BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 038200
(523 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3ZWB|A Chain A, Crystal Structure Of Rat Peroxisomal Multifunctional
Enzyme Type 1 (rpmfe1) Complexed With
2trans-hexenoyl-coa
pdb|3ZWB|B Chain B, Crystal Structure Of Rat Peroxisomal Multifunctional
Enzyme Type 1 (rpmfe1) Complexed With
2trans-hexenoyl-coa
Length = 742
Score = 35.8 bits (81), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 38/161 (23%), Positives = 69/161 (42%), Gaps = 35/161 (21%)
Query: 217 GNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQ-- 274
G+D T+ +++ CG + F G +HG++ T P + L + L+D + QK +A
Sbjct: 60 GSDHTVKAIVI-CGANGNFCAGADIHGFSAFT---PGLALGS-LVDEIQRYQKPVLAAIQ 114
Query: 275 ----------------RVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVA- 317
R+ ++ A L IL G +L +V VA
Sbjct: 115 GVALGGGLELALGCHYRIANAKARVGLPAVTLGILPGA------RGTQLLPRVVGVPVAL 168
Query: 318 -----GGSISPDEITFIGVICACVRAELLTEGRKYFRQMID 353
G +S DE +G++ A V+++ + E K+ +++ID
Sbjct: 169 DLITSGKYLSADEALRLGILDAVVKSDPVEEAIKFAQKIID 209
>pdb|3ZW8|A Chain A, Crystal Structure Of Rat Peroxisomal Multifunctional
Enzyme Type 1 (rpmfe1) In Apo Form
pdb|3ZW8|B Chain B, Crystal Structure Of Rat Peroxisomal Multifunctional
Enzyme Type 1 (rpmfe1) In Apo Form
pdb|3ZW9|A Chain A, Crystal Structure Of Rat Peroxisomal Multifunctional
Enzyme Type 1 (rpmfe1) Complexed With
(2s,3s)-3-hydroxy-2- Methylbutanoyl-coa
pdb|3ZW9|B Chain B, Crystal Structure Of Rat Peroxisomal Multifunctional
Enzyme Type 1 (rpmfe1) Complexed With
(2s,3s)-3-hydroxy-2- Methylbutanoyl-coa
pdb|3ZWA|A Chain A, Crystal Structure Of Rat Peroxisomal Multifunctional
Enzyme Type 1 (rpmfe1) Complexed With
3s-hydroxy-hexanoyl-coa
pdb|3ZWA|B Chain B, Crystal Structure Of Rat Peroxisomal Multifunctional
Enzyme Type 1 (rpmfe1) Complexed With
3s-hydroxy-hexanoyl-coa
pdb|3ZWC|A Chain A, Crystal Structure Of Rat Peroxisomal Multifunctional
Enzyme Type 1 (rpmfe1) Complexed With
3s-hydroxy-decanoyl-coa
pdb|3ZWC|B Chain B, Crystal Structure Of Rat Peroxisomal Multifunctional
Enzyme Type 1 (rpmfe1) Complexed With
3s-hydroxy-decanoyl-coa
Length = 742
Score = 35.0 bits (79), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 39/155 (25%), Positives = 69/155 (44%), Gaps = 23/155 (14%)
Query: 217 GNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVA--Q 274
G+D T+ +++ CG + F G +HG++ T P + L + L+D + QK +A Q
Sbjct: 60 GSDHTVKAIVI-CGANGNFCAGADIHGFSAFT---PGLALGS-LVDEIQRYQKPVLAAIQ 114
Query: 275 RVFDSMADRNLV-CWNAMILGHCIHGKPE---------EGIKLFTALVNGTVA------G 318
V + C + G PE G +L +V VA G
Sbjct: 115 GVALGGGLELALGCHYRIANAKARVGLPEVTLGILPGARGTQLLPRVVGVPVALDLITSG 174
Query: 319 GSISPDEITFIGVICACVRAELLTEGRKYFRQMID 353
+S DE +G++ A V+++ + E K+ +++ID
Sbjct: 175 KYLSADEALRLGILDAVVKSDPVEEAIKFAQKIID 209
>pdb|2X58|A Chain A, The Crystal Structure Of Mfe1 Liganded With Coa
pdb|2X58|B Chain B, The Crystal Structure Of Mfe1 Liganded With Coa
Length = 727
Score = 35.0 bits (79), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 39/155 (25%), Positives = 69/155 (44%), Gaps = 23/155 (14%)
Query: 217 GNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVA--Q 274
G+D T+ +++ CG + F G +HG++ T P + L + L+D + QK +A Q
Sbjct: 45 GSDHTVKAIVI-CGANGNFCAGADIHGFSAFT---PGLALGS-LVDEIQRYQKPVLAAIQ 99
Query: 275 RVFDSMADRNLV-CWNAMILGHCIHGKPE---------EGIKLFTALVNGTVA------G 318
V + C + G PE G +L +V VA G
Sbjct: 100 GVALGGGLELALGCHYRIANAKARVGLPEVTLGILPGARGTQLLPRVVGVPVALDLITSG 159
Query: 319 GSISPDEITFIGVICACVRAELLTEGRKYFRQMID 353
+S DE +G++ A V+++ + E K+ +++ID
Sbjct: 160 KYLSADEALRLGILDAVVKSDPVEEAIKFAQKIID 194
>pdb|2V9E|A Chain A, L-rhamnulose-1-phosphate Aldolase From Escherichia Coli (
Mutant E192a-k248w-a273s)
pdb|2V9E|B Chain B, L-rhamnulose-1-phosphate Aldolase From Escherichia Coli (
Mutant E192a-k248w-a273s)
pdb|2V9F|A Chain A, L-Rhamnulose-1-Phosphate Aldolase From Escherichia Coli (
Mutant E192a-K248w-A273s)
Length = 274
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
Query: 405 LSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMG 464
L L F G L ++F +D + S Q L+ VY++ G W+ ++R + +R G
Sbjct: 206 LVLWPFHGVFGSGPTLDETFGLIDTAEKSA-QVLVKVYSMGGMWQTISREELIALGKRFG 264
Query: 465 RMP 467
P
Sbjct: 265 VTP 267
>pdb|2V9I|A Chain A, L-Rhamnulose-1-Phosphate Aldolase From Escherichia Coli (
Mutant E192a-K248w-L274stop)
pdb|2V9I|B Chain B, L-Rhamnulose-1-Phosphate Aldolase From Escherichia Coli (
Mutant E192a-K248w-L274stop)
Length = 273
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
Query: 405 LSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMG 464
L L F G L ++F +D + S Q L+ VY++ G W+ ++R + +R G
Sbjct: 206 LVLWPFHGVFGSGPTLDETFGLIDTAEKSA-QVLVKVYSMGGMWQTISREELIALGKRFG 264
Query: 465 RMP 467
P
Sbjct: 265 VTP 267
>pdb|2PN5|A Chain A, Crystal Structure Of Tep1r
Length = 1325
Score = 30.0 bits (66), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 34/85 (40%), Gaps = 9/85 (10%)
Query: 281 ADRNLVCWNAM---------ILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGV 331
AD+N WN +L + K +GI + LVN GS + TF+G+
Sbjct: 1036 ADKNERFWNTTNPIETTAYALLSFVMAEKYTDGIPVMNWLVNQRYVTGSFPSTQDTFVGL 1095
Query: 332 ICACVRAELLTEGRKYFRQMIDFYK 356
AE ++ R + + + K
Sbjct: 1096 KALTKMAEKISPSRNDYTVQLKYKK 1120
>pdb|4D94|A Chain A, Crystal Structure Of Tep1r
Length = 1325
Score = 30.0 bits (66), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 34/85 (40%), Gaps = 9/85 (10%)
Query: 281 ADRNLVCWNAM---------ILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGV 331
AD+N WN +L + K +GI + LVN GS + TF+G+
Sbjct: 1036 ADKNERFWNTTNPIETTAYALLSFVMAEKYTDGIPVMNWLVNQRYVTGSFPSTQDTFVGL 1095
Query: 332 ICACVRAELLTEGRKYFRQMIDFYK 356
AE ++ R + + + K
Sbjct: 1096 KALTKMAEKISPSRNDYTVQLKYKK 1120
>pdb|1I3Z|A Chain A, Murine Eat2 Sh2 Domain In Complex With Slam Phosphopeptide
Length = 103
Score = 28.9 bits (63), Expect = 8.2, Method: Composition-based stats.
Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Query: 311 LVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAH 363
L+ G V G + D + G +C CV + L + FR+ +Y+I+ + AH
Sbjct: 19 LLKGGVDGNFLIRDSESVPGALCLCVSFKKLVYSYRIFREKHGYYRIETD-AH 70
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.136 0.428
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,307,848
Number of Sequences: 62578
Number of extensions: 606964
Number of successful extensions: 1548
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 1542
Number of HSP's gapped (non-prelim): 13
length of query: 523
length of database: 14,973,337
effective HSP length: 103
effective length of query: 420
effective length of database: 8,527,803
effective search space: 3581677260
effective search space used: 3581677260
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 54 (25.4 bits)