLWNSMISGYVANNEALEALELFNNMRRKGVQEDYSTFASVLSACSTL 318
Query: 233 ARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQ------------------------ 268
++G VH + + +II+D+AL+D+YSKC+
Sbjct: 319 GIIDQGIQVHAHVYKVGFTNDIIIDSALVDMYSKCRRPDDACKLFSDLQAYDTILLNSMI 378
Query: 269 -------KVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSI 321
+++ A+++FD+M ++L+ WN+MI+G + P E + LF + +
Sbjct: 379 TVYSNCGRIDDARQIFDTMPSKSLISWNSMIVGFSQNACPIEALDLFCEM-----NKLGL 433
Query: 322 SPDEITFIGVICACVRAELLTEGRKYFRQM----IDFYKIKPNFAHYWCMANLYAGAELT 377
D+ + GVI AC L G + F + ++F +I + + Y L
Sbjct: 434 RMDKFSLAGVISACASISSLELGEQIFARATIIGLEFDQIIST-----SLVDFYCKCGLV 488
Query: 378 EEAEEILRKMPEDNDNMSFESIMWVSLL 405
E ++ +M M + + W S+L
Sbjct: 489 EHGRKLFDRM------MKSDEVPWNSML 510
Score = 113 bits (282), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 68/238 (28%), Positives = 121/238 (50%), Gaps = 9/238 (3%)
Query: 112 LALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSA 171
+ +K G + + N +++Y G + + +F + ++LISWN + VR G++
Sbjct: 735 MLIKVGFNTHTFLGNRCLDLYSQLGTGNDSLRVFEDIIDKNLISWNIFLKAFVRFGELER 794
Query: 172 AHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGR 231
A ++FD MP+R+VVSWN MISGY G + + F EM K+G R + T +++L+
Sbjct: 795 ARDVFDEMPKRDVVSWNTMISGYVSFGLFDDAFRFFSEMQKAGIRPSGFTYSTLLSFVSS 854
Query: 232 SARFNEGRSVHGYTVRTSLK-PNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNA 290
+ R G+ +H +R + N+++ +LI +Y K V+ A VF +M + +++ WN+
Sbjct: 855 ACR---GKQIHASMIRNGVDLSNVVVGNSLIGMYGKFGVVDYAFGVFITMEELDIISWNS 911
Query: 291 MILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYF 348
+I G ++ F + SPD+ T VI C + L +G + F
Sbjct: 912 LIWSCGKSGYQNLALRQFVLM-----RSVGYSPDQFTVSTVITVCSNLQDLEKGEQIF 964
Score = 112 bits (281), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 78/318 (24%), Positives = 143/318 (44%), Gaps = 61/318 (19%)
Query: 88 YTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFE-LPVMNSLINMYGCFGAMDCARNMFV 146
++ GSC G + RG H L LK+GV L + N L+ MY +M A+ +F
Sbjct: 7 HSLARQLGSCNNYGSIYRGRXLHILFLKSGVLHSVLSIGNRLLQMYSRCNSMREAQQLFE 66
Query: 147 QMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNI----------------- 189
+M R+ SWN+++ G+++SG + ELFD MP ++ SWN+
Sbjct: 67 EMPKRNCFSWNTMIEGYLKSGSKGKSLELFDSMPHKDAFSWNVVISGFAKEGNLEVARRL 126
Query: 190 --------------MISGYSKSGNPGCSLKLFREMMKSG---FRGNDKTMASVLTACGRS 232
MI GY+ +G P ++ LF+++ + F G+ +A+V+ AC
Sbjct: 127 FNEMPWKNGIAWNSMIHGYACNGRPKEAVGLFKDLSLNPLERFCGDTFVLATVVGACTNL 186
Query: 233 ARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMI 292
+ G+ +H V ++ + +L ++L++LY KC ++ A V + M + + +A+I
Sbjct: 187 GALDCGKQIHARIVVDEVEFDSVLGSSLVNLYGKCGDIDSANHVLNLMKEPDAFSLSALI 246
Query: 293 LGHCIHGKPEEGIKLF-----------TALVNGTVAGGS---------------ISPDEI 326
G+ G+ + ++F ++++G VA + D
Sbjct: 247 SGYASCGRMNDARRIFCLKSNXCVVLWNSMISGYVANNEALEALELFNNMRRKGVQEDYS 306
Query: 327 TFIGVICACVRAELLTEG 344
TF V+ AC ++ +G
Sbjct: 307 TFASVLSACSTLGIIDQG 324
>gi|357167109|ref|XP_003581008.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g02750-like [Brachypodium distachyon]
Length = 921
Score = 228 bits (581), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 126/433 (29%), Positives = 223/433 (51%), Gaps = 11/433 (2%)
Query: 52 TFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHG 111
T +I Y+ + ++ + + +NG +P+ + S F +C+ G +E G H
Sbjct: 383 TISWAGMIAGYAQNGRSEEALDLLQALHRNGMLPSLSSLTSSFLACSHIGALETGRQVHS 442
Query: 112 LALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSA 171
LA+K G F V N+LI+MYG M+ R +F +M +D +SWNS ++ V++ +
Sbjct: 443 LAVKAGCQFNSYVCNALISMYGKCRNMEYVRQVFNRMRVKDTVSWNSFIAALVQNNMLED 502
Query: 172 AHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGR 231
A +FD M R+VVSW +IS Y+++ +++ F+ M+ + N + +L+ CG
Sbjct: 503 ARHIFDNMLSRDVVSWTTIISAYAQAERGDEAVEFFKTMLHEHEKPNSPILTILLSVCGG 562
Query: 232 SARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAM 291
G+ +H ++ + +I+ AL+ +Y KC + + +VFDSM +R++ WN
Sbjct: 563 LGSAKLGQQIHTVAIKHGMDSELIVANALMSMYFKCGCAD-SHKVFDSMEERDIFTWNTF 621
Query: 292 ILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQM 351
I G HG E IK++ + + V P+E+TF+G++ AC A L+ EG ++F+ M
Sbjct: 622 ITGCAQHGLGREAIKMYEHMESVGVL-----PNEVTFVGLLNACSHAGLVDEGWQFFKSM 676
Query: 352 IDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQ 411
Y + P HY CM +L + AE+ + MP + D +++W +LL C+
Sbjct: 677 SRDYGLTPLLEHYACMVDLLGRTGDVQGAEKFIYDMPIEPD-----TVIWSALLGACKIH 731
Query: 412 GAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRL 471
+ R A+ +P + Y L N+Y+ G W +VA +R++MK+R + + PGC
Sbjct: 732 KNAEIGRRAAEKLFTTEPSNAGNYVMLSNIYSSLGMWVEVAELRKIMKQRGVSKEPGCSW 791
Query: 472 VDLKEVVEKLKVG 484
+ ++ V G
Sbjct: 792 MQIRNKVHSFVTG 804
Score = 125 bits (313), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 93/365 (25%), Positives = 168/365 (46%), Gaps = 29/365 (7%)
Query: 43 VFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGC 102
VF + + N++I AY NS + + + + I G + + +S + +
Sbjct: 55 VFDAMPHRDIIAWNSMISAYCNSGMLEDARILF-DAISGGNVRTATILLSGYARLGRVLD 113
Query: 103 VERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSG 162
R + G+ +N V + N++++ Y G + AR +F M RD+ SWNS+V+G
Sbjct: 114 ARR--VFDGMPERNTVAW-----NAMVSCYVQNGDITMARRLFDAMPSRDVTSWNSMVTG 166
Query: 163 HVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTM 222
+ S M A LF MP+RN+V+W +MISGY + G +FR M G +
Sbjct: 167 YCHSRQMVDAWNLFKQMPQRNLVTWTVMISGYVRIEQHGKGWDIFRMMHHEGASPDQSNF 226
Query: 223 ASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSK-CQKVEVAQRVFDSMA 281
ASVL+A + ++T + ++++ T+++++Y++ +++A + FD M
Sbjct: 227 ASVLSAVTGLQDLGVLEVLRPLVLKTGFESDVVIGTSILNVYTRDASALDIAIKFFDGMV 286
Query: 282 DRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELL 341
+RN W+ MI G+ + I ++ G SI P + + + C R +
Sbjct: 287 ERNEYTWSTMIAALSHGGRIDAAIAVY-----GRDPVKSI-PSQTALLTGLARCGR---I 337
Query: 342 TEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMW 401
TE R F Q+ D P + M Y + +EA+E+ +MP N +I W
Sbjct: 338 TEARILFEQIPD-----PIVVSWNAMITGYMQNGMVDEAKELFDRMPFRN------TISW 386
Query: 402 VSLLS 406
+++
Sbjct: 387 AGMIA 391
Score = 122 bits (306), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 81/320 (25%), Positives = 159/320 (49%), Gaps = 19/320 (5%)
Query: 42 LVFKCINNPGTFCVNAVIKAYS-NSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKT 100
LV K +++ Y+ ++ D + F+ M++ N YT+ ++ + +
Sbjct: 248 LVLKTGFESDVVIGTSILNVYTRDASALDIAIKFFDGMVER----NEYTWSTMIAALSHG 303
Query: 101 GCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIV 160
G ++ +G ++ V +P +L+ G + AR +F Q+ ++SWN+++
Sbjct: 304 GRIDAAIAVYG---RDPVK-SIPSQTALLTGLARCGRITEARILFEQIPDPIVVSWNAMI 359
Query: 161 SGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDK 220
+G++++G + A ELFD MP RN +SW MI+GY+++G +L L + + ++G +
Sbjct: 360 TGYMQNGMVDEAKELFDRMPFRNTISWAGMIAGYAQNGRSEEALDLLQALHRNGMLPSLS 419
Query: 221 TMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSM 280
++ S AC GR VH V+ + N + ALI +Y KC+ +E ++VF+ M
Sbjct: 420 SLTSSFLACSHIGALETGRQVHSLAVKAGCQFNSYVCNALISMYGKCRNMEYVRQVFNRM 479
Query: 281 ADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAEL 340
++ V WN+ I + E+ +F + +S D +++ +I A +AE
Sbjct: 480 RVKDTVSWNSFIAALVQNNMLEDARHIFDNM---------LSRDVVSWTTIISAYAQAER 530
Query: 341 LTEGRKYFRQMIDFYKIKPN 360
E ++F+ M+ ++ KPN
Sbjct: 531 GDEAVEFFKTMLHEHE-KPN 549
Score = 78.6 bits (192), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 56/188 (29%), Positives = 91/188 (48%), Gaps = 19/188 (10%)
Query: 165 RSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMAS 224
R G + A E+FD MP R++++WN MIS Y SG + LF + SG GN +T
Sbjct: 45 RLGRLREAREVFDAMPHRDIIAWNSMISAYCNSGMLEDARILFDAI--SG--GNVRTATI 100
Query: 225 VLTACGRSARFNEGRSV-HGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADR 283
+L+ R R + R V G R ++ N A++ Y + + +A+R+FD+M R
Sbjct: 101 LLSGYARLGRVLDARRVFDGMPERNTVAWN-----AMVSCYVQNGDITMARRLFDAMPSR 155
Query: 284 NLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTE 343
++ WN+M+ G+C + + LF + + +T+ +I VR E +
Sbjct: 156 DVTSWNSMVTGYCHSRQMVDAWNLFKQMPQRNL---------VTWTVMISGYVRIEQHGK 206
Query: 344 GRKYFRQM 351
G FR M
Sbjct: 207 GWDIFRMM 214
Score = 44.3 bits (103), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 36/64 (56%)
Query: 258 TALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVA 317
+A I ++ ++ A+ VFD+M R+++ WN+MI +C G E+ LF A+ G V
Sbjct: 37 SARIRELARLGRLREAREVFDAMPHRDIIAWNSMISAYCNSGMLEDARILFDAISGGNVR 96
Query: 318 GGSI 321
+I
Sbjct: 97 TATI 100
>gi|359480846|ref|XP_002280702.2| PREDICTED: pentatricopeptide repeat-containing protein
At2g22070-like [Vitis vinifera]
Length = 785
Score = 228 bits (581), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 132/429 (30%), Positives = 230/429 (53%), Gaps = 16/429 (3%)
Query: 56 NAVIKAYSNSCVPDQGV-VFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLAL 114
NA+I Y+ + + +F ++ + P+ +T S +CA ++ G H +
Sbjct: 246 NAMISGYNQHGFDREALDIFSKMLMDSSSKPDKFTLASALSACANLENLKLGKQIHAHII 305
Query: 115 KNGVDFELPVMNSLINMYGCFGAMDCARNMFVQ--MSPRDLISWNSIVSGHVRSGDMSAA 172
+ D V N+LI+MY G ++ A+ + Q +S D+I++ +++ G+V+ GD++ A
Sbjct: 306 RTEFDTFGAVGNALISMYSKSGGVEIAQKIIEQSMISNLDVIAFTALLDGYVKLGDINPA 365
Query: 173 HELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRS 232
+FD + R+VV+W MI GY ++G +++LFR M+K G + N+ T+A++L+
Sbjct: 366 RRIFDSLRVRDVVAWTAMIVGYVQNGFNQDAMELFRSMIKEGPKPNNYTLATMLSVSSSL 425
Query: 233 ARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMA-DRNLVCWNAM 291
A + GR +H R+ ++ + ALI +Y+K + A+ VF+ + R+ + W +M
Sbjct: 426 ASLDHGRQIHASATRSGNASSVSVSNALITMYAKSGSINDARWVFNLIHWKRDTITWTSM 485
Query: 292 ILGHCIHGKPEEGIKLFTALV-NGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQ 350
I+ HG EE + LF ++ NG I PD IT++GV+ AC L+ +GR Y+
Sbjct: 486 IIALAQHGLGEEALTLFERMLENG------IKPDHITYVGVLSACTHVGLVEQGRSYYNL 539
Query: 351 MIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRF 410
M + +KI P +HY CM +L+ A L +EA + MP + D I W SLL+ C+
Sbjct: 540 MQNAHKIIPTPSHYACMIDLFGRAGLLQEAHAFIENMPIEPD-----VIAWGSLLASCKV 594
Query: 411 QGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCR 470
V + E A+ + ++P++ Y L NVY+ GQWE+ A +R+ MK + + + G
Sbjct: 595 HKNVELAEVAAERLLLIEPENSGAYSALANVYSACGQWENAANIRKSMKDKGVKKDQGFS 654
Query: 471 LVDLKEVVE 479
V +K V
Sbjct: 655 WVQIKNKVH 663
Score = 155 bits (392), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 95/324 (29%), Positives = 158/324 (48%), Gaps = 35/324 (10%)
Query: 23 WTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNG 82
W I +L A G + VF+ + P + A+I Y+ + + + +M+ +
Sbjct: 82 WNI-ILSGYAKGGRLEEAHRVFEEMPEPDSVSWTAMIVGYNQMGQFENAIGMFREMVSDD 140
Query: 83 FMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCAR 142
P +T ++ SCA C+ G H +K+G+ + V NSL+NMY G A+
Sbjct: 141 VPPTQFTLTNVLASCAAVECLGIGRKVHSFVVKHGLSSYISVANSLLNMYAKSGDPVTAK 200
Query: 143 NMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGC 202
+F +M + SWN+++S H++SG + A F+ M ER+VVSWN MISGY++ G
Sbjct: 201 IVFDRMKLKSTSSWNTMISSHMQSGLVDLAQVQFEQMIERDVVSWNAMISGYNQHGFDRE 260
Query: 203 SLKLFREMMKSGFRGNDK-TMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALI 261
+L +F +M+ DK T+AS L+AC G+ +H + +RT + ALI
Sbjct: 261 ALDIFSKMLMDSSSKPDKFTLASALSACANLENLKLGKQIHAHIIRTEFDTFGAVGNALI 320
Query: 262 DLYSKCQKVEVAQ---------------------------------RVFDSMADRNLVCW 288
+YSK VE+AQ R+FDS+ R++V W
Sbjct: 321 SMYSKSGGVEIAQKIIEQSMISNLDVIAFTALLDGYVKLGDINPARRIFDSLRVRDVVAW 380
Query: 289 NAMILGHCIHGKPEEGIKLFTALV 312
AMI+G+ +G ++ ++LF +++
Sbjct: 381 TAMIVGYVQNGFNQDAMELFRSMI 404
Score = 134 bits (338), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 89/331 (26%), Positives = 158/331 (47%), Gaps = 45/331 (13%)
Query: 106 GGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVR 165
G H +K G+ + +MN+L+N Y G + A +F +M + + SWN I+SG+ +
Sbjct: 32 GKSIHARIIKAGLHLGVFLMNNLMNFYAKTGFIYDAHRVFDEMPVKSVFSWNIILSGYAK 91
Query: 166 SGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASV 225
G + AH +F+ MPE + VSW MI GY++ G ++ +FREM+ T+ +V
Sbjct: 92 GGRLEEAHRVFEEMPEPDSVSWTAMIVGYNQMGQFENAIGMFREMVSDDVPPTQFTLTNV 151
Query: 226 LTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQK---------------- 269
L +C GR VH + V+ L I + +L+++Y+K
Sbjct: 152 LASCAAVECLGIGRKVHSFVVKHGLSSYISVANSLLNMYAKSGDPVTAKIVFDRMKLKST 211
Query: 270 ---------------VEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNG 314
V++AQ F+ M +R++V WNAMI G+ HG E + +F+ ++
Sbjct: 212 SSWNTMISSHMQSGLVDLAQVQFEQMIERDVVSWNAMISGYNQHGFDREALDIFSKMLMD 271
Query: 315 TVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMAN----L 370
+ S PD+ T + AC E L G++ I + I+ F + + N +
Sbjct: 272 S----SSKPDKFTLASALSACANLENLKLGKQ-----IHAHIIRTEFDTFGAVGNALISM 322
Query: 371 YAGAELTEEAEEILRK-MPEDNDNMSFESIM 400
Y+ + E A++I+ + M + D ++F +++
Sbjct: 323 YSKSGGVEIAQKIIEQSMISNLDVIAFTALL 353
>gi|147841045|emb|CAN68552.1| hypothetical protein VITISV_014227 [Vitis vinifera]
Length = 1309
Score = 228 bits (581), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 120/410 (29%), Positives = 216/410 (52%), Gaps = 41/410 (10%)
Query: 75 YLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGC 134
+ ++I+ G P++YT + +C ++ G + H + K G+D + V +L++MYG
Sbjct: 824 FRELIRCGARPDNYTLPFVIRACRDLKNLQMGRLIHHIVYKFGLDLDHFVCAALVDMYG- 882
Query: 135 FGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGY 194
+ ++ A LFD M ER++V+W +MI GY
Sbjct: 883 ------------------------------KCREIEDARFLFDKMXERDLVTWTVMIGGY 912
Query: 195 SKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNI 254
++ GN SL LF +M + G + M +V+ AC + ++ R++ Y R + ++
Sbjct: 913 AECGNANESLVLFDKMREEGVVPDKVAMVTVVFACAKLGAMHKARTIDDYIQRKKFQLDV 972
Query: 255 ILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNG 314
IL TA+ID+++KC VE A+ +FD M ++N++ W+AMI + HG+ + + LF ++
Sbjct: 973 ILGTAMIDMHAKCGCVESAREIFDRMEEKNVISWSAMIAAYGYHGQGRKALDLFPMMLR- 1031
Query: 315 TVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGA 374
I P++IT + ++ AC A L+ EG ++F M + Y ++ + HY C+ +L A
Sbjct: 1032 ----SGILPNKITLVSLLYACSHAGLVEEGLRFFSXMWEDYSVRXDVKHYTCVVDLLGRA 1087
Query: 375 ELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSR 434
+EA +++ M + D +W + L CR V + E+ A S +++ PQ+
Sbjct: 1088 GRLDEALKLIXSMTXEKDEG-----LWGAFLGACRTHKDVXLAEKAATSLLELQPQNPGH 1142
Query: 435 YQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLKEVVEKLKVG 484
Y L N+YA AG+WEDVA++R+LM +RR+ ++PG +++ + VG
Sbjct: 1143 YILLSNIYANAGRWEDVAKIRDLMSQRRLKKIPGWTWIEVDNKSHQFSVG 1192
Score = 223 bits (568), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 119/410 (29%), Positives = 213/410 (51%), Gaps = 41/410 (10%)
Query: 75 YLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGC 134
+ ++I+ G P++YT + +C ++ G + H + K G+D + V +L++MY
Sbjct: 148 FRELIRCGARPDNYTLPFVIRACRDLKNLQMGRLIHHIVYKFGLDLDHFVCAALVDMY-- 205
Query: 135 FGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGY 194
V+ ++ A LFD M ER++V+W +MI GY
Sbjct: 206 -----------------------------VKCREIEDARFLFDKMQERDLVTWTVMIGGY 236
Query: 195 SKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNI 254
++ G SL LF +M + G + M +V+ AC + ++ R + Y R + ++
Sbjct: 237 AECGKANESLVLFEKMREEGVVPDKVAMVTVVFACAKLGAMHKARIIDDYIQRKKFQLDV 296
Query: 255 ILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNG 314
IL TA+ID+Y+KC VE A+ +FD M ++N++ W+AMI + HG+ + + LF +++
Sbjct: 297 ILGTAMIDMYAKCGCVESAREIFDRMEEKNVISWSAMIAAYGYHGQGRKALDLFPMMLS- 355
Query: 315 TVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGA 374
+ PD+IT ++ AC A L+ EG ++F M + Y ++ + HY C+ +L A
Sbjct: 356 ----SGMLPDKITLASLLYACSHAGLVEEGLRFFSSMWEDYSVRTDVKHYTCVVDLLGRA 411
Query: 375 ELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSR 434
+EA ++++ M + D +W + L CR V + E+ A S +++ Q+
Sbjct: 412 GRLDEALKLIKSMTIEKDEG-----LWGAFLGACRTHKDVVLAEKAATSLLELQSQNPGH 466
Query: 435 YQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLKEVVEKLKVG 484
Y L N+YA AG+WEDVA++R+LM +RR+ + PG +++ + VG
Sbjct: 467 YVLLSNIYANAGRWEDVAKIRDLMSQRRLKKTPGWTWIEVDNKSHQFSVG 516
Score = 115 bits (287), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 73/248 (29%), Positives = 123/248 (49%), Gaps = 20/248 (8%)
Query: 169 MSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTA 228
+ A+ LFD M R+ VSW++M+ G++K G+ FRE+++ G R ++ T+ V+ A
Sbjct: 110 LDDAYGLFDGMCVRDSVSWSVMVGGFAKVGDYINCFGTFRELIRCGARPDNYTLPFVIRA 169
Query: 229 CGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCW 288
C GR +H + L + + AL+D+Y KC+++E A+ +FD M +R+LV W
Sbjct: 170 CRDLKNLQMGRLIHHIVYKFGLDLDHFVCAALVDMYVKCREIEDARFLFDKMQERDLVTW 229
Query: 289 NAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYF 348
MI G+ GK E + LF + V PD++ + V+ AC + + + R
Sbjct: 230 TVMIGGYAECGKANESLVLFEKMREEGVV-----PDKVAMVTVVFACAKLGAMHKAR--- 281
Query: 349 RQMIDFY----KIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSL 404
+ID Y K + + M ++YA E A EI +M E N I W ++
Sbjct: 282 --IIDDYIQRKKFQLDVILGTAMIDMYAKCGCVESAREIFDRMEEKN------VISWSAM 333
Query: 405 LSLCRFQG 412
++ + G
Sbjct: 334 IAAYGYHG 341
Score = 114 bits (285), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 73/262 (27%), Positives = 127/262 (48%), Gaps = 12/262 (4%)
Query: 151 RDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREM 210
++LI N +V + + A+ LFD M R+ VSW++M+ G++K G+ FRE+
Sbjct: 768 QNLIVANKLVXFYSYYRALDDAYGLFDGMCVRDSVSWSVMVGGFAKVGDYMNCFGTFREL 827
Query: 211 MKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKV 270
++ G R ++ T+ V+ AC GR +H + L + + AL+D+Y KC+++
Sbjct: 828 IRCGARPDNYTLPFVIRACRDLKNLQMGRLIHHIVYKFGLDLDHFVCAALVDMYGKCREI 887
Query: 271 EVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIG 330
E A+ +FD M +R+LV W MI G+ G E + LF + V PD++ +
Sbjct: 888 EDARFLFDKMXERDLVTWTVMIGGYAECGNANESLVLFDKMREEGVV-----PDKVAMVT 942
Query: 331 VICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPED 390
V+ AC + + + R I K + + M +++A E A EI +M E
Sbjct: 943 VVFACAKLGAMHKART-IDDYIQRKKFQLDVILGTAMIDMHAKCGCVESAREIFDRMEEK 1001
Query: 391 NDNMSFESIMWVSLLSLCRFQG 412
N I W ++++ + G
Sbjct: 1002 N------VISWSAMIAAYGYHG 1017
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 56/247 (22%), Positives = 108/247 (43%), Gaps = 42/247 (17%)
Query: 56 NAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALK 115
+I Y+ ++ +V + +M + G +P+ V++ +CAK G + + + +
Sbjct: 230 TVMIGGYAECGKANESLVLFEKMREEGVVPDKVAMVTVVFACAKLGAMHKARIIDDYIQR 289
Query: 116 NGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHEL 175
++ + ++I+MY G ++ AR +F +M +++ISW++
Sbjct: 290 KKFQLDVILGTAMIDMYAKCGCVESAREIFDRMEEKNVISWSA----------------- 332
Query: 176 FDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARF 235
MI+ Y G +L LF M+ SG + T+AS+L AC +
Sbjct: 333 --------------MIAAYGYHGQGRKALDLFPMMLSSGMLPDKITLASLLYACSHAGLV 378
Query: 236 NEGRSV-----HGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMA-DRNLVCWN 289
EG Y+VRT +K T ++DL + +++ A ++ SM +++ W
Sbjct: 379 EEGLRFFSSMWEDYSVRTDVKHY----TCVVDLLGRAGRLDEALKLIKSMTIEKDEGLWG 434
Query: 290 AMILGHC 296
A LG C
Sbjct: 435 AF-LGAC 440
Score = 70.1 bits (170), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 54/247 (21%), Positives = 106/247 (42%), Gaps = 42/247 (17%)
Query: 56 NAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALK 115
+I Y+ ++ +V + +M + G +P+ V++ +CAK G + + +
Sbjct: 906 TVMIGGYAECGNANESLVLFDKMREEGVVPDKVAMVTVVFACAKLGAMHKARTIDDYIQR 965
Query: 116 NGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHEL 175
++ + ++I+M+ G ++ AR +F +M +++ISW++
Sbjct: 966 KKFQLDVILGTAMIDMHAKCGCVESAREIFDRMEEKNVISWSA----------------- 1008
Query: 176 FDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARF 235
MI+ Y G +L LF M++SG N T+ S+L AC +
Sbjct: 1009 --------------MIAAYGYHGQGRKALDLFPMMLRSGILPNKITLVSLLYACSHAGLV 1054
Query: 236 NEGRSV-----HGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMA-DRNLVCWN 289
EG Y+VR +K T ++DL + +++ A ++ SM +++ W
Sbjct: 1055 EEGLRFFSXMWEDYSVRXDVKHY----TCVVDLLGRAGRLDEALKLIXSMTXEKDEGLWG 1110
Query: 290 AMILGHC 296
A LG C
Sbjct: 1111 AF-LGAC 1116
Score = 48.1 bits (113), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 52/190 (27%), Positives = 73/190 (38%), Gaps = 17/190 (8%)
Query: 208 REMMKSGF----RGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDL 263
RE S F R N K S L C + R VH + NI++ LI
Sbjct: 47 REEESSKFHFLQRLNPKFYISALVNC---RNLTQVRQVHAQASVHGMLENIVVANKLIYF 103
Query: 264 YSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISP 323
YS + ++ A +FD M R+ V W+ M+ G G F L+ P
Sbjct: 104 YSYYRALDDAYGLFDGMCVRDSVSWSVMVGGFAKVGDYINCFGTFRELIR-----CGARP 158
Query: 324 DEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMA--NLYAGAELTEEAE 381
D T VI AC + L GR + YK + H+ C A ++Y E+A
Sbjct: 159 DNYTLPFVIRACRDLKNLQMGRLIHHIV---YKFGLDLDHFVCAALVDMYVKCREIEDAR 215
Query: 382 EILRKMPEDN 391
+ KM E +
Sbjct: 216 FLFDKMQERD 225
Score = 44.7 bits (104), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 41/159 (25%), Positives = 63/159 (39%), Gaps = 10/159 (6%)
Query: 235 FNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILG 294
+ R VH + N+I+ L+ YS + ++ A +FD M R+ V W+ M+ G
Sbjct: 751 LTQVRQVHXQASVHGMLQNLIVANKLVXFYSYYRALDDAYGLFDGMCVRDSVSWSVMVGG 810
Query: 295 HCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDF 354
G F L+ PD T VI AC + L GR +
Sbjct: 811 FAKVGDYMNCFGTFRELIR-----CGARPDNYTLPFVIRACRDLKNLQMGRLIHHIV--- 862
Query: 355 YKIKPNFAHYWCMA--NLYAGAELTEEAEEILRKMPEDN 391
YK + H+ C A ++Y E+A + KM E +
Sbjct: 863 YKFGLDLDHFVCAALVDMYGKCREIEDARFLFDKMXERD 901
Score = 40.0 bits (92), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 34/162 (20%), Positives = 71/162 (43%), Gaps = 7/162 (4%)
Query: 43 VFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGC 102
+F + +A+I AY + + + M+++G +PN T VSL +C+ G
Sbjct: 994 IFDRMEEKNVISWSAMIAAYGYHGQGRKALDLFPMMLRSGILPNKITLVSLLYACSHAGL 1053
Query: 103 VERGGMCHGLALKN-GVDFELPVMNSLINMYGCFGAMDCARNMFVQMS-PRDLISWNSIV 160
VE G ++ V ++ ++++ G G +D A + M+ +D W + +
Sbjct: 1054 VEEGLRFFSXMWEDYSVRXDVKHYTCVVDLLGRAGRLDEALKLIXSMTXEKDEGLWGAFL 1113
Query: 161 SGHVRSGDM----SAAHELFDIMPERNVVSWNIMISGYSKSG 198
D+ AA L ++ P+ N + ++ + Y+ +G
Sbjct: 1114 GACRTHKDVXLAEKAATSLLELQPQ-NPGHYILLSNIYANAG 1154
>gi|449465795|ref|XP_004150613.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g14730-like [Cucumis sativus]
Length = 603
Score = 228 bits (581), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 123/437 (28%), Positives = 220/437 (50%), Gaps = 49/437 (11%)
Query: 56 NAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALK 115
NA+I Y+ D+ + + +M G P+ +T + A G ++ G HG+ +K
Sbjct: 180 NAMINGYAKIGCLDEALEVFRRMHVKGVAPSRFTITGILSVFASRGDLDNGKTVHGIVMK 239
Query: 116 NGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHEL 175
G D + V N+LI+MYG + + A +
Sbjct: 240 MGYDSGVSVSNALIDMYG-------------------------------KCKHIGDALII 268
Query: 176 FDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARF 235
F+++ E+++ SWN +IS + + G+ +L+LF +M+ SG + T+ +VL AC A
Sbjct: 269 FEMINEKDIFSWNSIISVHEQCGDHDGTLRLFDKMLGSGILPDLVTITTVLPACSHLAAL 328
Query: 236 NEGRSVHGYTVRTSLKP--------NIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVC 287
GR +HGY + L N+++ A++D+Y+KC + A ++FDSM+ +++
Sbjct: 329 MHGREIHGYMIINGLGKDDENGAVDNLLVSNAVMDMYAKCGSMNNALKIFDSMSKKDVAS 388
Query: 288 WNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKY 347
WN MI+G+ +HG E + +F+ + P+E+T +GV+ AC A ++ GR +
Sbjct: 389 WNIMIMGYGMHGYALEALGMFSQMCEA-----EFKPNEVTLVGVLSACNHAGFVSHGRLF 443
Query: 348 FRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSL 407
QM + + P HY C+ ++ A E+A EI++KMP + ++W +LL
Sbjct: 444 LAQMESTFGVIPTIEHYTCVIDMLGRAGHLEDAYEIVQKMP-----IQANPVVWRALLGA 498
Query: 408 CRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMP 467
CR G + E A+ + ++P+ Y + NVY V G++E+V VR+ MK++ + + P
Sbjct: 499 CRLHGNAELAEIAARQVLQLEPEHCGSYVLMSNVYGVIGRYEEVLEVRKTMKEQNVKKTP 558
Query: 468 GCRLVDLKEVVEKLKVG 484
GC ++LK+ V + G
Sbjct: 559 GCSWIELKDGVHVFRTG 575
Score = 127 bits (320), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 92/349 (26%), Positives = 165/349 (47%), Gaps = 43/349 (12%)
Query: 6 QIQAHLITSGLFFNNSFWTI-NLLKHSADFGSPDYTVLVF-KCINNPGTFCVNAVIKAYS 63
Q+ + +IT G F+ S +I +L+ + G +LVF + F NA+I +
Sbjct: 32 QLHSLMITYG--FSPSPPSITSLINMYSKCGQMGEAILVFYDPCHERNVFAYNAIISGFV 89
Query: 64 NSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELP 123
++ + +G FY +M G MP+ YTF + +C + V++ HG LK G++ ++
Sbjct: 90 SNGLASKGFQFYKKMRLEGVMPDKYTFPCVVRTCCEVMEVKK---IHGCLLKMGLELDVF 146
Query: 124 VMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERN 183
V ++L+N Y +++G M A ++F + R+
Sbjct: 147 VGSALVNTY-------------------------------LKNGSMEDAQKVFGELSIRD 175
Query: 184 VVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHG 243
VV WN MI+GY+K G +L++FR M G + T+ +L+ + G++VHG
Sbjct: 176 VVLWNAMINGYAKIGCLDEALEVFRRMHVKGVAPSRFTITGILSVFASRGDLDNGKTVHG 235
Query: 244 YTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEE 303
++ + + ALID+Y KC+ + A +F+ + ++++ WN++I H G +
Sbjct: 236 IVMKMGYDSGVSVSNALIDMYGKCKHIGDALIIFEMINEKDIFSWNSIISVHEQCGDHDG 295
Query: 304 GIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMI 352
++LF ++ G I PD +T V+ AC L GR+ MI
Sbjct: 296 TLRLFDKML-----GSGILPDLVTITTVLPACSHLAALMHGREIHGYMI 339
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 72/285 (25%), Positives = 122/285 (42%), Gaps = 49/285 (17%)
Query: 29 KHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSY 88
KH D +++F+ IN F N++I + D + + +M+ +G +P+
Sbjct: 260 KHIGD------ALIIFEMINEKDIFSWNSIISVHEQCGDHDGTLRLFDKMLGSGILPDLV 313
Query: 89 TFVSLFGSCAKTGCVERGGMCHGLALKNGVDFE--------LPVMNSLINMYGCFGAMDC 140
T ++ +C+ + G HG + NG+ + L V N++++MY G+M+
Sbjct: 314 TITTVLPACSHLAALMHGREIHGYMIINGLGKDDENGAVDNLLVSNAVMDMYAKCGSMNN 373
Query: 141 ARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNP 200
A +F MS +D+ SW NIMI GY G
Sbjct: 374 ALKIFDSMSKKDVASW-------------------------------NIMIMGYGMHGYA 402
Query: 201 GCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRT-SLKPNIILDTA 259
+L +F +M ++ F+ N+ T+ VL+AC + + GR T + P I T
Sbjct: 403 LEALGMFSQMCEAEFKPNEVTLVGVLSACNHAGFVSHGRLFLAQMESTFGVIPTIEHYTC 462
Query: 260 LIDLYSKCQKVEVAQRVFDSMA-DRNLVCWNAMILGHC-IHGKPE 302
+ID+ + +E A + M N V W A+ LG C +HG E
Sbjct: 463 VIDMLGRAGHLEDAYEIVQKMPIQANPVVWRAL-LGACRLHGNAE 506
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 57/113 (50%), Gaps = 6/113 (5%)
Query: 224 SVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVF-DSMAD 282
+ L +C N+G+ +H + P+ T+LI++YSKC ++ A VF D +
Sbjct: 16 AFLQSCADHQNLNKGKQLHSLMITYGFSPSPPSITSLINMYSKCGQMGEAILVFYDPCHE 75
Query: 283 RNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICAC 335
RN+ +NA+I G +G +G + + + + G + PD+ TF V+ C
Sbjct: 76 RNVFAYNAIISGFVSNGLASKGFQFYKKM---RLEG--VMPDKYTFPCVVRTC 123
>gi|225453947|ref|XP_002274056.1| PREDICTED: pentatricopeptide repeat-containing protein At2g45350,
chloroplastic-like [Vitis vinifera]
Length = 635
Score = 228 bits (581), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 131/362 (36%), Positives = 206/362 (56%), Gaps = 17/362 (4%)
Query: 126 NSLINMYGCF--GAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERN 183
NS+I+ GC G M+ A ++F QM RD++SW ++V G+ + G++ A LFD MPER+
Sbjct: 257 NSMID--GCVKCGKMENAHHLFNQMPKRDVVSWANMVDGYAKLGEIDIARGLFDEMPERD 314
Query: 184 VVSWNIMISGYSKSGNPGCSLKLFREMM-KSGFRGNDKTMASVLTACGRSARFNEGRSVH 242
V+S N M++GY ++G+ +L F +M+ + ++ T+ L+A + F+EG ++H
Sbjct: 315 VISCNAMMAGYVQNGHLMEALNFFHDMLSRKELFPDNATLLITLSAIAQLGHFDEGVALH 374
Query: 243 GYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPE 302
Y + L ALID+Y+KC ++ A VF+ + D+++ WNA+I G IHG E
Sbjct: 375 CYIEDNGFSLSEKLGVALIDMYAKCGSIDNALSVFEDIDDKSIDHWNAIIGGLAIHGLGE 434
Query: 303 EGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFA 362
+LF + V PD+ITFIGV+ AC A L+ EG F M +K++P
Sbjct: 435 VAFELFMEMEKLFV-----KPDDITFIGVLNACNHAGLVKEGLMCFELMRRVHKVEPKLQ 489
Query: 363 HYWCMANLYAGAELTEEAEEILRKMP-EDNDNMSFESIMWVSLLSLCRFQGAVAMVERLA 421
HY CM ++ A EEA++ + KMP E ND ++W +LLS CR + E +A
Sbjct: 490 HYGCMVDILGRAGHVEEAKKFVEKMPIEPND------VVWRTLLSACRNHENFTIGEPVA 543
Query: 422 KSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLKEVVEKL 481
K + +D + S Y L N+YA G W DV R+R +MK+R + ++PGC ++L+ V +
Sbjct: 544 KHLISVDSYNPSSYVLLSNIYAGFGMWNDVYRIRMMMKQRDLKKIPGCSQIELEGNVHEF 603
Query: 482 KV 483
V
Sbjct: 604 FV 605
Score = 141 bits (355), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 94/351 (26%), Positives = 178/351 (50%), Gaps = 24/351 (6%)
Query: 6 QIQAHLITSGLFFNNSFWTINLLKHSADFGSP--DYTVLVF-------KCINNPGTFCVN 56
QI + LIT+G N S T +L S+ P ++ +F K F N
Sbjct: 32 QIHSRLITTGFINNPSLTTRIILNFSSSSHKPLVEFARYLFMSRHFGRKHRKQDNPFLWN 91
Query: 57 AVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKN 116
A+IK++S+ P + V + M++NG + ++F + +C++ G ++ G HGL +
Sbjct: 92 AIIKSFSHGEDPREAFVIFNLMLENGVCVDKFSFSLVLKACSRLGLIKEGMQIHGLLGRM 151
Query: 117 GVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELF 176
+ ++ + N L+ +Y G + AR +F +M RD +S+NS++ G+V+ G + +A ELF
Sbjct: 152 EIGSDVFLQNCLMCLYLRCGCLGIARQLFDRMMKRDSVSFNSMIDGYVKHGMVKSARELF 211
Query: 177 DIMP--ERNVVSWNIMISGYSKSGNP-GCSLKLFREMMKSGFRGNDKTMASVLTACGRSA 233
D+MP ++N++SWN MISGY++S + +LF EM K + S++ C +
Sbjct: 212 DVMPMEQKNLISWNSMISGYARSEEGLRVAWELFEEMPKRDL----ISWNSMIDGCVKCG 267
Query: 234 RFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMIL 293
+ + K +++ ++D Y+K ++++A+ +FD M +R+++ NAM+
Sbjct: 268 KMENAH----HLFNQMPKRDVVSWANMVDGYAKLGEIDIARGLFDEMPERDVISCNAMMA 323
Query: 294 GHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEG 344
G+ +G E + F + ++ + PD T + + A + EG
Sbjct: 324 GYVQNGHLMEALNFF----HDMLSRKELFPDNATLLITLSAIAQLGHFDEG 370
Score = 62.4 bits (150), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 73/349 (20%), Positives = 127/349 (36%), Gaps = 72/349 (20%)
Query: 26 NLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMI-KNGFM 84
N++ A G D +F + NA++ Y + + + F+ M+ +
Sbjct: 289 NMVDGYAKLGEIDIARGLFDEMPERDVISCNAMMAGYVQNGHLMEALNFFHDMLSRKELF 348
Query: 85 PNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNM 144
P++ T + + A+ G + G H NG + +LI+MY G++D A ++
Sbjct: 349 PDNATLLITLSAIAQLGHFDEGVALHCYIEDNGFSLSEKLGVALIDMYAKCGSIDNALSV 408
Query: 145 FVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSL 204
F + + + WN+I+ G A H L ++ +
Sbjct: 409 FEDIDDKSIDHWNAIIGG-------LAIHGLGEV------------------------AF 437
Query: 205 KLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLY 264
+LF EM K + +D T VL AC + EG +L
Sbjct: 438 ELFMEMEKLFVKPDDITFIGVLNACNHAGLVKEG-------------------LMCFELM 478
Query: 265 SKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPD 324
+ KVE + + M D ILG G EE K + I P+
Sbjct: 479 RRVHKVEPKLQHYGCMVD---------ILGRA--GHVEEAKKFVEKM--------PIEPN 519
Query: 325 EITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAG 373
++ + ++ AC E T G + +I P + Y ++N+YAG
Sbjct: 520 DVVWRTLLSACRNHENFTIGEPVAKHLISVDSYNP--SSYVLLSNIYAG 566
Score = 44.3 bits (103), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 33/141 (23%), Positives = 68/141 (48%), Gaps = 4/141 (2%)
Query: 25 INLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFM 84
+ L+ A GS D + VF+ I++ NA+I + + + +++M K
Sbjct: 390 VALIDMYAKCGSIDNALSVFEDIDDKSIDHWNAIIGGLAIHGLGEVAFELFMEMEKLFVK 449
Query: 85 PNSYTFVSLFGSCAKTGCVERGGMCHGLALK-NGVDFELPVMNSLINMYGCFGAMDCARN 143
P+ TF+ + +C G V+ G MC L + + V+ +L ++++ G G ++ A+
Sbjct: 450 PDDITFIGVLNACNHAGLVKEGLMCFELMRRVHKVEPKLQHYGCMVDILGRAGHVEEAKK 509
Query: 144 MFVQM--SPRDLISWNSIVSG 162
+M P D++ W +++S
Sbjct: 510 FVEKMPIEPNDVV-WRTLLSA 529
>gi|224115616|ref|XP_002332100.1| predicted protein [Populus trichocarpa]
gi|222874920|gb|EEF12051.1| predicted protein [Populus trichocarpa]
Length = 474
Score = 228 bits (581), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 148/485 (30%), Positives = 247/485 (50%), Gaps = 44/485 (9%)
Query: 3 QLLQIQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAY 62
Q+ QI + L T GL F N S + S T L+F +N +AY
Sbjct: 22 QVKQIHSLLTTKGLLFYNP-------NTSPNDNSKWKTTLLFNTLN-----------RAY 63
Query: 63 SNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFEL 122
N Q + + M+ + PNS+TF S+ + A C+ G H A+ GV ++
Sbjct: 64 LNFGQHQQTLHLFALMLAHQTPPNSHTFPSVIKA-ATHSCLFIGTSLHTQAINRGVLYDP 122
Query: 123 PVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPER 182
+ SL+ MY FG + A +F ++S ++ +N+ + + ++GDM +A LF MP+R
Sbjct: 123 FIQTSLLGMYSQFGYLLNACKVFDEISHPCIVEYNATLDAYAKNGDMGSACCLFKSMPKR 182
Query: 183 NVVSWNIMISGYSKSGNPGCSLKLFREMM-----KSGF-RGNDKTMASVLTACGRSARFN 236
+VVSW +I+G++K+G G +++LFREMM K F + N+ T SVL++C A +
Sbjct: 183 DVVSWTSVINGFAKNGLFGEAIRLFREMMLHDDVKCCFVKPNEATYVSVLSSC---ANLD 239
Query: 237 E------GRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNA 290
E G+ +HGY VR + + + T LID Y K + A RV++ M + + WNA
Sbjct: 240 ERGVLCIGKQIHGYIVRNEVFVTVFIGTTLIDFYGKVGCLSNAIRVYNQMMVKKVCTWNA 299
Query: 291 MILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQ 350
+I +G+ E+ + +F + G + P+E+TFI V+ AC RA+L+ G + F+
Sbjct: 300 IISSLANNGREEQALDMFKKM-----KGEGLCPNEVTFIAVLTACARAKLVEIGLELFQS 354
Query: 351 MIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRF 410
M + + P HY C+ +L A L EA E +R+MP + D + +LL C+
Sbjct: 355 MAGEFGLVPIMEHYGCVVDLLGMAGLLREASEFIRRMPFEPDASALG-----ALLGACKI 409
Query: 411 QGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCR 470
GA+ + + +++ PQ +Y L +++ +W A +R+ M + R+ +P C
Sbjct: 410 HGAIDLGNEVGSRLLELQPQHCGQYVALSSIHVGVNRWGVAADIRKTMVEARIRIVPACS 469
Query: 471 LVDLK 475
L+D K
Sbjct: 470 LIDCK 474
>gi|357502061|ref|XP_003621319.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355496334|gb|AES77537.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 605
Score = 228 bits (581), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 125/359 (34%), Positives = 197/359 (54%), Gaps = 11/359 (3%)
Query: 126 NSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVV 185
N++++ + G MD A +F +M+ RD++SW+++V G+ ++GDM A LFD P +N+V
Sbjct: 225 NTMLDGFTKAGEMDKAFKLFERMAERDIVSWSTMVCGYSKNGDMDMARMLFDRCPVKNLV 284
Query: 186 SWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYT 245
W +ISGY++ G ++ L EM KSG R +D S+L AC S G+ +H
Sbjct: 285 LWTTIISGYAEKGQVKEAMNLCDEMEKSGLRLDDGFFISILAACAESGMLGLGKKMHDSF 344
Query: 246 VRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSM-ADRNLVCWNAMILGHCIHGKPEEG 304
+R+ + + + + ID+Y+KC V+ A RVF+ M +++LV WN+MI G IHG E+
Sbjct: 345 LRSRFRCSTKVLNSFIDMYAKCGCVDDAFRVFNGMKTEKDLVSWNSMIHGFGIHGHGEKS 404
Query: 305 IKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHY 364
I+LF +V PD TFIG++CAC A L+ EGR YF M Y I P HY
Sbjct: 405 IELFNTMVR-----EGFKPDRYTFIGLLCACTHAGLVNEGRGYFYSMQRVYGIVPQIEHY 459
Query: 365 WCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSF 424
CM +L +EA ++R MP + + +I+ +LL CR V + ++K
Sbjct: 460 GCMVDLLGRGGHLKEAFWLVRSMPFEPN-----AIILGTLLGACRMHNDVKLATSVSKYL 514
Query: 425 VDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLKEVVEKLKV 483
+ P D + L N+YA +G W +VA+VR+ M + G ++++E V + V
Sbjct: 515 FKLVPSDPGNFSLLSNIYAQSGDWINVAKVRKQMNDEGGQKPSGVSSIEVEEEVHEFTV 573
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 76/337 (22%), Positives = 153/337 (45%), Gaps = 46/337 (13%)
Query: 159 IVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMK---SGF 215
+++ + + ++S+A +F+ +P+ NV +N +I YS SGN SL F ++K G
Sbjct: 60 LIASYSLTNNLSSAVNVFNQVPDPNVHLYNYLIRAYSLSGNESNSLCAFGVLLKMHVDGV 119
Query: 216 RGNDKTMASVLTAC-GRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQ 274
++ T +L C G S+ + + VH + + +I + +LID Y +C VE+A
Sbjct: 120 LADNFTYPFLLKGCNGSSSWLSLVKMVHAHVEKLGFYWDIFVPNSLIDCYCRCGDVEMAM 179
Query: 275 RVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLF-----------TALVNGTVAGGSISP 323
+VF M +R++V WN+M+ G +G + +K+F +++G G +
Sbjct: 180 KVFSGMEERDVVSWNSMVGGLVKNGDLDGALKVFDEMPERDRVSWNTMLDGFTKAGEMDK 239
Query: 324 -----------DEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYA 372
D +++ ++C + + R F D +K N + + + YA
Sbjct: 240 AFKLFERMAERDIVSWSTMVCGYSKNGDMDMARMLF----DRCPVK-NLVLWTTIISGYA 294
Query: 373 GAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDF 432
+EA + +M + + + ++S+L+ C G + + +++ SF+
Sbjct: 295 EKGQVKEAMNLCDEM--EKSGLRLDDGFFISILAACAESGMLGLGKKMHDSFLR------ 346
Query: 433 SRYQ-------FLLNVYAVAGQWEDVARVRELMKKRR 462
SR++ +++YA G +D RV MK +
Sbjct: 347 SRFRCSTKVLNSFIDMYAKCGCVDDAFRVFNGMKTEK 383
Score = 68.2 bits (165), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 61/240 (25%), Positives = 101/240 (42%), Gaps = 37/240 (15%)
Query: 57 AVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKN 116
+I Y+ + + +M K+G + F+S+ +CA++G + G H L++
Sbjct: 288 TIISGYAEKGQVKEAMNLCDEMEKSGLRLDDGFFISILAACAESGMLGLGKKMHDSFLRS 347
Query: 117 GVDFELPVMNSLINMYGCFGAMDCARNMFVQM-SPRDLISWNSIVSGHVRSGDMSAAHEL 175
V+NS I+MY G +D A +F M + +DL+SWNS
Sbjct: 348 RFRCSTKVLNSFIDMYAKCGCVDDAFRVFNGMKTEKDLVSWNS----------------- 390
Query: 176 FDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARF 235
MI G+ G+ S++LF M++ GF+ + T +L AC +
Sbjct: 391 --------------MIHGFGIHGHGEKSIELFNTMVREGFKPDRYTFIGLLCACTHAGLV 436
Query: 236 NEGRSVHGYTVRT-SLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILG 294
NEGR R + P I ++DL + ++ A + SM NA+ILG
Sbjct: 437 NEGRGYFYSMQRVYGIVPQIEHYGCMVDLLGRGGHLKEAFWLVRSMPFEP----NAIILG 492
>gi|147857367|emb|CAN80796.1| hypothetical protein VITISV_034275 [Vitis vinifera]
Length = 771
Score = 228 bits (581), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 130/461 (28%), Positives = 220/461 (47%), Gaps = 41/461 (8%)
Query: 24 TINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGF 83
T LL A G +F + A+I S ++G +++M +
Sbjct: 235 TTALLDMYAKCGHLGLARQLFNGLTQKTVVSWTAMIAGCIRSNRLEEGTKLFIRMQEENI 294
Query: 84 MPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARN 143
PN T +SL C TG ++ G H L+NG L + +L++MYG
Sbjct: 295 FPNEITMLSLIVECGFTGALQLGKQLHAYILRNGFSVSLALATALVDMYG---------- 344
Query: 144 MFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCS 203
+ D+ A LFD R+V+ W M+S Y+++ +
Sbjct: 345 ---------------------KCSDIRNARALFDSTQNRDVMIWTAMLSAYAQANCIDQA 383
Query: 204 LKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDL 263
LF +M SG R T+ S+L+ C + + G+ VH Y + ++ + IL+TAL+D+
Sbjct: 384 FNLFDQMRTSGVRPTKVTIVSLLSLCAVAGALDLGKWVHSYIDKERVEVDCILNTALVDM 443
Query: 264 YSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISP 323
Y+KC + A R+F R++ WNA+I G +HG EE + +F + + P
Sbjct: 444 YAKCGDINAAGRLFIEAISRDICMWNAIITGFAMHGYGEEALDIFAEMER-----QGVKP 498
Query: 324 DEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEI 383
++ITFIG++ AC A L+TEG+K F +M+ + + P HY CM +L A L +EA E+
Sbjct: 499 NDITFIGLLHACSHAGLVTEGKKLFEKMVHTFGLVPQIEHYGCMVDLLGRAGLLDEAHEM 558
Query: 384 LRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYA 443
++ MP + +I+W +L++ CR + E A ++++P++ + N+YA
Sbjct: 559 IKSMP-----IKPNTIVWGALVAACRLHKNPQLGELAATQLLEIEPENCGYNVLMSNIYA 613
Query: 444 VAGQWEDVARVRELMKKRRMGRMPGCRLVDLKEVVEKLKVG 484
A +W D A VR+ MK M + PG ++++ V + +G
Sbjct: 614 AANRWSDAAGVRKTMKTVGMKKEPGHSVIEVNGTVHEFLMG 654
Score = 106 bits (264), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 99/397 (24%), Positives = 175/397 (44%), Gaps = 73/397 (18%)
Query: 92 SLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPR 151
S+ +C + + G HG LK G+D ++ V N+L+ MYG ++ AR +F +M R
Sbjct: 99 SVLKACGQVSWTQLGKEIHGFVLKKGLDRDVFVGNALMLMYGECACVEYARLVFDKMMER 158
Query: 152 DLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMM 211
D++SW++++ R+ + FD+ +L+L REM
Sbjct: 159 DVVSWSTMIRSLSRNKE-------FDM------------------------ALELIREMN 187
Query: 212 KSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPN--IILDTALIDLYSKCQK 269
R ++ M S++ +A G+++H Y +R S + + TAL+D+Y+KC
Sbjct: 188 FMQVRPSEVAMVSMVNLFADTANMRMGKAMHAYVIRNSNNEHMGVPTTTALLDMYAKCGH 247
Query: 270 VEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFI 329
+ +A+++F+ + + +V W AMI G + EEG KLF + +I P+EIT +
Sbjct: 248 LGLARQLFNGLTQKTVVSWTAMIAGCIRSNRLEEGTKLFIRMQE-----ENIFPNEITML 302
Query: 330 GVICACVRAELLTEGRKYF---------------RQMIDFY----KIKPNFAHY------ 364
+I C L G++ ++D Y I+ A +
Sbjct: 303 SLIVECGFTGALQLGKQLHAYILRNGFSVSLALATALVDMYGKCSDIRNARALFDSTQNR 362
Query: 365 ----W-CMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVER 419
W M + YA A ++A + +M + +I VSLLSLC GA+ + +
Sbjct: 363 DVMIWTAMLSAYAQANCIDQAFNLFDQMRTSGVRPTKVTI--VSLLSLCAVAGALDL-GK 419
Query: 420 LAKSFVDMD--PQDFSRYQFLLNVYAVAGQWEDVARV 454
S++D + D L+++YA G R+
Sbjct: 420 WVHSYIDKERVEVDCILNTALVDMYAKCGDINAAGRL 456
>gi|356505262|ref|XP_003521411.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g37570-like [Glycine max]
Length = 566
Score = 228 bits (581), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 151/532 (28%), Positives = 259/532 (48%), Gaps = 77/532 (14%)
Query: 2 KQLLQIQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKA 61
+ L Q+ A +I GL ++ + + + + Y VF + P T N +IK+
Sbjct: 43 EHLEQVHACIIHRGLEQDHFLVFLFISRAHTLLSTLSYASSVFHRVLAPSTVLWNTLIKS 102
Query: 62 YSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFE 121
+ + + + +M +G +P+S+T+ S+ +C+ T G HG A + GVD +
Sbjct: 103 HCQKNLFSHTLSAFARMKAHGALPDSFTYPSVIKACSGTCKAREGKSLHGSAFRCGVDQD 162
Query: 122 LPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISW------------------------- 156
L V SLI+MYG G + AR +F MS R+++SW
Sbjct: 163 LYVGTSLIDMYGKCGEIADARKVFDGMSDRNVVSWTAMLVGYVAVGDVVEARKLFDEMPH 222
Query: 157 ------NSIVSGHVRSGDMSAAHELFDIMPERNVVS------------------------ 186
NS++ G V+ GD+S A +FD MPE+NVVS
Sbjct: 223 RNVASWNSMLQGFVKMGDLSGARGVFDAMPEKNVVSFTTMIDGYAKAGDMAAARFLFDCS 282
Query: 187 -------WNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGR 239
W+ +ISGY ++G P +L++F EM + ++ + S+++A + +
Sbjct: 283 LEKDVVAWSALISGYVQNGLPNQALRVFLEMELMNVKPDEFILVSLMSASAQLGHLELAQ 342
Query: 240 SVHGYTVR--TSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCI 297
V Y + L+ + ++ AL+D+ +KC +E A ++FD R++V + +MI G I
Sbjct: 343 WVDSYVSKICIDLQQDHVI-AALLDMNAKCGNMERALKLFDEKPRRDVVLYCSMIQGLSI 401
Query: 298 HGKPEEGIKLFT-ALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYK 356
HG+ EE + LF L+ G ++PDE+ F ++ AC RA L+ EGR YF+ M Y
Sbjct: 402 HGRGEEAVNLFNRMLMEG------LTPDEVAFTVILTACSRAGLVDEGRNYFQSMKQKYC 455
Query: 357 IKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAM 416
I P HY CM +L + + +A E+++ +P + + W +LL C+ G +
Sbjct: 456 ISPLPDHYACMVDLLSRSGHIRDAYELIKLIPWEP-----HAGAWGALLGACKLYGDSEL 510
Query: 417 VERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPG 468
E +A +++P + + Y L ++YA A +W DV+ VR M++RR+ ++PG
Sbjct: 511 GEIVANRLFELEPLNAANYVLLSDIYAAAERWIDVSLVRSKMRERRVRKIPG 562
>gi|356496086|ref|XP_003516901.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g31920-like [Glycine max]
Length = 605
Score = 228 bits (581), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 140/485 (28%), Positives = 248/485 (51%), Gaps = 47/485 (9%)
Query: 1 MKQLLQIQAHLITSGLFFNNSFWTINLLKHSA--DFGSPDYTVLVFKCINNPGTFCVNAV 58
M++ ++ AH++ GLF++ SF NL+ A +GS +Y +F+ I PG+F N +
Sbjct: 44 MEEFKKVHAHILKLGLFYD-SFCGSNLVASCALSRWGSMEYACSIFRQIEEPGSFEYNTM 102
Query: 59 IKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGV 118
I+ NS ++ ++ Y++M++ G P+++T+ + +C+ ++ G H G+
Sbjct: 103 IRGNVNSMDLEEALLLYVEMLERGIEPDNFTYPFVLKACSLLVALKEGVQIHAHVFNAGL 162
Query: 119 DFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDI 178
+ ++ V N LI+MYG GA++ A +F Q
Sbjct: 163 EVDVFVQNGLISMYGKCGAIEHAGVVFEQ------------------------------- 191
Query: 179 MPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSG-FRGNDKTMASVLTACGRSARFNE 237
M E++V SW+ +I ++ L L +M + G R + + S L+AC N
Sbjct: 192 MDEKSVASWSSIIGAHASVEMWHECLMLLGDMSREGRHRAEESILVSALSACTHLGSPNL 251
Query: 238 GRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCI 297
GR +HG +R + N+++ T+LID+Y KC +E VF +MA +N + MI G I
Sbjct: 252 GRCIHGILLRNISELNVVVKTSLIDMYVKCGSLEKGLCVFQNMAHKNRYSYTVMIAGLAI 311
Query: 298 HGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKI 357
HG+ E +++F+ ++ ++PD++ ++GV+ AC A L+ EG + F +M + I
Sbjct: 312 HGRGREALRVFSDMLE-----EGLTPDDVVYVGVLSACSHAGLVKEGFQCFNRMQFEHMI 366
Query: 358 KPNFAHYWCMANLYAGAELTEEAEEILRKMP-EDNDNMSFESIMWVSLLSLCRFQGAVAM 416
KP HY CM +L A + +EA ++++ MP + ND ++W SLLS C+ + +
Sbjct: 367 KPTIQHYGCMVDLMGRAGMLKEAYDLIKSMPIKPND------VVWRSLLSACKVHHNLEI 420
Query: 417 VERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLKE 476
E A + ++ + Y L N+YA A +W +VAR+R M ++ + + PG LV+
Sbjct: 421 GEIAADNIFKLNKHNPGDYLVLANMYARAQKWANVARIRTEMVEKNLVQTPGFSLVEANR 480
Query: 477 VVEKL 481
V K
Sbjct: 481 NVYKF 485
>gi|296090287|emb|CBI40106.3| unnamed protein product [Vitis vinifera]
Length = 590
Score = 228 bits (581), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 138/452 (30%), Positives = 220/452 (48%), Gaps = 42/452 (9%)
Query: 43 VFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGC 102
VF P NA+I + + ++G+ F+ M + G +P+ + F+ + G C T
Sbjct: 158 VFTNTPEPNCVSYNALITGFVENQQLERGLEFFKLMRQQGLIPDRFAFMGVLGICTTTEN 217
Query: 103 VERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSG 162
++RG H +K +D + N +I MY S +LI
Sbjct: 218 LKRGAELHCQTVKLNLDSTPFIGNVIITMY----------------SELNLIQ------- 254
Query: 163 HVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMK-SGFRGNDKT 221
A + F ++ E++V+SWN +I+ S + L++F+ M + + R +D T
Sbjct: 255 --------EAEKAFRLIEEKDVISWNTLIAACSHCDDHAKGLRVFKHMTEETNVRPDDFT 306
Query: 222 MASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMA 281
S L AC A + G+ +H + +RT L ++ + AL+++Y+KC + A +F M
Sbjct: 307 FTSALAACAGLASMSHGKQIHAHLMRTRLYQDLGVGNALVNMYAKCGCIGYAYDIFSKMV 366
Query: 282 DRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELL 341
NLV WN +I G HG E ++LF + I PD +TFIG++ AC A L+
Sbjct: 367 HHNLVSWNTIIAGFGNHGLGERAVELFEQM-----NASGIRPDSVTFIGLLTACNHAGLV 421
Query: 342 TEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMW 401
+G+ YF M + Y I P+ H+ C+ ++ A EAEE +RK P ND ++
Sbjct: 422 DKGQLYFNSMEETYGIAPDIEHFSCLIDMLGRAGRLNEAEEYMRKFPFWND-----PVVL 476
Query: 402 VSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKR 461
VSLLS R G V + ERLAK + + P S Y L N+YA G W+ VA R+ +K
Sbjct: 477 VSLLSASRLHGDVVIGERLAKWLLKLQPVTTSPYVLLSNLYASDGMWDSVAEARKRLKGS 536
Query: 462 RMGRMPGCRLVDLKEVVEKLKVGHFWRGGMKE 493
+ + PG L+++ VEK +G F +KE
Sbjct: 537 GLKKEPGHSLIEVNGSVEKFTIGDFTHLRIKE 568
Score = 107 bits (267), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 91/390 (23%), Positives = 163/390 (41%), Gaps = 46/390 (11%)
Query: 5 LQIQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSN 64
L + A ++ +G ++ F + ++L A G + VF + +A+I Y
Sbjct: 23 LSLHAAVLKTGTQ-SDVFMSNHVLNMYAKCGHTTFARQVFDEMFEKNLVSWSAMISGYDQ 81
Query: 65 SCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPV 124
+ P + Y QM +PN Y F S+ +CA V G H +LK G + V
Sbjct: 82 AGEPQMAIDLYSQMF---LVPNEYVFASVISACASLSAVTLGQKIHSRSLKFGYESISFV 138
Query: 125 MNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNV 184
NSLI+MY M C + S A +F PE N
Sbjct: 139 SNSLISMY-----MKCNQ--------------------------CSDALSVFTNTPEPNC 167
Query: 185 VSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGY 244
VS+N +I+G+ ++ L+ F+ M + G + VL C + G +H
Sbjct: 168 VSYNALITGFVENQQLERGLEFFKLMRQQGLIPDRFAFMGVLGICTTTENLKRGAELHCQ 227
Query: 245 TVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILG--HC-IHGKP 301
TV+ +L + +I +YS+ ++ A++ F + +++++ WN +I HC H K
Sbjct: 228 TVKLNLDSTPFIGNVIITMYSELNLIQEAEKAFRLIEEKDVISWNTLIAACSHCDDHAK- 286
Query: 302 EEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNF 361
G+++F + T ++ PD+ TF + AC ++ G++ ++ ++ +
Sbjct: 287 --GLRVFKHMTEET----NVRPDDFTFTSALAACAGLASMSHGKQIHAHLMR-TRLYQDL 339
Query: 362 AHYWCMANLYAGAELTEEAEEILRKMPEDN 391
+ N+YA A +I KM N
Sbjct: 340 GVGNALVNMYAKCGCIGYAYDIFSKMVHHN 369
Score = 106 bits (265), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 83/348 (23%), Positives = 147/348 (42%), Gaps = 49/348 (14%)
Query: 89 TFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQM 148
T SL C+KT + G H LK G ++ + N ++NMY G AR +F +M
Sbjct: 5 TLSSLLHHCSKTKALRCGLSLHAAVLKTGTQSDVFMSNHVLNMYAKCGHTTFARQVFDEM 64
Query: 149 SPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFR 208
++L+SW++++S GY ++G P ++ L+
Sbjct: 65 FEKNLVSWSAMIS-------------------------------GYDQAGEPQMAIDLYS 93
Query: 209 EMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQ 268
+M N+ ASV++AC + G+ +H +++ + + +LI +Y KC
Sbjct: 94 QMF---LVPNEYVFASVISACASLSAVTLGQKIHSRSLKFGYESISFVSNSLISMYMKCN 150
Query: 269 KVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITF 328
+ A VF + + N V +NA+I G + + E G++ F + + PD F
Sbjct: 151 QCSDALSVFTNTPEPNCVSYNALITGFVENQQLERGLEFFKLMRQ-----QGLIPDRFAF 205
Query: 329 IGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMP 388
+GV+ C E L G + Q + F + +Y+ L +EAE+ R +
Sbjct: 206 MGVLGICTTTENLKRGAELHCQTVKLNLDSTPFIGN-VIITMYSELNLIQEAEKAFRLIE 264
Query: 389 EDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVD---MDPQDFS 433
E + I W +L++ C A R+ K + + P DF+
Sbjct: 265 EK------DVISWNTLIAACSHCDDHAKGLRVFKHMTEETNVRPDDFT 306
Score = 82.8 bits (203), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 45/172 (26%), Positives = 86/172 (50%), Gaps = 9/172 (5%)
Query: 220 KTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDS 279
+T++S+L C ++ G S+H ++T + ++ + ++++Y+KC A++VFD
Sbjct: 4 ETLSSLLHHCSKTKALRCGLSLHAAVLKTGTQSDVFMSNHVLNMYAKCGHTTFARQVFDE 63
Query: 280 MADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAE 339
M ++NLV W+AMI G+ G+P+ I L++ + + P+E F VI AC
Sbjct: 64 MFEKNLVSWSAMISGYDQAGEPQMAIDLYSQMF--------LVPNEYVFASVISACASLS 115
Query: 340 LLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDN 391
+T G+K + + F +F + ++Y +A + PE N
Sbjct: 116 AVTLGQKIHSRSLKFGYESISFVSN-SLISMYMKCNQCSDALSVFTNTPEPN 166
Score = 45.8 bits (107), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 43/183 (23%), Positives = 78/183 (42%), Gaps = 10/183 (5%)
Query: 6 QIQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSNS 65
QI AHL+ + L+ + L+ A G Y +F + + N +I + N
Sbjct: 325 QIHAHLMRTRLYQDLGVGNA-LVNMYAKCGCIGYAYDIFSKMVHHNLVSWNTIIAGFGNH 383
Query: 66 CVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMC-HGLALKNGVDFELPV 124
+ ++ V + QM +G P+S TF+ L +C G V++G + + + G+ ++
Sbjct: 384 GLGERAVELFEQMNASGIRPDSVTFIGLLTACNHAGLVDKGQLYFNSMEETYGIAPDIEH 443
Query: 125 MNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNV 184
+ LI+M G G ++ A R WN V V +SA+ D++ +
Sbjct: 444 FSCLIDMLGRAGRLNEAEEYM-----RKFPFWNDPV---VLVSLLSASRLHGDVVIGERL 495
Query: 185 VSW 187
W
Sbjct: 496 AKW 498
>gi|413916018|gb|AFW55950.1| hypothetical protein ZEAMMB73_919937 [Zea mays]
Length = 864
Score = 228 bits (580), Expect = 7e-57, Method: Compositional matrix adjust.
Identities = 127/444 (28%), Positives = 228/444 (51%), Gaps = 43/444 (9%)
Query: 42 LVFKCINNPGTFCVNAVIKAY-SNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKT 100
LVF+ + + NA+I A N C D + +M+++G P+ +T+ S+ +CA
Sbjct: 409 LVFQEMEQRDSVSWNAIIAALEQNECYEDT-IAHLNEMLRSGMEPDDFTYGSVLKACAGL 467
Query: 101 GCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIV 160
+E G + HG A+K+G+ + V +++++MY
Sbjct: 468 QSLEYGLVVHGKAIKSGLGLDAFVSSTVVDMY---------------------------- 499
Query: 161 SGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDK 220
+ G ++ A +L D + + +VSWN +ISG+S + + + F EM+ G + +
Sbjct: 500 ---CKCGAITEAQKLHDRIGGQELVSWNSIISGFSLTKQSEEAQRFFSEMLDMGVKPDHF 556
Query: 221 TMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSM 280
T A+VL C A G+ +HG ++ + + + + L+D+Y+KC + + +F+
Sbjct: 557 TYATVLDTCANLATIELGKQIHGQIIKQEMLGDEYISSTLVDMYAKCGNMPDSLLMFEKA 616
Query: 281 ADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAEL 340
+ V WNAMI G+ +HG+ E +++F + V P+ TF+ V+ AC L
Sbjct: 617 RKLDFVSWNAMICGYALHGQGLEALEMFERMQRANVV-----PNHATFVAVLRACSHVGL 671
Query: 341 LTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIM 400
L +G +YF M YK+ P H+ CM ++ ++ +EA E +R MP + D +++
Sbjct: 672 LDDGCQYFHLMTSRYKLVPQLEHFACMVDILGRSKGPQEALEFIRSMPIEAD-----AVV 726
Query: 401 WVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKK 460
W +LLS+C+ + V + E A + + +DP D S Y L NVYA +G+W DV+R R LM++
Sbjct: 727 WKTLLSICKIRQDVEVAETAASNVLRLDPDDASVYILLSNVYAGSGKWVDVSRTRRLMRQ 786
Query: 461 RRMGRMPGCRLVDLKEVVEKLKVG 484
R+ + PGC ++++ + VG
Sbjct: 787 GRLRKEPGCSWIEVQSEMHGFLVG 810
Score = 135 bits (340), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 79/232 (34%), Positives = 120/232 (51%), Gaps = 3/232 (1%)
Query: 82 GFMPNSYTFVSLFGSCAKTG--CVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMD 139
GF+ + TF L+ CA G + G H L +G V N L+ MY G
Sbjct: 13 GFVATA-TFSHLYQLCASAGRSALTTGQAAHARMLVSGFMPTTFVSNCLLQMYARCGGTA 71
Query: 140 CARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGN 199
A +F M RD +SWN++++ +V +GD A LF MP+ +VVSWN +ISGY + G
Sbjct: 72 HAHGVFDTMPHRDTVSWNTMLTAYVHAGDTDTAASLFGTMPDPDVVSWNTLISGYCQHGM 131
Query: 200 PGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTA 259
S+ L EM + G + T+A +L +CG G +H V+T L+ ++ +A
Sbjct: 132 FRNSVGLSMEMSRRGVALDRTTLAVLLKSCGGLDDLALGVQIHALAVKTGLETDVRAGSA 191
Query: 260 LIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTAL 311
L+D+Y KC+ ++ A R F M +RN V W A I G + + G++LF +
Sbjct: 192 LVDMYGKCRSLDDALRFFHGMGERNSVSWGAAIAGCVQNEQYTRGMELFVQM 243
Score = 107 bits (268), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 67/297 (22%), Positives = 136/297 (45%), Gaps = 36/297 (12%)
Query: 56 NAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALK 115
NA++ + + + + + M ++G + + +F +CA+ +G H LA+K
Sbjct: 322 NAMMVGLVRTGLGAEAMQLFQFMTRSGVGFDVISLSGVFSACAEVKGYFQGLQVHCLAVK 381
Query: 116 NGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHEL 175
+G D ++ V N+++++YG + + A+ +
Sbjct: 382 SGFDVDVCVRNAILDLYG-------------------------------KCKALVEAYLV 410
Query: 176 FDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARF 235
F M +R+ VSWN +I+ ++ ++ EM++SG +D T SVL AC
Sbjct: 411 FQEMEQRDSVSWNAIIAALEQNECYEDTIAHLNEMLRSGMEPDDFTYGSVLKACAGLQSL 470
Query: 236 NEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGH 295
G VHG +++ L + + + ++D+Y KC + AQ++ D + + LV WN++I G
Sbjct: 471 EYGLVVHGKAIKSGLGLDAFVSSTVVDMYCKCGAITEAQKLHDRIGGQELVSWNSIISGF 530
Query: 296 CIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMI 352
+ + EE + F+ +++ + PD T+ V+ C + G++ Q+I
Sbjct: 531 SLTKQSEEAQRFFSEMLD-----MGVKPDHFTYATVLDTCANLATIELGKQIHGQII 582
Score = 103 bits (258), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 92/404 (22%), Positives = 168/404 (41%), Gaps = 51/404 (12%)
Query: 35 GSPDYTVLVFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLF 94
G D +F + +P N +I Y + V ++M + G + T L
Sbjct: 99 GDTDTAASLFGTMPDPDVVSWNTLISGYCQHGMFRNSVGLSMEMSRRGVALDRTTLAVLL 158
Query: 95 GSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLI 154
SC + G H LA+K G++ ++ ++L++MYG ++D
Sbjct: 159 KSCGGLDDLALGVQIHALAVKTGLETDVRAGSALVDMYGKCRSLD--------------- 203
Query: 155 SWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSG 214
A F M ERN VSW I+G ++ ++LF +M + G
Sbjct: 204 ----------------DALRFFHGMGERNSVSWGAAIAGCVQNEQYTRGMELFVQMQRLG 247
Query: 215 FRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQ 274
+ AS +C + R +H + ++ + ++ TA++D+Y+K + A+
Sbjct: 248 LGVSQPAYASAFRSCAAMPCLSTARQLHAHAIKNVFSSDRVVGTAIVDVYAKAGNLVDAR 307
Query: 275 RVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICA 334
R F + N+ NAM++G G E ++LF + V D I+ GV A
Sbjct: 308 RAFIGLPHHNVETCNAMMVGLVRTGLGAEAMQLFQFMTRSGVG-----FDVISLSGVFSA 362
Query: 335 CVRAELLTEGRKYFRQM-IDFYKIKPNFAHYWCMAN----LYAGAELTEEAEEILRKMPE 389
C E + YF+ + + +K F C+ N LY + EA + ++M E
Sbjct: 363 C------AEVKGYFQGLQVHCLAVKSGFDVDVCVRNAILDLYGKCKALVEAYLVFQEM-E 415
Query: 390 DNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFS 433
D++S+ +I+ + C ++ +A + + +S M+P DF+
Sbjct: 416 QRDSVSWNAIIAALEQNEC-YEDTIAHLNEMLRS--GMEPDDFT 456
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 69/275 (25%), Positives = 123/275 (44%), Gaps = 36/275 (13%)
Query: 70 QGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLI 129
+G+ ++QM + G + + S F SCA C+ H A+KN V +S
Sbjct: 235 RGMELFVQMQRLGLGVSQPAYASAFRSCAAMPCLSTARQLHAHAIKN-------VFSS-- 285
Query: 130 NMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNI 189
D + +IV + ++G++ A F +P NV + N
Sbjct: 286 ----------------------DRVVGTAIVDVYAKAGNLVDARRAFIGLPHHNVETCNA 323
Query: 190 MISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTS 249
M+ G ++G +++LF+ M +SG + +++ V +AC + +G VH V++
Sbjct: 324 MMVGLVRTGLGAEAMQLFQFMTRSGVGFDVISLSGVFSACAEVKGYFQGLQVHCLAVKSG 383
Query: 250 LKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFT 309
++ + A++DLY KC+ + A VF M R+ V WNA+I + E +
Sbjct: 384 FDVDVCVRNAILDLYGKCKALVEAYLVFQEMEQRDSVSWNAIIAAL----EQNECYEDTI 439
Query: 310 ALVNGTVAGGSISPDEITFIGVICACVRAELLTEG 344
A +N + G + PD+ T+ V+ AC + L G
Sbjct: 440 AHLNEMLRSG-MEPDDFTYGSVLKACAGLQSLEYG 473
>gi|225470674|ref|XP_002269391.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g13600-like [Vitis vinifera]
Length = 587
Score = 228 bits (580), Expect = 7e-57, Method: Compositional matrix adjust.
Identities = 138/452 (30%), Positives = 220/452 (48%), Gaps = 42/452 (9%)
Query: 43 VFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGC 102
VF P NA+I + + ++G+ F+ M + G +P+ + F+ + G C T
Sbjct: 158 VFTNTPEPNCVSYNALITGFVENQQLERGLEFFKLMRQQGLIPDRFAFMGVLGICTTTEN 217
Query: 103 VERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSG 162
++RG H +K +D + N +I MY S +LI
Sbjct: 218 LKRGAELHCQTVKLNLDSTPFIGNVIITMY----------------SELNLIQ------- 254
Query: 163 HVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMK-SGFRGNDKT 221
A + F ++ E++V+SWN +I+ S + L++F+ M + + R +D T
Sbjct: 255 --------EAEKAFRLIEEKDVISWNTLIAACSHCDDHAKGLRVFKHMTEETNVRPDDFT 306
Query: 222 MASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMA 281
S L AC A + G+ +H + +RT L ++ + AL+++Y+KC + A +F M
Sbjct: 307 FTSALAACAGLASMSHGKQIHAHLMRTRLYQDLGVGNALVNMYAKCGCIGYAYDIFSKMV 366
Query: 282 DRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELL 341
NLV WN +I G HG E ++LF + I PD +TFIG++ AC A L+
Sbjct: 367 HHNLVSWNTIIAGFGNHGLGERAVELFEQM-----NASGIRPDSVTFIGLLTACNHAGLV 421
Query: 342 TEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMW 401
+G+ YF M + Y I P+ H+ C+ ++ A EAEE +RK P ND ++
Sbjct: 422 DKGQLYFNSMEETYGIAPDIEHFSCLIDMLGRAGRLNEAEEYMRKFPFWND-----PVVL 476
Query: 402 VSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKR 461
VSLLS R G V + ERLAK + + P S Y L N+YA G W+ VA R+ +K
Sbjct: 477 VSLLSASRLHGDVVIGERLAKWLLKLQPVTTSPYVLLSNLYASDGMWDSVAEARKRLKGS 536
Query: 462 RMGRMPGCRLVDLKEVVEKLKVGHFWRGGMKE 493
+ + PG L+++ VEK +G F +KE
Sbjct: 537 GLKKEPGHSLIEVNGSVEKFTIGDFTHLRIKE 568
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 91/390 (23%), Positives = 163/390 (41%), Gaps = 46/390 (11%)
Query: 5 LQIQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSN 64
L + A ++ +G ++ F + ++L A G + VF + +A+I Y
Sbjct: 23 LSLHAAVLKTGTQ-SDVFMSNHVLNMYAKCGHTTFARQVFDEMFEKNLVSWSAMISGYDQ 81
Query: 65 SCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPV 124
+ P + Y QM +PN Y F S+ +CA V G H +LK G + V
Sbjct: 82 AGEPQMAIDLYSQMF---LVPNEYVFASVISACASLSAVTLGQKIHSRSLKFGYESISFV 138
Query: 125 MNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNV 184
NSLI+MY M C + S A +F PE N
Sbjct: 139 SNSLISMY-----MKCNQ--------------------------CSDALSVFTNTPEPNC 167
Query: 185 VSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGY 244
VS+N +I+G+ ++ L+ F+ M + G + VL C + G +H
Sbjct: 168 VSYNALITGFVENQQLERGLEFFKLMRQQGLIPDRFAFMGVLGICTTTENLKRGAELHCQ 227
Query: 245 TVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILG--HC-IHGKP 301
TV+ +L + +I +YS+ ++ A++ F + +++++ WN +I HC H K
Sbjct: 228 TVKLNLDSTPFIGNVIITMYSELNLIQEAEKAFRLIEEKDVISWNTLIAACSHCDDHAK- 286
Query: 302 EEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNF 361
G+++F + T ++ PD+ TF + AC ++ G++ ++ ++ +
Sbjct: 287 --GLRVFKHMTEET----NVRPDDFTFTSALAACAGLASMSHGKQIHAHLMR-TRLYQDL 339
Query: 362 AHYWCMANLYAGAELTEEAEEILRKMPEDN 391
+ N+YA A +I KM N
Sbjct: 340 GVGNALVNMYAKCGCIGYAYDIFSKMVHHN 369
Score = 106 bits (264), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 83/348 (23%), Positives = 147/348 (42%), Gaps = 49/348 (14%)
Query: 89 TFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQM 148
T SL C+KT + G H LK G ++ + N ++NMY G AR +F +M
Sbjct: 5 TLSSLLHHCSKTKALRCGLSLHAAVLKTGTQSDVFMSNHVLNMYAKCGHTTFARQVFDEM 64
Query: 149 SPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFR 208
++L+SW++++S GY ++G P ++ L+
Sbjct: 65 FEKNLVSWSAMIS-------------------------------GYDQAGEPQMAIDLYS 93
Query: 209 EMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQ 268
+M N+ ASV++AC + G+ +H +++ + + +LI +Y KC
Sbjct: 94 QMF---LVPNEYVFASVISACASLSAVTLGQKIHSRSLKFGYESISFVSNSLISMYMKCN 150
Query: 269 KVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITF 328
+ A VF + + N V +NA+I G + + E G++ F + + PD F
Sbjct: 151 QCSDALSVFTNTPEPNCVSYNALITGFVENQQLERGLEFFKLMRQ-----QGLIPDRFAF 205
Query: 329 IGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMP 388
+GV+ C E L G + Q + F + +Y+ L +EAE+ R +
Sbjct: 206 MGVLGICTTTENLKRGAELHCQTVKLNLDSTPFIGN-VIITMYSELNLIQEAEKAFRLIE 264
Query: 389 EDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVD---MDPQDFS 433
E + I W +L++ C A R+ K + + P DF+
Sbjct: 265 EK------DVISWNTLIAACSHCDDHAKGLRVFKHMTEETNVRPDDFT 306
Score = 82.4 bits (202), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 45/172 (26%), Positives = 86/172 (50%), Gaps = 9/172 (5%)
Query: 220 KTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDS 279
+T++S+L C ++ G S+H ++T + ++ + ++++Y+KC A++VFD
Sbjct: 4 ETLSSLLHHCSKTKALRCGLSLHAAVLKTGTQSDVFMSNHVLNMYAKCGHTTFARQVFDE 63
Query: 280 MADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAE 339
M ++NLV W+AMI G+ G+P+ I L++ + + P+E F VI AC
Sbjct: 64 MFEKNLVSWSAMISGYDQAGEPQMAIDLYSQMF--------LVPNEYVFASVISACASLS 115
Query: 340 LLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDN 391
+T G+K + + F +F + ++Y +A + PE N
Sbjct: 116 AVTLGQKIHSRSLKFGYESISFVSN-SLISMYMKCNQCSDALSVFTNTPEPN 166
Score = 45.8 bits (107), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 43/183 (23%), Positives = 78/183 (42%), Gaps = 10/183 (5%)
Query: 6 QIQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSNS 65
QI AHL+ + L+ + L+ A G Y +F + + N +I + N
Sbjct: 325 QIHAHLMRTRLYQDLGVGNA-LVNMYAKCGCIGYAYDIFSKMVHHNLVSWNTIIAGFGNH 383
Query: 66 CVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMC-HGLALKNGVDFELPV 124
+ ++ V + QM +G P+S TF+ L +C G V++G + + + G+ ++
Sbjct: 384 GLGERAVELFEQMNASGIRPDSVTFIGLLTACNHAGLVDKGQLYFNSMEETYGIAPDIEH 443
Query: 125 MNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNV 184
+ LI+M G G ++ A R WN V V +SA+ D++ +
Sbjct: 444 FSCLIDMLGRAGRLNEAEEYM-----RKFPFWNDPV---VLVSLLSASRLHGDVVIGERL 495
Query: 185 VSW 187
W
Sbjct: 496 AKW 498
>gi|297812081|ref|XP_002873924.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297319761|gb|EFH50183.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 939
Score = 228 bits (580), Expect = 7e-57, Method: Compositional matrix adjust.
Identities = 136/398 (34%), Positives = 213/398 (53%), Gaps = 16/398 (4%)
Query: 69 DQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSL 128
D+ +V+Y +M++ G P+ V L + A++ +G HG +K G D + ++
Sbjct: 541 DEALVYYTEMLRRGMKPSEVMMVDLLSASARSVGSSKGLQLHGTIVKMGFDCYDFLQATI 600
Query: 129 INMYGCFGAMDCARNMFVQMSPRDLI-SWNSIVSGHVRSGDMSAAHELFDIMPERNVVSW 187
I+ Y + A F ++S +D I S N++++G V++G + A E+FD ++++ SW
Sbjct: 601 IHFYAVSNNLKLALQQF-EVSVKDHIASRNALIAGFVKNGMVEQAREVFDQTRDKDIFSW 659
Query: 188 NIMISGYSKSGNPGCSLKLFREMMKSG-FRGNDKTMASVLTACGRSARFNEGRSVHGYTV 246
N M+SGY++S +P +L LFREM+ S + + TM SV +A EG+ H Y
Sbjct: 660 NAMMSGYAQSLSPQLALHLFREMISSSQVKPDAITMVSVFSAISSLGSLEEGKRAHEYLN 719
Query: 247 RTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMAD---RNLVCWNAMILGHCIHGKPEE 303
R+S+ PN L A+I++Y+KC +E A +F + + WNA+I G HG +
Sbjct: 720 RSSIPPNDNLIAAIINMYAKCGSIETALNIFHQTKNIFSSTISPWNAIICGSATHGHAKL 779
Query: 304 GIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAH 363
+ L++ L I P+ ITF+GV+ AC A L+ G+ YF M + I+P+ H
Sbjct: 780 ALDLYSDL-----QSLPIKPNSITFVGVLSACCHAGLVELGKTYFESMKSDHGIEPDIKH 834
Query: 364 YWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKS 423
Y CM +L + EEA+E+++ MP D M +W LLS R G V + E A
Sbjct: 835 YGCMVDLLGKSGKLEEAKEMIKNMPVKADVM-----IWGMLLSASRIHGNVEIAELAAAE 889
Query: 424 FVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKR 461
+DP L NVYA AG+WEDVA VRE+M+ R
Sbjct: 890 LAAIDPSHGGCKVMLSNVYADAGRWEDVALVREVMRTR 927
Score = 141 bits (356), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 97/370 (26%), Positives = 171/370 (46%), Gaps = 38/370 (10%)
Query: 50 PGTFCVN--AVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGG 107
P CV+ +IK Y+ + + + + +M G M N T ++ +C+ G +
Sbjct: 388 PERSCVSYTTLIKGYAQNNQWSEAMELFREMRNLGIMLNEVTLATVISACSHLGGIWDCK 447
Query: 108 MCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSG 167
M H LA+K +D + +L+ MY + AR +F +M R+L++WN +++G+ ++G
Sbjct: 448 MLHSLAIKLNLDDRVFASTNLLLMYCICSCLKDARKLFDEMPERNLVTWNVMLNGYSKAG 507
Query: 168 DMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLT 227
+ A ELFD + E+++VSW MI G + +L + EM++ G + ++ M +L+
Sbjct: 508 LIEQAKELFDQITEKDIVSWGTMIDGCLRKNQLDEALVYYTEMLRRGMKPSEVMMVDLLS 567
Query: 228 ACGRSARFNEGRSVHGYTVR-------------------------------TSLKPNIIL 256
A RS ++G +HG V+ S+K +I
Sbjct: 568 ASARSVGSSKGLQLHGTIVKMGFDCYDFLQATIIHFYAVSNNLKLALQQFEVSVKDHIAS 627
Query: 257 DTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTV 316
ALI + K VE A+ VFD D+++ WNAM+ G+ P+ + LF +++ +
Sbjct: 628 RNALIAGFVKNGMVEQAREVFDQTRDKDIFSWNAMMSGYAQSLSPQLALHLFREMISSS- 686
Query: 317 AGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAEL 376
+ PD IT + V A L EG++ + ++ I PN + N+YA
Sbjct: 687 ---QVKPDAITMVSVFSAISSLGSLEEGKRA-HEYLNRSSIPPNDNLIAAIINMYAKCGS 742
Query: 377 TEEAEEILRK 386
E A I +
Sbjct: 743 IETALNIFHQ 752
Score = 141 bits (355), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 83/264 (31%), Positives = 140/264 (53%), Gaps = 9/264 (3%)
Query: 89 TFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQM 148
VS GSCA + V G HG LK+G D + NS++NMY + A ++F
Sbjct: 297 ALVSALGSCASSNDVTCGRQIHGRVLKSGHDSNGFICNSVLNMYAKCRLLVDAESVFRAH 356
Query: 149 SPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFR 208
+ D S+N +V G+ RS + A +LFD+MPER+ VS+ +I GY+++ +++LFR
Sbjct: 357 AKLDSASFNIMVDGYARSRRLGDALKLFDVMPERSCVSYTTLIKGYAQNNQWSEAMELFR 416
Query: 209 EMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQ 268
EM G N+ T+A+V++AC + + +H ++ +L + T L+ +Y C
Sbjct: 417 EMRNLGIMLNEVTLATVISACSHLGGIWDCKMLHSLAIKLNLDDRVFASTNLLLMYCICS 476
Query: 269 KVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITF 328
++ A+++FD M +RNLV WN M+ G+ G E+ +LF + D +++
Sbjct: 477 CLKDARKLFDEMPERNLVTWNVMLNGYSKAGLIEQAKELFDQITE---------KDIVSW 527
Query: 329 IGVICACVRAELLTEGRKYFRQMI 352
+I C+R L E Y+ +M+
Sbjct: 528 GTMIDGCLRKNQLDEALVYYTEML 551
Score = 72.8 bits (177), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 59/266 (22%), Positives = 113/266 (42%), Gaps = 43/266 (16%)
Query: 43 VFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNG-FMPNSYTFVSLFGSCAKTG 101
VF + F NA++ Y+ S P + + +MI + P++ T VS+F + + G
Sbjct: 647 VFDQTRDKDIFSWNAMMSGYAQSLSPQLALHLFREMISSSQVKPDAITMVSVFSAISSLG 706
Query: 102 CVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVS 161
+E G H ++ + ++ ++INMY G+++ A N+F
Sbjct: 707 SLEEGKRAHEYLNRSSIPPNDNLIAAIINMYAKCGSIETALNIF---------------- 750
Query: 162 GHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKT 221
H+ +I + WN +I G + G+ +L L+ ++ + N T
Sbjct: 751 -----------HQTKNIF-SSTISPWNAIICGSATHGHAKLALDLYSDLQSLPIKPNSIT 798
Query: 222 MASVLTACGRS-------ARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQ 274
VL+AC + F +S HG ++P+I ++DL K K+E A+
Sbjct: 799 FVGVLSACCHAGLVELGKTYFESMKSDHG------IEPDIKHYGCMVDLLGKSGKLEEAK 852
Query: 275 RVFDSMADR-NLVCWNAMILGHCIHG 299
+ +M + +++ W ++ IHG
Sbjct: 853 EMIKNMPVKADVMIWGMLLSASRIHG 878
Score = 48.5 bits (114), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 59/288 (20%), Positives = 107/288 (37%), Gaps = 83/288 (28%)
Query: 182 RNVVSWNIMISGYSKSGNPGCSLKL-------------FREMMKSGFRGN----DKTMAS 224
R +WN++ S + S NP + L F + F G ++ + S
Sbjct: 241 RRHKNWNLVTSEFVGSVNPVPATFLLPLISLRPARYFSFPSLTHFDFSGESSNIERALVS 300
Query: 225 VLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRN 284
L +C S GR +HG +++ N + +++++Y+KC+ + A+ VF + A +
Sbjct: 301 ALGSCASSNDVTCGRQIHGRVLKSGHDSNGFICNSVLNMYAKCRLLVDAESVFRAHAKLD 360
Query: 285 LVCWNAMILGHCIHGKPEEGIKLF-----------TALVNGTVAGGSISP---------- 323
+N M+ G+ + + +KLF T L+ G S
Sbjct: 361 SASFNIMVDGYARSRRLGDALKLFDVMPERSCVSYTTLIKGYAQNNQWSEAMELFREMRN 420
Query: 324 -----DEITFIGVICAC----------------VRAEL-------------------LTE 343
+E+T VI AC ++ L L +
Sbjct: 421 LGIMLNEVTLATVISACSHLGGIWDCKMLHSLAIKLNLDDRVFASTNLLLMYCICSCLKD 480
Query: 344 GRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDN 391
RK F +M + N + M N Y+ A L E+A+E+ ++ E +
Sbjct: 481 ARKLFDEMPE-----RNLVTWNVMLNGYSKAGLIEQAKELFDQITEKD 523
>gi|413934702|gb|AFW69253.1| hypothetical protein ZEAMMB73_589560 [Zea mays]
Length = 664
Score = 228 bits (580), Expect = 8e-57, Method: Compositional matrix adjust.
Identities = 124/396 (31%), Positives = 215/396 (54%), Gaps = 10/396 (2%)
Query: 114 LKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAH 173
L G D V NSLI+ Y G + AR +F +M +D+ISW SIV + R DM +A
Sbjct: 185 LLGGFDKHRFVENSLISAYVACGDVGAARKVFDEMLVKDVISWTSIVVAYSRIRDMGSAE 244
Query: 174 ELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSA 233
E+F + P +++V+W M++GY+++ P +L+ F +M +G ++ ++ ++AC +
Sbjct: 245 EVFALCPVKDMVAWTAMVTGYAQNAMPVKALEAFEQMAVAGMPIDEVSLTGAISACAQLG 304
Query: 234 RFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMIL 293
V R L N+++ + L+D+Y+KC ++ A++VF+ M D+N+ +++MI+
Sbjct: 305 AVKRAAWVQEIAERNGLGRNVVVGSGLVDMYAKCGLIDEARKVFEGMHDKNVYTYSSMIV 364
Query: 294 GHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMID 353
G HG+ + I LF N V + P+ +TFIGV+ AC A ++ EGR YF QM D
Sbjct: 365 GLASHGRANDVIALF----NDMVRRADVEPNHVTFIGVLTACSHAGMVKEGRYYFAQMKD 420
Query: 354 FYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGA 413
Y I P+ HY CM +L A + L EA ++++ M + +W +LL CR G
Sbjct: 421 RYGILPSADHYACMVDLLARSGLVTEALDLVKSM-----TVEPHGGVWGALLGACRIHGN 475
Query: 414 VAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVD 473
+ + A+ ++P+ Y L N A AG+W++V+++R+LM+ R + + P +
Sbjct: 476 TEVAKIAAEHLFRLEPEGIGNYVLLSNTLASAGEWDEVSKLRKLMRIRGLKKDPAVSWFE 535
Query: 474 LKE-VVEKLKVGHFWRGGMKEEVNKMMECRQSRSLA 508
++ V + G M E +++E R+ +LA
Sbjct: 536 GRDGFVHQFFAGDNTHPSMHEIKKRLLELREKLNLA 571
>gi|242038163|ref|XP_002466476.1| hypothetical protein SORBIDRAFT_01g008465 [Sorghum bicolor]
gi|241920330|gb|EER93474.1| hypothetical protein SORBIDRAFT_01g008465 [Sorghum bicolor]
Length = 599
Score = 228 bits (580), Expect = 8e-57, Method: Compositional matrix adjust.
Identities = 133/458 (29%), Positives = 229/458 (50%), Gaps = 13/458 (2%)
Query: 6 QIQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSNS 65
Q+ AH++ SG F + + +L+K D G + L+F+ T N ++ Y N
Sbjct: 145 QVHAHVVVSG-FHSRVYLRNSLIKMYIDAGDVETAELMFRSALVLDTVSCNIMLSGYVNE 203
Query: 66 CVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALK--NGVDFELP 123
+ + F+ M G + + YT V+L C + V G HG+ ++ + D L
Sbjct: 204 GCSLKALCFFRDMASRGIVADRYTAVALLTCCGRLKTVLLGRSVHGVIVRRMDAGDNWLI 263
Query: 124 VMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERN 183
++N+L++MY G M+ A +F + S +D ISWN++VSG +G + A F P R+
Sbjct: 264 LVNALLDMYAKCGRMNAAERVFGEASEKDGISWNTMVSGFANAGMLDLASRFFSEAPSRD 323
Query: 184 VVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHG 243
++SWN +++GY++ +KLF +M+ S + T ++++ N +S+HG
Sbjct: 324 LISWNALLAGYARYKGFNEVMKLFHDMLASCVNPDKVTAVTLISVAAGKGSLNHAKSIHG 383
Query: 244 YTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEE 303
+ V+ + L +AL+D++ KC V+VA VF+ D+++ W AMI G +G E
Sbjct: 384 WVVKQFGHQDAFLASALVDMHCKCGNVKVAYYVFEKALDKDVTLWTAMISGLAFNGHGTE 443
Query: 304 GIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAH 363
++LF + +I+P+ +T + V+ AC A LL EG + M Y I+P H
Sbjct: 444 ALELFWKMQT-----EAIAPNGVTLLAVLSACSHAGLLDEGCRILDAMKQKYSIEPGIEH 498
Query: 364 YWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKS 423
+ CM +L A + +A + R+MP M +W S+L+ + E +K
Sbjct: 499 FGCMVDLLARSGKLIDALALARRMP-----MRPSRSIWGSILNASLAGQNTEVAEIASKE 553
Query: 424 FVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKR 461
+ +DP+D Y L N+YA G W VR+ MK++
Sbjct: 554 LLRLDPEDEGGYVLLSNLYAAGGHWNHSDEVRQNMKRK 591
Score = 103 bits (257), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 95/360 (26%), Positives = 149/360 (41%), Gaps = 61/360 (16%)
Query: 7 IQAHLITSGLFFNNSFWTINLLKHSADFGSPDYT----VLVFKCINNPGTFCVNAVIKAY 62
I AHL+ GL +F LL + SP T +L P + N ++ A
Sbjct: 39 ILAHLLRLGLALE-TFPMSRLLHFATAVSSPRLTREAELLFHHFTPRPNLYIYNLMLSAS 97
Query: 63 SNSCV-----PDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNG 117
+ S P Q Y M+ + +P+ TF++L S + + G H + +G
Sbjct: 98 AASAARDSSSPPQAAAVYRSMLASSVLPDEQTFLALLRSVER---LSAGRQVHAHVVVSG 154
Query: 118 VDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFD 177
+ + NSLI MY G ++ A MF D +S N ++SG+V
Sbjct: 155 FHSRVYLRNSLIKMYIDAGDVETAELMFRSALVLDTVSCNIMLSGYV------------- 201
Query: 178 IMPERNVVSWNIMISGYSKSGNPGCSLK---LFREMMKSGFRGNDKTMASVLTACGRSAR 234
N GCSLK FR+M G + T ++LT CGR
Sbjct: 202 ---------------------NEGCSLKALCFFRDMASRGIVADRYTAVALLTCCGRLKT 240
Query: 235 FNEGRSVHGYTVRTSLKPN--IILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMI 292
GRSVHG VR + +IL AL+D+Y+KC ++ A+RVF ++++ + WN M+
Sbjct: 241 VLLGRSVHGVIVRRMDAGDNWLILVNALLDMYAKCGRMNAAERVFGEASEKDGISWNTMV 300
Query: 293 LGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMI 352
G G + + F+ + S D I++ ++ R + E K F M+
Sbjct: 301 SGFANAGMLDLASRFFSE---------APSRDLISWNALLAGYARYKGFNEVMKLFHDML 351
>gi|255584555|ref|XP_002533004.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223527215|gb|EEF29379.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 519
Score = 228 bits (580), Expect = 8e-57, Method: Compositional matrix adjust.
Identities = 120/426 (28%), Positives = 222/426 (52%), Gaps = 14/426 (3%)
Query: 55 VNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLAL 114
V +I ++ ++ + + +M+ PN +TF ++ S + G H +
Sbjct: 67 VTTLIGRFARQHRYEEAMCLFSRMLLLNIKPNEFTFATVIHSSTGLKNIYLGKQLHARTM 126
Query: 115 KNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHE 174
K G++ + V +++++ Y + + ARN F + +++S+ +++ G+++ G + A +
Sbjct: 127 KMGLNTIVFVGSAMLDFYAKLCSFEEARNAFEDIQKPNVVSYTTLIHGYLKKGKIDDALQ 186
Query: 175 LFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSAR 234
LF MPERNVVSWN M+ G+S+ G+ ++ LF EM++ GF N T +T+ A
Sbjct: 187 LFQEMPERNVVSWNAMVGGFSQMGHNEEAVSLFIEMLREGFMPNQSTFPCAITSAANMAS 246
Query: 235 FNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILG 294
G+S H V++ ++ + +L+ Y+KC +E + VF+ + DRN V WNA+I G
Sbjct: 247 LGMGKSFHACAVKSLCTSDVFVCNSLVSFYAKCGSMEDSLLVFNELPDRNTVSWNAVICG 306
Query: 295 HCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDF 354
+G+ E+ + F + + P+ +T +G++CAC A L+ +G YF QM
Sbjct: 307 FAQNGRGEDAVIFFERM-----RAAGLRPNSVTLLGLLCACNHAGLVEKGYMYFNQMRQE 361
Query: 355 YK--IKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQG 412
+KP HY CM +L + +EA + L +P D + W +LL C
Sbjct: 362 EPGILKPE--HYACMVDLLSRFGRLKEAAKFLHDLPFDPG-----TGFWKALLGGCHIHS 414
Query: 413 AVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLV 472
+ + A+ + +DP+D S Y L N Y+ AG+W+ V+ +R MK++ + R+PGC +
Sbjct: 415 NAELSDLAAQKILALDPEDVSSYVMLSNAYSAAGRWQQVSTIRREMKEKGLKRIPGCSWI 474
Query: 473 DLKEVV 478
+++ +
Sbjct: 475 EVRSKI 480
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 62/272 (22%), Positives = 114/272 (41%), Gaps = 37/272 (13%)
Query: 35 GSPDYTVLVFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLF 94
G D + +F+ + NA++ +S ++ V +++M++ GFMPN TF
Sbjct: 179 GKIDDALQLFQEMPERNVVSWNAMVGGFSQMGHNEEAVSLFIEMLREGFMPNQSTFPCAI 238
Query: 95 GSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLI 154
S A + G H A+K+ ++ V NSL++ Y G+M+ + +F ++ R+ +
Sbjct: 239 TSAANMASLGMGKSFHACAVKSLCTSDVFVCNSLVSFYAKCGSMEDSLLVFNELPDRNTV 298
Query: 155 SWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSG 214
SWN++ I G++++G ++ F M +G
Sbjct: 299 SWNAV-------------------------------ICGFAQNGRGEDAVIFFERMRAAG 327
Query: 215 FRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTS---LKPNIILDTALIDLYSKCQKV- 270
R N T+ +L AC + +G + LKP ++DL S+ ++
Sbjct: 328 LRPNSVTLLGLLCACNHAGLVEKGYMYFNQMRQEEPGILKPEHY--ACMVDLLSRFGRLK 385
Query: 271 EVAQRVFDSMADRNLVCWNAMILGHCIHGKPE 302
E A+ + D D W A++ G IH E
Sbjct: 386 EAAKFLHDLPFDPGTGFWKALLGGCHIHSNAE 417
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 52/205 (25%), Positives = 87/205 (42%), Gaps = 36/205 (17%)
Query: 174 ELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSA 233
ELFD MPE +V+S +I +++ ++ LF M+ + N+ T A+V+ +
Sbjct: 54 ELFDEMPELDVLSVTTLIGRFARQHRYEEAMCLFSRMLLLNIKPNEFTFATVIHSSTGLK 113
Query: 234 RFNEGRSVHGYTVRTSL-------------------------------KPNIILDTALID 262
G+ +H T++ L KPN++ T LI
Sbjct: 114 NIYLGKQLHARTMKMGLNTIVFVGSAMLDFYAKLCSFEEARNAFEDIQKPNVVSYTTLIH 173
Query: 263 LYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSIS 322
Y K K++ A ++F M +RN+V WNAM+ G G EE + LF ++
Sbjct: 174 GYLKKGKIDDALQLFQEMPERNVVSWNAMVGGFSQMGHNEEAVSLFIEMLR-----EGFM 228
Query: 323 PDEITFIGVICACVRAELLTEGRKY 347
P++ TF I + L G+ +
Sbjct: 229 PNQSTFPCAITSAANMASLGMGKSF 253
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 58/213 (27%), Positives = 102/213 (47%), Gaps = 14/213 (6%)
Query: 11 LITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSNSCVPDQ 70
L TS +F NS L+ A GS + ++LVF + + T NAVI ++ + +
Sbjct: 261 LCTSDVFVCNS-----LVSFYAKCGSMEDSLLVFNELPDRNTVSWNAVICGFAQNGRGED 315
Query: 71 GVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNS-LI 129
V+F+ +M G PNS T + L +C G VE+G M + P + ++
Sbjct: 316 AVIFFERMRAAGLRPNSVTLLGLLCACNHAGLVEKGYMYFNQMRQEEPGILKPEHYACMV 375
Query: 130 NMYGCFGAMDCARNMFVQMSPRDLIS--WNSIVSG-HVRS-GDMS--AAHELFDIMPERN 183
++ FG + A F+ P D + W +++ G H+ S ++S AA ++ + PE +
Sbjct: 376 DLLSRFGRLKEAAK-FLHDLPFDPGTGFWKALLGGCHIHSNAELSDLAAQKILALDPE-D 433
Query: 184 VVSWNIMISGYSKSGNPGCSLKLFREMMKSGFR 216
V S+ ++ + YS +G + REM + G +
Sbjct: 434 VSSYVMLSNAYSAAGRWQQVSTIRREMKEKGLK 466
>gi|356566136|ref|XP_003551291.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g47840-like [Glycine max]
Length = 733
Score = 228 bits (580), Expect = 8e-57, Method: Compositional matrix adjust.
Identities = 140/479 (29%), Positives = 230/479 (48%), Gaps = 44/479 (9%)
Query: 7 IQAHLITSGLFFNNSFWTINLLKHSADF-GSPDYTVLVFKCINNPGTFCVNAVIKAYSNS 65
I I G F+ S + IN L + G PDY + +F+ + P +I Y
Sbjct: 247 IHTQTIKQG--FDESSFVINTLATMYNKCGKPDYVMRLFEKMRMPDVVSWTTLISTYVQM 304
Query: 66 CVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVM 125
+ V + +M K+ PN YTF ++ SCA + G HG L+ G+ L V
Sbjct: 305 GEEEHAVEAFKRMRKSYVSPNKYTFAAVISSCANLAAAKWGEQIHGHVLRLGLVNALSVA 364
Query: 126 NSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVV 185
NS+I +Y G + A +F ++ +D+ISW++I+S + + G A E FD +
Sbjct: 365 NSIITLYSKCGLLKSASLVFHGITRKDIISWSTIISVYSQGG---YAKEAFDYL------ 415
Query: 186 SWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYT 245
SW M + G + N+ ++SVL+ CG A +G+ VH +
Sbjct: 416 SW----------------------MRREGPKPNEFALSSVLSVCGSMALLEQGKQVHAHL 453
Query: 246 VRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGI 305
+ + ++ +A+I +YSKC V+ A ++F+ M +++ W AMI G+ HG +E I
Sbjct: 454 LCIGIDHEAMVHSAIISMYSKCGSVQEASKIFNGMKINDIISWTAMINGYAEHGYSQEAI 513
Query: 306 KLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYW 365
LF ++ + PD + FIGV+ AC A ++ G YF M + Y+I P+ HY
Sbjct: 514 NLFE-----KISSVGLKPDYVMFIGVLTACNHAGMVDLGFYYFMLMTNVYRISPSKEHYG 568
Query: 366 CMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFV 425
C+ +L A EAE I+R MP D+ ++W +LL CR G V A+ +
Sbjct: 569 CLIDLLCRAGRLSEAEHIIRSMPFHTDD-----VVWSTLLRACRVHGDVDRGRWTAEQLL 623
Query: 426 DMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLKEVVEKLKVG 484
+DP + L N+YA G+W++ A +R+LMK + + + G V++ + + G
Sbjct: 624 QLDPNSAGTHITLANIYAAKGRWKEAAHIRKLMKSKGVIKERGWSWVNVNDQLNAFVAG 682
Score = 99.0 bits (245), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 79/290 (27%), Positives = 131/290 (45%), Gaps = 17/290 (5%)
Query: 149 SPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFR 208
S +++ NS + V+ G + A +FD M R+ +SW +I+GY + + +L LF
Sbjct: 53 SVHNMLELNSELKQLVKQGQLCKARYMFDKMTHRDEISWTTLIAGYVNASDSYEALILFS 112
Query: 209 EMMKSGFRGNDKTMASV-LTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKC 267
M D+ M SV L AC G +HG++V++ L ++ + +ALID+Y K
Sbjct: 113 NMWVHPGPQRDQFMISVALKACALGVNICFGELLHGFSVKSGLIHSVFVSSALIDMYMKV 172
Query: 268 QKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEIT 327
K+E RVF+ M RN+V W A+I G G EG+ F+ + V D T
Sbjct: 173 GKIEQGCRVFEKMMTRNVVSWTAIIAGLVHAGYNMEGLLYFSEMWRSKVG-----YDSHT 227
Query: 328 FIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKM 387
F + A + LL G+ Q I + +F +A +Y + + KM
Sbjct: 228 FAIALKASADSSLLHHGKAIHTQTIKQGFDESSFV-INTLATMYNKCGKPDYVMRLFEKM 286
Query: 388 PEDNDNMSFESIMWVSLLS----LCRFQGAVAMVERLAKSFVDMDPQDFS 433
+ + W +L+S + + AV +R+ KS+V + F+
Sbjct: 287 RMP------DVVSWTTLISTYVQMGEEEHAVEAFKRMRKSYVSPNKYTFA 330
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 81/389 (20%), Positives = 164/389 (42%), Gaps = 39/389 (10%)
Query: 12 ITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSNSCVPDQG 71
+ SGL ++ F + L+ G + VF+ + A+I ++ +G
Sbjct: 151 VKSGLI-HSVFVSSALIDMYMKVGKIEQGCRVFEKMMTRNVVSWTAIIAGLVHAGYNMEG 209
Query: 72 VVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINM 131
++++ +M ++ +S+TF + A + + G H +K G D V+N+L M
Sbjct: 210 LLYFSEMWRSKVGYDSHTFAIALKASADSSLLHHGKAIHTQTIKQGFDESSFVINTLATM 269
Query: 132 YGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMI 191
Y G D +F +M D++SW +++S +V+ G+ A
Sbjct: 270 YNKCGKPDYVMRLFEKMRMPDVVSWTTLISTYVQMGEEEHA------------------- 310
Query: 192 SGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLK 251
++ F+ M KS N T A+V+++C A G +HG+ +R L
Sbjct: 311 ------------VEAFKRMRKSYVSPNKYTFAAVISSCANLAAAKWGEQIHGHVLRLGLV 358
Query: 252 PNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTAL 311
+ + ++I LYSKC ++ A VF + ++++ W+ +I + G +E + +
Sbjct: 359 NALSVANSIITLYSKCGLLKSASLVFHGITRKDIISWSTIISVYSQGGYAKEAFDYLSWM 418
Query: 312 VNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLY 371
P+E V+ C LL +G++ ++ H + ++Y
Sbjct: 419 RR-----EGPKPNEFALSSVLSVCGSMALLEQGKQVHAHLLCIGIDHEAMVHS-AIISMY 472
Query: 372 AGAELTEEAEEILRKMPEDNDNMSFESIM 400
+ +EA +I M + ND +S+ +++
Sbjct: 473 SKCGSVQEASKIFNGM-KINDIISWTAMI 500
Score = 90.1 bits (222), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 64/281 (22%), Positives = 123/281 (43%), Gaps = 37/281 (13%)
Query: 56 NAVIKAYSNSCVPDQGVVFYLQM-IKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLAL 114
+I Y N+ + ++ + M + G + + +CA + G + HG ++
Sbjct: 92 TTLIAGYVNASDSYEALILFSNMWVHPGPQRDQFMISVALKACALGVNICFGELLHGFSV 151
Query: 115 KNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHE 174
K+G+ + V ++LI+MY G ++ +F +M R+++SW +I++G V
Sbjct: 152 KSGLIHSVFVSSALIDMYMKVGKIEQGCRVFEKMMTRNVVSWTAIIAGLVH--------- 202
Query: 175 LFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSAR 234
+GY+ G L F EM +S + T A L A S+
Sbjct: 203 -----------------AGYNMEG-----LLYFSEMWRSKVGYDSHTFAIALKASADSSL 240
Query: 235 FNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILG 294
+ G+++H T++ + + L +Y+KC K + R+F+ M ++V W +I
Sbjct: 241 LHHGKAIHTQTIKQGFDESSFVINTLATMYNKCGKPDYVMRLFEKMRMPDVVSWTTLIST 300
Query: 295 HCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICAC 335
+ G+ E ++ F + V SP++ TF VI +C
Sbjct: 301 YVQMGEEEHAVEAFKRMRKSYV-----SPNKYTFAAVISSC 336
>gi|345505216|gb|AEN99832.1| chlororespiratory reduction 4 [Capsella bursa-pastoris]
Length = 617
Score = 228 bits (580), Expect = 8e-57, Method: Compositional matrix adjust.
Identities = 169/590 (28%), Positives = 274/590 (46%), Gaps = 126/590 (21%)
Query: 6 QIQAHLITSGLFFNNSFWTINLLKHSADFGSP-----DYTVLVFK----CINNPG----- 51
+I A LIT+GL N++ T +L +A SP ++ LVF+ C ++PG
Sbjct: 33 KIHARLITTGLIKNSNLSTRIVLAFAA---SPRPYLAEFARLVFREYHVCSSSPGGEVED 89
Query: 52 TFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKT----------G 101
F NAVIK++S+ P Q ++ + M++NG + ++ + +C++ G
Sbjct: 90 PFLWNAVIKSHSHGKDPKQALLLFCLMLENGVSVDKFSMSLVLKACSRLGFVKGGLQIHG 149
Query: 102 CVERGGMCH---------GLALKNG-VDFELPVM-----------NSLINMYGCFGAMDC 140
+ + G+C GL LK G + F + NS+I+ Y G ++
Sbjct: 150 ILRKTGLCSDLFLQNCLIGLYLKCGCLGFARQIFDRMPQRDSVSFNSMIDGYVKRGLIES 209
Query: 141 AR----------------------------------NMFVQMSPRDLISWNSIVSGHVRS 166
AR N+F +M +DLISWNS++ G+V+
Sbjct: 210 ARELFDLMPREVKNLISWNSIISGYAQTSDGVDIASNLFAEMPEKDLISWNSMIDGYVKH 269
Query: 167 GDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREM----------MKSGFR 216
G + A +LFD MP R+VV+W MI GY+K G + LF +M M +G+
Sbjct: 270 GRIEDAKDLFDAMPRRDVVTWATMIDGYAKLGFVHQAKTLFDQMPHRDVVSYNSMMAGYV 329
Query: 217 GN----------------------DKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNI 254
N + T+ VL+A + R ++ +H Y V
Sbjct: 330 QNKYHMEALEIFSDMEKESHLSPDETTLVIVLSAIAQLGRLSKAMDMHLYIVEKQFFLGG 389
Query: 255 ILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNG 314
L ALID+YSKC ++ A VF+ + ++++ WNAMI G IHG E +
Sbjct: 390 KLGVALIDMYSKCGSIQHAMLVFEGIENKSIDHWNAMIGGLAIHGLGESAFDMLL----- 444
Query: 315 TVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGA 374
+ SI PD+ITF+GV+ AC + L+ EG F M +KI+P HY CM ++ + +
Sbjct: 445 QIERRSIKPDDITFVGVLNACSHSGLVKEGLLCFELMRRKHKIEPRLQHYGCMVDILSRS 504
Query: 375 ELTEEAEEILRKMP-EDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFS 433
E A+ ++++MP E ND ++W + L+ C E + K + + S
Sbjct: 505 GSIELAKNLIQEMPIEPND------VIWRTFLTACNHHKEFETGELVGKHLILQAGYNPS 558
Query: 434 RYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLKEVVEKLKV 483
Y L N+YA G+W+DV R+R +MK+R++ ++PGC ++L V + V
Sbjct: 559 SYVLLSNMYASFGKWKDVRRIRTMMKERKIEKIPGCSWIELDGRVHEFFV 608
>gi|225462731|ref|XP_002267928.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
chloroplastic [Vitis vinifera]
gi|302143682|emb|CBI22543.3| unnamed protein product [Vitis vinifera]
Length = 728
Score = 228 bits (580), Expect = 8e-57, Method: Compositional matrix adjust.
Identities = 124/370 (33%), Positives = 201/370 (54%), Gaps = 12/370 (3%)
Query: 116 NGVDFELPV-MNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHE 174
NG+ PV N +I Y G MD ++ +F +M R + S N+++S + R+G++ A E
Sbjct: 322 NGMTEMNPVSYNLMIKGYAVGGQMDDSKRLFEKMPCRTIFSSNTMISVYSRNGEIDKALE 381
Query: 175 LFD-IMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSA 233
LF+ E++ V+WN MISGY SG P +LKL+ M + + T +++ AC
Sbjct: 382 LFEETKNEKDPVTWNSMISGYIHSGQPEEALKLYITMHRLSIQQTQSTFSALFHACSCLG 441
Query: 234 RFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMIL 293
++G+ +H + ++T + N+ + T+LID+YSKC + AQ F S+ N+ W A+I
Sbjct: 442 SLHQGQLLHAHLIKTPFESNVYVGTSLIDMYSKCGSIMEAQTSFVSIFSPNVAAWTALIN 501
Query: 294 GHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMID 353
GH HG E I LF ++ +A P+ TF+GV+ AC RA L+ EG K F M
Sbjct: 502 GHAYHGLGSEAISLFDRMIEQGLA-----PNGATFVGVLSACSRAGLVNEGMKIFHSMER 556
Query: 354 FYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGA 413
Y + P HY C+ +L + EAEE ++KMP + D ++W +LLS C F
Sbjct: 557 CYSVTPTLEHYACVVDLLGRSGHIREAEEFIKKMPLEADG-----VVWGALLSACWFWMD 611
Query: 414 VAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVD 473
+ + ER+A+ DP+ S Y L N+YA G+W + VR++++ ++ + PGC ++
Sbjct: 612 LEVGERVAEKMFSFDPKPISSYVILSNIYAGLGRWREKMMVRKILRGFKVKKDPGCSWIE 671
Query: 474 LKEVVEKLKV 483
L + +
Sbjct: 672 LNNKIHVFSI 681
Score = 122 bits (307), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 86/296 (29%), Positives = 149/296 (50%), Gaps = 37/296 (12%)
Query: 56 NAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALK 115
N +I +YS + + M ++ + TF S+ CA+ C+ G + H L LK
Sbjct: 67 NTMISSYSKHGRFSEALFLVYSMHRSHMKLSESTFSSVLSVCARLRCLRDGKLIHCLVLK 126
Query: 116 NGVD-FELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHE 174
+G + FEL V ++L+ Y + AR +F + R+ + W+ ++ G+V M A
Sbjct: 127 SGSESFEL-VGSALLYFYASCFEIGEARRVFDVLVRRNEVLWSLMLVGYVTCNVMDDALS 185
Query: 175 LFDIMPERNVVSWNIMISGYSKSGNPGC--SLKLFREMMKSG-FRGNDKTMASVLTACGR 231
+F MP R+VV+W +ISG+SK+G+ GC +L++FR MM+SG N+ T V+ ACGR
Sbjct: 186 VFVKMPRRDVVAWTTLISGFSKNGD-GCGKALEIFRLMMRSGETTPNEFTFDCVVRACGR 244
Query: 232 SARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQ----------------------- 268
+ GR+VHG ++ L+ + + AL++ Y +C+
Sbjct: 245 LGILSVGRTVHGLLMKCGLEYDPSIGGALVEFYCECEAIDDALRVCKGVVNPCLNALNSL 304
Query: 269 --------KVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTV 316
++E A+ VF+ M + N V +N MI G+ + G+ ++ +LF + T+
Sbjct: 305 IEGLISMGRIEDAELVFNGMTEMNPVSYNLMIKGYAVGGQMDDSKRLFEKMPCRTI 360
Score = 121 bits (303), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 90/346 (26%), Positives = 163/346 (47%), Gaps = 40/346 (11%)
Query: 147 QMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKL 206
Q + ++IS N +S + + + A +LFD MP+R VVSWN MIS YSK G +L L
Sbjct: 26 QSNLSEIISTNIAISNYAKQSKLDVARQLFDQMPQRTVVSWNTMISSYSKHGRFSEALFL 85
Query: 207 FREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSK 266
M +S + ++ T +SVL+ C R +G+ +H +++ + ++ +AL+ Y+
Sbjct: 86 VYSMHRSHMKLSESTFSSVLSVCARLRCLRDGKLIHCLVLKSGSESFELVGSALLYFYAS 145
Query: 267 CQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLF-----------TALVNG- 314
C ++ A+RVFD + RN V W+ M++G+ ++ + +F T L++G
Sbjct: 146 CFEIGEARRVFDVLVRRNEVLWSLMLVGYVTCNVMDDALSVFVKMPRRDVVAWTTLISGF 205
Query: 315 ----------------TVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDF-YKI 357
+ G +P+E TF V+ AC R +L+ GR ++ +
Sbjct: 206 SKNGDGCGKALEIFRLMMRSGETTPNEFTFDCVVRACGRLGILSVGRTVHGLLMKCGLEY 265
Query: 358 KPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMV 417
P+ + Y E ++A + + + N ++ + + L+S+ R + A
Sbjct: 266 DPSIGG--ALVEFYCECEAIDDALRVCKGVV--NPCLNALNSLIEGLISMGRIEDA---- 317
Query: 418 ERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRM 463
E + +M+P Y ++ YAV GQ +D R+ E M R +
Sbjct: 318 ELVFNGMTEMNPVS---YNLMIKGYAVGGQMDDSKRLFEKMPCRTI 360
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 57/239 (23%), Positives = 102/239 (42%), Gaps = 33/239 (13%)
Query: 56 NAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALK 115
N++I Y +S P++ + Y+ M + TF +LF +C+ G + +G + H +K
Sbjct: 396 NSMISGYIHSGQPEEALKLYITMHRLSIQQTQSTFSALFHACSCLGSLHQGQLLHAHLIK 455
Query: 116 NGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHEL 175
+ + V SLI+MY G++ A+ FV + ++ +W ++++GH G S A L
Sbjct: 456 TPFESNVYVGTSLIDMYSKCGSIMEAQTSFVSIFSPNVAAWTALINGHAYHGLGSEAISL 515
Query: 176 FDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARF 235
FD M++ G N T VL+AC R+
Sbjct: 516 FD-------------------------------RMIEQGLAPNGATFVGVLSACSRAGLV 544
Query: 236 NEGRSV-HGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMA-DRNLVCWNAMI 292
NEG + H S+ P + ++DL + + A+ M + + V W A++
Sbjct: 545 NEGMKIFHSMERCYSVTPTLEHYACVVDLLGRSGHIREAEEFIKKMPLEADGVVWGALL 603
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 48/102 (47%), Gaps = 5/102 (4%)
Query: 244 YTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEE 303
YT S II I Y+K K++VA+++FD M R +V WN MI + HG+ E
Sbjct: 22 YTAHQSNLSEIISTNIAISNYAKQSKLDVARQLFDQMPQRTVVSWNTMISSYSKHGRFSE 81
Query: 304 GIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGR 345
+ L ++ + E TF V+ C R L +G+
Sbjct: 82 ALFLVYSMHR-----SHMKLSESTFSSVLSVCARLRCLRDGK 118
Score = 44.3 bits (103), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 36/158 (22%), Positives = 69/158 (43%), Gaps = 3/158 (1%)
Query: 7 IQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSNSC 66
+ AHLI + F +N + +L+ + GS F I +P A+I ++
Sbjct: 449 LHAHLIKTP-FESNVYVGTSLIDMYSKCGSIMEAQTSFVSIFSPNVAAWTALINGHAYHG 507
Query: 67 VPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERG-GMCHGLALKNGVDFELPVM 125
+ + + + +MI+ G PN TFV + +C++ G V G + H + V L
Sbjct: 508 LGSEAISLFDRMIEQGLAPNGATFVGVLSACSRAGLVNEGMKIFHSMERCYSVTPTLEHY 567
Query: 126 NSLINMYGCFGAMDCARNMFVQMS-PRDLISWNSIVSG 162
++++ G G + A +M D + W +++S
Sbjct: 568 ACVVDLLGRSGHIREAEEFIKKMPLEADGVVWGALLSA 605
>gi|357129337|ref|XP_003566320.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g20230-like [Brachypodium distachyon]
Length = 661
Score = 227 bits (579), Expect = 9e-57, Method: Compositional matrix adjust.
Identities = 141/456 (30%), Positives = 222/456 (48%), Gaps = 17/456 (3%)
Query: 50 PGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMC 109
P N ++ + S V ++M GF P++ + V G
Sbjct: 116 PNVITWNGLVSGLNRSGRALDAVTALVRMHSEGFFPDATGVSCALSAVGDVKEVSVGKQV 175
Query: 110 HGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDM 169
HG +K G + V+ +LI+MYG G D +F + S D+ S N++V+G R+ +
Sbjct: 176 HGYVVKAGCRLDACVVTALIDMYGKCGRADEIVRVFHESSHMDVASCNALVAGLSRNAQV 235
Query: 170 SAAHELFDIM----PERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASV 225
S A LF E NVVSW +++ ++G ++ LFR M G N T+ V
Sbjct: 236 SEALLLFREFICRGVELNVVSWTSIVACCVQNGRDLEAVDLFRTMQSIGVEPNSVTIPCV 295
Query: 226 LTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNL 285
L A A GRS H +++R ++ + +AL+D+Y+KC K A+ +FD+M RN+
Sbjct: 296 LPAFANVAALMHGRSAHCFSLRKGFLHDVYVGSALVDMYAKCGKARHARTIFDAMPSRNV 355
Query: 286 VCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGR 345
V WNAMI G+ +HG ++LF ++ PD +TF V+ AC +A L EGR
Sbjct: 356 VSWNAMIGGYAMHGDAANAVQLFCSMQKCKQ-----KPDLVTFTCVLGACSQAGLTEEGR 410
Query: 346 KYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLL 405
+YF +M + I P HY CM L + +EA +++ +MP + D S +W SLL
Sbjct: 411 RYFNEMQQGHGISPRMEHYACMVTLLGRSGKLDEAYDLINEMPFEPD-----SCIWGSLL 465
Query: 406 SLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGR 465
CR G V + E A+ ++P + Y L N+YA W+ V RVR+ MK + +
Sbjct: 466 GSCRVYGNVLLAEVAAEKLFQLEPGNAGNYVLLSNIYASKKMWDGVNRVRDEMKNMGLKK 525
Query: 466 MPGCRLVDLKEVVEKLKVG---HFWRGGMKEEVNKM 498
GC +++K V L G H + E++N++
Sbjct: 526 EKGCSWIEIKNKVHMLLAGDNSHPMMTAITEKLNQL 561
Score = 110 bits (276), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 75/294 (25%), Positives = 139/294 (47%), Gaps = 13/294 (4%)
Query: 83 FMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCAR 142
F P+ + S SC H A+ +G+ + V +SL++ Y GA AR
Sbjct: 16 FPPDPHLLPSALKSCPAQPLAR---ALHAAAVVSGLAEDPFVASSLLHSYIRLGATGAAR 72
Query: 143 NMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMP----ERNVVSWNIMISGYSKSG 198
++F +M ++++ W+++++G+ GD AA L + M E NV++WN ++SG ++SG
Sbjct: 73 SVFDRMPEKNVVGWSALIAGYSARGDAEAAWGLLEQMRSAGVEPNVITWNGLVSGLNRSG 132
Query: 199 NPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDT 258
++ M GF + ++ L+A G + G+ VHGY V+ + + + T
Sbjct: 133 RALDAVTALVRMHSEGFFPDATGVSCALSAVGDVKEVSVGKQVHGYVVKAGCRLDACVVT 192
Query: 259 ALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAG 318
ALID+Y KC + + RVF + ++ NA++ G + + E + LF + V
Sbjct: 193 ALIDMYGKCGRADEIVRVFHESSHMDVASCNALVAGLSRNAQVSEALLLFREFICRGV-- 250
Query: 319 GSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYA 372
+ +++ ++ CV+ E FR M ++PN C+ +A
Sbjct: 251 ---ELNVVSWTSIVACCVQNGRDLEAVDLFRTMQSI-GVEPNSVTIPCVLPAFA 300
>gi|297834086|ref|XP_002884925.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297330765|gb|EFH61184.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 694
Score = 227 bits (579), Expect = 9e-57, Method: Compositional matrix adjust.
Identities = 156/578 (26%), Positives = 270/578 (46%), Gaps = 91/578 (15%)
Query: 3 QLLQIQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAY 62
QL QI A L+ GL F+ F L+ S+ +G + VF + P F NA+I+ Y
Sbjct: 36 QLRQIHARLLVLGLQFSG-FLITKLIHASSSYGDITFARQVFDDLPRPQVFPWNAIIRGY 94
Query: 63 SNSCVPDQGVVFYLQMIKNGFMPNSYTF-------------------------------- 90
S + ++ Y +M P+S+TF
Sbjct: 95 SRNNHFQDALLMYSKMQLARVSPDSFTFPHLLKACGGLSHLQMGRFVHAQVFRLGFEADV 154
Query: 91 ------VSLFGSCAKTGCV-------------------------ERGGMCHGLAL----- 114
++L+ C + GC + G L +
Sbjct: 155 FVQNGLIALYAKCRRLGCARTVFEGLPLPERTIVSWTAIVSAYAQNGEPVEALEIFSQMR 214
Query: 115 KNGVDFELPVMNSLINMYGCFGAMDCARN-------MFVQMSPRDLISWNSIVSGHVRSG 167
K V + + S++N + C ++ R+ M ++ P LIS N++ + + G
Sbjct: 215 KMDVKPDCVALVSVLNAFTCLQDLEQGRSIHASVMKMGLETEPDLLISLNTM---YAKCG 271
Query: 168 DMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLT 227
++ A LFD M N++ WN MISGY+K+G ++ LF EM+ R + ++ S ++
Sbjct: 272 QVATAKILFDKMKSPNLILWNAMISGYAKNGFAKDAIDLFHEMINKDVRPDTISITSAIS 331
Query: 228 ACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVC 287
AC + + R + Y R+ + ++ + +ALID+++KC VE A+ VFD DR++V
Sbjct: 332 ACAQVGSLEQARWMDEYVSRSDYRDDVFISSALIDMFAKCGSVECARSVFDRTLDRDVVV 391
Query: 288 WNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKY 347
W+AMI+G+ +HG+ E I L+ A+ V P+++TF+G++ AC + ++ EG +
Sbjct: 392 WSAMIVGYGLHGQAREAISLYRAMERDGV-----HPNDVTFLGLLIACNHSGMVREGWWF 446
Query: 348 FRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSL 407
F +M D +KI P HY C+ +L A ++A E+++ MP + +W +LLS
Sbjct: 447 FNRMAD-HKINPQQQHYACIIDLLGRAGHLDQAYEVIKCMP-----VQPGVTVWGALLSA 500
Query: 408 CRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMP 467
C+ V + + A+ +DP + Y L N+YA A W+ VA VR MK++ + +
Sbjct: 501 CKKHRHVELGKYAAQQLFSIDPSNTGHYVQLSNLYAAARLWDRVAEVRVRMKEKGLNKDV 560
Query: 468 GCRLVDLKEVVEKLKVGHFWRGGMKEEVNKMMECRQSR 505
GC V+++ +E +VG EE+ + +E +SR
Sbjct: 561 GCSWVEVRGRLEGFRVGDK-SHPRYEEIERQVEWIESR 597
Score = 42.0 bits (97), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 32/128 (25%), Positives = 58/128 (45%), Gaps = 8/128 (6%)
Query: 218 NDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVF 277
+D AS++ + A+ R +H + L+ + L T LI S + A++VF
Sbjct: 20 SDSFYASLIDSSTHKAQL---RQIHARLLVLGLQFSGFLITKLIHASSSYGDITFARQVF 76
Query: 278 DSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVR 337
D + + WNA+I G+ + ++ + +++ + V SPD TF ++ AC
Sbjct: 77 DDLPRPQVFPWNAIIRGYSRNNHFQDALLMYSKMQLARV-----SPDSFTFPHLLKACGG 131
Query: 338 AELLTEGR 345
L GR
Sbjct: 132 LSHLQMGR 139
>gi|5080805|gb|AAD39314.1|AC007258_3 Hypothetical protein [Arabidopsis thaliana]
Length = 615
Score = 227 bits (579), Expect = 9e-57, Method: Compositional matrix adjust.
Identities = 148/499 (29%), Positives = 246/499 (49%), Gaps = 55/499 (11%)
Query: 1 MKQLLQIQAHLITSGLFFNNS--FWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAV 58
M QL Q+ A + + + F +L+ S+ F +Y VF I N +F N +
Sbjct: 38 MSQLKQLHAFTLRTTYPEEPATLFLYGKILQLSSSFSDVNYAFRVFDSIENHSSFMWNTL 97
Query: 59 IKAYSNSCV-PDQGVVFYLQMIKNG-FMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKN 116
I+A ++ ++ + Y +M++ G P+ +TF + +CA G H +K+
Sbjct: 98 IRACAHDVSRKEEAFMLYRKMLERGESSPDKHTFPFVLKACAYIFGFSEGKQVHCQIVKH 157
Query: 117 GVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELF 176
G ++ V N LI++YG G +D AR ++F
Sbjct: 158 GFGGDVYVNNGLIHLYGSCGCLDLAR-------------------------------KVF 186
Query: 177 DIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFN 236
D MPER++VSWN MI + G +L+LFREM +S F + TM SVL+AC +
Sbjct: 187 DEMPERSLVSWNSMIDALVRFGEYDSALQLFREMQRS-FEPDGYTMQSVLSACAGLGSLS 245
Query: 237 EGRSVHGYTVR---TSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMIL 293
G H + +R + ++++ +LI++Y KC + +A++VF M R+L WNAMIL
Sbjct: 246 LGTWAHAFLLRKCDVDVAMDVLVKNSLIEMYCKCGSLRMAEQVFQGMQKRDLASWNAMIL 305
Query: 294 GHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMID 353
G HG+ EE + F +V+ ++ P+ +TF+G++ AC + +GR+YF M+
Sbjct: 306 GFATHGRAEEAMNFFDRMVDKR---ENVRPNSVTFVGLLIACNHRGFVNKGRQYFDMMVR 362
Query: 354 FYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGA 413
Y I+P HY C+ +L A A EA +++ MP M ++++W SLL C +GA
Sbjct: 363 DYCIEPALEHYGCIVDLIARAGYITEAIDMVMSMP-----MKPDAVIWRSLLDACCKKGA 417
Query: 414 -VAMVERLAKSFVDMDPQDFSR-------YQFLLNVYAVAGQWEDVARVRELMKKRRMGR 465
V + E +A++ + + S Y L VYA A +W DV VR+LM + + +
Sbjct: 418 SVELSEEIARNIIGTKEDNESSNGNCSGAYVLLSRVYASASRWNDVGIVRKLMSEHGIRK 477
Query: 466 MPGCRLVDLKEVVEKLKVG 484
PGC +++ + + G
Sbjct: 478 EPGCSSIEINGISHEFFAG 496
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 55/217 (25%), Positives = 96/217 (44%), Gaps = 28/217 (12%)
Query: 219 DKTMASVLTACGRSARFNEGRSVHGYTVRTSLK---PNIILDTALIDLYSKCQKVEVAQR 275
D+ A+VL C ++ + +H +T+RT+ + L ++ L S V A R
Sbjct: 25 DRVHATVLQTCSDMSQL---KQLHAFTLRTTYPEEPATLFLYGKILQLSSSFSDVNYAFR 81
Query: 276 VFDSMADRNLVCWNAMILGHCIH--GKPEEGIKLFTALVNGTVAGGSISPDEITFIGVIC 333
VFDS+ + + WN +I C H + EE L+ ++ G SPD+ TF V+
Sbjct: 82 VFDSIENHSSFMWNTLIRA-CAHDVSRKEEAFMLYRKMLER----GESSPDKHTFPFVLK 136
Query: 334 ACVRAELLTEGRKYFRQMI------DFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKM 387
AC +EG++ Q++ D Y + H LY + A ++ +M
Sbjct: 137 ACAYIFGFSEGKQVHCQIVKHGFGGDVY-VNNGLIH------LYGSCGCLDLARKVFDEM 189
Query: 388 PEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSF 424
PE +S+ S M +L+ + A+ + + +SF
Sbjct: 190 PE-RSLVSWNS-MIDALVRFGEYDSALQLFREMQRSF 224
>gi|356564895|ref|XP_003550682.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g30700-like [Glycine max]
Length = 778
Score = 227 bits (579), Expect = 9e-57, Method: Compositional matrix adjust.
Identities = 131/437 (29%), Positives = 215/437 (49%), Gaps = 41/437 (9%)
Query: 38 DYTVLVFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSC 97
D L+F I P NA+I +S + + V ++ +++ +G +S T V L
Sbjct: 256 DTARLLFGMIRKPDLVSYNALISGFSCNGETECAVKYFRELLVSGQRVSSSTMVGLIPVS 315
Query: 98 AKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWN 157
+ G + G +K+G + V +L +Y +D AR
Sbjct: 316 SPFGHLHLACCIQGFCVKSGTILQPSVSTALTTIYSRLNEIDLAR--------------- 360
Query: 158 SIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRG 217
+LFD E+ V +WN MISGY++SG ++ LF+EMM + F
Sbjct: 361 ----------------QLFDESSEKTVAAWNAMISGYAQSGLTEMAISLFQEMMTTEFTP 404
Query: 218 NDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVF 277
N T+ S+L+AC + + G+SVH +L+ NI + TALID+Y+KC + A ++F
Sbjct: 405 NPVTITSILSACAQLGALSFGKSVHQLIKSKNLEQNIYVSTALIDMYAKCGNISEASQLF 464
Query: 278 DSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVR 337
D +++N V WN MI G+ +HG +E +KLF +++ P +TF+ V+ AC
Sbjct: 465 DLTSEKNTVTWNTMIFGYGLHGYGDEALKLFNEMLH-----LGFQPSSVTFLSVLYACSH 519
Query: 338 AELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFE 397
A L+ EG + F M++ Y+I+P HY CM ++ A E+A E +RKMP +
Sbjct: 520 AGLVREGDEIFHAMVNKYRIEPLAEHYACMVDILGRAGQLEKALEFIRKMPVEPG----- 574
Query: 398 SIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVREL 457
+W +LL C + ++ ++DP + Y L N+Y+V + A VRE
Sbjct: 575 PAVWGTLLGACMIHKDTNLARVASERLFELDPGNVGYYVLLSNIYSVERNFPKAASVREA 634
Query: 458 MKKRRMGRMPGCRLVDL 474
+KKR + + PGC L+++
Sbjct: 635 VKKRNLSKTPGCTLIEV 651
Score = 123 bits (309), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 118/496 (23%), Positives = 209/496 (42%), Gaps = 80/496 (16%)
Query: 7 IQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSNSC 66
+ AH + G F +N F L+ F Y VF + + T N +I +C
Sbjct: 125 LHAHAVVDG-FDSNLFVASALVDLYCKFSRVAYARKVFDKMPDRDTVLWNTMITGLVRNC 183
Query: 67 VPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMN 126
D V + M+ G +S T ++ + A+ V+ G LALK G F+ V+
Sbjct: 184 CYDDSVQVFKDMVAQGVRLDSTTVATVLPAVAEMQEVKVGMGIQCLALKLGFHFDDYVLT 243
Query: 127 SLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVS 186
LI+++ +D AR +F G +R D+ VS
Sbjct: 244 GLISVFSKCEDVDTARLLF----------------GMIRKPDL---------------VS 272
Query: 187 WNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTV 246
+N +ISG+S +G C++K FRE++ SG R + TM ++ + + G+ V
Sbjct: 273 YNALISGFSCNGETECAVKYFRELLVSGQRVSSSTMVGLIPVSSPFGHLHLACCIQGFCV 332
Query: 247 R--TSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEG 304
+ T L+P++ TAL +YS+ ++++A+++FD +++ + WNAMI G+ G E
Sbjct: 333 KSGTILQPSV--STALTTIYSRLNEIDLARQLFDESSEKTVAAWNAMISGYAQSGLTEMA 390
Query: 305 IKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHY 364
I LF ++ +P+ +T ++ AC + L+ G K Q+I ++ N
Sbjct: 391 ISLFQEMMT-----TEFTPNPVTITSILSACAQLGALSFG-KSVHQLIKSKNLEQNIYVS 444
Query: 365 WCMANLYAGAELTEEAEEILRKMPEDN----DNMSF------------------------ 396
+ ++YA EA ++ E N + M F
Sbjct: 445 TALIDMYAKCGNISEASQLFDLTSEKNTVTWNTMIFGYGLHGYGDEALKLFNEMLHLGFQ 504
Query: 397 -ESIMWVSLLSLCRFQGAVAMVERLAKSFVD---MDPQDFSRYQFLLNVYAVAGQWEDVA 452
S+ ++S+L C G V + + + V+ ++P Y ++++ AGQ E
Sbjct: 505 PSSVTFLSVLYACSHAGLVREGDEIFHAMVNKYRIEPLA-EHYACMVDILGRAGQLE--- 560
Query: 453 RVRELMKKRRMGRMPG 468
+ L R+M PG
Sbjct: 561 --KALEFIRKMPVEPG 574
Score = 111 bits (277), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 118/497 (23%), Positives = 213/497 (42%), Gaps = 87/497 (17%)
Query: 3 QLLQIQAHLITSGLFFNNSFWTINLLKHSA-DFGSPDYTVLVFKCINNPGTFCVNAVIKA 61
L + A LI +G + + T+ L D G+ + +F + P F N +IK
Sbjct: 23 HLAETHAQLIRNG--YQHDLATVTKLTQKLFDVGATRHARALFFSVPKPDIFLFNVLIKG 80
Query: 62 YSNSCVPD-QGVVFYLQMIKNGFM-PNSYTFVSLFGSCAKTGCVERGGMC-HGLALKNGV 118
+S S PD + FY ++KN + P+++T+ + + GMC H A+ +G
Sbjct: 81 FSFS--PDASSISFYTHLLKNTTLSPDNFTYAFAISASPD----DNLGMCLHAHAVVDGF 134
Query: 119 DFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDI 178
D L V ++L+++Y F + AR ++FD
Sbjct: 135 DSNLFVASALVDLYCKFSRVAYAR-------------------------------KVFDK 163
Query: 179 MPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEG 238
MP+R+ V WN MI+G ++ S+++F++M+ G R + T+A+VL A G
Sbjct: 164 MPDRDTVLWNTMITGLVRNCCYDDSVQVFKDMVAQGVRLDSTTVATVLPAVAEMQEVKVG 223
Query: 239 RSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIH 298
+ ++ + + T LI ++SKC+ V+ A+ +F + +LV +NA+I G +
Sbjct: 224 MGIQCLALKLGFHFDDYVLTGLISVFSKCEDVDTARLLFGMIRKPDLVSYNALISGFSCN 283
Query: 299 GKPEEGIKLFTALVNGTVAGGSISPDEITFIGVI-----------CACVRAELLTEGR-- 345
G+ E +K F L+ V+G +S T +G+I C++ + G
Sbjct: 284 GETECAVKYFRELL---VSGQRVSSS--TMVGLIPVSSPFGHLHLACCIQGFCVKSGTIL 338
Query: 346 ------------------KYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKM 387
RQ+ D K A + M + YA + LTE A + ++M
Sbjct: 339 QPSVSTALTTIYSRLNEIDLARQLFDESSEK-TVAAWNAMISGYAQSGLTEMAISLFQEM 397
Query: 388 PEDNDNMSFESIMWVSLLSLCRFQGAVAM---VERLAKSFVDMDPQDFSRYQFLLNVYAV 444
+ + S+LS C GA++ V +L KS Q+ L+++YA
Sbjct: 398 M--TTEFTPNPVTITSILSACAQLGALSFGKSVHQLIKS--KNLEQNIYVSTALIDMYAK 453
Query: 445 AGQWEDVARVRELMKKR 461
G + +++ +L ++
Sbjct: 454 CGNISEASQLFDLTSEK 470
Score = 41.2 bits (95), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 49/222 (22%), Positives = 88/222 (39%), Gaps = 30/222 (13%)
Query: 10 HLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSNSCVPD 69
LI S N + + L+ A G+ +F + T N +I Y D
Sbjct: 430 QLIKSKNLEQNIYVSTALIDMYAKCGNISEASQLFDLTSEKNTVTWNTMIFGYGLHGYGD 489
Query: 70 QGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGG-MCHGLALKNGVDFELPVMNSL 128
+ + + +M+ GF P+S TF+S+ +C+ G V G + H + K ++ +
Sbjct: 490 EALKLFNEMLHLGFQPSSVTFLSVLYACSHAGLVREGDEIFHAMVNKYRIEPLAEHYACM 549
Query: 129 INMYGCFG----AMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMS----AAHELFDIMP 180
+++ G G A++ R M V+ P W +++ + D + A+ LF++ P
Sbjct: 550 VDILGRAGQLEKALEFIRKMPVEPGPA---VWGTLLGACMIHKDTNLARVASERLFELDP 606
Query: 181 ---------------ERN---VVSWNIMISGYSKSGNPGCSL 204
ERN S + + S PGC+L
Sbjct: 607 GNVGYYVLLSNIYSVERNFPKAASVREAVKKRNLSKTPGCTL 648
>gi|87241511|gb|ABD33369.1| Tetratricopeptide-like helical [Medicago truncatula]
Length = 609
Score = 227 bits (579), Expect = 9e-57, Method: Compositional matrix adjust.
Identities = 128/433 (29%), Positives = 218/433 (50%), Gaps = 40/433 (9%)
Query: 43 VFKCINNPGTFCVNAVIKAYSNSCVPDQGV-VFYLQMIKNGFMPNSYTFVSLFGSCAKTG 101
VF I N+++ Y+ + V VF ++GF P+ + VS+ G+C + G
Sbjct: 174 VFDEITEKDLVSWNSLLSGYAKLGFAREAVEVFGRLREESGFEPDEMSLVSVLGACGELG 233
Query: 102 CVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVS 161
+E G G ++ G+ + ++LI+MY
Sbjct: 234 DLELGRWVEGFVVERGMKVNSYIGSALISMYS---------------------------- 265
Query: 162 GHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKT 221
+ G++ ++ +FD MP R+ ++WN IS Y+++G ++ LF M ++G N T
Sbjct: 266 ---KCGELVSSRRIFDGMPSRDFITWNAAISAYAQNGMADEAISLFHSMKENGVDPNKVT 322
Query: 222 MASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMA 281
+ +VL+AC + G+ + Y L+ +I + TALID+Y+KC +E AQRVF+ M
Sbjct: 323 LTAVLSACASIGALDLGKQMDEYATHRGLQHDIFVATALIDMYAKCGSLESAQRVFNDMP 382
Query: 282 DRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELL 341
+N WNAMI HGK +E + LF + + GGS P++ITF+ ++ ACV A L+
Sbjct: 383 RKNDASWNAMISALASHGKAKEALSLFERMSD---EGGSARPNDITFVSLLSACVHAGLV 439
Query: 342 TEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMW 401
EG + F M + + P HY CM +L + A EA +++ KMPE DN++
Sbjct: 440 DEGYRLFDMMSTLFGLVPKIEHYSCMVDLLSRAGHLYEAWDVIEKMPEKPDNVTLG---- 495
Query: 402 VSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKR 461
+L S C+ + V + ER+ + +++DP + Y +Y W+D AR+R LM++
Sbjct: 496 -ALHSACQRKKNVDIGERVIQMLLELDPSNSGNYIISSKIYENLNMWDDAARMRALMREN 554
Query: 462 RMGRMPGCRLVDL 474
+ + PGC +++
Sbjct: 555 GVTKTPGCSWIEV 567
Score = 155 bits (391), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 122/465 (26%), Positives = 212/465 (45%), Gaps = 58/465 (12%)
Query: 2 KQLLQIQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCIN-NPGTFCVNAVIK 60
K L QI + N +LL S Y+ L+F I +P + N +++
Sbjct: 35 KTLQQIHTQFTIHSIHKPN-----HLLSQSISLKDFTYSTLIFSHITPHPNDYAFNIMLR 89
Query: 61 AYSNSCVPDQGVVFYL--QMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGV 118
A + + D + +L QM PN++TF +F +CA + + H K G+
Sbjct: 90 A-TTTTWHDYPLTLHLYHQMKTLNISPNNFTFPFVFLACANLEEIRMARLAHCEVFKLGL 148
Query: 119 DFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDI 178
D + +NS++ MY R G+ A ++FD
Sbjct: 149 DNDHHTVNSMVTMY-------------------------------FRCGENGVARKVFDE 177
Query: 179 MPERNVVSWNIMISGYSKSGNPGCSLKLF-REMMKSGFRGNDKTMASVLTACGRSARFNE 237
+ E+++VSWN ++SGY+K G ++++F R +SGF ++ ++ SVL ACG
Sbjct: 178 ITEKDLVSWNSLLSGYAKLGFAREAVEVFGRLREESGFEPDEMSLVSVLGACGELGDLEL 237
Query: 238 GRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCI 297
GR V G+ V +K N + +ALI +YSKC ++ ++R+FD M R+ + WNA I +
Sbjct: 238 GRWVEGFVVERGMKVNSYIGSALISMYSKCGELVSSRRIFDGMPSRDFITWNAAISAYAQ 297
Query: 298 HGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKI 357
+G +E I LF ++ V P+++T V+ AC L G++ +D Y
Sbjct: 298 NGMADEAISLFHSMKENGV-----DPNKVTLTAVLSACASIGALDLGKQ-----MDEYAT 347
Query: 358 KPNFAHYWCMA----NLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGA 413
H +A ++YA E A+ + MP ND + + M +L S + + A
Sbjct: 348 HRGLQHDIFVATALIDMYAKCGSLESAQRVFNDMPRKND--ASWNAMISALASHGKAKEA 405
Query: 414 VAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELM 458
+++ ER++ P D + + LL+ AG ++ R+ ++M
Sbjct: 406 LSLFERMSDEGGSARPNDIT-FVSLLSACVHAGLVDEGYRLFDMM 449
>gi|357449413|ref|XP_003594983.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355484031|gb|AES65234.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 702
Score = 227 bits (579), Expect = 9e-57, Method: Compositional matrix adjust.
Identities = 128/433 (29%), Positives = 218/433 (50%), Gaps = 40/433 (9%)
Query: 43 VFKCINNPGTFCVNAVIKAYSNSCVPDQGV-VFYLQMIKNGFMPNSYTFVSLFGSCAKTG 101
VF I N+++ Y+ + V VF ++GF P+ + VS+ G+C + G
Sbjct: 174 VFDEITEKDLVSWNSLLSGYAKLGFAREAVEVFGRLREESGFEPDEMSLVSVLGACGELG 233
Query: 102 CVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVS 161
+E G G ++ G+ + ++LI+MY
Sbjct: 234 DLELGRWVEGFVVERGMKVNSYIGSALISMYS---------------------------- 265
Query: 162 GHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKT 221
+ G++ ++ +FD MP R+ ++WN IS Y+++G ++ LF M ++G N T
Sbjct: 266 ---KCGELVSSRRIFDGMPSRDFITWNAAISAYAQNGMADEAISLFHSMKENGVDPNKVT 322
Query: 222 MASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMA 281
+ +VL+AC + G+ + Y L+ +I + TALID+Y+KC +E AQRVF+ M
Sbjct: 323 LTAVLSACASIGALDLGKQMDEYATHRGLQHDIFVATALIDMYAKCGSLESAQRVFNDMP 382
Query: 282 DRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELL 341
+N WNAMI HGK +E + LF + + GGS P++ITF+ ++ ACV A L+
Sbjct: 383 RKNDASWNAMISALASHGKAKEALSLFERMSD---EGGSARPNDITFVSLLSACVHAGLV 439
Query: 342 TEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMW 401
EG + F M + + P HY CM +L + A EA +++ KMPE DN++
Sbjct: 440 DEGYRLFDMMSTLFGLVPKIEHYSCMVDLLSRAGHLYEAWDVIEKMPEKPDNVTLG---- 495
Query: 402 VSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKR 461
+L S C+ + V + ER+ + +++DP + Y +Y W+D AR+R LM++
Sbjct: 496 -ALHSACQRKKNVDIGERVIQMLLELDPSNSGNYIISSKIYENLNMWDDAARMRALMREN 554
Query: 462 RMGRMPGCRLVDL 474
+ + PGC +++
Sbjct: 555 GVTKTPGCSWIEV 567
Score = 155 bits (391), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 122/465 (26%), Positives = 212/465 (45%), Gaps = 58/465 (12%)
Query: 2 KQLLQIQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCIN-NPGTFCVNAVIK 60
K L QI + N +LL S Y+ L+F I +P + N +++
Sbjct: 35 KTLQQIHTQFTIHSIHKPN-----HLLSQSISLKDFTYSTLIFSHITPHPNDYAFNIMLR 89
Query: 61 AYSNSCVPDQGVVFYL--QMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGV 118
A + + D + +L QM PN++TF +F +CA + + H K G+
Sbjct: 90 A-TTTTWHDYPLTLHLYHQMKTLNISPNNFTFPFVFLACANLEEIRMARLAHCEVFKLGL 148
Query: 119 DFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDI 178
D + +NS++ MY R G+ A ++FD
Sbjct: 149 DNDHHTVNSMVTMY-------------------------------FRCGENGVARKVFDE 177
Query: 179 MPERNVVSWNIMISGYSKSGNPGCSLKLF-REMMKSGFRGNDKTMASVLTACGRSARFNE 237
+ E+++VSWN ++SGY+K G ++++F R +SGF ++ ++ SVL ACG
Sbjct: 178 ITEKDLVSWNSLLSGYAKLGFAREAVEVFGRLREESGFEPDEMSLVSVLGACGELGDLEL 237
Query: 238 GRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCI 297
GR V G+ V +K N + +ALI +YSKC ++ ++R+FD M R+ + WNA I +
Sbjct: 238 GRWVEGFVVERGMKVNSYIGSALISMYSKCGELVSSRRIFDGMPSRDFITWNAAISAYAQ 297
Query: 298 HGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKI 357
+G +E I LF ++ V P+++T V+ AC L G++ +D Y
Sbjct: 298 NGMADEAISLFHSMKENGV-----DPNKVTLTAVLSACASIGALDLGKQ-----MDEYAT 347
Query: 358 KPNFAHYWCMA----NLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGA 413
H +A ++YA E A+ + MP ND + + M +L S + + A
Sbjct: 348 HRGLQHDIFVATALIDMYAKCGSLESAQRVFNDMPRKND--ASWNAMISALASHGKAKEA 405
Query: 414 VAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELM 458
+++ ER++ P D + + LL+ AG ++ R+ ++M
Sbjct: 406 LSLFERMSDEGGSARPNDIT-FVSLLSACVHAGLVDEGYRLFDMM 449
>gi|110737061|dbj|BAF00484.1| hypothetical protein [Arabidopsis thaliana]
Length = 629
Score = 227 bits (579), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 148/499 (29%), Positives = 246/499 (49%), Gaps = 55/499 (11%)
Query: 1 MKQLLQIQAHLITSGLFFNNS--FWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAV 58
M QL Q+ A + + + F +L+ S+ F +Y VF I N +F N +
Sbjct: 52 MSQLKQLHAFTLRTTYPEEPATLFLYGKILQLSSSFSDVNYAFRVFDSIENHSSFMWNTL 111
Query: 59 IKAYSNSCV-PDQGVVFYLQMIKNG-FMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKN 116
I+A ++ ++ + Y +M++ G P+ +TF + +CA G H +K+
Sbjct: 112 IRACAHDVSRKEEAFMLYRKMLERGESSPDKHTFPFVLKACAYIFGFSEGKQVHCQIVKH 171
Query: 117 GVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELF 176
G ++ V N LI++YG G +D AR ++F
Sbjct: 172 GFGGDVYVNNGLIHLYGSCGCLDLAR-------------------------------KVF 200
Query: 177 DIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFN 236
D MPER++VSWN MI + G +L+LFREM +S F + TM SVL+AC +
Sbjct: 201 DEMPERSLVSWNSMIDALVRFGEYDSALQLFREMQRS-FEPDGYTMQSVLSACAGLGSLS 259
Query: 237 EGRSVHGYTVR---TSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMIL 293
G H + +R + ++++ +LI++Y KC + +A++VF M R+L WNAMIL
Sbjct: 260 LGTWAHAFLLRKCDVDVAMDVLVKNSLIEMYCKCGSLRMAEQVFQGMQKRDLASWNAMIL 319
Query: 294 GHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMID 353
G HG+ EE + F +V+ ++ P+ +TF+G++ AC + +GR+YF M+
Sbjct: 320 GFATHGRAEEAMNFFDRMVDKR---ENVRPNSVTFVGLLIACNHRGFVNKGRQYFDMMVR 376
Query: 354 FYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGA 413
Y I+P HY C+ +L A A EA +++ MP M ++++W SLL C +GA
Sbjct: 377 DYCIEPALEHYGCIVDLIARAGYITEAIDMVMSMP-----MKPDAVIWRSLLDACCKKGA 431
Query: 414 -VAMVERLAKSFVDMDPQDFSR-------YQFLLNVYAVAGQWEDVARVRELMKKRRMGR 465
V + E +A++ + + S Y L VYA A +W DV VR+LM + + +
Sbjct: 432 SVELSEEIARNIIGTKEDNESSNGNCSGAYVLLSRVYASASRWNDVGIVRKLMSEHGIRK 491
Query: 466 MPGCRLVDLKEVVEKLKVG 484
PGC +++ + + G
Sbjct: 492 EPGCSSIEINGISHEFFAG 510
>gi|356519887|ref|XP_003528600.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
chloroplastic-like [Glycine max]
Length = 813
Score = 227 bits (579), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 142/476 (29%), Positives = 235/476 (49%), Gaps = 54/476 (11%)
Query: 12 ITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSNSCVPDQG 71
I S +F +NS L+ A GS +F + NA+I ++ + + +
Sbjct: 373 IESDVFISNS-----LIDMYAKSGSSRIASTIFNKMGVRNIVSWNAMIANFARNRLEYEA 427
Query: 72 VVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINM 131
V QM G PN+ TF ++ +CA+ G + G H ++ G +L V N+L +M
Sbjct: 428 VELVRQMQAKGETPNNVTFTNVLPACARLGFLNVGKEIHARIIRVGSSLDLFVSNALTDM 487
Query: 132 YGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMI 191
Y G ++ A+N+F +S RD VS+NI+I
Sbjct: 488 YSKCGCLNLAQNVF-NISVRD-------------------------------EVSYNILI 515
Query: 192 SGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLK 251
GYS++ + SL+LF EM G R + + V++AC A +G+ +HG VR
Sbjct: 516 IGYSRTNDSLESLRLFSEMRLLGMRPDIVSFMGVVSACANLAFIRQGKEIHGLLVRKLFH 575
Query: 252 PNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTAL 311
++ + +L+DLY++C ++++A +VF + ++++ WN MILG+ + G+ + I LF A+
Sbjct: 576 THLFVANSLLDLYTRCGRIDLATKVFYCIQNKDVASWNTMILGYGMRGELDTAINLFEAM 635
Query: 312 VNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLY 371
+ D ++F+ V+ AC L+ +GRKYF+ M D I+P HY CM +L
Sbjct: 636 KE-----DGVEYDSVSFVAVLSACSHGGLIEKGRKYFKMMCDL-NIEPTHTHYACMVDLL 689
Query: 372 AGAELTEEAEEILRKM---PEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMD 428
A L EEA +++R + P+ N +W +LL CR G + + A+ ++
Sbjct: 690 GRAGLMEEAADLIRGLSIIPDTN--------IWGALLGACRIHGNIELGLWAAEHLFELK 741
Query: 429 PQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLKEVVEKLKVG 484
PQ Y L N+YA A +W++ +VRELMK R + PGC V + ++V VG
Sbjct: 742 PQHCGYYILLSNMYAEAERWDEANKVRELMKSRGAKKNPGCSWVQVGDLVHAFLVG 797
Score = 123 bits (309), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 86/300 (28%), Positives = 144/300 (48%), Gaps = 39/300 (13%)
Query: 56 NAVIKAYSNSCVPDQGVVFYLQMI--KNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLA 113
N VI S ++ + F+ M+ K G P+ T VS+ CA+T + H A
Sbjct: 207 NTVIGLCSLHGFYEEALGFFRVMVAAKPGIQPDLVTVVSVLPVCAETEDKVMARIVHCYA 266
Query: 114 LKNGV-DFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAA 172
LK G+ + V N+L+++YG + G A+
Sbjct: 267 LKVGLLGGHVKVGNALVDVYG-------------------------------KCGSEKAS 295
Query: 173 HELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRS 232
++FD + ERNV+SWN +I+ +S G +L +FR M+ G R N T++S+L G
Sbjct: 296 KKVFDEIDERNVISWNAIITSFSFRGKYMDALDVFRLMIDEGMRPNSVTISSMLPVLGEL 355
Query: 233 ARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMI 292
F G VHG++++ +++ ++ + +LID+Y+K +A +F+ M RN+V WNAMI
Sbjct: 356 GLFKLGMEVHGFSLKMAIESDVFISNSLIDMYAKSGSSRIASTIFNKMGVRNIVSWNAMI 415
Query: 293 LGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMI 352
+ E ++ LV A G +P+ +TF V+ AC R L G++ ++I
Sbjct: 416 ANFARNRLEYEAVE----LVRQMQAKGE-TPNNVTFTNVLPACARLGFLNVGKEIHARII 470
Score = 115 bits (288), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 90/327 (27%), Positives = 152/327 (46%), Gaps = 37/327 (11%)
Query: 1 MKQLLQIQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFK--CINNPGTFCVNAV 58
+ Q Q+ A+ + G + +L+ A FG P ++L+F+ + F N +
Sbjct: 50 LSQTKQVHAYSLLHGFLPRSVSLCASLILQYASFGHPSNSLLLFQHSVAYSRSAFLWNTL 109
Query: 59 IKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGV 118
I+A S + V D G Y M++ G P+ T+ + C+ V +G HG+A K G
Sbjct: 110 IRANSIAGVFD-GFGTYNTMVRAGVKPDECTYPFVLKVCSDFVEVRKGREVHGVAFKLGF 168
Query: 119 DFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDI 178
D ++ V N+L+ YG G GD A ++FD
Sbjct: 169 DGDVFVGNTLLAFYGNCGLF----------------------------GD---AMKVFDE 197
Query: 179 MPERNVVSWNIMISGYSKSGNPGCSLKLFREMM--KSGFRGNDKTMASVLTACGRSARFN 236
MPER+ VSWN +I S G +L FR M+ K G + + T+ SVL C +
Sbjct: 198 MPERDKVSWNTVIGLCSLHGFYEEALGFFRVMVAAKPGIQPDLVTVVSVLPVCAETEDKV 257
Query: 237 EGRSVHGYTVRTSL-KPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGH 295
R VH Y ++ L ++ + AL+D+Y KC + +++VFD + +RN++ WNA+I
Sbjct: 258 MARIVHCYALKVGLLGGHVKVGNALVDVYGKCGSEKASKKVFDEIDERNVISWNAIITSF 317
Query: 296 CIHGKPEEGIKLFTALVNGTVAGGSIS 322
GK + + +F +++ + S++
Sbjct: 318 SFRGKYMDALDVFRLMIDEGMRPNSVT 344
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 51/192 (26%), Positives = 83/192 (43%), Gaps = 6/192 (3%)
Query: 150 PRDLISWNSIVSGHVRSGDMSAAHELFD--IMPERNVVSWNIMISGYSKSGNPGCSLKLF 207
PR + S++ + G S + LF + R+ WN +I S +G +
Sbjct: 67 PRSVSLCASLILQYASFGHPSNSLLLFQHSVAYSRSAFLWNTLIRANSIAGVFD-GFGTY 125
Query: 208 REMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKC 267
M+++G + ++ T VL C +GR VHG + ++ + L+ Y C
Sbjct: 126 NTMVRAGVKPDECTYPFVLKVCSDFVEVRKGREVHGVAFKLGFDGDVFVGNTLLAFYGNC 185
Query: 268 QKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEIT 327
A +VFD M +R+ V WN +I +HG EE + F +V A I PD +T
Sbjct: 186 GLFGDAMKVFDEMPERDKVSWNTVIGLCSLHGFYEEALGFFRVMV---AAKPGIQPDLVT 242
Query: 328 FIGVICACVRAE 339
+ V+ C E
Sbjct: 243 VVSVLPVCAETE 254
Score = 48.5 bits (114), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 50/216 (23%), Positives = 90/216 (41%), Gaps = 11/216 (5%)
Query: 11 LITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSNSCVPDQ 70
L+ LF + F +LL G D VF CI N N +I Y D
Sbjct: 568 LLVRKLFHTHLFVANSLLDLYTRCGRIDLATKVFYCIQNKDVASWNTMILGYGMRGELDT 627
Query: 71 GVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLIN 130
+ + M ++G +S +FV++ +C+ G +E+G + ++ +++
Sbjct: 628 AINLFEAMKEDGVEYDSVSFVAVLSACSHGGLIEKGRKYFKMMCDLNIEPTHTHYACMVD 687
Query: 131 MYGCFGAMDCARNMFVQMS-PRDLISWNSI-----VSGHVRSGDMSAAHELFDIMPERNV 184
+ G G M+ A ++ +S D W ++ + G++ G + AA LF++ P+
Sbjct: 688 LLGRAGLMEEAADLIRGLSIIPDTNIWGALLGACRIHGNIELG-LWAAEHLFELKPQH-- 744
Query: 185 VSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDK 220
+ I++S RE+MKS RG K
Sbjct: 745 CGYYILLSNMYAEAERWDEANKVRELMKS--RGAKK 778
>gi|125525262|gb|EAY73376.1| hypothetical protein OsI_01257 [Oryza sativa Indica Group]
Length = 499
Score = 227 bits (579), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 127/392 (32%), Positives = 205/392 (52%), Gaps = 15/392 (3%)
Query: 110 HGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSP-RDLISWNSIVSGHVRSGD 168
H L ++ G + SL+ Y G++ AR +F + + D++SWN ++ G+V+SGD
Sbjct: 94 HSLLVRAGHAADPHASASLVQAYCSCGSVASARRVFDETAAYADVVSWNVMIDGYVKSGD 153
Query: 169 MSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTA 228
++ A ELFD+MP RNVVSW ++I Y++ P ++++FR M G + + SVL+A
Sbjct: 154 LARARELFDVMPGRNVVSWTMVIGAYAQMKQPEEAIEVFRRMQVEGIEPDGVALLSVLSA 213
Query: 229 CGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCW 288
CG + G VH + +R L I L A+ID+Y KC V+ A VF+ M +++V W
Sbjct: 214 CGDLGVVDLGEWVHRFVLRRGLCQEIPLMNAIIDMYVKCGSVKKALEVFEGMEQKSIVTW 273
Query: 289 NAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYF 348
MI G +HG E ++LF + V SP++ITF+ V+ C L GR YF
Sbjct: 274 TTMIAGFALHGLGSEAVELFRRMEKENV-----SPNDITFLAVLSVCSHVGLTDLGRWYF 328
Query: 349 RQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLC 408
+ M+ YKIKP HY CM +L A EA +++ MP + +W +LL+
Sbjct: 329 KTMVSQYKIKPRVEHYGCMIDLLGRAGCLMEARGLIQDMP-----FKANAAIWGALLAAA 383
Query: 409 RFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPG 468
R G + E+ ++++P + Y L N+YA +W+ V +R M+ R + +PG
Sbjct: 384 RTHGDTELGEQALLHLIELEPHNSGNYILLSNIYAEQERWDAVRELRISMRDRGLRNVPG 443
Query: 469 CRLVDLKEVVEKLKVGHFWRGGMKEEVNKMME 500
+D+ +V + R G ++K+ E
Sbjct: 444 ASSIDVDGMVHEFTS----RDGSHPSLHKIRE 471
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 64/268 (23%), Positives = 112/268 (41%), Gaps = 35/268 (13%)
Query: 50 PGTFCVN--AVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGG 107
PG V+ VI AY+ P++ + + +M G P+ +S+ +C G V+ G
Sbjct: 165 PGRNVVSWTMVIGAYAQMKQPEEAIEVFRRMQVEGIEPDGVALLSVLSACGDLGVVDLGE 224
Query: 108 MCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSG 167
H L+ G+ E+P+MN++I+MY G++ A +F M + +++W ++++G G
Sbjct: 225 WVHRFVLRRGLCQEIPLMNAIIDMYVKCGSVKKALEVFEGMEQKSIVTWTTMIAGFALHG 284
Query: 168 DMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLT 227
S A ++LFR M K ND T +VL+
Sbjct: 285 LGSEA-------------------------------VELFRRMEKENVSPNDITFLAVLS 313
Query: 228 ACGRSARFNEGRSVHGYTV-RTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADR-NL 285
C + GR V + +KP + +IDL + + A+ + M + N
Sbjct: 314 VCSHVGLTDLGRWYFKTMVSQYKIKPRVEHYGCMIDLLGRAGCLMEARGLIQDMPFKANA 373
Query: 286 VCWNAMILGHCIHGKPEEGIKLFTALVN 313
W A++ HG E G + L+
Sbjct: 374 AIWGALLAAARTHGDTELGEQALLHLIE 401
>gi|356511263|ref|XP_003524346.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g02750-like [Glycine max]
Length = 763
Score = 227 bits (579), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 121/369 (32%), Positives = 199/369 (53%), Gaps = 15/369 (4%)
Query: 121 ELPV-----MNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHEL 175
E+PV N+++ Y + M A +F M R++ SWN++++G+ ++G ++ A +L
Sbjct: 288 EMPVKNEISYNAMLAGYVQYKKMVIAGELFEAMPCRNISSWNTMITGYGQNGGIAQARKL 347
Query: 176 FDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARF 235
FD+MP+R+ VSW +ISGY+++G+ +L +F EM + G N T + L+ C A
Sbjct: 348 FDMMPQRDCVSWAAIISGYAQNGHYEEALNMFVEMKRDGESSNRSTFSCALSTCADIAAL 407
Query: 236 NEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGH 295
G+ VHG V+ + + AL+ +Y KC + A VF+ + ++++V WN MI G+
Sbjct: 408 ELGKQVHGQVVKAGFETGCFVGNALLGMYFKCGSTDEANDVFEGIEEKDVVSWNTMIAGY 467
Query: 296 CIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFY 355
HG + + LF ++ V PDEIT +GV+ AC + L+ G +YF M Y
Sbjct: 468 ARHGFGRQALVLFESMKKAGV-----KPDEITMVGVLSACSHSGLIDRGTEYFYSMDRDY 522
Query: 356 KIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVA 415
+KP HY CM +L A EEAE ++R MP D S W +LL R G
Sbjct: 523 NVKPTSKHYTCMIDLLGRAGRLEEAENLMRNMPFDPGAAS-----WGALLGASRIHGNTE 577
Query: 416 MVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLK 475
+ E+ A+ M+PQ+ Y L N+YA +G+W DV ++R M++ + ++ G V+++
Sbjct: 578 LGEKAAEMVFKMEPQNSGMYVLLSNLYAASGRWVDVGKMRSKMREAGVQKVTGYSWVEVQ 637
Query: 476 EVVEKLKVG 484
+ VG
Sbjct: 638 NKIHTFSVG 646
Score = 115 bits (288), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 93/336 (27%), Positives = 160/336 (47%), Gaps = 33/336 (9%)
Query: 126 NSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVV 185
N++I+ Y AR++F +M RDL SWN +++G+VR+ + AH+LFD+MP+++VV
Sbjct: 81 NAMISGYLRNAKFSLARDLFDKMPERDLFSWNVMLTGYVRNRRLGEAHKLFDLMPKKDVV 140
Query: 186 SWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYT 245
SWN M+SGY+++G + ++F +M N + +L A + R E R +
Sbjct: 141 SWNAMLSGYAQNGFVDEAREVFNKMPHR----NSISWNGLLAAYVHNGRLKEARRL---- 192
Query: 246 VRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGI 305
+ +I L+ Y K + A+++FD M R+++ WN MI G+ G +
Sbjct: 193 FESQSNWELISWNCLMGGYVKRNMLGDARQLFDRMPVRDVISWNTMISGYAQVGDLSQAK 252
Query: 306 KLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYW 365
+LF S D T+ ++ V+ ++ E RKYF +M +K N Y
Sbjct: 253 RLFNE---------SPIRDVFTWTAMVSGYVQNGMVDEARKYFDEM----PVK-NEISYN 298
Query: 366 CMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFV 425
M Y + A E+ MP N + W ++++ G +A A+
Sbjct: 299 AMLAGYVQYKKMVIAGELFEAMPCRNIS------SWNTMITGYGQNGGIAQ----ARKLF 348
Query: 426 DMDPQ-DFSRYQFLLNVYAVAGQWEDVARVRELMKK 460
DM PQ D + +++ YA G +E+ + MK+
Sbjct: 349 DMMPQRDCVSWAAIISGYAQNGHYEEALNMFVEMKR 384
Score = 94.7 bits (234), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 69/261 (26%), Positives = 116/261 (44%), Gaps = 35/261 (13%)
Query: 50 PGTFCVN--AVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGG 107
P CV+ A+I Y+ + ++ + +++M ++G N TF +CA +E G
Sbjct: 352 PQRDCVSWAAIISGYAQNGHYEEALNMFVEMKRDGESSNRSTFSCALSTCADIAALELGK 411
Query: 108 MCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSG 167
HG +K G + V N+L+ MY G+ D A ++F + +D++SWN++++G+ R G
Sbjct: 412 QVHGQVVKAGFETGCFVGNALLGMYFKCGSTDEANDVFEGIEEKDVVSWNTMIAGYARHG 471
Query: 168 DMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLT 227
A L LF M K+G + ++ TM VL+
Sbjct: 472 FGRQA-------------------------------LVLFESMKKAGVKPDEITMVGVLS 500
Query: 228 ACGRSARFNEGRSVHGYTVRT-SLKPNIILDTALIDLYSKCQKVEVAQRVFDSMA-DRNL 285
AC S + G R ++KP T +IDL + ++E A+ + +M D
Sbjct: 501 ACSHSGLIDRGTEYFYSMDRDYNVKPTSKHYTCMIDLLGRAGRLEEAENLMRNMPFDPGA 560
Query: 286 VCWNAMILGHCIHGKPEEGIK 306
W A++ IHG E G K
Sbjct: 561 ASWGALLGASRIHGNTELGEK 581
Score = 89.7 bits (221), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 73/297 (24%), Positives = 133/297 (44%), Gaps = 21/297 (7%)
Query: 56 NAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALK 115
NA++ Y+ + D+ + +M NS ++ L + G ++ +
Sbjct: 143 NAMLSGYAQNGFVDEAREVFNKMPHR----NSISWNGLLAAYVHNGRLKEARRL----FE 194
Query: 116 NGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHEL 175
+ ++EL N L+ Y + AR +F +M RD+ISWN+++SG+ + GD+S A L
Sbjct: 195 SQSNWELISWNCLMGGYVKRNMLGDARQLFDRMPVRDVISWNTMISGYAQVGDLSQAKRL 254
Query: 176 FDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARF 235
F+ P R+V +W M+SGY ++G + K F EM N+ + ++L + +
Sbjct: 255 FNESPIRDVFTWTAMVSGYVQNGMVDEARKYFDEMPVK----NEISYNAMLAGYVQYKKM 310
Query: 236 NEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGH 295
+ G NI +I Y + + A+++FD M R+ V W A+I G+
Sbjct: 311 ----VIAGELFEAMPCRNISSWNTMITGYGQNGGIAQARKLFDMMPQRDCVSWAAIISGY 366
Query: 296 CIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMI 352
+G EE + +F + S + TF + C L G++ Q++
Sbjct: 367 AQNGHYEEALNMFVEMKR-----DGESSNRSTFSCALSTCADIAALELGKQVHGQVV 418
Score = 46.2 bits (108), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 48/201 (23%), Positives = 85/201 (42%), Gaps = 12/201 (5%)
Query: 6 QIQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSNS 65
Q+ ++ +G F F LL GS D VF+ I N +I Y+
Sbjct: 412 QVHGQVVKAG-FETGCFVGNALLGMYFKCGSTDEANDVFEGIEEKDVVSWNTMIAGYARH 470
Query: 66 CVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGG-MCHGLALKNGVDFELPV 124
Q +V + M K G P+ T V + +C+ +G ++RG + + V
Sbjct: 471 GFGRQALVLFESMKKAGVKPDEITMVGVLSACSHSGLIDRGTEYFYSMDRDYNVKPTSKH 530
Query: 125 MNSLINMYGCFGAMDCARNMFVQMSPRD--LISWNSI-----VSGHVRSGDMSAAHELFD 177
+I++ G G ++ A N+ M P D SW ++ + G+ G+ AA +F
Sbjct: 531 YTCMIDLLGRAGRLEEAENLMRNM-PFDPGAASWGALLGASRIHGNTELGE-KAAEMVFK 588
Query: 178 IMPERNVVSWNIMISGYSKSG 198
+ P+ N + ++ + Y+ SG
Sbjct: 589 MEPQ-NSGMYVLLSNLYAASG 608
>gi|449462994|ref|XP_004149219.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g11290-like [Cucumis sativus]
gi|449500964|ref|XP_004161240.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g11290-like [Cucumis sativus]
Length = 624
Score = 227 bits (579), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 133/482 (27%), Positives = 241/482 (50%), Gaps = 42/482 (8%)
Query: 3 QLLQIQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAY 62
Q+ Q+ A + T+G F N + LL + G+ + +F ++ + + ++ Y
Sbjct: 68 QVRQVHAQIATNGAFRNLAVAN-KLLYMYVERGALEDAQELFDGMSKRHPYSWSVIVGGY 126
Query: 63 SNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFEL 122
+ + +++++G + Y+ + +C ++ G + H + LK G+D+
Sbjct: 127 AKVGNFFSCFWMFRELLRSGAPLDDYSAPVVIRACRDLKDLKCGRLIHCITLKCGLDYGH 186
Query: 123 PVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPER 182
V +L++MY R + AH++F M +R
Sbjct: 187 FVCATLVDMYA-------------------------------RCKVVEDAHQIFVKMWKR 215
Query: 183 NVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVH 242
++ +W +MI ++SG P SL F M G + + +V+ AC + N+ +++H
Sbjct: 216 DLATWTVMIGALAESGVPVESLVFFDRMRNQGIVPDKVALVTVVYACAKLGAMNKAKAIH 275
Query: 243 GYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPE 302
Y T ++IL TA+ID+Y+KC VE A+ +FD M RN++ W+AMI + HG+ E
Sbjct: 276 AYINGTGYSLDVILGTAMIDMYAKCGSVESARWIFDRMQVRNVITWSAMIAAYGYHGQGE 335
Query: 303 EGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFA 362
+ ++LF ++ I P+ ITF+ ++ AC A L+ EG+++F M D Y + P+
Sbjct: 336 KALELFPMMLR-----SGILPNRITFVSLLYACSHAGLIEEGQRFFSSMWDEYGVTPDVK 390
Query: 363 HYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAK 422
HY CM +L A +EA E++ MP + D ++W +LL CR + + ER+A+
Sbjct: 391 HYTCMVDLLGRAGRLDEALEMIEGMPVEKDE-----VLWGALLGACRIHRHLDLAERVAR 445
Query: 423 SFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLKEVVEKLK 482
S + + Q Y L N+YA AG+WED+A+ R+LM K + ++PG +++ E + +
Sbjct: 446 SLLKLQSQKPGHYVLLSNIYANAGKWEDMAKTRDLMTKGGLRKIPGRTWIEVGEKLYQFG 505
Query: 483 VG 484
VG
Sbjct: 506 VG 507
>gi|357487543|ref|XP_003614059.1| hypothetical protein MTR_5g044260 [Medicago truncatula]
gi|355515394|gb|AES97017.1| hypothetical protein MTR_5g044260 [Medicago truncatula]
Length = 565
Score = 227 bits (579), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 139/452 (30%), Positives = 228/452 (50%), Gaps = 51/452 (11%)
Query: 43 VFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMI----KNGFMPNSYTFVSLFGSCA 98
+ + I+ P +F N +I++YS S + Q + + I +N P+ +T+ + +CA
Sbjct: 37 ILRTIHTPNSFTWNILIQSYSKSTLHKQKAILLYKAIITEQENELFPDKHTYPFVLKACA 96
Query: 99 KTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNS 158
+ G H LK G + + + NSLI+ Y G ++ AR
Sbjct: 97 YLFSLFEGKQVHAHVLKLGFELDTYICNSLIHFYASCGYLETAR---------------- 140
Query: 159 IVSGHVRSGDMSAAHELFDIMPE-RNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRG 217
++FD M E RNVVSWN+MI Y+K G+ L +F EMMK +
Sbjct: 141 ---------------KVFDRMCEWRNVVSWNVMIDSYAKVGDYDIVLIMFCEMMKV-YEP 184
Query: 218 NDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKP---NIILDTALIDLYSKCQKVEVAQ 274
+ TM SV+ ACG + G VH + ++ K +++++T L+D+Y KC +E+A+
Sbjct: 185 DCYTMQSVIRACGGLGSLSLGMWVHAFVLKKCDKNVVCDVLVNTCLVDMYCKCGSLEIAK 244
Query: 275 RVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICA 334
+VF+ M+ R++ WN++ILG +HGK + + F +V I P+ ITF+GV+ A
Sbjct: 245 QVFEGMSYRDVSSWNSIILGFAVHGKAKAALDYFVRMVKVE----KIVPNSITFVGVLSA 300
Query: 335 CVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNM 394
C + ++ EG YF M Y ++P+ HY C+ +LYA A +EA ++ +MP D
Sbjct: 301 CNHSGMVDEGLMYFEMMTKEYNVEPSLVHYGCLVDLYARAGHIQEALNVVSEMPIKPD-- 358
Query: 395 SFESIMWVSLLSLCRFQGA-VAMVERLAKSFVDMDPQDF-SRYQFLLNVYAVAGQWEDVA 452
+++W SLL C Q A V + E +AK + + Y L VYA A +W DV
Sbjct: 359 ---AVIWRSLLDACYKQHASVELSEEMAKQIFESNGSVCGGAYVLLSKVYASASRWNDVG 415
Query: 453 RVRELMKKRRMGRMPGCRLVDLKEVVEKLKVG 484
+R+LM + + + PGC L+++ + G
Sbjct: 416 LLRKLMNDKGVSKKPGCSLIEINGAAHEFFAG 447
>gi|15218900|ref|NP_176180.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|193806498|sp|Q0WQW5.2|PPR85_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g59720, mitochondrial; Flags: Precursor
gi|332195486|gb|AEE33607.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 638
Score = 227 bits (579), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 148/499 (29%), Positives = 246/499 (49%), Gaps = 55/499 (11%)
Query: 1 MKQLLQIQAHLITSGLFFNNS--FWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAV 58
M QL Q+ A + + + F +L+ S+ F +Y VF I N +F N +
Sbjct: 61 MSQLKQLHAFTLRTTYPEEPATLFLYGKILQLSSSFSDVNYAFRVFDSIENHSSFMWNTL 120
Query: 59 IKAYSNSCV-PDQGVVFYLQMIKNG-FMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKN 116
I+A ++ ++ + Y +M++ G P+ +TF + +CA G H +K+
Sbjct: 121 IRACAHDVSRKEEAFMLYRKMLERGESSPDKHTFPFVLKACAYIFGFSEGKQVHCQIVKH 180
Query: 117 GVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELF 176
G ++ V N LI++YG G +D AR ++F
Sbjct: 181 GFGGDVYVNNGLIHLYGSCGCLDLAR-------------------------------KVF 209
Query: 177 DIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFN 236
D MPER++VSWN MI + G +L+LFREM +S F + TM SVL+AC +
Sbjct: 210 DEMPERSLVSWNSMIDALVRFGEYDSALQLFREMQRS-FEPDGYTMQSVLSACAGLGSLS 268
Query: 237 EGRSVHGYTVR---TSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMIL 293
G H + +R + ++++ +LI++Y KC + +A++VF M R+L WNAMIL
Sbjct: 269 LGTWAHAFLLRKCDVDVAMDVLVKNSLIEMYCKCGSLRMAEQVFQGMQKRDLASWNAMIL 328
Query: 294 GHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMID 353
G HG+ EE + F +V+ ++ P+ +TF+G++ AC + +GR+YF M+
Sbjct: 329 GFATHGRAEEAMNFFDRMVDKR---ENVRPNSVTFVGLLIACNHRGFVNKGRQYFDMMVR 385
Query: 354 FYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGA 413
Y I+P HY C+ +L A A EA +++ MP M ++++W SLL C +GA
Sbjct: 386 DYCIEPALEHYGCIVDLIARAGYITEAIDMVMSMP-----MKPDAVIWRSLLDACCKKGA 440
Query: 414 -VAMVERLAKSFVDMDPQDFSR-------YQFLLNVYAVAGQWEDVARVRELMKKRRMGR 465
V + E +A++ + + S Y L VYA A +W DV VR+LM + + +
Sbjct: 441 SVELSEEIARNIIGTKEDNESSNGNCSGAYVLLSRVYASASRWNDVGIVRKLMSEHGIRK 500
Query: 466 MPGCRLVDLKEVVEKLKVG 484
PGC +++ + + G
Sbjct: 501 EPGCSSIEINGISHEFFAG 519
>gi|224140095|ref|XP_002323422.1| predicted protein [Populus trichocarpa]
gi|222868052|gb|EEF05183.1| predicted protein [Populus trichocarpa]
Length = 574
Score = 227 bits (578), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 132/482 (27%), Positives = 240/482 (49%), Gaps = 42/482 (8%)
Query: 3 QLLQIQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAY 62
Q+ Q+ A + T+G+ ++ LL A L+F + + +I +
Sbjct: 18 QIKQVHAQVTTTGII-HDLIVANKLLYMCAKHKDLVTAHLLFNKMEERDPVSWSVMIGGF 76
Query: 63 SNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFEL 122
+ ++ + ++I+ G P++++ + +C T + G + H LKNG+ +
Sbjct: 77 VKNGDYERCFQTFRELIRAGSKPDNFSLPFVIKACRDTMGLIMGRLIHSTVLKNGLHLDN 136
Query: 123 PVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPER 182
V ++L++MY G +D A+ +LFD MP++
Sbjct: 137 FVCSTLVDMYAKCGMIDNAK-------------------------------QLFDRMPKK 165
Query: 183 NVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVH 242
++V+ +MI+GY++ G P S LF +M + GF + M +++ AC + N+ R VH
Sbjct: 166 DLVTRTVMIAGYAECGKPNESWVLFDQMRRDGFVPDKVAMVTIVNACAKLGAMNKARLVH 225
Query: 243 GYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPE 302
Y ++ L TA+ID+Y+KC ++ ++ +FD M +N++ W+AMI + HG+
Sbjct: 226 DYVCARRYSLDVELGTAMIDMYAKCGSIDSSREIFDRMEQKNVISWSAMIGAYGYHGQGR 285
Query: 303 EGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFA 362
E ++LF ++N I P+ ITFI ++ AC A L+ +G + F M Y ++P+
Sbjct: 286 EALELFHMMLN-----SGIIPNRITFISLLYACSHAGLVDDGLQLFSLMSVSYGVRPDVK 340
Query: 363 HYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAK 422
HY CM +L A ++A ++ M + D E I W + L CR V + E+ AK
Sbjct: 341 HYTCMVDLLGRAGRLDQALRLIENMEVEKD----EGI-WCAFLGACRIHRQVDLAEKAAK 395
Query: 423 SFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLKEVVEKLK 482
+ + Q+ Y L N+YA AG+W+DVA++R LM KRR+ ++PG +++ ++ +
Sbjct: 396 LLLSLQTQNPGHYILLSNIYANAGRWKDVAKIRNLMAKRRLKKIPGYTWIEVDNIIYRFG 455
Query: 483 VG 484
G
Sbjct: 456 AG 457
>gi|297736974|emb|CBI26175.3| unnamed protein product [Vitis vinifera]
Length = 619
Score = 227 bits (578), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 134/402 (33%), Positives = 200/402 (49%), Gaps = 57/402 (14%)
Query: 70 QGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLI 129
+ + Y M++ G PN V L +C +T V G HG+ ++ G D + ++I
Sbjct: 269 EALRMYRSMLRTGVGPNEVMIVDLISACGRTMAVSEGQQFHGIIVRTGFDCYDFIQATII 328
Query: 130 NMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNI 189
+ Y G ++ A F S + SWN+++SG VR+G + A +LFD MPER+V SW+
Sbjct: 329 HFYAACGEINLAFLQFELGSKDHVSSWNALISGFVRNGMIEQARQLFDEMPERDVFSWSS 388
Query: 190 MISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTS 249
MISG R H Y + S
Sbjct: 389 MISG---------------------------------------------RWAHEYILSNS 403
Query: 250 LKPNIILDTALIDLYSKCQKVEVAQRVFDSMADR--NLVCWNAMILGHCIHGKPEEGIKL 307
+ N L+ ALID+Y+KC + +A ++F + DR ++ WNA+I G +HG +KL
Sbjct: 404 IPLNDNLNAALIDMYAKCGSITIALQLFYEIQDRVSSVSPWNAIICGLAMHGHANVSLKL 463
Query: 308 FTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCM 367
F+ L I P+ ITFIGV+ AC A L+ G KYF+ M + Y I+PN HY CM
Sbjct: 464 FSQLQRV-----RIKPNSITFIGVLSACCHAGLVDTGEKYFKGMKNLYNIEPNIKHYGCM 518
Query: 368 ANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDM 427
+L A +EA E++RKMP M + ++W +LL+ CR G V + ER A++ +
Sbjct: 519 IDLLGRAGRLKEAAEMIRKMP-----MKADVVIWGTLLAACRTHGNVEIGERAAENLAKL 573
Query: 428 DPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGC 469
D + L N+YA AG+W+D VR M+ +RM + PGC
Sbjct: 574 DISHGAGRVLLSNIYADAGRWDDAFLVRRAMQSQRMKKSPGC 615
Score = 115 bits (289), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 75/283 (26%), Positives = 148/283 (52%), Gaps = 11/283 (3%)
Query: 89 TFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQM 148
T VS SC+ + +G H L K+G+ + V NSLI+ Y + AR++F
Sbjct: 54 TLVSALKSCSSLLALSQGQQIHSLVFKSGLLSNIFVKNSLISFYVKCRLISNARSLFDTC 113
Query: 149 SPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFR 208
S D +S N +++G+V+SG + A LF+ MP + VS+ M+ G +++ ++ +F+
Sbjct: 114 SVLDPVSCNIMLAGYVKSGSLDNARHLFEKMPIKGCVSYTTMVMGLAQNNCWLEAIGVFK 173
Query: 209 EMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQ 268
+M +G N+ T+ASV++A R +H + + L+ I+ T L+ +Y C
Sbjct: 174 DMRFAGVIPNEVTLASVISAYSHVGGILNCRMLHALSFKLGLEALNIVATNLVHMYCVCS 233
Query: 269 K-VEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEIT 327
+ V++A+ +F+ + +++V W +I G+ + E ++++ +++ V P+E+
Sbjct: 234 RLVDLARDLFERIPAKDVVSWGTIIDGYVQIERLGEALRMYRSMLRTGVG-----PNEVM 288
Query: 328 FIGVICACVRAELLTEGRKY----FRQMIDFYK-IKPNFAHYW 365
+ +I AC R ++EG+++ R D Y I+ H++
Sbjct: 289 IVDLISACGRTMAVSEGQQFHGIIVRTGFDCYDFIQATIIHFY 331
>gi|225424875|ref|XP_002269101.1| PREDICTED: pentatricopeptide repeat-containing protein At1g59720,
mitochondrial-like [Vitis vinifera]
Length = 607
Score = 227 bits (578), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 149/492 (30%), Positives = 242/492 (49%), Gaps = 49/492 (9%)
Query: 1 MKQLLQIQAHLI-TSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVI 59
+ QL Q+ A I T+ N+F+ + + H + Y VF I NP +F NA+I
Sbjct: 39 ISQLKQLHAQTIRTTSSHHPNTFFLYSRILHFSSLHDLRYAFRVFHQIENPNSFMWNALI 98
Query: 60 KAYSNSCVPDQ-GVVFYLQMIKNG-FMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNG 117
+A + S Q + Y +M++ G M + +TF + +CA + G H LK G
Sbjct: 99 RACARSTDRKQHAIALYHRMLEQGSVMQDKHTFPFVLKACAYLFALSEGEQIHAQILKLG 158
Query: 118 VDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFD 177
D ++ + NSL++ Y +D A+ +FD
Sbjct: 159 FDSDVYINNSLVHFYATCDRLDFAKG-------------------------------VFD 187
Query: 178 IMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNE 237
M ER++VSWN++I + + G +L LF EM K F + T+ S+ AC +
Sbjct: 188 RMSERSLVSWNVVIDAFVRFGEFDAALNLFGEMQKF-FEPDGYTIQSIANACAGMGSLSL 246
Query: 238 GRSVHGYTVR---TSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILG 294
G H + ++ +++L+T+L+D+Y KC +E+A ++F M R++ WN+MILG
Sbjct: 247 GMWAHVFLLKKFDADRVNDVLLNTSLVDMYCKCGSLELALQLFHRMPKRDVTSWNSMILG 306
Query: 295 HCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDF 354
HG+ ++ F +V + P+ ITF+GV+ AC L++EGR+YF M+
Sbjct: 307 FSTHGEVAAALEYFGCMVRTE----KLMPNAITFVGVLSACNHGGLVSEGRRYFDVMVTE 362
Query: 355 YKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGA- 413
YKIKP HY C+ +L A A L +EA +++ MP M + ++W SLL C Q A
Sbjct: 363 YKIKPELEHYGCLVDLLARAGLIDEALDVVSNMP-----MRPDLVIWRSLLDACCKQNAG 417
Query: 414 VAMVERLAKSFVDMDPQDFS-RYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLV 472
V + E +A+ ++ + S Y L VYA A +W DV VR+LM + + + PGC +
Sbjct: 418 VELSEEMARRVLEAEGGVCSGVYVLLSRVYASASRWNDVGMVRKLMTDKGVVKEPGCSSI 477
Query: 473 DLKEVVEKLKVG 484
++ V + G
Sbjct: 478 EIDGVAHEFFAG 489
>gi|125548143|gb|EAY93965.1| hypothetical protein OsI_15743 [Oryza sativa Indica Group]
gi|125590256|gb|EAZ30606.1| hypothetical protein OsJ_14659 [Oryza sativa Japonica Group]
Length = 328
Score = 227 bits (578), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 122/339 (35%), Positives = 192/339 (56%), Gaps = 18/339 (5%)
Query: 148 MSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLF 207
M D++S N++V G+V++G + A +F+ MPER+ VSW +++G +K+G +++LF
Sbjct: 1 MRAPDVVSHNALVHGYVKAGRLGLAVRVFEGMPERDAVSWGTVVAGCAKAGRLEKAVRLF 60
Query: 208 REMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKC 267
M + G+R +D +A+VL+ C + ++G+ VH Y RT +PN+ L T ++DLY+KC
Sbjct: 61 DRMRREGYRPDDVALAAVLSCCAQLGALDKGQEVHEYVRRTRPRPNVYLCTGIVDLYAKC 120
Query: 268 QKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFT-ALVNGTVAGGSISPDEI 326
+VEVA+ VFD+ ++N+ WNA+I+G +HG + F LV G PD
Sbjct: 121 GRVEVAREVFDACPEKNVFTWNALIVGLAMHGHGTVALDYFDRMLVEG------FRPDGT 174
Query: 327 TFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRK 386
TF+GV+ C A L+ R+ F +M + + HY CMA+L A L +EA E++
Sbjct: 175 TFLGVLIGCSHAGLVDTARRIFYEMQHNHGVPRELKHYGCMADLLGRAGLIDEAMEMISS 234
Query: 387 MPEDNDNMSFESIMWVSLLSLCRFQG-AVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVA 445
MP M ++ +W +L+ CR G V E A+ ++++P D Y + +YA A
Sbjct: 235 MP-----MEADTYVWGGILAGCRMHGNNVEFAEVAARRLLELNPDDGGVYSAMAGIYADA 289
Query: 446 GQWEDVARVRELMKKRRMGRMPGCRLVDLKEVVEKLKVG 484
G+WEDVARVR R M M G R V + +LK G
Sbjct: 290 GRWEDVARVR-----RSMDEMVGMRNVGRSSIAMELKDG 323
Score = 57.0 bits (136), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 48/270 (17%), Positives = 101/270 (37%), Gaps = 41/270 (15%)
Query: 40 TVLVFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAK 99
V VF+ + V+ + + ++ V + +M + G+ P+ ++ CA+
Sbjct: 25 AVRVFEGMPERDAVSWGTVVAGCAKAGRLEKAVRLFDRMRREGYRPDDVALAAVLSCCAQ 84
Query: 100 TGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSI 159
G +++G H + + + ++++Y G ++ AR +F +++ +WN+
Sbjct: 85 LGALDKGQEVHEYVRRTRPRPNVYLCTGIVDLYAKCGRVEVAREVFDACPEKNVFTWNA- 143
Query: 160 VSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGND 219
+I G + G+ +L F M+ GFR +
Sbjct: 144 ------------------------------LIVGLAMHGHGTVALDYFDRMLVEGFRPDG 173
Query: 220 KTMASVLTACGRSARFNEGRSV-----HGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQ 274
T VL C + + R + H + V LK + DL + ++ A
Sbjct: 174 TTFLGVLIGCSHAGLVDTARRIFYEMQHNHGVPRELKHY----GCMADLLGRAGLIDEAM 229
Query: 275 RVFDSMA-DRNLVCWNAMILGHCIHGKPEE 303
+ SM + + W ++ G +HG E
Sbjct: 230 EMISSMPMEADTYVWGGILAGCRMHGNNVE 259
>gi|8778758|gb|AAF79766.1|AC009317_25 T30E16.32 [Arabidopsis thaliana]
Length = 695
Score = 227 bits (578), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 148/499 (29%), Positives = 246/499 (49%), Gaps = 55/499 (11%)
Query: 1 MKQLLQIQAHLITSGLFFNNS--FWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAV 58
M QL Q+ A + + + F +L+ S+ F +Y VF I N +F N +
Sbjct: 118 MSQLKQLHAFTLRTTYPEEPATLFLYGKILQLSSSFSDVNYAFRVFDSIENHSSFMWNTL 177
Query: 59 IKAYSNSCV-PDQGVVFYLQMIKNG-FMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKN 116
I+A ++ ++ + Y +M++ G P+ +TF + +CA G H +K+
Sbjct: 178 IRACAHDVSRKEEAFMLYRKMLERGESSPDKHTFPFVLKACAYIFGFSEGKQVHCQIVKH 237
Query: 117 GVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELF 176
G ++ V N LI++YG G +D AR ++F
Sbjct: 238 GFGGDVYVNNGLIHLYGSCGCLDLAR-------------------------------KVF 266
Query: 177 DIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFN 236
D MPER++VSWN MI + G +L+LFREM +S F + TM SVL+AC +
Sbjct: 267 DEMPERSLVSWNSMIDALVRFGEYDSALQLFREMQRS-FEPDGYTMQSVLSACAGLGSLS 325
Query: 237 EGRSVHGYTVR---TSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMIL 293
G H + +R + ++++ +LI++Y KC + +A++VF M R+L WNAMIL
Sbjct: 326 LGTWAHAFLLRKCDVDVAMDVLVKNSLIEMYCKCGSLRMAEQVFQGMQKRDLASWNAMIL 385
Query: 294 GHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMID 353
G HG+ EE + F +V+ ++ P+ +TF+G++ AC + +GR+YF M+
Sbjct: 386 GFATHGRAEEAMNFFDRMVDKR---ENVRPNSVTFVGLLIACNHRGFVNKGRQYFDMMVR 442
Query: 354 FYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGA 413
Y I+P HY C+ +L A A EA +++ MP M ++++W SLL C +GA
Sbjct: 443 DYCIEPALEHYGCIVDLIARAGYITEAIDMVMSMP-----MKPDAVIWRSLLDACCKKGA 497
Query: 414 -VAMVERLAKSFVDMDPQDFSR-------YQFLLNVYAVAGQWEDVARVRELMKKRRMGR 465
V + E +A++ + + S Y L VYA A +W DV VR+LM + + +
Sbjct: 498 SVELSEEIARNIIGTKEDNESSNGNCSGAYVLLSRVYASASRWNDVGIVRKLMSEHGIRK 557
Query: 466 MPGCRLVDLKEVVEKLKVG 484
PGC +++ + + G
Sbjct: 558 EPGCSSIEINGISHEFFAG 576
>gi|326530660|dbj|BAK01128.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 613
Score = 227 bits (578), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 128/410 (31%), Positives = 218/410 (53%), Gaps = 50/410 (12%)
Query: 85 PNSYTFVSLFGSCAKTGCVERG-GMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARN 143
P++ T+ +L +C ++G + + + +++ V + NS+++ + G MD AR
Sbjct: 165 PDAVTWNTLLRACLRSGLLPSARHLFDQMPVRDLVSY-----NSMLSGHAAAGDMDGARQ 219
Query: 144 MFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNV------------------- 184
+F M RD++SWNS+++GH R GDM A +FD MPER+V
Sbjct: 220 LFDGMPERDVVSWNSMLAGHTRCGDMEEARRMFDAMPERDVVSWNSMLDGYAQAGDVLAA 279
Query: 185 ------------VSWNIMISGYSKSGNPGCSLKLFREMMKSGFR-GNDKTMASVLTACGR 231
VSWN++++ Y++ N L+LF MM G N+KT SVLTACG
Sbjct: 280 RAVFDGMPRRSTVSWNVVLALYARVKNWRECLRLFDAMMAVGAAVPNEKTFVSVLTACGS 339
Query: 232 SARFNEGRSVHGYTVR--TSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWN 289
G+ VH + +L P+++L TAL+ +Y+KC +E A+ +FDSM +R++ WN
Sbjct: 340 LGDLERGKRVHDLVRQRWETLVPDVLLLTALLTMYAKCGVMEAARVIFDSMGERSVPSWN 399
Query: 290 AMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFR 349
+MI+G+ +HG+ E+ ++LF + P+E TF+ V+ +C L+ EG F
Sbjct: 400 SMIIGYGLHGQSEKALELFLEMER-----TGPRPNETTFVCVLSSCAHGGLVLEGWWCFD 454
Query: 350 QMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCR 409
+M+ Y ++P H+ CM +L A L +++ +++ + E +W +++S R
Sbjct: 455 RMVRLYGVEPKAEHFGCMMDLLGRAGLLTDSDTLVQNLQEKA-----SPALWGAMVSASR 509
Query: 410 FQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMK 459
Q + E + K ++M P++ Y L N+YA G+W DV +VRE+MK
Sbjct: 510 AQNGSRLGEFVGKKLIEMRPKEVGPYVLLSNIYAGEGRWNDVEKVREMMK 559
Score = 104 bits (260), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 80/307 (26%), Positives = 147/307 (47%), Gaps = 24/307 (7%)
Query: 85 PNSYTFVSLFGSCAKTGCVERGGMCHGLALKNG-VDFELPVMNSLINMYGCFGAMDCARN 143
PN +T L + + H LA+++G + +L + NSL+ Y G+ AR
Sbjct: 108 PNRHTIYPLPAASS----------LHALAVRSGHLPADLRLANSLLARYLAHGSHASARR 157
Query: 144 MFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCS 203
+F + D ++WN+++ +RSG + +A LFD MP R++VS+N M+SG++ +G+ +
Sbjct: 158 LFADVPRPDAVTWNTLLRACLRSGLLPSARHLFDQMPVRDLVSYNSMLSGHAAAGDMDGA 217
Query: 204 LKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDL 263
+LF M + + + S+L R E R + +++ +++D
Sbjct: 218 RQLFDGMPER----DVVSWNSMLAGHTRCGDMEEARRMFDAMPER----DVVSWNSMLDG 269
Query: 264 YSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISP 323
Y++ V A+ VFD M R+ V WN ++ + E ++LF A+ +A G+ P
Sbjct: 270 YAQAGDVLAARAVFDGMPRRSTVSWNVVLALYARVKNWRECLRLFDAM----MAVGAAVP 325
Query: 324 DEITFIGVICACVRAELLTEGRKYFRQMIDFYK-IKPNFAHYWCMANLYAGAELTEEAEE 382
+E TF+ V+ AC L G++ + ++ + P+ + +YA + E A
Sbjct: 326 NEKTFVSVLTACGSLGDLERGKRVHDLVRQRWETLVPDVLLLTALLTMYAKCGVMEAARV 385
Query: 383 ILRKMPE 389
I M E
Sbjct: 386 IFDSMGE 392
Score = 68.9 bits (167), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 55/203 (27%), Positives = 81/203 (39%), Gaps = 42/203 (20%)
Query: 43 VFKCINNPGTFCVNAVIKAYSN-----SCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSC 97
VF + T N V+ Y+ C+ +F M +PN TFVS+ +C
Sbjct: 282 VFDGMPRRSTVSWNVVLALYARVKNWRECL----RLFDAMMAVGAAVPNEKTFVSVLTAC 337
Query: 98 AKTGCVERGGMCHGLALKNGVDF--ELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLIS 155
G +ERG H L + ++ ++ +L+ MY G M+ AR +F M R + S
Sbjct: 338 GSLGDLERGKRVHDLVRQRWETLVPDVLLLTALLTMYAKCGVMEAARVIFDSMGERSVPS 397
Query: 156 WNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGF 215
WNS MI GY G +L+LF EM ++G
Sbjct: 398 WNS-------------------------------MIIGYGLHGQSEKALELFLEMERTGP 426
Query: 216 RGNDKTMASVLTACGRSARFNEG 238
R N+ T VL++C EG
Sbjct: 427 RPNETTFVCVLSSCAHGGLVLEG 449
>gi|147836314|emb|CAN59994.1| hypothetical protein VITISV_012660 [Vitis vinifera]
Length = 768
Score = 227 bits (578), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 124/370 (33%), Positives = 200/370 (54%), Gaps = 12/370 (3%)
Query: 116 NGVDFELPV-MNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHE 174
NG+ PV N +I Y G MD ++ +F +M R + S N+++S + R+G++ A E
Sbjct: 362 NGMTEMNPVSYNLMIKGYAVGGQMDDSKRLFEKMPCRTIFSSNTMISVYSRNGEIDKALE 421
Query: 175 LFD-IMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSA 233
LF+ E++ V+WN MISGY SG P +LKL+ M + + T +++ AC
Sbjct: 422 LFEETKNEKDPVTWNSMISGYIHSGQPEEALKLYITMHRLSIQQTRSTFSALFHACSCLG 481
Query: 234 RFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMIL 293
+G+ +H + ++T + N+ + T+LID+YSKC + AQ F S+ N+ W A+I
Sbjct: 482 SLQQGQLLHAHLIKTPFESNVYVGTSLIDMYSKCGSIMEAQTSFVSIFSPNVAAWTALIN 541
Query: 294 GHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMID 353
GH HG E I LF ++ +A P+ TF+GV+ AC RA L+ EG K F M
Sbjct: 542 GHAYHGLGSEAISLFDXMIEQGLA-----PNGATFVGVLSACSRAGLVNEGMKIFHSMER 596
Query: 354 FYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGA 413
Y + P HY C+ +L + EAEE ++KMP + D ++W +LLS C F
Sbjct: 597 CYSVTPTLEHYACVVDLLGRSGHIREAEEFIKKMPLEADG-----VVWGALLSACWFWMD 651
Query: 414 VAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVD 473
+ + ER+A+ DP+ S Y L N+YA G+W + VR++++ ++ + PGC ++
Sbjct: 652 LEVGERVAEKMFSFDPKPISSYVILSNIYAGLGRWREKMMVRKILRGFKVKKDPGCSWIE 711
Query: 474 LKEVVEKLKV 483
L + +
Sbjct: 712 LNNKIHVFSI 721
Score = 122 bits (306), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 86/296 (29%), Positives = 149/296 (50%), Gaps = 37/296 (12%)
Query: 56 NAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALK 115
N +I +YS + + M ++ + TF S+ CA+ C+ G + H L LK
Sbjct: 107 NTMISSYSKHGRFSEALFLVYSMHRSHMKLSESTFSSVLSVCARLRCLRDGKLIHCLVLK 166
Query: 116 NGVD-FELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHE 174
+G + FEL V ++L+ Y + AR +F + R+ + W+ ++ G+V M A
Sbjct: 167 SGSESFEL-VGSALLYFYASCFEIGEARRVFDVLVRRNEVLWSLMLVGYVTCNVMDDALS 225
Query: 175 LFDIMPERNVVSWNIMISGYSKSGNPGC--SLKLFREMMKSG-FRGNDKTMASVLTACGR 231
+F MP R+VV+W +ISG+SK+G+ GC +L++FR MM+SG N+ T V+ ACGR
Sbjct: 226 VFVKMPRRDVVAWTTLISGFSKNGD-GCGKALEMFRLMMRSGETTPNEFTFDCVVRACGR 284
Query: 232 SARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQ----------------------- 268
+ GR+VHG ++ L+ + + AL++ Y +C+
Sbjct: 285 LGILSVGRTVHGLLMKCGLEYDPSIGGALVEFYCECEAIDDALRVCKGVVNPCLNALNSL 344
Query: 269 --------KVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTV 316
++E A+ VF+ M + N V +N MI G+ + G+ ++ +LF + T+
Sbjct: 345 IEGLISMGRIEDAELVFNGMTEMNPVSYNLMIKGYAVGGQMDDSKRLFEKMPCRTI 400
Score = 121 bits (303), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 90/346 (26%), Positives = 163/346 (47%), Gaps = 40/346 (11%)
Query: 147 QMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKL 206
Q + ++IS N +S + + + A +LFD MP+R VVSWN MIS YSK G +L L
Sbjct: 66 QSNLSEIISTNIAISNYAKQSKLDVARQLFDQMPQRTVVSWNTMISSYSKHGRFSEALFL 125
Query: 207 FREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSK 266
M +S + ++ T +SVL+ C R +G+ +H +++ + ++ +AL+ Y+
Sbjct: 126 VYSMHRSHMKLSESTFSSVLSVCARLRCLRDGKLIHCLVLKSGSESFELVGSALLYFYAS 185
Query: 267 CQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLF-----------TALVNG- 314
C ++ A+RVFD + RN V W+ M++G+ ++ + +F T L++G
Sbjct: 186 CFEIGEARRVFDVLVRRNEVLWSLMLVGYVTCNVMDDALSVFVKMPRRDVVAWTTLISGF 245
Query: 315 ----------------TVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDF-YKI 357
+ G +P+E TF V+ AC R +L+ GR ++ +
Sbjct: 246 SKNGDGCGKALEMFRLMMRSGETTPNEFTFDCVVRACGRLGILSVGRTVHGLLMKCGLEY 305
Query: 358 KPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMV 417
P+ + Y E ++A + + + N ++ + + L+S+ R + A
Sbjct: 306 DPSIGG--ALVEFYCECEAIDDALRVCKGVV--NPCLNALNSLIEGLISMGRIEDA---- 357
Query: 418 ERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRM 463
E + +M+P Y ++ YAV GQ +D R+ E M R +
Sbjct: 358 ELVFNGMTEMNPVS---YNLMIKGYAVGGQMDDSKRLFEKMPCRTI 400
Score = 82.0 bits (201), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 58/239 (24%), Positives = 103/239 (43%), Gaps = 33/239 (13%)
Query: 56 NAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALK 115
N++I Y +S P++ + Y+ M + TF +LF +C+ G +++G + H +K
Sbjct: 436 NSMISGYIHSGQPEEALKLYITMHRLSIQQTRSTFSALFHACSCLGSLQQGQLLHAHLIK 495
Query: 116 NGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHEL 175
+ + V SLI+MY G++ A+ FV + ++ +W ++++GH G S A L
Sbjct: 496 TPFESNVYVGTSLIDMYSKCGSIMEAQTSFVSIFSPNVAAWTALINGHAYHGLGSEAISL 555
Query: 176 FDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARF 235
FD M E+ G N T VL+AC R+
Sbjct: 556 FDXMIEQ-------------------------------GLAPNGATFVGVLSACSRAGLV 584
Query: 236 NEGRSV-HGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMA-DRNLVCWNAMI 292
NEG + H S+ P + ++DL + + A+ M + + V W A++
Sbjct: 585 NEGMKIFHSMERCYSVTPTLEHYACVVDLLGRSGHIREAEEFIKKMPLEADGVVWGALL 643
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 48/102 (47%), Gaps = 5/102 (4%)
Query: 244 YTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEE 303
YT S II I Y+K K++VA+++FD M R +V WN MI + HG+ E
Sbjct: 62 YTAHQSNLSEIISTNIAISNYAKQSKLDVARQLFDQMPQRTVVSWNTMISSYSKHGRFSE 121
Query: 304 GIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGR 345
+ L ++ + E TF V+ C R L +G+
Sbjct: 122 ALFLVYSMHR-----SHMKLSESTFSSVLSVCARLRCLRDGK 158
Score = 44.3 bits (103), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 37/164 (22%), Positives = 71/164 (43%), Gaps = 3/164 (1%)
Query: 1 MKQLLQIQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIK 60
++Q + AHLI + F +N + +L+ + GS F I +P A+I
Sbjct: 483 LQQGQLLHAHLIKTP-FESNVYVGTSLIDMYSKCGSIMEAQTSFVSIFSPNVAAWTALIN 541
Query: 61 AYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERG-GMCHGLALKNGVD 119
++ + + + + MI+ G PN TFV + +C++ G V G + H + V
Sbjct: 542 GHAYHGLGSEAISLFDXMIEQGLAPNGATFVGVLSACSRAGLVNEGMKIFHSMERCYSVT 601
Query: 120 FELPVMNSLINMYGCFGAMDCARNMFVQMS-PRDLISWNSIVSG 162
L ++++ G G + A +M D + W +++S
Sbjct: 602 PTLEHYACVVDLLGRSGHIREAEEFIKKMPLEADGVVWGALLSA 645
>gi|357450099|ref|XP_003595326.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355484374|gb|AES65577.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 740
Score = 227 bits (578), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 153/490 (31%), Positives = 245/490 (50%), Gaps = 40/490 (8%)
Query: 4 LLQIQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAYS 63
L QI +IT+GL F ++ +L+K S+ F P Y +F I+NP F N +I +
Sbjct: 165 LKQIHTQIITTGLSFQ-TYCLSHLIKISSKFNLP-YAFKIFNYISNPTIFLYNTLISSLI 222
Query: 64 NSCVPDQ---GVVFYLQMIKN-GFMPNSYTFVSLFGSC-AKTGCVERGGMCHGLALKN-G 117
N +Q Y +++ N PNS+TF SLF +C + G + H LK
Sbjct: 223 NQTNQNQIHLAFSLYNKILTNKNLQPNSFTFPSLFKACCSNQSWFHYGPLLHTHVLKFLQ 282
Query: 118 VDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFD 177
F+ V SL+N Y +G M +R +F +++ DL +WN I++ + RS + FD
Sbjct: 283 PPFDNFVQASLLNFYAKYGKMCVSRYIFDRINEPDLATWNVILNAYARSSSYHSYSNSFD 342
Query: 178 IMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNE 237
+ +S SL LFR+M G R N+ T+ ++++AC ++
Sbjct: 343 -------------DADFSLE-----SLYLFRDMQVIGIRPNEVTIVALISACSNLGAVSQ 384
Query: 238 GRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMA--DRNLVCWNAMILGH 295
G VH + +R +K N + TA +D+YSKC + +A +VFD M DR+ C+ AMI G
Sbjct: 385 GFWVHCFVLRNKIKMNRFVGTAFVDMYSKCGCLNLACQVFDKMPENDRDSFCYTAMIGGF 444
Query: 296 CIHGKPEEGIKLFTAL-VNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDF 354
+HG + ++L+ + G V PD TF+ + AC L+ EG + F+ M +
Sbjct: 445 AVHGYGNQALELYRKMKFKGLV------PDSATFVVTMFACSHVGLVEEGLEIFKSMKEV 498
Query: 355 YKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAV 414
+ ++P HY C+ +L A +EAEE L MP M +++W SLL R G +
Sbjct: 499 HGVEPKLEHYGCLIDLLGRAGRLKEAEEWLADMP-----MKPNAVLWRSLLGAARIHGNL 553
Query: 415 AMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDL 474
+ E ++++P+ Y L N+YA G+ DV RVR+LMK + ++PG LV++
Sbjct: 554 GVGEVALTKLIELEPETSGNYVLLSNMYASVGRVNDVKRVRKLMKHHGVNKLPGFSLVEI 613
Query: 475 KEVVEKLKVG 484
K + + G
Sbjct: 614 KGAMHEFLTG 623
>gi|356533814|ref|XP_003535453.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g25360-like [Glycine max]
Length = 782
Score = 227 bits (578), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 137/434 (31%), Positives = 221/434 (50%), Gaps = 18/434 (4%)
Query: 56 NAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALK 115
NA+I Y + ++ +M G + YT+ S+ + + G G H L+
Sbjct: 243 NAMISGYVHRGFYEEAFDLLRRMHSLGIQLDEYTYTSVISAASNAGLFNIGRQVHAYVLR 302
Query: 116 NGVD----FELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSA 171
V F L V N+LI +Y G + AR +F +M +DL+SWN+I+SG V + +
Sbjct: 303 TVVQPSGHFVLSVNNALITLYTRCGKLVEARRVFDKMPVKDLVSWNAILSGCVNARRIEE 362
Query: 172 AHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGR 231
A+ +F MP R++++W +MISG +++G LKLF +M G D A + +C
Sbjct: 363 ANSIFREMPVRSLLTWTVMISGLAQNGFGEEGLKLFNQMKLEGLEPCDYAYAGAIASCSV 422
Query: 232 SARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAM 291
+ G+ +H ++ ++ + ALI +YS+C VE A VF +M + V WNAM
Sbjct: 423 LGSLDNGQQLHSQIIQLGHDSSLSVGNALITMYSRCGLVEAADTVFLTMPYVDSVSWNAM 482
Query: 292 ILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQM 351
I HG + I+L+ ++ I PD ITF+ ++ AC A L+ EGR YF M
Sbjct: 483 IAALAQHGHGVQAIQLYEKMLK-----EDILPDRITFLTILSACSHAGLVKEGRHYFDTM 537
Query: 352 IDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFE--SIMWVSLLSLCR 409
Y I P HY + +L A + EA+ + MP FE + +W +LL+ C
Sbjct: 538 RVCYGITPEEDHYSRLIDLLCRAGMFSEAKNVTESMP-------FEPGAPIWEALLAGCW 590
Query: 410 FQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGC 469
G + + + A +++ PQ Y L N+YA GQW++VARVR+LM++R + + PGC
Sbjct: 591 IHGNMELGIQAADRLLELMPQQDGTYISLSNMYAALGQWDEVARVRKLMRERGVKKEPGC 650
Query: 470 RLVDLKEVVEKLKV 483
++++ +V V
Sbjct: 651 SWIEVENMVHVFLV 664
Score = 155 bits (392), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 117/432 (27%), Positives = 204/432 (47%), Gaps = 63/432 (14%)
Query: 52 TFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCA-----KTGCVERG 106
T NA+I A+S+S + ++QM + GF+P+ +TF S+ G+ + +T C +
Sbjct: 95 TVSYNAMITAFSHSHDGHAALQLFVQMKRLGFVPDPFTFSSVLGALSLIADEETHCQQ-- 152
Query: 107 GMCHGLALKNGVDFELPVMNSLINMY-GCFGA--------MDCARNMFVQMSP--RDLIS 155
H K G V+N+L++ Y C + M AR +F + P RD +
Sbjct: 153 --LHCEVFKWGALSVPSVLNALMSCYVSCASSPLVNSCVLMAAARKLFDEAPPGRRDEPA 210
Query: 156 WNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGF 215
W +I++G+VR+ D+ AA EL + M + V+WN MISGY G + L R M G
Sbjct: 211 WTTIIAGYVRNDDLVAARELLEGMTDHIAVAWNAMISGYVHRGFYEEAFDLLRRMHSLGI 270
Query: 216 RGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPN----IILDTALIDLYSKCQKVE 271
+ ++ T SV++A + FN GR VH Y +RT ++P+ + ++ ALI LY++C K+
Sbjct: 271 QLDEYTYTSVISAASNAGLFNIGRQVHAYVLRTVVQPSGHFVLSVNNALITLYTRCGKLV 330
Query: 272 VAQRVFDSMADRNLVCWNAMILGHCIHGK------------PEEGIKLFTALVNGTVAGG 319
A+RVFD M ++LV WNA++ G C++ + P + +T +++G G
Sbjct: 331 EARRVFDKMPVKDLVSWNAILSG-CVNARRIEEANSIFREMPVRSLLTWTVMISGLAQNG 389
Query: 320 ---------------SISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHY 364
+ P + + G I +C L G++ Q+I + +
Sbjct: 390 FGEEGLKLFNQMKLEGLEPCDYAYAGAIASCSVLGSLDNGQQLHSQIIQLGH-DSSLSVG 448
Query: 365 WCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQG----AVAMVERL 420
+ +Y+ L E A+ + MP +S+ W ++++ G A+ + E++
Sbjct: 449 NALITMYSRCGLVEAADTVFLTMP------YVDSVSWNAMIAALAQHGHGVQAIQLYEKM 502
Query: 421 AKSFVDMDPQDF 432
K + D F
Sbjct: 503 LKEDILPDRITF 514
Score = 75.1 bits (183), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 84/349 (24%), Positives = 140/349 (40%), Gaps = 63/349 (18%)
Query: 110 HGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDM 169
H L +G ++N LI+ Y + AR +F ++ D+++ +++S + +G++
Sbjct: 19 HAHILTSGFKPFPLIINRLIDHYCKSFNIPYARYLFDKIPKPDIVAATTMLSAYSAAGNI 78
Query: 170 SAAHELFDIMPE--RNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLT 227
AH+LF+ P R+ VS+N MI+ +S S + +L+LF +M + GF + T +SVL
Sbjct: 79 KLAHQLFNATPMSIRDTVSYNAMITAFSHSHDGHAALQLFVQMKRLGFVPDPFTFSSVLG 138
Query: 228 ACGRSAR-----------------------FNEGRSVHGYTVRTSLKPNIILDTA----- 259
A A N S + + L + +L A
Sbjct: 139 ALSLIADEETHCQQLHCEVFKWGALSVPSVLNALMSCYVSCASSPLVNSCVLMAAARKLF 198
Query: 260 ---------------LIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEG 304
+I Y + + A+ + + M D V WNAMI G+ G EE
Sbjct: 199 DEAPPGRRDEPAWTTIIAGYVRNDDLVAARELLEGMTDHIAVAWNAMISGYVHRGFYEEA 258
Query: 305 IKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHY 364
L + I DE T+ VI A A L GR+ ++ ++P+ H+
Sbjct: 259 FDLLRRM-----HSLGIQLDEYTYTSVISAASNAGLFNIGRQVHAYVLRTV-VQPS-GHF 311
Query: 365 WCMAN-----LYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLC 408
N LY EA + KMP + + W ++LS C
Sbjct: 312 VLSVNNALITLYTRCGKLVEARRVFDKMPVK------DLVSWNAILSGC 354
>gi|125537150|gb|EAY83638.1| hypothetical protein OsI_38867 [Oryza sativa Indica Group]
Length = 914
Score = 226 bits (577), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 149/484 (30%), Positives = 235/484 (48%), Gaps = 40/484 (8%)
Query: 20 NSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMI 79
++F +L+ A G+P + F + +F + +IKA S + V V + ++
Sbjct: 416 DAFLANTMLRAYALGGAPRDALAAFSAMPRRDSFTYSFLIKALSAAGVAPVRAV-HSHVV 474
Query: 80 KNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELP-----VMNSLINMYGC 134
K G + +++ +L + +K G G + V E+P N+ +
Sbjct: 475 KLGSVEDTFVGNALIDAYSKNG---------GFSDARKVFDEMPERDVVSWNTAMAAMVR 525
Query: 135 FGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGY 194
G + AR +F +M +D +SWN+I+ G+ ++G++ AA ELF MPERNVVSW+ M+SGY
Sbjct: 526 EGELAGARKLFDEMPEKDTVSWNTILDGYTKAGEVEAAFELFQRMPERNVVSWSTMVSGY 585
Query: 195 SKSGN-----------PGCSLKLFREMMKSGFRGND-KTMASVLTACGRSARFNEGRSVH 242
K G+ PG +L + MMK D + S+L AC S + G+ +H
Sbjct: 586 CKKGDLEMARVIFDKMPGKNLVTWTIMMKEASVELDVAAVVSILAACAESGSLSLGKRIH 645
Query: 243 GYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDS-MADRNLVCWNAMILGHCIHGKP 301
Y + +L + + ALID++ KC V A VFD+ ++ V WN++I G +HG
Sbjct: 646 RYVRKRNLGRSTHVCNALIDMFCKCGCVNRADYVFDTETVQKDSVSWNSIIGGFAMHGHG 705
Query: 302 EEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNF 361
++ ++LF + +PD +T I V+ AC + EGR+YF M Y I P
Sbjct: 706 DKALELFAQMKQQ-----GFNPDAVTMINVLSACTHMGFVDEGRRYFSNMERDYGIMPQI 760
Query: 362 AHYWCMANLYAGAELTEEAEEILRKMP-EDNDNMSFESIMWVSLLSLCRFQGAVAMVERL 420
HY CM +L L +EA ++++ MP E N+ ++W SLLS CR V E
Sbjct: 761 EHYGCMIDLLGRGGLIKEAVDLIKSMPWEPNE------VIWGSLLSACRLHKNVEYAEIA 814
Query: 421 AKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLKEVVEK 480
+ P + Y L N+YA AGQW D+A+ R MK + G V+L E +
Sbjct: 815 VNELSKLQPSNAGNYAVLSNIYAEAGQWSDMAKARMQMKGTGSQKTAGSSWVELNETFHE 874
Query: 481 LKVG 484
VG
Sbjct: 875 FTVG 878
>gi|356513929|ref|XP_003525660.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Glycine max]
Length = 736
Score = 226 bits (577), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 139/455 (30%), Positives = 223/455 (49%), Gaps = 51/455 (11%)
Query: 56 NAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALK 115
NA+I Y S ++ + + +M + PN T VS+ +C +E G
Sbjct: 228 NAMIAGYVQSGRFEEALACFTRMQEADVSPNQSTMVSVLSACGHLRSLELGKWIGSWVRD 287
Query: 116 NGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHEL 175
G L ++N+L++MY + G++ A +L
Sbjct: 288 RGFGKNLQLVNALVDMYS-------------------------------KCGEIGTARKL 316
Query: 176 FDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARF 235
FD M +++V+ WN MI GY +L LF M++ ND T +VL AC
Sbjct: 317 FDGMEDKDVILWNTMIGGYCHLSLYEEALVLFEVMLRENVTPNDVTFLAVLPACASLGAL 376
Query: 236 NEGRSVHGYTVR----TSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAM 291
+ G+ VH Y + T N+ L T++I +Y+KC VEVA++VF SM R+L WNAM
Sbjct: 377 DLGKWVHAYIDKNLKGTGNVNNVSLWTSIIVMYAKCGCVEVAEQVFRSMGSRSLASWNAM 436
Query: 292 ILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQM 351
I G ++G E + LF ++N PD+ITF+GV+ AC +A + G +YF M
Sbjct: 437 ISGLAMNGHAERALGLFEEMINE-----GFQPDDITFVGVLSACTQAGFVELGHRYFSSM 491
Query: 352 IDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQ 411
Y I P HY CM +L A + +EA+ ++ M M + +W SLL+ CR
Sbjct: 492 NKDYGISPKLQHYGCMIDLLARSGKFDEAKVLMGNM-----EMEPDGAIWGSLLNACRIH 546
Query: 412 GAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRL 471
G V E +A+ +++P++ Y L N+YA AG+W+DVA++R + + M ++PGC
Sbjct: 547 GQVEFGEYVAERLFELEPENSGAYVLLSNIYAGAGRWDDVAKIRTKLNDKGMKKVPGCTS 606
Query: 472 VDLKEVVEKLKVGHFWRGG------MKEEVNKMME 500
+++ VV + VG + M +EV++++E
Sbjct: 607 IEIDGVVHEFLVGDKFHPQSENIFRMLDEVDRLLE 641
Score = 210 bits (535), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 129/394 (32%), Positives = 205/394 (52%), Gaps = 13/394 (3%)
Query: 1 MKQLLQIQAHLITSGLFFNNSFWTINLLKHSADFGSPD--YTVLVFKCINN--PGTFCVN 56
+ L QI + +I SGL N F L++ A S D Y + +F I++ P F N
Sbjct: 38 IPSLKQIHSLIIKSGLH-NTLFAQSKLIEFCALSPSRDLSYALSLFHSIHHQPPNIFIWN 96
Query: 57 AVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKN 116
+I+A+S + P + + QM+ +G PNS+TF SLF SCAK+ H ALK
Sbjct: 97 TLIRAHSLTPTPTSSLHLFSQMLHSGLYPNSHTFPSLFKSCAKSKATHEAKQLHAHALKL 156
Query: 117 GVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELF 176
+ V SLI+MY G + AR +F + + RD +S+ ++++G+V G + A LF
Sbjct: 157 ALHLHPHVHTSLIHMYSQVGELRHARLVFDKSTLRDAVSFTALITGYVSEGHVDDARRLF 216
Query: 177 DIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFN 236
D +P ++VVSWN MI+GY +SG +L F M ++ N TM SVL+ACG
Sbjct: 217 DEIPAKDVVSWNAMIAGYVQSGRFEEALACFTRMQEADVSPNQSTMVSVLSACGHLRSLE 276
Query: 237 EGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHC 296
G+ + + N+ L AL+D+YSKC ++ A+++FD M D++++ WN MI G+C
Sbjct: 277 LGKWIGSWVRDRGFGKNLQLVNALVDMYSKCGEIGTARKLFDGMEDKDVILWNTMIGGYC 336
Query: 297 IHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGR---KYFRQMID 353
EE + LF ++ V +P+++TF+ V+ AC L G+ Y + +
Sbjct: 337 HLSLYEEALVLFEVMLRENV-----TPNDVTFLAVLPACASLGALDLGKWVHAYIDKNLK 391
Query: 354 FYKIKPNFAHYWCMANLYAGAELTEEAEEILRKM 387
N + + + +YA E AE++ R M
Sbjct: 392 GTGNVNNVSLWTSIIVMYAKCGCVEVAEQVFRSM 425
Score = 52.0 bits (123), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 56/227 (24%), Positives = 103/227 (45%), Gaps = 19/227 (8%)
Query: 7 IQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSNSC 66
I +L +G N S WT +++ A G + VF+ + + NA+I + +
Sbjct: 386 IDKNLKGTGNVNNVSLWT-SIIVMYAKCGCVEVAEQVFRSMGSRSLASWNAMISGLAMNG 444
Query: 67 VPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKN-GVDFELPVM 125
++ + + +MI GF P+ TFV + +C + G VE G K+ G+ +L
Sbjct: 445 HAERALGLFEEMINEGFQPDDITFVGVLSACTQAGFVELGHRYFSSMNKDYGISPKLQHY 504
Query: 126 NSLINMYGCFGAMDCARNMF--VQMSPRDLISWNSI-----VSGHVRSGDMSAAHELFDI 178
+I++ G D A+ + ++M P I W S+ + G V G+ A LF++
Sbjct: 505 GCMIDLLARSGKFDEAKVLMGNMEMEPDGAI-WGSLLNACRIHGQVEFGEY-VAERLFEL 562
Query: 179 MPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASV 225
PE N ++ ++ + Y+ +G + ++ K + NDK M V
Sbjct: 563 EPE-NSGAYVLLSNIYAGAGR-------WDDVAKIRTKLNDKGMKKV 601
>gi|224140549|ref|XP_002323645.1| predicted protein [Populus trichocarpa]
gi|222868275|gb|EEF05406.1| predicted protein [Populus trichocarpa]
Length = 682
Score = 226 bits (577), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 133/465 (28%), Positives = 221/465 (47%), Gaps = 41/465 (8%)
Query: 20 NSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMI 79
++F I+L+ G D VF I + A I Y + + + +++
Sbjct: 142 DAFVKISLINLYTKCGFIDNAFKVFDDIPDKNFASWTATISGYVGVGKCREAIDMFRRLL 201
Query: 80 KNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMD 139
+ G P+S++ V + +C +TG + G +NG+ + V +L++ YG
Sbjct: 202 EMGLRPDSFSLVEVLSACKRTGDLRSGEWIDEYITENGMVRNVFVATALVDFYG------ 255
Query: 140 CARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGN 199
+ G+M A +FD M E+N+VSW+ MI GY+ +G
Sbjct: 256 -------------------------KCGNMERARSVFDGMLEKNIVSWSSMIQGYASNGL 290
Query: 200 PGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTA 259
P +L LF +M+ G + + M VL +C R G N +L TA
Sbjct: 291 PKEALDLFFKMLNEGLKPDCYAMVGVLCSCARLGALELGDWASNLINGNEFLDNSVLGTA 350
Query: 260 LIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGG 319
LID+Y+KC +++ A VF M ++ V WNA I G + G ++ + LF G +
Sbjct: 351 LIDMYAKCGRMDRAWEVFRGMRKKDRVVWNAAISGLAMSGHVKDALGLF-----GQMEKS 405
Query: 320 SISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEE 379
I PD TF+G++CAC A L+ EGR+YF M + + P HY CM +L A +E
Sbjct: 406 GIKPDRNTFVGLLCACTHAGLVEEGRRYFNSMECVFTLTPEIEHYGCMVDLLGRAGCLDE 465
Query: 380 AEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLL 439
A ++++ MP M +I+W +LL CR +VE + K + ++P Y L
Sbjct: 466 AHQLIKSMP-----MEANAIVWGALLGGCRLHRDTQLVEVVLKKLIALEPWHSGNYVLLS 520
Query: 440 NVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLKEVVEKLKVG 484
N+YA + +WE+ A++R +M +R + ++PG +++ VV + VG
Sbjct: 521 NIYAASHKWEEAAKIRSIMSERGVKKIPGYSWIEVDGVVHQFLVG 565
Score = 167 bits (423), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 113/436 (25%), Positives = 199/436 (45%), Gaps = 48/436 (11%)
Query: 1 MKQLLQIQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIK 60
+K L I A L+ GL +++ +L+ S +FG+ +Y+ + P F N +I+
Sbjct: 23 LKHLKHIHAALLRLGLD-EDTYLLNKVLRFSFNFGNTNYSFRILDQTKEPNIFLFNTMIR 81
Query: 61 AYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDF 120
+ + + Y M K G P+S+TF + +CA+ E G H L +K G +
Sbjct: 82 GLVLNDCFQESIEIYHSMRKEGLSPDSFTFPFVLKACARVLDSELGVKMHSLVVKAGCEA 141
Query: 121 ELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMP 180
+ V SLIN+Y + G + A ++FD +P
Sbjct: 142 DAFVKISLINLY-------------------------------TKCGFIDNAFKVFDDIP 170
Query: 181 ERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRS 240
++N SW ISGY G ++ +FR +++ G R + ++ VL+AC R+ G
Sbjct: 171 DKNFASWTATISGYVGVGKCREAIDMFRRLLEMGLRPDSFSLVEVLSACKRTGDLRSGEW 230
Query: 241 VHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGK 300
+ Y + N+ + TAL+D Y KC +E A+ VFD M ++N+V W++MI G+ +G
Sbjct: 231 IDEYITENGMVRNVFVATALVDFYGKCGNMERARSVFDGMLEKNIVSWSSMIQGYASNGL 290
Query: 301 PEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPN 360
P+E + LF ++N + PD +GV+C+C R L G + +I+ + N
Sbjct: 291 PKEALDLFFKMLN-----EGLKPDCYAMVGVLCSCARLGALELG-DWASNLINGNEFLDN 344
Query: 361 FAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQG----AVAM 416
+ ++YA + A E+ R M + + ++W + +S G A+ +
Sbjct: 345 SVLGTALIDMYAKCGRMDRAWEVFRGMRKK------DRVVWNAAISGLAMSGHVKDALGL 398
Query: 417 VERLAKSFVDMDPQDF 432
++ KS + D F
Sbjct: 399 FGQMEKSGIKPDRNTF 414
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 46/186 (24%), Positives = 72/186 (38%), Gaps = 31/186 (16%)
Query: 9 AHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSNSCVP 68
++LI F +NS L+ A G D VF+ + NA I + S
Sbjct: 333 SNLINGNEFLDNSVLGTALIDMYAKCGRMDRAWEVFRGMRKKDRVVWNAAISGLAMSGHV 392
Query: 69 DQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSL 128
+ + QM K+G P+ TFV L +C G VE G
Sbjct: 393 KDALGLFGQMEKSGIKPDRNTFVGLLCACTHAGLVEEG---------------------- 430
Query: 129 INMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMP-ERNVVSW 187
Y F +M+C ++P ++ + +V R+G + AH+L MP E N + W
Sbjct: 431 -RRY--FNSMECV----FTLTP-EIEHYGCMVDLLGRAGCLDEAHQLIKSMPMEANAIVW 482
Query: 188 NIMISG 193
++ G
Sbjct: 483 GALLGG 488
>gi|357118276|ref|XP_003560882.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g15300-like [Brachypodium distachyon]
Length = 508
Score = 226 bits (577), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 146/506 (28%), Positives = 242/506 (47%), Gaps = 42/506 (8%)
Query: 2 KQLLQIQAHLITSGLFFNNSFWTINLLKHSADF-GSPDYTVLVFKCINNPGTFCVNAVIK 60
+ L QI +L+ G+ LL A F G DY VF I++P F N +++
Sbjct: 11 RSLKQIHGNLVVKGITSRLQPLRELLLACVASFNGGMDYARKVFDGISHPDLFMHNVMVR 70
Query: 61 AYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDF 120
Y++S P V Y ++ P+S+TF L +CA G HG +K G
Sbjct: 71 GYAHSAAPAAAFVLYRRIEAARLKPDSFTFCYLLRACAGLPGSCAGYQVHGAVVKLGYFK 130
Query: 121 ELPVMNSLINMYG-------------------------------CFGAMDCARNMFVQMS 149
+ V N+LINM+ G +D AR +F +
Sbjct: 131 DAFVRNALINMHAKCGDLLVAGTLLDEAGERDVVARSAVIAGHAAKGELDIARQLFDECQ 190
Query: 150 PRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFRE 209
+DL+ WN +V+ + + G+M A L D PE++VVSWN +I+GY+ G +L++ E
Sbjct: 191 HKDLVCWNVMVAAYAKYGEMEKARGLLDRAPEKDVVSWNTIITGYTAKGLLKEALEVLDE 250
Query: 210 MMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQK 269
M G ++ T+ S+L+ C GR +H + +I+ AL+ +Y+KC
Sbjct: 251 MRCVGLMPDEATIVSLLSCCANLGSLGTGRMIHSLHLEGRPCISILPGNALVSMYAKCGD 310
Query: 270 VEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFI 329
V+ A VF M +R++ WN++I G HG+ E+ ++ F +++ + P+EI+F+
Sbjct: 311 VQAAMEVFSRMKERDVWTWNSIIGGLAFHGQAEQSVQFFNKMLD-----EGLCPNEISFL 365
Query: 330 GVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPE 389
V+ AC A L+ +G++YF MI+ Y+I+PN HY C+ ++ + L +EA I+ M
Sbjct: 366 CVLGACSHAGLVEDGQRYFSLMINRYRIEPNARHYSCIVDMLGRSGLLDEAFAIVSSM-- 423
Query: 390 DNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWE 449
++W +LL CR G VA+ + + + M+ Y L +YA +W
Sbjct: 424 ---RCEPAVVIWRTLLGACRIHGDVALGKLARERLLKMNEDASGDYVLLSGIYASCDEWF 480
Query: 450 DVARVRELMKKRRMGRMPGCRLVDLK 475
V VR M +R + ++ G V+ K
Sbjct: 481 GVETVRGSMDERGIRKVAGYAQVEQK 506
>gi|357521733|ref|XP_003631155.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355525177|gb|AET05631.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 785
Score = 226 bits (577), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 139/480 (28%), Positives = 228/480 (47%), Gaps = 43/480 (8%)
Query: 7 IQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAYS-NS 65
I A+ I + FF+N LL A Y +F +N C +A+I Y +
Sbjct: 232 IHAYYIRN-FFFDNVVLQTALLDMYAKCHLLFYARKIFNTVNKKNDVCWSAMIGGYVLHD 290
Query: 66 CVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVM 125
+ D ++ + G P T ++ +CA+ ++RG H +K+G+D + V
Sbjct: 291 SISDALALYDDMLCIYGLNPTPATLATMLRACAQLTDLKRGKKLHCHMIKSGMDLDTTVG 350
Query: 126 NSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVV 185
NSLI+MY + G M A D M ++ V
Sbjct: 351 NSLISMYA-------------------------------KCGIMDNAVGFLDEMIAKDTV 379
Query: 186 SWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYT 245
S++ +ISG ++G +L +FR+M SG +TM ++L AC A G HGYT
Sbjct: 380 SYSAIISGCVQNGYAEKALLIFRQMQSSGIAPYLETMIALLPACSHLAALQHGTCCHGYT 439
Query: 246 VRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGI 305
V + + A+ID+YSKC K+ +++ +FD M +R+++ WN MI+G+ IHG E +
Sbjct: 440 VVRGFTNDTSICNAIIDMYSKCGKITISREIFDRMQNRDIISWNTMIIGYGIHGLCVEAL 499
Query: 306 KLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYW 365
LF L + PD++T I V+ AC + L+TEG+ +F M + IKP AHY
Sbjct: 500 SLFQEL-----QALGLKPDDVTLIAVLSACSHSGLVTEGKYWFSSMSQNFNIKPRMAHYI 554
Query: 366 CMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFV 425
CM +L A A +EA +++MP +W +LL+ CR + M E+++K
Sbjct: 555 CMVDLLARAGNLDEAYTFIQRMP-----FVPNVRIWGALLAACRTHKNIEMGEQVSKKIQ 609
Query: 426 DMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLKEVVEKLKVGH 485
+ P+ + + N+Y+ G+W+D A +R + + + PGC V++ V+ GH
Sbjct: 610 LLGPEGTGNFVLMSNIYSSVGRWDDAAYIRSIQRHHGYKKSPGCSWVEISGVIHVFIGGH 669
Score = 142 bits (358), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 81/310 (26%), Positives = 152/310 (49%), Gaps = 33/310 (10%)
Query: 43 VFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGC 102
VF I P N +I+ Y+ S Q + YL M++ G P ++TF L +C+
Sbjct: 63 VFDQIPKPSVVLWNMMIRTYAWSGPFQQSIYLYLHMLQLGVTPTNFTFPFLLKACSSLQA 122
Query: 103 VERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSG 162
++ G + H A G+ +L V +L++MY G + A+ +F +S +D
Sbjct: 123 LQLGRLIHTHAHILGLSMDLYVSTALLHMYAKCGHLYQAQTLFNSISHQD---------- 172
Query: 163 HVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTM 222
R++V+WN MI+ +S ++ +M ++G N T+
Sbjct: 173 -------------------RDIVAWNAMIAAFSFHALHAQTIHSVAQMQQAGVTPNSSTL 213
Query: 223 ASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMAD 282
S+L G++ ++G+++H Y +R N++L TAL+D+Y+KC + A+++F+++
Sbjct: 214 VSILPTIGQANALHQGKAIHAYYIRNFFFDNVVLQTALLDMYAKCHLLFYARKIFNTVNK 273
Query: 283 RNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLT 342
+N VCW+AMI G+ +H + + L+ ++ + G ++P T ++ AC + L
Sbjct: 274 KNDVCWSAMIGGYVLHDSISDALALYDDML--CIYG--LNPTPATLATMLRACAQLTDLK 329
Query: 343 EGRKYFRQMI 352
G+K MI
Sbjct: 330 RGKKLHCHMI 339
Score = 95.1 bits (235), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 64/236 (27%), Positives = 113/236 (47%), Gaps = 16/236 (6%)
Query: 163 HVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTM 222
H+ ++ A +FD +P+ +VV WN+MI Y+ SG S+ L+ M++ G + T
Sbjct: 51 HISRNEIQLARHVFDQIPKPSVVLWNMMIRTYAWSGPFQQSIYLYLHMLQLGVTPTNFTF 110
Query: 223 ASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMA- 281
+L AC GR +H + L ++ + TAL+ +Y+KC + AQ +F+S++
Sbjct: 111 PFLLKACSSLQALQLGRLIHTHAHILGLSMDLYVSTALLHMYAKCGHLYQAQTLFNSISH 170
Query: 282 -DRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAEL 340
DR++V WNAMI H + I ++ AG ++P+ T + ++ +A
Sbjct: 171 QDRDIVAWNAMIAAFSFHALHAQTIH---SVAQMQQAG--VTPNSSTLVSILPTIGQANA 225
Query: 341 LTEGRKYFRQMIDFYKIK----PNFAHYWCMANLYAGAELTEEAEEILRKMPEDND 392
L +G+ I Y I+ N + ++YA L A +I + + ND
Sbjct: 226 LHQGKA-----IHAYYIRNFFFDNVVLQTALLDMYAKCHLLFYARKIFNTVNKKND 276
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 70/306 (22%), Positives = 130/306 (42%), Gaps = 34/306 (11%)
Query: 1 MKQLLQIQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIK 60
+K+ ++ H+I SG+ + + +L+ A G D V + T +A+I
Sbjct: 328 LKRGKKLHCHMIKSGMDLDTTVGN-SLISMYAKCGIMDNAVGFLDEMIAKDTVSYSAIIS 386
Query: 61 AYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDF 120
+ ++ ++ + QM +G P T ++L +C+ ++ G CHG + G
Sbjct: 387 GCVQNGYAEKALLIFRQMQSSGIAPYLETMIALLPACSHLAALQHGTCCHGYTVVRGFTN 446
Query: 121 ELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMP 180
+ + N++I+MY G + +R +F +M RD+ISWN+
Sbjct: 447 DTSICNAIIDMYSKCGKITISREIFDRMQNRDIISWNT---------------------- 484
Query: 181 ERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRS 240
MI GY G +L LF+E+ G + +D T+ +VL+AC S EG+
Sbjct: 485 ---------MIIGYGIHGLCVEALSLFQELQALGLKPDDVTLIAVLSACSHSGLVTEGKY 535
Query: 241 -VHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMA-DRNLVCWNAMILGHCIH 298
+ ++KP + ++DL ++ ++ A M N+ W A++ H
Sbjct: 536 WFSSMSQNFNIKPRMAHYICMVDLLARAGNLDEAYTFIQRMPFVPNVRIWGALLAACRTH 595
Query: 299 GKPEEG 304
E G
Sbjct: 596 KNIEMG 601
>gi|224129982|ref|XP_002320719.1| predicted protein [Populus trichocarpa]
gi|222861492|gb|EEE99034.1| predicted protein [Populus trichocarpa]
Length = 643
Score = 226 bits (577), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 165/582 (28%), Positives = 258/582 (44%), Gaps = 124/582 (21%)
Query: 6 QIQAHLITSGLFFNNSFWTINL-LKHSADFGSP--DYTVLVF-----------KCINNPG 51
QI A L+T+G F N+F T + L S +P ++ +F +
Sbjct: 33 QIHARLLTTG-FIKNTFLTTKIILSFSTSLHAPLIEFARFIFFRHHAFEFDEKEEEEEKD 91
Query: 52 TFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHG 111
F NA+IK YS+ P + + M++NG + +T + +C++ G V+ G HG
Sbjct: 92 PFLWNAIIKTYSHGHDPKEAMWLVSLMLENGAFADKFTLSLVLKACSRVGLVKEGMQIHG 151
Query: 112 LALKNGVDFELPVMNSLINMY---GCF----------------------------GAMDC 140
L K +L + N LI+ Y GC G +D
Sbjct: 152 LLKKLEFGSDLFLQNCLISFYVKCGCLVRASQVFDRMPKRDSVSYNSMIDGYVKGGRIDL 211
Query: 141 AR----------------------------------NMFVQMSPRDLISWNSIVSGHVRS 166
AR +F +M RDLISWNS++ G V+
Sbjct: 212 ARVVFDCIPLEERNLISWNSLIRGYAQSEDGILVAWQLFAKMPERDLISWNSMIDGCVKC 271
Query: 167 GDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREM----------MKSGFR 216
G M A LFD MP R++VSW MI GY+K+G + LF EM M G+
Sbjct: 272 GRMEDAQGLFDRMPNRDIVSWANMIDGYAKNGRVDIARSLFDEMPERDVVAYNAMMGGYV 331
Query: 217 GN----------------------DKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNI 254
N + T+ L+A + ++G ++H + +
Sbjct: 332 QNGYCMEALGIFYGMQSDGNFLLDNATLLIALSAIAQLGHIDKGVAIHRFIEEIGFSLDG 391
Query: 255 ILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNG 314
L ALID+YSKC +E A VF+++ ++++ WNA+I G IHG E +
Sbjct: 392 RLGVALIDMYSKCGSIENAMMVFENIKEKSVDHWNAIIGGLAIHGLGELAFDFLMEMERM 451
Query: 315 TVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGA 374
V PD+ITFIG++ AC A L+ EG F M +K++P HY CM ++ A
Sbjct: 452 RV-----EPDDITFIGLLNACGHAGLVKEGMMCFELMRRVHKVEPKLQHYGCMVDILGRA 506
Query: 375 ELTEEAEEILRKMP-EDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFS 433
EEA+ + +MP E ND ++W SLLS C+ + + + +A++ + +D S
Sbjct: 507 GHIEEAKNFVEEMPFEPND------VIWRSLLSACKTHESFNVGQPVAENLMRLDSPSPS 560
Query: 434 RYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLK 475
Y N+YA G+W DV +VR +MK++ + ++PGC ++L+
Sbjct: 561 SYVLASNMYAGLGKWNDVRKVRAMMKQKNLKKIPGCSWIELE 602
>gi|357496515|ref|XP_003618546.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355493561|gb|AES74764.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 637
Score = 226 bits (577), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 148/471 (31%), Positives = 246/471 (52%), Gaps = 24/471 (5%)
Query: 6 QIQAHLITSGLFFNNSFWTINLLKHSADFGS---PDYTVLVFKCINNPGTFCVNAVIKAY 62
Q+ A I +GL + + + N L H +GS P + +F I P + + A
Sbjct: 41 QLHATAIVTGLISSPNHFLRNALLHL--YGSCSLPSHARKLFDEI--PQSHKDSVDYTAL 96
Query: 63 SNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGC--VERGGMCHGLALKNG-VD 119
C P + + ++QM + + V +CA+ G + G H +K G V
Sbjct: 97 IRHCPPFESLKLFIQMRQFDLPLDGVVMVCALNACARLGGGDTKVGSQMHVGVVKFGFVK 156
Query: 120 FELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIM 179
F+ V N+L+N+Y FG + AR MF + R ++SW+ + G V+ + + LFD M
Sbjct: 157 FD-KVCNALMNVYVKFGLVGEARKMFEGIEVRSVVSWSCFLEGLVKWESVESGRVLFDEM 215
Query: 180 PERNVVSWNIMISGYSKSGNPGCSLKLFREMM-KSGFRGNDKTMASVLTACGRSARFNEG 238
PERN V+W +MI GY +G + L +EM+ GFR + T+ SVL+AC +S G
Sbjct: 216 PERNEVAWTVMIVGYVGNGFTKEAFLLLKEMVFGCGFRLSFVTLCSVLSACSQSGDVCVG 275
Query: 239 RSVHGYTVRT-SLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCI 297
R VH Y V+ L +++ T+L+D+Y+KC ++ A VF SM RN+V WNAM+ G +
Sbjct: 276 RWVHCYAVKEMGLDFGVMVGTSLVDMYAKCGRINAALSVFRSMLKRNVVAWNAMLGGLAM 335
Query: 298 HGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKI 357
HG + + +F ++V + PD +TF+ ++ AC + L+ +G YF + Y+I
Sbjct: 336 HGMGKIAVDMFPSMVE------EVKPDGVTFMALLSACSHSGLVEKGWDYFHDLEPVYRI 389
Query: 358 KPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMV 417
KP HY CM L A EEAE +++ M + ++ SL+ C G + +
Sbjct: 390 KPEIEHYACMVGLLGRAGRLEEAEIMVKNM-----RIPPNEVVLGSLIGSCYAHGRLQLG 444
Query: 418 ERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPG 468
E++ + ++MDP + + L N+YA++G+ E +R+++KKR + ++PG
Sbjct: 445 EKIMRDLLEMDPLNTEYHIVLSNMYALSGKVEKANSLRQVLKKRGIKKVPG 495
>gi|356573508|ref|XP_003554900.1| PREDICTED: pentatricopeptide repeat-containing protein At5g15340,
mitochondrial-like [Glycine max]
Length = 629
Score = 226 bits (577), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 140/470 (29%), Positives = 240/470 (51%), Gaps = 22/470 (4%)
Query: 6 QIQAHLITSGLFFNNSFWTINLLKH-SADFGSPDYTVLVFKCINNPGTFCVN--AVIKAY 62
Q+ A SGL F+ S + +N L H A P + +F I + V+ A+I+
Sbjct: 33 QLHAAATVSGLLFSPSSFLLNALLHLYASCPLPSHARKLFDRIPHSHKDSVDYTALIRCS 92
Query: 63 SNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFEL 122
P + FYLQM + + + G+C+K G H +K G
Sbjct: 93 H----PLDALRFYLQMRQRALPLDGVALICALGACSKLGDSNLVPQMHVGVVKFGFLRHT 148
Query: 123 PVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPER 182
V+N +++ Y G + AR +F ++ ++SW ++ G V+ + + +FD MPER
Sbjct: 149 KVLNGVMDGYVKCGLVGEARRVFEEIEEPSVVSWTVVLEGVVKCEGVESGKVVFDEMPER 208
Query: 183 NVVSWNIMISGYSKSGNPGCSLKLFREMMKS---GFRGNDKTMASVLTACGRSARFNEGR 239
N V+W ++I GY SG + L +EM+ GF N T+ SVL+AC +S + GR
Sbjct: 209 NEVAWTVLIKGYVGSGFTKEAFLLLKEMVFGCGFGFGLNSITLCSVLSACSQSGDVSVGR 268
Query: 240 SVHGYTVR-TSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIH 298
VH Y V+ +++ T+L+D+Y+KC ++ A VF M RN+V WNAM+ G +H
Sbjct: 269 WVHCYAVKAVGWDLGVMVGTSLVDMYAKCGRISAALMVFRHMPRRNVVAWNAMLCGLAMH 328
Query: 299 GKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIK 358
G + +++F +V + PD +TF+ ++ +C + L+ +G +YF + Y I+
Sbjct: 329 GMGKVVVEMFACMVE------EVKPDAVTFMALLSSCSHSGLVEQGWQYFHDLERAYGIR 382
Query: 359 PNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVE 418
P HY CM +L A EEAE++++K+P + ++ SLL C G + + E
Sbjct: 383 PEIEHYACMVDLLGRAGRLEEAEDLVKKLP-----IPPNEVVLGSLLGACYAHGKLRLGE 437
Query: 419 RLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPG 468
++ + V MDP + + L N+YA+ G+ + +R+++K R + ++PG
Sbjct: 438 KIMRELVQMDPLNTEYHILLSNMYALCGKADKANSLRKVLKNRGIRKVPG 487
>gi|356518777|ref|XP_003528054.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g29230-like [Glycine max]
Length = 737
Score = 226 bits (577), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 131/472 (27%), Positives = 241/472 (51%), Gaps = 21/472 (4%)
Query: 7 IQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSNSC 66
+ HLI + LFF+ +F L+ + G + F + N T N +I YS +
Sbjct: 32 VHGHLIKTALFFD-AFLANGLIDAYSKCGCEESAHKTFGDLPNKTTRSWNTLISFYSKTG 90
Query: 67 VPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMN 126
D+ + +M + N ++ SL +G ++ HG+A+ G+++ + + N
Sbjct: 91 FFDEAHNLFDKMPQR----NVVSYNSLI-----SGNLQWLRQVHGVAVIVGMEWNVILNN 141
Query: 127 SLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVS 186
+LI+ YG G + + ++F M R+++SW S+V + R+ + A +F MP +N VS
Sbjct: 142 ALIDAYGKCGEPNLSFSVFCYMPERNVVSWTSMVVAYTRACRLDEACRVFKDMPVKNTVS 201
Query: 187 WNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTV 246
W +++G+ ++G + +F++M++ G R + T SV+ AC + A G+ VHG +
Sbjct: 202 WTALLTGFVRNGGCDEAFDVFKQMLEEGVRPSAPTFVSVIDACAQEALIGRGKQVHGQII 261
Query: 247 RTSLKP---NIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEE 303
R N+ + ALID+Y+KC ++ A+ +F+ R++V WN +I G +G EE
Sbjct: 262 RGDKSGNLFNVYVCNALIDMYAKCGDMKSAENLFEMAPMRDVVTWNTLITGFAQNGHGEE 321
Query: 304 GIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAH 363
+ +F ++ V P+ +TF+GV+ C A L EG + M Y +KP H
Sbjct: 322 SLAVFRRMIEAKV-----EPNHVTFLGVLSGCNHAGLDNEGLQLVDLMERQYGVKPKAEH 376
Query: 364 YWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKS 423
Y + +L EA ++ K+P D + +W ++L CR G + + + A+
Sbjct: 377 YALLIDLLGRRNRLMEAMSLIEKVP---DGIKNHIAVWGAVLGACRVHGNLDLARKAAEK 433
Query: 424 FVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLK 475
+++P++ RY L N+YA +G+W R+R +MK+R + + P C ++L+
Sbjct: 434 LFELEPENTGRYVMLANIYAASGKWGGAKRIRNVMKERCLEKEPACSRIELR 485
Score = 116 bits (291), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 90/339 (26%), Positives = 144/339 (42%), Gaps = 68/339 (20%)
Query: 78 MIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGA 137
M+ N + + + L C V+ HG +K + F+ + N LI+ Y G
Sbjct: 1 MLPNDVISSVEKYSFLISKCITARRVKLANAVHGHLIKTALFFDAFLANGLIDAYSKCGC 60
Query: 138 MDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKS 197
+ A F + + SWN+++S + ++G AH LFD MP+RNVVS+N +ISG
Sbjct: 61 EESAHKTFGDLPNKTTRSWNTLISFYSKTGFFDEAHNLFDKMPQRNVVSYNSLISG---- 116
Query: 198 GNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILD 257
+L+ R+ VHG V ++ N+IL+
Sbjct: 117 -----NLQWLRQ-------------------------------VHGVAVIVGMEWNVILN 140
Query: 258 TALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLF--------- 308
ALID Y KC + ++ VF M +RN+V W +M++ + + +E ++F
Sbjct: 141 NALIDAYGKCGEPNLSFSVFCYMPERNVVSWTSMVVAYTRACRLDEACRVFKDMPVKNTV 200
Query: 309 --TALVNGTVAGG---------------SISPDEITFIGVICACVRAELLTEGRKYFRQM 351
TAL+ G V G + P TF+ VI AC + L+ G++ Q+
Sbjct: 201 SWTALLTGFVRNGGCDEAFDVFKQMLEEGVRPSAPTFVSVIDACAQEALIGRGKQVHGQI 260
Query: 352 IDFYKIKPNFAHYWCMA--NLYAGAELTEEAEEILRKMP 388
I K F Y C A ++YA + AE + P
Sbjct: 261 IRGDKSGNLFNVYVCNALIDMYAKCGDMKSAENLFEMAP 299
>gi|242096978|ref|XP_002438979.1| hypothetical protein SORBIDRAFT_10g029325 [Sorghum bicolor]
gi|241917202|gb|EER90346.1| hypothetical protein SORBIDRAFT_10g029325 [Sorghum bicolor]
Length = 723
Score = 226 bits (577), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 131/449 (29%), Positives = 231/449 (51%), Gaps = 18/449 (4%)
Query: 56 NAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALK 115
++I YS + P V + M+ +G P+ + +C+K +E G + H L K
Sbjct: 204 TSLIAGYSRAGRPADAVYCFNCMLSDGVEPDEVAVIGALSACSKLKNLEFGRLLHLLVGK 263
Query: 116 NGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSP-RDLISWNSIVSGHVRSGDMSAAHE 174
+ ++ +LI+MY G + A+ +F + + WN I+ G+ + G + A
Sbjct: 264 KRIQMTDKLVVTLIDMYAKCGDIAQAQAVFDAVGRGQKPEPWNVIIDGYCKLGHVDIARS 323
Query: 175 LFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSAR 234
LFD M R+V+++N MI+GY SG +L+LF ++ + G R ++ T+ S+LTAC
Sbjct: 324 LFDQMGARDVITFNSMITGYIHSGRLRDALQLFMQLRRHGMRADNFTVVSLLTACASLGA 383
Query: 235 FNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILG 294
+GR++H + ++ ++ L TAL+D+Y KC +V+ A VF M +R++ W+AMI G
Sbjct: 384 LPQGRALHASIEQRIVEEDVYLVTALVDMYMKCGRVDEATAVFHRMGERDVHTWSAMIAG 443
Query: 295 HCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDF 354
+G + ++ F + P +T+I V+ AC + LL EGR++F +M
Sbjct: 444 LAFNGMGMDALESFCQMKR-----DGFQPTSVTYIAVLTACSHSSLLNEGRQHFNEMRSL 498
Query: 355 YKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAV 414
+K+ P HY CM +L A + L +EA +++ MP M +++W S+LS CR +
Sbjct: 499 HKLHPQIEHYGCMIDLLARSGLLDEAMHLVQTMP-----MQPNAVIWASILSACRVHKNI 553
Query: 415 AMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDL 474
+ A+ + + P++ + Y L N+Y + QW + R+R LM+++ + + G + +
Sbjct: 554 DLARHAAEHLLKLAPEEDAVYVQLYNIYIDSRQWVEAKRIRMLMEEQGVKKTAGYSSITV 613
Query: 475 KEVVEKLKV---GHFWRGGMKEEVNKMME 500
V K V H W E+ MME
Sbjct: 614 AGQVHKFVVNDQSHPW----TLEIITMME 638
Score = 133 bits (334), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 111/453 (24%), Positives = 194/453 (42%), Gaps = 57/453 (12%)
Query: 1 MKQLLQIQAHLITSGLFFNNSFWTINLLKHSADFGSPD---YTVLVFKCINNPGTFCVNA 57
++Q Q+ A L TSG + L + +P Y + +F + +P TF +
Sbjct: 12 VRQASQLHAILTTSGRIAHRPSAEHLLNSLTNCLSAPRHLRYVLSLFDRLPHPTTFLHDT 71
Query: 58 VIKA-YSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKN 116
++A S D V+ +M + G +++TF +F CA M H L+
Sbjct: 72 ALRACLQASAGADHPVLILRRMRRGGVRMSAFTFHFVFRCCAAGAGAGLCRMLHAACLRT 131
Query: 117 GVDFELP-----VMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSA 171
LP V N LI+MY G D AR F ++ +D + W +++ G VR G +
Sbjct: 132 ----MLPSAARIVANPLIHMYASLGLTDDARRAFDEVPVKDAVVWATVIGGLVRWGLLDE 187
Query: 172 AHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGR 231
A L PERNVVSW +I+GYS++G P ++ F M+ G ++ + L+AC +
Sbjct: 188 ARRLLVQAPERNVVSWTSLIAGYSRAGRPADAVYCFNCMLSDGVEPDEVAVIGALSACSK 247
Query: 232 SARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKC----------------QK------ 269
GR +H + ++ L LID+Y+KC QK
Sbjct: 248 LKNLEFGRLLHLLVGKKRIQMTDKLVVTLIDMYAKCGDIAQAQAVFDAVGRGQKPEPWNV 307
Query: 270 ----------VEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGG 319
V++A+ +FD M R+++ +N+MI G+ G+ + ++LF L
Sbjct: 308 IIDGYCKLGHVDIARSLFDQMGARDVITFNSMITGYIHSGRLRDALQLFMQLRR-----H 362
Query: 320 SISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEE 379
+ D T + ++ AC L +GR I+ ++ + + ++Y +E
Sbjct: 363 GMRADNFTVVSLLTACASLGALPQGRA-LHASIEQRIVEEDVYLVTALVDMYMKCGRVDE 421
Query: 380 AEEILRKMPEDNDNMSFESIMWVSLLSLCRFQG 412
A + +M E + + W ++++ F G
Sbjct: 422 ATAVFHRMGERDVH------TWSAMIAGLAFNG 448
>gi|56783979|dbj|BAD81434.1| pentatricopeptide (PPR) repeat-containing protein -like [Oryza
sativa Japonica Group]
Length = 503
Score = 226 bits (577), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 127/392 (32%), Positives = 205/392 (52%), Gaps = 15/392 (3%)
Query: 110 HGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPR-DLISWNSIVSGHVRSGD 168
H L ++ G + SL+ Y G++ AR +F + + D++SWN ++ G+V+SGD
Sbjct: 98 HSLLVRAGHAADPHASASLVQAYCSCGSVASARRVFDETAASADVVSWNVMIDGYVKSGD 157
Query: 169 MSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTA 228
++ A ELFD+MP RNVVSW ++I Y++ P ++++FR M G + + SVL+A
Sbjct: 158 LARARELFDVMPGRNVVSWTMVIGAYAQMKQPEEAIEVFRRMQVEGIEPDGVALLSVLSA 217
Query: 229 CGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCW 288
CG + G VH + +R L I L A+ID+Y KC V+ A VF+ M +++V W
Sbjct: 218 CGDLGVVDLGEWVHRFVLRRGLCQEIPLMNAIIDMYVKCGSVKKALEVFEGMEQKSIVTW 277
Query: 289 NAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYF 348
MI G +HG E ++LF + V SP++ITF+ V+ C L GR YF
Sbjct: 278 TTMIAGFALHGLGLEAVELFRRMEKENV-----SPNDITFLAVLSVCSHVGLTDLGRWYF 332
Query: 349 RQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLC 408
+ M+ YKIKP HY CM +L A EA +++ MP + +W +LL+
Sbjct: 333 KTMVSQYKIKPRVEHYGCMIDLLGRAGCLMEARGLIQDMP-----FKANAAIWGALLAAA 387
Query: 409 RFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPG 468
R G + E+ ++++P + Y L N+YA +W+ V +R M+ R + +PG
Sbjct: 388 RTHGDTELGEQALLHLIELEPHNSGNYILLSNIYAEQERWDAVRELRISMRDRGLRNVPG 447
Query: 469 CRLVDLKEVVEKLKVGHFWRGGMKEEVNKMME 500
+D+ +V + R G ++K+ E
Sbjct: 448 ASSIDVDGMVHEFTS----RDGSHPSLHKIRE 475
Score = 81.6 bits (200), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 62/268 (23%), Positives = 113/268 (42%), Gaps = 35/268 (13%)
Query: 50 PGTFCVN--AVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGG 107
PG V+ VI AY+ P++ + + +M G P+ +S+ +C G V+ G
Sbjct: 169 PGRNVVSWTMVIGAYAQMKQPEEAIEVFRRMQVEGIEPDGVALLSVLSACGDLGVVDLGE 228
Query: 108 MCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSG 167
H L+ G+ E+P+MN++I+MY G++ A +F M + +++W +++
Sbjct: 229 WVHRFVLRRGLCQEIPLMNAIIDMYVKCGSVKKALEVFEGMEQKSIVTWTTMI------- 281
Query: 168 DMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLT 227
+G++ G +++LFR M K ND T +VL+
Sbjct: 282 ------------------------AGFALHGLGLEAVELFRRMEKENVSPNDITFLAVLS 317
Query: 228 ACGRSARFNEGRSVHGYTV-RTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADR-NL 285
C + GR V + +KP + +IDL + + A+ + M + N
Sbjct: 318 VCSHVGLTDLGRWYFKTMVSQYKIKPRVEHYGCMIDLLGRAGCLMEARGLIQDMPFKANA 377
Query: 286 VCWNAMILGHCIHGKPEEGIKLFTALVN 313
W A++ HG E G + L+
Sbjct: 378 AIWGALLAAARTHGDTELGEQALLHLIE 405
>gi|212723118|ref|NP_001131685.1| hypothetical protein [Zea mays]
gi|194692242|gb|ACF80205.1| unknown [Zea mays]
gi|414879040|tpg|DAA56171.1| TPA: hypothetical protein ZEAMMB73_730680 [Zea mays]
Length = 590
Score = 226 bits (577), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 145/539 (26%), Positives = 245/539 (45%), Gaps = 82/539 (15%)
Query: 4 LLQIQAHLITSGLFFNNSFW-TINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAY 62
LL HL S L +N + + +A + L +P F N I+ +
Sbjct: 32 LLLTSGHLAASPLRLSNHLLLALASVPSAAALADVVFARLPLPAARDP--FAWNTAIRLH 89
Query: 63 SNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFEL 122
+ + P ++++ +M + G P++YTF ++ +C G + H A++ G+ +L
Sbjct: 90 APA-RPRAALLYFARMRRCGVRPDAYTFPAVLKACGCAPGCRAGLLVHAEAVRRGLAADL 148
Query: 123 PVMNSLINMY----------------------------------GCFGAMDCARNMFVQ- 147
+N+LI+ Y GC G M A+ MF +
Sbjct: 149 FTVNALISFYCRILDIRSGRKVFDEAGGVSRDLVSWNSMVAGYVGC-GEMGLAQEMFDEM 207
Query: 148 --------------------------------MSPRDLISWNSIVSGHVRSGDMSAAHEL 175
M RDL+ WNS++ G+ R G M A L
Sbjct: 208 PQKDTFSWATLIDGYGKQGGAGVDRARELFDQMPERDLVCWNSMIDGYARHGRMDEARSL 267
Query: 176 FDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARF 235
F+ MPERNV+SW+I+I G+ G +L+ F+ M++ G R + ++AC +
Sbjct: 268 FEEMPERNVISWSIVIDGHVSCGEAKEALEYFQSMLRCGLRPDRIAAVGAVSACAQLGAL 327
Query: 236 NEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGH 295
+GR +H Y + L ++++ TALID+Y KC +++A +F+SMA+R++V WN MI+G
Sbjct: 328 EQGRWLHSYLEKKKLLSDVVVQTALIDMYVKCGCLDLAMLIFESMAERSVVTWNVMIVGL 387
Query: 296 CIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFY 355
HG + + LF + S++ D+++ +G++ AC A L++EG + F +M +
Sbjct: 388 GTHGFGLDAVTLFHRM-----EAESVAVDDLSVLGMLTACTHAGLVSEGLEIFHRMKKDF 442
Query: 356 KIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVA 415
I P HY + +L A ++A + MP M +W SLL+ CR V
Sbjct: 443 GIDPKVEHYGALVDLLGRAGRLDQARHAIETMP-----MEPTPELWGSLLAACRSHSCVE 497
Query: 416 MVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDL 474
+ E + D+ D Y L N+YA G W DV R+R+LM M + G ++++
Sbjct: 498 LAELSVERLADLGADDSGVYVLLSNIYADEGMWGDVLRIRKLMSDEGMRKDIGRSVIEV 556
>gi|226531396|ref|NP_001147435.1| methyltransferase small domain [Zea mays]
gi|195611352|gb|ACG27506.1| methyltransferase small domain [Zea mays]
Length = 601
Score = 226 bits (576), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 133/466 (28%), Positives = 234/466 (50%), Gaps = 13/466 (2%)
Query: 6 QIQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSNS 65
Q+ AH++ SGL + + +L+K D G + L+F+ T N ++ Y N
Sbjct: 142 QVHAHVVVSGLH-SRVYLRNSLIKMYIDAGDVETAELMFRSALVLDTVSCNIMLSGYVNE 200
Query: 66 CVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALK--NGVDFELP 123
+ + F+ M G + + YT V+L C + G HG+ ++ + D L
Sbjct: 201 GCTLKALWFFRDMASRGIVVDQYTAVALLTCCGRLKNELIGRSVHGVIVRRMDAGDHGLI 260
Query: 124 VMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERN 183
++N+L++MY G M+ A+ +F + +D ISWN++VSG V +G + A F P R+
Sbjct: 261 LVNALLDMYAKCGRMNAAKTIFGEAGEKDAISWNTMVSGFVNAGMLDLASRFFSEAPSRD 320
Query: 184 VVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHG 243
++SWN +++GY++ +KLF +M+ S + T ++++A N +SVHG
Sbjct: 321 LISWNALLAGYARYKGFNEVMKLFHDMLASCVNLDKVTAVTLISAAAGKGSLNHAKSVHG 380
Query: 244 YTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEE 303
+ V+ + L +AL+D+Y KC V++A VF+ D+++ W AMI G +G E
Sbjct: 381 WVVKEFGHQDAFLASALVDMYCKCGNVKIAYYVFEKALDKDVTLWTAMISGLAFNGHGTE 440
Query: 304 GIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAH 363
++LF + VA P+ +T + V+ AC + LL EG K F M Y I+P H
Sbjct: 441 ALELFWKMQTEVVA-----PNGVTLLAVLSACSHSGLLDEGCKIFDAMKQRYSIEPGIEH 495
Query: 364 YWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKS 423
+ CM +L A + +A + R+M M +W S+L+ + + E +K
Sbjct: 496 FGCMVDLLARSGRLIDALALARRM-----QMRPSRSIWGSILNASLAGQNIEVAEIASKE 550
Query: 424 FVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGC 469
+ +DP + Y L N++A G W +VR+ M+++ + ++ G
Sbjct: 551 LLRLDPAEEGGYVLLSNLHAAGGHWNHSDKVRQNMERKGLRKLAGA 596
Score = 96.3 bits (238), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 91/357 (25%), Positives = 148/357 (41%), Gaps = 58/357 (16%)
Query: 7 IQAHLITSGLFFNNSFWTINLLKHSADFGSPDYT---VLVFKCIN-NPGTFCVNAVIKAY 62
I AHL+ GL +F LL ++ SP T L+F+ P + N ++ A
Sbjct: 39 ILAHLLRLGLAME-TFPMSRLLHYATVVSSPRLTREAELLFQHFTPRPNLYIYNLMLSAA 97
Query: 63 SNSCVP--DQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDF 120
+ Q Y M+ + +P+ TF++L S + G H + +G+
Sbjct: 98 AARDSSSSPQAAALYRSMLASSVLPDQQTFLALLRSVEH---LSAGRQVHAHVVVSGLHS 154
Query: 121 ELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMP 180
+ + NSLI MY G ++ A MF D +S N ++SG+V
Sbjct: 155 RVYLRNSLIKMYIDAGDVETAELMFRSALVLDTVSCNIMLSGYV---------------- 198
Query: 181 ERNVVSWNIMISGYSKSGNPGCSLK---LFREMMKSGFRGNDKTMASVLTACGRSARFNE 237
N GC+LK FR+M G + T ++LT CGR
Sbjct: 199 ------------------NEGCTLKALWFFRDMASRGIVVDQYTAVALLTCCGRLKNELI 240
Query: 238 GRSVHGYTVR--TSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGH 295
GRSVHG VR + +IL AL+D+Y+KC ++ A+ +F +++ + WN M+ G
Sbjct: 241 GRSVHGVIVRRMDAGDHGLILVNALLDMYAKCGRMNAAKTIFGEAGEKDAISWNTMVSGF 300
Query: 296 CIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMI 352
G + + F+ + S D I++ ++ R + E K F M+
Sbjct: 301 VNAGMLDLASRFFSE---------APSRDLISWNALLAGYARYKGFNEVMKLFHDML 348
>gi|224114351|ref|XP_002332376.1| predicted protein [Populus trichocarpa]
gi|222832200|gb|EEE70677.1| predicted protein [Populus trichocarpa]
Length = 660
Score = 226 bits (576), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 144/497 (28%), Positives = 244/497 (49%), Gaps = 46/497 (9%)
Query: 6 QIQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSNS 65
QI H G F ++++ L+ ++ G VF + + +I ++
Sbjct: 106 QIHCHSTKLG-FASDTYAQNTLMNMYSNCGCLVSARKVFDKMEDKTVVSWATMIGVHAQW 164
Query: 66 CVPDQGVVFYLQMIKN-GFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPV 124
P++ V + +M+K+ PN T V++ +CA+ LA+ +
Sbjct: 165 DQPNEAVRLFDRMMKSENVKPNEVTLVNVLTACARA---------RDLAM-------VKR 208
Query: 125 MNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNV 184
++ I+ +G FG R ++ ++ + + G + A +LFD E+N+
Sbjct: 209 IHEYIDEHG-FG--------------RHVVLNTVLMDVYCKCGCVQLARDLFDKAQEKNL 253
Query: 185 VSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGY 244
SWNIMI+G+ + N +L LFREM G +G+ TMAS+L AC G+ +H Y
Sbjct: 254 FSWNIMINGHVEDSNYEEALLLFREMQTKGIKGDKVTMASLLLACTHLGALELGKWLHAY 313
Query: 245 TVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEG 304
+ + ++ L TAL+D+Y+KC +E A +VF M +++++ W A+ILG + G+ E
Sbjct: 314 IKKQRIDVDVALGTALVDMYAKCGSIETAIQVFHEMPEKDVMTWTALILGLAMCGQAENA 373
Query: 305 IKLFTAL-VNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAH 363
++ F + + G + PD ITF+GV+ AC A + EG +F M D Y I+P H
Sbjct: 374 LQYFDEMHIKG------VKPDAITFVGVLAACSHAGFVDEGISHFNSMSDTYGIQPTIEH 427
Query: 364 YWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKS 423
Y + ++ A EAEE+++ MP M+ + + LL CR G + ER AK
Sbjct: 428 YGGLVDILGRAGRIAEAEELIKSMP-----MAPDQFVLGGLLGACRIHGNLEAAERAAKQ 482
Query: 424 FVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLKEVVEKLKV 483
+++DP Y L N+Y + +WE+ R RELM +R M + PGC +++ VV +
Sbjct: 483 LLEIDPYHSGTYVLLSNIYKSSKKWEEAKRTRELMAERGMRKPPGCSQIEVHGVVHEFVK 542
Query: 484 GHFWRGGMKEEVNKMME 500
G E+N+M+E
Sbjct: 543 GDSSH-RQSSEINEMLE 558
Score = 172 bits (435), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 113/403 (28%), Positives = 195/403 (48%), Gaps = 45/403 (11%)
Query: 1 MKQLLQIQAHLITSGLFFNNSFWTINLLKHSA--DFGSPDYTVLVFKCINNPGTFCVNAV 58
M QL QI A ++ +GLFF+ F ++ + + GS Y LVF I NP ++ N++
Sbjct: 1 MSQLKQIHAQMLRTGLFFD-PFTASKIVAFCSLQESGSLQYARLVFSQIPNPTSYTCNSI 59
Query: 59 IKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGV 118
I+ ++ + + ++FY +M+ G +P+ YTF SLF SC + G H + K G
Sbjct: 60 IRGCTDKNLHQEALLFYQEMMVQGLIPDRYTFPSLFKSCRNSS---EGKQIHCHSTKLGF 116
Query: 119 DFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDI 178
+ N+L+NMY G + AR +F +M + ++SW +++ H +
Sbjct: 117 ASDTYAQNTLMNMYSNCGCLVSARKVFDKMEDKTVVSWATMIGVHAQ------------- 163
Query: 179 MPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKS-GFRGNDKTMASVLTACGRSARFNE 237
W+ P +++LF MMKS + N+ T+ +VLTAC R+
Sbjct: 164 --------WD----------QPNEAVRLFDRMMKSENVKPNEVTLVNVLTACARARDLAM 205
Query: 238 GRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCI 297
+ +H Y +++L+T L+D+Y KC V++A+ +FD ++NL WN MI GH
Sbjct: 206 VKRIHEYIDEHGFGRHVVLNTVLMDVYCKCGCVQLARDLFDKAQEKNLFSWNIMINGHVE 265
Query: 298 HGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKI 357
EE + LF + + G D++T ++ AC L G K+ I +I
Sbjct: 266 DSNYEEALLLFREMQTKGIKG-----DKVTMASLLLACTHLGALELG-KWLHAYIKKQRI 319
Query: 358 KPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIM 400
+ A + ++YA E A ++ +MPE D M++ +++
Sbjct: 320 DVDVALGTALVDMYAKCGSIETAIQVFHEMPE-KDVMTWTALI 361
>gi|242065790|ref|XP_002454184.1| hypothetical protein SORBIDRAFT_04g026300 [Sorghum bicolor]
gi|241934015|gb|EES07160.1| hypothetical protein SORBIDRAFT_04g026300 [Sorghum bicolor]
Length = 530
Score = 226 bits (576), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 142/496 (28%), Positives = 251/496 (50%), Gaps = 26/496 (5%)
Query: 3 QLLQIQAHLITSGLFFNNSFWTINLLKHSA-DFGSPDYTVLVFKCINNPGTFCVNAVIKA 61
L Q+ AH +G + T +L++ +A Y +F +P F +A++ A
Sbjct: 24 HLEQLHAHAFVAGRAAAQTT-TFHLIRFAAFRLSCLTYARHLFDATPHPSVFLYSAILSA 82
Query: 62 YSNSCVPDQGVV-----------FYLQMIKNGF-MPNSYTFVSLFGSCAKTGCVERGGMC 109
Y ++ +L+M+++G PN + + + + + G V
Sbjct: 83 YVSAAATASSYAHAHAHARDALALFLRMLRHGRPAPNQFVYPLVLRAASGVG-VGIVKSI 141
Query: 110 HGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDM 169
H A K+G + S+++ Y G M AR +F ++ R+++SW ++VSG+ R+G +
Sbjct: 142 HSHACKSGFCGHDIIRTSVLDGYSRHGMMADARKLFDGLTERNVVSWTALVSGYARAGKV 201
Query: 170 SAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTAC 229
A LF+ MPER+V +WN +I+G S++G ++ +F M+ +GFR N T++ VL+AC
Sbjct: 202 GDAIVLFERMPERDVAAWNAIIAGCSQNGLFVEAVGIFGRMVGAGFRPNATTVSCVLSAC 261
Query: 230 GRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWN 289
G G+ +H Y RT + + LID+Y KC +E A+ +FD ++DR+L WN
Sbjct: 262 GHLGMLKIGKLIHCYAWRTCVGFGSSVLNGLIDMYGKCGNLEGARWIFDEVSDRSLTTWN 321
Query: 290 AMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFR 349
++I +HG + I +F + G + PD +TF+G++ AC + EG +YF
Sbjct: 322 SLINCLALHGHSKCAISVFNEM-----RGEGVEPDVVTFVGLLNACTHGGFVDEGIRYFE 376
Query: 350 QMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCR 409
M + I+P HY C+ +L A ++A ++ M + D +MW SLL+ CR
Sbjct: 377 LMQHEHGIEPEIEHYGCIIDLLGRAGRFQDALNVISDMRIEADE-----VMWGSLLNACR 431
Query: 410 FQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMG-RMPG 468
V E + +++DP + + L NVY+ G WE+V +VR+ +K+ +G ++PG
Sbjct: 432 VHRQVEFAELAIRKLLELDPNNANYVVMLANVYSEGGLWEEVRKVRKFVKEENIGKKLPG 491
Query: 469 CRLVDLKEVVEKLKVG 484
C +++ + G
Sbjct: 492 CSWIEVDRKTHRFYSG 507
>gi|334185294|ref|NP_187883.2| mitochondrial editing factor 22 [Arabidopsis thaliana]
gi|75274142|sp|Q9LTV8.1|PP224_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g12770
gi|11994419|dbj|BAB02421.1| selenium-binding protein-like [Arabidopsis thaliana]
gi|332641723|gb|AEE75244.1| mitochondrial editing factor 22 [Arabidopsis thaliana]
Length = 694
Score = 226 bits (576), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 161/580 (27%), Positives = 275/580 (47%), Gaps = 95/580 (16%)
Query: 3 QLLQIQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAY 62
QL QI A L+ GL F+ F L+ S+ FG + VF + P F NA+I+ Y
Sbjct: 36 QLKQIHARLLVLGLQFSG-FLITKLIHASSSFGDITFARQVFDDLPRPQIFPWNAIIRGY 94
Query: 63 SNS-----------------CVPDQ------------------GVVFYLQMIKNGFMPNS 87
S + PD G + Q+ + GF +
Sbjct: 95 SRNNHFQDALLMYSNMQLARVSPDSFTFPHLLKACSGLSHLQMGRFVHAQVFRLGFDADV 154
Query: 88 YT---FVSLFGSCAKTGCVERGGMCHGLAL----------------KNGVDFE-LPVMN- 126
+ ++L+ C + G + GL L +NG E L + +
Sbjct: 155 FVQNGLIALYAKCRRLGSART--VFEGLPLPERTIVSWTAIVSAYAQNGEPMEALEIFSQ 212
Query: 127 --------------SLINMYGCFGAMDCARN-------MFVQMSPRDLISWNSIVSGHVR 165
S++N + C + R+ M +++ P LIS N++ + +
Sbjct: 213 MRKMDVKPDWVALVSVLNAFTCLQDLKQGRSIHASVVKMGLEIEPDLLISLNTM---YAK 269
Query: 166 SGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASV 225
G ++ A LFD M N++ WN MISGY+K+G ++ +F EM+ R + ++ S
Sbjct: 270 CGQVATAKILFDKMKSPNLILWNAMISGYAKNGYAREAIDMFHEMINKDVRPDTISITSA 329
Query: 226 LTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNL 285
++AC + + RS++ Y R+ + ++ + +ALID+++KC VE A+ VFD DR++
Sbjct: 330 ISACAQVGSLEQARSMYEYVGRSDYRDDVFISSALIDMFAKCGSVEGARLVFDRTLDRDV 389
Query: 286 VCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGR 345
V W+AMI+G+ +HG+ E I L+ A+ G V P+++TF+G++ AC + ++ EG
Sbjct: 390 VVWSAMIVGYGLHGRAREAISLYRAMERGGV-----HPNDVTFLGLLMACNHSGMVREGW 444
Query: 346 KYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLL 405
+F +M D +KI P HY C+ +L A ++A E+++ MP + +W +LL
Sbjct: 445 WFFNRMAD-HKINPQQQHYACVIDLLGRAGHLDQAYEVIKCMP-----VQPGVTVWGALL 498
Query: 406 SLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGR 465
S C+ V + E A+ +DP + Y L N+YA A W+ VA VR MK++ + +
Sbjct: 499 SACKKHRHVELGEYAAQQLFSIDPSNTGHYVQLSNLYAAARLWDRVAEVRVRMKEKGLNK 558
Query: 466 MPGCRLVDLKEVVEKLKVGHFWRGGMKEEVNKMMECRQSR 505
GC V+++ +E +VG EE+ + +E +SR
Sbjct: 559 DVGCSWVEVRGRLEAFRVGDK-SHPRYEEIERQVEWIESR 597
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 82/394 (20%), Positives = 150/394 (38%), Gaps = 75/394 (19%)
Query: 1 MKQLLQIQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIK 60
+KQ I A ++ GL I+L A G ++F + +P NA+I
Sbjct: 238 LKQGRSIHASVVKMGLEIEPDL-LISLNTMYAKCGQVATAKILFDKMKSPNLILWNAMIS 296
Query: 61 AYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDF 120
Y+ + + + + +MI P++ + S +CA+ G +E+ + ++
Sbjct: 297 GYAKNGYAREAIDMFHEMINKDVRPDTISITSAISACAQVGSLEQARSMYEYVGRSDYRD 356
Query: 121 ELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMP 180
++ + ++LI+M+ G+++ AR +F + RD++ W++
Sbjct: 357 DVFISSALIDMFAKCGSVEGARLVFDRTLDRDVVVWSA---------------------- 394
Query: 181 ERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRS 240
MI GY G ++ L+R M + G ND T +L AC S EG
Sbjct: 395 ---------MIVGYGLHGRAREAISLYRAMERGGVHPNDVTFLGLLMACNHSGMVREGWW 445
Query: 241 VHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGK 300
+ P +IDL + ++ A V C+ +
Sbjct: 446 FFNRMADHKINPQQQHYACVIDLLGRAGHLDQAYEVIK-----------------CMPVQ 488
Query: 301 PEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKP- 359
P G+ ++ AL++ AC + + G +Q+ + I P
Sbjct: 489 P--GVTVWGALLS--------------------ACKKHRHVELGEYAAQQL---FSIDPS 523
Query: 360 NFAHYWCMANLYAGAELTEEAEEILRKMPEDNDN 393
N HY ++NLYA A L + E+ +M E N
Sbjct: 524 NTGHYVQLSNLYAAARLWDRVAEVRVRMKEKGLN 557
Score = 42.0 bits (97), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 32/128 (25%), Positives = 60/128 (46%), Gaps = 8/128 (6%)
Query: 218 NDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVF 277
+D AS++ + A+ + +H + L+ + L T LI S + A++VF
Sbjct: 20 SDSFYASLIDSATHKAQLKQ---IHARLLVLGLQFSGFLITKLIHASSSFGDITFARQVF 76
Query: 278 DSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVR 337
D + + WNA+I G+ + ++ + +++ N +A +SPD TF ++ AC
Sbjct: 77 DDLPRPQIFPWNAIIRGYSRNNHFQDALLMYS---NMQLA--RVSPDSFTFPHLLKACSG 131
Query: 338 AELLTEGR 345
L GR
Sbjct: 132 LSHLQMGR 139
>gi|87240913|gb|ABD32771.1| Tetratricopeptide-like helical [Medicago truncatula]
Length = 497
Score = 226 bits (576), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 126/414 (30%), Positives = 221/414 (53%), Gaps = 34/414 (8%)
Query: 75 YLQMIKNGFMPNSYTFVSLFGSCAKT---GCVERGGMCHGLALKNGVDF-ELPVMNSLIN 130
++QM++ PN T ++L +CA + + G H A K+G ++ V +LI+
Sbjct: 75 FIQMLEAEVEPNHITLITLLSACAHSPSKTSITFGAALHTHAFKHGFAMNDVMVGTALID 134
Query: 131 MYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIM 190
MY G +D AR +F QM R+L+SWN+++ G++++GD+ A +LFD +P +NVVSW ++
Sbjct: 135 MYAKCGKLDYARLVFDQMGVRNLVSWNTMIDGYMKNGDVDDALKLFDKLPVKNVVSWTVV 194
Query: 191 ISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSL 250
I G+ K +L+ FREM +G + T+ ++++AC G VH ++
Sbjct: 195 IGGFVKKECYEEALECFREMQLAGVVPDFVTVIAIISACANLGALGLGLWVHRLVMKKEF 254
Query: 251 KPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTA 310
+ N+ + +LID+Y++C +E+A++VFD M+ RNLV WN++I+G ++G ++ + F
Sbjct: 255 RDNVKVLNSLIDMYARCGCIELARQVFDGMSQRNLVSWNSIIVGFAVNGLADKALSFF-- 312
Query: 311 LVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANL 370
C A L+ EG K F + ++ P HY C+ +L
Sbjct: 313 -----------------------PCSHAGLIDEGLKIFADIKRDHRNSPRIEHYGCLVDL 349
Query: 371 YAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQ 430
Y+ A +EA ++++KMP M ++ SLL+ CR QG V + E++ K V++ P
Sbjct: 350 YSRAGRLKEAWDVIKKMP-----MMPNEVVLGSLLAACRTQGDVELAEKVMKYQVELYPG 404
Query: 431 DFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLKEVVEKLKVG 484
S Y N+YA G+W+ ++VR MK+R + + +++ + K G
Sbjct: 405 GDSNYVLFSNIYAAVGKWDGASKVRREMKERGLQKNLAFSSIEIDSGIHKFVSG 458
Score = 69.7 bits (169), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 80/331 (24%), Positives = 126/331 (38%), Gaps = 57/331 (17%)
Query: 7 IQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAY-SNS 65
+ H G N+ L+ A G DY LVF + N +I Y N
Sbjct: 112 LHTHAFKHGFAMNDVMVGTALIDMYAKCGKLDYARLVFDQMGVRNLVSWNTMIDGYMKNG 171
Query: 66 CVPDQGVVFYLQMIKN------------------------------GFMPNSYTFVSLFG 95
V D +F +KN G +P+ T +++
Sbjct: 172 DVDDALKLFDKLPVKNVVSWTVVIGGFVKKECYEEALECFREMQLAGVVPDFVTVIAIIS 231
Query: 96 SCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLIS 155
+CA G + G H L +K + V+NSLI+MY G ++ AR +F MS R+L+S
Sbjct: 232 ACANLGALGLGLWVHRLVMKKEFRDNVKVLNSLIDMYARCGCIELARQVFDGMSQRNLVS 291
Query: 156 WNSIVSGHVRSGDMSAAHELF----------------DIMPE-RN---VVSWNIMISGYS 195
WNSI+ G +G A F DI + RN + + ++ YS
Sbjct: 292 WNSIIVGFAVNGLADKALSFFPCSHAGLIDEGLKIFADIKRDHRNSPRIEHYGCLVDLYS 351
Query: 196 KSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNII 255
++G + + ++M N+ + S+L AC V Y V L P
Sbjct: 352 RAGRLKEAWDVIKKM---PMMPNEVVLGSLLAACRTQGDVELAEKVMKYQVE--LYPGGD 406
Query: 256 LDTALI-DLYSKCQKVEVAQRVFDSMADRNL 285
+ L ++Y+ K + A +V M +R L
Sbjct: 407 SNYVLFSNIYAAVGKWDGASKVRREMKERGL 437
>gi|357138593|ref|XP_003570875.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g02750-like [Brachypodium distachyon]
Length = 664
Score = 226 bits (576), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 123/361 (34%), Positives = 189/361 (52%), Gaps = 15/361 (4%)
Query: 119 DFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDI 178
D ++ N+++ + +D A +F +M RDL+SWN+I+ GHV+ GDM+ A+ F
Sbjct: 288 DRDVVAWNTMMGGFVQSERLDDALRLFAEMPERDLVSWNTILQGHVQQGDMATANTWFRG 347
Query: 179 MPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEG 238
MPE++ SWN +ISG+ G +L L EM++ G R ++ T++ V++ C G
Sbjct: 348 MPEKDETSWNTLISGHKDEG----ALALLSEMIRGGLRPDEATLSVVISICASLVALGYG 403
Query: 239 RSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIH 298
+ VH Y V+T + + ++ ++LI +YSKC + A +VF + R+ V WNAMI + H
Sbjct: 404 KMVHLYAVKTGFEHDALVMSSLISMYSKCGLIAEASQVFKLLVQRDTVTWNAMIATYAYH 463
Query: 299 GKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIK 358
G E +KLF + PD TF+ V+ AC L EG +YFR M + + +
Sbjct: 464 GMASEALKLFNKMTK-----DGFRPDHATFLSVLSACAHKGDLYEGCRYFRSMQEDWNLT 518
Query: 359 PNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVE 418
P HY CM +L +A + RK+P D + W +L S C G V + E
Sbjct: 519 PRSDHYSCMVDLLGRLGFIYQAYDFTRKIPSD-----LQINAWETLFSACNAHGDVQLGE 573
Query: 419 RLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLK-EV 477
+AK + P D Y L N+YA W A VR +MK++ + + GC V+LK EV
Sbjct: 574 VIAKDVLQARPSDGGMYTLLANIYASKEMWSSAASVRGVMKEQGLKKETGCSWVELKGEV 633
Query: 478 V 478
V
Sbjct: 634 V 634
Score = 99.4 bits (246), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 72/302 (23%), Positives = 139/302 (46%), Gaps = 34/302 (11%)
Query: 124 VMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERN 183
V N+L++ Y + A +F +M RD +SWN +++G+ R+G M A LFD MP+++
Sbjct: 200 VCNALLSGYVALSCLKDAEELFGRMQRRDPVSWNVMITGYARAGRMQVAQSLFDEMPQKD 259
Query: 184 VVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEG-RSVH 242
+SW ++ GY ++G+ S K+F+++ + M + +S R ++ R
Sbjct: 260 TISWTAVMRGYLQNGDVDASWKVFQDIPDRDVVAWNTMMGGFV----QSERLDDALRLFA 315
Query: 243 GYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPE 302
R + N IL + + + A F M +++ WN +I GH K E
Sbjct: 316 EMPERDLVSWNTILQG-----HVQQGDMATANTWFRGMPEKDETSWNTLISGH----KDE 366
Query: 303 EGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFA 362
+ L + ++ G + PDE T VI C A L+ G + +M+ Y +K F
Sbjct: 367 GALALLSEMIR-----GGLRPDEATLSVVISIC--ASLVALG---YGKMVHLYAVKTGFE 416
Query: 363 H----YWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVE 418
H + ++Y+ L EA ++ + + + +++ W ++++ + G +
Sbjct: 417 HDALVMSSLISMYSKCGLIAEASQVFKLLVQR------DTVTWNAMIATYAYHGMASEAL 470
Query: 419 RL 420
+L
Sbjct: 471 KL 472
Score = 96.7 bits (239), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 79/320 (24%), Positives = 149/320 (46%), Gaps = 51/320 (15%)
Query: 141 ARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNP 200
AR +F M R+ +SW ++++G+ R G ++ A ELFD MP+RNVVSWN M+SGY ++G
Sbjct: 93 ARRVFDAMPVRNPVSWAALLTGYARCGRVAEARELFDRMPDRNVVSWNAMMSGYLRNGMV 152
Query: 201 GCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRS----------------VHGY 244
+ +LF +MM S ND + ++++ + R E R + GY
Sbjct: 153 ERARELF-DMMPS---RNDVSWLTMISGYIKKRRLREARELFDLSPSHPTSVCNALLSGY 208
Query: 245 TVRTSLKP-----------NIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMIL 293
+ LK + + +I Y++ +++VAQ +FD M ++ + W A++
Sbjct: 209 VALSCLKDAEELFGRMQRRDPVSWNVMITGYARAGRMQVAQSLFDEMPQKDTISWTAVMR 268
Query: 294 GHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMID 353
G+ +G + K+F + + D + + ++ V++E L + + F +M +
Sbjct: 269 GYLQNGDVDASWKVFQDIPD---------RDVVAWNTMMGGFVQSERLDDALRLFAEMPE 319
Query: 354 FYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGA 413
+ N ++ G T A R MPE ++ W +L+S + +GA
Sbjct: 320 RDLVSWNTI---LQGHVQQGDMAT--ANTWFRGMPEKDET------SWNTLISGHKDEGA 368
Query: 414 VAMVERLAKSFVDMDPQDFS 433
+A++ + + + D S
Sbjct: 369 LALLSEMIRGGLRPDEATLS 388
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 85/342 (24%), Positives = 146/342 (42%), Gaps = 47/342 (13%)
Query: 152 DLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMM 211
D+ WN++++ H+R+G ++AA +FD MPERNV +WN MISG + + ++F M
Sbjct: 42 DIFQWNAVITAHLRAGRVAAARRVFDEMPERNVFTWNCMISGLVGNRMLADARRVFDAMP 101
Query: 212 KSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVE 271
N + A++LT R R E R + N++ A++ Y + VE
Sbjct: 102 VR----NPVSWAALLTGYARCGRVAEARELFDRMP----DRNVVSWNAMMSGYLRNGMVE 153
Query: 272 VAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFI-- 329
A+ +FD M RN V W MI G+ + E +LF +SP T +
Sbjct: 154 RARELFDMMPSRNDVSWLTMISGYIKKRRLREARELF-----------DLSPSHPTSVCN 202
Query: 330 GVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPE 389
++ V L + + F +M + N M YA A + A+ + +MP+
Sbjct: 203 ALLSGYVALSCLKDAEELFGRMQRRDPVSWN-----VMITGYARAGRMQVAQSLFDEMPQ 257
Query: 390 DNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWE 449
D +S+ ++M R V+ K F D+ +D + ++ + + + +
Sbjct: 258 -KDTISWTAVM--------RGYLQNGDVDASWKVFQDIPDRDVVAWNTMMGGFVQSERLD 308
Query: 450 DVARVRELMKKRRMGRMPGCRLVDLKEVVEKLKVGHFWRGGM 491
D R+ MP LV +++ GH +G M
Sbjct: 309 DALRL--------FAEMPERDLVSWNTILQ----GHVQQGDM 338
Score = 75.9 bits (185), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 61/242 (25%), Positives = 99/242 (40%), Gaps = 40/242 (16%)
Query: 69 DQGVVFYL-QMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNS 127
D+G + L +MI+ G P+ T + CA + G M H A+K G + + VM+S
Sbjct: 365 DEGALALLSEMIRGGLRPDEATLSVVISICASLVALGYGKMVHLYAVKTGFEHDALVMSS 424
Query: 128 LINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSW 187
LI+MY G + A +F + RD ++WN++
Sbjct: 425 LISMYSKCGLIAEASQVFKLLVQRDTVTWNAM---------------------------- 456
Query: 188 NIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEG-RSVHGYTV 246
I+ Y+ G +LKLF +M K GFR + T SVL+AC EG R
Sbjct: 457 ---IATYAYHGMASEALKLFNKMTKDGFRPDHATFLSVLSACAHKGDLYEGCRYFRSMQE 513
Query: 247 RTSLKPNIILDTALIDLYSKC----QKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPE 302
+L P + ++DL + Q + +++ +D + W + HG +
Sbjct: 514 DWNLTPRSDHYSCMVDLLGRLGFIYQAYDFTRKI---PSDLQINAWETLFSACNAHGDVQ 570
Query: 303 EG 304
G
Sbjct: 571 LG 572
Score = 43.5 bits (101), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 34/64 (53%)
Query: 43 VFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGC 102
VFK + T NA+I Y+ + + + + +M K+GF P+ TF+S+ +CA G
Sbjct: 441 VFKLLVQRDTVTWNAMIATYAYHGMASEALKLFNKMTKDGFRPDHATFLSVLSACAHKGD 500
Query: 103 VERG 106
+ G
Sbjct: 501 LYEG 504
>gi|296087629|emb|CBI34885.3| unnamed protein product [Vitis vinifera]
Length = 728
Score = 226 bits (576), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 131/423 (30%), Positives = 228/423 (53%), Gaps = 9/423 (2%)
Query: 56 NAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALK 115
+A+I YS S ++ + + +M++ GF PN F + A + G HG K
Sbjct: 285 SAMIARYSQSGYAEEALKLFSKMVQEGFKPNISCFACTLSALASLRALSAGINIHGHVTK 344
Query: 116 NGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHEL 175
G+D ++ + +SLI++Y G D R +F + ++++ WNS+V G+ +G + EL
Sbjct: 345 IGIDKDVFIGSSLIDLYCKCGKPDDGRLVFDLILEKNVVCWNSMVGGYSINGRLEETEEL 404
Query: 176 FDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARF 235
F+++PE+N VSW +I+GY ++ L++F ++ SG N T +SVL AC A
Sbjct: 405 FELIPEKNDVSWGTIIAGYLENEQCEKVLEVFNTLLVSGQTPNKSTFSSVLCACASIASL 464
Query: 236 NEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGH 295
++G +VHG ++ ++ +I + TAL D+Y+KC + +++VF+ M ++N + W MI G
Sbjct: 465 DKGMNVHGKIIKLGIQYDIFVGTALTDMYAKCGDIGSSKQVFERMPEKNEISWTVMIQGL 524
Query: 296 CIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFY 355
G E + LF + + ++P+E+ + V+ AC L+ +G YF M Y
Sbjct: 525 AESGFAVESLILFEEMERTS----EVAPNELMLLSVLFACSHCGLVDKGLWYFNSMEKVY 580
Query: 356 KIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVA 415
IKP HY C+ +L + + EAEE +R +P E+ W +LLS C+
Sbjct: 581 GIKPKGKHYTCVVDLLSRSGRLYEAEEFIRTIP-----FQPEANAWAALLSGCKKYKDEK 635
Query: 416 MVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLK 475
+ ER AK + + + Y L N+YA AG+W DV+ +R+LM+++ + + GC V+++
Sbjct: 636 IAERTAKKLWQLAENNSAGYVLLSNIYASAGRWIDVSNIRKLMREKGLKKSGGCSWVEVR 695
Query: 476 EVV 478
V
Sbjct: 696 NQV 698
Score = 190 bits (482), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 106/363 (29%), Positives = 189/363 (52%), Gaps = 27/363 (7%)
Query: 56 NAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALK 115
A I + + + + + + +++++G PN TF S+ +C + G G GL +K
Sbjct: 153 TAAISGFVRNGLNFEALKLFFRLLESGVRPNDVTFTSVVRACGELGDFGLGMSILGLVVK 212
Query: 116 NGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHEL 175
G + L V NSLI + G +D AR +F +M RD++SW +I+ +V +GD+ A +
Sbjct: 213 AGFEHYLSVSNSLITLSLRMGEIDLARRVFDRMEKRDVVSWTAILDAYVETGDLREARRI 272
Query: 176 FDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARF 235
FD MPERN +SW+ MI+ YS+SG +LKLF +M++ GF+ N A L+A
Sbjct: 273 FDEMPERNEISWSAMIARYSQSGYAEEALKLFSKMVQEGFKPNISCFACTLSALASLRAL 332
Query: 236 NEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGH 295
+ G ++HG+ + + ++ + ++LIDLY KC K + + VFD + ++N+VCWN+M+ G+
Sbjct: 333 SAGINIHGHVTKIGIDKDVFIGSSLIDLYCKCGKPDDGRLVFDLILEKNVVCWNSMVGGY 392
Query: 296 CIHGK-----------PEEGIKLFTALVNG---------------TVAGGSISPDEITFI 329
I+G+ PE+ + ++ G T+ +P++ TF
Sbjct: 393 SINGRLEETEELFELIPEKNDVSWGTIIAGYLENEQCEKVLEVFNTLLVSGQTPNKSTFS 452
Query: 330 GVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPE 389
V+CAC L +G ++I I+ + + ++YA ++++ +MPE
Sbjct: 453 SVLCACASIASLDKGMNVHGKIIKL-GIQYDIFVGTALTDMYAKCGDIGSSKQVFERMPE 511
Query: 390 DND 392
N+
Sbjct: 512 KNE 514
Score = 137 bits (345), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 92/322 (28%), Positives = 164/322 (50%), Gaps = 21/322 (6%)
Query: 54 CVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSL---FGSCAKTGCVERGGMCH 110
CV +++K +SN + QG V + +IK GF Y + L + +C K +++
Sbjct: 24 CV-SLLKKFSNQGLITQGNVLHAHLIKTGFSSQRYIAIKLLILYLNCRKFAEIDQ----- 77
Query: 111 GLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMS 170
+K +L V N +I+ Y +G + AR +F +M R+ +SW++++SG ++ G +
Sbjct: 78 --IVKEFDGSDLVVSNCMISAYVQWGNLVQARLLFDEMPERNEVSWSALISGLMKYGRVE 135
Query: 171 AAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACG 230
+ F+ P +NVVSW ISG+ ++G +LKLF +++SG R ND T SV+ ACG
Sbjct: 136 ESMWYFERNPFQNVVSWTAAISGFVRNGLNFEALKLFFRLLESGVRPNDVTFTSVVRACG 195
Query: 231 RSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNA 290
F G S+ G V+ + + + +LI L + ++++A+RVFD M R++V W A
Sbjct: 196 ELGDFGLGMSILGLVVKAGFEHYLSVSNSLITLSLRMGEIDLARRVFDRMEKRDVVSWTA 255
Query: 291 MILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQ 350
++ + G E ++F + +EI++ +I ++ E K F +
Sbjct: 256 ILDAYVETGDLREARRIFDEMPE---------RNEISWSAMIARYSQSGYAEEALKLFSK 306
Query: 351 MIDFYKIKPNFAHYWCMANLYA 372
M+ KPN + + C + A
Sbjct: 307 MVQ-EGFKPNISCFACTLSALA 327
Score = 66.2 bits (160), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 71/308 (23%), Positives = 120/308 (38%), Gaps = 76/308 (24%)
Query: 35 GSPDYTVLVFKCINNPGTFCVNAVIKAYS-----------NSCVPDQG-------VVFYL 76
G PD LVF I C N+++ YS +P++ + YL
Sbjct: 365 GKPDDGRLVFDLILEKNVVCWNSMVGGYSINGRLEETEELFELIPEKNDVSWGTIIAGYL 424
Query: 77 Q-------------MIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELP 123
+ ++ +G PN TF S+ +CA +++G HG +K G+ +++
Sbjct: 425 ENEQCEKVLEVFNTLLVSGQTPNKSTFSSVLCACASIASLDKGMNVHGKIIKLGIQYDIF 484
Query: 124 VMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERN 183
V +L +MY G + ++ +F +M ++ ISW
Sbjct: 485 VGTALTDMYAKCGDIGSSKQVFERMPEKNEISW--------------------------- 517
Query: 184 VVSWNIMISGYSKSGNPGCSLKLFREMMK-SGFRGNDKTMASVLTACGRSA-------RF 235
+MI G ++SG SL LF EM + S N+ + SVL AC F
Sbjct: 518 ----TVMIQGLAESGFAVESLILFEEMERTSEVAPNELMLLSVLFACSHCGLVDKGLWYF 573
Query: 236 NEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGH 295
N V+G +KP T ++DL S+ ++ A+ ++ + A +L
Sbjct: 574 NSMEKVYG------IKPKGKHYTCVVDLLSRSGRLYEAEEFIRTIPFQPEANAWAALLSG 627
Query: 296 CIHGKPEE 303
C K E+
Sbjct: 628 CKKYKDEK 635
Score = 52.4 bits (124), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 67/316 (21%), Positives = 110/316 (34%), Gaps = 102/316 (32%)
Query: 207 FREMM----KSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALID 262
FR ++ K FR +T S+L +G +H + ++T + L+
Sbjct: 5 FRTLLAIDPKKSFRAYAQTCVSLLKKFSNQGLITQGNVLHAHLIKTGFSSQRYIAIKLLI 64
Query: 263 LYSKCQK-VEVAQRV------------------------------FDSMADRNLVCWNAM 291
LY C+K E+ Q V FD M +RN V W+A+
Sbjct: 65 LYLNCRKFAEIDQIVKEFDGSDLVVSNCMISAYVQWGNLVQARLLFDEMPERNEVSWSAL 124
Query: 292 ILGHCIHGKPEEGIKLF-----------TALVNGTVAGG---------------SISPDE 325
I G +G+ EE + F TA ++G V G + P++
Sbjct: 125 ISGLMKYGRVEESMWYFERNPFQNVVSWTAAISGFVRNGLNFEALKLFFRLLESGVRPND 184
Query: 326 ITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILR 385
+TF V+ AC EL G I +K F HY ++N
Sbjct: 185 VTFTSVVRAC--GEL---GDFGLGMSILGLVVKAGFEHYLSVSN---------------- 223
Query: 386 KMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVA 445
SL++L G + + R+ F M+ +D + +L+ Y
Sbjct: 224 -----------------SLITLSLRMGEIDLARRV---FDRMEKRDVVSWTAILDAYVET 263
Query: 446 GQWEDVARVRELMKKR 461
G + R+ + M +R
Sbjct: 264 GDLREARRIFDEMPER 279
>gi|357480925|ref|XP_003610748.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355512083|gb|AES93706.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 828
Score = 226 bits (576), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 130/470 (27%), Positives = 233/470 (49%), Gaps = 22/470 (4%)
Query: 43 VFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGC 102
+F ++ N ++ Y + + +V +M++ G P+ T +S +CA+ G
Sbjct: 280 IFDEFSDKNLVMYNTIMSNYVQHGLAGEVLVVLDEMLQKGQRPDKVTMLSTIAACAQLGD 339
Query: 103 VERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSG 162
+ G H +NG++ + N++I+MY G + A +F MS + +++WNS+++G
Sbjct: 340 LSVGKSSHAYVFRNGLERLDNISNAIIDMYMKCGKREAACKVFDSMSNKTVVTWNSLIAG 399
Query: 163 HVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTM 222
VR G++ A +F MPE N+VSWN MI ++ ++ L REM G +G+ TM
Sbjct: 400 LVRDGELELALRIFGEMPESNLVSWNTMIGAMVQASMFEEAIDLLREMQNQGIKGDRVTM 459
Query: 223 ASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMAD 282
+ +ACG + + ++ Y + + ++ L TAL+D++S+C A RVF++M
Sbjct: 460 VGIASACGYLGALDLAKWIYTYIEKNDIHIDMQLGTALVDMFSRCGDPLNAMRVFENMEK 519
Query: 283 RNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLT 342
R++ W A I + G + I+LF ++ V D+ F+ ++ A +
Sbjct: 520 RDVSAWTAAIRVKAVEGNAKGAIELFDEMLKQDV-----KADDFVFVALLTAFSHGGYVD 574
Query: 343 EGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMP-EDNDNMSFESIMW 401
+GR+ F M + + P HY CM +L A L EEA ++++ MP + ND ++W
Sbjct: 575 QGRQLFWAMEKIHGVSPQIVHYGCMVDLLGRAGLLEEAFDLMKSMPIKPND------VIW 628
Query: 402 VSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKR 461
S L+ CR V + + P+ + L N+YA AG+W DVARVR MK++
Sbjct: 629 GSFLAACRKHKNVEFANYADEKITQLAPEKVGIHVLLSNIYASAGKWNDVARVRLQMKEK 688
Query: 462 RMGRMPGCRLVDLKEVVEKLKVG------HFWRGGMKEEVNKMMECRQSR 505
++ G +++ ++ + G + G M +E+N CR S+
Sbjct: 689 GFQKVAGSSSIEVHGLIREFTSGDESHTENAQIGLMLQEIN----CRISQ 734
Score = 134 bits (338), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 95/348 (27%), Positives = 158/348 (45%), Gaps = 45/348 (12%)
Query: 3 QLLQIQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFC----VNAV 58
+L Q+ +++ G+F N I S +Y + FK + GT C N +
Sbjct: 37 ELKQLHCNMLKKGVFNINKL--IAACVQMGTHESLNYALNAFK--EDEGTKCSLYTCNTL 92
Query: 59 IKAYSNSCVPDQGVVFYLQMI-KNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNG 117
I+ Y+ S + + + YL MI G +P+++TF L +C+K G HG+ +K G
Sbjct: 93 IRGYAASGLCKEAIFIYLHMIIVMGIVPDNFTFPFLLSACSKIMAFSEGVQVHGVVVKMG 152
Query: 118 VDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFD 177
+ +L V NSLI+ Y G +D R ++FD
Sbjct: 153 LVKDLFVANSLIHFYAACGKVDLGR-------------------------------KVFD 181
Query: 178 IMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNE 237
M ERNVVSW +I+GYS ++ LF EM++ G N TM ++AC +
Sbjct: 182 EMLERNVVSWTSLINGYSVVNMAKEAVCLFFEMVEVGVEPNPVTMVCAISACAKLKDLEL 241
Query: 238 GRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCI 297
G+ V +K N ++ AL+D+Y KC + + +FD +D+NLV +N ++ +
Sbjct: 242 GKKVCNLMTELGVKSNTLVVNALLDMYMKCGDMYAVREIFDEFSDKNLVMYNTIMSNYVQ 301
Query: 298 HGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGR 345
HG E + + ++ PD++T + I AC + L+ G+
Sbjct: 302 HGLAGEVLVVLDEMLQ-----KGQRPDKVTMLSTIAACAQLGDLSVGK 344
Score = 131 bits (329), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 95/346 (27%), Positives = 154/346 (44%), Gaps = 41/346 (11%)
Query: 7 IQAHLITSGLFFNNSFWTINLLKH-SADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSNS 65
+Q H + + + N L H A G D VF + ++I YS
Sbjct: 142 VQVHGVVVKMGLVKDLFVANSLIHFYAACGKVDLGRKVFDEMLERNVVSWTSLINGYSVV 201
Query: 66 CVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVM 125
+ + V + +M++ G PN T V +CAK +E G L + GV V+
Sbjct: 202 NMAKEAVCLFFEMVEVGVEPNPVTMVCAISACAKLKDLELGKKVCNLMTELGVKSNTLVV 261
Query: 126 NSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVV 185
N+L++MY M C GDM A E+FD ++N+V
Sbjct: 262 NALLDMY-----MKC--------------------------GDMYAVREIFDEFSDKNLV 290
Query: 186 SWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYT 245
+N ++S Y + G G L + EM++ G R + TM S + AC + + G+S H Y
Sbjct: 291 MYNTIMSNYVQHGLAGEVLVVLDEMLQKGQRPDKVTMLSTIAACAQLGDLSVGKSSHAYV 350
Query: 246 VRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGI 305
R L+ + A+ID+Y KC K E A +VFDSM+++ +V WN++I G G+ E +
Sbjct: 351 FRNGLERLDNISNAIIDMYMKCGKREAACKVFDSMSNKTVVTWNSLIAGLVRDGELELAL 410
Query: 306 KLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQM 351
++F G + +++ +I A V+A + E R+M
Sbjct: 411 RIF---------GEMPESNLVSWNTMIGAMVQASMFEEAIDLLREM 447
Score = 88.6 bits (218), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 61/251 (24%), Positives = 121/251 (48%), Gaps = 19/251 (7%)
Query: 142 RNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPER-----NVVSWNIMISGYSK 196
+ + M + + + N +++ V+ G + + + E ++ + N +I GY+
Sbjct: 39 KQLHCNMLKKGVFNINKLIAACVQMGTHESLNYALNAFKEDEGTKCSLYTCNTLIRGYAA 98
Query: 197 SGNPGCSLKLFREMM-KSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNII 255
SG ++ ++ M+ G ++ T +L+AC + F+EG VHG V+ L ++
Sbjct: 99 SGLCKEAIFIYLHMIIVMGIVPDNFTFPFLLSACSKIMAFSEGVQVHGVVVKMGLVKDLF 158
Query: 256 LDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGT 315
+ +LI Y+ C KV++ ++VFD M +RN+V W ++I G+ + +E + LF +V
Sbjct: 159 VANSLIHFYAACGKVDLGRKVFDEMLERNVVSWTSLINGYSVVNMAKEAVCLFFEMVEV- 217
Query: 316 VAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPN-------FAHYWCMA 368
+ P+ +T + I AC + + L G+K M + +K N Y
Sbjct: 218 ----GVEPNPVTMVCAISACAKLKDLELGKKVCNLMTEL-GVKSNTLVVNALLDMYMKCG 272
Query: 369 NLYAGAELTEE 379
++YA E+ +E
Sbjct: 273 DMYAVREIFDE 283
>gi|356511265|ref|XP_003524347.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g02750-like [Glycine max]
Length = 750
Score = 226 bits (576), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 118/359 (32%), Positives = 194/359 (54%), Gaps = 10/359 (2%)
Query: 126 NSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVV 185
N +I Y + MD R +F +M ++ SWN ++SG+ ++GD++ A LFD+MP+R+ V
Sbjct: 285 NVMIAGYAQYKRMDMGRELFEEMPFPNIGSWNIMISGYCQNGDLAQARNLFDMMPQRDSV 344
Query: 186 SWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYT 245
SW +I+GY+++G ++ + EM + G N T L+AC A G+ VHG
Sbjct: 345 SWAAIIAGYAQNGLYEEAMNMLVEMKRDGESLNRSTFCCALSACADIAALELGKQVHGQV 404
Query: 246 VRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGI 305
VRT + ++ AL+ +Y KC ++ A VF + +++V WN M+ G+ HG + +
Sbjct: 405 VRTGYEKGCLVGNALVGMYCKCGCIDEAYDVFQGVQHKDIVSWNTMLAGYARHGFGRQAL 464
Query: 306 KLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYW 365
+F +++ V PDEIT +GV+ AC L G +YF M Y I PN HY
Sbjct: 465 TVFESMITAGV-----KPDEITMVGVLSACSHTGLTDRGTEYFHSMNKDYGITPNSKHYA 519
Query: 366 CMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFV 425
CM +L A EEA+ ++R MP + D + W +LL R G + + E+ A+
Sbjct: 520 CMIDLLGRAGCLEEAQNLIRNMPFEPD-----AATWGALLGASRIHGNMELGEQAAEMVF 574
Query: 426 DMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLKEVVEKLKVG 484
M+P + Y L N+YA +G+W DV+++R M++ + + PG V+++ + VG
Sbjct: 575 KMEPHNSGMYVLLSNLYAASGRWVDVSKMRLKMRQIGVQKTPGYSWVEVQNKIHTFTVG 633
Score = 111 bits (277), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 97/352 (27%), Positives = 162/352 (46%), Gaps = 40/352 (11%)
Query: 111 GLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMS 170
+ L+N V + N++I+ Y AR++F +M +DL SWN +++G+ R+ +
Sbjct: 58 AMPLRNSVSY-----NAMISGYLRNAKFSLARDLFDKMPHKDLFSWNLMLTGYARNRRLR 112
Query: 171 AAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACG 230
A LFD MPE++VVSWN M+SGY +SG+ + +F M N + +L A
Sbjct: 113 DARMLFDSMPEKDVVSWNAMLSGYVRSGHVDEARDVFDRMPHK----NSISWNGLLAAYV 168
Query: 231 RSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNA 290
RS R E R + + +I L+ Y K + A+++FD + R+L+ WN
Sbjct: 169 RSGRLEEARRL----FESKSDWELISCNCLMGGYVKRNMLGDARQLFDQIPVRDLISWNT 224
Query: 291 MILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQ 350
MI G+ G + +LF S D T+ ++ A V+ +L E R+ F +
Sbjct: 225 MISGYAQDGDLSQARRLFEE---------SPVRDVFTWTAMVYAYVQDGMLDEARRVFDE 275
Query: 351 MIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESI-MWVSLLSLCR 409
M ++ N M YA + + E+ +MP F +I W ++S
Sbjct: 276 MPQKREMSYN-----VMIAGYAQYKRMDMGRELFEEMP-------FPNIGSWNIMISGYC 323
Query: 410 FQGAVAMVERLAKSFVDMDPQ-DFSRYQFLLNVYAVAGQWEDVARVRELMKK 460
G +A A++ DM PQ D + ++ YA G +E+ + MK+
Sbjct: 324 QNGDLAQ----ARNLFDMMPQRDSVSWAAIIAGYAQNGLYEEAMNMLVEMKR 371
Score = 85.1 bits (209), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 60/250 (24%), Positives = 109/250 (43%), Gaps = 33/250 (13%)
Query: 57 AVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKN 116
A+I Y+ + + ++ + ++M ++G N TF +CA +E G HG ++
Sbjct: 348 AIIAGYAQNGLYEEAMNMLVEMKRDGESLNRSTFCCALSACADIAALELGKQVHGQVVRT 407
Query: 117 GVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELF 176
G + V N+L+ MY G +D A ++F + +D++SWN++++G+ R G A
Sbjct: 408 GYEKGCLVGNALVGMYCKCGCIDEAYDVFQGVQHKDIVSWNTMLAGYARHGFGRQA---- 463
Query: 177 DIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFN 236
L +F M+ +G + ++ TM VL+AC + +
Sbjct: 464 ---------------------------LTVFESMITAGVKPDEITMVGVLSACSHTGLTD 496
Query: 237 EGRS-VHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMA-DRNLVCWNAMILG 294
G H + PN +IDL + +E AQ + +M + + W A++
Sbjct: 497 RGTEYFHSMNKDYGITPNSKHYACMIDLLGRAGCLEEAQNLIRNMPFEPDAATWGALLGA 556
Query: 295 HCIHGKPEEG 304
IHG E G
Sbjct: 557 SRIHGNMELG 566
Score = 76.3 bits (186), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 73/304 (24%), Positives = 127/304 (41%), Gaps = 64/304 (21%)
Query: 160 VSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREM-MKSGFRGN 218
+S H+R+G A +FD MP RN VS+N MISGY ++ + LF +M K F N
Sbjct: 40 ISTHMRNGHCDLALCVFDAMPLRNSVSYNAMISGYLRNAKFSLARDLFDKMPHKDLFSWN 99
Query: 219 DKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFD 278
+LT R+ R + R +FD
Sbjct: 100 -----LMLTGYARNRRLRDARM-----------------------------------LFD 119
Query: 279 SMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRA 338
SM ++++V WNAM+ G+ G +E +F + + + I++ G++ A VR+
Sbjct: 120 SMPEKDVVSWNAMLSGYVRSGHVDEARDVFDRMPH---------KNSISWNGLLAAYVRS 170
Query: 339 ELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFES 398
L E R+ F D+ I N C+ Y + +A ++ ++P +
Sbjct: 171 GRLEEARRLFESKSDWELISCN-----CLMGGYVKRNMLGDARQLFDQIP------VRDL 219
Query: 399 IMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELM 458
I W +++S G ++ RL F + +D + ++ Y G ++ RV + M
Sbjct: 220 ISWNTMISGYAQDGDLSQARRL---FEESPVRDVFTWTAMVYAYVQDGMLDEARRVFDEM 276
Query: 459 KKRR 462
++R
Sbjct: 277 PQKR 280
Score = 47.4 bits (111), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 38/170 (22%), Positives = 72/170 (42%), Gaps = 7/170 (4%)
Query: 35 GSPDYTVLVFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLF 94
G D VF+ + + N ++ Y+ Q + + MI G P+ T V +
Sbjct: 427 GCIDEAYDVFQGVQHKDIVSWNTMLAGYARHGFGRQALTVFESMITAGVKPDEITMVGVL 486
Query: 95 GSCAKTGCVERGG-MCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMS-PRD 152
+C+ TG +RG H + G+ +I++ G G ++ A+N+ M D
Sbjct: 487 SACSHTGLTDRGTEYFHSMNKDYGITPNSKHYACMIDLLGRAGCLEEAQNLIRNMPFEPD 546
Query: 153 LISWNSIVSGHVRSGDM----SAAHELFDIMPERNVVSWNIMISGYSKSG 198
+W +++ G+M AA +F + P N + ++ + Y+ SG
Sbjct: 547 AATWGALLGASRIHGNMELGEQAAEMVFKMEPH-NSGMYVLLSNLYAASG 595
>gi|297598748|ref|NP_001046155.2| Os02g0191200 [Oryza sativa Japonica Group]
gi|46390971|dbj|BAD16484.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
gi|50726401|dbj|BAD34012.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
gi|255670678|dbj|BAF08069.2| Os02g0191200 [Oryza sativa Japonica Group]
Length = 744
Score = 226 bits (575), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 128/431 (29%), Positives = 227/431 (52%), Gaps = 13/431 (3%)
Query: 56 NAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALK 115
++I AYS + + V + M+ +G P+ T +++ +CAK +E G H L +
Sbjct: 208 TSLIAAYSRANRAREAVGCFKTMLSHGIAPDEVTVIAVLSACAKLKDLELGRSLHLLVEE 267
Query: 116 NGVDFELPVMNSLINMYGCFGAMDCARNMFVQMS--PRDLISWNSIVSGHVRSGDMSAAH 173
G+ ++ +LI+MY G A+ +F + PR SWN+I+ G+ + G + A
Sbjct: 268 KGMPTSENLVVALIDMYAKCGDFGHAQQVFDALGRGPRPQ-SWNAIIDGYCKHGHVDVAR 326
Query: 174 ELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSA 233
LFD M R+++++N M++GY SG +L LF M + R ++ T+ ++LTAC
Sbjct: 327 SLFDEMEVRDIITFNSMMTGYIHSGQLREALLLFMSMRRHDLRVDNFTVVNLLTACASLG 386
Query: 234 RFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMIL 293
+GR++H + ++ +I L TAL+D+Y KC +V+ A VF M R++ W AMI
Sbjct: 387 ALQQGRALHACIEQRLVEADIYLGTALLDMYMKCGRVDEATIVFQRMGKRDVHTWTAMIA 446
Query: 294 GHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMID 353
G +G + ++ F + P+ +++I V+ AC + LL EGR YF +M
Sbjct: 447 GLAFNGMGKAALEHFYQM-----RCDGFQPNSVSYIAVLTACSHSCLLNEGRLYFDEMRI 501
Query: 354 FYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGA 413
Y I P HY CM +L + L +EA ++++ MP + +++W S+LS CR
Sbjct: 502 LYNIHPQIEHYGCMIDLLGRSGLLDEAMDLVKTMP-----IQPNAVIWASILSACRVHKH 556
Query: 414 VAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVD 473
+ + + A+ + ++P + Y L N+Y + QWE+ +++R LM++R++ + G +
Sbjct: 557 IDLAQCAAEHLLKLEPDEDGVYVQLYNIYIDSRQWENASKIRMLMEERQVKKTAGYSSIT 616
Query: 474 LKEVVEKLKVG 484
+ V K V
Sbjct: 617 VAGQVHKFVVS 627
Score = 126 bits (316), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 98/382 (25%), Positives = 170/382 (44%), Gaps = 38/382 (9%)
Query: 1 MKQLLQIQAHLITSGLFFNNSFWTINLLKHSADFGSPD-----YTVLVFKCINNPGTFCV 55
++Q ++ A L TSG + +LL + P Y + +F + P TF
Sbjct: 12 VRQAAELHARLTTSGHLLLHPPSARHLLNSLVNCLEPHPLHLRYALHLFDRMP-PSTFLF 70
Query: 56 NAVIKAYSNS-CVPDQGVVFYLQMIKNGFMPNSYTFVSLFG---SCAKTGCVERGGMCHG 111
+ ++A S + P + + + +M + G P+ +TF LF S ++ + M H
Sbjct: 71 DTALRACSRAGSDPHRPFLLFRRMRRAGVRPDGFTFHFLFKCSSSSSRPHSLLLCTMLHA 130
Query: 112 LALKNGVDFELP-VMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMS 170
L+ + P V NSLI+MY G AR F ++ +D ++W ++SG + G +
Sbjct: 131 ACLRTMLPSAAPFVSNSLIHMYIRLGLAADARRAFDEIHVKDAVAWTMLISGLAKMGMLC 190
Query: 171 AAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACG 230
L P R+V+SW +I+ YS++ ++ F+ M+ G ++ T+ +VL+AC
Sbjct: 191 DTQLLLSQAPVRDVISWTSLIAAYSRANRAREAVGCFKTMLSHGIAPDEVTVIAVLSACA 250
Query: 231 RSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMAD-RNLVCWN 289
+ GRS+H + + L ALID+Y+KC AQ+VFD++ WN
Sbjct: 251 KLKDLELGRSLHLLVEEKGMPTSENLVVALIDMYAKCGDFGHAQQVFDALGRGPRPQSWN 310
Query: 290 AMILGHCIHGKPE-----------EGIKLFTALVNGTVAGGSISP--------------- 323
A+I G+C HG + I F +++ G + G +
Sbjct: 311 AIIDGYCKHGHVDVARSLFDEMEVRDIITFNSMMTGYIHSGQLREALLLFMSMRRHDLRV 370
Query: 324 DEITFIGVICACVRAELLTEGR 345
D T + ++ AC L +GR
Sbjct: 371 DNFTVVNLLTACASLGALQQGR 392
>gi|356562016|ref|XP_003549271.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g21065-like [Glycine max]
Length = 705
Score = 226 bits (575), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 145/502 (28%), Positives = 249/502 (49%), Gaps = 45/502 (8%)
Query: 6 QIQAHLITSGLFFNNSFWTINLLKHSADFGSPDY--TVLVFKCINNP----GTFCVNAVI 59
QI + ++ GL N T S+ F + Y +VL P F N +I
Sbjct: 140 QIHSLILKLGLHHNPLVLT-KFAATSSHFNAVHYASSVLFPNDQTTPPPSHDAFLFNTLI 198
Query: 60 KAYSNSC-VPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGV 118
+A++ + + FY M ++ PN +TF + +CA +E GG H +K G
Sbjct: 199 RAFAQTTHSKPHALRFYNTMRRHAVSPNKFTFPFVLKACAGMMRLELGGAVHASMVKFGF 258
Query: 119 DFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDI 178
+ + V N+L++MY C C ++ SG +SA ++FD
Sbjct: 259 EEDPHVRNTLVHMYCC-----CCQDG--------------------SSGPVSAK-KVFDE 292
Query: 179 MPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEG 238
P ++ V+W+ MI GY+++GN ++ LFREM +G ++ TM SVL+AC G
Sbjct: 293 SPVKDSVTWSAMIGGYARAGNSARAVTLFREMQVTGVCPDEITMVSVLSACADLGALELG 352
Query: 239 RSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIH 298
+ + Y R ++ ++ L ALID+++KC V+ A +VF M R +V W +MI+G +H
Sbjct: 353 KWLESYIERKNIMRSVELCNALIDMFAKCGDVDRAVKVFREMKVRTIVSWTSMIVGLAMH 412
Query: 299 GKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIK 358
G+ E + +F ++ + PD++ FIGV+ AC + L+ +G YF M + + I
Sbjct: 413 GRGLEAVLVFDEMME-----QGVDPDDVAFIGVLSACSHSGLVDKGHYYFNTMENMFSIV 467
Query: 359 PNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVE 418
P HY CM ++ + A EA E +R MP + + ++W S+++ C +G + + E
Sbjct: 468 PKIEHYGCMVDMLSRAGRVNEALEFVRAMPVEPNQ-----VIWRSIVTACHARGELKLGE 522
Query: 419 RLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLKEVV 478
+AK + +P S Y L N+YA +WE +VRE+M + M ++PG ++++ +
Sbjct: 523 SVAKELIRREPSHESNYVLLSNIYAKLLRWEKKTKVREMMDVKGMRKIPGSTMIEMNNEI 582
Query: 479 EKLKVGHFWRGGMKEEVNKMME 500
+ G K E+ +M+E
Sbjct: 583 YEFVAGDKSHDQYK-EIYEMVE 603
>gi|449438472|ref|XP_004137012.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g03540-like [Cucumis sativus]
gi|449493172|ref|XP_004159212.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g03540-like [Cucumis sativus]
Length = 605
Score = 226 bits (575), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 136/428 (31%), Positives = 213/428 (49%), Gaps = 47/428 (10%)
Query: 43 VFKCINNPGTFCVNAVIKAYSNSCVPDQGV-VFYLQMIKNGFMPNSYTFVSLFGSCAKTG 101
+F + P C VI A++ + + ++ + FYL+ + P++YTF S+ +C G
Sbjct: 219 LFDELLEPDPVCWTTVISAFTRNDLYEEALGFFYLKHRAHRLCPDNYTFGSVLTACGNLG 278
Query: 102 CVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVS 161
+ +G H + G + +SL++MYG GA++
Sbjct: 279 RLRQGEEIHAKVIAYGFSGNVVTESSLVDMYGKCGAVE---------------------- 316
Query: 162 GHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKT 221
+ LFD M RN VSW+ +++ Y +G+ ++ LFREM + +
Sbjct: 317 ---------KSQRLFDRMSNRNSVSWSALLAVYCHNGDYEKAVNLFREMKEVDLY----S 363
Query: 222 MASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMA 281
+V+ AC A G+ +H +R ++I+++AL+DLY+KC + A RVFD M
Sbjct: 364 FGTVIRACAGLAAVTPGKEIHCQYIRKGGWRDVIVESALVDLYAKCGCINFAYRVFDRMP 423
Query: 282 DRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELL 341
RNL+ WN+MI G +G I++F A++ I PD I+FIG++ AC L+
Sbjct: 424 TRNLITWNSMIHGFAQNGSSGIAIQIFEAMIK-----EGIKPDCISFIGLLFACSHTGLV 478
Query: 342 TEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMW 401
+ R YF M Y IKP HY CM +L A L EEAE ++ ND S +W
Sbjct: 479 DQARHYFDLMTGKYGIKPGVEHYNCMVDLLGRAGLLEEAENLIENAECRND-----SSLW 533
Query: 402 VSLLSLCRFQGA-VAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKK 460
+ LL C A ER+AK ++++PQ + Y L NVY G+W+D +VRELMK
Sbjct: 534 LVLLGACTTTCTNSATAERIAKKLMELEPQCYLSYVHLANVYRAVGRWDDAVKVRELMKN 593
Query: 461 RRMGRMPG 468
R++ +MPG
Sbjct: 594 RQLKKMPG 601
Score = 107 bits (268), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 86/358 (24%), Positives = 152/358 (42%), Gaps = 48/358 (13%)
Query: 90 FVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMD-CARNMFVQM 148
+ SL +C K RG H +K+G++ + V NSL+++Y G+ R +F +
Sbjct: 63 YASLLQTCIKVDSFTRGRQFHAHVVKSGLETDRFVGNSLLSLYFKLGSDSLLTRRVFDGL 122
Query: 149 SPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFR 208
+D++SW S+++G+VR G G +++LF
Sbjct: 123 FVKDVVSWASMITGYVR-------------------------------EGKSGIAIELFW 151
Query: 209 EMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQ 268
+M+ SG N T+++V+ AC G+ HG VR N ++ ++LID+Y +
Sbjct: 152 DMLDSGIEPNGFTLSAVIKACSEIGNLVLGKCFHGVVVRRGFDSNPVILSSLIDMYGRNS 211
Query: 269 KVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITF 328
A+++FD + + + VCW +I + EE + F + PD TF
Sbjct: 212 VSSDARQLFDELLEPDPVCWTTVISAFTRNDLYEEALGFFYL----KHRAHRLCPDNYTF 267
Query: 329 IGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMP 388
V+ AC L +G + ++I Y N + ++Y E+++ + +M
Sbjct: 268 GSVLTACGNLGRLRQGEEIHAKVIA-YGFSGNVVTESSLVDMYGKCGAVEKSQRLFDRMS 326
Query: 389 EDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAG 446
N S+ W +LL++ G E+ F +M D Y F + A AG
Sbjct: 327 NRN------SVSWSALLAVYCHNGD---YEKAVNLFREMKEVDL--YSFGTVIRACAG 373
Score = 61.6 bits (148), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 53/218 (24%), Positives = 97/218 (44%), Gaps = 14/218 (6%)
Query: 191 ISGYSKSGNPGCSLKLFREMMKSGFRGNDKTM-ASVLTACGRSARFNEGRSVHGYTVRTS 249
I + KSG +L L + R N + AS+L C + F GR H + V++
Sbjct: 31 ILQFCKSGLLNDALHLLNSIDLYDSRINKPLLYASLLQTCIKVDSFTRGRQFHAHVVKSG 90
Query: 250 LKPNIILDTALIDLYSKC-QKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLF 308
L+ + + +L+ LY K + +RVFD + +++V W +MI G+ GK I+LF
Sbjct: 91 LETDRFVGNSLLSLYFKLGSDSLLTRRVFDGLFVKDVVSWASMITGYVREGKSGIAIELF 150
Query: 309 TALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMA 368
+++ I P+ T VI AC L G K F ++ N +
Sbjct: 151 WDMLD-----SGIEPNGFTLSAVIKACSEIGNLVLG-KCFHGVVVRRGFDSNPVILSSLI 204
Query: 369 NLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLS 406
++Y ++ +A ++ ++ E + + W +++S
Sbjct: 205 DMYGRNSVSSDARQLFDELLEP------DPVCWTTVIS 236
>gi|15221713|ref|NP_174428.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75169458|sp|Q9C866.1|PPR65_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g31430
gi|12322531|gb|AAG51260.1|AC027135_1 PPR-repeat protein [Arabidopsis thaliana]
gi|332193234|gb|AEE31355.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 570
Score = 226 bits (575), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 145/498 (29%), Positives = 252/498 (50%), Gaps = 15/498 (3%)
Query: 6 QIQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAY-SN 64
++ + + +GL F+ S+ + +L+ A G + T VF + N +I +Y N
Sbjct: 67 KVHGYAVKAGLEFD-SYVSNSLMGMYASLGKIEITHKVFDEMPQRDVVSWNGLISSYVGN 125
Query: 65 SCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPV 124
D VF ++ + T VS +C+ +E G + + +FE+ V
Sbjct: 126 GRFEDAIGVFKRMSQESNLKFDEGTIVSTLSACSALKNLEIGERIYRFVV---TEFEMSV 182
Query: 125 M--NSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPER 182
N+L++M+ G +D AR +F M +++ W S+V G+V +G + A LF+ P +
Sbjct: 183 RIGNALVDMFCKCGCLDKARAVFDSMRDKNVKCWTSMVFGYVSTGRIDEARVLFERSPVK 242
Query: 183 NVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVH 242
+VV W M++GY + +L+LFR M +G R ++ + S+LT C ++ +G+ +H
Sbjct: 243 DVVLWTAMMNGYVQFNRFDEALELFRCMQTAGIRPDNFVLVSLLTGCAQTGALEQGKWIH 302
Query: 243 GYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPE 302
GY + + ++ TAL+D+Y+KC +E A VF + +R+ W ++I G ++G
Sbjct: 303 GYINENRVTVDKVVGTALVDMYAKCGCIETALEVFYEIKERDTASWTSLIYGLAMNGMSG 362
Query: 303 EGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFA 362
+ L+ + N + D ITF+ V+ AC + EGRK F M + + ++P
Sbjct: 363 RALDLYYEMEN-----VGVRLDAITFVAVLTACNHGGFVAEGRKIFHSMTERHNVQPKSE 417
Query: 363 HYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAK 422
H C+ +L A L +EAEE++ KM ++D ++ SLLS R G V + ER+A+
Sbjct: 418 HCSCLIDLLCRAGLLDEAEELIDKMRGESDETLVP--VYCSLLSAARNYGNVKIAERVAE 475
Query: 423 SFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLKEVVEKLK 482
++ D S + L +VYA A +WEDV VR MK + + PGC +++ V +
Sbjct: 476 KLEKVEVSDSSAHTLLASVYASANRWEDVTNVRRKMKDLGIRKFPGCSSIEIDGVGHEFI 535
Query: 483 VGHFWRGGMK-EEVNKMM 499
VG K +E+N M+
Sbjct: 536 VGDDLLSHPKMDEINSML 553
Score = 125 bits (314), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 86/381 (22%), Positives = 169/381 (44%), Gaps = 59/381 (15%)
Query: 47 INNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERG 106
+ P N ++K+ ++ + + + ++ G P+++T + S + V G
Sbjct: 6 LQTPSLLMYNKMLKSLADGKSFTKVLALFGELRGQGLYPDNFTLPVVLKSIGRLRKVIEG 65
Query: 107 GMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRS 166
HG A+K G++F+ V NSL+ MY G ++ +F +M RD++SWN ++S +V +
Sbjct: 66 EKVHGYAVKAGLEFDSYVSNSLMGMYASLGKIEITHKVFDEMPQRDVVSWNGLISSYVGN 125
Query: 167 GDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVL 226
G A +F M + +S + ++ T+ S L
Sbjct: 126 GRFEDAIGVFKRMSQ------------------------------ESNLKFDEGTIVSTL 155
Query: 227 TACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLV 286
+AC G ++ + V T + ++ + AL+D++ KC ++ A+ VFDSM D+N+
Sbjct: 156 SACSALKNLEIGERIYRFVV-TEFEMSVRIGNALVDMFCKCGCLDKARAVFDSMRDKNVK 214
Query: 287 CWNAMILGHCIHGK-----------PEEGIKLFTALVNGTV---------------AGGS 320
CW +M+ G+ G+ P + + L+TA++NG V
Sbjct: 215 CWTSMVFGYVSTGRIDEARVLFERSPVKDVVLWTAMMNGYVQFNRFDEALELFRCMQTAG 274
Query: 321 ISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEA 380
I PD + ++ C + L +G K+ I+ ++ + + ++YA E A
Sbjct: 275 IRPDNFVLVSLLTGCAQTGALEQG-KWIHGYINENRVTVDKVVGTALVDMYAKCGCIETA 333
Query: 381 EEILRKMPEDNDNMSFESIMW 401
E+ ++ E D S+ S+++
Sbjct: 334 LEVFYEIKE-RDTASWTSLIY 353
>gi|225454494|ref|XP_002276948.1| PREDICTED: pentatricopeptide repeat-containing protein At4g01030,
mitochondrial-like [Vitis vinifera]
Length = 913
Score = 226 bits (575), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 130/421 (30%), Positives = 207/421 (49%), Gaps = 49/421 (11%)
Query: 77 QMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFG 136
+M GF PNS + S+ + ++ G + G HG L+NG D ++ V SLI+MY
Sbjct: 360 RMQGEGFKPNSSSMTSVLQAISELGFLNMGKETHGYVLRNGFDCDVYVGTSLIDMYVKNH 419
Query: 137 AMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPER-------------- 182
++ A+ +F M R++ +WNS+VSG+ G A L + M +
Sbjct: 420 SLTSAQAVFDNMKNRNIFAWNSLVSGYSFKGMFEDALRLLNQMEKEGIKPDLVTWNGMIS 479
Query: 183 -------------------------NVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRG 217
NVVSW +ISG S++GN SLK F +M + G
Sbjct: 480 GYAMWGCGKEALAVLHQTKSLGLTPNVVSWTALISGSSQAGNNRDSLKFFAQMQQEGVMP 539
Query: 218 NDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVF 277
N ++ +L AC + +G+ +H ++R ++ + TALID+YSK ++ A +VF
Sbjct: 540 NSASITCLLRACASLSLLQKGKEIHCLSIRNGFIEDVFVATALIDMYSKSSSLKNAHKVF 599
Query: 278 DSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVR 337
+ ++ L WN MI+G I G +E I +F + V PD ITF ++ AC
Sbjct: 600 RRIQNKTLASWNCMIMGFAIFGLGKEAISVFNEMQKVGVG-----PDAITFTALLSACKN 654
Query: 338 AELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFE 397
+ L+ EG KYF MI Y+I P HY CM +L A +EA +++ MP D
Sbjct: 655 SGLIGEGWKYFDSMITDYRIVPRLEHYCCMVDLLGRAGYLDEAWDLIHTMPLKPD----- 709
Query: 398 SIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVREL 457
+ +W +LL CR + E AK+ ++P + + Y ++N+Y++ +WED+ +REL
Sbjct: 710 ATIWGALLGSCRIHKNLKFAETAAKNLFKLEPNNSANYILMMNLYSIFNRWEDMDHLREL 769
Query: 458 M 458
M
Sbjct: 770 M 770
Score = 153 bits (387), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 101/377 (26%), Positives = 173/377 (45%), Gaps = 39/377 (10%)
Query: 43 VFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGC 102
VF + NP N I S +GV + +M + + T V + +C K G
Sbjct: 190 VFHEMPNPEALLWNEAIILNLQSEKLQKGVELFRKMQFSFLKAETATIVRVLQACGKMGA 249
Query: 103 VERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSG 162
+ HG + G+D ++ + N LI+MY G ++ AR +F M R+ SWNS++S
Sbjct: 250 LNAAKQIHGYVFRFGLDSDVSLCNPLISMYSKNGKLELARRVFDSMENRNTSSWNSMISS 309
Query: 163 HVRSGDMSAAHELF------DIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFR 216
+ G ++ A LF D+ P+ +V+WN ++SG+ G L + + M GF+
Sbjct: 310 YAALGFLNDAWSLFYELESSDMKPD--IVTWNCLLSGHFLHGYKEEVLNILQRMQGEGFK 367
Query: 217 GNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRV 276
N +M SVL A N G+ HGY +R ++ + T+LID+Y K + AQ V
Sbjct: 368 PNSSSMTSVLQAISELGFLNMGKETHGYVLRNGFDCDVYVGTSLIDMYVKNHSLTSAQAV 427
Query: 277 FDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALV-----------NGTVAGGS----- 320
FD+M +RN+ WN+++ G+ G E+ ++L + NG ++G +
Sbjct: 428 FDNMKNRNIFAWNSLVSGYSFKGMFEDALRLLNQMEKEGIKPDLVTWNGMISGYAMWGCG 487
Query: 321 --------------ISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWC 366
++P+ +++ +I +A + K+F QM + PN A C
Sbjct: 488 KEALAVLHQTKSLGLTPNVVSWTALISGSSQAGNNRDSLKFFAQMQQ-EGVMPNSASITC 546
Query: 367 MANLYAGAELTEEAEEI 383
+ A L ++ +EI
Sbjct: 547 LLRACASLSLLQKGKEI 563
Score = 99.4 bits (246), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 68/248 (27%), Positives = 108/248 (43%), Gaps = 38/248 (15%)
Query: 82 GFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYG-CFGAMDC 140
G + +S + +C + + G HG +K G D ++ + +L+N YG C+G
Sbjct: 128 GVVFDSEVYSVALKTCTRVMDIWLGMEIHGCLIKRGFDLDVYLRCALMNFYGRCWG---- 183
Query: 141 ARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNP 200
+ A+++F MP + WN I +S
Sbjct: 184 ----------------------------LEKANQVFHEMPNPEALLWNEAIILNLQSEKL 215
Query: 201 GCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTAL 260
++LFR+M S + T+ VL ACG+ N + +HGY R L ++ L L
Sbjct: 216 QKGVELFRKMQFSFLKAETATIVRVLQACGKMGALNAAKQIHGYVFRFGLDSDVSLCNPL 275
Query: 261 IDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGS 320
I +YSK K+E+A+RVFDSM +RN WN+MI + G + LF L
Sbjct: 276 ISMYSKNGKLELARRVFDSMENRNTSSWNSMISSYAALGFLNDAWSLFYEL-----ESSD 330
Query: 321 ISPDEITF 328
+ PD +T+
Sbjct: 331 MKPDIVTW 338
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 67/303 (22%), Positives = 135/303 (44%), Gaps = 12/303 (3%)
Query: 158 SIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGY-SKSGNPGCSLKLFREMMKSGFR 216
+++S ++ GD +A +F + RN + WN + + S +G+ L++F+E+ G
Sbjct: 71 NLISSYLGFGDFWSAAMVFYVGLPRNYLKWNSFVEEFKSSAGSLHIVLEVFKELHGKGVV 130
Query: 217 GNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRV 276
+ + + L C R G +HG ++ ++ L AL++ Y +C +E A +V
Sbjct: 131 FDSEVYSVALKTCTRVMDIWLGMEIHGCLIKRGFDLDVYLRCALMNFYGRCWGLEKANQV 190
Query: 277 FDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACV 336
F M + + WN I+ + K ++G++LF + + + T + V+ AC
Sbjct: 191 FHEMPNPEALLWNEAIILNLQSEKLQKGVELFRKM-----QFSFLKAETATIVRVLQACG 245
Query: 337 RAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSF 396
+ L ++ + F + + + + ++Y+ E A + M +N N S
Sbjct: 246 KMGALNAAKQIHGYVFRF-GLDSDVSLCNPLISMYSKNGKLELARRVFDSM--ENRNTSS 302
Query: 397 ESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRE 456
+ M S +L A ++ L S DM P D + LL+ + + G E+V + +
Sbjct: 303 WNSMISSYAALGFLNDAWSLFYELESS--DMKP-DIVTWNCLLSGHFLHGYKEEVLNILQ 359
Query: 457 LMK 459
M+
Sbjct: 360 RMQ 362
>gi|413945386|gb|AFW78035.1| hypothetical protein ZEAMMB73_343828 [Zea mays]
Length = 608
Score = 226 bits (575), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 125/415 (30%), Positives = 223/415 (53%), Gaps = 12/415 (2%)
Query: 56 NAVIKAYSNSCVPDQGVVFYLQMIKN-GFMPNSYTFVSLFGSCAKTGCVERGGMCHGLAL 114
+A++ A S+S P+ + +M+ + P+ + SL + + + G H
Sbjct: 71 SALLAAVSHSSDPELVLPLLRRMLSDDALRPDHFVLASLASAAGRLRSLRLGRQLHAHFA 130
Query: 115 KNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHE 174
+ + V +SLI+MY G AR +F + ++ + W +++SG+ +G A +
Sbjct: 131 ASPYSADNVVKSSLIDMYCKCGVPQDARKVFDSIGVKNSVVWTALISGYASNGCTGEALD 190
Query: 175 LFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDK-TMASVLTACGRSA 233
LF MP + +W +ISG+ K+GN ++ LF EM + R +D +A+V+ A
Sbjct: 191 LFQSMPAHGLFTWTALISGFVKAGNYTGAMGLFVEMRRDDIRIHDAFVLATVIGGAADLA 250
Query: 234 RFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMIL 293
GR +HG+ +R ++I+ AL+D+YSKC + A+ VF+ + R+++ W +++
Sbjct: 251 ALVLGRQLHGFVMRLGFLSSMIVGNALVDMYSKCSDIHSAREVFEGITVRDVISWTTILV 310
Query: 294 GHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMID 353
G HG+ EE L+ ++ +AG + P+E+TF+G+I AC A L+ +GR+ F M
Sbjct: 311 GEAQHGRAEEVFALYNRML---LAG--MKPNEVTFVGLIYACSHAGLVQKGRQLFDSMKR 365
Query: 354 FYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGA 413
Y +KP HY C +L + + EAE+++ MP + D + W +LLS C+
Sbjct: 366 EYGMKPGVQHYTCYLDLLSRSGYLSEAEKLITTMPYEPDEAT-----WGALLSACKKHND 420
Query: 414 VAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPG 468
M R+A + +++ P+D S Y L NVYAV +W+ VA+VR++M + + ++PG
Sbjct: 421 TQMCLRVADNLLELRPKDPSTYILLSNVYAVNCKWDSVAKVRKIMAEMEIRKVPG 475
Score = 89.0 bits (219), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 52/176 (29%), Positives = 90/176 (51%), Gaps = 12/176 (6%)
Query: 159 IVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMK-SGFRG 217
+VS + RS + A FD P R++ ++ +++ S S +P L L R M+ R
Sbjct: 42 LVSAYARSCLLPDARRAFDDAPRRDLHLYSALLAAVSHSSDPELVLPLLRRMLSDDALRP 101
Query: 218 NDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVF 277
+ +AS+ +A GR GR +H + + + ++ ++LID+Y KC + A++VF
Sbjct: 102 DHFVLASLASAAGRLRSLRLGRQLHAHFAASPYSADNVVKSSLIDMYCKCGVPQDARKVF 161
Query: 278 DSMADRNLVCWNAMILGHCIHGKPEEGIKLF-----------TALVNGTVAGGSIS 322
DS+ +N V W A+I G+ +G E + LF TAL++G V G+ +
Sbjct: 162 DSIGVKNSVVWTALISGYASNGCTGEALDLFQSMPAHGLFTWTALISGFVKAGNYT 217
>gi|357124715|ref|XP_003564043.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g06540-like [Brachypodium distachyon]
Length = 599
Score = 226 bits (575), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 127/371 (34%), Positives = 199/371 (53%), Gaps = 13/371 (3%)
Query: 126 NSLINMYGCFGAMDCARNMFVQ-MSPRDL--ISWNSIVSGHVRSGDMSAAHELFDIMPER 182
N+L+ Y G D A +F SP DL +SW ++V G R G + A +LFD MPER
Sbjct: 131 NALLAAYLANGRADLASRLFGSCSSPGDLDVVSWTTMVGGLCRLGLVDDARKLFDGMPER 190
Query: 183 NVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVH 242
N++SWN MISGY K+G +L++F +M G GN AS + AC + GR VH
Sbjct: 191 NLISWNAMISGYVKAGRFLDALEVFDQMRALGIEGNGFVAASAVVACTGAGVLARGREVH 250
Query: 243 GYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPE 302
+ ++ + + L TA++D+Y KC VE A VF + + L WN MI G +HG+ +
Sbjct: 251 RWVEQSGITMDEKLATAVVDMYCKCGSVEEAWHVFKVLPTKGLTSWNCMIGGLAVHGRCK 310
Query: 303 EGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFA 362
+ I+LF + VA PD++T + V+ AC ++++G YF ++ Y I+P
Sbjct: 311 DAIELFHEMEREDVA-----PDDVTLVNVLTACAHTGMVSDGHNYFNYIVQRYGIEPKME 365
Query: 363 HYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAK 422
HY CM +L+ A L +EA++++ MP + D +L C+ + + E +
Sbjct: 366 HYGCMVDLFGRAGLLDEAKKVIDDMPMEPDIGVLG-----ALFGACKIHRDLDLGEAIGW 420
Query: 423 SFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLKEVVEKLK 482
+++DPQ+ RY L N+ A AGQW DVA+VR LM +R + + G ++++ V + +
Sbjct: 421 RVIELDPQNSGRYVLLANLLASAGQWVDVAKVRRLMDERNVSKEAGRSVIEIDGEVCEFQ 480
Query: 483 VGHFWRGGMKE 493
G KE
Sbjct: 481 CGSLCHAQEKE 491
>gi|296084034|emb|CBI24422.3| unnamed protein product [Vitis vinifera]
Length = 502
Score = 226 bits (575), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 135/424 (31%), Positives = 216/424 (50%), Gaps = 30/424 (7%)
Query: 64 NSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGC--VERGGMCHGLALKNGVDFE 121
N +P+ F I G PN TF++L +C + GG H K G+D E
Sbjct: 67 NGQLPEAAAEFSRMQIA-GVRPNHITFLTLLSACTDFPLEGLRFGGSIHAYVRKLGLDTE 125
Query: 122 -LPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMP 180
+ V +L++MY G +D A MF +M R+ +SWN+++ G +R+G++ A LFD M
Sbjct: 126 NVMVGTALVDMYSKCGQLDLAWLMFDEMHVRNSVSWNTMIDGCMRNGEVGEAIVLFDQMS 185
Query: 181 ERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRS 240
ER+ +SW MI G+ K G +L+ FREM +G + T+ SVL AC G
Sbjct: 186 ERDAISWTSMIGGFVKKGCFEQALEWFREMQLAGVEPDYVTIISVLAACANLGALGLGLW 245
Query: 241 VHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGK 300
++ + ++ K NI + +LID+YS+C + +A++VF+ M R+LV WN+MI+G ++G
Sbjct: 246 INRFVMKQDFKDNIKISNSLIDMYSRCGCIRLARQVFEQMPKRSLVSWNSMIVGFALNGH 305
Query: 301 PEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPN 360
EE ++ F + +G L+ EG ++F M KI P
Sbjct: 306 AEEALEFFNLMRKEGHSG---------------------LVDEGLQFFDIMKRTRKISPR 344
Query: 361 FAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERL 420
HY C+ +LY+ A E+A ++ MP M ++ SLL+ CR G V + ERL
Sbjct: 345 IEHYGCLVDLYSRAGRLEDALNVIANMP-----MKPNEVVLGSLLAACRTHGDVGLAERL 399
Query: 421 AKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLKEVVEK 480
K ++DP S Y L N+YA G+W+ ++VR+ MK + + PG +++ + +
Sbjct: 400 MKYLCEVDPGSDSNYVLLSNIYAAVGRWDGASKVRKKMKALGIHKKPGFSSIEMDGSIHE 459
Query: 481 LKVG 484
G
Sbjct: 460 FVAG 463
>gi|222622350|gb|EEE56482.1| hypothetical protein OsJ_05706 [Oryza sativa Japonica Group]
Length = 799
Score = 226 bits (575), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 128/430 (29%), Positives = 227/430 (52%), Gaps = 13/430 (3%)
Query: 56 NAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALK 115
++I AYS + + V + M+ +G P+ T +++ +CAK +E G H L +
Sbjct: 208 TSLIAAYSRANRAREAVGCFKTMLSHGIAPDEVTVIAVLSACAKLKDLELGRSLHLLVEE 267
Query: 116 NGVDFELPVMNSLINMYGCFGAMDCARNMFVQMS--PRDLISWNSIVSGHVRSGDMSAAH 173
G+ ++ +LI+MY G A+ +F + PR SWN+I+ G+ + G + A
Sbjct: 268 KGMPTSENLVVALIDMYAKCGDFGHAQQVFDALGRGPRPQ-SWNAIIDGYCKHGHVDVAR 326
Query: 174 ELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSA 233
LFD M R+++++N M++GY SG +L LF M + R ++ T+ ++LTAC
Sbjct: 327 SLFDEMEVRDIITFNSMMTGYIHSGQLREALLLFMSMRRHDLRVDNFTVVNLLTACASLG 386
Query: 234 RFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMIL 293
+GR++H + ++ +I L TAL+D+Y KC +V+ A VF M R++ W AMI
Sbjct: 387 ALQQGRALHACIEQRLVEADIYLGTALLDMYMKCGRVDEATIVFQRMGKRDVHTWTAMIA 446
Query: 294 GHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMID 353
G +G + ++ F + P+ +++I V+ AC + LL EGR YF +M
Sbjct: 447 GLAFNGMGKAALEHFYQM-----RCDGFQPNSVSYIAVLTACSHSCLLNEGRLYFDEMRI 501
Query: 354 FYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGA 413
Y I P HY CM +L + L +EA ++++ MP + +++W S+LS CR
Sbjct: 502 LYNIHPQIEHYGCMIDLLGRSGLLDEAMDLVKTMP-----IQPNAVIWASILSACRVHKH 556
Query: 414 VAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVD 473
+ + + A+ + ++P + Y L N+Y + QWE+ +++R LM++R++ + G +
Sbjct: 557 IDLAQCAAEHLLKLEPDEDGVYVQLYNIYIDSRQWENASKIRMLMEERQVKKTAGYSSIT 616
Query: 474 LKEVVEKLKV 483
+ V K V
Sbjct: 617 VAGQVHKFVV 626
Score = 126 bits (316), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 106/449 (23%), Positives = 196/449 (43%), Gaps = 45/449 (10%)
Query: 1 MKQLLQIQAHLITSGLFFNNSFWTINLLKHSADFGSPD-----YTVLVFKCINNPGTFCV 55
++Q ++ A L TSG + +LL + P Y + +F + P TF
Sbjct: 12 VRQAAELHARLTTSGHLLLHPPSARHLLNSLVNCLEPHPLHLRYALHLFDRMP-PSTFLF 70
Query: 56 NAVIKAYSNS-CVPDQGVVFYLQMIKNGFMPNSYTFVSLFG---SCAKTGCVERGGMCHG 111
+ ++A S + P + + + +M + G P+ +TF LF S ++ + M H
Sbjct: 71 DTALRACSRAGSDPHRPFLLFRRMRRAGVRPDGFTFHFLFKCSSSSSRPHSLLLCTMLHA 130
Query: 112 LALKNGVDFELP-VMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMS 170
L+ + P V NSLI+MY G AR F ++ +D ++W ++SG + G +
Sbjct: 131 ACLRTMLPSAAPFVSNSLIHMYIRLGLAADARRAFDEIHVKDAVAWTMLISGLAKMGMLC 190
Query: 171 AAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACG 230
L P R+V+SW +I+ YS++ ++ F+ M+ G ++ T+ +VL+AC
Sbjct: 191 DTQLLLSQAPVRDVISWTSLIAAYSRANRAREAVGCFKTMLSHGIAPDEVTVIAVLSACA 250
Query: 231 RSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMA-DRNLVCWN 289
+ GRS+H + + L ALID+Y+KC AQ+VFD++ WN
Sbjct: 251 KLKDLELGRSLHLLVEEKGMPTSENLVVALIDMYAKCGDFGHAQQVFDALGRGPRPQSWN 310
Query: 290 AMILGHCIHGKPE-----------EGIKLFTALVNGTVAGGSISP--------------- 323
A+I G+C HG + I F +++ G + G +
Sbjct: 311 AIIDGYCKHGHVDVARSLFDEMEVRDIITFNSMMTGYIHSGQLREALLLFMSMRRHDLRV 370
Query: 324 DEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEI 383
D T + ++ AC L +GR I+ ++ + + ++Y +EA +
Sbjct: 371 DNFTVVNLLTACASLGALQQGRA-LHACIEQRLVEADIYLGTALLDMYMKCGRVDEATIV 429
Query: 384 LRKMPEDNDNMSFESIMWVSLLSLCRFQG 412
++M + + + W ++++ F G
Sbjct: 430 FQRMGKRDVH------TWTAMIAGLAFNG 452
>gi|413919600|gb|AFW59532.1| hypothetical protein ZEAMMB73_249815 [Zea mays]
Length = 886
Score = 226 bits (575), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 133/435 (30%), Positives = 222/435 (51%), Gaps = 35/435 (8%)
Query: 56 NAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALK 115
+AVI Y+ + + + QMI +G PNS T +SL +CA G + +G H +LK
Sbjct: 364 SAVIAGYAQRGCSQEALDAFQQMILDGSEPNSVTIISLLSACASLGALSQGMEIHAYSLK 423
Query: 116 NGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHEL 175
+ + + DL+ +N+++ + + AA +
Sbjct: 424 KCL-------------------LSLDNDFGGDGDGEDLMVYNALIDMYSKCRSFKAARSI 464
Query: 176 FDIMP--ERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFR--GNDKTMASVLTACGR 231
FD +P ERNVV+W +MI GY++ G+ +LK+F EM+ + N T++ +L AC
Sbjct: 465 FDSIPRRERNVVTWTVMIGGYAQYGDSNDALKIFSEMISKPYAVAPNAYTISCILMACAH 524
Query: 232 SARFNEGRSVHGYTVRT-SLKPNI-ILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWN 289
A G+ +H Y R +P++ + LID+YSKC V+ A+ VFDSM RN V W
Sbjct: 525 LAALRMGKQIHAYVTRHHEYEPSVYFVANCLIDMYSKCGDVDTARNVFDSMPKRNEVSWT 584
Query: 290 AMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFR 349
+M+ G+ +HG+ +E + +F + PD+I+F+ ++ AC + ++ +G YF
Sbjct: 585 SMMSGYGMHGRGKEALDIFDKM-----QKAGFVPDDISFLVLLYACSHSGMVDQGLNYFD 639
Query: 350 QMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCR 409
M Y + + HY C+ +L A ++A + +++MP M +++WV+LLS CR
Sbjct: 640 IMRRDYDVVASAEHYACVIDLLARCGRLDKAWKTIQEMP-----MEPSAVIWVALLSACR 694
Query: 410 FQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGC 469
V + E V+M ++ Y + N+YA A +W+DVAR+R+LMKK + + PGC
Sbjct: 695 VHSNVELAEYALNKLVNMKAENDGSYTLISNIYANARRWKDVARIRQLMKKSGIKKRPGC 754
Query: 470 RLVDLKEVVEKLKVG 484
V K+ VG
Sbjct: 755 SWVQGKKGTASFFVG 769
Score = 163 bits (413), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 124/468 (26%), Positives = 234/468 (50%), Gaps = 52/468 (11%)
Query: 11 LITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCV---NAVIKAYSNSCV 67
LI F +N F L+ + GS + LVF I G V N+++ A+
Sbjct: 174 LICCNGFESNVFVCNALVAMYSRCGSLEDASLVFDEITRKGIDDVISWNSIVAAHVKGSN 233
Query: 68 PDQGVVFY--LQMIKNGFMPNS----YTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFE 121
P + + + MI + N + V++ +CA + + H A++NG +
Sbjct: 234 PRTALELFSEMSMIVHEKATNERSDIISIVNILPACASLKALPQIKEIHSYAIRNGTFAD 293
Query: 122 LPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPE 181
V N+LI+ Y G+M+ A +F M +D++SWN++V+G+ +SG+ AA ELF+ M +
Sbjct: 294 AFVCNALIDTYAKCGSMNDAVKVFNVMEFKDVVSWNAMVTGYTQSGNFGAAFELFENMRK 353
Query: 182 RN----VVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNE 237
N V++W+ +I+GY++ G +L F++M+ G N T+ S+L+AC ++
Sbjct: 354 ENIPLDVITWSAVIAGYAQRGCSQEALDAFQQMILDGSEPNSVTIISLLSACASLGALSQ 413
Query: 238 GRSVHGYTVRTSL------------KPNIILDTALIDLYSKCQKVEVAQRVFDSMA--DR 283
G +H Y+++ L ++++ ALID+YSKC+ + A+ +FDS+ +R
Sbjct: 414 GMEIHAYSLKKCLLSLDNDFGGDGDGEDLMVYNALIDMYSKCRSFKAARSIFDSIPRRER 473
Query: 284 NLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTE 343
N+V W MI G+ +G + +K+F+ +++ A ++P+ T ++ AC L
Sbjct: 474 NVVTWTVMIGGYAQYGDSNDALKIFSEMISKPYA---VAPNAYTISCILMACAHLAALRM 530
Query: 344 GRKYFRQMIDFYKIKPNFAHYW---CMANLYAGAELTEEAEEILRKMPEDNDNMSFESIM 400
G++ + ++ +P+ Y+ C+ ++Y+ + A + MP+ N+ +
Sbjct: 531 GKQIHAYVTRHHEYEPSV--YFVANCLIDMYSKCGDVDTARNVFDSMPKRNE------VS 582
Query: 401 WVSLLSLCRFQG----AVAMVERLAKS-FVDMDPQDFSRYQFLLNVYA 443
W S++S G A+ + +++ K+ FV P D S FL+ +YA
Sbjct: 583 WTSMMSGYGMHGRGKEALDIFDKMQKAGFV---PDDIS---FLVLLYA 624
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 76/293 (25%), Positives = 128/293 (43%), Gaps = 45/293 (15%)
Query: 69 DQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSL 128
D+ + +M++ G P+ +T +C + G HGL NG + + V N+L
Sbjct: 131 DRAIGVSCRMLRAGTKPDHFTLPYALKACGELPSYCCGRALHGLICCNGFESNVFVCNAL 190
Query: 129 INMYGCFGAMDCARNMFVQMSPR---DLISWNSIVSGHVRSGDMSAAHELFDIMPERNVV 185
+ MY G+++ A +F +++ + D+ISWNSIV+ HV
Sbjct: 191 VAMYSRCGSLEDASLVFDEITRKGIDDVISWNSIVAAHV--------------------- 229
Query: 186 SWNIMISGYSKSGNPGCSLKLFREM------MKSGFRGNDKTMASVLTACGRSARFNEGR 239
K NP +L+LF EM + R + ++ ++L AC + +
Sbjct: 230 ----------KGSNPRTALELFSEMSMIVHEKATNERSDIISIVNILPACASLKALPQIK 279
Query: 240 SVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHG 299
+H Y +R + + ALID Y+KC + A +VF+ M +++V WNAM+ G+ G
Sbjct: 280 EIHSYAIRNGTFADAFVCNALIDTYAKCGSMNDAVKVFNVMEFKDVVSWNAMVTGYTQSG 339
Query: 300 KPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMI 352
+LF + +I D IT+ VI + E F+QMI
Sbjct: 340 NFGAAFELFE-----NMRKENIPLDVITWSAVIAGYAQRGCSQEALDAFQQMI 387
Score = 74.3 bits (181), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 46/201 (22%), Positives = 99/201 (49%), Gaps = 8/201 (3%)
Query: 148 MSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLF 207
+SP+ L +V+ ++ G A + + + V WN+++ + K G+ ++ +
Sbjct: 80 VSPKSL--GTGVVASYLACGATKDALSVLERVTPSPAVWWNLLVREHIKEGHLDRAIGVS 137
Query: 208 REMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKC 267
M+++G + + T+ L ACG + GR++HG + N+ + AL+ +YS+C
Sbjct: 138 CRMLRAGTKPDHFTLPYALKACGELPSYCCGRALHGLICCNGFESNVFVCNALVAMYSRC 197
Query: 268 QKVEVAQRVFDSMADR---NLVCWNAMILGHCIHGKPEEGIKLFT--ALVNGTVAGGSIS 322
+E A VFD + + +++ WN+++ H P ++LF+ +++ A S
Sbjct: 198 GSLEDASLVFDEITRKGIDDVISWNSIVAAHVKGSNPRTALELFSEMSMIVHEKATNERS 257
Query: 323 PDEITFIGVICACVRAELLTE 343
D I+ + ++ AC + L +
Sbjct: 258 -DIISIVNILPACASLKALPQ 277
>gi|357117491|ref|XP_003560501.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g44230-like [Brachypodium distachyon]
Length = 652
Score = 226 bits (575), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 115/355 (32%), Positives = 196/355 (55%), Gaps = 9/355 (2%)
Query: 114 LKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAH 173
L G D V NSLI Y G + AR +F +M +D+I W SIV + RS DM +A
Sbjct: 173 LVGGFDKHRFVENSLIGAYIACGDVGAARKVFDEMVVKDVICWTSIVVAYSRSRDMGSAE 232
Query: 174 ELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSA 233
E+F P +++V+W M++GY+++ P +L++F M G ++ ++ ++AC +
Sbjct: 233 EVFGQCPVKDMVAWTAMVTGYAQNAMPMKALEVFDRMTALGIGIDEVSLTGAISACAQLG 292
Query: 234 RFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMIL 293
V N+++ + L+D+Y+KC ++ A +VFD M ++N+ +++M++
Sbjct: 293 AVKRAAWVQEIAEMNGFGMNVVVGSGLVDMYAKCGLIDEACKVFDGMQEKNVYTYSSMVV 352
Query: 294 GHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMID 353
G HG+ E I LF +V ++P+ +TFIGV+ AC A ++T+GR YF QM D
Sbjct: 353 GLASHGRAREAIALFKDMVR----RADVAPNHVTFIGVLTACSHAGMVTDGRYYFAQMKD 408
Query: 354 FYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGA 413
Y I P+ HY CM +L A L +EA +++R M + +W +LL CR G
Sbjct: 409 KYGILPSADHYTCMVDLLGRAGLVDEALDLVRSM-----TVEPHGGVWGALLGACRIHGK 463
Query: 414 VAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPG 468
+ + A+ ++P+ Y L N A AG+W++V++VR++M+ RR+ ++P
Sbjct: 464 TEVAKVAAEHLFKLEPEGIGNYVLLSNTLAAAGKWDEVSKVRKVMRSRRLKKVPA 518
>gi|356557279|ref|XP_003546945.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g23330-like [Glycine max]
Length = 631
Score = 226 bits (575), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 138/496 (27%), Positives = 245/496 (49%), Gaps = 46/496 (9%)
Query: 6 QIQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSNS 65
Q+ A L G+ +N T L+ + S +F I F N +I+AY+ +
Sbjct: 79 QLHARLCQLGIAYNLDLAT-KLVNFYSVCNSLRNAHHLFDKIPKGNLFLWNVLIRAYAWN 137
Query: 66 CVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVM 125
+ + Y QM++ G P+++T + +C+ + G + H +++G + ++ V
Sbjct: 138 GPHETAISLYHQMLEYGLKPDNFTLPFVLKACSALSTIGEGRVIHERVIRSGWERDVFVG 197
Query: 126 NSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVV 185
+L++MY G + AR+ +FD + +R+ V
Sbjct: 198 AALVDMYAKCGCVVDARH-------------------------------VFDKIVDRDAV 226
Query: 186 SWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYT 245
WN M++ Y+++G+P SL L EM G R + T+ +V+++ A GR +HG+
Sbjct: 227 LWNSMLAAYAQNGHPDESLSLCCEMAAKGVRPTEATLVTVISSSADIACLPHGREIHGFG 286
Query: 246 VRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGI 305
R + N + TALID+Y+KC V+VA +F+ + ++ +V WNA+I G+ +HG E +
Sbjct: 287 WRHGFQYNDKVKTALIDMYAKCGSVKVACVLFERLREKRVVSWNAIITGYAMHGLAVEAL 346
Query: 306 KLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYW 365
LF ++ PD ITF+G + AC R LL EGR + M+ +I P HY
Sbjct: 347 DLFERMMK------EAQPDHITFVGALAACSRGRLLDEGRALYNLMVRDCRINPTVEHYT 400
Query: 366 CMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFV 425
CM +L +EA +++R+M ++ +S +W +LL+ C+ G V + E + +
Sbjct: 401 CMVDLLGHCGQLDEAYDLIRQM-----DVMPDSGVWGALLNSCKTHGNVELAEVALEKLI 455
Query: 426 DMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLKEVVEKL---K 482
+++P D Y L N+YA +G+WE VAR+R+LM + + + C +++K V
Sbjct: 456 ELEPDDSGNYVILANMYAQSGKWEGVARLRQLMIDKGIKKNIACSWIEVKNKVYAFLSGD 515
Query: 483 VGHFWRGGMKEEVNKM 498
V H G + E+ ++
Sbjct: 516 VSHPNSGAIYAELKRL 531
Score = 114 bits (285), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 65/261 (24%), Positives = 118/261 (45%), Gaps = 36/261 (13%)
Query: 86 NSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMF 145
N Y + SL SC +E G H + G+ + L + L+N Y ++ A ++F
Sbjct: 57 NHYYYASLLESCISAKALEPGKQLHARLCQLGIAYNLDLATKLVNFYSVCNSLRNAHHLF 116
Query: 146 VQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLK 205
++ +L W N++I Y+ +G ++
Sbjct: 117 DKIPKGNLFLW-------------------------------NVLIRAYAWNGPHETAIS 145
Query: 206 LFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYS 265
L+ +M++ G + ++ T+ VL AC + EGR +H +R+ + ++ + AL+D+Y+
Sbjct: 146 LYHQMLEYGLKPDNFTLPFVLKACSALSTIGEGRVIHERVIRSGWERDVFVGAALVDMYA 205
Query: 266 KCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDE 325
KC V A+ VFD + DR+ V WN+M+ + +G P+E + L + A + P E
Sbjct: 206 KCGCVVDARHVFDKIVDRDAVLWNSMLAAYAQNGHPDESLSLCCEM-----AAKGVRPTE 260
Query: 326 ITFIGVICACVRAELLTEGRK 346
T + VI + L GR+
Sbjct: 261 ATLVTVISSSADIACLPHGRE 281
Score = 62.8 bits (151), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 44/189 (23%), Positives = 82/189 (43%), Gaps = 12/189 (6%)
Query: 218 NDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVF 277
N AS+L +C + G+ +H + + N+ L T L++ YS C + A +F
Sbjct: 57 NHYYYASLLESCISAKALEPGKQLHARLCQLGIAYNLDLATKLVNFYSVCNSLRNAHHLF 116
Query: 278 DSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVR 337
D + NL WN +I + +G E I L+ ++ + PD T V+ AC
Sbjct: 117 DKIPKGNLFLWNVLIRAYAWNGPHETAISLYHQMLE-----YGLKPDNFTLPFVLKACSA 171
Query: 338 AELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFE 397
+ EGR ++I + F + ++YA +A + K+ + +
Sbjct: 172 LSTIGEGRVIHERVIRSGWERDVFVGA-ALVDMYAKCGCVVDARHVFDKI------VDRD 224
Query: 398 SIMWVSLLS 406
+++W S+L+
Sbjct: 225 AVLWNSMLA 233
>gi|2828294|emb|CAA16708.1| putatative protein [Arabidopsis thaliana]
gi|7268714|emb|CAB78921.1| putatative protein [Arabidopsis thaliana]
Length = 1260
Score = 226 bits (575), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 139/464 (29%), Positives = 229/464 (49%), Gaps = 46/464 (9%)
Query: 35 GSPDYTVLVFKCINNPGTFCV--NAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVS 92
G D LVF+ I+ V N++ KAYS Y M++ F P+ TF++
Sbjct: 808 GDLDSAKLVFEAIDRGDRTVVSWNSMFKAYSVFGEAFDAFGLYCLMLREEFKPDLSTFIN 867
Query: 93 LFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRD 152
L SC + +G + H A+ G D ++ +N+ I+MY
Sbjct: 868 LAASCQNPETLTQGRLIHSHAIHLGTDQDIEAINTFISMYS------------------- 908
Query: 153 LISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMK 212
+S D +A LFDIM R VSW +MISGY++ G+ +L LF M+K
Sbjct: 909 ------------KSEDTCSARLLFDIMTSRTCVSWTVMISGYAEKGDMDEALALFHAMIK 956
Query: 213 SGFRGNDKTMASVLTACGRSARFNEGRSVHGYT-VRTSLKPNIILDTALIDLYSKCQKVE 271
SG + + T+ S+++ CG+ G+ + + + N+++ ALID+YSKC +
Sbjct: 957 SGEKPDLVTLLSLISGCGKFGSLETGKWIDARADIYGCKRDNVMICNALIDMYSKCGSIH 1016
Query: 272 VAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGV 331
A+ +FD+ ++ +V W MI G+ ++G E +KLF+ +++ P+ ITF+ V
Sbjct: 1017 EARDIFDNTPEKTVVTWTTMIAGYALNGIFLEALKLFSKMID-----LDYKPNHITFLAV 1071
Query: 332 ICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDN 391
+ AC + L +G +YF M Y I P HY CM +L EEA E++R M
Sbjct: 1072 LQACAHSGSLEKGWEYFHIMKQVYNISPGLDHYSCMVDLLGRKGKLEEALELIRNMSAKP 1131
Query: 392 DNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDV 451
D + +W +LL+ C+ V + E+ A+S +++PQ + Y + N+YA AG W+
Sbjct: 1132 D-----AGIWGALLNACKIHRNVKIAEQAAESLFNLEPQMAAPYVEMANIYAAAGMWDGF 1186
Query: 452 ARVRELMKKRRMGRMPGCRLVDLKEVVEKLKVGHFWRGGMKEEV 495
AR+R +MK+R + + PG ++ + VG G ++ EV
Sbjct: 1187 ARIRSIMKQRNIKKYPGESVIQVNGKNHSFTVGE--HGHVENEV 1228
Score = 118 bits (296), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 98/423 (23%), Positives = 169/423 (39%), Gaps = 43/423 (10%)
Query: 7 IQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSNSC 66
+ AHLI S F+++ F + S DY VF+ + NA++ + S
Sbjct: 680 VHAHLIKSP-FWSDVFVGTATVDMFVKCNSVDYAAKVFERMPERDATTWNAMLSGFCQSG 738
Query: 67 VPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMN 126
D+ + +M N P+S T ++L S + ++ H + ++ GVD ++ V N
Sbjct: 739 HTDKAFSLFREMRLNEITPDSVTVMTLIQSASFEKSLKLLEAMHAVGIRLGVDVQVTVAN 798
Query: 127 SLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVS 186
+ I+ YG G +D A+ +F + D R VVS
Sbjct: 799 TWISTYGKCGDLDSAKLVFEAIDRGD-----------------------------RTVVS 829
Query: 187 WNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTV 246
WN M YS G + L+ M++ F+ + T ++ +C +GR +H + +
Sbjct: 830 WNSMFKAYSVFGEAFDAFGLYCLMLREEFKPDLSTFINLAASCQNPETLTQGRLIHSHAI 889
Query: 247 RTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIK 306
+I I +YSK + A+ +FD M R V W MI G+ G +E +
Sbjct: 890 HLGTDQDIEAINTFISMYSKSEDTCSARLLFDIMTSRTCVSWTVMISGYAEKGDMDEALA 949
Query: 307 LFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIK-PNFAHYW 365
LF A++ PD +T + +I C + L G K+ D Y K N
Sbjct: 950 LFHAMIK-----SGEKPDLVTLLSLISGCGKFGSLETG-KWIDARADIYGCKRDNVMICN 1003
Query: 366 CMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFV 425
+ ++Y+ EA +I PE + W ++++ G +L +
Sbjct: 1004 ALIDMYSKCGSIHEARDIFDNTPEKT------VVTWTTMIAGYALNGIFLEALKLFSKMI 1057
Query: 426 DMD 428
D+D
Sbjct: 1058 DLD 1060
Score = 96.7 bits (239), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 71/295 (24%), Positives = 128/295 (43%), Gaps = 44/295 (14%)
Query: 56 NAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAK---TGCVERGGMCHGL 112
N I+ N P + ++ + +M + GF PN++TF + +CA+ GC E M H
Sbjct: 627 NLQIREAVNRNDPVESLLLFREMKRGGFEPNNFTFPFVAKACARLADVGCCE---MVHAH 683
Query: 113 ALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAA 172
+K+ ++ V + ++M+ ++D A +F +M RD +WN+++SG +SG A
Sbjct: 684 LIKSPFWSDVFVGTATVDMFVKCNSVDYAAKVFERMPERDATTWNAMLSGFCQSGHTDKA 743
Query: 173 HELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRS 232
LF M + ++ + +S + SLKL M
Sbjct: 744 FSLFREMRLNEITPDSVTVMTLIQSASFEKSLKLLEAM---------------------- 781
Query: 233 ARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSM--ADRNLVCWNA 290
H +R + + + I Y KC ++ A+ VF+++ DR +V WN+
Sbjct: 782 ---------HAVGIRLGVDVQVTVANTWISTYGKCGDLDSAKLVFEAIDRGDRTVVSWNS 832
Query: 291 MILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGR 345
M + + G+ + L+ ++ PD TFI + +C E LT+GR
Sbjct: 833 MFKAYSVFGEAFDAFGLYCLMLR-----EEFKPDLSTFINLAASCQNPETLTQGR 882
Score = 92.0 bits (227), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 55/175 (31%), Positives = 87/175 (49%), Gaps = 7/175 (4%)
Query: 159 IVSGHVRSGDMSAAHE-LFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRG 217
++ VR MS H L+ I +V +WN+ I +P SL LFREM + GF
Sbjct: 598 VIGEQVRKS-MSLIHRRLYRISGLSSVNAWNLQIREAVNRNDPVESLLLFREMKRGGFEP 656
Query: 218 NDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVF 277
N+ T V AC R A VH + +++ ++ + TA +D++ KC V+ A +VF
Sbjct: 657 NNFTFPFVAKACARLADVGCCEMVHAHLIKSPFWSDVFVGTATVDMFVKCNSVDYAAKVF 716
Query: 278 DSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVI 332
+ M +R+ WNAM+ G C G ++ LF + I+PD +T + +I
Sbjct: 717 ERMPERDATTWNAMLSGFCQSGHTDKAFSLFREM-----RLNEITPDSVTVMTLI 766
>gi|357438977|ref|XP_003589765.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355478813|gb|AES60016.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 960
Score = 226 bits (575), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 131/474 (27%), Positives = 235/474 (49%), Gaps = 10/474 (2%)
Query: 27 LLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPN 86
L+ A G D VFK + N++I + + + ++ + QM ++ + +
Sbjct: 319 LIDMYAKCGCLDLAKRVFKSLREHDHISWNSLITGVVHFGLGEDALILFNQMRRSSVVLD 378
Query: 87 SYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFV 146
+ ++ G C+ G + HG +K+G+ PV N++I MY G D A +F
Sbjct: 379 EFILPTILGVCSGPDYASTGELLHGYTIKSGMGSSAPVGNAIITMYAKCGDTDKADLVFR 438
Query: 147 QMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKL 206
M R+ ISW ++++ RSGD+ A FD+MPERN+V+WN M+S Y ++G LKL
Sbjct: 439 LMPLRNTISWTAMITAFSRSGDIGKARGYFDMMPERNIVTWNSMLSTYVQNGFSEEGLKL 498
Query: 207 FREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSK 266
+ M +G + + T + + AC A G V + + L N+ + +++ +YS+
Sbjct: 499 YVSMRSNGVQPDWITFTTSIRACADLAIVKLGMQVVTHATKFGLSLNVSVANSIVTMYSR 558
Query: 267 CQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEI 326
C ++ A+ FDS+ D++L+ WNAM+ +G + I F ++ P+ I
Sbjct: 559 CGLIKEAKNTFDSIDDKDLISWNAMLAAFAQNGLGIKVIDTFEDMLK-----TECKPNHI 613
Query: 327 TFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRK 386
+++ V+ C L+ EG+ YF M + I P H+ CM +L A L E+A++++
Sbjct: 614 SYVSVLSGCSHMGLVAEGKHYFDSMTRVFGISPTNEHFSCMVDLLGRAGLLEQAKDLIEG 673
Query: 387 MPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAG 446
MP + + +W +LL CR + + E AK +++D + Y L N+Y+ +G
Sbjct: 674 MPFKPN-----ATVWSALLGSCRVHHDLRLAETAAKKLMELDVEGSEGYVLLSNMYSESG 728
Query: 447 QWEDVARVRELMKKRRMGRMPGCRLVDLKEVVEKLKVGHFWRGGMKEEVNKMME 500
+ ++VA +R+LMK + + GC +++ V V +KE K+ E
Sbjct: 729 ELDNVADMRKLMKVKGIRTSRGCSWIEVDNRVHVFTVDETSHPQIKEVYLKLEE 782
Score = 146 bits (368), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 105/404 (25%), Positives = 185/404 (45%), Gaps = 29/404 (7%)
Query: 56 NAVIKAYSNSCVPDQGVVFYLQMIKN----GFMPNSYTFVSLFGSCAKTGCVERGGMCHG 111
+I YS + + + MI++ G + ++F S+ +C G H
Sbjct: 111 TTMISGYSQNGFHSRSFETFSLMIRDTNDGGKNYDPFSFTSVMKACGSLGDSRLAIQLHA 170
Query: 112 LALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSA 171
L K G E + NS++ MY G +D A +F + L WNS++ G+ +
Sbjct: 171 LVSKLGFGMETCIQNSVVGMYVKCGDVDLAETVFFDIERPSLFCWNSMIYGYSQMYGPYK 230
Query: 172 AHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGR 231
A ++F+ MPER+ VSWN +IS +S+ G L +F EM GF N T SVL+AC
Sbjct: 231 ALQIFNRMPERDEVSWNTLISIFSQHGFGVQCLAMFVEMCNQGFSPNFMTYGSVLSACAS 290
Query: 232 SARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAM 291
++ G +H +R +++ LID+Y+KC +++A+RVF S+ + + + WN++
Sbjct: 291 TSDLKWGAHLHARILRMEHSLDLVFGNGLIDMYAKCGCLDLAKRVFKSLREHDHISWNSL 350
Query: 292 ILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQM 351
I G G E+ + LF + +V DE ++ C + + G ++
Sbjct: 351 ITGVVHFGLGEDALILFNQMRRSSVV-----LDEFILPTILGVCSGPDYASTG-----EL 400
Query: 352 IDFYKIKPNFAHYWCMAN----LYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSL 407
+ Y IK + N +YA T++A+ + R MP N +I W ++++
Sbjct: 401 LHGYTIKSGMGSSAPVGNAIITMYAKCGDTDKADLVFRLMPLRN------TISWTAMITA 454
Query: 408 CRFQGAVAMVERLAKSFVDMDPQ-DFSRYQFLLNVYAVAGQWED 450
G + A+ + DM P+ + + +L+ Y G E+
Sbjct: 455 FSRSGDIGK----ARGYFDMMPERNIVTWNSMLSTYVQNGFSEE 494
Score = 117 bits (294), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 107/459 (23%), Positives = 178/459 (38%), Gaps = 101/459 (22%)
Query: 5 LQIQAHLITSGLFFNNSFWTIN-LLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAYS 63
L IQ H + S L F N ++ G D VF I P FC N++I YS
Sbjct: 164 LAIQLHALVSKLGFGMETCIQNSVVGMYVKCGDVDLAETVFFDIERPSLFCWNSMIYGYS 223
Query: 64 NSCVPD-------------------------------QGVVFYLQMIKNGFMPNSYTFVS 92
P Q + +++M GF PN T+ S
Sbjct: 224 QMYGPYKALQIFNRMPERDEVSWNTLISIFSQHGFGVQCLAMFVEMCNQGFSPNFMTYGS 283
Query: 93 LFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRD 152
+ +CA T ++ G H L+ +L N LI+MY G +D A+ +F + D
Sbjct: 284 VLSACASTSDLKWGAHLHARILRMEHSLDLVFGNGLIDMYAKCGCLDLAKRVFKSLREHD 343
Query: 153 LISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMK 212
ISWNS+++G V G A L LF +M +
Sbjct: 344 HISWNSLITGVVHFGLGEDA-------------------------------LILFNQMRR 372
Query: 213 SGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEV 272
S ++ + ++L C + G +HGYT+++ + + + A+I +Y+KC +
Sbjct: 373 SSVVLDEFILPTILGVCSGPDYASTGELLHGYTIKSGMGSSAPVGNAIITMYAKCGDTDK 432
Query: 273 AQRV-------------------------------FDSMADRNLVCWNAMILGHCIHGKP 301
A V FD M +RN+V WN+M+ + +G
Sbjct: 433 ADLVFRLMPLRNTISWTAMITAFSRSGDIGKARGYFDMMPERNIVTWNSMLSTYVQNGFS 492
Query: 302 EEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNF 361
EEG+KL+ ++ + PD ITF I AC ++ G + F + N
Sbjct: 493 EEGLKLYVSM-----RSNGVQPDWITFTTSIRACADLAIVKLGMQVVTHATKF-GLSLNV 546
Query: 362 AHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIM 400
+ + +Y+ L +EA+ + +D D +S+ +++
Sbjct: 547 SVANSIVTMYSRCGLIKEAKNTFDSI-DDKDLISWNAML 584
Score = 97.4 bits (241), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 68/235 (28%), Positives = 115/235 (48%), Gaps = 11/235 (4%)
Query: 83 FMPNSYTFVSLFGSCA---KTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMD 139
+M S F F C+ K+ + R H + +G+D L ++N+L++MY G
Sbjct: 3 YMQISQKFYDAFKQCSFTHKSPHIARK--LHAQLILSGLDSSLFLLNNLLHMYSNCGLTH 60
Query: 140 CARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPER--NVVSWNIMISGYSKS 197
A +F + R++ +WN+++ V S MS A +LFD MP R + VSW MISGYS++
Sbjct: 61 DAFQVFQETHHRNIFTWNTMIRALVSSSRMSDAEKLFDEMPVRVKDSVSWTTMISGYSQN 120
Query: 198 GNPGCSLKLFREMMKSGFRGNDK----TMASVLTACGRSARFNEGRSVHGYTVRTSLKPN 253
G S + F M++ G + SV+ ACG +H +
Sbjct: 121 GFHSRSFETFSLMIRDTNDGGKNYDPFSFTSVMKACGSLGDSRLAIQLHALVSKLGFGME 180
Query: 254 IILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLF 308
+ +++ +Y KC V++A+ VF + +L CWN+MI G+ P + +++F
Sbjct: 181 TCIQNSVVGMYVKCGDVDLAETVFFDIERPSLFCWNSMIYGYSQMYGPYKALQIF 235
>gi|297809863|ref|XP_002872815.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297318652|gb|EFH49074.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 776
Score = 225 bits (574), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 115/359 (32%), Positives = 195/359 (54%), Gaps = 10/359 (2%)
Query: 126 NSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVV 185
N+++ Y ++ A+ +F M R++ +WN++++G+ + G +S A LFD MP+R+ V
Sbjct: 311 NAMLAGYVQGERVEMAKELFDVMPCRNVSTWNTMITGYAQCGKISEAKNLFDKMPKRDPV 370
Query: 186 SWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYT 245
SW MI+GYS+SG+ +L+LF M + G R N + +S L+ C G+ +HG
Sbjct: 371 SWAAMIAGYSQSGHSYEALRLFVLMEREGGRLNRSSFSSALSTCADVVALELGKQLHGRL 430
Query: 246 VRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGI 305
V+ + + AL+ +Y KC +E A +F MA +++V WN MI G+ HG EE +
Sbjct: 431 VKGGYETGCFVGNALLLMYCKCGSIEEANDLFKEMAGKDIVSWNTMIAGYSRHGFGEEAL 490
Query: 306 KLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYW 365
+ F ++ + PD+ T + V+ AC L+ +GR+YF M Y ++PN HY
Sbjct: 491 RFFESMKR-----EGLKPDDATMVAVLSACSHTGLVDKGRQYFHTMTQDYGVRPNSQHYA 545
Query: 366 CMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFV 425
CM +L A L EEA +++ MP + D + +W +LL R G + E A
Sbjct: 546 CMVDLLGRAGLLEEAHNLMKNMPFEPD-----AAIWGTLLGASRVHGNTELAETAADKIF 600
Query: 426 DMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLKEVVEKLKVG 484
M+P++ Y L N+YA +G+W DV ++R M+ + + ++PG ++++ VG
Sbjct: 601 AMEPENSGMYVLLSNLYASSGRWGDVGKLRVRMRDKGVKKVPGYSWIEIQNKTHTFSVG 659
Score = 117 bits (294), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 91/341 (26%), Positives = 172/341 (50%), Gaps = 32/341 (9%)
Query: 126 NSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVV 185
N++I+ Y G + AR +F +M RDL+SWN ++ G+VR+ ++ A ELF+ MPER+V
Sbjct: 94 NAMISGYLRNGEFELARMLFDEMPERDLVSWNVMIKGYVRNRNLGKARELFERMPERDVC 153
Query: 186 SWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYT 245
SWN ++SGY+++G + ++F M + ND + ++L+A ++++ E + G
Sbjct: 154 SWNTILSGYAQNGCVDDARRVFDRMPEK----NDVSWNALLSAYVQNSKLEEACVLFGSR 209
Query: 246 VRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGI 305
+L + L+ + K +K+ A++ FDSM R++V WN +I G+ +G+ +E
Sbjct: 210 ENWAL----VSWNCLLGGFVKKKKIVEARQFFDSMKVRDVVSWNTIITGYAQNGEIDEAR 265
Query: 306 KLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYW 365
+LF S D T+ ++ ++ ++ E R+ F +M + ++ N
Sbjct: 266 QLFDE---------SPVHDVFTWTAMVSGYIQNRMVEEARELFDRMPERNEVSWN----- 311
Query: 366 CMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFV 425
M Y E E A+E+ MP N + W ++++ G ++ + L F
Sbjct: 312 AMLAGYVQGERVEMAKELFDVMPCRNVS------TWNTMITGYAQCGKISEAKNL---FD 362
Query: 426 DMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRM 466
M +D + ++ Y+ +G + R+ LM +R GR+
Sbjct: 363 KMPKRDPVSWAAMIAGYSQSGHSYEALRLFVLM-EREGGRL 402
Score = 92.8 bits (229), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 61/248 (24%), Positives = 112/248 (45%), Gaps = 33/248 (13%)
Query: 57 AVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKN 116
A+I YS S + + ++ M + G N +F S +CA +E G HG +K
Sbjct: 374 AMIAGYSQSGHSYEALRLFVLMEREGGRLNRSSFSSALSTCADVVALELGKQLHGRLVKG 433
Query: 117 GVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELF 176
G + V N+L+ MY G+++ A ++F +M+ +D++SWN+++
Sbjct: 434 GYETGCFVGNALLLMYCKCGSIEEANDLFKEMAGKDIVSWNTMI---------------- 477
Query: 177 DIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFN 236
+GYS+ G +L+ F M + G + +D TM +VL+AC + +
Sbjct: 478 ---------------AGYSRHGFGEEALRFFESMKREGLKPDDATMVAVLSACSHTGLVD 522
Query: 237 EGRS-VHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMA-DRNLVCWNAMILG 294
+GR H T ++PN ++DL + +E A + +M + + W ++
Sbjct: 523 KGRQYFHTMTQDYGVRPNSQHYACMVDLLGRAGLLEEAHNLMKNMPFEPDAAIWGTLLGA 582
Query: 295 HCIHGKPE 302
+HG E
Sbjct: 583 SRVHGNTE 590
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 44/188 (23%), Positives = 82/188 (43%), Gaps = 7/188 (3%)
Query: 35 GSPDYTVLVFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLF 94
GS + +FK + N +I YS ++ + F+ M + G P+ T V++
Sbjct: 453 GSIEEANDLFKEMAGKDIVSWNTMIAGYSRHGFGEEALRFFESMKREGLKPDDATMVAVL 512
Query: 95 GSCAKTGCVERGGMC-HGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMS-PRD 152
+C+ TG V++G H + GV ++++ G G ++ A N+ M D
Sbjct: 513 SACSHTGLVDKGRQYFHTMTQDYGVRPNSQHYACMVDLLGRAGLLEEAHNLMKNMPFEPD 572
Query: 153 LISWNSIVSGHVRSGDM----SAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFR 208
W +++ G+ +AA ++F + PE N + ++ + Y+ SG G KL
Sbjct: 573 AAIWGTLLGASRVHGNTELAETAADKIFAMEPE-NSGMYVLLSNLYASSGRWGDVGKLRV 631
Query: 209 EMMKSGFR 216
M G +
Sbjct: 632 RMRDKGVK 639
>gi|297793123|ref|XP_002864446.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297310281|gb|EFH40705.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 531
Score = 225 bits (574), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 141/519 (27%), Positives = 249/519 (47%), Gaps = 20/519 (3%)
Query: 1 MKQLLQIQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIK 60
+K L Q +I +GL +N ++ ++ G Y VF P T+ N +I+
Sbjct: 28 LKTLKQSHCFMIITGLNRDN-LNVAKFIEACSNAGHLRYAYSVFTHQPFPNTYLHNTMIR 86
Query: 61 AYS---NSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNG 117
A S + Y + P+++TF + + V G HG A+ G
Sbjct: 87 ALSLVDERNAHSIAITVYRKFWAFCAKPDTFTFPFVLKIVVRVSDVWFGRQVHGQAVVFG 146
Query: 118 VDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFD 177
D + V+ LI MY G + AR +F +M RD+ WN++++G+ + G+M A L +
Sbjct: 147 FDSSVHVVTGLIQMYSSCGGLGDARKVFDEMRVRDVNVWNALLAGYGKVGEMDEARGLLE 206
Query: 178 IMP--ERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARF 235
+MP RN VSW +ISGY++SG ++++F+ M+ ++ T+ +VL+AC
Sbjct: 207 MMPCWVRNAVSWTCVISGYARSGRASEAIEVFQRMLMENVDPDEVTLLAVLSACADLGSL 266
Query: 236 NEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGH 295
G + Y + + L+ A+ID+Y+K + A VF+S+ +RN+V W +I G
Sbjct: 267 ELGERICSYVDHRGMNRAVSLNNAVIDMYAKSGNITKALEVFESVNERNVVTWTTIITGL 326
Query: 296 CIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFY 355
HG E + +F +V + P+++TFI ++ AC + G ++F M Y
Sbjct: 327 ATHGHGAEALVMFDRMVK-----AGVKPNDVTFIAILSACSHVGWVDLGNRFFNSMRSKY 381
Query: 356 KIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVA 415
I PN HY CM +L A EAEE+++ MP +++ + +W SLL+ +
Sbjct: 382 GINPNIEHYGCMIDLLGRAGKLREAEEVIKSMPFESN-----AAIWGSLLAASNVHHDID 436
Query: 416 MVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLK 475
+ ER + ++P + Y L N+Y+ G+W++ +R++MK + ++ G ++++
Sbjct: 437 VGERALYQLIKLEPNNSGNYMLLANLYSNLGRWDESRMMRKMMKGIGVKKLAGESSIEVE 496
Query: 476 EVVEKLKVGHFWRGGMKEEVNKMMECRQSRSLATVSKQL 514
V K G +V K+ E Q L S ++
Sbjct: 497 NRVYKFISGDL----SHPQVEKIHELLQEMDLQIQSNEV 531
>gi|218198855|gb|EEC81282.1| hypothetical protein OsI_24392 [Oryza sativa Indica Group]
Length = 1349
Score = 225 bits (574), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 129/429 (30%), Positives = 223/429 (51%), Gaps = 11/429 (2%)
Query: 56 NAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALK 115
++I AYS + + V + M+ G P+ T + + +C++ +E G H L +
Sbjct: 209 TSLIAAYSRADRAKEAVDCFKNMLSEGIAPDDVTVIGVLSACSQLKDLELGCSLHSLVKE 268
Query: 116 NGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSP-RDLISWNSIVSGHVRSGDMSAAHE 174
G+ ++ +LI+MY G AR +F + R SWN+I+ G+ + G + A
Sbjct: 269 KGMSMSENLVVALIDMYAKCGDFGHAREVFDAVGRGRRPQSWNAIIDGYCKHGHVDVARS 328
Query: 175 LFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSAR 234
LFD M R+++++N MI+GY SG +L LF M + R ++ T+ S+L+AC
Sbjct: 329 LFDQMEVRDIITFNSMITGYIHSGQLREALLLFMNMRRHDLRVDNFTVVSLLSACASLGA 388
Query: 235 FNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILG 294
+GR++H ++ +I + TAL+D+Y KC +V A VF M R++ W AMI G
Sbjct: 389 LPQGRALHACIELRLVETDIYIGTALLDMYMKCGRVNEATIVFQRMGKRDVHAWTAMIAG 448
Query: 295 HCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDF 354
+G + G++ F + P+ +++I V+ AC + LL EGR YF +M
Sbjct: 449 LAFNGMGKAGLEYFYQM-----RCDGFQPNPVSYIAVLTACSHSCLLNEGRLYFDEMRIL 503
Query: 355 YKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAV 414
Y I P HY CM +L + L +EA ++++ MP M S++W S+LS CR +
Sbjct: 504 YNIHPQIEHYGCMIDLLGRSGLLDEAMDLVKTMP-----MQPNSVIWASILSACRVHKRI 558
Query: 415 AMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDL 474
+ + A+ + ++P + + Y L N+ + +WED +++R LM++R++ + G V +
Sbjct: 559 DLAQCAAEHLLKIEPDEDAVYVQLYNICIDSRKWEDASKIRMLMEERQVKKTAGYSSVTV 618
Query: 475 KEVVEKLKV 483
V K V
Sbjct: 619 AGQVHKFVV 627
Score = 130 bits (326), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 109/451 (24%), Positives = 194/451 (43%), Gaps = 48/451 (10%)
Query: 1 MKQLLQIQAHLITSGLFFN--NSFWTINLLKHSADFGSPDYTVLVFKCINN--PGTF--- 53
++Q ++ AHL TSG + ++ +N L + P + + TF
Sbjct: 12 VRQAAELHAHLTTSGRLLHPPSAHHLLNSLVNCLPPSDPLHLRYALHLFDRMPASTFLFD 71
Query: 54 -CVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMC--- 109
+ A +A ++S PD V + +M + P+ +TF LF C+ + R +C
Sbjct: 72 TALRACFRAGTSSGDPDIPFVLFRRMRRAAVRPDGFTFHFLF-KCSSSS-RPRALLCTML 129
Query: 110 HGLALKNGVDFELP-VMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGD 168
H L+ + P V NSLI+MY G R F ++ +D +SW ++SG + G
Sbjct: 130 HAACLRTMLPSAAPFVANSLIHMYTELGLAGDVRRAFDEIPVKDAVSWTMVISGLAKMGM 189
Query: 169 MSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTA 228
+S A L P R+V+SW +I+ YS++ ++ F+ M+ G +D T+ VL+A
Sbjct: 190 LSDARLLLAQAPVRDVISWTSLIAAYSRADRAKEAVDCFKNMLSEGIAPDDVTVIGVLSA 249
Query: 229 CGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMA-DRNLVC 287
C + G S+H + + L ALID+Y+KC A+ VFD++ R
Sbjct: 250 CSQLKDLELGCSLHSLVKEKGMSMSENLVVALIDMYAKCGDFGHAREVFDAVGRGRRPQS 309
Query: 288 WNAMILGHCIHGKPE-----------EGIKLFTALVNGTVAGGSISP------------- 323
WNA+I G+C HG + I F +++ G + G +
Sbjct: 310 WNAIIDGYCKHGHVDVARSLFDQMEVRDIITFNSMITGYIHSGQLREALLLFMNMRRHDL 369
Query: 324 --DEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAE 381
D T + ++ AC L +GR I+ ++ + + ++Y EA
Sbjct: 370 RVDNFTVVSLLSACASLGALPQGRA-LHACIELRLVETDIYIGTALLDMYMKCGRVNEAT 428
Query: 382 EILRKMPEDNDNMSFESIMWVSLLSLCRFQG 412
+ ++M + + + W ++++ F G
Sbjct: 429 IVFQRMGKRDVH------AWTAMIAGLAFNG 453
Score = 124 bits (310), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 103/468 (22%), Positives = 204/468 (43%), Gaps = 44/468 (9%)
Query: 1 MKQLLQIQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIK 60
++Q Q+ ++ +G +N F + +L+ + G TV I + N+++
Sbjct: 911 LEQGRQLHGVVLKAGWIPSNIFLSNSLVDLYSAIGDSVDTVKALNDILSEDVISWNSILS 970
Query: 61 AYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVD- 119
Y++ + V + QM+ +G MP+ +FVSL KTG + G HG+ K G
Sbjct: 971 MYADRGHMKEAVYYLKQMLWHGKMPSIRSFVSLLALSGKTGDWQLGVQIHGIVHKLGFSC 1030
Query: 120 FELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIM 179
+ V +LI+MYG D + +F ++ L NS+++ +R +FD
Sbjct: 1031 SSVHVQTTLIDMYGKCCCFDHSLAIFNEIPSIALECCNSLITSSLRCN-------MFD-- 1081
Query: 180 PERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSAR--FNE 237
+L++ M+ G +D T ++ + A SA
Sbjct: 1082 ----------------------AALEILHCMIVEGVTPDDVTFSATMKAISLSASPSLTS 1119
Query: 238 GRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCI 297
+ +H V+ + ++ + ++LI Y+ ++ + +F+ + D N++C+ A+I
Sbjct: 1120 CQMLHSCLVKLGFEMDMAVCSSLITAYACAGQLSSSHLIFEGLLDPNVICFTAIISACAR 1179
Query: 298 HGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKI 357
+G ++LF +V+ + PD +TF+ I C +A + EGR M ++
Sbjct: 1180 YGDGARAMELFDQMVSS-----GLKPDNVTFLCAIAGCDQAGMFEEGRLVIELMRASREL 1234
Query: 358 KPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMV 417
P+ H+ CM NL + +EA E++ + P + + W SLL C+ G +
Sbjct: 1235 DPDERHFACMVNLLSRDGFVKEAMEMMEQSP-----LRHYTKAWSSLLQSCKAHGENVLG 1289
Query: 418 ERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGR 465
+R A +D+ +D + + N + G E R++E+ + + +
Sbjct: 1290 KRAANMLIDVGRKDPATTLQVSNFFNDIGDRETALRIKEMTNVKEVKK 1337
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 53/256 (20%), Positives = 103/256 (40%), Gaps = 43/256 (16%)
Query: 55 VNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLAL 114
+N +I + + D+ Y M+ +G +TF ++ G C+ ++ HG L
Sbjct: 765 LNRMITGFIRDGLADRARAVYRWMVASGIRETPHTFSTILGVCSTYEALQ----LHGRVL 820
Query: 115 KNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHE 174
G+ V ++L+N Y M V+ SP A+
Sbjct: 821 ALGLCCNPFVGSALVNHY-----------MHVE-SPH-------------------ASLS 849
Query: 175 LFDIMPERNVVSWNIMISGYSKSGNPGCSLKL---FREMMKSGFRGNDKTMASVLTACGR 231
LF +P +N N+++ G GN + +L F +M + N + + C +
Sbjct: 850 LFRELPLQNTAMCNVVLRGL---GNLKLTEELICCFLDMRRQYLELNGLSYCYAMKGCYQ 906
Query: 232 SAR-FNEGRSVHGYTVRTSLKP-NIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWN 289
+ +GR +HG ++ P NI L +L+DLYS + + + +++ WN
Sbjct: 907 NGEWLEQGRQLHGVVLKAGWIPSNIFLSNSLVDLYSAIGDSVDTVKALNDILSEDVISWN 966
Query: 290 AMILGHCIHGKPEEGI 305
+++ + G +E +
Sbjct: 967 SILSMYADRGHMKEAV 982
Score = 45.4 bits (106), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 52/230 (22%), Positives = 96/230 (41%), Gaps = 16/230 (6%)
Query: 179 MPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEG 238
M R+V S N MI+G+ + G + ++R M+ SG R T +++L C E
Sbjct: 757 MAVRDVASLNRMITGFIRDGLADRARAVYRWMVASGIRETPHTFSTILGVCST----YEA 812
Query: 239 RSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIH 298
+HG + L N + +AL++ Y + + +F + +N N ++ G
Sbjct: 813 LQLHGRVLALGLCCNPFVGSALVNHYMHVESPHASLSLFRELPLQNTAMCNVVLRGLGNL 872
Query: 299 GKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVR-AELLTEGRKYFRQMIDFYKI 357
EE I F + + +S + + C + E L +GR+ ++ I
Sbjct: 873 KLTEELICCFLDMRRQYLELNGLS-----YCYAMKGCYQNGEWLEQGRQLHGVVLKAGWI 927
Query: 358 KPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSL 407
N + +LY+ + + + L ND +S + I W S+LS+
Sbjct: 928 PSNIFLSNSLVDLYSAIGDSVDTVKAL------NDILSEDVISWNSILSM 971
>gi|22328607|ref|NP_193141.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|223635650|sp|O23266.3|PP308_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At4g14050, mitochondrial; Flags: Precursor
gi|332657965|gb|AEE83365.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 612
Score = 225 bits (574), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 128/418 (30%), Positives = 220/418 (52%), Gaps = 13/418 (3%)
Query: 85 PNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNM 144
P+ + F +L +CA G ++ G H + + + V +SL++MY G ++ A+ +
Sbjct: 103 PDDFVFSALVKACANLGSIDHGRQVHCHFIVSEYANDEVVKSSLVDMYAKCGLLNSAKAV 162
Query: 145 FVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSL 204
F + ++ ISW ++VSG+ +SG A ELF I+P +N+ SW +ISG+ +SG +
Sbjct: 163 FDSIRVKNTISWTAMVSGYAKSGRKEEALELFRILPVKNLYSWTALISGFVQSGKGLEAF 222
Query: 205 KLFREMMKSGFRGNDK-TMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDL 263
+F EM + D ++S++ AC A GR VHG + + + ALID+
Sbjct: 223 SVFTEMRRERVDILDPLVLSSIVGACANLAASIAGRQVHGLVIALGFDSCVFISNALIDM 282
Query: 264 YSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISP 323
Y+KC V A+ +F M R++V W ++I+G HG+ E+ + L+ +V+ V P
Sbjct: 283 YAKCSDVIAAKDIFSRMRHRDVVSWTSLIVGMAQHGQAEKALALYDDMVSHGV-----KP 337
Query: 324 DEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEI 383
+E+TF+G+I AC + +GR+ F+ M Y I+P+ HY C+ +L + L +EAE +
Sbjct: 338 NEVTFVGLIYACSHVGFVEKGRELFQSMTKDYGIRPSLQHYTCLLDLLGRSGLLDEAENL 397
Query: 384 LRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFV-DMDPQDFSRYQFLLNVY 442
+ MP D + W +LLS C+ QG M R+A V +D S Y L N+Y
Sbjct: 398 IHTMPFPPDEPT-----WAALLSACKRQGRGQMGIRIADHLVSSFKLKDPSTYILLSNIY 452
Query: 443 AVAGQWEDVARVRELMKKRRMGRMPGCRLVDLKEVVEKLKVGHFWRGGMKEEVNKMME 500
A A W V+ R + + + + PG V++++ E G +KE++ ++++
Sbjct: 453 ASASLWGKVSEARRKLGEMEVRKDPGHSSVEVRKETEVFYAGET-SHPLKEDIFRLLK 509
Score = 88.6 bits (218), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 58/235 (24%), Positives = 110/235 (46%), Gaps = 43/235 (18%)
Query: 97 CAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISW 156
CA+ + H +K G+ P+ N+L+N+YG
Sbjct: 13 CARNRTLTTAKALHAHIVKLGIVQCCPLANTLVNVYG----------------------- 49
Query: 157 NSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSG-F 215
+ G S A ++FD MP R+ ++W +++ +++ G +L +F + S
Sbjct: 50 --------KCGAASHALQVFDEMPHRDHIAWASVLTALNQANLSGKTLSVFSSVGSSSGL 101
Query: 216 RGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQR 275
R +D ++++ AC + GR VH + + + + ++ ++L+D+Y+KC + A+
Sbjct: 102 RPDDFVFSALVKACANLGSIDHGRQVHCHFIVSEYANDEVVKSSLVDMYAKCGLLNSAKA 161
Query: 276 VFDSMADRNLVCWNAMILGHCIHGKPEEGIKLF-----------TALVNGTVAGG 319
VFDS+ +N + W AM+ G+ G+ EE ++LF TAL++G V G
Sbjct: 162 VFDSIRVKNTISWTAMVSGYAKSGRKEEALELFRILPVKNLYSWTALISGFVQSG 216
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 49/101 (48%), Gaps = 2/101 (1%)
Query: 69 DQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERG-GMCHGLALKNGVDFELPVMNS 127
++ + Y M+ +G PN TFV L +C+ G VE+G + + G+ L
Sbjct: 321 EKALALYDDMVSHGVKPNEVTFVGLIYACSHVGFVEKGRELFQSMTKDYGIRPSLQHYTC 380
Query: 128 LINMYGCFGAMDCARNMFVQMS-PRDLISWNSIVSGHVRSG 167
L+++ G G +D A N+ M P D +W +++S R G
Sbjct: 381 LLDLLGRSGLLDEAENLIHTMPFPPDEPTWAALLSACKRQG 421
Score = 45.8 bits (107), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 43/209 (20%), Positives = 77/209 (36%), Gaps = 60/209 (28%)
Query: 226 LTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNL 285
L C R+ +++H + V+ + L L+++Y KC A +VFD M R+
Sbjct: 10 LQLCARNRTLTTAKALHAHIVKLGIVQCCPLANTLVNVYGKCGAASHALQVFDEMPHRDH 69
Query: 286 VCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSIS------------PDEITFIGVIC 333
+ W +++ TAL ++G ++S PD+ F ++
Sbjct: 70 IAWASVL----------------TALNQANLSGKTLSVFSSVGSSSGLRPDDFVFSALVK 113
Query: 334 ACVRAELLTEGRKYF---------------RQMIDFY----------------KIKPNFA 362
AC + GR+ ++D Y ++K N
Sbjct: 114 ACANLGSIDHGRQVHCHFIVSEYANDEVVKSSLVDMYAKCGLLNSAKAVFDSIRVK-NTI 172
Query: 363 HYWCMANLYAGAELTEEAEEILRKMPEDN 391
+ M + YA + EEA E+ R +P N
Sbjct: 173 SWTAMVSGYAKSGRKEEALELFRILPVKN 201
>gi|449477559|ref|XP_004155057.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g21065-like [Cucumis sativus]
Length = 562
Score = 225 bits (574), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 122/424 (28%), Positives = 221/424 (52%), Gaps = 43/424 (10%)
Query: 56 NAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALK 115
N++I+ Y + + + M K +P+S TF ++ + A+ G M HG+ ++
Sbjct: 58 NSMIRTYLDLNKHLNSLYIFALMHKFSILPDSSTFPAVLKATAQLCDTGVGKMIHGIVIQ 117
Query: 116 NGVDFELPVMNSLINMY-GCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHE 174
G ++ +L+++Y C +S A +
Sbjct: 118 MGFICDVYTSTALVHLYCTCLS--------------------------------ISDASQ 145
Query: 175 LFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSAR 234
LFD MPERN V+WN +I+GY+ + ++ FR M+ G + +++T+ VL+AC
Sbjct: 146 LFDEMPERNAVTWNALITGYTHNRKFVKAIDAFRGMLADGAQPSERTVVVVLSACSHLGA 205
Query: 235 FNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILG 294
FN+G+ +H + L+ N+ + TALID+Y+KC V ++VF+ + ++N+ WN +I G
Sbjct: 206 FNQGKWIHEFIYHNRLRLNVFVGTALIDMYAKCGAVYEVEKVFEEIREKNVYTWNVLISG 265
Query: 295 HCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDF 354
+ ++G+ + ++ F+ ++ + PDE+TF+GV+CAC L+TEGR F M
Sbjct: 266 YAMNGQGDAALQAFSRMLM-----ENFKPDEVTFLGVLCACCHQGLVTEGRWQFMSMKQQ 320
Query: 355 YKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAV 414
+ ++P HY CM +L A L EEA E+++ M + D I+W +LL CR G
Sbjct: 321 FGLQPRIEHYGCMVDLLGRAGLLEEALELIQSMSIEPD-----PIIWRALLCACRVHGNT 375
Query: 415 AMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDL 474
+ E + K ++++P + Y L N+Y+ +W +V ++R +M R + ++PGC +++
Sbjct: 376 KLGEYIIKRLIELEPNNGENYVLLSNIYSRERRWAEVGKLRGMMSLRGIRKVPGCSSIEI 435
Query: 475 KEVV 478
VV
Sbjct: 436 NNVV 439
>gi|359497772|ref|XP_003635637.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
chloroplastic-like, partial [Vitis vinifera]
Length = 629
Score = 225 bits (574), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 135/462 (29%), Positives = 227/462 (49%), Gaps = 44/462 (9%)
Query: 25 INLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSNSCVPD-QGVVFYLQMIKNGF 83
+++ A GS D + VF+ + A+I AY+ S D + + + +MI
Sbjct: 93 VDMYAKCAADGSVDDSRKVFEQMPEHNVMSWTAIITAYAQSGECDKEAIELFCKMISGHI 152
Query: 84 MPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARN 143
PN ++F S+ +C G + A+K G+ V NSLI+MY
Sbjct: 153 RPNHFSFSSVLKACGNLSDPYTGEQVYSYAVKLGIASVNCVGNSLISMYA---------- 202
Query: 144 MFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCS 203
RSG M A + FDI+ E+N+VS+N ++ GY+K+ +
Sbjct: 203 ---------------------RSGRMEDARKAFDILFEKNLVSYNAIVDGYAKNLKSEEA 241
Query: 204 LKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDL 263
LF E+ +G + T AS+L+ +G +HG ++ K N + ALI +
Sbjct: 242 FLLFNEIADTGIGISAFTFASLLSGAASIGAMGKGEQIHGRLLKGGYKSNQCICNALISM 301
Query: 264 YSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALV-NGTVAGGSIS 322
YS+C +E A +VF+ M DRN++ W +MI G HG +++F ++ GT
Sbjct: 302 YSRCGNIEAAFQVFNEMEDRNVISWTSMITGFAKHGFATRALEMFHKMLETGT------K 355
Query: 323 PDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEE 382
P+EIT++ V+ AC +++EG+K+F M + I P HY CM +L + L EA E
Sbjct: 356 PNEITYVAVLSACSHVGMISEGQKHFNSMYKEHGIVPRMEHYACMVDLLGRSGLLVEAME 415
Query: 383 ILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVY 442
+ MP + ++++W +LL CR G + A+ ++ +P D + Y L N++
Sbjct: 416 FINSMP-----LMADALVWRTLLGACRVHGNTELGRHAAEMILEQEPDDPAAYILLSNLH 470
Query: 443 AVAGQWEDVARVRELMKKRRMGRMPGCRLVDLKEVVEKLKVG 484
A AGQW+DV ++R+ MK+R + + GC ++++ V + VG
Sbjct: 471 ASAGQWKDVVKIRKSMKERNLIKEAGCSWIEVENRVHRFHVG 512
Score = 112 bits (280), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 82/346 (23%), Positives = 160/346 (46%), Gaps = 50/346 (14%)
Query: 66 CVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVM 125
C D + +L M +G++P+ +T+ S+ +C + G + G H ++ G+ ++ V
Sbjct: 31 CARD-AIDLFLDMELSGYVPDRFTYSSVLSACTELGLLALGKQLHSRVIRLGLALDVCVG 89
Query: 126 NSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVV 185
SL++MY CA + G + + ++F+ MPE NV+
Sbjct: 90 CSLVDMYA-----KCAAD-----------------------GSVDDSRKVFEQMPEHNVM 121
Query: 186 SWNIMISGYSKSGN-PGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGY 244
SW +I+ Y++SG +++LF +M+ R N + +SVL ACG + G V+ Y
Sbjct: 122 SWTAIITAYAQSGECDKEAIELFCKMISGHIRPNHFSFSSVLKACGNLSDPYTGEQVYSY 181
Query: 245 TVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEG 304
V+ + + +LI +Y++ ++E A++ FD + ++NLV +NA++ G+ + K EE
Sbjct: 182 AVKLGIASVNCVGNSLISMYARSGRMEDARKAFDILFEKNLVSYNAIVDGYAKNLKSEEA 241
Query: 305 IKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHY 364
LF +A I TF ++ + +G + ++ +K +
Sbjct: 242 FLLFN-----EIADTGIGISAFTFASLLSGAASIGAMGKGEQIHGRL-----LKGGYKSN 291
Query: 365 WCMAN----LYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLS 406
C+ N +Y+ E A ++ +M + N I W S+++
Sbjct: 292 QCICNALISMYSRCGNIEAAFQVFNEMEDRN------VISWTSMIT 331
Score = 105 bits (261), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 65/230 (28%), Positives = 121/230 (52%), Gaps = 18/230 (7%)
Query: 170 SAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTAC 229
+ A+++FD MPERN+V+W +MI+ +++ G ++ LF +M SG+ + T +SVL+AC
Sbjct: 2 APAYKVFDKMPERNLVTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSAC 61
Query: 230 GRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQ---KVEVAQRVFDSMADRNLV 286
G+ +H +R L ++ + +L+D+Y+KC V+ +++VF+ M + N++
Sbjct: 62 TELGLLALGKQLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPEHNVM 121
Query: 287 CWNAMILGHCIHGK-PEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGR 345
W A+I + G+ +E I+LF +++ G I P+ +F V+ AC G
Sbjct: 122 SWTAIITAYAQSGECDKEAIELFCKMIS-----GHIRPNHFSFSSVLKACGNLSDPYTGE 176
Query: 346 KYFRQMIDFYKIKPNFAHYWCMAN----LYAGAELTEEAEEILRKMPEDN 391
+ + Y +K A C+ N +YA + E+A + + E N
Sbjct: 177 QVYS-----YAVKLGIASVNCVGNSLISMYARSGRMEDARKAFDILFEKN 221
>gi|225437951|ref|XP_002269187.1| PREDICTED: pentatricopeptide repeat-containing protein At1g32415,
mitochondrial-like [Vitis vinifera]
Length = 743
Score = 225 bits (574), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 142/459 (30%), Positives = 234/459 (50%), Gaps = 51/459 (11%)
Query: 56 NAVIKAYSNSCVPDQGVVFYLQMIKNGFM-PNSYTFVSLFGSCAKTGCVERGGMCHGLAL 114
A+I ++ + + ++ +L+M N M PN TF+SL +CA G G H +
Sbjct: 266 TAMIGGFAWNGFYKEALLLFLEMKGNYDMKPNDETFISLAYACAGIGFPHLGMQFHAHLI 325
Query: 115 KNGVDFEL---PVMNSLINMYGCFGAMDCA------------------------------ 141
N D++ + SLI+MY FG MD A
Sbjct: 326 INCWDYDDYDGRLFKSLIHMYSMFGFMDFAWYIFFRNSMSYNTQSCNSMINGYIRIGQLE 385
Query: 142 --RNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGN 199
+++F + RD ISW S+++G+ G ++ A LF+ MP+R+ V+W +M+SG+ ++
Sbjct: 386 KAQSLFDTIPVRDKISWTSMINGYFNVGQIAKACYLFNNMPDRDAVAWTVMVSGHVQNEL 445
Query: 200 PGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTA 259
+ LF EM G + T + +L A G A ++GR H ++T + ++IL +
Sbjct: 446 FAEATYLFSEMRVKGVSPLNSTFSILLGAAGAMAYLDQGRQFHCLLMKTQFEFDLILQNS 505
Query: 260 LIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTA-LVNGTVAG 318
LI +Y+KC ++ A +F M R+L+ WN+MI+G HG E +K+F A L +GT
Sbjct: 506 LISMYAKCGEIGDAYSIFSKMISRDLISWNSMIMGFSHHGLTSEALKVFEAMLTSGT--- 562
Query: 319 GSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTE 378
P+ +TF+G++ AC A LL +G + F M D + I+P HY CM NL A E
Sbjct: 563 ---HPNSVTFLGILSACSHAGLLNQGWELFDAMSDVFAIQPQLEHYVCMVNLLGRAGKVE 619
Query: 379 EAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAV--AMVERLAKSFVDMDPQDFSRYQ 436
EAEE + K+P + D +W +LL +C F G + + R AK +++DP + +
Sbjct: 620 EAEEFISKLPFEPD-----LTIWGALLGVCGF-GMINTGVARRAAKRLLELDPLNAPAHV 673
Query: 437 FLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLK 475
L N++A GQ + ++R+ M + + ++PGC + LK
Sbjct: 674 VLCNIHASIGQRAEEGQLRKEMGLKGVRKVPGCSWILLK 712
Score = 98.6 bits (244), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 76/279 (27%), Positives = 131/279 (46%), Gaps = 22/279 (7%)
Query: 77 QMIKNGFMPNSYTFVSLFGSCAKTGCVERG-GMCHGLALKNGVDFELPVMNSLINMYGCF 135
+M G + + SL +K G ++ + + +N V + N++++ Y
Sbjct: 66 EMPNRGVLDRVVCWTSLLSKFSKNGFIDEARALFEIMPERNVVTY-----NAMLSGYVQC 120
Query: 136 GAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYS 195
G + A F +M R+++SW S++ G +G + A ELF++MPERNVVSWN M+ G
Sbjct: 121 GRLSDACRFFEEMPERNVVSWTSLLCGLANAGRIGEARELFNVMPERNVVSWNSMLVGLI 180
Query: 196 KSGNPGCSLKLFREM-MKSGFRGNDKTMASVLTACGRSARFNEGRSV-HGYTVRTSLKPN 253
+SG + ++F EM +KS N ++ +R E R + G R N
Sbjct: 181 RSGQLEEARRVFNEMPVKSQVSWN-----VMIAGYAEHSRMEEARVLFDGMGDR-----N 230
Query: 254 IILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVN 313
++ T++I Y + V+ +F M +RN+V W AMI G +G +E + LF +
Sbjct: 231 VVTWTSMISGYCRAGNVQEGYCLFQKMPERNVVSWTAMIGGFAWNGFYKEALLLFLEMKG 290
Query: 314 GTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMI 352
+ P++ TFI + AC G ++ +I
Sbjct: 291 NY----DMKPNDETFISLAYACAGIGFPHLGMQFHAHLI 325
Score = 48.1 bits (113), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 48/209 (22%), Positives = 88/209 (42%), Gaps = 34/209 (16%)
Query: 224 SVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADR 283
S + C R E R + + ++ T+L+ +SK ++ A+ +F+ M +R
Sbjct: 46 SQILECLSQQRLREARHMLDEMPNRGVLDRVVCWTSLLSKFSKNGFIDEARALFEIMPER 105
Query: 284 NLVCWNAMILGHCIHGK-----------PEEGIKLFTALVNGTVAGGSIS---------P 323
N+V +NAM+ G+ G+ PE + +T+L+ G G I P
Sbjct: 106 NVVTYNAMLSGYVQCGRLSDACRFFEEMPERNVVSWTSLLCGLANAGRIGEARELFNVMP 165
Query: 324 DE--ITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAE 381
+ +++ ++ +R+ L E R+ F +M ++ N M YA EEA
Sbjct: 166 ERNVVSWNSMLVGLIRSGQLEEARRVFNEMPVKSQVSWN-----VMIAGYAEHSRMEEAR 220
Query: 382 EILRKMPEDNDNMSFESIMWVSLLS-LCR 409
+ M + N + W S++S CR
Sbjct: 221 VLFDGMGDRN------VVTWTSMISGYCR 243
>gi|218186878|gb|EEC69305.1| hypothetical protein OsI_38371 [Oryza sativa Indica Group]
Length = 560
Score = 225 bits (574), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 148/499 (29%), Positives = 238/499 (47%), Gaps = 57/499 (11%)
Query: 6 QIQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCI--NNPGTFCVNAVIKAYS 63
Q+ AHL+ GL + + L+ S+ SP + VF + + + A I AY+
Sbjct: 29 QLHAHLLIRGLPLP-ARAAVALVASSS---SPRHARAVFDSVPAASANVYLWTATISAYA 84
Query: 64 NSC---------VPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLAL 114
V + V + M+ +G PN++T S+ C+K V G H
Sbjct: 85 RHTSSSSSHALEVAGEAVALFALMLWSGPRPNAFTVTSVIKCCSKVRAVHEGLQVHAFLA 144
Query: 115 KNGV------------DF---------------ELPVMNSLI--NMYGC---FGAMDCAR 142
K G+ D E+PV N ++ M C G M AR
Sbjct: 145 KAGLGCSSVHVGAALLDLYGNIGLVGDARRVFDEMPVKNVVVGNTMVACNVRAGDMGAAR 204
Query: 143 NMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGC 202
+F M+ RD ISWN+++SG++ GD + ELFD M RNV SWN MI+ S+ G+
Sbjct: 205 EVFDGMAERDPISWNTLMSGYLHLGDTATVRELFDEMTVRNVNSWNTMIAACSEEGSLAD 264
Query: 203 SLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALID 262
++K+F M +GF + TMA +++AC + VHG ++ ++ N + +LID
Sbjct: 265 TVKVFNRMRATGFEPDAATMAVLMSACAQLGSLTIAGQVHGLLQKSCVEMNCHVQNSLID 324
Query: 263 LYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSIS 322
+Y+KC + AQ +F ++ V +N MI+ HG + + LF A+V+ +
Sbjct: 325 MYAKCGCISQAQFLFTETYPKDTVSYNVMIIAFAQHGHARDALDLFNAMVD-----SGLQ 379
Query: 323 PDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEE 382
PD +TF+GV+ AC A L+ G+ YF M Y ++ + HY C+ +LY A L EEA
Sbjct: 380 PDAVTFLGVLSACAHAGLVEYGKNYFELMKTTYAVQQSPDHYACVVDLYGRAGLIEEAHC 439
Query: 383 ILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVY 442
++ MP + + +W +LL+ CR V + E AK + ++P++ Y L N
Sbjct: 440 FVKTMP-----VKPHAGVWGALLNACRKHCHVDVGEIAAKELIRIEPKNPGNYVLLRNTL 494
Query: 443 AVAGQWEDVARVRELMKKR 461
A QW+ V V+ M+++
Sbjct: 495 ARGQQWDAVEDVQLSMRRK 513
>gi|296090723|emb|CBI41122.3| unnamed protein product [Vitis vinifera]
Length = 634
Score = 225 bits (574), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 135/462 (29%), Positives = 227/462 (49%), Gaps = 44/462 (9%)
Query: 25 INLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSNSCVPD-QGVVFYLQMIKNGF 83
+++ A GS D + VF+ + A+I AY+ S D + + + +MI
Sbjct: 98 VDMYAKCAADGSVDDSRKVFEQMPEHNVMSWTAIITAYAQSGECDKEAIELFCKMISGHI 157
Query: 84 MPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARN 143
PN ++F S+ +C G + A+K G+ V NSLI+MY
Sbjct: 158 RPNHFSFSSVLKACGNLSDPYTGEQVYSYAVKLGIASVNCVGNSLISMYA---------- 207
Query: 144 MFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCS 203
RSG M A + FDI+ E+N+VS+N ++ GY+K+ +
Sbjct: 208 ---------------------RSGRMEDARKAFDILFEKNLVSYNAIVDGYAKNLKSEEA 246
Query: 204 LKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDL 263
LF E+ +G + T AS+L+ +G +HG ++ K N + ALI +
Sbjct: 247 FLLFNEIADTGIGISAFTFASLLSGAASIGAMGKGEQIHGRLLKGGYKSNQCICNALISM 306
Query: 264 YSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALV-NGTVAGGSIS 322
YS+C +E A +VF+ M DRN++ W +MI G HG +++F ++ GT
Sbjct: 307 YSRCGNIEAAFQVFNEMEDRNVISWTSMITGFAKHGFATRALEMFHKMLETGT------K 360
Query: 323 PDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEE 382
P+EIT++ V+ AC +++EG+K+F M + I P HY CM +L + L EA E
Sbjct: 361 PNEITYVAVLSACSHVGMISEGQKHFNSMYKEHGIVPRMEHYACMVDLLGRSGLLVEAME 420
Query: 383 ILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVY 442
+ MP + ++++W +LL CR G + A+ ++ +P D + Y L N++
Sbjct: 421 FINSMP-----LMADALVWRTLLGACRVHGNTELGRHAAEMILEQEPDDPAAYILLSNLH 475
Query: 443 AVAGQWEDVARVRELMKKRRMGRMPGCRLVDLKEVVEKLKVG 484
A AGQW+DV ++R+ MK+R + + GC ++++ V + VG
Sbjct: 476 ASAGQWKDVVKIRKSMKERNLIKEAGCSWIEVENRVHRFHVG 517
Score = 112 bits (280), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 82/346 (23%), Positives = 160/346 (46%), Gaps = 50/346 (14%)
Query: 66 CVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVM 125
C D + +L M +G++P+ +T+ S+ +C + G + G H ++ G+ ++ V
Sbjct: 36 CARD-AIDLFLDMELSGYVPDRFTYSSVLSACTELGLLALGKQLHSRVIRLGLALDVCVG 94
Query: 126 NSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVV 185
SL++MY CA + G + + ++F+ MPE NV+
Sbjct: 95 CSLVDMYA-----KCAAD-----------------------GSVDDSRKVFEQMPEHNVM 126
Query: 186 SWNIMISGYSKSGN-PGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGY 244
SW +I+ Y++SG +++LF +M+ R N + +SVL ACG + G V+ Y
Sbjct: 127 SWTAIITAYAQSGECDKEAIELFCKMISGHIRPNHFSFSSVLKACGNLSDPYTGEQVYSY 186
Query: 245 TVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEG 304
V+ + + +LI +Y++ ++E A++ FD + ++NLV +NA++ G+ + K EE
Sbjct: 187 AVKLGIASVNCVGNSLISMYARSGRMEDARKAFDILFEKNLVSYNAIVDGYAKNLKSEEA 246
Query: 305 IKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHY 364
LF +A I TF ++ + +G + ++ +K +
Sbjct: 247 FLLFN-----EIADTGIGISAFTFASLLSGAASIGAMGKGEQIHGRL-----LKGGYKSN 296
Query: 365 WCMAN----LYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLS 406
C+ N +Y+ E A ++ +M + N I W S+++
Sbjct: 297 QCICNALISMYSRCGNIEAAFQVFNEMEDRN------VISWTSMIT 336
Score = 105 bits (262), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 65/230 (28%), Positives = 121/230 (52%), Gaps = 18/230 (7%)
Query: 170 SAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTAC 229
+ A+++FD MPERN+V+W +MI+ +++ G ++ LF +M SG+ + T +SVL+AC
Sbjct: 7 APAYKVFDKMPERNLVTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSAC 66
Query: 230 GRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQ---KVEVAQRVFDSMADRNLV 286
G+ +H +R L ++ + +L+D+Y+KC V+ +++VF+ M + N++
Sbjct: 67 TELGLLALGKQLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPEHNVM 126
Query: 287 CWNAMILGHCIHGK-PEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGR 345
W A+I + G+ +E I+LF +++ G I P+ +F V+ AC G
Sbjct: 127 SWTAIITAYAQSGECDKEAIELFCKMIS-----GHIRPNHFSFSSVLKACGNLSDPYTGE 181
Query: 346 KYFRQMIDFYKIKPNFAHYWCMAN----LYAGAELTEEAEEILRKMPEDN 391
+ + Y +K A C+ N +YA + E+A + + E N
Sbjct: 182 QVYS-----YAVKLGIASVNCVGNSLISMYARSGRMEDARKAFDILFEKN 226
>gi|357520897|ref|XP_003630737.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355524759|gb|AET05213.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 447
Score = 225 bits (574), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 125/423 (29%), Positives = 212/423 (50%), Gaps = 43/423 (10%)
Query: 48 NNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGG 107
+NP +F N +I++Y+ P + Y+ M++ G +P+ YT + + +++ ++ G
Sbjct: 58 SNPASFNWNNIIRSYTRLESPQNALRIYVSMLRAGVLPDRYTLPIVLKAVSQSFAIQLGQ 117
Query: 108 MCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSG 167
H +K G+ + IN+Y ++G
Sbjct: 118 QVHSYGIKLGLQSNEYCESGFINLY-------------------------------CKAG 146
Query: 168 DMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLT 227
D +AH++FD E + SWN +ISG S+ G ++ +F +M + GF + TM SV++
Sbjct: 147 DFDSAHKVFDENHEPKLGSWNALISGLSQGGLAMDAIVVFVDMKRHGFEPDGITMVSVMS 206
Query: 228 ACGRSARFNEGRSVHGYT--VRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNL 285
ACG +H Y +T+ I++ +LID+Y KC ++++A VF +M DRN+
Sbjct: 207 ACGSIGDLYLALQLHKYVFQAKTNEWTVILMSNSLIDMYGKCGRMDLAYEVFATMEDRNV 266
Query: 286 VCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGR 345
W +MI+G+ +HG +E + F + V P+ +TFIGV+ ACV + EGR
Sbjct: 267 SSWTSMIVGYAMHGHAKEALGCFHCMRESGV-----KPNYVTFIGVLSACVHGGTVQEGR 321
Query: 346 KYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLL 405
YF M + Y I P HY CM +L A L ++A ++ +MP M S++W L+
Sbjct: 322 FYFDMMKNIYGITPQLQHYGCMVDLLGRAGLFDDARRMVEEMP-----MKPNSVVWGCLM 376
Query: 406 SLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGR 465
C G V M E +A++ ++P + Y L N+YA G W++V R+R MK+ R+ +
Sbjct: 377 GACEKHGNVDMAEWVAENLQALEPWNEGVYVVLSNIYANKGLWKEVERIRSFMKEGRLAK 436
Query: 466 MPG 468
+P
Sbjct: 437 IPA 439
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 92/382 (24%), Positives = 154/382 (40%), Gaps = 56/382 (14%)
Query: 158 SIVSGHVRSGDMSA--AHELFDIMPERNVVS--WNIMISGYSKSGNPGCSLKLFREMMKS 213
+++S R D++ AH L E N S WN +I Y++ +P +L+++ M+++
Sbjct: 32 TLLSNTTRIRDLNQIYAHILLTRFLESNPASFNWNNIIRSYTRLESPQNALRIYVSMLRA 91
Query: 214 GFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVA 273
G + T+ VL A +S G+ VH Y ++ L+ N ++ I+LY K + A
Sbjct: 92 GVLPDRYTLPIVLKAVSQSFAIQLGQQVHSYGIKLGLQSNEYCESGFINLYCKAGDFDSA 151
Query: 274 QRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVIC 333
+VFD + L WNA+I G G + I +F + PD IT + V+
Sbjct: 152 HKVFDENHEPKLGSWNALISGLSQGGLAMDAIVVFVDMKR-----HGFEPDGITMVSVMS 206
Query: 334 ACVRA---ELLTEGRKYFRQ--------------MIDFYKI---------------KPNF 361
AC L + KY Q +ID Y N
Sbjct: 207 ACGSIGDLYLALQLHKYVFQAKTNEWTVILMSNSLIDMYGKCGRMDLAYEVFATMEDRNV 266
Query: 362 AHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVA---MVE 418
+ + M YA +EA M E ++ + ++ +LS C G V
Sbjct: 267 SSWTSMIVGYAMHGHAKEALGCFHCMRESGVKPNY--VTFIGVLSACVHGGTVQEGRFYF 324
Query: 419 RLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRL------- 471
+ K+ + PQ Y ++++ AG ++D R+ E M + + GC +
Sbjct: 325 DMMKNIYGITPQ-LQHYGCMVDLLGRAGLFDDARRMVEEMPMKPNSVVWGCLMGACEKHG 383
Query: 472 -VDLKE-VVEKLKVGHFWRGGM 491
VD+ E V E L+ W G+
Sbjct: 384 NVDMAEWVAENLQALEPWNEGV 405
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 73/282 (25%), Positives = 114/282 (40%), Gaps = 51/282 (18%)
Query: 25 INLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFM 84
INL + DF S VF + P NA+I S + +V ++ M ++GF
Sbjct: 139 INLYCKAGDFDSAHK---VFDENHEPKLGSWNALISGLSQGGLAMDAIVVFVDMKRHGFE 195
Query: 85 PNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVM--NSLINMYGCFGAMDCAR 142
P+ T VS+ +C G + H + + ++ NSLI+MYG G MD A
Sbjct: 196 PDGITMVSVMSACGSIGDLYLALQLHKYVFQAKTNEWTVILMSNSLIDMYGKCGRMDLAY 255
Query: 143 NMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGC 202
+F M R++ SW S MI GY+ G+
Sbjct: 256 EVFATMEDRNVSSWTS-------------------------------MIVGYAMHGHAKE 284
Query: 203 SLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGR-------SVHGYTVRTSLKPNII 255
+L F M +SG + N T VL+AC EGR +++G T P +
Sbjct: 285 ALGCFHCMRESGVKPNYVTFIGVLSACVHGGTVQEGRFYFDMMKNIYGIT------PQLQ 338
Query: 256 LDTALIDLYSKCQKVEVAQRVFDSMADR-NLVCWNAMILGHC 296
++DL + + A+R+ + M + N V W + +G C
Sbjct: 339 HYGCMVDLLGRAGLFDDARRMVEEMPMKPNSVVWGCL-MGAC 379
>gi|147771783|emb|CAN60259.1| hypothetical protein VITISV_007741 [Vitis vinifera]
Length = 602
Score = 225 bits (574), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 126/442 (28%), Positives = 222/442 (50%), Gaps = 10/442 (2%)
Query: 43 VFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGC 102
VF + PG +I+AY P++ + + M + G P+ ++ +C G
Sbjct: 148 VFDEMRQPGLVLWTLIIRAYVCVTFPEKALELFRTMREVGLTPDMVAVSTVVSACGLLGD 207
Query: 103 VERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSG 162
+ H K+G++ + V ++LI+ YG G++D A F + ++++ WN+++
Sbjct: 208 LGVAKAMHCFIEKSGIEVDAFVSSTLISTYGECGSLDYAYRFFQETPMKNIVVWNTMIHQ 267
Query: 163 HVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTM 222
V ++ +LF MP+R+VVSWN MI G+++ G +L F EM SG N T+
Sbjct: 268 SVEHNNLELGKQLFQSMPDRDVVSWNSMIGGFARIGQYQEALTWFHEMEFSGVSPNALTL 327
Query: 223 ASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMAD 282
S L+AC + G +H Y + + + LD++LID+YSKC ++ A ++F+
Sbjct: 328 LSTLSACASHGALDTGAWIHAYVDKNDMNRDGSLDSSLIDMYSKCGDIDKAVQIFEESTR 387
Query: 283 RNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLT 342
R+L W +++ G +HG+ E+ + F+ + V PD++T +GV+ AC A LL
Sbjct: 388 RDLFTWTSIVCGLAMHGRGEKALHYFSKMKEAQV-----QPDDVTMVGVLSACAHAGLLD 442
Query: 343 EGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWV 402
+G YF+ M + + P HY M +L +EA +++ MP M I+W
Sbjct: 443 QGWWYFQSMEKVFGLVPKVEHYGXMVDLLGRMGCLKEAYDLIMGMP-----MEANEIIWG 497
Query: 403 SLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRR 462
+ LS CR V + E A+ + + P+D L N+YA +W+ +R+ +KK+
Sbjct: 498 AFLSACRVHNNVELGEVAARRLLGLXPRDPWARVMLSNMYAEEAKWDRSMGLRKEIKKKG 557
Query: 463 MGRMPGCRLVDLKEVVEKLKVG 484
+ + PGC +++ V VG
Sbjct: 558 LKKSPGCSSIEVNGSVHGFLVG 579
Score = 88.2 bits (217), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 64/292 (21%), Positives = 122/292 (41%), Gaps = 41/292 (14%)
Query: 69 DQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSL 128
D +++Y+Q ++ G PN +TF+ L + V+ G H ++ G V +L
Sbjct: 73 DPPLLYYMQGLRAGLRPNGHTFMYLLKALVSGQEVKEGEEVHASVVRTGFACSEFVSGAL 132
Query: 129 INMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWN 188
+ Y G + R +F +M L+ W I+ +V PE+
Sbjct: 133 LGFYVACGLVGKGRQVFDEMRQPGLVLWTLIIRAYVCV-----------TFPEK------ 175
Query: 189 IMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRT 248
+L+LFR M + G + +++V++ACG +++H + ++
Sbjct: 176 --------------ALELFRTMREVGLTPDMVAVSTVVSACGLLGDLGVAKAMHCFIEKS 221
Query: 249 SLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLF 308
++ + + + LI Y +C ++ A R F +N+V WN MI H E G +LF
Sbjct: 222 GIEVDAFVSSTLISTYGECGSLDYAYRFFQETPMKNIVVWNTMIHQSVEHNNLELGKQLF 281
Query: 309 TALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPN 360
++ + D +++ +I R E +F +M +F + PN
Sbjct: 282 QSMPD---------RDVVSWNSMIGGFARIGQYQEALTWFHEM-EFSGVSPN 323
Score = 66.2 bits (160), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 45/157 (28%), Positives = 69/157 (43%), Gaps = 11/157 (7%)
Query: 183 NVVSWNIMISGYSKSG----NPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEG 238
NV WN MI ++G +P L + + +++G R N T +L A EG
Sbjct: 53 NVFVWNTMIRKQVENGLITRDP--PLLYYMQGLRAGLRPNGHTFMYLLKALVSGQEVKEG 110
Query: 239 RSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIH 298
VH VRT + + AL+ Y C V ++VFD M LV W +I +
Sbjct: 111 EEVHASVVRTGFACSEFVSGALLGFYVACGLVGKGRQVFDEMRQPGLVLWTLIIRAYVCV 170
Query: 299 GKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICAC 335
PE+ ++LF T+ ++PD + V+ AC
Sbjct: 171 TFPEKALELFR-----TMREVGLTPDMVAVSTVVSAC 202
>gi|15235498|ref|NP_192184.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75213324|sp|Q9SY02.1|PP301_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g02750
gi|4263522|gb|AAD15348.1| hypothetical protein [Arabidopsis thaliana]
gi|7269760|emb|CAB77760.1| hypothetical protein [Arabidopsis thaliana]
gi|332656824|gb|AEE82224.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 781
Score = 225 bits (574), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 127/442 (28%), Positives = 223/442 (50%), Gaps = 20/442 (4%)
Query: 44 FKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCV 103
F +N N +I Y+ S D+ Q+ + + +T+ ++ + V
Sbjct: 242 FDSMNVRDVVSWNTIITGYAQSGKIDEA----RQLFDESPVQDVFTWTAMVSGYIQNRMV 297
Query: 104 ERG-GMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSG 162
E + + +N V + N+++ Y M+ A+ +F M R++ +WN++++G
Sbjct: 298 EEARELFDKMPERNEVSW-----NAMLAGYVQGERMEMAKELFDVMPCRNVSTWNTMITG 352
Query: 163 HVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTM 222
+ + G +S A LFD MP+R+ VSW MI+GYS+SG+ +L+LF +M + G R N +
Sbjct: 353 YAQCGKISEAKNLFDKMPKRDPVSWAAMIAGYSQSGHSFEALRLFVQMEREGGRLNRSSF 412
Query: 223 ASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMAD 282
+S L+ C G+ +HG V+ + + AL+ +Y KC +E A +F MA
Sbjct: 413 SSALSTCADVVALELGKQLHGRLVKGGYETGCFVGNALLLMYCKCGSIEEANDLFKEMAG 472
Query: 283 RNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLT 342
+++V WN MI G+ HG E ++ F ++ + PD+ T + V+ AC L+
Sbjct: 473 KDIVSWNTMIAGYSRHGFGEVALRFFESMKR-----EGLKPDDATMVAVLSACSHTGLVD 527
Query: 343 EGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWV 402
+GR+YF M Y + PN HY CM +L A L E+A +++ MP + D + +W
Sbjct: 528 KGRQYFYTMTQDYGVMPNSQHYACMVDLLGRAGLLEDAHNLMKNMPFEPD-----AAIWG 582
Query: 403 SLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRR 462
+LL R G + E A M+P++ Y L N+YA +G+W DV ++R M+ +
Sbjct: 583 TLLGASRVHGNTELAETAADKIFAMEPENSGMYVLLSNLYASSGRWGDVGKLRVRMRDKG 642
Query: 463 MGRMPGCRLVDLKEVVEKLKVG 484
+ ++PG ++++ VG
Sbjct: 643 VKKVPGYSWIEIQNKTHTFSVG 664
Score = 118 bits (296), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 77/263 (29%), Positives = 137/263 (52%), Gaps = 22/263 (8%)
Query: 126 NSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVV 185
N +I+ Y G + AR +F +M RDL+SWN ++ G+VR+ ++ A ELF+IMPER+V
Sbjct: 99 NGMISGYLRNGEFELARKLFDEMPERDLVSWNVMIKGYVRNRNLGKARELFEIMPERDVC 158
Query: 186 SWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYT 245
SWN M+SGY+++G + +F M + ND + ++L+A ++++ E +
Sbjct: 159 SWNTMLSGYAQNGCVDDARSVFDRMPEK----NDVSWNALLSAYVQNSKMEEACML---- 210
Query: 246 VRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGI 305
++ ++ L+ + K +K+ A++ FDSM R++V WN +I G+ GK +E
Sbjct: 211 FKSRENWALVSWNCLLGGFVKKKKIVEARQFFDSMNVRDVVSWNTIITGYAQSGKIDEAR 270
Query: 306 KLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYW 365
+LF S D T+ ++ ++ ++ E R+ F +M + ++ N
Sbjct: 271 QLFDE---------SPVQDVFTWTAMVSGYIQNRMVEEARELFDKMPERNEVSWN----- 316
Query: 366 CMANLYAGAELTEEAEEILRKMP 388
M Y E E A+E+ MP
Sbjct: 317 AMLAGYVQGERMEMAKELFDVMP 339
>gi|449441075|ref|XP_004138309.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g21065-like [Cucumis sativus]
Length = 562
Score = 225 bits (574), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 122/424 (28%), Positives = 221/424 (52%), Gaps = 43/424 (10%)
Query: 56 NAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALK 115
N++I+ Y + + + M K +P+S TF ++ + A+ G M HG+ ++
Sbjct: 58 NSMIRTYLDLNKHLNSLYIFALMHKFSILPDSSTFPAVLKATAQLCDTGVGKMIHGIVIQ 117
Query: 116 NGVDFELPVMNSLINMY-GCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHE 174
G ++ +L+++Y C +S A +
Sbjct: 118 MGFICDVYTSTALVHLYCTCLS--------------------------------ISDASQ 145
Query: 175 LFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSAR 234
LFD MPERN V+WN +I+GY+ + ++ FR M+ G + +++T+ VL+AC
Sbjct: 146 LFDEMPERNAVTWNALITGYTHNRKFVKAIDAFRGMLADGAQPSERTVVVVLSACSHLGA 205
Query: 235 FNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILG 294
FN+G+ +H + L+ N+ + TALID+Y+KC V ++VF+ + ++N+ WN +I G
Sbjct: 206 FNQGKWIHEFIYHNRLRLNVFVGTALIDMYAKCGAVYEVEKVFEEIREKNVYTWNVLISG 265
Query: 295 HCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDF 354
+ ++G+ + ++ F+ ++ + PDE+TF+GV+CAC L+TEGR F M
Sbjct: 266 YAMNGQGDAALQAFSRMLM-----ENFKPDEVTFLGVLCACCHQGLVTEGRWQFMSMKQQ 320
Query: 355 YKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAV 414
+ ++P HY CM +L A L EEA E+++ M + D I+W +LL CR G
Sbjct: 321 FGLQPRIEHYGCMVDLLGRAGLLEEALELIQSMSIEPD-----PIIWRALLCACRVHGNT 375
Query: 415 AMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDL 474
+ E + K ++++P + Y L N+Y+ +W +V ++R +M R + ++PGC +++
Sbjct: 376 KLGEYIIKRLIELEPNNGENYVLLSNIYSRERRWAEVGKLRGMMNLRGIRKVPGCSSIEI 435
Query: 475 KEVV 478
VV
Sbjct: 436 NNVV 439
>gi|297738034|emb|CBI27235.3| unnamed protein product [Vitis vinifera]
Length = 696
Score = 225 bits (573), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 139/468 (29%), Positives = 232/468 (49%), Gaps = 36/468 (7%)
Query: 19 NNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQM 78
+ +F L+ A G D + +F+ + N +I ++S S + + F+ M
Sbjct: 146 DKTFTNNALMAMYAKLGRVDDSKALFESFVDRDMVSWNTMISSFSQSDRFSEALAFFRLM 205
Query: 79 IKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAM 138
+ G + T S+ +C+ ++ G H L+N N LI
Sbjct: 206 VLEGVELDGVTIASVLPACSHLERLDVGKEIHAYVLRN---------NDLI--------- 247
Query: 139 DCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSG 198
N FV +++V + + + +FD + R + WN MISGY+++G
Sbjct: 248 ---ENSFVG---------SALVDMYCNCRQVESGRRVFDHILGRRIELWNAMISGYARNG 295
Query: 199 NPGCSLKLFREMMK-SGFRGNDKTMASVLTACGRS-ARFNEGRSVHGYTVRTSLKPNIIL 256
+L LF EM+K +G N TMASV+ AC S A +G+ +H Y +R L +I +
Sbjct: 296 LDEKALILFIEMIKVAGLLPNTTTMASVMPACVHSLAAIAKGKEIHAYAIRNMLASDITV 355
Query: 257 DTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTV 316
+AL+D+Y+KC + +++RVF+ M ++N++ WN +I+ +HGK EE ++LF +V
Sbjct: 356 GSALVDMYAKCGCLNLSRRVFNEMPNKNVITWNVLIMACGMHGKGEEALELFKNMVAEAG 415
Query: 317 AGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAEL 376
GG P+E+TFI V AC + L++EG F +M + ++P HY C+ +L A
Sbjct: 416 RGGEAKPNEVTFITVFAACSHSGLISEGLNLFYRMKHDHGVEPTSDHYACVVDLLGRAGQ 475
Query: 377 TEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQ 436
EEA E++ MP + D + W SLL CR V + E AK+ + ++P S Y
Sbjct: 476 LEEAYELVNTMPAEFDKVG----AWSSLLGACRIHQNVELGEVAAKNLLHLEPNVASHYV 531
Query: 437 FLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLKEVVEKLKVG 484
L N+Y+ AG W VR+ M++ + + PGC ++ ++ V K G
Sbjct: 532 LLSNIYSSAGLWNKAMEVRKNMRQMGVKKEPGCSWIEFRDEVHKFMAG 579
Score = 138 bits (347), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 102/364 (28%), Positives = 176/364 (48%), Gaps = 35/364 (9%)
Query: 70 QGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGV-DFELPVMNSL 128
+ + Y++M +G P+++ F ++ + + ++ G H A+K G + V N+L
Sbjct: 75 EAISTYIEMTVSGARPDNFAFPAVLKAVSGLQDLKTGEQIHAAAVKFGYGSSSVTVANTL 134
Query: 129 INMYG-CFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSW 187
+NMYG C G D + N++++ + + G + + LF+ +R++VSW
Sbjct: 135 VNMYGKCGGIGD------------KTFTNNALMAMYAKLGRVDDSKALFESFVDRDMVSW 182
Query: 188 NIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVR 247
N MIS +S+S +L FR M+ G + T+ASVL AC R + G+ +H Y +R
Sbjct: 183 NTMISSFSQSDRFSEALAFFRLMVLEGVELDGVTIASVLPACSHLERLDVGKEIHAYVLR 242
Query: 248 TS-LKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIK 306
+ L N + +AL+D+Y C++VE +RVFD + R + WNAMI G+ +G E+ +
Sbjct: 243 NNDLIENSFVGSALVDMYCNCRQVESGRRVFDHILGRRIELWNAMISGYARNGLDEKALI 302
Query: 307 LFTALVNGTVAGGSISPDEITFIGVICACVRA-ELLTEGRKYFRQMIDFYKIKPNFAHYW 365
LF ++ VAG + P+ T V+ ACV + + +G++ I Y I+ A
Sbjct: 303 LFIEMIK--VAG--LLPNTTTMASVMPACVHSLAAIAKGKE-----IHAYAIRNMLASDI 353
Query: 366 ----CMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLA 421
+ ++YA + + +MP N I W L+ C G L
Sbjct: 354 TVGSALVDMYAKCGCLNLSRRVFNEMPNKN------VITWNVLIMACGMHGKGEEALELF 407
Query: 422 KSFV 425
K+ V
Sbjct: 408 KNMV 411
Score = 55.1 bits (131), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 44/188 (23%), Positives = 80/188 (42%), Gaps = 26/188 (13%)
Query: 180 PERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGR 239
P R+ SW + ++S + ++ + EM SG R ++ +VL A G
Sbjct: 53 PSRSTASWVDALRSRTRSNDFREAISTYIEMTVSGARPDNFAFPAVLKAVSGLQDLKTGE 112
Query: 240 SVH------GYTVRTSLKPNIIL---------------DTALIDLYSKCQKVEVAQRVFD 278
+H GY + N ++ + AL+ +Y+K +V+ ++ +F+
Sbjct: 113 QIHAAAVKFGYGSSSVTVANTLVNMYGKCGGIGDKTFTNNALMAMYAKLGRVDDSKALFE 172
Query: 279 SMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRA 338
S DR++V WN MI + E + F +V + G + D +T V+ AC
Sbjct: 173 SFVDRDMVSWNTMISSFSQSDRFSEALAFFRLMV---LEG--VELDGVTIASVLPACSHL 227
Query: 339 ELLTEGRK 346
E L G++
Sbjct: 228 ERLDVGKE 235
>gi|225454898|ref|XP_002276015.1| PREDICTED: pentatricopeptide repeat-containing protein At4g39952,
mitochondrial-like [Vitis vinifera]
Length = 744
Score = 225 bits (573), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 134/474 (28%), Positives = 236/474 (49%), Gaps = 44/474 (9%)
Query: 27 LLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPN 86
LL + G+P+ F + N ++I AYS + + + +M+ +G P+
Sbjct: 279 LLSMYSKCGNPEEAHRSFCEVLNKDIISWTSMISAYSRMGWATECIDMFWEMLVSGIYPD 338
Query: 87 SYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFV 146
+ S + + V HGL ++ + V N+L++MY FG + A F
Sbjct: 339 GIVISCMLSSFSNSMRVFEAKAFHGLIIRRHYTLDQMVQNALLSMYCKFGFLKLAEKFFG 398
Query: 147 QMSPRDLISWNSIVSGHV--------------------------------RSGDMSAAHE 174
+++ ++ +WN +VSG+ +SG+++ A
Sbjct: 399 RVNEQNFEAWNLMVSGYGATHLARSIHCYMIKNLMDENVSVNNSLIDMYGKSGNLTIARR 458
Query: 175 LFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSAR 234
+F +P R++V+WN +IS Y+ G+ +L L+ +M+ + N T+ SVL+AC A
Sbjct: 459 IFCRIP-RDIVTWNTLISSYAHCGHFAEALSLYDKMVLEDLKPNSATLVSVLSACSHLAS 517
Query: 235 FNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILG 294
EG VH Y + N+ + TALID+Y+KC ++E ++ +F+SM +R+++ WN MI G
Sbjct: 518 LEEGEKVHNYINGGKFEFNLSIATALIDMYAKCGQLEKSREIFNSMHERDVITWNVMISG 577
Query: 295 HCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDF 354
+ +HG I+ F + S P+ +TF+ V+ AC A L+ EG+ F +M D
Sbjct: 578 YGMHGDARSAIEFFQQMEE-----SSAKPNGLTFLAVLSACAHAGLVKEGKYLFGKMQD- 631
Query: 355 YKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAV 414
Y + PN HY CM +L + +EAE ++ MP +S + +W +LLS C+ +
Sbjct: 632 YSVAPNLKHYACMVDLLGRSGNLQEAEALVLSMP-----ISPDGGVWGALLSSCKIHNEI 686
Query: 415 AMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPG 468
M R+AK +D D ++ Y + N+Y+ G+WE+ + R +MK+R + + G
Sbjct: 687 EMGIRIAKHAIDSDVENDGYYVMISNMYSSIGKWEEAEKARGIMKERGVRKKTG 740
Score = 119 bits (299), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 94/338 (27%), Positives = 157/338 (46%), Gaps = 42/338 (12%)
Query: 1 MKQLLQIQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIK 60
+K LLQ A +ITSG + NN F L+ A F P + +F I + F N++IK
Sbjct: 48 LKTLLQSHAFIITSG-YSNNIFIASKLISLYASFHKPSCSTELFDEIPHRDAFLWNSIIK 106
Query: 61 AYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGV-D 119
A+ ++ + + FY M + +PN +T + SCA+ V G HGL K G+
Sbjct: 107 AHFSNGEYSRALDFYQWMRASEALPNHFTIPMIVASCAELELVNYGRSIHGLVSKLGLFS 166
Query: 120 FELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIM 179
V +S + MY G ++ A +F ++ RD+++W ++V G V++G+ E
Sbjct: 167 GSSAVGSSFVYMYSKCGVLEEAYGVFDEILFRDVVAWTALVIGCVQNGESKMGLE----- 221
Query: 180 PERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGR 239
C ++ R + G R N +T+ ACG EGR
Sbjct: 222 ----------------------CLCEMHR-IGGDGERPNFRTLEGGFQACGNLGALLEGR 258
Query: 240 SVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHG 299
+HG V+T + + ++ + L+ +YSKC E A R F + +++++ W +MI + G
Sbjct: 259 CLHGLVVKTGMDYSQVVQSLLLSMYSKCGNPEEAHRSFCEVLNKDIISWTSMISAYSRMG 318
Query: 300 KPEEGIKLF-TALVNGTVAGGSISPDEITFIGVICACV 336
E I +F LV+G I PD G++ +C+
Sbjct: 319 WATECIDMFWEMLVSG------IYPD-----GIVISCM 345
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 87/348 (25%), Positives = 148/348 (42%), Gaps = 53/348 (15%)
Query: 81 NGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDC 140
+G PN T F +C G + G HGL +K G+D+ V + L++MY G +
Sbjct: 232 DGERPNFRTLEGGFQACGNLGALLEGRCLHGLVVKTGMDYSQVVQSLLLSMYSKCGNPEE 291
Query: 141 ARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELF------DIMPERNVVS-------- 186
A F ++ +D+ISW S++S + R G + ++F I P+ V+S
Sbjct: 292 AHRSFCEVLNKDIISWTSMISAYSRMGWATECIDMFWEMLVSGIYPDGIVISCMLSSFSN 351
Query: 187 -------------------------WNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKT 221
N ++S Y K G + K F + + F
Sbjct: 352 SMRVFEAKAFHGLIIRRHYTLDQMVQNALLSMYCKFGFLKLAEKFFGRVNEQNFE----- 406
Query: 222 MASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMA 281
A L G A + RS+H Y ++ + N+ ++ +LID+Y K + +A+R+F +
Sbjct: 407 -AWNLMVSGYGAT-HLARSIHCYMIKNLMDENVSVNNSLIDMYGKSGNLTIARRIFCRIP 464
Query: 282 DRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELL 341
R++V WN +I + G E + L+ +V + P+ T + V+ AC L
Sbjct: 465 -RDIVTWNTLISSYAHCGHFAEALSLYDKMVL-----EDLKPNSATLVSVLSACSHLASL 518
Query: 342 TEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPE 389
EG K I+ K + N + + ++YA E++ EI M E
Sbjct: 519 EEGEK-VHNYINGGKFEFNLSIATALIDMYAKCGQLEKSREIFNSMHE 565
Score = 38.5 bits (88), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 38/153 (24%), Positives = 64/153 (41%), Gaps = 5/153 (3%)
Query: 12 ITSGLF-FNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSNSCVPDQ 70
I G F FN S T L+ A G + + +F ++ N +I Y
Sbjct: 528 INGGKFEFNLSIATA-LIDMYAKCGQLEKSREIFNSMHERDVITWNVMISGYGMHGDARS 586
Query: 71 GVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLIN 130
+ F+ QM ++ PN TF+++ +CA G V+ G G V L +++
Sbjct: 587 AIEFFQQMEESSAKPNGLTFLAVLSACAHAGLVKEGKYLFGKMQDYSVAPNLKHYACMVD 646
Query: 131 MYGCFGAMDCARNMFVQM--SPRDLISWNSIVS 161
+ G G + A + + M SP D W +++S
Sbjct: 647 LLGRSGNLQEAEALVLSMPISP-DGGVWGALLS 678
>gi|222628408|gb|EEE60540.1| hypothetical protein OsJ_13880 [Oryza sativa Japonica Group]
Length = 594
Score = 225 bits (573), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 113/383 (29%), Positives = 208/383 (54%), Gaps = 10/383 (2%)
Query: 69 DQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSL 128
++ ++ + M ++ +P+ ++ +CA T + G H L + + V +L
Sbjct: 152 EEALLLFHSMKRSRVVPDQVIIATVLSTCAHTRNLRFGKAIHSYMLVSDTLIDAQVSCAL 211
Query: 129 INMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWN 188
+NMY M+ A ++ ++S ++++ ++V G+ ++G + AH +F+ MP ++VVSW+
Sbjct: 212 MNMYASCADMEMAEKLYNRVSEKEIVLSTTMVYGYAKNGKVEIAHSIFNGMPAKDVVSWS 271
Query: 189 IMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRT 248
MI+GY++S P +L LF +M +SG + ++ TM SV++AC + R +H +
Sbjct: 272 AMIAGYAESSKPMEALNLFHDMQRSGVKPDEITMLSVISACANVGALEKARCIHSFVENH 331
Query: 249 SLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLF 308
S+ + + ALID++SKC + +A VF++M +N+V W ++I +HG + LF
Sbjct: 332 SMCKILPIGNALIDMFSKCGSLTLALDVFNAMPQKNVVTWTSIITASAMHGDGRSALTLF 391
Query: 309 TALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMA 368
+ I P+ +TF+G++ AC A L+ EGR F+ M+ Y+I+P HY CM
Sbjct: 392 E-----NMKSEGIQPNGVTFLGLLYACCHAGLVEEGRLLFKIMVQQYRIEPMHEHYGCMV 446
Query: 369 NLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMD 428
+L A+L +A ++++ M ++ ++W SLL+ CR G + + AK +++D
Sbjct: 447 DLLGRAKLLGQAADLIQSM-----HLRPNVVIWGSLLAACRMHGDLELGTFAAKKILELD 501
Query: 429 PQDFSRYQFLLNVYAVAGQWEDV 451
P L N+YA G W DV
Sbjct: 502 PNHGGAQVLLSNIYAEYGNWNDV 524
Score = 97.4 bits (241), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 86/362 (23%), Positives = 141/362 (38%), Gaps = 80/362 (22%)
Query: 85 PNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNM 144
P SL + A + G HGLA + G + + V +L+ Y G ++ AR +
Sbjct: 67 PGRRALPSLLRAIAFARSLGTAGAAHGLAFRVGAEVDGFVGTALVRAYAACGRVEDARRV 126
Query: 145 FVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSL 204
F M RDL V+W +M+ Y ++ N +L
Sbjct: 127 FDGMPDRDL-------------------------------VAWGVMLDCYCQARNYEEAL 155
Query: 205 KLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTV------------------ 246
LF M +S + +A+VL+ C + G+++H Y +
Sbjct: 156 LLFHSMKRSRVVPDQVIIATVLSTCAHTRNLRFGKAIHSYMLVSDTLIDAQVSCALMNMY 215
Query: 247 --------------RTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMI 292
R S K I+L T ++ Y+K KVE+A +F+ M +++V W+AMI
Sbjct: 216 ASCADMEMAEKLYNRVSEK-EIVLSTTMVYGYAKNGKVEIAHSIFNGMPAKDVVSWSAMI 274
Query: 293 LGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGR--KYFRQ 350
G+ KP E + LF + V PDEIT + VI AC L + R F +
Sbjct: 275 AGYAESSKPMEALNLFHDMQRSGV-----KPDEITMLSVISACANVGALEKARCIHSFVE 329
Query: 351 MIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRF 410
KI P + ++++ A ++ MP+ N + W S+++
Sbjct: 330 NHSMCKILPIGN---ALIDMFSKCGSLTLALDVFNAMPQKN------VVTWTSIITASAM 380
Query: 411 QG 412
G
Sbjct: 381 HG 382
Score = 81.6 bits (200), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 59/251 (23%), Positives = 109/251 (43%), Gaps = 33/251 (13%)
Query: 56 NAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALK 115
+A+I Y+ S P + + + M ++G P+ T +S+ +CA G +E+ H
Sbjct: 271 SAMIAGYAESSKPMEALNLFHDMQRSGVKPDEITMLSVISACANVGALEKARCIHSFVEN 330
Query: 116 NGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHEL 175
+ + LP+ N+LI+M+ G++ A ++F M +++++W SI++ GD +A
Sbjct: 331 HSMCKILPIGNALIDMFSKCGSLTLALDVFNAMPQKNVVTWTSIITASAMHGDGRSA--- 387
Query: 176 FDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARF 235
L LF M G + N T +L AC +
Sbjct: 388 ----------------------------LTLFENMKSEGIQPNGVTFLGLLYACCHAGLV 419
Query: 236 NEGRSVHGYTVRT-SLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADR-NLVCWNAMIL 293
EGR + V+ ++P ++DL + + + A + SM R N+V W +++
Sbjct: 420 EEGRLLFKIMVQQYRIEPMHEHYGCMVDLLGRAKLLGQAADLIQSMHLRPNVVIWGSLLA 479
Query: 294 GHCIHGKPEEG 304
+HG E G
Sbjct: 480 ACRMHGDLELG 490
>gi|356506884|ref|XP_003522204.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g47840-like [Glycine max]
Length = 752
Score = 225 bits (573), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 139/479 (29%), Positives = 230/479 (48%), Gaps = 44/479 (9%)
Query: 7 IQAHLITSGLFFNNSFWTINLLKHSADF-GSPDYTVLVFKCINNPGTFCVNAVIKAYSNS 65
I I G F+ S + IN L + G DY + +F+ + P +I Y
Sbjct: 280 IHTQTIKQG--FDESSFVINTLATMYNKCGKADYVMRLFEKMKMPDVVSWTTLITTYVQK 337
Query: 66 CVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVM 125
+ V + +M K+ PN YTF ++ +CA + G HG L+ G+ L V
Sbjct: 338 GEEEHAVEAFKRMRKSNVSPNKYTFAAVISACANLAIAKWGEQIHGHVLRLGLVDALSVA 397
Query: 126 NSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVV 185
NS++ +Y G + A +F ++ +D+ISW++I++ + + G A E FD +
Sbjct: 398 NSIVTLYSKSGLLKSASLVFHGITRKDIISWSTIIAVYSQGG---YAKEAFDYL------ 448
Query: 186 SWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYT 245
SW M + G + N+ ++SVL+ CG A +G+ VH +
Sbjct: 449 SW----------------------MRREGPKPNEFALSSVLSVCGSMALLEQGKQVHAHV 486
Query: 246 VRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGI 305
+ + ++ +ALI +YSKC VE A ++F+ M N++ W AMI G+ HG +E I
Sbjct: 487 LCIGIDHEAMVHSALISMYSKCGSVEEASKIFNGMKINNIISWTAMINGYAEHGYSQEAI 546
Query: 306 KLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYW 365
LF ++ + PD +TFIGV+ AC A ++ G YF M + Y+I P+ HY
Sbjct: 547 NLFE-----KISSVGLKPDYVTFIGVLTACSHAGMVDLGFYYFMLMTNEYQISPSKEHYG 601
Query: 366 CMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFV 425
C+ +L A EAE ++R MP D+ ++W +LL CR G V A+ +
Sbjct: 602 CIIDLLCRAGRLSEAEHMIRSMPCYTDD-----VVWSTLLRSCRVHGDVDRGRWTAEQLL 656
Query: 426 DMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLKEVVEKLKVG 484
+DP + L N+YA G+W++ A +R+LMK + + + G V++ + + G
Sbjct: 657 RLDPNSAGTHIALANIYAAKGRWKEAAHIRKLMKSKGVIKERGWSWVNVNDKLNAFVAG 715
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 79/380 (20%), Positives = 154/380 (40%), Gaps = 38/380 (10%)
Query: 12 ITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSNSCVPDQG 71
+ SGL N+ F + L+ G + VFK + A+I ++ +
Sbjct: 184 VKSGLI-NSVFVSSALIDMYMKVGKIEQGCRVFKKMTKRNVVSWTAIIAGLVHAGYNMEA 242
Query: 72 VVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINM 131
++++ +M + +S+TF + A + + G H +K G D V+N+L M
Sbjct: 243 LLYFSEMWISKVGYDSHTFAIALKASADSSLLHHGKAIHTQTIKQGFDESSFVINTLATM 302
Query: 132 YGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMI 191
Y G D +F +M D++SW ++++ +V+ G+ A
Sbjct: 303 YNKCGKADYVMRLFEKMKMPDVVSWTTLITTYVQKGEEEHA------------------- 343
Query: 192 SGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLK 251
++ F+ M KS N T A+V++AC A G +HG+ +R L
Sbjct: 344 ------------VEAFKRMRKSNVSPNKYTFAAVISACANLAIAKWGEQIHGHVLRLGLV 391
Query: 252 PNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTAL 311
+ + +++ LYSK ++ A VF + ++++ W+ +I + G +E + +
Sbjct: 392 DALSVANSIVTLYSKSGLLKSASLVFHGITRKDIISWSTIIAVYSQGGYAKEAFDYLSWM 451
Query: 312 VNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLY 371
P+E V+ C LL +G++ ++ H + ++Y
Sbjct: 452 RR-----EGPKPNEFALSSVLSVCGSMALLEQGKQVHAHVLCIGIDHEAMVHS-ALISMY 505
Query: 372 AGAELTEEAEEILRKMPEDN 391
+ EEA +I M +N
Sbjct: 506 SKCGSVEEASKIFNGMKINN 525
Score = 95.5 bits (236), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 60/205 (29%), Positives = 100/205 (48%), Gaps = 6/205 (2%)
Query: 149 SPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFR 208
S +++ NS + V+ G + + +FD M R+ +SW +I+GY + + +L LF
Sbjct: 86 SVHNMLELNSELKQLVKQGQLCKSRYMFDKMTHRDEISWTTLIAGYVNASDSYEALILFS 145
Query: 209 EM-MKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKC 267
M ++ G + + ++ L ACG G +HG++V++ L ++ + +ALID+Y K
Sbjct: 146 NMWVQPGLQRDQFMISVALKACGLGVNICFGELLHGFSVKSGLINSVFVSSALIDMYMKV 205
Query: 268 QKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEIT 327
K+E RVF M RN+V W A+I G G E + F+ + V D T
Sbjct: 206 GKIEQGCRVFKKMTKRNVVSWTAIIAGLVHAGYNMEALLYFSEMWISKVG-----YDSHT 260
Query: 328 FIGVICACVRAELLTEGRKYFRQMI 352
F + A + LL G+ Q I
Sbjct: 261 FAIALKASADSSLLHHGKAIHTQTI 285
Score = 92.0 bits (227), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 65/292 (22%), Positives = 122/292 (41%), Gaps = 37/292 (12%)
Query: 56 NAVIKAYSNSCVPDQGVVFYLQM-IKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLAL 114
+I Y N+ + ++ + M ++ G + + +C + G + HG ++
Sbjct: 125 TTLIAGYVNASDSYEALILFSNMWVQPGLQRDQFMISVALKACGLGVNICFGELLHGFSV 184
Query: 115 KNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHE 174
K+G+ + V ++LI+MY ++ G +
Sbjct: 185 KSGLINSVFVSSALIDMY-------------------------------MKVGKIEQGCR 213
Query: 175 LFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSAR 234
+F M +RNVVSW +I+G +G +L F EM S + T A L A S+
Sbjct: 214 VFKKMTKRNVVSWTAIIAGLVHAGYNMEALLYFSEMWISKVGYDSHTFAIALKASADSSL 273
Query: 235 FNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILG 294
+ G+++H T++ + + L +Y+KC K + R+F+ M ++V W +I
Sbjct: 274 LHHGKAIHTQTIKQGFDESSFVINTLATMYNKCGKADYVMRLFEKMKMPDVVSWTTLITT 333
Query: 295 HCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRK 346
+ G+ E ++ F + V SP++ TF VI AC + G +
Sbjct: 334 YVQKGEEEHAVEAFKRMRKSNV-----SPNKYTFAAVISACANLAIAKWGEQ 380
>gi|310656753|gb|ADP02188.1| PPR domain-containing protein [Triticum aestivum]
Length = 788
Score = 225 bits (573), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 136/406 (33%), Positives = 210/406 (51%), Gaps = 11/406 (2%)
Query: 70 QGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLI 129
+ V Y QM+ +G PN F S+ +CA + G H +LK G + V SLI
Sbjct: 362 EAVKLYSQMLADGCRPNISCFSSVLSACASLEDLRGGARIHARSLKMGSSTNVFVSCSLI 421
Query: 130 NMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNI 189
+MY A+ +F + ++++ WNS+VSG+ +G M A LF MP RN+ SWN
Sbjct: 422 DMYCKCNKCGDAQTIFDTLPQKNIVCWNSLVSGYSYNGKMVEAMYLFKKMPARNLASWNT 481
Query: 190 MISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTS 249
+ISGY+++ +LK F M+ SG + T +SVL AC G+ H T++
Sbjct: 482 IISGYAQNRQFVDALKSFNAMLASGQVPGEITFSSVLLACANLCSLVTGKMAHAKTIKLG 541
Query: 250 LKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFT 309
++ +I + TAL D+Y+K ++ ++R+F M +RN V W AMI G +G EE I LF
Sbjct: 542 IEESIFIGTALSDMYAKSGDLQSSKRMFYQMPERNDVTWTAMIQGLAENGFAEESILLFE 601
Query: 310 ALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMAN 369
++ ++P+E TF+ ++ AC L+ + YF +M I P HY CM +
Sbjct: 602 DMM-----ATGMTPNEHTFLALLFACSHGGLVEQAIHYFDKM-QALGISPKEKHYTCMVD 655
Query: 370 LYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDP 429
+ A A EAE +L K P ++ S W +LLS C + ER AK ++
Sbjct: 656 VLARAGRLAEAEALLMKTPSKSEANS-----WAALLSACNTYRNEEIAERAAKRLHELAK 710
Query: 430 QDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLK 475
+ + Y L N+YA G+W+D AR+R LMK + + GC V ++
Sbjct: 711 DNTAGYVLLSNMYASCGRWKDAARIRVLMKGTTLKKDGGCSWVQVR 756
Score = 169 bits (428), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 103/378 (27%), Positives = 179/378 (47%), Gaps = 36/378 (9%)
Query: 56 NAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALK 115
A I + + + + + +M+ PN T V + +C G GLA+K
Sbjct: 215 TATISGFVRNELHHNALGVFRKMLSCRVRPNGITIVCMIKACVGAGEFGLALSIVGLAIK 274
Query: 116 -NGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHE 174
N + + V NSLI +Y G AR +F +M +D++SW +++ + SGD+ A
Sbjct: 275 SNFFESSIEVQNSLITLYLRMGDAAAARKVFDEMDVKDVVSWTALLDVYSESGDLDGARR 334
Query: 175 LFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSAR 234
+ D MPERN VSW +I+ + + GN ++KL+ +M+ G R N +SVL+AC
Sbjct: 335 VLDAMPERNEVSWGTLIARHEQRGNAAEAVKLYSQMLADGCRPNISCFSSVLSACASLED 394
Query: 235 FNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILG 294
G +H +++ N+ + +LID+Y KC K AQ +FD++ +N+VCWN+++ G
Sbjct: 395 LRGGARIHARSLKMGSSTNVFVSCSLIDMYCKCNKCGDAQTIFDTLPQKNIVCWNSLVSG 454
Query: 295 HCIHGKPEEGIKLFTAL---------------------------VNGTVAGGSISPDEIT 327
+ +GK E + LF + N +A G + P EIT
Sbjct: 455 YSYNGKMVEAMYLFKKMPARNLASWNTIISGYAQNRQFVDALKSFNAMLASGQV-PGEIT 513
Query: 328 FIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKM 387
F V+ AC L G+ + I I+ + ++++YA + + ++ + +M
Sbjct: 514 FSSVLLACANLCSLVTGKMAHAKTIKL-GIEESIFIGTALSDMYAKSGDLQSSKRMFYQM 572
Query: 388 PEDNDNMSFESIMWVSLL 405
PE ND + W +++
Sbjct: 573 PERND------VTWTAMI 584
Score = 95.9 bits (237), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 97/425 (22%), Positives = 171/425 (40%), Gaps = 83/425 (19%)
Query: 110 HGLALKNGVDFELPVMNSLINMYGCFG---AMDCARNMFVQMSPRDLISWNSIVSGHVRS 166
H A+++GV + V + L+ Y F D A V +++ +VS HV++
Sbjct: 103 HAHAVRSGVAADRSVASHLLTTYAAFARAAERDRAFGDCVAADAASPFAYDFMVSEHVKA 162
Query: 167 GDMSAAHELFDIMPERNVVSWNIMISGYSKSGN-----------PGCS------------ 203
GD+++A LFD MP+R VVS+ M+ K G P S
Sbjct: 163 GDIASARRLFDGMPDRTVVSYTTMVDALMKRGRVAEAVELYEQCPSGSVAFFTATISGFV 222
Query: 204 --------LKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSL----- 250
L +FR+M+ R N T+ ++ AC + F S+ G ++++
Sbjct: 223 RNELHHNALGVFRKMLSCRVRPNGITIVCMIKACVGAGEFGLALSIVGLAIKSNFFESSI 282
Query: 251 ---------------------------KPNIILDTALIDLYSKCQKVEVAQRVFDSMADR 283
+++ TAL+D+YS+ ++ A+RV D+M +R
Sbjct: 283 EVQNSLITLYLRMGDAAAARKVFDEMDVKDVVSWTALLDVYSESGDLDGARRVLDAMPER 342
Query: 284 NLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTE 343
N V W +I H G E +KL++ ++ P+ F V+ AC E L
Sbjct: 343 NEVSWGTLIARHEQRGNAAEAVKLYSQML-----ADGCRPNISCFSSVLSACASLEDLRG 397
Query: 344 GRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVS 403
G + + + F + ++Y +A+ I +P+ N + W S
Sbjct: 398 GARIHARSLKMGSSTNVFVS-CSLIDMYCKCNKCGDAQTIFDTLPQKN------IVCWNS 450
Query: 404 LLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRM 463
L+S + G MVE + F M ++ + + +++ YA Q+ D + M
Sbjct: 451 LVSGYSYNG--KMVEAM-YLFKKMPARNLASWNTIISGYAQNRQFVDALKSFNAMLAS-- 505
Query: 464 GRMPG 468
G++PG
Sbjct: 506 GQVPG 510
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 68/261 (26%), Positives = 110/261 (42%), Gaps = 19/261 (7%)
Query: 203 SLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALID 262
+L L ++SG + + +LT AR E G V D ++
Sbjct: 99 ALSLHAHAVRSGVAADRSVASHLLTTYAAFARAAERDRAFGDCVAADAASPFAYDF-MVS 157
Query: 263 LYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSIS 322
+ K + A+R+FD M DR +V + M+ G+ E ++L+ +G+VA
Sbjct: 158 EHVKAGDIASARRLFDGMPDRTVVSYTTMVDALMKRGRVAEAVELYEQCPSGSVA----- 212
Query: 323 PDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEE 382
F I VR EL FR+M+ +++PN CM GA A
Sbjct: 213 ----FFTATISGFVRNELHHNALGVFRKMLSC-RVRPNGITIVCMIKACVGAGEFGLALS 267
Query: 383 ILRKMPEDNDNMSFESIMWV--SLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLN 440
I+ + N FES + V SL++L G A ++ F +MD +D + LL+
Sbjct: 268 IVGLAIKSN---FFESSIEVQNSLITLYLRMGDAAAARKV---FDEMDVKDVVSWTALLD 321
Query: 441 VYAVAGQWEDVARVRELMKKR 461
VY+ +G + RV + M +R
Sbjct: 322 VYSESGDLDGARRVLDAMPER 342
>gi|449530632|ref|XP_004172298.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g08820-like [Cucumis sativus]
Length = 688
Score = 225 bits (573), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 147/553 (26%), Positives = 245/553 (44%), Gaps = 83/553 (15%)
Query: 3 QLLQIQAHLITSGLFFNNSFWTINLLKHSA-DFGSPDYTVLVFKCINNPGTFCVNAVIKA 61
QL I A L+ L + + +NL+ A DFGS +Y+ LVF + P F N +I+
Sbjct: 31 QLKHIHARLLR--LHLDQDNYLLNLILCCALDFGSTNYSKLVFSQVKEPNIFLWNTMIRG 88
Query: 62 YSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFE 121
+ D + Y M GF+PN++T + +CA+ V G H L +K G D +
Sbjct: 89 LVSKDCFDDAIHLYGSMRGGGFLPNNFTIPFVLKACARKLDVRLGLKIHSLLVKAGYDHD 148
Query: 122 LPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPE 181
+ V SL+++Y D A +F + ++++SW +I++G++ SG A F + E
Sbjct: 149 VFVKTSLLSLYVKCDNFDDALKVFDDIPDKNVVSWTAIITGYISSGHFREAIGAFKKLLE 208
Query: 182 ---------------------------------------RNVVSWNIMISGYSKSGN--- 199
RNV ++ Y K GN
Sbjct: 209 MGLKPDSFSLVKVLAACARLGDCTSGEWIDRYISDSGMGRNVFVATSLLDMYVKCGNLER 268
Query: 200 ----------------------------PGCSLKLFREMMKSGFRGNDKTMASVLTACGR 231
P +L LF +M + + TM VL+AC
Sbjct: 269 ANLIFSAMPEKDIVSWSTMIQGYAFNGLPQQALDLFFQMQSENLKPDCYTMVGVLSACAT 328
Query: 232 SARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAM 291
+ G R N +L TALID+YSKC V A +F +M ++ V WNAM
Sbjct: 329 LGALDLGIWASSLMDRNEFLSNPVLGTALIDMYSKCGSVTQAWEIFTAMKKKDRVVWNAM 388
Query: 292 ILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQM 351
++G ++G + LF+ V I PDE TFIG++C C + EGR++F M
Sbjct: 389 MVGLSMNGHAKAVFSLFS-----LVEKHGIRPDENTFIGLLCGCTHGGFVNEGRQFFNNM 443
Query: 352 IDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQ 411
+ + P+ HY CM +L A L EA +++ MP M +++W +LL C+
Sbjct: 444 KRVFSLTPSIEHYGCMVDLLGRAGLLNEAHQLINNMP-----MKPNAVVWGALLGGCKLH 498
Query: 412 GAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRL 471
+ E++ K ++++P + Y L N+Y+ +WE+ ++R MK++++ ++ C
Sbjct: 499 KDTHLAEQVLKKLIELEPWNSGNYVQLSNIYSGNHRWEEAEKIRSTMKEQQIQKIRACSW 558
Query: 472 VDLKEVVEKLKVG 484
+++ +V + VG
Sbjct: 559 IEIDGIVHEFLVG 571
>gi|326522488|dbj|BAK07706.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 799
Score = 225 bits (573), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 136/407 (33%), Positives = 213/407 (52%), Gaps = 13/407 (3%)
Query: 70 QGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLI 129
+ V Y QM+ +G PN F S+ +CA + G H +LK G + V +SLI
Sbjct: 365 EAVKLYSQMLADGCRPNISCFSSVLSACATLEDLRGGARIHARSLKMGSSTNVFVSSSLI 424
Query: 130 NMY-GCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWN 188
+MY C D A+ +F + ++++ WNS+ SG+ +G M A LF MP RN+ SWN
Sbjct: 425 DMYCKCKKCRD-AQTIFDTLPEKNIVCWNSLASGYSYNGKMVEAMYLFKKMPARNLASWN 483
Query: 189 IMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRT 248
+ISGY+++ +L+ F M+ SG + T +SVL AC G+ H T++
Sbjct: 484 TIISGYAQNRQFVDALRSFNAMLASGQVPGEITFSSVLLACANLCSLVTGKMAHAKTIKL 543
Query: 249 SLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLF 308
++ +I + TAL D+Y+K ++ ++R+F M +RN V W AMI G +G EE I LF
Sbjct: 544 GMEESIFIGTALSDMYAKSGDLQSSKRMFYQMPERNDVTWTAMIQGLAENGLAEESILLF 603
Query: 309 TALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMA 368
++ ++P+E TF+ ++ AC L+ + YF +M + I P HY CM
Sbjct: 604 EDMM-----ATGMTPNEHTFLALLFACSHGGLVEQAIHYFEKM-QAWGISPKEKHYTCMV 657
Query: 369 NLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMD 428
++ A A EAE +L K P ++ S W +LLS C + ER AK ++
Sbjct: 658 DVLARAGRLIEAEALLMKTPSKSEANS-----WAALLSACNTYKNEEIGERAAKRLHELG 712
Query: 429 PQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLK 475
+ + Y L N+YA G+W+D AR+R LMK + + GC V ++
Sbjct: 713 KDNTAGYVLLSNMYASCGRWKDAARIRVLMKGTTLKKDGGCSWVQVR 759
Score = 174 bits (441), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 104/378 (27%), Positives = 181/378 (47%), Gaps = 36/378 (9%)
Query: 56 NAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALK 115
A I + + + + + +M+ G PN TFV + +C G G A+K
Sbjct: 218 TATISGFVRNELHHNALGVFRKMVSCGVRPNGITFVCMIKACVGAGEFGLAMSIVGSAIK 277
Query: 116 -NGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHE 174
N + + V NSLI +Y G AR +F +M +D++SW +++ + SGD+ A
Sbjct: 278 SNFFESSIEVQNSLITLYLRMGDAAAARKVFDEMDVKDVVSWTALLDVYSESGDLDGARR 337
Query: 175 LFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSAR 234
+ D MPERN VSW +I+ + + GN ++KL+ +M+ G R N +SVL+AC
Sbjct: 338 VLDAMPERNEVSWGTLIARHEQRGNAAEAVKLYSQMLADGCRPNISCFSSVLSACATLED 397
Query: 235 FNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILG 294
G +H +++ N+ + ++LID+Y KC+K AQ +FD++ ++N+VCWN++ G
Sbjct: 398 LRGGARIHARSLKMGSSTNVFVSSSLIDMYCKCKKCRDAQTIFDTLPEKNIVCWNSLASG 457
Query: 295 HCIHGKPEEGIKLFTAL---------------------------VNGTVAGGSISPDEIT 327
+ +GK E + LF + N +A G + P EIT
Sbjct: 458 YSYNGKMVEAMYLFKKMPARNLASWNTIISGYAQNRQFVDALRSFNAMLASGQV-PGEIT 516
Query: 328 FIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKM 387
F V+ AC L G+ + I + F ++++YA + + ++ + +M
Sbjct: 517 FSSVLLACANLCSLVTGKMAHAKTIKLGMEESIFIGT-ALSDMYAKSGDLQSSKRMFYQM 575
Query: 388 PEDNDNMSFESIMWVSLL 405
PE ND + W +++
Sbjct: 576 PERND------VTWTAMI 587
Score = 104 bits (259), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 101/425 (23%), Positives = 173/425 (40%), Gaps = 83/425 (19%)
Query: 110 HGLALKNGVDFELPVMNSLINMYGCFG-AMDCARNM--FVQMSPRDLISWNSIVSGHVRS 166
H A+++GV + V + L+ Y F A +C R V +++ +V HV++
Sbjct: 106 HAHAVRSGVAADTSVASHLLTTYAAFARAAECDRAFGDCVAAGAASPFTYDFMVHEHVKA 165
Query: 167 GDMSAAHELFDIMPERNVVSWNIMISGYSKSGN-----------PGCS------------ 203
GD+++A LFD MPER+VVS+ M+ K G P S
Sbjct: 166 GDIASARGLFDGMPERSVVSYTTMVDALMKRGRVAEAVELYEQCPSGSVAFFTATISGFV 225
Query: 204 --------LKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSL----- 250
L +FR+M+ G R N T ++ AC + F S+ G ++++
Sbjct: 226 RNELHHNALGVFRKMVSCGVRPNGITFVCMIKACVGAGEFGLAMSIVGSAIKSNFFESSI 285
Query: 251 ---------------------------KPNIILDTALIDLYSKCQKVEVAQRVFDSMADR 283
+++ TAL+D+YS+ ++ A+RV D+M +R
Sbjct: 286 EVQNSLITLYLRMGDAAAARKVFDEMDVKDVVSWTALLDVYSESGDLDGARRVLDAMPER 345
Query: 284 NLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTE 343
N V W +I H G E +KL++ ++ P+ F V+ AC E L
Sbjct: 346 NEVSWGTLIARHEQRGNAAEAVKLYSQML-----ADGCRPNISCFSSVLSACATLEDLRG 400
Query: 344 GRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVS 403
G + + + F + ++Y + +A+ I +PE N + W S
Sbjct: 401 GARIHARSLKMGSSTNVFVSS-SLIDMYCKCKKCRDAQTIFDTLPEKN------IVCWNS 453
Query: 404 LLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRM 463
L S + G MVE + F M ++ + + +++ YA Q+ D R M
Sbjct: 454 LASGYSYNG--KMVEAM-YLFKKMPARNLASWNTIISGYAQNRQFVDALRSFNAMLAS-- 508
Query: 464 GRMPG 468
G++PG
Sbjct: 509 GQVPG 513
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 66/261 (25%), Positives = 110/261 (42%), Gaps = 19/261 (7%)
Query: 203 SLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALID 262
+L L ++SG + + +LT AR E G V D ++
Sbjct: 102 ALSLHAHAVRSGVAADTSVASHLLTTYAAFARAAECDRAFGDCVAAGAASPFTYDF-MVH 160
Query: 263 LYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSIS 322
+ K + A+ +FD M +R++V + M+ G+ E ++L+ +G+VA
Sbjct: 161 EHVKAGDIASARGLFDGMPERSVVSYTTMVDALMKRGRVAEAVELYEQCPSGSVA----- 215
Query: 323 PDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEE 382
F I VR EL FR+M+ ++PN + CM GA A
Sbjct: 216 ----FFTATISGFVRNELHHNALGVFRKMVSC-GVRPNGITFVCMIKACVGAGEFGLAMS 270
Query: 383 ILRKMPEDNDNMSFESIMWV--SLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLN 440
I+ + N FES + V SL++L G A ++ F +MD +D + LL+
Sbjct: 271 IVGSAIKSN---FFESSIEVQNSLITLYLRMGDAAAARKV---FDEMDVKDVVSWTALLD 324
Query: 441 VYAVAGQWEDVARVRELMKKR 461
VY+ +G + RV + M +R
Sbjct: 325 VYSESGDLDGARRVLDAMPER 345
>gi|297740786|emb|CBI30968.3| unnamed protein product [Vitis vinifera]
Length = 1434
Score = 225 bits (573), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 127/387 (32%), Positives = 200/387 (51%), Gaps = 41/387 (10%)
Query: 98 AKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWN 157
AK V G H +A++NG + + V N+L++MY
Sbjct: 6 AKLMDVREGEKVHSIAIRNGFESLVFVQNTLVHMYA------------------------ 41
Query: 158 SIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRG 217
GH S AH+LF++M ERN+V+WN +I+GY+ +G P +L LFREM G
Sbjct: 42 --ACGHAES-----AHKLFELMAERNLVTWNSVINGYALNGRPNEALTLFREMGLRGVEP 94
Query: 218 NDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVF 277
+ TM S+L+AC GR H Y V+ L N+ AL+DLY+KC + A +VF
Sbjct: 95 DGFTMVSLLSACAELGALALGRRAHVYMVKVGLDGNLHAGNALLDLYAKCGSIRQAHKVF 154
Query: 278 DSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVR 337
D M ++++V W ++I+G ++G +E ++LF L + P EITF+GV+ AC
Sbjct: 155 DEMEEKSVVSWTSLIVGLAVNGFGKEALELFKELER-----KGLMPSEITFVGVLYACSH 209
Query: 338 AELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFE 397
++ EG YF++M + Y I P HY CM +L A L ++A E ++ MP M
Sbjct: 210 CGMVDEGFDYFKRMKEEYGIVPKIEHYGCMVDLLGRAGLVKQAHEFIQNMP-----MQPN 264
Query: 398 SIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVREL 457
+++W +LL C G +A+ E + ++P+ Y L N+YA +W DV +VR
Sbjct: 265 AVVWRTLLGACTIHGHLALGEVARAQLLQLEPKHSGDYVLLSNLYASEQRWSDVHKVRRT 324
Query: 458 MKKRRMGRMPGCRLVDLKEVVEKLKVG 484
M + + + PG LV+L+ + + +G
Sbjct: 325 MLREGVKKTPGHSLVELRNRLHEFVMG 351
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 61/250 (24%), Positives = 109/250 (43%), Gaps = 41/250 (16%)
Query: 56 NAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALK 115
N+VI Y+ + P++ + + +M G P+ +T VSL +CA+ G + G H +K
Sbjct: 65 NSVINGYALNGRPNEALTLFREMGLRGVEPDGFTMVSLLSACAELGALALGRRAHVYMVK 124
Query: 116 NGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHEL 175
G+D L N+L+++Y G++ A +F +M + ++SW S++ G
Sbjct: 125 VGLDGNLHAGNALLDLYAKCGSIRQAHKVFDEMEEKSVVSWTSLIVG------------- 171
Query: 176 FDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARF 235
+ ++G+ K +L+LF+E+ + G ++ T VL AC
Sbjct: 172 -------------LAVNGFGKE-----ALELFKELERKGLMPSEITFVGVLYACSHCGMV 213
Query: 236 NEG-----RSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMA-DRNLVCWN 289
+EG R Y + P I ++DL + V+ A +M N V W
Sbjct: 214 DEGFDYFKRMKEEYGI----VPKIEHYGCMVDLLGRAGLVKQAHEFIQNMPMQPNAVVWR 269
Query: 290 AMILGHCIHG 299
++ IHG
Sbjct: 270 TLLGACTIHG 279
>gi|359488823|ref|XP_002273685.2| PREDICTED: uncharacterized protein LOC100245824 [Vitis vinifera]
Length = 1984
Score = 224 bits (572), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 131/423 (30%), Positives = 228/423 (53%), Gaps = 9/423 (2%)
Query: 56 NAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALK 115
+A+I YS S ++ + + +M++ GF PN F + A + G HG K
Sbjct: 285 SAMIARYSQSGYAEEALKLFSKMVQEGFKPNISCFACTLSALASLRALSAGINIHGHVTK 344
Query: 116 NGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHEL 175
G+D ++ + +SLI++Y G D R +F + ++++ WNS+V G+ +G + EL
Sbjct: 345 IGIDKDVFIGSSLIDLYCKCGKPDDGRLVFDLILEKNVVCWNSMVGGYSINGRLEETEEL 404
Query: 176 FDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARF 235
F+++PE+N VSW +I+GY ++ L++F ++ SG N T +SVL AC A
Sbjct: 405 FELIPEKNDVSWGTIIAGYLENEQCEKVLEVFNTLLVSGQTPNKSTFSSVLCACASIASL 464
Query: 236 NEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGH 295
++G +VHG ++ ++ +I + TAL D+Y+KC + +++VF+ M ++N + W MI G
Sbjct: 465 DKGMNVHGKIIKLGIQYDIFVGTALTDMYAKCGDIGSSKQVFERMPEKNEISWTVMIQGL 524
Query: 296 CIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFY 355
G E + LF + + ++P+E+ + V+ AC L+ +G YF M Y
Sbjct: 525 AESGFAVESLILFEEMERTS----EVAPNELMLLSVLFACSHCGLVDKGLWYFNSMEKVY 580
Query: 356 KIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVA 415
IKP HY C+ +L + + EAEE +R +P E+ W +LLS C+
Sbjct: 581 GIKPKGKHYTCVVDLLSRSGRLYEAEEFIRTIP-----FQPEANAWAALLSGCKKYKDEK 635
Query: 416 MVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLK 475
+ ER AK + + + Y L N+YA AG+W DV+ +R+LM+++ + + GC V+++
Sbjct: 636 IAERTAKKLWQLAENNSAGYVLLSNIYASAGRWIDVSNIRKLMREKGLKKSGGCSWVEVR 695
Query: 476 EVV 478
V
Sbjct: 696 NQV 698
Score = 189 bits (479), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 106/363 (29%), Positives = 189/363 (52%), Gaps = 27/363 (7%)
Query: 56 NAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALK 115
A I + + + + + + +++++G PN TF S+ +C + G G GL +K
Sbjct: 153 TAAISGFVRNGLNFEALKLFFRLLESGVRPNDVTFTSVVRACGELGDFGLGMSILGLVVK 212
Query: 116 NGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHEL 175
G + L V NSLI + G +D AR +F +M RD++SW +I+ +V +GD+ A +
Sbjct: 213 AGFEHYLSVSNSLITLSLRMGEIDLARRVFDRMEKRDVVSWTAILDAYVETGDLREARRI 272
Query: 176 FDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARF 235
FD MPERN +SW+ MI+ YS+SG +LKLF +M++ GF+ N A L+A
Sbjct: 273 FDEMPERNEISWSAMIARYSQSGYAEEALKLFSKMVQEGFKPNISCFACTLSALASLRAL 332
Query: 236 NEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGH 295
+ G ++HG+ + + ++ + ++LIDLY KC K + + VFD + ++N+VCWN+M+ G+
Sbjct: 333 SAGINIHGHVTKIGIDKDVFIGSSLIDLYCKCGKPDDGRLVFDLILEKNVVCWNSMVGGY 392
Query: 296 CIHGK-----------PEEGIKLFTALVNG---------------TVAGGSISPDEITFI 329
I+G+ PE+ + ++ G T+ +P++ TF
Sbjct: 393 SINGRLEETEELFELIPEKNDVSWGTIIAGYLENEQCEKVLEVFNTLLVSGQTPNKSTFS 452
Query: 330 GVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPE 389
V+CAC L +G ++I I+ + + ++YA ++++ +MPE
Sbjct: 453 SVLCACASIASLDKGMNVHGKIIKL-GIQYDIFVGTALTDMYAKCGDIGSSKQVFERMPE 511
Query: 390 DND 392
N+
Sbjct: 512 KNE 514
Score = 135 bits (341), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 92/322 (28%), Positives = 164/322 (50%), Gaps = 21/322 (6%)
Query: 54 CVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSL---FGSCAKTGCVERGGMCH 110
CV +++K +SN + QG V + +IK GF Y + L + +C K +++
Sbjct: 24 CV-SLLKKFSNQGLITQGNVLHAHLIKTGFSSQRYIAIKLLILYLNCRKFAEIDQ----- 77
Query: 111 GLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMS 170
+K +L V N +I+ Y +G + AR +F +M R+ +SW++++SG ++ G +
Sbjct: 78 --IVKEFDGSDLVVSNCMISAYVQWGNLVQARLLFDEMPERNEVSWSALISGLMKYGRVE 135
Query: 171 AAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACG 230
+ F+ P +NVVSW ISG+ ++G +LKLF +++SG R ND T SV+ ACG
Sbjct: 136 ESMWYFERNPFQNVVSWTAAISGFVRNGLNFEALKLFFRLLESGVRPNDVTFTSVVRACG 195
Query: 231 RSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNA 290
F G S+ G V+ + + + +LI L + ++++A+RVFD M R++V W A
Sbjct: 196 ELGDFGLGMSILGLVVKAGFEHYLSVSNSLITLSLRMGEIDLARRVFDRMEKRDVVSWTA 255
Query: 291 MILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQ 350
++ + G E ++F + +EI++ +I ++ E K F +
Sbjct: 256 ILDAYVETGDLREARRIFDEMPER---------NEISWSAMIARYSQSGYAEEALKLFSK 306
Query: 351 MIDFYKIKPNFAHYWCMANLYA 372
M+ KPN + + C + A
Sbjct: 307 MVQ-EGFKPNISCFACTLSALA 327
Score = 65.9 bits (159), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 69/300 (23%), Positives = 117/300 (39%), Gaps = 77/300 (25%)
Query: 35 GSPDYTVLVFKCINNPGTFCVNAVIKAYS-----------NSCVPDQG-------VVFYL 76
G PD LVF I C N+++ YS +P++ + YL
Sbjct: 365 GKPDDGRLVFDLILEKNVVCWNSMVGGYSINGRLEETEELFELIPEKNDVSWGTIIAGYL 424
Query: 77 Q-------------MIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELP 123
+ ++ +G PN TF S+ +CA +++G HG +K G+ +++
Sbjct: 425 ENEQCEKVLEVFNTLLVSGQTPNKSTFSSVLCACASIASLDKGMNVHGKIIKLGIQYDIF 484
Query: 124 VMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERN 183
V +L +MY G + ++ +F +M ++ ISW
Sbjct: 485 VGTALTDMYAKCGDIGSSKQVFERMPEKNEISW--------------------------- 517
Query: 184 VVSWNIMISGYSKSGNPGCSLKLFREMMK-SGFRGNDKTMASVLTACGRSA-------RF 235
+MI G ++SG SL LF EM + S N+ + SVL AC F
Sbjct: 518 ----TVMIQGLAESGFAVESLILFEEMERTSEVAPNELMLLSVLFACSHCGLVDKGLWYF 573
Query: 236 NEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMA-DRNLVCWNAMILG 294
N V+G +KP T ++DL S+ ++ A+ ++ W A++ G
Sbjct: 574 NSMEKVYG------IKPKGKHYTCVVDLLSRSGRLYEAEEFIRTIPFQPEANAWAALLSG 627
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 67/316 (21%), Positives = 110/316 (34%), Gaps = 102/316 (32%)
Query: 207 FREMM----KSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALID 262
FR ++ K FR +T S+L +G +H + ++T + L+
Sbjct: 5 FRTLLAIDPKKSFRAYAQTCVSLLKKFSNQGLITQGNVLHAHLIKTGFSSQRYIAIKLLI 64
Query: 263 LYSKCQK-VEVAQRV------------------------------FDSMADRNLVCWNAM 291
LY C+K E+ Q V FD M +RN V W+A+
Sbjct: 65 LYLNCRKFAEIDQIVKEFDGSDLVVSNCMISAYVQWGNLVQARLLFDEMPERNEVSWSAL 124
Query: 292 ILGHCIHGKPEEGIKLF-----------TALVNGTVAGG---------------SISPDE 325
I G +G+ EE + F TA ++G V G + P++
Sbjct: 125 ISGLMKYGRVEESMWYFERNPFQNVVSWTAAISGFVRNGLNFEALKLFFRLLESGVRPND 184
Query: 326 ITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILR 385
+TF V+ AC EL G I +K F HY ++N
Sbjct: 185 VTFTSVVRAC--GEL---GDFGLGMSILGLVVKAGFEHYLSVSN---------------- 223
Query: 386 KMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVA 445
SL++L G + + R+ F M+ +D + +L+ Y
Sbjct: 224 -----------------SLITLSLRMGEIDLARRV---FDRMEKRDVVSWTAILDAYVET 263
Query: 446 GQWEDVARVRELMKKR 461
G + R+ + M +R
Sbjct: 264 GDLREARRIFDEMPER 279
>gi|297831842|ref|XP_002883803.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297329643|gb|EFH60062.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 697
Score = 224 bits (572), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 132/439 (30%), Positives = 223/439 (50%), Gaps = 17/439 (3%)
Query: 43 VFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGC 102
VF + + N++I Y + + + + M+++ P+ T S+ +CA
Sbjct: 209 VFDEMGDRNVVSWNSLITCYEQNGPAVEALKVFQVMLESWVEPDEVTLASVISACASLSA 268
Query: 103 VERGGMCHGLALK-NGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVS 161
++ G H +K + + ++ + N+ ++MY + AR +F M R++I+ S+VS
Sbjct: 269 IKVGQEVHARVVKMDKLRNDIILSNAFVDMYAKCSRIKEARFIFDSMPIRNVIAETSMVS 328
Query: 162 GHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKT 221
G+ + AA +F M ERNVVSWN +I+GY+++G +L LF + + T
Sbjct: 329 GYAMAASTKAARLMFTKMAERNVVSWNALIAGYTQNGENEEALSLFCLLKRESVCPTHYT 388
Query: 222 MASVLTACGRSARFNEGRSV------HGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQR 275
A++L AC A + G HG+ ++ + +I + +LID+Y KC VE
Sbjct: 389 FANILKACADLADLHLGMQAHVHVLKHGFKFQSGEEDDIFVGNSLIDMYVKCGCVEEGYL 448
Query: 276 VFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICAC 335
VF M +R+ V WNAMI+G +G E ++LF +++ PD IT IGV+ AC
Sbjct: 449 VFRKMMERDCVSWNAMIIGFAQNGYGNEALELFREMLD-----SGEKPDHITMIGVLSAC 503
Query: 336 VRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMS 395
A + EGR YF M + + P HY CM +L A EEA+ I+ +MP D
Sbjct: 504 GHAGFVEEGRHYFSSMTRDFGVAPLRDHYTCMVDLLGRAGFLEEAKSIIEEMPVQPD--- 560
Query: 396 FESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVR 455
S++W SLL+ C+ + + + +A+ +++ + Y L N+YA G+W D VR
Sbjct: 561 --SVIWGSLLAACKVHRNITLGKYVAEKLFEVETSNSGPYVLLSNMYAELGKWGDAMNVR 618
Query: 456 ELMKKRRMGRMPGCRLVDL 474
+LM+K + + PGC + +
Sbjct: 619 KLMRKEGVTKQPGCSWIKI 637
Score = 172 bits (435), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 98/306 (32%), Positives = 156/306 (50%), Gaps = 6/306 (1%)
Query: 87 SYTFVSLFGSCAKTGCVERGGMC-HGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMF 145
S F L SC K C H +K+G E+ + N LI+ Y G+++ R +F
Sbjct: 19 SSPFAKLLDSCIKLKLSAIDVRCVHASVIKSGFSNEVFIQNRLIDAYAKCGSLEDGRQLF 78
Query: 146 VQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLK 205
+M R++ +WNS+V+G + G + A LF MPER+ +WN M+SG+++ +L
Sbjct: 79 DKMPQRNVFTWNSVVTGLTKLGFLDEADSLFRSMPERDQCTWNSMVSGFAQHDRCEEALY 138
Query: 206 LFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYS 265
F M K GF N+ T AS L+AC N G +H ++ ++ + +AL+D+YS
Sbjct: 139 YFAMMHKEGFVLNEYTFASGLSACSGLNDMNRGVQIHSLIAKSPCLSDVYIGSALVDMYS 198
Query: 266 KCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDE 325
KC V AQ+VFD M DRN+V WN++I + +G E +K+F ++ V PDE
Sbjct: 199 KCGNVNDAQQVFDEMGDRNVVSWNSLITCYEQNGPAVEALKVFQVMLESWV-----EPDE 253
Query: 326 ITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILR 385
+T VI AC + G++ +++ K++ + ++YA +EA I
Sbjct: 254 VTLASVISACASLSAIKVGQEVHARVVKMDKLRNDIILSNAFVDMYAKCSRIKEARFIFD 313
Query: 386 KMPEDN 391
MP N
Sbjct: 314 SMPIRN 319
Score = 125 bits (313), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 81/312 (25%), Positives = 148/312 (47%), Gaps = 68/312 (21%)
Query: 56 NAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALK 115
N+++ ++ ++ + ++ M K GF+ N YTF S +C+ + RG H L K
Sbjct: 121 NSMVSGFAQHDRCEEALYYFAMMHKEGFVLNEYTFASGLSACSGLNDMNRGVQIHSLIAK 180
Query: 116 NGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHEL 175
+ ++ + ++L++MY G ++ A+ +F +M R+++SWNS+
Sbjct: 181 SPCLSDVYIGSALVDMYSKCGNVNDAQQVFDEMGDRNVVSWNSL---------------- 224
Query: 176 FDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARF 235
I+ Y ++G +LK+F+ M++S ++ T+ASV++AC +
Sbjct: 225 ---------------ITCYEQNGPAVEALKVFQVMLESWVEPDEVTLASVISACASLSAI 269
Query: 236 NEGRSVHGYTVR-TSLKPNIILDTALIDLYSKCQKVEVAQRVFDS--------------- 279
G+ VH V+ L+ +IIL A +D+Y+KC +++ A+ +FDS
Sbjct: 270 KVGQEVHARVVKMDKLRNDIILSNAFVDMYAKCSRIKEARFIFDSMPIRNVIAETSMVSG 329
Query: 280 ----------------MADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISP 323
MA+RN+V WNA+I G+ +G+ EE + LF L S+ P
Sbjct: 330 YAMAASTKAARLMFTKMAERNVVSWNALIAGYTQNGENEEALSLFCLLKR-----ESVCP 384
Query: 324 DEITFIGVICAC 335
TF ++ AC
Sbjct: 385 THYTFANILKAC 396
Score = 39.3 bits (90), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 41/221 (18%), Positives = 99/221 (44%), Gaps = 12/221 (5%)
Query: 5 LQIQAHLITSGLFF-----NNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVI 59
+Q H++ G F ++ F +L+ G + LVF+ + NA+I
Sbjct: 406 MQAHVHVLKHGFKFQSGEEDDIFVGNSLIDMYVKCGCVEEGYLVFRKMMERDCVSWNAMI 465
Query: 60 KAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKN-GV 118
++ + ++ + + +M+ +G P+ T + + +C G VE G ++ GV
Sbjct: 466 IGFAQNGYGNEALELFREMLDSGEKPDHITMIGVLSACGHAGFVEEGRHYFSSMTRDFGV 525
Query: 119 DFELPVMNSLINMYGCFGAMDCARNMFVQMSPR-DLISWNSIVSGHVRSGDMS----AAH 173
++++ G G ++ A+++ +M + D + W S+++ +++ A
Sbjct: 526 APLRDHYTCMVDLLGRAGFLEEAKSIIEEMPVQPDSVIWGSLLAACKVHRNITLGKYVAE 585
Query: 174 ELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSG 214
+LF++ N + ++ + Y++ G G ++ + + M K G
Sbjct: 586 KLFEV-ETSNSGPYVLLSNMYAELGKWGDAMNVRKLMRKEG 625
>gi|356509350|ref|XP_003523413.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g77010, mitochondrial-like [Glycine max]
Length = 678
Score = 224 bits (572), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 127/431 (29%), Positives = 219/431 (50%), Gaps = 10/431 (2%)
Query: 43 VFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGC 102
VF +P N++I Y ++ + V + M++NG ++ ++ + +
Sbjct: 257 VFDSKVDPCAVLWNSIISGYVSNGEEVEAVNLFSAMLRNGVQGDASAVANILSAASGLLV 316
Query: 103 VERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSG 162
VE H A K GV ++ V +SL++ Y + A +F ++ D I N++++
Sbjct: 317 VELVKQMHVYACKAGVTHDIVVASSLLDAYSKCQSPCEACKLFSELKEYDTILLNTMITV 376
Query: 163 HVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTM 222
+ G + A +F+ MP + ++SWN ++ G +++ P +L +F +M K + + +
Sbjct: 377 YSNCGRIEDAKLIFNTMPSKTLISWNSILVGLTQNACPSEALNIFSQMNKLDLKMDRFSF 436
Query: 223 ASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMAD 282
ASV++AC + G V G + L+ + I+ T+L+D Y KC VE+ ++VFD M
Sbjct: 437 ASVISACACRSSLELGEQVFGKAITIGLESDQIISTSLVDFYCKCGFVEIGRKVFDGMVK 496
Query: 283 RNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLT 342
+ V WN M++G+ +G E + LF + G V P ITF GV+ AC + L+
Sbjct: 497 TDEVSWNTMLMGYATNGYGIEALTLFCEMTYGGVW-----PSAITFTGVLSACDHSGLVE 551
Query: 343 EGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWV 402
EGR F M Y I P H+ CM +L+A A EEA +++ +MP D + MW+
Sbjct: 552 EGRNLFHTMKHSYNINPGIEHFSCMVDLFARAGYFEEAMDLIEEMPFQAD-----ANMWL 606
Query: 403 SLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRR 462
S+L C G + + A+ + ++P++ Y L N+ A +G WE A VRELM+ +
Sbjct: 607 SVLRGCIAHGNKTIGKMAAEQIIQLEPENTGAYIQLSNILASSGDWEGSALVRELMRDKH 666
Query: 463 MGRMPGCRLVD 473
++PGC D
Sbjct: 667 FQKIPGCSWAD 677
Score = 118 bits (296), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 80/346 (23%), Positives = 157/346 (45%), Gaps = 41/346 (11%)
Query: 43 VFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNG---FMPNSYTFVSLFGSCAK 99
+F + + N++I +YS P + + + M + +++ + G+CA
Sbjct: 120 LFNAMPSKNHLVWNSIIHSYSRHGHPGKALFLFKSMNLDPSQIVYRDAFVLATALGACAD 179
Query: 100 TGCVERGGMCHGLALKNGVDFELP--VMNSLINMYGCFGAMDCARNMFVQMSPRDLISWN 157
+ + G H +G+ EL + +SLIN+YG G +D A + + D S +
Sbjct: 180 SLALNCGKQVHARVFVDGMGLELDRVLCSSLINLYGKCGDLDSAARIVSFVRDVDEFSLS 239
Query: 158 SIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRG 217
+++SG+ +G M A +FD + V WN +ISGY +G ++ LF M+++G +G
Sbjct: 240 ALISGYANAGRMREARSVFDSKVDPCAVLWNSIISGYVSNGEEVEAVNLFSAMLRNGVQG 299
Query: 218 NDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQ--------- 268
+ +A++L+A + +H Y + + +I++ ++L+D YSKCQ
Sbjct: 300 DASAVANILSAASGLLVVELVKQMHVYACKAGVTHDIVVASSLLDAYSKCQSPCEACKLF 359
Query: 269 ----------------------KVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIK 306
++E A+ +F++M + L+ WN++++G + P E +
Sbjct: 360 SELKEYDTILLNTMITVYSNCGRIEDAKLIFNTMPSKTLISWNSILVGLTQNACPSEALN 419
Query: 307 LFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMI 352
+F+ + + D +F VI AC L G + F + I
Sbjct: 420 IFSQMNK-----LDLKMDRFSFASVISACACRSSLELGEQVFGKAI 460
Score = 103 bits (258), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 70/229 (30%), Positives = 108/229 (47%), Gaps = 36/229 (15%)
Query: 126 NSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVV 185
N+L+ + G A ++F M + SWN +VS +SG + AH LF+ MP +N +
Sbjct: 71 NTLVQAHLNSGHTHSALHLFNAMPHKTHFSWNMVVSAFAKSGHLQLAHSLFNAMPSKNHL 130
Query: 186 SWNIMISGYSKSGNPGCSLKLFREMM--KSGFRGNDK-TMASVLTACGRSARFNEGRSVH 242
WN +I YS+ G+PG +L LF+ M S D +A+ L AC S N G+ VH
Sbjct: 131 VWNSIIHSYSRHGHPGKALFLFKSMNLDPSQIVYRDAFVLATALGACADSLALNCGKQVH 190
Query: 243 G--YTVRTSLKPNIILDTALIDLYSKCQKVEVAQR------------------------- 275
+ L+ + +L ++LI+LY KC ++ A R
Sbjct: 191 ARVFVDGMGLELDRVLCSSLINLYGKCGDLDSAARIVSFVRDVDEFSLSALISGYANAGR 250
Query: 276 ------VFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAG 318
VFDS D V WN++I G+ +G+ E + LF+A++ V G
Sbjct: 251 MREARSVFDSKVDPCAVLWNSIISGYVSNGEEVEAVNLFSAMLRNGVQG 299
Score = 75.1 bits (183), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 62/267 (23%), Positives = 113/267 (42%), Gaps = 37/267 (13%)
Query: 42 LVFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTG 101
L+F + + N+++ + + P + + + QM K + ++F S+ +CA
Sbjct: 388 LIFNTMPSKTLISWNSILVGLTQNACPSEALNIFSQMNKLDLKMDRFSFASVISACACRS 447
Query: 102 CVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVS 161
+E G G A+ G++ + + SL++ Y G ++ R +F M D +SWN+
Sbjct: 448 SLELGEQVFGKAITIGLESDQIISTSLVDFYCKCGFVEIGRKVFDGMVKTDEVSWNT--- 504
Query: 162 GHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKT 221
M+ GY+ +G +L LF EM G + T
Sbjct: 505 ----------------------------MLMGYATNGYGIEALTLFCEMTYGGVWPSAIT 536
Query: 222 MASVLTACGRSARFNEGRSV-HGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSM 280
VL+AC S EGR++ H ++ P I + ++DL+++ E A + + M
Sbjct: 537 FTGVLSACDHSGLVEEGRNLFHTMKHSYNINPGIEHFSCMVDLFARAGYFEEAMDLIEEM 596
Query: 281 ---ADRNLVCWNAMILGHCIHGKPEEG 304
AD N+ W +++ G HG G
Sbjct: 597 PFQADANM--WLSVLRGCIAHGNKTIG 621
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 42/84 (50%), Gaps = 1/84 (1%)
Query: 233 ARFNEGRSVHGYTVRTS-LKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAM 291
+ EGR +H ++T L ++ + L+ LYS+C+ ++ A +FD M N WN +
Sbjct: 14 STLREGRQLHVAFLKTGILNSSVAVANRLLQLYSRCRNLQDASHLFDEMPQTNSFSWNTL 73
Query: 292 ILGHCIHGKPEEGIKLFTALVNGT 315
+ H G + LF A+ + T
Sbjct: 74 VQAHLNSGHTHSALHLFNAMPHKT 97
>gi|356546233|ref|XP_003541534.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g33760-like [Glycine max]
Length = 582
Score = 224 bits (572), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 135/474 (28%), Positives = 241/474 (50%), Gaps = 41/474 (8%)
Query: 1 MKQLLQIQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIK 60
+++L Q AHL+ +G + + T LL S GS YT +F+ +++P +F N++IK
Sbjct: 23 LRRLQQAHAHLVVTGCHRSRALLT-KLLTLSCAAGSIAYTRRLFRSVSDPDSFLFNSLIK 81
Query: 61 AYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDF 120
A S V+FY +M+ + +P++YTF S+ +CA + G + H +G
Sbjct: 82 ASSKFGFSLDAVLFYRRMLLSRIVPSTYTFTSVIKACADLSLLCIGTLVHSHVFVSGYAS 141
Query: 121 ELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMP 180
+ V +LI Y A C +PR A ++FD MP
Sbjct: 142 DSFVQAALIAFY----AKSC--------TPR-------------------VARKVFDEMP 170
Query: 181 ERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRS 240
+R++V+WN MISGY ++G ++++F +M +S + T SVL+AC + + G
Sbjct: 171 QRSIVAWNSMISGYEQNGLANEAVEVFNKMRESRVEPDSATFVSVLSACSQLGSLDFGCW 230
Query: 241 VHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGK 300
+H V + + N++L T+L++++S+C V A+ VF SM + N+V W AMI G+ +HG
Sbjct: 231 LHDCIVGSGITMNVVLATSLVNMFSRCGDVGRARAVFYSMIEGNVVLWTAMISGYGMHGY 290
Query: 301 PEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPN 360
E +++F + + P+ +TF+ V+ AC A L+ EGR F M Y + P
Sbjct: 291 GVEAMEVFHRM-----KARGVVPNSVTFVAVLSACAHAGLIDEGRSVFASMKQEYGVVPG 345
Query: 361 FAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERL 420
H+ CM +++ L EA + ++ + D +W ++L C+ + +
Sbjct: 346 VEHHVCMVDMFGRGGLLNEAYQFVKGLNSDE----LVPAVWTAMLGACKMHKNFDLGVEV 401
Query: 421 AKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDL 474
A++ ++ +P++ Y L N+YA+AG+ + V VR +M +R + + G +D+
Sbjct: 402 AENLINAEPENPGHYVLLSNMYALAGRMDRVESVRNVMIQRGLKKQVGYSTIDV 455
>gi|449443642|ref|XP_004139586.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g13600-like [Cucumis sativus]
gi|449492832|ref|XP_004159115.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g13600-like [Cucumis sativus]
Length = 663
Score = 224 bits (572), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 125/448 (27%), Positives = 233/448 (52%), Gaps = 10/448 (2%)
Query: 27 LLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPN 86
L+ A G D + VF + ++I ++ ++ + QM K+ + +
Sbjct: 166 LVDMYAKCGLIDASKRVFNTLREHNVVTWTSLISGIAHFGSQEEVYDIFYQMRKDCVIMD 225
Query: 87 SYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFV 146
++ ++ G C + G HG +K G++ +PV N+ ++MY G + A F
Sbjct: 226 NFILATILGVCEGETNISIGEQLHGFTVKTGMNSSVPVGNATLSMYAKCGDFEKASLAFE 285
Query: 147 QMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKL 206
M+ D+ISW ++++ SG++ A + F+ MPERNV+SWN M+ Y ++ LKL
Sbjct: 286 TMAAHDVISWTTMITSFSHSGNVERARDYFNRMPERNVISWNAMLGAYCQNSFWEEGLKL 345
Query: 207 FREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSK 266
+ M++ R + T +++ AC A G + V+ L ++ + + I LYS+
Sbjct: 346 YILMLRQEVRPDWITFVTMIGACSELAISKLGTQILSQAVKVGLGSDVSVVNSAITLYSR 405
Query: 267 CQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEI 326
C ++E AQ +FDS+ ++NL+ WN+++ G+ +G EG+K+ N +AG PD I
Sbjct: 406 CGRIEEAQNLFDSIQEKNLISWNSIMGGYAQNG---EGMKVIEIFQNMLMAG--CKPDHI 460
Query: 327 TFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRK 386
T+I ++ C + L+ E + +F M + I H+ CM +L+ A L + A +++ +
Sbjct: 461 TYIAILSGCSHSGLVKEAKYHFNSMTKDFGISVTLEHFVCMVDLFGRAGLLKLALDMIDQ 520
Query: 387 MPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAG 446
MP + + +W +LLS CR M E K+ ++++ ++F Y L N Y+ G
Sbjct: 521 MPFKPN-----ASIWGALLSACRIHHDTEMAELAMKNLLELNTENFESYILLANTYSSFG 575
Query: 447 QWEDVARVRELMKKRRMGRMPGCRLVDL 474
+ E V+ VR++MK++R+ + PGC +++
Sbjct: 576 RLECVSEVRQVMKEKRVQKDPGCSWIEV 603
Score = 133 bits (334), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 71/213 (33%), Positives = 115/213 (53%)
Query: 96 SCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLIS 155
+C+ G + HGL+ K G + NS+I+MY A+ A +F+++ L S
Sbjct: 2 ACSSVGYIRIAHQLHGLSEKYGFGNNKVIQNSIIDMYIKCDAIYAAEQVFLRIEKPSLFS 61
Query: 156 WNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGF 215
WN ++ G+ + +M A + F MPER+ VSWN +IS +S G SL F EM G
Sbjct: 62 WNCMIYGYSKLHEMGRAIDTFRQMPERDSVSWNTIISAFSHHGLHIQSLGTFVEMWIQGC 121
Query: 216 RGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQR 275
+ N T ASVL+AC F G+ +H VR ++++ L+D+Y+KC ++ ++R
Sbjct: 122 QPNSMTYASVLSACANIYDFQWGKHLHARIVRVEPFLDVLVGNGLVDMYAKCGLIDASKR 181
Query: 276 VFDSMADRNLVCWNAMILGHCIHGKPEEGIKLF 308
VF+++ + N+V W ++I G G EE +F
Sbjct: 182 VFNTLREHNVVTWTSLISGIAHFGSQEEVYDIF 214
Score = 114 bits (285), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 89/376 (23%), Positives = 160/376 (42%), Gaps = 69/376 (18%)
Query: 56 NAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALK 115
N +I A+S+ + Q + +++M G PNS T+ S+ +CA + G H ++
Sbjct: 94 NTIISAFSHHGLHIQSLGTFVEMWIQGCQPNSMTYASVLSACANIYDFQWGKHLHARIVR 153
Query: 116 NGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHEL 175
++ V N L++MY G +D A+ +
Sbjct: 154 VEPFLDVLVGNGLVDMYAKCGLID-------------------------------ASKRV 182
Query: 176 FDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARF 235
F+ + E NVV+W +ISG + G+ +F +M K ++ +A++L C
Sbjct: 183 FNTLREHNVVTWTSLISGIAHFGSQEEVYDIFYQMRKDCVIMDNFILATILGVCEGETNI 242
Query: 236 NEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMA-------------- 281
+ G +HG+TV+T + ++ + A + +Y+KC E A F++MA
Sbjct: 243 SIGEQLHGFTVKTGMNSSVPVGNATLSMYAKCGDFEKASLAFETMAAHDVISWTTMITSF 302
Query: 282 -----------------DRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPD 324
+RN++ WNAM+ +C + EEG+KL+ ++ V PD
Sbjct: 303 SHSGNVERARDYFNRMPERNVISWNAMLGAYCQNSFWEEGLKLYILMLRQEV-----RPD 357
Query: 325 EITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEIL 384
ITF+ +I AC + G + Q + + + + LY+ EEA+ +
Sbjct: 358 WITFVTMIGACSELAISKLGTQILSQAVKV-GLGSDVSVVNSAITLYSRCGRIEEAQNLF 416
Query: 385 RKMPEDNDNMSFESIM 400
+ E N +S+ SIM
Sbjct: 417 DSIQEKN-LISWNSIM 431
>gi|110739044|dbj|BAF01440.1| hypothetical protein [Arabidopsis thaliana]
Length = 720
Score = 224 bits (572), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 134/463 (28%), Positives = 233/463 (50%), Gaps = 42/463 (9%)
Query: 32 ADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFV 91
A GS Y VF I + NA+I ++ S P + +LQM +G +P+S+T
Sbjct: 191 AKCGSLSYAQRVFHGIRSKTVNSWNALIGGHAQSNDPRLSLDAHLQMKISGLLPDSFTVC 250
Query: 92 SLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPR 151
SL +C+K + G HG ++N ++ +L V S++++Y G + + +F M +
Sbjct: 251 SLLSACSKLKSLRLGKEVHGFIIRNWLERDLFVYLSVLSLYIHCGELCTVQALFDAMEDK 310
Query: 152 DLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMM 211
L+SWN++++G++++G P+R +L +FR+M+
Sbjct: 311 SLVSWNTVITGYLQNG-----------FPDR--------------------ALGVFRQMV 339
Query: 212 KSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVE 271
G + +M V AC GR H Y ++ L+ + + +LID+Y+K +
Sbjct: 340 LYGIQLCGISMMPVFGACSLLPSLRLGREAHAYALKHLLEDDAFIACSLIDMYAKNGSIT 399
Query: 272 VAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGV 331
+ +VF+ + +++ WNAMI+G+ IHG +E IKLF + +PD++TF+GV
Sbjct: 400 QSSKVFNGLKEKSTASWNAMIMGYGIHGLAKEAIKLFEEMQR-----TGHNPDDLTFLGV 454
Query: 332 ICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGA-ELTEEAEEILRKMPED 390
+ AC + L+ EG +Y QM + +KPN HY C+ ++ A +L + + +M E+
Sbjct: 455 LTACNHSGLIHEGLRYLDQMKSSFGLKPNLKHYACVIDMLGRAGQLDKALRVVAEEMSEE 514
Query: 391 NDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWED 450
D +W SLLS CR + M E++A +++P+ Y L N+YA G+WED
Sbjct: 515 AD-----VGIWKSLLSSCRIHQNLEMGEKVAAKLFELEPEKPENYVLLSNLYAGLGKWED 569
Query: 451 VARVRELMKKRRMGRMPGCRLVDLKEVVEKLKVGHFWRGGMKE 493
V +VR+ M + + + GC ++L V VG + G +E
Sbjct: 570 VRKVRQRMNEMSLRKDAGCSWIELNRKVFSFVVGERFLDGFEE 612
Score = 102 bits (254), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 89/370 (24%), Positives = 167/370 (45%), Gaps = 49/370 (13%)
Query: 157 NSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFR 216
N+ V+ + + G +S A +F + + V SWN +I G+++S +P SL +M SG
Sbjct: 184 NAFVASYAKCGSLSYAQRVFHGIRSKTVNSWNALIGGHAQSNDPRLSLDAHLQMKISGLL 243
Query: 217 GNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRV 276
+ T+ S+L+AC + G+ VHG+ +R L+ ++ + +++ LY C ++ Q +
Sbjct: 244 PDSFTVCSLLSACSKLKSLRLGKEVHGFIIRNWLERDLFVYLSVLSLYIHCGELCTVQAL 303
Query: 277 FDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACV 336
FD+M D++LV WN +I G+ +G P+ + +F +V + G I I+ + V AC
Sbjct: 304 FDAMEDKSLVSWNTVITGYLQNGFPDRALGVFRQMV---LYG--IQLCGISMMPVFGACS 358
Query: 337 RAELLTEGRKYFR---------------QMIDFYK--------------IKPNFAHYW-C 366
L GR+ +ID Y +K W
Sbjct: 359 LLPSLRLGREAHAYALKHLLEDDAFIACSLIDMYAKNGSITQSSKVFNGLKEKSTASWNA 418
Query: 367 MANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVA----MVERLAK 422
M Y L +EA ++ +M N + + ++ +L+ C G + ++++
Sbjct: 419 MIMGYGIHGLAKEAIKLFEEMQRTGHNP--DDLTFLGVLTACNHSGLIHEGLRYLDQMKS 476
Query: 423 SFVDMDPQDFSRYQFLLNVYAVAGQWEDVARV--RELMKKRRMG----RMPGCRLVDLKE 476
SF + P + Y ++++ AGQ + RV E+ ++ +G + CR+ E
Sbjct: 477 SF-GLKP-NLKHYACVIDMLGRAGQLDKALRVVAEEMSEEADVGIWKSLLSSCRIHQNLE 534
Query: 477 VVEKLKVGHF 486
+ EK+ F
Sbjct: 535 MGEKVAAKLF 544
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 71/297 (23%), Positives = 140/297 (47%), Gaps = 42/297 (14%)
Query: 56 NAVIKAYSNSCVPDQGVVFYLQMIK-NG---FMPNSYTFVSLFGSCAKTGCVERGGMCHG 111
N++I+ +S++ ++ + +M++ NG FMP+ T V++ CA+ + G HG
Sbjct: 7 NSMIRVFSDNGFSEESFLLLGEMMEENGDGAFMPDVATLVTVLPVCAREREIGLGKGVHG 66
Query: 112 LALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSA 171
A+K +D EL + N+L++MY G + A+ +F + ++++SWN++V G GD
Sbjct: 67 WAVKLRLDKELVLNNALMDMYSKCGCITNAQMIFKMNNNKNVVSWNTMVGGFSAEGD--- 123
Query: 172 AHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSG--FRGNDKTMASVLTAC 229
H FD++ R+M+ G + ++ T+ + + C
Sbjct: 124 THGTFDVL----------------------------RQMLAGGEDVKADEVTILNAVPVC 155
Query: 230 GRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWN 289
+ + +H Y+++ N ++ A + Y+KC + AQRVF + + + WN
Sbjct: 156 FHESFLPSLKELHCYSLKQEFVYNELVANAFVASYAKCGSLSYAQRVFHGIRSKTVNSWN 215
Query: 290 AMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRK 346
A+I GH P + A + ++G + PD T ++ AC + + L G++
Sbjct: 216 ALIGGHAQSNDPRLSLD---AHLQMKISG--LLPDSFTVCSLLSACSKLKSLRLGKE 267
Score = 96.7 bits (239), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 57/197 (28%), Positives = 92/197 (46%), Gaps = 12/197 (6%)
Query: 182 RNVVSWNIMISGYSKSGNPGCSLKLFREMMKS----GFRGNDKTMASVLTACGRSARFNE 237
RN VSWN MI +S +G S L EMM+ F + T+ +VL C R
Sbjct: 1 RNFVSWNSMIRVFSDNGFSEESFLLLGEMMEENGDGAFMPDVATLVTVLPVCAREREIGL 60
Query: 238 GRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCI 297
G+ VHG+ V+ L ++L+ AL+D+YSKC + AQ +F ++N+V WN M+ G
Sbjct: 61 GKGVHGWAVKLRLDKELVLNNALMDMYSKCGCITNAQMIFKMNNNKNVVSWNTMVGGFSA 120
Query: 298 HGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKI 357
G + ++ G G + DE+T + + C L ++ + Y +
Sbjct: 121 EGDTHGTFDVLRQMLAG---GEDVKADEVTILNAVPVCFHESFLPSLKE-----LHCYSL 172
Query: 358 KPNFAHYWCMANLYAGA 374
K F + +AN + +
Sbjct: 173 KQEFVYNELVANAFVAS 189
Score = 47.8 bits (112), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 47/191 (24%), Positives = 87/191 (45%), Gaps = 11/191 (5%)
Query: 16 LFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFY 75
L +++F +L+ A GS + VF + T NA+I Y + + + +
Sbjct: 377 LLEDDAFIACSLIDMYAKNGSITQSSKVFNGLKEKSTASWNAMIMGYGIHGLAKEAIKLF 436
Query: 76 LQMIKNGFMPNSYTFVSLFGSCAKTGCVERG-GMCHGLALKNGVDFELPVMNSLINMYGC 134
+M + G P+ TF+ + +C +G + G + G+ L +I+M G
Sbjct: 437 EEMQRTGHNPDDLTFLGVLTACNHSGLIHEGLRYLDQMKSSFGLKPNLKHYACVIDMLGR 496
Query: 135 FGAMDCA-RNMFVQMSPR-DLISWNSIVSG-----HVRSGDMSAAHELFDIMPER--NVV 185
G +D A R + +MS D+ W S++S ++ G+ AA +LF++ PE+ N V
Sbjct: 497 AGQLDKALRVVAEEMSEEADVGIWKSLLSSCRIHQNLEMGEKVAA-KLFELEPEKPENYV 555
Query: 186 SWNIMISGYSK 196
+ + +G K
Sbjct: 556 LLSNLYAGLGK 566
>gi|62320270|dbj|BAD94552.1| hypothetical protein [Arabidopsis thaliana]
Length = 694
Score = 224 bits (572), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 160/580 (27%), Positives = 273/580 (47%), Gaps = 95/580 (16%)
Query: 3 QLLQIQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAY 62
QL QI A L+ GL F+ F L+ S+ FG + VF + P F NA+I+ Y
Sbjct: 36 QLKQIHARLLVLGLQFSG-FLITKLIHASSSFGDITFARQVFDDLPRPQIFPWNAIIRGY 94
Query: 63 SNS-----------------CVPDQ------------------GVVFYLQMIKNGFMPNS 87
S + PD G + Q+ + GF +
Sbjct: 95 SRNNHFQDALLMYSNMQLARVSPDSFTFPHLLKACSGLSHLQMGRFVHAQVFRLGFDADV 154
Query: 88 YT---FVSLFGSCAKTGCVERGGMCHGLAL----------------KNG----------- 117
+ ++L+ C + G + GL L +NG
Sbjct: 155 FVQNGLIALYAKCRRLGSART--VFEGLPLPERTIVSWTAIVSAYAQNGEPMEALEIFSH 212
Query: 118 -----VDFELPVMNSLINMYGCFGAMDCARN-------MFVQMSPRDLISWNSIVSGHVR 165
V + + S++N + C + R+ M +++ P LIS N++ + +
Sbjct: 213 MRKMDVKPDWVALVSVLNAFTCLQDLKQGRSIHASVVKMGLEIEPDLLISLNTM---YAK 269
Query: 166 SGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASV 225
G ++ A LFD M N++ WN MISGY+K+G ++ +F EM+ R + ++ S
Sbjct: 270 CGQVATAKILFDKMKSPNLILWNAMISGYAKNGYAREAIDMFHEMINKDVRPDTISITSA 329
Query: 226 LTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNL 285
++AC + + RS++ Y R+ + ++ + +ALID+++KC VE A+ VFD DR++
Sbjct: 330 ISACAQVGSLEQARSMYEYVGRSDYRDDVFISSALIDMFAKCGSVEGARLVFDRTLDRDV 389
Query: 286 VCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGR 345
V W+AMI+G+ +HG+ E I L+ A+ G V P+++TF+G++ AC + ++ EG
Sbjct: 390 VVWSAMIVGYGLHGRAREAISLYRAMERGGV-----HPNDVTFLGLLMACNHSGMVREGW 444
Query: 346 KYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLL 405
+F M D +KI P HY C+ +L A ++A E+++ MP + +W +LL
Sbjct: 445 WFFNLMAD-HKINPQQQHYACVIDLLGRAGHLDQAYEVIKCMP-----VQPGVTVWGALL 498
Query: 406 SLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGR 465
S C+ V + E A+ +DP + Y L N+YA A W+ VA VR MK++ + +
Sbjct: 499 SACKKHRHVELGEYAAQQLFSIDPSNTGHYVQLSNLYAAARLWDRVAEVRVRMKEKGLNK 558
Query: 466 MPGCRLVDLKEVVEKLKVGHFWRGGMKEEVNKMMECRQSR 505
GC V+++ +E +VG EE+ + +E +SR
Sbjct: 559 DVGCSWVEVRGRLEAFRVGDK-SHPRYEEIERQVEWIESR 597
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 82/394 (20%), Positives = 150/394 (38%), Gaps = 75/394 (19%)
Query: 1 MKQLLQIQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIK 60
+KQ I A ++ GL I+L A G ++F + +P NA+I
Sbjct: 238 LKQGRSIHASVVKMGLEIEPDL-LISLNTMYAKCGQVATAKILFDKMKSPNLILWNAMIS 296
Query: 61 AYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDF 120
Y+ + + + + +MI P++ + S +CA+ G +E+ + ++
Sbjct: 297 GYAKNGYAREAIDMFHEMINKDVRPDTISITSAISACAQVGSLEQARSMYEYVGRSDYRD 356
Query: 121 ELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMP 180
++ + ++LI+M+ G+++ AR +F + RD++ W++
Sbjct: 357 DVFISSALIDMFAKCGSVEGARLVFDRTLDRDVVVWSA---------------------- 394
Query: 181 ERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRS 240
MI GY G ++ L+R M + G ND T +L AC S EG
Sbjct: 395 ---------MIVGYGLHGRAREAISLYRAMERGGVHPNDVTFLGLLMACNHSGMVREGWW 445
Query: 241 VHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGK 300
+ P +IDL + ++ A V C+ +
Sbjct: 446 FFNLMADHKINPQQQHYACVIDLLGRAGHLDQAYEVIK-----------------CMPVQ 488
Query: 301 PEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKP- 359
P G+ ++ AL++ AC + + G +Q+ + I P
Sbjct: 489 P--GVTVWGALLS--------------------ACKKHRHVELGEYAAQQL---FSIDPS 523
Query: 360 NFAHYWCMANLYAGAELTEEAEEILRKMPEDNDN 393
N HY ++NLYA A L + E+ +M E N
Sbjct: 524 NTGHYVQLSNLYAAARLWDRVAEVRVRMKEKGLN 557
Score = 42.0 bits (97), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 32/128 (25%), Positives = 60/128 (46%), Gaps = 8/128 (6%)
Query: 218 NDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVF 277
+D AS++ + A+ + +H + L+ + L T LI S + A++VF
Sbjct: 20 SDSFYASLIDSATHKAQLKQ---IHARLLVLGLQFSGFLITKLIHASSSFGDITFARQVF 76
Query: 278 DSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVR 337
D + + WNA+I G+ + ++ + +++ N +A +SPD TF ++ AC
Sbjct: 77 DDLPRPQIFPWNAIIRGYSRNNHFQDALLMYS---NMQLA--RVSPDSFTFPHLLKACSG 131
Query: 338 AELLTEGR 345
L GR
Sbjct: 132 LSHLQMGR 139
>gi|222636196|gb|EEE66328.1| hypothetical protein OsJ_22569 [Oryza sativa Japonica Group]
Length = 1287
Score = 224 bits (572), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 129/429 (30%), Positives = 223/429 (51%), Gaps = 11/429 (2%)
Query: 56 NAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALK 115
++I AYS + + V + M+ G P+ T + + +C++ +E G H L +
Sbjct: 147 TSLIAAYSRADRAKEAVDCFKNMLSEGIAPDDVTVIGVLSACSQLKDLELGCSLHLLVKE 206
Query: 116 NGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSP-RDLISWNSIVSGHVRSGDMSAAHE 174
G+ ++ +LI+MY G AR +F + R SWN+I+ G+ + G + A
Sbjct: 207 KGMSMSENLVVALIDMYAKCGDFGHAREVFDAVGRGRRPQSWNAIIDGYCKHGHVDVARS 266
Query: 175 LFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSAR 234
LFD M R+++++N MI+GY SG +L LF M + R ++ T+ S+L+AC
Sbjct: 267 LFDQMEVRDIITFNSMITGYIHSGQLREALLLFMNMRRHDLRVDNFTVVSLLSACASLGA 326
Query: 235 FNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILG 294
+GR++H ++ +I + TAL+D+Y KC +V A VF M R++ W AMI G
Sbjct: 327 LPQGRALHACIELRLVETDIYIGTALLDMYMKCGRVNEATIVFQRMGKRDVHAWTAMIAG 386
Query: 295 HCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDF 354
+G + G++ F + P+ +++I V+ AC + LL EGR YF +M
Sbjct: 387 LAFNGMGKAGLEYFYQM-----RCDGFQPNPVSYIAVLTACSHSCLLNEGRLYFDEMRIL 441
Query: 355 YKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAV 414
Y I P HY CM +L + L +EA ++++ MP M S++W S+LS CR +
Sbjct: 442 YNIHPQIEHYGCMIDLLGRSGLLDEAMDLVKTMP-----MQPNSVIWASILSACRVHKRI 496
Query: 415 AMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDL 474
+ + A+ + ++P + + Y L N+ + +WED +++R LM++R++ + G V +
Sbjct: 497 DLAQCAAEHLLKIEPDEDAVYVQLYNICIDSRKWEDASKIRMLMEERQVKKTAGYSSVTV 556
Query: 475 KEVVEKLKV 483
V K V
Sbjct: 557 AGQVHKFVV 565
Score = 125 bits (313), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 97/389 (24%), Positives = 171/389 (43%), Gaps = 40/389 (10%)
Query: 55 VNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMC---HG 111
+ A +A ++S PD V + +M + P+ +TF LF C+ + R +C H
Sbjct: 12 LRACFRAGTSSGDPDIPFVLFRRMRRAAVRPDGFTFHFLF-KCSSSS-RPRALLCTMLHA 69
Query: 112 LALKNGVDFELP-VMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMS 170
L+ + P V NSLI+MY G R F ++ +D +SW ++SG + G +S
Sbjct: 70 ACLRTMLPSAAPFVANSLIHMYTELGLAGDVRRAFDEIPVKDAVSWTMVISGLAKMGMLS 129
Query: 171 AAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACG 230
A L P R+V+SW +I+ YS++ ++ F+ M+ G +D T+ VL+AC
Sbjct: 130 DARLLLAQAPVRDVISWTSLIAAYSRADRAKEAVDCFKNMLSEGIAPDDVTVIGVLSACS 189
Query: 231 RSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMA-DRNLVCWN 289
+ G S+H + + L ALID+Y+KC A+ VFD++ R WN
Sbjct: 190 QLKDLELGCSLHLLVKEKGMSMSENLVVALIDMYAKCGDFGHAREVFDAVGRGRRPQSWN 249
Query: 290 AMILGHCIHGKPE-----------EGIKLFTALVNGTVAGGSISP--------------- 323
A+I G+C HG + I F +++ G + G +
Sbjct: 250 AIIDGYCKHGHVDVARSLFDQMEVRDIITFNSMITGYIHSGQLREALLLFMNMRRHDLRV 309
Query: 324 DEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEI 383
D T + ++ AC L +GR I+ ++ + + ++Y EA +
Sbjct: 310 DNFTVVSLLSACASLGALPQGRA-LHACIELRLVETDIYIGTALLDMYMKCGRVNEATIV 368
Query: 384 LRKMPEDNDNMSFESIMWVSLLSLCRFQG 412
++M + + + W ++++ F G
Sbjct: 369 FQRMGKRDVH------AWTAMIAGLAFNG 391
Score = 122 bits (306), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 103/468 (22%), Positives = 203/468 (43%), Gaps = 44/468 (9%)
Query: 1 MKQLLQIQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIK 60
++Q Q+ ++ +G +N F + +L+ + G TV I + N+++
Sbjct: 849 LEQGRQLHGVVLKAGWIPSNIFLSNSLVDLYSAIGDSVDTVKALNDILSEDVISWNSILS 908
Query: 61 AYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVD- 119
Y++ + V + QM+ +G MP+ +FVSL KTG + G HG+ K G
Sbjct: 909 MYADRGHMKEAVYYLKQMLWHGKMPSVRSFVSLLALSGKTGDWQLGVQIHGIVHKLGFSC 968
Query: 120 FELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIM 179
+ V +LI+MYG D + +F ++ L NS+++ S +FD
Sbjct: 969 SSVHVQTTLIDMYGKCCCFDHSLAIFNEIPSIALECCNSLITS-------SLGCNMFD-- 1019
Query: 180 PERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSAR--FNE 237
+L++ M+ G +D T ++ + A SA
Sbjct: 1020 ----------------------AALEILHCMIVEGVTPDDVTFSATMKAISLSASPSLTS 1057
Query: 238 GRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCI 297
+ +H V+ + ++ + ++LI Y+ ++ + +F+ + D N++C+ A+I
Sbjct: 1058 CQMLHSCLVKLGFEMDMAVCSSLITAYACAGQLSSSHLIFEGLLDPNVICFTAIISACAR 1117
Query: 298 HGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKI 357
+G ++LF +V+ + PD +TF+ I C +A + EGR M ++
Sbjct: 1118 YGDGARAMELFDQMVSS-----GLKPDNVTFLCAIAGCDQAGMFEEGRLVIELMRASREL 1172
Query: 358 KPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMV 417
P+ H+ CM NL + +EA E++ + P + + W SLL C+ G +
Sbjct: 1173 DPDERHFACMVNLLSRDGFVKEAMEMMEQSP-----LRHYTKAWSSLLQSCKAHGENVLG 1227
Query: 418 ERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGR 465
+R A +D+ +D + + N + G E R++E+ + + +
Sbjct: 1228 KRAANMLIDVGRKDPATTLQVSNFFNDIGDRETALRIKEMTNVKEVKK 1275
Score = 52.4 bits (124), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 54/256 (21%), Positives = 103/256 (40%), Gaps = 43/256 (16%)
Query: 55 VNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLAL 114
+N +I + + D+ Y M+ +G +TF ++ G C+ ++ HG L
Sbjct: 703 LNRMITGFIRDGLADRARAVYRWMVASGIRETPHTFSTILGVCSTYEALQ----LHGRVL 758
Query: 115 KNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHE 174
G+ V ++L+N Y M V+ SP AA
Sbjct: 759 ALGLCCNPFVGSALVNHY-----------MHVE-SPH-------------------AALS 787
Query: 175 LFDIMPERNVVSWNIMISGYSKSGNPGCSLKL---FREMMKSGFRGNDKTMASVLTACGR 231
LF +P +N N+++ G GN + +L F +M + N + + C +
Sbjct: 788 LFRELPLQNTAMCNVVLRGL---GNLKLTEELICCFLDMRRQYLELNGLSYCYAMKGCYQ 844
Query: 232 SAR-FNEGRSVHGYTVRTSLKP-NIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWN 289
+ +GR +HG ++ P NI L +L+DLYS + + + +++ WN
Sbjct: 845 NGEWLEQGRQLHGVVLKAGWIPSNIFLSNSLVDLYSAIGDSVDTVKALNDILSEDVISWN 904
Query: 290 AMILGHCIHGKPEEGI 305
+++ + G +E +
Sbjct: 905 SILSMYADRGHMKEAV 920
Score = 47.0 bits (110), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 53/230 (23%), Positives = 96/230 (41%), Gaps = 16/230 (6%)
Query: 179 MPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEG 238
M R+V S N MI+G+ + G + ++R M+ SG R T +++L C E
Sbjct: 695 MAVRDVASLNRMITGFIRDGLADRARAVYRWMVASGIRETPHTFSTILGVCST----YEA 750
Query: 239 RSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIH 298
+HG + L N + +AL++ Y + A +F + +N N ++ G
Sbjct: 751 LQLHGRVLALGLCCNPFVGSALVNHYMHVESPHAALSLFRELPLQNTAMCNVVLRGLGNL 810
Query: 299 GKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVR-AELLTEGRKYFRQMIDFYKI 357
EE I F + + +S + + C + E L +GR+ ++ I
Sbjct: 811 KLTEELICCFLDMRRQYLELNGLS-----YCYAMKGCYQNGEWLEQGRQLHGVVLKAGWI 865
Query: 358 KPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSL 407
N + +LY+ + + + L ND +S + I W S+LS+
Sbjct: 866 PSNIFLSNSLVDLYSAIGDSVDTVKAL------NDILSEDVISWNSILSM 909
>gi|414884311|tpg|DAA60325.1| TPA: hypothetical protein ZEAMMB73_267423 [Zea mays]
Length = 460
Score = 224 bits (572), Expect = 7e-56, Method: Compositional matrix adjust.
Identities = 131/417 (31%), Positives = 219/417 (52%), Gaps = 27/417 (6%)
Query: 58 VIKAYSNSCVPDQGVVFYLQM-IKNGFMPNSYTFVSLFGSCAKTGC--VERGGMCHGLAL 114
+I AYS P V+ + ++ P ++ + A G + H +A+
Sbjct: 51 LIVAYSRLERPFPAVLLLFRSCLRRSLAPTRHSLPLAISAAASAGLRHLPLALSLHAVAV 110
Query: 115 -KNGVDFELPVMNSLINMYGCFGAMDCARNMFVQM-SPRDLISWNSIVSGHVRSGDMSAA 172
+N + F+ V N+L+++Y + AR +F +M S D++S+N+++ +V +G ++ A
Sbjct: 111 YRNLLPFQ-HVANALVSLYARHTRLGDARRVFEEMPSAPDVVSYNTLMHAYVNTGSVAVA 169
Query: 173 HELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRS 232
E+F+ MP R+ SW +I+G +K+G ++ LF M++ GFR +D +A+VL+ C +
Sbjct: 170 REVFEGMPVRDATSWGTVIAGSAKAGQLEEAMALFDRMLEEGFRPDDVALAAVLSCCAQL 229
Query: 233 ARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMI 292
++GR VHG + +PN+ L T L+DLY+KC VE A+ +F++ DRN+ WNA+I
Sbjct: 230 GALDKGREVHGLVKLSRPRPNVFLCTGLVDLYAKCGCVEAAREMFEACQDRNVYTWNALI 289
Query: 293 LGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMI 352
+G ++G ++ F +V I PD A L+ R+ F M
Sbjct: 290 VGLAMYGHGTVALEYFHRMV-----ADGIRPDG-----------HAGLVDLARRIFHDME 333
Query: 353 DFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQG 412
+ + HY CMA+L A L EEA ++RKMP + DN +W +L+ CR G
Sbjct: 334 SVHNVPRELKHYGCMADLLGRAGLIEEAMNMVRKMPMEGDN-----YVWGGILAGCRMHG 388
Query: 413 AVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGC 469
V E A+ + ++P D Y + +YA AG+WEDV R+R+LM +R + R C
Sbjct: 389 NVEAAELAARHLLQLNPDDSGVYSAMAGIYAAAGRWEDVVRIRKLMDERIVRRNVAC 445
>gi|334186622|ref|NP_680717.2| tetratricopeptide repeat domain-containing protein [Arabidopsis
thaliana]
gi|357529479|sp|Q9M4P3.3|PP316_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At4g16835, mitochondrial; AltName: Full=Protein DYW10;
Flags: Precursor
gi|332658412|gb|AEE83812.1| tetratricopeptide repeat domain-containing protein [Arabidopsis
thaliana]
Length = 656
Score = 224 bits (572), Expect = 7e-56, Method: Compositional matrix adjust.
Identities = 125/393 (31%), Positives = 203/393 (51%), Gaps = 47/393 (11%)
Query: 126 NSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPER--- 182
N++I Y G M+ AR +F M ++ +SWN+++SG++ GD+ A F + P R
Sbjct: 159 NTMITGYARRGEMEKARELFYSMMEKNEVSWNAMISGYIECGDLEKASHFFKVAPVRGVV 218
Query: 183 -----------------------------NVVSWNIMISGYSKSGNPGCSLKLFREMMKS 213
N+V+WN MISGY ++ P LKLFR M++
Sbjct: 219 AWTAMITGYMKAKKVELAEAMFKDMTVNKNLVTWNAMISGYVENSRPEDGLKLFRAMLEE 278
Query: 214 GFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVA 273
G R N ++S L C + GR +H +++L ++ T+LI +Y KC ++ A
Sbjct: 279 GIRPNSSGLSSALLGCSELSALQLGRQIHQIVSKSTLCNDVTALTSLISMYCKCGELGDA 338
Query: 274 QRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVIC 333
++F+ M +++V WNAMI G+ HG ++ + LF +++ I PD ITF+ V+
Sbjct: 339 WKLFEVMKKKDVVAWNAMISGYAQHGNADKALCLFREMID-----NKIRPDWITFVAVLL 393
Query: 334 ACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDN 393
AC A L+ G YF M+ YK++P HY CM +L A EEA +++R MP
Sbjct: 394 ACNHAGLVNIGMAYFESMVRDYKVEPQPDHYTCMVDLLGRAGKLEEALKLIRSMP----- 448
Query: 394 MSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVAR 453
+ ++ +LL CR V + E A+ + ++ Q+ + Y L N+YA +WEDVAR
Sbjct: 449 FRPHAAVFGTLLGACRVHKNVELAEFAAEKLLQLNSQNAAGYVQLANIYASKNRWEDVAR 508
Query: 454 VRELMKKRRMGRMPGCRLVDLKEVVEKLKVGHF 486
VR+ MK+ + ++PG ++++ KV HF
Sbjct: 509 VRKRMKESNVVKVPGYSWIEIRN-----KVHHF 536
Score = 92.0 bits (227), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 69/247 (27%), Positives = 111/247 (44%), Gaps = 52/247 (21%)
Query: 136 GAMDCARNMFVQMSPRDLISWNSIVSG--------------------------------H 163
G +D A +F M ++ I+WNS++ G +
Sbjct: 75 GDIDGALRVFHGMRAKNTITWNSLLIGISKDPSRMMEAHQLFDEIPEPDTFSYNIMLSCY 134
Query: 164 VRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMA 223
VR+ + A FD MP ++ SWN MI+GY++ G + +LF MM+ + M
Sbjct: 135 VRNVNFEKAQSFFDRMPFKDAASWNTMITGYARRGEMEKARELFYSMMEKN-EVSWNAMI 193
Query: 224 SVLTACG---RSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSM 280
S CG +++ F + V G ++ TA+I Y K +KVE+A+ +F M
Sbjct: 194 SGYIECGDLEKASHFFKVAPVRG----------VVAWTAMITGYMKAKKVELAEAMFKDM 243
Query: 281 A-DRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAE 339
++NLV WNAMI G+ + +PE+G+KLF A++ I P+ + C
Sbjct: 244 TVNKNLVTWNAMISGYVENSRPEDGLKLFRAMLE-----EGIRPNSSGLSSALLGCSELS 298
Query: 340 LLTEGRK 346
L GR+
Sbjct: 299 ALQLGRQ 305
Score = 65.9 bits (159), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 78/312 (25%), Positives = 141/312 (45%), Gaps = 35/312 (11%)
Query: 157 NSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSL---KLFREMMKS 213
N I++ VRSGD+ A +F M +N ++WN ++ G SK +P + +LF E+ +
Sbjct: 65 NKIIARCVRSGDIDGALRVFHGMRAKNTITWNSLLIGISK--DPSRMMEAHQLFDEIPEP 122
Query: 214 GFRGNDKTMASVLTACG-RSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEV 272
D +++ +C R+ F + +S + R K +T +I Y++ ++E
Sbjct: 123 -----DTFSYNIMLSCYVRNVNFEKAQS---FFDRMPFKDAASWNT-MITGYARRGEMEK 173
Query: 273 AQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLF-TALVNGTVAGGSISPDEITFIGV 331
A+ +F SM ++N V WNAMI G+ G E+ F A V G VA + +
Sbjct: 174 ARELFYSMMEKNEVSWNAMISGYIECGDLEKASHFFKVAPVRGVVA----------WTAM 223
Query: 332 ICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPED- 390
I ++A+ + F+ M + N + M + Y E+ ++ R M E+
Sbjct: 224 ITGYMKAKKVELAEAMFKDMT----VNKNLVTWNAMISGYVENSRPEDGLKLFRAMLEEG 279
Query: 391 -NDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWE 449
N S S + L Q + + ++KS + D + L+++Y G+
Sbjct: 280 IRPNSSGLSSALLGCSELSALQLGRQIHQIVSKSTL---CNDVTALTSLISMYCKCGELG 336
Query: 450 DVARVRELMKKR 461
D ++ E+MKK+
Sbjct: 337 DAWKLFEVMKKK 348
>gi|224141479|ref|XP_002324099.1| predicted protein [Populus trichocarpa]
gi|222867101|gb|EEF04232.1| predicted protein [Populus trichocarpa]
Length = 676
Score = 224 bits (572), Expect = 7e-56, Method: Compositional matrix adjust.
Identities = 135/463 (29%), Positives = 220/463 (47%), Gaps = 43/463 (9%)
Query: 23 WTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIK-N 81
W I L+ A G +F + F A+I Y P++ + + M + +
Sbjct: 139 WNI-LISGYAKMGLLQEAKSLFDKMPERDNFSWTAMISGYVRHDRPNEALELFRMMKRSD 197
Query: 82 GFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCA 141
N +T S + A C+ G HG ++ G+D + V ++L +MYG G+++ A
Sbjct: 198 NSKSNKFTVSSALAAAAAVPCLRIGKEIHGYIMRTGLDSDEVVWSALSDMYGKCGSIEEA 257
Query: 142 RNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPG 201
R+ +FD M +R++V+W MI Y + G
Sbjct: 258 RH-------------------------------IFDKMVDRDIVTWTAMIDRYFQDGRRK 286
Query: 202 CSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALI 261
LF ++++SG R N+ T + VL AC G+ VHGY R P +AL+
Sbjct: 287 EGFDLFADLLRSGIRPNEFTFSGVLNACANQTSEELGKKVHGYMTRVGFDPFSFAASALV 346
Query: 262 DLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSI 321
+YSKC + A+RVF +L W ++I G+ +G+P+E I+ F LV
Sbjct: 347 HMYSKCGNMVSAERVFKETPQPDLFSWTSLIAGYAQNGQPDEAIRYFELLVK-----SGT 401
Query: 322 SPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAE 381
PD ITF+GV+ AC A L+ +G YF + + Y + HY C+ +L A + +EAE
Sbjct: 402 QPDHITFVGVLSACAHAGLVDKGLDYFHSIKEQYGLTHTADHYACIIDLLARSGQFDEAE 461
Query: 382 EILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNV 441
I+ KM +M + +W SLL CR G + + +R A++ +++P++ + Y L N+
Sbjct: 462 NIISKM-----SMKPDKFLWASLLGGCRIHGNLKLAQRAAEALFEIEPENPATYVTLANI 516
Query: 442 YAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLKEVVEKLKVG 484
YA AG W +VA++R+ M R + + PG + +K V VG
Sbjct: 517 YATAGMWSEVAKIRKTMDDRGVVKKPGLSWIAIKRDVHVFLVG 559
Score = 167 bits (423), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 115/359 (32%), Positives = 179/359 (49%), Gaps = 19/359 (5%)
Query: 76 LQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYG-C 134
LQ++ P++ + +L SC K+ +++G H +G L ++N L+ MY C
Sbjct: 59 LQILHQIDKPSASVYSTLIQSCIKSRLLQQGKKVHQHIKLSGFVPGLFILNRLLEMYAKC 118
Query: 135 FGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGY 194
MD ++ +F +M RDL SWN ++SG+ + G + A LFD MPER+ SW MISGY
Sbjct: 119 DSLMD-SQKLFDEMPERDLCSWNILISGYAKMGLLQEAKSLFDKMPERDNFSWTAMISGY 177
Query: 195 SKSGNPGCSLKLFREMMKS-GFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPN 253
+ P +L+LFR M +S + N T++S L A G+ +HGY +RT L +
Sbjct: 178 VRHDRPNEALELFRMMKRSDNSKSNKFTVSSALAAAAAVPCLRIGKEIHGYIMRTGLDSD 237
Query: 254 IILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVN 313
++ +AL D+Y KC +E A+ +FD M DR++V W AMI + G+ +EG LF L+
Sbjct: 238 EVVWSALSDMYGKCGSIEEARHIFDKMVDRDIVTWTAMIDRYFQDGRRKEGFDLFADLLR 297
Query: 314 GTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAG 373
I P+E TF GV+ AC G+K M +FA + ++Y+
Sbjct: 298 -----SGIRPNEFTFSGVLNACANQTSEELGKKVHGYMTRVGFDPFSFAAS-ALVHMYSK 351
Query: 374 AELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQG----AVAMVERLAKSFVDMD 428
AE + ++ P+ + W SL++ G A+ E L KS D
Sbjct: 352 CGNMVSAERVFKETPQPD------LFSWTSLIAGYAQNGQPDEAIRYFELLVKSGTQPD 404
Score = 81.6 bits (200), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 85/402 (21%), Positives = 158/402 (39%), Gaps = 79/402 (19%)
Query: 6 QIQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSNS 65
+I +++ +GL + W+ L GS + +F + + A+I Y
Sbjct: 224 EIHGYIMRTGLDSDEVVWSA-LSDMYGKCGSIEEARHIFDKMVDRDIVTWTAMIDRYFQD 282
Query: 66 CVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVM 125
+G + ++++G PN +TF + +CA E G HG + G D
Sbjct: 283 GRRKEGFDLFADLLRSGIRPNEFTFSGVLNACANQTSEELGKKVHGYMTRVGFDPFSFAA 342
Query: 126 NSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVV 185
++L++MY G M A +F + DL SW S+++
Sbjct: 343 SALVHMYSKCGNMVSAERVFKETPQPDLFSWTSLIA------------------------ 378
Query: 186 SWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRS-VHGY 244
GY+++G P +++ F ++KSG + + T VL+AC + ++G H
Sbjct: 379 -------GYAQNGQPDEAIRYFELLVKSGTQPDHITFVGVLSACAHAGLVDKGLDYFHSI 431
Query: 245 TVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADR-NLVCWNAMILGHCIHGKPEE 303
+ L +IDL ++ + + A+ + M+ + + W +++ G IHG
Sbjct: 432 KEQYGLTHTADHYACIIDLLARSGQFDEAENIISKMSMKPDKFLWASLLGGCRIHG---- 487
Query: 304 GIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKP-NFA 362
+KL A AE L ++I+P N A
Sbjct: 488 NLKL--------------------------AQRAAEAL-------------FEIEPENPA 508
Query: 363 HYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSL 404
Y +AN+YA A + E +I RK +D + + W+++
Sbjct: 509 TYVTLANIYATAGMWSEVAKI-RKTMDDRGVVKKPGLSWIAI 549
>gi|224083626|ref|XP_002307076.1| predicted protein [Populus trichocarpa]
gi|222856525|gb|EEE94072.1| predicted protein [Populus trichocarpa]
Length = 733
Score = 224 bits (572), Expect = 7e-56, Method: Compositional matrix adjust.
Identities = 122/389 (31%), Positives = 209/389 (53%), Gaps = 34/389 (8%)
Query: 103 VERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSG 162
V G HGL ++ + V N+L++MY FG ++ A +F + SWN++V G
Sbjct: 352 VREGKAFHGLIVRRNYVLDDTVNNALLSMYCKFGTLNPAEKLFDGVHEWSKESWNTMVFG 411
Query: 163 HVR--------SGDMSAAHELFDIM---------------PERNVVSWNIMISGYSKSGN 199
+V D+S A+ L D+ +R+VV+WN +IS Y+ SG+
Sbjct: 412 YVHCYIIKNSVDEDVSIANSLIDMYGKGGNLSIAWKMFCRTQRDVVTWNTLISSYTHSGH 471
Query: 200 PGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTA 259
++ LF EM+ N T+ VL+AC +G+ VH Y + N+ L TA
Sbjct: 472 YAEAITLFDEMISEKLNPNSATLVIVLSACCHLPSLEKGKMVHQYIKEGGFELNVSLGTA 531
Query: 260 LIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGG 319
L+D+Y+KC ++E ++ +F+SM +++++ WN MI G+ +HG +++F + V
Sbjct: 532 LVDMYAKCGQLEQSRELFNSMKEKDVISWNVMISGYGLHGDANSAMEVFQQMEQSNV--- 588
Query: 320 SISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEE 379
P+ ITF+ ++ AC A + EG++ F +M +Y IKPN H+ CMA+L + +E
Sbjct: 589 --KPNAITFLSLLSACTHAGYVDEGKQLFDRM-QYYSIKPNLKHFACMADLLGRSGNLQE 645
Query: 380 AEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLL 439
AE++++ MP + + +W +LLS C+ + + R+AK ++ DP++ Y L
Sbjct: 646 AEDLVQSMP-----ICPDGGVWGTLLSACKIHNEIEIGIRVAKCAIESDPENDGYYIMLS 700
Query: 440 NVYAVAGQWEDVARVRELMKKRRMGRMPG 468
N+Y G+W++ R RELMK+R +G+ G
Sbjct: 701 NMYGSMGKWDEAERARELMKERGIGKRAG 729
Score = 118 bits (295), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 93/349 (26%), Positives = 158/349 (45%), Gaps = 37/349 (10%)
Query: 1 MKQLLQIQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIK 60
++ L + A +IT+G NN F + L+ A F P + VF N TF N++IK
Sbjct: 45 LQSLHKSHALIITTG-NANNVFISSKLISLYASFRKPHSSTYVFDSTNQKDTFLWNSIIK 103
Query: 61 AYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDF 120
++ ++ + FY+QM + PN +T + +CA+ +E G HGL K+G+
Sbjct: 104 SHFSNGNYFKAFDFYIQMRYDNTPPNQFTIPMIVATCAELLWLEEGKYIHGLVSKSGLFA 163
Query: 121 E-LPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIM 179
E V +S + MY G M+ A MF ++ RD++SW ++V G+V + D E
Sbjct: 164 ENSAVGSSFVYMYAKCGVMEDASLMFDEIVVRDVVSWTALVIGYVHNDDSEKGLECL--- 220
Query: 180 PERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGR 239
C + R + G + N +T+ ACG GR
Sbjct: 221 ----------------------CEM---RRIGGDGEKVNSRTLEGGFQACGNLGAMIAGR 255
Query: 240 SVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIH- 298
+HG V+T L + ++ ++L+ +YSKC VE A F + D+++ W ++I G C
Sbjct: 256 CLHGLAVKTGLGCSQVVQSSLLSMYSKCGNVEEAHNSFCQVVDKDVFSWTSVI-GVCARF 314
Query: 299 GKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKY 347
G E + LF + + PD I ++ + ++ EG+ +
Sbjct: 315 GFMNECLNLFWDM-----QVDDVYPDGIVVSCILLGFGNSMMVREGKAF 358
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 114/490 (23%), Positives = 197/490 (40%), Gaps = 80/490 (16%)
Query: 7 IQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSNSC 66
I + SGLF NS + + A G + L+F I A++ Y ++
Sbjct: 152 IHGLVSKSGLFAENSAVGSSFVYMYAKCGVMEDASLMFDEIVVRDVVSWTALVIGYVHND 211
Query: 67 VPDQGVVFYLQMIK---NGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELP 123
++G+ +M + +G NS T F +C G + G HGLA+K G+
Sbjct: 212 DSEKGLECLCEMRRIGGDGEKVNSRTLEGGFQACGNLGAMIAGRCLHGLAVKTGLGCSQV 271
Query: 124 VMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELF------D 177
V +SL++MY G ++ A N F Q+ +D+ SW S++ R G M+ LF D
Sbjct: 272 VQSSLLSMYSKCGNVEEAHNSFCQVVDKDVFSWTSVIGVCARFGFMNECLNLFWDMQVDD 331
Query: 178 IMPERNVVSWNIMISGYSKSGNPGCSLKLFREMM-KSGFRGNDKTMASVLTACGRSARFN 236
+ P+ VVS ++ G S G K F ++ + + +D ++L+ + N
Sbjct: 332 VYPDGIVVSCILLGFGNSMMVREG---KAFHGLIVRRNYVLDDTVNNALLSMYCKFGTLN 388
Query: 237 EGRS--------------------VHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRV 276
VH Y ++ S+ ++ + +LID+Y K + +A ++
Sbjct: 389 PAEKLFDGVHEWSKESWNTMVFGYVHCYIIKNSVDEDVSIANSLIDMYGKGGNLSIAWKM 448
Query: 277 FDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACV 336
F R++V WN +I + G E I LF +++ ++P+ T + V+ AC
Sbjct: 449 F-CRTQRDVVTWNTLISSYTHSGHYAEAITLFDEMIS-----EKLNPNSATLVIVLSACC 502
Query: 337 RAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPE------- 389
L +G K Q I + N + + ++YA E++ E+ M E
Sbjct: 503 HLPSLEKG-KMVHQYIKEGGFELNVSLGTALVDMYAKCGQLEQSRELFNSMKEKDVISWN 561
Query: 390 ----------------------DNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDM 427
+ N+ +I ++SLLS C G +VD
Sbjct: 562 VMISGYGLHGDANSAMEVFQQMEQSNVKPNAITFLSLLSACTHAG-----------YVDE 610
Query: 428 DPQDFSRYQF 437
Q F R Q+
Sbjct: 611 GKQLFDRMQY 620
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 63/257 (24%), Positives = 116/257 (45%), Gaps = 40/257 (15%)
Query: 56 NAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALK 115
N +I +Y++S + + + +MI PNS T V + +C +E+G M H +
Sbjct: 460 NTLISSYTHSGHYAEAITLFDEMISEKLNPNSATLVIVLSACCHLPSLEKGKMVHQYIKE 519
Query: 116 NGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHEL 175
G + + + +L++MY G ++ +R +F M +D+ISWN ++SG+ GD ++A E+
Sbjct: 520 GGFELNVSLGTALVDMYAKCGQLEQSRELFNSMKEKDVISWNVMISGYGLHGDANSAMEV 579
Query: 176 FDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARF 235
F M + NV + N T S+L+AC +
Sbjct: 580 FQQMEQSNV-------------------------------KPNAITFLSLLSACTHAGYV 608
Query: 236 NEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVC-----WNA 290
+EG+ + S+KPN+ + DL + ++ A+ + SM +C W
Sbjct: 609 DEGKQLFDRMQYYSIKPNLKHFACMADLLGRSGNLQEAEDLVQSMP----ICPDGGVWGT 664
Query: 291 MILGHCIHGKPEEGIKL 307
++ IH + E GI++
Sbjct: 665 LLSACKIHNEIEIGIRV 681
Score = 44.7 bits (104), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 33/153 (21%), Positives = 64/153 (41%), Gaps = 12/153 (7%)
Query: 206 LFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSV------HGYTVRTSLKPNIILDTA 259
LFR + S F+ + + ++ L S N+ +++ H + T N+ + +
Sbjct: 10 LFRRLFPSPFQISYHSSSNYLNCHIDSFLSNQTQTLQSLHKSHALIITTGNANNVFISSK 69
Query: 260 LIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGG 319
LI LY+ +K + VFDS ++ WN++I H +G + + +
Sbjct: 70 LISLYASFRKPHSSTYVFDSTNQKDTFLWNSIIKSHFSNGNYFKAFDFYIQMRYDNTP-- 127
Query: 320 SISPDEITFIGVICACVRAELLTEGRKYFRQMI 352
P++ T ++ C L EG KY ++
Sbjct: 128 ---PNQFTIPMIVATCAELLWLEEG-KYIHGLV 156
>gi|225430696|ref|XP_002266026.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g47840 [Vitis vinifera]
Length = 713
Score = 224 bits (572), Expect = 7e-56, Method: Compositional matrix adjust.
Identities = 141/501 (28%), Positives = 236/501 (47%), Gaps = 43/501 (8%)
Query: 6 QIQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSNS 65
+I A + G F +SF L G +Y + +F+ ++ +I
Sbjct: 238 EIHAQAMKKG-FDVSSFVANTLATMYNKCGKLEYGLTLFEKMSMRDVVSWTTIITTLVQM 296
Query: 66 CVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVM 125
+ V +++M ++ PN YTF ++ CA +E G H L L G+ L V
Sbjct: 297 GQEECAVQAFIRMRESDVSPNEYTFAAVISGCANLARIEWGEQLHALILHLGLAASLSVE 356
Query: 126 NSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVV 185
NS++ MY + G ++++ +F M R++V
Sbjct: 357 NSIMTMYA-------------------------------KCGQLTSSSVIFHEMTRRDIV 385
Query: 186 SWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYT 245
SW+ +I+GYS+ G+ + +L M G + + +ASVL+ACG A G+ +H Y
Sbjct: 386 SWSTIIAGYSQGGHVSEAFELLSWMRMEGPKPTEFALASVLSACGNMAILEHGKQLHAYV 445
Query: 246 VRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGI 305
+ L+ ++ +ALI++Y KC +E A R+FD+ + ++V W AMI G+ HG E I
Sbjct: 446 LSIGLEHTAMVLSALINMYCKCGSIEEASRIFDAAENDDIVSWTAMINGYAEHGYSREVI 505
Query: 306 KLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYW 365
LF + + PD +TFIGV+ AC A L+ G +YF M Y+I P+ HY
Sbjct: 506 DLFE-----KIPRVGLRPDSVTFIGVLSACSHAGLVDLGFRYFNAMSKKYQISPSKEHYG 560
Query: 366 CMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFV 425
CM +L A +AE ++ MP D+ ++W +LL CR G V R A+ +
Sbjct: 561 CMIDLLCRAGRLSDAEHMIEAMPFHRDD-----VVWSTLLRACRVHGDVERGRRTAERIL 615
Query: 426 DMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLKEVVEKLKVGH 485
++P + L N+YA G+W + A +R+LMK + + + PG + +K++V G
Sbjct: 616 QLEPNCAGTHITLANIYASKGKWREAADIRKLMKSKGVIKEPGWSWIKVKDLVFAFVAGD 675
Query: 486 FWRGGMKEEVNKMMECRQSRS 506
E++ M++ SR+
Sbjct: 676 R-SHPQGEDIYNMLDLLASRT 695
Score = 110 bits (276), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 79/350 (22%), Positives = 148/350 (42%), Gaps = 48/350 (13%)
Query: 56 NAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALK 115
A+I + + +V++ +M ++ +SYTF +CA +G + G H A+K
Sbjct: 186 TAIITGLVRAGYNKEALVYFSEMWRSRVEYDSYTFAIALKACADSGALNYGREIHAQAMK 245
Query: 116 NGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHEL 175
G D V N+L MY + G + L
Sbjct: 246 KGFDVSSFVANTLATMYN-------------------------------KCGKLEYGLTL 274
Query: 176 FDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARF 235
F+ M R+VVSW +I+ + G C+++ F M +S N+ T A+V++ C AR
Sbjct: 275 FEKMSMRDVVSWTTIITTLVQMGQEECAVQAFIRMRESDVSPNEYTFAAVISGCANLARI 334
Query: 236 NEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGH 295
G +H + L ++ ++ +++ +Y+KC ++ + +F M R++V W+ +I G+
Sbjct: 335 EWGEQLHALILHLGLAASLSVENSIMTMYAKCGQLTSSSVIFHEMTRRDIVSWSTIIAGY 394
Query: 296 CIHGKPEEGIKLFTAL-VNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDF 354
G E +L + + + G P E V+ AC +L G++ +
Sbjct: 395 SQGGHVSEAFELLSWMRMEGP------KPTEFALASVLSACGNMAILEHGKQ-----LHA 443
Query: 355 YKIKPNFAH----YWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIM 400
Y + H + N+Y EEA I E++D +S+ +++
Sbjct: 444 YVLSIGLEHTAMVLSALINMYCKCGSIEEASRIF-DAAENDDIVSWTAMI 492
Score = 108 bits (269), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 81/288 (28%), Positives = 144/288 (50%), Gaps = 13/288 (4%)
Query: 148 MSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLF 207
+S DL N + V++G + A +FD M +++ +SW +ISGY + + +L LF
Sbjct: 44 ISQTDLPESNKQLKELVKTGHLGNARRMFDKMSQKDEISWTTLISGYVNANDSSEALLLF 103
Query: 208 REM-MKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSK 266
+ M ++SG R + ++ ACG ++ N G +HGY V+T L ++ + +AL+D+Y+K
Sbjct: 104 KNMRVESGLRIDPFILSLAHKACGLNSDVNYGELLHGYAVKTGLVNSVFVGSALLDMYTK 163
Query: 267 CQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEI 326
K+ +RVF M RN+V W A+I G G +E + F+ + V D
Sbjct: 164 NGKIFEGRRVFHEMPMRNVVSWTAIITGLVRAGYNKEALVYFSEMWRSRV-----EYDSY 218
Query: 327 TFIGVICACVRAELLTEGRKYFRQ-MIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILR 385
TF + AC + L GR+ Q M + + A+ +A +Y E +
Sbjct: 219 TFAIALKACADSGALNYGREIHAQAMKKGFDVSSFVAN--TLATMYNKCGKLEYGLTLFE 276
Query: 386 KMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFS 433
KM D +S+ +I+ +L+ + + + AV R+ +S D+ P +++
Sbjct: 277 KMSM-RDVVSWTTII-TTLVQMGQEECAVQAFIRMRES--DVSPNEYT 320
Score = 102 bits (254), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 69/281 (24%), Positives = 119/281 (42%), Gaps = 37/281 (13%)
Query: 56 NAVIKAYSNSCVPDQGVVFYLQM-IKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLAL 114
+I Y N+ + ++ + M +++G + + +C V G + HG A+
Sbjct: 84 TTLISGYVNANDSSEALLLFKNMRVESGLRIDPFILSLAHKACGLNSDVNYGELLHGYAV 143
Query: 115 KNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHE 174
K G+ + V ++L++MY ++G +
Sbjct: 144 KTGLVNSVFVGSALLDMY-------------------------------TKNGKIFEGRR 172
Query: 175 LFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSAR 234
+F MP RNVVSW +I+G ++G +L F EM +S + T A L AC S
Sbjct: 173 VFHEMPMRNVVSWTAIITGLVRAGYNKEALVYFSEMWRSRVEYDSYTFAIALKACADSGA 232
Query: 235 FNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILG 294
N GR +H ++ + + L +Y+KC K+E +F+ M+ R++V W +I
Sbjct: 233 LNYGREIHAQAMKKGFDVSSFVANTLATMYNKCGKLEYGLTLFEKMSMRDVVSWTTIITT 292
Query: 295 HCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICAC 335
G+ E ++ F + V SP+E TF VI C
Sbjct: 293 LVQMGQEECAVQAFIRMRESDV-----SPNEYTFAAVISGC 328
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 66/306 (21%), Positives = 125/306 (40%), Gaps = 39/306 (12%)
Query: 2 KQLLQIQAHL-ITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIK 60
+QL + HL + + L NS T+ A G + ++F + + +I
Sbjct: 338 EQLHALILHLGLAASLSVENSIMTM-----YAKCGQLTSSSVIFHEMTRRDIVSWSTIIA 392
Query: 61 AYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDF 120
YS + M G P + S+ +C +E G H L G++
Sbjct: 393 GYSQGGHVSEAFELLSWMRMEGPKPTEFALASVLSACGNMAILEHGKQLHAYVLSIGLEH 452
Query: 121 ELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMP 180
V+++LINMY G+++ A +F D++SW ++++G+ A H
Sbjct: 453 TAMVLSALINMYCKCGSIEEASRIFDAAENDDIVSWTAMINGY-------AEH------- 498
Query: 181 ERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEG-R 239
GYS+ + LF ++ + G R + T VL+AC + + G R
Sbjct: 499 ------------GYSRE-----VIDLFEKIPRVGLRPDSVTFIGVLSACSHAGLVDLGFR 541
Query: 240 SVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMA-DRNLVCWNAMILGHCIH 298
+ + + + P+ +IDL + ++ A+ + ++M R+ V W+ ++ +H
Sbjct: 542 YFNAMSKKYQISPSKEHYGCMIDLLCRAGRLSDAEHMIEAMPFHRDDVVWSTLLRACRVH 601
Query: 299 GKPEEG 304
G E G
Sbjct: 602 GDVERG 607
>gi|15241180|ref|NP_200442.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75171630|sp|Q9FMA1.1|PP433_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g56310
gi|10177829|dbj|BAB11258.1| unnamed protein product [Arabidopsis thaliana]
gi|332009364|gb|AED96747.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 530
Score = 224 bits (572), Expect = 7e-56, Method: Compositional matrix adjust.
Identities = 142/517 (27%), Positives = 246/517 (47%), Gaps = 20/517 (3%)
Query: 1 MKQLLQIQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIK 60
+K L Q ++I +GL +N ++ ++ G Y VF P T+ N +I+
Sbjct: 28 LKTLKQSHCYMIITGLNRDN-LNVAKFIEACSNAGHLRYAYSVFTHQPCPNTYLHNTMIR 86
Query: 61 AYSNSCVPDQ---GVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNG 117
A S P+ + Y ++ P+++TF + + V G HG + G
Sbjct: 87 ALSLLDEPNAHSIAITVYRKLWALCAKPDTFTFPFVLKIAVRVSDVWFGRQIHGQVVVFG 146
Query: 118 VDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFD 177
D + V+ LI MY G + AR MF +M +D+ WN++++G+ + G+M A L +
Sbjct: 147 FDSSVHVVTGLIQMYFSCGGLGDARKMFDEMLVKDVNVWNALLAGYGKVGEMDEARSLLE 206
Query: 178 IMP--ERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARF 235
+MP RN VSW +ISGY+KSG ++++F+ M+ ++ T+ +VL+AC
Sbjct: 207 MMPCWVRNEVSWTCVISGYAKSGRASEAIEVFQRMLMENVEPDEVTLLAVLSACADLGSL 266
Query: 236 NEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGH 295
G + Y + + L+ A+ID+Y+K + A VF+ + +RN+V W +I G
Sbjct: 267 ELGERICSYVDHRGMNRAVSLNNAVIDMYAKSGNITKALDVFECVNERNVVTWTTIIAGL 326
Query: 296 CIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFY 355
HG E + +F +V V P+++TFI ++ AC + G++ F M Y
Sbjct: 327 ATHGHGAEALAMFNRMVKAGV-----RPNDVTFIAILSACSHVGWVDLGKRLFNSMRSKY 381
Query: 356 KIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVA 415
I PN HY CM +L A EA+E+++ MP + +W SLL+ +
Sbjct: 382 GIHPNIEHYGCMIDLLGRAGKLREADEVIKSMP-----FKANAAIWGSLLAASNVHHDLE 436
Query: 416 MVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLK 475
+ ER + ++P + Y L N+Y+ G+W++ +R +MK + +M G ++++
Sbjct: 437 LGERALSELIKLEPNNSGNYMLLANLYSNLGRWDESRMMRNMMKGIGVKKMAGESSIEVE 496
Query: 476 EVVEKLKVGHFWRGGMKEEVNKMMECRQSRSLATVSK 512
V K G +V ++ E Q L SK
Sbjct: 497 NRVYKFISGDL----THPQVERIHEILQEMDLQIQSK 529
>gi|125562063|gb|EAZ07511.1| hypothetical protein OsI_29767 [Oryza sativa Indica Group]
Length = 567
Score = 224 bits (572), Expect = 7e-56, Method: Compositional matrix adjust.
Identities = 119/340 (35%), Positives = 194/340 (57%), Gaps = 15/340 (4%)
Query: 126 NSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVV 185
NS++ + G + AR MF +M R+L+SWN+++ G+ + DM A ELFD+MPE++VV
Sbjct: 230 NSMVTGFARHGLLPLARKMFDEMPVRNLVSWNAMLRGYSVNSDMDGARELFDVMPEKDVV 289
Query: 186 SWNIMISGYSKSGNPGCSLKLFREMM-KSGFRGNDKTMASVLTACGRSARFNEGRSVHGY 244
SW MISGY+++G +L+LFR M +S + N+ TM SVL+AC EGR VH +
Sbjct: 290 SWTCMISGYAQAGRYQDTLELFRAMQTESNVQPNEVTMVSVLSACANLTALEEGRWVHAF 349
Query: 245 TVRTSLKPN--IILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPE 302
+ + N L ALID+Y+KC + ++A ++F+S+ +N+ WNA+I ++G +
Sbjct: 350 IDKHKMVLNNEYNLGAALIDMYAKCGRTDIAVKIFNSLDRKNVSAWNALITRLAMNGNAQ 409
Query: 303 EGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFA 362
+ + F + P++ITF+GV+ AC L+ EGR+ F+ M ++P
Sbjct: 410 DSVDAFEQMKR-----TGEKPNDITFVGVLTACSHGGLVDEGRRCFQSMASTCGVQPEVK 464
Query: 363 HYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAK 422
HY CM ++ A L EEAEE++R MP D M F +LL CR + ER+
Sbjct: 465 HYGCMVDMLGRAGLLEEAEELIRSMPMAPDVMVFG-----ALLGACRMHKRFDVAERVQS 519
Query: 423 SF--VDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKK 460
++++ Q + + ++YA AG+W DV R+++++
Sbjct: 520 EIHSLNLNAQQSGCHVLISDIYAAAGKWFDVLEARQVVQR 559
Score = 145 bits (367), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 103/370 (27%), Positives = 184/370 (49%), Gaps = 23/370 (6%)
Query: 48 NNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVER-G 106
++ TF N +I+A ++S P + +++ G +P+ +T L GS K R G
Sbjct: 55 SSSATFLHNILIRASASSASPRLSFAAFSSLLRCGLVPDRFTLPPLLGSAGKLPAFPRTG 114
Query: 107 GMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSP-RDLISWNSIVSGHVR 165
H A++ G ++ V+N+L+ MYG R +F + D++SWN+++ G+V+
Sbjct: 115 AQVHAQAVRRGFLADVFVVNALLAMYGALRDAASMREVFGSCAGVADVVSWNTVIGGYVK 174
Query: 166 SGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASV 225
G+M +A +FD MP RN VSW+ M+ GY+ +G + ++F M G N T S+
Sbjct: 175 CGEMESAKRVFDEMPRRNGVSWSTMVGGYAAAGELDVAREMFDRMPAIG--RNVVTWNSM 232
Query: 226 LTACGRSARFNEGRSVHG-YTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRN 284
+T R R + VR N++ A++ YS ++ A+ +FD M +++
Sbjct: 233 VTGFARHGLLPLARKMFDEMPVR-----NLVSWNAMLRGYSVNSDMDGARELFDVMPEKD 287
Query: 285 LVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEG 344
+V W MI G+ G+ ++ ++LF A+ + ++ P+E+T + V+ AC L EG
Sbjct: 288 VVSWTCMISGYAQAGRYQDTLELFRAMQTES----NVQPNEVTMVSVLSACANLTALEEG 343
Query: 345 RKYFRQMIDFYKIKPNFAHYWCMA--NLYAGAELTEEAEEILRKMPEDNDNMSFESIMWV 402
R + ID +K+ N + A ++YA T+ A +I + D N+S W
Sbjct: 344 R-WVHAFIDKHKMVLNNEYNLGAALIDMYAKCGRTDIAVKIFNSL--DRKNVS----AWN 396
Query: 403 SLLSLCRFQG 412
+L++ G
Sbjct: 397 ALITRLAMNG 406
Score = 47.0 bits (110), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 35/144 (24%), Positives = 60/144 (41%), Gaps = 2/144 (1%)
Query: 7 IQAHLITSGLFFNNSF-WTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSNS 65
+ A + + NN + L+ A G D V +F ++ NA+I + +
Sbjct: 346 VHAFIDKHKMVLNNEYNLGAALIDMYAKCGRTDIAVKIFNSLDRKNVSAWNALITRLAMN 405
Query: 66 CVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMC-HGLALKNGVDFELPV 124
V + QM + G PN TFV + +C+ G V+ G C +A GV E+
Sbjct: 406 GNAQDSVDAFEQMKRTGEKPNDITFVGVLTACSHGGLVDEGRRCFQSMASTCGVQPEVKH 465
Query: 125 MNSLINMYGCFGAMDCARNMFVQM 148
+++M G G ++ A + M
Sbjct: 466 YGCMVDMLGRAGLLEEAEELIRSM 489
>gi|224094835|ref|XP_002310258.1| predicted protein [Populus trichocarpa]
gi|222853161|gb|EEE90708.1| predicted protein [Populus trichocarpa]
Length = 666
Score = 224 bits (571), Expect = 7e-56, Method: Compositional matrix adjust.
Identities = 133/450 (29%), Positives = 217/450 (48%), Gaps = 41/450 (9%)
Query: 35 GSPDYTVLVFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLF 94
G DY + +F+ + +I + + V + +M + PN +TF ++
Sbjct: 218 GKLDYGLRLFESMTQRDVVSWTTIIMSNVQIGQEENAVKAFRRMRETDVSPNEFTFAAVI 277
Query: 95 GSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLI 154
CA G +E G H ++ G+ L V NS++ MY +D A +F +S RD+I
Sbjct: 278 SGCATLGRIEWGEQLHAHVIRRGLVDSLSVANSIMAMYSKCWQLDLASTVFQGLSRRDII 337
Query: 155 SWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSG 214
SW++++SG+ + G E FD + SW M + G
Sbjct: 338 SWSTMISGYAQGG---CGEEAFDYL------SW----------------------MRREG 366
Query: 215 FRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQ 274
R N+ ASVL+ CG A +G+ +H + + L+ N ++ +ALI++YSKC ++ A
Sbjct: 367 PRPNEFAFASVLSVCGNMAILEQGKQLHAHVLCVGLEQNTMVQSALINMYSKCGSIKEAS 426
Query: 275 RVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICA 334
++FD N+V W AMI G+ HG +E I LF L + PD +TFI V+ A
Sbjct: 427 KIFDEAEYNNIVSWTAMINGYAEHGYSQEAIDLFKKL-----PKVGLRPDSVTFIAVLAA 481
Query: 335 CVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNM 394
C A L+ G YF + ++I P+ HY CM +L A +AE +++ MP D+
Sbjct: 482 CSHAGLVDLGFHYFNSLSKVHQICPSKDHYGCMIDLLCRAGRLNDAESMIQSMPFQRDD- 540
Query: 395 SFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARV 454
++W +LL CR G V +R A+ + +DP + L N+YA G+W++ A V
Sbjct: 541 ----VVWSTLLRACRIHGDVDCGKRAAEKILQLDPNCAVTHITLANMYAAKGKWKEAAEV 596
Query: 455 RELMKKRRMGRMPGCRLVDLKEVVEKLKVG 484
R++MK + + + PG + K+ V G
Sbjct: 597 RKMMKSKGVVKEPGWSWIKFKDRVSAFVSG 626
Score = 115 bits (289), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 95/430 (22%), Positives = 173/430 (40%), Gaps = 68/430 (15%)
Query: 17 FFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYL 76
F N+ F L+ G D +VFK + A+I + + + ++
Sbjct: 99 FVNSVFVGSALVDMYMKIGKVDEGCIVFKEMPLRNVVSWTAIIAGLVRAGYNKEALAYFS 158
Query: 77 QMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFG 136
M ++YTF S +CA +G + G H LK G V N+L MY G
Sbjct: 159 DMWIQKVGCDTYTFSSALKACADSGALNYGREIHCQTLKKGFTAVSFVANTLATMYNKCG 218
Query: 137 AMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSK 196
+D LF+ M +R+VVSW +I +
Sbjct: 219 KLDYGL-------------------------------RLFESMTQRDVVSWTTIIMSNVQ 247
Query: 197 SGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIIL 256
G ++K FR M ++ N+ T A+V++ C R G +H + +R L ++ +
Sbjct: 248 IGQEENAVKAFRRMRETDVSPNEFTFAAVISGCATLGRIEWGEQLHAHVIRRGLVDSLSV 307
Query: 257 DTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTV 316
+++ +YSKC ++++A VF ++ R+++ W+ MI G+ G EE + +
Sbjct: 308 ANSIMAMYSKCWQLDLASTVFQGLSRRDIISWSTMISGYAQGGCGEEAFDYLSWMRR--- 364
Query: 317 AGGSISPDEITFIGVICACVRAELLTEGRKYFRQ---------------MIDFY----KI 357
P+E F V+ C +L +G++ +I+ Y I
Sbjct: 365 --EGPRPNEFAFASVLSVCGNMAILEQGKQLHAHVLCVGLEQNTMVQSALINMYSKCGSI 422
Query: 358 KP-----------NFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLS 406
K N + M N YA ++EA ++ +K+P+ + +S+ ++++L+
Sbjct: 423 KEASKIFDEAEYNNIVSWTAMINGYAEHGYSQEAIDLFKKLPK--VGLRPDSVTFIAVLA 480
Query: 407 LCRFQGAVAM 416
C G V +
Sbjct: 481 ACSHAGLVDL 490
Score = 102 bits (253), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 76/278 (27%), Positives = 137/278 (49%), Gaps = 11/278 (3%)
Query: 157 NSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREM-MKSGF 215
N ++ V++G ++ A +LFD M +R+ +SW +ISGY N +L LF +M ++ G
Sbjct: 5 NLVLKNLVKTGHLNNARQLFDKMLQRDEISWTTIISGYVNGMNTTEALSLFSKMWVEPGL 64
Query: 216 RGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQR 275
+ ++ L ACG + + G S+HGY+V+T ++ + +AL+D+Y K KV+
Sbjct: 65 HMDPFILSLALKACGLNMSVSFGESLHGYSVKTDFVNSVFVGSALVDMYMKIGKVDEGCI 124
Query: 276 VFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICAC 335
VF M RN+V W A+I G G +E + F+ + V D TF + AC
Sbjct: 125 VFKEMPLRNVVSWTAIIAGLVRAGYNKEALAYFSDMWIQKVG-----CDTYTFSSALKAC 179
Query: 336 VRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMS 395
+ L GR+ Q + +F +A +Y + + M + D +S
Sbjct: 180 ADSGALNYGREIHCQTLKKGFTAVSFVAN-TLATMYNKCGKLDYGLRLFESMTQ-RDVVS 237
Query: 396 FESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFS 433
+ +I+ +S + + + + AV R+ ++ D+ P +F+
Sbjct: 238 WTTII-MSNVQIGQEENAVKAFRRMRET--DVSPNEFT 272
>gi|357131180|ref|XP_003567218.1| PREDICTED: pentatricopeptide repeat-containing protein At1g09220,
mitochondrial-like [Brachypodium distachyon]
Length = 474
Score = 224 bits (571), Expect = 8e-56, Method: Compositional matrix adjust.
Identities = 128/418 (30%), Positives = 218/418 (52%), Gaps = 12/418 (2%)
Query: 56 NAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALK 115
+A++KAYS+ P + + + +N ++Y F+ +CA G HGL ++
Sbjct: 64 HALLKAYSHGPFPQEALNLFRDAHRN-MADDTYAFMFSLRACAGLAWPWTGAQLHGLVIR 122
Query: 116 NGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHEL 175
G +F V SLIN Y G + AR F +M ++++SWN +++G G++ A L
Sbjct: 123 KGFEFHAYVHTSLINTYVVCGCLVDARMAFDEMPVKNVVSWNVMITGFAGRGEIEYARLL 182
Query: 176 FDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARF 235
F+ MP RNVVSW +I GY++S + ++ L R MM G + T+ +V+ A R
Sbjct: 183 FERMPSRNVVSWTGLIDGYTRSCHSVEAVALLRRMMAEGISPTEITVLAVVPAISDIGRI 242
Query: 236 NEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMAD-RNLVCWNAMILG 294
G ++HGY + L +I + +LIDLY+K ++ + +VF M + RNLV W ++I G
Sbjct: 243 LMGETLHGYCEKNGLVLDIRVGNSLIDLYAKIGSIQSSLKVFHGMLNRRNLVSWTSIISG 302
Query: 295 HCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDF 354
+HG E ++LF + I P+ +TF+ V+ AC L+ +G ++F+ M+
Sbjct: 303 FAMHGLSTEAVELFAEMRR-----SGIRPNRVTFLSVLNACSHGGLVEQGVEFFKSMVYE 357
Query: 355 YKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAV 414
Y I P H+ C+ ++ A EAE+++ +P M SI+W +LL+ C G V
Sbjct: 358 YNINPEIKHFGCIIDMLGRAGRLCEAEQVIGGLP-----MEVNSIVWRTLLACCSKYGEV 412
Query: 415 AMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLV 472
M +R K + + + + + N+ G++ D R R+L+ +R ++PG LV
Sbjct: 413 EMGKRAMKKILHTERESGGDFVVVSNMLTELGRFSDAERSRKLLDERNAVKVPGLALV 470
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 68/285 (23%), Positives = 120/285 (42%), Gaps = 34/285 (11%)
Query: 32 ADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFV 91
A G +Y L+F+ + + +I Y+ SC + V +M+ G P T +
Sbjct: 171 AGRGEIEYARLLFERMPSRNVVSWTGLIDGYTRSCHSVEAVALLRRMMAEGISPTEITVL 230
Query: 92 SLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQM-SP 150
++ + + G + G HG KNG+ ++ V NSLI++Y G++ + +F M +
Sbjct: 231 AVVPAISDIGRILMGETLHGYCEKNGLVLDIRVGNSLIDLYAKIGSIQSSLKVFHGMLNR 290
Query: 151 RDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREM 210
R+L+SW SI+SG G + A ELF EM
Sbjct: 291 RNLVSWTSIISGFAMHGLSTEAVELFA-------------------------------EM 319
Query: 211 MKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTV-RTSLKPNIILDTALIDLYSKCQK 269
+SG R N T SVL AC +G V ++ P I +ID+ + +
Sbjct: 320 RRSGIRPNRVTFLSVLNACSHGGLVEQGVEFFKSMVYEYNINPEIKHFGCIIDMLGRAGR 379
Query: 270 VEVAQRVFDSMA-DRNLVCWNAMILGHCIHGKPEEGIKLFTALVN 313
+ A++V + + N + W ++ +G+ E G + +++
Sbjct: 380 LCEAEQVIGGLPMEVNSIVWRTLLACCSKYGEVEMGKRAMKKILH 424
Score = 65.9 bits (159), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 54/189 (28%), Positives = 80/189 (42%), Gaps = 31/189 (16%)
Query: 172 AHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGR 231
AH++FD P W+ ++ YS P +L LFR+ ++ M S L AC
Sbjct: 52 AHQVFDRRP----TPWHALLKAYSHGPFPQEALNLFRDAHRNMADDTYAFMFS-LRACAG 106
Query: 232 SARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAM 291
A G +HG +R + + + T+LI+ Y C + A+ FD M +N+V WN M
Sbjct: 107 LAWPWTGAQLHGLVIRKGFEFHAYVHTSLINTYVVCGCLVDARMAFDEMPVKNVVSWNVM 166
Query: 292 ILGHCIHGKPEEGIKLF-----------TALVNG---------------TVAGGSISPDE 325
I G G+ E LF T L++G + ISP E
Sbjct: 167 ITGFAGRGEIEYARLLFERMPSRNVVSWTGLIDGYTRSCHSVEAVALLRRMMAEGISPTE 226
Query: 326 ITFIGVICA 334
IT + V+ A
Sbjct: 227 ITVLAVVPA 235
>gi|297742828|emb|CBI35582.3| unnamed protein product [Vitis vinifera]
Length = 638
Score = 224 bits (571), Expect = 8e-56, Method: Compositional matrix adjust.
Identities = 139/473 (29%), Positives = 227/473 (47%), Gaps = 48/473 (10%)
Query: 12 ITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSNSCVPDQG 71
+ S +F NS L+ A G VF ++ NA+I ++ +
Sbjct: 174 LESDIFIANS-----LIDMYAKSGHSTEASNVFYKLDAKNVVSWNAMIANFAQNRFELVA 228
Query: 72 VVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINM 131
V QM G +PNS TF ++ +CA+ G V G H ++ G F+L V N+L +M
Sbjct: 229 VGLVRQMQDYGELPNSVTFTNVLPACARMGLVRPGKEIHARSIHMGCAFDLFVSNALTDM 288
Query: 132 YGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMI 191
Y +SG + A +FD R+ VS+NI+I
Sbjct: 289 YA-------------------------------KSGHLKLARNVFDT-SLRDEVSYNILI 316
Query: 192 SGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLK 251
G+S++ + SL LF EM G + ++ + L+AC +G+ +HG+ +R
Sbjct: 317 VGHSQTSDCSESLSLFSEMQLMGLKQDNVSFMGALSACANLTAIKQGKEIHGFLLRKLFH 376
Query: 252 PNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTAL 311
++ + +L+D Y+KC ++ +A+ +FD M ++++ WN MILG+ + G+ + I LF +
Sbjct: 377 IHLFVANSLLDFYTKCGRIGLARNIFDRMTNKDVASWNTMILGYGMLGELDTAIDLFENM 436
Query: 312 VNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLY 371
V D ++FI V+ AC LL +GRKYF ++ I+P HY CM +L
Sbjct: 437 RKDDV-----EYDSVSFIAVLSACSHGGLLEKGRKYFDEL-KARGIEPTQMHYACMVDLL 490
Query: 372 AGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQD 431
A L EEA E+++ +P D + +W +LL CR G + + A+ ++ P+
Sbjct: 491 GRAGLMEEAAELIKGLPIVPD-----ANIWGALLGACRIYGNLELAAWAAEHLFELKPEH 545
Query: 432 FSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLKEVVEKLKVG 484
Y L N+YA G+W++ R+RELMK R + + PGC V + E VG
Sbjct: 546 SGYYTLLSNMYAETGRWDEANRIRELMKSRGVKKSPGCSWVQIGEQAHAFVVG 598
Score = 127 bits (318), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 96/330 (29%), Positives = 151/330 (45%), Gaps = 52/330 (15%)
Query: 52 TFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHG 111
F N +I+ YS + V G+ Y QM++ G P+ +TF + +CA V +G HG
Sbjct: 7 AFLWNTLIRGYSIAGV-GGGLEVYNQMVRIGVRPDDHTFPFVLKACADAFEVRKGREVHG 65
Query: 112 LALKNGVDFELPVMNSLINMYG-CFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMS 170
+K G + ++ V N+L++ YG C G D R
Sbjct: 66 SVVKLGFESDVFVGNTLLSFYGNCGGLRDAGR---------------------------- 97
Query: 171 AAHELFDIMPERNVVSWNIMISGYSKSG-NPGCSLKLFREMMKSGFRGNDKTMASVLTAC 229
+FD MPE+++VSWN MI +S +G + +L +FR M+ G + N T++S L
Sbjct: 98 ----VFDEMPEKDLVSWNTMIGVFSVNGWHYRDALDMFRLMIDEGLKPNSITISSFLPVL 153
Query: 230 GRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWN 289
F GR VHG ++R L+ +I + +LID+Y+K A VF + +N+V WN
Sbjct: 154 VELEFFKAGREVHGSSIRMGLESDIFIANSLIDMYAKSGHSTEASNVFYKLDAKNVVSWN 213
Query: 290 AMILGHCIHGKPEEGIKLFT-ALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYF 348
AMI + +L LV G + P+ +TF V+ AC R L+ G++
Sbjct: 214 AMIANFA-----QNRFELVAVGLVRQMQDYGEL-PNSVTFTNVLPACARMGLVRPGKEIH 267
Query: 349 RQMIDFYKIKPNFAHYWCMANLYAGAELTE 378
+ I H C +L+ LT+
Sbjct: 268 ARSI----------HMGCAFDLFVSNALTD 287
Score = 92.0 bits (227), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 55/206 (26%), Positives = 98/206 (47%), Gaps = 8/206 (3%)
Query: 187 WNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTV 246
WN +I GYS +G G L+++ +M++ G R +D T VL AC + +GR VHG V
Sbjct: 10 WNTLIRGYSIAG-VGGGLEVYNQMVRIGVRPDDHTFPFVLKACADAFEVRKGREVHGSVV 68
Query: 247 RTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHG-KPEEGI 305
+ + ++ + L+ Y C + A RVFD M +++LV WN MI ++G + +
Sbjct: 69 KLGFESDVFVGNTLLSFYGNCGGLRDAGRVFDEMPEKDLVSWNTMIGVFSVNGWHYRDAL 128
Query: 306 KLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYW 365
+F +++ + P+ IT + V E GR+ I ++ +
Sbjct: 129 DMFRLMID-----EGLKPNSITISSFLPVLVELEFFKAGREVHGSSIRM-GLESDIFIAN 182
Query: 366 CMANLYAGAELTEEAEEILRKMPEDN 391
+ ++YA + + EA + K+ N
Sbjct: 183 SLIDMYAKSGHSTEASNVFYKLDAKN 208
>gi|449438685|ref|XP_004137118.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g02330-like [Cucumis sativus]
gi|449528041|ref|XP_004171015.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g02330-like [Cucumis sativus]
Length = 868
Score = 224 bits (571), Expect = 8e-56, Method: Compositional matrix adjust.
Identities = 125/437 (28%), Positives = 221/437 (50%), Gaps = 43/437 (9%)
Query: 47 INNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERG 106
I +P ++ NA+I A + + + + M+++ P+ +T+ S+ +CA G
Sbjct: 422 IRDPVSW--NAIITACEQNESEGKTLSHFGAMLRSKMEPDEFTYGSVLKACAGQRAFSNG 479
Query: 107 GMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRS 166
HG +K+G+ ++ V ++L++MY G M+ A + H R
Sbjct: 480 MEVHGRIIKSGMGLKMFVGSALVDMYSKCGMMEEAEKI------------------HYR- 520
Query: 167 GDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVL 226
+ E+ +VSWN +ISG+S S + F M++ G ++ T A+VL
Sbjct: 521 ------------LEEQTMVSWNAIISGFSLQKKSEDSQRFFSHMLEMGVEPDNFTYATVL 568
Query: 227 TACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLV 286
C A G+ +H ++ L ++ + + L+D+YSKC + + +F R+ V
Sbjct: 569 DTCANLATVGLGKQIHAQMIKLELLSDVYITSTLVDMYSKCGNMHDSLLMFRKAPKRDSV 628
Query: 287 CWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRK 346
WNAMI G HG EE ++LF +++ +I P+ TF+ V+ AC +G
Sbjct: 629 TWNAMICGFAYHGLGEEALELFEHMLH-----ENIKPNHATFVSVLRACSHVGNAKKGLF 683
Query: 347 YFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLS 406
YF++M Y ++P HY CM ++ + EEA +++ MP + D +I+W +LLS
Sbjct: 684 YFQKMASIYALEPQLEHYSCMVDILGRSGQVEEALRLIQDMPFEAD-----AIIWRTLLS 738
Query: 407 LCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRM 466
+C+ QG V + E+ A S + +DP+D S Y L N+YA AG W+ V+++R+ M+ + +
Sbjct: 739 ICKIQGNVEVAEKAASSLLKLDPEDSSAYTLLSNIYADAGMWQQVSKIRQTMRSHNLKKE 798
Query: 467 PGCRLVDLKEVVEKLKV 483
PGC +++K+ V V
Sbjct: 799 PGCSWIEVKDEVHTFLV 815
Score = 128 bits (322), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 109/440 (24%), Positives = 192/440 (43%), Gaps = 80/440 (18%)
Query: 56 NAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVE---RGGMCHGL 112
NA+I Y+ + Q +LQ+ KN F S+ VSL G+ + ++ G HGL
Sbjct: 328 NAMIIGYARNEQGFQAFKLFLQLQKNSF---SFDEVSLSGALSAAAVIKGHSEGLQLHGL 384
Query: 113 ALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAA 172
A+K+ + + V N++++MYG + G + A
Sbjct: 385 AIKSNLSSNICVANAILDMYG-------------------------------KCGALVEA 413
Query: 173 HELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRS 232
LFD M R+ VSWN +I+ ++ + G +L F M++S ++ T SVL AC
Sbjct: 414 SGLFDEMEIRDPVSWNAIITACEQNESEGKTLSHFGAMLRSKMEPDEFTYGSVLKACAGQ 473
Query: 233 ARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMI 292
F+ G VHG +++ + + + +AL+D+YSKC +E A+++ + ++ +V WNA+I
Sbjct: 474 RAFSNGMEVHGRIIKSGMGLKMFVGSALVDMYSKCGMMEEAEKIHYRLEEQTMVSWNAII 533
Query: 293 LGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMI 352
G + K E+ + F+ ++ V PD T+ V+ C + G++ QMI
Sbjct: 534 SGFSLQKKSEDSQRFFSHMLEMGV-----EPDNFTYATVLDTCANLATVGLGKQIHAQMI 588
Query: 353 ------DFYKIKPNFAHYWCMANL------------------------YAGAELTEEAEE 382
D Y Y N+ +A L EEA E
Sbjct: 589 KLELLSDVYITSTLVDMYSKCGNMHDSLLMFRKAPKRDSVTWNAMICGFAYHGLGEEALE 648
Query: 383 ILRKMPEDNDNMSFESIMWVSLLSLCRFQG----AVAMVERLAKSFVDMDPQDFSRYQFL 438
+ M ++N+ +VS+L C G + +++A S ++PQ Y +
Sbjct: 649 LFEHML--HENIKPNHATFVSVLRACSHVGNAKKGLFYFQKMA-SIYALEPQ-LEHYSCM 704
Query: 439 LNVYAVAGQWEDVARVRELM 458
+++ +GQ E+ R+ + M
Sbjct: 705 VDILGRSGQVEEALRLIQDM 724
Score = 124 bits (311), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 71/224 (31%), Positives = 118/224 (52%), Gaps = 1/224 (0%)
Query: 89 TFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQM 148
TF +F C+ ++ G H + +G + V N LI MY A++ A +F +M
Sbjct: 26 TFSHIFQECSNRRALKPGKEAHAHMILSGFTPTVFVTNCLIQMYVKCCALEYAYKVFEEM 85
Query: 149 SPRDLISWNSIVSGHVRSGDMSAAHELFDIMPER-NVVSWNIMISGYSKSGNPGCSLKLF 207
RD++SWN++V G +G M A +F+ MP +VVSWN +ISGY ++G+ S+ +F
Sbjct: 86 PQRDIVSWNTMVFGCAGAGRMELAQAVFNSMPHHGDVVSWNSLISGYLQNGDIQKSIAVF 145
Query: 208 REMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKC 267
+M G + T+A L C G +HG V+ +++ +AL+D+Y+KC
Sbjct: 146 LKMRDLGVMFDHTTLAVSLKICSLLEDQVLGIQIHGIAVQMGFDYDVVTGSALVDMYAKC 205
Query: 268 QKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTAL 311
+E + VF + D+N + W+A I G + + G+KLF +
Sbjct: 206 NSLEDSLDVFSELPDKNWISWSAAIAGCVQNDQLLRGLKLFKEM 249
Score = 107 bits (267), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 83/349 (23%), Positives = 156/349 (44%), Gaps = 46/349 (13%)
Query: 56 NAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALK 115
N++I Y + + + +L+M G M + T C+ G HG+A++
Sbjct: 126 NSLISGYLQNGDIQKSIAVFLKMRDLGVMFDHTTLAVSLKICSLLEDQVLGIQIHGIAVQ 185
Query: 116 NGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHEL 175
G D+++ ++L++MY + + + ++
Sbjct: 186 MGFDYDVVTGSALVDMYA-------------------------------KCNSLEDSLDV 214
Query: 176 FDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARF 235
F +P++N +SW+ I+G ++ LKLF+EM + G + T ASV +C +
Sbjct: 215 FSELPDKNWISWSAAIAGCVQNDQLLRGLKLFKEMQRKGIGVSQSTYASVFRSCAGLSAS 274
Query: 236 NEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGH 295
G +H + ++T ++I+ TA +D+Y+KC + A ++F + D NL +NAMI+G+
Sbjct: 275 RLGTQLHCHALKTDFGSDVIVGTATLDMYAKCDNMSDAYKLFSLLPDHNLQSYNAMIIGY 334
Query: 296 CIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFY 355
+ + + KLF L S S DE++ G + A + +EG + +
Sbjct: 335 ARNEQGFQAFKLFLQLQK-----NSFSFDEVSLSGALSAAAVIKGHSEGLQ-----LHGL 384
Query: 356 KIKPNFAHYWCMAN----LYAGAELTEEAEEILRKMPEDNDNMSFESIM 400
IK N + C+AN +Y EA + +M E D +S+ +I+
Sbjct: 385 AIKSNLSSNICVANAILDMYGKCGALVEASGLFDEM-EIRDPVSWNAII 432
Score = 59.7 bits (143), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 30/122 (24%), Positives = 52/122 (42%), Gaps = 12/122 (9%)
Query: 220 KTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDS 279
KT + + C G+ H + + + P + + LI +Y KC +E A +VF+
Sbjct: 25 KTFSHIFQECSNRRALKPGKEAHAHMILSGFTPTVFVTNCLIQMYVKCCALEYAYKVFEE 84
Query: 280 MADRNLVCWNAMILGHCIHGKPEEGIKLF------------TALVNGTVAGGSISPDEIT 327
M R++V WN M+ G G+ E +F +L++G + G I
Sbjct: 85 MPQRDIVSWNTMVFGCAGAGRMELAQAVFNSMPHHGDVVSWNSLISGYLQNGDIQKSIAV 144
Query: 328 FI 329
F+
Sbjct: 145 FL 146
Score = 42.7 bits (99), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 42/200 (21%), Positives = 94/200 (47%), Gaps = 10/200 (5%)
Query: 6 QIQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSNS 65
QI A +I L ++ + T L+ + G+ ++L+F+ + NA+I ++
Sbjct: 582 QIHAQMIKLELL-SDVYITSTLVDMYSKCGNMHDSLLMFRKAPKRDSVTWNAMICGFAYH 640
Query: 66 CVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMC-HGLALKNGVDFELPV 124
+ ++ + + M+ PN TFVS+ +C+ G ++G +A ++ +L
Sbjct: 641 GLGEEALELFEHMLHENIKPNHATFVSVLRACSHVGNAKKGLFYFQKMASIYALEPQLEH 700
Query: 125 MNSLINMYGCFGAMDCARNMFVQMS-PRDLISWNSIVS-----GHVRSGDMSAAHELFDI 178
+ ++++ G G ++ A + M D I W +++S G+V + AA L +
Sbjct: 701 YSCMVDILGRSGQVEEALRLIQDMPFEADAIIWRTLLSICKIQGNVEVAE-KAASSLLKL 759
Query: 179 MPERNVVSWNIMISGYSKSG 198
PE + ++ ++ + Y+ +G
Sbjct: 760 DPE-DSSAYTLLSNIYADAG 778
>gi|224057914|ref|XP_002299387.1| predicted protein [Populus trichocarpa]
gi|222846645|gb|EEE84192.1| predicted protein [Populus trichocarpa]
Length = 814
Score = 224 bits (571), Expect = 8e-56, Method: Compositional matrix adjust.
Identities = 134/496 (27%), Positives = 231/496 (46%), Gaps = 52/496 (10%)
Query: 6 QIQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSNS 65
+I A+ + + NSF L+ + G + LVF + + NA+I Y+ S
Sbjct: 237 EIHAYALRTDDVIENSFVGSALVDMYCNCGQVESGRLVFDSVLDRKIGLWNAMIAGYAQS 296
Query: 66 CVPDQGVVFYLQM-IKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPV 124
++ ++ +++M G N+ T S+ + + + R HG +K G++ +
Sbjct: 297 EHDEKALMLFIEMEAAAGLYSNATTMSSIVPAYVRCEGISRKEGIHGYVIKRGLETNRYL 356
Query: 125 MNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNV 184
N+LI+MY R GD+ + +FD M +R++
Sbjct: 357 QNALIDMYS-------------------------------RMGDIKTSKRIFDSMEDRDI 385
Query: 185 VSWNIMISGYSKSGNPGCSLKLFREMMK----------------SGFRGNDKTMASVLTA 228
VSWN +I+ Y G +L L EM + F+ N T+ +VL
Sbjct: 386 VSWNTIITSYVICGRSSDALLLLHEMQRIEEKSTYDGDYNDEKQVPFKPNSITLMTVLPG 445
Query: 229 CGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCW 288
C + +G+ +H Y +R L + + +AL+D+Y+KC + +A+RVFD M RN++ W
Sbjct: 446 CASLSALAKGKEIHAYAIRNLLASQVTVGSALVDMYAKCGCLNLARRVFDQMPIRNVITW 505
Query: 289 NAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYF 348
N +I+ + +HGK +E ++LF +V GG + P E+TFI + +C + ++ EG F
Sbjct: 506 NVIIMAYGMHGKGKESLELFEDMVAEGAKGGEVKPTEVTFIALFASCSHSGMVDEGLSLF 565
Query: 349 RQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLC 408
+M + + I+P HY C+ +L A EEA ++ MP D + W SLL C
Sbjct: 566 HKMKNEHGIEPAPDHYACIVDLVGRAGKVEEAYGLVNTMPSGFDKVG----AWSSLLGAC 621
Query: 409 RFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPG 468
R + + E A++ + + P S Y L N+Y+ AG W+ +R MK + + PG
Sbjct: 622 RIYHNIEIGEIAAENLLQLQPDVASHYVLLSNIYSSAGLWDKAMNLRRRMKAMGVKKEPG 681
Query: 469 CRLVDLKEVVEKLKVG 484
C ++ + V K G
Sbjct: 682 CSWIEYGDEVHKFLAG 697
Score = 109 bits (272), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 116/449 (25%), Positives = 193/449 (42%), Gaps = 58/449 (12%)
Query: 6 QIQAHLITSGLFFNNSFWTIN--LLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAYS 63
QI AH+ G + + S TI+ L+ G VF I N++I A
Sbjct: 31 QIHAHVFKFG-YGSFSSVTIDNTLVNMYGKCGGLGDAYKVFDRITERDQVSWNSIISALC 89
Query: 64 NSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCA---KTGCVERGGMCHGLALKNGVDF 120
+ + + M+ GF P+S+T VS+ +C+ K + G HG + G +
Sbjct: 90 RFEEWEVAIKAFRLMLMEGFEPSSFTLVSMALACSNLRKRDGLWLGKQIHGCCFRKG-HW 148
Query: 121 ELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMP 180
N+L+ MY G +D A+++ V LF+
Sbjct: 149 RTFSNNALMAMYAKLGRLDDAKSLLV----------------------------LFE--- 177
Query: 181 ERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRS 240
+R++V+WN MIS +S++ +L R M+ G + + T ASVL AC G+
Sbjct: 178 DRDLVTWNSMISSFSQNERFMEALMFLRLMVLEGVKPDGVTFASVLPACSHLDLLRTGKE 237
Query: 241 VHGYTVRT-SLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHG 299
+H Y +RT + N + +AL+D+Y C +VE + VFDS+ DR + WNAMI G+
Sbjct: 238 IHAYALRTDDVIENSFVGSALVDMYCNCGQVESGRLVFDSVLDRKIGLWNAMIAGYAQSE 297
Query: 300 KPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKP 359
E+ + LF + A + + T ++ A VR E ++ ++ I Y IK
Sbjct: 298 HDEKALMLFIEM----EAAAGLYSNATTMSSIVPAYVRCEGISR-----KEGIHGYVIKR 348
Query: 360 NFAHYWCMAN----LYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVA 415
+ N +Y+ + ++ I M ED D +S+ +I+ S + R A+
Sbjct: 349 GLETNRYLQNALIDMYSRMGDIKTSKRIFDSM-EDRDIVSWNTII-TSYVICGRSSDALL 406
Query: 416 MVERL----AKSFVDMDPQDFSRYQFLLN 440
++ + KS D D D + F N
Sbjct: 407 LLHEMQRIEEKSTYDGDYNDEKQVPFKPN 435
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 69/274 (25%), Positives = 122/274 (44%), Gaps = 42/274 (15%)
Query: 78 MIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDF--ELPVMNSLINMYGCF 135
MI +GF P+++ F ++ + A + G H K G + + N+L+NMYG
Sbjct: 1 MIGSGFSPDNFAFPAVLKAVAGIQELYLGKQIHAHVFKFGYGSFSSVTIDNTLVNMYG-- 58
Query: 136 GAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYS 195
+ G + A+++FD + ER+ VSWN +IS
Sbjct: 59 -----------------------------KCGGLGDAYKVFDRITERDQVSWNSIISALC 89
Query: 196 KSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNE---GRSVHGYTVRTSLKP 252
+ ++K FR M+ GF + T+ S+ AC + + G+ +HG R
Sbjct: 90 RFEEWEVAIKAFRLMLMEGFEPSSFTLVSMALACSNLRKRDGLWLGKQIHGCCFRKG-HW 148
Query: 253 NIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALV 312
+ AL+ +Y+K +++ A+ + DR+LV WN+MI + + E + +V
Sbjct: 149 RTFSNNALMAMYAKLGRLDDAKSLLVLFEDRDLVTWNSMISSFSQNERFMEALMFLRLMV 208
Query: 313 NGTVAGGSISPDEITFIGVICACVRAELLTEGRK 346
+ G + PD +TF V+ AC +LL G++
Sbjct: 209 ---LEG--VKPDGVTFASVLPACSHLDLLRTGKE 237
>gi|242090555|ref|XP_002441110.1| hypothetical protein SORBIDRAFT_09g020580 [Sorghum bicolor]
gi|241946395|gb|EES19540.1| hypothetical protein SORBIDRAFT_09g020580 [Sorghum bicolor]
Length = 516
Score = 224 bits (571), Expect = 8e-56, Method: Compositional matrix adjust.
Identities = 121/346 (34%), Positives = 198/346 (57%), Gaps = 11/346 (3%)
Query: 124 VMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERN 183
V +SLI+MY G + AR +F + ++ + W ++VSG+ +G A +LF MPER
Sbjct: 48 VKSSLIDMYCKCGVPEDARKVFDSIGVKNGVVWTALVSGYASNGCTGEAIDLFRSMPERG 107
Query: 184 VVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDK-TMASVLTACGRSARFNEGRSVH 242
+ +W +ISG+ K+GN ++ LF EM + G R +D +A+V+ A GR +H
Sbjct: 108 LFAWTALISGFVKAGNNTGAVGLFVEMRRDGVRIDDAFVLATVVGGAAELAALVLGRQLH 167
Query: 243 GYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPE 302
G+ + ++I+ AL+D+YSKC + A+ VF + R++V W +++G HG+ E
Sbjct: 168 GFAITLGFLSSMIVGNALVDMYSKCSDIHSAREVFGGIIVRDVVSWTTILVGEAQHGRVE 227
Query: 303 EGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFA 362
E + L+ ++ +AG + P+E+TF+G+I AC A L+ +GR+ F M Y IKP
Sbjct: 228 EVLALYDRML---LAG--MKPNEVTFVGLIYACSHAGLVQKGRQLFDSMKREYGIKPGLQ 282
Query: 363 HYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAK 422
HY C +L + + EAEE++ MP + D S W +LLS C+ M R+A
Sbjct: 283 HYTCYLDLLSRSGYLSEAEELITTMPYEPDEAS-----WGALLSACKKHNDTQMCLRVAD 337
Query: 423 SFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPG 468
+ +++ P+D S Y L NVYAV +W+ VA+VR++M + + + PG
Sbjct: 338 NLLELRPKDPSTYILLSNVYAVNCKWDSVAKVRKIMAEMEIRKEPG 383
>gi|414590987|tpg|DAA41558.1| TPA: hypothetical protein ZEAMMB73_311644 [Zea mays]
Length = 575
Score = 224 bits (571), Expect = 8e-56, Method: Compositional matrix adjust.
Identities = 124/412 (30%), Positives = 220/412 (53%), Gaps = 15/412 (3%)
Query: 74 FYLQMIKNGFMP-NSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMY 132
+ + +K+GF + + +L + AK G R + A ++ + N ++ Y
Sbjct: 61 LHARALKSGFAAADLFVRTALVEAYAKAG---RADLARA-AFDEAPRRDVFLCNVMLAAY 116
Query: 133 GCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMIS 192
G + AR +F M RD++SWN+++ G+ +G++ A E+F+ M +R+ SW+ M+S
Sbjct: 117 VTRGEVAEARRVFDGMRERDMVSWNTMIHGYAVNGEVDLAREVFNGMDDRDAFSWSSMMS 176
Query: 193 GYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKP 252
Y+K +L+L+REM + + TM SVL+AC G VH + ++
Sbjct: 177 AYTKGRRSKDALELWREMRAACVNPDCTTMVSVLSACSDMGALAVGAEVHQFVESNGVEL 236
Query: 253 NIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALV 312
++ L TALID+Y+KC +E + RVF SM ++++ W++MI+G HG + + LF+ ++
Sbjct: 237 DVKLGTALIDMYAKCGDIENSVRVFHSMPVKDVLTWSSMIIGLANHGFGHDALSLFSRML 296
Query: 313 NGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYA 372
+ + P+E+TFIGV+ +C L+++G+KYF M + + P HY CM +L
Sbjct: 297 S-----EGLQPNEVTFIGVLISCTHLGLVSDGKKYFSSMSVVHGVTPKVQHYGCMVDLLG 351
Query: 373 GAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDF 432
+ EEA++++R MP + D +++W +LL CR V + E +DP
Sbjct: 352 RSGHIEEAKQLIRDMPFEPD-----AVIWRALLGACRIYKNVEVAEEAMAKLRVLDPHAD 406
Query: 433 SRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLKEVVEKLKVG 484
Y L N+YA A WE VA +R +++ R+ R+PG ++ + + + G
Sbjct: 407 GHYVLLSNIYAQANSWEGVAEMRRTLRRERIQRIPGRSSIEWQNTIHEFISG 458
Score = 75.5 bits (184), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 60/270 (22%), Positives = 111/270 (41%), Gaps = 46/270 (17%)
Query: 35 GSPDYTVLVFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLF 94
G D VF +++ F ++++ AY+ + + +M P+ T VS+
Sbjct: 151 GEVDLAREVFNGMDDRDAFSWSSMMSAYTKGRRSKDALELWREMRAACVNPDCTTMVSVL 210
Query: 95 GSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLI 154
+C+ G + G H NGV+ ++ + +LI+MY G ++ + +F M +D++
Sbjct: 211 SACSDMGALAVGAEVHQFVESNGVELDVKLGTALIDMYAKCGDIENSVRVFHSMPVKDVL 270
Query: 155 SWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSG 214
+W+S MI G + G +L LF M+ G
Sbjct: 271 TWSS-------------------------------MIIGLANHGFGHDALSLFSRMLSEG 299
Query: 215 FRGNDKTMASVLTACGRSARFNEGRS-------VHGYTVRTSLKPNIILDTALIDLYSKC 267
+ N+ T VL +C ++G+ VHG T P + ++DL +
Sbjct: 300 LQPNEVTFIGVLISCTHLGLVSDGKKYFSSMSVVHGVT------PKVQHYGCMVDLLGRS 353
Query: 268 QKVEVAQRVFDSMA-DRNLVCWNAMILGHC 296
+E A+++ M + + V W A+ LG C
Sbjct: 354 GHIEEAKQLIRDMPFEPDAVIWRAL-LGAC 382
>gi|449524410|ref|XP_004169216.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
chloroplastic-like [Cucumis sativus]
Length = 684
Score = 224 bits (571), Expect = 8e-56, Method: Compositional matrix adjust.
Identities = 133/466 (28%), Positives = 238/466 (51%), Gaps = 48/466 (10%)
Query: 14 SGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSNSCVPDQGVV 73
+ +F NS L+ A G +F ++ NA+I Y+ + +P + +
Sbjct: 246 TDIFIANS-----LIDMYAKSGHSTEASTIFHNLDRRNIVSWNAMIANYALNRLPLEAIR 300
Query: 74 FYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYG 133
F +QM + G PN+ TF ++ +CA+ G + G H + ++ G+ +L V NSLI+MY
Sbjct: 301 FVIQMQETGECPNAVTFTNVLPACARLGFLGPGKEIHAMGVRIGLTSDLFVSNSLIDMYA 360
Query: 134 CFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISG 193
+ G + +A +F+ ++ VS+NI+I G
Sbjct: 361 -------------------------------KCGCLHSARNVFNT-SRKDEVSYNILIIG 388
Query: 194 YSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPN 253
YS++ + SL LF EM G + + + V++AC A +G+ VHG +R L +
Sbjct: 389 YSETDDCLQSLNLFSEMRLLGKKPDVVSFVGVISACANLAALKQGKEVHGVALRNHLYSH 448
Query: 254 IILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVN 313
+ + +L+D Y+KC ++++A R+F+ + +++ WN MILG+ + G+ E I +F A+ +
Sbjct: 449 LFVSNSLLDFYTKCGRIDIACRLFNQILFKDVASWNTMILGYGMIGELETAISMFEAMRD 508
Query: 314 GTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAG 373
TV D +++I V+ AC L+ G +YF +M+ +++P HY CM +L
Sbjct: 509 DTV-----QYDLVSYIAVLSACSHGGLVERGWQYFSEMLA-QRLEPTEMHYTCMVDLLGR 562
Query: 374 AELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFS 433
A EEA ++++++P ++ ++ +W +LL CR G V + R A+ ++ PQ
Sbjct: 563 AGFVEEAAKLIQQLP-----IAPDANIWGALLGACRIYGNVELGRRAAEHLFELKPQHCG 617
Query: 434 RYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLKEVVE 479
Y L N+YA G+W++ ++RELMK R + PGC V + + V
Sbjct: 618 YYILLSNIYAETGRWDEANKIRELMKSRGAKKNPGCSWVQIYDQVH 663
Score = 120 bits (301), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 98/411 (23%), Positives = 179/411 (43%), Gaps = 76/411 (18%)
Query: 78 MIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGA 137
MI G PNS T S+ + C + G HG +++ G + ++ + NSLI+MY
Sbjct: 204 MIDAGAQPNSVTISSILPVLVELECFKAGKEIHGFSMRMGTETDIFIANSLIDMYA---- 259
Query: 138 MDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKS 197
+SG + A +F + RN+VSWN MI+ Y+ +
Sbjct: 260 ---------------------------KSGHSTEASTIFHNLDRRNIVSWNAMIANYALN 292
Query: 198 GNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILD 257
P +++ +M ++G N T +VL AC R G+ +H VR L ++ +
Sbjct: 293 RLPLEAIRFVIQMQETGECPNAVTFTNVLPACARLGFLGPGKEIHAMGVRIGLTSDLFVS 352
Query: 258 TALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVA 317
+LID+Y+KC + A+ VF++ + ++ V +N +I+G+ + + LF+ + +
Sbjct: 353 NSLIDMYAKCGCLHSARNVFNT-SRKDEVSYNILIIGYSETDDCLQSLNLFSEM---RLL 408
Query: 318 GGSISPDEITFIGVICACVRAELLTEGRKYF---------------RQMIDFYK------ 356
G PD ++F+GVI AC L +G++ ++DFY
Sbjct: 409 GK--KPDVVSFVGVISACANLAALKQGKEVHGVALRNHLYSHLFVSNSLLDFYTKCGRID 466
Query: 357 ---------IKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSL 407
+ + A + M Y E A + M + D + ++ + ++++LS
Sbjct: 467 IACRLFNQILFKDVASWNTMILGYGMIGELETAISMFEAMRD--DTVQYDLVSYIAVLSA 524
Query: 408 CRFQGAVAMVERLAKSFVDMDPQDFS----RYQFLLNVYAVAGQWEDVARV 454
C G +VER + F +M Q Y ++++ AG E+ A++
Sbjct: 525 CSHGG---LVERGWQYFSEMLAQRLEPTEMHYTCMVDLLGRAGFVEEAAKL 572
Score = 105 bits (263), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 68/273 (24%), Positives = 125/273 (45%), Gaps = 36/273 (13%)
Query: 74 FYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYG 133
++ ++++ PN + +SL A E H ++K G+D ++ N+L++ YG
Sbjct: 99 YFWMILRSVIKPNLVSVISLLPISAALEDEEMTRRIHCYSVKVGLDSQVTTCNALVDAYG 158
Query: 134 CFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISG 193
+ G + A ++F+ E+N VSWN +I+G
Sbjct: 159 -------------------------------KCGSVKALWQVFNETVEKNEVSWNSIING 187
Query: 194 YSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPN 253
+ G +L FR M+ +G + N T++S+L F G+ +HG+++R + +
Sbjct: 188 LACKGRCWDALNAFRMMIDAGAQPNSVTISSILPVLVELECFKAGKEIHGFSMRMGTETD 247
Query: 254 IILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVN 313
I + +LID+Y+K A +F ++ RN+V WNAMI + ++ P E I+ +
Sbjct: 248 IFIANSLIDMYAKSGHSTEASTIFHNLDRRNIVSWNAMIANYALNRLPLEAIRFVIQMQE 307
Query: 314 GTVAGGSISPDEITFIGVICACVRAELLTEGRK 346
P+ +TF V+ AC R L G++
Sbjct: 308 -----TGECPNAVTFTNVLPACARLGFLGPGKE 335
Score = 93.2 bits (230), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 66/262 (25%), Positives = 117/262 (44%), Gaps = 32/262 (12%)
Query: 78 MIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGA 137
M++ G + +TF + C+ + + +G HG+ K G D ++ V N+L+ +YG G
Sbjct: 1 MVRRGVQLDDHTFPFVLKLCSDSFDICKGMEVHGVVFKLGFDTDVYVGNTLLMLYGNCGF 60
Query: 138 MDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKS 197
++ AR LFD MPER+VVSWN +I S +
Sbjct: 61 LNDAR-------------------------------RLFDEMPERDVVSWNTIIGLLSVN 89
Query: 198 GNPGCSLKLFREM-MKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIIL 256
G+ + + M ++S + N ++ S+L R +H Y+V+ L +
Sbjct: 90 GDYTEARNYYFWMILRSVIKPNLVSVISLLPISAALEDEEMTRRIHCYSVKVGLDSQVTT 149
Query: 257 DTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTV 316
AL+D Y KC V+ +VF+ ++N V WN++I G G+ + + F +++
Sbjct: 150 CNALVDAYGKCGSVKALWQVFNETVEKNEVSWNSIINGLACKGRCWDALNAFRMMIDAGA 209
Query: 317 AGGSISPDEITFIGVICACVRA 338
S++ I + V C +A
Sbjct: 210 QPNSVTISSILPVLVELECFKA 231
Score = 75.9 bits (185), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 74/297 (24%), Positives = 129/297 (43%), Gaps = 44/297 (14%)
Query: 12 ITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSNSCVPDQG 71
+TS LF +NS L+ A G VF + N +I YS + Q
Sbjct: 345 LTSDLFVSNS-----LIDMYAKCGCLHSARNVFN-TSRKDEVSYNILIIGYSETDDCLQS 398
Query: 72 VVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINM 131
+ + +M G P+ +FV + +CA +++G HG+AL+N + L V NSL++
Sbjct: 399 LNLFSEMRLLGKKPDVVSFVGVISACANLAALKQGKEVHGVALRNHLYSHLFVSNSLLDF 458
Query: 132 YGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMI 191
Y G +D A +F Q+ +D+ SWN+++ G+ G++ A +F+ M + + V ++++
Sbjct: 459 YTKCGRIDIACRLFNQILFKDVASWNTMILGYGMIGELETAISMFEAMRD-DTVQYDLV- 516
Query: 192 SGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLK 251
+ +VL+AC G + L+
Sbjct: 517 -----------------------------SYIAVLSACSHGGLVERGWQYFSEMLAQRLE 547
Query: 252 PNIILDTALIDLYSKCQKVEVAQRVFDSM---ADRNLVCWNAMILGHC-IHGKPEEG 304
P + T ++DL + VE A ++ + D N+ W A+ LG C I+G E G
Sbjct: 548 PTEMHYTCMVDLLGRAGFVEEAAKLIQQLPIAPDANI--WGAL-LGACRIYGNVELG 601
>gi|357467379|ref|XP_003603974.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355493022|gb|AES74225.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 566
Score = 224 bits (571), Expect = 8e-56, Method: Compositional matrix adjust.
Identities = 149/494 (30%), Positives = 227/494 (45%), Gaps = 51/494 (10%)
Query: 1 MKQLLQIQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIK 60
M Q LQ+ A I S +F + + G +Y L+ + ++ N +I+
Sbjct: 1 MSQALQLHAQFIKSQ--NQRNFSKLFTFAAQSPSGDLNYARLLLNTNPSLNSYYYNTIIR 58
Query: 61 AYSNSCVPDQGV------VFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLAL 114
AYS++ P +F LQ N P+++T+ SC + ++ HG
Sbjct: 59 AYSHTSNPTHHFQALSLFIFMLQPHTNVPKPDTFTYSFALKSCGRLKLTQQAKQLHGFIN 118
Query: 115 KNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHE 174
K G F+L + N+LI+MY G + AR +
Sbjct: 119 KMGFGFDLYIQNALIHMYSEIGELVIAR-------------------------------Q 147
Query: 175 LFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSAR 234
+FD M R+VVSW MI+G+ +++LF+ M++ G N+ T+ SVL C S
Sbjct: 148 VFDRMSHRDVVSWTSMIAGFVNHHLTVEAIQLFQRMLEVGVDVNEATVISVLRGCADSGA 207
Query: 235 FNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILG 294
+ GR VHG + + TALI +YSKC +E A+ VFD + DR++ W AMI G
Sbjct: 208 LSVGRKVHGIVKEKGIDFKANVCTALIHMYSKCGCLESAREVFDDVLDRDVFVWTAMIYG 267
Query: 295 HCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDF 354
HG +E I+LF + V PDE T + V+ A A L+ EG +F +
Sbjct: 268 LACHGMCKEAIELFLEMETCNV-----KPDERTIMVVLSAYRNAGLVREGYMFFNDVQKR 322
Query: 355 YKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAV 414
Y +KPN H+ CM +L A EEAE+ + MP M ++++W +L+ C+
Sbjct: 323 YSMKPNIKHFGCMVDLLAKGGCLEEAEDFINAMP-----MKPDAVIWRTLIWACKVHADT 377
Query: 415 AMVERLAK--SFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLV 472
ERL K M D Y NVYA G+W D A VRELM K+ + + PG +
Sbjct: 378 ERAERLMKHLELQGMSAHDSGSYILASNVYASTGKWCDKAEVRELMNKKGLVKPPGSSRI 437
Query: 473 DLKEVVEKLKVGHF 486
++ VV + +G +
Sbjct: 438 EVDGVVHEFVMGDY 451
>gi|449436862|ref|XP_004136211.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g31920-like [Cucumis sativus]
gi|449508034|ref|XP_004163198.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g31920-like [Cucumis sativus]
Length = 606
Score = 224 bits (571), Expect = 8e-56, Method: Compositional matrix adjust.
Identities = 135/485 (27%), Positives = 248/485 (51%), Gaps = 47/485 (9%)
Query: 1 MKQLLQIQAHLITSGLFFNNSFWTINLLKHSA--DFGSPDYTVLVFKCINNPGTFCVNAV 58
+++ Q+ ++ GLF + SF + ++L A D+ S DY +F+ ++ P TF N +
Sbjct: 45 LEEFKQVHVQILKFGLFLD-SFCSSSVLATCALSDWNSMDYACSIFQQLDEPTTFDFNTM 103
Query: 59 IKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGV 118
I+ Y N+ + + Y M++ P+++T+ + +CA+ ++ G HG K G+
Sbjct: 104 IRGYVNNMNFENAIYLYNDMLQREVEPDNFTYPVVLKACARLAVIQEGMQIHGHVFKLGL 163
Query: 119 DFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDI 178
+ ++ V NSLINMYG ++ + +F +M + + SW++I++ H
Sbjct: 164 EDDVYVQNSLINMYGKCRDIEMSCAIFRRMEQKSVASWSAIIAAHASLA----------- 212
Query: 179 MPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSG-FRGNDKTMASVLTACGRSARFNE 237
+ W L LF +M + G +R + + +VL+AC F+
Sbjct: 213 ------MWWE--------------CLALFEDMSREGCWRAEESILVNVLSACTHLGAFHL 252
Query: 238 GRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCI 297
GR HG ++ + N+ + T+L+D+Y KC ++ +F +M +N + ++ +I G +
Sbjct: 253 GRCAHGSLLKNITELNVAVMTSLMDMYVKCGSLQKGLCLFQNMTRKNQLSYSVIISGLGL 312
Query: 298 HGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKI 357
HG + +++F+ +V + PD++T++ V+ AC + L+ EG F +M Y+I
Sbjct: 313 HGYGRQALQIFSEMVE-----EGLEPDDVTYVSVLSACSHSGLVDEGLDLFDKMKFEYRI 367
Query: 358 KPNFAHYWCMANLYAGAELTEEAEEILRKMP-EDNDNMSFESIMWVSLLSLCRFQGAVAM 416
+P HY CM +L A L EEA ++++ MP + ND ++W SLLS C+ + +
Sbjct: 368 EPTMQHYGCMVDLKGRAGLLEEAFQLVQSMPIKAND------VLWRSLLSACKVHDNLKL 421
Query: 417 VERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLKE 476
E A++ + + S Y L N+YA A QWE+ A++R M R + + PG LV++K
Sbjct: 422 GEIAAENLFRLSSHNPSDYLVLSNMYARAQQWENAAKIRTKMINRGLIQTPGYSLVEVKS 481
Query: 477 VVEKL 481
V K
Sbjct: 482 KVYKF 486
>gi|359492976|ref|XP_002283668.2| PREDICTED: pentatricopeptide repeat-containing protein
At1g11290-like [Vitis vinifera]
Length = 762
Score = 224 bits (571), Expect = 8e-56, Method: Compositional matrix adjust.
Identities = 133/477 (27%), Positives = 246/477 (51%), Gaps = 41/477 (8%)
Query: 35 GSPDYTVLVFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLF 94
GS + V F+ I + VI A+ ++ G+ F+++M+ PN +T S
Sbjct: 219 GSLECAVKAFRRIRDKNVISWTTVISAWGDNGEAATGLQFFVEMLSECVEPNEFTLTSAL 278
Query: 95 GSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLI 154
C ++ G H L +K G + LP+ NS++ +Y G + A+ +F +M L+
Sbjct: 279 SLCCVMQSLDIGTQIHSLTIKLGFESNLPIKNSIMYLYLKCGWIHEAKKLFDEMETISLV 338
Query: 155 SWNSIVSGHVRSGDMS----AAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREM 210
+WN++++GH R D + AAH+ G +L +F ++
Sbjct: 339 TWNAMIAGHARMMDFAKDDLAAHQ----------------------CGTE--ALSIFLKL 374
Query: 211 MKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKV 270
+SG + + T +SVL+ C +G VH T++T ++++ TAL+++Y+KC +
Sbjct: 375 NRSGMKPDLFTFSSVLSVCSSLVALEQGEQVHAQTIKTGFLSDVVVGTALVNMYNKCGSI 434
Query: 271 EVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIG 330
E A + F M+ R L+ W +MI G+ +G+P++ + LF + +AG + P++ITF+G
Sbjct: 435 ERASKAFVEMSIRTLISWTSMITGYAQNGQPQQALLLFEDM---RLAG--VRPNKITFVG 489
Query: 331 VICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPED 390
V+ AC A ++ E YF+ M + YKI P HY C+ +++ +EA + +++M
Sbjct: 490 VLSACSHAGMVDEALDYFQMMKNEYKITPVMDHYACLIDMFVRLGRLDEAFDFIKEM--- 546
Query: 391 NDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWED 450
++ +W L++ CR QG + + A+ +++ P+D Y LLN+Y AG+W++
Sbjct: 547 --DLEPNEFIWSILIAGCRSQGKLELGFYAAEQLLNLKPKDTETYNLLLNMYLSAGKWKE 604
Query: 451 VARVRELMKKRRMGRMPGCRLVDLKEVVEKLK---VGHFWRGGMKEEVNKMMECRQS 504
V+RVR++MK+ ++GR+ + +K+ + K H G M E + + E +S
Sbjct: 605 VSRVRKMMKEEKLGRLKDWSWISIKDKIYSFKRNARSHAQSGEMYELLGNLHEKAKS 661
Score = 117 bits (294), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 85/358 (23%), Positives = 151/358 (42%), Gaps = 48/358 (13%)
Query: 6 QIQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSNS 65
+I AH++ +G ++F L+ A G+ + VF + ++ Y +
Sbjct: 90 KIHAHIVKTGAH-KDAFLMTFLVNVYAKCGTMETARKVFDELPRRNVVSWTTLMTGYVHD 148
Query: 66 CVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVM 125
P+ V + +M++ G P +YT + + + E G HG ++K ++F+ +
Sbjct: 149 SKPELAVQVFREMLEAGAYPTNYTLGTALSASSDLHSKELGKQIHGYSIKYRIEFDASIG 208
Query: 126 NSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVV 185
NSL ++Y G+++CA F ++ RD +NV+
Sbjct: 209 NSLCSLYSKCGSLECAVKAFRRI--RD-----------------------------KNVI 237
Query: 186 SWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYT 245
SW +IS + +G L+ F EM+ N+ T+ S L+ C + G +H T
Sbjct: 238 SWTTVISAWGDNGEAATGLQFFVEMLSECVEPNEFTLTSALSLCCVMQSLDIGTQIHSLT 297
Query: 246 VRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGH---------- 295
++ + N+ + +++ LY KC + A+++FD M +LV WNAMI GH
Sbjct: 298 IKLGFESNLPIKNSIMYLYLKCGWIHEAKKLFDEMETISLVTWNAMIAGHARMMDFAKDD 357
Query: 296 -CIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMI 352
H E + +F L + PD TF V+ C L +G + Q I
Sbjct: 358 LAAHQCGTEALSIFLKLNR-----SGMKPDLFTFSSVLSVCSSLVALEQGEQVHAQTI 410
Score = 110 bits (275), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 63/260 (24%), Positives = 115/260 (44%), Gaps = 36/260 (13%)
Query: 76 LQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCF 135
L I+ G S +V + C V H +K G + +M L+N+Y
Sbjct: 58 LSFIREGTKVESAFYVPILQECIDKKLVSDAQKIHAHIVKTGAHKDAFLMTFLVNVYAKC 117
Query: 136 GAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYS 195
G M+ AR ++FD +P RNVVSW +++GY
Sbjct: 118 GTMETAR-------------------------------KVFDELPRRNVVSWTTLMTGYV 146
Query: 196 KSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNII 255
P ++++FREM+++G + T+ + L+A G+ +HGY+++ ++ +
Sbjct: 147 HDSKPELAVQVFREMLEAGAYPTNYTLGTALSASSDLHSKELGKQIHGYSIKYRIEFDAS 206
Query: 256 LDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGT 315
+ +L LYSKC +E A + F + D+N++ W +I +G+ G++ F +++
Sbjct: 207 IGNSLCSLYSKCGSLECAVKAFRRIRDKNVISWTTVISAWGDNGEAATGLQFFVEMLSEC 266
Query: 316 VAGGSISPDEITFIGVICAC 335
V P+E T + C
Sbjct: 267 V-----EPNEFTLTSALSLC 281
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 57/111 (51%), Gaps = 3/111 (2%)
Query: 207 FREMM---KSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDL 263
FRE + + G + +L C ++ + +H + V+T + L T L+++
Sbjct: 54 FREALSFIREGTKVESAFYVPILQECIDKKLVSDAQKIHAHIVKTGAHKDAFLMTFLVNV 113
Query: 264 YSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNG 314
Y+KC +E A++VFD + RN+V W ++ G+ KPE +++F ++
Sbjct: 114 YAKCGTMETARKVFDELPRRNVVSWTTLMTGYVHDSKPELAVQVFREMLEA 164
>gi|356561520|ref|XP_003549029.1| PREDICTED: pentatricopeptide repeat-containing protein At5g42450,
mitochondrial-like [Glycine max]
Length = 506
Score = 224 bits (571), Expect = 8e-56, Method: Compositional matrix adjust.
Identities = 132/443 (29%), Positives = 229/443 (51%), Gaps = 12/443 (2%)
Query: 43 VFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGC 102
+F+ +++ +I+ + + + + +M+ + PN +TF +L S A G
Sbjct: 37 LFEEMSDLTVASATTMIQGFVKRHCHEDAIYLFSKMLASKIRPNEFTFGTLINSSAALGN 96
Query: 103 VERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSG 162
V G H A+K G+ + V +SL+++Y ++ A+ F +++S+ +++ G
Sbjct: 97 VVVGKQLHACAMKIGLSCHVFVGSSLLDLYFKQSTIEDAQKAFGDTQHPNVVSYTTLICG 156
Query: 163 HVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTM 222
+++ G A +F MPERNVVSWN M+ G S++G+ ++ F M++ GF N+ T
Sbjct: 157 YLKRGRFEDALRVFHEMPERNVVSWNAMVGGCSQTGHNEEAVNFFIGMLREGFIPNESTF 216
Query: 223 ASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMAD 282
V+ A A G+S H ++ K + + +LI Y+KC +E + +FD +
Sbjct: 217 PCVICAAANIASLGIGKSFHACAIKFLGKVDQFVGNSLISFYAKCGSMEDSLLMFDKLFK 276
Query: 283 RNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLT 342
RN+V WNAMI G+ +G+ E I F + + P+ +T +G++ AC A L+
Sbjct: 277 RNIVSWNAMICGYAQNGRGAEAISFFERMCS-----EGYKPNYVTLLGLLWACNHAGLVD 331
Query: 343 EGRKYF-RQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMW 401
EG YF R ++ + + HY CM NL A + EAE+ L+ +P D + F W
Sbjct: 332 EGYSYFNRARLESPGLLKS-EHYACMVNLLARSGRFAEAEDFLQSVPFD-PGLGF----W 385
Query: 402 VSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKR 461
+LL+ C+ + + E A+ +D+DP D S Y L N ++ AG+W DVA VR MK++
Sbjct: 386 KALLAGCQIHSNMRLGELAARKILDLDPDDVSSYVMLSNAHSAAGKWSDVATVRTEMKEK 445
Query: 462 RMGRMPGCRLVDLKEVVEKLKVG 484
M R+PG ++++ V G
Sbjct: 446 GMKRIPGSSWIEVRGEVHAFLTG 468
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 60/220 (27%), Positives = 92/220 (41%), Gaps = 36/220 (16%)
Query: 166 SGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASV 225
S A +LF+ M + V S MI G+ K ++ LF +M+ S R N+ T ++
Sbjct: 28 STTFHVACQLFEEMSDLTVASATTMIQGFVKRHCHEDAIYLFSKMLASKIRPNEFTFGTL 87
Query: 226 LTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQ----------- 274
+ + G+ +H ++ L ++ + ++L+DLY K +E AQ
Sbjct: 88 INSSAALGNVVVGKQLHACAMKIGLSCHVFVGSSLLDLYFKQSTIEDAQKAFGDTQHPNV 147
Query: 275 --------------------RVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNG 314
RVF M +RN+V WNAM+ G G EE + F G
Sbjct: 148 VSYTTLICGYLKRGRFEDALRVFHEMPERNVVSWNAMVGGCSQTGHNEEAVNFFI----G 203
Query: 315 TVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDF 354
+ G I P+E TF VICA L G+ + I F
Sbjct: 204 MLREGFI-PNESTFPCVICAAANIASLGIGKSFHACAIKF 242
Score = 44.7 bits (104), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 47/204 (23%), Positives = 94/204 (46%), Gaps = 21/204 (10%)
Query: 26 NLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMP 85
+L+ A GS + ++L+F + NA+I Y+ + + + F+ +M G+ P
Sbjct: 253 SLISFYAKCGSMEDSLLMFDKLFKRNIVSWNAMICGYAQNGRGAEAISFFERMCSEGYKP 312
Query: 86 NSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVM------NSLINMYGCFGAMD 139
N T + L +C G V+ G + N E P + ++N+ G
Sbjct: 313 NYVTLLGLLWACNHAGLVDE-----GYSYFNRARLESPGLLKSEHYACMVNLLARSGRFA 367
Query: 140 CARNMFVQMSPRD--LISWNSIVSG-----HVRSGDMSAAHELFDIMPERNVVSWNIMIS 192
A + F+Q P D L W ++++G ++R G++ AA ++ D+ P+ +V S+ ++ +
Sbjct: 368 EAED-FLQSVPFDPGLGFWKALLAGCQIHSNMRLGEL-AARKILDLDPD-DVSSYVMLSN 424
Query: 193 GYSKSGNPGCSLKLFREMMKSGFR 216
+S +G + EM + G +
Sbjct: 425 AHSAAGKWSDVATVRTEMKEKGMK 448
>gi|449440243|ref|XP_004137894.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g08820-like [Cucumis sativus]
Length = 688
Score = 224 bits (571), Expect = 9e-56, Method: Compositional matrix adjust.
Identities = 147/553 (26%), Positives = 245/553 (44%), Gaps = 83/553 (15%)
Query: 3 QLLQIQAHLITSGLFFNNSFWTINLLKHSA-DFGSPDYTVLVFKCINNPGTFCVNAVIKA 61
QL I A L+ L + + +NL+ A DFGS +Y+ LVF + P F N +I+
Sbjct: 31 QLKHIHARLLR--LHLDQDNYLLNLILCCALDFGSTNYSKLVFSQVKEPNIFLWNTMIRG 88
Query: 62 YSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFE 121
+ D + Y M GF+PN++T + +CA+ V G H L +K G D +
Sbjct: 89 LVSKDCFDDAIHLYGSMRGGGFLPNNFTIPFVLKACARKLDVRLGLKIHSLLVKAGYDHD 148
Query: 122 LPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPE 181
+ V SL+++Y D A +F + ++++SW +I++G++ SG A F + E
Sbjct: 149 VFVKTSLLSLYVKCDNFDDALKVFDDIPDKNVVSWTAIITGYISSGHFREAIGAFKKLLE 208
Query: 182 ---------------------------------------RNVVSWNIMISGYSKSGN--- 199
RNV ++ Y K GN
Sbjct: 209 MGLKPDSFSLVKVLAACARLGDCTSGEWIDRYISDSGMGRNVFVATSLLDMYVKCGNLER 268
Query: 200 ----------------------------PGCSLKLFREMMKSGFRGNDKTMASVLTACGR 231
P +L LF +M + + TM VL+AC
Sbjct: 269 ANLIFSAMPEKDIVSWSTMIQGYAFNGLPQQALDLFFQMQSENLKPDCYTMVGVLSACAT 328
Query: 232 SARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAM 291
+ G R N +L TALID+YSKC V A +F +M ++ V WNAM
Sbjct: 329 LGALDLGIWASSLMDRNEFLSNPVLGTALIDMYSKCGSVTQAWEIFTAMKRKDRVVWNAM 388
Query: 292 ILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQM 351
++G ++G + LF+ V I PDE TFIG++C C + EGR++F M
Sbjct: 389 MVGLSMNGHAKAVFSLFS-----LVEKHGIRPDENTFIGLLCGCTHGGFVNEGRQFFNNM 443
Query: 352 IDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQ 411
+ + P+ HY CM +L A L EA +++ MP M +++W +LL C+
Sbjct: 444 KRVFSLTPSIEHYGCMVDLLGRAGLLNEAHQLINNMP-----MKPNAVVWGALLGGCKLH 498
Query: 412 GAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRL 471
+ E++ K ++++P + Y L N+Y+ +WE+ ++R MK++++ ++ C
Sbjct: 499 KDTHLAEQVLKKLIELEPWNSGNYVQLSNIYSGNHRWEEAEKIRSTMKEQQIQKIRACSW 558
Query: 472 VDLKEVVEKLKVG 484
+++ +V + VG
Sbjct: 559 IEIDGIVHEFLVG 571
>gi|359497567|ref|XP_002265980.2| PREDICTED: pentatricopeptide repeat-containing protein At4g16835,
mitochondrial-like, partial [Vitis vinifera]
Length = 599
Score = 224 bits (571), Expect = 9e-56, Method: Compositional matrix adjust.
Identities = 131/463 (28%), Positives = 241/463 (52%), Gaps = 20/463 (4%)
Query: 23 WTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNG 82
W L +S G +F I P F N ++ Y ++ + +F+ QM
Sbjct: 39 WNSMLAGYSNRRGKIKVARQLFDRIPEPDIFSYNIMLACYLHNADVESARLFFDQMP--- 95
Query: 83 FMPNSYTFVSLFGSCAKTGCVERG-GMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCA 141
+ ++ ++ ++ ++ G +++ + + ++N V + N++I+ Y G +D A
Sbjct: 96 -VKDTASWNTMISGFSQNGMMDQARELFLVMPVRNSVSW-----NAMISGYVESGDLDLA 149
Query: 142 RNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPG 201
+ +F R +++W ++++G ++ G + A + F+ MP +N+V+WN MI+GY ++
Sbjct: 150 KQLFEVAPVRSVVAWTAMITGFMKFGKIELAEKYFEEMPMKNLVTWNAMIAGYIENCQAE 209
Query: 202 CSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALI 261
LKLF+ M++SGFR N +++SVL C + G+ VH ++ + NI T+L+
Sbjct: 210 NGLKLFKRMVESGFRPNPSSLSSVLLGCSNLSALKLGKQVHQLICKSPVSWNITAGTSLL 269
Query: 262 DLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSI 321
+Y KC +E A ++F M +++V WNAMI G+ HG E+ + LF + + +
Sbjct: 270 SMYCKCGDLEDAWKLFLVMPQKDVVTWNAMISGYAQHGAGEKALYLFDKMRD-----EGM 324
Query: 322 SPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAE 381
PD ITF+ V+ AC A + G +YF M+ Y ++ HY C+ +L EA
Sbjct: 325 KPDWITFVAVLSACNHAGFVDLGIEYFNSMVRDYGVEAKPDHYTCVVDLLGRGGKLVEAV 384
Query: 382 EILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNV 441
++++KMP S ++ +LL CR + + E AK+ +++DP+ + Y L NV
Sbjct: 385 DLIKKMP-----FKPHSAIFGTLLGACRIHKNLELAEFAAKNLLNLDPESAAGYVQLANV 439
Query: 442 YAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLKEVVEKLKVG 484
YA +W+ VA VR MK ++ + PG +++K VV + + G
Sbjct: 440 YAAMNRWDHVAMVRRSMKDNKVIKTPGYSWIEVKSVVHEFRSG 482
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 77/313 (24%), Positives = 142/313 (45%), Gaps = 38/313 (12%)
Query: 126 NSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHV-RSGDMSAAHELFDIMPERNV 184
N +I + G ++ A +F M+ + ++WNS+++G+ R G + A +LFD +PE ++
Sbjct: 9 NRVITNHIRSGDLNSALRVFESMTVKTTVTWNSMLAGYSNRRGKIKVARQLFDRIPEPDI 68
Query: 185 VSWNIMISGYSKSGNPGCSLKLFREM----------MKSGFRGN---DKTMASVLTACGR 231
S+NIM++ Y + + + F +M M SGF N D+ L R
Sbjct: 69 FSYNIMLACYLHNADVESARLFFDQMPVKDTASWNTMISGFSQNGMMDQARELFLVMPVR 128
Query: 232 SARFNEGRSVHGYTVRTSLK-----------PNIILDTALIDLYSKCQKVEVAQRVFDSM 280
++ + + GY L +++ TA+I + K K+E+A++ F+ M
Sbjct: 129 NS-VSWNAMISGYVESGDLDLAKQLFEVAPVRSVVAWTAMITGFMKFGKIELAEKYFEEM 187
Query: 281 ADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAEL 340
+NLV WNAMI G+ + + E G+KLF +V P+ + V+ C
Sbjct: 188 PMKNLVTWNAMIAGYIENCQAENGLKLFKRMVE-----SGFRPNPSSLSSVLLGCSNLSA 242
Query: 341 LTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIM 400
L G++ Q+I + N + ++Y E+A ++ MP+ + +
Sbjct: 243 LKLGKQ-VHQLICKSPVSWNITAGTSLLSMYCKCGDLEDAWKLFLVMPQK------DVVT 295
Query: 401 WVSLLSLCRFQGA 413
W +++S GA
Sbjct: 296 WNAMISGYAQHGA 308
>gi|296081589|emb|CBI20594.3| unnamed protein product [Vitis vinifera]
Length = 572
Score = 224 bits (571), Expect = 9e-56, Method: Compositional matrix adjust.
Identities = 139/490 (28%), Positives = 238/490 (48%), Gaps = 45/490 (9%)
Query: 1 MKQLLQIQAHLITSGL---FFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNA 57
M Q+LQIQA LITS + + + + L+ AD + L+F + +P F NA
Sbjct: 1 MAQVLQIQAQLITSPIPSSVVDPNLIAVKLIGACADHANVRQAALIFAHLASPNIFAHNA 60
Query: 58 VIKAYSNSCVPDQGVVFYLQMIK--NGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALK 115
+KA + + + F+ + N P+ +TF S+ +CA V G H + K
Sbjct: 61 TLKALAQNSHWFHAIQFFNHQVSSPNAPNPDEFTFTSVLKACAGLAHVVNGQKIHAMVTK 120
Query: 116 NGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHEL 175
G + L V NSLI+MY G + AR++F +M RD
Sbjct: 121 QGFESNLFVRNSLIDMYFKAGYLLLARHLFDEMFVRD----------------------- 157
Query: 176 FDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMK-SGFRGNDKTMASVLTACGRSAR 234
RNVV WN MI+GY+++ ++++FR M + G ND T+ SVL AC
Sbjct: 158 ------RNVVCWNAMIAGYAQNEKYSDAIEVFRMMQQFGGVVPNDVTLVSVLPACAHLGA 211
Query: 235 FNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILG 294
+ G+ + G+ R + + L AL D+Y+KC + A+RVF+ M +R+++ W+ +I G
Sbjct: 212 LDLGKWIDGFISRREMALGLFLGNALADMYAKCGCITEARRVFNKMEERDVISWSIIICG 271
Query: 295 HCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDF 354
++G +E F +++ P+++ F+G++ AC A L+ +G F M
Sbjct: 272 LAMYGHADEAFGCFYEMLD-----CGEKPNDVVFMGLLTACTHAGLVKKGLNCFNTMDKE 326
Query: 355 YKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAV 414
Y + P HY C+ +L + A ++AE+++ MP M I+W +LL CR
Sbjct: 327 YGVSPKVEHYGCVVDLLSRAGELDKAEDMISSMP-----MKPNVIIWGALLGGCRIYRDS 381
Query: 415 AMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDL 474
+R+ + +++D Y +L NVY+ G+ +D A+ R M++ + + PGC +++
Sbjct: 382 GRGQRVVQHILELDSDHSGSYVYLANVYSSMGRLDDAAKCRLRMRENGVLKTPGCSWIEV 441
Query: 475 KEVVEKLKVG 484
V + +G
Sbjct: 442 DNTVHEFFMG 451
>gi|297745420|emb|CBI40500.3| unnamed protein product [Vitis vinifera]
Length = 1133
Score = 224 bits (571), Expect = 9e-56, Method: Compositional matrix adjust.
Identities = 132/421 (31%), Positives = 214/421 (50%), Gaps = 15/421 (3%)
Query: 43 VFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLF-GSCAKTG 101
VF + NP N I S +GV + +M + + T V + S ++ G
Sbjct: 580 VFHEMPNPEALLWNEAIILNLQSEKLQKGVELFRKMQFSFLKAETATIVRVLQASISELG 639
Query: 102 CVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVS 161
+ G HG L+NG D ++ V SLI+MY ++ A+ +F M R++ +WNS+VS
Sbjct: 640 FLNMGKETHGYVLRNGFDCDVYVGTSLIDMYVKNHSLTSAQAVFDNMKNRNIFAWNSLVS 699
Query: 162 GHVRSGDMSAAHELFDIMPER----NVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRG 217
G+ G A L + M + ++V+WN MISGY+ G +L F +M + G
Sbjct: 700 GYSFKGMFEDALRLLNQMEKEGIKPDLVTWNGMISGYAMWGCGKEALAFFAQMQQEGVMP 759
Query: 218 NDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVF 277
N ++ +L AC + +G+ +H ++R ++ + TALID+YSK ++ A +VF
Sbjct: 760 NSASITCLLRACASLSLLQKGKEIHCLSIRNGFIEDVFVATALIDMYSKSSSLKNAHKVF 819
Query: 278 DSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVR 337
+ ++ L WN MI+G I G +E I +F + V PD ITF ++ AC
Sbjct: 820 RRIQNKTLASWNCMIMGFAIFGLGKEAISVFNEMQKVGVG-----PDAITFTALLSACKN 874
Query: 338 AELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFE 397
+ L+ EG KYF MI Y+I P HY CM +L A +EA +++ MP D
Sbjct: 875 SGLIGEGWKYFDSMITDYRIVPRLEHYCCMVDLLGRAGYLDEAWDLIHTMPLKPD----- 929
Query: 398 SIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVREL 457
+ +W +LL CR + E AK+ ++P + + Y ++N+Y++ +WED+ +REL
Sbjct: 930 ATIWGALLGSCRIHKNLKFAETAAKNLFKLEPNNSANYILMMNLYSIFNRWEDMDHLREL 989
Query: 458 M 458
M
Sbjct: 990 M 990
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 77/305 (25%), Positives = 129/305 (42%), Gaps = 40/305 (13%)
Query: 81 NGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYG-CFGAMD 139
G + +S + +C + + G HG +K G D ++ + +L+N YG C+G
Sbjct: 517 KGVVFDSEVYSVALKTCTRVMDIWLGMEIHGCLIKRGFDLDVYLRCALMNFYGRCWG--- 573
Query: 140 CARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGN 199
+ A+++F MP + WN I +S
Sbjct: 574 -----------------------------LEKANQVFHEMPNPEALLWNEAIILNLQSEK 604
Query: 200 PGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARF-NEGRSVHGYTVRTSLKPNIILDT 258
++LFR+M S + T+ VL A F N G+ HGY +R ++ + T
Sbjct: 605 LQKGVELFRKMQFSFLKAETATIVRVLQASISELGFLNMGKETHGYVLRNGFDCDVYVGT 664
Query: 259 ALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAG 318
+LID+Y K + AQ VFD+M +RN+ WN+++ G+ G E+ ++L +
Sbjct: 665 SLIDMYVKNHSLTSAQAVFDNMKNRNIFAWNSLVSGYSFKGMFEDALRLLNQM-----EK 719
Query: 319 GSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTE 378
I PD +T+ G+I E +F QM + PN A C+ A L +
Sbjct: 720 EGIKPDLVTWNGMISGYAMWGCGKEALAFFAQMQQ-EGVMPNSASITCLLRACASLSLLQ 778
Query: 379 EAEEI 383
+ +EI
Sbjct: 779 KGKEI 783
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 38/156 (24%), Positives = 77/156 (49%), Gaps = 1/156 (0%)
Query: 157 NSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGY-SKSGNPGCSLKLFREMMKSGF 215
+++S ++ GD +A +F + RN + WN + + S +G+ L++F+E+ G
Sbjct: 460 KNLISSYLGFGDFWSAAMVFYVGLPRNYLKWNSFVEEFKSSAGSLHIVLEVFKELHGKGV 519
Query: 216 RGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQR 275
+ + + L C R G +HG ++ ++ L AL++ Y +C +E A +
Sbjct: 520 VFDSEVYSVALKTCTRVMDIWLGMEIHGCLIKRGFDLDVYLRCALMNFYGRCWGLEKANQ 579
Query: 276 VFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTAL 311
VF M + + WN I+ + K ++G++LF +
Sbjct: 580 VFHEMPNPEALLWNEAIILNLQSEKLQKGVELFRKM 615
>gi|255586261|ref|XP_002533783.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223526284|gb|EEF28596.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 672
Score = 224 bits (571), Expect = 9e-56, Method: Compositional matrix adjust.
Identities = 122/437 (27%), Positives = 219/437 (50%), Gaps = 41/437 (9%)
Query: 43 VFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGC 102
+FK N A+I Y + + + + + +++ PN+ T S+ +CA
Sbjct: 231 IFKQSTNVDIVVCTAIISGYVLNGLNNDALEIFRWLLEEKMSPNAVTLASVLPACAGLAT 290
Query: 103 VERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSG 162
+ G H LK+G+D V +++++MY
Sbjct: 291 LNLGKELHANILKHGLDERRHVGSAIMDMYA----------------------------- 321
Query: 163 HVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTM 222
+ G + A+++F MPE++ V WN +I+ S++G P ++ LFR+M + G + ++
Sbjct: 322 --KCGRLDLAYQIFRRMPEKDAVCWNAIITNCSQNGKPQEAIDLFRQMGREGLSYDCVSI 379
Query: 223 ASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMAD 282
++ L+AC + G+++H + ++ + + ++ALID+Y KC + VA+ VFD M +
Sbjct: 380 SAALSACANLPALHHGKAIHSFMIKGAFDSEVFAESALIDMYGKCGNLSVARCVFDMMRE 439
Query: 283 RNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLT 342
+N V WN++I + HG E + LF ++ I PD +TF+ ++ AC A +
Sbjct: 440 KNEVSWNSIIAAYGSHGHLEVSLALFHKMLE-----DGIQPDHVTFLTILSACGHAGQVD 494
Query: 343 EGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWV 402
+G +YFR M + Y I HY C+ +L+ A EA E ++ MP D+ +W
Sbjct: 495 KGIQYFRCMTEEYGIPARMEHYACIVDLFGRAGRLNEAFETIKNMPFSPDDG-----VWG 549
Query: 403 SLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRR 462
+LL CR G V + E ++ +D+DP++ Y L NV+A AGQW V ++R LMKKR
Sbjct: 550 TLLGACRVHGNVELAEVASRCLLDLDPENSGCYVLLSNVHADAGQWGSVRKIRSLMKKRG 609
Query: 463 MGRMPGCRLVDLKEVVE 479
+ ++PG +++ +
Sbjct: 610 VQKVPGYSWIEVNKTTH 626
Score = 144 bits (363), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 102/396 (25%), Positives = 181/396 (45%), Gaps = 43/396 (10%)
Query: 17 FFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYL 76
F + F +L+K A+ G + +F + N N ++ + P+ V +
Sbjct: 3 FNVDEFVGSSLIKLYAENGCIEDARRLFDKMPNKDCVLWNVMLNGFVKCGEPNSAVKVFE 62
Query: 77 QMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFG 136
M PNS TF S+ CA E G HGL + G F+ V N+L+ MY FG
Sbjct: 63 DMRNCQTKPNSITFASVLSICASEALSEFGNQLHGLVISCGFHFDPLVANALVAMYSKFG 122
Query: 137 AMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSK 196
+S A +LF+ MP+ NVV+WN MI+G+ +
Sbjct: 123 -------------------------------QLSDALKLFNTMPDTNVVTWNGMIAGFVQ 151
Query: 197 SGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIIL 256
+G + LF EM+ +G + T AS L + SA +G+ +HGY +R + ++ L
Sbjct: 152 NGFMDEASLLFSEMISAGVSPDSITFASFLPSVTESASLKQGKEIHGYILRHGIALDVFL 211
Query: 257 DTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTV 316
+ALID+Y KC+ V +A ++F + ++V A+I G+ ++G + +++F L+
Sbjct: 212 KSALIDIYFKCRDVGMACKIFKQSTNVDIVVCTAIISGYVLNGLNNDALEIFRWLLE--- 268
Query: 317 AGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAEL 376
+SP+ +T V+ AC L G++ ++ + + + ++YA
Sbjct: 269 --EKMSPNAVTLASVLPACAGLATLNLGKELHANILK-HGLDERRHVGSAIMDMYAKCGR 325
Query: 377 TEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQG 412
+ A +I R+MPE +++ W ++++ C G
Sbjct: 326 LDLAYQIFRRMPEK------DAVCWNAIITNCSQNG 355
Score = 122 bits (306), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 82/347 (23%), Positives = 158/347 (45%), Gaps = 37/347 (10%)
Query: 6 QIQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSNS 65
Q+ +I+ G F+ L+ + FG + +F + + N +I + +
Sbjct: 94 QLHGLVISCGFHFD-PLVANALVAMYSKFGQLSDALKLFNTMPDTNVVTWNGMIAGFVQN 152
Query: 66 CVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVM 125
D+ + + +MI G P+S TF S S ++ +++G HG L++G+ ++ +
Sbjct: 153 GFMDEASLLFSEMISAGVSPDSITFASFLPSVTESASLKQGKEIHGYILRHGIALDVFLK 212
Query: 126 NSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVV 185
++LI++Y + D+ A ++F ++V
Sbjct: 213 SALIDIY-------------------------------FKCRDVGMACKIFKQSTNVDIV 241
Query: 186 SWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYT 245
+ISGY +G +L++FR +++ N T+ASVL AC A N G+ +H
Sbjct: 242 VCTAIISGYVLNGLNNDALEIFRWLLEEKMSPNAVTLASVLPACAGLATLNLGKELHANI 301
Query: 246 VRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGI 305
++ L + +A++D+Y+KC ++++A ++F M +++ VCWNA+I +GKP+E I
Sbjct: 302 LKHGLDERRHVGSAIMDMYAKCGRLDLAYQIFRRMPEKDAVCWNAIITNCSQNGKPQEAI 361
Query: 306 KLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMI 352
LF + +S D ++ + AC L G+ MI
Sbjct: 362 DLFRQM-----GREGLSYDCVSISAALSACANLPALHHGKAIHSFMI 403
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 53/212 (25%), Positives = 95/212 (44%), Gaps = 5/212 (2%)
Query: 32 ADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFV 91
A G D +F+ + C NA+I S + P + + + QM + G + +
Sbjct: 321 AKCGRLDLAYQIFRRMPEKDAVCWNAIITNCSQNGKPQEAIDLFRQMGREGLSYDCVSIS 380
Query: 92 SLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPR 151
+ +CA + G H +K D E+ ++LI+MYG G + AR +F M +
Sbjct: 381 AALSACANLPALHHGKAIHSFMIKGAFDSEVFAESALIDMYGKCGNLSVARCVFDMMREK 440
Query: 152 DLISWNSIVSGHVRSGDMSAAHELFDIMPERNV----VSWNIMISGYSKSGNPGCSLKLF 207
+ +SWNSI++ + G + + LF M E + V++ ++S +G ++ F
Sbjct: 441 NEVSWNSIIAAYGSHGHLEVSLALFHKMLEDGIQPDHVTFLTILSACGHAGQVDKGIQYF 500
Query: 208 REMMKS-GFRGNDKTMASVLTACGRSARFNEG 238
R M + G + A ++ GR+ R NE
Sbjct: 501 RCMTEEYGIPARMEHYACIVDLFGRAGRLNEA 532
Score = 42.7 bits (99), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 47/219 (21%), Positives = 98/219 (44%), Gaps = 14/219 (6%)
Query: 11 LITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSNSCVPDQ 70
+ G F + F L+ G+ VF + N++I AY + +
Sbjct: 401 FMIKGAFDSEVFAESALIDMYGKCGNLSVARCVFDMMREKNEVSWNSIIAAYGSHGHLEV 460
Query: 71 GVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERG-GMCHGLALKNGVDFELPVMNSLI 129
+ + +M+++G P+ TF+++ +C G V++G + + G+ + ++
Sbjct: 461 SLALFHKMLEDGIQPDHVTFLTILSACGHAGQVDKGIQYFRCMTEEYGIPARMEHYACIV 520
Query: 130 NMYGCFGAMDCARNMFVQM--SPRDLISWNSI-----VSGHVRSGDMSAAHELFDIMPER 182
+++G G ++ A M SP D + W ++ V G+V ++ A+ L D+ PE
Sbjct: 521 DLFGRAGRLNEAFETIKNMPFSPDDGV-WGTLLGACRVHGNVELAEV-ASRCLLDLDPE- 577
Query: 183 NVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKT 221
N + ++ + ++ +G G S++ R +MK RG K
Sbjct: 578 NSGCYVLLSNVHADAGQWG-SVRKIRSLMKK--RGVQKV 613
>gi|297837569|ref|XP_002886666.1| hypothetical protein ARALYDRAFT_475343 [Arabidopsis lyrata subsp.
lyrata]
gi|297332507|gb|EFH62925.1| hypothetical protein ARALYDRAFT_475343 [Arabidopsis lyrata subsp.
lyrata]
Length = 608
Score = 224 bits (571), Expect = 9e-56, Method: Compositional matrix adjust.
Identities = 148/499 (29%), Positives = 244/499 (48%), Gaps = 55/499 (11%)
Query: 1 MKQLLQIQAHLITSGLFFNNS--FWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAV 58
M QL Q+ A + + + F +L+ S+ F +Y VF I N +F N +
Sbjct: 42 MSQLKQLHAFTLRTTYPDEPATLFLYGKILQLSSSFSDVNYAFRVFDSIENHSSFMWNTL 101
Query: 59 IKAYSNSCV-PDQGVVFYLQMIKNG-FMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKN 116
I+A ++ ++ + Y +M++ G P+ +TF + +CA + G H +K+
Sbjct: 102 IRACAHDVSRKEEAFMLYRKMLERGESAPDKHTFPFVLKACAYIFGLSEGKQVHCQIVKH 161
Query: 117 GVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELF 176
G ++ V N LI+ YG G +D AR ++F
Sbjct: 162 GFSGDVYVNNGLIHFYGSCGCLDLAR-------------------------------KVF 190
Query: 177 DIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFN 236
D MPER++VSWN MI + G +L+LFR+M KS F + TM SVL+AC +
Sbjct: 191 DEMPERSLVSWNSMIDALVRVGEYDSALQLFRDMQKS-FEPDGYTMQSVLSACAGLGSLS 249
Query: 237 EGRSVHGYTVR---TSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMIL 293
G H + +R + ++++ +LI++Y KC + +A++VF M +L WNAMIL
Sbjct: 250 LGTWSHVFLLRNCDVDVAMDVLIKNSLIEMYCKCGSLRMAEQVFQGMRKHDLASWNAMIL 309
Query: 294 GHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMID 353
G HGK EE + F +V G ++ P+ +TF+ ++ AC ++ +GR+YF M+
Sbjct: 310 GFATHGKAEEAMNCFDCMVK---EGKNVKPNSVTFVALLIACNHRGMVNKGRQYFDMMVR 366
Query: 354 FYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGA 413
Y I+P HY C+ +L A A EA +++ MP M ++++W SLL C +GA
Sbjct: 367 EYGIEPALEHYGCIIDLLARAGYITEAIDMVMSMP-----MKPDAVIWRSLLDACCKKGA 421
Query: 414 -VAMVERLAKSFVDMDPQDFSR-------YQFLLNVYAVAGQWEDVARVRELMKKRRMGR 465
V + E +A++ + + S Y L VYA A +W DV VR+LM + +
Sbjct: 422 SVELSEEIARNIIGTMEDNQSSNSNCSGAYVLLSRVYASANRWNDVGIVRKLMSDHGIRK 481
Query: 466 MPGCRLVDLKEVVEKLKVG 484
PGC +++ + + G
Sbjct: 482 EPGCSSIEINGISNEFFAG 500
Score = 52.4 bits (124), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 51/211 (24%), Positives = 95/211 (45%), Gaps = 25/211 (11%)
Query: 225 VLTACGRSARFNEGRSVHGYTVRTSLK---PNIILDTALIDLYSKCQKVEVAQRVFDSMA 281
+L+ + ++ + +H +T+RT+ + L ++ L S V A RVFDS+
Sbjct: 32 ILSLAETCSDMSQLKQLHAFTLRTTYPDEPATLFLYGKILQLSSSFSDVNYAFRVFDSIE 91
Query: 282 DRNLVCWNAMILGHCIH--GKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAE 339
+ + WN +I C H + EE L+ ++ G +PD+ TF V+ AC
Sbjct: 92 NHSSFMWNTLIRA-CAHDVSRKEEAFMLYRKMLER----GESAPDKHTFPFVLKACAYIF 146
Query: 340 LLTEGRKYFRQMI------DFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDN 393
L+EG++ Q++ D Y + H+ Y + A ++ +MPE
Sbjct: 147 GLSEGKQVHCQIVKHGFSGDVY-VNNGLIHF------YGSCGCLDLARKVFDEMPE-RSL 198
Query: 394 MSFESIMWVSLLSLCRFQGAVAMVERLAKSF 424
+S+ S M +L+ + + A+ + + KSF
Sbjct: 199 VSWNS-MIDALVRVGEYDSALQLFRDMQKSF 228
>gi|449451271|ref|XP_004143385.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g11460-like [Cucumis sativus]
Length = 623
Score = 224 bits (571), Expect = 9e-56, Method: Compositional matrix adjust.
Identities = 131/433 (30%), Positives = 213/433 (49%), Gaps = 41/433 (9%)
Query: 52 TFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHG 111
T C NA++ Y ++ + V+ + QM + G NS T + L +C +E G H
Sbjct: 117 TVCYNALVSGYVSNSKCSEAVLLFRQMNEEGVPVNSVTLLGLIPACVSPINLELGSSLHC 176
Query: 112 LALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSA 171
LK G D ++ V+N I MY M C G ++
Sbjct: 177 STLKYGFDSDVSVVNCFITMY-----MKC--------------------------GSVNY 205
Query: 172 AHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGR 231
A +LFD MP + ++SWN M+SGY+++G L+L+R M +G + T+ VL++C
Sbjct: 206 AQKLFDEMPVKGLISWNAMVSGYAQNGLATNVLELYRNMDMNGVHPDPVTLVGVLSSCAN 265
Query: 232 SARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAM 291
+ G V + N L+ ALI++Y++C + AQ VFD M +R LV W A+
Sbjct: 266 LGAQSVGHEVEFKIQASGFTSNPFLNNALINMYARCGNLTKAQAVFDGMPERTLVSWTAI 325
Query: 292 ILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQM 351
I G+ +HG E ++LF ++ I PD F+ V+ AC A L +G +YF+ M
Sbjct: 326 IGGYGMHGHGEIAVQLFKEMIR-----SGIEPDGTAFVCVLSACSHAGLTDQGLEYFKMM 380
Query: 352 IDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQ 411
Y+++P HY CM +L A +EA+ ++ MP D +W +LL C+
Sbjct: 381 KRNYQLEPGPEHYSCMVDLLGRAGRLKEAQTLIESMPIKPD-----GAVWGALLGACKIH 435
Query: 412 GAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRL 471
V + E + ++++P++ Y L N+Y+ A + V R+R +MK++++ + PGC
Sbjct: 436 KNVELAELAFERVIELEPENIGYYVLLSNIYSNANNSKGVLRIRIMMKEKKLKKDPGCSY 495
Query: 472 VDLKEVVEKLKVG 484
V+LK V VG
Sbjct: 496 VELKGRVHPFIVG 508
Score = 79.0 bits (193), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 68/271 (25%), Positives = 112/271 (41%), Gaps = 35/271 (12%)
Query: 35 GSPDYTVLVFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLF 94
GS +Y +F + G NA++ Y+ + + + Y M NG P+ T V +
Sbjct: 201 GSVNYAQKLFDEMPVKGLISWNAMVSGYAQNGLATNVLELYRNMDMNGVHPDPVTLVGVL 260
Query: 95 GSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLI 154
SCA G G +G + N+LINMY G + A+ +F M R L+
Sbjct: 261 SSCANLGAQSVGHEVEFKIQASGFTSNPFLNNALINMYARCGNLTKAQAVFDGMPERTLV 320
Query: 155 SWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSG 214
SW +I I GY G+ +++LF+EM++SG
Sbjct: 321 SWTAI-------------------------------IGGYGMHGHGEIAVQLFKEMIRSG 349
Query: 215 FRGNDKTMASVLTACGRSARFNEGRSVHGYTVRT-SLKPNIILDTALIDLYSKCQKVEVA 273
+ VL+AC + ++G R L+P + ++DL + +++ A
Sbjct: 350 IEPDGTAFVCVLSACSHAGLTDQGLEYFKMMKRNYQLEPGPEHYSCMVDLLGRAGRLKEA 409
Query: 274 QRVFDSMADR-NLVCWNAMILGHC-IHGKPE 302
Q + +SM + + W A+ LG C IH E
Sbjct: 410 QTLIESMPIKPDGAVWGAL-LGACKIHKNVE 439
Score = 58.5 bits (140), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 51/204 (25%), Positives = 86/204 (42%), Gaps = 8/204 (3%)
Query: 187 WNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTV 246
WN + +K +L L+ +M++ G R N T L +C + G HG
Sbjct: 17 WNTQLRELAKRCQFLQALSLYPQMLRHGDRPNAFTFPFALKSCAALSLPILGSQFHGQIT 76
Query: 247 RTSLKPNIILDTALIDLYSKCQKVEVAQRVF-DSMADRNL-VCWNAMILGHCIHGKPEEG 304
+ + T LI +Y K V+ A++VF ++ R L VC+NA++ G+ + K E
Sbjct: 77 KVGCVFEPFVQTGLISMYCKGSLVDNARKVFEENFHSRKLTVCYNALVSGYVSNSKCSEA 136
Query: 305 IKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHY 364
+ LF + V S +T +G+I ACV L G + Y + +
Sbjct: 137 VLLFRQMNEEGVPVNS-----VTLLGLIPACVSPINLELGSSLHCSTLK-YGFDSDVSVV 190
Query: 365 WCMANLYAGAELTEEAEEILRKMP 388
C +Y A+++ +MP
Sbjct: 191 NCFITMYMKCGSVNYAQKLFDEMP 214
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.324 0.137 0.425
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,162,528,229
Number of Sequences: 23463169
Number of extensions: 332839142
Number of successful extensions: 997481
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 8256
Number of HSP's successfully gapped in prelim test: 2520
Number of HSP's that attempted gapping in prelim test: 852008
Number of HSP's gapped (non-prelim): 55225
length of query: 523
length of database: 8,064,228,071
effective HSP length: 147
effective length of query: 376
effective length of database: 8,910,109,524
effective search space: 3350201181024
effective search space used: 3350201181024
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 79 (35.0 bits)