BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 038200
(523 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q0WVU0|PP278_ARATH Pentatricopeptide repeat-containing protein At3g51320
OS=Arabidopsis thaliana GN=At3g51320 PE=2 SV=1
Length = 530
Score = 545 bits (1404), Expect = e-154, Method: Compositional matrix adjust.
Identities = 248/484 (51%), Positives = 353/484 (72%), Gaps = 10/484 (2%)
Query: 1 MKQLLQIQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIK 60
+ L Q+ A LITSG F+++S W I LLK S+ FG YTV +++ I +C N V K
Sbjct: 35 ITHLFQVHARLITSGNFWDSS-WAIRLLKSSSRFGDSSYTVSIYRSIGK--LYCANPVFK 91
Query: 61 AYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDF 120
AY S P Q + FY +++ GF+P+SYTFVSL KT CV+ G MCHG A+K+G D
Sbjct: 92 AYLVSSSPKQALGFYFDILRFGFVPDSYTFVSLISCIEKTCCVDSGKMCHGQAIKHGCDQ 151
Query: 121 ELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMP 180
LPV NSL++MY C GA+D A+ +FV++ RD++SWNSI++G VR+GD+ AAH+LFD MP
Sbjct: 152 VLPVQNSLMHMYTCCGALDLAKKLFVEIPKRDIVSWNSIIAGMVRNGDVLAAHKLFDEMP 211
Query: 181 ERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRS 240
++N++SWNIMIS Y + NPG S+ LFREM+++GF+GN+ T+ +L ACGRSAR EGRS
Sbjct: 212 DKNIISWNIMISAYLGANNPGVSISLFREMVRAGFQGNESTLVLLLNACGRSARLKEGRS 271
Query: 241 VHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGK 300
VH +RT L ++++DTALID+Y KC++V +A+R+FDS++ RN V WN MIL HC+HG+
Sbjct: 272 VHASLIRTFLNSSVVIDTALIDMYGKCKEVGLARRIFDSLSIRNKVTWNVMILAHCLHGR 331
Query: 301 PEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPN 360
PE G++LF A++NG + PDE+TF+GV+C C RA L+++G+ Y+ M+D ++IKPN
Sbjct: 332 PEGGLELFEAMINGM-----LRPDEVTFVGVLCGCARAGLVSQGQSYYSLMVDEFQIKPN 386
Query: 361 FAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERL 420
F H WCMANLY+ A EEAEE L+ +P+ ++++ ES W +LLS RF G + E +
Sbjct: 387 FGHQWCMANLYSSAGFPEEAEEALKNLPD--EDVTPESTKWANLLSSSRFTGNPTLGESI 444
Query: 421 AKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLKEVVEK 480
AKS ++ DP ++ Y L+N+Y+V G+WEDV RVRE++K+R++GR+PGC LVDLKE+V
Sbjct: 445 AKSLIETDPLNYKYYHLLMNIYSVTGRWEDVNRVREMVKERKIGRIPGCGLVDLKEIVHG 504
Query: 481 LKVG 484
L++G
Sbjct: 505 LRLG 508
>sp|Q9SJG6|PP200_ARATH Pentatricopeptide repeat-containing protein At2g42920,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-E75 PE=2
SV=1
Length = 559
Score = 295 bits (755), Expect = 6e-79, Method: Compositional matrix adjust.
Identities = 169/487 (34%), Positives = 261/487 (53%), Gaps = 13/487 (2%)
Query: 1 MKQLLQIQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIK 60
M++L QI A LI +GL + + L A +Y LVF IN+ F N +I+
Sbjct: 38 MRELKQIHASLIKTGLISDTVTASRVLAFCCASPSDMNYAYLVFTRINHKNPFVWNTIIR 97
Query: 61 AYSNSCVPDQGVVFYLQMI--KNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGV 118
+S S P+ + ++ M+ P T+ S+F + + G G HG+ +K G+
Sbjct: 98 GFSRSSFPEMAISIFIDMLCSSPSVKPQRLTYPSVFKAYGRLGQARDGRQLHGMVIKEGL 157
Query: 119 DFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDI 178
+ + + N++++MY G + A +F+ M D+++WNS++ G + G + A LFD
Sbjct: 158 EDDSFIRNTMLHMYVTCGCLIEAWRIFLGMIGFDVVAWNSMIMGFAKCGLIDQAQNLFDE 217
Query: 179 MPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEG 238
MP+RN VSWN MISG+ ++G +L +FREM + + + TM S+L AC +G
Sbjct: 218 MPQRNGVSWNSMISGFVRNGRFKDALDMFREMQEKDVKPDGFTMVSLLNACAYLGASEQG 277
Query: 239 RSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIH 298
R +H Y VR + N I+ TALID+Y KC +E VF+ + L CWN+MILG +
Sbjct: 278 RWIHEYIVRNRFELNSIVVTALIDMYCKCGCIEEGLNVFECAPKKQLSCWNSMILGLANN 337
Query: 299 GKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIK 358
G E + LF+ L + PD ++FIGV+ AC + + ++FR M + Y I+
Sbjct: 338 GFEERAMDLFSELER-----SGLEPDSVSFIGVLTACAHSGEVHRADEFFRLMKEKYMIE 392
Query: 359 PNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVE 418
P+ HY M N+ GA L EEAE +++ MP + D +++W SLLS CR G V M +
Sbjct: 393 PSIKHYTLMVNVLGGAGLLEEAEALIKNMPVEED-----TVIWSSLLSACRKIGNVEMAK 447
Query: 419 RLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLK-EV 477
R AK +DP + Y L N YA G +E+ R LMK+R+M + GC +++ EV
Sbjct: 448 RAAKCLKKLDPDETCGYVLLSNAYASYGLFEEAVEQRLLMKERQMEKEVGCSSIEVDFEV 507
Query: 478 VEKLKVG 484
E + G
Sbjct: 508 HEFISCG 514
>sp|Q9FI80|PP425_ARATH Pentatricopeptide repeat-containing protein At5g48910
OS=Arabidopsis thaliana GN=PCMP-H38 PE=2 SV=1
Length = 646
Score = 293 bits (749), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 180/523 (34%), Positives = 275/523 (52%), Gaps = 39/523 (7%)
Query: 1 MKQLLQIQAHLITSGLFFNNSFWTINLLK-------HSADFGSPDYTVLVFKCINNPGTF 53
++ L QI A I SG ++ +L+ H D DY +F + F
Sbjct: 36 IRDLSQIHAVFIKSGQM-RDTLAAAEILRFCATSDLHHRDL---DYAHKIFNQMPQRNCF 91
Query: 54 CVNAVIKAYSNSCVPDQ--GVVFYLQMIKNGFM-PNSYTFVSLFGSCAKTGCVERGGMCH 110
N +I+ +S S + + +M+ + F+ PN +TF S+ +CAKTG ++ G H
Sbjct: 92 SWNTIIRGFSESDEDKALIAITLFYEMMSDEFVEPNRFTFPSVLKACAKTGKIQEGKQIH 151
Query: 111 GLALKNGVDFELPVMNSLINMYGCFGAMDCARNMF---------VQMSPR-----DLISW 156
GLALK G + VM++L+ MY G M AR +F V M+ R +++ W
Sbjct: 152 GLALKYGFGGDEFVMSNLVRMYVMCGFMKDARVLFYKNIIEKDMVVMTDRRKRDGEIVLW 211
Query: 157 NSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFR 216
N ++ G++R GD AA LFD M +R+VVSWN MISGYS +G ++++FREM K R
Sbjct: 212 NVMIDGYMRLGDCKAARMLFDKMRQRSVVSWNTMISGYSLNGFFKDAVEVFREMKKGDIR 271
Query: 217 GNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRV 276
N T+ SVL A R G +H Y + ++ + +L +ALID+YSKC +E A V
Sbjct: 272 PNYVTLVSVLPAISRLGSLELGEWLHLYAEDSGIRIDDVLGSALIDMYSKCGIIEKAIHV 331
Query: 277 FDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACV 336
F+ + N++ W+AMI G IHG+ + I F + V P ++ +I ++ AC
Sbjct: 332 FERLPRENVITWSAMINGFAIHGQAGDAIDCFCKMRQAGV-----RPSDVAYINLLTACS 386
Query: 337 RAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSF 396
L+ EGR+YF QM+ ++P HY CM +L + L +EAEE + MP D+
Sbjct: 387 HGGLVEEGRRYFSQMVSVDGLEPRIEHYGCMVDLLGRSGLLDEAEEFILNMPIKPDD--- 443
Query: 397 ESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRE 456
++W +LL CR QG V M +R+A +DM P D Y L N+YA G W +V+ +R
Sbjct: 444 --VIWKALLGACRMQGNVEMGKRVANILMDMVPHDSGAYVALSNMYASQGNWSEVSEMRL 501
Query: 457 LMKKRRMGRMPGCRLVDLKEVVEKLKVGHFWRGGMKEEVNKMM 499
MK++ + + PGC L+D+ V+ + V K E+N M+
Sbjct: 502 RMKEKDIRKDPGCSLIDIDGVLHEFVVEDDSHPKAK-EINSML 543
>sp|Q9SIL5|PP165_ARATH Pentatricopeptide repeat-containing protein At2g20540
OS=Arabidopsis thaliana GN=PCMP-E78 PE=2 SV=1
Length = 534
Score = 288 bits (736), Expect = 9e-77, Method: Compositional matrix adjust.
Identities = 159/487 (32%), Positives = 257/487 (52%), Gaps = 16/487 (3%)
Query: 6 QIQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSNS 65
+I A +I GL +SF ++ DY +F ++NP F N++I+AY+++
Sbjct: 28 KINASIIIHGLS-QSSFMVTKMVDFCDKIEDMDYATRLFNQVSNPNVFLYNSIIRAYTHN 86
Query: 66 CVPDQGVVFYLQMIKNGF-MPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPV 124
+ + Y Q+++ F +P+ +TF +F SCA G G HG K G F +
Sbjct: 87 SLYCDVIRIYKQLLRKSFELPDRFTFPFMFKSCASLGSCYLGKQVHGHLCKFGPRFHVVT 146
Query: 125 MNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNV 184
N+LI+MY F + A +F +M RD+ISWNS++SG+ R G M A LF +M ++ +
Sbjct: 147 ENALIDMYMKFDDLVDAHKVFDEMYERDVISWNSLLSGYARLGQMKKAKGLFHLMLDKTI 206
Query: 185 VSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGY 244
VSW MISGY+ G ++ FREM +G ++ ++ SVL +C + G+ +H Y
Sbjct: 207 VSWTAMISGYTGIGCYVEAMDFFREMQLAGIEPDEISLISVLPSCAQLGSLELGKWIHLY 266
Query: 245 TVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEG 304
R + ALI++YSKC + A ++F M ++++ W+ MI G+ HG
Sbjct: 267 AERRGFLKQTGVCNALIEMYSKCGVISQAIQLFGQMEGKDVISWSTMISGYAYHGNAHGA 326
Query: 305 IKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHY 364
I+ F + V P+ ITF+G++ AC + EG +YF M Y+I+P HY
Sbjct: 327 IETFNEMQRAKV-----KPNGITFLGLLSACSHVGMWQEGLRYFDMMRQDYQIEPKIEHY 381
Query: 365 WCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSF 424
C+ ++ A A E A EI + MP M +S +W SLLS CR G + +
Sbjct: 382 GCLIDVLARAGKLERAVEITKTMP-----MKPDSKIWGSLLSSCRTPGNLDVALVAMDHL 436
Query: 425 VDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLKEVVEKLKVG 484
V+++P+D Y L N+YA G+WEDV+R+R++++ M + PG L+++ +V++ G
Sbjct: 437 VELEPEDMGNYVLLANIYADLGKWEDVSRLRKMIRNENMKKTPGGSLIEVNNIVQEFVSG 496
Query: 485 H----FW 487
FW
Sbjct: 497 DNSKPFW 503
Score = 33.9 bits (76), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 33/173 (19%), Positives = 75/173 (43%), Gaps = 15/173 (8%)
Query: 236 NEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGH 295
NE + ++ + L + + T ++D K + ++ A R+F+ +++ N+ +N++I +
Sbjct: 24 NEWKKINASIIIHGLSQSSFMVTKMVDFCDKIEDMDYATRLFNQVSNPNVFLYNSIIRAY 83
Query: 296 CIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFY 355
+ + I+++ L+ + PD TF + +C G++ + F
Sbjct: 84 THNSLYCDVIRIYKQLLRKSFE----LPDRFTFPFMFKSCASLGSCYLGKQVHGHLCKF- 138
Query: 356 KIKPNF--AHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLS 406
P F + ++Y + +A ++ +M E + I W SLLS
Sbjct: 139 --GPRFHVVTENALIDMYMKFDDLVDAHKVFDEMYER------DVISWNSLLS 183
>sp|Q9FLS9|PP441_ARATH Pentatricopeptide repeat-containing protein At5g61800
OS=Arabidopsis thaliana GN=PCMP-E8 PE=2 SV=1
Length = 499
Score = 284 bits (726), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 158/478 (33%), Positives = 256/478 (53%), Gaps = 24/478 (5%)
Query: 1 MKQLLQIQAHLITSGLF---------FNNSFWTINLLKHSADFGSP--DYTVLVFKCINN 49
+K L Q A ITSG F N + I + SA Y VF+ I N
Sbjct: 17 LKHLHQFHAQFITSGRISNDFKQNSVFANVLFAITSISPSASASKEVVSYATSVFRFITN 76
Query: 50 PGTFCVNAVIKA---YSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCA--KTGCVE 104
P TFC N +I+ + S + + F+++M + P+ +TF +F +CA K G +
Sbjct: 77 PSTFCFNTIIRICTLHEPSSLSSKR--FFVEMRRRSVPPDFHTFPFVFKACAAKKNGDLT 134
Query: 105 RGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHV 164
H AL+ G+ +L +N+LI +Y +D A +F + RD++++N ++ G V
Sbjct: 135 LVKTLHCQALRFGLLSDLFTLNTLIRVYSLIAPIDSALQLFDENPQRDVVTYNVLIDGLV 194
Query: 165 RSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMAS 224
++ ++ A ELFD MP R++VSWN +ISGY++ + ++KLF EM+ G + ++ + S
Sbjct: 195 KAREIVRARELFDSMPLRDLVSWNSLISGYAQMNHCREAIKLFDEMVALGLKPDNVAIVS 254
Query: 225 VLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRN 284
L+AC +S + +G+++H YT R L + L T L+D Y+KC ++ A +F+ +D+
Sbjct: 255 TLSACAQSGDWQKGKAIHDYTKRKRLFIDSFLATGLVDFYAKCGFIDTAMEIFELCSDKT 314
Query: 285 LVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEG 344
L WNAMI G +HG E + F +V+ I PD +TFI V+ C + L+ E
Sbjct: 315 LFTWNAMITGLAMHGNGELTVDYFRKMVS-----SGIKPDGVTFISVLVGCSHSGLVDEA 369
Query: 345 RKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSL 404
R F QM Y + HY CMA+L A L EEA E++ +MP+D N + + W L
Sbjct: 370 RNLFDQMRSLYDVNREMKHYGCMADLLGRAGLIEEAAEMIEQMPKDGGNRE-KLLAWSGL 428
Query: 405 LSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRR 462
L CR G + + E+ A + P+D Y+ ++ +YA A +WE+V +VRE++ + +
Sbjct: 429 LGGCRIHGNIEIAEKAANRVKALSPEDGGVYKVMVEMYANAERWEEVVKVREIIDRDK 486
>sp|Q9SZT8|PP354_ARATH Pentatricopeptide repeat-containing protein At4g37380,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-H48 PE=3
SV=1
Length = 632
Score = 283 bits (724), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 154/496 (31%), Positives = 268/496 (54%), Gaps = 16/496 (3%)
Query: 1 MKQLLQIQAHLITSGLFFNNSFWTINLLKHSA--DFGSPDYTVLVFKCINNPGTFCVNAV 58
+ ++LQI A ++ L + + +NL H A G +++ +F +P F A
Sbjct: 42 VDEVLQIHAAILRHNLLLHPRYPVLNLKLHRAYASHGKIRHSLALFHQTIDPDLFLFTAA 101
Query: 59 IKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGV 118
I S + + DQ + Y+Q++ + PN +TF SL SC+ + G + H LK G+
Sbjct: 102 INTASINGLKDQAFLLYVQLLSSEINPNEFTFSSLLKSCS----TKSGKLIHTHVLKFGL 157
Query: 119 DFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDI 178
+ V L+++Y G + A+ +F +M R L+S ++++ + + G++ AA LFD
Sbjct: 158 GIDPYVATGLVDVYAKGGDVVSAQKVFDRMPERSLVSSTAMITCYAKQGNVEAARALFDS 217
Query: 179 MPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDK-TMASVLTACGRSARFNE 237
M ER++VSWN+MI GY++ G P +L LF++++ G D+ T+ + L+AC +
Sbjct: 218 MCERDIVSWNVMIDGYAQHGFPNDALMLFQKLLAEGKPKPDEITVVAALSACSQIGALET 277
Query: 238 GRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCI 297
GR +H + + ++ N+ + T LID+YSKC +E A VF+ +++V WNAMI G+ +
Sbjct: 278 GRWIHVFVKSSRIRLNVKVCTGLIDMYSKCGSLEEAVLVFNDTPRKDIVAWNAMIAGYAM 337
Query: 298 HGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKI 357
HG ++ ++LF + T + P +ITFIG + AC A L+ EG + F M Y I
Sbjct: 338 HGYSQDALRLFNEMQGIT----GLQPTDITFIGTLQACAHAGLVNEGIRIFESMGQEYGI 393
Query: 358 KPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMV 417
KP HY C+ +L A + A E ++ M NM +S++W S+L C+ G +
Sbjct: 394 KPKIEHYGCLVSLLGRAGQLKRAYETIKNM-----NMDADSVLWSSVLGSCKLHGDFVLG 448
Query: 418 ERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLKEV 477
+ +A+ + ++ ++ Y L N+YA G +E VA+VR LMK++ + + PG ++++
Sbjct: 449 KEIAEYLIGLNIKNSGIYVLLSNIYASVGDYEGVAKVRNLMKEKGIVKEPGISTIEIENK 508
Query: 478 VEKLKVGHFWRGGMKE 493
V + + G KE
Sbjct: 509 VHEFRAGDREHSKSKE 524
>sp|Q9FJY7|PP449_ARATH Pentatricopeptide repeat-containing protein At5g66520
OS=Arabidopsis thaliana GN=PCMP-H61 PE=2 SV=1
Length = 620
Score = 275 bits (702), Expect = 9e-73, Method: Compositional matrix adjust.
Identities = 148/486 (30%), Positives = 252/486 (51%), Gaps = 14/486 (2%)
Query: 2 KQLLQIQAHLITSGLFFNNSFWTINLLKHSADFGSPD---YTVLVFKCINNPGTFCVNAV 58
++L QI A ++ +GL +S+ L S D Y +VF + P TF N +
Sbjct: 28 EELKQIHARMLKTGLM-QDSYAITKFLSFCISSTSSDFLPYAQIVFDGFDRPDTFLWNLM 86
Query: 59 IKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGV 118
I+ +S S P++ ++ Y +M+ + N+YTF SL +C+ E H K G
Sbjct: 87 IRGFSCSDEPERSLLLYQRMLCSSAPHNAYTFPSLLKACSNLSAFEETTQIHAQITKLGY 146
Query: 119 DFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDI 178
+ ++ +NSLIN Y G A +F ++ D +SWNS++ G+V++G M A LF
Sbjct: 147 ENDVYAVNSLINSYAVTGNFKLAHLLFDRIPEPDDVSWNSVIKGYVKAGKMDIALTLFRK 206
Query: 179 MPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEG 238
M E+N +SW MISGY ++ +L+LF EM S ++ ++A+ L+AC + +G
Sbjct: 207 MAEKNAISWTTMISGYVQADMNKEALQLFHEMQNSDVEPDNVSLANALSACAQLGALEQG 266
Query: 239 RSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIH 298
+ +H Y +T ++ + +L LID+Y+KC ++E A VF ++ +++ W A+I G+ H
Sbjct: 267 KWIHSYLNKTRIRMDSVLGCVLIDMYAKCGEMEEALEVFKNIKKKSVQAWTALISGYAYH 326
Query: 299 GKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIK 358
G E I F + I P+ ITF V+ AC L+ EG+ F M Y +K
Sbjct: 327 GHGREAISKFMEM-----QKMGIKPNVITFTAVLTACSYTGLVEEGKLIFYSMERDYNLK 381
Query: 359 PNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVE 418
P HY C+ +L A L +EA+ +++MP + +++W +LL CR + + E
Sbjct: 382 PTIEHYGCIVDLLGRAGLLDEAKRFIQEMP-----LKPNAVIWGALLKACRIHKNIELGE 436
Query: 419 RLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLKEVV 478
+ + + +DP RY N++A+ +W+ A R LMK++ + ++PGC + L+
Sbjct: 437 EIGEILIAIDPYHGGRYVHKANIHAMDKKWDKAAETRRLMKEQGVAKVPGCSTISLEGTT 496
Query: 479 EKLKVG 484
+ G
Sbjct: 497 HEFLAG 502
>sp|Q9CA54|PP122_ARATH Pentatricopeptide repeat-containing protein At1g74630
OS=Arabidopsis thaliana GN=PCMP-H71 PE=2 SV=1
Length = 643
Score = 274 bits (701), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 162/535 (30%), Positives = 277/535 (51%), Gaps = 46/535 (8%)
Query: 1 MKQLLQIQAHLITSGLFFNNSFWTINLLKHSADFGSP--DYTVLVFKCINNPGTFCVNAV 58
++ L QI I G+ +S++T L+ H A S Y + C P F N +
Sbjct: 18 LRALTQIHGLFIKYGVD-TDSYFTGKLILHCAISISDALPYARRLLLCFPEPDAFMFNTL 76
Query: 59 IKAYSNSCVPDQGVVFYLQMIKNGFM-PNSYTFVSLFGSCAKTGCVERGGMCHGLALKNG 117
++ YS S P V +++M++ GF+ P+S++F + + + G H ALK+G
Sbjct: 77 VRGYSESDEPHNSVAVFVEMMRKGFVFPDSFSFAFVIKAVENFRSLRTGFQMHCQALKHG 136
Query: 118 VDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFD 177
++ L V +LI MYG G ++ AR +F +M +L++WN++++ R D++ A E+FD
Sbjct: 137 LESHLFVGTTLIGMYGGCGCVEFARKVFDEMHQPNLVAWNAVITACFRGNDVAGAREIFD 196
Query: 178 IMPERNVVSWNIMISGYSKSGNPGCSLKLF------------------------------ 207
M RN SWN+M++GY K+G + ++F
Sbjct: 197 KMLVRNHTSWNVMLAGYIKAGELESAKRIFSEMPHRDDVSWSTMIVGIAHNGSFNESFLY 256
Query: 208 -REMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSK 266
RE+ ++G N+ ++ VL+AC +S F G+ +HG+ + + ++ ALID+YS+
Sbjct: 257 FRELQRAGMSPNEVSLTGVLSACSQSGSFEFGKILHGFVEKAGYSWIVSVNNALIDMYSR 316
Query: 267 CQKVEVAQRVFDSMAD-RNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDE 325
C V +A+ VF+ M + R +V W +MI G +HG+ EE ++LF N A G ++PD
Sbjct: 317 CGNVPMARLVFEGMQEKRCIVSWTSMIAGLAMHGQGEEAVRLF----NEMTAYG-VTPDG 371
Query: 326 ITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILR 385
I+FI ++ AC A L+ EG YF +M Y I+P HY CM +LY + ++A + +
Sbjct: 372 ISFISLLHACSHAGLIEEGEDYFSEMKRVYHIEPEIEHYGCMVDLYGRSGKLQKAYDFIC 431
Query: 386 KMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVA 445
+MP + +I+W +LL C G + + E++ + ++DP + L N YA A
Sbjct: 432 QMP-----IPPTAIVWRTLLGACSSHGNIELAEQVKQRLNELDPNNSGDLVLLSNAYATA 486
Query: 446 GQWEDVARVRELMKKRRMGRMPGCRLVDLKEVVEKLKVGHFWRGGMKEEVNKMME 500
G+W+DVA +R+ M +R+ + LV++ + + K G +G E K+ E
Sbjct: 487 GKWKDVASIRKSMIVQRIKKTTAWSLVEVGKTMYKFTAGEKKKGIDIEAHEKLKE 541
Score = 78.6 bits (192), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 62/217 (28%), Positives = 93/217 (42%), Gaps = 34/217 (15%)
Query: 91 VSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSP 150
+SL SC + + HGL +K GVD + LI + CA ++
Sbjct: 9 LSLLNSCKNLRALTQ---IHGLFIKYGVDTDSYFTGKLI--------LHCAISI------ 51
Query: 151 RDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREM 210
S + A L PE + +N ++ GYS+S P S+ +F EM
Sbjct: 52 ---------------SDALPYARRLLLCFPEPDAFMFNTLVRGYSESDEPHNSVAVFVEM 96
Query: 211 MKSGFRGNDK-TMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQK 269
M+ GF D + A V+ A G +H ++ L+ ++ + T LI +Y C
Sbjct: 97 MRKGFVFPDSFSFAFVIKAVENFRSLRTGFQMHCQALKHGLESHLFVGTTLIGMYGGCGC 156
Query: 270 VEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIK 306
VE A++VFD M NLV WNA+I C G G +
Sbjct: 157 VEFARKVFDEMHQPNLVAWNAVITA-CFRGNDVAGAR 192
>sp|P0C8Q7|PP369_ARATH Pentatricopeptide repeat-containing protein At5g08305
OS=Arabidopsis thaliana GN=PCMP-E105 PE=2 SV=1
Length = 534
Score = 271 bits (694), Expect = 8e-72, Method: Compositional matrix adjust.
Identities = 155/478 (32%), Positives = 262/478 (54%), Gaps = 15/478 (3%)
Query: 1 MKQLLQIQAHLITSGLFFNNSFWTINL-LKHSADFGSPDYTVLVFKCINNPGTFCVNAVI 59
M +L +I LIT GL F + L + G DY +++P + N VI
Sbjct: 21 MSELYKIHTLLITLGLSEEEPFVSQTLSFSALSSSGDVDYAYKFLSKLSDPPNYGWNFVI 80
Query: 60 KAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVD 119
+ +SNS P++ + Y+QM++ G +P+ T+ L S ++ + GG H +K+G++
Sbjct: 81 RGFSNSRNPEKSISVYIQMLRFGLLPDHMTYPFLMKSSSRLSNRKLGGSLHCSVVKSGLE 140
Query: 120 FELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIM 179
++L + N+LI+MYG F AR +F +M ++L++WNSI+ + +SGD+ +A +FD M
Sbjct: 141 WDLFICNTLIHMYGSFRDQASARKLFDEMPHKNLVTWNSILDAYAKSGDVVSARLVFDEM 200
Query: 180 PERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSG-FRGNDKTMASVLTACGRSARFNEG 238
ER+VV+W+ MI GY K G +L++F +MM+ G + N+ TM SV+ AC N G
Sbjct: 201 SERDVVTWSSMIDGYVKRGEYNKALEIFDQMMRMGSSKANEVTMVSVICACAHLGALNRG 260
Query: 239 RSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVF--DSMADRNLVCWNAMILGHC 296
++VH Y + L +IL T+LID+Y+KC + A VF S+ + + + WNA+I G
Sbjct: 261 KTVHRYILDVHLPLTVILQTSLIDMYAKCGSIGDAWSVFYRASVKETDALMWNAIIGGLA 320
Query: 297 IHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYK 356
HG E ++LF + I PDEITF+ ++ AC L+ E +F+ + +
Sbjct: 321 SHGFIRESLQLFHKMRE-----SKIDPDEITFLCLLAACSHGGLVKEAWHFFKSLKE-SG 374
Query: 357 IKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAM 416
+P HY CM ++ + A L ++A + + +MP + M +LL+ C G + +
Sbjct: 375 AEPKSEHYACMVDVLSRAGLVKDAHDFISEMP-----IKPTGSMLGALLNGCINHGNLEL 429
Query: 417 VERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDL 474
E + K +++ P + RY L NVYA+ Q+ +RE M+K+ + ++ G ++DL
Sbjct: 430 AETVGKKLIELQPHNDGRYVGLANVYAINKQFRAARSMREAMEKKGVKKIAGHSILDL 487
>sp|Q683I9|PP295_ARATH Pentatricopeptide repeat-containing protein At3g62890
OS=Arabidopsis thaliana GN=PCMP-H82 PE=2 SV=1
Length = 573
Score = 270 bits (689), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 152/442 (34%), Positives = 252/442 (57%), Gaps = 18/442 (4%)
Query: 52 TFCVNAVIKAYSNSCVPDQ---GVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGM 108
+F N +I+A ++ Q + YL+M + P+ +TF L S + G
Sbjct: 24 SFLWNIIIRAIVHNVSSPQRHSPISVYLRMRNHRVSPDFHTFPFLLPSFHNPLHLPLGQR 83
Query: 109 CHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGD 168
H L G+D + V SL+NMY G + A+ +F +DL +WNS+V+ + ++G
Sbjct: 84 THAQILLFGLDKDPFVRTSLLNMYSSCGDLRSAQRVFDDSGSKDLPAWNSVVNAYAKAGL 143
Query: 169 MSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMM-----KSGFRGNDKTMA 223
+ A +LFD MPERNV+SW+ +I+GY G +L LFREM ++ R N+ TM+
Sbjct: 144 IDDARKLFDEMPERNVISWSCLINGYVMCGKYKEALDLFREMQLPKPNEAFVRPNEFTMS 203
Query: 224 SVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSM-AD 282
+VL+ACGR +G+ VH Y + ++ +I+L TALID+Y+KC +E A+RVF+++ +
Sbjct: 204 TVLSACGRLGALEQGKWVHAYIDKYHVEIDIVLGTALIDMYAKCGSLERAKRVFNALGSK 263
Query: 283 RNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLT 342
+++ ++AMI ++G +E +LF+ + +I+P+ +TF+G++ ACV L+
Sbjct: 264 KDVKAYSAMICCLAMYGLTDECFQLFSEMTTSD----NINPNSVTFVGILGACVHRGLIN 319
Query: 343 EGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWV 402
EG+ YF+ MI+ + I P+ HY CM +LY + L +EAE + MP + D ++W
Sbjct: 320 EGKSYFKMMIEEFGITPSIQHYGCMVDLYGRSGLIKEAESFIASMPMEPD-----VLIWG 374
Query: 403 SLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRR 462
SLLS R G + E K +++DP + Y L NVYA G+W +V +R M+ +
Sbjct: 375 SLLSGSRMLGDIKTCEGALKRLIELDPMNSGAYVLLSNVYAKTGRWMEVKCIRHEMEVKG 434
Query: 463 MGRMPGCRLVDLKEVVEKLKVG 484
+ ++PGC V+++ VV + VG
Sbjct: 435 INKVPGCSYVEVEGVVHEFVVG 456
>sp|Q9LSB8|PP235_ARATH Putative pentatricopeptide repeat-containing protein At3g15930
OS=Arabidopsis thaliana GN=PCMP-E51 PE=3 SV=2
Length = 687
Score = 268 bits (685), Expect = 7e-71, Method: Compositional matrix adjust.
Identities = 160/504 (31%), Positives = 258/504 (51%), Gaps = 11/504 (2%)
Query: 6 QIQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSNS 65
++ H++ GL +N + L+K + G D VF F N +I Y+
Sbjct: 156 KLHCHVVKFGLG-SNLYVQNALVKMYSLCGLMDMARGVFDRRCKEDVFSWNLMISGYNRM 214
Query: 66 CVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVM 125
++ + ++M +N P S T + + +C+K + H + + L +
Sbjct: 215 KEYEESIELLVEMERNLVSPTSVTLLLVLSACSKVKDKDLCKRVHEYVSECKTEPSLRLE 274
Query: 126 NSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVV 185
N+L+N Y G MD A +F M RD+ISW SIV G+V G++ A FD MP R+ +
Sbjct: 275 NALVNAYAACGEMDIAVRIFRSMKARDVISWTSIVKGYVERGNLKLARTYFDQMPVRDRI 334
Query: 186 SWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYT 245
SW IMI GY ++G SL++FREM +G ++ TM SVLTAC G + Y
Sbjct: 335 SWTIMIDGYLRAGCFNESLEIFREMQSAGMIPDEFTMVSVLTACAHLGSLEIGEWIKTYI 394
Query: 246 VRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGI 305
+ +K ++++ ALID+Y KC E AQ+VF M R+ W AM++G +G+ +E I
Sbjct: 395 DKNKIKNDVVVGNALIDMYFKCGCSEKAQKVFHDMDQRDKFTWTAMVVGLANNGQGQEAI 454
Query: 306 KLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYW 365
K+F + + SI PD+IT++GV+ AC + ++ + RK+F +M ++I+P+ HY
Sbjct: 455 KVFFQMQD-----MSIQPDDITYLGVLSACNHSGMVDQARKFFAKMRSDHRIEPSLVHYG 509
Query: 366 CMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFV 425
CM ++ A L +EA EILRKMP M+ SI+W +LL R M E AK +
Sbjct: 510 CMVDMLGRAGLVKEAYEILRKMP-----MNPNSIVWGALLGASRLHNDEPMAELAAKKIL 564
Query: 426 DMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLKEVVEKLKVGH 485
+++P + + Y L N+YA +W+D+ VR + + + PG L+++ + G
Sbjct: 565 ELEPDNGAVYALLCNIYAGCKRWKDLREVRRKIVDVAIKKTPGFSLIEVNGFAHEFVAGD 624
Query: 486 FWRGGMKEEVNKMMECRQSRSLAT 509
+E K+ E Q + A
Sbjct: 625 KSHLQSEEIYMKLEELAQESTFAA 648
Score = 130 bits (328), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 107/421 (25%), Positives = 179/421 (42%), Gaps = 72/421 (17%)
Query: 3 QLLQIQAHLITSGLFFNNSF-------WTINLLKHSADFGSPDYTVLVFKCINNPGTFCV 55
Q Q+ + IT G+ N +F W L H + Y +F I P
Sbjct: 49 QFKQLHSQSITRGVAPNPTFQKKLFVFWCSRLGGHVS------YAYKLFVKIPEPDVVVW 102
Query: 56 NAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTG-CVERGGMCHGLAL 114
N +IK +S +GV YL M+K G P+S+TF L + G + G H +
Sbjct: 103 NNMIKGWSKVDCDGEGVRLYLNMLKEGVTPDSHTFPFLLNGLKRDGGALACGKKLHCHVV 162
Query: 115 KNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHE 174
K G+ L V N+L+ MY G MD AR +F + D+ SWN ++SG+ R + + E
Sbjct: 163 KFGLGSNLYVQNALVKMYSLCGLMDMARGVFDRRCKEDVFSWNLMISGYNRMKEYEESIE 222
Query: 175 LFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSAR 234
L M ERN+VS T+ VL+AC +
Sbjct: 223 LLVEM-ERNLVS------------------------------PTSVTLLLVLSACSKVKD 251
Query: 235 FNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILG 294
+ + VH Y +P++ L+ AL++ Y+ C ++++A R+F SM R+++ W +++ G
Sbjct: 252 KDLCKRVHEYVSECKTEPSLRLENALVNAYAACGEMDIAVRIFRSMKARDVISWTSIVKG 311
Query: 295 HCIHGKPEEGIKLF-----------TALVNGTVAGGSIS---------------PDEITF 328
+ G + F T +++G + G + PDE T
Sbjct: 312 YVERGNLKLARTYFDQMPVRDRISWTIMIDGYLRAGCFNESLEIFREMQSAGMIPDEFTM 371
Query: 329 IGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMP 388
+ V+ AC L G ++ + ID KIK + + ++Y +E+A+++ M
Sbjct: 372 VSVLTACAHLGSLEIG-EWIKTYIDKNKIKNDVVVGNALIDMYFKCGCSEKAQKVFHDMD 430
Query: 389 E 389
+
Sbjct: 431 Q 431
Score = 99.4 bits (246), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 80/296 (27%), Positives = 138/296 (46%), Gaps = 23/296 (7%)
Query: 153 LISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMK 212
+ W S + GHV S A++LF +PE +VV WN MI G+SK G ++L+ M+K
Sbjct: 73 FVFWCSRLGGHV-----SYAYKLFVKIPEPDVVVWNNMIKGWSKVDCDGEGVRLYLNMLK 127
Query: 213 SGFRGNDKTMASVLTACGRSA-RFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVE 271
G + T +L R G+ +H + V+ L N+ + AL+ +YS C ++
Sbjct: 128 EGVTPDSHTFPFLLNGLKRDGGALACGKKLHCHVVKFGLGSNLYVQNALVKMYSLCGLMD 187
Query: 272 VAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGV 331
+A+ VFD ++ WN MI G+ + EE I+L + V SP +T + V
Sbjct: 188 MARGVFDRRCKEDVFSWNLMISGYNRMKEYEESIELLVEMERNLV-----SPTSVTLLLV 242
Query: 332 ICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDN 391
+ AC + + + K + + K +P+ + N YA + A I R M
Sbjct: 243 LSACSKVK-DKDLCKRVHEYVSECKTEPSLRLENALVNAYAACGEMDIAVRIFRSMK--- 298
Query: 392 DNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDP-QDFSRYQFLLNVYAVAG 446
+ + I W S++ +G + +LA+++ D P +D + +++ Y AG
Sbjct: 299 ---ARDVISWTSIVKGYVERGNL----KLARTYFDQMPVRDRISWTIMIDGYLRAG 347
>sp|Q9SJZ3|PP169_ARATH Pentatricopeptide repeat-containing protein At2g22410,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-E28 PE=2
SV=1
Length = 681
Score = 268 bits (684), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 137/423 (32%), Positives = 225/423 (53%), Gaps = 10/423 (2%)
Query: 56 NAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALK 115
N +I Y ++ + Y M G P+ T + L SC+ G + RG + +
Sbjct: 226 NCLINGYKKIGEAEKAIYVYKLMESEGVKPDDVTMIGLVSSCSMLGDLNRGKEFYEYVKE 285
Query: 116 NGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHEL 175
NG+ +P++N+L++M+ G + AR +F + R ++SW +++SG+ R G + + +L
Sbjct: 286 NGLRMTIPLVNALMDMFSKCGDIHEARRIFDNLEKRTIVSWTTMISGYARCGLLDVSRKL 345
Query: 176 FDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARF 235
FD M E++VV WN MI G ++ +L LF+EM S + ++ TM L+AC +
Sbjct: 346 FDDMEEKDVVLWNAMIGGSVQAKRGQDALALFQEMQTSNTKPDEITMIHCLSACSQLGAL 405
Query: 236 NEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGH 295
+ G +H Y + SL N+ L T+L+D+Y+KC + A VF + RN + + A+I G
Sbjct: 406 DVGIWIHRYIEKYSLSLNVALGTSLVDMYAKCGNISEALSVFHGIQTRNSLTYTAIIGGL 465
Query: 296 CIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFY 355
+HG I F +++ +A PDEITFIG++ AC ++ GR YF QM +
Sbjct: 466 ALHGDASTAISYFNEMIDAGIA-----PDEITFIGLLSACCHGGMIQTGRDYFSQMKSRF 520
Query: 356 KIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVA 415
+ P HY M +L A L EEA+ ++ MP M ++ +W +LL CR G V
Sbjct: 521 NLNPQLKHYSIMVDLLGRAGLLEEADRLMESMP-----MEADAAVWGALLFGCRMHGNVE 575
Query: 416 MVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLK 475
+ E+ AK +++DP D Y L +Y A WED R R +M +R + ++PGC +++
Sbjct: 576 LGEKAAKKLLELDPSDSGIYVLLDGMYGEANMWEDAKRARRMMNERGVEKIPGCSSIEVN 635
Query: 476 EVV 478
+V
Sbjct: 636 GIV 638
Score = 154 bits (388), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 129/519 (24%), Positives = 215/519 (41%), Gaps = 97/519 (18%)
Query: 3 QLLQIQAHLITSGLFFNNSFWTINLLKHSADFGSP--DYTVLVFKCINNPGTFCVNAVIK 60
L QIQA +I +GL + F + L+ A S DY+V + K I NP F N I+
Sbjct: 68 HLKQIQAQMIINGLILD-PFASSRLIAFCALSESRYLDYSVKILKGIENPNIFSWNVTIR 126
Query: 61 AYSNSCVPDQGVVFYLQMIKNG---FMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNG 117
+S S P + + Y QM+++G P+ +T+ LF CA G M G LK
Sbjct: 127 GFSESENPKESFLLYKQMLRHGCCESRPDHFTYPVLFKVCADLRLSSLGHMILGHVLKLR 186
Query: 118 VDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFD 177
++ V N+ I+M+ G M+ AR +F + RDL+SWN ++
Sbjct: 187 LELVSHVHNASIHMFASCGDMENARKVFDESPVRDLVSWNCLI----------------- 229
Query: 178 IMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNE 237
+GY K G ++ +++ M G + +D TM ++++C N
Sbjct: 230 --------------NGYKKIGEAEKAIYVYKLMESEGVKPDDVTMIGLVSSCSMLGDLNR 275
Query: 238 GRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCI 297
G+ + Y L+ I L AL+D++SKC + A+R+FD++ R +V W MI G+
Sbjct: 276 GKEFYEYVKENGLRMTIPLVNALMDMFSKCGDIHEARRIFDNLEKRTIVSWTTMISGYAR 335
Query: 298 HG-----------KPEEGIKLFTALVNGTVAG---------------GSISPDEITFIGV 331
G E+ + L+ A++ G+V + PDEIT I
Sbjct: 336 CGLLDVSRKLFDDMEEKDVVLWNAMIGGSVQAKRGQDALALFQEMQTSNTKPDEITMIHC 395
Query: 332 ICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDN 391
+ AC + L G + + I+ Y + N A + ++YA EA + + N
Sbjct: 396 LSACSQLGALDVG-IWIHRYIEKYSLSLNVALGTSLVDMYAKCGNISEALSVFHGIQTRN 454
Query: 392 D-----------------------------NMSFESIMWVSLLSLCRFQGAVAMVERL-- 420
++ + I ++ LLS C G +
Sbjct: 455 SLTYTAIIGGLALHGDASTAISYFNEMIDAGIAPDEITFIGLLSACCHGGMIQTGRDYFS 514
Query: 421 -AKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELM 458
KS +++PQ Y ++++ AG E+ R+ E M
Sbjct: 515 QMKSRFNLNPQ-LKHYSIMVDLLGRAGLLEEADRLMESM 552
Score = 39.3 bits (90), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 38/188 (20%), Positives = 71/188 (37%), Gaps = 31/188 (16%)
Query: 26 NLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMP 85
+L+ A G+ + VF I + A+I + + ++ +MI G P
Sbjct: 429 SLVDMYAKCGNISEALSVFHGIQTRNSLTYTAIIGGLALHGDASTAISYFNEMIDAGIAP 488
Query: 86 NSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMF 145
+ TF+ L +C CHG ++ G D+ F M N+
Sbjct: 489 DEITFIGLLSAC-----------CHGGMIQTGRDY--------------FSQMKSRFNLN 523
Query: 146 VQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMP-ERNVVSWNIMISGYSKSGNPGCSL 204
Q+ ++ +V R+G + A L + MP E + W ++ G GN
Sbjct: 524 PQLK-----HYSIMVDLLGRAGLLEEADRLMESMPMEADAAVWGALLFGCRMHGNVELGE 578
Query: 205 KLFREMMK 212
K +++++
Sbjct: 579 KAAKKLLE 586
>sp|O49399|PP321_ARATH Pentatricopeptide repeat-containing protein At4g18840
OS=Arabidopsis thaliana GN=PCMP-E101 PE=3 SV=2
Length = 545
Score = 267 bits (682), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 155/500 (31%), Positives = 257/500 (51%), Gaps = 46/500 (9%)
Query: 1 MKQLLQIQAHLITSGLFFNNSFWTINLLKHSADFGSP---DYTVLVFKCINNPGTFCVNA 57
+ ++ Q A ++ +GLF +++F L+ +A P Y + I +P F N+
Sbjct: 52 LTEIQQAHAFMLKTGLF-HDTFSASKLVAFAATNPEPKTVSYAHSILNRIGSPNGFTHNS 110
Query: 58 VIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNG 117
VI+AY+NS P+ + + +M+ P+ Y+F + +CA E G HGL +K+G
Sbjct: 111 VIRAYANSSTPEVALTVFREMLLGPVFPDKYSFTFVLKACAAFCGFEEGRQIHGLFIKSG 170
Query: 118 VDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSI------------------ 159
+ ++ V N+L+N+YG G + AR + +M RD +SWNS+
Sbjct: 171 LVTDVFVENTLVNVYGRSGYFEIARKVLDRMPVRDAVSWNSLLSAYLEKGLVDEARALFD 230
Query: 160 -------------VSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKL 206
+SG+ +G + A E+FD MP R+VVSWN M++ Y+ G L++
Sbjct: 231 EMEERNVESWNFMISGYAAAGLVKEAKEVFDSMPVRDVVSWNAMVTAYAHVGCYNEVLEV 290
Query: 207 FREMMKSGFRGNDK-TMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYS 265
F +M+ D T+ SVL+AC ++G VH Y + ++ L TAL+D+YS
Sbjct: 291 FNKMLDDSTEKPDGFTLVSVLSACASLGSLSQGEWVHVYIDKHGIEIEGFLATALVDMYS 350
Query: 266 KCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDE 325
KC K++ A VF + + R++ WN++I +HG ++ +++F+ +V P+
Sbjct: 351 KCGKIDKALEVFRATSKRDVSTWNSIISDLSVHGLGKDALEIFSEMVY-----EGFKPNG 405
Query: 326 ITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILR 385
ITFIGV+ AC +L + RK F M Y+++P HY CM +L EEAEE++
Sbjct: 406 ITFIGVLSACNHVGMLDQARKLFEMMSSVYRVEPTIEHYGCMVDLLGRMGKIEEAEELVN 465
Query: 386 KMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVA 445
++P D SI+ SLL C+ G + ER+A ++++ +D S Y + N+YA
Sbjct: 466 EIPADE-----ASILLESLLGACKRFGQLEQAERIANRLLELNLRDSSGYAQMSNLYASD 520
Query: 446 GQWEDVARVRELMKKRRMGR 465
G+WE V R M+ R+ R
Sbjct: 521 GRWEKVIDGRRNMRAERVNR 540
>sp|Q9FNN7|PP371_ARATH Pentatricopeptide repeat-containing protein At5g08510
OS=Arabidopsis thaliana GN=PCMP-E20 PE=2 SV=1
Length = 511
Score = 264 bits (675), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 153/470 (32%), Positives = 249/470 (52%), Gaps = 17/470 (3%)
Query: 1 MKQLLQIQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIK 60
M + Q+ AH + +G+ T +LL+ + Y +F N TF N +I+
Sbjct: 1 MNGIKQLHAHCLRTGVD-----ETKDLLQRLLLIPNLVYARKLFDHHQNSCTFLYNKLIQ 55
Query: 61 AYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDF 120
AY P + +V Y + +G P+ +TF +F + A + H ++G +
Sbjct: 56 AYYVHHQPHESIVLYNLLSFDGLRPSHHTFNFIFAASASFSSARPLRLLHSQFFRSGFES 115
Query: 121 ELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMP 180
+ +LI Y GA+ CAR +F +MS RD+ WN++++G+ R GDM AA ELFD MP
Sbjct: 116 DSFCCTTLITAYAKLGALCCARRVFDEMSKRDVPVWNAMITGYQRRGDMKAAMELFDSMP 175
Query: 181 ERNVVSWNIMISGYSKSGNPGCSLKLFREMMKS-GFRGNDKTMASVLTACGRSARFNEGR 239
+NV SW +ISG+S++GN +LK+F M K + N T+ SVL AC GR
Sbjct: 176 RKNVTSWTTVISGFSQNGNYSEALKMFLCMEKDKSVKPNHITVVSVLPACANLGELEIGR 235
Query: 240 SVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMAD-RNLVCWNAMILGHCIH 298
+ GY NI + A I++YSKC ++VA+R+F+ + + RNL WN+MI H
Sbjct: 236 RLEGYARENGFFDNIYVCNATIEMYSKCGMIDVAKRLFEELGNQRNLCSWNSMIGSLATH 295
Query: 299 GKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIK 358
GK +E + LF ++ PD +TF+G++ ACV ++ +G++ F+ M + +KI
Sbjct: 296 GKHDEALTLFAQMLR-----EGEKPDAVTFVGLLLACVHGGMVVKGQELFKSMEEVHKIS 350
Query: 359 PNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVE 418
P HY CM +L +EA ++++ MP M ++++W +LL C F G V + E
Sbjct: 351 PKLEHYGCMIDLLGRVGKLQEAYDLIKTMP-----MKPDAVVWGTLLGACSFHGNVEIAE 405
Query: 419 RLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPG 468
+++ ++P + + N+YA +W+ V R+R+LMKK M + G
Sbjct: 406 IASEALFKLEPTNPGNCVIMSNIYAANEKWDGVLRMRKLMKKETMTKAAG 455
>sp|Q9LNU6|PPR53_ARATH Pentatricopeptide repeat-containing protein At1g20230
OS=Arabidopsis thaliana GN=PCMP-H21 PE=2 SV=2
Length = 760
Score = 263 bits (673), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 147/449 (32%), Positives = 246/449 (54%), Gaps = 14/449 (3%)
Query: 56 NAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALK 115
N ++ ++ S + VV + ++ GF P+ T S+ S + + G + HG +K
Sbjct: 221 NGILSGFNRSGYHKEAVVMFQKIHHLGFCPDQVTVSSVLPSVGDSEMLNMGRLIHGYVIK 280
Query: 116 NGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHEL 175
G+ + V++++I+MYG G + ++F Q + N+ ++G R+G + A E+
Sbjct: 281 QGLLKDKCVISAMIDMYGKSGHVYGIISLFNQFEMMEAGVCNAYITGLSRNGLVDKALEM 340
Query: 176 FDIMPER----NVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGR 231
F++ E+ NVVSW +I+G +++G +L+LFREM +G + N T+ S+L ACG
Sbjct: 341 FELFKEQTMELNVVSWTSIIAGCAQNGKDIEALELFREMQVAGVKPNHVTIPSMLPACGN 400
Query: 232 SARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAM 291
A GRS HG+ VR L N+ + +ALID+Y+KC ++ ++Q VF+ M +NLVCWN++
Sbjct: 401 IAALGHGRSTHGFAVRVHLLDNVHVGSALIDMYAKCGRINLSQIVFNMMPTKNLVCWNSL 460
Query: 292 ILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQM 351
+ G +HGK +E + +F +L+ + PD I+F ++ AC + L EG KYF+ M
Sbjct: 461 MNGFSMHGKAKEVMSIFESLMR-----TRLKPDFISFTSLLSACGQVGLTDEGWKYFKMM 515
Query: 352 IDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQ 411
+ Y IKP HY CM NL A +EA +++++MP + D S +W +LL+ CR Q
Sbjct: 516 SEEYGIKPRLEHYSCMVNLLGRAGKLQEAYDLIKEMPFEPD-----SCVWGALLNSCRLQ 570
Query: 412 GAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRL 471
V + E A+ ++P++ Y L N+YA G W +V +R M+ + + PGC
Sbjct: 571 NNVDLAEIAAEKLFHLEPENPGTYVLLSNIYAAKGMWTEVDSIRNKMESLGLKKNPGCSW 630
Query: 472 VDLKEVVEKLKVGHFWRGGMKEEVNKMME 500
+ +K V L G + + KM E
Sbjct: 631 IQVKNRVYTLLAGDKSHPQIDQITEKMDE 659
Score = 134 bits (336), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 89/359 (24%), Positives = 180/359 (50%), Gaps = 11/359 (3%)
Query: 6 QIQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSNS 65
Q A ++ SG N+ + + L+ +++ + LV + I +P + +++I A + +
Sbjct: 36 QAHARILKSGAQ-NDGYISAKLIASYSNYNCFNDADLVLQSIPDPTIYSFSSLIYALTKA 94
Query: 66 CVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVM 125
+ Q + + +M +G +P+S+ +LF CA+ + G H ++ +G+D + V
Sbjct: 95 KLFTQSIGVFSRMFSHGLIPDSHVLPNLFKVCAELSAFKVGKQIHCVSCVSGLDMDAFVQ 154
Query: 126 NSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMP----E 181
S+ +MY G M AR +F +MS +D+++ ++++ + R G + + M E
Sbjct: 155 GSMFHMYMRCGRMGDARKVFDRMSDKDVVTCSALLCAYARKGCLEEVVRILSEMESSGIE 214
Query: 182 RNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSV 241
N+VSWN ++SG+++SG ++ +F+++ GF + T++SVL + G S N GR +
Sbjct: 215 ANIVSWNGILSGFNRSGYHKEAVVMFQKIHHLGFCPDQVTVSSVLPSVGDSEMLNMGRLI 274
Query: 242 HGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKP 301
HGY ++ L + + +A+ID+Y K V +F+ NA I G +G
Sbjct: 275 HGYVIKQGLLKDKCVISAMIDMYGKSGHVYGIISLFNQFEMMEAGVCNAYITGLSRNGLV 334
Query: 302 EEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPN 360
++ +++F T + + +++ +I C + E + FR+M +KPN
Sbjct: 335 DKALEMFELFKEQT-----MELNVVSWTSIIAGCAQNGKDIEALELFREM-QVAGVKPN 387
Score = 37.0 bits (84), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 38/202 (18%), Positives = 84/202 (41%), Gaps = 26/202 (12%)
Query: 27 LLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPN 86
L+ A G + + +VF + C N+++ +S + + + +++ P+
Sbjct: 429 LIDMYAKCGRINLSQIVFNMMPTKNLVCWNSLMNGFSMHGKAKEVMSIFESLMRTRLKPD 488
Query: 87 SYTFVSLFGSCAKTGCVERG-GMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMF 145
+F SL +C + G + G ++ + G+ L + ++N+ G G + A ++
Sbjct: 489 FISFTSLLSACGQVGLTDEGWKYFKMMSEEYGIKPRLEHYSCMVNLLGRAGKLQEAYDLI 548
Query: 146 VQMS-PRDLISWNSIVSGHVRSGDMS----AAHELFDIMPERNVVSWNIMISGYSKSG-- 198
+M D W ++++ ++ AA +LF + PE N ++ ++ + Y+ G
Sbjct: 549 KEMPFEPDSCVWGALLNSCRLQNNVDLAEIAAEKLFHLEPE-NPGTYVLLSNIYAAKGMW 607
Query: 199 -----------------NPGCS 203
NPGCS
Sbjct: 608 TEVDSIRNKMESLGLKKNPGCS 629
>sp|O80488|PPR23_ARATH Pentatricopeptide repeat-containing protein At1g09190
OS=Arabidopsis thaliana GN=PCMP-E70 PE=2 SV=1
Length = 484
Score = 259 bits (662), Expect = 4e-68, Method: Compositional matrix adjust.
Identities = 153/467 (32%), Positives = 236/467 (50%), Gaps = 11/467 (2%)
Query: 3 QLLQIQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAY 62
+L +I AHL+ L +N + + + DY VF I NP NA+IK Y
Sbjct: 19 RLPEIHAHLLRHFLHGSN-LLLAHFISICGSLSNSDYANRVFSHIQNPNVLVFNAMIKCY 77
Query: 63 SNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFEL 122
S P + + F+ M G + YT+ L SC+ + G HG ++ G
Sbjct: 78 SLVGPPLESLSFFSSMKSRGIWADEYTYAPLLKSCSSLSDLRFGKCVHGELIRTGFHRLG 137
Query: 123 PVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPER 182
+ ++ +Y G M A+ +F +MS R+++ WN ++ G SGD+ LF M ER
Sbjct: 138 KIRIGVVELYTSGGRMGDAQKVFDEMSERNVVVWNLMIRGFCDSGDVERGLHLFKQMSER 197
Query: 183 NVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVH 242
++VSWN MIS SK G +L+LF EM+ GF ++ T+ +VL + G+ +H
Sbjct: 198 SIVSWNSMISSLSKCGRDREALELFCEMIDQGFDPDEATVVTVLPISASLGVLDTGKWIH 257
Query: 243 GYTVRTSL-KPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKP 301
+ L K I + AL+D Y K +E A +F M RN+V WN +I G ++GK
Sbjct: 258 STAESSGLFKDFITVGNALVDFYCKSGDLEAATAIFRKMQRRNVVSWNTLISGSAVNGKG 317
Query: 302 EEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNF 361
E GI LF A++ G ++P+E TF+GV+ C + G + F M++ +K++
Sbjct: 318 EFGIDLFDAMIE----EGKVAPNEATFLGVLACCSYTGQVERGEELFGLMMERFKLEART 373
Query: 362 AHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLA 421
HY M +L + + EA + L+ MP + + + MW SLLS CR G V + E A
Sbjct: 374 EHYGAMVDLMSRSGRITEAFKFLKNMPVNAN-----AAMWGSLLSACRSHGDVKLAEVAA 428
Query: 422 KSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPG 468
V ++P + Y L N+YA G+W+DV +VR LMKK R+ + G
Sbjct: 429 MELVKIEPGNSGNYVLLSNLYAEEGRWQDVEKVRTLMKKNRLRKSTG 475
>sp|P0C899|PP271_ARATH Putative pentatricopeptide repeat-containing protein At3g49142
OS=Arabidopsis thaliana GN=PCMP-H77 PE=3 SV=1
Length = 686
Score = 256 bits (653), Expect = 4e-67, Method: Compositional matrix adjust.
Identities = 156/521 (29%), Positives = 255/521 (48%), Gaps = 48/521 (9%)
Query: 1 MKQLLQIQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIK 60
++ L + + +I L N+S + L++ A VF I +N +I+
Sbjct: 55 IRTLRTVHSRIILEDLRCNSSLG-VKLMRAYASLKDVASARKVFDEIPERNVIIINVMIR 113
Query: 61 AYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDF 120
+Y N+ +GV + M P+ YTF + +C+ +G + G HG A K G+
Sbjct: 114 SYVNNGFYGEGVKVFGTMCGCNVRPDHYTFPCVLKACSCSGTIVIGRKIHGSATKVGLSS 173
Query: 121 ELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVR--------------- 165
L V N L++MYG G + AR + +MS RD++SWNS+V G+ +
Sbjct: 174 TLFVGNGLVSMYGKCGFLSEARLVLDEMSRRDVVSWNSLVVGYAQNQRFDDALEVCREME 233
Query: 166 -------SGDMSA---------------AHELFDIMPERNVVSWNIMISGYSKSGNPGCS 203
+G M++ ++F M ++++VSWN+MI Y K+ P +
Sbjct: 234 SVKISHDAGTMASLLPAVSNTTTENVMYVKDMFFKMGKKSLVSWNVMIGVYMKNAMPVEA 293
Query: 204 LKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDL 263
++L+ M GF + ++ SVL ACG ++ + G+ +HGY R L PN++L+ ALID+
Sbjct: 294 VELYSRMEADGFEPDAVSITSVLPACGDTSALSLGKKIHGYIERKKLIPNLLLENALIDM 353
Query: 264 YSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISP 323
Y+KC +E A+ VF++M R++V W AMI + G+ + + LF+ L + + P
Sbjct: 354 YAKCGCLEKARDVFENMKSRDVVSWTAMISAYGFSGRGCDAVALFSKLQD-----SGLVP 408
Query: 324 DEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEI 383
D I F+ + AC A LL EGR F+ M D YKI P H CM +L A +EA
Sbjct: 409 DSIAFVTTLAACSHAGLLEEGRSCFKLMTDHYKITPRLEHLACMVDLLGRAGKVKEAYRF 468
Query: 384 LRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYA 443
++ M +M +W +LL CR + A + P+ Y L N+YA
Sbjct: 469 IQDM-----SMEPNERVWGALLGACRVHSDTDIGLLAADKLFQLAPEQSGYYVLLSNIYA 523
Query: 444 VAGQWEDVARVRELMKKRRMGRMPGCRLVDLKEVVEKLKVG 484
AG+WE+V +R +MK + + + PG V++ ++ VG
Sbjct: 524 KAGRWEEVTNIRNIMKSKGLKKNPGASNVEVNRIIHTFLVG 564
>sp|Q9FG16|PP367_ARATH Pentatricopeptide repeat-containing protein At5g06540
OS=Arabidopsis thaliana GN=PCMP-H88 PE=2 SV=1
Length = 622
Score = 254 bits (648), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 133/446 (29%), Positives = 238/446 (53%), Gaps = 10/446 (2%)
Query: 39 YTVLVFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCA 98
Y +F I NP F N +I+ +S P + FY QM+K+ P++ TF L + +
Sbjct: 69 YAYGIFSQIQNPNLFVFNLLIRCFSTGAEPSKAFGFYTQMLKSRIWPDNITFPFLIKASS 128
Query: 99 KTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNS 158
+ CV G H ++ G ++ V NSL++MY G + A +F QM RD++SW S
Sbjct: 129 EMECVLVGEQTHSQIVRFGFQNDVYVENSLVHMYANCGFIAAAGRIFGQMGFRDVVSWTS 188
Query: 159 IVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGN 218
+V+G+ + G + A E+FD MP RN+ +W+IMI+GY+K+ ++ LF M + G N
Sbjct: 189 MVAGYCKCGMVENAREMFDEMPHRNLFTWSIMINGYAKNNCFEKAIDLFEFMKREGVVAN 248
Query: 219 DKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFD 278
+ M SV+++C G + Y V++ + N+IL TAL+D++ +C +E A VF+
Sbjct: 249 ETVMVSVISSCAHLGALEFGERAYEYVVKSHMTVNLILGTALVDMFWRCGDIEKAIHVFE 308
Query: 279 SMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRA 338
+ + + + W+++I G +HG + + F+ + ++ G I P ++TF V+ AC
Sbjct: 309 GLPETDSLSWSSIIKGLAVHGHAHKAMHYFSQM----ISLGFI-PRDVTFTAVLSACSHG 363
Query: 339 ELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFES 398
L+ +G + + M + I+P HY C+ ++ A EAE + KM ++ +
Sbjct: 364 GLVEKGLEIYENMKKDHGIEPRLEHYGCIVDMLGRAGKLAEAENFILKM-----HVKPNA 418
Query: 399 IMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELM 458
+ +LL C+ + ER+ + + P+ Y L N+YA AGQW+ + +R++M
Sbjct: 419 PILGALLGACKIYKNTEVAERVGNMLIKVKPEHSGYYVLLSNIYACAGQWDKIESLRDMM 478
Query: 459 KKRRMGRMPGCRLVDLKEVVEKLKVG 484
K++ + + PG L+++ + K +G
Sbjct: 479 KEKLVKKPPGWSLIEIDGKINKFTMG 504
Score = 47.4 bits (111), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 52/247 (21%), Positives = 107/247 (43%), Gaps = 29/247 (11%)
Query: 224 SVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDL------YSK-CQKVEVAQRV 276
++L +C + F++ + +HG+ +RT L ++ + + L+ L ++K + A +
Sbjct: 17 ALLQSC---SSFSDLKIIHGFLLRTHLISDVFVASRLLALCVDDSTFNKPTNLLGYAYGI 73
Query: 277 FDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACV 336
F + + NL +N +I +P + +T ++ I PD ITF +I A
Sbjct: 74 FSQIQNPNLFVFNLLIRCFSTGAEPSKAFGFYTQMLK-----SRIWPDNITFPFLIKASS 128
Query: 337 RAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSF 396
E + G + Q++ F + + + ++YA A I + M F
Sbjct: 129 EMECVLVGEQTHSQIVRF-GFQNDVYVENSLVHMYANCGFIAAAGRIFGQ-------MGF 180
Query: 397 ESIM-WVSLLS-LCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARV 454
++ W S+++ C+ MVE + F +M ++ + ++N YA +E +
Sbjct: 181 RDVVSWTSMVAGYCK----CGMVENAREMFDEMPHRNLFTWSIMINGYAKNNCFEKAIDL 236
Query: 455 RELMKKR 461
E MK+
Sbjct: 237 FEFMKRE 243
Score = 46.2 bits (108), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 26/115 (22%), Positives = 56/115 (48%), Gaps = 1/115 (0%)
Query: 35 GSPDYTVLVFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLF 94
G + + VF+ + + +++IK + + + ++ QMI GF+P TF ++
Sbjct: 298 GDIEKAIHVFEGLPETDSLSWSSIIKGLAVHGHAHKAMHYFSQMISLGFIPRDVTFTAVL 357
Query: 95 GSCAKTGCVERG-GMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQM 148
+C+ G VE+G + + +G++ L +++M G G + A N ++M
Sbjct: 358 SACSHGGLVEKGLEIYENMKKDHGIEPRLEHYGCIVDMLGRAGKLAEAENFILKM 412
>sp|Q9FFG8|PP417_ARATH Pentatricopeptide repeat-containing protein At5g44230
OS=Arabidopsis thaliana GN=PCMP-H17 PE=2 SV=1
Length = 657
Score = 254 bits (648), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 145/477 (30%), Positives = 247/477 (51%), Gaps = 16/477 (3%)
Query: 1 MKQLLQIQAHLITSGLFFNNSFWTINLLKHSADFGSP--DYTVLVFKCINNPGTFCVNAV 58
+ Q+ QI H++ GL + + L++ G P Y V + + F AV
Sbjct: 62 LNQIKQIHGHVLRKGLD-QSCYILTKLIRTLTKLGVPMDPYARRVIEPVQFRNPFLWTAV 120
Query: 59 IKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALK-NG 117
I+ Y+ D+ + Y M K P S+TF +L +C + G H + G
Sbjct: 121 IRGYAIEGKFDEAIAMYGCMRKEEITPVSFTFSALLKACGTMKDLNLGRQFHAQTFRLRG 180
Query: 118 VDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFD 177
F + V N++I+MY ++DCAR +F +M RD+ISW +++ + R G+M A ELF+
Sbjct: 181 FCF-VYVGNTMIDMYVKCESIDCARKVFDEMPERDVISWTELIAAYARVGNMECAAELFE 239
Query: 178 IMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNE 237
+P +++V+W M++G++++ P +L+ F M KSG R ++ T+A ++AC +
Sbjct: 240 SLPTKDMVAWTAMVTGFAQNAKPQEALEYFDRMEKSGIRADEVTVAGYISACAQLGASKY 299
Query: 238 GRSVHGYTVRTSLKP--NIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGH 295
++ P ++++ +ALID+YSKC VE A VF SM ++N+ +++MILG
Sbjct: 300 ADRAVQIAQKSGYSPSDHVVIGSALIDMYSKCGNVEEAVNVFMSMNNKNVFTYSSMILGL 359
Query: 296 CIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFY 355
HG+ +E + LF +V T I P+ +TF+G + AC + L+ +GR+ F M +
Sbjct: 360 ATHGRAQEALHLFHYMVTQT----EIKPNTVTFVGALMACSHSGLVDQGRQVFDSMYQTF 415
Query: 356 KIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVA 415
++P HY CM +L +EA E+++ M ++ +W +LL CR
Sbjct: 416 GVQPTRDHYTCMVDLLGRTGRLQEALELIKTM-----SVEPHGGVWGALLGACRIHNNPE 470
Query: 416 MVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLV 472
+ E A+ +++P Y L NVYA AG W V RVR+L+K++ + + P V
Sbjct: 471 IAEIAAEHLFELEPDIIGNYILLSNVYASAGDWGGVLRVRKLIKEKGLKKTPAVSWV 527
>sp|Q9FND7|PP410_ARATH Putative pentatricopeptide repeat-containing protein At5g40405
OS=Arabidopsis thaliana GN=PCMP-H14 PE=3 SV=1
Length = 612
Score = 253 bits (645), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 144/487 (29%), Positives = 254/487 (52%), Gaps = 15/487 (3%)
Query: 2 KQLLQIQAHLITSGLFFNNSFWTINLLKHSA--DFGSPDYTVLVFKCINNPGTFCVNAVI 59
K++ QI A L G ++ + +K A D DY + P F +N++I
Sbjct: 20 KEVRQIHAKLYVDGTLKDDHL-VGHFVKAVALSDHKYLDYANQILDRSEKPTLFALNSMI 78
Query: 60 KAYSNSCVPDQGVVFYLQMIKNG--FMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNG 117
+A+ S VP++ FY +++ +G P++YT L +C E G HG+ ++ G
Sbjct: 79 RAHCKSPVPEKSFDFYRRILSSGNDLKPDNYTVNFLVQACTGLRMRETGLQVHGMTIRRG 138
Query: 118 VDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFD 177
D + V LI++Y G +D +F + D + ++V+ R GD+ A +LF+
Sbjct: 139 FDNDPHVQTGLISLYAELGCLDSCHKVFNSIPCPDFVCRTAMVTACARCGDVVFARKLFE 198
Query: 178 IMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNE 237
MPER+ ++WN MISGY++ G +L +F M G + N M SVL+AC + ++
Sbjct: 199 GMPERDPIAWNAMISGYAQVGESREALNVFHLMQLEGVKVNGVAMISVLSACTQLGALDQ 258
Query: 238 GRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCI 297
GR H Y R +K + L T L+DLY+KC +E A VF M ++N+ W++ + G +
Sbjct: 259 GRWAHSYIERNKIKITVRLATTLVDLYAKCGDMEKAMEVFWGMEEKNVYTWSSALNGLAM 318
Query: 298 HGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKI 357
+G E+ ++LF+ + ++P+ +TF+ V+ C + EG+++F M + + I
Sbjct: 319 NGFGEKCLELFSLMKQ-----DGVTPNAVTFVSVLRGCSVVGFVDEGQRHFDSMRNEFGI 373
Query: 358 KPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMV 417
+P HY C+ +LYA A E+A I+++MP M + +W SLL R + +
Sbjct: 374 EPQLEHYGCLVDLYARAGRLEDAVSIIQQMP-----MKPHAAVWSSLLHASRMYKNLELG 428
Query: 418 ERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLKEV 477
+K ++++ + Y L N+YA + W++V+ VR+ MK + + + PGC ++++
Sbjct: 429 VLASKKMLELETANHGAYVLLSNIYADSNDWDNVSHVRQSMKSKGVRKQPGCSVMEVNGE 488
Query: 478 VEKLKVG 484
V + VG
Sbjct: 489 VHEFFVG 495
>sp|Q9C501|PPR70_ARATH Pentatricopeptide repeat-containing protein At1g33350
OS=Arabidopsis thaliana GN=PCMP-E57 PE=2 SV=1
Length = 538
Score = 246 bits (629), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 142/487 (29%), Positives = 251/487 (51%), Gaps = 14/487 (2%)
Query: 1 MKQLLQIQAHLITSGLFFNNSFWTINLLKH-SADFGSPDYTVLVFKCINNPGTFCVNAVI 59
+ L Q+Q+ +I SGL ++ F LL+ + + Y +F + P T AV+
Sbjct: 37 LNHLKQVQSFMIVSGLS-HSHFLCFKLLRFCTLRLCNLSYARFIFDRFSFPNTHLYAAVL 95
Query: 60 KAYSNSCVPDQGVVF-YLQMIKNGFMP--NSYTFVSLFGSCAKTGCVERGGMCHGLALKN 116
AYS+S F + +++ N +P N + + + S + H K+
Sbjct: 96 TAYSSSLPLHASSAFSFFRLMVNRSVPRPNHFIYPLVLKSTPYLSSAFSTPLVHTHLFKS 155
Query: 117 GVDFELPVMNSLINMYGC-FGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHEL 175
G + V +L++ Y + AR +F +MS R+++SW +++SG+ RSGD+S A L
Sbjct: 156 GFHLYVVVQTALLHSYASSVSHITLARQLFDEMSERNVVSWTAMLSGYARSGDISNAVAL 215
Query: 176 FDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMM-KSGFRGNDKTMASVLTACGRSAR 234
F+ MPER+V SWN +++ +++G ++ LFR M+ + R N+ T+ VL+AC ++
Sbjct: 216 FEDMPERDVPSWNAILAACTQNGLFLEAVSLFRRMINEPSIRPNEVTVVCVLSACAQTGT 275
Query: 235 FNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILG 294
+ +H + R L ++ + +L+DLY KC +E A VF + ++L WN+MI
Sbjct: 276 LQLAKGIHAFAYRRDLSSDVFVSNSLVDLYGKCGNLEEASSVFKMASKKSLTAWNSMINC 335
Query: 295 HCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDF 354
+HG+ EE I +F ++ + I PD ITFIG++ AC L+++GR YF M +
Sbjct: 336 FALHGRSEEAIAVFEEMMKLNI--NDIKPDHITFIGLLNACTHGGLVSKGRGYFDLMTNR 393
Query: 355 YKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAV 414
+ I+P HY C+ +L A +EA E++ M M + +W SLL+ C+ G +
Sbjct: 394 FGIEPRIEHYGCLIDLLGRAGRFDEALEVMSTM-----KMKADEAIWGSLLNACKIHGHL 448
Query: 415 AMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDL 474
+ E K+ V ++P + + N+Y G WE+ R R+++K + + PG +++
Sbjct: 449 DLAEVAVKNLVALNPNNGGYVAMMANLYGEMGNWEEARRARKMIKHQNAYKPPGWSRIEI 508
Query: 475 KEVVEKL 481
V +
Sbjct: 509 DNEVHQF 515
>sp|Q9SHZ8|PP168_ARATH Pentatricopeptide repeat-containing protein At2g22070
OS=Arabidopsis thaliana GN=PCMP-H41 PE=3 SV=1
Length = 786
Score = 246 bits (628), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 139/454 (30%), Positives = 243/454 (53%), Gaps = 16/454 (3%)
Query: 35 GSPDYTVLVFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFM-PNSYTFVSL 93
G D + F+ + N++I ++ + + + +M+++ + P+ +T S+
Sbjct: 226 GQMDLAMAQFEQMAERDIVTWNSMISGFNQRGYDLRALDIFSKMLRDSLLSPDRFTLASV 285
Query: 94 FGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDL 153
+CA + G H + G D V+N+LI+MY G ++ AR + Q +DL
Sbjct: 286 LSACANLEKLCIGKQIHSHIVTTGFDISGIVLNALISMYSRCGGVETARRLIEQRGTKDL 345
Query: 154 I--SWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMM 211
+ +++ G+++ GDM+ A +F + +R+VV+W MI GY + G+ G ++ LFR M+
Sbjct: 346 KIEGFTALLDGYIKLGDMNQAKNIFVSLKDRDVVAWTAMIVGYEQHGSYGEAINLFRSMV 405
Query: 212 KSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVE 271
G R N T+A++L+ A + G+ +HG V++ ++ + ALI +Y+K +
Sbjct: 406 GGGQRPNSYTLAAMLSVASSLASLSHGKQIHGSAVKSGEIYSVSVSNALITMYAKAGNIT 465
Query: 272 VAQRVFDSM-ADRNLVCWNAMILGHCIHGKPEEGIKLF-TALVNGTVAGGSISPDEITFI 329
A R FD + +R+ V W +MI+ HG EE ++LF T L+ G + PD IT++
Sbjct: 466 SASRAFDLIRCERDTVSWTSMIIALAQHGHAEEALELFETMLMEG------LRPDHITYV 519
Query: 330 GVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPE 389
GV AC A L+ +GR+YF M D KI P +HY CM +L+ A L +EA+E + KMP
Sbjct: 520 GVFSACTHAGLVNQGRQYFDMMKDVDKIIPTLSHYACMVDLFGRAGLLQEAQEFIEKMPI 579
Query: 390 DNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWE 449
+ D + W SLLS CR + + + A+ + ++P++ Y L N+Y+ G+WE
Sbjct: 580 EPD-----VVTWGSLLSACRVHKNIDLGKVAAERLLLLEPENSGAYSALANLYSACGKWE 634
Query: 450 DVARVRELMKKRRMGRMPGCRLVDLKEVVEKLKV 483
+ A++R+ MK R+ + G +++K V V
Sbjct: 635 EAAKIRKSMKDGRVKKEQGFSWIEVKHKVHVFGV 668
Score = 164 bits (414), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 127/490 (25%), Positives = 210/490 (42%), Gaps = 72/490 (14%)
Query: 35 GSPDYTVLVFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLF 94
G D T F + + +I Y N + + M+K G P +T ++
Sbjct: 94 GDMDSTCEFFDQLPQRDSVSWTTMIVGYKNIGQYHKAIRVMGDMVKEGIEPTQFTLTNVL 153
Query: 95 GSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLI 154
S A T C+E G H +K G+ + V NSL+NMY G A+ +F +M RD+
Sbjct: 154 ASVAATRCMETGKKVHSFIVKLGLRGNVSVSNSLLNMYAKCGDPMMAKFVFDRMVVRDIS 213
Query: 155 SWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSG 214
SWN++++ H++ G M A F+ M ER++V+WN MISG+++ G +L +F +M++
Sbjct: 214 SWNAMIALHMQVGQMDLAMAQFEQMAERDIVTWNSMISGFNQRGYDLRALDIFSKMLRDS 273
Query: 215 FRGNDK-TMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVA 273
D+ T+ASVL+AC + G+ +H + V T + I+ ALI +YS+C VE A
Sbjct: 274 LLSPDRFTLASVLSACANLEKLCIGKQIHSHIVTTGFDISGIVLNALISMYSRCGGVETA 333
Query: 274 QR---------------------------------VFDSMADRNLVCWNAMILGHCIHGK 300
+R +F S+ DR++V W AMI+G+ HG
Sbjct: 334 RRLIEQRGTKDLKIEGFTALLDGYIKLGDMNQAKNIFVSLKDRDVVAWTAMIVGYEQHGS 393
Query: 301 PEEGIKLFTALVNG--------------------------TVAGGSISPDEITFIGVICA 334
E I LF ++V G + G ++ EI + V A
Sbjct: 394 YGEAINLFRSMVGGGQRPNSYTLAAMLSVASSLASLSHGKQIHGSAVKSGEIYSVSVSNA 453
Query: 335 CV----RAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPED 390
+ +A +T + F D + + + + M A EEA E+ M
Sbjct: 454 LITMYAKAGNITSASRAF----DLIRCERDTVSWTSMIIALAQHGHAEEALELFETML-- 507
Query: 391 NDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDP--QDFSRYQFLLNVYAVAGQW 448
+ + + I +V + S C G V + D+D S Y +++++ AG
Sbjct: 508 MEGLRPDHITYVGVFSACTHAGLVNQGRQYFDMMKDVDKIIPTLSHYACMVDLFGRAGLL 567
Query: 449 EDVARVRELM 458
++ E M
Sbjct: 568 QEAQEFIEKM 577
Score = 136 bits (343), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 78/272 (28%), Positives = 135/272 (49%), Gaps = 27/272 (9%)
Query: 108 MCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSG 167
+ H +K+G+ F + +MN+L+N+Y G AR +F +M R SWN+++S + + G
Sbjct: 35 LVHCRVIKSGLMFSVYLMNNLMNVYSKTGYALHARKLFDEMPLRTAFSWNTVLSAYSKRG 94
Query: 168 DMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLT 227
DM + E FD +P+R+ VSW MI GY G ++++ +M+K G T+ +VL
Sbjct: 95 DMDSTCEFFDQLPQRDSVSWTTMIVGYKNIGQYHKAIRVMGDMVKEGIEPTQFTLTNVLA 154
Query: 228 ACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVC 287
+ + G+ VH + V+ L+ N+ + +L+++Y+KC +A+ VFD M R++
Sbjct: 155 SVAATRCMETGKKVHSFIVKLGLRGNVSVSNSLLNMYAKCGDPMMAKFVFDRMVVRDISS 214
Query: 288 WNAMILGHCIHGK-----------PEEGIKLFTALVNGTVAGGS---------------- 320
WNAMI H G+ E I + ++++G G
Sbjct: 215 WNAMIALHMQVGQMDLAMAQFEQMAERDIVTWNSMISGFNQRGYDLRALDIFSKMLRDSL 274
Query: 321 ISPDEITFIGVICACVRAELLTEGRKYFRQMI 352
+SPD T V+ AC E L G++ ++
Sbjct: 275 LSPDRFTLASVLSACANLEKLCIGKQIHSHIV 306
>sp|Q8LK93|PP145_ARATH Pentatricopeptide repeat-containing protein At2g02980
OS=Arabidopsis thaliana GN=PCMP-H26 PE=2 SV=2
Length = 603
Score = 246 bits (627), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 152/516 (29%), Positives = 265/516 (51%), Gaps = 53/516 (10%)
Query: 1 MKQLLQIQAHLITSGLFFNNSFWT--INLLKHSADFGSPDYTVLVFKCINNPGTFCVNAV 58
+++L+QIQA+ I S + + SF IN S S Y +F+ ++ P N++
Sbjct: 42 LRELMQIQAYAIKSHIE-DVSFVAKLINFCTESPTESSMSYARHLFEAMSEPDIVIFNSM 100
Query: 59 IKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGV 118
+ YS P + +++++++G +P++YTF SL +CA +E G H L++K G+
Sbjct: 101 ARGYSRFTNPLEVFSLFVEILEDGILPDNYTFPSLLKACAVAKALEEGRQLHCLSMKLGL 160
Query: 119 DFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDI 178
D + V +LINMY +C D+ +A +FD
Sbjct: 161 DDNVYVCPTLINMY-----TECE--------------------------DVDSARCVFDR 189
Query: 179 MPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEG 238
+ E VV +N MI+GY++ P +L LFREM + N+ T+ SVL++C + G
Sbjct: 190 IVEPCVVCYNAMITGYARRNRPNEALSLFREMQGKYLKPNEITLLSVLSSCALLGSLDLG 249
Query: 239 RSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIH 298
+ +H Y + S + ++TALID+++KC ++ A +F+ M ++ W+AMI+ + H
Sbjct: 250 KWIHKYAKKHSFCKYVKVNTALIDMFAKCGSLDDAVSIFEKMRYKDTQAWSAMIVAYANH 309
Query: 299 GKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIK 358
GK E+ + +F + ++ PDEITF+G++ AC + EGRKYF QM+ + I
Sbjct: 310 GKAEKSMLMFERM-----RSENVQPDEITFLGLLNACSHTGRVEEGRKYFSQMVSKFGIV 364
Query: 359 PNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVE 418
P+ HY M +L + A E+A E + K+P +S ++W LL+ C + + E
Sbjct: 365 PSIKHYGSMVDLLSRAGNLEDAYEFIDKLP-----ISPTPMLWRILLAACSSHNNLDLAE 419
Query: 419 RLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLKEVV 478
++++ ++D Y L N+YA +WE V +R++MK R+ ++PGC +++ VV
Sbjct: 420 KVSERIFELDDSHGGDYVILSNLYARNKKWEYVDSLRKVMKDRKAVKVPGCSSIEVNNVV 479
Query: 479 EKLKVGHFWRGGMKEEVNKMMECRQSRSLATVSKQL 514
+ F G+K K+ R+L + K+L
Sbjct: 480 HEF----FSGDGVKSATTKL-----HRALDEMVKEL 506
>sp|Q1PEU4|PP201_ARATH Pentatricopeptide repeat-containing protein At2g44880
OS=Arabidopsis thaliana GN=PCMP-E9 PE=2 SV=2
Length = 555
Score = 245 bits (625), Expect = 6e-64, Method: Compositional matrix adjust.
Identities = 150/498 (30%), Positives = 240/498 (48%), Gaps = 77/498 (15%)
Query: 52 TFCVNAVIKAY-SNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCH 110
+F N++IKAY PD ++ + F P+++TF +L SC+ + CV +G H
Sbjct: 42 SFLSNSMIKAYLETRQYPDSFALYRDLRKETCFAPDNFTFTTLTKSCSLSMCVYQGLQLH 101
Query: 111 GLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGH------- 163
+ G ++ V +++MY FG M CARN F +M R +SW +++SG+
Sbjct: 102 SQIWRFGFCADMYVSTGVVDMYAKFGKMGCARNAFDEMPHRSEVSWTALISGYIRCGELD 161
Query: 164 -------------------------VRSGDMS---------------------------- 170
V+SGDM+
Sbjct: 162 LASKLFDQMPHVKDVVIYNAMMDGFVKSGDMTSARRLFDEMTHKTVITWTTMIHGYCNIK 221
Query: 171 ---AAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMM-KSGFRGNDKTMASVL 226
AA +LFD MPERN+VSWN MI GY ++ P ++LF+EM + +D T+ SVL
Sbjct: 222 DIDAARKLFDAMPERNLVSWNTMIGGYCQNKQPQEGIRLFQEMQATTSLDPDDVTILSVL 281
Query: 227 TACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLV 286
A + + G H + R L + + TA++D+YSKC ++E A+R+FD M ++ +
Sbjct: 282 PAISDTGALSLGEWCHCFVQRKKLDKKVKVCTAILDMYSKCGEIEKAKRIFDEMPEKQVA 341
Query: 287 CWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRK 346
WNAMI G+ ++G + LF ++ PDEIT + VI AC L+ EGRK
Sbjct: 342 SWNAMIHGYALNGNARAALDLFVTMMIEE------KPDEITMLAVITACNHGGLVEEGRK 395
Query: 347 YFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLS 406
+F M + + HY CM +L A +EAE+++ MP + + I+ S LS
Sbjct: 396 WFHVMREM-GLNAKIEHYGCMVDLLGRAGSLKEAEDLITNMPFEPN-----GIILSSFLS 449
Query: 407 LCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRM 466
C + ER+ K V+++PQ+ Y L N+YA +W+D V+ +M+K + +
Sbjct: 450 ACGQYKDIERAERILKKAVELEPQNDGNYVLLRNLYAADKRWDDFGMVKNVMRKNQAKKE 509
Query: 467 PGCRLVDLKEVVEKLKVG 484
GC L+++ +V + G
Sbjct: 510 VGCSLIEINYIVSEFISG 527
Score = 66.6 bits (161), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 54/222 (24%), Positives = 100/222 (45%), Gaps = 15/222 (6%)
Query: 172 AHELFDIMPERN-VVSWNIMISGYSKSGNPGCSLKLFREMMKSG-FRGNDKTMASVLTAC 229
A +LFD P+R+ N MI Y ++ S L+R++ K F ++ T ++ +C
Sbjct: 29 ARKLFDQRPQRDDSFLSNSMIKAYLETRQYPDSFALYRDLRKETCFAPDNFTFTTLTKSC 88
Query: 230 GRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWN 289
S +G +H R ++ + T ++D+Y+K K+ A+ FD M R+ V W
Sbjct: 89 SLSMCVYQGLQLHSQIWRFGFCADMYVSTGVVDMYAKFGKMGCARNAFDEMPHRSEVSWT 148
Query: 290 AMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFR 349
A+I G+ G+ + KLF + + D + + ++ V++ +T R+ F
Sbjct: 149 ALISGYIRCGELDLASKLFDQMPH--------VKDVVIYNAMMDGFVKSGDMTSARRLFD 200
Query: 350 QMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDN 391
+M I + M + Y + + A ++ MPE N
Sbjct: 201 EMTHKTVIT-----WTTMIHGYCNIKDIDAARKLFDAMPERN 237
>sp|P93011|PP182_ARATH Pentatricopeptide repeat-containing protein At2g33760
OS=Arabidopsis thaliana GN=PCMP-H6 PE=3 SV=1
Length = 583
Score = 244 bits (624), Expect = 9e-64, Method: Compositional matrix adjust.
Identities = 135/475 (28%), Positives = 245/475 (51%), Gaps = 38/475 (8%)
Query: 1 MKQLLQIQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIK 60
+KQL Q+ AHLI +G + S T L+ + + YT L+F + P F N+VIK
Sbjct: 22 VKQLQQVHAHLIVTGYGRSRSLLT-KLITLACSARAIAYTHLLFLSVPLPDDFLFNSVIK 80
Query: 61 AYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDF 120
+ S +P V +Y +M+ + P++YTF S+ SCA + G H A+ +G
Sbjct: 81 STSKLRLPLHCVAYYRRMLSSNVSPSNYTFTSVIKSCADLSALRIGKGVHCHAVVSGFGL 140
Query: 121 ELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMP 180
+ V +L+ Y + GDM A ++FD MP
Sbjct: 141 DTYVQAALVTFYS-------------------------------KCGDMEGARQVFDRMP 169
Query: 181 ERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRS 240
E+++V+WN ++SG+ ++G ++++F +M +SGF + T S+L+AC ++ + G
Sbjct: 170 EKSIVAWNSLVSGFEQNGLADEAIQVFYQMRESGFEPDSATFVSLLSACAQTGAVSLGSW 229
Query: 241 VHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGK 300
VH Y + L N+ L TALI+LYS+C V A+ VFD M + N+ W AMI + HG
Sbjct: 230 VHQYIISEGLDLNVKLGTALINLYSRCGDVGKAREVFDKMKETNVAAWTAMISAYGTHGY 289
Query: 301 PEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPN 360
++ ++LF + + G I P+ +TF+ V+ AC A L+ EGR +++M Y++ P
Sbjct: 290 GQQAVELFNKMEDDC---GPI-PNNVTFVAVLSACAHAGLVEEGRSVYKRMTKSYRLIPG 345
Query: 361 FAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERL 420
H+ CM ++ A +EA + + ++ D + +W ++L C+ + +
Sbjct: 346 VEHHVCMVDMLGRAGFLDEAYKFIHQL--DATGKATAPALWTAMLGACKMHRNYDLGVEI 403
Query: 421 AKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLK 475
AK + ++P + + L N+YA++G+ ++V+ +R+ M + + + G +++++
Sbjct: 404 AKRLIALEPDNPGHHVMLSNIYALSGKTDEVSHIRDGMMRNNLRKQVGYSVIEVE 458
>sp|Q9SR01|PP212_ARATH Pentatricopeptide repeat-containing protein At3g04750,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-E81 PE=2
SV=1
Length = 661
Score = 244 bits (624), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 147/474 (31%), Positives = 238/474 (50%), Gaps = 17/474 (3%)
Query: 1 MKQLLQIQAHLITSG-LFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVI 59
+ ++ QI H+I SG L N W +L+K + G+ VF + +P N +I
Sbjct: 146 LSEVKQIHCHIIVSGCLSLGNYLWN-SLVKFYMELGNFGVAEKVFARMPHPDVSSFNVMI 204
Query: 60 KAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVD 119
Y+ + + Y +M+ +G P+ YT +SL C + G HG + G
Sbjct: 205 VGYAKQGFSLEALKLYFKMVSDGIEPDEYTVLSLLVCCGHLSDIRLGKGVHGWIERRGPV 264
Query: 120 FE--LPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFD 177
+ L + N+L++MY A+ F M +D+ SWN++V G VR GDM AA +FD
Sbjct: 265 YSSNLILSNALLDMYFKCKESGLAKRAFDAMKKKDMRSWNTMVVGFVRLGDMEAAQAVFD 324
Query: 178 IMPERNVVSWNIMISGYSKSGNPGCSLK-LFREM-MKSGFRGNDKTMASVLTACGRSARF 235
MP+R++VSWN ++ GYSK G +++ LF EM + + + TM S+++ +
Sbjct: 325 QMPKRDLVSWNSLLFGYSKKGCDQRTVRELFYEMTIVEKVKPDRVTMVSLISGAANNGEL 384
Query: 236 NEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGH 295
+ GR VHG +R LK + L +ALID+Y KC +E A VF + ++++ W +MI G
Sbjct: 385 SHGRWVHGLVIRLQLKGDAFLSSALIDMYCKCGIIERAFMVFKTATEKDVALWTSMITGL 444
Query: 296 CIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFY 355
HG ++ ++LF G + ++P+ +T + V+ AC + L+ EG F M D +
Sbjct: 445 AFHGNGQQALQLF-----GRMQEEGVTPNNVTLLAVLTACSHSGLVEEGLHVFNHMKDKF 499
Query: 356 KIKPNFAHYWCMANLYAGAELTEEAEEIL-RKMPEDNDNMSFESIMWVSLLSLCRFQGAV 414
P HY + +L A EEA++I+ +KMP M MW S+LS CR +
Sbjct: 500 GFDPETEHYGSLVDLLCRAGRVEEAKDIVQKKMP-----MRPSQSMWGSILSACRGGEDI 554
Query: 415 AMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPG 468
E + ++P+ Y L N+YA G+W + RE M+ R + + G
Sbjct: 555 ETAELALTELLKLEPEKEGGYVLLSNIYATVGRWGYSDKTREAMENRGVKKTAG 608
>sp|Q9MAT2|PPR10_ARATH Pentatricopeptide repeat-containing protein At1g04840
OS=Arabidopsis thaliana GN=PCMP-H64 PE=2 SV=1
Length = 665
Score = 244 bits (623), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 143/518 (27%), Positives = 256/518 (49%), Gaps = 47/518 (9%)
Query: 4 LLQIQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAYS 63
L + A ++ G+ +S L+ S+ SPDY++ +F+ F +NA+I+ +
Sbjct: 45 LRHVHAQILRRGVL--SSRVAAQLVSCSSLLKSPDYSLSIFRNSEERNPFVLNALIRGLT 102
Query: 64 NSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELP 123
+ + V ++ M++ G P+ TF + S +K G G H LKN VD +
Sbjct: 103 ENARFESSVRHFILMLRLGVKPDRLTFPFVLKSNSKLGFRWLGRALHAATLKNFVDCDSF 162
Query: 124 VMNSLINMYGCFGA-----------------------------------MDCARNMFVQM 148
V SL++MY G M A +F M
Sbjct: 163 VRLSLVDMYAKTGQLKHAFQVFEESPDRIKKESILIWNVLINGYCRAKDMHMATTLFRSM 222
Query: 149 SPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFR 208
R+ SW++++ G+V SG+++ A +LF++MPE+NVVSW +I+G+S++G+ ++ +
Sbjct: 223 PERNSGSWSTLIKGYVDSGELNRAKQLFELMPEKNVVSWTTLINGFSQTGDYETAISTYF 282
Query: 209 EMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQ 268
EM++ G + N+ T+A+VL+AC +S G +HGY + +K + + TAL+D+Y+KC
Sbjct: 283 EMLEKGLKPNEYTIAAVLSACSKSGALGSGIRIHGYILDNGIKLDRAIGTALVDMYAKCG 342
Query: 269 KVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITF 328
+++ A VF +M ++++ W AMI G +HG+ + I+ F ++ PDE+ F
Sbjct: 343 ELDCAATVFSNMNHKDILSWTAMIQGWAVHGRFHQAIQCFRQMMY-----SGEKPDEVVF 397
Query: 329 IGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMP 388
+ V+ AC+ + + G +F M Y I+P HY + +L A EA E++ MP
Sbjct: 398 LAVLTACLNSSEVDLGLNFFDSMRLDYAIEPTLKHYVLVVDLLGRAGKLNEAHELVENMP 457
Query: 389 EDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQW 448
+ D + W +L C+ E ++++ +++DP+ Y FL +A G
Sbjct: 458 INPDLTT-----WAALYRACKAHKGYRRAESVSQNLLELDPELCGSYIFLDKTHASKGNI 512
Query: 449 EDVARVRELMKKRRMGRMPGCRLVDLKEVVEKLKVGHF 486
+DV + R ++KR R G ++L + K G +
Sbjct: 513 QDVEKRRLSLQKRIKERSLGWSYIELDGQLNKFSAGDY 550
>sp|O23337|PP311_ARATH Pentatricopeptide repeat-containing protein At4g14820
OS=Arabidopsis thaliana GN=PCMP-H3 PE=2 SV=1
Length = 722
Score = 243 bits (620), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 130/454 (28%), Positives = 234/454 (51%), Gaps = 10/454 (2%)
Query: 20 NSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMI 79
+ F + A G +Y VF +++ N +I+ Y + D+ + +M
Sbjct: 145 DPFVETGFMDMYASCGRINYARNVFDEMSHRDVVTWNTMIERYCRFGLVDEAFKLFEEMK 204
Query: 80 KNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMD 139
+ MP+ ++ +C +TG + + ++N V + ++ +L+ MY G MD
Sbjct: 205 DSNVMPDEMILCNIVSACGRTGNMRYNRAIYEFLIENDVRMDTHLLTALVTMYAGAGCMD 264
Query: 140 CARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGN 199
AR F +MS R+L ++VSG+ + G + A +FD ++++V W MIS Y +S
Sbjct: 265 MAREFFRKMSVRNLFVSTAMVSGYSKCGRLDDAQVIFDQTEKKDLVCWTTMISAYVESDY 324
Query: 200 PGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTA 259
P +L++F EM SG + + +M SV++AC ++ + VH L+ + ++ A
Sbjct: 325 PQEALRVFEEMCCSGIKPDVVSMFSVISACANLGILDKAKWVHSCIHVNGLESELSINNA 384
Query: 260 LIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGG 319
LI++Y+KC ++ + VF+ M RN+V W++MI +HG+ + + LF + V
Sbjct: 385 LINMYAKCGGLDATRDVFEKMPRRNVVSWSSMINALSMHGEASDALSLFARMKQENV--- 441
Query: 320 SISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEE 379
P+E+TF+GV+ C + L+ EG+K F M D Y I P HY CM +L+ A L E
Sbjct: 442 --EPNEVTFVGVLYGCSHSGLVEEGKKIFASMTDEYNITPKLEHYGCMVDLFGRANLLRE 499
Query: 380 AEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLL 439
A E++ MP ++ ++W SL+S CR G + + + AK ++++P +
Sbjct: 500 ALEVIESMP-----VASNVVIWGSLMSACRIHGELELGKFAAKRILELEPDHDGALVLMS 554
Query: 440 NVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVD 473
N+YA +WEDV +R +M+++ + + G +D
Sbjct: 555 NIYAREQRWEDVRNIRRVMEEKNVFKEKGLSRID 588
Score = 133 bits (334), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 93/403 (23%), Positives = 192/403 (47%), Gaps = 25/403 (6%)
Query: 39 YTVLVFKCINNPGTFCV-NAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSC 97
Y + VF I +P V N ++ S S P ++FY ++ G + ++F+ + +
Sbjct: 62 YALNVFSSIPSPPESIVFNPFLRDLSRSSEPRATILFYQRIRHVGGRLDQFSFLPILKAV 121
Query: 98 AKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWN 157
+K + G HG+A K + V ++MY G ++ ARN+F +MS RD+++WN
Sbjct: 122 SKVSALFEGMELHGVAFKIATLCDPFVETGFMDMYASCGRINYARNVFDEMSHRDVVTWN 181
Query: 158 SIVSGHVRSGDMSAAHELFDIMPERNVVSWNI----MISGYSKSGNPGCSLKLFREMMKS 213
+++ + R G + A +LF+ M + NV+ + ++S ++GN + ++ ++++
Sbjct: 182 TMIERYCRFGLVDEAFKLFEEMKDSNVMPDEMILCNIVSACGRTGNMRYNRAIYEFLIEN 241
Query: 214 GFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVA 273
R + + +++T + + R + + S++ N+ + TA++ YSKC +++ A
Sbjct: 242 DVRMDTHLLTALVTMYAGAGCMDMARE---FFRKMSVR-NLFVSTAMVSGYSKCGRLDDA 297
Query: 274 QRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVIC 333
Q +FD ++LVCW MI + P+E +++F + I PD ++ VI
Sbjct: 298 QVIFDQTEKKDLVCWTTMISAYVESDYPQEALRVFEEM-----CCSGIKPDVVSMFSVIS 352
Query: 334 ACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDN 393
AC +L + K+ I ++ + + N+YA + ++ KMP N
Sbjct: 353 ACANLGILDKA-KWVHSCIHVNGLESELSINNALINMYAKCGGLDATRDVFEKMPRRN-- 409
Query: 394 MSFESIMWVSLLSLCRFQG----AVAMVERLAKSFVDMDPQDF 432
+ W S+++ G A+++ R+ + V+ + F
Sbjct: 410 ----VVSWSSMINALSMHGEASDALSLFARMKQENVEPNEVTF 448
Score = 94.4 bits (233), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 69/280 (24%), Positives = 127/280 (45%), Gaps = 18/280 (6%)
Query: 180 PERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGR 239
P ++V +N + S+S P ++ ++ + G R + + +L A + + EG
Sbjct: 73 PPESIV-FNPFLRDLSRSSEPRATILFYQRIRHVGGRLDQFSFLPILKAVSKVSALFEGM 131
Query: 240 SVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHG 299
+HG + + + ++T +D+Y+ C ++ A+ VFD M+ R++V WN MI +C G
Sbjct: 132 ELHGVAFKIATLCDPFVETGFMDMYASCGRINYARNVFDEMSHRDVVTWNTMIERYCRFG 191
Query: 300 KPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKP 359
+E KLF + + V PDE+ ++ AC R + R + +I+ ++
Sbjct: 192 LVDEAFKLFEEMKDSNVM-----PDEMILCNIVSACGRTGNMRYNRAIYEFLIE-NDVRM 245
Query: 360 NFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLC-RFQGAVAMVE 418
+ + +YAGA + A E RKM N F S VS S C R A + +
Sbjct: 246 DTHLLTALVTMYAGAGCMDMAREFFRKMSVRN---LFVSTAMVSGYSKCGRLDDAQVIFD 302
Query: 419 RLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELM 458
+ K +D + +++ Y + ++ RV E M
Sbjct: 303 QTEK-------KDLVCWTTMISAYVESDYPQEALRVFEEM 335
>sp|Q9LS72|PP261_ARATH Pentatricopeptide repeat-containing protein At3g29230
OS=Arabidopsis thaliana GN=PCMP-E27 PE=2 SV=1
Length = 600
Score = 243 bits (619), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 149/512 (29%), Positives = 243/512 (47%), Gaps = 76/512 (14%)
Query: 38 DYTVLVFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSC 97
+ V VF + P N++I+A++ + P Q + +M + G +++T+ L +C
Sbjct: 68 NLAVRVFNQVQEPNVHLCNSLIRAHAQNSQPYQAFFVFSEMQRFGLFADNFTYPFLLKAC 127
Query: 98 AKTGCVERGGMCHGLALKNGVDFELPVMNSLINMY---GCFGAMDC-------------- 140
+ + M H K G+ ++ V N+LI+ Y G G D
Sbjct: 128 SGQSWLPVVKMMHNHIEKLGLSSDIYVPNALIDCYSRCGGLGVRDAMKLFEKMSERDTVS 187
Query: 141 ----------------ARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNV 184
AR +F +M RDLISWN+++ G+ R +MS A ELF+ MPERN
Sbjct: 188 WNSMLGGLVKAGELRDARRLFDEMPQRDLISWNTMLDGYARCREMSKAFELFEKMPERNT 247
Query: 185 VSWNIMISGYSKSGN-------------PGCSL--------------------KLFREMM 211
VSW+ M+ GYSK+G+ P ++ +L +M+
Sbjct: 248 VSWSTMVMGYSKAGDMEMARVMFDKMPLPAKNVVTWTIIIAGYAEKGLLKEADRLVDQMV 307
Query: 212 KSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVE 271
SG + + + S+L AC S + G +H R++L N + AL+D+Y+KC ++
Sbjct: 308 ASGLKFDAAAVISILAACTESGLLSLGMRIHSILKRSNLGSNAYVLNALLDMYAKCGNLK 367
Query: 272 VAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGV 331
A VF+ + ++LV WN M+ G +HG +E I+LF+ + I PD++TFI V
Sbjct: 368 KAFDVFNDIPKKDLVSWNTMLHGLGVHGHGKEAIELFSRMRR-----EGIRPDKVTFIAV 422
Query: 332 ICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDN 391
+C+C A L+ EG YF M Y + P HY C+ +L +EA ++++ MP
Sbjct: 423 LCSCNHAGLIDEGIDYFYSMEKVYDLVPQVEHYGCLVDLLGRVGRLKEAIKVVQTMP--- 479
Query: 392 DNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDV 451
M ++W +LL CR V + + + + V +DP D Y L N+YA A WE V
Sbjct: 480 --MEPNVVIWGALLGACRMHNEVDIAKEVLDNLVKLDPCDPGNYSLLSNIYAAAEDWEGV 537
Query: 452 ARVRELMKKRRMGRMPGCRLVDLKEVVEKLKV 483
A +R MK + + G V+L++ + + V
Sbjct: 538 ADIRSKMKSMGVEKPSGASSVELEDGIHEFTV 569
Score = 43.5 bits (101), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 49/234 (20%), Positives = 98/234 (41%), Gaps = 19/234 (8%)
Query: 231 RSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNA 290
+ A N+ + +H +R +L ++ + LI S C++ +A RVF+ + + N+ N+
Sbjct: 28 KCANLNQVKQLHAQIIRRNLHEDLHIAPKLISALSLCRQTNLAVRVFNQVQEPNVHLCNS 87
Query: 291 MILGHCIHGKPEEGIKLFTALVN-GTVAGGSISPDEITFIGVICACVRAELLTEGRKYFR 349
+I H + +P + +F+ + G A D T+ ++ AC L K
Sbjct: 88 LIRAHAQNSQPYQAFFVFSEMQRFGLFA------DNFTYPFLLKACSGQSWLPV-VKMMH 140
Query: 350 QMIDFYKIKPNFAHYWCMANLYA--GAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSL 407
I+ + + + + Y+ G +A ++ KM E +++ W S+L
Sbjct: 141 NHIEKLGLSSDIYVPNALIDCYSRCGGLGVRDAMKLFEKMSER------DTVSWNSMLGG 194
Query: 408 CRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKR 461
G + RL F +M +D + +L+ YA + + E M +R
Sbjct: 195 LVKAGELRDARRL---FDEMPQRDLISWNTMLDGYARCREMSKAFELFEKMPER 245
>sp|Q9LXF2|PP385_ARATH Pentatricopeptide repeat-containing protein At5g15300
OS=Arabidopsis thaliana GN=PCMP-E40 PE=2 SV=2
Length = 548
Score = 242 bits (617), Expect = 6e-63, Method: Compositional matrix adjust.
Identities = 155/512 (30%), Positives = 245/512 (47%), Gaps = 52/512 (10%)
Query: 1 MKQLLQIQAHLITSGLFFNNSFWTINLLKHSADFGSP---DYTVLVFKCINNPGTFCVNA 57
++ L QI A ++ +GL N S + L +SA P Y +F I P N
Sbjct: 25 IRTLKQIHASMVVNGLMSNLS--VVGELIYSASLSVPGALKYAHKLFDEIPKPDVSICNH 82
Query: 58 VIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNG 117
V++ + S P++ V Y +M K G P+ YTF + +C+K G HG +++G
Sbjct: 83 VLRGSAQSMKPEKTVSLYTEMEKRGVSPDRYTFTFVLKACSKLEWRSNGFAFHGKVVRHG 142
Query: 118 VDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFD 177
V N+LI + G + A +F + ++W+S+ SG+ + G + A LFD
Sbjct: 143 FVLNEYVKNALILFHANCGDLGIASELFDDSAKAHKVAWSSMTSGYAKRGKIDEAMRLFD 202
Query: 178 IMPERNVVSWNI-------------------------------MISGYSKSGNPGCSLKL 206
MP ++ V+WN+ MISGY G P +L +
Sbjct: 203 EMPYKDQVAWNVMITGCLKCKEMDSARELFDRFTEKDVVTWNAMISGYVNCGYPKEALGI 262
Query: 207 FREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRT-SLKPNIILDT----ALI 261
F+EM +G + T+ S+L+AC G+ +H Y + T S+ +I + T ALI
Sbjct: 263 FKEMRDAGEHPDVVTILSLLSACAVLGDLETGKRLHIYILETASVSSSIYVGTPIWNALI 322
Query: 262 DLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSI 321
D+Y+KC ++ A VF + DR+L WN +I+G +H E I++F + V
Sbjct: 323 DMYAKCGSIDRAIEVFRGVKDRDLSTWNTLIVGLALH-HAEGSIEMFEEMQRLKVW---- 377
Query: 322 SPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAE 381
P+E+TFIGVI AC + + EGRKYF M D Y I+PN HY CM ++ A EEA
Sbjct: 378 -PNEVTFIGVILACSHSGRVDEGRKYFSLMRDMYNIEPNIKHYGCMVDMLGRAGQLEEAF 436
Query: 382 EILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNV 441
+ M + +I+W +LL C+ G V + + + + M + Y L N+
Sbjct: 437 MFVESM-----KIEPNAIVWRTLLGACKIYGNVELGKYANEKLLSMRKDESGDYVLLSNI 491
Query: 442 YAVAGQWEDVARVRELMKKRRMGRMPGCRLVD 473
YA GQW+ V +VR++ R+ + G L++
Sbjct: 492 YASTGQWDGVQKVRKMFDDTRVKKPTGVSLIE 523
>sp|Q9LUJ2|PP249_ARATH Pentatricopeptide repeat-containing protein At3g22690
OS=Arabidopsis thaliana GN=PCMP-H56 PE=2 SV=1
Length = 842
Score = 241 bits (615), Expect = 9e-63, Method: Compositional matrix adjust.
Identities = 134/431 (31%), Positives = 231/431 (53%), Gaps = 13/431 (3%)
Query: 56 NAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALK 115
NA+ Y + + + + M+ +G P+ + +S SC++ + G CHG L+
Sbjct: 306 NAMASNYVRQGLTREALGVFNLMMDSGVRPDRISMLSAISSCSQLRNILWGKSCHGYVLR 365
Query: 116 NGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHEL 175
NG + + N+LI+MY D A +F +MS + +++WNSIV+G+V +G++ AA E
Sbjct: 366 NGFESWDNICNALIDMYMKCHRQDTAFRIFDRMSNKTVVTWNSIVAGYVENGEVDAAWET 425
Query: 176 FDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMM-KSGFRGNDKTMASVLTACGRSAR 234
F+ MPE+N+VSWN +ISG + ++++F M + G + TM S+ +ACG
Sbjct: 426 FETMPEKNIVSWNTIISGLVQGSLFEEAIEVFCSMQSQEGVNADGVTMMSIASACGHLGA 485
Query: 235 FNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILG 294
+ + ++ Y + ++ ++ L T L+D++S+C E A +F+S+ +R++ W A I
Sbjct: 486 LDLAKWIYYYIEKNGIQLDVRLGTTLVDMFSRCGDPESAMSIFNSLTNRDVSAWTAAIGA 545
Query: 295 HCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDF 354
+ G E I+LF ++ + PD + F+G + AC L+ +G++ F M+
Sbjct: 546 MAMAGNAERAIELFDDMIE-----QGLKPDGVAFVGALTACSHGGLVQQGKEIFYSMLKL 600
Query: 355 YKIKPNFAHYWCMANLYAGAELTEEAEEILRKMP-EDNDNMSFESIMWVSLLSLCRFQGA 413
+ + P HY CM +L A L EEA +++ MP E ND ++W SLL+ CR QG
Sbjct: 601 HGVSPEDVHYGCMVDLLGRAGLLEEAVQLIEDMPMEPND------VIWNSLLAACRVQGN 654
Query: 414 VAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVD 473
V M A+ + P+ Y L NVYA AG+W D+A+VR MK++ + + PG +
Sbjct: 655 VEMAAYAAEKIQVLAPERTGSYVLLSNVYASAGRWNDMAKVRLSMKEKGLRKPPGTSSIQ 714
Query: 474 LKEVVEKLKVG 484
++ + G
Sbjct: 715 IRGKTHEFTSG 725
Score = 137 bits (345), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 95/341 (27%), Positives = 165/341 (48%), Gaps = 44/341 (12%)
Query: 1 MKQLLQIQAHLITSGLFFNNSFWTIN-LLKHSADFGSPD---YTVLVFKCINNPGT-FCV 55
+ +L L GL +N TI L+ S + G+ + + VF+ + GT F
Sbjct: 45 IDELKMFHRSLTKQGL--DNDVSTITKLVARSCELGTRESLSFAKEVFENSESYGTCFMY 102
Query: 56 NAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALK 115
N++I+ Y++S + ++ ++ +L+M+ +G P+ YTF +CAK+ G HGL +K
Sbjct: 103 NSLIRGYASSGLCNEAILLFLRMMNSGISPDKYTFPFGLSACAKSRAKGNGIQIHGLIVK 162
Query: 116 NGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHEL 175
G A+++FVQ NS+V + G++ +A ++
Sbjct: 163 MGY----------------------AKDLFVQ---------NSLVHFYAECGELDSARKV 191
Query: 176 FDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSG-FRGNDKTMASVLTACGRSAR 234
FD M ERNVVSW MI GY++ ++ LF M++ N TM V++AC +
Sbjct: 192 FDEMSERNVVSWTSMICGYARRDFAKDAVDLFFRMVRDEEVTPNSVTMVCVISACAKLED 251
Query: 235 FNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILG 294
G V+ + + ++ N ++ +AL+D+Y KC ++VA+R+FD NL NAM
Sbjct: 252 LETGEKVYAFIRNSGIEVNDLMVSALVDMYMKCNAIDVAKRLFDEYGASNLDLCNAMASN 311
Query: 295 HCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICAC 335
+ G E + +F +++ V PD I+ + I +C
Sbjct: 312 YVRQGLTREALGVFNLMMDSGV-----RPDRISMLSAISSC 347
Score = 106 bits (265), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 84/358 (23%), Positives = 152/358 (42%), Gaps = 60/358 (16%)
Query: 7 IQAHLITSGLFFNNSFWTINLLKH-SADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSNS 65
IQ H + + + + N L H A+ G D VF ++ ++I Y+
Sbjct: 154 IQIHGLIVKMGYAKDLFVQNSLVHFYAECGELDSARKVFDEMSERNVVSWTSMICGYARR 213
Query: 66 CVPDQGVVFYLQMIKNG-FMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPV 124
V + +M+++ PNS T V + +CAK +E G + +G++ +
Sbjct: 214 DFAKDAVDLFFRMVRDEEVTPNSVTMVCVISACAKLEDLETGEKVYAFIRNSGIEVNDLM 273
Query: 125 MNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNV 184
+++L++MY A+D A+ LFD N+
Sbjct: 274 VSALVDMYMKCNAIDVAK-------------------------------RLFDEYGASNL 302
Query: 185 VSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGY 244
N M S Y + G +L +F MM SG R + +M S +++C + G+S HGY
Sbjct: 303 DLCNAMASNYVRQGLTREALGVFNLMMDSGVRPDRISMLSAISSCSQLRNILWGKSCHGY 362
Query: 245 TVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGK---- 300
+R + + ALID+Y KC + + A R+FD M+++ +V WN+++ G+ +G+
Sbjct: 363 VLRNGFESWDNICNALIDMYMKCHRQDTAFRIFDRMSNKTVVTWNSIVAGYVENGEVDAA 422
Query: 301 -------PEEGIKLFTALVNGTVAGG----------------SISPDEITFIGVICAC 335
PE+ I + +++G V G ++ D +T + + AC
Sbjct: 423 WETFETMPEKNIVSWNTIISGLVQGSLFEEAIEVFCSMQSQEGVNADGVTMMSIASAC 480
Score = 97.1 bits (240), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 49/162 (30%), Positives = 87/162 (53%), Gaps = 4/162 (2%)
Query: 187 WNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTV 246
+N +I GY+ SG ++ LF MM SG + T L+AC +S G +HG V
Sbjct: 102 YNSLIRGYASSGLCNEAILLFLRMMNSGISPDKYTFPFGLSACAKSRAKGNGIQIHGLIV 161
Query: 247 RTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIK 306
+ ++ + +L+ Y++C +++ A++VFD M++RN+V W +MI G+ ++ +
Sbjct: 162 KMGYAKDLFVQNSLVHFYAECGELDSARKVFDEMSERNVVSWTSMICGYARRDFAKDAVD 221
Query: 307 LFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYF 348
LF +V ++P+ +T + VI AC + E L G K +
Sbjct: 222 LFFRMVRDE----EVTPNSVTMVCVISACAKLEDLETGEKVY 259
>sp|Q9SKQ4|PP167_ARATH Pentatricopeptide repeat-containing protein At2g21090
OS=Arabidopsis thaliana GN=PCMP-E48 PE=2 SV=1
Length = 597
Score = 240 bits (613), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 130/443 (29%), Positives = 233/443 (52%), Gaps = 11/443 (2%)
Query: 42 LVFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTG 101
+VF + N ++ Y+ + + FY + ++G N ++F L +C K+
Sbjct: 134 VVFDSMPERDVVSWNTMVIGYAQDGNLHEALWFYKEFRRSGIKFNEFSFAGLLTACVKSR 193
Query: 102 CVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVS 161
++ HG L G + + S+I+ Y G M+ A+ F +M+ +D+ W +++S
Sbjct: 194 QLQLNRQAHGQVLVAGFLSNVVLSCSIIDAYAKCGQMESAKRCFDEMTVKDIHIWTTLIS 253
Query: 162 GHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKT 221
G+ + GDM AA +LF MPE+N VSW +I+GY + G+ +L LFR+M+ G + T
Sbjct: 254 GYAKLGDMEAAEKLFCEMPEKNPVSWTALIAGYVRQGSGNRALDLFRKMIALGVKPEQFT 313
Query: 222 MASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMA 281
+S L A A G+ +HGY +RT+++PN I+ ++LID+YSK +E ++RVF
Sbjct: 314 FSSCLCASASIASLRHGKEIHGYMIRTNVRPNAIVISSLIDMYSKSGSLEASERVFRICD 373
Query: 282 DR-NLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAEL 340
D+ + V WN MI HG + +++ ++ V P+ T + ++ AC + L
Sbjct: 374 DKHDCVFWNTMISALAQHGLGHKALRMLDDMIKFRV-----QPNRTTLVVILNACSHSGL 428
Query: 341 LTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIM 400
+ EG ++F M + I P+ HY C+ +L A +E + +MP + D +
Sbjct: 429 VEEGLRWFESMTVQHGIVPDQEHYACLIDLLGRAGCFKELMRKIEEMPFEPDKH-----I 483
Query: 401 WVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKK 460
W ++L +CR G + ++ A + +DP+ + Y L ++YA G+WE V ++R +MKK
Sbjct: 484 WNAILGVCRIHGNEELGKKAADELIKLDPESSAPYILLSSIYADHGKWELVEKLRGVMKK 543
Query: 461 RRMGRMPGCRLVDLKEVVEKLKV 483
RR+ + +++++ VE V
Sbjct: 544 RRVNKEKAVSWIEIEKKVEAFTV 566
Score = 165 bits (417), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 115/392 (29%), Positives = 185/392 (47%), Gaps = 40/392 (10%)
Query: 47 INNPGT--FCV-NAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCV 103
I+NP CV + + ++ Q V + + G SL C T +
Sbjct: 3 ISNPRKRPICVAQSFLSKHATKAELSQAVSRLESLTQQGIRLPFDLLASLLQQCGDTKSL 62
Query: 104 ERGGMCHGLALKNGVDFELP---VMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIV 160
++G H G F+ P + N LI MY G A +F QM R+L SWN++V
Sbjct: 63 KQGKWIHRHLKITG--FKRPNTLLSNHLIGMYMKCGKPIDACKVFDQMHLRNLYSWNNMV 120
Query: 161 SGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDK 220
SG+V+SG + A +FD MPER+VVSWN M+ GY++ GN +L ++E +SG + N+
Sbjct: 121 SGYVKSGMLVRARVVFDSMPERDVVSWNTMVIGYAQDGNLHEALWFYKEFRRSGIKFNEF 180
Query: 221 TMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSM 280
+ A +LTAC +S + R HG + N++L ++ID Y+KC ++E A+R FD M
Sbjct: 181 SFAGLLTACVKSRQLQLNRQAHGQVLVAGFLSNVVLSCSIIDAYAKCGQMESAKRCFDEM 240
Query: 281 ADRNLVCWNAMILGHCIHGKPEEGIKLF-----------TALVNGTVAGGS--------- 320
+++ W +I G+ G E KLF TAL+ G V GS
Sbjct: 241 TVKDIHIWTTLISGYAKLGDMEAAEKLFCEMPEKNPVSWTALIAGYVRQGSGNRALDLFR 300
Query: 321 ------ISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGA 374
+ P++ TF +CA L G++ MI ++PN + ++Y+ +
Sbjct: 301 KMIALGVKPEQFTFSSCLCASASIASLRHGKEIHGYMIR-TNVRPNAIVISSLIDMYSKS 359
Query: 375 ELTEEAEEILRKMPEDNDNMSFESIMWVSLLS 406
E +E + R + +D + W +++S
Sbjct: 360 GSLEASERVFRICDDKHD-----CVFWNTMIS 386
Score = 69.7 bits (169), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 68/284 (23%), Positives = 115/284 (40%), Gaps = 39/284 (13%)
Query: 191 ISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSL 250
+S ++ ++ + + G R +AS+L CG + +G+ +H + T
Sbjct: 18 LSKHATKAELSQAVSRLESLTQQGIRLPFDLLASLLQQCGDTKSLKQGKWIHRHLKITGF 77
Query: 251 K-PNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHG---------- 299
K PN +L LI +Y KC K A +VFD M RNL WN M+ G+ G
Sbjct: 78 KRPNTLLSNHLIGMYMKCGKPIDACKVFDQMHLRNLYSWNNMVSGYVKSGMLVRARVVFD 137
Query: 300 -KPEEGIKLFTALVNGTVAGGS---------------ISPDEITFIGVICACVRAELLTE 343
PE + + +V G G+ I +E +F G++ ACV++ L
Sbjct: 138 SMPERDVVSWNTMVIGYAQDGNLHEALWFYKEFRRSGIKFNEFSFAGLLTACVKSRQLQL 197
Query: 344 GRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESI-MWV 402
R+ Q++ N + + YA E A+ D M+ + I +W
Sbjct: 198 NRQAHGQVL-VAGFLSNVVLSCSIIDAYAKCGQMESAKRCF-------DEMTVKDIHIWT 249
Query: 403 SLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAG 446
+L+S G + E+L F +M ++ + L+ Y G
Sbjct: 250 TLISGYAKLGDMEAAEKL---FCEMPEKNPVSWTALIAGYVRQG 290
>sp|Q9STF3|PP265_ARATH Pentatricopeptide repeat-containing protein At3g46790,
chloroplastic OS=Arabidopsis thaliana GN=CRR2 PE=2 SV=1
Length = 657
Score = 238 bits (608), Expect = 6e-62, Method: Compositional matrix adjust.
Identities = 141/471 (29%), Positives = 236/471 (50%), Gaps = 50/471 (10%)
Query: 5 LQIQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSN 64
L++ H++ +G + F L+ +D GS DY VF + NA+ +A +
Sbjct: 97 LRVHRHILDNG-SDQDPFLATKLIGMYSDLGSVDYARKVFDKTRKRTIYVWNALFRALTL 155
Query: 65 SCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGC----VERGGMCHGLALKNGVDF 120
+ ++ + Y +M + G + +T+ + +C + C + +G H + G
Sbjct: 156 AGHGEEVLGLYWKMNRIGVESDRFTYTYVLKACVASECTVNHLMKGKEIHAHLTRRGYSS 215
Query: 121 ELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMP 180
+ +M +L++MY FG +D A +F MP
Sbjct: 216 HVYIMTTLVDMYARFGCVDYASY-------------------------------VFGGMP 244
Query: 181 ERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRG--NDKTMASVLTACGRSARFNEG 238
RNVVSW+ MI+ Y+K+G +L+ FREMM+ N TM SVL AC A +G
Sbjct: 245 VRNVVSWSAMIACYAKNGKAFEALRTFREMMRETKDSSPNSVTMVSVLQACASLAALEQG 304
Query: 239 RSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIH 298
+ +HGY +R L + + +AL+ +Y +C K+EV QRVFD M DR++V WN++I + +H
Sbjct: 305 KLIHGYILRRGLDSILPVISALVTMYGRCGKLEVGQRVFDRMHDRDVVSWNSLISSYGVH 364
Query: 299 GKPEEGIKLFTA-LVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKI 357
G ++ I++F L NG SP +TF+ V+ AC L+ EG++ F M + I
Sbjct: 365 GYGKKAIQIFEEMLANGA------SPTPVTFVSVLGACSHEGLVEEGKRLFETMWRDHGI 418
Query: 358 KPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMV 417
KP HY CM +L A +EA ++++ M + +W SLL CR G V +
Sbjct: 419 KPQIEHYACMVDLLGRANRLDEAAKMVQDMRTEPGPK-----VWGSLLGSCRIHGNVELA 473
Query: 418 ERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPG 468
ER ++ ++P++ Y L ++YA A W++V RV++L++ R + ++PG
Sbjct: 474 ERASRRLFALEPKNAGNYVLLADIYAEAQMWDEVKRVKKLLEHRGLQKLPG 524
Score = 89.4 bits (220), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 65/265 (24%), Positives = 110/265 (41%), Gaps = 38/265 (14%)
Query: 85 PNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNM 144
P+ T+ L C + H L NG D + + LI MY G++D AR
Sbjct: 75 PSQQTYELLILCCGHRSSLSDALRVHRHILDNGSDQDPFLATKLIGMYSDLGSVDYAR-- 132
Query: 145 FVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSL 204
++FD +R + WN + + +G+ L
Sbjct: 133 -----------------------------KVFDKTRKRTIYVWNALFRALTLAGHGEEVL 163
Query: 205 KLFREMMKSGFRGNDKTMASVLTACGRSA----RFNEGRSVHGYTVRTSLKPNIILDTAL 260
L+ +M + G + T VL AC S +G+ +H + R ++ + T L
Sbjct: 164 GLYWKMNRIGVESDRFTYTYVLKACVASECTVNHLMKGKEIHAHLTRRGYSSHVYIMTTL 223
Query: 261 IDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGS 320
+D+Y++ V+ A VF M RN+V W+AMI + +GK E ++ F ++ T
Sbjct: 224 VDMYARFGCVDYASYVFGGMPVRNVVSWSAMIACYAKNGKAFEALRTFREMMRET---KD 280
Query: 321 ISPDEITFIGVICACVRAELLTEGR 345
SP+ +T + V+ AC L +G+
Sbjct: 281 SSPNSVTMVSVLQACASLAALEQGK 305
Score = 52.8 bits (125), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 39/155 (25%), Positives = 66/155 (42%), Gaps = 9/155 (5%)
Query: 185 VSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGY 244
+S N +I K G LK ++ + +T ++ CG + ++ VH +
Sbjct: 47 ISNNQLIQSLCKEGK----LKQAIRVLSQESSPSQQTYELLILCCGHRSSLSDALRVHRH 102
Query: 245 TVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEG 304
+ + L T LI +YS V+ A++VFD R + WNA+ + G EE
Sbjct: 103 ILDNGSDQDPFLATKLIGMYSDLGSVDYARKVFDKTRKRTIYVWNALFRALTLAGHGEEV 162
Query: 305 IKLFTALVNGTVAGGSISPDEITFIGVICACVRAE 339
+ L+ + V D T+ V+ ACV +E
Sbjct: 163 LGLYWKMNRIGVES-----DRFTYTYVLKACVASE 192
>sp|Q9LN01|PPR21_ARATH Pentatricopeptide repeat-containing protein At1g08070
OS=Arabidopsis thaliana GN=PCMP-H12 PE=2 SV=1
Length = 741
Score = 238 bits (607), Expect = 8e-62, Method: Compositional matrix adjust.
Identities = 140/453 (30%), Positives = 234/453 (51%), Gaps = 49/453 (10%)
Query: 56 NAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALK 115
NA+I Y+ + + + + M+K P+ T V++ +CA++G +E G H
Sbjct: 235 NAMISGYAETGNYKEALELFKDMMKTNVRPDESTMVTVVSACAQSGSIELGRQVHLWIDD 294
Query: 116 NGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHEL 175
+G L ++N+LI++Y + G++ A L
Sbjct: 295 HGFGSNLKIVNALIDLYS-------------------------------KCGELETACGL 323
Query: 176 FDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARF 235
F+ +P ++V+SWN +I GY+ +L LF+EM++SG ND TM S+L AC
Sbjct: 324 FERLPYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAI 383
Query: 236 NEGRSVHGYTVR--TSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMIL 293
+ GR +H Y + + L T+LID+Y+KC +E A +VF+S+ ++L WNAMI
Sbjct: 384 DIGRWIHVYIDKRLKGVTNASSLRTSLIDMYAKCGDIEAAHQVFNSILHKSLSSWNAMIF 443
Query: 294 GHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMID 353
G +HG+ + LF+ + I PD+ITF+G++ AC + +L GR FR M
Sbjct: 444 GFAMHGRADASFDLFSRMRKI-----GIQPDDITFVGLLSACSHSGMLDLGRHIFRTMTQ 498
Query: 354 FYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGA 413
YK+ P HY CM +L + L +EAEE++ M + D ++W SLL C+ G
Sbjct: 499 DYKMTPKLEHYGCMIDLLGHSGLFKEAEEMINMMEMEPDG-----VIWCSLLKACKMHGN 553
Query: 414 VAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVD 473
V + E A++ + ++P++ Y L N+YA AG+W +VA+ R L+ + M ++PGC ++
Sbjct: 554 VELGESFAENLIKIEPENPGSYVLLSNIYASAGRWNEVAKTRALLNDKGMKKVPGCSSIE 613
Query: 474 LKEVVEKLKVGHFWRG------GMKEEVNKMME 500
+ VV + +G + GM EE+ ++E
Sbjct: 614 IDSVVHEFIIGDKFHPRNREIYGMLEEMEVLLE 646
Score = 206 bits (523), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 115/347 (33%), Positives = 188/347 (54%), Gaps = 7/347 (2%)
Query: 1 MKQLLQIQAHLITSGLFFNNSFWT--INLLKHSADFGSPDYTVLVFKCINNPGTFCVNAV 58
++ L I A +I GL N + I S F Y + VFK I P N +
Sbjct: 46 LQSLRIIHAQMIKIGLHNTNYALSKLIEFCILSPHFEGLPYAISVFKTIQEPNLLIWNTM 105
Query: 59 IKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGV 118
+ ++ S P + Y+ MI G +PNSYTF + SCAK+ + G HG LK G
Sbjct: 106 FRGHALSSDPVSALKLYVCMISLGLLPNSYTFPFVLKSCAKSKAFKEGQQIHGHVLKLGC 165
Query: 119 DFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDI 178
D +L V SLI+MY G ++ A +F + RD++S+ +++ G+ G + A +LFD
Sbjct: 166 DLDLYVHTSLISMYVQNGRLEDAHKVFDKSPHRDVVSYTALIKGYASRGYIENAQKLFDE 225
Query: 179 MPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEG 238
+P ++VVSWN MISGY+++GN +L+LF++MMK+ R ++ TM +V++AC +S G
Sbjct: 226 IPVKDVVSWNAMISGYAETGNYKEALELFKDMMKTNVRPDESTMVTVVSACAQSGSIELG 285
Query: 239 RSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIH 298
R VH + N+ + ALIDLYSKC ++E A +F+ + ++++ WN +I G+
Sbjct: 286 RQVHLWIDDHGFGSNLKIVNALIDLYSKCGELETACGLFERLPYKDVISWNTLIGGYTHM 345
Query: 299 GKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGR 345
+E + LF ++ +P+++T + ++ AC + GR
Sbjct: 346 NLYKEALLLFQEMLR-----SGETPNDVTMLSILPACAHLGAIDIGR 387
Score = 54.7 bits (130), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/225 (19%), Positives = 98/225 (43%), Gaps = 19/225 (8%)
Query: 239 RSVHGYTVRTSLKPNIILDTALID---LYSKCQKVEVAQRVFDSMADRNLVCWNAMILGH 295
R +H ++ L + LI+ L + + A VF ++ + NL+ WN M GH
Sbjct: 50 RIIHAQMIKIGLHNTNYALSKLIEFCILSPHFEGLPYAISVFKTIQEPNLLIWNTMFRGH 109
Query: 296 CIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFY 355
+ P +KL+ +++ + P+ TF V+ +C +++ EG++ ++
Sbjct: 110 ALSSDPVSALKLYVCMISL-----GLLPNSYTFPFVLKSCAKSKAFKEGQQIHGHVLKLG 164
Query: 356 KIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVA 415
+ H + ++Y E+A ++ K P + VS +L + +
Sbjct: 165 CDLDLYVHT-SLISMYVQNGRLEDAHKVFDKSPHRD---------VVSYTALIKGYASRG 214
Query: 416 MVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARV-RELMK 459
+E K F ++ +D + +++ YA G +++ + +++MK
Sbjct: 215 YIENAQKLFDEIPVKDVVSWNAMISGYAETGNYKEALELFKDMMK 259
Score = 35.4 bits (80), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 52/220 (23%), Positives = 88/220 (40%), Gaps = 28/220 (12%)
Query: 19 NNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQM 78
N S +L+ A G + VF I + NA+I ++ D + +M
Sbjct: 402 NASSLRTSLIDMYAKCGDIEAAHQVFNSILHKSLSSWNAMIFGFAMHGRADASFDLFSRM 461
Query: 79 IKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAM 138
K G P+ TFV L +C+ +G ++ G + D++ M + YGC +
Sbjct: 462 RKIGIQPDDITFVGLLSACSHSGMLDLGRHIFRTMTQ---DYK---MTPKLEHYGCMIDL 515
Query: 139 DCARNMF--------VQMSPRDLISWNSIVS-----GHVRSGDMSAAHELFDIMPERNVV 185
+F + D + W S++ G+V G+ S A L I PE N
Sbjct: 516 LGHSGLFKEAEEMINMMEMEPDGVIWCSLLKACKMHGNVELGE-SFAENLIKIEPE-NPG 573
Query: 186 SWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASV 225
S+ ++ + Y+ +G + E+ K+ NDK M V
Sbjct: 574 SYVLLSNIYASAGR-------WNEVAKTRALLNDKGMKKV 606
>sp|Q56X05|PPR15_ARATH Pentatricopeptide repeat-containing protein At1g06145
OS=Arabidopsis thaliana GN=EMB1444 PE=2 SV=2
Length = 577
Score = 236 bits (603), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 139/469 (29%), Positives = 234/469 (49%), Gaps = 48/469 (10%)
Query: 34 FGSPDYTVLVFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSL 93
F D V + P F NA+ K + P + + Y++M+++ P+SYT+ SL
Sbjct: 73 FKRLDLAVSTMTQMQEPNVFVYNALFKGFVTCSHPIRSLELYVRMLRDSVSPSSYTYSSL 132
Query: 94 FGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDL 153
A + G K G F + + +LI+ Y G + AR +F +M RD
Sbjct: 133 VK--ASSFASRFGESLQAHIWKFGFGFHVKIQTTLIDFYSATGRIREARKVFDEMPERDD 190
Query: 154 ISWNSIVSGHVRSGDMSAAHEL-------------------------------FDIMPER 182
I+W ++VS + R DM +A+ L F+ MP +
Sbjct: 191 IAWTTMVSAYRRVLDMDSANSLANQMSEKNEATSNCLINGYMGLGNLEQAESLFNQMPVK 250
Query: 183 NVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVH 242
+++SW MI GYS++ ++ +F +MM+ G ++ TM++V++AC G+ VH
Sbjct: 251 DIISWTTMIKGYSQNKRYREAIAVFYKMMEEGIIPDEVTMSTVISACAHLGVLEIGKEVH 310
Query: 243 GYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPE 302
YT++ ++ + +AL+D+YSKC +E A VF ++ +NL CWN++I G HG +
Sbjct: 311 MYTLQNGFVLDVYIGSALVDMYSKCGSLERALLVFFNLPKKNLFCWNSIIEGLAAHGFAQ 370
Query: 303 EGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFA 362
E +K+F + S+ P+ +TF+ V AC A L+ EGR+ +R MID Y I N
Sbjct: 371 EALKMFAKM-----EMESVKPNAVTFVSVFTACTHAGLVDEGRRIYRSMIDDYSIVSNVE 425
Query: 363 HYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFE--SIMWVSLLSLCRFQGAVAMVERL 420
HY M +L++ A L EA E++ NM FE +++W +LL CR + + E
Sbjct: 426 HYGGMVHLFSKAGLIYEALELI-------GNMEFEPNAVIWGALLDGCRIHKNLVIAEIA 478
Query: 421 AKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRM-PG 468
+ ++P + Y L+++YA +W DVA +R M++ + ++ PG
Sbjct: 479 FNKLMVLEPMNSGYYFLLVSMYAEQNRWRDVAEIRGRMRELGIEKICPG 527
>sp|O82380|PP175_ARATH Pentatricopeptide repeat-containing protein At2g29760,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-H33 PE=2
SV=1
Length = 738
Score = 236 bits (602), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 123/451 (27%), Positives = 230/451 (50%), Gaps = 11/451 (2%)
Query: 35 GSPDYTVLVFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLF 94
G D VF I N++I + PD+ + + +M + T V +
Sbjct: 180 GDLDSACKVFTTIKEKDVVSWNSMINGFVQKGSPDKALELFKKMESEDVKASHVTMVGVL 239
Query: 95 GSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLI 154
+CAK +E G +N V+ L + N++++MY G+++ A+ +F M +D +
Sbjct: 240 SACAKIRNLEFGRQVCSYIEENRVNVNLTLANAMLDMYTKCGSIEDAKRLFDAMEEKDNV 299
Query: 155 SWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREM-MKS 213
+W +++ G+ S D AA E+ + MP++++V+WN +IS Y ++G P +L +F E+ ++
Sbjct: 300 TWTTMLDGYAISEDYEAAREVLNSMPQKDIVAWNALISAYEQNGKPNEALIVFHELQLQK 359
Query: 214 GFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVA 273
+ N T+ S L+AC + GR +H Y + ++ N + +ALI +YSKC +E +
Sbjct: 360 NMKLNQITLVSTLSACAQVGALELGRWIHSYIKKHGIRMNFHVTSALIHMYSKCGDLEKS 419
Query: 274 QRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVIC 333
+ VF+S+ R++ W+AMI G +HG E + +F + V P+ +TF V C
Sbjct: 420 REVFNSVEKRDVFVWSAMIGGLAMHGCGNEAVDMFYKMQEANV-----KPNGVTFTNVFC 474
Query: 334 ACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDN 393
AC L+ E F QM Y I P HY C+ ++ + E+A + + MP
Sbjct: 475 ACSHTGLVDEAESLFHQMESNYGIVPEEKHYACIVDVLGRSGYLEKAVKFIEAMP----- 529
Query: 394 MSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVAR 453
+ + +W +LL C+ + + E ++++P++ + L N+YA G+WE+V+
Sbjct: 530 IPPSTSVWGALLGACKIHANLNLAEMACTRLLELEPRNDGAHVLLSNIYAKLGKWENVSE 589
Query: 454 VRELMKKRRMGRMPGCRLVDLKEVVEKLKVG 484
+R+ M+ + + PGC +++ ++ + G
Sbjct: 590 LRKHMRVTGLKKEPGCSSIEIDGMIHEFLSG 620
Score = 160 bits (404), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 110/414 (26%), Positives = 195/414 (47%), Gaps = 63/414 (15%)
Query: 1 MKQLLQIQAHLITSGLFFNNSFWTINLLKHSA--DFGSPDYTVLVFKCINNPGTFCVNAV 58
++QL Q H+I +G F ++ + L +A F S +Y VF I P +F N +
Sbjct: 43 LRQLKQTHGHMIRTGTF-SDPYSASKLFAMAALSSFASLEYARKVFDEIPKPNSFAWNTL 101
Query: 59 IKAYSNSCVPDQGVVFYLQMI-KNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNG 117
I+AY++ P + +L M+ ++ PN YTF L + A+ + G HG+A+K+
Sbjct: 102 IRAYASGPDPVLSIWAFLDMVSESQCYPNKYTFPFLIKAAAEVSSLSLGQSLHGMAVKSA 161
Query: 118 VDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFD 177
V ++ V NSLI+ Y C GD+ +A ++F
Sbjct: 162 VGSDVFVANSLIHCY-----FSC--------------------------GDLDSACKVFT 190
Query: 178 IMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNE 237
+ E++VVSWN MI+G+ + G+P +L+LF++M + + TM VL+AC +
Sbjct: 191 TIKEKDVVSWNSMINGFVQKGSPDKALELFKKMESEDVKASHVTMVGVLSACAKIRNLEF 250
Query: 238 GRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCI 297
GR V Y + N+ L A++D+Y+KC +E A+R+FD+M +++ V W M+ G+ I
Sbjct: 251 GRQVCSYIEENRVNVNLTLANAMLDMYTKCGSIEDAKRLFDAMEEKDNVTWTTMLDGYAI 310
Query: 298 -----------HGKPEEGIKLFTALVNGTVAGG----------------SISPDEITFIG 330
+ P++ I + AL++ G ++ ++IT +
Sbjct: 311 SEDYEAAREVLNSMPQKDIVAWNALISAYEQNGKPNEALIVFHELQLQKNMKLNQITLVS 370
Query: 331 VICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEIL 384
+ AC + L GR + I + I+ NF + ++Y+ E++ E+
Sbjct: 371 TLSACAQVGALELGR-WIHSYIKKHGIRMNFHVTSALIHMYSKCGDLEKSREVF 423
Score = 99.8 bits (247), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 72/300 (24%), Positives = 144/300 (48%), Gaps = 19/300 (6%)
Query: 167 GDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMM-KSGFRGNDKTMASV 225
+ A ++FD +P+ N +WN +I Y+ +P S+ F +M+ +S N T +
Sbjct: 78 ASLEYARKVFDEIPKPNSFAWNTLIRAYASGPDPVLSIWAFLDMVSESQCYPNKYTFPFL 137
Query: 226 LTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNL 285
+ A + + G+S+HG V++++ ++ + +LI Y C ++ A +VF ++ ++++
Sbjct: 138 IKAAAEVSSLSLGQSLHGMAVKSAVGSDVFVANSLIHCYFSCGDLDSACKVFTTIKEKDV 197
Query: 286 VCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGR 345
V WN+MI G G P++ ++LF + + V +T +GV+ AC + L GR
Sbjct: 198 VSWNSMINGFVQKGSPDKALELFKKMESEDVKAS-----HVTMVGVLSACAKIRNLEFGR 252
Query: 346 KYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLL 405
+ I+ ++ N M ++Y E+A+ + M E+ DN + W ++L
Sbjct: 253 QVC-SYIEENRVNVNLTLANAMLDMYTKCGSIEDAKRLFDAM-EEKDN-----VTWTTML 305
Query: 406 SLCRFQGAVAMVERLAKSFVDMDPQ-DFSRYQFLLNVYAVAGQWEDVARV-RELMKKRRM 463
A++ A+ ++ PQ D + L++ Y G+ + V EL ++ M
Sbjct: 306 D----GYAISEDYEAAREVLNSMPQKDIVAWNALISAYEQNGKPNEALIVFHELQLQKNM 361
Score = 33.9 bits (76), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 27/117 (23%), Positives = 48/117 (41%), Gaps = 6/117 (5%)
Query: 231 RSARFNEGRSVHGYTVRTSLKPNIILDTALIDL--YSKCQKVEVAQRVFDSMADRNLVCW 288
R + + HG+ +RT + + L + S +E A++VFD + N W
Sbjct: 39 RCVSLRQLKQTHGHMIRTGTFSDPYSASKLFAMAALSSFASLEYARKVFDEIPKPNSFAW 98
Query: 289 NAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGR 345
N +I + P I F +V+ + P++ TF +I A L+ G+
Sbjct: 99 NTLIRAYASGPDPVLSIWAFLDMVSES----QCYPNKYTFPFLIKAAAEVSSLSLGQ 151
>sp|Q9MA50|PPR13_ARATH Pentatricopeptide repeat-containing protein At1g05750,
chloroplastic OS=Arabidopsis thaliana GN=PDE247 PE=2
SV=1
Length = 500
Score = 236 bits (601), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 134/414 (32%), Positives = 216/414 (52%), Gaps = 14/414 (3%)
Query: 75 YLQMIKNGFMPNSYTFVSLFGSCAK--TGCVERGGMCHGLALKNGVDF-ELPVMNSLINM 131
+ M G PN TF++L C +G G + HG A K G+D + V ++I M
Sbjct: 59 FSDMTLAGVEPNHITFIALLSGCGDFTSGSEALGDLLHGYACKLGLDRNHVMVGTAIIGM 118
Query: 132 YGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMI 191
Y G AR +F M ++ ++WN+++ G++RSG + A ++FD MPER+++SW MI
Sbjct: 119 YSKRGRFKKARLVFDYMEDKNSVTWNTMIDGYMRSGQVDNAAKMFDKMPERDLISWTAMI 178
Query: 192 SGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLK 251
+G+ K G +L FREM SG + + + + L AC + G VH Y + K
Sbjct: 179 NGFVKKGYQEEALLWFREMQISGVKPDYVAIIAALNACTNLGALSFGLWVHRYVLSQDFK 238
Query: 252 PNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTAL 311
N+ + +LIDLY +C VE A++VF +M R +V WN++I+G +G E + F +
Sbjct: 239 NNVRVSNSLIDLYCRCGCVEFARQVFYNMEKRTVVSWNSVIVGFAANGNAHESLVYFRKM 298
Query: 312 VNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLY 371
PD +TF G + AC L+ EG +YF+ M Y+I P HY C+ +LY
Sbjct: 299 QE-----KGFKPDAVTFTGALTACSHVGLVEEGLRYFQIMKCDYRISPRIEHYGCLVDLY 353
Query: 372 AGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQG-AVAMVERLAKSFVDMDPQ 430
+ A E+A ++++ MP M ++ SLL+ C G + + ERL K D++ +
Sbjct: 354 SRAGRLEDALKLVQSMP-----MKPNEVVIGSLLAACSNHGNNIVLAERLMKHLTDLNVK 408
Query: 431 DFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLKEVVEKLKVG 484
S Y L N+YA G+WE +++R MK + + PG +++ + + G
Sbjct: 409 SHSNYVILSNMYAADGKWEGASKMRRKMKGLGLKKQPGFSSIEIDDCMHVFMAG 462
Score = 79.3 bits (194), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 56/225 (24%), Positives = 94/225 (41%), Gaps = 32/225 (14%)
Query: 57 AVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKN 116
A+I + ++ ++++ +M +G P+ ++ +C G + G H L
Sbjct: 176 AMINGFVKKGYQEEALLWFREMQISGVKPDYVAIIAALNACTNLGALSFGLWVHRYVLSQ 235
Query: 117 GVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELF 176
+ V NSLI++Y G ++ AR +F M R ++SWNS+
Sbjct: 236 DFKNNVRVSNSLIDLYCRCGCVEFARQVFYNMEKRTVVSWNSV----------------- 278
Query: 177 DIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFN 236
I G++ +GN SL FR+M + GF+ + T LTAC
Sbjct: 279 --------------IVGFAANGNAHESLVYFRKMQEKGFKPDAVTFTGALTACSHVGLVE 324
Query: 237 EG-RSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSM 280
EG R + P I L+DLYS+ ++E A ++ SM
Sbjct: 325 EGLRYFQIMKCDYRISPRIEHYGCLVDLYSRAGRLEDALKLVQSM 369
Score = 38.9 bits (89), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 41/211 (19%), Positives = 90/211 (42%), Gaps = 6/211 (2%)
Query: 12 ITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSNSCVPDQG 71
+ S F NN + +L+ G ++ VF + N+VI ++ + +
Sbjct: 232 VLSQDFKNNVRVSNSLIDLYCRCGCVEFARQVFYNMEKRTVVSWNSVIVGFAANGNAHES 291
Query: 72 VVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERG-GMCHGLALKNGVDFELPVMNSLIN 130
+V++ +M + GF P++ TF +C+ G VE G + + + L++
Sbjct: 292 LVYFRKMQEKGFKPDAVTFTGALTACSHVGLVEEGLRYFQIMKCDYRISPRIEHYGCLVD 351
Query: 131 MYGCFGAMDCARNMF--VQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVS-- 186
+Y G ++ A + + M P +++ + + + ++ A L + + NV S
Sbjct: 352 LYSRAGRLEDALKLVQSMPMKPNEVVIGSLLAACSNHGNNIVLAERLMKHLTDLNVKSHS 411
Query: 187 -WNIMISGYSKSGNPGCSLKLFREMMKSGFR 216
+ I+ + Y+ G + K+ R+M G +
Sbjct: 412 NYVILSNMYAADGKWEGASKMRRKMKGLGLK 442
>sp|Q9FRI5|PPR57_ARATH Pentatricopeptide repeat-containing protein At1g25360
OS=Arabidopsis thaliana GN=PCMP-H74 PE=2 SV=1
Length = 790
Score = 236 bits (601), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 135/436 (30%), Positives = 221/436 (50%), Gaps = 11/436 (2%)
Query: 48 NNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGG 107
+N NA+I Y N + + +M+ +G + +T+ S+ +CA G ++ G
Sbjct: 247 DNMKLVAYNAMISGYVNRGFYQEALEMVRRMVSSGIELDEFTYPSVIRACATAGLLQLGK 306
Query: 108 MCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSG 167
H L+ DF NSL+++Y G D AR +F +M +DL+SWN+++SG+V SG
Sbjct: 307 QVHAYVLRRE-DFSFHFDNSLVSLYYKCGKFDEARAIFEKMPAKDLVSWNALLSGYVSSG 365
Query: 168 DMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLT 227
+ A +F M E+N++SW IMISG +++G LKLF M + GF D + +
Sbjct: 366 HIGEAKLIFKEMKEKNILSWMIMISGLAENGFGEEGLKLFSCMKREGFEPCDYAFSGAIK 425
Query: 228 ACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVC 287
+C + G+ H ++ ++ ALI +Y+KC VE A++VF +M + V
Sbjct: 426 SCAVLGAYCNGQQYHAQLLKIGFDSSLSAGNALITMYAKCGVVEEARQVFRTMPCLDSVS 485
Query: 288 WNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKY 347
WNA+I HG E + ++ ++ I PD IT + V+ AC A L+ +GRKY
Sbjct: 486 WNALIAALGQHGHGAEAVDVYEEMLK-----KGIRPDRITLLTVLTACSHAGLVDQGRKY 540
Query: 348 FRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSL 407
F M Y+I P HY + +L + +AE ++ +P + +W +LLS
Sbjct: 541 FDSMETVYRIPPGADHYARLIDLLCRSGKFSDAESVIESLP-----FKPTAEIWEALLSG 595
Query: 408 CRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMP 467
CR G + + A + P+ Y L N++A GQWE+VARVR+LM+ R + +
Sbjct: 596 CRVHGNMELGIIAADKLFGLIPEHDGTYMLLSNMHAATGQWEEVARVRKLMRDRGVKKEV 655
Query: 468 GCRLVDLKEVVEKLKV 483
C ++++ V V
Sbjct: 656 ACSWIEMETQVHTFLV 671
Score = 140 bits (353), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 107/418 (25%), Positives = 190/418 (45%), Gaps = 54/418 (12%)
Query: 52 TFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGM-CH 110
T NA+I +S++ + + +M GF P+++TF S+ A E+ + H
Sbjct: 113 TVMYNAMITGFSHNNDGYSAINLFCKMKHEGFKPDNFTFASVLAGLALVADDEKQCVQFH 172
Query: 111 GLALKNGVDFELPVMNSLINMYG-CFGA---MDCARNMFVQMSPRDLISWNSIVSGHVRS 166
ALK+G + V N+L+++Y C + + AR +F ++ +D SW ++++G+V++
Sbjct: 173 AAALKSGAGYITSVSNALVSVYSKCASSPSLLHSARKVFDEILEKDERSWTTMMTGYVKN 232
Query: 167 GDMSAAHELFDIMPER-NVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASV 225
G EL + M + +V++N MISGY G +L++ R M+ SG ++ T SV
Sbjct: 233 GYFDLGEELLEGMDDNMKLVAYNAMISGYVNRGFYQEALEMVRRMVSSGIELDEFTYPSV 292
Query: 226 LTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNL 285
+ AC + G+ VH Y +R + D +L+ LY KC K + A+ +F+ M ++L
Sbjct: 293 IRACATAGLLQLGKQVHAYVLRRE-DFSFHFDNSLVSLYYKCGKFDEARAIFEKMPAKDL 351
Query: 286 VCWNAMILGHCIHGK-------------------------------PEEGIKLFTALVNG 314
V WNA++ G+ G EEG+KLF+ +
Sbjct: 352 VSWNALLSGYVSSGHIGEAKLIFKEMKEKNILSWMIMISGLAENGFGEEGLKLFSCMKR- 410
Query: 315 TVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGA 374
P + F G I +C G++Y Q++ + + + +YA
Sbjct: 411 ----EGFEPCDYAFSGAIKSCAVLGAYCNGQQYHAQLLKI-GFDSSLSAGNALITMYAKC 465
Query: 375 ELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQG----AVAMVERLAKSFVDMD 428
+ EEA ++ R MP +S+ W +L++ G AV + E + K + D
Sbjct: 466 GVVEEARQVFRTMP------CLDSVSWNALIAALGQHGHGAEAVDVYEEMLKKGIRPD 517
Score = 105 bits (262), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 97/388 (25%), Positives = 180/388 (46%), Gaps = 51/388 (13%)
Query: 110 HGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDM 169
HG + G ++N LI++Y ++ AR +F ++S D I+ ++VSG+ SGD+
Sbjct: 37 HGNIITFGFQPRAHILNRLIDVYCKSSELNYARQLFDEISEPDKIARTTMVSGYCASGDI 96
Query: 170 SAAHELFDIMP--ERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLT 227
+ A +F+ P R+ V +N MI+G+S + + ++ LF +M GF+ ++ T ASVL
Sbjct: 97 TLARGVFEKAPVCMRDTVMYNAMITGFSHNNDGYSAINLFCKMKHEGFKPDNFTFASVLA 156
Query: 228 ACGRSARFNEGRSV--HGYTVRTSLKPNIILDTALIDLYSKCQK----VEVAQRVFDSMA 281
A +E + V H +++ + AL+ +YSKC + A++VFD +
Sbjct: 157 GLALVAD-DEKQCVQFHAAALKSGAGYITSVSNALVSVYSKCASSPSLLHSARKVFDEIL 215
Query: 282 DRNLVCWNAMILGHCIHGKPEEGIKL------------FTALVNGTVAGG---------- 319
+++ W M+ G+ +G + G +L + A+++G V G
Sbjct: 216 EKDERSWTTMMTGYVKNGYFDLGEELLEGMDDNMKLVAYNAMISGYVNRGFYQEALEMVR 275
Query: 320 -----SISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYW--CMANLYA 372
I DE T+ VI AC A LL G +Q+ + + +F+ ++ + +LY
Sbjct: 276 RMVSSGIELDEFTYPSVIRACATAGLLQLG----KQVHAYVLRREDFSFHFDNSLVSLYY 331
Query: 373 GAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDF 432
+EA I KMP + + W +LLS G + + + F +M ++
Sbjct: 332 KCGKFDEARAIFEKMPAKD------LVSWNALLSGYVSSGHIGEAKLI---FKEMKEKNI 382
Query: 433 SRYQFLLNVYAVAGQWEDVARVRELMKK 460
+ +++ A G E+ ++ MK+
Sbjct: 383 LSWMIMISGLAENGFGEEGLKLFSCMKR 410
Score = 88.6 bits (218), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 71/273 (26%), Positives = 111/273 (40%), Gaps = 37/273 (13%)
Query: 42 LVFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTG 101
L+FK + +I + + ++G+ + M + GF P Y F SCA G
Sbjct: 372 LIFKEMKEKNILSWMIMISGLAENGFGEEGLKLFSCMKREGFEPCDYAFSGAIKSCAVLG 431
Query: 102 CVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVS 161
G H LK G D L N+LI MY G ++ AR +F M D +SWN+
Sbjct: 432 AYCNGQQYHAQLLKIGFDSSLSAGNALITMYAKCGVVEEARQVFRTMPCLDSVSWNA--- 488
Query: 162 GHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKT 221
+I+ + G+ ++ ++ EM+K G R + T
Sbjct: 489 ----------------------------LIAALGQHGHGAEAVDVYEEMLKKGIRPDRIT 520
Query: 222 MASVLTACGRSARFNEGRS-VHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSM 280
+ +VLTAC + ++GR + P LIDL + K A+ V +S+
Sbjct: 521 LLTVLTACSHAGLVDQGRKYFDSMETVYRIPPGADHYARLIDLLCRSGKFSDAESVIESL 580
Query: 281 ADRNLV-CWNAMILGHCIHGKPEEGI----KLF 308
+ W A++ G +HG E GI KLF
Sbjct: 581 PFKPTAEIWEALLSGCRVHGNMELGIIAADKLF 613
Score = 44.7 bits (104), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/112 (23%), Positives = 49/112 (43%), Gaps = 9/112 (8%)
Query: 231 RSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNA 290
R R+VHG + +P + LID+Y K ++ A+++FD +++ + +
Sbjct: 26 RRTSLQLARAVHGNIITFGFQPRAHILNRLIDVYCKSSELNYARQLFDEISEPDKIARTT 85
Query: 291 MILGHCIHGKPEEGIKLF---------TALVNGTVAGGSISPDEITFIGVIC 333
M+ G+C G +F T + N + G S + D + I + C
Sbjct: 86 MVSGYCASGDITLARGVFEKAPVCMRDTVMYNAMITGFSHNNDGYSAINLFC 137
>sp|Q9SIT7|PP151_ARATH Pentatricopeptide repeat-containing protein At2g13600
OS=Arabidopsis thaliana GN=PCMP-E76 PE=3 SV=1
Length = 697
Score = 235 bits (600), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 139/477 (29%), Positives = 243/477 (50%), Gaps = 18/477 (3%)
Query: 7 IQAH-LITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSNS 65
+Q H LI F ++ + L+ + G+ + VF + + N++I + +
Sbjct: 172 VQVHSLIAKSPFLSDVYIGSALVDMYSKCGNVNDAQRVFDEMGDRNVVSWNSLITCFEQN 231
Query: 66 CVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNG-VDFELPV 124
+ + + M+++ P+ T S+ +CA ++ G HG +KN + ++ +
Sbjct: 232 GPAVEALDVFQMMLESRVEPDEVTLASVISACASLSAIKVGQEVHGRVVKNDKLRNDIIL 291
Query: 125 MNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNV 184
N+ ++MY + AR +F M R++I+ S++SG+ + AA +F M ERNV
Sbjct: 292 SNAFVDMYAKCSRIKEARFIFDSMPIRNVIAETSMISGYAMAASTKAARLMFTKMAERNV 351
Query: 185 VSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSV--- 241
VSWN +I+GY+++G +L LF + + + A++L AC A + G
Sbjct: 352 VSWNALIAGYTQNGENEEALSLFCLLKRESVCPTHYSFANILKACADLAELHLGMQAHVH 411
Query: 242 ---HGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIH 298
HG+ ++ + +I + +LID+Y KC VE VF M +R+ V WNAMI+G +
Sbjct: 412 VLKHGFKFQSGEEDDIFVGNSLIDMYVKCGCVEEGYLVFRKMMERDCVSWNAMIIGFAQN 471
Query: 299 GKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIK 358
G E ++LF ++ PD IT IGV+ AC A + EGR YF M + +
Sbjct: 472 GYGNEALELFREMLE-----SGEKPDHITMIGVLSACGHAGFVEEGRHYFSSMTRDFGVA 526
Query: 359 PNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVE 418
P HY CM +L A EEA+ ++ +MP M +S++W SLL+ C+ + + +
Sbjct: 527 PLRDHYTCMVDLLGRAGFLEEAKSMIEEMP-----MQPDSVIWGSLLAACKVHRNITLGK 581
Query: 419 RLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLK 475
+A+ ++++P + Y L N+YA G+WEDV VR+ M+K + + PGC + ++
Sbjct: 582 YVAEKLLEVEPSNSGPYVLLSNMYAELGKWEDVMNVRKSMRKEGVTKQPGCSWIKIQ 638
Score = 169 bits (428), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 98/307 (31%), Positives = 157/307 (51%), Gaps = 6/307 (1%)
Query: 86 NSYTFVSLFGSCAKTGCVE-RGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNM 144
+S F L SC K+ H +K+G E+ + N LI+ Y G+++ R +
Sbjct: 18 DSSPFAKLLDSCIKSKLSAIYVRYVHASVIKSGFSNEIFIQNRLIDAYSKCGSLEDGRQV 77
Query: 145 FVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSL 204
F +M R++ +WNS+V+G + G + A LF MPER+ +WN M+SG+++ +L
Sbjct: 78 FDKMPQRNIYTWNSVVTGLTKLGFLDEADSLFRSMPERDQCTWNSMVSGFAQHDRCEEAL 137
Query: 205 KLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLY 264
F M K GF N+ + ASVL+AC N+G VH ++ ++ + +AL+D+Y
Sbjct: 138 CYFAMMHKEGFVLNEYSFASVLSACSGLNDMNKGVQVHSLIAKSPFLSDVYIGSALVDMY 197
Query: 265 SKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPD 324
SKC V AQRVFD M DRN+V WN++I +G E + +F ++ V PD
Sbjct: 198 SKCGNVNDAQRVFDEMGDRNVVSWNSLITCFEQNGPAVEALDVFQMMLESRV-----EPD 252
Query: 325 EITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEIL 384
E+T VI AC + G++ +++ K++ + ++YA +EA I
Sbjct: 253 EVTLASVISACASLSAIKVGQEVHGRVVKNDKLRNDIILSNAFVDMYAKCSRIKEARFIF 312
Query: 385 RKMPEDN 391
MP N
Sbjct: 313 DSMPIRN 319
Score = 122 bits (306), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 89/371 (23%), Positives = 169/371 (45%), Gaps = 73/371 (19%)
Query: 56 NAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALK 115
N+++ ++ ++ + ++ M K GF+ N Y+F S+ +C+ + +G H L K
Sbjct: 121 NSMVSGFAQHDRCEEALCYFAMMHKEGFVLNEYSFASVLSACSGLNDMNKGVQVHSLIAK 180
Query: 116 NGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHEL 175
+ ++ + ++L++MY G ++ A+ +F +M R+++SWNS
Sbjct: 181 SPFLSDVYIGSALVDMYSKCGNVNDAQRVFDEMGDRNVVSWNS----------------- 223
Query: 176 FDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARF 235
+I+ + ++G +L +F+ M++S ++ T+ASV++AC +
Sbjct: 224 --------------LITCFEQNGPAVEALDVFQMMLESRVEPDEVTLASVISACASLSAI 269
Query: 236 NEGRSVHGYTVRTS-LKPNIILDTALIDLYSKCQKVEVAQRVFDS--------------- 279
G+ VHG V+ L+ +IIL A +D+Y+KC +++ A+ +FDS
Sbjct: 270 KVGQEVHGRVVKNDKLRNDIILSNAFVDMYAKCSRIKEARFIFDSMPIRNVIAETSMISG 329
Query: 280 ----------------MADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISP 323
MA+RN+V WNA+I G+ +G+ EE + LF L S+ P
Sbjct: 330 YAMAASTKAARLMFTKMAERNVVSWNALIAGYTQNGENEEALSLFCLLKR-----ESVCP 384
Query: 324 DEITFIGVICACVR-AELLTEGRKYFRQMIDFYKIKPNFAHYWCMAN----LYAGAELTE 378
+F ++ AC AEL + + + +K + + N +Y E
Sbjct: 385 THYSFANILKACADLAELHLGMQAHVHVLKHGFKFQSGEEDDIFVGNSLIDMYVKCGCVE 444
Query: 379 EAEEILRKMPE 389
E + RKM E
Sbjct: 445 EGYLVFRKMME 455
>sp|Q9SX45|PPR75_ARATH Pentatricopeptide repeat-containing protein At1g50270
OS=Arabidopsis thaliana GN=PCMP-E42 PE=2 SV=1
Length = 596
Score = 233 bits (593), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 140/472 (29%), Positives = 232/472 (49%), Gaps = 43/472 (9%)
Query: 5 LQIQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSN 64
Q AH++ GL ++ F +L+ + G D+ +F + A+I +
Sbjct: 123 FQFHAHIVKFGLD-SDPFVRNSLISGYSSSGLFDFASRLFDGAEDKDVVTWTAMIDGFVR 181
Query: 65 SCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNG-VDFELP 123
+ + +V++++M K G N T VS+ + K V G HGL L+ G V ++
Sbjct: 182 NGSASEAMVYFVEMKKTGVAANEMTVVSVLKAAGKVEDVRFGRSVHGLYLETGRVKCDVF 241
Query: 124 VMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERN 183
+ +SL++MYG D A ++FD MP RN
Sbjct: 242 IGSSLVDMYGKCSCYD-------------------------------DAQKVFDEMPSRN 270
Query: 184 VVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHG 243
VV+W +I+GY +S + +F EM+KS N+KT++SVL+AC + GR VH
Sbjct: 271 VVTWTALIAGYVQSRCFDKGMLVFEEMLKSDVAPNEKTLSSVLSACAHVGALHRGRRVHC 330
Query: 244 YTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEE 303
Y ++ S++ N T LIDLY KC +E A VF+ + ++N+ W AMI G HG +
Sbjct: 331 YMIKNSIEINTTAGTTLIDLYVKCGCLEEAILVFERLHEKNVYTWTAMINGFAAHGYARD 390
Query: 304 GIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAH 363
LF +++ V SP+E+TF+ V+ AC L+ EGR+ F M + ++P H
Sbjct: 391 AFDLFYTMLSSHV-----SPNEVTFMAVLSACAHGGLVEEGRRLFLSMKGRFNMEPKADH 445
Query: 364 YWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKS 423
Y CM +L+ L EEA+ ++ +MP + N ++W +L C + + A
Sbjct: 446 YACMVDLFGRKGLLEEAKALIERMPMEPTN-----VVWGALFGSCLLHKDYELGKYAASR 500
Query: 424 FVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLK 475
+ + P RY L N+Y+ + W++VARVR+ MK +++ + PG +++K
Sbjct: 501 VIKLQPSHSGRYTLLANLYSESQNWDEVARVRKQMKDQQVVKSPGFSWIEVK 552
Score = 128 bits (321), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 96/339 (28%), Positives = 155/339 (45%), Gaps = 41/339 (12%)
Query: 56 NAVIKAYSNSCVPDQGVVF--YLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLA 113
+++I +S ++ + F Y M +NG +P+ +TF L + K H
Sbjct: 71 DSLIGHFSGGITLNRRLSFLAYRHMRRNGVIPSRHTFPPLLKAVFKLR-DSNPFQFHAHI 129
Query: 114 LKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAH 173
+K G+D + V NSLI+ Y G D A +F +D+++W +++ G VR+G S A
Sbjct: 130 VKFGLDSDPFVRNSLISGYSSSGLFDFASRLFDGAEDKDVVTWTAMIDGFVRNGSASEA- 188
Query: 174 ELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSA 233
+ F EM K+G N+ T+ SVL A G+
Sbjct: 189 ------------------------------MVYFVEMKKTGVAANEMTVVSVLKAAGKVE 218
Query: 234 RFNEGRSVHGYTVRTS-LKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMI 292
GRSVHG + T +K ++ + ++L+D+Y KC + AQ+VFD M RN+V W A+I
Sbjct: 219 DVRFGRSVHGLYLETGRVKCDVFIGSSLVDMYGKCSCYDDAQKVFDEMPSRNVVTWTALI 278
Query: 293 LGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMI 352
G+ ++G+ +F ++ VA P+E T V+ AC L GR+ MI
Sbjct: 279 AGYVQSRCFDKGMLVFEEMLKSDVA-----PNEKTLSSVLSACAHVGALHRGRRVHCYMI 333
Query: 353 DFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDN 391
I+ N + +LY EEA + ++ E N
Sbjct: 334 K-NSIEINTTAGTTLIDLYVKCGCLEEAILVFERLHEKN 371
>sp|A8MQA3|PP330_ARATH Pentatricopeptide repeat-containing protein At4g21065
OS=Arabidopsis thaliana GN=PCMP-H28 PE=2 SV=2
Length = 595
Score = 232 bits (591), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 139/489 (28%), Positives = 248/489 (50%), Gaps = 45/489 (9%)
Query: 1 MKQLLQIQAHLITSGLFFNNSFWTINLLKHSADFGSP---DYTVLVFKCINNP-GTFCVN 56
+ +L QI A I G+ +++ +L+ + SP Y VF I P F N
Sbjct: 30 ITKLRQIHAFSIRHGVSISDAELGKHLIFYLVSLPSPPPMSYAHKVFSKIEKPINVFIWN 89
Query: 57 AVIKAYSNSCVPDQGVVFYLQMIKNGFM-PNSYTFVSLFGSCAKTGCVERGGMCHGLALK 115
+I+ Y+ Y +M +G + P+++T+ L + V G H + ++
Sbjct: 90 TLIRGYAEIGNSISAFSLYREMRVSGLVEPDTHTYPFLIKAVTTMADVRLGETIHSVVIR 149
Query: 116 NGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHEL 175
+G + V NSL+++Y +C GD+++A+++
Sbjct: 150 SGFGSLIYVQNSLLHLYA-----NC--------------------------GDVASAYKV 178
Query: 176 FDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARF 235
FD MPE+++V+WN +I+G++++G P +L L+ EM G + + T+ S+L+AC +
Sbjct: 179 FDKMPEKDLVAWNSVINGFAENGKPEEALALYTEMNSKGIKPDGFTIVSLLSACAKIGAL 238
Query: 236 NEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGH 295
G+ VH Y ++ L N+ L+DLY++C +VE A+ +FD M D+N V W ++I+G
Sbjct: 239 TLGKRVHVYMIKVGLTRNLHSSNVLLDLYARCGRVEEAKTLFDEMVDKNSVSWTSLIVGL 298
Query: 296 CIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFY 355
++G +E I+LF + + + P EITF+G++ AC ++ EG +YFR+M + Y
Sbjct: 299 AVNGFGKEAIELFKYMESTE----GLLPCEITFVGILYACSHCGMVKEGFEYFRRMREEY 354
Query: 356 KIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVA 415
KI+P H+ CM +L A A ++A E ++ MP M ++W +LL C G
Sbjct: 355 KIEPRIEHFGCMVDLLARAGQVKKAYEYIKSMP-----MQPNVVIWRTLLGACTVHGDSD 409
Query: 416 MVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLK 475
+ E + ++P Y L N+YA +W DV ++R+ M + + ++PG LV++
Sbjct: 410 LAEFARIQILQLEPNHSGDYVLLSNMYASEQRWSDVQKIRKQMLRDGVKKVPGHSLVEVG 469
Query: 476 EVVEKLKVG 484
V + +G
Sbjct: 470 NRVHEFLMG 478
>sp|Q38959|PP257_ARATH Pentatricopeptide repeat-containing protein At3g26630,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-A6 PE=2
SV=1
Length = 455
Score = 231 bits (590), Expect = 8e-60, Method: Compositional matrix adjust.
Identities = 134/396 (33%), Positives = 206/396 (52%), Gaps = 7/396 (1%)
Query: 3 QLLQIQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAY 62
QL QI +I L N+ L+ S+ FG Y LVF + +P TF N +I++
Sbjct: 35 QLKQIHTKIIKHNLT-NDQLLVRQLISVSSSFGETQYASLVFNQLQSPSTFTWNLMIRSL 93
Query: 63 SNSCVPDQGVV-FYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFE 121
S + P + ++ F L MI + + +TF + +C + + G HGLA+K G +
Sbjct: 94 SVNHKPREALLLFILMMISHQSQFDKFTFPFVIKACLASSSIRLGTQVHGLAIKAGFFND 153
Query: 122 LPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPE 181
+ N+L+++Y G D R +F +M R ++SW +++ G V + + +A +F+ MP
Sbjct: 154 VFFQNTLMDLYFKCGKPDSGRKVFDKMPGRSIVSWTTMLYGLVSNSQLDSAEIVFNQMPM 213
Query: 182 RNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSV 241
RNVVSW MI+ Y K+ P + +LFR M + N+ T+ ++L A + + GR V
Sbjct: 214 RNVVSWTAMITAYVKNRRPDEAFQLFRRMQVDDVKPNEFTIVNLLQASTQLGSLSMGRWV 273
Query: 242 HGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKP 301
H Y + + L TALID+YSKC ++ A++VFD M ++L WN+MI +HG
Sbjct: 274 HDYAHKNGFVLDCFLGTALIDMYSKCGSLQDARKVFDVMQGKSLATWNSMITSLGVHGCG 333
Query: 302 EEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNF 361
EE + LF S+ PD ITF+GV+ AC + +G +YF +MI Y I P
Sbjct: 334 EEALSLFEE----MEEEASVEPDAITFVGVLSACANTGNVKDGLRYFTRMIQVYGISPIR 389
Query: 362 AHYWCMANLYAGAELTEEAEEILRKMPEDND-NMSF 396
H CM L A E+A ++ M D D N SF
Sbjct: 390 EHNACMIQLLEQALEVEKASNLVESMDSDPDFNSSF 425
Score = 43.5 bits (101), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/114 (23%), Positives = 53/114 (46%), Gaps = 4/114 (3%)
Query: 233 ARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMI 292
+ F++ + +H ++ +L + +L LI + S + + A VF+ + + WN MI
Sbjct: 31 SNFSQLKQIHTKIIKHNLTNDQLLVRQLISVSSSFGETQYASLVFNQLQSPSTFTWNLMI 90
Query: 293 LGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRK 346
++ KP E + LF + + D+ TF VI AC+ + + G +
Sbjct: 91 RSLSVNHKPREALLLFILM----MISHQSQFDKFTFPFVIKACLASSSIRLGTQ 140
>sp|Q9C6T2|PPR68_ARATH Pentatricopeptide repeat-containing protein At1g31920
OS=Arabidopsis thaliana GN=PCMP-H11 PE=2 SV=1
Length = 606
Score = 231 bits (589), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 129/448 (28%), Positives = 227/448 (50%), Gaps = 44/448 (9%)
Query: 30 HSADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYT 89
HS S +Y +F+ I++P TF N +I+ Y N ++ + FY +M++ G P+++T
Sbjct: 75 HSGWENSMNYAASIFRGIDDPCTFDFNTMIRGYVNVMSFEEALCFYNEMMQRGNEPDNFT 134
Query: 90 FVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMS 149
+ L +C + + G HG K G++ ++ V NSLINMYG
Sbjct: 135 YPCLLKACTRLKSIREGKQIHGQVFKLGLEADVFVQNSLINMYG---------------- 178
Query: 150 PRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFRE 209
R G+M + +F+ + + SW+ M+S + G L LFR
Sbjct: 179 ---------------RCGEMELSSAVFEKLESKTAASWSSMVSARAGMGMWSECLLLFRG 223
Query: 210 M-MKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQ 268
M ++ + + M S L AC + N G S+HG+ +R + NII+ T+L+D+Y KC
Sbjct: 224 MCSETNLKAEESGMVSALLACANTGALNLGMSIHGFLLRNISELNIIVQTSLVDMYVKCG 283
Query: 269 KVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITF 328
++ A +F M RN + ++AMI G +HG+ E +++F+ ++ + PD + +
Sbjct: 284 CLDKALHIFQKMEKRNNLTYSAMISGLALHGEGESALRMFSKMIK-----EGLEPDHVVY 338
Query: 329 IGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMP 388
+ V+ AC + L+ EGR+ F +M+ K++P HY C+ +L A L EEA E ++ +P
Sbjct: 339 VSVLNACSHSGLVKEGRRVFAEMLKEGKVEPTAEHYGCLVDLLGRAGLLEEALETIQSIP 398
Query: 389 -EDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQ 447
E ND ++W + LS CR + + + + A+ + + + Y + N+Y+
Sbjct: 399 IEKND------VIWRTFLSQCRVRQNIELGQIAAQELLKLSSHNPGDYLLISNLYSQGQM 452
Query: 448 WEDVARVRELMKKRRMGRMPGCRLVDLK 475
W+DVAR R + + + + PG +V+LK
Sbjct: 453 WDDVARTRTEIAIKGLKQTPGFSIVELK 480
>sp|P0C8Q8|PP394_ARATH Pentatricopeptide repeat-containing protein At5g19020,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-E42 PE=2
SV=1
Length = 685
Score = 231 bits (588), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 135/397 (34%), Positives = 209/397 (52%), Gaps = 14/397 (3%)
Query: 69 DQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSL 128
D+ +V+Y +M++ G P+ V L + A++ +G HG +K G D + ++
Sbjct: 287 DEALVYYTEMLRCGMKPSEVMMVDLLSASARSVGSSKGLQLHGTIVKRGFDCYDFLQATI 346
Query: 129 INMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWN 188
I+ Y + A F + S N++++G V++G + A E+FD ++++ SWN
Sbjct: 347 IHFYAVSNDIKLALQQFEASVKDHIASRNALIAGFVKNGMVEQAREVFDQTHDKDIFSWN 406
Query: 189 IMISGYSKSGNPGCSLKLFREMMKSG-FRGNDKTMASVLTACGRSARFNEGRSVHGYTVR 247
MISGY++S +P +L LFREM+ S + + TM SV +A EG+ H Y
Sbjct: 407 AMISGYAQSLSPQLALHLFREMISSSQVKPDAITMVSVFSAISSLGSLEEGKRAHDYLNF 466
Query: 248 TSLKPNIILDTALIDLYSKCQKVEVAQRVF---DSMADRNLVCWNAMILGHCIHGKPEEG 304
+++ PN L A+ID+Y+KC +E A +F +++ + WNA+I G HG +
Sbjct: 467 STIPPNDNLTAAIIDMYAKCGSIETALNIFHQTKNISSSTISPWNAIICGSATHGHAKLA 526
Query: 305 IKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHY 364
+ L++ L I P+ ITF+GV+ AC A L+ G+ YF M + I+P+ HY
Sbjct: 527 LDLYSDL-----QSLPIKPNSITFVGVLSACCHAGLVELGKTYFESMKSDHGIEPDIKHY 581
Query: 365 WCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSF 424
CM +L A EEA+E+++KMP D M +W LLS R G V + E A
Sbjct: 582 GCMVDLLGKAGRLEEAKEMIKKMPVKADVM-----IWGMLLSASRTHGNVEIAELAATEL 636
Query: 425 VDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKR 461
+DP L NVYA AG+WEDVA VRE M+ R
Sbjct: 637 AAIDPSHGGCKVMLSNVYADAGRWEDVALVREEMRTR 673
Score = 141 bits (356), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 97/370 (26%), Positives = 172/370 (46%), Gaps = 38/370 (10%)
Query: 50 PGTFCVN--AVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGG 107
P CV+ +IK Y+ + + + + +M G M N T ++ +C+ G +
Sbjct: 134 PERSCVSYTTLIKGYAQNNQWSEAMELFREMRNLGIMLNEVTLATVISACSHLGGIWDCR 193
Query: 108 MCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSG 167
M LA+K ++ + V +L++MY + AR +F +M R+L++WN +++G+ ++G
Sbjct: 194 MLQSLAIKLKLEGRVFVSTNLLHMYCLCLCLKDARKLFDEMPERNLVTWNVMLNGYSKAG 253
Query: 168 DMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLT 227
+ A ELFD + E+++VSW MI G + +L + EM++ G + ++ M +L+
Sbjct: 254 LIEQAEELFDQITEKDIVSWGTMIDGCLRKNQLDEALVYYTEMLRCGMKPSEVMMVDLLS 313
Query: 228 ACGRSARFNEGRSVHGYTVR-------------------------------TSLKPNIIL 256
A RS ++G +HG V+ S+K +I
Sbjct: 314 ASARSVGSSKGLQLHGTIVKRGFDCYDFLQATIIHFYAVSNDIKLALQQFEASVKDHIAS 373
Query: 257 DTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTV 316
ALI + K VE A+ VFD D+++ WNAMI G+ P+ + LF +++ +
Sbjct: 374 RNALIAGFVKNGMVEQAREVFDQTHDKDIFSWNAMISGYAQSLSPQLALHLFREMISSS- 432
Query: 317 AGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAEL 376
+ PD IT + V A L EG++ ++F I PN + ++YA
Sbjct: 433 ---QVKPDAITMVSVFSAISSLGSLEEGKRA-HDYLNFSTIPPNDNLTAAIIDMYAKCGS 488
Query: 377 TEEAEEILRK 386
E A I +
Sbjct: 489 IETALNIFHQ 498
Score = 141 bits (356), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 83/264 (31%), Positives = 141/264 (53%), Gaps = 9/264 (3%)
Query: 89 TFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQM 148
VS GSCA + V G H LK+G+D + NS++NMY + A ++F
Sbjct: 43 ALVSALGSCASSNDVTCGRQIHCRVLKSGLDSNGYICNSVLNMYAKCRLLADAESVFRDH 102
Query: 149 SPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFR 208
+ D S+N +V G+VRS + A +LFD+MPER+ VS+ +I GY+++ +++LFR
Sbjct: 103 AKLDSASFNIMVDGYVRSRRLWDALKLFDVMPERSCVSYTTLIKGYAQNNQWSEAMELFR 162
Query: 209 EMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQ 268
EM G N+ T+A+V++AC + R + ++ L+ + + T L+ +Y C
Sbjct: 163 EMRNLGIMLNEVTLATVISACSHLGGIWDCRMLQSLAIKLKLEGRVFVSTNLLHMYCLCL 222
Query: 269 KVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITF 328
++ A+++FD M +RNLV WN M+ G+ G E+ +LF + D +++
Sbjct: 223 CLKDARKLFDEMPERNLVTWNVMLNGYSKAGLIEQAEELFDQITE---------KDIVSW 273
Query: 329 IGVICACVRAELLTEGRKYFRQMI 352
+I C+R L E Y+ +M+
Sbjct: 274 GTMIDGCLRKNQLDEALVYYTEML 297
Score = 67.4 bits (163), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 61/272 (22%), Positives = 113/272 (41%), Gaps = 49/272 (18%)
Query: 43 VFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNG-FMPNSYTFVSLFGSCAKTG 101
VF ++ F NA+I Y+ S P + + +MI + P++ T VS+F + + G
Sbjct: 393 VFDQTHDKDIFSWNAMISGYAQSLSPQLALHLFREMISSSQVKPDAITMVSVFSAISSLG 452
Query: 102 CVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQ---MSPRDLISWNS 158
+E G H + + + ++I+MY G+++ A N+F Q +S + WN+
Sbjct: 453 SLEEGKRAHDYLNFSTIPPNDNLTAAIIDMYAKCGSIETALNIFHQTKNISSSTISPWNA 512
Query: 159 IVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGN 218
I+ G SA H G+ +L L+ ++ + N
Sbjct: 513 IICG-------SATH------------------------GHAKLALDLYSDLQSLPIKPN 541
Query: 219 DKTMASVLTACGRS-------ARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVE 271
T VL+AC + F +S HG ++P+I ++DL K ++E
Sbjct: 542 SITFVGVLSACCHAGLVELGKTYFESMKSDHG------IEPDIKHYGCMVDLLGKAGRLE 595
Query: 272 VAQRVFDSMADR-NLVCWNAMILGHCIHGKPE 302
A+ + M + +++ W ++ HG E
Sbjct: 596 EAKEMIKKMPVKADVMIWGMLLSASRTHGNVE 627
Score = 48.1 bits (113), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 49/231 (21%), Positives = 90/231 (38%), Gaps = 58/231 (25%)
Query: 218 NDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVF 277
++ + S L +C S GR +H +++ L N + +++++Y+KC+ + A+ VF
Sbjct: 40 TERALVSALGSCASSNDVTCGRQIHCRVLKSGLDSNGYICNSVLNMYAKCRLLADAESVF 99
Query: 278 DSMADRNLVCWNAMILGHCIHGKPEEGIKLF-----------TALVNGTVAGGSISP--- 323
A + +N M+ G+ + + +KLF T L+ G S
Sbjct: 100 RDHAKLDSASFNIMVDGYVRSRRLWDALKLFDVMPERSCVSYTTLIKGYAQNNQWSEAME 159
Query: 324 ------------DEITFIGVICAC--------------VRAELLTEGRKYF--------- 348
+E+T VI AC + +L EGR +
Sbjct: 160 LFREMRNLGIMLNEVTLATVISACSHLGGIWDCRMLQSLAIKLKLEGRVFVSTNLLHMYC 219
Query: 349 --------RQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDN 391
R++ D + N + M N Y+ A L E+AEE+ ++ E +
Sbjct: 220 LCLCLKDARKLFDEMP-ERNLVTWNVMLNGYSKAGLIEQAEELFDQITEKD 269
>sp|P0C8Q2|PP323_ARATH Pentatricopeptide repeat-containing protein At4g19191,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-E1 PE=2
SV=1
Length = 654
Score = 231 bits (588), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 139/464 (29%), Positives = 229/464 (49%), Gaps = 46/464 (9%)
Query: 35 GSPDYTVLVFKCINNPGTFCV--NAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVS 92
G D LVF+ I+ V N++ KAYS Y M++ F P+ TF++
Sbjct: 202 GDLDSAKLVFEAIDRGDRTVVSWNSMFKAYSVFGEAFDAFGLYCLMLREEFKPDLSTFIN 261
Query: 93 LFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRD 152
L SC + +G + H A+ G D ++ +N+ I+MY
Sbjct: 262 LAASCQNPETLTQGRLIHSHAIHLGTDQDIEAINTFISMYS------------------- 302
Query: 153 LISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMK 212
+S D +A LFDIM R VSW +MISGY++ G+ +L LF M+K
Sbjct: 303 ------------KSEDTCSARLLFDIMTSRTCVSWTVMISGYAEKGDMDEALALFHAMIK 350
Query: 213 SGFRGNDKTMASVLTACGRSARFNEGRSVHGYT-VRTSLKPNIILDTALIDLYSKCQKVE 271
SG + + T+ S+++ CG+ G+ + + + N+++ ALID+YSKC +
Sbjct: 351 SGEKPDLVTLLSLISGCGKFGSLETGKWIDARADIYGCKRDNVMICNALIDMYSKCGSIH 410
Query: 272 VAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGV 331
A+ +FD+ ++ +V W MI G+ ++G E +KLF+ +++ P+ ITF+ V
Sbjct: 411 EARDIFDNTPEKTVVTWTTMIAGYALNGIFLEALKLFSKMID-----LDYKPNHITFLAV 465
Query: 332 ICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDN 391
+ AC + L +G +YF M Y I P HY CM +L EEA E++R M
Sbjct: 466 LQACAHSGSLEKGWEYFHIMKQVYNISPGLDHYSCMVDLLGRKGKLEEALELIRNMSAKP 525
Query: 392 DNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDV 451
D + +W +LL+ C+ V + E+ A+S +++PQ + Y + N+YA AG W+
Sbjct: 526 D-----AGIWGALLNACKIHRNVKIAEQAAESLFNLEPQMAAPYVEMANIYAAAGMWDGF 580
Query: 452 ARVRELMKKRRMGRMPGCRLVDLKEVVEKLKVGHFWRGGMKEEV 495
AR+R +MK+R + + PG ++ + VG G ++ EV
Sbjct: 581 ARIRSIMKQRNIKKYPGESVIQVNGKNHSFTVGE--HGHVENEV 622
Score = 121 bits (304), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 98/423 (23%), Positives = 169/423 (39%), Gaps = 43/423 (10%)
Query: 7 IQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSNSC 66
+ AHLI S F+++ F + S DY VF+ + NA++ + S
Sbjct: 74 VHAHLIKSP-FWSDVFVGTATVDMFVKCNSVDYAAKVFERMPERDATTWNAMLSGFCQSG 132
Query: 67 VPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMN 126
D+ + +M N P+S T ++L S + ++ H + ++ GVD ++ V N
Sbjct: 133 HTDKAFSLFREMRLNEITPDSVTVMTLIQSASFEKSLKLLEAMHAVGIRLGVDVQVTVAN 192
Query: 127 SLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVS 186
+ I+ YG G +D A+ +F + D R VVS
Sbjct: 193 TWISTYGKCGDLDSAKLVFEAIDRGD-----------------------------RTVVS 223
Query: 187 WNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTV 246
WN M YS G + L+ M++ F+ + T ++ +C +GR +H + +
Sbjct: 224 WNSMFKAYSVFGEAFDAFGLYCLMLREEFKPDLSTFINLAASCQNPETLTQGRLIHSHAI 283
Query: 247 RTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIK 306
+I I +YSK + A+ +FD M R V W MI G+ G +E +
Sbjct: 284 HLGTDQDIEAINTFISMYSKSEDTCSARLLFDIMTSRTCVSWTVMISGYAEKGDMDEALA 343
Query: 307 LFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIK-PNFAHYW 365
LF A++ PD +T + +I C + L G K+ D Y K N
Sbjct: 344 LFHAMIK-----SGEKPDLVTLLSLISGCGKFGSLETG-KWIDARADIYGCKRDNVMICN 397
Query: 366 CMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFV 425
+ ++Y+ EA +I PE + W ++++ G +L +
Sbjct: 398 ALIDMYSKCGSIHEARDIFDNTPEKT------VVTWTTMIAGYALNGIFLEALKLFSKMI 451
Query: 426 DMD 428
D+D
Sbjct: 452 DLD 454
Score = 96.7 bits (239), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 71/295 (24%), Positives = 128/295 (43%), Gaps = 44/295 (14%)
Query: 56 NAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAK---TGCVERGGMCHGL 112
N I+ N P + ++ + +M + GF PN++TF + +CA+ GC E M H
Sbjct: 21 NLQIREAVNRNDPVESLLLFREMKRGGFEPNNFTFPFVAKACARLADVGCCE---MVHAH 77
Query: 113 ALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAA 172
+K+ ++ V + ++M+ ++D A +F +M RD +WN+++SG +SG A
Sbjct: 78 LIKSPFWSDVFVGTATVDMFVKCNSVDYAAKVFERMPERDATTWNAMLSGFCQSGHTDKA 137
Query: 173 HELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRS 232
LF M + ++ + +S + SLKL M
Sbjct: 138 FSLFREMRLNEITPDSVTVMTLIQSASFEKSLKLLEAM---------------------- 175
Query: 233 ARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSM--ADRNLVCWNA 290
H +R + + + I Y KC ++ A+ VF+++ DR +V WN+
Sbjct: 176 ---------HAVGIRLGVDVQVTVANTWISTYGKCGDLDSAKLVFEAIDRGDRTVVSWNS 226
Query: 291 MILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGR 345
M + + G+ + L+ ++ PD TFI + +C E LT+GR
Sbjct: 227 MFKAYSVFGEAFDAFGLYCLMLR-----EEFKPDLSTFINLAASCQNPETLTQGR 276
Score = 94.0 bits (232), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 53/165 (32%), Positives = 83/165 (50%), Gaps = 6/165 (3%)
Query: 169 MSAAHE-LFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLT 227
MS H L+ I +V +WN+ I +P SL LFREM + GF N+ T V
Sbjct: 1 MSLIHRRLYRISGLSSVNAWNLQIREAVNRNDPVESLLLFREMKRGGFEPNNFTFPFVAK 60
Query: 228 ACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVC 287
AC R A VH + +++ ++ + TA +D++ KC V+ A +VF+ M +R+
Sbjct: 61 ACARLADVGCCEMVHAHLIKSPFWSDVFVGTATVDMFVKCNSVDYAAKVFERMPERDATT 120
Query: 288 WNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVI 332
WNAM+ G C G ++ LF + I+PD +T + +I
Sbjct: 121 WNAMLSGFCQSGHTDKAFSLFREM-----RLNEITPDSVTVMTLI 160
>sp|Q9SJK9|PP189_ARATH Pentatricopeptide repeat-containing protein At2g36980,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-E73 PE=2
SV=1
Length = 625
Score = 229 bits (585), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 132/455 (29%), Positives = 229/455 (50%), Gaps = 14/455 (3%)
Query: 53 FCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSC-AKTGCVERGGMCHG 111
F N +I +++ + + + +M+++ F P+ YTF SL +C A + V G M H
Sbjct: 170 FAWNIMISGHAHCGKLESCLSLFKEMLESEFKPDCYTFSSLMNACSADSSNVVYGRMVHA 229
Query: 112 LALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSA 171
+ LKNG + NS+++ Y G+ D A + +SWNSI+ ++ G+
Sbjct: 230 VMLKNGWSSAVEAKNSVLSFYTKLGSRDDAMRELESIEVLTQVSWNSIIDACMKIGETEK 289
Query: 172 AHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGR 231
A E+F + PE+N+V+W MI+GY ++G+ +L+ F EMMKSG + +VL AC
Sbjct: 290 ALEVFHLAPEKNIVTWTTMITGYGRNGDGEQALRFFVEMMKSGVDSDHFAYGAVLHACSG 349
Query: 232 SARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAM 291
A G+ +HG + + + AL++LY+KC ++ A R F +A+++LV WN M
Sbjct: 350 LALLGHGKMIHGCLIHCGFQGYAYVGNALVNLYAKCGDIKEADRAFGDIANKDLVSWNTM 409
Query: 292 ILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQM 351
+ +HG ++ +KL+ + +A G I PD +TFIG++ C + L+ EG F M
Sbjct: 410 LFAFGVHGLADQALKLY----DNMIASG-IKPDNVTFIGLLTTCSHSGLVEEGCMIFESM 464
Query: 352 IDFYKIKPNFAHYWCMANLYAGAELTEEAEEI---LRKMPEDNDNMSFESIMWVSLLSLC 408
+ Y+I H CM +++ EA+++ + D+ N S W +LL C
Sbjct: 465 VKDYRIPLEVDHVTCMIDMFGRGGHLAEAKDLATTYSSLVTDSSNNS----SWETLLGAC 520
Query: 409 RFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPG 468
+ ++K +P + + L N+Y G+W++ VR M +R M + PG
Sbjct: 521 STHWHTELGREVSKVLKIAEPSEEMSFVLLSNLYCSTGRWKEGEDVRREMVERGMKKTPG 580
Query: 469 CRLVDLKEVVEKLKVGHFWRGGMKEEVNKMMECRQ 503
C +++ V VG + EE+++ + C Q
Sbjct: 581 CSWIEVGNQVSTFVVGDSSHPRL-EELSETLNCLQ 614
Score = 130 bits (327), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 98/377 (25%), Positives = 167/377 (44%), Gaps = 48/377 (12%)
Query: 43 VFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGC 102
VF + T N ++ +YS + + + + Q+ + P+ Y+F ++ +CA G
Sbjct: 26 VFDGMPELDTVAWNTMLTSYSRLGLHQEAIALFTQLRFSDAKPDDYSFTAILSTCASLGN 85
Query: 103 VERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQM--SPRDLISWNSIV 160
V+ G L +++G LPV NSLI+MYG A +F M R+ ++W S++
Sbjct: 86 VKFGRKIQSLVIRSGFCASLPVNNSLIDMYGKCSDTLSANKVFRDMCCDSRNEVTWCSLL 145
Query: 161 SGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDK 220
++ + AA ++F MP+R +WNIMISG++ G L LF+EM++S F+ +
Sbjct: 146 FAYMNAEQFEAALDVFVEMPKRVAFAWNIMISGHAHCGKLESCLSLFKEMLESEFKPDCY 205
Query: 221 TMASVLTAC-GRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSK------------- 266
T +S++ AC S+ GR VH ++ + +++ Y+K
Sbjct: 206 TFSSLMNACSADSSNVVYGRMVHAVMLKNGWSSAVEAKNSVLSFYTKLGSRDDAMRELES 265
Query: 267 ---------------CQKV---EVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLF 308
C K+ E A VF ++N+V W MI G+ +G E+ ++ F
Sbjct: 266 IEVLTQVSWNSIIDACMKIGETEKALEVFHLAPEKNIVTWTTMITGYGRNGDGEQALRFF 325
Query: 309 TALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYW--- 365
++ + D + V+ AC LL G+ MI I F Y
Sbjct: 326 VEMMK-----SGVDSDHFAYGAVLHACSGLALLGHGK-----MIHGCLIHCGFQGYAYVG 375
Query: 366 -CMANLYAGAELTEEAE 381
+ NLYA +EA+
Sbjct: 376 NALVNLYAKCGDIKEAD 392
Score = 87.8 bits (216), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 55/216 (25%), Positives = 95/216 (43%), Gaps = 38/216 (17%)
Query: 153 LISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMK 212
L+ S ++ +SG +++A ++FD MPE + V+WN M++ YS+ G ++ LF ++
Sbjct: 4 LVRLTSKIASLAKSGRIASARQVFDGMPELDTVAWNTMLTSYSRLGLHQEAIALFTQLRF 63
Query: 213 SGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKC----- 267
S + +D + ++L+ C GR + +R+ ++ ++ +LID+Y KC
Sbjct: 64 SDAKPDDYSFTAILSTCASLGNVKFGRKIQSLVIRSGFCASLPVNNSLIDMYGKCSDTLS 123
Query: 268 ----------------------------QKVEVAQRVFDSMADRNLVCWNAMILGHCIHG 299
++ E A VF M R WN MI GH G
Sbjct: 124 ANKVFRDMCCDSRNEVTWCSLLFAYMNAEQFEAALDVFVEMPKRVAFAWNIMISGHAHCG 183
Query: 300 KPEEGIKLFTALVNGTVAGGSISPDEITFIGVICAC 335
K E + LF ++ PD TF ++ AC
Sbjct: 184 KLESCLSLFKEMLE-----SEFKPDCYTFSSLMNAC 214
Score = 64.7 bits (156), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 49/234 (20%), Positives = 94/234 (40%), Gaps = 32/234 (13%)
Query: 34 FGSPDYTVLVFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSL 93
G + + VF +I Y + +Q + F+++M+K+G + + + ++
Sbjct: 284 IGETEKALEVFHLAPEKNIVTWTTMITGYGRNGDGEQALRFFVEMMKSGVDSDHFAYGAV 343
Query: 94 FGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDL 153
+C+ + G M HG + G V N+L+N+Y G + A F ++ +DL
Sbjct: 344 LHACSGLALLGHGKMIHGCLIHCGFQGYAYVGNALVNLYAKCGDIKEADRAFGDIANKDL 403
Query: 154 ISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKS 213
+SWN+ M+ + G +LKL+ M+ S
Sbjct: 404 VSWNT-------------------------------MLFAFGVHGLADQALKLYDNMIAS 432
Query: 214 GFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKP-NIILDTALIDLYSK 266
G + ++ T +LT C S EG + V+ P + T +ID++ +
Sbjct: 433 GIKPDNVTFIGLLTTCSHSGLVEEGCMIFESMVKDYRIPLEVDHVTCMIDMFGR 486
>sp|Q9FIF7|PP435_ARATH Putative pentatricopeptide repeat-containing protein At5g59200,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-E41 PE=3
SV=1
Length = 544
Score = 229 bits (583), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 132/465 (28%), Positives = 226/465 (48%), Gaps = 14/465 (3%)
Query: 20 NSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMI 79
++F L++ + S DY VF ++NP + A+I + +S GV Y +MI
Sbjct: 60 DAFVVFELIRVCSTLDSVDYAYDVFSYVSNPNVYLYTAMIDGFVSSGRSADGVSLYHRMI 119
Query: 80 KNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMD 139
N +P++Y S+ +C C E H LK G V ++ +YG G +
Sbjct: 120 HNSVLPDNYVITSVLKACDLKVCRE----IHAQVLKLGFGSSRSVGLKMMEIYGKSGELV 175
Query: 140 CARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGN 199
A+ MF +M RD ++ +++ + G + A ELF + ++ V W MI G ++
Sbjct: 176 NAKKMFDEMPDRDHVAATVMINCYSECGFIKEALELFQDVKIKDTVCWTAMIDGLVRNKE 235
Query: 200 PGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTA 259
+L+LFREM N+ T VL+AC GR VH + ++ + + A
Sbjct: 236 MNKALELFREMQMENVSANEFTAVCVLSACSDLGALELGRWVHSFVENQRMELSNFVGNA 295
Query: 260 LIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGG 319
LI++YS+C + A+RVF M D++++ +N MI G +HG E I F +VN
Sbjct: 296 LINMYSRCGDINEARRVFRVMRDKDVISYNTMISGLAMHGASVEAINEFRDMVN-----R 350
Query: 320 SISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEE 379
P+++T + ++ AC LL G + F M + ++P HY C+ +L EE
Sbjct: 351 GFRPNQVTLVALLNACSHGGLLDIGLEVFNSMKRVFNVEPQIEHYGCIVDLLGRVGRLEE 410
Query: 380 AEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLL 439
A + +P + D+ IM +LLS C+ G + + E++AK + + D Y L
Sbjct: 411 AYRFIENIPIEPDH-----IMLGTLLSACKIHGNMELGEKIAKRLFESENPDSGTYVLLS 465
Query: 440 NVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLKEVVEKLKVG 484
N+YA +G+W++ +RE M+ + + PGC +++ + + VG
Sbjct: 466 NLYASSGKWKESTEIRESMRDSGIEKEPGCSTIEVDNQIHEFLVG 510
Score = 50.8 bits (120), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 66/299 (22%), Positives = 116/299 (38%), Gaps = 66/299 (22%)
Query: 220 KTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDS 279
KT+ SVL +C A S+H +RT + + LI + S V+ A VF
Sbjct: 30 KTLISVLRSCKNIAHVP---SIHAKIIRTFHDQDAFVVFELIRVCSTLDSVDYAYDVFSY 86
Query: 280 MADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICAC---- 335
+++ N+ + AMI G G+ +G+ L+ +++ +V PD V+ AC
Sbjct: 87 VSNPNVYLYTAMIDGFVSSGRSADGVSLYHRMIHNSVL-----PDNYVITSVLKACDLKV 141
Query: 336 ---VRAELLTEG----RKYFRQMIDFYKIK-------------PNFAHYWC--MANLYAG 373
+ A++L G R +M++ Y P+ H M N Y+
Sbjct: 142 CREIHAQVLKLGFGSSRSVGLKMMEIYGKSGELVNAKKMFDEMPDRDHVAATVMINCYSE 201
Query: 374 AELTEEAEEILRKMPEDN-----------------------------DNMSFESIMWVSL 404
+EA E+ + + + +N+S V +
Sbjct: 202 CGFIKEALELFQDVKIKDTVCWTAMIDGLVRNKEMNKALELFREMQMENVSANEFTAVCV 261
Query: 405 LSLCRFQGAVAMVERLAKSFVDMDPQDFSRY--QFLLNVYAVAGQWEDVARVRELMKKR 461
LS C GA+ + R SFV+ + S + L+N+Y+ G + RV +M+ +
Sbjct: 262 LSACSDLGALEL-GRWVHSFVENQRMELSNFVGNALINMYSRCGDINEARRVFRVMRDK 319
>sp|Q0WQW5|PPR85_ARATH Pentatricopeptide repeat-containing protein At1g59720,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H51 PE=2
SV=2
Length = 638
Score = 227 bits (579), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 148/499 (29%), Positives = 246/499 (49%), Gaps = 55/499 (11%)
Query: 1 MKQLLQIQAHLITSGLFFNNS--FWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAV 58
M QL Q+ A + + + F +L+ S+ F +Y VF I N +F N +
Sbjct: 61 MSQLKQLHAFTLRTTYPEEPATLFLYGKILQLSSSFSDVNYAFRVFDSIENHSSFMWNTL 120
Query: 59 IKAYSNSCV-PDQGVVFYLQMIKNG-FMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKN 116
I+A ++ ++ + Y +M++ G P+ +TF + +CA G H +K+
Sbjct: 121 IRACAHDVSRKEEAFMLYRKMLERGESSPDKHTFPFVLKACAYIFGFSEGKQVHCQIVKH 180
Query: 117 GVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELF 176
G ++ V N LI++YG G +D AR ++F
Sbjct: 181 GFGGDVYVNNGLIHLYGSCGCLDLAR-------------------------------KVF 209
Query: 177 DIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFN 236
D MPER++VSWN MI + G +L+LFREM +S F + TM SVL+AC +
Sbjct: 210 DEMPERSLVSWNSMIDALVRFGEYDSALQLFREMQRS-FEPDGYTMQSVLSACAGLGSLS 268
Query: 237 EGRSVHGYTVR---TSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMIL 293
G H + +R + ++++ +LI++Y KC + +A++VF M R+L WNAMIL
Sbjct: 269 LGTWAHAFLLRKCDVDVAMDVLVKNSLIEMYCKCGSLRMAEQVFQGMQKRDLASWNAMIL 328
Query: 294 GHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMID 353
G HG+ EE + F +V+ ++ P+ +TF+G++ AC + +GR+YF M+
Sbjct: 329 GFATHGRAEEAMNFFDRMVDKR---ENVRPNSVTFVGLLIACNHRGFVNKGRQYFDMMVR 385
Query: 354 FYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGA 413
Y I+P HY C+ +L A A EA +++ MP M ++++W SLL C +GA
Sbjct: 386 DYCIEPALEHYGCIVDLIARAGYITEAIDMVMSMP-----MKPDAVIWRSLLDACCKKGA 440
Query: 414 -VAMVERLAKSFVDMDPQDFSR-------YQFLLNVYAVAGQWEDVARVRELMKKRRMGR 465
V + E +A++ + + S Y L VYA A +W DV VR+LM + + +
Sbjct: 441 SVELSEEIARNIIGTKEDNESSNGNCSGAYVLLSRVYASASRWNDVGIVRKLMSEHGIRK 500
Query: 466 MPGCRLVDLKEVVEKLKVG 484
PGC +++ + + G
Sbjct: 501 EPGCSSIEINGISHEFFAG 519
>sp|Q9LTV8|PP224_ARATH Pentatricopeptide repeat-containing protein At3g12770
OS=Arabidopsis thaliana GN=PCMP-H43 PE=2 SV=1
Length = 694
Score = 226 bits (576), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 161/580 (27%), Positives = 275/580 (47%), Gaps = 95/580 (16%)
Query: 3 QLLQIQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAY 62
QL QI A L+ GL F+ F L+ S+ FG + VF + P F NA+I+ Y
Sbjct: 36 QLKQIHARLLVLGLQFSG-FLITKLIHASSSFGDITFARQVFDDLPRPQIFPWNAIIRGY 94
Query: 63 SNS-----------------CVPDQ------------------GVVFYLQMIKNGFMPNS 87
S + PD G + Q+ + GF +
Sbjct: 95 SRNNHFQDALLMYSNMQLARVSPDSFTFPHLLKACSGLSHLQMGRFVHAQVFRLGFDADV 154
Query: 88 YT---FVSLFGSCAKTGCVERGGMCHGLAL----------------KNGVDFE-LPVMN- 126
+ ++L+ C + G + GL L +NG E L + +
Sbjct: 155 FVQNGLIALYAKCRRLGSART--VFEGLPLPERTIVSWTAIVSAYAQNGEPMEALEIFSQ 212
Query: 127 --------------SLINMYGCFGAMDCARN-------MFVQMSPRDLISWNSIVSGHVR 165
S++N + C + R+ M +++ P LIS N++ + +
Sbjct: 213 MRKMDVKPDWVALVSVLNAFTCLQDLKQGRSIHASVVKMGLEIEPDLLISLNTM---YAK 269
Query: 166 SGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASV 225
G ++ A LFD M N++ WN MISGY+K+G ++ +F EM+ R + ++ S
Sbjct: 270 CGQVATAKILFDKMKSPNLILWNAMISGYAKNGYAREAIDMFHEMINKDVRPDTISITSA 329
Query: 226 LTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNL 285
++AC + + RS++ Y R+ + ++ + +ALID+++KC VE A+ VFD DR++
Sbjct: 330 ISACAQVGSLEQARSMYEYVGRSDYRDDVFISSALIDMFAKCGSVEGARLVFDRTLDRDV 389
Query: 286 VCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGR 345
V W+AMI+G+ +HG+ E I L+ A+ G V P+++TF+G++ AC + ++ EG
Sbjct: 390 VVWSAMIVGYGLHGRAREAISLYRAMERGGV-----HPNDVTFLGLLMACNHSGMVREGW 444
Query: 346 KYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLL 405
+F +M D +KI P HY C+ +L A ++A E+++ MP + +W +LL
Sbjct: 445 WFFNRMAD-HKINPQQQHYACVIDLLGRAGHLDQAYEVIKCMP-----VQPGVTVWGALL 498
Query: 406 SLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGR 465
S C+ V + E A+ +DP + Y L N+YA A W+ VA VR MK++ + +
Sbjct: 499 SACKKHRHVELGEYAAQQLFSIDPSNTGHYVQLSNLYAAARLWDRVAEVRVRMKEKGLNK 558
Query: 466 MPGCRLVDLKEVVEKLKVGHFWRGGMKEEVNKMMECRQSR 505
GC V+++ +E +VG EE+ + +E +SR
Sbjct: 559 DVGCSWVEVRGRLEAFRVGDK-SHPRYEEIERQVEWIESR 597
Score = 80.5 bits (197), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 82/394 (20%), Positives = 150/394 (38%), Gaps = 75/394 (19%)
Query: 1 MKQLLQIQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIK 60
+KQ I A ++ GL I+L A G ++F + +P NA+I
Sbjct: 238 LKQGRSIHASVVKMGLEIEPDL-LISLNTMYAKCGQVATAKILFDKMKSPNLILWNAMIS 296
Query: 61 AYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDF 120
Y+ + + + + +MI P++ + S +CA+ G +E+ + ++
Sbjct: 297 GYAKNGYAREAIDMFHEMINKDVRPDTISITSAISACAQVGSLEQARSMYEYVGRSDYRD 356
Query: 121 ELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMP 180
++ + ++LI+M+ G+++ AR +F + RD++ W++
Sbjct: 357 DVFISSALIDMFAKCGSVEGARLVFDRTLDRDVVVWSA---------------------- 394
Query: 181 ERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRS 240
MI GY G ++ L+R M + G ND T +L AC S EG
Sbjct: 395 ---------MIVGYGLHGRAREAISLYRAMERGGVHPNDVTFLGLLMACNHSGMVREGWW 445
Query: 241 VHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGK 300
+ P +IDL + ++ A V C+ +
Sbjct: 446 FFNRMADHKINPQQQHYACVIDLLGRAGHLDQAYEVIK-----------------CMPVQ 488
Query: 301 PEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKP- 359
P G+ ++ AL++ AC + + G +Q+ + I P
Sbjct: 489 P--GVTVWGALLS--------------------ACKKHRHVELGEYAAQQL---FSIDPS 523
Query: 360 NFAHYWCMANLYAGAELTEEAEEILRKMPEDNDN 393
N HY ++NLYA A L + E+ +M E N
Sbjct: 524 NTGHYVQLSNLYAAARLWDRVAEVRVRMKEKGLN 557
Score = 42.0 bits (97), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 32/128 (25%), Positives = 60/128 (46%), Gaps = 8/128 (6%)
Query: 218 NDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVF 277
+D AS++ + A+ + +H + L+ + L T LI S + A++VF
Sbjct: 20 SDSFYASLIDSATHKAQLKQ---IHARLLVLGLQFSGFLITKLIHASSSFGDITFARQVF 76
Query: 278 DSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVR 337
D + + WNA+I G+ + ++ + +++ N +A +SPD TF ++ AC
Sbjct: 77 DDLPRPQIFPWNAIIRGYSRNNHFQDALLMYS---NMQLA--RVSPDSFTFPHLLKACSG 131
Query: 338 AELLTEGR 345
L GR
Sbjct: 132 LSHLQMGR 139
>sp|Q9C866|PPR65_ARATH Pentatricopeptide repeat-containing protein At1g31430
OS=Arabidopsis thaliana GN=PCMP-E55 PE=2 SV=1
Length = 570
Score = 226 bits (575), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 145/498 (29%), Positives = 252/498 (50%), Gaps = 15/498 (3%)
Query: 6 QIQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAY-SN 64
++ + + +GL F+ S+ + +L+ A G + T VF + N +I +Y N
Sbjct: 67 KVHGYAVKAGLEFD-SYVSNSLMGMYASLGKIEITHKVFDEMPQRDVVSWNGLISSYVGN 125
Query: 65 SCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPV 124
D VF ++ + T VS +C+ +E G + + +FE+ V
Sbjct: 126 GRFEDAIGVFKRMSQESNLKFDEGTIVSTLSACSALKNLEIGERIYRFVV---TEFEMSV 182
Query: 125 M--NSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPER 182
N+L++M+ G +D AR +F M +++ W S+V G+V +G + A LF+ P +
Sbjct: 183 RIGNALVDMFCKCGCLDKARAVFDSMRDKNVKCWTSMVFGYVSTGRIDEARVLFERSPVK 242
Query: 183 NVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVH 242
+VV W M++GY + +L+LFR M +G R ++ + S+LT C ++ +G+ +H
Sbjct: 243 DVVLWTAMMNGYVQFNRFDEALELFRCMQTAGIRPDNFVLVSLLTGCAQTGALEQGKWIH 302
Query: 243 GYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPE 302
GY + + ++ TAL+D+Y+KC +E A VF + +R+ W ++I G ++G
Sbjct: 303 GYINENRVTVDKVVGTALVDMYAKCGCIETALEVFYEIKERDTASWTSLIYGLAMNGMSG 362
Query: 303 EGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFA 362
+ L+ + N + D ITF+ V+ AC + EGRK F M + + ++P
Sbjct: 363 RALDLYYEMEN-----VGVRLDAITFVAVLTACNHGGFVAEGRKIFHSMTERHNVQPKSE 417
Query: 363 HYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAK 422
H C+ +L A L +EAEE++ KM ++D ++ SLLS R G V + ER+A+
Sbjct: 418 HCSCLIDLLCRAGLLDEAEELIDKMRGESDETLVP--VYCSLLSAARNYGNVKIAERVAE 475
Query: 423 SFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLKEVVEKLK 482
++ D S + L +VYA A +WEDV VR MK + + PGC +++ V +
Sbjct: 476 KLEKVEVSDSSAHTLLASVYASANRWEDVTNVRRKMKDLGIRKFPGCSSIEIDGVGHEFI 535
Query: 483 VGHFWRGGMK-EEVNKMM 499
VG K +E+N M+
Sbjct: 536 VGDDLLSHPKMDEINSML 553
Score = 125 bits (314), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 86/381 (22%), Positives = 169/381 (44%), Gaps = 59/381 (15%)
Query: 47 INNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERG 106
+ P N ++K+ ++ + + + ++ G P+++T + S + V G
Sbjct: 6 LQTPSLLMYNKMLKSLADGKSFTKVLALFGELRGQGLYPDNFTLPVVLKSIGRLRKVIEG 65
Query: 107 GMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRS 166
HG A+K G++F+ V NSL+ MY G ++ +F +M RD++SWN ++S +V +
Sbjct: 66 EKVHGYAVKAGLEFDSYVSNSLMGMYASLGKIEITHKVFDEMPQRDVVSWNGLISSYVGN 125
Query: 167 GDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVL 226
G A +F M + +S + ++ T+ S L
Sbjct: 126 GRFEDAIGVFKRMSQ------------------------------ESNLKFDEGTIVSTL 155
Query: 227 TACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLV 286
+AC G ++ + V T + ++ + AL+D++ KC ++ A+ VFDSM D+N+
Sbjct: 156 SACSALKNLEIGERIYRFVV-TEFEMSVRIGNALVDMFCKCGCLDKARAVFDSMRDKNVK 214
Query: 287 CWNAMILGHCIHGK-----------PEEGIKLFTALVNGTV---------------AGGS 320
CW +M+ G+ G+ P + + L+TA++NG V
Sbjct: 215 CWTSMVFGYVSTGRIDEARVLFERSPVKDVVLWTAMMNGYVQFNRFDEALELFRCMQTAG 274
Query: 321 ISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEA 380
I PD + ++ C + L +G K+ I+ ++ + + ++YA E A
Sbjct: 275 IRPDNFVLVSLLTGCAQTGALEQG-KWIHGYINENRVTVDKVVGTALVDMYAKCGCIETA 333
Query: 381 EEILRKMPEDNDNMSFESIMW 401
E+ ++ E D S+ S+++
Sbjct: 334 LEVFYEIKE-RDTASWTSLIY 353
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.324 0.137 0.425
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 194,295,038
Number of Sequences: 539616
Number of extensions: 8018582
Number of successful extensions: 28377
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 356
Number of HSP's successfully gapped in prelim test: 67
Number of HSP's that attempted gapping in prelim test: 22107
Number of HSP's gapped (non-prelim): 2145
length of query: 523
length of database: 191,569,459
effective HSP length: 122
effective length of query: 401
effective length of database: 125,736,307
effective search space: 50420259107
effective search space used: 50420259107
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 64 (29.3 bits)