Query 038200
Match_columns 523
No_of_seqs 624 out of 3442
Neff 11.3
Searched_HMMs 46136
Date Fri Mar 29 08:36:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038200.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/038200hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03077 Protein ECB2; Provisi 100.0 1.6E-73 3.5E-78 597.8 57.3 487 2-501 204-763 (857)
2 PLN03081 pentatricopeptide (PP 100.0 1.9E-71 4.1E-76 568.8 53.2 485 2-501 104-600 (697)
3 PLN03077 Protein ECB2; Provisi 100.0 2.4E-65 5.1E-70 536.2 47.3 490 2-510 103-695 (857)
4 PLN03218 maturation of RBCL 1; 100.0 8.3E-64 1.8E-68 514.7 50.4 489 2-506 387-914 (1060)
5 PLN03218 maturation of RBCL 1; 100.0 3E-62 6.5E-67 503.2 48.4 450 4-468 425-916 (1060)
6 PLN03081 pentatricopeptide (PP 100.0 6.5E-59 1.4E-63 476.4 43.9 450 2-469 140-612 (697)
7 TIGR02917 PEP_TPR_lipo putativ 100.0 1.2E-30 2.6E-35 280.1 47.0 483 3-510 381-875 (899)
8 TIGR02917 PEP_TPR_lipo putativ 100.0 5.9E-30 1.3E-34 274.9 48.5 473 3-500 415-899 (899)
9 PRK11447 cellulose synthase su 99.9 1.5E-22 3.2E-27 218.4 48.3 483 4-506 47-705 (1157)
10 KOG4626 O-linked N-acetylgluco 99.9 2.6E-23 5.7E-28 191.2 31.4 406 23-448 50-506 (966)
11 KOG4626 O-linked N-acetylgluco 99.9 7.7E-24 1.7E-28 194.7 26.7 468 10-501 7-522 (966)
12 PRK11447 cellulose synthase su 99.9 3.4E-21 7.3E-26 208.0 49.6 412 27-460 275-739 (1157)
13 TIGR00990 3a0801s09 mitochondr 99.9 6.2E-21 1.3E-25 193.5 41.9 256 197-461 307-571 (615)
14 PRK09782 bacteriophage N4 rece 99.9 1.6E-19 3.5E-24 186.5 45.8 168 4-180 63-274 (987)
15 PRK11788 tetratricopeptide rep 99.9 8.7E-21 1.9E-25 182.9 30.9 291 166-469 48-355 (389)
16 PRK10049 pgaA outer membrane p 99.9 6.9E-19 1.5E-23 181.8 44.0 406 18-433 12-462 (765)
17 PRK11788 tetratricopeptide rep 99.9 1.2E-20 2.7E-25 181.9 28.6 290 59-388 42-345 (389)
18 PRK10049 pgaA outer membrane p 99.9 3.8E-19 8.3E-24 183.7 37.8 394 55-461 18-456 (765)
19 PRK15174 Vi polysaccharide exp 99.9 6E-19 1.3E-23 178.4 38.2 355 33-430 17-384 (656)
20 PRK15174 Vi polysaccharide exp 99.9 1.8E-18 3.9E-23 174.9 40.0 318 25-354 46-381 (656)
21 PRK09782 bacteriophage N4 rece 99.9 8.9E-18 1.9E-22 173.8 45.1 478 3-514 126-752 (987)
22 PRK14574 hmsH outer membrane p 99.9 4.4E-17 9.6E-22 165.2 45.5 434 19-461 32-513 (822)
23 TIGR00990 3a0801s09 mitochondr 99.9 2.5E-18 5.4E-23 174.6 36.1 427 55-505 130-575 (615)
24 KOG2002 TPR-containing nuclear 99.8 3.3E-17 7.3E-22 159.2 32.3 431 18-462 267-746 (1018)
25 PRK14574 hmsH outer membrane p 99.8 2.9E-15 6.4E-20 152.1 44.4 420 3-434 52-520 (822)
26 KOG2003 TPR repeat-containing 99.8 2.2E-16 4.8E-21 140.9 30.0 412 19-448 199-710 (840)
27 KOG2002 TPR-containing nuclear 99.8 4.2E-16 9.1E-21 151.7 30.4 446 50-510 268-754 (1018)
28 KOG4422 Uncharacterized conser 99.7 3.8E-14 8.2E-19 125.9 34.3 394 2-465 132-594 (625)
29 KOG0547 Translocase of outer m 99.7 5.8E-14 1.3E-18 126.9 30.0 379 55-460 118-565 (606)
30 PF13429 TPR_15: Tetratricopep 99.7 4.9E-17 1.1E-21 148.5 10.4 261 189-460 13-276 (280)
31 KOG4422 Uncharacterized conser 99.7 1.1E-13 2.3E-18 123.1 29.2 349 18-389 204-589 (625)
32 KOG2003 TPR repeat-containing 99.7 1.3E-13 2.7E-18 123.5 29.1 399 58-469 207-696 (840)
33 KOG2076 RNA polymerase III tra 99.7 2.6E-12 5.7E-17 124.9 39.5 505 2-515 156-783 (895)
34 KOG2076 RNA polymerase III tra 99.7 2E-13 4.4E-18 132.4 30.5 322 101-459 153-510 (895)
35 KOG1915 Cell cycle control pro 99.7 2.9E-12 6.3E-17 115.6 35.0 437 52-507 73-542 (677)
36 KOG0495 HAT repeat protein [RN 99.7 1.1E-11 2.5E-16 116.2 40.0 435 26-474 411-891 (913)
37 KOG0495 HAT repeat protein [RN 99.7 1.6E-12 3.5E-17 121.7 34.5 354 61-429 415-784 (913)
38 PRK10747 putative protoheme IX 99.6 4.2E-13 9E-18 128.3 30.0 277 166-460 97-389 (398)
39 KOG1915 Cell cycle control pro 99.6 1.1E-11 2.3E-16 112.0 36.3 440 2-460 90-584 (677)
40 KOG1155 Anaphase-promoting com 99.6 5.1E-12 1.1E-16 113.8 31.5 328 120-460 162-494 (559)
41 PRK10747 putative protoheme IX 99.6 2.5E-12 5.4E-17 123.0 31.4 277 135-427 97-390 (398)
42 KOG1126 DNA-binding cell divis 99.6 1.2E-13 2.7E-18 129.8 21.6 247 200-460 335-585 (638)
43 KOG1155 Anaphase-promoting com 99.6 9E-12 2E-16 112.3 31.2 285 96-388 236-534 (559)
44 KOG1126 DNA-binding cell divis 99.6 5.8E-13 1.2E-17 125.4 23.1 276 168-461 334-620 (638)
45 PF13429 TPR_15: Tetratricopep 99.6 1.6E-14 3.5E-19 132.0 12.3 253 93-353 14-276 (280)
46 KOG4318 Bicoid mRNA stability 99.6 3.8E-11 8.1E-16 116.5 34.8 427 6-465 11-598 (1088)
47 TIGR00540 hemY_coli hemY prote 99.6 9.3E-12 2E-16 119.8 30.5 284 166-460 97-398 (409)
48 TIGR00540 hemY_coli hemY prote 99.6 1.9E-11 4.1E-16 117.6 31.9 279 134-426 96-398 (409)
49 COG2956 Predicted N-acetylgluc 99.5 1E-10 2.2E-15 100.9 26.6 266 66-371 49-325 (389)
50 KOG1173 Anaphase-promoting com 99.5 1.7E-10 3.6E-15 106.9 30.0 268 183-460 243-517 (611)
51 COG3071 HemY Uncharacterized e 99.5 1.6E-10 3.6E-15 102.7 28.1 280 166-461 97-390 (400)
52 KOG0547 Translocase of outer m 99.5 7.3E-10 1.6E-14 100.9 31.2 388 25-429 119-568 (606)
53 TIGR02521 type_IV_pilW type IV 99.5 3.4E-11 7.4E-16 107.2 22.9 199 254-461 31-232 (234)
54 COG2956 Predicted N-acetylgluc 99.4 1.5E-10 3.2E-15 99.9 24.1 267 189-469 74-355 (389)
55 KOG1129 TPR repeat-containing 99.4 1E-11 2.3E-16 106.9 16.6 231 221-461 225-458 (478)
56 COG3071 HemY Uncharacterized e 99.4 1.1E-09 2.3E-14 97.6 29.6 276 135-426 97-389 (400)
57 KOG4318 Bicoid mRNA stability 99.4 2E-10 4.4E-15 111.6 24.7 269 73-373 11-283 (1088)
58 KOG1156 N-terminal acetyltrans 99.4 1.9E-08 4.1E-13 95.1 36.8 429 19-460 39-510 (700)
59 PRK12370 invasion protein regu 99.4 2.5E-10 5.4E-15 114.2 25.9 261 183-462 255-536 (553)
60 KOG1173 Anaphase-promoting com 99.4 2.6E-09 5.6E-14 99.2 29.1 415 15-442 44-533 (611)
61 KOG4162 Predicted calmodulin-b 99.4 5.1E-09 1.1E-13 100.8 31.8 412 15-462 318-784 (799)
62 KOG1174 Anaphase-promoting com 99.3 1.7E-08 3.6E-13 90.3 31.8 268 152-434 231-507 (564)
63 KOG1840 Kinesin light chain [C 99.3 1.5E-10 3.4E-15 110.3 20.7 240 220-459 200-477 (508)
64 PF13041 PPR_2: PPR repeat fam 99.3 1.8E-12 3.9E-17 83.0 5.2 50 50-99 1-50 (50)
65 KOG2047 mRNA splicing factor [ 99.3 3.5E-08 7.6E-13 93.2 35.0 292 197-499 360-720 (835)
66 KOG1129 TPR repeat-containing 99.3 1.2E-10 2.5E-15 100.6 17.1 231 188-431 227-462 (478)
67 KOG1156 N-terminal acetyltrans 99.3 2.8E-09 6.1E-14 100.5 27.4 254 56-313 12-282 (700)
68 TIGR02521 type_IV_pilW type IV 99.3 7.5E-10 1.6E-14 98.5 23.3 201 185-427 32-232 (234)
69 KOG3785 Uncharacterized conser 99.3 2.6E-08 5.6E-13 87.3 30.0 454 30-507 31-539 (557)
70 PF13041 PPR_2: PPR repeat fam 99.3 8.5E-12 1.8E-16 79.9 6.6 50 182-231 1-50 (50)
71 PRK12370 invasion protein regu 99.3 7.8E-10 1.7E-14 110.7 23.3 228 218-461 255-502 (553)
72 KOG0624 dsRNA-activated protei 99.3 8.7E-09 1.9E-13 89.8 25.0 305 127-462 43-371 (504)
73 PF12569 NARP1: NMDA receptor- 99.3 4.2E-08 9.1E-13 95.1 32.5 419 27-457 10-516 (517)
74 KOG2376 Signal recognition par 99.2 1.6E-07 3.6E-12 88.0 33.8 408 28-457 19-516 (652)
75 PRK11189 lipoprotein NlpI; Pro 99.2 7.7E-09 1.7E-13 94.8 25.0 232 198-442 40-281 (296)
76 KOG2376 Signal recognition par 99.2 4.4E-08 9.5E-13 91.7 29.2 435 59-510 19-496 (652)
77 KOG1840 Kinesin light chain [C 99.2 3.7E-09 8.1E-14 100.9 22.8 194 159-352 247-477 (508)
78 KOG2047 mRNA splicing factor [ 99.2 4.1E-07 8.9E-12 86.2 35.4 428 21-460 102-614 (835)
79 KOG1174 Anaphase-promoting com 99.2 2.1E-07 4.7E-12 83.4 31.7 282 164-461 207-500 (564)
80 PF12569 NARP1: NMDA receptor- 99.2 4.6E-08 1E-12 94.8 29.7 291 161-460 12-333 (517)
81 COG3063 PilF Tfp pilus assembl 99.2 3.2E-09 7E-14 87.6 18.4 167 287-463 37-204 (250)
82 PRK11189 lipoprotein NlpI; Pro 99.2 3.5E-09 7.6E-14 97.0 20.5 216 231-463 38-267 (296)
83 KOG4340 Uncharacterized conser 99.2 1.8E-07 3.9E-12 80.2 27.5 280 166-460 125-442 (459)
84 COG3063 PilF Tfp pilus assembl 99.1 3.3E-08 7.2E-13 81.7 21.5 202 221-433 37-242 (250)
85 KOG0548 Molecular co-chaperone 99.1 7.8E-08 1.7E-12 89.2 26.3 400 30-460 11-454 (539)
86 PF04733 Coatomer_E: Coatomer 99.1 5.5E-09 1.2E-13 94.2 16.9 252 161-432 9-270 (290)
87 PF04733 Coatomer_E: Coatomer 99.1 1.8E-08 3.8E-13 90.9 20.0 247 192-461 9-265 (290)
88 KOG4162 Predicted calmodulin-b 99.1 2.1E-07 4.5E-12 90.1 26.0 414 78-509 314-791 (799)
89 KOG3617 WD40 and TPR repeat-co 99.0 9.4E-07 2E-11 86.1 29.8 235 19-280 724-993 (1416)
90 KOG1127 TPR repeat-containing 99.0 7.8E-07 1.7E-11 88.4 26.6 443 4-458 475-993 (1238)
91 KOG3616 Selective LIM binding 99.0 2.6E-06 5.7E-11 82.0 29.1 262 162-461 741-1024(1636)
92 KOG3785 Uncharacterized conser 99.0 1.1E-06 2.4E-11 77.4 24.4 383 59-458 29-454 (557)
93 cd05804 StaR_like StaR_like; a 98.9 2E-06 4.4E-11 81.9 29.0 262 192-462 51-337 (355)
94 KOG1125 TPR repeat-containing 98.9 2.7E-08 6E-13 92.9 15.3 226 229-461 295-527 (579)
95 KOG1914 mRNA cleavage and poly 98.9 4.9E-05 1.1E-09 71.1 35.7 428 18-458 17-536 (656)
96 cd05804 StaR_like StaR_like; a 98.9 1.3E-06 2.8E-11 83.3 26.6 191 18-212 3-214 (355)
97 KOG3616 Selective LIM binding 98.9 2.5E-06 5.4E-11 82.2 27.1 220 193-457 741-962 (1636)
98 KOG0985 Vesicle coat protein c 98.9 5E-05 1.1E-09 76.1 36.4 261 154-452 1105-1374(1666)
99 KOG4340 Uncharacterized conser 98.9 7.5E-07 1.6E-11 76.5 20.9 284 159-456 16-334 (459)
100 PRK10370 formate-dependent nit 98.9 2.7E-07 5.9E-12 78.6 17.7 149 292-463 23-175 (198)
101 KOG1914 mRNA cleavage and poly 98.9 5.9E-05 1.3E-09 70.6 33.3 398 49-461 17-501 (656)
102 PRK04841 transcriptional regul 98.9 1.1E-05 2.3E-10 87.2 33.7 328 132-462 384-761 (903)
103 KOG0985 Vesicle coat protein c 98.8 1.6E-05 3.6E-10 79.4 30.9 396 3-445 856-1326(1666)
104 KOG1070 rRNA processing protei 98.8 5.1E-07 1.1E-11 92.7 20.9 203 252-467 1456-1669(1710)
105 KOG3617 WD40 and TPR repeat-co 98.8 3.1E-06 6.7E-11 82.6 24.7 321 98-458 739-1106(1416)
106 KOG0548 Molecular co-chaperone 98.8 1.8E-05 3.9E-10 74.0 28.6 409 6-445 21-473 (539)
107 TIGR03302 OM_YfiO outer membra 98.8 6.5E-07 1.4E-11 79.6 18.8 59 403-461 171-232 (235)
108 PRK04841 transcriptional regul 98.8 2.2E-05 4.7E-10 84.8 34.0 62 366-427 696-760 (903)
109 KOG1127 TPR repeat-containing 98.8 1.3E-06 2.9E-11 86.9 21.6 439 67-515 473-976 (1238)
110 PRK15359 type III secretion sy 98.8 3.7E-07 7.9E-12 73.6 14.0 110 328-442 27-136 (144)
111 PRK15359 type III secretion sy 98.7 3E-07 6.5E-12 74.1 13.2 109 346-462 14-122 (144)
112 KOG0624 dsRNA-activated protei 98.7 3.7E-05 8E-10 67.8 25.9 285 185-509 39-344 (504)
113 KOG1125 TPR repeat-containing 98.7 1.5E-06 3.2E-11 81.7 17.5 250 193-454 294-564 (579)
114 PLN02789 farnesyltranstransfer 98.7 9.4E-06 2E-10 74.4 22.6 133 302-445 125-268 (320)
115 KOG3081 Vesicle coat complex C 98.7 2.8E-05 6E-10 66.2 22.7 248 166-432 21-276 (299)
116 KOG1128 Uncharacterized conser 98.7 1.9E-06 4.1E-11 83.1 17.8 223 250-502 394-617 (777)
117 KOG1128 Uncharacterized conser 98.7 3.5E-05 7.7E-10 74.7 26.0 211 157-390 402-616 (777)
118 KOG1070 rRNA processing protei 98.6 8E-06 1.7E-10 84.3 22.5 204 110-315 1447-1664(1710)
119 KOG2053 Mitochondrial inherita 98.6 0.00066 1.4E-08 67.8 34.7 416 33-467 21-508 (932)
120 COG5010 TadD Flp pilus assembl 98.6 4.5E-06 9.8E-11 70.9 17.4 155 258-423 70-227 (257)
121 PRK10370 formate-dependent nit 98.6 6.4E-06 1.4E-10 70.2 17.8 156 261-435 23-181 (198)
122 TIGR03302 OM_YfiO outer membra 98.6 3.4E-06 7.3E-11 75.0 16.9 167 254-429 33-234 (235)
123 PRK15179 Vi polysaccharide bio 98.6 7.2E-06 1.6E-10 82.9 20.8 171 284-472 85-256 (694)
124 PRK14720 transcript cleavage f 98.6 2.6E-05 5.7E-10 79.8 24.4 53 396-450 221-273 (906)
125 PF12854 PPR_1: PPR repeat 98.6 1.1E-07 2.3E-12 54.5 4.3 32 356-387 2-33 (34)
126 PF12854 PPR_1: PPR repeat 98.6 9E-08 2E-12 54.8 3.9 32 117-148 2-33 (34)
127 COG5010 TadD Flp pilus assembl 98.5 8E-06 1.7E-10 69.5 16.5 161 284-456 66-226 (257)
128 PRK15179 Vi polysaccharide bio 98.5 2.9E-05 6.3E-10 78.6 23.5 144 250-405 82-229 (694)
129 PLN02789 farnesyltranstransfer 98.5 9.7E-05 2.1E-09 67.8 24.9 211 186-410 39-267 (320)
130 KOG3081 Vesicle coat complex C 98.5 5.2E-05 1.1E-09 64.6 20.9 244 193-460 17-270 (299)
131 COG4783 Putative Zn-dependent 98.5 0.0001 2.2E-09 68.5 23.6 118 335-458 316-434 (484)
132 PF09295 ChAPs: ChAPs (Chs5p-A 98.5 2.9E-06 6.3E-11 79.2 14.0 126 325-458 169-294 (395)
133 TIGR02552 LcrH_SycD type III s 98.5 2.5E-06 5.4E-11 68.4 11.5 99 360-461 16-114 (135)
134 PRK14720 transcript cleavage f 98.5 6.8E-05 1.5E-09 76.9 23.8 235 122-409 31-268 (906)
135 TIGR02552 LcrH_SycD type III s 98.4 1.2E-05 2.5E-10 64.5 13.4 115 307-433 5-120 (135)
136 KOG3060 Uncharacterized conser 98.4 8.7E-05 1.9E-09 62.8 18.3 189 231-431 24-224 (289)
137 PRK15363 pathogenicity island 98.4 5.2E-06 1.1E-10 65.7 10.4 99 360-462 34-133 (157)
138 COG4783 Putative Zn-dependent 98.3 0.00013 2.7E-09 67.9 20.2 150 288-467 309-460 (484)
139 KOG3060 Uncharacterized conser 98.3 0.00022 4.7E-09 60.5 19.8 184 197-389 25-219 (289)
140 PF09976 TPR_21: Tetratricopep 98.3 2.3E-05 5E-10 63.4 13.8 126 328-457 15-143 (145)
141 PF07079 DUF1347: Protein of u 98.3 0.0028 6E-08 58.6 29.9 401 30-458 15-521 (549)
142 TIGR00756 PPR pentatricopeptid 98.3 1.7E-06 3.7E-11 50.4 4.3 35 53-87 1-35 (35)
143 PF09295 ChAPs: ChAPs (Chs5p-A 98.2 2.3E-05 4.9E-10 73.4 13.0 120 57-181 174-296 (395)
144 TIGR02795 tol_pal_ybgF tol-pal 98.2 2.7E-05 5.7E-10 60.8 11.4 99 363-461 4-105 (119)
145 PF13812 PPR_3: Pentatricopept 98.2 2.9E-06 6.2E-11 49.0 4.0 33 53-85 2-34 (34)
146 TIGR02795 tol_pal_ybgF tol-pal 98.2 4.4E-05 9.5E-10 59.5 11.8 112 326-437 3-115 (119)
147 cd00189 TPR Tetratricopeptide 98.1 2.9E-05 6.3E-10 57.5 10.0 95 364-461 3-97 (100)
148 PF09976 TPR_21: Tetratricopep 98.1 0.00026 5.6E-09 57.3 15.9 125 287-424 14-144 (145)
149 PF13812 PPR_3: Pentatricopept 98.1 5.9E-06 1.3E-10 47.7 4.2 33 185-217 2-34 (34)
150 TIGR00756 PPR pentatricopeptid 98.1 5.3E-06 1.1E-10 48.3 4.1 33 186-218 2-34 (35)
151 PF12895 Apc3: Anaphase-promot 98.0 5.6E-06 1.2E-10 59.8 4.2 82 374-457 2-83 (84)
152 PF13414 TPR_11: TPR repeat; P 98.0 2.2E-05 4.7E-10 54.2 6.8 65 397-461 2-67 (69)
153 PF14938 SNAP: Soluble NSF att 98.0 0.00092 2E-08 60.9 19.1 195 187-408 38-245 (282)
154 KOG0553 TPR repeat-containing 98.0 0.00017 3.8E-09 62.8 13.0 109 335-449 91-200 (304)
155 PRK02603 photosystem I assembl 98.0 0.00013 2.9E-09 61.0 11.8 92 361-452 35-126 (172)
156 PF13432 TPR_16: Tetratricopep 98.0 3.7E-05 7.9E-10 52.3 6.6 58 404-461 3-60 (65)
157 PLN03088 SGT1, suppressor of 97.9 9.9E-05 2.1E-09 69.5 11.6 109 331-444 8-116 (356)
158 COG4235 Cytochrome c biogenesi 97.9 0.00032 6.9E-09 61.6 13.6 108 357-467 152-262 (287)
159 PLN03088 SGT1, suppressor of 97.9 0.00022 4.8E-09 67.1 13.6 103 290-405 7-110 (356)
160 CHL00033 ycf3 photosystem I as 97.9 0.00015 3.2E-09 60.5 11.2 98 360-457 34-138 (168)
161 PF14938 SNAP: Soluble NSF att 97.9 0.00014 3E-09 66.3 11.8 132 327-458 116-263 (282)
162 PF05843 Suf: Suppressor of fo 97.9 0.00054 1.2E-08 62.2 15.3 136 286-432 2-141 (280)
163 KOG0553 TPR repeat-containing 97.9 0.0001 2.2E-09 64.2 9.5 112 368-503 88-200 (304)
164 PF01535 PPR: PPR repeat; Int 97.8 2.1E-05 4.6E-10 44.2 3.4 31 53-83 1-31 (31)
165 cd00189 TPR Tetratricopeptide 97.8 0.00022 4.7E-09 52.7 9.9 97 328-429 3-99 (100)
166 COG4700 Uncharacterized protei 97.8 0.0046 1E-07 50.0 17.2 137 321-461 85-222 (251)
167 PF13432 TPR_16: Tetratricopep 97.8 8.4E-05 1.8E-09 50.5 6.6 63 367-432 3-65 (65)
168 KOG0550 Molecular chaperone (D 97.8 0.0018 3.9E-08 59.1 16.2 159 293-462 177-351 (486)
169 PRK10153 DNA-binding transcrip 97.8 0.0016 3.4E-08 64.3 17.5 139 283-432 335-487 (517)
170 COG5107 RNA14 Pre-mRNA 3'-end 97.8 0.034 7.3E-07 51.7 32.5 406 6-431 30-535 (660)
171 PRK02603 photosystem I assembl 97.8 0.00092 2E-08 55.9 13.4 129 286-447 36-166 (172)
172 PF08579 RPM2: Mitochondrial r 97.7 0.00028 6.1E-09 51.9 8.1 80 55-134 28-116 (120)
173 PF01535 PPR: PPR repeat; Int 97.7 4.4E-05 9.6E-10 42.8 3.3 29 186-214 2-30 (31)
174 PF12688 TPR_5: Tetratrico pep 97.7 0.00068 1.5E-08 51.9 10.6 90 367-458 7-101 (120)
175 PF05843 Suf: Suppressor of fo 97.7 0.00071 1.5E-08 61.4 12.0 131 326-461 2-136 (280)
176 PF08579 RPM2: Mitochondrial r 97.7 0.00083 1.8E-08 49.5 9.8 80 187-266 28-116 (120)
177 PF14559 TPR_19: Tetratricopep 97.7 8.5E-05 1.8E-09 51.1 4.7 53 409-461 2-54 (68)
178 COG3898 Uncharacterized membra 97.7 0.045 9.8E-07 49.9 24.7 253 195-469 131-398 (531)
179 KOG2280 Vacuolar assembly/sort 97.7 0.078 1.7E-06 52.6 28.8 355 61-456 398-794 (829)
180 KOG1130 Predicted G-alpha GTPa 97.6 0.00023 5E-09 64.5 7.8 135 326-460 196-343 (639)
181 PF13371 TPR_9: Tetratricopept 97.6 0.00027 5.8E-09 49.4 6.7 57 406-462 3-59 (73)
182 COG4700 Uncharacterized protei 97.6 0.013 2.9E-07 47.5 16.3 128 215-349 85-217 (251)
183 PF12895 Apc3: Anaphase-promot 97.6 0.00031 6.6E-09 50.6 6.8 77 298-385 2-82 (84)
184 PF06239 ECSIT: Evolutionarily 97.6 0.00038 8.2E-09 58.0 7.9 99 39-137 32-153 (228)
185 PRK10866 outer membrane biogen 97.6 0.019 4.1E-07 50.8 19.3 79 51-131 31-113 (243)
186 COG5107 RNA14 Pre-mRNA 3'-end 97.6 0.069 1.5E-06 49.7 26.4 406 41-460 29-530 (660)
187 KOG2041 WD40 repeat protein [G 97.5 0.1 2.3E-06 51.3 28.3 245 37-313 679-951 (1189)
188 PF10037 MRP-S27: Mitochondria 97.5 0.0011 2.3E-08 62.7 11.3 96 54-149 68-165 (429)
189 KOG2053 Mitochondrial inherita 97.5 0.14 3.1E-06 51.9 39.9 182 30-214 52-256 (932)
190 PF13414 TPR_11: TPR repeat; P 97.5 0.00027 5.8E-09 48.7 5.5 67 360-429 2-69 (69)
191 PF14559 TPR_19: Tetratricopep 97.5 0.00015 3.3E-09 49.8 4.1 51 337-389 3-53 (68)
192 KOG0550 Molecular chaperone (D 97.5 0.037 8.1E-07 50.8 19.6 268 98-388 60-348 (486)
193 PRK15363 pathogenicity island 97.5 0.0026 5.7E-08 50.7 11.1 92 186-279 37-128 (157)
194 PRK10153 DNA-binding transcrip 97.4 0.0069 1.5E-07 59.8 16.3 137 321-462 333-483 (517)
195 CHL00033 ycf3 photosystem I as 97.4 0.0047 1E-07 51.4 13.2 99 329-430 39-152 (168)
196 PRK10866 outer membrane biogen 97.4 0.028 6E-07 49.8 18.5 57 403-459 180-239 (243)
197 PRK15331 chaperone protein Sic 97.4 0.004 8.6E-08 49.9 11.7 92 366-460 42-133 (165)
198 PF13431 TPR_17: Tetratricopep 97.4 0.00014 3E-09 41.5 2.5 32 421-452 2-33 (34)
199 PRK10803 tol-pal system protei 97.4 0.0026 5.7E-08 56.6 11.5 89 372-460 154-245 (263)
200 KOG2796 Uncharacterized conser 97.4 0.013 2.7E-07 50.4 14.6 130 185-314 178-315 (366)
201 PF06239 ECSIT: Evolutionarily 97.4 0.0022 4.8E-08 53.6 10.0 97 173-269 34-153 (228)
202 KOG1538 Uncharacterized conser 97.4 0.018 3.9E-07 55.8 17.2 88 325-426 747-845 (1081)
203 KOG1130 Predicted G-alpha GTPa 97.3 0.00091 2E-08 60.8 8.1 271 60-353 25-343 (639)
204 KOG1258 mRNA processing protei 97.3 0.18 3.8E-06 49.1 29.1 188 253-448 296-491 (577)
205 PF12688 TPR_5: Tetratrico pep 97.3 0.0083 1.8E-07 46.0 12.0 106 190-295 7-116 (120)
206 COG3898 Uncharacterized membra 97.3 0.13 2.8E-06 47.1 25.3 276 100-389 97-391 (531)
207 PRK10803 tol-pal system protei 97.3 0.0075 1.6E-07 53.8 13.5 107 326-432 144-251 (263)
208 PF13281 DUF4071: Domain of un 97.3 0.048 1.1E-06 50.7 19.0 166 258-431 145-338 (374)
209 KOG2796 Uncharacterized conser 97.3 0.013 2.8E-07 50.3 13.8 121 93-213 183-315 (366)
210 PF10037 MRP-S27: Mitochondria 97.3 0.0039 8.5E-08 59.0 12.0 114 253-372 65-184 (429)
211 PF03704 BTAD: Bacterial trans 97.2 0.016 3.5E-07 46.9 13.3 69 400-468 64-137 (146)
212 PF04840 Vps16_C: Vps16, C-ter 97.1 0.21 4.4E-06 46.1 31.3 106 261-388 184-289 (319)
213 PF13525 YfiO: Outer membrane 97.1 0.031 6.8E-07 48.1 15.4 161 263-452 14-198 (203)
214 PF13371 TPR_9: Tetratricopept 97.1 0.002 4.3E-08 44.8 6.5 66 368-436 2-67 (73)
215 PF12921 ATP13: Mitochondrial 97.1 0.012 2.5E-07 45.7 11.1 87 286-372 3-99 (126)
216 PLN03098 LPA1 LOW PSII ACCUMUL 97.0 0.0035 7.5E-08 58.8 8.9 63 398-460 75-140 (453)
217 PF13428 TPR_14: Tetratricopep 97.0 0.0015 3.2E-08 40.0 4.6 41 400-440 3-43 (44)
218 PF13512 TPR_18: Tetratricopep 97.0 0.017 3.7E-07 45.3 11.2 121 367-510 16-137 (142)
219 KOG2041 WD40 repeat protein [G 96.9 0.55 1.2E-05 46.5 24.6 173 19-207 690-875 (1189)
220 PF04840 Vps16_C: Vps16, C-ter 96.9 0.38 8.2E-06 44.4 25.3 111 326-458 178-288 (319)
221 PF13525 YfiO: Outer membrane 96.8 0.3 6.5E-06 42.0 18.1 60 189-248 10-71 (203)
222 KOG0543 FKBP-type peptidyl-pro 96.7 0.019 4.1E-07 52.8 10.8 98 361-461 257-355 (397)
223 PF13424 TPR_12: Tetratricopep 96.7 0.0039 8.5E-08 44.0 5.4 62 399-460 6-74 (78)
224 COG4235 Cytochrome c biogenesi 96.7 0.072 1.6E-06 47.2 13.9 105 322-431 153-260 (287)
225 KOG1538 Uncharacterized conser 96.7 0.15 3.2E-06 49.8 16.7 230 90-388 601-844 (1081)
226 PF03704 BTAD: Bacterial trans 96.6 0.044 9.6E-07 44.3 11.6 74 286-365 63-140 (146)
227 PF13281 DUF4071: Domain of un 96.6 0.26 5.6E-06 46.0 17.4 90 158-247 146-254 (374)
228 PF04184 ST7: ST7 protein; In 96.5 0.059 1.3E-06 51.1 12.5 207 290-518 173-393 (539)
229 KOG1585 Protein required for f 96.5 0.14 3E-06 43.8 13.3 206 221-456 33-251 (308)
230 PF09205 DUF1955: Domain of un 96.4 0.3 6.6E-06 37.4 16.6 141 295-464 12-152 (161)
231 KOG4555 TPR repeat-containing 96.4 0.033 7.1E-07 42.3 8.1 90 370-462 52-145 (175)
232 PF13424 TPR_12: Tetratricopep 96.3 0.0086 1.9E-07 42.3 5.0 67 287-353 7-74 (78)
233 KOG2114 Vacuolar assembly/sort 96.3 1.5 3.3E-05 44.6 27.4 173 26-210 339-516 (933)
234 KOG2280 Vacuolar assembly/sort 96.3 1.5 3.2E-05 44.2 27.7 376 5-422 368-794 (829)
235 KOG3941 Intermediate in Toll s 96.2 0.028 6.2E-07 48.8 8.0 109 40-148 53-185 (406)
236 KOG2610 Uncharacterized conser 96.2 0.093 2E-06 46.9 11.2 162 295-468 113-283 (491)
237 PF10300 DUF3808: Protein of u 96.1 0.61 1.3E-05 45.9 17.9 163 291-460 194-375 (468)
238 COG1729 Uncharacterized protei 96.1 0.058 1.3E-06 47.1 9.4 58 404-461 184-244 (262)
239 PRK11906 transcriptional regul 96.0 0.17 3.7E-06 48.0 13.1 81 377-460 320-400 (458)
240 PF13512 TPR_18: Tetratricopep 95.9 0.32 6.9E-06 38.3 12.0 55 335-389 20-75 (142)
241 COG3118 Thioredoxin domain-con 95.8 0.79 1.7E-05 40.7 15.2 124 334-462 143-266 (304)
242 COG1729 Uncharacterized protei 95.8 0.15 3.3E-06 44.7 10.8 109 326-435 143-252 (262)
243 KOG2610 Uncharacterized conser 95.8 0.43 9.3E-06 42.9 13.5 182 266-458 115-312 (491)
244 PLN03098 LPA1 LOW PSII ACCUMUL 95.8 0.11 2.3E-06 49.2 10.4 61 325-388 75-139 (453)
245 KOG1585 Protein required for f 95.7 1.2 2.5E-05 38.5 16.6 214 186-422 33-251 (308)
246 PF12921 ATP13: Mitochondrial 95.7 0.15 3.2E-06 39.6 9.5 78 185-262 3-96 (126)
247 KOG1941 Acetylcholine receptor 95.7 0.66 1.4E-05 42.3 14.4 45 195-239 17-63 (518)
248 PF04053 Coatomer_WDAD: Coatom 95.6 0.48 1E-05 45.9 14.6 155 60-242 269-425 (443)
249 COG4105 ComL DNA uptake lipopr 95.6 1.4 3.1E-05 38.4 16.7 55 404-458 173-230 (254)
250 COG0457 NrfG FOG: TPR repeat [ 95.6 1.4 3.1E-05 38.3 27.2 122 334-459 139-263 (291)
251 KOG0890 Protein kinase of the 95.5 4.7 0.0001 46.4 22.8 316 127-465 1388-1735(2382)
252 PRK11906 transcriptional regul 95.4 1.1 2.3E-05 42.8 15.6 160 286-456 252-431 (458)
253 PF04053 Coatomer_WDAD: Coatom 95.4 0.91 2E-05 44.1 15.6 159 97-281 271-429 (443)
254 KOG3941 Intermediate in Toll s 95.3 0.18 4E-06 44.0 9.5 110 172-281 53-186 (406)
255 PRK15331 chaperone protein Sic 95.3 0.57 1.2E-05 37.9 11.7 89 293-389 45-133 (165)
256 KOG0543 FKBP-type peptidyl-pro 95.3 0.21 4.6E-06 46.2 10.3 94 287-388 259-353 (397)
257 PF07035 Mic1: Colon cancer-as 95.3 0.9 1.9E-05 37.1 12.9 131 73-211 15-147 (167)
258 KOG4234 TPR repeat-containing 95.2 0.11 2.4E-06 42.9 7.6 88 371-461 105-197 (271)
259 PF04184 ST7: ST7 protein; In 95.1 1.6 3.5E-05 41.8 15.7 106 325-432 259-380 (539)
260 PRK09687 putative lyase; Provi 95.0 2.6 5.7E-05 38.2 25.3 136 283-441 140-276 (280)
261 PF02259 FAT: FAT domain; Int 95.0 3.2 7E-05 39.3 21.9 153 284-445 145-305 (352)
262 smart00299 CLH Clathrin heavy 95.0 1.5 3.2E-05 35.0 15.7 42 92-134 12-53 (140)
263 COG0457 NrfG FOG: TPR repeat [ 95.0 2.2 4.9E-05 37.1 25.7 222 198-430 37-268 (291)
264 PF07719 TPR_2: Tetratricopept 95.0 0.084 1.8E-06 29.8 4.7 31 400-430 3-33 (34)
265 smart00299 CLH Clathrin heavy 94.9 1.5 3.3E-05 35.0 15.1 128 53-195 8-136 (140)
266 PF00515 TPR_1: Tetratricopept 94.9 0.067 1.5E-06 30.3 4.1 31 400-430 3-33 (34)
267 COG3118 Thioredoxin domain-con 94.8 2.8 6.1E-05 37.4 17.3 167 273-451 122-291 (304)
268 KOG4555 TPR repeat-containing 94.7 0.47 1E-05 36.3 9.1 94 334-429 52-146 (175)
269 PF09205 DUF1955: Domain of un 94.6 1.6 3.6E-05 33.6 12.1 61 288-354 89-149 (161)
270 KOG2114 Vacuolar assembly/sort 94.5 6.7 0.00015 40.3 24.2 142 29-181 376-518 (933)
271 PF10300 DUF3808: Protein of u 94.4 0.74 1.6E-05 45.3 12.6 132 327-462 190-335 (468)
272 KOG1941 Acetylcholine receptor 94.4 4.1 8.9E-05 37.4 16.1 168 185-352 84-273 (518)
273 PF07079 DUF1347: Protein of u 94.3 4.9 0.00011 38.2 34.3 377 23-424 48-521 (549)
274 PRK09687 putative lyase; Provi 94.3 4.1 8.9E-05 37.0 24.4 233 47-295 32-277 (280)
275 KOG1258 mRNA processing protei 94.2 6.3 0.00014 38.8 27.3 354 40-419 31-421 (577)
276 PF13176 TPR_7: Tetratricopept 94.2 0.11 2.4E-06 30.0 3.9 26 434-459 1-26 (36)
277 COG3629 DnrI DNA-binding trans 94.1 0.36 7.8E-06 43.1 8.6 61 400-460 155-215 (280)
278 PF00637 Clathrin: Region in C 94.1 0.11 2.4E-06 41.7 5.2 84 93-179 13-96 (143)
279 COG4105 ComL DNA uptake lipopr 94.0 4 8.6E-05 35.8 20.7 67 366-432 172-238 (254)
280 PF10602 RPN7: 26S proteasome 94.0 2.8 6E-05 35.0 13.4 97 286-389 37-141 (177)
281 PF10602 RPN7: 26S proteasome 93.6 1.2 2.6E-05 37.2 10.6 98 361-458 36-139 (177)
282 COG1747 Uncharacterized N-term 93.6 7.5 0.00016 37.6 22.3 92 218-313 65-159 (711)
283 PF02259 FAT: FAT domain; Int 93.5 6.4 0.00014 37.2 17.0 67 395-461 143-213 (352)
284 COG4785 NlpI Lipoprotein NlpI, 93.5 0.42 9E-06 40.2 7.3 91 410-506 77-167 (297)
285 PF10345 Cohesin_load: Cohesin 93.5 11 0.00023 39.0 26.1 125 24-149 103-252 (608)
286 COG4649 Uncharacterized protei 93.5 3.6 7.7E-05 33.5 12.3 116 267-388 71-194 (221)
287 KOG0890 Protein kinase of the 93.4 19 0.00042 41.9 22.1 62 254-315 1670-1732(2382)
288 COG1747 Uncharacterized N-term 93.4 8 0.00017 37.4 20.5 90 186-280 68-157 (711)
289 COG2976 Uncharacterized protei 93.2 3.5 7.7E-05 34.3 12.1 91 334-429 98-190 (207)
290 PF13428 TPR_14: Tetratricopep 93.1 0.21 4.5E-06 30.4 4.0 31 432-462 1-31 (44)
291 PRK15180 Vi polysaccharide bio 93.0 2.2 4.7E-05 40.6 12.0 144 335-485 299-442 (831)
292 PF08631 SPO22: Meiosis protei 92.9 7.1 0.00015 35.5 23.1 118 196-314 5-150 (278)
293 KOG1464 COP9 signalosome, subu 92.9 6.1 0.00013 34.7 17.8 237 186-433 67-338 (440)
294 KOG2396 HAT (Half-A-TPR) repea 92.7 9.9 0.00022 36.7 24.2 92 365-459 464-557 (568)
295 PRK11619 lytic murein transgly 92.6 14 0.00031 38.1 32.6 118 298-425 254-373 (644)
296 PF08631 SPO22: Meiosis protei 92.3 8.7 0.00019 35.0 22.7 93 221-315 86-187 (278)
297 PF13181 TPR_8: Tetratricopept 92.0 0.35 7.6E-06 27.2 3.8 29 401-429 4-32 (34)
298 COG3629 DnrI DNA-binding trans 91.9 1.1 2.5E-05 40.0 8.5 81 254-334 153-236 (280)
299 KOG4234 TPR repeat-containing 91.9 4.2 9E-05 34.0 10.9 102 334-441 104-211 (271)
300 PF13176 TPR_7: Tetratricopept 91.7 0.43 9.3E-06 27.4 4.0 24 187-210 2-25 (36)
301 TIGR02508 type_III_yscG type I 91.7 3.9 8.5E-05 29.8 9.4 60 161-223 47-106 (115)
302 PF13170 DUF4003: Protein of u 91.6 8.4 0.00018 35.3 14.0 64 302-371 160-227 (297)
303 COG2909 MalT ATP-dependent tra 91.3 21 0.00046 37.3 26.7 221 229-457 425-684 (894)
304 KOG4648 Uncharacterized conser 90.8 0.69 1.5E-05 41.8 6.0 114 331-453 103-216 (536)
305 PF07035 Mic1: Colon cancer-as 90.7 8.2 0.00018 31.6 14.3 133 204-353 14-148 (167)
306 PF02284 COX5A: Cytochrome c o 90.7 1.9 4.1E-05 31.5 7.0 62 302-370 27-88 (108)
307 cd00923 Cyt_c_Oxidase_Va Cytoc 90.6 2.4 5.1E-05 30.7 7.3 63 300-369 22-84 (103)
308 PF11207 DUF2989: Protein of u 90.5 8.4 0.00018 32.5 11.7 78 371-452 117-198 (203)
309 PF07719 TPR_2: Tetratricopept 90.5 0.65 1.4E-05 26.0 3.9 29 433-461 2-30 (34)
310 KOG4648 Uncharacterized conser 90.3 1.2 2.6E-05 40.3 7.0 94 292-398 104-198 (536)
311 PF09613 HrpB1_HrpK: Bacterial 90.2 8.6 0.00019 31.1 12.8 117 326-451 8-128 (160)
312 PF07721 TPR_4: Tetratricopept 90.2 0.45 9.8E-06 24.9 2.8 24 433-456 2-25 (26)
313 PF09613 HrpB1_HrpK: Bacterial 90.1 2.2 4.8E-05 34.4 7.8 84 362-449 8-95 (160)
314 PF00515 TPR_1: Tetratricopept 90.0 0.97 2.1E-05 25.3 4.4 27 287-313 3-29 (34)
315 KOG2066 Vacuolar assembly/sort 89.6 27 0.00059 35.9 26.4 170 94-285 363-536 (846)
316 KOG4570 Uncharacterized conser 89.5 1 2.2E-05 40.2 6.0 48 67-114 115-162 (418)
317 PF13374 TPR_10: Tetratricopep 89.3 1 2.2E-05 26.6 4.4 24 435-458 5-28 (42)
318 TIGR02561 HrpB1_HrpK type III 89.2 2.4 5.2E-05 33.6 7.2 51 411-461 23-73 (153)
319 KOG1586 Protein required for f 89.2 14 0.0003 32.0 12.7 26 405-430 161-186 (288)
320 KOG0276 Vesicle coat complex C 89.0 7.9 0.00017 38.2 11.8 151 164-351 597-747 (794)
321 PF13374 TPR_10: Tetratricopep 89.0 0.88 1.9E-05 26.9 3.9 28 398-425 2-29 (42)
322 PF13431 TPR_17: Tetratricopep 89.0 0.68 1.5E-05 26.2 3.1 31 111-142 3-33 (34)
323 COG4785 NlpI Lipoprotein NlpI, 89.0 7.6 0.00017 33.0 10.2 28 433-460 238-265 (297)
324 COG3947 Response regulator con 88.9 17 0.00037 32.6 15.5 60 401-460 282-341 (361)
325 COG2976 Uncharacterized protei 88.6 13 0.00029 31.1 14.4 85 294-389 98-187 (207)
326 KOG0276 Vesicle coat complex C 88.5 11 0.00023 37.4 12.3 150 266-458 598-747 (794)
327 PF04097 Nic96: Nup93/Nic96; 88.4 33 0.00072 35.4 20.8 18 371-388 515-532 (613)
328 KOG1586 Protein required for f 88.0 17 0.00037 31.5 14.9 101 339-441 128-240 (288)
329 PF14853 Fis1_TPR_C: Fis1 C-te 87.9 1.7 3.8E-05 27.6 4.7 33 403-435 6-38 (53)
330 KOG2066 Vacuolar assembly/sort 87.9 35 0.00077 35.1 24.6 67 329-412 638-704 (846)
331 cd00923 Cyt_c_Oxidase_Va Cytoc 87.7 3.7 8E-05 29.7 6.6 59 379-439 25-83 (103)
332 KOG1920 IkappaB kinase complex 87.3 48 0.001 36.0 22.2 56 331-388 971-1026(1265)
333 PF13174 TPR_6: Tetratricopept 87.2 0.96 2.1E-05 25.0 3.1 28 434-461 2-29 (33)
334 KOG2396 HAT (Half-A-TPR) repea 87.1 31 0.00067 33.6 31.1 57 404-460 466-524 (568)
335 PF00637 Clathrin: Region in C 87.1 0.69 1.5E-05 37.1 3.4 53 191-243 14-66 (143)
336 PF13181 TPR_8: Tetratricopept 87.0 1.6 3.6E-05 24.3 4.0 29 433-461 2-30 (34)
337 PF13174 TPR_6: Tetratricopept 86.8 1.5 3.3E-05 24.1 3.8 29 402-430 4-32 (33)
338 KOG4570 Uncharacterized conser 86.8 9 0.00019 34.6 9.9 97 249-354 59-164 (418)
339 COG4455 ImpE Protein of avirul 86.1 5.1 0.00011 34.1 7.7 54 290-350 6-60 (273)
340 PF02284 COX5A: Cytochrome c o 86.1 5.4 0.00012 29.2 6.8 59 379-439 28-86 (108)
341 PRK15180 Vi polysaccharide bio 85.7 5.2 0.00011 38.2 8.4 124 295-430 299-423 (831)
342 PRK10941 hypothetical protein; 85.3 6.1 0.00013 35.5 8.5 62 400-461 183-244 (269)
343 PF13762 MNE1: Mitochondrial s 85.2 14 0.00031 29.4 9.5 77 23-99 41-127 (145)
344 KOG2422 Uncharacterized conser 85.0 4.4 9.4E-05 39.7 7.8 163 337-503 250-450 (665)
345 TIGR02508 type_III_yscG type I 84.8 13 0.00029 27.2 8.8 87 235-330 21-107 (115)
346 PF07163 Pex26: Pex26 protein; 84.5 26 0.00056 31.3 11.5 86 368-455 90-181 (309)
347 KOG1308 Hsp70-interacting prot 83.5 0.94 2E-05 41.1 2.6 87 374-463 127-213 (377)
348 PF04097 Nic96: Nup93/Nic96; 83.1 61 0.0013 33.5 21.8 163 286-458 325-531 (613)
349 PF14561 TPR_20: Tetratricopep 83.1 5.5 0.00012 28.8 6.0 43 419-461 9-51 (90)
350 KOG0530 Protein farnesyltransf 83.0 33 0.00071 30.4 13.9 128 377-510 94-225 (318)
351 KOG3364 Membrane protein invol 82.6 21 0.00046 27.9 9.3 73 358-433 29-106 (149)
352 PF11207 DUF2989: Protein of u 82.3 9 0.00019 32.3 7.7 75 342-418 123-198 (203)
353 smart00028 TPR Tetratricopepti 81.9 3.6 7.9E-05 21.8 4.0 25 405-429 8-32 (34)
354 cd08819 CARD_MDA5_2 Caspase ac 81.9 8 0.00017 27.5 6.1 64 5-71 22-85 (88)
355 COG4649 Uncharacterized protei 81.7 28 0.00061 28.6 16.6 132 287-426 61-195 (221)
356 KOG4642 Chaperone-dependent E3 80.9 7.4 0.00016 33.7 6.8 52 407-458 53-104 (284)
357 PRK13800 putative oxidoreducta 80.7 93 0.002 34.0 28.3 92 253-353 788-880 (897)
358 KOG1464 COP9 signalosome, subu 80.5 41 0.00089 29.8 17.6 201 49-275 23-252 (440)
359 KOG2063 Vacuolar assembly/sort 79.1 76 0.0016 33.9 14.6 28 186-213 506-533 (877)
360 TIGR03504 FimV_Cterm FimV C-te 78.7 4.4 9.6E-05 24.6 3.6 26 436-461 3-28 (44)
361 KOG2063 Vacuolar assembly/sort 78.5 1E+02 0.0022 33.1 18.4 64 53-116 505-573 (877)
362 PF06552 TOM20_plant: Plant sp 77.6 5.8 0.00013 32.7 5.1 33 414-446 51-83 (186)
363 PRK13800 putative oxidoreducta 77.4 1.2E+02 0.0025 33.3 28.9 20 149-168 631-650 (897)
364 KOG1920 IkappaB kinase complex 77.2 1.2E+02 0.0026 33.3 23.3 116 322-459 932-1053(1265)
365 cd08326 CARD_CASP9 Caspase act 77.2 8.5 0.00018 27.4 5.3 63 4-71 18-80 (84)
366 KOG4507 Uncharacterized conser 77.1 6.7 0.00015 38.6 6.1 99 338-442 620-720 (886)
367 KOG1550 Extracellular protein 77.1 90 0.0019 31.8 18.4 174 200-388 228-424 (552)
368 PRK12798 chemotaxis protein; R 76.7 72 0.0016 30.5 22.0 180 267-459 125-322 (421)
369 PF13929 mRNA_stabil: mRNA sta 76.7 58 0.0013 29.4 13.9 66 321-386 198-263 (292)
370 PF04910 Tcf25: Transcriptiona 76.4 72 0.0016 30.3 15.1 122 323-460 38-167 (360)
371 smart00028 TPR Tetratricopepti 76.0 5.5 0.00012 20.9 3.6 29 433-461 2-30 (34)
372 KOG0376 Serine-threonine phosp 75.9 4.6 9.9E-05 38.7 4.6 88 368-459 11-99 (476)
373 PRK13342 recombination factor 75.8 81 0.0018 30.7 13.5 114 104-232 154-278 (413)
374 PF10579 Rapsyn_N: Rapsyn N-te 75.8 8.1 0.00018 26.8 4.6 19 401-419 46-64 (80)
375 PF07163 Pex26: Pex26 protein; 75.4 33 0.00072 30.7 9.3 87 191-277 90-181 (309)
376 cd08819 CARD_MDA5_2 Caspase ac 75.4 24 0.00053 25.1 6.9 64 107-172 22-85 (88)
377 KOG4077 Cytochrome c oxidase, 75.3 23 0.0005 27.2 7.2 60 303-369 67-126 (149)
378 PRK11619 lytic murein transgly 75.2 1.1E+02 0.0024 31.9 38.0 247 197-466 254-510 (644)
379 COG5159 RPN6 26S proteasome re 74.4 53 0.0011 29.5 10.2 122 190-311 9-151 (421)
380 PF06552 TOM20_plant: Plant sp 73.9 13 0.00028 30.7 6.1 78 378-466 52-141 (186)
381 smart00386 HAT HAT (Half-A-TPR 73.8 7.7 0.00017 21.0 3.7 30 412-441 1-30 (33)
382 KOG4507 Uncharacterized conser 73.5 26 0.00057 34.7 8.9 135 321-462 567-706 (886)
383 KOG4279 Serine/threonine prote 72.6 66 0.0014 33.2 11.6 61 185-248 202-272 (1226)
384 TIGR02561 HrpB1_HrpK type III 72.6 48 0.001 26.6 11.9 26 186-211 95-120 (153)
385 PF13170 DUF4003: Protein of u 72.5 79 0.0017 29.1 19.8 149 301-458 78-243 (297)
386 KOG1498 26S proteasome regulat 71.8 91 0.002 29.5 14.6 222 267-495 25-275 (439)
387 TIGR03504 FimV_Cterm FimV C-te 71.6 11 0.00023 22.9 4.0 24 190-213 5-28 (44)
388 PF09477 Type_III_YscG: Bacter 71.3 40 0.00087 25.1 8.9 79 234-315 21-99 (116)
389 KOG4642 Chaperone-dependent E3 70.7 57 0.0012 28.5 9.3 118 264-388 20-144 (284)
390 PF13762 MNE1: Mitochondrial s 70.5 33 0.00072 27.3 7.6 50 183-232 78-128 (145)
391 PF10579 Rapsyn_N: Rapsyn N-te 70.5 14 0.0003 25.8 4.7 45 410-454 18-65 (80)
392 KOG1550 Extracellular protein 70.0 1.3E+02 0.0029 30.6 23.3 272 169-460 228-537 (552)
393 KOG2471 TPR repeat-containing 69.3 1.1E+02 0.0024 30.0 11.7 322 79-409 9-380 (696)
394 PF08311 Mad3_BUB1_I: Mad3/BUB 69.3 52 0.0011 25.6 8.8 42 416-457 81-124 (126)
395 KOG0376 Serine-threonine phosp 69.0 3.7 8.1E-05 39.2 2.4 101 331-438 10-112 (476)
396 KOG0551 Hsp90 co-chaperone CNS 68.7 32 0.00069 31.6 7.9 95 363-457 83-178 (390)
397 cd08332 CARD_CASP2 Caspase act 68.7 16 0.00034 26.4 5.1 58 5-67 23-80 (90)
398 PF11663 Toxin_YhaV: Toxin wit 67.8 8.4 0.00018 29.9 3.6 32 64-97 107-138 (140)
399 KOG4077 Cytochrome c oxidase, 67.4 36 0.00078 26.2 6.7 46 393-438 79-124 (149)
400 PF04190 DUF410: Protein of un 66.8 97 0.0021 27.8 15.7 158 34-213 3-170 (260)
401 COG3947 Response regulator con 65.9 33 0.00071 30.9 7.3 60 89-149 281-340 (361)
402 COG4455 ImpE Protein of avirul 65.9 88 0.0019 27.0 11.7 52 261-312 8-62 (273)
403 PRK10941 hypothetical protein; 65.8 32 0.00069 31.0 7.5 64 366-433 186-250 (269)
404 PF13934 ELYS: Nuclear pore co 64.6 98 0.0021 27.1 10.6 101 90-196 79-184 (226)
405 PHA02875 ankyrin repeat protei 63.9 1.5E+02 0.0032 28.8 17.3 13 303-315 298-310 (413)
406 PF08424 NRDE-2: NRDE-2, neces 63.2 1.3E+02 0.0028 28.0 13.7 119 302-428 48-184 (321)
407 PF04781 DUF627: Protein of un 63.2 54 0.0012 24.7 7.0 40 417-456 63-102 (111)
408 PF11846 DUF3366: Domain of un 63.1 31 0.00068 29.2 6.8 32 357-388 140-171 (193)
409 PF09477 Type_III_YscG: Bacter 63.0 40 0.00086 25.2 6.1 52 60-117 48-99 (116)
410 PHA02875 ankyrin repeat protei 62.1 1.6E+02 0.0034 28.6 15.8 15 33-47 11-25 (413)
411 PF12862 Apc5: Anaphase-promot 62.0 31 0.00066 25.1 5.7 54 408-461 8-70 (94)
412 PF04910 Tcf25: Transcriptiona 60.6 1.6E+02 0.0034 28.1 14.0 29 18-46 37-65 (360)
413 PF11846 DUF3366: Domain of un 60.3 25 0.00055 29.8 5.8 36 394-429 140-175 (193)
414 COG4976 Predicted methyltransf 59.0 21 0.00045 30.9 4.7 51 337-389 7-57 (287)
415 PF10366 Vps39_1: Vacuolar sor 58.8 54 0.0012 24.7 6.6 27 186-212 41-67 (108)
416 COG0735 Fur Fe2+/Zn2+ uptake r 58.6 60 0.0013 26.0 7.2 63 73-136 7-69 (145)
417 KOG4279 Serine/threonine prote 58.5 55 0.0012 33.7 8.1 102 325-430 201-319 (1226)
418 KOG3824 Huntingtin interacting 58.1 46 0.00099 30.2 6.8 47 410-456 128-174 (472)
419 PF09986 DUF2225: Uncharacteri 58.1 62 0.0013 28.0 7.7 64 399-462 119-195 (214)
420 cd00280 TRFH Telomeric Repeat 57.5 83 0.0018 26.3 7.7 14 341-354 85-98 (200)
421 cd08326 CARD_CASP9 Caspase act 56.5 40 0.00086 24.0 5.2 33 167-199 44-76 (84)
422 PF14853 Fis1_TPR_C: Fis1 C-te 56.3 50 0.0011 21.0 5.3 35 291-332 7-41 (53)
423 PF11848 DUF3368: Domain of un 55.4 38 0.00082 21.0 4.4 32 99-130 14-45 (48)
424 COG5191 Uncharacterized conser 55.1 22 0.00048 32.2 4.5 81 357-440 103-184 (435)
425 KOG4814 Uncharacterized conser 55.0 2E+02 0.0044 29.3 11.1 89 371-462 364-458 (872)
426 KOG2659 LisH motif-containing 53.7 1.5E+02 0.0033 25.8 9.3 94 287-388 28-130 (228)
427 PF10366 Vps39_1: Vacuolar sor 52.1 1E+02 0.0022 23.2 7.4 27 54-80 41-67 (108)
428 KOG0403 Neoplastic transformat 52.1 2.3E+02 0.0051 27.5 21.0 359 25-412 218-616 (645)
429 KOG3364 Membrane protein invol 52.0 1.1E+02 0.0024 24.1 7.2 67 395-461 29-100 (149)
430 PF12796 Ank_2: Ankyrin repeat 51.7 68 0.0015 22.6 6.2 50 32-87 5-54 (89)
431 PF14689 SPOB_a: Sensor_kinase 51.6 48 0.001 21.9 4.7 25 329-353 27-51 (62)
432 COG4976 Predicted methyltransf 51.4 33 0.00071 29.7 4.7 60 370-432 4-63 (287)
433 PF12862 Apc5: Anaphase-promot 51.0 93 0.002 22.6 6.8 21 333-353 49-69 (94)
434 PF11817 Foie-gras_1: Foie gra 51.0 63 0.0014 28.8 6.9 52 332-383 185-240 (247)
435 PRK13342 recombination factor 50.6 2.5E+02 0.0054 27.4 16.2 97 216-335 173-275 (413)
436 COG2256 MGS1 ATPase related to 50.3 2.4E+02 0.0052 27.1 12.2 52 182-233 244-298 (436)
437 KOG0686 COP9 signalosome, subu 50.2 2.4E+02 0.0052 27.0 13.8 59 155-213 152-216 (466)
438 PF11848 DUF3368: Domain of un 50.1 60 0.0013 20.1 5.2 34 194-227 12-45 (48)
439 PRK10564 maltose regulon perip 49.7 34 0.00074 31.0 4.8 42 182-223 254-296 (303)
440 PF14689 SPOB_a: Sensor_kinase 49.6 42 0.00092 22.1 4.2 26 434-459 25-50 (62)
441 KOG1308 Hsp70-interacting prot 49.4 21 0.00046 32.8 3.6 119 336-461 125-244 (377)
442 KOG2034 Vacuolar sorting prote 49.4 3.6E+02 0.0078 28.8 26.9 51 161-211 366-416 (911)
443 KOG2758 Translation initiation 48.9 73 0.0016 29.1 6.6 31 321-351 31-61 (432)
444 PF11663 Toxin_YhaV: Toxin wit 48.5 24 0.00053 27.5 3.3 33 194-228 105-137 (140)
445 PF10255 Paf67: RNA polymerase 48.5 1.2E+02 0.0026 29.2 8.5 27 432-458 164-190 (404)
446 cd08323 CARD_APAF1 Caspase act 48.3 80 0.0017 22.6 5.7 61 4-69 16-76 (86)
447 KOG0687 26S proteasome regulat 46.7 1.4E+02 0.003 27.6 8.0 28 399-426 105-132 (393)
448 PF14863 Alkyl_sulf_dimr: Alky 46.6 1.3E+02 0.0028 24.0 7.2 63 378-448 58-120 (141)
449 PF00244 14-3-3: 14-3-3 protei 46.5 2.1E+02 0.0045 25.3 12.4 167 290-463 6-200 (236)
450 KOG0545 Aryl-hydrocarbon recep 46.2 2.1E+02 0.0046 25.3 10.7 62 366-430 235-296 (329)
451 PF10255 Paf67: RNA polymerase 46.1 1.2E+02 0.0027 29.1 8.2 55 157-211 126-191 (404)
452 PRK14700 recombination factor 45.9 2.4E+02 0.0052 25.9 9.7 68 183-250 122-197 (300)
453 COG4259 Uncharacterized protei 45.0 1.2E+02 0.0027 22.3 6.6 23 408-430 82-104 (121)
454 COG2909 MalT ATP-dependent tra 44.8 4.2E+02 0.0092 28.4 25.6 182 165-350 470-684 (894)
455 KOG0686 COP9 signalosome, subu 44.3 3E+02 0.0064 26.5 14.1 63 185-247 151-215 (466)
456 PF08424 NRDE-2: NRDE-2, neces 44.3 2.7E+02 0.0059 26.0 18.7 156 341-515 47-223 (321)
457 PHA03100 ankyrin repeat protei 43.5 3.4E+02 0.0074 26.9 15.5 240 25-279 36-305 (480)
458 COG2912 Uncharacterized conser 43.3 1E+02 0.0023 27.6 6.8 58 404-461 187-244 (269)
459 smart00777 Mad3_BUB1_I Mad3/BU 43.0 1.6E+02 0.0034 22.9 8.2 40 417-456 82-123 (125)
460 PF09670 Cas_Cas02710: CRISPR- 42.4 3.2E+02 0.0069 26.3 11.9 56 192-248 139-198 (379)
461 PRK10564 maltose regulon perip 42.4 36 0.00077 30.9 3.9 31 55-85 260-290 (303)
462 COG5159 RPN6 26S proteasome re 42.3 2.7E+02 0.0058 25.3 14.1 197 225-426 9-234 (421)
463 PF14561 TPR_20: Tetratricopep 41.7 1.3E+02 0.0029 21.7 7.9 29 361-389 22-50 (90)
464 PF11817 Foie-gras_1: Foie gra 41.5 1.9E+02 0.0042 25.7 8.5 55 403-457 183-243 (247)
465 KOG2422 Uncharacterized conser 41.1 4E+02 0.0086 27.0 12.4 55 59-113 349-404 (665)
466 cd08332 CARD_CASP2 Caspase act 40.8 80 0.0017 22.8 4.8 27 169-195 50-76 (90)
467 KOG0687 26S proteasome regulat 40.4 3.1E+02 0.0067 25.5 9.6 25 363-387 106-130 (393)
468 KOG2300 Uncharacterized conser 40.2 3.8E+02 0.0082 26.5 27.5 119 195-313 334-473 (629)
469 KOG0889 Histone acetyltransfer 40.1 9.2E+02 0.02 30.9 20.2 58 19-79 2452-2509(3550)
470 cd08330 CARD_ASC_NALP1 Caspase 39.8 94 0.002 22.0 5.0 55 4-63 17-71 (82)
471 COG5187 RPN7 26S proteasome re 39.8 2.8E+02 0.006 25.2 8.7 109 348-458 102-218 (412)
472 PF07720 TPR_3: Tetratricopept 39.0 77 0.0017 18.2 4.6 14 407-420 10-23 (36)
473 PF10155 DUF2363: Uncharacteri 38.9 1.9E+02 0.0041 22.6 10.6 110 36-148 4-124 (126)
474 PRK11639 zinc uptake transcrip 38.5 1.3E+02 0.0029 24.8 6.5 58 80-138 19-76 (169)
475 KOG4567 GTPase-activating prot 38.2 3.2E+02 0.007 25.1 10.0 91 305-412 263-363 (370)
476 KOG0991 Replication factor C, 37.8 2.9E+02 0.0062 24.4 13.3 82 321-408 190-282 (333)
477 cd08329 CARD_BIRC2_BIRC3 Caspa 37.6 96 0.0021 22.6 4.9 52 6-62 27-78 (94)
478 cd08323 CARD_APAF1 Caspase act 37.2 1.5E+02 0.0032 21.2 5.6 32 167-198 42-73 (86)
479 PHA02791 ankyrin-like protein; 36.4 3.4E+02 0.0073 24.8 12.6 20 159-178 131-150 (284)
480 cd08327 CARD_RAIDD Caspase act 36.2 1.7E+02 0.0037 21.4 6.1 33 31-63 45-77 (94)
481 cd08810 CARD_BCL10 Caspase act 36.1 1.4E+02 0.003 21.3 5.2 56 5-66 19-74 (84)
482 PF06957 COPI_C: Coatomer (COP 35.9 4.2E+02 0.0092 25.8 10.2 38 394-431 294-333 (422)
483 PF14669 Asp_Glu_race_2: Putat 35.8 2.7E+02 0.0059 23.6 13.9 56 224-279 137-206 (233)
484 KOG2297 Predicted translation 35.5 2.1E+02 0.0045 26.2 7.3 165 9-205 155-342 (412)
485 COG5108 RPO41 Mitochondrial DN 35.4 2.9E+02 0.0062 28.5 8.9 70 127-196 33-115 (1117)
486 cd07153 Fur_like Ferric uptake 34.9 97 0.0021 23.4 4.9 45 58-102 6-50 (116)
487 COG0790 FOG: TPR repeat, SEL1 34.7 3.5E+02 0.0077 24.5 20.6 147 300-463 92-268 (292)
488 TIGR02270 conserved hypothetic 34.6 4.4E+02 0.0096 25.7 24.9 44 121-164 99-142 (410)
489 PF08311 Mad3_BUB1_I: Mad3/BUB 34.4 2.2E+02 0.0048 22.1 10.5 45 379-424 81-125 (126)
490 COG0735 Fur Fe2+/Zn2+ uptake r 33.2 2.5E+02 0.0055 22.5 7.2 60 208-268 10-69 (145)
491 PF14669 Asp_Glu_race_2: Putat 32.8 3.1E+02 0.0067 23.3 13.1 57 329-386 136-206 (233)
492 PF12926 MOZART2: Mitotic-spin 32.6 1.9E+02 0.0041 20.7 6.6 42 108-149 29-70 (88)
493 KOG3807 Predicted membrane pro 32.5 4.1E+02 0.009 24.7 13.7 223 257-520 188-410 (556)
494 PF00244 14-3-3: 14-3-3 protei 32.2 3.6E+02 0.0077 23.8 10.3 59 189-247 6-65 (236)
495 COG4941 Predicted RNA polymera 32.2 4.3E+02 0.0093 24.8 12.3 124 299-432 270-399 (415)
496 PF12968 DUF3856: Domain of Un 32.0 2.4E+02 0.0052 21.8 8.3 57 402-458 59-126 (144)
497 PRK09857 putative transposase; 32.0 2.6E+02 0.0057 25.6 7.9 64 403-466 211-274 (292)
498 KOG0292 Vesicle coat complex C 31.4 80 0.0017 33.3 4.7 123 298-462 606-728 (1202)
499 PF10345 Cohesin_load: Cohesin 31.2 6.2E+02 0.013 26.3 33.7 190 266-460 373-605 (608)
500 COG4259 Uncharacterized protei 31.1 2.2E+02 0.0048 21.0 6.0 60 341-405 53-112 (121)
No 1
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=1.6e-73 Score=597.78 Aligned_cols=487 Identities=30% Similarity=0.541 Sum_probs=452.4
Q ss_pred chHhHHHHHHHHhCCCCCChhHHHHHHHHhhccCCchhHHHHhccCCCCCcccHHHHHHHHHhCCCchHHHHHHHHHHHC
Q 038200 2 KQLLQIQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKN 81 (523)
Q Consensus 2 ~~~~~i~~~~~~~g~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~ 81 (523)
..++++|..+.+.|+. +++.+++.|+.+|+++|++++|.++|++|++||.++||++|.+|++.|++++|+++|++|.+.
T Consensus 204 ~~~~~~~~~~~~~g~~-~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~ 282 (857)
T PLN03077 204 ARGREVHAHVVRFGFE-LDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMREL 282 (857)
T ss_pred hhHHHHHHHHHHcCCC-cccchHhHHHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHc
Confidence 4578999999999999 999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCcccHHHHHHHHHccCCchHHHHHHHHHHHhCCCCCchHHHHHHHHHHccCChHHHHHHHhhcCCCCcchHHHHHH
Q 038200 82 GFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVS 161 (523)
Q Consensus 82 ~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~ 161 (523)
|+.||..||+.++.+|++.|+++.+.+++..|.+.|+.||..+||.|+.+|++.|++++|.++|++|.+||..+||++|.
T Consensus 283 g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~ 362 (857)
T PLN03077 283 SVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMIS 362 (857)
T ss_pred CCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999888888888887
Q ss_pred HHHhcCCHHHHHHHHh----------------------------------------------------------------
Q 038200 162 GHVRSGDMSAAHELFD---------------------------------------------------------------- 177 (523)
Q Consensus 162 ~~~~~~~~~~a~~~~~---------------------------------------------------------------- 177 (523)
+|++.|++++|.++|+
T Consensus 363 ~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~ 442 (857)
T PLN03077 363 GYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDK 442 (857)
T ss_pred HHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHH
Confidence 7665555555555554
Q ss_pred ------cCCCCChhHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHcCCC
Q 038200 178 ------IMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLK 251 (523)
Q Consensus 178 ------~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 251 (523)
+|.++|..+|+.+|.+|++.|+.++|+.+|++|.. ++.||..||+.++.+|++.|+++.+.+++..+.+.|+.
T Consensus 443 A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~ 521 (857)
T PLN03077 443 ALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIG 521 (857)
T ss_pred HHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCC
Confidence 44455666677777777777777777777777765 48999999999999999999999999999999999999
Q ss_pred CchHHHHHHhhhhhhcCChHHHHHHHHhcCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcCCCHHHHHHH
Q 038200 252 PNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGV 331 (523)
Q Consensus 252 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~l 331 (523)
++..++++|+++|+++|++++|.++|+.+ .+|..+||++|.+|++.|+.++|+++|++|.+.| +.||..||+.+
T Consensus 522 ~~~~~~naLi~~y~k~G~~~~A~~~f~~~-~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g-----~~Pd~~T~~~l 595 (857)
T PLN03077 522 FDGFLPNALLDLYVRCGRMNYAWNQFNSH-EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESG-----VNPDEVTFISL 595 (857)
T ss_pred ccceechHHHHHHHHcCCHHHHHHHHHhc-CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcC-----CCCCcccHHHH
Confidence 99999999999999999999999999999 8999999999999999999999999999999999 99999999999
Q ss_pred HHHHhhcCcHHHHHHHHHHhhHhcCCCCChHHHHHHHHHHHcCCChHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHhc
Q 038200 332 ICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQ 411 (523)
Q Consensus 332 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 411 (523)
+.+|++.|.+++|.++|+.|.+.+|+.|+..+|++++++|++.|++++|.+++++|. +.||..+|.+++.+|..+
T Consensus 596 l~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~-----~~pd~~~~~aLl~ac~~~ 670 (857)
T PLN03077 596 LCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMP-----ITPDPAVWGALLNACRIH 670 (857)
T ss_pred HHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCC-----CCCCHHHHHHHHHHHHHc
Confidence 999999999999999999999767999999999999999999999999999999997 799999999999999999
Q ss_pred CCHHHHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCCceeEEEeCCeEEEEecCC---CCc
Q 038200 412 GAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLKEVVEKLKVGH---FWR 488 (523)
Q Consensus 412 g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~ 488 (523)
|+.+.++...+++.+++|+++..|..|.++|+..|+|++|.++.+.|+++|+++.|+++|+++++.+|.|..+| |+.
T Consensus 671 ~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~g~s~ie~~~~~~~f~~~d~~h~~~ 750 (857)
T PLN03077 671 RHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVEVKGKVHAFLTDDESHPQI 750 (857)
T ss_pred CChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCCCCccEEEECCEEEEEecCCCCCcch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999 778
Q ss_pred hHHHHHHHHHHhc
Q 038200 489 GGMKEEVNKMMEC 501 (523)
Q Consensus 489 ~~~~~~l~~~~~~ 501 (523)
++..+.|+++.+.
T Consensus 751 ~~i~~~l~~l~~~ 763 (857)
T PLN03077 751 KEINTVLEGFYEK 763 (857)
T ss_pred HHHHHHHHHHHHH
Confidence 8877766655443
No 2
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=1.9e-71 Score=568.78 Aligned_cols=485 Identities=24% Similarity=0.418 Sum_probs=464.9
Q ss_pred chHhHHHHHHHHhC-CCCCChhHHHHHHHHhhccCCchhHHHHhccCC----CCCcccHHHHHHHHHhCCCchHHHHHHH
Q 038200 2 KQLLQIQAHLITSG-LFFNNSFWTINLLKHSADFGSPDYTVLVFKCIN----NPGTFCVNAVIKAYSNSCVPDQGVVFYL 76 (523)
Q Consensus 2 ~~~~~i~~~~~~~g-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~ll~~~~~~~~~~~a~~~~~ 76 (523)
++|..++..|.+.+ .. ++..+|+.++.+|++.++++.|.+++..|. .||..+||.++..|++.|+++.|.++|+
T Consensus 104 ~~Al~~f~~m~~~~~~~-~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~ 182 (697)
T PLN03081 104 REALELFEILEAGCPFT-LPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFD 182 (697)
T ss_pred HHHHHHHHHHHhcCCCC-CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHhcCCCHHHHHHHHh
Confidence 46788899998875 66 899999999999999999999999998875 5899999999999999999999999999
Q ss_pred HHHHCCCCCCcccHHHHHHHHHccCCchHHHHHHHHHHHhCCCCCchHHHHHHHHHHccCChHHHHHHHhhcC----CCC
Q 038200 77 QMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMS----PRD 152 (523)
Q Consensus 77 ~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~ 152 (523)
+|. .||..+|++++.+|++.|++++|.++|++|.+.|+.|+..+|+.++.+|++.|..+.+.+++..+. .+|
T Consensus 183 ~m~----~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d 258 (697)
T PLN03081 183 EMP----ERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGD 258 (697)
T ss_pred cCC----CCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCcc
Confidence 996 489999999999999999999999999999999999999999999999999999999999988775 579
Q ss_pred cchHHHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc
Q 038200 153 LISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRS 232 (523)
Q Consensus 153 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~ 232 (523)
..+|++++.+|++.|++++|.++|++|.++|+.+||+||.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.
T Consensus 259 ~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~ 338 (697)
T PLN03081 259 TFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRL 338 (697)
T ss_pred ceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccHHHHHHHHHHHHHcCCCCchHHHHHHhhhhhhcCChHHHHHHHHhcCCCChHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 038200 233 ARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALV 312 (523)
Q Consensus 233 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 312 (523)
|++++|.+++..|.+.|+.|+..++++|+++|+++|++++|.++|++|.++|..+||+||.+|++.|+.++|+++|++|.
T Consensus 339 g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~ 418 (697)
T PLN03081 339 ALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMI 418 (697)
T ss_pred cchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCCCCCcCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhHhcCCCCChHHHHHHHHHHHcCCChHHHHHHHHhCCCCCC
Q 038200 313 NGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDND 392 (523)
Q Consensus 313 ~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 392 (523)
+.| +.||..||+.++.+|++.|.+++|.++|+.|.+.+|+.|+..+|+.++++|++.|++++|.+++++|.
T Consensus 419 ~~g-----~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~---- 489 (697)
T PLN03081 419 AEG-----VAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAP---- 489 (697)
T ss_pred HhC-----CCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHCC----
Confidence 999 99999999999999999999999999999999877999999999999999999999999999999997
Q ss_pred CCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCCceeEE
Q 038200 393 NMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLV 472 (523)
Q Consensus 393 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ 472 (523)
+.|+..+|+.++.+|..+|+.+.|..+++++.+++|++..+|..|+++|++.|+|++|.+++++|+++|+.+.|+++|+
T Consensus 490 -~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~~g~s~i 568 (697)
T PLN03081 490 -FKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPACTWI 568 (697)
T ss_pred -CCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCccCCCeeEE
Confidence 7899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeCCeEEEEecCC---CCchHHHHHHHHHHhc
Q 038200 473 DLKEVVEKLKVGH---FWRGGMKEEVNKMMEC 501 (523)
Q Consensus 473 ~~~~~~~~~~~~~---~~~~~~~~~l~~~~~~ 501 (523)
++.+.+|.|..+| |+.++..+.++++.+.
T Consensus 569 ~~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~ 600 (697)
T PLN03081 569 EVKKQDHSFFSGDRLHPQSREIYQKLDELMKE 600 (697)
T ss_pred EECCeEEEEccCCCCCccHHHHHHHHHHHHHH
Confidence 9999999999998 7777777776665554
No 3
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=2.4e-65 Score=536.21 Aligned_cols=490 Identities=23% Similarity=0.419 Sum_probs=400.2
Q ss_pred chHhHHHHHHHHhCCCCCChhHHHHHHHHhhccCCchhHHHHhccCCCCCcccHHHHHHHHHhCCCchHHHHHHHHHHHC
Q 038200 2 KQLLQIQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKN 81 (523)
Q Consensus 2 ~~~~~i~~~~~~~g~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~ 81 (523)
..++++|..+.+.|.. ++..+++.|+..|+++|+++.|.++|++|++||.++||.+|.+|++.|++++|+++|++|...
T Consensus 103 ~~a~~~~~~~~~~~~~-~~~~~~n~li~~~~~~g~~~~A~~~f~~m~~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~ 181 (857)
T PLN03077 103 EEGSRVCSRALSSHPS-LGVRLGNAMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWA 181 (857)
T ss_pred HHHHHHHHHHHHcCCC-CCchHHHHHHHHHHhCCChHHHHHHHhcCCCCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHc
Confidence 3578899999999998 899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCcccHHHHHHHHHccCCchHHHHHHHHHHHhCCCCCchHHHHHHHHHHccCChHHHHHHHhhcCCCCcchHHHHHH
Q 038200 82 GFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVS 161 (523)
Q Consensus 82 ~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~ 161 (523)
|+.||..||+.++.+|+..+++..+.+++..+.+.|+.||..++|.|+.+|++.|+++.|.++|++|..+|..+||++|.
T Consensus 182 g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~ 261 (857)
T PLN03077 182 GVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMIS 261 (857)
T ss_pred CCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999998777666666666
Q ss_pred HH----------------------------------------------------------------------HhcCCHHH
Q 038200 162 GH----------------------------------------------------------------------VRSGDMSA 171 (523)
Q Consensus 162 ~~----------------------------------------------------------------------~~~~~~~~ 171 (523)
+| ++.|++++
T Consensus 262 ~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~ 341 (857)
T PLN03077 262 GYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGE 341 (857)
T ss_pred HHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHH
Confidence 54 45666677
Q ss_pred HHHHHhcCCCCChhHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHcCCC
Q 038200 172 AHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLK 251 (523)
Q Consensus 172 a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 251 (523)
|.++|++|..||..+||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+++.|.++++.+.+.|+.
T Consensus 342 A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~ 421 (857)
T PLN03077 342 AEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLI 421 (857)
T ss_pred HHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCC
Confidence 77777777778889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CchHHHHHHhhhhhhcCChHHHHHHHHhcCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcCCCHHHHHHH
Q 038200 252 PNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGV 331 (523)
Q Consensus 252 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~l 331 (523)
|+..++++|+++|+++|++++|.++|++|.++|..+|+++|.+|++.|+.++|+.+|++|.. + +.||..||+.+
T Consensus 422 ~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~-----~~pd~~t~~~l 495 (857)
T PLN03077 422 SYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-T-----LKPNSVTLIAA 495 (857)
T ss_pred cchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-C-----CCCCHhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999986 4 78999999999
Q ss_pred HHHHhhcCcHHHHHHHHHHhhHhcCCCC------------------------------ChHHHHHHHHHHHcCCChHHHH
Q 038200 332 ICACVRAELLTEGRKYFRQMIDFYKIKP------------------------------NFAHYWCMANLYAGAELTEEAE 381 (523)
Q Consensus 332 l~~~~~~~~~~~a~~~~~~~~~~~~~~~------------------------------~~~~~~~l~~~~~~~g~~~~A~ 381 (523)
+.+|++.|..+.+.+++..+.+. |+.+ |..+|+.||.+|++.|+.++|.
T Consensus 496 L~a~~~~g~l~~~~~i~~~~~~~-g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~~~d~~s~n~lI~~~~~~G~~~~A~ 574 (857)
T PLN03077 496 LSACARIGALMCGKEIHAHVLRT-GIGFDGFLPNALLDLYVRCGRMNYAWNQFNSHEKDVVSWNILLTGYVAHGKGSMAV 574 (857)
T ss_pred HHHHhhhchHHHhHHHHHHHHHh-CCCccceechHHHHHHHHcCCHHHHHHHHHhcCCChhhHHHHHHHHHHcCCHHHHH
Confidence 99888888888888888777765 6655 4555555555555556666666
Q ss_pred HHHHhCCCCCCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHhh---cCCCChhhHHHHHHHHHhcCChhHHHHHHHHH
Q 038200 382 EILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVD---MDPQDFSRYQFLLNVYAVAGQWEDVARVRELM 458 (523)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 458 (523)
++|++|.+ .|+.||..||+.++.+|.+.|++++|.++|+.|.+ ..| +..+|..++.+|.+.|++++|.+++++|
T Consensus 575 ~lf~~M~~--~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P-~~~~y~~lv~~l~r~G~~~eA~~~~~~m 651 (857)
T PLN03077 575 ELFNRMVE--SGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITP-NLKHYACVVDLLGRAGKLTEAYNFINKM 651 (857)
T ss_pred HHHHHHHH--cCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCC-chHHHHHHHHHHHhCCCHHHHHHHHHHC
Confidence 66666652 34566666666666666666666666666666652 233 4456666666666666666666666655
Q ss_pred HhCCCccCCceeEEEeCCeEEEEecCCCCchHHHHHHHHHHhcccCCccccc
Q 038200 459 KKRRMGRMPGCRLVDLKEVVEKLKVGHFWRGGMKEEVNKMMECRQSRSLATV 510 (523)
Q Consensus 459 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 510 (523)
.++|++.. +...+..... ..+.+.+....+++++++|++.....
T Consensus 652 ---~~~pd~~~----~~aLl~ac~~-~~~~e~~e~~a~~l~~l~p~~~~~y~ 695 (857)
T PLN03077 652 ---PITPDPAV----WGALLNACRI-HRHVELGELAAQHIFELDPNSVGYYI 695 (857)
T ss_pred ---CCCCCHHH----HHHHHHHHHH-cCChHHHHHHHHHHHhhCCCCcchHH
Confidence 13333321 1111111111 12344455556677777777665444
No 4
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=8.3e-64 Score=514.69 Aligned_cols=489 Identities=13% Similarity=0.202 Sum_probs=421.6
Q ss_pred chHhHHHHHHHHhCCCCCChhHHHHHHHHhhccCCchhHHHHhccCCCCCcccHHHHHHHHHhCCCchHHHHHHHHHHHC
Q 038200 2 KQLLQIQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKN 81 (523)
Q Consensus 2 ~~~~~i~~~~~~~g~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~ 81 (523)
+.|+++++.|.+.|+.+++...++.++..|.+.|.+++|.++|+.|..||..+|+.+|.+|++.|+++.|.++|+.|.+.
T Consensus 387 ~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~ 466 (1060)
T PLN03218 387 KDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRNPTLSTFNMLMSVCASSQDIDGALRVLRLVQEA 466 (1060)
T ss_pred HHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHc
Confidence 56889999999999865888888899999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCcccHHHHHHHHHccCCchHHHHHHHHHHHhCCCCCchHHHHHHHHHHccCChHHHHHHHhhcC----CCCcchHH
Q 038200 82 GFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMS----PRDLISWN 157 (523)
Q Consensus 82 ~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~~~~ 157 (523)
|+.||..+|+++|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|. .||..+|+
T Consensus 467 Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYn 546 (1060)
T PLN03218 467 GLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFN 546 (1060)
T ss_pred CCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999996 57889999
Q ss_pred HHHHHHHhcCCHHHHHHHHhcCC------CCChhHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc
Q 038200 158 SIVSGHVRSGDMSAAHELFDIMP------ERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGR 231 (523)
Q Consensus 158 ~ll~~~~~~~~~~~a~~~~~~~~------~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 231 (523)
.+|.+|++.|++++|.++|++|. .||..+|+++|.+|++.|++++|.++|+.|.+.|+.|+..+|+.++.+|++
T Consensus 547 sLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k 626 (1060)
T PLN03218 547 ALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQ 626 (1060)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHh
Confidence 99999999999999999999884 378899999999999999999999999999999999999999999999999
Q ss_pred cccHHHHHHHHHHHHHcCCCCchHHHHHHhhhhhhcCChHHHHHHHHhcCC----CChHHHHHHHHHHHhcCChHHHHHH
Q 038200 232 SARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMAD----RNLVCWNAMILGHCIHGKPEEGIKL 307 (523)
Q Consensus 232 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~a~~~ 307 (523)
.|++++|..+|++|.+.|+.||..+|++++.+|++.|++++|.++|++|.+ |+..+|+++|.+|++.|++++|.++
T Consensus 627 ~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~l 706 (1060)
T PLN03218 627 KGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALEL 706 (1060)
T ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHH
Confidence 999999999999999999999999999999999999999999999999864 7888999999999999999999999
Q ss_pred HHHHHhCCCCCCCcCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhHhcCCCCChHHHHHHHHHHHcCCChHHHHHHHHhC
Q 038200 308 FTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKM 387 (523)
Q Consensus 308 ~~~m~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 387 (523)
|++|...+ +.||..+|+.||.+|++.|++++|.++|++|.+. |+.||..+|+.++.+|++.|++++|.+++.+|
T Consensus 707 f~eM~~~g-----~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~-Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M 780 (1060)
T PLN03218 707 YEDIKSIK-----LRPTVSTMNALITALCEGNQLPKALEVLSEMKRL-GLCPNTITYSILLVASERKDDADVGLDLLSQA 780 (1060)
T ss_pred HHHHHHcC-----CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 99999888 8899999999999999999999999999999886 99999999999999999999999999999999
Q ss_pred CCCCCCCCchHHHHHHHHHHHHh----c-------------------CCHHHHHHHHHHHhhcC--CCChhhHHHHHHHH
Q 038200 388 PEDNDNMSFESIMWVSLLSLCRF----Q-------------------GAVAMVERLAKSFVDMD--PQDFSRYQFLLNVY 442 (523)
Q Consensus 388 ~~~~~~~~~~~~~~~~l~~~~~~----~-------------------g~~~~a~~~~~~~~~~~--p~~~~~~~~l~~~~ 442 (523)
.+ .|+.||..+|+.++..|.+ . +..+.|..+|++|.+.+ | +..+|..++.++
T Consensus 781 ~k--~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~P-d~~T~~~vL~cl 857 (1060)
T PLN03218 781 KE--DGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAGTLP-TMEVLSQVLGCL 857 (1060)
T ss_pred HH--cCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHh
Confidence 84 4688999999988866542 1 12367888888888744 4 667888888777
Q ss_pred HhcCChhHHHHHHHHHHhCCCccCCceeEEEeCCeEEEEecCCCCchHHHHHHHHHHhcccCCc
Q 038200 443 AVAGQWEDVARVRELMKKRRMGRMPGCRLVDLKEVVEKLKVGHFWRGGMKEEVNKMMECRQSRS 506 (523)
Q Consensus 443 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 506 (523)
+..+....+..+++.|...+..++. ..++..++.+.. ...+|+..++++.+..--..
T Consensus 858 ~~~~~~~~~~~m~~~m~~~~~~~~~----~~y~~Li~g~~~---~~~~A~~l~~em~~~Gi~p~ 914 (1060)
T PLN03218 858 QLPHDATLRNRLIENLGISADSQKQ----SNLSTLVDGFGE---YDPRAFSLLEEAASLGVVPS 914 (1060)
T ss_pred cccccHHHHHHHHHHhccCCCCcch----hhhHHHHHhhcc---ChHHHHHHHHHHHHcCCCCC
Confidence 7888888888888877655544333 224444444421 12568888888877644333
No 5
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=3e-62 Score=503.21 Aligned_cols=450 Identities=17% Similarity=0.229 Sum_probs=415.9
Q ss_pred HhHHHHHHHHhCCCCCChhHHHHHHHHhhccCCchhHHHHhccCC----CCCcccHHHHHHHHHhCCCchHHHHHHHHHH
Q 038200 4 LLQIQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCIN----NPGTFCVNAVIKAYSNSCVPDQGVVFYLQMI 79 (523)
Q Consensus 4 ~~~i~~~~~~~g~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~ 79 (523)
|..++..|. . |+..+|+.++.+|++.|+++.|.++|+.|. .||..+|+.||.+|++.|++++|.++|++|.
T Consensus 425 Al~lf~~M~----~-pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~ 499 (1060)
T PLN03218 425 AFRFAKLIR----N-PTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMV 499 (1060)
T ss_pred HHHHHHHcC----C-CCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHH
Confidence 444555443 4 799999999999999999999999999986 5899999999999999999999999999999
Q ss_pred HCCCCCCcccHHHHHHHHHccCCchHHHHHHHHHHHhCCCCCchHHHHHHHHHHccCChHHHHHHHhhcC------CCCc
Q 038200 80 KNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMS------PRDL 153 (523)
Q Consensus 80 ~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~------~~~~ 153 (523)
+.|+.||..||+.+|.+|++.|++++|.++|+.|.+.|+.||..+|+.|+.+|++.|++++|.++|++|. .||.
T Consensus 500 ~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~ 579 (1060)
T PLN03218 500 NAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDH 579 (1060)
T ss_pred HcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999995 5799
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHhcCCC----CChhHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 038200 154 ISWNSIVSGHVRSGDMSAAHELFDIMPE----RNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTAC 229 (523)
Q Consensus 154 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~ 229 (523)
.+|+++|.+|++.|++++|.++|++|.+ |+..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|
T Consensus 580 vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~ 659 (1060)
T PLN03218 580 ITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVA 659 (1060)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 9999999999999999999999999975 678999999999999999999999999999999999999999999999
Q ss_pred hccccHHHHHHHHHHHHHcCCCCchHHHHHHhhhhhhcCChHHHHHHHHhcC----CCChHHHHHHHHHHHhcCChHHHH
Q 038200 230 GRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMA----DRNLVCWNAMILGHCIHGKPEEGI 305 (523)
Q Consensus 230 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~a~ 305 (523)
++.|++++|.++++.|.+.|+.|+..+|++||.+|++.|++++|.++|++|. .||..+|+.||.+|++.|++++|.
T Consensus 660 ~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAl 739 (1060)
T PLN03218 660 GHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKAL 739 (1060)
T ss_pred HhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHH
Confidence 9999999999999999999999999999999999999999999999999994 589999999999999999999999
Q ss_pred HHHHHHHhCCCCCCCcCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhHhcCCCCChHHHHHHHHHHHc----C-------
Q 038200 306 KLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAG----A------- 374 (523)
Q Consensus 306 ~~~~~m~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~------- 374 (523)
++|++|...| +.||..||+.++.+|++.|++++|.++|+.|.+. |+.||..+|++|+.+|.+ +
T Consensus 740 elf~eM~~~G-----i~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~-Gi~pd~~tynsLIglc~~~y~ka~~l~~~v 813 (1060)
T PLN03218 740 EVLSEMKRLG-----LCPNTITYSILLVASERKDDADVGLDLLSQAKED-GIKPNLVMCRCITGLCLRRFEKACALGEPV 813 (1060)
T ss_pred HHHHHHHHcC-----CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 9999999999 9999999999999999999999999999999997 999999999999876432 1
Q ss_pred ------------CChHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHhh-cCCCChhhHHHHHHH
Q 038200 375 ------------ELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVD-MDPQDFSRYQFLLNV 441 (523)
Q Consensus 375 ------------g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~p~~~~~~~~l~~~ 441 (523)
+..++|..+|++|.+ .|+.||..+|+.++.++...+....+..+++.+.. -.+.+..+|+.|+++
T Consensus 814 ~~f~~g~~~~~n~w~~~Al~lf~eM~~--~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g 891 (1060)
T PLN03218 814 VSFDSGRPQIENKWTSWALMVYRETIS--AGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDG 891 (1060)
T ss_pred hhhhccccccccchHHHHHHHHHHHHH--CCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHh
Confidence 224679999999994 56999999999999877788889998888887653 334477899999998
Q ss_pred HHhcCChhHHHHHHHHHHhCCCccCCc
Q 038200 442 YAVAGQWEDVARVRELMKKRRMGRMPG 468 (523)
Q Consensus 442 ~~~~g~~~~A~~~~~~m~~~~~~~~~~ 468 (523)
+.+. .++|..++++|.+.|+.|+..
T Consensus 892 ~~~~--~~~A~~l~~em~~~Gi~p~~~ 916 (1060)
T PLN03218 892 FGEY--DPRAFSLLEEAASLGVVPSVS 916 (1060)
T ss_pred hccC--hHHHHHHHHHHHHcCCCCCcc
Confidence 8432 368999999999999988764
No 6
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=6.5e-59 Score=476.39 Aligned_cols=450 Identities=18% Similarity=0.224 Sum_probs=411.5
Q ss_pred chHhHHHHHHHHhCCCCCChhHHHHHHHHhhccCCchhHHHHhccCCCCCcccHHHHHHHHHhCCCchHHHHHHHHHHHC
Q 038200 2 KQLLQIQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKN 81 (523)
Q Consensus 2 ~~~~~i~~~~~~~g~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~ 81 (523)
+.++++|..|.+.|+. |++.+++.|+.+|+++|++++|.++|++|++||.++||.+|.+|++.|++++|+++|++|.+.
T Consensus 140 ~~a~~l~~~m~~~g~~-~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~ 218 (697)
T PLN03081 140 RCVKAVYWHVESSGFE-PDQYMMNRVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWED 218 (697)
T ss_pred HHHHHHHHHHHHhCCC-cchHHHHHHHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHh
Confidence 4578999999999999 999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCcccHHHHHHHHHccCCchHHHHHHHHHHHhCCCCCchHHHHHHHHHHccCChHHHHHHHhhcCCCCcchHHHHHH
Q 038200 82 GFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVS 161 (523)
Q Consensus 82 ~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~ 161 (523)
|+.||..||+.++.+|++.|..+.+.+++..+.+.|+.||..+|++|+++|+++|++++|.++|++|.++|..+||++|.
T Consensus 219 g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~ 298 (697)
T PLN03081 219 GSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLA 298 (697)
T ss_pred CCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCHHHHHHHHhcCC----CCChhHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHH
Q 038200 162 GHVRSGDMSAAHELFDIMP----ERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNE 237 (523)
Q Consensus 162 ~~~~~~~~~~a~~~~~~~~----~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~ 237 (523)
+|++.|+.++|.++|++|. .||..||+.++.+|++.|++++|.+++..|.+.|+.||..+|+.++.+|++.|++++
T Consensus 299 ~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~ 378 (697)
T PLN03081 299 GYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMED 378 (697)
T ss_pred HHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHH
Confidence 9999999999999999995 489999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCCCchHHHHHHhhhhhhcCChHHHHHHHHhcC----CCChHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 038200 238 GRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMA----DRNLVCWNAMILGHCIHGKPEEGIKLFTALVN 313 (523)
Q Consensus 238 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 313 (523)
|.++|+.|. .||..+||++|.+|++.|+.++|.++|++|. .||..||++++.+|++.|.+++|.++|+.|.+
T Consensus 379 A~~vf~~m~----~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~ 454 (697)
T PLN03081 379 ARNVFDRMP----RKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSE 454 (697)
T ss_pred HHHHHHhCC----CCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHH
Confidence 999999985 4789999999999999999999999999995 48999999999999999999999999999986
Q ss_pred -CCCCCCCcCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhHhcCCCCChHHHHHHHHHHHcCCChHHHHHHHHhCCCCCC
Q 038200 314 -GTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDND 392 (523)
Q Consensus 314 -~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 392 (523)
.| +.|+..+|+.++.+|++.|++++|.++++++ ++.|+..+|+.|+.+|...|+++.|..+++++.+
T Consensus 455 ~~g-----~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~----~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~--- 522 (697)
T PLN03081 455 NHR-----IKPRAMHYACMIELLGREGLLDEAYAMIRRA----PFKPTVNMWAALLTACRIHKNLELGRLAAEKLYG--- 522 (697)
T ss_pred hcC-----CCCCccchHhHHHHHHhcCCHHHHHHHHHHC----CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhC---
Confidence 46 8999999999999999999999999999876 6789999999999999999999999999999984
Q ss_pred CCCc-hHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCC--ChhhHHHHH--------H--HH-HhcCChhHHHHHHHHH
Q 038200 393 NMSF-ESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQ--DFSRYQFLL--------N--VY-AVAGQWEDVARVRELM 458 (523)
Q Consensus 393 ~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~--~~~~~~~l~--------~--~~-~~~g~~~~A~~~~~~m 458 (523)
..| +..+|..++..|.+.|++++|.++++.|.+.+-. ...+|..+. . .. ....-++...++..+|
T Consensus 523 -~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~~g~s~i~~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~ 601 (697)
T PLN03081 523 -MGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPACTWIEVKKQDHSFFSGDRLHPQSREIYQKLDELMKEI 601 (697)
T ss_pred -CCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCccCCCeeEEEECCeEEEEccCCCCCccHHHHHHHHHHHHHHH
Confidence 455 4678999999999999999999999999975421 111111110 0 00 0011245567788899
Q ss_pred HhCCCccCCce
Q 038200 459 KKRRMGRMPGC 469 (523)
Q Consensus 459 ~~~~~~~~~~~ 469 (523)
++.|+.|+...
T Consensus 602 ~~~gy~~~~~~ 612 (697)
T PLN03081 602 SEYGYVAEENE 612 (697)
T ss_pred HHcCCCCCcch
Confidence 99999887654
No 7
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=1.2e-30 Score=280.15 Aligned_cols=483 Identities=13% Similarity=0.047 Sum_probs=339.0
Q ss_pred hHhHHHHHHHHhCCCCCChhHHHHHHHHhhccCCchhHHHHhccCCC---CCcccHHHHHHHHHhCCCchHHHHHHHHHH
Q 038200 3 QLLQIQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINN---PGTFCVNAVIKAYSNSCVPDQGVVFYLQMI 79 (523)
Q Consensus 3 ~~~~i~~~~~~~g~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~ 79 (523)
.+...+..+.+.. |.++..+..+...+...|++++|.+.|+.... .+...+..++..+.+.|++++|..+++.+.
T Consensus 381 ~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 458 (899)
T TIGR02917 381 KAAEYLAKATELD--PENAAARTQLGISKLSQGDPSEAIADLETAAQLDPELGRADLLLILSYLRSGQFDKALAAAKKLE 458 (899)
T ss_pred HHHHHHHHHHhcC--CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 4555666665543 45777778888888888888888888876542 233455667777888888888888888877
Q ss_pred HCCCCCCcccHHHHHHHHHccCCchHHHHHHHHHHHhCCCCCchHHHHHHHHHHccCChHHHHHHHhhcC---CCCcchH
Q 038200 80 KNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMS---PRDLISW 156 (523)
Q Consensus 80 ~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~ 156 (523)
... +++..++..+...+...|++++|...++++.+..+. +...+..+...+...|++++|.+.|+++. +.+..++
T Consensus 459 ~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 536 (899)
T TIGR02917 459 KKQ-PDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPD-FFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAI 536 (899)
T ss_pred HhC-CCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHH
Confidence 642 556667777888888888888888888887776433 55667777777888888888888887775 3355677
Q ss_pred HHHHHHHHhcCCHHHHHHHHhcCCC---CChhHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccc
Q 038200 157 NSIVSGHVRSGDMSAAHELFDIMPE---RNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSA 233 (523)
Q Consensus 157 ~~ll~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~ 233 (523)
..+...+.+.|+.++|...|+++.+ .+...+..++..+...|++++|..+++.+.+.. +.+..+|..+..++...|
T Consensus 537 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~ 615 (899)
T TIGR02917 537 LALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAA-PDSPEAWLMLGRAQLAAG 615 (899)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcC
Confidence 7777777788888888888877643 345566777777788888888888888777653 456667777777788888
Q ss_pred cHHHHHHHHHHHHHcCCCCchHHHHHHhhhhhhcCChHHHHHHHHhcCC---CChHHHHHHHHHHHhcCChHHHHHHHHH
Q 038200 234 RFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMAD---RNLVCWNAMILGHCIHGKPEEGIKLFTA 310 (523)
Q Consensus 234 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~ 310 (523)
++++|...++.+.+.. +.+...+..+..++...|++++|..+|+++.+ .+..++..++..+...|++++|..+++.
T Consensus 616 ~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 694 (899)
T TIGR02917 616 DLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKS 694 (899)
T ss_pred CHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 8888888888777654 33566677777777778888888888777644 3456777777777777888888888777
Q ss_pred HHhCCCCCCCcCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhHhcCCCCChHHHHHHHHHHHcCCChHHHHHHHHhCCCC
Q 038200 311 LVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPED 390 (523)
Q Consensus 311 m~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 390 (523)
+.... +++...+..+...+...|++++|...|+.+... .|+..++..++.++.+.|++++|.+.++++.+.
T Consensus 695 ~~~~~------~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 765 (899)
T TIGR02917 695 LQKQH------PKAALGFELEGDLYLRQKDYPAAIQAYRKALKR---APSSQNAIKLHRALLASGNTAEAVKTLEAWLKT 765 (899)
T ss_pred HHhhC------cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhh---CCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 77754 345566666777777777788787777777663 344466666777777777777777777777653
Q ss_pred CCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCCcee
Q 038200 391 NDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCR 470 (523)
Q Consensus 391 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~ 470 (523)
.+.+...+..+...|...|+.++|...++++.+..|+++.++..++.++...|+ .+|+.++++..+.. +.++..
T Consensus 766 ---~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~-~~~~~~- 839 (899)
T TIGR02917 766 ---HPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKLA-PNIPAI- 839 (899)
T ss_pred ---CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhC-CCCcHH-
Confidence 344566666667777777777777777777777777777777777777777777 66777777776542 112211
Q ss_pred EEEeCCeEEEEecCCCCchHHHHHHHHHHhcccCCccccc
Q 038200 471 LVDLKEVVEKLKVGHFWRGGMKEEVNKMMECRQSRSLATV 510 (523)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 510 (523)
...........++.+++++.++++++..|++.....
T Consensus 840 ----~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~ 875 (899)
T TIGR02917 840 ----LDTLGWLLVEKGEADRALPLLRKAVNIAPEAAAIRY 875 (899)
T ss_pred ----HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHH
Confidence 111111222335677777777777777777666554
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=5.9e-30 Score=274.87 Aligned_cols=473 Identities=10% Similarity=0.037 Sum_probs=399.2
Q ss_pred hHhHHHHHHHHhCCCCCChhHHHHHHHHhhccCCchhHHHHhccCC---CCCcccHHHHHHHHHhCCCchHHHHHHHHHH
Q 038200 3 QLLQIQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCIN---NPGTFCVNAVIKAYSNSCVPDQGVVFYLQMI 79 (523)
Q Consensus 3 ~~~~i~~~~~~~g~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~ 79 (523)
.+...+....+.. |........++..+.+.|++++|.++++.+. +.+...|+.+...+...|++++|.+.|+++.
T Consensus 415 ~A~~~~~~a~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~ 492 (899)
T TIGR02917 415 EAIADLETAAQLD--PELGRADLLLILSYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKAL 492 (899)
T ss_pred HHHHHHHHHHhhC--CcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 3555566666554 3466677788889999999999999998875 3466789999999999999999999999998
Q ss_pred HCCCCCCcccHHHHHHHHHccCCchHHHHHHHHHHHhCCCCCchHHHHHHHHHHccCChHHHHHHHhhcC---CCCcchH
Q 038200 80 KNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMS---PRDLISW 156 (523)
Q Consensus 80 ~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~ 156 (523)
+.. +.+...+..+...+...|++++|.+.++.+.+.++. +..++..+...+.+.|+.++|...++++. +.+...+
T Consensus 493 ~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 570 (899)
T TIGR02917 493 SIE-PDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPK-NLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPA 570 (899)
T ss_pred hhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHH
Confidence 764 445567788888899999999999999999987644 78889999999999999999999999985 3456778
Q ss_pred HHHHHHHHhcCCHHHHHHHHhcCCC---CChhHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccc
Q 038200 157 NSIVSGHVRSGDMSAAHELFDIMPE---RNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSA 233 (523)
Q Consensus 157 ~~ll~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~ 233 (523)
..+...+...|++++|..+++.+.+ .+...|..+..++...|++++|...|+.+.+.. +.+...+..+..++...|
T Consensus 571 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~ 649 (899)
T TIGR02917 571 LALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMK 649 (899)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcC
Confidence 8899999999999999999999864 467889999999999999999999999998864 446677888999999999
Q ss_pred cHHHHHHHHHHHHHcCCCCchHHHHHHhhhhhhcCChHHHHHHHHhcCC---CChHHHHHHHHHHHhcCChHHHHHHHHH
Q 038200 234 RFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMAD---RNLVCWNAMILGHCIHGKPEEGIKLFTA 310 (523)
Q Consensus 234 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~ 310 (523)
++++|..+++.+.+.. +.+..++..++..+...|++++|..+++.+.+ .+...+..+...+...|++++|...|++
T Consensus 650 ~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~ 728 (899)
T TIGR02917 650 NYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRK 728 (899)
T ss_pred CHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 9999999999998864 34678889999999999999999999999865 3567788889999999999999999999
Q ss_pred HHhCCCCCCCcCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhHhcCCCCChHHHHHHHHHHHcCCChHHHHHHHHhCCCC
Q 038200 311 LVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPED 390 (523)
Q Consensus 311 m~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 390 (523)
+.... |+..++..+..++.+.|++++|.+.++++.+ ..+.+...+..+...|...|++++|.+.|+++.+.
T Consensus 729 ~~~~~-------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 799 (899)
T TIGR02917 729 ALKRA-------PSSQNAIKLHRALLASGNTAEAVKTLEAWLK--THPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKK 799 (899)
T ss_pred HHhhC-------CCchHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHh
Confidence 99854 6667888899999999999999999999988 45667889999999999999999999999999864
Q ss_pred CCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCCcee
Q 038200 391 NDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCR 470 (523)
Q Consensus 391 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~ 470 (523)
.+++...+..+...+...|+ .+|..+++++.+..|+++..+..++.+|...|++++|.++++++.+.+.. ++..
T Consensus 800 ---~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~-~~~~- 873 (899)
T TIGR02917 800 ---APDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPE-AAAI- 873 (899)
T ss_pred ---CCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-ChHH-
Confidence 35577888889999999999 88999999999999999999999999999999999999999999887643 4432
Q ss_pred EEEeCCeEEEEecCCCCchHHHHHHHHHHh
Q 038200 471 LVDLKEVVEKLKVGHFWRGGMKEEVNKMME 500 (523)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 500 (523)
.... .......++.+++.+.++++++
T Consensus 874 ---~~~l-~~~~~~~g~~~~A~~~~~~~~~ 899 (899)
T TIGR02917 874 ---RYHL-ALALLATGRKAEARKELDKLLN 899 (899)
T ss_pred ---HHHH-HHHHHHcCCHHHHHHHHHHHhC
Confidence 2222 2233334578899988888763
No 9
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.94 E-value=1.5e-22 Score=218.39 Aligned_cols=483 Identities=10% Similarity=0.019 Sum_probs=337.9
Q ss_pred HhHHHHHHHHhCCCCCChhHHHHHHHHhhccCCchhHHHHhccCCC--CCcccH-----------------HHHHHHHHh
Q 038200 4 LLQIQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINN--PGTFCV-----------------NAVIKAYSN 64 (523)
Q Consensus 4 ~~~i~~~~~~~g~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~-----------------~~ll~~~~~ 64 (523)
+++.+..+.. ++|.++.++..++..+.+.|+.++|.+.+++..+ |+...+ ..+.+.+.+
T Consensus 47 a~~~l~kl~~--~~p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~P~~~~~~~~~~~~~~~~~~~~~~l~~A~ll~~ 124 (1157)
T PRK11447 47 VRQSLYRLEL--IDPNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLAPDSNAYRSSRTTMLLSTPEGRQALQQARLLAT 124 (1157)
T ss_pred HHHHHHHHHc--cCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHhcCCchhhHHHHHHHHHh
Confidence 4444554444 3567999999999999999999999999988753 332221 233446788
Q ss_pred CCCchHHHHHHHHHHHCCCCCCccc-HHHHHHHHHccCCchHHHHHHHHHHHhCCCCCchHHHHHHHHHHccCChHHHHH
Q 038200 65 SCVPDQGVVFYLQMIKNGFMPNSYT-FVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARN 143 (523)
Q Consensus 65 ~~~~~~a~~~~~~m~~~~~~p~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 143 (523)
.|++++|++.|+.+.+.+ +|+... ...+.......|+.++|...++.+.+..+. +...+..+...+...|+.++|++
T Consensus 125 ~g~~~eA~~~~~~~l~~~-p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~P~-~~~~~~~LA~ll~~~g~~~eAl~ 202 (1157)
T PRK11447 125 TGRTEEALASYDKLFNGA-PPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADYPG-NTGLRNTLALLLFSSGRRDEGFA 202 (1157)
T ss_pred CCCHHHHHHHHHHHccCC-CCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHccCCHHHHHH
Confidence 999999999999998753 344321 111122223458999999999999988644 67788889999999999999999
Q ss_pred HHhhcCCCCc-----------------------chHH----------------------------------HHHHHHHhc
Q 038200 144 MFVQMSPRDL-----------------------ISWN----------------------------------SIVSGHVRS 166 (523)
Q Consensus 144 ~~~~~~~~~~-----------------------~~~~----------------------------------~ll~~~~~~ 166 (523)
.|+++..... ..+. .....+...
T Consensus 203 ~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~~~G~~~~~~ 282 (1157)
T PRK11447 203 VLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRARAQGLAAVDS 282 (1157)
T ss_pred HHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHC
Confidence 9887642100 0000 112335677
Q ss_pred CCHHHHHHHHhcCCC--C-ChhHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCC-CHHHH------------HHHHHHHh
Q 038200 167 GDMSAAHELFDIMPE--R-NVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRG-NDKTM------------ASVLTACG 230 (523)
Q Consensus 167 ~~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~~~------------~~ll~~~~ 230 (523)
|++++|+..|++..+ | +...+..+..++.+.|++++|+..|++..+..... +...+ ......+.
T Consensus 283 g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~ 362 (1157)
T PRK11447 283 GQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAAL 362 (1157)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHH
Confidence 999999999988765 3 67788899999999999999999999988754221 11111 12244567
Q ss_pred ccccHHHHHHHHHHHHHcCCCCchHHHHHHhhhhhhcCChHHHHHHHHhcCC--C-ChHHHHH-----------------
Q 038200 231 RSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMAD--R-NLVCWNA----------------- 290 (523)
Q Consensus 231 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~----------------- 290 (523)
+.|++++|...|+++.+.. +.+...+..+..++...|++++|++.|+++.+ | +...+..
T Consensus 363 ~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~~~~A~~~l 441 (1157)
T PRK11447 363 KANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQSPEKALAFI 441 (1157)
T ss_pred HCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCHHHHHHHH
Confidence 8899999999999998874 33566777788899999999999999988754 2 2222221
Q ss_pred -------------------------HHHHHHhcCChHHHHHHHHHHHhCCCCCCCcCCC-HHHHHHHHHHHhhcCcHHHH
Q 038200 291 -------------------------MILGHCIHGKPEEGIKLFTALVNGTVAGGSISPD-EITFIGVICACVRAELLTEG 344 (523)
Q Consensus 291 -------------------------li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~p~-~~~~~~ll~~~~~~~~~~~a 344 (523)
+...+...|++++|++.|++.++. .|+ ...+..+...|.+.|++++|
T Consensus 442 ~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~-------~P~~~~~~~~LA~~~~~~G~~~~A 514 (1157)
T PRK11447 442 ASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLAL-------DPGSVWLTYRLAQDLRQAGQRSQA 514 (1157)
T ss_pred HhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHh-------CCCCHHHHHHHHHHHHHcCCHHHH
Confidence 233455679999999999999885 354 56777888899999999999
Q ss_pred HHHHHHhhHhcCCCCChHHHHHHHHHHHcCCChHHHHHHHHhCCCCCC--------------------------------
Q 038200 345 RKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDND-------------------------------- 392 (523)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-------------------------------- 392 (523)
...++++.+. .+.++..+..+...+...|+.++|...++.+.....
T Consensus 515 ~~~l~~al~~--~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA 592 (1157)
T PRK11447 515 DALMRRLAQQ--KPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEA 592 (1157)
T ss_pred HHHHHHHHHc--CCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHH
Confidence 9999998873 233444443343444445555555555544431100
Q ss_pred -----CCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCC
Q 038200 393 -----NMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMP 467 (523)
Q Consensus 393 -----~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~ 467 (523)
..+.+...+..+...+...|++++|...++++++.+|+++.++..++.+|...|++++|.+.++...+.. ++.
T Consensus 593 ~~~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~--p~~ 670 (1157)
T PRK11447 593 EALLRQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLPATA--NDS 670 (1157)
T ss_pred HHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccC--CCC
Confidence 0123344556677788999999999999999999999999999999999999999999999999876542 111
Q ss_pred ceeEEEeCCeEEEEecCCCCchHHHHHHHHHHhcccCCc
Q 038200 468 GCRLVDLKEVVEKLKVGHFWRGGMKEEVNKMMECRQSRS 506 (523)
Q Consensus 468 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 506 (523)
.. ....+.......++.+++.+.++++++..|++.
T Consensus 671 ~~----~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~ 705 (1157)
T PRK11447 671 LN----TQRRVALAWAALGDTAAAQRTFNRLIPQAKSQP 705 (1157)
T ss_pred hH----HHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCC
Confidence 11 101111111223678889999999998876654
No 10
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.94 E-value=2.6e-23 Score=191.24 Aligned_cols=406 Identities=12% Similarity=0.116 Sum_probs=211.1
Q ss_pred HHHHHHHHhhccCCchhHHHHhccCCC--C-----------------------------------CcccHHHHHHHHHhC
Q 038200 23 WTINLLKHSADFGSPDYTVLVFKCINN--P-----------------------------------GTFCVNAVIKAYSNS 65 (523)
Q Consensus 23 ~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-----------------------------------~~~~~~~ll~~~~~~ 65 (523)
-...|..-.-+.|++++|++.-..+-. | -..+|..+...+-..
T Consensus 50 ~~l~lah~~yq~gd~~~a~~h~nmv~~~d~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~~q~ae~ysn~aN~~ker 129 (966)
T KOG4626|consen 50 DRLELAHRLYQGGDYKQAEKHCNMVGQEDPTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKNPQGAEAYSNLANILKER 129 (966)
T ss_pred hHHHHHHHHHhccCHHHHHHHHhHhhccCCCcccceeeehhhhhcccchhhhhhhhhhhhhccchHHHHHHHHHHHHHHh
Confidence 355566666778888888876543211 1 112355555555555
Q ss_pred CCchHHHHHHHHHHHCCCCCCcccHHHHHHHHHccCCchHHHHHHHHHHHhCCCCCchH-HHHHHHHHHccCChHHHHHH
Q 038200 66 CVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPV-MNSLINMYGCFGAMDCARNM 144 (523)
Q Consensus 66 ~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~g~~~~A~~~ 144 (523)
|+++.|+..++.+.+.. +-....|..+..++...|+.+.|.+.|.+.++.+ |+... ...+...+...|++.+|...
T Consensus 130 g~~~~al~~y~~aiel~-p~fida~inla~al~~~~~~~~a~~~~~~alqln--P~l~ca~s~lgnLlka~Grl~ea~~c 206 (966)
T KOG4626|consen 130 GQLQDALALYRAAIELK-PKFIDAYINLAAALVTQGDLELAVQCFFEALQLN--PDLYCARSDLGNLLKAEGRLEEAKAC 206 (966)
T ss_pred chHHHHHHHHHHHHhcC-chhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcC--cchhhhhcchhHHHHhhcccchhHHH
Confidence 55555555555555532 2233455555555555555555555555555432 22222 22233333444555555555
Q ss_pred HhhcCC--C-CcchHHHHHHHHHhcCCHHHHHHHHhcCCC--CC-hhHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCC-
Q 038200 145 FVQMSP--R-DLISWNSIVSGHVRSGDMSAAHELFDIMPE--RN-VVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRG- 217 (523)
Q Consensus 145 ~~~~~~--~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~--~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p- 217 (523)
+.+..+ | =.+.|..+...+...|+...|++.|++..+ |+ ...|-.|...|...+.++.|...|.+.... .|
T Consensus 207 YlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~l--rpn 284 (966)
T KOG4626|consen 207 YLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNL--RPN 284 (966)
T ss_pred HHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhc--CCc
Confidence 554432 2 234555555555555555555555555544 21 344555555555555555555555555442 23
Q ss_pred CHHHHHHHHHHHhccccHHHHHHHHHHHHHcCCCCchHHHHHHhhhhhhcCChHHHHHHHHhcCC---CChHHHHHHHHH
Q 038200 218 NDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMAD---RNLVCWNAMILG 294 (523)
Q Consensus 218 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~ 294 (523)
....+..+...|..+|.++.|+..|++.++.. +.-...|+.|..++-..|+..+|.+.|.+... ....+.+.|...
T Consensus 285 ~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~-P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni 363 (966)
T KOG4626|consen 285 HAVAHGNLACIYYEQGLLDLAIDTYKRALELQ-PNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNI 363 (966)
T ss_pred chhhccceEEEEeccccHHHHHHHHHHHHhcC-CCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHH
Confidence 23344455555555555555555555555532 11245555555555555555555555555433 233455555555
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCCCcCCC-HHHHHHHHHHHhhcCcHHHHHHHHHHhhHhcCCCCC-hHHHHHHHHHHH
Q 038200 295 HCIHGKPEEGIKLFTALVNGTVAGGSISPD-EITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPN-FAHYWCMANLYA 372 (523)
Q Consensus 295 ~~~~g~~~~a~~~~~~m~~~~~~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~ 372 (523)
|...|.+++|..+|....+ +.|. ...++.|...|-++|++++|+..|++... ++|+ ...|+.+...|.
T Consensus 364 ~~E~~~~e~A~~ly~~al~-------v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr---I~P~fAda~~NmGnt~k 433 (966)
T KOG4626|consen 364 YREQGKIEEATRLYLKALE-------VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALR---IKPTFADALSNMGNTYK 433 (966)
T ss_pred HHHhccchHHHHHHHHHHh-------hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh---cCchHHHHHHhcchHHH
Confidence 5555555555555555555 3343 33455555555555555555555555542 4444 345555555555
Q ss_pred cCCChHHHHHHHHhCCCCCCCCCch-HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhhHHHHHHHHHhcCCh
Q 038200 373 GAELTEEAEEILRKMPEDNDNMSFE-SIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQW 448 (523)
Q Consensus 373 ~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 448 (523)
..|+.+.|.+.+.+.+. +.|. ...++.|...|...|+..+|+..++.+++++|+.|.+|..++.++.-..+|
T Consensus 434 e~g~v~~A~q~y~rAI~----~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNllh~lq~vcdw 506 (966)
T KOG4626|consen 434 EMGDVSAAIQCYTRAIQ----INPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLLHCLQIVCDW 506 (966)
T ss_pred HhhhHHHHHHHHHHHHh----cCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHHHHHHHHHhcc
Confidence 55555555555555553 3343 344555555555555555555555555555555555555555554444333
No 11
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.93 E-value=7.7e-24 Score=194.72 Aligned_cols=468 Identities=10% Similarity=0.063 Sum_probs=337.5
Q ss_pred HHHHhCCCCCChhHHHHHHHHhhccCCchhHHHHhccCCCCCcccHHHHHHHHHhCCCchHHHHHHHHHHHCC-------
Q 038200 10 HLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNG------- 82 (523)
Q Consensus 10 ~~~~~g~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~------- 82 (523)
.|+..++.-..+.++...++.--.........+-|..-.+.+. .-..|..-.-+.|++++|++-....-+.+
T Consensus 7 ~m~s~~~~~~~~~~~~~~ld~~~~s~~s~~v~qq~~~t~~~~~-~~l~lah~~yq~gd~~~a~~h~nmv~~~d~t~~~~l 85 (966)
T KOG4626|consen 7 NMISQPVFLQLREAFSRKLDQSVSSSGSSSVLQQFNKTHEGSD-DRLELAHRLYQGGDYKQAEKHCNMVGQEDPTNTERL 85 (966)
T ss_pred hHhhcchhhccHHHHHHHhccCcccccchHHHHHhccCCccch-hHHHHHHHHHhccCHHHHHHHHhHhhccCCCcccce
Confidence 3555554423444444444433333333334444443332222 23445555667788888877655433221
Q ss_pred --------------------------CCCCcccHHHHHHHHHccCCchHHHHHHHHHHHhCCCCCchHHHHHHHHHHccC
Q 038200 83 --------------------------FMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFG 136 (523)
Q Consensus 83 --------------------------~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 136 (523)
.+.-..+|..+.+.+-..|++.+|+.+++.+++..+. ....|-.+..++...|
T Consensus 86 lll~ai~~q~~r~d~s~a~~~~a~r~~~q~ae~ysn~aN~~kerg~~~~al~~y~~aiel~p~-fida~inla~al~~~~ 164 (966)
T KOG4626|consen 86 LLLSAIFFQGSRLDKSSAGSLLAIRKNPQGAEAYSNLANILKERGQLQDALALYRAAIELKPK-FIDAYINLAAALVTQG 164 (966)
T ss_pred eeehhhhhcccchhhhhhhhhhhhhccchHHHHHHHHHHHHHHhchHHHHHHHHHHHHhcCch-hhHHHhhHHHHHHhcC
Confidence 0112346777788888888888888888888887544 6778888888888888
Q ss_pred ChHHHHHHHhhcCCCCcch---HHHHHHHHHhcCCHHHHHHHHhcCCC--CC-hhHHHHHHHHHHhcCCchHHHHHHHHH
Q 038200 137 AMDCARNMFVQMSPRDLIS---WNSIVSGHVRSGDMSAAHELFDIMPE--RN-VVSWNIMISGYSKSGNPGCSLKLFREM 210 (523)
Q Consensus 137 ~~~~A~~~~~~~~~~~~~~---~~~ll~~~~~~~~~~~a~~~~~~~~~--~~-~~~~~~li~~~~~~~~~~~a~~~~~~m 210 (523)
+.+.|.+.|.+...-++.. ...+...+...|++++|...+.+..+ |. ...|+.|...+-..|+...|+..|++.
T Consensus 165 ~~~~a~~~~~~alqlnP~l~ca~s~lgnLlka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eA 244 (966)
T KOG4626|consen 165 DLELAVQCFFEALQLNPDLYCARSDLGNLLKAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEA 244 (966)
T ss_pred CCcccHHHHHHHHhcCcchhhhhcchhHHHHhhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHh
Confidence 8888888887776433322 22234445557888888888877654 33 467888888888899999999999888
Q ss_pred HHCCCCCC-HHHHHHHHHHHhccccHHHHHHHHHHHHHcCCCCchHHHHHHhhhhhhcCChHHHHHHHHhcCC--CC-hH
Q 038200 211 MKSGFRGN-DKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMAD--RN-LV 286 (523)
Q Consensus 211 ~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~-~~ 286 (523)
++. .|+ ...|-.|...|...+.++.|...|.+..... +....++..+...|...|.++.|+..|++..+ |+ ..
T Consensus 245 vkl--dP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lr-pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~ 321 (966)
T KOG4626|consen 245 VKL--DPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLR-PNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPD 321 (966)
T ss_pred hcC--CCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcC-CcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchH
Confidence 874 454 4578888888888899999998888887753 23567788888889999999999999998865 43 46
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcCCC-HHHHHHHHHHHhhcCcHHHHHHHHHHhhHhcCCCCC-hHHH
Q 038200 287 CWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPD-EITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPN-FAHY 364 (523)
Q Consensus 287 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~ 364 (523)
.|+.|..++...|++.+|.+.|.+.... .|+ ....+.|...+...|.+++|..+|....+ +.|. ....
T Consensus 322 Ay~NlanALkd~G~V~ea~~cYnkaL~l-------~p~hadam~NLgni~~E~~~~e~A~~ly~~al~---v~p~~aaa~ 391 (966)
T KOG4626|consen 322 AYNNLANALKDKGSVTEAVDCYNKALRL-------CPNHADAMNNLGNIYREQGKIEEATRLYLKALE---VFPEFAAAH 391 (966)
T ss_pred HHhHHHHHHHhccchHHHHHHHHHHHHh-------CCccHHHHHHHHHHHHHhccchHHHHHHHHHHh---hChhhhhhh
Confidence 8999999999999999999999998884 455 66888899999999999999999998876 3343 5678
Q ss_pred HHHHHHHHcCCChHHHHHHHHhCCCCCCCCCch-HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhhHHHHHHHHH
Q 038200 365 WCMANLYAGAELTEEAEEILRKMPEDNDNMSFE-SIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYA 443 (523)
Q Consensus 365 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 443 (523)
+.|...|-..|++++|+..+++.+. +.|+ ...++.+...|...|+...|.+.+.+++.++|.-.+++..|+.+|.
T Consensus 392 nNLa~i~kqqgnl~~Ai~~Ykealr----I~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~k 467 (966)
T KOG4626|consen 392 NNLASIYKQQGNLDDAIMCYKEALR----IKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYK 467 (966)
T ss_pred hhHHHHHHhcccHHHHHHHHHHHHh----cCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhh
Confidence 8899999999999999999999884 6776 6778888888999999999999999999999988888999999999
Q ss_pred hcCChhHHHHHHHHHHhCCCccCCceeEEEeCCeEEEEecCC--CCchHHHHHHHHHHhc
Q 038200 444 VAGQWEDVARVRELMKKRRMGRMPGCRLVDLKEVVEKLKVGH--FWRGGMKEEVNKMMEC 501 (523)
Q Consensus 444 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~ 501 (523)
..|+..+|+.-|++..+.. +..|+- +.+++|+.-.-. ...+..+..|.++.+.
T Consensus 468 DsGni~~AI~sY~~aLklk-PDfpdA----~cNllh~lq~vcdw~D~d~~~~kl~sivrd 522 (966)
T KOG4626|consen 468 DSGNIPEAIQSYRTALKLK-PDFPDA----YCNLLHCLQIVCDWTDYDKRMKKLVSIVRD 522 (966)
T ss_pred ccCCcHHHHHHHHHHHccC-CCCchh----hhHHHHHHHHHhcccchHHHHHHHHHHHHH
Confidence 9999999999999886643 222322 556666443222 4455566666666654
No 12
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.93 E-value=3.4e-21 Score=207.98 Aligned_cols=412 Identities=10% Similarity=-0.024 Sum_probs=327.8
Q ss_pred HHHHhhccCCchhHHHHhccCC---CCCcccHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCcc---cHH---------
Q 038200 27 LLKHSADFGSPDYTVLVFKCIN---NPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSY---TFV--------- 91 (523)
Q Consensus 27 l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~---~~~--------- 91 (523)
+...+...|++++|+..|++.. +.+...+..+...+.+.|++++|+..|++..+.. |+.. .+.
T Consensus 275 ~G~~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~--p~~~~~~~~~~ll~~~~~~ 352 (1157)
T PRK11447 275 QGLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALD--PHSSNRDKWESLLKVNRYW 352 (1157)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCccchhHHHHHHHhhhHH
Confidence 3456778899999999998764 3467788899999999999999999999998753 3321 121
Q ss_pred ---HHHHHHHccCCchHHHHHHHHHHHhCCCCCchHHHHHHHHHHccCChHHHHHHHhhcCC---CCcchHHHHHHHHHh
Q 038200 92 ---SLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSP---RDLISWNSIVSGHVR 165 (523)
Q Consensus 92 ---~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~ll~~~~~ 165 (523)
.....+.+.|++++|...++++++..+. +...+..+..++...|++++|++.|++... .+...+..+...|.
T Consensus 353 ~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~-~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~- 430 (1157)
T PRK11447 353 LLIQQGDAALKANNLAQAERLYQQARQVDNT-DSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYR- 430 (1157)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-
Confidence 2234567889999999999999998643 677888899999999999999999999873 34556666666664
Q ss_pred cCCHHHHHHHHhcCCCCC------------hhHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccc
Q 038200 166 SGDMSAAHELFDIMPERN------------VVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSA 233 (523)
Q Consensus 166 ~~~~~~a~~~~~~~~~~~------------~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~ 233 (523)
.++.++|+..++.+.... ...+..+...+...|++++|.+.|++.++.. +-+...+..+...+.+.|
T Consensus 431 ~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~~G 509 (1157)
T PRK11447 431 QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDLRQAG 509 (1157)
T ss_pred hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcC
Confidence 567899999998876421 2235566778889999999999999999863 335667788899999999
Q ss_pred cHHHHHHHHHHHHHcCCCCchHHHHHHhhhhhhcCChHHHHHHHHhcCCC----Ch---------HHHHHHHHHHHhcCC
Q 038200 234 RFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADR----NL---------VCWNAMILGHCIHGK 300 (523)
Q Consensus 234 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~---------~~~~~li~~~~~~g~ 300 (523)
++++|...++++.+... .+...+..+...+...++.++|+..++.+... +. ..+..+...+...|+
T Consensus 510 ~~~~A~~~l~~al~~~P-~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~ 588 (1157)
T PRK11447 510 QRSQADALMRRLAQQKP-NDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGK 588 (1157)
T ss_pred CHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCC
Confidence 99999999999987642 34555555666678889999999999988642 11 112345667889999
Q ss_pred hHHHHHHHHHHHhCCCCCCCcCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhHhcCCCCChHHHHHHHHHHHcCCChHHH
Q 038200 301 PEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEA 380 (523)
Q Consensus 301 ~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 380 (523)
.++|..+++. .+++...+..+...+.+.|++++|+..|+++.+. -+.++..+..++..|...|++++|
T Consensus 589 ~~eA~~~l~~----------~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~--~P~~~~a~~~la~~~~~~g~~~eA 656 (1157)
T PRK11447 589 EAEAEALLRQ----------QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTR--EPGNADARLGLIEVDIAQGDLAAA 656 (1157)
T ss_pred HHHHHHHHHh----------CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHH
Confidence 9999999872 2455667778888999999999999999999983 455688999999999999999999
Q ss_pred HHHHHhCCCCCCCCCc-hHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCh------hhHHHHHHHHHhcCChhHHHH
Q 038200 381 EEILRKMPEDNDNMSF-ESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDF------SRYQFLLNVYAVAGQWEDVAR 453 (523)
Q Consensus 381 ~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~------~~~~~l~~~~~~~g~~~~A~~ 453 (523)
++.++.+.+. .| +...+..+..++...|++++|.++++++.+..|+++ .++..++.++...|++++|+.
T Consensus 657 ~~~l~~ll~~----~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~ 732 (1157)
T PRK11447 657 RAQLAKLPAT----ANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALE 732 (1157)
T ss_pred HHHHHHHhcc----CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHH
Confidence 9999998853 34 455666677788899999999999999998766543 366778999999999999999
Q ss_pred HHHHHHh
Q 038200 454 VRELMKK 460 (523)
Q Consensus 454 ~~~~m~~ 460 (523)
.|++...
T Consensus 733 ~y~~Al~ 739 (1157)
T PRK11447 733 TYKDAMV 739 (1157)
T ss_pred HHHHHHh
Confidence 9998864
No 13
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.92 E-value=6.2e-21 Score=193.50 Aligned_cols=256 Identities=11% Similarity=0.045 Sum_probs=210.0
Q ss_pred cCCchHHHHHHHHHHHCC-CCC-CHHHHHHHHHHHhccccHHHHHHHHHHHHHcCCCCchHHHHHHhhhhhhcCChHHHH
Q 038200 197 SGNPGCSLKLFREMMKSG-FRG-NDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQ 274 (523)
Q Consensus 197 ~~~~~~a~~~~~~m~~~~-~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 274 (523)
.+++++|.+.|+...+.+ ..| ....+..+..++...|++++|...+++..+.. +.....|..+...+...|++++|+
T Consensus 307 ~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~ 385 (615)
T TIGR00990 307 DESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD-PRVTQSYIKRASMNLELGDPDKAE 385 (615)
T ss_pred hhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHCCCHHHHH
Confidence 468999999999998865 233 44577888888899999999999999999864 224668888999999999999999
Q ss_pred HHHHhcCC---CChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcCCCHHHHHHHHHHHhhcCcHHHHHHHHHHh
Q 038200 275 RVFDSMAD---RNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQM 351 (523)
Q Consensus 275 ~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 351 (523)
..|+++.+ .+...|..+...+...|++++|...|++.+... +.+...+..+..++.+.|++++|+..|++.
T Consensus 386 ~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~------P~~~~~~~~la~~~~~~g~~~eA~~~~~~a 459 (615)
T TIGR00990 386 EDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD------PDFIFSHIQLGVTQYKEGSIASSMATFRRC 459 (615)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC------ccCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 99998754 357789999999999999999999999999854 234667778888999999999999999999
Q ss_pred hHhcCCCCChHHHHHHHHHHHcCCChHHHHHHHHhCCCCCCCCCc---hHH-HHHHHHHHHHhcCCHHHHHHHHHHHhhc
Q 038200 352 IDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSF---ESI-MWVSLLSLCRFQGAVAMVERLAKSFVDM 427 (523)
Q Consensus 352 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 427 (523)
.+ ..+.++..+..+..++...|++++|.+.|++..+......+ +.. .++.....+...|++++|..+++++.++
T Consensus 460 l~--~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l 537 (615)
T TIGR00990 460 KK--NFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALII 537 (615)
T ss_pred HH--hCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 87 34556888999999999999999999999998754221111 111 1222222334469999999999999999
Q ss_pred CCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 038200 428 DPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKR 461 (523)
Q Consensus 428 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 461 (523)
+|++..++..++.++.+.|++++|+..|++..+.
T Consensus 538 ~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 538 DPECDIAVATMAQLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 9998889999999999999999999999998664
No 14
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.91 E-value=1.6e-19 Score=186.50 Aligned_cols=168 Identities=11% Similarity=-0.027 Sum_probs=106.1
Q ss_pred HhHHHHHHHHhCCCCCChhHHHHHHHHhhccCCchhHHHHhccCCC--CCcccHHHHHHHHHhCCCchHHHHHHHHHHHC
Q 038200 4 LLQIQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINN--PGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKN 81 (523)
Q Consensus 4 ~~~i~~~~~~~g~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~ 81 (523)
|...+...++. +|.++.++..|...|.+.|++++|+..+++..+ |+-..|..++..+ +++++|..+++++...
T Consensus 63 A~~~l~~Al~~--dP~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP~n~~~~~~La~i---~~~~kA~~~ye~l~~~ 137 (987)
T PRK09782 63 AIREFEYIHQQ--VPDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKRHPGDARLERSLAAI---PVEVKSVTTVEELLAQ 137 (987)
T ss_pred HHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHh---ccChhHHHHHHHHHHh
Confidence 34455555544 466799999999999999999999999988753 3222333333222 7888888888888765
Q ss_pred CCCCC-cccHHHH----------------------------------------HHHHHccCCchHHHHHHHHHHHhCCCC
Q 038200 82 GFMPN-SYTFVSL----------------------------------------FGSCAKTGCVERGGMCHGLALKNGVDF 120 (523)
Q Consensus 82 ~~~p~-~~~~~~l----------------------------------------l~~~~~~~~~~~a~~~~~~~~~~~~~~ 120 (523)
. |+ ...+..+ ...|.+.+++++|+.++..+.+.++.
T Consensus 138 ~--P~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~~pl- 214 (987)
T PRK09782 138 Q--KACDAVPTLRCRSEVGQNALRLAQLPVARAQLNDATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNEARQQNTL- 214 (987)
T ss_pred C--CCChhHHHHHHHHhhccchhhhhhHHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcCCC-
Confidence 3 22 2222222 34444555566666666666655433
Q ss_pred CchHHHHHHHHHHc-cCChHHHHHHHhhcCCCCcchHHHHHHHHHhcCCHHHHHHHHhcCC
Q 038200 121 ELPVMNSLINMYGC-FGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMP 180 (523)
Q Consensus 121 ~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 180 (523)
+..-...|..+|.. .++ +.+..+++...+.+...+..+...|.+.|+.++|.++++++.
T Consensus 215 ~~~~~~~L~~ay~q~l~~-~~a~al~~~~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~ 274 (987)
T PRK09782 215 SAAERRQWFDVLLAGQLD-DRLLALQSQGIFTDPQSRITYATALAYRGEKARLQHYLIENK 274 (987)
T ss_pred CHHHHHHHHHHHHHhhCH-HHHHHHhchhcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 34444455555555 244 555555554334466677788888899999999999998885
No 15
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.90 E-value=8.7e-21 Score=182.93 Aligned_cols=291 Identities=10% Similarity=0.037 Sum_probs=197.2
Q ss_pred cCCHHHHHHHHhcCCC--C-ChhHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCC---HHHHHHHHHHHhccccHHHHH
Q 038200 166 SGDMSAAHELFDIMPE--R-NVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGN---DKTMASVLTACGRSARFNEGR 239 (523)
Q Consensus 166 ~~~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~---~~~~~~ll~~~~~~~~~~~a~ 239 (523)
.|++++|...|.++.+ | +..++..+...+...|++++|..+++.+...+..++ ...+..+...+...|++++|.
T Consensus 48 ~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~ 127 (389)
T PRK11788 48 NEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLDRAE 127 (389)
T ss_pred cCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHHHHH
Confidence 3444444444444432 1 233455555555555555555555555554321111 133455555555566666666
Q ss_pred HHHHHHHHcCCCCchHHHHHHhhhhhhcCChHHHHHHHHhcCCCC--------hHHHHHHHHHHHhcCChHHHHHHHHHH
Q 038200 240 SVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRN--------LVCWNAMILGHCIHGKPEEGIKLFTAL 311 (523)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--------~~~~~~li~~~~~~g~~~~a~~~~~~m 311 (523)
.+|+++.+.. +.+..++..++..+.+.|++++|.+.++.+.+.+ ...+..+...+...|++++|...|+++
T Consensus 128 ~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 206 (389)
T PRK11788 128 ELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKA 206 (389)
T ss_pred HHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 6666555542 2344555556666666666666666665553311 123456777788899999999999998
Q ss_pred HhCCCCCCCcCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhHhcCCCCChHHHHHHHHHHHcCCChHHHHHHHHhCCCCC
Q 038200 312 VNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDN 391 (523)
Q Consensus 312 ~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 391 (523)
.+.. +.+...+..+...+.+.|++++|.++++++.+. .......++..++.+|...|++++|.+.++++.+
T Consensus 207 l~~~------p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~-- 277 (389)
T PRK11788 207 LAAD------PQCVRASILLGDLALAQGDYAAAIEALERVEEQ-DPEYLSEVLPKLMECYQALGDEAEGLEFLRRALE-- 277 (389)
T ss_pred HhHC------cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-ChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--
Confidence 8743 223557777888899999999999999999874 2222246678899999999999999999999885
Q ss_pred CCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhhHHHHHHHHHh---cCChhHHHHHHHHHHhCCCccCCc
Q 038200 392 DNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAV---AGQWEDVARVRELMKKRRMGRMPG 468 (523)
Q Consensus 392 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~---~g~~~~A~~~~~~m~~~~~~~~~~ 468 (523)
..|+...+..++..+...|++++|..+++++.+..|+++ .+..++..+.. .|+.+++..++++|.+++++++|+
T Consensus 278 --~~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~-~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 278 --EYPGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLR-GFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred --hCCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHH-HHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCC
Confidence 356666667888889999999999999999999999765 56666655553 568999999999999999999997
Q ss_pred e
Q 038200 469 C 469 (523)
Q Consensus 469 ~ 469 (523)
.
T Consensus 355 ~ 355 (389)
T PRK11788 355 Y 355 (389)
T ss_pred E
Confidence 5
No 16
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.89 E-value=6.9e-19 Score=181.80 Aligned_cols=406 Identities=12% Similarity=-0.019 Sum_probs=283.1
Q ss_pred CCChhHHHHHHHHhhccCCchhHHHHhccCCC---CCcccHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCcccHHHHH
Q 038200 18 FNNSFWTINLLKHSADFGSPDYTVLVFKCINN---PGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLF 94 (523)
Q Consensus 18 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll 94 (523)
|.++....-.+.+....|+.++|+++|....+ .+...+..+...+.+.|++++|.++|++..+.. +.+...+..+.
T Consensus 12 ~~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la 90 (765)
T PRK10049 12 ALSNNQIADWLQIALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLI 90 (765)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 36777888888899999999999999988653 334458889999999999999999999988863 44556677888
Q ss_pred HHHHccCCchHHHHHHHHHHHhCCCCCchHHHHHHHHHHccCChHHHHHHHhhcCC--C-CcchHHHHHHHHHhcCCHHH
Q 038200 95 GSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSP--R-DLISWNSIVSGHVRSGDMSA 171 (523)
Q Consensus 95 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~ll~~~~~~~~~~~ 171 (523)
..+...|++++|...++.+++..+. +.. +..+..++...|+.++|+..++++.. | +...+..+...+...+..+.
T Consensus 91 ~~l~~~g~~~eA~~~l~~~l~~~P~-~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~ 168 (765)
T PRK10049 91 LTLADAGQYDEALVKAKQLVSGAPD-KAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAP 168 (765)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCC-CHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHH
Confidence 8888999999999999999987433 556 88888999999999999999999873 3 55566777788888899999
Q ss_pred HHHHHhcCCC-CCh------hHHHHHHHHHHh-----cCCc---hHHHHHHHHHHHC-CCCCCHH-HHH----HHHHHHh
Q 038200 172 AHELFDIMPE-RNV------VSWNIMISGYSK-----SGNP---GCSLKLFREMMKS-GFRGNDK-TMA----SVLTACG 230 (523)
Q Consensus 172 a~~~~~~~~~-~~~------~~~~~li~~~~~-----~~~~---~~a~~~~~~m~~~-~~~p~~~-~~~----~ll~~~~ 230 (523)
|+..++.... |+. .....++..... .+++ ++|++.++.+.+. ...|+.. .+. ..+..+.
T Consensus 169 Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll 248 (765)
T PRK10049 169 ALGAIDDANLTPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALL 248 (765)
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHH
Confidence 9999988776 221 012222222221 1223 6788888888754 1223221 111 1133445
Q ss_pred ccccHHHHHHHHHHHHHcCCC-CchHHHHHHhhhhhhcCChHHHHHHHHhcCCCC-------hHHHHHHHHHHHhcCChH
Q 038200 231 RSARFNEGRSVHGYTVRTSLK-PNIILDTALIDLYSKCQKVEVAQRVFDSMADRN-------LVCWNAMILGHCIHGKPE 302 (523)
Q Consensus 231 ~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-------~~~~~~li~~~~~~g~~~ 302 (523)
..|++++|...|+.+.+.+.+ |+. ....+..+|...|++++|+..|+++.+.+ ......+..++...|+++
T Consensus 249 ~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~ 327 (765)
T PRK10049 249 ARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYP 327 (765)
T ss_pred HhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHH
Confidence 668888999999888877532 322 22225668888888999988888875422 234555666778888888
Q ss_pred HHHHHHHHHHhCCCC------CCCcCCCH---HHHHHHHHHHhhcCcHHHHHHHHHHhhHhcCCCCChHHHHHHHHHHHc
Q 038200 303 EGIKLFTALVNGTVA------GGSISPDE---ITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAG 373 (523)
Q Consensus 303 ~a~~~~~~m~~~~~~------~~~~~p~~---~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 373 (523)
+|..+++.+...... .....|+. ..+..+...+...|+.++|++.++++.. ..+.+...+..+...+..
T Consensus 328 eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~--~~P~n~~l~~~lA~l~~~ 405 (765)
T PRK10049 328 GALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAY--NAPGNQGLRIDYASVLQA 405 (765)
T ss_pred HHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHh
Confidence 888888888764200 00011231 2344555667777777788777777776 345556777777777777
Q ss_pred CCChHHHHHHHHhCCCCCCCCCch-HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChh
Q 038200 374 AELTEEAEEILRKMPEDNDNMSFE-SIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFS 433 (523)
Q Consensus 374 ~g~~~~A~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 433 (523)
.|++++|++.++++.+ ..|+ ...+......+...|++++|+..++.+++..|+++.
T Consensus 406 ~g~~~~A~~~l~~al~----l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~~ 462 (765)
T PRK10049 406 RGWPRAAENELKKAEV----LEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQDPG 462 (765)
T ss_pred cCCHHHHHHHHHHHHh----hCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHH
Confidence 7777777777777775 3444 445555555667777777777777777777777663
No 17
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.89 E-value=1.2e-20 Score=181.90 Aligned_cols=290 Identities=12% Similarity=0.112 Sum_probs=140.4
Q ss_pred HHHHHhCCCchHHHHHHHHHHHCCCCCCcccHHHHHHHHHccCCchHHHHHHHHHHHhCCCCC---chHHHHHHHHHHcc
Q 038200 59 IKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFE---LPVMNSLINMYGCF 135 (523)
Q Consensus 59 l~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~ 135 (523)
...+...|++++|+..|+++.+.+ +.+..++..+...+...|++++|..+++.+...+..++ ..++..+...|.+.
T Consensus 42 g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~ 120 (389)
T PRK11788 42 GLNFLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKA 120 (389)
T ss_pred HHHHHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHC
Confidence 334556677777777777777653 33444666677777777777777777777665432111 13455555666666
Q ss_pred CChHHHHHHHhhcCCCCcchHHHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHhcCCchHHHHHHHHHHHCCC
Q 038200 136 GAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGF 215 (523)
Q Consensus 136 g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~ 215 (523)
|+++.|..+|+++.+.+. .+..+++.++..+.+.|++++|.+.++.+.+.+.
T Consensus 121 g~~~~A~~~~~~~l~~~~----------------------------~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~ 172 (389)
T PRK11788 121 GLLDRAEELFLQLVDEGD----------------------------FAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGG 172 (389)
T ss_pred CCHHHHHHHHHHHHcCCc----------------------------chHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcC
Confidence 666666666655542100 2233344444444444444444444444444321
Q ss_pred CCCH----HHHHHHHHHHhccccHHHHHHHHHHHHHcCCCCchHHHHHHhhhhhhcCChHHHHHHHHhcCC--CC--hHH
Q 038200 216 RGND----KTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMAD--RN--LVC 287 (523)
Q Consensus 216 ~p~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~--~~~ 287 (523)
.++. ..+..+...+...|++++|...++++.+.. +.+...+..+...|.+.|++++|.++|+++.+ |+ ..+
T Consensus 173 ~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 251 (389)
T PRK11788 173 DSLRVEIAHFYCELAQQALARGDLDAARALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEV 251 (389)
T ss_pred CcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHH
Confidence 1111 122333344444444444444444444432 11233444444444445555555555444432 11 123
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhHhcCCCCChHHHHHH
Q 038200 288 WNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCM 367 (523)
Q Consensus 288 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 367 (523)
++.++.+|...|++++|...++++... .|+...+..++..+.+.|++++|..+++++.+. .|+...+..+
T Consensus 252 ~~~l~~~~~~~g~~~~A~~~l~~~~~~-------~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~---~P~~~~~~~l 321 (389)
T PRK11788 252 LPKLMECYQALGDEAEGLEFLRRALEE-------YPGADLLLALAQLLEEQEGPEAAQALLREQLRR---HPSLRGFHRL 321 (389)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh-------CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh---CcCHHHHHHH
Confidence 444445555555555555555555442 244334444444555555555555555554432 3444444444
Q ss_pred HHHHHc---CCChHHHHHHHHhCC
Q 038200 368 ANLYAG---AELTEEAEEILRKMP 388 (523)
Q Consensus 368 ~~~~~~---~g~~~~A~~~~~~~~ 388 (523)
+..+.. .|+.+++..+++++.
T Consensus 322 ~~~~~~~~~~g~~~~a~~~~~~~~ 345 (389)
T PRK11788 322 LDYHLAEAEEGRAKESLLLLRDLV 345 (389)
T ss_pred HHHhhhccCCccchhHHHHHHHHH
Confidence 444332 234455555555444
No 18
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.88 E-value=3.8e-19 Score=183.69 Aligned_cols=394 Identities=9% Similarity=-0.020 Sum_probs=302.0
Q ss_pred HHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCcccHHHHHHHHHccCCchHHHHHHHHHHHhCCCCCchHHHHHHHHHHc
Q 038200 55 VNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGC 134 (523)
Q Consensus 55 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 134 (523)
-.-.+......|+.++|++++....... +.+...+..+..++...|++++|..+++..++..+. +...+..+..++..
T Consensus 18 ~~d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~la~~l~~ 95 (765)
T PRK10049 18 IADWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQ-NDDYQRGLILTLAD 95 (765)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHH
Confidence 3455677888999999999999998632 445556899999999999999999999999987533 67778889999999
Q ss_pred cCChHHHHHHHhhcC---CCCcchHHHHHHHHHhcCCHHHHHHHHhcCCC--C-ChhHHHHHHHHHHhcCCchHHHHHHH
Q 038200 135 FGAMDCARNMFVQMS---PRDLISWNSIVSGHVRSGDMSAAHELFDIMPE--R-NVVSWNIMISGYSKSGNPGCSLKLFR 208 (523)
Q Consensus 135 ~g~~~~A~~~~~~~~---~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~ 208 (523)
.|++++|...+++.. +.+.. +..+..++...|+.++|+..++++.+ | +...+..+..++...+..+.|+..++
T Consensus 96 ~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~Al~~l~ 174 (765)
T PRK10049 96 AGQYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPALGAID 174 (765)
T ss_pred CCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHH
Confidence 999999999999986 23555 88888899999999999999999876 4 45666778888889999999999887
Q ss_pred HHHHCCCCCCH------HHHHHHHHHHh-----ccccH---HHHHHHHHHHHHc-CCCCchH-HH----HHHhhhhhhcC
Q 038200 209 EMMKSGFRGND------KTMASVLTACG-----RSARF---NEGRSVHGYTVRT-SLKPNII-LD----TALIDLYSKCQ 268 (523)
Q Consensus 209 ~m~~~~~~p~~------~~~~~ll~~~~-----~~~~~---~~a~~~~~~~~~~-~~~~~~~-~~----~~l~~~~~~~~ 268 (523)
.... .|+. .....++.... ..+++ ++|...++.+.+. ...|+.. .+ ...+.++...|
T Consensus 175 ~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g 251 (765)
T PRK10049 175 DANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARD 251 (765)
T ss_pred hCCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhh
Confidence 6654 2321 01122222222 22334 7788888888864 2223221 11 11133446779
Q ss_pred ChHHHHHHHHhcCCCC---h-HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcC--CCHHHHHHHHHHHhhcCcHH
Q 038200 269 KVEVAQRVFDSMADRN---L-VCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSIS--PDEITFIGVICACVRAELLT 342 (523)
Q Consensus 269 ~~~~a~~~~~~~~~~~---~-~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~--p~~~~~~~ll~~~~~~~~~~ 342 (523)
++++|+..|+++.+.+ + .....+..+|...|++++|+..|+++..... .. +.......+..++.+.|+++
T Consensus 252 ~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p----~~~~~~~~~~~~L~~a~~~~g~~~ 327 (765)
T PRK10049 252 RYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHPE----TIADLSDEELADLFYSLLESENYP 327 (765)
T ss_pred hHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCC----CCCCCChHHHHHHHHHHHhcccHH
Confidence 9999999999997632 2 1223357789999999999999999886430 11 11345666777889999999
Q ss_pred HHHHHHHHhhHhcC----------CCCC---hHHHHHHHHHHHcCCChHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHH
Q 038200 343 EGRKYFRQMIDFYK----------IKPN---FAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCR 409 (523)
Q Consensus 343 ~a~~~~~~~~~~~~----------~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 409 (523)
+|..+++.+.+... -.|+ ...+..+...+...|++++|+++++++... .+.+...+..+...+.
T Consensus 328 eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~---~P~n~~l~~~lA~l~~ 404 (765)
T PRK10049 328 GALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYN---APGNQGLRIDYASVLQ 404 (765)
T ss_pred HHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHH
Confidence 99999999987310 0122 234567788899999999999999999864 3445778888888999
Q ss_pred hcCCHHHHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 038200 410 FQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKR 461 (523)
Q Consensus 410 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 461 (523)
..|+.++|+..++++++.+|+++..+..++..+.+.|++++|..+++++.+.
T Consensus 405 ~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~ 456 (765)
T PRK10049 405 ARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAR 456 (765)
T ss_pred hcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999775
No 19
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.88 E-value=6e-19 Score=178.37 Aligned_cols=355 Identities=8% Similarity=-0.087 Sum_probs=178.4
Q ss_pred ccCCchhHHHHhccCCC------CCcccHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCcccHHHHHHHHHccCCchHH
Q 038200 33 DFGSPDYTVLVFKCINN------PGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERG 106 (523)
Q Consensus 33 ~~g~~~~A~~~~~~~~~------~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a 106 (523)
+..+++.---.|...++ .+..-...++..+.+.|+++.|..+++...... +-+...+..++.++...|++++|
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~-p~~~~~l~~l~~~~l~~g~~~~A 95 (656)
T PRK15174 17 KQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTA-KNGRDLLRRWVISPLASSQPDAV 95 (656)
T ss_pred hhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhC-CCchhHHHHHhhhHhhcCCHHHH
Confidence 45556555555555442 122334455666777777777777777777653 22333445555555667777777
Q ss_pred HHHHHHHHHhCCCCCchHHHHHHHHHHccCChHHHHHHHhhcCC---CCcchHHHHHHHHHhcCCHHHHHHHHhcCCC--
Q 038200 107 GMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSP---RDLISWNSIVSGHVRSGDMSAAHELFDIMPE-- 181 (523)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-- 181 (523)
...++.+.+..+. +...+..+...+...|++++|...+++... .+...+..+...+...|++++|...++.+..
T Consensus 96 ~~~l~~~l~~~P~-~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~ 174 (656)
T PRK15174 96 LQVVNKLLAVNVC-QPEDVLLVASVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEV 174 (656)
T ss_pred HHHHHHHHHhCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC
Confidence 7777777776533 556666666777777777777777666542 2344555555555555555555555554422
Q ss_pred CC-hhHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHcCCCCchHHHHHH
Q 038200 182 RN-VVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTAL 260 (523)
Q Consensus 182 ~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 260 (523)
|+ ...+..+ ..+...|++++|...++.+.+....++...+..+..++...|++++|...++.+.+.. +.+...+..+
T Consensus 175 P~~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~L 252 (656)
T PRK15174 175 PPRGDMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSL 252 (656)
T ss_pred CCCHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHH
Confidence 21 2222222 2244555555555555555444222233333333444555555555555555555443 2233444444
Q ss_pred hhhhhhcCChHHHHHHHHhcCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcCCCHHHHHHHHHHHhhcCc
Q 038200 261 IDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAEL 340 (523)
Q Consensus 261 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~ll~~~~~~~~ 340 (523)
..++...|++++|. .+|...|++..... +.+...+..+...+...|+
T Consensus 253 g~~l~~~G~~~eA~---------------------------~~A~~~~~~Al~l~------P~~~~a~~~lg~~l~~~g~ 299 (656)
T PRK15174 253 GLAYYQSGRSREAK---------------------------LQAAEHWRHALQFN------SDNVRIVTLYADALIRTGQ 299 (656)
T ss_pred HHHHHHcCCchhhH---------------------------HHHHHHHHHHHhhC------CCCHHHHHHHHHHHHHCCC
Confidence 44444445444310 01455555554421 1123344444455555555
Q ss_pred HHHHHHHHHHhhHhcCCCCChHHHHHHHHHHHcCCChHHHHHHHHhCCCCCCCCCchHH-HHHHHHHHHHhcCCHHHHHH
Q 038200 341 LTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESI-MWVSLLSLCRFQGAVAMVER 419 (523)
Q Consensus 341 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~a~~ 419 (523)
+++|...++++.+. -+.+...+..+..+|.+.|++++|.+.++++... .|+.. .+..+..++...|+.++|..
T Consensus 300 ~~eA~~~l~~al~l--~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~----~P~~~~~~~~~a~al~~~G~~deA~~ 373 (656)
T PRK15174 300 NEKAIPLLQQSLAT--HPDLPYVRAMYARALRQVGQYTAASDEFVQLARE----KGVTSKWNRYAAAALLQAGKTSEAES 373 (656)
T ss_pred HHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh----CccchHHHHHHHHHHHHCCCHHHHHH
Confidence 55555555555442 1222334444455555555555555555554431 22221 12222334445555555555
Q ss_pred HHHHHhhcCCC
Q 038200 420 LAKSFVDMDPQ 430 (523)
Q Consensus 420 ~~~~~~~~~p~ 430 (523)
.++++.+..|+
T Consensus 374 ~l~~al~~~P~ 384 (656)
T PRK15174 374 VFEHYIQARAS 384 (656)
T ss_pred HHHHHHHhChh
Confidence 55555555443
No 20
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.87 E-value=1.8e-18 Score=174.91 Aligned_cols=318 Identities=10% Similarity=-0.031 Sum_probs=252.8
Q ss_pred HHHHHHhhccCCchhHHHHhccCC---CCCcccHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCcccHHHHHHHHHccC
Q 038200 25 INLLKHSADFGSPDYTVLVFKCIN---NPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTG 101 (523)
Q Consensus 25 ~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~ 101 (523)
...+..+.+.|++++|..+++.+. +.+...+..++.+....|+++.|+..|+++.+.. +.+...+..+...+.+.|
T Consensus 46 ~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~-P~~~~a~~~la~~l~~~g 124 (656)
T PRK15174 46 ILFAIACLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVN-VCQPEDVLLVASVLLKSK 124 (656)
T ss_pred HHHHHHHHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcC
Confidence 344556678899999999998764 3345566677788888999999999999999864 445567888888899999
Q ss_pred CchHHHHHHHHHHHhCCCCCchHHHHHHHHHHccCChHHHHHHHhhcC--CC-CcchHHHHHHHHHhcCCHHHHHHHHhc
Q 038200 102 CVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMS--PR-DLISWNSIVSGHVRSGDMSAAHELFDI 178 (523)
Q Consensus 102 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~ 178 (523)
++++|...++.+.+..+. +...+..+..++...|++++|...++.+. .| +...+..+ ..+...|++++|...++.
T Consensus 125 ~~~~Ai~~l~~Al~l~P~-~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~~~-~~l~~~g~~~eA~~~~~~ 202 (656)
T PRK15174 125 QYATVADLAEQAWLAFSG-NSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGDMIATC-LSFLNKSRLPEDHDLARA 202 (656)
T ss_pred CHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHHHHH-HHHHHcCCHHHHHHHHHH
Confidence 999999999999987533 67788899999999999999999998774 33 33344333 457889999999999998
Q ss_pred CCCC----ChhHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHH----HHHHHHHHHHcCC
Q 038200 179 MPER----NVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNE----GRSVHGYTVRTSL 250 (523)
Q Consensus 179 ~~~~----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~----a~~~~~~~~~~~~ 250 (523)
+.+. +...+..+..++...|++++|...+++..+.. +.+...+..+...+...|++++ |...++.+.+..
T Consensus 203 ~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~- 280 (656)
T PRK15174 203 LLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFN- 280 (656)
T ss_pred HHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhC-
Confidence 7652 33445556778899999999999999999864 4466778889999999999986 789999998864
Q ss_pred CCchHHHHHHhhhhhhcCChHHHHHHHHhcCC--C-ChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcCCCHHH
Q 038200 251 KPNIILDTALIDLYSKCQKVEVAQRVFDSMAD--R-NLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEIT 327 (523)
Q Consensus 251 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~p~~~~ 327 (523)
+.+..++..+...+...|++++|+..+++..+ | +...+..+..++...|++++|...|+++.... |+...
T Consensus 281 P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~-------P~~~~ 353 (656)
T PRK15174 281 SDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREK-------GVTSK 353 (656)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-------ccchH
Confidence 33677888889999999999999998888754 3 45667778888888999999999998888743 55433
Q ss_pred -HHHHHHHHhhcCcHHHHHHHHHHhhHh
Q 038200 328 -FIGVICACVRAELLTEGRKYFRQMIDF 354 (523)
Q Consensus 328 -~~~ll~~~~~~~~~~~a~~~~~~~~~~ 354 (523)
+..+..++...|+.++|...|+++.+.
T Consensus 354 ~~~~~a~al~~~G~~deA~~~l~~al~~ 381 (656)
T PRK15174 354 WNRYAAAALLQAGKTSEAESVFEHYIQA 381 (656)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 344556778889999999999888764
No 21
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.87 E-value=8.9e-18 Score=173.75 Aligned_cols=478 Identities=10% Similarity=-0.021 Sum_probs=341.0
Q ss_pred hHhHHHHHHHHhCCCCCChhHHHHHHHH--------hhccCCchhHHHHhccCCCC--CcccHHH-HHHHHHhCCCchHH
Q 038200 3 QLLQIQAHLITSGLFFNNSFWTINLLKH--------SADFGSPDYTVLVFKCINNP--GTFCVNA-VIKAYSNSCVPDQG 71 (523)
Q Consensus 3 ~~~~i~~~~~~~g~~~~~~~~~~~l~~~--------~~~~g~~~~A~~~~~~~~~~--~~~~~~~-ll~~~~~~~~~~~a 71 (523)
.+-.+.+.+++.. |.+..++..+... |.+.+....+++ .+...| +...... +.+.|.+.|++++|
T Consensus 126 kA~~~ye~l~~~~--P~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~--lr~~~~~~~~~vL~L~~~rlY~~l~dw~~A 201 (987)
T PRK09782 126 KSVTTVEELLAQQ--KACDAVPTLRCRSEVGQNALRLAQLPVARAQLN--DATFAASPEGKTLRTDLLQRAIYLKQWSQA 201 (987)
T ss_pred hHHHHHHHHHHhC--CCChhHHHHHHHHhhccchhhhhhHHHHHHHHH--HhhhCCCCCcHHHHHHHHHHHHHHhCHHHH
Confidence 3456777777775 4577787777776 777766666666 333333 3443344 48899999999999
Q ss_pred HHHHHHHHHCCCCCCcccHHHHHHHHHc-cCCchHHHHHHHHHHHhCCCCCchHHHHHHHHHHccCChHHHHHHHhhcCC
Q 038200 72 VVFYLQMIKNGFMPNSYTFVSLFGSCAK-TGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSP 150 (523)
Q Consensus 72 ~~~~~~m~~~~~~p~~~~~~~ll~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 150 (523)
+++++++.+.+ +.+..-...+..++.+ .++ +.+..+++. .++-+...+..++..|.+.|+.++|.++++++..
T Consensus 202 i~lL~~L~k~~-pl~~~~~~~L~~ay~q~l~~-~~a~al~~~----~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~ 275 (987)
T PRK09782 202 DTLYNEARQQN-TLSAAERRQWFDVLLAGQLD-DRLLALQSQ----GIFTDPQSRITYATALAYRGEKARLQHYLIENKP 275 (987)
T ss_pred HHHHHHHHhcC-CCCHHHHHHHHHHHHHhhCH-HHHHHHhch----hcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcc
Confidence 99999999986 3444446667677776 366 777777543 3345788899999999999999999999999862
Q ss_pred -----CCcchHHHH------------------------------HHHH--------------------------------
Q 038200 151 -----RDLISWNSI------------------------------VSGH-------------------------------- 163 (523)
Q Consensus 151 -----~~~~~~~~l------------------------------l~~~-------------------------------- 163 (523)
|+..+|--. +..+
T Consensus 276 ~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 355 (987)
T PRK09782 276 LFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVAT 355 (987)
T ss_pred cccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhcccc
Confidence 111111111 1122
Q ss_pred -------------------------------HhcCCHHHHHHHHhcCCC--C----ChhHHHHHHHHHHhcCC---chHH
Q 038200 164 -------------------------------VRSGDMSAAHELFDIMPE--R----NVVSWNIMISGYSKSGN---PGCS 203 (523)
Q Consensus 164 -------------------------------~~~~~~~~a~~~~~~~~~--~----~~~~~~~li~~~~~~~~---~~~a 203 (523)
.+.|+.++|.++|+.... + +...-+-++..|.+.+. ..++
T Consensus 356 ~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~ 435 (987)
T PRK09782 356 RNKAEALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKV 435 (987)
T ss_pred CchhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHH
Confidence 244555555555555443 1 11223345555555544 2222
Q ss_pred HHH----------------------HHHHHHC-CC-CC--CHHHHHHHHHHHhccccHHHHHHHHHHHHHcCCCCchHHH
Q 038200 204 LKL----------------------FREMMKS-GF-RG--NDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILD 257 (523)
Q Consensus 204 ~~~----------------------~~~m~~~-~~-~p--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 257 (523)
..+ +...... +. ++ +...|..+..++.. ++.++|...+.+..... |+....
T Consensus 436 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~--Pd~~~~ 512 (987)
T PRK09782 436 AILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQ--PDAWQH 512 (987)
T ss_pred HHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhC--CchHHH
Confidence 222 1111111 11 23 56677777777776 88889999888887754 554444
Q ss_pred HHHhhhhhhcCChHHHHHHHHhcCC--CChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcCCCH-HHHHHHHHH
Q 038200 258 TALIDLYSKCQKVEVAQRVFDSMAD--RNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDE-ITFIGVICA 334 (523)
Q Consensus 258 ~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~p~~-~~~~~ll~~ 334 (523)
..+...+...|++++|...|+++.. ++...+..+..++...|+.++|...+++..... |+. ..+..+...
T Consensus 513 L~lA~al~~~Gr~eeAi~~~rka~~~~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~-------P~~~~l~~~La~~ 585 (987)
T PRK09782 513 RAVAYQAYQVEDYATALAAWQKISLHDMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG-------LGDNALYWWLHAQ 585 (987)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHhccCCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-------CccHHHHHHHHHH
Confidence 4455566789999999999998754 445567777888999999999999999998854 443 344444455
Q ss_pred HhhcCcHHHHHHHHHHhhHhcCCCCChHHHHHHHHHHHcCCChHHHHHHHHhCCCCCCCCCc-hHHHHHHHHHHHHhcCC
Q 038200 335 CVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSF-ESIMWVSLLSLCRFQGA 413 (523)
Q Consensus 335 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~ 413 (523)
+...|++++|...+++..+ ..|+...|..+..++.+.|++++|++.+++..+. .| +...+..+..++...|+
T Consensus 586 l~~~Gr~~eAl~~~~~AL~---l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l----~Pd~~~a~~nLG~aL~~~G~ 658 (987)
T PRK09782 586 RYIPGQPELALNDLTRSLN---IAPSANAYVARATIYRQRHNVPAAVSDLRAALEL----EPNNSNYQAALGYALWDSGD 658 (987)
T ss_pred HHhCCCHHHHHHHHHHHHH---hCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHCCC
Confidence 5667999999999999987 3567889999999999999999999999999964 45 46677777778999999
Q ss_pred HHHHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCCceeEEEeCCeEEEEecCCCCchHHHH
Q 038200 414 VAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLKEVVEKLKVGHFWRGGMKE 493 (523)
Q Consensus 414 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 493 (523)
.++|...++++++..|+++.++..++.+|...|++++|...+++..+.. |+. ..+......+.....+...+.+
T Consensus 659 ~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~----P~~--a~i~~~~g~~~~~~~~~~~a~~ 732 (987)
T PRK09782 659 IAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDI----DNQ--ALITPLTPEQNQQRFNFRRLHE 732 (987)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC----CCC--chhhhhhhHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999997643 322 3344466666666667888999
Q ss_pred HHHHHHhcccCCccccccccc
Q 038200 494 EVNKMMECRQSRSLATVSKQL 514 (523)
Q Consensus 494 ~l~~~~~~~~~~~~~~~~~~~ 514 (523)
.+++....+|+.. +-...|-
T Consensus 733 ~~~r~~~~~~~~~-a~~~~g~ 752 (987)
T PRK09782 733 EVGRRWTFSFDSS-IGLRSGA 752 (987)
T ss_pred HHHHHhhcCccch-hccccch
Confidence 9999999999888 4443333
No 22
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.86 E-value=4.4e-17 Score=165.24 Aligned_cols=434 Identities=9% Similarity=-0.001 Sum_probs=315.3
Q ss_pred CChhHHHHHHHHhhccCCchhHHHHhccCCC--CCcc-cHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCccc-HHHH-
Q 038200 19 NNSFWTINLLKHSADFGSPDYTVLVFKCINN--PGTF-CVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYT-FVSL- 93 (523)
Q Consensus 19 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~-~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~-~~~l- 93 (523)
..+.+.-.-+-...+.|+++.|+..|++..+ |+.. ....++..+...|+.++|+..+++.. .|+... +..+
T Consensus 32 ~~~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~----~p~n~~~~~lla 107 (822)
T PRK14574 32 AMADTQYDSLIIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQ----SSMNISSRGLAS 107 (822)
T ss_pred cchhHHHHHHHHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhc----cCCCCCHHHHHH
Confidence 3444444444466789999999999998764 4321 23388888999999999999999988 343332 3333
Q ss_pred -HHHHHccCCchHHHHHHHHHHHhCCCCCchHHHHHHHHHHccCChHHHHHHHhhcCCCCcchHHHHHHHHH--hcCCHH
Q 038200 94 -FGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHV--RSGDMS 170 (523)
Q Consensus 94 -l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~--~~~~~~ 170 (523)
...+...|++++|.++++.+.+..+. +...+..++..+...++.++|++.++++.+.+......+..++. ..++..
T Consensus 108 lA~ly~~~gdyd~Aiely~kaL~~dP~-n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~l~layL~~~~~~~~ 186 (822)
T PRK14574 108 AARAYRNEKRWDQALALWQSSLKKDPT-NPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNYMTLSYLNRATDRNY 186 (822)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHHHHHHHHHHhcchHH
Confidence 45677889999999999999998755 67888888999999999999999999998654433333444444 456666
Q ss_pred HHHHHHhcCCC--C-ChhHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHHHH------HHHHHHH-----hcccc--
Q 038200 171 AAHELFDIMPE--R-NVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTM------ASVLTAC-----GRSAR-- 234 (523)
Q Consensus 171 ~a~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~------~~ll~~~-----~~~~~-- 234 (523)
+|++.++++.+ | +...+..+..+..+.|-...|+++..+-.+. +.+...-. ...++.- ....+
T Consensus 187 ~AL~~~ekll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~-f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~ 265 (822)
T PRK14574 187 DALQASSEAVRLAPTSEEVLKNHLEILQRNRIVEPALRLAKENPNL-VSAEHYRQLERDAAAEQVRMAVLPTRSETERFD 265 (822)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccc-cCHHHHHHHHHHHHHHHHhhcccccccchhhHH
Confidence 69999999875 4 5677788889999999999998777654322 12221111 1111110 01122
Q ss_pred -HHHHHHHHHHHHHc-CCCCc-hHH-HH---HHhhhhhhcCChHHHHHHHHhcCCC----ChHHHHHHHHHHHhcCChHH
Q 038200 235 -FNEGRSVHGYTVRT-SLKPN-IIL-DT---ALIDLYSKCQKVEVAQRVFDSMADR----NLVCWNAMILGHCIHGKPEE 303 (523)
Q Consensus 235 -~~~a~~~~~~~~~~-~~~~~-~~~-~~---~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~li~~~~~~g~~~~ 303 (523)
.+.|..-++.+... +..|. ... .. -.+-++...++..++++.|+.+..+ ...+-..+..+|...+++++
T Consensus 266 ~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~k 345 (822)
T PRK14574 266 IADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEK 345 (822)
T ss_pred HHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHH
Confidence 34455555555542 11132 122 22 2345677889999999999999853 33567788999999999999
Q ss_pred HHHHHHHHHhCCCCCCCcCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhHhcC----------CCCC---hHHHHHHHHH
Q 038200 304 GIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYK----------IKPN---FAHYWCMANL 370 (523)
Q Consensus 304 a~~~~~~m~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~----------~~~~---~~~~~~l~~~ 370 (523)
|..+|+.+...........++......|..++..++++++|..+++.+.+... -.|+ ...+..++..
T Consensus 346 A~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~ 425 (822)
T PRK14574 346 AAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQS 425 (822)
T ss_pred HHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHH
Confidence 99999999764311001123444467889999999999999999999987311 0122 2344557888
Q ss_pred HHcCCChHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChhH
Q 038200 371 YAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWED 450 (523)
Q Consensus 371 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 450 (523)
+...|++.+|++.++++... -+-|......+...+...|....|+..++.+..++|++..+....+.++...|+|++
T Consensus 426 ~~~~gdl~~Ae~~le~l~~~---aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~ 502 (822)
T PRK14574 426 LVALNDLPTAQKKLEDLSST---APANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMALQEWHQ 502 (822)
T ss_pred HHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHH
Confidence 89999999999999999864 344778888888899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhC
Q 038200 451 VARVRELMKKR 461 (523)
Q Consensus 451 A~~~~~~m~~~ 461 (523)
|..+.+.+...
T Consensus 503 A~~~~~~l~~~ 513 (822)
T PRK14574 503 MELLTDDVISR 513 (822)
T ss_pred HHHHHHHHHhh
Confidence 99999888665
No 23
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.86 E-value=2.5e-18 Score=174.58 Aligned_cols=427 Identities=11% Similarity=0.016 Sum_probs=298.0
Q ss_pred HHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCcccHHHHHHHHHccCCchHHHHHHHHHHHhCCCCCchHHHHHHHHHHc
Q 038200 55 VNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGC 134 (523)
Q Consensus 55 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 134 (523)
+......+.+.|++++|+..|++.++. .|+...|..+..++.+.|++++|+..++..++..+. +...+..+..+|..
T Consensus 130 ~k~~G~~~~~~~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~-~~~a~~~~a~a~~~ 206 (615)
T TIGR00990 130 LKEKGNKAYRNKDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALELDPD-YSKALNRRANAYDG 206 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHH
Confidence 445667788899999999999998874 678888889999999999999999999999887543 67788889999999
Q ss_pred cCChHHHHHHHhhcCCC---CcchHHHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHhcCCchHHHHHHHHHH
Q 038200 135 FGAMDCARNMFVQMSPR---DLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMM 211 (523)
Q Consensus 135 ~g~~~~A~~~~~~~~~~---~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 211 (523)
.|++++|+..|...... +......++..+........+...++.-+. +...+..+.. |...........-+....
T Consensus 207 lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 284 (615)
T TIGR00990 207 LGKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPE-NLPSVTFVGN-YLQSFRPKPRPAGLEDSN 284 (615)
T ss_pred cCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCC-CCCCHHHHHH-HHHHccCCcchhhhhccc
Confidence 99999999887665421 111112222222222222344444443322 2223333322 222222222222222111
Q ss_pred HCCCCCCH-HHHHHHHH---HHhccccHHHHHHHHHHHHHcC-CCC-chHHHHHHhhhhhhcCChHHHHHHHHhcCC--C
Q 038200 212 KSGFRGND-KTMASVLT---ACGRSARFNEGRSVHGYTVRTS-LKP-NIILDTALIDLYSKCQKVEVAQRVFDSMAD--R 283 (523)
Q Consensus 212 ~~~~~p~~-~~~~~ll~---~~~~~~~~~~a~~~~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~ 283 (523)
+ ..+.. ..+..+.. -....+++++|...|+...+.+ ..| ....+..+...+...|++++|+..|++..+ |
T Consensus 285 ~--~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P 362 (615)
T TIGR00990 285 E--LDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDP 362 (615)
T ss_pred c--cccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Confidence 1 11111 11111111 1134578999999999999865 223 456788888899999999999999999865 3
Q ss_pred -ChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhHhcCCCCChH
Q 038200 284 -NLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFA 362 (523)
Q Consensus 284 -~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 362 (523)
+...|..+...+...|++++|...|+++.+.. +.+...+..+...+...|++++|...|++..+ ..+.+..
T Consensus 363 ~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~------p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~--l~P~~~~ 434 (615)
T TIGR00990 363 RVTQSYIKRASMNLELGDPDKAEEDFDKALKLN------SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSID--LDPDFIF 434 (615)
T ss_pred CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCccCHH
Confidence 35688889999999999999999999998853 33467888899999999999999999999988 3444677
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhhHHH-----
Q 038200 363 HYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQF----- 437 (523)
Q Consensus 363 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~----- 437 (523)
.+..+..++.+.|++++|+..+++.... .+.+...++.+...+...|++++|...+++++++.|.+...+..
T Consensus 435 ~~~~la~~~~~~g~~~eA~~~~~~al~~---~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~ 511 (615)
T TIGR00990 435 SHIQLGVTQYKEGSIASSMATFRRCKKN---FPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLI 511 (615)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHH
Confidence 8888999999999999999999998853 33457788888889999999999999999999998864333221
Q ss_pred --HHHHHHhcCChhHHHHHHHHHHhCCCccCCceeEEEeCCeEEEEecCCCCchHHHHHHHHHHhcccCC
Q 038200 438 --LLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLKEVVEKLKVGHFWRGGMKEEVNKMMECRQSR 505 (523)
Q Consensus 438 --l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 505 (523)
.+..+...|++++|..++++..+.. |++.. ....+.......++.++++..+++.++..+..
T Consensus 512 ~~a~~~~~~~~~~~eA~~~~~kAl~l~----p~~~~--a~~~la~~~~~~g~~~eAi~~~e~A~~l~~~~ 575 (615)
T TIGR00990 512 NKALALFQWKQDFIEAENLCEKALIID----PECDI--AVATMAQLLLQQGDVDEALKLFERAAELARTE 575 (615)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhcC----CCcHH--HHHHHHHHHHHccCHHHHHHHHHHHHHHhccH
Confidence 2223445799999999999886643 32211 11111222223368899999999998887653
No 24
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.83 E-value=3.3e-17 Score=159.18 Aligned_cols=431 Identities=13% Similarity=0.075 Sum_probs=324.5
Q ss_pred CCChhHHHHHHHHhhccCCchhHHHHhccCCCCC------cccHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCcc--c
Q 038200 18 FNNSFWTINLLKHSADFGSPDYTVLVFKCINNPG------TFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSY--T 89 (523)
Q Consensus 18 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~------~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~--~ 89 (523)
|.||.+.+.|.+.|--.|+++.++.+...+...+ ..+|-.+.++|-..|++++|...|.+..+. .||.+ .
T Consensus 267 ~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~--~~d~~~l~ 344 (1018)
T KOG2002|consen 267 NENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKA--DNDNFVLP 344 (1018)
T ss_pred CCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHcc--CCCCcccc
Confidence 4789999999999999999999999887765322 335778899999999999999999888775 35543 4
Q ss_pred HHHHHHHHHccCCchHHHHHHHHHHHhCCCCCchHHHHHHHHHHccC----ChHHHHHHHhhcCCC---CcchHHHHHHH
Q 038200 90 FVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFG----AMDCARNMFVQMSPR---DLISWNSIVSG 162 (523)
Q Consensus 90 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g----~~~~A~~~~~~~~~~---~~~~~~~ll~~ 162 (523)
+--+...+...|+++.+...|+.+.+..+. +..+.-.|...|...+ ..+.|..++.+...+ |...|-.+...
T Consensus 345 ~~GlgQm~i~~~dle~s~~~fEkv~k~~p~-~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql 423 (1018)
T KOG2002|consen 345 LVGLGQMYIKRGDLEESKFCFEKVLKQLPN-NYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQL 423 (1018)
T ss_pred ccchhHHHHHhchHHHHHHHHHHHHHhCcc-hHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 556778888999999999999999887433 6777777888887765 567788888777654 45555555554
Q ss_pred HHhcCCHHHHHHHHhcCC--------CCChhHHHHHHHHHHhcCCchHHHHHHHHHHHC---CCCCCH------HHHHHH
Q 038200 163 HVRSGDMSAAHELFDIMP--------ERNVVSWNIMISGYSKSGNPGCSLKLFREMMKS---GFRGND------KTMASV 225 (523)
Q Consensus 163 ~~~~~~~~~a~~~~~~~~--------~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~---~~~p~~------~~~~~l 225 (523)
+-. ++.-.++..|.... ..-+...|.+...+...|++++|...|...... ...+|. .+--.+
T Consensus 424 ~e~-~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNl 502 (1018)
T KOG2002|consen 424 LEQ-TDPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNL 502 (1018)
T ss_pred HHh-cChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHH
Confidence 433 33333344443332 356778899999999999999999999888665 122232 233445
Q ss_pred HHHHhccccHHHHHHHHHHHHHcCCCCchHHHHHHhhhhhhcCChHHHHHHHHhcCC---CChHHHHHHHHHHHhcCChH
Q 038200 226 LTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMAD---RNLVCWNAMILGHCIHGKPE 302 (523)
Q Consensus 226 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~ 302 (523)
..++-..++.+.|.+.|..+.+.. +.-+..|--++.+....++..+|...+..... .++..+..+...+.....+.
T Consensus 503 arl~E~l~~~~~A~e~Yk~Ilkeh-p~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~ 581 (1018)
T KOG2002|consen 503 ARLLEELHDTEVAEEMYKSILKEH-PGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWK 581 (1018)
T ss_pred HHHHHhhhhhhHHHHHHHHHHHHC-chhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhc
Confidence 666777889999999999998864 22234444444344445778889888888754 57778888888899999999
Q ss_pred HHHHHHHHHHhCCCCCCCcCCCHHHHHHHHHHHhh------------cCcHHHHHHHHHHhhHhcCCCCChHHHHHHHHH
Q 038200 303 EGIKLFTALVNGTVAGGSISPDEITFIGVICACVR------------AELLTEGRKYFRQMIDFYKIKPNFAHYWCMANL 370 (523)
Q Consensus 303 ~a~~~~~~m~~~~~~~~~~~p~~~~~~~ll~~~~~------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 370 (523)
.|.+-|+...+.-. ..+|..+...|...|.+ .+..+.|+++|.++.+ ..+-|...-+.+.-+
T Consensus 582 ~a~k~f~~i~~~~~----~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~--~dpkN~yAANGIgiV 655 (1018)
T KOG2002|consen 582 PAKKKFETILKKTS----TKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLR--NDPKNMYAANGIGIV 655 (1018)
T ss_pred ccccHHHHHHhhhc----cCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHh--cCcchhhhccchhhh
Confidence 99888877766541 34677777777776543 2456788888888887 455677888889999
Q ss_pred HHcCCChHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHhhc-C-CCChhhHHHHHHHHHhcCCh
Q 038200 371 YAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDM-D-PQDFSRYQFLLNVYAVAGQW 448 (523)
Q Consensus 371 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~-p~~~~~~~~l~~~~~~~g~~ 448 (523)
++..|++.+|..+|.++.+. ......+|..+..+|...|++..|.++|+...+. . .+++.+...|++++.+.|++
T Consensus 656 LA~kg~~~~A~dIFsqVrEa---~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~ 732 (1018)
T KOG2002|consen 656 LAEKGRFSEARDIFSQVREA---TSDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKL 732 (1018)
T ss_pred hhhccCchHHHHHHHHHHHH---HhhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhH
Confidence 99999999999999999864 2334568889999999999999999999998873 3 35888999999999999999
Q ss_pred hHHHHHHHHHHhCC
Q 038200 449 EDVARVRELMKKRR 462 (523)
Q Consensus 449 ~~A~~~~~~m~~~~ 462 (523)
.+|.+.........
T Consensus 733 ~eak~~ll~a~~~~ 746 (1018)
T KOG2002|consen 733 QEAKEALLKARHLA 746 (1018)
T ss_pred HHHHHHHHHHHHhC
Confidence 99999988876653
No 25
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.81 E-value=2.9e-15 Score=152.12 Aligned_cols=420 Identities=12% Similarity=0.033 Sum_probs=310.0
Q ss_pred hHhHHHHHHHHhCCCCCCh-hHHHHHHHHhhccCCchhHHHHhccCCCCCccc-HHHH--HHHHHhCCCchHHHHHHHHH
Q 038200 3 QLLQIQAHLITSGLFFNNS-FWTINLLKHSADFGSPDYTVLVFKCINNPGTFC-VNAV--IKAYSNSCVPDQGVVFYLQM 78 (523)
Q Consensus 3 ~~~~i~~~~~~~g~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~l--l~~~~~~~~~~~a~~~~~~m 78 (523)
.|...+....+.. |.++ .++ .++..+...|+.++|+..+++...|+... +..+ ...+...|++++|+++|+++
T Consensus 52 ~Al~~L~qaL~~~--P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd~Aiely~ka 128 (822)
T PRK14574 52 PVLDYLQEESKAG--PLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWDQALALWQSS 128 (822)
T ss_pred HHHHHHHHHHhhC--ccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3455555555543 3343 444 88889999999999999999987664444 3344 45778889999999999999
Q ss_pred HHCCCCCCcccHHHHHHHHHccCCchHHHHHHHHHHHhCCCCCchHHHHHHHHHHccCChHHHHHHHhhcC--CC-Ccch
Q 038200 79 IKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMS--PR-DLIS 155 (523)
Q Consensus 79 ~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~-~~~~ 155 (523)
.+.. +-+...+..++..+...++.++|++.++.+... .|+...+..++..+...++..+|++.++++. .| +...
T Consensus 129 L~~d-P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~~P~n~e~ 205 (822)
T PRK14574 129 LKKD-PTNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASSEAVRLAPTSEEV 205 (822)
T ss_pred HhhC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHHHHHHhCCCCHHH
Confidence 9874 444567777788889999999999999999876 4455555555555555667766999999997 33 6677
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhcCCCC-ChhHH--------HHHHHHH---H--hcCC---chHHHHHHHHHHHC-CCCC
Q 038200 156 WNSIVSGHVRSGDMSAAHELFDIMPER-NVVSW--------NIMISGY---S--KSGN---PGCSLKLFREMMKS-GFRG 217 (523)
Q Consensus 156 ~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~--------~~li~~~---~--~~~~---~~~a~~~~~~m~~~-~~~p 217 (523)
+..+..++.+.|-...|.++..+-+.- +...+ ..+++.- . ..++ .+.|+.-++.+... +..|
T Consensus 206 ~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p 285 (822)
T PRK14574 206 LKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDP 285 (822)
T ss_pred HHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCC
Confidence 788889999999999999999887641 11111 1111110 0 1122 34566666666552 2223
Q ss_pred CH-H----HHHHHHHHHhccccHHHHHHHHHHHHHcCCCCchHHHHHHhhhhhhcCChHHHHHHHHhcCCC---------
Q 038200 218 ND-K----TMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADR--------- 283 (523)
Q Consensus 218 ~~-~----~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--------- 283 (523)
.. . ...-.+-++...|+..++++.|+.+...+.+....+-..+.++|...+++++|+.+|..+...
T Consensus 286 ~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~ 365 (822)
T PRK14574 286 EAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSD 365 (822)
T ss_pred ccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCc
Confidence 22 2 222345567889999999999999998886656678889999999999999999999998442
Q ss_pred ChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCC--------CCCCcCCCHH-HHHHHHHHHhhcCcHHHHHHHHHHhhHh
Q 038200 284 NLVCWNAMILGHCIHGKPEEGIKLFTALVNGTV--------AGGSISPDEI-TFIGVICACVRAELLTEGRKYFRQMIDF 354 (523)
Q Consensus 284 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~--------~~~~~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 354 (523)
+......|.-+|...+++++|..+++++.+... ......||-. .+..++..+...|++.+|++.++++..
T Consensus 366 ~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~- 444 (822)
T PRK14574 366 DLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSS- 444 (822)
T ss_pred chHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-
Confidence 233357788999999999999999999988431 0011223322 344556778899999999999999987
Q ss_pred cCCCCChHHHHHHHHHHHcCCChHHHHHHHHhCCCCCCCCCch-HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChh
Q 038200 355 YKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFE-SIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFS 433 (523)
Q Consensus 355 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 433 (523)
.-+-|......+.+.+...|.+.+|.+.++.+.. ..|+ ..+....+.++...|++++|..+.+.+.+..|+++.
T Consensus 445 -~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~----l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~Pe~~~ 519 (822)
T PRK14574 445 -TAPANQNLRIALASIYLARDLPRKAEQELKAVES----LAPRSLILERAQAETAMALQEWHQMELLTDDVISRSPEDIP 519 (822)
T ss_pred -hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhh----hCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhCCCchh
Confidence 5666899999999999999999999999988774 3554 556666777888999999999999999999998874
Q ss_pred h
Q 038200 434 R 434 (523)
Q Consensus 434 ~ 434 (523)
+
T Consensus 520 ~ 520 (822)
T PRK14574 520 S 520 (822)
T ss_pred H
Confidence 3
No 26
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.80 E-value=2.2e-16 Score=140.90 Aligned_cols=412 Identities=11% Similarity=0.076 Sum_probs=259.8
Q ss_pred CChhHHHHHHHHhhccCCchhHHHHhccCCC----CCccc-HHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCc--c---
Q 038200 19 NNSFWTINLLKHSADFGSPDYTVLVFKCINN----PGTFC-VNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNS--Y--- 88 (523)
Q Consensus 19 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~-~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~--~--- 88 (523)
.+..+...|.+-|.......+|+..++-+.+ ||.-. --.+...+.+.+++.+|++.|+-.+.. .|+. .
T Consensus 199 ltfsvl~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldq--vpsink~~ri 276 (840)
T KOG2003|consen 199 LTFSVLFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQ--VPSINKDMRI 276 (840)
T ss_pred chHHHHHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhh--ccccchhhHH
Confidence 4455566666677777777888877776543 22111 112334455566666666666555443 2221 1
Q ss_pred -cHHHHHHHHHccCCchHHHHHHHHHHHhCCCCCchHHHHHHHHHHccCChHHHHHHHhhcCC----------------C
Q 038200 89 -TFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSP----------------R 151 (523)
Q Consensus 89 -~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----------------~ 151 (523)
..+.+.-.+.+.|+++.|...|+...+. .|+..+--.|+-++..-|+-++..+.|.+|.. |
T Consensus 277 kil~nigvtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp 354 (840)
T KOG2003|consen 277 KILNNIGVTFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDP 354 (840)
T ss_pred HHHhhcCeeEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCc
Confidence 1222223345566666666666666554 34444444444445555666666666666531 1
Q ss_pred CcchHHHHHH-----H----------------------------------------------------------HHhcCC
Q 038200 152 DLISWNSIVS-----G----------------------------------------------------------HVRSGD 168 (523)
Q Consensus 152 ~~~~~~~ll~-----~----------------------------------------------------------~~~~~~ 168 (523)
+....+.-|. - |.+.|+
T Consensus 355 ~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d 434 (840)
T KOG2003|consen 355 DDNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGD 434 (840)
T ss_pred chHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccC
Confidence 1111111111 0 345555
Q ss_pred HHHHHHHHhcCCCCChhHHHH----H-HHHHHh-cCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHH
Q 038200 169 MSAAHELFDIMPERNVVSWNI----M-ISGYSK-SGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVH 242 (523)
Q Consensus 169 ~~~a~~~~~~~~~~~~~~~~~----l-i~~~~~-~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 242 (523)
++.|++++.-..+.|..+-.+ | +--|.+ ..++..|..+-+..+... .-+......-.+.....|++++|.+.|
T Consensus 435 ~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd~dka~~~y 513 (840)
T KOG2003|consen 435 IEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGDLDKAAEFY 513 (840)
T ss_pred HHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCcHHHHHHHH
Confidence 555555555544433222111 1 111111 223444444443333221 122222222233344568899999999
Q ss_pred HHHHHcCCCCchHHHHHHhhhhhhcCChHHHHHHHHhcCC---CChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC
Q 038200 243 GYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMAD---RNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGG 319 (523)
Q Consensus 243 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~ 319 (523)
.+.+...-......|| +.-.+...|++++|++.|-++.. .+......+...|-...+...|++++.+....
T Consensus 514 keal~ndasc~ealfn-iglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~~sl----- 587 (840)
T KOG2003|consen 514 KEALNNDASCTEALFN-IGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQANSL----- 587 (840)
T ss_pred HHHHcCchHHHHHHHH-hcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-----
Confidence 9888765433334444 34456778999999999887643 56777778888898899999999999877663
Q ss_pred CcCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhHhcCCCCChHHHHHHHHHHHcCCChHHHHHHHHhCCCCCCCCCchHH
Q 038200 320 SISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESI 399 (523)
Q Consensus 320 ~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 399 (523)
++.|+..+..|...|-+.|+-.+|.+.+-.--. -++.+..+..-|..-|....-+++|+.+|++..- +.|+..
T Consensus 588 -ip~dp~ilskl~dlydqegdksqafq~~ydsyr--yfp~nie~iewl~ayyidtqf~ekai~y~ekaal----iqp~~~ 660 (840)
T KOG2003|consen 588 -IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYR--YFPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL----IQPNQS 660 (840)
T ss_pred -CCCCHHHHHHHHHHhhcccchhhhhhhhhhccc--ccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh----cCccHH
Confidence 455678888899999999999999887766554 4667888888899999999999999999998763 789999
Q ss_pred HHHHHHHHH-HhcCCHHHHHHHHHHHhhcCCCChhhHHHHHHHHHhcCCh
Q 038200 400 MWVSLLSLC-RFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQW 448 (523)
Q Consensus 400 ~~~~l~~~~-~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 448 (523)
-|..++..| ++.|++.+|...++.....-|.+..++..|++.+...|..
T Consensus 661 kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedldclkflvri~~dlgl~ 710 (840)
T KOG2003|consen 661 KWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLGLK 710 (840)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHHHHHhccccch
Confidence 999888765 6789999999999999999999999999999998888753
No 27
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.78 E-value=4.2e-16 Score=151.68 Aligned_cols=446 Identities=13% Similarity=0.055 Sum_probs=261.9
Q ss_pred CCcccHHHHHHHHHhCCCchHHHHHHHHHHHCCC--CCCcccHHHHHHHHHccCCchHHHHHHHHHHHhCCCCCchHHHH
Q 038200 50 PGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGF--MPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNS 127 (523)
Q Consensus 50 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~--~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 127 (523)
.|++..+.|...|.-.|++..+.++...+...-. ..-..+|--+.+++-..|++++|...|....+....-.+..+-.
T Consensus 268 ~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~G 347 (1018)
T KOG2002|consen 268 ENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVG 347 (1018)
T ss_pred CCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccc
Confidence 3455555556666666666666666666554320 01122355556666666666666666666555432211333345
Q ss_pred HHHHHHccCChHHHHHHHhhcCC---CCcchHHHHHHHHHhcC----CHHHHHHHHhcCCC---CChhHHHHHHHHHHhc
Q 038200 128 LINMYGCFGAMDCARNMFVQMSP---RDLISWNSIVSGHVRSG----DMSAAHELFDIMPE---RNVVSWNIMISGYSKS 197 (523)
Q Consensus 128 l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~ll~~~~~~~----~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~ 197 (523)
|..+|++.|+++.+...|+.+.+ .+..+...+...|...+ ..+.|..++.+..+ .|...|-.+...+-..
T Consensus 348 lgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~~ 427 (1018)
T KOG2002|consen 348 LGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQT 427 (1018)
T ss_pred hhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHhc
Confidence 55666666666666666666542 23344444444444443 34455555555444 2444555555444443
Q ss_pred CCchHHHHHHHHH----HHCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHc---CCCCc------hHHHHHHhhhh
Q 038200 198 GNPGCSLKLFREM----MKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRT---SLKPN------IILDTALIDLY 264 (523)
Q Consensus 198 ~~~~~a~~~~~~m----~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---~~~~~------~~~~~~l~~~~ 264 (523)
. +..++.+|... ...+..+.....+.+...+...|+++.|...|...... ...++ +.+-..+...+
T Consensus 428 d-~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~ 506 (1018)
T KOG2002|consen 428 D-PWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLL 506 (1018)
T ss_pred C-hHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHH
Confidence 3 33335544433 33444456666666666666777777777666665544 11111 11222344555
Q ss_pred hhcCChHHHHHHHHhcCC--CCh-HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcCCCHHHHHHHHHHHhhcCcH
Q 038200 265 SKCQKVEVAQRVFDSMAD--RNL-VCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELL 341 (523)
Q Consensus 265 ~~~~~~~~a~~~~~~~~~--~~~-~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~ 341 (523)
...++.+.|.+.|..+.+ |+- ..|-.++......+...+|...++...... ..++..+..+...+.....+
T Consensus 507 E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d------~~np~arsl~G~~~l~k~~~ 580 (1018)
T KOG2002|consen 507 EELHDTEVAEEMYKSILKEHPGYIDAYLRLGCMARDKNNLYEASLLLKDALNID------SSNPNARSLLGNLHLKKSEW 580 (1018)
T ss_pred HhhhhhhHHHHHHHHHHHHCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcc------cCCcHHHHHHHHHHHhhhhh
Confidence 555666677777766655 222 233333333334466777777777776643 23333444444456666666
Q ss_pred HHHHHHHHHhhHhcCCCCChHHHHHHHHHHH------------cCCChHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHH
Q 038200 342 TEGRKYFRQMIDFYKIKPNFAHYWCMANLYA------------GAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCR 409 (523)
Q Consensus 342 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~------------~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 409 (523)
..|.+-|+.+.+.....+|+...-.|.+.|. ..+..++|+++|.+++.. .+.+...-+.+...++
T Consensus 581 ~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~---dpkN~yAANGIgiVLA 657 (1018)
T KOG2002|consen 581 KPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRN---DPKNMYAANGIGIVLA 657 (1018)
T ss_pred cccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhc---Ccchhhhccchhhhhh
Confidence 6677766666554333456666666666553 234567899999988853 3446666677777788
Q ss_pred hcCCHHHHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCC-ceeEEEeCCeEEEEecCCCCc
Q 038200 410 FQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMP-GCRLVDLKEVVEKLKVGHFWR 488 (523)
Q Consensus 410 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 488 (523)
..|++..|..+|.++.+...+.+.+|..++.+|..+|+|..|+++|+...++-.+.+. +. +......+... +..
T Consensus 658 ~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~v----l~~Lara~y~~-~~~ 732 (1018)
T KOG2002|consen 658 EKGRFSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEV----LHYLARAWYEA-GKL 732 (1018)
T ss_pred hccCchHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHH----HHHHHHHHHHh-hhH
Confidence 8999999999999999866667789999999999999999999999988776543333 21 12222222222 368
Q ss_pred hHHHHHHHHHHhcccCCccccc
Q 038200 489 GGMKEEVNKMMECRQSRSLATV 510 (523)
Q Consensus 489 ~~~~~~l~~~~~~~~~~~~~~~ 510 (523)
.++.+.+...+...|+++.-.+
T Consensus 733 ~eak~~ll~a~~~~p~~~~v~F 754 (1018)
T KOG2002|consen 733 QEAKEALLKARHLAPSNTSVKF 754 (1018)
T ss_pred HHHHHHHHHHHHhCCccchHHh
Confidence 8899999999999999876443
No 28
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.75 E-value=3.8e-14 Score=125.95 Aligned_cols=394 Identities=14% Similarity=0.149 Sum_probs=191.9
Q ss_pred chHhHHHHHHHHhCCCCCChhHHHHHHHHhh--ccCCchhH-HHHhccCC-----------------------CCCcccH
Q 038200 2 KQLLQIQAHLITSGLFFNNSFWTINLLKHSA--DFGSPDYT-VLVFKCIN-----------------------NPGTFCV 55 (523)
Q Consensus 2 ~~~~~i~~~~~~~g~~~~~~~~~~~l~~~~~--~~g~~~~A-~~~~~~~~-----------------------~~~~~~~ 55 (523)
+.+--+++.|...|++ ..+.+...|+..-+ ...++.-| ++.|-.|. +.+..+|
T Consensus 132 KDs~ilY~~m~~e~~~-vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G~vAdL~~E~~PKT~et~ 210 (625)
T KOG4422|consen 132 KDSCILYERMRSENVD-VSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSGAVADLLFETLPKTDETV 210 (625)
T ss_pred chhHHHHHHHHhcCCC-CCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccccccccccccHHHHHHhhcCCCchhH
Confidence 3445678889999998 88888888876432 33333222 22333332 2334455
Q ss_pred HHHHHHHHhCCCchHHHHHHHHHHHCCCCCCcccHHHHHHHHHccCCchHHHHHHHHHHHhCCCCCchHHHHHHHHHHcc
Q 038200 56 NAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCF 135 (523)
Q Consensus 56 ~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 135 (523)
..||.++|+.-..+.|.+++++......+.+..+||.+|.+-+-. ...+++.+|....+.||..|+|+++.+..+.
T Consensus 211 s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~----~~K~Lv~EMisqkm~Pnl~TfNalL~c~akf 286 (625)
T KOG4422|consen 211 SIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYS----VGKKLVAEMISQKMTPNLFTFNALLSCAAKF 286 (625)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhh----ccHHHHHHHHHhhcCCchHhHHHHHHHHHHh
Confidence 566666666666666666666655555555666666665554322 1255555565555566666666666655555
Q ss_pred CChHHHHHHHhhcCCCCcchHHHHHHHHHhcCCHHHHHHHHhcCC----CCChhHHHHHHHHHHhcCCchH-HHHHHHHH
Q 038200 136 GAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMP----ERNVVSWNIMISGYSKSGNPGC-SLKLFREM 210 (523)
Q Consensus 136 g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~li~~~~~~~~~~~-a~~~~~~m 210 (523)
|+++.|.+ .|.+++.+|+ +|...+|..+|..+.+.++..+ |..++.+.
T Consensus 287 g~F~~ar~---------------------------aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI 339 (625)
T KOG4422|consen 287 GKFEDARK---------------------------AALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDI 339 (625)
T ss_pred cchHHHHH---------------------------HHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHH
Confidence 55544432 1223333332 2445555555555555544433 22222332
Q ss_pred HHC----CCC---C-CHHHHHHHHHHHhccccHHHHHHHHHHHHHcC----CCCchHHHHHHhhhhhhcCChHHHHHHHH
Q 038200 211 MKS----GFR---G-NDKTMASVLTACGRSARFNEGRSVHGYTVRTS----LKPNIILDTALIDLYSKCQKVEVAQRVFD 278 (523)
Q Consensus 211 ~~~----~~~---p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 278 (523)
+.. .++ | |...|...+..|.+..+.+.|.++...+.... +.|+..
T Consensus 340 ~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~----------------------- 396 (625)
T KOG4422|consen 340 QNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQH----------------------- 396 (625)
T ss_pred HHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHH-----------------------
Confidence 221 111 1 22334444555555555555555444333210 111110
Q ss_pred hcCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhHhcCCC
Q 038200 279 SMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIK 358 (523)
Q Consensus 279 ~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 358 (523)
...-|..+....|+....+.-...|+.|+-.- +-|+..+...++++..-.+.++-.-++|..++.- |..
T Consensus 397 -----~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~-----y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~-ght 465 (625)
T KOG4422|consen 397 -----RNFYYRKFFDLICQMESIDVTLKWYEDLVPSA-----YFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEY-GHT 465 (625)
T ss_pred -----HHHHHHHHHHHHHHHHHHHHHHHHHHHhccce-----ecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHh-hhh
Confidence 01123334444444444555555555554443 4455555555555555455554444444444442 333
Q ss_pred CChHHHHHHHHHHHcCC--------------------ChHHH-HHHHHhCCCCCCCCCchHHHHHHHHHHHHhcCCHHHH
Q 038200 359 PNFAHYWCMANLYAGAE--------------------LTEEA-EEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMV 417 (523)
Q Consensus 359 ~~~~~~~~l~~~~~~~g--------------------~~~~A-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 417 (523)
.+.....-+...+++.. ++.++ ...-.++.. ........+..+..+.+.|..++|
T Consensus 466 ~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r~----~~~~~t~l~~ia~Ll~R~G~~qkA 541 (625)
T KOG4422|consen 466 FRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYESQPIRQRA----QDWPATSLNCIAILLLRAGRTQKA 541 (625)
T ss_pred hhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHh----ccCChhHHHHHHHHHHHcchHHHH
Confidence 33333333333333222 11111 111122221 222334556666667788888888
Q ss_pred HHHHHHHhhcC---CCCh--hhHHHHHHHHHhcCChhHHHHHHHHHHhCCCcc
Q 038200 418 ERLAKSFVDMD---PQDF--SRYQFLLNVYAVAGQWEDVARVRELMKKRRMGR 465 (523)
Q Consensus 418 ~~~~~~~~~~~---p~~~--~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~ 465 (523)
-+++..+.+.. |..| .+...+.+.-.+......|..+++-|...+...
T Consensus 542 ~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~~~n~~~ 594 (625)
T KOG4422|consen 542 WEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLASAFNLPI 594 (625)
T ss_pred HHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCchh
Confidence 88888775422 3333 123345555566677778888888876665533
No 29
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.71 E-value=5.8e-14 Score=126.88 Aligned_cols=379 Identities=15% Similarity=0.090 Sum_probs=260.9
Q ss_pred HHHHHHHHHhCCCchHHHHHHHHHHHCCCCCC-cccHHHHHHHHHccCCchHHHHHHHHHHHhCCCCCchHHHHHHHHHH
Q 038200 55 VNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPN-SYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYG 133 (523)
Q Consensus 55 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 133 (523)
+-....-|-++|.+++|++.|.+.+.. .|| +..|.....+|...|+|+++.+--...++.++. -+..+..-..++-
T Consensus 118 lK~~GN~~f~~kkY~eAIkyY~~AI~l--~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~-Y~KAl~RRA~A~E 194 (606)
T KOG0547|consen 118 LKTKGNKFFRNKKYDEAIKYYTQAIEL--CPDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPD-YVKALLRRASAHE 194 (606)
T ss_pred HHhhhhhhhhcccHHHHHHHHHHHHhc--CCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcH-HHHHHHHHHHHHH
Confidence 334455678899999999999999985 688 777888888889999999998888877776433 3556666677777
Q ss_pred ccCChHHHHHHHhhcCCCCcchHHHHHHHHHhcC------------CHHHHHHHHhcCCC---CChhH------------
Q 038200 134 CFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSG------------DMSAAHELFDIMPE---RNVVS------------ 186 (523)
Q Consensus 134 ~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~------------~~~~a~~~~~~~~~---~~~~~------------ 186 (523)
..|++++|+.=. |-.+++.++.... -...+.+-+..-.. |+...
T Consensus 195 ~lg~~~eal~D~---------tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~ 265 (606)
T KOG0547|consen 195 QLGKFDEALFDV---------TVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADP 265 (606)
T ss_pred hhccHHHHHHhh---------hHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccc
Confidence 788887775321 1112222211111 11222222221111 11111
Q ss_pred -----------HHHHHHHHHh--cC---CchHHHHHHHHHHHCC-CCC-----CH------HHHHHHHHHHhccccHHHH
Q 038200 187 -----------WNIMISGYSK--SG---NPGCSLKLFREMMKSG-FRG-----ND------KTMASVLTACGRSARFNEG 238 (523)
Q Consensus 187 -----------~~~li~~~~~--~~---~~~~a~~~~~~m~~~~-~~p-----~~------~~~~~ll~~~~~~~~~~~a 238 (523)
...+..++.. .+ .+..|...+.+-.... ..+ |. .+......-+.-.|+.-.|
T Consensus 266 ~~~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a 345 (606)
T KOG0547|consen 266 KPLFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGA 345 (606)
T ss_pred cccccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhh
Confidence 1111111111 11 2333333332221110 011 11 1111122223446888889
Q ss_pred HHHHHHHHHcCCCCchHHHHHHhhhhhhcCChHHHHHHHHhcCC---CChHHHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 038200 239 RSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMAD---RNLVCWNAMILGHCIHGKPEEGIKLFTALVNGT 315 (523)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 315 (523)
.+-|+..++.... +...|--+..+|....+.++....|++... .|+.+|..-.+.+.-.+++++|..=|++.+..
T Consensus 346 ~~d~~~~I~l~~~-~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L- 423 (606)
T KOG0547|consen 346 QEDFDAAIKLDPA-FNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISL- 423 (606)
T ss_pred hhhHHHHHhcCcc-cchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhc-
Confidence 9999999887544 334477778889999999999999998865 46678888888888899999999999999884
Q ss_pred CCCCCcCCC-HHHHHHHHHHHhhcCcHHHHHHHHHHhhHhcCCCCChHHHHHHHHHHHcCCChHHHHHHHHhCCCCCCCC
Q 038200 316 VAGGSISPD-EITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNM 394 (523)
Q Consensus 316 ~~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 394 (523)
.|+ ...|..+..+..+.+++++++..|+..++ .++..+..|+.....+...++++.|.+.|+..++.
T Consensus 424 ------~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kk--kFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~L---- 491 (606)
T KOG0547|consen 424 ------DPENAYAYIQLCCALYRQHKIAESMKTFEEAKK--KFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIEL---- 491 (606)
T ss_pred ------ChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhh----
Confidence 464 56777777777889999999999999999 67778899999999999999999999999988753
Q ss_pred Cch---------HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 038200 395 SFE---------SIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKK 460 (523)
Q Consensus 395 ~~~---------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 460 (523)
.|+ +.+.-.++..-. .+++..|..+++++++++|....+|..|+..-.+.|+.++|+++|++-..
T Consensus 492 E~~~~~~~v~~~plV~Ka~l~~qw-k~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 492 EPREHLIIVNAAPLVHKALLVLQW-KEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQ 565 (606)
T ss_pred ccccccccccchhhhhhhHhhhch-hhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 333 222222222222 38999999999999999999889999999999999999999999997643
No 30
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.70 E-value=4.9e-17 Score=148.52 Aligned_cols=261 Identities=11% Similarity=0.070 Sum_probs=115.6
Q ss_pred HHHHHHHhcCCchHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhccccHHHHHHHHHHHHHcCCCCchHHHHHHhhhhhhc
Q 038200 189 IMISGYSKSGNPGCSLKLFREMMKSGFRGND-KTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKC 267 (523)
Q Consensus 189 ~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 267 (523)
.+...+.+.|++++|+++++.......+|+. ..|..+...+...++.+.|...++++...+.. +...+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccc
Confidence 4567788899999999999765554323444 44455666677789999999999999887533 56677777777 688
Q ss_pred CChHHHHHHHHhcCC--CChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcCCCHHHHHHHHHHHhhcCcHHHHH
Q 038200 268 QKVEVAQRVFDSMAD--RNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGR 345 (523)
Q Consensus 268 ~~~~~a~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~ 345 (523)
+++++|.+++...-+ ++...+..++..+...++++++..+++.+.... ..+++...|..+...+.+.|+.++|+
T Consensus 91 ~~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~----~~~~~~~~~~~~a~~~~~~G~~~~A~ 166 (280)
T PF13429_consen 91 GDPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELP----AAPDSARFWLALAEIYEQLGDPDKAL 166 (280)
T ss_dssp ---------------------------H-HHHTT-HHHHHHHHHHHHH-T-------T-HHHHHHHHHHHHHCCHHHHHH
T ss_pred ccccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhcc----CCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 999999998887643 566778888899999999999999999987643 13456778888889999999999999
Q ss_pred HHHHHhhHhcCCCCChHHHHHHHHHHHcCCChHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 038200 346 KYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFV 425 (523)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 425 (523)
+.+++..+. .+.|......++..+...|+.+++.++++..... .+.++..+..+..++...|+.++|..+++++.
T Consensus 167 ~~~~~al~~--~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~---~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~ 241 (280)
T PF13429_consen 167 RDYRKALEL--DPDDPDARNALAWLLIDMGDYDEAREALKRLLKA---APDDPDLWDALAAAYLQLGRYEEALEYLEKAL 241 (280)
T ss_dssp HHHHHHHHH---TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH----HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHH
T ss_pred HHHHHHHHc--CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHH---CcCHHHHHHHHHHHhccccccccccccccccc
Confidence 999999984 3445888889999999999999988888887643 24455677888899999999999999999999
Q ss_pred hcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 038200 426 DMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKK 460 (523)
Q Consensus 426 ~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 460 (523)
+..|+|+.....++.++...|+.++|.+++++..+
T Consensus 242 ~~~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 242 KLNPDDPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp HHSTT-HHHHHHHHHHHT-----------------
T ss_pred ccccccccccccccccccccccccccccccccccc
Confidence 99999999999999999999999999999887643
No 31
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.69 E-value=1.1e-13 Score=123.15 Aligned_cols=349 Identities=14% Similarity=0.075 Sum_probs=239.5
Q ss_pred CCChhHHHHHHHHhhccCCchhHHHHhccCCC----CCcccHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCcccHHHH
Q 038200 18 FNNSFWTINLLKHSADFGSPDYTVLVFKCINN----PGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSL 93 (523)
Q Consensus 18 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l 93 (523)
|-++.++..+|..+++....+.|.+++++... -+..+||.+|.+-.- ..-.+++.+|.+..+.||..|||++
T Consensus 204 PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~----~~~K~Lv~EMisqkm~Pnl~TfNal 279 (625)
T KOG4422|consen 204 PKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSY----SVGKKLVAEMISQKMTPNLFTFNAL 279 (625)
T ss_pred CCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHh----hccHHHHHHHHHhhcCCchHhHHHH
Confidence 47899999999999999999999999998753 466678888765432 2337899999999999999999999
Q ss_pred HHHHHccCCchH----HHHHHHHHHHhCCCCCchHHHHHHHHHHccCChHH-HHHHHhhcC------------CCCcchH
Q 038200 94 FGSCAKTGCVER----GGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDC-ARNMFVQMS------------PRDLISW 156 (523)
Q Consensus 94 l~~~~~~~~~~~----a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~------------~~~~~~~ 156 (523)
+.+.++.|+++. |.+++.+|.+.|+.|...+|..+|..+.+.++..+ |..++.++. +.|...+
T Consensus 280 L~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF 359 (625)
T KOG4422|consen 280 LSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFF 359 (625)
T ss_pred HHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHH
Confidence 999999998875 46788999999999999999999999999887744 444444332 2356678
Q ss_pred HHHHHHHHhcCCHHHHHHHHhcCCC--------CC---hhHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHHHHHHH
Q 038200 157 NSIVSGHVRSGDMSAAHELFDIMPE--------RN---VVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASV 225 (523)
Q Consensus 157 ~~ll~~~~~~~~~~~a~~~~~~~~~--------~~---~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l 225 (523)
...+..|.+..+.+.|.++-.-+.. ++ ..-|..+..+.++....+.-+..|+.|+-.-.-|+..+...+
T Consensus 360 ~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~ 439 (625)
T KOG4422|consen 360 QSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHL 439 (625)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHH
Confidence 8888889999999999888766653 22 234667777888889999999999999888788999999999
Q ss_pred HHHHhccccHHHHHHHHHHHHHcCCCCchHHHHHHhhhhhhcCChHHHHHHHHhcCCCChHHHHHHHHHHHh--cCChHH
Q 038200 226 LTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCI--HGKPEE 303 (523)
Q Consensus 226 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~--~g~~~~ 303 (523)
+++..-.|+++-..+++..+...|.........-+...+++.. ..|+...-..+-...++ ..-.+.
T Consensus 440 lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k------------~hp~tp~r~Ql~~~~ak~aad~~e~ 507 (625)
T KOG4422|consen 440 LRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDK------------LHPLTPEREQLQVAFAKCAADIKEA 507 (625)
T ss_pred HHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCC------------CCCCChHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999998888764433332222222222211 01211111111111111 011111
Q ss_pred HHHHHHHHHhCCCCCCCcCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhHhcCCCCChHHHH---HHHHHHHcCCChHHH
Q 038200 304 GIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYW---CMANLYAGAELTEEA 380 (523)
Q Consensus 304 a~~~~~~m~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~---~l~~~~~~~g~~~~A 380 (523)
....-.+|.+. .......+.++-.+.+.|..++|.++|..+.+...--|.....+ -+++.-.+.+....|
T Consensus 508 ~e~~~~R~r~~-------~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA 580 (625)
T KOG4422|consen 508 YESQPIRQRAQ-------DWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQA 580 (625)
T ss_pred HHhhHHHHHhc-------cCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHH
Confidence 12223334432 34444556666666777777777777777654423333333333 444555566666777
Q ss_pred HHHHHhCCC
Q 038200 381 EEILRKMPE 389 (523)
Q Consensus 381 ~~~~~~~~~ 389 (523)
..+++-|..
T Consensus 581 ~~~lQ~a~~ 589 (625)
T KOG4422|consen 581 IEVLQLASA 589 (625)
T ss_pred HHHHHHHHH
Confidence 777766653
No 32
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.69 E-value=1.3e-13 Score=123.54 Aligned_cols=399 Identities=12% Similarity=0.084 Sum_probs=268.9
Q ss_pred HHHHHHhCCCchHHHHHHHHHHHCCCCCCcccH-HHHHHHHHccCCchHHHHHHHHHHHhCCCCCch----HHHHHHHHH
Q 038200 58 VIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTF-VSLFGSCAKTGCVERGGMCHGLALKNGVDFELP----VMNSLINMY 132 (523)
Q Consensus 58 ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~-~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~l~~~~ 132 (523)
|.+-|..+..+.+|+..|+-..+...-|+.-.. ..+.+.+.+.+.+.+|+.+++..+..-+..+.. +.+.+.-.+
T Consensus 207 laqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvtf 286 (840)
T KOG2003|consen 207 LAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTF 286 (840)
T ss_pred HHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeE
Confidence 445566677888999999998887777776543 234566778889999999999888764444433 455555568
Q ss_pred HccCChHHHHHHHhhcC--CCCcchHHHHHHHHHhcCCHHHHHHHHhcCCC----------------CChhHHHHHH---
Q 038200 133 GCFGAMDCARNMFVQMS--PRDLISWNSIVSGHVRSGDMSAAHELFDIMPE----------------RNVVSWNIMI--- 191 (523)
Q Consensus 133 ~~~g~~~~A~~~~~~~~--~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~----------------~~~~~~~~li--- 191 (523)
.+.|+++.|+..|+... .|+..+-..++-++...|+.++..+.|.+|.. |+....+.-+
T Consensus 287 iq~gqy~dainsfdh~m~~~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd 366 (840)
T KOG2003|consen 287 IQAGQYDDAINSFDHCMEEAPNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKND 366 (840)
T ss_pred EecccchhhHhhHHHHHHhCccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhH
Confidence 89999999999999987 35555444455555667899999999988863 2222222211
Q ss_pred --HHHHhcC--CchHHHHHHHHHHHCCCCCCHH-----H--------HH--------HHHHHHhccccHHHHHHHHHHHH
Q 038200 192 --SGYSKSG--NPGCSLKLFREMMKSGFRGNDK-----T--------MA--------SVLTACGRSARFNEGRSVHGYTV 246 (523)
Q Consensus 192 --~~~~~~~--~~~~a~~~~~~m~~~~~~p~~~-----~--------~~--------~ll~~~~~~~~~~~a~~~~~~~~ 246 (523)
.-.-+.+ +.++++-.-.+++.--+.|+.. . +. .-...+.+.|+++.|.+++.-+.
T Consensus 367 ~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilkv~~ 446 (840)
T KOG2003|consen 367 HLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILKVFE 446 (840)
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHHHH
Confidence 1111111 1112211111222111222211 0 00 01122456677777777766555
Q ss_pred HcCCCC------------------------------------chHHHHHHhhhhhhcCChHHHHHHHHhcCCCChHHHHH
Q 038200 247 RTSLKP------------------------------------NIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNA 290 (523)
Q Consensus 247 ~~~~~~------------------------------------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 290 (523)
+..-.. +......-.+.....|++++|.+.|++....|...-.+
T Consensus 447 ~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ea 526 (840)
T KOG2003|consen 447 KKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEA 526 (840)
T ss_pred hccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHH
Confidence 432211 11111111122224578899999999888776654444
Q ss_pred H---HHHHHhcCChHHHHHHHHHHHhCCCCCCCcCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhHhcCCCCChHHHHHH
Q 038200 291 M---ILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCM 367 (523)
Q Consensus 291 l---i~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 367 (523)
| ...+-..|+.++|++.|-++..- +..+...+..+...|....+..+|++++.+... -++.|+.....|
T Consensus 527 lfniglt~e~~~~ldeald~f~klh~i------l~nn~evl~qianiye~led~aqaie~~~q~~s--lip~dp~ilskl 598 (840)
T KOG2003|consen 527 LFNIGLTAEALGNLDEALDCFLKLHAI------LLNNAEVLVQIANIYELLEDPAQAIELLMQANS--LIPNDPAILSKL 598 (840)
T ss_pred HHHhcccHHHhcCHHHHHHHHHHHHHH------HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcc--cCCCCHHHHHHH
Confidence 3 34577889999999999888763 344566777888889999999999999999887 677789999999
Q ss_pred HHHHHcCCChHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhhHHH-HHHHHHhcC
Q 038200 368 ANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQF-LLNVYAVAG 446 (523)
Q Consensus 368 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~-l~~~~~~~g 446 (523)
...|-+.|+-..|.+..-+--.- ++-+..+..-|...|....-++++..+|+++.-+.|+.. -|.. ++.++.+.|
T Consensus 599 ~dlydqegdksqafq~~ydsyry---fp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~-kwqlmiasc~rrsg 674 (840)
T KOG2003|consen 599 ADLYDQEGDKSQAFQCHYDSYRY---FPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQS-KWQLMIASCFRRSG 674 (840)
T ss_pred HHHhhcccchhhhhhhhhhcccc---cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHH-HHHHHHHHHHHhcc
Confidence 99999999999999987766532 455677777777778888889999999999998999544 4554 556667899
Q ss_pred ChhHHHHHHHHHHhCCCccCCce
Q 038200 447 QWEDVARVRELMKKRRMGRMPGC 469 (523)
Q Consensus 447 ~~~~A~~~~~~m~~~~~~~~~~~ 469 (523)
++.+|.++|+...++ ++.+.+|
T Consensus 675 nyqka~d~yk~~hrk-fpedldc 696 (840)
T KOG2003|consen 675 NYQKAFDLYKDIHRK-FPEDLDC 696 (840)
T ss_pred cHHHHHHHHHHHHHh-CccchHH
Confidence 999999999998765 5666665
No 33
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.68 E-value=2.6e-12 Score=124.88 Aligned_cols=505 Identities=10% Similarity=0.011 Sum_probs=283.2
Q ss_pred chHhHHHHHHHHhCCCCCChhHHHHHHHHhhccCCchhHHHHhcc---CCCCCcccHHHHHHHHHhCCCchHHHHHHHHH
Q 038200 2 KQLLQIQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKC---INNPGTFCVNAVIKAYSNSCVPDQGVVFYLQM 78 (523)
Q Consensus 2 ~~~~~i~~~~~~~g~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~---~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m 78 (523)
+.|..|...+++.. |.++..|-.|..+|-..|+.+++...+-. +.+.|..-|..+.....+.|+++.|.-.|.+.
T Consensus 156 eeA~~i~~EvIkqd--p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~cy~rA 233 (895)
T KOG2076|consen 156 EEAEEILMEVIKQD--PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQARYCYSRA 233 (895)
T ss_pred HHHHHHHHHHHHhC--ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 34556666666664 45667777777777777777777665532 23455566777777777777777777777777
Q ss_pred HHCCCCCCcccHHHHHHHHHccCCchHHHHHHHHHHHhCCCCCchHHH----HHHHHHHccCChHHHHHHHhhcCC----
Q 038200 79 IKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMN----SLINMYGCFGAMDCARNMFVQMSP---- 150 (523)
Q Consensus 79 ~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~----~l~~~~~~~g~~~~A~~~~~~~~~---- 150 (523)
++.. +++...+---...|-+.|+...|...+.++....++.|..-+. ..+..+...++-+.|.+.++....
T Consensus 234 I~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~ 312 (895)
T KOG2076|consen 234 IQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSKEKD 312 (895)
T ss_pred HhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhccc
Confidence 7653 4444444444555666677777777777776654432222222 233344455555666666665542
Q ss_pred -CCcchHHHHHHHHHhcCCHHHHHHHHhcCCC-------------------------------CChhHHHHHHHHHHhcC
Q 038200 151 -RDLISWNSIVSGHVRSGDMSAAHELFDIMPE-------------------------------RNVVSWNIMISGYSKSG 198 (523)
Q Consensus 151 -~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-------------------------------~~~~~~~~li~~~~~~~ 198 (523)
-+...++.++..|.+...++.|......+.. .+..+. -++-++....
T Consensus 313 ~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~-rl~icL~~L~ 391 (895)
T KOG2076|consen 313 EASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVI-RLMICLVHLK 391 (895)
T ss_pred cccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhH-hHhhhhhccc
Confidence 1344566666666666666666555443321 011110 1112233333
Q ss_pred CchHHHHHHHHHHHCCCCC--CHHHHHHHHHHHhccccHHHHHHHHHHHHHcCCCCchHHHHHHhhhhhhcCChHHHHHH
Q 038200 199 NPGCSLKLFREMMKSGFRG--NDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRV 276 (523)
Q Consensus 199 ~~~~a~~~~~~m~~~~~~p--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 276 (523)
..+....+...+.+..+.| +...|.-+..++...|++..|..+|..+.......+..+|-.+..+|...|..+.|...
T Consensus 392 ~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~ 471 (895)
T KOG2076|consen 392 ERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAIEF 471 (895)
T ss_pred ccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHH
Confidence 3333333444444444332 33456666677777777777777777777665445566777777777777777777777
Q ss_pred HHhcCC--C-ChHHHHHHHHHHHhcCChHHHHHHHHHHHhCC---CCCCCcCCCHHHHHHHHHHHhhcCcHHHHHHHHHH
Q 038200 277 FDSMAD--R-NLVCWNAMILGHCIHGKPEEGIKLFTALVNGT---VAGGSISPDEITFIGVICACVRAELLTEGRKYFRQ 350 (523)
Q Consensus 277 ~~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~---~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 350 (523)
|+.+.. | +....-+|...+.+.|+.++|.+.+..+...+ .......|+..........+.+.|+.++-..+-..
T Consensus 472 y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi~t~~~ 551 (895)
T KOG2076|consen 472 YEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREEFINTAST 551 (895)
T ss_pred HHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 777654 2 33445555666777777777777777654322 11122344444444444455555554443322222
Q ss_pred hhHhc--------------------------------------------------------------CCCCC--hHHHHH
Q 038200 351 MIDFY--------------------------------------------------------------KIKPN--FAHYWC 366 (523)
Q Consensus 351 ~~~~~--------------------------------------------------------------~~~~~--~~~~~~ 366 (523)
|...+ ++..+ -..+.-
T Consensus 552 Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~~~Lsiddwfel~~e 631 (895)
T KOG2076|consen 552 LVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRAVELRGLSIDDWFELFRE 631 (895)
T ss_pred HHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhhhhhccCcHHHHHHHHHH
Confidence 21110 00000 123455
Q ss_pred HHHHHHcCCChHHHHHHHHhCCCCCCCCCchH---HHHHHHHHHHHhcCCHHHHHHHHHHHhhc-----CCCChhhHHHH
Q 038200 367 MANLYAGAELTEEAEEILRKMPEDNDNMSFES---IMWVSLLSLCRFQGAVAMVERLAKSFVDM-----DPQDFSRYQFL 438 (523)
Q Consensus 367 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~p~~~~~~~~l 438 (523)
++..+++.+++++|+.+...+.+...-..++. ..-...+.++...+++..|...++.++.. +|.-...|+..
T Consensus 632 ~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~~~~~~~~~~q~~l~n~~ 711 (895)
T KOG2076|consen 632 LILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVITQFQFYLDVYQLNLWNLD 711 (895)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhhhhhHHHHHHHHH
Confidence 67788899999999999888775322122222 12233445667889999999999999875 55445566655
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCccCCceeEEEeCCeEEEEecCCCCchHHHHHHHHHHhcccCCcccccccccc
Q 038200 439 LNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLKEVVEKLKVGHFWRGGMKEEVNKMMECRQSRSLATVSKQLP 515 (523)
Q Consensus 439 ~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 515 (523)
.+...+.|+-.--.+.+.+........+|. ...+ .-|.+.. ......|+...-++.+.+|+++..-...|++
T Consensus 712 ~s~~~~~~q~v~~~R~~~~~~~~~~~~~~~--l~~i--~gh~~~~-~~s~~~Al~~y~ra~~~~pd~Pl~nl~lgla 783 (895)
T KOG2076|consen 712 FSYFSKYGQRVCYLRLIMRLLVKNKDDTPP--LALI--YGHNLFV-NASFKHALQEYMRAFRQNPDSPLINLCLGLA 783 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCccCCcc--eeee--echhHhh-ccchHHHHHHHHHHHHhCCCCcHHHHHHHHH
Confidence 555555555444444444433322222221 1111 1122222 2467889999999999999988765544443
No 34
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.67 E-value=2e-13 Score=132.43 Aligned_cols=322 Identities=12% Similarity=0.127 Sum_probs=183.6
Q ss_pred CCchHHHHHHHHHHHhCCCCCchHHHHHHHHHHccCChHHHHHHHhhc---CCCCcchHHHHHHHHHhcCCHHHHHHHHh
Q 038200 101 GCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQM---SPRDLISWNSIVSGHVRSGDMSAAHELFD 177 (523)
Q Consensus 101 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~---~~~~~~~~~~ll~~~~~~~~~~~a~~~~~ 177 (523)
|++++|..++.++++..+. +...|-+|..+|-..|+.+++...+-.. .+.|...|-.+.....+.|+++.|.-+|.
T Consensus 153 g~~eeA~~i~~EvIkqdp~-~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~cy~ 231 (895)
T KOG2076|consen 153 GDLEEAEEILMEVIKQDPR-NPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQARYCYS 231 (895)
T ss_pred CCHHHHHHHHHHHHHhCcc-chhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHHHHH
Confidence 5555555555555555432 4445555555555555555555443322 23344444444444455555555555555
Q ss_pred cCCCCChhHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHcCCCCchHHH
Q 038200 178 IMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILD 257 (523)
Q Consensus 178 ~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 257 (523)
+. ++.. +++...+---...|-+.|+...|...|.++.....+.+..-.
T Consensus 232 rA-------------------------------I~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~ 279 (895)
T KOG2076|consen 232 RA-------------------------------IQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERI 279 (895)
T ss_pred HH-------------------------------HhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHH
Confidence 54 4432 223233333333444444444444444444443221121111
Q ss_pred H----HHhhhhhhcCChHHHHHHHHhcCC-----CChHHHHHHHHHHHhcCChHHHHHHHHHHHhCC-------------
Q 038200 258 T----ALIDLYSKCQKVEVAQRVFDSMAD-----RNLVCWNAMILGHCIHGKPEEGIKLFTALVNGT------------- 315 (523)
Q Consensus 258 ~----~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~------------- 315 (523)
- ..++.+...++-+.|.+.++.... -+...++.++..|.+...++.|......+....
T Consensus 280 ~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~ 359 (895)
T KOG2076|consen 280 EDLIRRVAHYFITHNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDER 359 (895)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhh
Confidence 1 122333333333444444443322 122234444444444455555544444444311
Q ss_pred ---------CCCCCcCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhHhcC--CCCChHHHHHHHHHHHcCCChHHHHHHH
Q 038200 316 ---------VAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYK--IKPNFAHYWCMANLYAGAELTEEAEEIL 384 (523)
Q Consensus 316 ---------~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 384 (523)
..+.+..++... ..+.-++.+.+..+....+.....+. . ..-++..|.-+..+|.+.|++.+|+.++
T Consensus 360 ~~~~~~~~~~~~~~~s~~l~v-~rl~icL~~L~~~e~~e~ll~~l~~~-n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l 437 (895)
T KOG2076|consen 360 RREEPNALCEVGKELSYDLRV-IRLMICLVHLKERELLEALLHFLVED-NVWVSDDVDLYLDLADALTNIGKYKEALRLL 437 (895)
T ss_pred ccccccccccCCCCCCccchh-HhHhhhhhcccccchHHHHHHHHHHh-cCChhhhHHHHHHHHHHHHhcccHHHHHHHH
Confidence 000113334333 12223334444444444444444443 4 3335788999999999999999999999
Q ss_pred HhCCCCCCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHH
Q 038200 385 RKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMK 459 (523)
Q Consensus 385 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 459 (523)
..+.... ...+...|..+..+|...|.+++|.+.|++++...|++..+-..|...|.+.|+.++|.+.++.+.
T Consensus 438 ~~i~~~~--~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~ 510 (895)
T KOG2076|consen 438 SPITNRE--GYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQII 510 (895)
T ss_pred HHHhcCc--cccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhccc
Confidence 9999532 233477899999999999999999999999999999999999999999999999999999999875
No 35
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.66 E-value=2.9e-12 Score=115.63 Aligned_cols=437 Identities=11% Similarity=0.107 Sum_probs=328.2
Q ss_pred cccHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCcccHHHHHHHHHccCCchHHHHHHHHHHHhCCCCCchHHHHHHHH
Q 038200 52 TFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINM 131 (523)
Q Consensus 52 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 131 (523)
...|-....-=..++++..|.++|+..+.-+ ..+...|...+.+=.++..+..|..+++..+..-+. -...|-..+.+
T Consensus 73 ~~~WikYaqwEesq~e~~RARSv~ERALdvd-~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPR-VdqlWyKY~ym 150 (677)
T KOG1915|consen 73 MQVWIKYAQWEESQKEIQRARSVFERALDVD-YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPR-VDQLWYKYIYM 150 (677)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHhcc-cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcch-HHHHHHHHHHH
Confidence 3344444444456788899999999999765 556667888888888999999999999999886433 33455566666
Q ss_pred HHccCChHHHHHHHhhcC--CCCcchHHHHHHHHHhcCCHHHHHHHHhcCC--CCChhHHHHHHHHHHhcCCchHHHHHH
Q 038200 132 YGCFGAMDCARNMFVQMS--PRDLISWNSIVSGHVRSGDMSAAHELFDIMP--ERNVVSWNIMISGYSKSGNPGCSLKLF 207 (523)
Q Consensus 132 ~~~~g~~~~A~~~~~~~~--~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~a~~~~ 207 (523)
--..|++..|.++|++-. +|+...|.+.|+.=.+-..++.|..++++.. .|++.+|--....-.+.|+...|..+|
T Consensus 151 EE~LgNi~gaRqiferW~~w~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~Vy 230 (677)
T KOG1915|consen 151 EEMLGNIAGARQIFERWMEWEPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSVY 230 (677)
T ss_pred HHHhcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 667899999999999876 7999999999999999999999999999965 599999998888888999999999999
Q ss_pred HHHHHC-CC-CCCHHHHHHHHHHHhccccHHHHHHHHHHHHHcCCCCc--hHHHHHHhhhhhhcCChHHHHHH-------
Q 038200 208 REMMKS-GF-RGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPN--IILDTALIDLYSKCQKVEVAQRV------- 276 (523)
Q Consensus 208 ~~m~~~-~~-~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~------- 276 (523)
....+. |- ..+...|.+...--.++..++.|.-+|+..++.- +.+ ...|..+...--+-|+.....+.
T Consensus 231 erAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~-pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~ 309 (677)
T KOG1915|consen 231 ERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHI-PKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKF 309 (677)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhh
Confidence 988764 10 1122344444444456778899999999988863 323 45555555544455664443332
Q ss_pred -HHhcCCC---ChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcCCCHH-------HHHHHHHHH---hhcCcHH
Q 038200 277 -FDSMADR---NLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEI-------TFIGVICAC---VRAELLT 342 (523)
Q Consensus 277 -~~~~~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~p~~~-------~~~~ll~~~---~~~~~~~ 342 (523)
|+.+... |-.+|--.+..-...|+.+...++|++.+.. ++|-.. .|.-+=.+| ....+.+
T Consensus 310 qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIan------vpp~~ekr~W~RYIYLWinYalyeEle~ed~e 383 (677)
T KOG1915|consen 310 QYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIAN------VPPASEKRYWRRYIYLWINYALYEELEAEDVE 383 (677)
T ss_pred HHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc------CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 2233332 5567777888878889999999999999986 466321 222222222 3578999
Q ss_pred HHHHHHHHhhHhcCCCCChHHHHHHHHHH----HcCCChHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHhcCCHHHHH
Q 038200 343 EGRKYFRQMIDFYKIKPNFAHYWCMANLY----AGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVE 418 (523)
Q Consensus 343 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 418 (523)
.+.++|+...+ -++....|+.-+--+| .++.++..|.+++...+ |..|...+|...+..-.+.++++...
T Consensus 384 rtr~vyq~~l~--lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI----G~cPK~KlFk~YIelElqL~efDRcR 457 (677)
T KOG1915|consen 384 RTRQVYQACLD--LIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI----GKCPKDKLFKGYIELELQLREFDRCR 457 (677)
T ss_pred HHHHHHHHHHh--hcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh----ccCCchhHHHHHHHHHHHHhhHHHHH
Confidence 99999999998 5666666666554444 57889999999999988 36899999999999999999999999
Q ss_pred HHHHHHhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCCceeEEEeCCeEEEEecCCCCchHHHHHHHHH
Q 038200 419 RLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLKEVVEKLKVGHFWRGGMKEEVNKM 498 (523)
Q Consensus 419 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 498 (523)
.++++.++.+|.+..+|...+..-...|+++.|..+|+-..+...-..|..-|-.+ ..|-...+..+.+-++.+++
T Consensus 458 kLYEkfle~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaY----IdFEi~~~E~ekaR~LYerl 533 (677)
T KOG1915|consen 458 KLYEKFLEFSPENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAY----IDFEIEEGEFEKARALYERL 533 (677)
T ss_pred HHHHHHHhcChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHh----hhhhhhcchHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999987765555554322111 22333335667788888899
Q ss_pred HhcccCCcc
Q 038200 499 MECRQSRSL 507 (523)
Q Consensus 499 ~~~~~~~~~ 507 (523)
++.+++...
T Consensus 534 L~rt~h~kv 542 (677)
T KOG1915|consen 534 LDRTQHVKV 542 (677)
T ss_pred HHhcccchH
Confidence 988877653
No 36
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.66 E-value=1.1e-11 Score=116.16 Aligned_cols=435 Identities=12% Similarity=0.073 Sum_probs=297.7
Q ss_pred HHHHHhhccCCchhHHHHhcc---CCCCCcccHHHHHHHHHhCCCchHHHHHHHH----HHHCCCCCCcccHHHHHHHHH
Q 038200 26 NLLKHSADFGSPDYTVLVFKC---INNPGTFCVNAVIKAYSNSCVPDQGVVFYLQ----MIKNGFMPNSYTFVSLFGSCA 98 (523)
Q Consensus 26 ~l~~~~~~~g~~~~A~~~~~~---~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~----m~~~~~~p~~~~~~~ll~~~~ 98 (523)
-|.-+|++...++.|.++++. ..+.+...|.+-...=-.+|+.+...+++.+ +...|+..+...|..=...|-
T Consensus 411 dLwlAlarLetYenAkkvLNkaRe~iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e 490 (913)
T KOG0495|consen 411 DLWLALARLETYENAKKVLNKAREIIPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACE 490 (913)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHh
Confidence 344466777888888888865 3577888887777777788998888888765 445688888888888888888
Q ss_pred ccCCchHHHHHHHHHHHhCCCC--CchHHHHHHHHHHccCChHHHHHHHhhcC---CCCcchHHHHHHHHHhcCCHHHHH
Q 038200 99 KTGCVERGGMCHGLALKNGVDF--ELPVMNSLINMYGCFGAMDCARNMFVQMS---PRDLISWNSIVSGHVRSGDMSAAH 173 (523)
Q Consensus 99 ~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~ll~~~~~~~~~~~a~ 173 (523)
..|.+-.+..+....+..|+.- -..+|+.-...|.+.+.++-|..+|.... +.+...|......--..|..+.-.
T Consensus 491 ~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~ 570 (913)
T KOG0495|consen 491 DAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLE 570 (913)
T ss_pred hcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHH
Confidence 8888888888888888877652 24577777888888888888888888776 335566666666656667777777
Q ss_pred HHHhcCCC--C-ChhHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHcCC
Q 038200 174 ELFDIMPE--R-NVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSL 250 (523)
Q Consensus 174 ~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 250 (523)
.+|++... | ....|-.....+-..|+...|..++.+..+.. +.+...+...+.....+..++.|..+|.+....
T Consensus 571 Allqkav~~~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~-pnseeiwlaavKle~en~e~eraR~llakar~~-- 647 (913)
T KOG0495|consen 571 ALLQKAVEQCPKAEILWLMYAKEKWKAGDVPAARVILDQAFEAN-PNSEEIWLAAVKLEFENDELERARDLLAKARSI-- 647 (913)
T ss_pred HHHHHHHHhCCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhC-CCcHHHHHHHHHHhhccccHHHHHHHHHHHhcc--
Confidence 77776654 2 33445555556666677777777777766653 335556666666667777777777777766653
Q ss_pred CCchHHHHHHhhhhhhcCChHHHHHHHHhcCC--CCh-HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcCCC-HH
Q 038200 251 KPNIILDTALIDLYSKCQKVEVAQRVFDSMAD--RNL-VCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPD-EI 326 (523)
Q Consensus 251 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~-~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~p~-~~ 326 (523)
.|+..+|..-+....-.++.++|++++++..+ |+. ..|-.+.+.+-+.++.+.|.+.|..-.+. .|+ ..
T Consensus 648 sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-------cP~~ip 720 (913)
T KOG0495|consen 648 SGTERVWMKSANLERYLDNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK-------CPNSIP 720 (913)
T ss_pred CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-------CCCCch
Confidence 35555665555555556677777777766654 333 35666666666667777766666554442 343 33
Q ss_pred HHHHHHHHHhhcCcHHHHHHHHHHhhHhcCCCCChHHHHHHHHHHHcCCChHHHHHHHHhCCCCC---------------
Q 038200 327 TFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDN--------------- 391 (523)
Q Consensus 327 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--------------- 391 (523)
.|..|...=.+.|.+-.|..++++..- .-+-+...|...|++-.+.|+.+.|..+..+.++..
T Consensus 721 LWllLakleEk~~~~~rAR~ildrarl--kNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~ 798 (913)
T KOG0495|consen 721 LWLLLAKLEEKDGQLVRARSILDRARL--KNPKNALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEP 798 (913)
T ss_pred HHHHHHHHHHHhcchhhHHHHHHHHHh--cCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhcc
Confidence 444444455556666677777776665 344456666666777777777666665554443220
Q ss_pred ------------CCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHH
Q 038200 392 ------------DNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMK 459 (523)
Q Consensus 392 ------------~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 459 (523)
....-|+.+...+...+....+++.|...|.+++..+|+.-.+|..+...+.+.|.-++-.+++.+..
T Consensus 799 ~~~rkTks~DALkkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~~c~ 878 (913)
T KOG0495|consen 799 RPQRKTKSIDALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCE 878 (913)
T ss_pred CcccchHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 01223334555666677788889999999999999999988899999999999999888889988886
Q ss_pred hCCCccCCceeEEEe
Q 038200 460 KRRMGRMPGCRLVDL 474 (523)
Q Consensus 460 ~~~~~~~~~~~~~~~ 474 (523)
.. .|.-|..|..+
T Consensus 879 ~~--EP~hG~~W~av 891 (913)
T KOG0495|consen 879 TA--EPTHGELWQAV 891 (913)
T ss_pred cc--CCCCCcHHHHH
Confidence 64 44455445443
No 37
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.66 E-value=1.6e-12 Score=121.70 Aligned_cols=354 Identities=11% Similarity=0.064 Sum_probs=207.4
Q ss_pred HHHhCCCchHHHHHHHHHHHCCCCCCcccHHHHHHHHHccCCchHHHHHHHHHH----HhCCCCCchHHHHHHHHHHccC
Q 038200 61 AYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLAL----KNGVDFELPVMNSLINMYGCFG 136 (523)
Q Consensus 61 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~g 136 (523)
++++..-|+.|..+++..++. ++.+...|.+....=-+.|+.+....++++.+ ..|+..+..-|-.=...|-..|
T Consensus 415 AlarLetYenAkkvLNkaRe~-iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~ag 493 (913)
T KOG0495|consen 415 ALARLETYENAKKVLNKAREI-IPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAG 493 (913)
T ss_pred HHHHHHHHHHHHHHHHHHHhh-CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcC
Confidence 344445555555555555543 44455555544444445555555555444332 2455555555555555555555
Q ss_pred ChHHHHHHHhhcC-----C-CCcchHHHHHHHHHhcCCHHHHHHHHhcCCC---CChhHHHHHHHHHHhcCCchHHHHHH
Q 038200 137 AMDCARNMFVQMS-----P-RDLISWNSIVSGHVRSGDMSAAHELFDIMPE---RNVVSWNIMISGYSKSGNPGCSLKLF 207 (523)
Q Consensus 137 ~~~~A~~~~~~~~-----~-~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~ 207 (523)
..-.+..+..... + .-..+|+.-...|.+.+.++-|..+|....+ .+...|...+..--..|..+....+|
T Consensus 494 sv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~All 573 (913)
T KOG0495|consen 494 SVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALL 573 (913)
T ss_pred ChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHH
Confidence 5544444444332 1 1223555555556666666666666666654 23445655555555566667777777
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHcCCCCchHHHHHHhhhhhhcCChHHHHHHHHhcCC--CCh
Q 038200 208 REMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMAD--RNL 285 (523)
Q Consensus 208 ~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~ 285 (523)
++.+.. ++-....|......+-..|+...|..++.++.+.... +..++-+-+.......+++.|..+|.+... +..
T Consensus 574 qkav~~-~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pn-seeiwlaavKle~en~e~eraR~llakar~~sgTe 651 (913)
T KOG0495|consen 574 QKAVEQ-CPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPN-SEEIWLAAVKLEFENDELERARDLLAKARSISGTE 651 (913)
T ss_pred HHHHHh-CCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCC-cHHHHHHHHHHhhccccHHHHHHHHHHHhccCCcc
Confidence 776665 2333444455555566667777777777777665422 556666666666777777777777766643 445
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcCCC-HHHHHHHHHHHhhcCcHHHHHHHHHHhhHhcCCCCChHHH
Q 038200 286 VCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPD-EITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHY 364 (523)
Q Consensus 286 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 364 (523)
..|.--+....-.++.++|.+++++.++. -|+ ...|..+.+.+.+.++++.|...|..-.+ ..+-.+..|
T Consensus 652 Rv~mKs~~~er~ld~~eeA~rllEe~lk~-------fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k--~cP~~ipLW 722 (913)
T KOG0495|consen 652 RVWMKSANLERYLDNVEEALRLLEEALKS-------FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTK--KCPNSIPLW 722 (913)
T ss_pred hhhHHHhHHHHHhhhHHHHHHHHHHHHHh-------CCchHHHHHHHhHHHHHHHHHHHHHHHHHhccc--cCCCCchHH
Confidence 55555555555566777777777777663 355 34556666667777777777776666554 334445566
Q ss_pred HHHHHHHHcCCChHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCC
Q 038200 365 WCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDP 429 (523)
Q Consensus 365 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p 429 (523)
-.|.+.--+.|.+-.|..++++..-+ -+.+...|...+..-.+.|+.+.|..+..++++--|
T Consensus 723 llLakleEk~~~~~rAR~ildrarlk---NPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp 784 (913)
T KOG0495|consen 723 LLLAKLEEKDGQLVRARSILDRARLK---NPKNALLWLESIRMELRAGNKEQAELLMAKALQECP 784 (913)
T ss_pred HHHHHHHHHhcchhhHHHHHHHHHhc---CCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 66666666677777777777766643 244566677777777777777777776666665433
No 38
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.65 E-value=4.2e-13 Score=128.29 Aligned_cols=277 Identities=10% Similarity=0.066 Sum_probs=187.8
Q ss_pred cCCHHHHHHHHhcCCCC--Chh-HHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHHHHH--HHHHHHhccccHHHHHH
Q 038200 166 SGDMSAAHELFDIMPER--NVV-SWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMA--SVLTACGRSARFNEGRS 240 (523)
Q Consensus 166 ~~~~~~a~~~~~~~~~~--~~~-~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~--~ll~~~~~~~~~~~a~~ 240 (523)
.|+++.|++.+....+. +.. .|.....+..+.|+++.|..++.++.+. .|+...+. .....+...|+++.|..
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al~ 174 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAARH 174 (398)
T ss_pred CCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHHH
Confidence 46666666666655442 122 2323344446777777777777777663 44543322 33456677777788877
Q ss_pred HHHHHHHcCCCCchHHHHHHhhhhhhcCChHHHHHHHHhcCCCC---h--------HHHHHHHHHHHhcCChHHHHHHHH
Q 038200 241 VHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRN---L--------VCWNAMILGHCIHGKPEEGIKLFT 309 (523)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~--------~~~~~li~~~~~~g~~~~a~~~~~ 309 (523)
.++.+.+.. +-+......+...|.+.|++++|.+++..+.+.. . .+|..++.......+.+...++|+
T Consensus 175 ~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~ 253 (398)
T PRK10747 175 GVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWK 253 (398)
T ss_pred HHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 777777765 3356677777777777788888877777765421 1 133333444444455666667777
Q ss_pred HHHhCCCCCCCcCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhHhcCCCCChHHHHHHHHHHHcCCChHHHHHHHHhCCC
Q 038200 310 ALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPE 389 (523)
Q Consensus 310 ~m~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 389 (523)
.+.+. .+.++.....+..++...|+.++|.+++++..+. +|+.... ++.+....++.+++.+.+++..+
T Consensus 254 ~lp~~------~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~---~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk 322 (398)
T PRK10747 254 NQSRK------TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR---QYDERLV--LLIPRLKTNNPEQLEKVLRQQIK 322 (398)
T ss_pred hCCHH------HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCCHHHH--HHHhhccCCChHHHHHHHHHHHh
Confidence 66543 3456777888888889999999999999888763 3444322 33344456888999999988886
Q ss_pred CCCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 038200 390 DNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKK 460 (523)
Q Consensus 390 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 460 (523)
. .+-|......+...|...+++++|.+.|+++.+..|+ ...+..|+.++.+.|+.++|.+++++-..
T Consensus 323 ~---~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~-~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 323 Q---HGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPD-AYDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred h---CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 4 3445666777788889999999999999999998885 45678899999999999999888886643
No 39
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.64 E-value=1.1e-11 Score=112.04 Aligned_cols=440 Identities=10% Similarity=0.054 Sum_probs=299.6
Q ss_pred chHhHHHHHHHHhCCCCCChhHHHHHHHHhhccCCchhHHHHhccCCC--CCc-ccHHHHHHHHHhCCCchHHHHHHHHH
Q 038200 2 KQLLQIQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINN--PGT-FCVNAVIKAYSNSCVPDQGVVFYLQM 78 (523)
Q Consensus 2 ~~~~~i~~~~~~~g~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~-~~~~~ll~~~~~~~~~~~a~~~~~~m 78 (523)
+.|+.||+..+..... +..++-..+.+=.++..+..|..+|++... |.+ ..|-..+-.=-..|+...|.++|+.-
T Consensus 90 ~RARSv~ERALdvd~r--~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~LgNi~gaRqiferW 167 (677)
T KOG1915|consen 90 QRARSVFERALDVDYR--NITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEEMLGNIAGARQIFERW 167 (677)
T ss_pred HHHHHHHHHHHhcccc--cchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 4677777777766533 666777777777777778888888876532 222 23444444444557788888888776
Q ss_pred HHCCCCCCcccHHHHHHHHHccCCchHHHHHHHHHHHhCCCCCchHHHHHHHHHHccCChHHHHHHHhhcCCC------C
Q 038200 79 IKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPR------D 152 (523)
Q Consensus 79 ~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~ 152 (523)
.. ..|+...|.+.++.=.+-...+.|..+++..+-. .|++.+|-.....-.+.|....|.++|+...+. +
T Consensus 168 ~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~~~ 243 (677)
T KOG1915|consen 168 ME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDDEEA 243 (677)
T ss_pred Hc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHHH
Confidence 65 4688888888888777777788888888777653 577777777777777788888888877776521 2
Q ss_pred cchHHHHHHHHHhcCCHHHHHHHHhcCCC--C---ChhHHHHHHHHHHhcCCchHHHHH--------HHHHHHCCCCCCH
Q 038200 153 LISWNSIVSGHVRSGDMSAAHELFDIMPE--R---NVVSWNIMISGYSKSGNPGCSLKL--------FREMMKSGFRGND 219 (523)
Q Consensus 153 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~--~---~~~~~~~li~~~~~~~~~~~a~~~--------~~~m~~~~~~p~~ 219 (523)
...+.+...-=.++..++.|.-+|.-... | ....|..+...--+-|+.....+. |+.+++.+ +-|-
T Consensus 244 e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~n-p~nY 322 (677)
T KOG1915|consen 244 EILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKN-PYNY 322 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhC-CCCc
Confidence 23344444444456667777777655433 1 234444444444445554443332 34444443 5577
Q ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHHcCCCCch--HHHHHHhh--------hhhhcCChHHHHHHHHhcCC--C-ChH
Q 038200 220 KTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNI--ILDTALID--------LYSKCQKVEVAQRVFDSMAD--R-NLV 286 (523)
Q Consensus 220 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~--------~~~~~~~~~~a~~~~~~~~~--~-~~~ 286 (523)
.+|--.++.-...|+.+...++|+.++.. ++|-. ..|.-.|- .-....+.+.+.++|+...+ | ...
T Consensus 323 DsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~lIPHkkF 401 (677)
T KOG1915|consen 323 DSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDLIPHKKF 401 (677)
T ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCcccc
Confidence 78888888888889999999999998876 34421 11211111 11345788888888887755 2 223
Q ss_pred H----HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhHhcCCCCChH
Q 038200 287 C----WNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFA 362 (523)
Q Consensus 287 ~----~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 362 (523)
| |.....--.++.+...|.+++...+. ..|-..+|...|..=.+.+.++.+..++++..+ --+-+..
T Consensus 402 tFaKiWlmyA~feIRq~~l~~ARkiLG~AIG-------~cPK~KlFk~YIelElqL~efDRcRkLYEkfle--~~Pe~c~ 472 (677)
T KOG1915|consen 402 TFAKIWLMYAQFEIRQLNLTGARKILGNAIG-------KCPKDKLFKGYIELELQLREFDRCRKLYEKFLE--FSPENCY 472 (677)
T ss_pred hHHHHHHHHHHHHHHHcccHHHHHHHHHHhc-------cCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHh--cChHhhH
Confidence 3 44444455678899999999988876 569999999999998999999999999999987 3344678
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhhHHHHHHHH
Q 038200 363 HYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVY 442 (523)
Q Consensus 363 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 442 (523)
+|......-...|+.+.|..+|.-++.+.. ...-...|-..+..-...|.++.|..+++.+++..+.. .+|.+.+..-
T Consensus 473 ~W~kyaElE~~LgdtdRaRaifelAi~qp~-ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h~-kvWisFA~fe 550 (677)
T KOG1915|consen 473 AWSKYAELETSLGDTDRARAIFELAISQPA-LDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQHV-KVWISFAKFE 550 (677)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhcCcc-cccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcccc-hHHHhHHHHh
Confidence 888888888889999999999999885422 22235677777777788899999999999999987743 4777766554
Q ss_pred H-----hcC-----------ChhHHHHHHHHHHh
Q 038200 443 A-----VAG-----------QWEDVARVRELMKK 460 (523)
Q Consensus 443 ~-----~~g-----------~~~~A~~~~~~m~~ 460 (523)
. +.| ....|..+|++...
T Consensus 551 ~s~~~~~~~~~~~~~e~~~~~~~~AR~iferAn~ 584 (677)
T KOG1915|consen 551 ASASEGQEDEDLAELEITDENIKRARKIFERANT 584 (677)
T ss_pred ccccccccccchhhhhcchhHHHHHHHHHHHHHH
Confidence 4 334 45677788887644
No 40
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.62 E-value=5.1e-12 Score=113.83 Aligned_cols=328 Identities=13% Similarity=0.090 Sum_probs=246.7
Q ss_pred CCchHHHHHHHHHHccCChHHHHHHHhhcCCCCcchHHHHHHHHHhcCCHHHHHHHHhcCCCCChh-HHHHHHHHHHhcC
Q 038200 120 FELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVV-SWNIMISGYSKSG 198 (523)
Q Consensus 120 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~li~~~~~~~ 198 (523)
.|...+-...-.+.+.|..+.|+..|......-+..|.+.+....-..+.+.+..+....+..+.. .---+..++....
T Consensus 162 ~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~~e~~~~l~~~l~~~~h~M~~~F~~~a~~el~ 241 (559)
T KOG1155|consen 162 KDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITDIEILSILVVGLPSDMHWMKKFFLKKAYQELH 241 (559)
T ss_pred chhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhchHHHHHHHHhcCcccchHHHHHHHHHHHHHHH
Confidence 344444444445667888899999998888766777777777666666666666665555542211 1122445666777
Q ss_pred CchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHcCCC--CchHHHHHHhhhhhhcCChHH-HHH
Q 038200 199 NPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLK--PNIILDTALIDLYSKCQKVEV-AQR 275 (523)
Q Consensus 199 ~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~-a~~ 275 (523)
+.++++.-.......|++.+...-+....+.....++++|+.+|+++.+..+- -|..+|..++-.--...++.- |..
T Consensus 242 q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA~~ 321 (559)
T KOG1155|consen 242 QHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLAQN 321 (559)
T ss_pred HHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHHHH
Confidence 88889888888888887777766667777778889999999999999987421 155666665433222212211 222
Q ss_pred HHHhcCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcCCC-HHHHHHHHHHHhhcCcHHHHHHHHHHhhHh
Q 038200 276 VFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPD-EITFIGVICACVRAELLTEGRKYFRQMIDF 354 (523)
Q Consensus 276 ~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 354 (523)
+ -.+.+--+.|...+..-|...++.++|...|++..+.+ |. ...|+.+.+-|...++...|.+-++++.+
T Consensus 322 v-~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-------p~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvd- 392 (559)
T KOG1155|consen 322 V-SNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLN-------PKYLSAWTLMGHEYVEMKNTHAAIESYRRAVD- 392 (559)
T ss_pred H-HHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcC-------cchhHHHHHhhHHHHHhcccHHHHHHHHHHHh-
Confidence 2 22333345677778888888999999999999999954 65 45677777889999999999999999997
Q ss_pred cCCCCChHHHHHHHHHHHcCCChHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhh
Q 038200 355 YKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSR 434 (523)
Q Consensus 355 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 434 (523)
-.+.|-..|-.|.++|.-.+...=|+-.|++..+- -+.|...|.+|..+|.+.++.++|+..|+.+...+..+..+
T Consensus 393 -i~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~---kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~ 468 (559)
T KOG1155|consen 393 -INPRDYRAWYGLGQAYEIMKMHFYALYYFQKALEL---KPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSA 468 (559)
T ss_pred -cCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhc---CCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHH
Confidence 34557889999999999999999999999999863 34478999999999999999999999999999887767789
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHh
Q 038200 435 YQFLLNVYAVAGQWEDVARVRELMKK 460 (523)
Q Consensus 435 ~~~l~~~~~~~g~~~~A~~~~~~m~~ 460 (523)
+..|+.+|.+.++..+|...|++-.+
T Consensus 469 l~~LakLye~l~d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 469 LVRLAKLYEELKDLNEAAQYYEKYVE 494 (559)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 99999999999999999999987765
No 41
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.61 E-value=2.5e-12 Score=122.96 Aligned_cols=277 Identities=9% Similarity=0.003 Sum_probs=203.1
Q ss_pred cCChHHHHHHHhhcCCC--CcchHHHH-HHHHHhcCCHHHHHHHHhcCCC--CChhHHH--HHHHHHHhcCCchHHHHHH
Q 038200 135 FGAMDCARNMFVQMSPR--DLISWNSI-VSGHVRSGDMSAAHELFDIMPE--RNVVSWN--IMISGYSKSGNPGCSLKLF 207 (523)
Q Consensus 135 ~g~~~~A~~~~~~~~~~--~~~~~~~l-l~~~~~~~~~~~a~~~~~~~~~--~~~~~~~--~li~~~~~~~~~~~a~~~~ 207 (523)
.|+++.|++.+...... ++..+..+ .....+.|+++.|.+.|.++.+ |+..... .....+...|+++.|...+
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l 176 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARHGV 176 (398)
T ss_pred CCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 57777777777665432 22222222 3333677888888888877765 3332222 2356778888888888888
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHcCCCCch-------HHHHHHhhhhhhcCChHHHHHHHHhc
Q 038200 208 REMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNI-------ILDTALIDLYSKCQKVEVAQRVFDSM 280 (523)
Q Consensus 208 ~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~a~~~~~~~ 280 (523)
+++.+.. +-+...+..+...|.+.|++++|..++..+.+.+..++. .+|..++.......+.+...++++.+
T Consensus 177 ~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~l 255 (398)
T PRK10747 177 DKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQ 255 (398)
T ss_pred HHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhC
Confidence 8888764 335667778888888888888888888888887654322 12333344444445567777777777
Q ss_pred CC---CChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhHhcCC
Q 038200 281 AD---RNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKI 357 (523)
Q Consensus 281 ~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 357 (523)
.+ .++.....+...+...|+.++|.+++++..+. +|+.... ++.+....++.+++.+..+...+ ..
T Consensus 256 p~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~-------~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk--~~ 324 (398)
T PRK10747 256 SRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR-------QYDERLV--LLIPRLKTNNPEQLEKVLRQQIK--QH 324 (398)
T ss_pred CHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-------CCCHHHH--HHHhhccCCChHHHHHHHHHHHh--hC
Confidence 54 46778888999999999999999999999884 3555322 23344456899999999999988 45
Q ss_pred CCChHHHHHHHHHHHcCCChHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHhhc
Q 038200 358 KPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDM 427 (523)
Q Consensus 358 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 427 (523)
+-|+..+..+...+.+.|++++|.+.|+.+.+ ..|+...+..+...+...|+.++|.+++++...+
T Consensus 325 P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~----~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~ 390 (398)
T PRK10747 325 GDTPLLWSTLGQLLMKHGEWQEASLAFRAALK----QRPDAYDYAWLADALDRLHKPEEAAAMRRDGLML 390 (398)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh----cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 56778888999999999999999999999995 5798888888999999999999999999998764
No 42
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.61 E-value=1.2e-13 Score=129.80 Aligned_cols=247 Identities=12% Similarity=0.134 Sum_probs=117.3
Q ss_pred chHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHcCC--CCchHHHHHHhhhhhhcCChHHHHHHH
Q 038200 200 PGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSL--KPNIILDTALIDLYSKCQKVEVAQRVF 277 (523)
Q Consensus 200 ~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~ 277 (523)
..+|...|..+... +.-+......+..+|...+++++|..+|+.+.+... --+..+|.+.+--+-+.=.+.---+-+
T Consensus 335 ~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~L 413 (638)
T KOG1126|consen 335 CREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQDL 413 (638)
T ss_pred HHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHHH
Confidence 44555555553332 222334444555555555555555555555554321 013344444433222111111000111
Q ss_pred HhcCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcCC-CHHHHHHHHHHHhhcCcHHHHHHHHHHhhHhcC
Q 038200 278 DSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISP-DEITFIGVICACVRAELLTEGRKYFRQMIDFYK 356 (523)
Q Consensus 278 ~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 356 (523)
-.+....+.+|.++..+|..+++.+.|++.|++.+. +.| ...+|+.+.+-+.....+|.|...|+.....
T Consensus 414 i~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQ-------ldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~-- 484 (638)
T KOG1126|consen 414 IDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQ-------LDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGV-- 484 (638)
T ss_pred HhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhc-------cCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcC--
Confidence 111122445555555555555555555555555555 334 3455555555555555555555555555431
Q ss_pred CCCChHHHHHHHHHHHcCCChHHHHHHHHhCCCCCCCCCc-hHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhhH
Q 038200 357 IKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSF-ESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRY 435 (523)
Q Consensus 357 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 435 (523)
.+-+-..|..|...|.+.++++.|+-.|+++.+ +.| +.++...+...+.+.|+.++|+++++++..++|.++-.-
T Consensus 485 ~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~----INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~ 560 (638)
T KOG1126|consen 485 DPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVE----INPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCK 560 (638)
T ss_pred CchhhHHHHhhhhheeccchhhHHHHHHHhhhc----CCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhH
Confidence 011122223344455555555555555555553 333 233334444445555555555555555555555555555
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHh
Q 038200 436 QFLLNVYAVAGQWEDVARVRELMKK 460 (523)
Q Consensus 436 ~~l~~~~~~~g~~~~A~~~~~~m~~ 460 (523)
...+..+...+++++|+..++++++
T Consensus 561 ~~~~~il~~~~~~~eal~~LEeLk~ 585 (638)
T KOG1126|consen 561 YHRASILFSLGRYVEALQELEELKE 585 (638)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHH
Confidence 5555555555555555555555544
No 43
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.60 E-value=9e-12 Score=112.27 Aligned_cols=285 Identities=11% Similarity=0.034 Sum_probs=153.9
Q ss_pred HHHccCCchHHHHHHHHHHHhCCCCCchHHHHHHHHHHccCChHHHHHHHhhcCCC------CcchHHHHHHHHHhcCCH
Q 038200 96 SCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPR------DLISWNSIVSGHVRSGDM 169 (523)
Q Consensus 96 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~ll~~~~~~~~~ 169 (523)
++-...+.+++.+-.+.....|++-+...-+....+.-...|++.|+.+|+++.+. |..+|..++-.--....+
T Consensus 236 a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skL 315 (559)
T KOG1155|consen 236 AYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKL 315 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHH
Confidence 33444566666666666666666655555555555555667777777777777643 334454444332222222
Q ss_pred HHHHHHHhcCCCCChhHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHcC
Q 038200 170 SAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTS 249 (523)
Q Consensus 170 ~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 249 (523)
.---+....+.+--..|...+.+-|.-.++.++|..+|++.++.+ +-....|+.+..-|....+...|.+-|+.+++..
T Consensus 316 s~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~ 394 (559)
T KOG1155|consen 316 SYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDIN 394 (559)
T ss_pred HHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcC
Confidence 111111111222233455555556666666666666666666643 2234455555566666666666666666666643
Q ss_pred CCCchHHHHHHhhhhhhcCChHHHHHHHHhcCC---CChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcCCCHH
Q 038200 250 LKPNIILDTALIDLYSKCQKVEVAQRVFDSMAD---RNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEI 326 (523)
Q Consensus 250 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~p~~~ 326 (523)
+.|-..|-.|..+|.-.+...-|+-+|++..+ .|...|.+|..+|.+.++.++|++.|.+....| ..+..
T Consensus 395 -p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~------dte~~ 467 (559)
T KOG1155|consen 395 -PRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLG------DTEGS 467 (559)
T ss_pred -chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc------ccchH
Confidence 33555666666666666666666666665533 355666666666666666666666666666654 33445
Q ss_pred HHHHHHHHHhhcCcHHHHHHHHHHhhHhc---C-CCC-ChHHHHHHHHHHHcCCChHHHHHHHHhCC
Q 038200 327 TFIGVICACVRAELLTEGRKYFRQMIDFY---K-IKP-NFAHYWCMANLYAGAELTEEAEEILRKMP 388 (523)
Q Consensus 327 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~---~-~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 388 (523)
.+..|...+-+.++.++|.+.|++..+.. | +.| ......-|..-+.+.+++++|........
T Consensus 468 ~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~ 534 (559)
T KOG1155|consen 468 ALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVL 534 (559)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHh
Confidence 66666666666666666666665554421 1 111 11222224444555555555555444433
No 44
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.58 E-value=5.8e-13 Score=125.40 Aligned_cols=276 Identities=13% Similarity=0.072 Sum_probs=194.4
Q ss_pred CHHHHHHHHhcCCC--CC-hhHHHHHHHHHHhcCCchHHHHHHHHHHHCCC--CCCHHHHHHHHHHHhccccHHHHHHHH
Q 038200 168 DMSAAHELFDIMPE--RN-VVSWNIMISGYSKSGNPGCSLKLFREMMKSGF--RGNDKTMASVLTACGRSARFNEGRSVH 242 (523)
Q Consensus 168 ~~~~a~~~~~~~~~--~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~--~p~~~~~~~ll~~~~~~~~~~~a~~~~ 242 (523)
+..+|..+|..+++ ++ ......+..+|...+++++|.++|+.+.+... .-+..+|++.+..+-+. -+...+
T Consensus 334 ~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~----v~Ls~L 409 (638)
T KOG1126|consen 334 NCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDE----VALSYL 409 (638)
T ss_pred HHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhh----HHHHHH
Confidence 45677777777654 23 34445667788888888888888888876421 12566777777655332 122222
Q ss_pred H-HHHHcCCCCchHHHHHHhhhhhhcCChHHHHHHHHhcCCC---ChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC
Q 038200 243 G-YTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADR---NLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAG 318 (523)
Q Consensus 243 ~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~ 318 (523)
. .+.+. -+..+.+|.++.++|.-.++.+.|++.|++..+- ...+|+.+..-+.....+|.|...|+..+.
T Consensus 410 aq~Li~~-~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~----- 483 (638)
T KOG1126|consen 410 AQDLIDT-DPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALG----- 483 (638)
T ss_pred HHHHHhh-CCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhc-----
Confidence 2 22222 2345788888888888888888888888887663 345677777777778888888888888766
Q ss_pred CCcCCC-HHHHHHHHHHHhhcCcHHHHHHHHHHhhHhcCCCC-ChHHHHHHHHHHHcCCChHHHHHHHHhCCCCCCCCCc
Q 038200 319 GSISPD-EITFIGVICACVRAELLTEGRKYFRQMIDFYKIKP-NFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSF 396 (523)
Q Consensus 319 ~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 396 (523)
+.|+ -..|..+...|.++++++.|+-.|+++.+ +.| +......+...+.+.|+.++|+++++++...+ +-
T Consensus 484 --~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~---INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld---~k 555 (638)
T KOG1126|consen 484 --VDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVE---INPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLD---PK 555 (638)
T ss_pred --CCchhhHHHHhhhhheeccchhhHHHHHHHhhhc---CCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcC---CC
Confidence 3343 34666677788888888888888888876 334 56666777778888888888888888877431 22
Q ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 038200 397 ESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKR 461 (523)
Q Consensus 397 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 461 (523)
|+..-..-+..+...+++++|...++++.++-|++..+|..++..|.+.|+.+.|+.-|.-+.+.
T Consensus 556 n~l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~l 620 (638)
T KOG1126|consen 556 NPLCKYHRASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDL 620 (638)
T ss_pred CchhHHHHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcC
Confidence 34444444555677788888888888888888888888888888888888888888887777554
No 45
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.58 E-value=1.6e-14 Score=131.96 Aligned_cols=253 Identities=12% Similarity=0.067 Sum_probs=100.8
Q ss_pred HHHHHHccCCchHHHHHHHHHHHhC-CCCCchHHHHHHHHHHccCChHHHHHHHhhcCCC---CcchHHHHHHHHHhcCC
Q 038200 93 LFGSCAKTGCVERGGMCHGLALKNG-VDFELPVMNSLINMYGCFGAMDCARNMFVQMSPR---DLISWNSIVSGHVRSGD 168 (523)
Q Consensus 93 ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~ll~~~~~~~~ 168 (523)
+...+.+.|++++|.++++...... .+.+...|..+...+...++++.|.+.++++... +...+..++.. ...++
T Consensus 14 ~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~~~~~ 92 (280)
T PF13429_consen 14 LARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQL-LQDGD 92 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccc
Confidence 3444555566666666664433332 2224444444555555556666666666665522 23344444444 46666
Q ss_pred HHHHHHHHhcCCC--CChhHHHHHHHHHHhcCCchHHHHHHHHHHHCC-CCCCHHHHHHHHHHHhccccHHHHHHHHHHH
Q 038200 169 MSAAHELFDIMPE--RNVVSWNIMISGYSKSGNPGCSLKLFREMMKSG-FRGNDKTMASVLTACGRSARFNEGRSVHGYT 245 (523)
Q Consensus 169 ~~~a~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 245 (523)
+++|.+++...-+ ++...+..++..+.+.++++++.++++.+.... .+.+...|..+...+.+.|+.++|...+++.
T Consensus 93 ~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~a 172 (280)
T PF13429_consen 93 PEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKA 172 (280)
T ss_dssp -------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred ccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 6777666655532 455667777788888888888888888876543 2456667778888888888888888888888
Q ss_pred HHcCCCCchHHHHHHhhhhhhcCChHHHHHHHHhcC---CCChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcC
Q 038200 246 VRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMA---DRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSIS 322 (523)
Q Consensus 246 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~ 322 (523)
++.. |.+..+.+.++..+...|+.+++.+++.... ..|...|..+..+|...|+.++|+.+|++..+.. +
T Consensus 173 l~~~-P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~------p 245 (280)
T PF13429_consen 173 LELD-PDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN------P 245 (280)
T ss_dssp HHH--TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS------T
T ss_pred HHcC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccccccccc------c
Confidence 8874 2357777888888888888888666665553 3466778888888888899999999999888853 3
Q ss_pred CCHHHHHHHHHHHhhcCcHHHHHHHHHHhhH
Q 038200 323 PDEITFIGVICACVRAELLTEGRKYFRQMID 353 (523)
Q Consensus 323 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 353 (523)
.|......+..++...|+.++|.++.+++.+
T Consensus 246 ~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 246 DDPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp T-HHHHHHHHHHHT-----------------
T ss_pred ccccccccccccccccccccccccccccccc
Confidence 4677778888888889999999888877654
No 46
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.57 E-value=3.8e-11 Score=116.52 Aligned_cols=427 Identities=11% Similarity=0.069 Sum_probs=270.8
Q ss_pred HHHHHHHHhCCCCCChhHHHHHHHHhhccCCchhHHHHhccCCC----CCcccHHHHHHHHHhCCCchHHHHHHHHHHHC
Q 038200 6 QIQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINN----PGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKN 81 (523)
Q Consensus 6 ~i~~~~~~~g~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~ 81 (523)
..+..+.+.|+. |+..+|.+||..|+..|+++.|- +|..|.- -+...++.++.+..+.++.+.+.
T Consensus 11 nfla~~e~~gi~-PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk--------- 79 (1088)
T KOG4318|consen 11 NFLALHEISGIL-PNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK--------- 79 (1088)
T ss_pred hHHHHHHHhcCC-CchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC---------
Confidence 578889999999 99999999999999999999998 8887763 35667899999988888887765
Q ss_pred CCCCCcccHHHHHHHHHccCCchH---HHHHHHHHH----HhCCCC--------------CchHHHHHHHHHHccCChHH
Q 038200 82 GFMPNSYTFVSLFGSCAKTGCVER---GGMCHGLAL----KNGVDF--------------ELPVMNSLINMYGCFGAMDC 140 (523)
Q Consensus 82 ~~~p~~~~~~~ll~~~~~~~~~~~---a~~~~~~~~----~~~~~~--------------~~~~~~~l~~~~~~~g~~~~ 140 (523)
.|...||..|+.+|...||+.. +.+.+..+. ..|+.. ....-..++....-.|-++.
T Consensus 80 --ep~aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaq 157 (1088)
T KOG4318|consen 80 --EPLADTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQ 157 (1088)
T ss_pred --CCchhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHH
Confidence 6888899999999999998754 333222221 122210 11112233344455677788
Q ss_pred HHHHHhhcCCC--CcchHHHHHHHHHh-cCCHHHHHHHHhcCCC-CChhHHHHHHHHHHhcCCchHHHHHHHHHHHCCCC
Q 038200 141 ARNMFVQMSPR--DLISWNSIVSGHVR-SGDMSAAHELFDIMPE-RNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFR 216 (523)
Q Consensus 141 A~~~~~~~~~~--~~~~~~~ll~~~~~-~~~~~~a~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~ 216 (523)
+++++..++.. +. +..-+++-+.. ...+++-..+.....+ ++..+|..++.+-..+|+.+.|..++.+|.+.|++
T Consensus 158 llkll~~~Pvsa~~~-p~~vfLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfp 236 (1088)
T KOG4318|consen 158 LLKLLAKVPVSAWNA-PFQVFLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFP 236 (1088)
T ss_pred HHHHHhhCCcccccc-hHHHHHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCC
Confidence 88888777621 11 11112332222 2233444444444444 77788888888888888888888888888888887
Q ss_pred CCHHHHHHHHHHHhccccHHHHHHHHHHHHHcCCCCchHHHHHHhhhhhhcCCh--------------------------
Q 038200 217 GNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKV-------------------------- 270 (523)
Q Consensus 217 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-------------------------- 270 (523)
.+.+-|..++-+ .++...+..++.-|...|+.|+..|+...+..+...|..
T Consensus 237 ir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e~sq~~hg~tAavrsaa~rg~~ 313 (1088)
T KOG4318|consen 237 IRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEEGSQLAHGFTAAVRSAACRGLL 313 (1088)
T ss_pred cccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhcccccchhhhhhHHHHHHHhcccH
Confidence 777777766654 666777777777777778887777766544444332221
Q ss_pred --------------------------------------------HHHHHHHHhcCC-------CChHHHHHHHHHHHhcC
Q 038200 271 --------------------------------------------EVAQRVFDSMAD-------RNLVCWNAMILGHCIHG 299 (523)
Q Consensus 271 --------------------------------------------~~a~~~~~~~~~-------~~~~~~~~li~~~~~~g 299 (523)
+..+++...+.. .++..|..++.
T Consensus 314 a~k~l~~nl~~~v~~s~k~~fLlg~d~~~aiws~c~~l~hQgk~e~veqlvg~l~npt~r~s~~~V~a~~~~lr------ 387 (1088)
T KOG4318|consen 314 ANKRLRQNLRKSVIGSTKKLFLLGTDILEAIWSMCEKLRHQGKGEEVEQLVGQLLNPTLRDSGQNVDAFGALLR------ 387 (1088)
T ss_pred hHHHHHHHHHHHHHHHhhHHHHhccccchHHHHHHHHHHHcCCCchHHHHHhhhcCCccccCcchHHHHHHHHH------
Confidence 111111111100 01112222222
Q ss_pred ChHHHHHHHHHHHhCCCCC------------------------CCcCCCH----------------------------HH
Q 038200 300 KPEEGIKLFTALVNGTVAG------------------------GSISPDE----------------------------IT 327 (523)
Q Consensus 300 ~~~~a~~~~~~m~~~~~~~------------------------~~~~p~~----------------------------~~ 327 (523)
++|.+........ ....||. ..
T Consensus 388 ------qyFrr~e~~~~~~i~~~~qgls~~l~se~tp~vsell~~lrkns~lr~lv~Lss~Eler~he~~~~~~h~irdi 461 (1088)
T KOG4318|consen 388 ------QYFRRIERHICSRIYYAGQGLSLNLNSEDTPRVSELLENLRKNSFLRQLVGLSSTELERSHEPWPLIAHLIRDI 461 (1088)
T ss_pred ------HHHHHHHhhHHHHHHHHHHHHHhhhchhhhHHHHHHHHHhCcchHHHHHhhhhHHHHhcccccchhhhhHHHHH
Confidence 2222221110000 0001111 11
Q ss_pred HHHHHHHHhhcCcHHHHHHHHHHhhHhcCCCCChHHHHHHHHHHHcCCChHHHHHHHHhCCCCCCCCCchHHHHHHHHHH
Q 038200 328 FIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSL 407 (523)
Q Consensus 328 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~ 407 (523)
-+.++..|+..-+..+++..-++.... -+ +..|..||+.++...+.+.|..+..+....+..+..|...+..+...
T Consensus 462 ~~ql~l~l~se~n~lK~l~~~ekye~~-lf---~g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dL 537 (1088)
T KOG4318|consen 462 ANQLHLTLNSEYNKLKILCDEEKYEDL-LF---AGLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDL 537 (1088)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-Hh---hhHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHHH
Confidence 233344444444444444333333331 11 26788999999999999999999999986666666777788888888
Q ss_pred HHhcCCHHHHHHHHHHHhh---cCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCcc
Q 038200 408 CRFQGAVAMVERLAKSFVD---MDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGR 465 (523)
Q Consensus 408 ~~~~g~~~~a~~~~~~~~~---~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~ 465 (523)
..+.+....+..+++.+.+ ..|....++..+.+.....|..+...++++-+...|+..
T Consensus 538 L~r~~~l~dl~tiL~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lvslgl~e 598 (1088)
T KOG4318|consen 538 LQRLAILYDLSTILYEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILVSLGLSE 598 (1088)
T ss_pred HHHhHHHHHHHHHHhhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhh
Confidence 8999999999999888876 334345567777888888999999999999999988877
No 47
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.56 E-value=9.3e-12 Score=119.76 Aligned_cols=284 Identities=12% Similarity=0.082 Sum_probs=152.1
Q ss_pred cCCHHHHHHHHhcCCC--CC-hhHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCH--HHHHHHHHHHhccccHHHHHH
Q 038200 166 SGDMSAAHELFDIMPE--RN-VVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGND--KTMASVLTACGRSARFNEGRS 240 (523)
Q Consensus 166 ~~~~~~a~~~~~~~~~--~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~--~~~~~ll~~~~~~~~~~~a~~ 240 (523)
.|+++.|.+.+.+..+ |+ ...+-....++.+.|+++.|.+++.+..+.. |+. .........+...|+++.|..
T Consensus 97 ~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~--p~~~l~~~~~~a~l~l~~~~~~~Al~ 174 (409)
T TIGR00540 97 EGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELA--GNDNILVEIARTRILLAQNELHAARH 174 (409)
T ss_pred CCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CcCchHHHHHHHHHHHHCCCHHHHHH
Confidence 4555555555544433 22 1222233344555566666666665554432 222 122223444555566666666
Q ss_pred HHHHHHHcCCCCchHHHHHHhhhhhhcCChHHHHHHHHhcCCC---ChHHHH----HHHHHHHhcCChHHHHHHHHHHHh
Q 038200 241 VHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADR---NLVCWN----AMILGHCIHGKPEEGIKLFTALVN 313 (523)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~----~li~~~~~~g~~~~a~~~~~~m~~ 313 (523)
.++.+.+.. |-+..+...+...+...|+++.|.+.+..+.+. +...+. .....+...+..+++.+.+..+..
T Consensus 175 ~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~ 253 (409)
T TIGR00540 175 GVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWK 253 (409)
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 666555553 224445555555666666666665555555431 111111 111111222222323334444443
Q ss_pred CCCCCCCcCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhHhcCCCCChHH--HHHHHHHHHcCCChHHHHHHHHhCCCCC
Q 038200 314 GTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAH--YWCMANLYAGAELTEEAEEILRKMPEDN 391 (523)
Q Consensus 314 ~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 391 (523)
... ...+.+...+..+...+...|+.++|.+++++..+. .+.+... ...........++.+.+.+.+++..+.
T Consensus 254 ~~p--~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~--~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~- 328 (409)
T TIGR00540 254 NQP--RHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK--LGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKN- 328 (409)
T ss_pred HCC--HHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh--CCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHh-
Confidence 220 001125667777777788888888888888887773 2222211 111112223356777788888777653
Q ss_pred CCCCchH--HHHHHHHHHHHhcCCHHHHHHHHH--HHhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 038200 392 DNMSFES--IMWVSLLSLCRFQGAVAMVERLAK--SFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKK 460 (523)
Q Consensus 392 ~~~~~~~--~~~~~l~~~~~~~g~~~~a~~~~~--~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 460 (523)
.+-|+ ....++...|.+.|++++|.+.|+ ...+..| ++..+..++.++.+.|+.++|.+++++-..
T Consensus 329 --~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p-~~~~~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 329 --VDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQL-DANDLAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred --CCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 12233 556677778888888888888888 4556667 444577888888888888888888886533
No 48
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.56 E-value=1.9e-11 Score=117.61 Aligned_cols=279 Identities=8% Similarity=-0.006 Sum_probs=189.1
Q ss_pred ccCChHHHHHHHhhcCC--CCc-chHHHHHHHHHhcCCHHHHHHHHhcCCC--CCh--hHHHHHHHHHHhcCCchHHHHH
Q 038200 134 CFGAMDCARNMFVQMSP--RDL-ISWNSIVSGHVRSGDMSAAHELFDIMPE--RNV--VSWNIMISGYSKSGNPGCSLKL 206 (523)
Q Consensus 134 ~~g~~~~A~~~~~~~~~--~~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~--~~~--~~~~~li~~~~~~~~~~~a~~~ 206 (523)
..|+++.|.+.+.+..+ |+. ..+-....+..+.|+.+.|.+.+.+..+ |+. ...-.....+...|+++.|...
T Consensus 96 ~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~ 175 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARHG 175 (409)
T ss_pred hCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHH
Confidence 35666666666655542 221 2222333445566777777777766533 332 2333346677788888888888
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHcCCCCchHHHHHHhhhh---h----hcCChHHHHHHHHh
Q 038200 207 FREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLY---S----KCQKVEVAQRVFDS 279 (523)
Q Consensus 207 ~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~---~----~~~~~~~a~~~~~~ 279 (523)
++.+.+.. +-+...+..+...+...|+++.|.+.+..+.+.+..+.......-..++ . .....+...+.+..
T Consensus 176 l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~ 254 (409)
T TIGR00540 176 VDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKN 254 (409)
T ss_pred HHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 88888864 3355677788888888888888888888888876543322211111111 2 22223444555555
Q ss_pred cCC---CChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcCCCHHHH---HHHHHHHhhcCcHHHHHHHHHHhhH
Q 038200 280 MAD---RNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITF---IGVICACVRAELLTEGRKYFRQMID 353 (523)
Q Consensus 280 ~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~p~~~~~---~~ll~~~~~~~~~~~a~~~~~~~~~ 353 (523)
..+ .+...+..+...+...|+.++|.+++++..+.. ||.... ..........++.+.+.+.+++..+
T Consensus 255 ~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~-------pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk 327 (409)
T TIGR00540 255 QPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL-------GDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAK 327 (409)
T ss_pred CCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC-------CCcccchhHHHHHhhhcCCCChHHHHHHHHHHHH
Confidence 543 377888889999999999999999999999854 554421 1222223445788889999988887
Q ss_pred hcCCCCCh--HHHHHHHHHHHcCCChHHHHHHHHh--CCCCCCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 038200 354 FYKIKPNF--AHYWCMANLYAGAELTEEAEEILRK--MPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVD 426 (523)
Q Consensus 354 ~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 426 (523)
. .+-|+ ....++...+.+.|++++|.+.|+. ..+ ..|+...+..+...+...|+.++|.+++++...
T Consensus 328 ~--~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~----~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 328 N--VDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACK----EQLDANDLAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred h--CCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhh----cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4 33344 6777899999999999999999994 442 478888888889999999999999999998765
No 49
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.49 E-value=1e-10 Score=100.91 Aligned_cols=266 Identities=12% Similarity=0.157 Sum_probs=137.2
Q ss_pred CCchHHHHHHHHHHHCCCCCCcccHHHHHHHHHccCCchHHHHHHHHHHHhCCCCCchHHHHHHHHHHccCChHHHHHHH
Q 038200 66 CVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMF 145 (523)
Q Consensus 66 ~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 145 (523)
.+.++|+++|-+|.+.+ +-+..+-.+|.+.|-+.|..+.|+++++.+.++ ||...-..+.
T Consensus 49 ~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s---pdlT~~qr~l---------------- 108 (389)
T COG2956 49 NQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES---PDLTFEQRLL---------------- 108 (389)
T ss_pred cCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC---CCCchHHHHH----------------
Confidence 45556666666665532 222234444555555555666666555555442 2221111111
Q ss_pred hhcCCCCcchHHHHHHHHHhcCCHHHHHHHHhcCCC-C--ChhHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCH---
Q 038200 146 VQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPE-R--NVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGND--- 219 (523)
Q Consensus 146 ~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-~--~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~--- 219 (523)
....+..-|...|-+|.|+.+|..+.+ + -......|+..|-...+|++|+++-+++.+.+-.+..
T Consensus 109 ---------Al~qL~~Dym~aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eI 179 (389)
T COG2956 109 ---------ALQQLGRDYMAAGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEI 179 (389)
T ss_pred ---------HHHHHHHHHHHhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHH
Confidence 111223334555556666666655554 1 2334555677777777777777777777766544432
Q ss_pred -HHHHHHHHHHhccccHHHHHHHHHHHHHcCCCCchHHHHHHhhhhhhcCChHHHHHHHHhcCCCCh----HHHHHHHHH
Q 038200 220 -KTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNL----VCWNAMILG 294 (523)
Q Consensus 220 -~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----~~~~~li~~ 294 (523)
..|.-+...+....+.+.|...+.+..+.+. ..+..--.+.+.+...|+++.|.+.++.+.+.|. .+...|..+
T Consensus 180 AqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~-~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~ 258 (389)
T COG2956 180 AQFYCELAQQALASSDVDRARELLKKALQADK-KCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYEC 258 (389)
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCc-cceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHH
Confidence 2344455555556666777777776666542 2334444455666666666666666666655443 244555566
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCCCcCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhHhcCCCCChHHHHHHHHHH
Q 038200 295 HCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLY 371 (523)
Q Consensus 295 ~~~~g~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 371 (523)
|.+.|+.++....+.++.+.. +....-..+........-.+.|..++.+-.. -+|+...+..|+..-
T Consensus 259 Y~~lg~~~~~~~fL~~~~~~~-------~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~---r~Pt~~gf~rl~~~~ 325 (389)
T COG2956 259 YAQLGKPAEGLNFLRRAMETN-------TGADAELMLADLIELQEGIDAAQAYLTRQLR---RKPTMRGFHRLMDYH 325 (389)
T ss_pred HHHhCCHHHHHHHHHHHHHcc-------CCccHHHHHHHHHHHhhChHHHHHHHHHHHh---hCCcHHHHHHHHHhh
Confidence 666666666666666666533 3322223333322333333444433333322 146666666665544
No 50
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.49 E-value=1.7e-10 Score=106.89 Aligned_cols=268 Identities=12% Similarity=-0.000 Sum_probs=211.8
Q ss_pred ChhHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHcCCCCchHHHHHHhh
Q 038200 183 NVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALID 262 (523)
Q Consensus 183 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 262 (523)
+......-..-+...+++.+..++.+...+.. ++....+..-|.++...|+..+-..+=..+++.- |....+|-++.-
T Consensus 243 ~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y-P~~a~sW~aVg~ 320 (611)
T KOG1173|consen 243 NLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY-PSKALSWFAVGC 320 (611)
T ss_pred cHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCCcchhhHHH
Confidence 44455555667778899999999999998864 6666777777778888888887777777777763 446788889998
Q ss_pred hhhhcCChHHHHHHHHhcCCCCh---HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcCCCHHHHHHHHHHHhhcC
Q 038200 263 LYSKCQKVEVAQRVFDSMADRNL---VCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAE 339 (523)
Q Consensus 263 ~~~~~~~~~~a~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~ll~~~~~~~ 339 (523)
.|...|+..+|.++|.+...-|. ..|-.+..+|+-.|..+.|+..+....+.- +-...-+.-+..-|.+.+
T Consensus 321 YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~------~G~hlP~LYlgmey~~t~ 394 (611)
T KOG1173|consen 321 YYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLM------PGCHLPSLYLGMEYMRTN 394 (611)
T ss_pred HHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhc------cCCcchHHHHHHHHHHhc
Confidence 89999999999999998765433 579999999999999999999998877641 112222333445678889
Q ss_pred cHHHHHHHHHHhhHhcCCCCChHHHHHHHHHHHcCCChHHHHHHHHhCCCCCCCCCc----hHHHHHHHHHHHHhcCCHH
Q 038200 340 LLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSF----ESIMWVSLLSLCRFQGAVA 415 (523)
Q Consensus 340 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~ 415 (523)
+.+.|.++|.+... -.+.|+..++-+.-+....+.+.+|..+|+..+..-....+ -..+++.|..+|++.+.++
T Consensus 395 n~kLAe~Ff~~A~a--i~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~ 472 (611)
T KOG1173|consen 395 NLKLAEKFFKQALA--IAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYE 472 (611)
T ss_pred cHHHHHHHHHHHHh--cCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHH
Confidence 99999999999986 34456788888888888889999999999877622111111 2457888889999999999
Q ss_pred HHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 038200 416 MVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKK 460 (523)
Q Consensus 416 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 460 (523)
+|...+++++.+.|.++.+|..++-+|...|+++.|++.|.+..-
T Consensus 473 eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~ 517 (611)
T KOG1173|consen 473 EAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALA 517 (611)
T ss_pred HHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999987643
No 51
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.48 E-value=1.6e-10 Score=102.68 Aligned_cols=280 Identities=10% Similarity=0.077 Sum_probs=176.5
Q ss_pred cCCHHHHHHHHhcCCC---CChhHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHH
Q 038200 166 SGDMSAAHELFDIMPE---RNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVH 242 (523)
Q Consensus 166 ~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 242 (523)
.|++..|++...+-.+ .....|..-+.+.-+.|+.+.+-.++.+.-+.--.++...+.+........|+...|..-.
T Consensus 97 eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v 176 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENV 176 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHH
Confidence 3555556555555433 1222333344455556666666666666655422344444555555566666666666666
Q ss_pred HHHHHcCCCCchHHHHHHhhhhhhcCChHHHHHHHHhcCCCC-----------hHHHHHHHHHHHhcCChHHHHHHHHHH
Q 038200 243 GYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRN-----------LVCWNAMILGHCIHGKPEEGIKLFTAL 311 (523)
Q Consensus 243 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----------~~~~~~li~~~~~~g~~~~a~~~~~~m 311 (523)
.++.+.+. .++.+......+|.+.|++.....++..+.+.. ..+|+.+++-....+..+.-...|++.
T Consensus 177 ~~ll~~~p-r~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~ 255 (400)
T COG3071 177 DQLLEMTP-RHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQ 255 (400)
T ss_pred HHHHHhCc-CChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhc
Confidence 66665542 245556666666666666666666666665421 235666666666666666666677666
Q ss_pred HhCCCCCCCcCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhHhcCCCCChHHHHHHHHHHHcCCChHHHHHHHHhCCCCC
Q 038200 312 VNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDN 391 (523)
Q Consensus 312 ~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 391 (523)
..+ .+-++..-.+++.-+.+.|+.++|.++..+..+. +..|+. ...-...+-++.+.-++..++....
T Consensus 256 pr~------lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~-~~D~~L----~~~~~~l~~~d~~~l~k~~e~~l~~- 323 (400)
T COG3071 256 PRK------LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKR-QWDPRL----CRLIPRLRPGDPEPLIKAAEKWLKQ- 323 (400)
T ss_pred cHH------hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHh-ccChhH----HHHHhhcCCCCchHHHHHHHHHHHh-
Confidence 554 3455666677777778888888888888887775 666551 1122334556666666665555533
Q ss_pred CCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 038200 392 DNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKR 461 (523)
Q Consensus 392 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 461 (523)
.+.++..+.++...|.+++.+.+|..+++.+.+..| +...|..++.++.+.|+..+|.+++++-...
T Consensus 324 --h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~-s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~ 390 (400)
T COG3071 324 --HPEDPLLLSTLGRLALKNKLWGKASEALEAALKLRP-SASDYAELADALDQLGEPEEAEQVRREALLL 390 (400)
T ss_pred --CCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCC-ChhhHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 233446777788888888888888888888888877 5668888888888888888888888776543
No 52
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.45 E-value=7.3e-10 Score=100.87 Aligned_cols=388 Identities=11% Similarity=-0.024 Sum_probs=252.7
Q ss_pred HHHHHHhhccCCchhHHHHhccCC--CCC-cccHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCcc-cHHHHHHHHHcc
Q 038200 25 INLLKHSADFGSPDYTVLVFKCIN--NPG-TFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSY-TFVSLFGSCAKT 100 (523)
Q Consensus 25 ~~l~~~~~~~g~~~~A~~~~~~~~--~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~ 100 (523)
...-+-|-+.|++++|++.+.... .|+ .+-|...-.+|...|+++++++--...++. .|+-. .+..=..++-..
T Consensus 119 K~~GN~~f~~kkY~eAIkyY~~AI~l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl--~P~Y~KAl~RRA~A~E~l 196 (606)
T KOG0547|consen 119 KTKGNKFFRNKKYDEAIKYYTQAIELCPDEPIFYSNRAACYESLGDWEKVIEDCTKALEL--NPDYVKALLRRASAHEQL 196 (606)
T ss_pred HhhhhhhhhcccHHHHHHHHHHHHhcCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhc--CcHHHHHHHHHHHHHHhh
Confidence 344456778899999999999875 477 777888999999999999999888887764 56532 444445556666
Q ss_pred CCchHHHHHHHHHHH-hCCCCCchHHHHHHHHHHccCChHHHHHHHhhcCCC---CcchHHHHHHH--------------
Q 038200 101 GCVERGGMCHGLALK-NGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPR---DLISWNSIVSG-------------- 162 (523)
Q Consensus 101 ~~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~ll~~-------------- 162 (523)
|++++|+.=..-.-- .|+. +..+--.+=+.+-+.| ...+.+-+.+-.+| +....++....
T Consensus 197 g~~~eal~D~tv~ci~~~F~-n~s~~~~~eR~Lkk~a-~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~~~ 274 (606)
T KOG0547|consen 197 GKFDEALFDVTVLCILEGFQ-NASIEPMAERVLKKQA-MKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDNKSD 274 (606)
T ss_pred ccHHHHHHhhhHHHHhhhcc-cchhHHHHHHHHHHHH-HHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccCCCc
Confidence 777766532221111 1111 2211111111111111 12222222211111 11111111111
Q ss_pred ---------HH--hcC---CHHHHHHHHhcCC-------CC---C------hhHHHHHHHHHHhcCCchHHHHHHHHHHH
Q 038200 163 ---------HV--RSG---DMSAAHELFDIMP-------ER---N------VVSWNIMISGYSKSGNPGCSLKLFREMMK 212 (523)
Q Consensus 163 ---------~~--~~~---~~~~a~~~~~~~~-------~~---~------~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 212 (523)
+. ..+ .+..|...+.+-. .. | ..+.......+.-.|+.-.|..-|+..++
T Consensus 275 ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~ 354 (606)
T KOG0547|consen 275 KSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAIK 354 (606)
T ss_pred cchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHHh
Confidence 10 011 2333333332211 01 1 11222222234557889999999999998
Q ss_pred CCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHcCCCCchHHHHHHhhhhhhcCChHHHHHHHHhcCCC---ChHHHH
Q 038200 213 SGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADR---NLVCWN 289 (523)
Q Consensus 213 ~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~ 289 (523)
....++. .|--+...|....+.++....|....+.+. .+..+|..-..++.-.++++.|..-|++...- ++..|-
T Consensus 355 l~~~~~~-lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp-~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe~~~~~i 432 (606)
T KOG0547|consen 355 LDPAFNS-LYIKRAAAYADENQSEKMWKDFNKAEDLDP-ENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPENAYAYI 432 (606)
T ss_pred cCcccch-HHHHHHHHHhhhhccHHHHHHHHHHHhcCC-CCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChhhhHHHH
Confidence 7544333 377777889999999999999999999763 36777877788888889999999999998763 445666
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhHhc----CCCCChH--H
Q 038200 290 AMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFY----KIKPNFA--H 363 (523)
Q Consensus 290 ~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~----~~~~~~~--~ 363 (523)
.+.-+..+.+++++++..|++.++. ++-.+..|+.....+..+++++.|.+.|+...+.- ++..+.. +
T Consensus 433 Ql~~a~Yr~~k~~~~m~~Fee~kkk------FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV 506 (606)
T KOG0547|consen 433 QLCCALYRQHKIAESMKTFEEAKKK------FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLV 506 (606)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh------CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhh
Confidence 6666777889999999999999986 45557899999999999999999999999988631 1111222 2
Q ss_pred HHHHHHHHHcCCChHHHHHHHHhCCCCCCCCCc-hHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCC
Q 038200 364 YWCMANLYAGAELTEEAEEILRKMPEDNDNMSF-ESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDP 429 (523)
Q Consensus 364 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p 429 (523)
-..++..- -.+++..|.+++++..+ +.| ....+..|...-.+.|+.++|.++|++...+-.
T Consensus 507 ~Ka~l~~q-wk~d~~~a~~Ll~KA~e----~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~lAr 568 (606)
T KOG0547|consen 507 HKALLVLQ-WKEDINQAENLLRKAIE----LDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQLAR 568 (606)
T ss_pred hhhHhhhc-hhhhHHHHHHHHHHHHc----cCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 22333222 34899999999999996 445 467788888889999999999999999887544
No 53
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.45 E-value=3.4e-11 Score=107.21 Aligned_cols=199 Identities=13% Similarity=0.031 Sum_probs=153.7
Q ss_pred hHHHHHHhhhhhhcCChHHHHHHHHhcCC---CChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcCCCHHHHHH
Q 038200 254 IILDTALIDLYSKCQKVEVAQRVFDSMAD---RNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIG 330 (523)
Q Consensus 254 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~ 330 (523)
...+..+...+...|++++|...+++..+ .+...+..+...+...|++++|.+.+++..... +.+...+..
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~------~~~~~~~~~ 104 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLN------PNNGDVLNN 104 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC------CCCHHHHHH
Confidence 45566667777777777777777776543 245667777888888888888888888888754 334567777
Q ss_pred HHHHHhhcCcHHHHHHHHHHhhHhcCCCCChHHHHHHHHHHHcCCChHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHh
Q 038200 331 VICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRF 410 (523)
Q Consensus 331 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 410 (523)
+...+...|++++|...++++............+..+...+...|++++|.+.+++.... .+.+...+..+...+..
T Consensus 105 ~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~~la~~~~~ 181 (234)
T TIGR02521 105 YGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQI---DPQRPESLLELAELYYL 181 (234)
T ss_pred HHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CcCChHHHHHHHHHHHH
Confidence 788888889999999999988764122234556777888889999999999999988753 22345667777888889
Q ss_pred cCCHHHHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 038200 411 QGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKR 461 (523)
Q Consensus 411 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 461 (523)
.|++++|...++++.+..|.++..+..++.++...|+.++|..+.+.+...
T Consensus 182 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 232 (234)
T TIGR02521 182 RGQYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKL 232 (234)
T ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 999999999999999888878888888899999999999999988877543
No 54
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.44 E-value=1.5e-10 Score=99.92 Aligned_cols=267 Identities=10% Similarity=0.074 Sum_probs=142.2
Q ss_pred HHHHHHHhcCCchHHHHHHHHHHHCCCCCC---HHHHHHHHHHHhccccHHHHHHHHHHHHHcCCCCchHHHHHHhhhhh
Q 038200 189 IMISGYSKSGNPGCSLKLFREMMKSGFRGN---DKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYS 265 (523)
Q Consensus 189 ~li~~~~~~~~~~~a~~~~~~m~~~~~~p~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 265 (523)
+|.+.|.+.|..+.|+.+-+.+.++.--+. ....-.|..-|...|-+|.|+.+|..+.+.+ ..-......|+..|-
T Consensus 74 tLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE~~f~~L~de~-efa~~AlqqLl~IYQ 152 (389)
T COG2956 74 TLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAEDIFNQLVDEG-EFAEGALQQLLNIYQ 152 (389)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhcch-hhhHHHHHHHHHHHH
Confidence 344444455555555554444443210000 0112223333444455555555555554432 112334444555555
Q ss_pred hcCChHHHHHHHHhcCCCC--------hHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcCCCHH-HHHHHHHHHh
Q 038200 266 KCQKVEVAQRVFDSMADRN--------LVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEI-TFIGVICACV 336 (523)
Q Consensus 266 ~~~~~~~a~~~~~~~~~~~--------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~p~~~-~~~~ll~~~~ 336 (523)
...+|++|+++-+++.+-+ ...|.-+...+....+.+.|..++.+..... |..+ .=..+.+...
T Consensus 153 ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~-------~~cvRAsi~lG~v~~ 225 (389)
T COG2956 153 ATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQAD-------KKCVRASIILGRVEL 225 (389)
T ss_pred HhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhC-------ccceehhhhhhHHHH
Confidence 5555555555554443211 1234445555556667777777777776643 4333 2233445666
Q ss_pred hcCcHHHHHHHHHHhhHhcCCCCChHHHHHHHHHHHcCCChHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHhcCCHHH
Q 038200 337 RAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAM 416 (523)
Q Consensus 337 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 416 (523)
..|+++.|.+.|+.+.+. +..--+.+...|..+|...|+.++....+.++.+...| ......+...-....-.+.
T Consensus 226 ~~g~y~~AV~~~e~v~eQ-n~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g----~~~~l~l~~lie~~~G~~~ 300 (389)
T COG2956 226 AKGDYQKAVEALERVLEQ-NPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTG----ADAELMLADLIELQEGIDA 300 (389)
T ss_pred hccchHHHHHHHHHHHHh-ChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCC----ccHHHHHHHHHHHhhChHH
Confidence 777777777777777764 33333556667777777777777777777777654322 2222333333333334566
Q ss_pred HHHHHHHHhhcCCCChhhHHHHHHHHH---hcCChhHHHHHHHHHHhCCCccCCce
Q 038200 417 VERLAKSFVDMDPQDFSRYQFLLNVYA---VAGQWEDVARVRELMKKRRMGRMPGC 469 (523)
Q Consensus 417 a~~~~~~~~~~~p~~~~~~~~l~~~~~---~~g~~~~A~~~~~~m~~~~~~~~~~~ 469 (523)
|..++.+-+...| +...+..|+..-. ..|++.+....++.|....++..|..
T Consensus 301 Aq~~l~~Ql~r~P-t~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvge~l~~~~~Y 355 (389)
T COG2956 301 AQAYLTRQLRRKP-TMRGFHRLMDYHLADAEEGRAKESLDLLRDMVGEQLRRKPRY 355 (389)
T ss_pred HHHHHHHHHhhCC-cHHHHHHHHHhhhccccccchhhhHHHHHHHHHHHHhhcCCc
Confidence 6666666666667 3444555554433 23567777788888877767776654
No 55
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.43 E-value=1e-11 Score=106.88 Aligned_cols=231 Identities=11% Similarity=0.030 Sum_probs=196.2
Q ss_pred HHHHHHHHHhccccHHHHHHHHHHHHHcCCCCchHHHHHHhhhhhhcCChHHHHHHHHhcCC--CChHH-HHHHHHHHHh
Q 038200 221 TMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMAD--RNLVC-WNAMILGHCI 297 (523)
Q Consensus 221 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~-~~~li~~~~~ 297 (523)
.-..+.++|.+.|.+.+|...++..++. .|-+.+|..|..+|.+..+++.|+.+|.+-.+ |..+| ..-+...+-.
T Consensus 225 Wk~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~ea 302 (478)
T KOG1129|consen 225 WKQQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEA 302 (478)
T ss_pred HHHHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHH
Confidence 3467889999999999999999988886 35677888899999999999999999998765 44444 4456777888
Q ss_pred cCChHHHHHHHHHHHhCCCCCCCcCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhHhcCCCCChHHHHHHHHHHHcCCCh
Q 038200 298 HGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELT 377 (523)
Q Consensus 298 ~g~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 377 (523)
.++.++|.++|+...+.. +.+.....++...|.-.++.+.|+.+|+++.+. |+. ++..|..+.-+|.-.+++
T Consensus 303 m~~~~~a~~lYk~vlk~~------~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqm-G~~-speLf~NigLCC~yaqQ~ 374 (478)
T KOG1129|consen 303 MEQQEDALQLYKLVLKLH------PINVEAIACIAVGYFYDNNPEMALRYYRRILQM-GAQ-SPELFCNIGLCCLYAQQI 374 (478)
T ss_pred HHhHHHHHHHHHHHHhcC------CccceeeeeeeeccccCCChHHHHHHHHHHHHh-cCC-ChHHHhhHHHHHHhhcch
Confidence 899999999999999864 445667777778888899999999999999996 765 788999999999999999
Q ss_pred HHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHH
Q 038200 378 EEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVREL 457 (523)
Q Consensus 378 ~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 457 (523)
+-++.-|++.............+|..+.......||+..|.+.|+.++..+|++..+++.|+..-.+.|+.++|..++..
T Consensus 375 D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~ 454 (478)
T KOG1129|consen 375 DLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNA 454 (478)
T ss_pred hhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHH
Confidence 99999999887543222334678888888888999999999999999999999999999999999999999999999998
Q ss_pred HHhC
Q 038200 458 MKKR 461 (523)
Q Consensus 458 m~~~ 461 (523)
.+..
T Consensus 455 A~s~ 458 (478)
T KOG1129|consen 455 AKSV 458 (478)
T ss_pred hhhh
Confidence 8664
No 56
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.43 E-value=1.1e-09 Score=97.61 Aligned_cols=276 Identities=9% Similarity=0.012 Sum_probs=190.2
Q ss_pred cCChHHHHHHHhhcCCC---CcchHHHHHHHHHhcCCHHHHHHHHhcCCC----CChhHHHHHHHHHHhcCCchHHHHHH
Q 038200 135 FGAMDCARNMFVQMSPR---DLISWNSIVSGHVRSGDMSAAHELFDIMPE----RNVVSWNIMISGYSKSGNPGCSLKLF 207 (523)
Q Consensus 135 ~g~~~~A~~~~~~~~~~---~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~li~~~~~~~~~~~a~~~~ 207 (523)
.|++..|++.+.+-.+. ....|..-..+--+.||.+.+-+.+.+..+ ++...+-+........|+++.|..-+
T Consensus 97 eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v 176 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENV 176 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHH
Confidence 35555555555554322 222333333444455666666666666544 23444555566667777777777777
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHcCCCCch-------HHHHHHhhhhhhcCChHHHHHHHHhc
Q 038200 208 REMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNI-------ILDTALIDLYSKCQKVEVAQRVFDSM 280 (523)
Q Consensus 208 ~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~a~~~~~~~ 280 (523)
.++.+.+ +-+.........+|.+.|++.....++..+.+.+.-.+. .+|+.+++-....+..+.-...++..
T Consensus 177 ~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~ 255 (400)
T COG3071 177 DQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQ 255 (400)
T ss_pred HHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhc
Confidence 7777654 334556667777777777777777777777777654332 34555555555555555555566666
Q ss_pred CC---CChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhHhcCC
Q 038200 281 AD---RNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKI 357 (523)
Q Consensus 281 ~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 357 (523)
+. .++..-.+++.-+.+.|+.++|.++..+..+.+ ..|+ ....-.+.+.++...-.+..++-.+. .
T Consensus 256 pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~-----~D~~----L~~~~~~l~~~d~~~l~k~~e~~l~~--h 324 (400)
T COG3071 256 PRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQ-----WDPR----LCRLIPRLRPGDPEPLIKAAEKWLKQ--H 324 (400)
T ss_pred cHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhc-----cChh----HHHHHhhcCCCCchHHHHHHHHHHHh--C
Confidence 43 456777788888899999999999999998877 5555 22334566778888888888877774 4
Q ss_pred CCChHHHHHHHHHHHcCCChHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 038200 358 KPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVD 426 (523)
Q Consensus 358 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 426 (523)
+.++..+.+|...|.+.+.+.+|.+.|+...+ ..|+..+++-+..++...|+...|.+..+...-
T Consensus 325 ~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~----~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~ 389 (400)
T COG3071 325 PEDPLLLSTLGRLALKNKLWGKASEALEAALK----LRPSASDYAELADALDQLGEPEEAEQVRREALL 389 (400)
T ss_pred CCChhHHHHHHHHHHHhhHHHHHHHHHHHHHh----cCCChhhHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 44558888899999999999999999998774 688999999999999999999999999888775
No 57
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.39 E-value=2e-10 Score=111.61 Aligned_cols=269 Identities=10% Similarity=0.055 Sum_probs=140.9
Q ss_pred HHHHHHHHCCCCCCcccHHHHHHHHHccCCchHHHHHHHHHHHhCCCCCchHHHHHHHHHHccCChHHHHHHHhhcCCCC
Q 038200 73 VFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRD 152 (523)
Q Consensus 73 ~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 152 (523)
.++-.+...|+.|+..||.+++..|+..|+.+.|- +|..|.-...+.+..+++.++......++.+.+. +|.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-------ep~ 82 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-------EPL 82 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-------CCc
Confidence 45666777888888888888888888888888887 8888877777777888888888888877776664 667
Q ss_pred cchHHHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHhcCCchHHHHHHHHHH-HCCCCCCHHHHHHHHHHHhc
Q 038200 153 LISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMM-KSGFRGNDKTMASVLTACGR 231 (523)
Q Consensus 153 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~-~~~~~p~~~~~~~ll~~~~~ 231 (523)
..+|..++.+|...||+..- +..++ -.-.++..+...|.-.....++..+. ..+.-||..+. +.-...
T Consensus 83 aDtyt~Ll~ayr~hGDli~f-e~veq-------dLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~---illlv~ 151 (1088)
T KOG4318|consen 83 ADTYTNLLKAYRIHGDLILF-EVVEQ-------DLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENA---ILLLVL 151 (1088)
T ss_pred hhHHHHHHHHHHhccchHHH-HHHHH-------HHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHH---HHHHHH
Confidence 77888888888888876551 11111 11112223333333333333332211 11122232221 111122
Q ss_pred cccHHHHHHHHHHHHHcCC-CCchHHHHHHhhhhh-hcCChHHHHHHHHhcCC-CChHHHHHHHHHHHhcCChHHHHHHH
Q 038200 232 SARFNEGRSVHGYTVRTSL-KPNIILDTALIDLYS-KCQKVEVAQRVFDSMAD-RNLVCWNAMILGHCIHGKPEEGIKLF 308 (523)
Q Consensus 232 ~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~-~~~~~~~a~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~a~~~~ 308 (523)
.|.++.+.+++..+-.... .|... ++.-.. ....+++-..+.....+ ++..++..++..-...|+.+.|..++
T Consensus 152 eglwaqllkll~~~Pvsa~~~p~~v----fLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll 227 (1088)
T KOG4318|consen 152 EGLWAQLLKLLAKVPVSAWNAPFQV----FLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLL 227 (1088)
T ss_pred HHHHHHHHHHHhhCCcccccchHHH----HHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHH
Confidence 2333333333322211100 00000 011111 11123333333333333 55556666666656666666666666
Q ss_pred HHHHhCCCCCCCcCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhHhcCCCCChHHHHHHHHHHHc
Q 038200 309 TALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAG 373 (523)
Q Consensus 309 ~~m~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 373 (523)
.+|.+.| ++.+..-|-.|+-+ .++...+..+++.|.+. |+.|+..|+...+..+..
T Consensus 228 ~emke~g-----fpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~-gv~p~seT~adyvip~l~ 283 (1088)
T KOG4318|consen 228 YEMKEKG-----FPIRAHYFWPLLLG---INAAQVFEFVLRGMQEK-GVQPGSETQADYVIPQLS 283 (1088)
T ss_pred HHHHHcC-----CCcccccchhhhhc---CccchHHHHHHHHHHHh-cCCCCcchhHHHHHhhhc
Confidence 6666665 55555555555443 45555555555555554 666666555544444444
No 58
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.39 E-value=1.9e-08 Score=95.11 Aligned_cols=429 Identities=11% Similarity=0.014 Sum_probs=282.5
Q ss_pred CChhHHHHHHHHhhccCCchhHHHHhccCC---CCCcccHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCcccHHHHHH
Q 038200 19 NNSFWTINLLKHSADFGSPDYTVLVFKCIN---NPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFG 95 (523)
Q Consensus 19 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~ 95 (523)
.++.+.....-.+...|+-++|........ ..+.++|..+.-.+....++++|++.|......+ +.|...+.-+.-
T Consensus 39 eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~-~dN~qilrDlsl 117 (700)
T KOG1156|consen 39 EHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIE-KDNLQILRDLSL 117 (700)
T ss_pred ccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHH
Confidence 677777766667777899999998887654 3567899999999999999999999999999865 455567777666
Q ss_pred HHHccCCchHHHHHHHHHHHhCCCCCchHHHHHHHHHHccCChHHHHHHHhhcCC-----CCcchHHHH------HHHHH
Q 038200 96 SCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSP-----RDLISWNSI------VSGHV 164 (523)
Q Consensus 96 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~l------l~~~~ 164 (523)
.-++.|+++..........+..+. ....|..+..++.-.|+...|..++++..+ ++...|.-. .....
T Consensus 118 LQ~QmRd~~~~~~tr~~LLql~~~-~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~ 196 (700)
T KOG1156|consen 118 LQIQMRDYEGYLETRNQLLQLRPS-QRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILI 196 (700)
T ss_pred HHHHHHhhhhHHHHHHHHHHhhhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHH
Confidence 667889999998888888887433 667888888899999999999999888752 344433332 23356
Q ss_pred hcCCHHHHHHHHhcCCCC--Chh-HHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHHHHHHHH-HHHhccccHHHHH-
Q 038200 165 RSGDMSAAHELFDIMPER--NVV-SWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVL-TACGRSARFNEGR- 239 (523)
Q Consensus 165 ~~~~~~~a~~~~~~~~~~--~~~-~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll-~~~~~~~~~~~a~- 239 (523)
+.|..+.|.+.+..-... |-. .-..-...+.+.++.++|..+|..++.. .||..-|...+ .++.+..+.-++.
T Consensus 197 E~g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~r--nPdn~~Yy~~l~~~lgk~~d~~~~lk 274 (700)
T KOG1156|consen 197 EAGSLQKALEHLLDNEKQIVDKLAFEETKADLLMKLGQLEEAVKVYRRLLER--NPDNLDYYEGLEKALGKIKDMLEALK 274 (700)
T ss_pred HcccHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhh--CchhHHHHHHHHHHHHHHhhhHHHHH
Confidence 788889998888776642 222 2234456788999999999999999986 46666665544 4443333333333
Q ss_pred HHHHHHHHcCCCCchHHHHHHhhhhhhcCChH-HHHHHHHhcCCC-ChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCC
Q 038200 240 SVHGYTVRTSLKPNIILDTALIDLYSKCQKVE-VAQRVFDSMADR-NLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVA 317 (523)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~a~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~ 317 (523)
.+|....+.- |....-.-+--......++. ..-.++..+.+. -+.++..+...|-.....+-..++...+.. +..
T Consensus 275 ~ly~~ls~~y--~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~vf~dl~SLyk~p~k~~~le~Lvt~y~~-~L~ 351 (700)
T KOG1156|consen 275 ALYAILSEKY--PRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSVFKDLRSLYKDPEKVAFLEKLVTSYQH-SLS 351 (700)
T ss_pred HHHHHHhhcC--cccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCchhhhhHHHHhchhHhHHHHHHHHHHHh-hcc
Confidence 6666555431 11111111111111112222 233333333332 233445555544333322211122211111 111
Q ss_pred CC---------C-cCCCH--HHHHHHHHHHhhcCcHHHHHHHHHHhhHhcCCCCC-hHHHHHHHHHHHcCCChHHHHHHH
Q 038200 318 GG---------S-ISPDE--ITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPN-FAHYWCMANLYAGAELTEEAEEIL 384 (523)
Q Consensus 318 ~~---------~-~~p~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~ 384 (523)
+. . -+|.. .++..++..+-..|+++.|..+++.... ..|+ +..|..=.+.+...|.+++|..++
T Consensus 352 ~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AId---HTPTliEly~~KaRI~kH~G~l~eAa~~l 428 (700)
T KOG1156|consen 352 GTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAID---HTPTLIELYLVKARIFKHAGLLDEAAAWL 428 (700)
T ss_pred cccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhc---cCchHHHHHHHHHHHHHhcCChHHHHHHH
Confidence 10 0 14444 3556677888999999999999999986 3454 566766778999999999999999
Q ss_pred HhCCCCCCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCC------Chh-hHH--HHHHHHHhcCChhHHHHHH
Q 038200 385 RKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQ------DFS-RYQ--FLLNVYAVAGQWEDVARVR 455 (523)
Q Consensus 385 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~------~~~-~~~--~l~~~~~~~g~~~~A~~~~ 455 (523)
++..+. -.+|..+-..-.....+..+.++|..+...+...+-+ +.. +|. .-+.+|.++|++.+|++=|
T Consensus 429 ~ea~el---D~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkf 505 (700)
T KOG1156|consen 429 DEAQEL---DTADRAINSKCAKYMLRANEIEEAEEVLSKFTREGFGAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKF 505 (700)
T ss_pred HHHHhc---cchhHHHHHHHHHHHHHccccHHHHHHHHHhhhcccchhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHH
Confidence 999865 3567666556667778899999999999988775432 111 222 2367899999999998877
Q ss_pred HHHHh
Q 038200 456 ELMKK 460 (523)
Q Consensus 456 ~~m~~ 460 (523)
..+.+
T Consensus 506 h~i~k 510 (700)
T KOG1156|consen 506 HEIEK 510 (700)
T ss_pred hhHHH
Confidence 76644
No 59
>PRK12370 invasion protein regulator; Provisional
Probab=99.38 E-value=2.5e-10 Score=114.17 Aligned_cols=261 Identities=10% Similarity=-0.021 Sum_probs=183.3
Q ss_pred ChhHHHHHHHHHHh-----cCCchHHHHHHHHHHHCCCCCC-HHHHHHHHHHHh---------ccccHHHHHHHHHHHHH
Q 038200 183 NVVSWNIMISGYSK-----SGNPGCSLKLFREMMKSGFRGN-DKTMASVLTACG---------RSARFNEGRSVHGYTVR 247 (523)
Q Consensus 183 ~~~~~~~li~~~~~-----~~~~~~a~~~~~~m~~~~~~p~-~~~~~~ll~~~~---------~~~~~~~a~~~~~~~~~ 247 (523)
+...|...+.+-.. .+++++|..+|++..+. .|+ ...|..+..++. ..+++++|...++++.+
T Consensus 255 ~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~l--dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ 332 (553)
T PRK12370 255 SIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNM--SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATE 332 (553)
T ss_pred ChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHh
Confidence 44555555554322 23467899999999885 444 445555554443 33458899999999998
Q ss_pred cCCCCchHHHHHHhhhhhhcCChHHHHHHHHhcCC--C-ChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcCCC
Q 038200 248 TSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMAD--R-NLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPD 324 (523)
Q Consensus 248 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~p~ 324 (523)
.+ +.+...+..+..++...|++++|...|++..+ | +...+..+...+...|++++|...+++..+.. |+
T Consensus 333 ld-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~-------P~ 404 (553)
T PRK12370 333 LD-HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLD-------PT 404 (553)
T ss_pred cC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-------CC
Confidence 75 33678888888889999999999999999754 3 45678888899999999999999999999854 65
Q ss_pred HH-HHHHHHHHHhhcCcHHHHHHHHHHhhHhcCCCC-ChHHHHHHHHHHHcCCChHHHHHHHHhCCCCCCCCCchH-HHH
Q 038200 325 EI-TFIGVICACVRAELLTEGRKYFRQMIDFYKIKP-NFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFES-IMW 401 (523)
Q Consensus 325 ~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-~~~ 401 (523)
.. .+..++..+...|++++|...++++.+. .+| ++..+..+..+|...|++++|.+.++++.. ..|+. ...
T Consensus 405 ~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~--~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~----~~~~~~~~~ 478 (553)
T PRK12370 405 RAAAGITKLWITYYHTGIDDAIRLGDELRSQ--HLQDNPILLSMQVMFLSLKGKHELARKLTKEIST----QEITGLIAV 478 (553)
T ss_pred ChhhHHHHHHHHHhccCHHHHHHHHHHHHHh--ccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhh----ccchhHHHH
Confidence 32 3334455566789999999999998763 334 455677788889999999999999999774 24443 334
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 038200 402 VSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRR 462 (523)
Q Consensus 402 ~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 462 (523)
+.+...+...| +.|...++.+.+..-..+.....+...|.-.|+.+.+... +++.+.+
T Consensus 479 ~~l~~~~~~~g--~~a~~~l~~ll~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 479 NLLYAEYCQNS--ERALPTIREFLESEQRIDNNPGLLPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred HHHHHHHhccH--HHHHHHHHHHHHHhhHhhcCchHHHHHHHHHhhhHHHHHH-HHhhccc
Confidence 44444566666 4777777777663222222223366677777888877776 7776543
No 60
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.37 E-value=2.6e-09 Score=99.24 Aligned_cols=415 Identities=10% Similarity=-0.016 Sum_probs=286.8
Q ss_pred CCCCCChhHHHHHHHHhhccCCchhHHHHhcc--CCCCCcccHHHHHHHHHhCCCchHHHHHHH----HHHHC-------
Q 038200 15 GLFFNNSFWTINLLKHSADFGSPDYTVLVFKC--INNPGTFCVNAVIKAYSNSCVPDQGVVFYL----QMIKN------- 81 (523)
Q Consensus 15 g~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~--~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~----~m~~~------- 81 (523)
|+. .+|.-.--+++++.-.|+.+.|..+... +.+.|..+.......+.+..++++|..++. .+...
T Consensus 44 ~l~-~dp~d~~~~aq~l~~~~~y~ra~~lit~~~le~~d~~cryL~~~~l~~lk~~~~al~vl~~~~~~~~~f~yy~~~~ 122 (611)
T KOG1173|consen 44 GLT-NDPADIYWLAQVLYLGRQYERAAHLITTYKLEKRDIACRYLAAKCLVKLKEWDQALLVLGRGHVETNPFSYYEKDA 122 (611)
T ss_pred hcc-CChHHHHHHHHHHHhhhHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhcccchhhcchhhcchhh
Confidence 444 4555555566677777778887777653 457888888889999999999999999988 32210
Q ss_pred --CCCCCccc----HHHHHH-------HHHccCCchHHHHHHHHHHHhCCCCCchHHHHHHHHHHcc-------------
Q 038200 82 --GFMPNSYT----FVSLFG-------SCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCF------------- 135 (523)
Q Consensus 82 --~~~p~~~~----~~~ll~-------~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~------------- 135 (523)
-+.+|..- -+.-.. .+....++++|...+.+.+...+. .-..+..|+....-.
T Consensus 123 ~~~l~~n~~~~~~~~~~essic~lRgk~y~al~n~~~ar~~Y~~Al~~D~~-c~Ea~~~lvs~~mlt~~Ee~~ll~~l~~ 201 (611)
T KOG1173|consen 123 ANTLELNSAGEDLMINLESSICYLRGKVYVALDNREEARDKYKEALLADAK-CFEAFEKLVSAHMLTAQEEFELLESLDL 201 (611)
T ss_pred hceeccCcccccccccchhceeeeeeehhhhhccHHHHHHHHHHHHhcchh-hHHHHHHHHHHHhcchhHHHHHHhcccH
Confidence 01112111 111111 123334667777777776654332 122222222222111
Q ss_pred -----CChHHHHHHHhhc----C----------------CCCcchHHHHHHHHHhcCCHHHHHHHHhcCCC---CChhHH
Q 038200 136 -----GAMDCARNMFVQM----S----------------PRDLISWNSIVSGHVRSGDMSAAHELFDIMPE---RNVVSW 187 (523)
Q Consensus 136 -----g~~~~A~~~~~~~----~----------------~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~---~~~~~~ 187 (523)
.+.+.-+..|+-. . ..++........-+...+++.+..++++.+.+ +....+
T Consensus 202 a~~~~ed~e~l~~lyel~~~k~~n~~~~~r~~~~sl~~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~ 281 (611)
T KOG1173|consen 202 AMLTKEDVERLEILYELKLCKNRNEESLTRNEDESLIGLAENLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCL 281 (611)
T ss_pred HhhhhhHHHHHHHHHHhhhhhhccccccccCchhhhhhhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchH
Confidence 1112222222211 0 01223333344456778999999999998876 344556
Q ss_pred HHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHcCCCCchHHHHHHhhhhhhc
Q 038200 188 NIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKC 267 (523)
Q Consensus 188 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 267 (523)
..-|.++...|+..+-+.+=.+|++. .+-...+|-.+.--|...|+..+|.+.|.+....+. .-...|-.+.+.|.-.
T Consensus 282 ~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aVg~YYl~i~k~seARry~SKat~lD~-~fgpaWl~fghsfa~e 359 (611)
T KOG1173|consen 282 PLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAVGCYYLMIGKYSEARRYFSKATTLDP-TFGPAWLAFGHSFAGE 359 (611)
T ss_pred HHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCc-cccHHHHHHhHHhhhc
Confidence 66677889999999988888889886 455778999999999999999999999999887542 2357888899999999
Q ss_pred CChHHHHHHHHhcCC--C-ChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcCCCHHHHHHHHHHHhhcCcHHHH
Q 038200 268 QKVEVAQRVFDSMAD--R-NLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEG 344 (523)
Q Consensus 268 ~~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a 344 (523)
|.-+.|+..|....+ + .-..+--+..-|.+.++...|.+.|.+..... +.|+..++-+.-.....+.+.+|
T Consensus 360 ~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai~------P~Dplv~~Elgvvay~~~~y~~A 433 (611)
T KOG1173|consen 360 GEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLAEKFFKQALAIA------PSDPLVLHELGVVAYTYEEYPEA 433 (611)
T ss_pred chHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHHHHHHHHHHhcC------CCcchhhhhhhheeehHhhhHHH
Confidence 999999988877644 1 22233344556788999999999999998842 34567777777777778999999
Q ss_pred HHHHHHhhHhc-CCC----CChHHHHHHHHHHHcCCChHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHhcCCHHHHHH
Q 038200 345 RKYFRQMIDFY-KIK----PNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVER 419 (523)
Q Consensus 345 ~~~~~~~~~~~-~~~----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 419 (523)
..+|+.....- .+. -...+++.|..+|.+.+++++|+..+++.+.. .+.+..++.++.-.+...|+++.|..
T Consensus 434 ~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l---~~k~~~~~asig~iy~llgnld~Aid 510 (611)
T KOG1173|consen 434 LKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLL---SPKDASTHASIGYIYHLLGNLDKAID 510 (611)
T ss_pred HHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHc---CCCchhHHHHHHHHHHHhcChHHHHH
Confidence 99999887310 011 13456888999999999999999999998864 45678888888889999999999999
Q ss_pred HHHHHhhcCCCChhhHHHHHHHH
Q 038200 420 LAKSFVDMDPQDFSRYQFLLNVY 442 (523)
Q Consensus 420 ~~~~~~~~~p~~~~~~~~l~~~~ 442 (523)
.|.+++.+.|++..+-..|..+.
T Consensus 511 ~fhKaL~l~p~n~~~~~lL~~ai 533 (611)
T KOG1173|consen 511 HFHKALALKPDNIFISELLKLAI 533 (611)
T ss_pred HHHHHHhcCCccHHHHHHHHHHH
Confidence 99999999998865555554443
No 61
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.36 E-value=5.1e-09 Score=100.78 Aligned_cols=412 Identities=14% Similarity=0.052 Sum_probs=236.6
Q ss_pred CCCCCChhHHHHHHHHhhccCCchhHHHHhccCCC---CCcccHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCC-cccH
Q 038200 15 GLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINN---PGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPN-SYTF 90 (523)
Q Consensus 15 g~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~ 90 (523)
.+. .++..|..|.-.+..+|+++.+.+.|++... .....|+.+-..+...|....|+.+++.-....-.|+ ...+
T Consensus 318 ~~q-nd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~ 396 (799)
T KOG4162|consen 318 KFQ-NDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVL 396 (799)
T ss_pred hhc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHH
Confidence 344 5777888888888888888888888877543 3445677777788888888888888776654322233 3333
Q ss_pred HHHHHHHH-ccCCchHHHHHHHHHHHhC--C--CCCchHHHHHHHHHHccCChHHHHHHHhhcCCCCcchHHHHHHHHHh
Q 038200 91 VSLFGSCA-KTGCVERGGMCHGLALKNG--V--DFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVR 165 (523)
Q Consensus 91 ~~ll~~~~-~~~~~~~a~~~~~~~~~~~--~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~ 165 (523)
...-..|. +.+.+++++.+-.+++... . ......|..+.-+|...-. ..+..+ -+
T Consensus 397 Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~------------~a~~~s--------eR 456 (799)
T KOG4162|consen 397 LMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQAR------------QANLKS--------ER 456 (799)
T ss_pred HHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhh------------cCCChH--------HH
Confidence 33334443 4466666666666655521 1 1123334444444432100 000000 01
Q ss_pred cCCHHHHHHHHhcCCC---CChhHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHH
Q 038200 166 SGDMSAAHELFDIMPE---RNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVH 242 (523)
Q Consensus 166 ~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 242 (523)
.....++++.+++..+ .|..+...+.--|+..++.+.|++..++..+.+-.-+...|..+.-++...+++.+|+.+.
T Consensus 457 ~~~h~kslqale~av~~d~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vv 536 (799)
T KOG4162|consen 457 DALHKKSLQALEEAVQFDPTDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVV 536 (799)
T ss_pred HHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHH
Confidence 1122344444544432 1222222222334555666666666666666544555666666666666666666666666
Q ss_pred HHHHHcCCCCchHHHHHHhhhhhhcCChHHHHHHHHhcCC-------------------------------CC-hHHHHH
Q 038200 243 GYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMAD-------------------------------RN-LVCWNA 290 (523)
Q Consensus 243 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-------------------------------~~-~~~~~~ 290 (523)
+.....- +-|-.....-++.-...++.+++......+.. .+ ..++..
T Consensus 537 d~al~E~-~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ 615 (799)
T KOG4162|consen 537 DAALEEF-GDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRY 615 (799)
T ss_pred HHHHHHh-hhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHH
Confidence 5554431 11111111111111123333333332222110 01 112222
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCCCcCC--C------HHHHHHHHHHHhhcCcHHHHHHHHHHhhHhcCCCCChH
Q 038200 291 MILGHCIHGKPEEGIKLFTALVNGTVAGGSISP--D------EITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFA 362 (523)
Q Consensus 291 li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~p--~------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 362 (523)
+..-.... ...+..-.. +.... +.| + ...|......+.+.+..++|...+.+..+ -.+-...
T Consensus 616 ls~l~a~~--~~~~~se~~-Lp~s~-----~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~--~~~l~~~ 685 (799)
T KOG4162|consen 616 LSSLVASQ--LKSAGSELK-LPSST-----VLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASK--IDPLSAS 685 (799)
T ss_pred HHHHHHhh--hhhcccccc-cCccc-----ccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHh--cchhhHH
Confidence 22111111 000000000 11111 222 2 12344555677888999999988888877 3445667
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHhCCCCCCCCCch-HHHHHHHHHHHHhcCCHHHHHH--HHHHHhhcCCCChhhHHHHH
Q 038200 363 HYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFE-SIMWVSLLSLCRFQGAVAMVER--LAKSFVDMDPQDFSRYQFLL 439 (523)
Q Consensus 363 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~--~~~~~~~~~p~~~~~~~~l~ 439 (523)
.|......+...|..++|.+.|..... +.|+ .....++...+.+.|+...|.. ++..+.+++|.++.+|..|+
T Consensus 686 ~~~~~G~~~~~~~~~~EA~~af~~Al~----ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG 761 (799)
T KOG4162|consen 686 VYYLRGLLLEVKGQLEEAKEAFLVALA----LDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLG 761 (799)
T ss_pred HHHHhhHHHHHHHhhHHHHHHHHHHHh----cCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHH
Confidence 777778888999999999999999885 4554 5677788888999999888888 99999999999999999999
Q ss_pred HHHHhcCChhHHHHHHHHHHhCC
Q 038200 440 NVYAVAGQWEDVARVRELMKKRR 462 (523)
Q Consensus 440 ~~~~~~g~~~~A~~~~~~m~~~~ 462 (523)
.++.+.|+.++|.+.|....+..
T Consensus 762 ~v~k~~Gd~~~Aaecf~aa~qLe 784 (799)
T KOG4162|consen 762 EVFKKLGDSKQAAECFQAALQLE 784 (799)
T ss_pred HHHHHccchHHHHHHHHHHHhhc
Confidence 99999999999999999887653
No 62
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.35 E-value=1.7e-08 Score=90.32 Aligned_cols=268 Identities=10% Similarity=0.002 Sum_probs=159.3
Q ss_pred CcchHHHHHHHHHhcCCHHHHHHHHhcCCCCChhHHH---HHHHHHHhcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 038200 152 DLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWN---IMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTA 228 (523)
Q Consensus 152 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~ 228 (523)
|......+...+...|+.++|+..|++...-|..+.. ...-.+.+.|+.+....+...+.... .-+...|..-+..
T Consensus 231 NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~ 309 (564)
T KOG1174|consen 231 NEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQL 309 (564)
T ss_pred cHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhh
Confidence 5555666666666667777777777665543332221 11223445666666666665554431 1222233333333
Q ss_pred HhccccHHHHHHHHHHHHHcCCCCchHHHHHHhhhhhhcCChHHHHHHHHhcCC---CChHHHHHHHHHHHhcCChHHHH
Q 038200 229 CGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMAD---RNLVCWNAMILGHCIHGKPEEGI 305 (523)
Q Consensus 229 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~ 305 (523)
+...++++.|..+-++.++.+ +.+...+-.-..++...++.+.|.-.|+.... -+..+|.-|+.+|...|++.+|.
T Consensus 310 l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~ 388 (564)
T KOG1174|consen 310 LYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEAN 388 (564)
T ss_pred hhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHH
Confidence 445566666666666665543 22344444444556666777777666665533 25567777777777777777777
Q ss_pred HHHHHHHhCCCCCCCcCCCHHHHHHHH-HHHh-hcCcHHHHHHHHHHhhHhcCCCCC-hHHHHHHHHHHHcCCChHHHHH
Q 038200 306 KLFTALVNGTVAGGSISPDEITFIGVI-CACV-RAELLTEGRKYFRQMIDFYKIKPN-FAHYWCMANLYAGAELTEEAEE 382 (523)
Q Consensus 306 ~~~~~m~~~~~~~~~~~p~~~~~~~ll-~~~~-~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~ 382 (523)
.+-+...+. .+.+..+...+. ..|. ...--++|.+++++... +.|+ ......+...+...|+.++++.
T Consensus 389 ~~An~~~~~------~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~---~~P~Y~~AV~~~AEL~~~Eg~~~D~i~ 459 (564)
T KOG1174|consen 389 ALANWTIRL------FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLK---INPIYTPAVNLIAELCQVEGPTKDIIK 459 (564)
T ss_pred HHHHHHHHH------hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhc---cCCccHHHHHHHHHHHHhhCccchHHH
Confidence 666655543 233444544442 2222 22334667777776654 4454 3455566677777888888888
Q ss_pred HHHhCCCCCCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhh
Q 038200 383 ILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSR 434 (523)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 434 (523)
++++... ..||....+.|...+...+.+++|...|..++.++|++..+
T Consensus 460 LLe~~L~----~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~s 507 (564)
T KOG1174|consen 460 LLEKHLI----IFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKRT 507 (564)
T ss_pred HHHHHHh----hccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchHH
Confidence 8887764 46777777777777877888888888888888888876543
No 63
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.34 E-value=1.5e-10 Score=110.25 Aligned_cols=240 Identities=15% Similarity=0.131 Sum_probs=173.4
Q ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHHc-----C-CCCch-HHHHHHhhhhhhcCChHHHHHHHHhcCC--------CC
Q 038200 220 KTMASVLTACGRSARFNEGRSVHGYTVRT-----S-LKPNI-ILDTALIDLYSKCQKVEVAQRVFDSMAD--------RN 284 (523)
Q Consensus 220 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~-~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~--------~~ 284 (523)
.+...+...|...|+++.|..+++..++. | ..|.. ...+.+...|...+++.+|..+|+++.. .+
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h 279 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDH 279 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCC
Confidence 45666777888888888888888877664 1 12333 3334577788888888888888887743 12
Q ss_pred ---hHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCC-cCCCH-HHHHHHHHHHhhcCcHHHHHHHHHHhhHhcC--C
Q 038200 285 ---LVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGS-ISPDE-ITFIGVICACVRAELLTEGRKYFRQMIDFYK--I 357 (523)
Q Consensus 285 ---~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~-~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~ 357 (523)
..+++.|..+|.+.|++++|..++++..+--....+ ..|.. .-++.+...|...+++++|..++++..+.+. +
T Consensus 280 ~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~ 359 (508)
T KOG1840|consen 280 PAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAP 359 (508)
T ss_pred HHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhc
Confidence 246788888899999988888777766442100000 12332 2466677788999999999999998776533 2
Q ss_pred CC----ChHHHHHHHHHHHcCCChHHHHHHHHhCCCCC----CCCCc-hHHHHHHHHHHHHhcCCHHHHHHHHHHHhh--
Q 038200 358 KP----NFAHYWCMANLYAGAELTEEAEEILRKMPEDN----DNMSF-ESIMWVSLLSLCRFQGAVAMVERLAKSFVD-- 426 (523)
Q Consensus 358 ~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-- 426 (523)
.+ -..+++.|...|...|++++|.+++++++... .+..+ ....++.+...|.+.+++.+|.++|.....
T Consensus 360 g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~ 439 (508)
T KOG1840|consen 360 GEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIM 439 (508)
T ss_pred cccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHH
Confidence 22 24678999999999999999999999876432 22223 256677888889999999989888887765
Q ss_pred --cCCC---ChhhHHHHHHHHHhcCChhHHHHHHHHHH
Q 038200 427 --MDPQ---DFSRYQFLLNVYAVAGQWEDVARVRELMK 459 (523)
Q Consensus 427 --~~p~---~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 459 (523)
.+|+ ...+|..|+.+|.+.|++++|.++.+.+.
T Consensus 440 ~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 440 KLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 3444 45688999999999999999999988775
No 64
>PF13041 PPR_2: PPR repeat family
Probab=99.34 E-value=1.8e-12 Score=83.02 Aligned_cols=50 Identities=26% Similarity=0.496 Sum_probs=44.1
Q ss_pred CCcccHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCcccHHHHHHHHHc
Q 038200 50 PGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAK 99 (523)
Q Consensus 50 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 99 (523)
||+.+||++|++|++.|++++|.++|++|.+.|++||..||++++++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 78888999999999999999999999999998999999999999888864
No 65
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.34 E-value=3.5e-08 Score=93.15 Aligned_cols=292 Identities=12% Similarity=0.139 Sum_probs=144.3
Q ss_pred cCCchHHHHHHHHHHHCCCCCC------HHHHHHHHHHHhccccHHHHHHHHHHHHHcCCCCc---hHHHHHHhhhhhhc
Q 038200 197 SGNPGCSLKLFREMMKSGFRGN------DKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPN---IILDTALIDLYSKC 267 (523)
Q Consensus 197 ~~~~~~a~~~~~~m~~~~~~p~------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~ 267 (523)
.|+..+....|.+.++. +.|. ...|..+...|-..|+++.|..+|++..+-..+.- ..+|..-.++-.+.
T Consensus 360 e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh 438 (835)
T KOG2047|consen 360 EGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRH 438 (835)
T ss_pred cCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhh
Confidence 45556666666666554 2221 23456666667777777777777777666543321 34555556666666
Q ss_pred CChHHHHHHHHhcCC---------------------CChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC--------
Q 038200 268 QKVEVAQRVFDSMAD---------------------RNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAG-------- 318 (523)
Q Consensus 268 ~~~~~a~~~~~~~~~---------------------~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~-------- 318 (523)
.+++.|+++.++... ++...|...+..--..|-++....+++++++..+..
T Consensus 439 ~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~NyA 518 (835)
T KOG2047|consen 439 ENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYA 518 (835)
T ss_pred hhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 667777766665422 122334444444444455555555555555543100
Q ss_pred -----------------CC----cCCCH-HHHHHHHHHHhh---cCcHHHHHHHHHHhhHhcCCCCChHHHHHH--HHHH
Q 038200 319 -----------------GS----ISPDE-ITFIGVICACVR---AELLTEGRKYFRQMIDFYKIKPNFAHYWCM--ANLY 371 (523)
Q Consensus 319 -----------------~~----~~p~~-~~~~~ll~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l--~~~~ 371 (523)
.| -.|+. ..|+..+.-+.+ ....+.|..+|++..+ +.+|...-+-.| ...-
T Consensus 519 mfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~--~Cpp~~aKtiyLlYA~lE 596 (835)
T KOG2047|consen 519 MFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD--GCPPEHAKTIYLLYAKLE 596 (835)
T ss_pred HHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHHH
Confidence 00 11221 123333332221 2345666666666666 455432211111 1122
Q ss_pred HcCCChHHHHHHHHhCCCCCCCCCch--HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCC--hhhHHHHHHHHHhcCC
Q 038200 372 AGAELTEEAEEILRKMPEDNDNMSFE--SIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQD--FSRYQFLLNVYAVAGQ 447 (523)
Q Consensus 372 ~~~g~~~~A~~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~--~~~~~~l~~~~~~~g~ 447 (523)
-+.|-...|+++++++... +++. -..|+..+.-....=-......+|+++++.-|++ .......+..=.+.|.
T Consensus 597 Ee~GLar~amsiyerat~~---v~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe~Lp~~~~r~mclrFAdlEtklGE 673 (835)
T KOG2047|consen 597 EEHGLARHAMSIYERATSA---VKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIESLPDSKAREMCLRFADLETKLGE 673 (835)
T ss_pred HHhhHHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHhCChHHHHHHHHHHHHHhhhhhh
Confidence 2345566666666665432 3332 2345555442222222344456667777665642 2233445566677888
Q ss_pred hhHHHHHHHHHHhCCCccCCceeEEEeCCeEEEEecCCCCchHHHHHHHHHH
Q 038200 448 WEDVARVRELMKKRRMGRMPGCRLVDLKEVVEKLKVGHFWRGGMKEEVNKMM 499 (523)
Q Consensus 448 ~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 499 (523)
.+.|..++.--.+.--+... .++=...+.|-...++ ++.+.+|-++.
T Consensus 674 idRARaIya~~sq~~dPr~~----~~fW~twk~FEvrHGn-edT~keMLRik 720 (835)
T KOG2047|consen 674 IDRARAIYAHGSQICDPRVT----TEFWDTWKEFEVRHGN-EDTYKEMLRIK 720 (835)
T ss_pred HHHHHHHHHhhhhcCCCcCC----hHHHHHHHHHHHhcCC-HHHHHHHHHHH
Confidence 88888888766553211111 1223344455555555 44444444433
No 66
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.33 E-value=1.2e-10 Score=100.56 Aligned_cols=231 Identities=12% Similarity=0.112 Sum_probs=196.2
Q ss_pred HHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHcCCCCchHHHHHHhhhhhhc
Q 038200 188 NIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKC 267 (523)
Q Consensus 188 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 267 (523)
+.+..+|.+.|-+.+|.+.|+...+. .|-..||..|-++|.+..++..|..++.+-++. ++.++....-....+...
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~eam 303 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHEAM 303 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHHHH
Confidence 56888999999999999999988885 577789999999999999999999999988876 344666666677888889
Q ss_pred CChHHHHHHHHhcCC---CChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcCCCHHHHHHHHHHHhhcCcHHHH
Q 038200 268 QKVEVAQRVFDSMAD---RNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEG 344 (523)
Q Consensus 268 ~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a 344 (523)
++.++|.++|+...+ .++.....+...|.-.++.+-|+..|+++...| .-++..|+.+.-+|.-.+++|-+
T Consensus 304 ~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG------~~speLf~NigLCC~yaqQ~D~~ 377 (478)
T KOG1129|consen 304 EQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMG------AQSPELFCNIGLCCLYAQQIDLV 377 (478)
T ss_pred HhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhc------CCChHHHhhHHHHHHhhcchhhh
Confidence 999999999999866 355666677778888999999999999999998 35677899999999999999999
Q ss_pred HHHHHHhhHhcCCCCC--hHHHHHHHHHHHcCCChHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHhcCCHHHHHHHHH
Q 038200 345 RKYFRQMIDFYKIKPN--FAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAK 422 (523)
Q Consensus 345 ~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 422 (523)
+.-|++.... --.|+ ...|..|.......|++.-|.+.|+-.+.. -..+...++.|.-.-.+.|+++.|..+++
T Consensus 378 L~sf~RAlst-at~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~---d~~h~ealnNLavL~~r~G~i~~Arsll~ 453 (478)
T KOG1129|consen 378 LPSFQRALST-ATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTS---DAQHGEALNNLAVLAARSGDILGARSLLN 453 (478)
T ss_pred HHHHHHHHhh-ccCcchhhhhhhccceeEEeccchHHHHHHHHHHhcc---CcchHHHHHhHHHHHhhcCchHHHHHHHH
Confidence 9999998874 34354 567888999999999999999999998854 24457788888888899999999999999
Q ss_pred HHhhcCCCC
Q 038200 423 SFVDMDPQD 431 (523)
Q Consensus 423 ~~~~~~p~~ 431 (523)
.+....|+-
T Consensus 454 ~A~s~~P~m 462 (478)
T KOG1129|consen 454 AAKSVMPDM 462 (478)
T ss_pred HhhhhCccc
Confidence 999988863
No 67
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.33 E-value=2.8e-09 Score=100.53 Aligned_cols=254 Identities=13% Similarity=0.088 Sum_probs=159.4
Q ss_pred HHHHHHHHhCCCchHHHHHHHHHHHCCCCCCcccHHHHHHHHHccCCchHHHHHHHHHHHhCCCCCchHHHHHHHHHHcc
Q 038200 56 NAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCF 135 (523)
Q Consensus 56 ~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 135 (523)
..++..| ..+++...++..+..++. .+-...|.....-.+...|+.++|.......++..+. +...|..+.-.+...
T Consensus 12 ~~~lk~y-E~kQYkkgLK~~~~iL~k-~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~-S~vCwHv~gl~~R~d 88 (700)
T KOG1156|consen 12 RRALKCY-ETKQYKKGLKLIKQILKK-FPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLK-SHVCWHVLGLLQRSD 88 (700)
T ss_pred HHHHHHH-HHHHHHhHHHHHHHHHHh-CCccchhHHhccchhhcccchHHHHHHHHHHhccCcc-cchhHHHHHHHHhhh
Confidence 3344433 446777777777777663 2333344444444455668888888888877776555 777888888888888
Q ss_pred CChHHHHHHHhhcC---CCCcchHHHHHHHHHhcCCHHHHHHHHhcCCC---CChhHHHHHHHHHHhcCCchHHHHHHHH
Q 038200 136 GAMDCARNMFVQMS---PRDLISWNSIVSGHVRSGDMSAAHELFDIMPE---RNVVSWNIMISGYSKSGNPGCSLKLFRE 209 (523)
Q Consensus 136 g~~~~A~~~~~~~~---~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~ 209 (523)
.++++|++.|.... +.|...|.-+--..++.|+++.....-.+..+ .....|..++.++.-.|+...|..++++
T Consensus 89 K~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il~e 168 (700)
T KOG1156|consen 89 KKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALEILEE 168 (700)
T ss_pred hhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888765 34566666666666677777777666666554 3446688888888888899999888888
Q ss_pred HHHCCC-CCCHHHHHHHH------HHHhccccHHHHHHHHHHHHHcCCCCchHHHHHHhhhhhhcCChHHHHHHHHhcCC
Q 038200 210 MMKSGF-RGNDKTMASVL------TACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMAD 282 (523)
Q Consensus 210 m~~~~~-~p~~~~~~~ll------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 282 (523)
..+... .|+...|.... ......|..+.|.+.+..-... +.-....-..-...+.+.+++++|..++..+..
T Consensus 169 f~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~-i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~ 247 (700)
T KOG1156|consen 169 FEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ-IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLE 247 (700)
T ss_pred HHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH-HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHh
Confidence 877642 45655554332 2245567777777666544332 111223333455667788888999888888866
Q ss_pred --CChHHHH-HHHHHHHhcCChHHHH-HHHHHHHh
Q 038200 283 --RNLVCWN-AMILGHCIHGKPEEGI-KLFTALVN 313 (523)
Q Consensus 283 --~~~~~~~-~li~~~~~~g~~~~a~-~~~~~m~~ 313 (523)
||..-|. .+..++.+-.+.-+++ .+|....+
T Consensus 248 rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~ 282 (700)
T KOG1156|consen 248 RNPDNLDYYEGLEKALGKIKDMLEALKALYAILSE 282 (700)
T ss_pred hCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhh
Confidence 3333333 3334443222333333 55555544
No 68
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.33 E-value=7.5e-10 Score=98.50 Aligned_cols=201 Identities=11% Similarity=0.117 Sum_probs=103.0
Q ss_pred hHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHcCCCCchHHHHHHhhhh
Q 038200 185 VSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLY 264 (523)
Q Consensus 185 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 264 (523)
..+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|...+++..+... .+.
T Consensus 32 ~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~-~~~---------- 99 (234)
T TIGR02521 32 KIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLNP-NNG---------- 99 (234)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CCH----------
Confidence 445555555556666666666665555432 22334444555555555555555555555554321 123
Q ss_pred hhcCChHHHHHHHHhcCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcCCCHHHHHHHHHHHhhcCcHHHH
Q 038200 265 SKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEG 344 (523)
Q Consensus 265 ~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a 344 (523)
..+..+...+...|++++|...+++...... .......+..+...+...|++++|
T Consensus 100 ---------------------~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~g~~~~A 154 (234)
T TIGR02521 100 ---------------------DVLNNYGTFLCQQGKYEQAMQQFEQAIEDPL----YPQPARSLENAGLCALKAGDFDKA 154 (234)
T ss_pred ---------------------HHHHHHHHHHHHcccHHHHHHHHHHHHhccc----cccchHHHHHHHHHHHHcCCHHHH
Confidence 3344444455555555555555555554320 111233444455555666666666
Q ss_pred HHHHHHhhHhcCCCCChHHHHHHHHHHHcCCChHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 038200 345 RKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSF 424 (523)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 424 (523)
...+++..+. .+.+...+..+...+...|++++|.+.+++.... .+.+...+..+...+...|+.+.|..+.+.+
T Consensus 155 ~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 229 (234)
T TIGR02521 155 EKYLTRALQI--DPQRPESLLELAELYYLRGQYKDARAYLERYQQT---YNQTAESLWLGIRIARALGDVAAAQRYGAQL 229 (234)
T ss_pred HHHHHHHHHh--CcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 6666665552 2223445555666666666666666666665532 1223344444445555566666666665555
Q ss_pred hhc
Q 038200 425 VDM 427 (523)
Q Consensus 425 ~~~ 427 (523)
...
T Consensus 230 ~~~ 232 (234)
T TIGR02521 230 QKL 232 (234)
T ss_pred Hhh
Confidence 443
No 69
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.30 E-value=2.6e-08 Score=87.34 Aligned_cols=454 Identities=12% Similarity=0.062 Sum_probs=243.5
Q ss_pred HhhccCCchhHHHHhccCCC---CCcccHHH-HHHHHHhCCCchHHHHHHHHHHHCCCCCCcccHHHHHHHHHccCCchH
Q 038200 30 HSADFGSPDYTVLVFKCINN---PGTFCVNA-VIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVER 105 (523)
Q Consensus 30 ~~~~~g~~~~A~~~~~~~~~---~~~~~~~~-ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~ 105 (523)
-+....++..|+.+++.-.. ....+.+. +...+-..|++++|..++..+.+.. .|+...+..|.-+..-.|.+.+
T Consensus 31 dfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~Y~e 109 (557)
T KOG3785|consen 31 DFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQYIE 109 (557)
T ss_pred HHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHHHHH
Confidence 34445667777777654321 11112222 2334456677777777777766654 4555555555555556677777
Q ss_pred HHHHHHHHHHhCCCCCchH-HHHHHHHHHccCChHHHHHHHhhcCCCCcchHHHHHHHHHhcCCHHHHHHHHhcCCC--C
Q 038200 106 GGMCHGLALKNGVDFELPV-MNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPE--R 182 (523)
Q Consensus 106 a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~--~ 182 (523)
|.++.... |+... -..|+....+.++-++-..+-+.+... ...--++....-..-.+.+|++++.++.. |
T Consensus 110 A~~~~~ka------~k~pL~~RLlfhlahklndEk~~~~fh~~LqD~-~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ 182 (557)
T KOG3785|consen 110 AKSIAEKA------PKTPLCIRLLFHLAHKLNDEKRILTFHSSLQDT-LEDQLSLASVHYMRMHYQEAIDVYKRVLQDNP 182 (557)
T ss_pred HHHHHhhC------CCChHHHHHHHHHHHHhCcHHHHHHHHHHHhhh-HHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCh
Confidence 76665433 23333 333444445566655555444444321 12222333333344568889999988875 4
Q ss_pred ChhHHHH-HHHHHHhcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc--ccHHHHH------------HHHHHHHH
Q 038200 183 NVVSWNI-MISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRS--ARFNEGR------------SVHGYTVR 247 (523)
Q Consensus 183 ~~~~~~~-li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~--~~~~~a~------------~~~~~~~~ 247 (523)
+-...|. +.-+|.+..-++-+.++++-..+. ++.+....+..+....+. |+..+.+ ...+.+.+
T Consensus 183 ey~alNVy~ALCyyKlDYydvsqevl~vYL~q-~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~r 261 (557)
T KOG3785|consen 183 EYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ-FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCR 261 (557)
T ss_pred hhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh-CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHH
Confidence 4344443 445677888888888888777764 333334444443333322 2211110 11112222
Q ss_pred cCC------------CC-----chHHHHHHhhhhhhcCChHHHHHHHHhcCCCChHHHHHHHHHHHhcC-------ChHH
Q 038200 248 TSL------------KP-----NIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHG-------KPEE 303 (523)
Q Consensus 248 ~~~------------~~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g-------~~~~ 303 (523)
.+. -| -+..--.|+-.|.+.++..+|..+.+++....+.-|-.-.-.++..| ...-
T Consensus 262 HNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl~PttP~EyilKgvv~aalGQe~gSreHlKi 341 (557)
T KOG3785|consen 262 HNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKDLDPTTPYEYILKGVVFAALGQETGSREHLKI 341 (557)
T ss_pred cCeEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhhcCCCChHHHHHHHHHHHHhhhhcCcHHHHHH
Confidence 110 01 11233346667889999999999999987654443332222233333 3444
Q ss_pred HHHHHHHHHhCCCCCCCcCCC-HHHHHHHHHHHhhcCcHHHHHHHHHHhhHhcCCCCChHHHHHHHHHHHcCCChHHHHH
Q 038200 304 GIKLFTALVNGTVAGGSISPD-EITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEE 382 (523)
Q Consensus 304 a~~~~~~m~~~~~~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 382 (523)
|.+.|.-.-..+ ..-| ..--.++...+.-..++++.+-+++.+..- -...|...+ .+..+++..|++.+|.+
T Consensus 342 AqqffqlVG~Sa-----~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sY-F~NdD~Fn~-N~AQAk~atgny~eaEe 414 (557)
T KOG3785|consen 342 AQQFFQLVGESA-----LECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESY-FTNDDDFNL-NLAQAKLATGNYVEAEE 414 (557)
T ss_pred HHHHHHHhcccc-----cccccccchHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCcchhhh-HHHHHHHHhcChHHHHH
Confidence 555554433333 2222 112234445555566788888888888773 333344444 47888888888888888
Q ss_pred HHHhCCCCCCCCCchHHHHHHHH-HHHHhcCCHHHHHHHHHHHhhcCCC-ChhhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 038200 383 ILRKMPEDNDNMSFESIMWVSLL-SLCRFQGAVAMVERLAKSFVDMDPQ-DFSRYQFLLNVYAVAGQWEDVARVRELMKK 460 (523)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~g~~~~a~~~~~~~~~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 460 (523)
+|-.+.. ..++ +..+|.+++ .+|.+.+..+.|-.++-+.. .|. .......+++-|.+++.+=-|-+.|+.+..
T Consensus 415 lf~~is~--~~ik-n~~~Y~s~LArCyi~nkkP~lAW~~~lk~~--t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~ 489 (557)
T KOG3785|consen 415 LFIRISG--PEIK-NKILYKSMLARCYIRNKKPQLAWDMMLKTN--TPSERFSLLQLIANDCYKANEFYYAAKAFDELEI 489 (557)
T ss_pred HHhhhcC--hhhh-hhHHHHHHHHHHHHhcCCchHHHHHHHhcC--CchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHc
Confidence 8887772 2223 344454444 46677777777766543321 222 333455667778888888777777777755
Q ss_pred CCCccCCceeEEEeCC----eEEEEe--cCCCCchHHHHHHHHHHhcccCCcc
Q 038200 461 RRMGRMPGCRLVDLKE----VVEKLK--VGHFWRGGMKEEVNKMMECRQSRSL 507 (523)
Q Consensus 461 ~~~~~~~~~~~~~~~~----~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~ 507 (523)
. .|+|.. |.--.+ .....+ ..+|...+.+.++--+++..|+...
T Consensus 490 l--DP~pEn-WeGKRGACaG~f~~l~~~~~~~~p~~~~rEVvhllr~~~nsq~ 539 (557)
T KOG3785|consen 490 L--DPTPEN-WEGKRGACAGLFRQLANHKTDPIPISQMREVVHLLRMKPNSQC 539 (557)
T ss_pred c--CCCccc-cCCccchHHHHHHHHHcCCCCCCchhHHHHHHHHHHhCCCchH
Confidence 4 444432 111000 001111 2225666666666667777666543
No 70
>PF13041 PPR_2: PPR repeat family
Probab=99.30 E-value=8.5e-12 Score=79.88 Aligned_cols=50 Identities=36% Similarity=0.602 Sum_probs=44.6
Q ss_pred CChhHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc
Q 038200 182 RNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGR 231 (523)
Q Consensus 182 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 231 (523)
||+.+||++|.+|++.|++++|.++|++|.+.|+.||..||+.++++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 68889999999999999999999999999999999999999999988874
No 71
>PRK12370 invasion protein regulator; Provisional
Probab=99.29 E-value=7.8e-10 Score=110.66 Aligned_cols=228 Identities=13% Similarity=0.036 Sum_probs=171.7
Q ss_pred CHHHHHHHHHHHh-----ccccHHHHHHHHHHHHHcCCCCchHHHHHHhhhhh---------hcCChHHHHHHHHhcCC-
Q 038200 218 NDKTMASVLTACG-----RSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYS---------KCQKVEVAQRVFDSMAD- 282 (523)
Q Consensus 218 ~~~~~~~ll~~~~-----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~---------~~~~~~~a~~~~~~~~~- 282 (523)
+...|...+.+.. ..+++++|...|++..+... .+...+..+..+|. ..+++++|...+++..+
T Consensus 255 ~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ldP-~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~l 333 (553)
T PRK12370 255 SIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMSP-NSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATEL 333 (553)
T ss_pred ChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcCC-ccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhc
Confidence 4444555555431 23457899999999998642 24556666655543 23458899999998865
Q ss_pred --CChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcCCC-HHHHHHHHHHHhhcCcHHHHHHHHHHhhHhcCCCC
Q 038200 283 --RNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPD-EITFIGVICACVRAELLTEGRKYFRQMIDFYKIKP 359 (523)
Q Consensus 283 --~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 359 (523)
.+...+..+...+...|++++|...|++..+.. |+ ...+..+...+...|++++|...++++.+. .|
T Consensus 334 dP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-------P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l---~P 403 (553)
T PRK12370 334 DHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLS-------PISADIKYYYGWNLFMAGQLEEALQTINECLKL---DP 403 (553)
T ss_pred CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CC
Confidence 356788888889999999999999999999954 65 567888888999999999999999999874 34
Q ss_pred C-hHHHHHHHHHHHcCCChHHHHHHHHhCCCCCCCCCch-HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhhHHH
Q 038200 360 N-FAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFE-SIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQF 437 (523)
Q Consensus 360 ~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 437 (523)
+ ...+..++..+...|++++|.+.++++... ..|+ ...+..+..++...|+.++|...++++....|.+......
T Consensus 404 ~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~---~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~ 480 (553)
T PRK12370 404 TRAAAGITKLWITYYHTGIDDAIRLGDELRSQ---HLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNL 480 (553)
T ss_pred CChhhHHHHHHHHHhccCHHHHHHHHHHHHHh---ccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHH
Confidence 3 333344455567789999999999998743 2343 4445666677889999999999999988888877778888
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhC
Q 038200 438 LLNVYAVAGQWEDVARVRELMKKR 461 (523)
Q Consensus 438 l~~~~~~~g~~~~A~~~~~~m~~~ 461 (523)
+...|...| ++|...++.+.+.
T Consensus 481 l~~~~~~~g--~~a~~~l~~ll~~ 502 (553)
T PRK12370 481 LYAEYCQNS--ERALPTIREFLES 502 (553)
T ss_pred HHHHHhccH--HHHHHHHHHHHHH
Confidence 888888888 4888888877654
No 72
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.27 E-value=8.7e-09 Score=89.82 Aligned_cols=305 Identities=13% Similarity=0.033 Sum_probs=173.4
Q ss_pred HHHHHHHccCChHHHHHHHhhcCCCCcchHHHHHH---HHHhcCCHHHHHHHHhcCCC--CChhH-HHHHHHHHHhcCCc
Q 038200 127 SLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVS---GHVRSGDMSAAHELFDIMPE--RNVVS-WNIMISGYSKSGNP 200 (523)
Q Consensus 127 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~---~~~~~~~~~~a~~~~~~~~~--~~~~~-~~~li~~~~~~~~~ 200 (523)
-|...+...|++..|+.-|....+-|+..|.++.+ .|...|+...|+.-|++..+ ||-.. --.-...+.+.|.+
T Consensus 43 ElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vllK~Gel 122 (504)
T KOG0624|consen 43 ELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVLLKQGEL 122 (504)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhhhhcccH
Confidence 34455555666666666666666666665555543 35566666666666666554 33211 11112345667777
Q ss_pred hHHHHHHHHHHHCCCCCCH--------------HHHHHHHHHHhccccHHHHHHHHHHHHHcCCCCchHHHHHHhhhhhh
Q 038200 201 GCSLKLFREMMKSGFRGND--------------KTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSK 266 (523)
Q Consensus 201 ~~a~~~~~~m~~~~~~p~~--------------~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 266 (523)
+.|..-|+..++....-+. ......+..+...|+...|+.....+++.. +.+...+..-..+|..
T Consensus 123 e~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~-~Wda~l~~~Rakc~i~ 201 (504)
T KOG0624|consen 123 EQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQ-PWDASLRQARAKCYIA 201 (504)
T ss_pred HHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcC-cchhHHHHHHHHHHHh
Confidence 7777777776665311100 111223344556677777777777777653 4466777777777777
Q ss_pred cCChHHHHHHHHhcC---CCChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcCCCHHHHHHHHHHHhhcCcHHH
Q 038200 267 CQKVEVAQRVFDSMA---DRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTE 343 (523)
Q Consensus 267 ~~~~~~a~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~ 343 (523)
.|++..|+.-++... ..++.+.--+-..+...|+.+.++...++..+ +.||-..... .-+.+.+
T Consensus 202 ~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLK-------ldpdHK~Cf~------~YKklkK 268 (504)
T KOG0624|consen 202 EGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLK-------LDPDHKLCFP------FYKKLKK 268 (504)
T ss_pred cCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHc-------cCcchhhHHH------HHHHHHH
Confidence 777777776665543 34555666666666777777777777777776 3465431111 0111122
Q ss_pred HHHHHHHhhHhcCCCCChHHHHHHHHHHHcCCChHHHHHHHHhCCCCCCCCCc-hHHHHHHHHHHHHhcCCHHHHHHHHH
Q 038200 344 GRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSF-ESIMWVSLLSLCRFQGAVAMVERLAK 422 (523)
Q Consensus 344 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~ 422 (523)
..+.++.|.+ ..+.++|.++++..+...+......+ ....+..+-.++...|++.+|++...
T Consensus 269 v~K~les~e~-----------------~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~ 331 (504)
T KOG0624|consen 269 VVKSLESAEQ-----------------AIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCK 331 (504)
T ss_pred HHHHHHHHHH-----------------HHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHH
Confidence 2222222222 23456666666666665543211111 11223333344556677777777777
Q ss_pred HHhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 038200 423 SFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRR 462 (523)
Q Consensus 423 ~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 462 (523)
.+++++|+|..++..-+.+|.-..+|++|+.-|+...+.+
T Consensus 332 evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n 371 (504)
T KOG0624|consen 332 EVLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELN 371 (504)
T ss_pred HHHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcC
Confidence 7777777777777777777777777777777777665543
No 73
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.26 E-value=4.2e-08 Score=95.05 Aligned_cols=419 Identities=9% Similarity=0.053 Sum_probs=252.3
Q ss_pred HHHHhhccCCchhHHHHhccCCC--CCccc-HHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCcccHHHHHHHHH----c
Q 038200 27 LLKHSADFGSPDYTVLVFKCINN--PGTFC-VNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCA----K 99 (523)
Q Consensus 27 l~~~~~~~g~~~~A~~~~~~~~~--~~~~~-~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~----~ 99 (523)
...++...|++++|++.++.... .|..+ .......+.+.|+.++|..+|..+++.+ |+...|...+..+. .
T Consensus 10 ~~~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN--Pdn~~Yy~~L~~~~g~~~~ 87 (517)
T PF12569_consen 10 KNSILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN--PDNYDYYRGLEEALGLQLQ 87 (517)
T ss_pred HHHHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHhhhcc
Confidence 34567889999999999987553 45444 4566788999999999999999999975 77777666666655 1
Q ss_pred --cCCchHHHHHHHHHHHhCCCCCchHHHHHHHHHHccCCh-HHHHHHHhhcCCCCc-chHHHHHHHHHhcCCHHHHHHH
Q 038200 100 --TGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAM-DCARNMFVQMSPRDL-ISWNSIVSGHVRSGDMSAAHEL 175 (523)
Q Consensus 100 --~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~~~-~~~~~ll~~~~~~~~~~~a~~~ 175 (523)
..+.+...++++.+...-+ .......+.-.+..-..+ ..+...+..+....+ .+++.+-..|....+.+-..++
T Consensus 88 ~~~~~~~~~~~~y~~l~~~yp--~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~~~i~~l 165 (517)
T PF12569_consen 88 LSDEDVEKLLELYDELAEKYP--RSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPEKAAIIESL 165 (517)
T ss_pred cccccHHHHHHHHHHHHHhCc--cccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcChhHHHHHHHH
Confidence 1245677888888866532 222222121111111112 223333333333333 4555555555544444444444
Q ss_pred HhcCC------------------CCChh--HHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhcccc
Q 038200 176 FDIMP------------------ERNVV--SWNIMISGYSKSGNPGCSLKLFREMMKSGFRGN-DKTMASVLTACGRSAR 234 (523)
Q Consensus 176 ~~~~~------------------~~~~~--~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~ 234 (523)
+.... .|... ++..+...|...|++++|++++++.++. .|+ ...|..-.+.+-..|+
T Consensus 166 ~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h--tPt~~ely~~KarilKh~G~ 243 (517)
T PF12569_consen 166 VEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH--TPTLVELYMTKARILKHAGD 243 (517)
T ss_pred HHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHCCC
Confidence 44321 13332 4466678889999999999999999996 455 6688889999999999
Q ss_pred HHHHHHHHHHHHHcCCCCchHHHHHHhhhhhhcCChHHHHHHHHhcCCCCh----------HHH--HHHHHHHHhcCChH
Q 038200 235 FNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNL----------VCW--NAMILGHCIHGKPE 302 (523)
Q Consensus 235 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----------~~~--~~li~~~~~~g~~~ 302 (523)
+.+|.+.++....... .|..+-+..+..+.++|++++|.+++.....++. ..| .....+|.+.|++.
T Consensus 244 ~~~Aa~~~~~Ar~LD~-~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~ 322 (517)
T PF12569_consen 244 LKEAAEAMDEARELDL-ADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYG 322 (517)
T ss_pred HHHHHHHHHHHHhCCh-hhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 9999999999999864 3788888889999999999999999988866441 122 34567899999999
Q ss_pred HHHHHHHHHHhCCCCCCCcCCC----------HHHHHHHHHHHhhcC---c----HHHHHHHHHHhhHhcCCCC------
Q 038200 303 EGIKLFTALVNGTVAGGSISPD----------EITFIGVICACVRAE---L----LTEGRKYFRQMIDFYKIKP------ 359 (523)
Q Consensus 303 ~a~~~~~~m~~~~~~~~~~~p~----------~~~~~~ll~~~~~~~---~----~~~a~~~~~~~~~~~~~~~------ 359 (523)
.|++-|....+.-..-..-+-| ..+|..++...-+.. . ...|.++|-.+.+......
T Consensus 323 ~ALk~~~~v~k~f~~~~~DQfDFH~Yc~RK~t~r~Y~~~L~~ed~l~~~~~y~raa~~ai~iYl~l~d~~~~~~~~~~~~ 402 (517)
T PF12569_consen 323 LALKRFHAVLKHFDDFEEDQFDFHSYCLRKMTLRAYVDMLRWEDKLRSHPFYRRAAKGAIRIYLELHDKPEAKQGEEQEA 402 (517)
T ss_pred HHHHHHHHHHHHHHHHhcccccHHHHHHhhccHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhcCccccccccccc
Confidence 9988776654421000001112 223333333221111 1 2334455554444210000
Q ss_pred -----ChHHHHHHHHHH---HcCCChHHHHHHHHh-----------CC-CCCCCCCchHHHHHHHHHHHHhc-CCHHHHH
Q 038200 360 -----NFAHYWCMANLY---AGAELTEEAEEILRK-----------MP-EDNDNMSFESIMWVSLLSLCRFQ-GAVAMVE 418 (523)
Q Consensus 360 -----~~~~~~~l~~~~---~~~g~~~~A~~~~~~-----------~~-~~~~~~~~~~~~~~~l~~~~~~~-g~~~~a~ 418 (523)
+..-...+..-. .+...-+++...-.+ .. .......+|+. ...+... .-.++|.
T Consensus 403 ~~~~~~~~e~Kk~~kK~kK~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~Dp~-----GekL~~t~dPLe~A~ 477 (517)
T PF12569_consen 403 DNENMSAAERKKAKKKAKKAAKKAKKEEAEKAAKKEPKKQQNKSKKKEKVEPKKKDDDPL-----GEKLLKTEDPLEEAM 477 (517)
T ss_pred ccccCChHHHHHHHHHHHHHHHHHhHHHHHHHHhhhhhhhhccccccccccCCcCCCCcc-----HHHHhcCCcHHHHHH
Confidence 000001111100 111111111111100 00 00011122221 1122233 3478999
Q ss_pred HHHHHHhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHH
Q 038200 419 RLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVREL 457 (523)
Q Consensus 419 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 457 (523)
++++.+.+..|++..+|..-..+|.+.|++--|++.+.+
T Consensus 478 kfl~pL~~~a~~~~et~~laFeVy~Rk~K~LLaLqaL~k 516 (517)
T PF12569_consen 478 KFLKPLLELAPDNIETHLLAFEVYLRKGKYLLALQALKK 516 (517)
T ss_pred HHHHHHHHhCccchhhHHHHhHHHHhcCcHHHHHHHHHh
Confidence 999999999999999999999999999999998887653
No 74
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.24 E-value=1.6e-07 Score=87.98 Aligned_cols=408 Identities=10% Similarity=0.074 Sum_probs=221.5
Q ss_pred HHHhhccCCchhHHHHhccCC---CCCcccHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCcccHHHHHHHH--HccCC
Q 038200 28 LKHSADFGSPDYTVLVFKCIN---NPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSC--AKTGC 102 (523)
Q Consensus 28 ~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~--~~~~~ 102 (523)
++.+...|++++|.+...++. +.+...+.+-+-++.+.+.|++|+.+.+.-... ..+..-+ +=.+| .+.+.
T Consensus 19 ln~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~--~~~~~~~--fEKAYc~Yrlnk 94 (652)
T KOG2376|consen 19 LNRHGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGAL--LVINSFF--FEKAYCEYRLNK 94 (652)
T ss_pred HHHhccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchh--hhcchhh--HHHHHHHHHccc
Confidence 456667778888888777664 245556666677778888888888554432211 1111111 23333 36777
Q ss_pred chHHHHHHHHHHHhCCCC-CchHHHHHHHHHHccCChHHHHHHHhhcCCCCcchHHHHHHHHH-hcCCHHHHHHHHhcCC
Q 038200 103 VERGGMCHGLALKNGVDF-ELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHV-RSGDMSAAHELFDIMP 180 (523)
Q Consensus 103 ~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~-~~~~~~~a~~~~~~~~ 180 (523)
.++|+..++ |..+ +..+...-...+-+.|++++|..+|+.+.+.+...+..-+.+-+ ..+-.-.+. +.+..+
T Consensus 95 ~Dealk~~~-----~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~-~~q~v~ 168 (652)
T KOG2376|consen 95 LDEALKTLK-----GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQ-LLQSVP 168 (652)
T ss_pred HHHHHHHHh-----cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHH-HHHhcc
Confidence 888877776 2232 23355555666777888888888888886554444443333211 111111111 233333
Q ss_pred CCChhHHH---HHHHHHHhcCCchHHHHHHHHHHHCC-------CCC------CHH-HHHHHHHHHhccccHHHHHHHHH
Q 038200 181 ERNVVSWN---IMISGYSKSGNPGCSLKLFREMMKSG-------FRG------NDK-TMASVLTACGRSARFNEGRSVHG 243 (523)
Q Consensus 181 ~~~~~~~~---~li~~~~~~~~~~~a~~~~~~m~~~~-------~~p------~~~-~~~~ll~~~~~~~~~~~a~~~~~ 243 (523)
.....+|. .....+...|++.+|++++....+.+ -.- ... .-..+.-++...|+.++|..+|.
T Consensus 169 ~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~ 248 (652)
T KOG2376|consen 169 EVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYV 248 (652)
T ss_pred CCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHH
Confidence 32122222 22334455666666666666552211 000 000 11122333455666666666666
Q ss_pred HHHHcCCCCch----HHHHHHhhhhhh---------------------------------------------cCChHHHH
Q 038200 244 YTVRTSLKPNI----ILDTALIDLYSK---------------------------------------------CQKVEVAQ 274 (523)
Q Consensus 244 ~~~~~~~~~~~----~~~~~l~~~~~~---------------------------------------------~~~~~~a~ 274 (523)
..++.... |. ...|.|+.+-.. .+..+.+.
T Consensus 249 ~~i~~~~~-D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk~~q~r 327 (652)
T KOG2376|consen 249 DIIKRNPA-DEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTNKMDQVR 327 (652)
T ss_pred HHHHhcCC-CchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 66665422 22 112222211111 11222222
Q ss_pred HHHHhcCCCC-hHHHHHHHHHHH--hcCChHHHHHHHHHHHhCCCCCCCcCCCH--HHHHHHHHHHhhcCcHHHHHHHHH
Q 038200 275 RVFDSMADRN-LVCWNAMILGHC--IHGKPEEGIKLFTALVNGTVAGGSISPDE--ITFIGVICACVRAELLTEGRKYFR 349 (523)
Q Consensus 275 ~~~~~~~~~~-~~~~~~li~~~~--~~g~~~~a~~~~~~m~~~~~~~~~~~p~~--~~~~~ll~~~~~~~~~~~a~~~~~ 349 (523)
++........ ...+..++.... +.....++.+++....+.. |+. ......+......|+++.|.+++.
T Consensus 328 ~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~-------p~~s~~v~L~~aQl~is~gn~~~A~~il~ 400 (652)
T KOG2376|consen 328 ELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADGH-------PEKSKVVLLLRAQLKISQGNPEVALEILS 400 (652)
T ss_pred HHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccC-------CchhHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 2222222211 223333333322 2234667777777776643 443 455556677888999999999999
Q ss_pred --------HhhHhcCCCCChHHHHHHHHHHHcCCChHHHHHHHHhCCCC----CCCCCchHHHHHHHHHHHHhcCCHHHH
Q 038200 350 --------QMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPED----NDNMSFESIMWVSLLSLCRFQGAVAMV 417 (523)
Q Consensus 350 --------~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~g~~~~a 417 (523)
.+.+. +..| .+...++..+.+.++.+.|..++.+.+.. ..+-..-..++.-+...-.+.|+.++|
T Consensus 401 ~~~~~~~ss~~~~-~~~P--~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea 477 (652)
T KOG2376|consen 401 LFLESWKSSILEA-KHLP--GTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEA 477 (652)
T ss_pred HHhhhhhhhhhhh-ccCh--hHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHH
Confidence 55443 4444 55566778888877766666555544311 001111123444444455677999999
Q ss_pred HHHHHHHhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHH
Q 038200 418 ERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVREL 457 (523)
Q Consensus 418 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 457 (523)
...++++.+.+|++..+...++.+|++. +.+.|..+-+.
T Consensus 478 ~s~leel~k~n~~d~~~l~~lV~a~~~~-d~eka~~l~k~ 516 (652)
T KOG2376|consen 478 SSLLEELVKFNPNDTDLLVQLVTAYARL-DPEKAESLSKK 516 (652)
T ss_pred HHHHHHHHHhCCchHHHHHHHHHHHHhc-CHHHHHHHhhc
Confidence 9999999999999999999999999886 45666665443
No 75
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.24 E-value=7.7e-09 Score=94.76 Aligned_cols=232 Identities=11% Similarity=0.015 Sum_probs=151.0
Q ss_pred CCchHHHHHHHHHHHCC-CCCC--HHHHHHHHHHHhccccHHHHHHHHHHHHHcCCCCchHHHHHHhhhhhhcCChHHHH
Q 038200 198 GNPGCSLKLFREMMKSG-FRGN--DKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQ 274 (523)
Q Consensus 198 ~~~~~a~~~~~~m~~~~-~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 274 (523)
+..+.++..+.+++... ..|+ ...|..+...+...|+.++|...|++..+.. +.+...|+.+...+...|++++|.
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~ 118 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAY 118 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 45566666676666532 1222 3456677777888888888888888888864 335778888888888888888888
Q ss_pred HHHHhcCC--C-ChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcCCCHHHHHHHHHHHhhcCcHHHHHHHHHHh
Q 038200 275 RVFDSMAD--R-NLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQM 351 (523)
Q Consensus 275 ~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 351 (523)
..|++..+ | +..+|..+..++...|++++|.+.|++..+.. |+..........+...++.++|...|++.
T Consensus 119 ~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~-------P~~~~~~~~~~l~~~~~~~~~A~~~l~~~ 191 (296)
T PRK11189 119 EAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDD-------PNDPYRALWLYLAESKLDPKQAKENLKQR 191 (296)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHccCCHHHHHHHHHHH
Confidence 88888754 3 45678888888888999999999999988843 65432222222344567899999999776
Q ss_pred hHhcCCCCChHHHHHHHHHHHcCCChH--HHHHHHHhCCCCCCCCCc-hHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcC
Q 038200 352 IDFYKIKPNFAHYWCMANLYAGAELTE--EAEEILRKMPEDNDNMSF-ESIMWVSLLSLCRFQGAVAMVERLAKSFVDMD 428 (523)
Q Consensus 352 ~~~~~~~~~~~~~~~l~~~~~~~g~~~--~A~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 428 (523)
.. ...|+... ..+... ..|+.. ++.+.+.+..+......| ....|..+...+...|++++|...|+++.+.+
T Consensus 192 ~~--~~~~~~~~-~~~~~~--~lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~ 266 (296)
T PRK11189 192 YE--KLDKEQWG-WNIVEF--YLGKISEETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN 266 (296)
T ss_pred Hh--hCCccccH-HHHHHH--HccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 55 33333222 223333 344443 333333333221111122 24578888888999999999999999999998
Q ss_pred CCC-hhhHHHHHHHH
Q 038200 429 PQD-FSRYQFLLNVY 442 (523)
Q Consensus 429 p~~-~~~~~~l~~~~ 442 (523)
|.+ ++.-..++...
T Consensus 267 ~~~~~e~~~~~~e~~ 281 (296)
T PRK11189 267 VYNFVEHRYALLELA 281 (296)
T ss_pred CchHHHHHHHHHHHH
Confidence 754 33333344433
No 76
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.23 E-value=4.4e-08 Score=91.70 Aligned_cols=435 Identities=9% Similarity=-0.022 Sum_probs=204.5
Q ss_pred HHHHHhCCCchHHHHHHHHHHHCCCCCCcccHHHHHHHHHccCCchHHHHHHHHHHHhCCCCCchHHHHHHHHHHccCCh
Q 038200 59 IKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAM 138 (523)
Q Consensus 59 l~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 138 (523)
+.-+..++++++|++...++...+ +-|...+..-+-++.+.+.+++|+.+.+.-... ..+...+---.-+.-+.+..
T Consensus 19 ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~--~~~~~~~fEKAYc~Yrlnk~ 95 (652)
T KOG2376|consen 19 LNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNGAL--LVINSFFFEKAYCEYRLNKL 95 (652)
T ss_pred HHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchh--hhcchhhHHHHHHHHHcccH
Confidence 445566777777777777777654 444555666666667777777777443322110 11111111122233356667
Q ss_pred HHHHHHHhhcCCCCcchHHHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCC
Q 038200 139 DCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGN 218 (523)
Q Consensus 139 ~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~ 218 (523)
++|+..++.....|..+...-...+-+.|++++|..+|+.+.+.+...+...+.+-+..- ..+... +.+......|
T Consensus 96 Dealk~~~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~--~a~l~~-~~~q~v~~v~- 171 (652)
T KOG2376|consen 96 DEALKTLKGLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAV--AAALQV-QLLQSVPEVP- 171 (652)
T ss_pred HHHHHHHhcccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHH--HHhhhH-HHHHhccCCC-
Confidence 777776664443343344444455566666666666666665544333333322211100 000000 0122222222
Q ss_pred HHHHHHHHH---HHhccccHHHHHHHHHHHHHcCC-------CCch-------HHHHHHhhhhhhcCChHHHHHHHHhcC
Q 038200 219 DKTMASVLT---ACGRSARFNEGRSVHGYTVRTSL-------KPNI-------ILDTALIDLYSKCQKVEVAQRVFDSMA 281 (523)
Q Consensus 219 ~~~~~~ll~---~~~~~~~~~~a~~~~~~~~~~~~-------~~~~-------~~~~~l~~~~~~~~~~~~a~~~~~~~~ 281 (523)
..+|..+.+ .+...|++.+|+++++...+.+. ..+. .+-..|.-++-..|+-++|..+|..+.
T Consensus 172 e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i 251 (652)
T KOG2376|consen 172 EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDII 251 (652)
T ss_pred cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence 223333322 23456666666666666522110 0000 111223333444555566665555554
Q ss_pred CC---ChHHHHHHHH---HHHhcCChH--HHHHHHHHHHhCCCCCCC-----cCCCHHHHHHHHHHHhhcCcHHHHHHHH
Q 038200 282 DR---NLVCWNAMIL---GHCIHGKPE--EGIKLFTALVNGTVAGGS-----ISPDEITFIGVICACVRAELLTEGRKYF 348 (523)
Q Consensus 282 ~~---~~~~~~~li~---~~~~~g~~~--~a~~~~~~m~~~~~~~~~-----~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 348 (523)
+. |......... +.....++- .++..++........... -.-.....+..+-. ...+..+.+.++.
T Consensus 252 ~~~~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~-l~tnk~~q~r~~~ 330 (652)
T KOG2376|consen 252 KRNPADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLA-LFTNKMDQVRELS 330 (652)
T ss_pred HhcCCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH-HHhhhHHHHHHHH
Confidence 32 2222111111 011111110 111111111100000000 00000111111111 1123333333333
Q ss_pred HHhhHhcCCCCChHHHHHHHHHHH--cCCChHHHHHHHHhCCCCCCCCCch--HHHHHHHHHHHHhcCCHHHHHHHHH--
Q 038200 349 RQMIDFYKIKPNFAHYWCMANLYA--GAELTEEAEEILRKMPEDNDNMSFE--SIMWVSLLSLCRFQGAVAMVERLAK-- 422 (523)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~l~~~~~--~~g~~~~A~~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~-- 422 (523)
.... +..|.. .+..++.... +......|.+++....+. .|. ..+....+......|+++.|.+++.
T Consensus 331 a~lp---~~~p~~-~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~----~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~ 402 (652)
T KOG2376|consen 331 ASLP---GMSPES-LFPILLQEATKVREKKHKKAIELLLQFADG----HPEKSKVVLLLRAQLKISQGNPEVALEILSLF 402 (652)
T ss_pred HhCC---ccCchH-HHHHHHHHHHHHHHHHHhhhHHHHHHHhcc----CCchhHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 3332 223332 2333333322 223567788888877753 333 3444555566788999999999999
Q ss_pred ------HHhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCCcee-EEEeCCeEEEEecCCCCchHHHHHH
Q 038200 423 ------SFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCR-LVDLKEVVEKLKVGHFWRGGMKEEV 495 (523)
Q Consensus 423 ------~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l 495 (523)
.+.+..- .|.+...+...|.+.++.+-|..++.+..+.-....++.. ...+-.....|-.+.++.+++...+
T Consensus 403 ~~~~~ss~~~~~~-~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~l 481 (652)
T KOG2376|consen 403 LESWKSSILEAKH-LPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLL 481 (652)
T ss_pred hhhhhhhhhhhcc-ChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHH
Confidence 3333332 5678888888899999888888888877553222222210 0111122233434447899999999
Q ss_pred HHHHhcccCCccccc
Q 038200 496 NKMMECRQSRSLATV 510 (523)
Q Consensus 496 ~~~~~~~~~~~~~~~ 510 (523)
+++++.+|.+...+.
T Consensus 482 eel~k~n~~d~~~l~ 496 (652)
T KOG2376|consen 482 EELVKFNPNDTDLLV 496 (652)
T ss_pred HHHHHhCCchHHHHH
Confidence 999999999887665
No 77
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.22 E-value=3.7e-09 Score=100.95 Aligned_cols=194 Identities=13% Similarity=0.110 Sum_probs=127.2
Q ss_pred HHHHHHhcCCHHHHHHHHhcCCC-------C----ChhHHHHHHHHHHhcCCchHHHHHHHHHHHC-----CC-CCCH-H
Q 038200 159 IVSGHVRSGDMSAAHELFDIMPE-------R----NVVSWNIMISGYSKSGNPGCSLKLFREMMKS-----GF-RGND-K 220 (523)
Q Consensus 159 ll~~~~~~~~~~~a~~~~~~~~~-------~----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-----~~-~p~~-~ 220 (523)
+...|...+++++|..+|+++.. + -..+++.|..+|.+.|++++|..+++...+- |. .|.. .
T Consensus 247 ~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~ 326 (508)
T KOG1840|consen 247 LALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAA 326 (508)
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHH
Confidence 44455666666666666666542 1 2456788888899999999888887766432 21 1222 2
Q ss_pred HHHHHHHHHhccccHHHHHHHHHHHHHc---CCCC----chHHHHHHhhhhhhcCChHHHHHHHHhcCCC--------C-
Q 038200 221 TMASVLTACGRSARFNEGRSVHGYTVRT---SLKP----NIILDTALIDLYSKCQKVEVAQRVFDSMADR--------N- 284 (523)
Q Consensus 221 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~---~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--------~- 284 (523)
.++.+...|...+++++|..+++...+. -+.+ -..+++.|...|...|++++|.++|+++... +
T Consensus 327 ~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~ 406 (508)
T KOG1840|consen 327 QLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDY 406 (508)
T ss_pred HHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcCh
Confidence 3566677788888999998888866553 1111 2467888888888889988888888877431 1
Q ss_pred --hHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcCCC-HHHHHHHHHHHhhcCcHHHHHHHHHHhh
Q 038200 285 --LVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPD-EITFIGVICACVRAELLTEGRKYFRQMI 352 (523)
Q Consensus 285 --~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 352 (523)
-..++.|...|.+.+++.+|.++|.+...-...-+.-.|+ ..+|..|...|...|+++.|.++.+.+.
T Consensus 407 ~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 407 GVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred hhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 2456777888888888888888877654321000012233 3567777777777777777777766655
No 78
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.22 E-value=4.1e-07 Score=86.16 Aligned_cols=428 Identities=14% Similarity=0.101 Sum_probs=278.6
Q ss_pred hhHHHHHHHHhhccCCchhHHHHhccCC-----CCCcccHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCcccHHHHHH
Q 038200 21 SFWTINLLKHSADFGSPDYTVLVFKCIN-----NPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFG 95 (523)
Q Consensus 21 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~ 95 (523)
|..+-..+..+.++|++..-+++|+... ......|...+......+-++.++.+|++.++. .|.. -.-.+.
T Consensus 102 pRIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~--~P~~--~eeyie 177 (835)
T KOG2047|consen 102 PRIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV--APEA--REEYIE 177 (835)
T ss_pred CHHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc--CHHH--HHHHHH
Confidence 4455555666677888888888887643 234557888888888888899999999998863 3443 677788
Q ss_pred HHHccCCchHHHHHHHHHHHhC------CCCCchHHHHHHHHHHccCCh---HHHHHHHhhcCCC--C--cchHHHHHHH
Q 038200 96 SCAKTGCVERGGMCHGLALKNG------VDFELPVMNSLINMYGCFGAM---DCARNMFVQMSPR--D--LISWNSIVSG 162 (523)
Q Consensus 96 ~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~g~~---~~A~~~~~~~~~~--~--~~~~~~ll~~ 162 (523)
.++..+++++|.+.+...+... -+.+...|..+.+...+.-+. -....+++.+... | ...|++|...
T Consensus 178 ~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdY 257 (835)
T KOG2047|consen 178 YLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADY 257 (835)
T ss_pred HHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHH
Confidence 8888999999988888775421 133556677766666654332 2344555665532 3 3579999999
Q ss_pred HHhcCCHHHHHHHHhcCCC--CChhHHHHHHHHHHhc----------------CC------chHHHHHHHHHHHCC----
Q 038200 163 HVRSGDMSAAHELFDIMPE--RNVVSWNIMISGYSKS----------------GN------PGCSLKLFREMMKSG---- 214 (523)
Q Consensus 163 ~~~~~~~~~a~~~~~~~~~--~~~~~~~~li~~~~~~----------------~~------~~~a~~~~~~m~~~~---- 214 (523)
|.+.|.+++|..+|++... ..+.-|+.+.++|++- ++ ++-.+.-|+.+...+
T Consensus 258 YIr~g~~ekarDvyeeai~~v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~l 337 (835)
T KOG2047|consen 258 YIRSGLFEKARDVYEEAIQTVMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLL 337 (835)
T ss_pred HHHhhhhHHHHHHHHHHHHhheehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHH
Confidence 9999999999999988765 2333344444444321 11 222333444443332
Q ss_pred -------CCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHcCCCC------chHHHHHHhhhhhhcCChHHHHHHHHhcC
Q 038200 215 -------FRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKP------NIILDTALIDLYSKCQKVEVAQRVFDSMA 281 (523)
Q Consensus 215 -------~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 281 (523)
-+.+..+|..-.. ...|+..+....|.++++. +.| -...|..+...|-..|+++.|..+|++..
T Consensus 338 NsVlLRQn~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~ 414 (835)
T KOG2047|consen 338 NSVLLRQNPHNVEEWHKRVK--LYEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKAT 414 (835)
T ss_pred HHHHHhcCCccHHHHHhhhh--hhcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhh
Confidence 0112223332222 2346677777888888775 333 23568889999999999999999999987
Q ss_pred CCCh-------HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC------CCcCCCHH------HHHHHHHHHhhcCcHH
Q 038200 282 DRNL-------VCWNAMILGHCIHGKPEEGIKLFTALVNGTVAG------GSISPDEI------TFIGVICACVRAELLT 342 (523)
Q Consensus 282 ~~~~-------~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~------~~~~p~~~------~~~~ll~~~~~~~~~~ 342 (523)
+-+- .+|..-...=.++.+++.|+.+.++.......+ ++.++... .|...+..-...|-++
T Consensus 415 ~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfe 494 (835)
T KOG2047|consen 415 KVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFE 494 (835)
T ss_pred cCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHH
Confidence 7332 356666666678889999999998876643110 11122222 2334444445567888
Q ss_pred HHHHHHHHhhHhcCCCCChHHHHHHHHHHHcCCChHHHHHHHHhCCCCCCCCC-ch-HHHHHHHHHHHHh-c--CCHHHH
Q 038200 343 EGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMS-FE-SIMWVSLLSLCRF-Q--GAVAMV 417 (523)
Q Consensus 343 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~-~~~~~~l~~~~~~-~--g~~~~a 417 (523)
....+|+++.+. .+. ++.........+-...-++++.+++++-+.. ++ |+ ..+|+..+.-+.+ - ...+.|
T Consensus 495 stk~vYdriidL-ria-TPqii~NyAmfLEeh~yfeesFk~YErgI~L---Fk~p~v~diW~tYLtkfi~rygg~klEra 569 (835)
T KOG2047|consen 495 STKAVYDRIIDL-RIA-TPQIIINYAMFLEEHKYFEESFKAYERGISL---FKWPNVYDIWNTYLTKFIKRYGGTKLERA 569 (835)
T ss_pred HHHHHHHHHHHH-hcC-CHHHHHHHHHHHHhhHHHHHHHHHHHcCCcc---CCCccHHHHHHHHHHHHHHHhcCCCHHHH
Confidence 888999999885 332 3344334445566777889999999998753 22 33 4677777765433 2 358999
Q ss_pred HHHHHHHhhcCCCC-h-hhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 038200 418 ERLAKSFVDMDPQD-F-SRYQFLLNVYAVAGQWEDVARVRELMKK 460 (523)
Q Consensus 418 ~~~~~~~~~~~p~~-~-~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 460 (523)
..+|+++++.-|+. . ..|...+..=.+-|.-..|+.++++...
T Consensus 570 RdLFEqaL~~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~ 614 (835)
T KOG2047|consen 570 RDLFEQALDGCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATS 614 (835)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 99999999977742 2 2344444444556888889999887643
No 79
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.22 E-value=2.1e-07 Score=83.40 Aligned_cols=282 Identities=11% Similarity=0.035 Sum_probs=204.8
Q ss_pred HhcCCHHHHHHHHhcCCC-----CChhHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccccHHH
Q 038200 164 VRSGDMSAAHELFDIMPE-----RNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDK-TMASVLTACGRSARFNE 237 (523)
Q Consensus 164 ~~~~~~~~a~~~~~~~~~-----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~~~~~~ 237 (523)
+-.++...|.+++-.+.. .|+.....+...+...|+.++|...|++.+.. .|+.. ......-.+.+.|+.+.
T Consensus 207 ~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~--dpy~i~~MD~Ya~LL~~eg~~e~ 284 (564)
T KOG1174|consen 207 MFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCA--NPDNVEAMDLYAVLLGQEGGCEQ 284 (564)
T ss_pred HHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhC--ChhhhhhHHHHHHHHHhccCHhh
Confidence 344555555555544332 47788889999999999999999999988764 34332 22222233467788888
Q ss_pred HHHHHHHHHHcCCCCchHHHHHHhhhhhhcCChHHHHHHHHhcCCC---ChHHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 038200 238 GRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADR---NLVCWNAMILGHCIHGKPEEGIKLFTALVNG 314 (523)
Q Consensus 238 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 314 (523)
...+...+.... ..+...|-.-........+++.|+.+-++.... +...+-.-...+...|+.++|.-.|+..+..
T Consensus 285 ~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~L 363 (564)
T KOG1174|consen 285 DSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQML 363 (564)
T ss_pred HHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhc
Confidence 777777666542 123333333344445567899999998887663 4445555556788899999999999999884
Q ss_pred CCCCCCcCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhHhcCCCCChHHHHHHH-HHHH-cCCChHHHHHHHHhCCCCCC
Q 038200 315 TVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMA-NLYA-GAELTEEAEEILRKMPEDND 392 (523)
Q Consensus 315 ~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~-~~~~-~~g~~~~A~~~~~~~~~~~~ 392 (523)
. +-+...|..|+.+|...|++.+|...-+.... -++.+..+...+. ..+. ...--++|.+++++...
T Consensus 364 a------p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~--~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~--- 432 (564)
T KOG1174|consen 364 A------PYRLEIYRGLFHSYLAQKRFKEANALANWTIR--LFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLK--- 432 (564)
T ss_pred c------hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHH--HhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhc---
Confidence 2 34678999999999999999999988887776 4555666665552 3332 23344889999999885
Q ss_pred CCCch-HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 038200 393 NMSFE-SIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKR 461 (523)
Q Consensus 393 ~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 461 (523)
+.|+ ....+.+...|...|..+.+..++++.+...| |...++.|+..+...+.+.+|.+.|....+.
T Consensus 433 -~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~-D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~ 500 (564)
T KOG1174|consen 433 -INPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFP-DVNLHNHLGDIMRAQNEPQKAMEYYYKALRQ 500 (564)
T ss_pred -cCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhcc-ccHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 4665 44556677789999999999999999999888 5568999999999999999999999987543
No 80
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.21 E-value=4.6e-08 Score=94.75 Aligned_cols=291 Identities=13% Similarity=0.048 Sum_probs=194.3
Q ss_pred HHHHhcCCHHHHHHHHhcCCC--CCh-hHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHHHH-HHHHHHHhc-----
Q 038200 161 SGHVRSGDMSAAHELFDIMPE--RNV-VSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTM-ASVLTACGR----- 231 (523)
Q Consensus 161 ~~~~~~~~~~~a~~~~~~~~~--~~~-~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~-~~ll~~~~~----- 231 (523)
..+...|++++|++.++.-.. .|. .........+.+.|+.++|..+|..+++.+ |+...| ..+..+..-
T Consensus 12 ~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN--Pdn~~Yy~~L~~~~g~~~~~~ 89 (517)
T PF12569_consen 12 SILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN--PDNYDYYRGLEEALGLQLQLS 89 (517)
T ss_pred HHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHhhhcccc
Confidence 345567888888888876554 343 345566778888999999999999998875 555544 444444421
Q ss_pred cccHHHHHHHHHHHHHcCCCCchHHHHHHhhhhhhcCChH-HHHHHHHhcCCCCh-HHHHHHHHHHHhcCChHHHHHHHH
Q 038200 232 SARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVE-VAQRVFDSMADRNL-VCWNAMILGHCIHGKPEEGIKLFT 309 (523)
Q Consensus 232 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~a~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~a~~~~~ 309 (523)
..+.+...++|+.+...- |.......+.-.+.....+. .+..++..+...++ .+++.+-..|....+..-..+++.
T Consensus 90 ~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~~~i~~l~~ 167 (517)
T PF12569_consen 90 DEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPEKAAIIESLVE 167 (517)
T ss_pred cccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcChhHHHHHHHHHH
Confidence 235677778888776653 33333322322223222333 33444444444444 566666666665555555556666
Q ss_pred HHHhCCCCCC---------CcCCCH--HHHHHHHHHHhhcCcHHHHHHHHHHhhHhcCCCCChHHHHHHHHHHHcCCChH
Q 038200 310 ALVNGTVAGG---------SISPDE--ITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTE 378 (523)
Q Consensus 310 ~m~~~~~~~~---------~~~p~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 378 (523)
.........+ .-+|.. .++..+...|...|++++|++++++..+. .+..+..|..-.+.|-+.|+++
T Consensus 168 ~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h--tPt~~ely~~KarilKh~G~~~ 245 (517)
T PF12569_consen 168 EYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH--TPTLVELYMTKARILKHAGDLK 245 (517)
T ss_pred HHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHCCCHH
Confidence 5543311100 123443 35566677888999999999999999983 3334888999999999999999
Q ss_pred HHHHHHHhCCCCCCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcC--CC-C------hhhHHHHHHHHHhcCChh
Q 038200 379 EAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMD--PQ-D------FSRYQFLLNVYAVAGQWE 449 (523)
Q Consensus 379 ~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--p~-~------~~~~~~l~~~~~~~g~~~ 449 (523)
+|.+.++..... -..|..+-+.....+.+.|++++|...+..+...+ |. + .......+.+|.+.|++.
T Consensus 246 ~Aa~~~~~Ar~L---D~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~ 322 (517)
T PF12569_consen 246 EAAEAMDEAREL---DLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYG 322 (517)
T ss_pred HHHHHHHHHHhC---ChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 999999999864 24566776777778899999999999999987754 22 1 112345688999999999
Q ss_pred HHHHHHHHHHh
Q 038200 450 DVARVRELMKK 460 (523)
Q Consensus 450 ~A~~~~~~m~~ 460 (523)
.|++.|..+.+
T Consensus 323 ~ALk~~~~v~k 333 (517)
T PF12569_consen 323 LALKRFHAVLK 333 (517)
T ss_pred HHHHHHHHHHH
Confidence 99988877654
No 81
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.21 E-value=3.2e-09 Score=87.60 Aligned_cols=167 Identities=14% Similarity=0.052 Sum_probs=119.8
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcCCC-HHHHHHHHHHHhhcCcHHHHHHHHHHhhHhcCCCCChHHHH
Q 038200 287 CWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPD-EITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYW 365 (523)
Q Consensus 287 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 365 (523)
+...+..+|...|+...|..-+++.++.. |+ ..++..+...|.+.|..+.|.+.|++..+ --+-+..+.|
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~D-------Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAls--l~p~~GdVLN 107 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHD-------PSYYLAHLVRAHYYQKLGENDLADESYRKALS--LAPNNGDVLN 107 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-------cccHHHHHHHHHHHHHcCChhhHHHHHHHHHh--cCCCccchhh
Confidence 34556667777888888888888877743 44 45777777777788888888888887776 2333566677
Q ss_pred HHHHHHHcCCChHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhhHHHHHHHHHhc
Q 038200 366 CMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVA 445 (523)
Q Consensus 366 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 445 (523)
.....+|..|++++|...|++..... ...--..+|..+..+..+.|+.+.|...+++.++.+|+.+.....+.......
T Consensus 108 NYG~FLC~qg~~~eA~q~F~~Al~~P-~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~ 186 (250)
T COG3063 108 NYGAFLCAQGRPEEAMQQFERALADP-AYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKA 186 (250)
T ss_pred hhhHHHHhCCChHHHHHHHHHHHhCC-CCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhc
Confidence 77777778888888888888777421 12222456666666667778888888888888888888777788888888888
Q ss_pred CChhHHHHHHHHHHhCCC
Q 038200 446 GQWEDVARVRELMKKRRM 463 (523)
Q Consensus 446 g~~~~A~~~~~~m~~~~~ 463 (523)
|++..|..++++....+.
T Consensus 187 ~~y~~Ar~~~~~~~~~~~ 204 (250)
T COG3063 187 GDYAPARLYLERYQQRGG 204 (250)
T ss_pred ccchHHHHHHHHHHhccc
Confidence 888888888877766654
No 82
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.19 E-value=3.5e-09 Score=96.96 Aligned_cols=216 Identities=13% Similarity=0.107 Sum_probs=156.7
Q ss_pred ccccHHHHHHHHHHHHHcC-CCC--chHHHHHHhhhhhhcCChHHHHHHHHhcCC---CChHHHHHHHHHHHhcCChHHH
Q 038200 231 RSARFNEGRSVHGYTVRTS-LKP--NIILDTALIDLYSKCQKVEVAQRVFDSMAD---RNLVCWNAMILGHCIHGKPEEG 304 (523)
Q Consensus 231 ~~~~~~~a~~~~~~~~~~~-~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a 304 (523)
..+..+.+..-+.+++... ..| ....|..+...|...|+.++|...|++..+ .+...|+.+...+...|++++|
T Consensus 38 ~~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A 117 (296)
T PRK11189 38 PTLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAA 117 (296)
T ss_pred CchHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHH
Confidence 3456677777777777542 222 245678888899999999999999998854 3568999999999999999999
Q ss_pred HHHHHHHHhCCCCCCCcCCC-HHHHHHHHHHHhhcCcHHHHHHHHHHhhHhcCCCCChHHHHHHHHHHHcCCChHHHHHH
Q 038200 305 IKLFTALVNGTVAGGSISPD-EITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEI 383 (523)
Q Consensus 305 ~~~~~~m~~~~~~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 383 (523)
...|++..+. .|+ ..++..+..++...|++++|.+.|++..+. .|+..........+...++.++|.+.
T Consensus 118 ~~~~~~Al~l-------~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~---~P~~~~~~~~~~l~~~~~~~~~A~~~ 187 (296)
T PRK11189 118 YEAFDSVLEL-------DPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD---DPNDPYRALWLYLAESKLDPKQAKEN 187 (296)
T ss_pred HHHHHHHHHh-------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHccCCHHHHHHH
Confidence 9999999984 465 667888888899999999999999999874 34332222222334567889999999
Q ss_pred HHhCCCCCCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHh-------hcCCCChhhHHHHHHHHHhcCChhHHHHHHH
Q 038200 384 LRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFV-------DMDPQDFSRYQFLLNVYAVAGQWEDVARVRE 456 (523)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~-------~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 456 (523)
+++.... ..|+...+ .+ .....|+...+ ..++.+. ++.|+.+.+|..++.++.+.|++++|...|+
T Consensus 188 l~~~~~~---~~~~~~~~-~~--~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~ 260 (296)
T PRK11189 188 LKQRYEK---LDKEQWGW-NI--VEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFK 260 (296)
T ss_pred HHHHHhh---CCccccHH-HH--HHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 9775532 23332222 22 22334554333 2333333 4556677899999999999999999999999
Q ss_pred HHHhCCC
Q 038200 457 LMKKRRM 463 (523)
Q Consensus 457 ~m~~~~~ 463 (523)
+..+.++
T Consensus 261 ~Al~~~~ 267 (296)
T PRK11189 261 LALANNV 267 (296)
T ss_pred HHHHhCC
Confidence 9977553
No 83
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.16 E-value=1.8e-07 Score=80.24 Aligned_cols=280 Identities=12% Similarity=0.082 Sum_probs=143.3
Q ss_pred cCCHHHHHHHHhcCCC-CChhHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHHH
Q 038200 166 SGDMSAAHELFDIMPE-RNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGY 244 (523)
Q Consensus 166 ~~~~~~a~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 244 (523)
.+|+..+..++++.+. .+..+.+.......+.|+++.|.+-|+...+-+---....|+..+ +..+.++.+.|.+...+
T Consensus 125 e~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpllAYniAL-aHy~~~qyasALk~iSE 203 (459)
T KOG4340|consen 125 EGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLAL-AHYSSRQYASALKHISE 203 (459)
T ss_pred cccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHHHHhhcCCCchhHHHHHH-HHHhhhhHHHHHHHHHH
Confidence 3444444455554442 333444444444444555555555555444432222223343332 23344445555555555
Q ss_pred HHHcCCCC-------------c---------------hHHHHHHhhhhhhcCChHHHHHHHHhcCC-----CChHHHHHH
Q 038200 245 TVRTSLKP-------------N---------------IILDTALIDLYSKCQKVEVAQRVFDSMAD-----RNLVCWNAM 291 (523)
Q Consensus 245 ~~~~~~~~-------------~---------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~l 291 (523)
++++|+.. | +..+|.-...+.+.++++.|.+.+-.|+. .|++|...+
T Consensus 204 IieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~ 283 (459)
T KOG4340|consen 204 IIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQ 283 (459)
T ss_pred HHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHH
Confidence 44443211 0 12233334455678999999999999976 366776655
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCCCcCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhHhcCCC-CChHHHHHHHHH
Q 038200 292 ILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIK-PNFAHYWCMANL 370 (523)
Q Consensus 292 i~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~l~~~ 370 (523)
.-.- ..+++.+..+-+.-+.... +-...||..++-.||+..-++.|-.++-+-... ... .+...|+.|=..
T Consensus 284 Al~n-~~~~p~~g~~KLqFLL~~n------PfP~ETFANlLllyCKNeyf~lAADvLAEn~~l-Tyk~L~~Yly~LLdaL 355 (459)
T KOG4340|consen 284 ALMN-MDARPTEGFEKLQFLLQQN------PFPPETFANLLLLYCKNEYFDLAADVLAENAHL-TYKFLTPYLYDLLDAL 355 (459)
T ss_pred HHhc-ccCCccccHHHHHHHHhcC------CCChHHHHHHHHHHhhhHHHhHHHHHHhhCcch-hHHHhhHHHHHHHHHH
Confidence 4332 2344555555555555543 234569999999999999999998888765432 111 244555533333
Q ss_pred HHcCCChHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHhcCC---HHHHHHHHHHHhhcCCCChhhHHHHHHHHHhcCC
Q 038200 371 YAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGA---VAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQ 447 (523)
Q Consensus 371 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 447 (523)
-...-..++|++-+..+... ..-.......-+.--....+ ...+.+-++...++-- .+...-++.|.+..+
T Consensus 356 It~qT~pEea~KKL~~La~~---l~~kLRklAi~vQe~r~~~dd~a~R~ai~~Yd~~LE~YL---PVlMa~AkiyW~~~D 429 (459)
T KOG4340|consen 356 ITCQTAPEEAFKKLDGLAGM---LTEKLRKLAIQVQEARHNRDDEAIRKAVNEYDETLEKYL---PVLMAQAKIYWNLED 429 (459)
T ss_pred HhCCCCHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHH---HHHHHHHHhhccccc
Confidence 33445677777666555421 00000011111111112222 2222333333333211 145556677888899
Q ss_pred hhHHHHHHHHHHh
Q 038200 448 WEDVARVRELMKK 460 (523)
Q Consensus 448 ~~~A~~~~~~m~~ 460 (523)
+.-+.++|..-.+
T Consensus 430 y~~vEk~Fr~Sve 442 (459)
T KOG4340|consen 430 YPMVEKIFRKSVE 442 (459)
T ss_pred cHHHHHHHHHHHh
Confidence 9999999886543
No 84
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.14 E-value=3.3e-08 Score=81.73 Aligned_cols=202 Identities=11% Similarity=0.109 Sum_probs=145.6
Q ss_pred HHHHHHHHHhccccHHHHHHHHHHHHHcCCCCchHHHHHHhhhhhhcCChHHHHHHHHhcCC---CChHHHHHHHHHHHh
Q 038200 221 TMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMAD---RNLVCWNAMILGHCI 297 (523)
Q Consensus 221 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~ 297 (523)
+...+.-.|...|+...|..-+++.++.. +.+..++..+...|.+.|+.+.|.+.|++... .+-.+.|....-+|.
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~ 115 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCA 115 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHh
Confidence 34455666777777777777777777764 22456777777777778888888777777643 345667777777888
Q ss_pred cCChHHHHHHHHHHHhCCCCCCCcCC-CHHHHHHHHHHHhhcCcHHHHHHHHHHhhHhcCCCCChHHHHHHHHHHHcCCC
Q 038200 298 HGKPEEGIKLFTALVNGTVAGGSISP-DEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAEL 376 (523)
Q Consensus 298 ~g~~~~a~~~~~~m~~~~~~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 376 (523)
.|++++|...|++..... .-| ...+|..+.-+..+.|+.+.|..+|++..+. .+-.+.....+.....+.|+
T Consensus 116 qg~~~eA~q~F~~Al~~P-----~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~--dp~~~~~~l~~a~~~~~~~~ 188 (250)
T COG3063 116 QGRPEEAMQQFERALADP-----AYGEPSDTLENLGLCALKAGQFDQAEEYLKRALEL--DPQFPPALLELARLHYKAGD 188 (250)
T ss_pred CCChHHHHHHHHHHHhCC-----CCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHh--CcCCChHHHHHHHHHHhccc
Confidence 888888888888887754 222 3457777777778888888888888888773 33345666777888888888
Q ss_pred hHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChh
Q 038200 377 TEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFS 433 (523)
Q Consensus 377 ~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 433 (523)
+..|...++..... ..+....+...+..-...|+.+.+.++-.++...-|.++.
T Consensus 189 y~~Ar~~~~~~~~~---~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~s~e 242 (250)
T COG3063 189 YAPARLYLERYQQR---GGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPYSEE 242 (250)
T ss_pred chHHHHHHHHHHhc---ccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHH
Confidence 88888888887743 3466666666677777788888888888887777776543
No 85
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.14 E-value=7.8e-08 Score=89.22 Aligned_cols=400 Identities=10% Similarity=0.029 Sum_probs=201.7
Q ss_pred HhhccCCchhHHHHhccC---CCCCcccHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCc-ccHHHHHHHHHccCCchH
Q 038200 30 HSADFGSPDYTVLVFKCI---NNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNS-YTFVSLFGSCAKTGCVER 105 (523)
Q Consensus 30 ~~~~~g~~~~A~~~~~~~---~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~-~~~~~ll~~~~~~~~~~~ 105 (523)
.....|+++.|+.+|-+. .++|.+.|+.=..+|+..|++++|++=-.+-++. .|+- -.|+....++...|++++
T Consensus 11 aa~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l--~p~w~kgy~r~Gaa~~~lg~~~e 88 (539)
T KOG0548|consen 11 AAFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRL--NPDWAKGYSRKGAALFGLGDYEE 88 (539)
T ss_pred hhcccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhc--CCchhhHHHHhHHHHHhcccHHH
Confidence 445679999999999764 3578888998999999999999998876666653 5664 478999999999999999
Q ss_pred HHHHHHHHHHhCCCCCchHHHHHHHHHHccCChHHHHHHHh------hcC-CC------CcchHHHHHHHH---------
Q 038200 106 GGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFV------QMS-PR------DLISWNSIVSGH--------- 163 (523)
Q Consensus 106 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~------~~~-~~------~~~~~~~ll~~~--------- 163 (523)
|+..|..-++..+. +...++.|..++... . .+.+.|. .+. .| ....|..++..+
T Consensus 89 A~~ay~~GL~~d~~-n~~L~~gl~~a~~~~--~-~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~ 164 (539)
T KOG0548|consen 89 AILAYSEGLEKDPS-NKQLKTGLAQAYLED--Y-AADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKL 164 (539)
T ss_pred HHHHHHHHhhcCCc-hHHHHHhHHHhhhHH--H-HhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhc
Confidence 99999998887533 667778888777211 1 1111111 000 00 111222222221
Q ss_pred -HhcCCHHHHHHHHhcCCCCChhHHHHHHHHHH-hcCCch----HHHHHHHHHHH-CCCCCCHHHHHHHHHHHhccccHH
Q 038200 164 -VRSGDMSAAHELFDIMPERNVVSWNIMISGYS-KSGNPG----CSLKLFREMMK-SGFRGNDKTMASVLTACGRSARFN 236 (523)
Q Consensus 164 -~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~-~~~~~~----~a~~~~~~m~~-~~~~p~~~~~~~ll~~~~~~~~~~ 236 (523)
.....+..+.-.+.....+ .+...-.... ....+. .......++.+ ....--..-...+.++..+..+++
T Consensus 165 ~l~d~r~m~a~~~l~~~~~~---~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~ 241 (539)
T KOG0548|consen 165 YLNDPRLMKADGQLKGVDEL---LFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFE 241 (539)
T ss_pred ccccHHHHHHHHHHhcCccc---cccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHH
Confidence 1111111111111111000 0000000000 000000 00000000000 000001122344555566666667
Q ss_pred HHHHHHHHHHHcCCCCchHHHHHHhhhhhhcCChHHHHHHHHhcCCCCh----------HHHHHHHHHHHhcCChHHHHH
Q 038200 237 EGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNL----------VCWNAMILGHCIHGKPEEGIK 306 (523)
Q Consensus 237 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----------~~~~~li~~~~~~g~~~~a~~ 306 (523)
.+.+.+....... .++.-++....+|...|.+..+........+.+- .....+..+|.+.++++.++.
T Consensus 242 ~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k~~~~~~ai~ 319 (539)
T KOG0548|consen 242 TAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAYTKREDYEGAIK 319 (539)
T ss_pred HHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHH
Confidence 7777776666654 3555556666666666666666655555433211 112223345566667777777
Q ss_pred HHHHHHhCCCCCCCcCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhHhcCCCCCh-HHHHHHHHHHHcCCChHHHHHHHH
Q 038200 307 LFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNF-AHYWCMANLYAGAELTEEAEEILR 385 (523)
Q Consensus 307 ~~~~m~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~ 385 (523)
.|.+..... ..|+..+ +....+++....+...- +.|.. .-...-...+.+.|++..|+..|.
T Consensus 320 ~~~kaLte~-----Rt~~~ls---------~lk~~Ek~~k~~e~~a~---~~pe~A~e~r~kGne~Fk~gdy~~Av~~Yt 382 (539)
T KOG0548|consen 320 YYQKALTEH-----RTPDLLS---------KLKEAEKALKEAERKAY---INPEKAEEEREKGNEAFKKGDYPEAVKHYT 382 (539)
T ss_pred HHHHHhhhh-----cCHHHHH---------HHHHHHHHHHHHHHHHh---hChhHHHHHHHHHHHHHhccCHHHHHHHHH
Confidence 777766654 3333221 11222333332222221 12221 111111344455566666666666
Q ss_pred hCCCCCCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 038200 386 KMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKK 460 (523)
Q Consensus 386 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 460 (523)
+++.. .+-|...|.....+|.+.|.+..|..-.+..++++|+....|..-+.++....+|++|.+.|++-.+
T Consensus 383 eAIkr---~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale 454 (539)
T KOG0548|consen 383 EAIKR---DPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALE 454 (539)
T ss_pred HHHhc---CCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 65543 2334555555555556666666666666666666665555555555555556666666666555443
No 86
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.10 E-value=5.5e-09 Score=94.19 Aligned_cols=252 Identities=13% Similarity=0.050 Sum_probs=151.2
Q ss_pred HHHHhcCCHHHHHHHHhcCCC--C--ChhHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHH
Q 038200 161 SGHVRSGDMSAAHELFDIMPE--R--NVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFN 236 (523)
Q Consensus 161 ~~~~~~~~~~~a~~~~~~~~~--~--~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~ 236 (523)
+-+.-.|++..++.-.+ ... + +......+.+++...|+++.++ .+.... -.|.......+...+...++-+
T Consensus 9 rn~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~-~~~~l~av~~la~y~~~~~~~e 83 (290)
T PF04733_consen 9 RNQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVL---SEIKKS-SSPELQAVRLLAEYLSSPSDKE 83 (290)
T ss_dssp HHHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-TT-SSCCCHHHHHHHHHHCTSTTHH
T ss_pred HHHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHH---HHhccC-CChhHHHHHHHHHHHhCccchH
Confidence 33455688888875554 211 1 2334455667788888766544 333333 2666666666666555544555
Q ss_pred HHHHHHHHHHHcCCC-CchHHHHHHhhhhhhcCChHHHHHHHHhcCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 038200 237 EGRSVHGYTVRTSLK-PNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGT 315 (523)
Q Consensus 237 ~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 315 (523)
.+..-++........ .+..+......++...|++++|++++... .+.......+..|.+.++++.|.+.++.|.+.
T Consensus 84 ~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~--~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~- 160 (290)
T PF04733_consen 84 SALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG--GSLELLALAVQILLKMNRPDLAEKELKNMQQI- 160 (290)
T ss_dssp CHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT--TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-
T ss_pred HHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc--CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhc-
Confidence 555444443333222 23333333445666778888888877765 45666667778888888888888888888763
Q ss_pred CCCCCcCCCHHHHHHHHHHHhh----cCcHHHHHHHHHHhhHhcCCCCChHHHHHHHHHHHcCCChHHHHHHHHhCCCCC
Q 038200 316 VAGGSISPDEITFIGVICACVR----AELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDN 391 (523)
Q Consensus 316 ~~~~~~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 391 (523)
..|. +...+..++.. .+.+.+|..+|+++.+ ...+++.+.+.+..+....|++++|.+++++..+.
T Consensus 161 ------~eD~-~l~qLa~awv~l~~g~e~~~~A~y~f~El~~--~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~- 230 (290)
T PF04733_consen 161 ------DEDS-ILTQLAEAWVNLATGGEKYQDAFYIFEELSD--KFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEK- 230 (290)
T ss_dssp ------SCCH-HHHHHHHHHHHHHHTTTCCCHHHHHHHHHHC--CS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-
T ss_pred ------CCcH-HHHHHHHHHHHHHhCchhHHHHHHHHHHHHh--ccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh-
Confidence 2443 34444444332 2357788888888776 45667777777888888888888888888877654
Q ss_pred CCCCchHHHHHHHHHHHHhcCCH-HHHHHHHHHHhhcCCCCh
Q 038200 392 DNMSFESIMWVSLLSLCRFQGAV-AMVERLAKSFVDMDPQDF 432 (523)
Q Consensus 392 ~~~~~~~~~~~~l~~~~~~~g~~-~~a~~~~~~~~~~~p~~~ 432 (523)
.+-+..++..++......|+. +.+.+++.++....|+++
T Consensus 231 --~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p~h~ 270 (290)
T PF04733_consen 231 --DPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQSNPNHP 270 (290)
T ss_dssp ---CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTTTSH
T ss_pred --ccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHhCCCCh
Confidence 233555666666666666766 667777787777777654
No 87
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.10 E-value=1.8e-08 Score=90.93 Aligned_cols=247 Identities=14% Similarity=0.052 Sum_probs=163.6
Q ss_pred HHHHhcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHcCCCCchHHHHHHhhhhhhcCChH
Q 038200 192 SGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVE 271 (523)
Q Consensus 192 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 271 (523)
+-+.-.|++..++.-.+ ........+......+.+++...|+.+.+. ..+.... .|.......+...+...++-+
T Consensus 9 rn~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~~e 83 (290)
T PF04733_consen 9 RNQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSDKE 83 (290)
T ss_dssp HHHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTTHH
T ss_pred HHHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccchH
Confidence 34455788888886555 222221223445567778888888876543 3333333 566666666666555545667
Q ss_pred HHHHHHHhcCC-C----ChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcCCCHHHHHHHHHHHhhcCcHHHHHH
Q 038200 272 VAQRVFDSMAD-R----NLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRK 346 (523)
Q Consensus 272 ~a~~~~~~~~~-~----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~ 346 (523)
.+..-+++... + +..........+...|++++|++++.+- .+.......+..|.+.++++.|.+
T Consensus 84 ~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~-----------~~lE~~al~Vqi~L~~~R~dlA~k 152 (290)
T PF04733_consen 84 SALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG-----------GSLELLALAVQILLKMNRPDLAEK 152 (290)
T ss_dssp CHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT-----------TCHHHHHHHHHHHHHTT-HHHHHH
T ss_pred HHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc-----------CcccHHHHHHHHHHHcCCHHHHHH
Confidence 77777765433 2 2222222334566789999998887532 345566677888999999999999
Q ss_pred HHHHhhHhcCCCCChHHHHHHHHH----HHcCCChHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHhcCCHHHHHHHHH
Q 038200 347 YFRQMIDFYKIKPNFAHYWCMANL----YAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAK 422 (523)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~l~~~----~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 422 (523)
.++.|.+ +..|. +...|..+ +.-.+.+.+|.-+|+++.+. ..++..+.+.+..++...|++++|+.+++
T Consensus 153 ~l~~~~~---~~eD~-~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~---~~~t~~~lng~A~~~l~~~~~~eAe~~L~ 225 (290)
T PF04733_consen 153 ELKNMQQ---IDEDS-ILTQLAEAWVNLATGGEKYQDAFYIFEELSDK---FGSTPKLLNGLAVCHLQLGHYEEAEELLE 225 (290)
T ss_dssp HHHHHHC---CSCCH-HHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC---S--SHHHHHHHHHHHHHCT-HHHHHHHHH
T ss_pred HHHHHHh---cCCcH-HHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc---cCCCHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 9999876 33342 33334433 33345789999999998754 56778888888888999999999999999
Q ss_pred HHhhcCCCChhhHHHHHHHHHhcCCh-hHHHHHHHHHHhC
Q 038200 423 SFVDMDPQDFSRYQFLLNVYAVAGQW-EDVARVRELMKKR 461 (523)
Q Consensus 423 ~~~~~~p~~~~~~~~l~~~~~~~g~~-~~A~~~~~~m~~~ 461 (523)
++.+.+|.++.++..++.+....|+. +.+.+++.++++.
T Consensus 226 ~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~ 265 (290)
T PF04733_consen 226 EALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQS 265 (290)
T ss_dssp HHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHH
T ss_pred HHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHh
Confidence 99999999999999999999999988 5577788887664
No 88
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.05 E-value=2.1e-07 Score=90.06 Aligned_cols=414 Identities=11% Similarity=-0.009 Sum_probs=241.6
Q ss_pred HHHCCCCCCcccHHHHHHHHHccCCchHHHHHHHHHHHhCCCCCchHHHHHHHHHHccCChHHHHHHHhhcCCCC--c--
Q 038200 78 MIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRD--L-- 153 (523)
Q Consensus 78 m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~-- 153 (523)
+....+..|...|..+.-+....|++..+-+.|++.....+. ....|+.+...|..+|.-..|..+++.-..+. +
T Consensus 314 ~r~~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~-~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~ 392 (799)
T KOG4162|consen 314 LRLKKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFG-EHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSD 392 (799)
T ss_pred HHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhh-hHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCc
Confidence 334446677788888888888888888888888887765443 66778888888888888888888887765322 2
Q ss_pred -chHHHHHHHHH-hcCCHHHHHHHHhcCCC--------CChhHHHHHHHHHHhc-----------CCchHHHHHHHHHHH
Q 038200 154 -ISWNSIVSGHV-RSGDMSAAHELFDIMPE--------RNVVSWNIMISGYSKS-----------GNPGCSLKLFREMMK 212 (523)
Q Consensus 154 -~~~~~ll~~~~-~~~~~~~a~~~~~~~~~--------~~~~~~~~li~~~~~~-----------~~~~~a~~~~~~m~~ 212 (523)
..+-..-..|. +.+.+++++..-.++.. -....|..+.-+|... ....++++.+++.++
T Consensus 393 ~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~ 472 (799)
T KOG4162|consen 393 ISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQ 472 (799)
T ss_pred chHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHh
Confidence 22222222232 33555555444444332 2233444444444321 123466777777776
Q ss_pred CCC-CCCHHHHHHHHHHHhccccHHHHHHHHHHHHHcCCCCchHHHHHHhhhhhhcCChHHHHHHHHhcCCC---ChHHH
Q 038200 213 SGF-RGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADR---NLVCW 288 (523)
Q Consensus 213 ~~~-~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~ 288 (523)
.+. .|+...| +.--|+-.++++.|.+...+..+.+...+...|..|.-.+...+++.+|+.+.+...+. |....
T Consensus 473 ~d~~dp~~if~--lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~ 550 (799)
T KOG4162|consen 473 FDPTDPLVIFY--LALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLM 550 (799)
T ss_pred cCCCCchHHHH--HHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhc
Confidence 542 2333333 33346667788888888888888765667788888888888888888888887765431 11111
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCCC-----------------C-CCCc---CC--CHHHHHHHHHHHhhcCcHHHHH
Q 038200 289 NAMILGHCIHGKPEEGIKLFTALVNGTV-----------------A-GGSI---SP--DEITFIGVICACVRAELLTEGR 345 (523)
Q Consensus 289 ~~li~~~~~~g~~~~a~~~~~~m~~~~~-----------------~-~~~~---~p--~~~~~~~ll~~~~~~~~~~~a~ 345 (523)
..-+..-..-++.++++.....+...-. . +.+. .| ...++..+..-....+....-.
T Consensus 551 ~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se 630 (799)
T KOG4162|consen 551 DGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSE 630 (799)
T ss_pred hhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccc
Confidence 1111111123444444333222221100 0 0000 11 1122222222111110000000
Q ss_pred HHHHHhhHhcCCCCCh--------HHHHHHHHHHHcCCChHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHhcCCHHHH
Q 038200 346 KYFRQMIDFYKIKPNF--------AHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMV 417 (523)
Q Consensus 346 ~~~~~~~~~~~~~~~~--------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 417 (523)
.. +.. ..+.|++ ..|......+.+.+..++|...+.+.... .+-....|......+...|+.++|
T Consensus 631 ~~---Lp~-s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~---~~l~~~~~~~~G~~~~~~~~~~EA 703 (799)
T KOG4162|consen 631 LK---LPS-STVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKI---DPLSASVYYLRGLLLEVKGQLEEA 703 (799)
T ss_pred cc---cCc-ccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhc---chhhHHHHHHhhHHHHHHHhhHHH
Confidence 00 111 1222322 34556677788999999999888888743 233455666666678888999999
Q ss_pred HHHHHHHhhcCCCChhhHHHHHHHHHhcCChhHHHH--HHHHHHhCCCccCCce--eEEEeCCeEEEEecCCCCchHHHH
Q 038200 418 ERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVAR--VRELMKKRRMGRMPGC--RLVDLKEVVEKLKVGHFWRGGMKE 493 (523)
Q Consensus 418 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~--~~~~m~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 493 (523)
.+.|..+..++|+++.+...++.++.+.|+..-|.. ++..+.+.+ |.+ -|..+ +......++.+++.+
T Consensus 704 ~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~d----p~n~eaW~~L----G~v~k~~Gd~~~Aae 775 (799)
T KOG4162|consen 704 KEAFLVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLD----PLNHEAWYYL----GEVFKKLGDSKQAAE 775 (799)
T ss_pred HHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhC----CCCHHHHHHH----HHHHHHccchHHHHH
Confidence 999999999999999999999999999998887777 888886654 322 12211 222233355666777
Q ss_pred HHHHHHhcccCCcccc
Q 038200 494 EVNKMMECRQSRSLAT 509 (523)
Q Consensus 494 ~l~~~~~~~~~~~~~~ 509 (523)
.....++++++++.-.
T Consensus 776 cf~aa~qLe~S~PV~p 791 (799)
T KOG4162|consen 776 CFQAALQLEESNPVLP 791 (799)
T ss_pred HHHHHHhhccCCCccc
Confidence 7777777766665543
No 89
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=99.04 E-value=9.4e-07 Score=86.06 Aligned_cols=235 Identities=11% Similarity=0.034 Sum_probs=148.0
Q ss_pred CChhHHHHHHH--HhhccCCchhHHHHhccCCCCCcccHHHHHHHHHhCCCchHHHHHHHHHHHC-C-------C-CCCc
Q 038200 19 NNSFWTINLLK--HSADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKN-G-------F-MPNS 87 (523)
Q Consensus 19 ~~~~~~~~l~~--~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~-~-------~-~p~~ 87 (523)
=|+.+-.++++ .|.--|+.+.|.+..+.+++ ...|..|.+.|.+.++.+-|.-.+-.|... | . .|+
T Consensus 724 Cd~~TRkaml~FSfyvtiG~MD~AfksI~~IkS--~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~- 800 (1416)
T KOG3617|consen 724 CDESTRKAMLDFSFYVTIGSMDAAFKSIQFIKS--DSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE- 800 (1416)
T ss_pred cCHHHHHhhhceeEEEEeccHHHHHHHHHHHhh--hHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-
Confidence 45666666664 67788999999888776654 467999999999999999888877777531 1 1 222
Q ss_pred ccHHHHHHHHHccCCchHHHHHHHHHHHhCCCCCchHHHHHHHHHHccCChHHHHHHHhhcCCC-CcchHHHHHHHHHhc
Q 038200 88 YTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPR-DLISWNSIVSGHVRS 166 (523)
Q Consensus 88 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~ll~~~~~~ 166 (523)
.+=..+.-.....|.+++|+.+|.+..+.. .|=..|-..|.+++|.++-+.-..- -..||......+-..
T Consensus 801 e~eakvAvLAieLgMlEeA~~lYr~ckR~D---------LlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lear 871 (1416)
T KOG3617|consen 801 EDEAKVAVLAIELGMLEEALILYRQCKRYD---------LLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEAR 871 (1416)
T ss_pred chhhHHHHHHHHHhhHHHHHHHHHHHHHHH---------HHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHhh
Confidence 333333334457799999999998887642 3444567788999998876654321 224566666666677
Q ss_pred CCHHHHHHHHhcCCCC-----------------------ChhHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHHHHH
Q 038200 167 GDMSAAHELFDIMPER-----------------------NVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMA 223 (523)
Q Consensus 167 ~~~~~a~~~~~~~~~~-----------------------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~ 223 (523)
+|.+.|++.|++...+ |...|.-.....-..|+.+.|+.+|....+ |.
T Consensus 872 ~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~f 942 (1416)
T KOG3617|consen 872 RDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---------YF 942 (1416)
T ss_pred ccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh---------hh
Confidence 8888888888877532 223333333334445555555555544332 33
Q ss_pred HHHHHHhccccHHHHHHHHHHHHHcCCCCchHHHHHHhhhhhhcCChHHHHHHHHhc
Q 038200 224 SVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSM 280 (523)
Q Consensus 224 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 280 (523)
.+++..|-.|+.++|.++-++ . -|......|...|...|++.+|..+|.+.
T Consensus 943 s~VrI~C~qGk~~kAa~iA~e---s---gd~AAcYhlaR~YEn~g~v~~Av~FfTrA 993 (1416)
T KOG3617|consen 943 SMVRIKCIQGKTDKAARIAEE---S---GDKAACYHLARMYENDGDVVKAVKFFTRA 993 (1416)
T ss_pred hheeeEeeccCchHHHHHHHh---c---ccHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 445555556666666555432 1 24455555666666667777776666654
No 90
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.97 E-value=7.8e-07 Score=88.43 Aligned_cols=443 Identities=10% Similarity=0.007 Sum_probs=273.4
Q ss_pred HhHHHHHHHHhCCCCCChhHHHHHHHHhhccCCchhHHHHhccCC---CCCcccHHHHHHHHHhCCCchHHHHHHHHHHH
Q 038200 4 LLQIQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCIN---NPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIK 80 (523)
Q Consensus 4 ~~~i~~~~~~~g~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~ 80 (523)
...+|..+....++|.-...++.|...|....+...|.+.|++.- ..+..++......|++..+++.|..+.-..-+
T Consensus 475 ~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~q 554 (1238)
T KOG1127|consen 475 ALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQ 554 (1238)
T ss_pred HHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhh
Confidence 346677777777775667789999999998889999999998754 46777888999999999999999998433322
Q ss_pred CC-CCCCcccHHHHHHHHHccCCchHHHHHHHHHHHhCCCCCchHHHHHHHHHHccCChHHHHHHHhhcCCCCcchH-H-
Q 038200 81 NG-FMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISW-N- 157 (523)
Q Consensus 81 ~~-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~- 157 (523)
.. ...-...|....-.+...++..++..-|+...+..+. |...|..+..+|.++|.+..|.++|.+...-++..+ .
T Consensus 555 ka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPk-D~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~ 633 (1238)
T KOG1127|consen 555 KAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPK-DYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGR 633 (1238)
T ss_pred hchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCch-hHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHH
Confidence 21 0001112333334456778889999999999888766 888999999999999999999999988764333222 1
Q ss_pred -HHHHHHHhcCCHHHHHHHHhcCCC----------CChhHHHHHHHHHHhcCCchHHHHHHHHH-------HHCCCCCCH
Q 038200 158 -SIVSGHVRSGDMSAAHELFDIMPE----------RNVVSWNIMISGYSKSGNPGCSLKLFREM-------MKSGFRGND 219 (523)
Q Consensus 158 -~ll~~~~~~~~~~~a~~~~~~~~~----------~~~~~~~~li~~~~~~~~~~~a~~~~~~m-------~~~~~~p~~ 219 (523)
-..-..+..|.+.+|...+..+.. .-..++-.+...+...|-..+|.++++.- .......+.
T Consensus 634 fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~ 713 (1238)
T KOG1127|consen 634 FKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDR 713 (1238)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhH
Confidence 222334567888888888877653 11122222222222233223333332222 111111111
Q ss_pred HHHHHHHHH-----------------------HhccccH---H---HHHHHHHHHHHcCCCCchHHHHHHhhhhhh----
Q 038200 220 KTMASVLTA-----------------------CGRSARF---N---EGRSVHGYTVRTSLKPNIILDTALIDLYSK---- 266 (523)
Q Consensus 220 ~~~~~ll~~-----------------------~~~~~~~---~---~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---- 266 (523)
..|-.+..+ ....+.. + -+.+.+-.-.+ ...+...|..|+..|.+
T Consensus 714 ~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hls--l~~~~~~WyNLGinylr~f~~ 791 (1238)
T KOG1127|consen 714 LQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLS--LAIHMYPWYNLGINYLRYFLL 791 (1238)
T ss_pred HHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHH--HhhccchHHHHhHHHHHHHHH
Confidence 112111111 1111111 1 00011110011 11112233333332222
Q ss_pred cC----ChHHHHHHHHhcCC---CChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcCCCHHHHHHHHHHHhhcC
Q 038200 267 CQ----KVEVAQRVFDSMAD---RNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAE 339 (523)
Q Consensus 267 ~~----~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~ll~~~~~~~ 339 (523)
++ +...|+..+.+..+ .+..+|+.|.-. ...|++.-+...|-+-.... +.+..+|..+...|.+..
T Consensus 792 l~et~~~~~~Ai~c~KkaV~L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~se------p~~~~~W~NlgvL~l~n~ 864 (1238)
T KOG1127|consen 792 LGETMKDACTAIRCCKKAVSLCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSE------PTCHCQWLNLGVLVLENQ 864 (1238)
T ss_pred cCCcchhHHHHHHHHHHHHHHhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhcc------ccchhheeccceeEEecc
Confidence 11 23456666666543 567788877665 56678888877777666643 445678888888889999
Q ss_pred cHHHHHHHHHHhhHhcCCCCChHHHHHHHHHHHcCCChHHHHHHHHh--CCCCCCCCCchHHHHHHHHHHHHhcCCHHHH
Q 038200 340 LLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRK--MPEDNDNMSFESIMWVSLLSLCRFQGAVAMV 417 (523)
Q Consensus 340 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 417 (523)
+++.|...|...+. -.+.+...|-.........|+.-++..+|.. ....+.|-.++..-|.+........|+.++-
T Consensus 865 d~E~A~~af~~~qS--LdP~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~ 942 (1238)
T KOG1127|consen 865 DFEHAEPAFSSVQS--LDPLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEES 942 (1238)
T ss_pred cHHHhhHHHHhhhh--cCchhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHH
Confidence 99999999999886 3344566676666666678888888888876 3333445566666666555556666665554
Q ss_pred HHH----------HHHHhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHH
Q 038200 418 ERL----------AKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELM 458 (523)
Q Consensus 418 ~~~----------~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 458 (523)
... +++...-.|++..+|...+....+.+.+.+|..+..+.
T Consensus 943 I~t~~ki~sAs~al~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~Rl 993 (1238)
T KOG1127|consen 943 INTARKISSASLALSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRL 993 (1238)
T ss_pred HHHhhhhhhhHHHHHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 443 34444567888889999999999999998888777665
No 91
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.96 E-value=2.6e-06 Score=82.03 Aligned_cols=262 Identities=15% Similarity=0.155 Sum_probs=154.4
Q ss_pred HHHhcCCHHHHHHHHhcCCCCChh--HHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHH
Q 038200 162 GHVRSGDMSAAHELFDIMPERNVV--SWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGR 239 (523)
Q Consensus 162 ~~~~~~~~~~a~~~~~~~~~~~~~--~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~ 239 (523)
+-.....+.+|+.+++.+....+. -|..+...|+..|+++.|.++|.+. ..++-.+..|.+.|+|+.|.
T Consensus 741 aai~akew~kai~ildniqdqk~~s~yy~~iadhyan~~dfe~ae~lf~e~---------~~~~dai~my~k~~kw~da~ 811 (1636)
T KOG3616|consen 741 AAIGAKEWKKAISILDNIQDQKTASGYYGEIADHYANKGDFEIAEELFTEA---------DLFKDAIDMYGKAGKWEDAF 811 (1636)
T ss_pred HHhhhhhhhhhHhHHHHhhhhccccccchHHHHHhccchhHHHHHHHHHhc---------chhHHHHHHHhccccHHHHH
Confidence 344556677777777766654332 3566667777777777777777542 12344566777777777777
Q ss_pred HHHHHHHHcCCCCchHHHHHHhhhhhhcCChHHHHHHHHhcCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC
Q 038200 240 SVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGG 319 (523)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~ 319 (523)
++-.+.. |.......|-+-..-+-+.|++.+|.++|-.+..|+.. |..|-+.|..+..+++..+-....
T Consensus 812 kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti~~p~~a-----iqmydk~~~~ddmirlv~k~h~d~---- 880 (1636)
T KOG3616|consen 812 KLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITIGEPDKA-----IQMYDKHGLDDDMIRLVEKHHGDH---- 880 (1636)
T ss_pred HHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEccCchHH-----HHHHHhhCcchHHHHHHHHhChhh----
Confidence 6654432 33344556666666666777777777777777776643 566777777777777766432211
Q ss_pred CcCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhHhcCCCCChHHHHHHHHHHHcCCChHHHHHHHHhCCCCCCCCCch-H
Q 038200 320 SISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFE-S 398 (523)
Q Consensus 320 ~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~ 398 (523)
-..|-..+..-+...|+...|...|-+..+ |.+-+++|..++.+++|.++-+.-- +.+.... .
T Consensus 881 ----l~dt~~~f~~e~e~~g~lkaae~~flea~d----------~kaavnmyk~s~lw~dayriakteg--g~n~~k~v~ 944 (1636)
T KOG3616|consen 881 ----LHDTHKHFAKELEAEGDLKAAEEHFLEAGD----------FKAAVNMYKASELWEDAYRIAKTEG--GANAEKHVA 944 (1636)
T ss_pred ----hhHHHHHHHHHHHhccChhHHHHHHHhhhh----------HHHHHHHhhhhhhHHHHHHHHhccc--cccHHHHHH
Confidence 123555566667777888888777665543 4556667777777777766654322 1000000 0
Q ss_pred HHH-------------------HHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHH
Q 038200 399 IMW-------------------VSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMK 459 (523)
Q Consensus 399 ~~~-------------------~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 459 (523)
..| ..-+...+..+.++-|..+.+...+-. -+.++..++..+...|++++|-+-+-+..
T Consensus 945 flwaksiggdaavkllnk~gll~~~id~a~d~~afd~afdlari~~k~k--~~~vhlk~a~~ledegk~edaskhyveai 1022 (1636)
T KOG3616|consen 945 FLWAKSIGGDAAVKLLNKHGLLEAAIDFAADNCAFDFAFDLARIAAKDK--MGEVHLKLAMFLEDEGKFEDASKHYVEAI 1022 (1636)
T ss_pred HHHHHhhCcHHHHHHHHhhhhHHHHhhhhhcccchhhHHHHHHHhhhcc--CccchhHHhhhhhhccchhhhhHhhHHHh
Confidence 111 111112233344555555544443322 34567778888888999999877666555
Q ss_pred hC
Q 038200 460 KR 461 (523)
Q Consensus 460 ~~ 461 (523)
+.
T Consensus 1023 kl 1024 (1636)
T KOG3616|consen 1023 KL 1024 (1636)
T ss_pred hc
Confidence 44
No 92
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.95 E-value=1.1e-06 Score=77.39 Aligned_cols=383 Identities=9% Similarity=0.018 Sum_probs=246.7
Q ss_pred HHHHHhCCCchHHHHHHHHHHHCCCCCCcccHHHHHHHHHccCCchHHHHHHHHHHHhCCCCCchHHHHHHHHHHccCCh
Q 038200 59 IKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAM 138 (523)
Q Consensus 59 l~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 138 (523)
+.-+...+++..|+.+++.-...+-.-...+-.-+..++...|++++|...+..+.... .++...+-.|..++.-.|.+
T Consensus 29 Ledfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~Y 107 (557)
T KOG3785|consen 29 LEDFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQY 107 (557)
T ss_pred HHHHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHHH
Confidence 77788899999999999887754422222333344555579999999999999988754 56777777788888888999
Q ss_pred HHHHHHHhhcCCCCcchHHHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCC
Q 038200 139 DCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGN 218 (523)
Q Consensus 139 ~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~ 218 (523)
.+|..+-.+..+ ++..-..+.+.-.+.++-++-..+-+.+.. ...---+|.+.....-++++|+++|.+.... .|+
T Consensus 108 ~eA~~~~~ka~k-~pL~~RLlfhlahklndEk~~~~fh~~LqD-~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~d--n~e 183 (557)
T KOG3785|consen 108 IEAKSIAEKAPK-TPLCIRLLFHLAHKLNDEKRILTFHSSLQD-TLEDQLSLASVHYMRMHYQEAIDVYKRVLQD--NPE 183 (557)
T ss_pred HHHHHHHhhCCC-ChHHHHHHHHHHHHhCcHHHHHHHHHHHhh-hHHHHHhHHHHHHHHHHHHHHHHHHHHHHhc--Chh
Confidence 999988776542 222333444445566776666655555543 2233334555555556799999999999875 355
Q ss_pred HHHHHH-HHHHHhccccHHHHHHHHHHHHHcCCCCchHHHHHHhhhhhhc--CChHH--HHHHHHhcC----------C-
Q 038200 219 DKTMAS-VLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKC--QKVEV--AQRVFDSMA----------D- 282 (523)
Q Consensus 219 ~~~~~~-ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~--a~~~~~~~~----------~- 282 (523)
-...+. +.-+|.+..-++-+.+++.-..+. ++.++..-|.......+. |+..+ -.++-+... +
T Consensus 184 y~alNVy~ALCyyKlDYydvsqevl~vYL~q-~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rH 262 (557)
T KOG3785|consen 184 YIALNVYMALCYYKLDYYDVSQEVLKVYLRQ-FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRH 262 (557)
T ss_pred hhhhHHHHHHHHHhcchhhhHHHHHHHHHHh-CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHc
Confidence 555543 344667888888888888877665 233344444333333222 22111 111111111 0
Q ss_pred ---------------C-----ChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcCCCHHHHHHHHHHH-h----h
Q 038200 283 ---------------R-----NLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICAC-V----R 337 (523)
Q Consensus 283 ---------------~-----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~ll~~~-~----~ 337 (523)
| =+.....++--|.+.+++.+|..+.+++.- ..|-......+..+- . .
T Consensus 263 NLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl~P-------ttP~EyilKgvv~aalGQe~gS 335 (557)
T KOG3785|consen 263 NLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKDLDP-------TTPYEYILKGVVFAALGQETGS 335 (557)
T ss_pred CeEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhhcCC-------CChHHHHHHHHHHHHhhhhcCc
Confidence 1 122344566678899999999998887543 345554444444322 1 1
Q ss_pred cCcHHHHHHHHHHhhHhcCCCCC-hHHHHHHHHHHHcCCChHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHhcCCHHH
Q 038200 338 AELLTEGRKYFRQMIDFYKIKPN-FAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAM 416 (523)
Q Consensus 338 ~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 416 (523)
.....-|.+.|+..-+. +...| ..-..++...+.-..++++.+..++.+..- +..|......+..+....|++.+
T Consensus 336 reHlKiAqqffqlVG~S-a~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sY---F~NdD~Fn~N~AQAk~atgny~e 411 (557)
T KOG3785|consen 336 REHLKIAQQFFQLVGES-ALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESY---FTNDDDFNLNLAQAKLATGNYVE 411 (557)
T ss_pred HHHHHHHHHHHHHhccc-ccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHH---hcCcchhhhHHHHHHHHhcChHH
Confidence 22355677777766543 33333 233445666667777899999999888743 45555566678889999999999
Q ss_pred HHHHHHHHhhcCCCChhhHH-HHHHHHHhcCChhHHHHHHHHH
Q 038200 417 VERLAKSFVDMDPQDFSRYQ-FLLNVYAVAGQWEDVARVRELM 458 (523)
Q Consensus 417 a~~~~~~~~~~~p~~~~~~~-~l~~~~~~~g~~~~A~~~~~~m 458 (523)
|+++|-++...+-.+..+|. .|+++|.+.++.+-|++++-++
T Consensus 412 aEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk~ 454 (557)
T KOG3785|consen 412 AEELFIRISGPEIKNKILYKSMLARCYIRNKKPQLAWDMMLKT 454 (557)
T ss_pred HHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHHHHHHHhc
Confidence 99999988876644444554 6788999999999998876654
No 93
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.95 E-value=2e-06 Score=81.86 Aligned_cols=262 Identities=8% Similarity=-0.061 Sum_probs=144.9
Q ss_pred HHHHhcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHH----hccccHHHHHHHHHHHHHcCCCC-chHHHHHHhhhhhh
Q 038200 192 SGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTAC----GRSARFNEGRSVHGYTVRTSLKP-NIILDTALIDLYSK 266 (523)
Q Consensus 192 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~----~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~ 266 (523)
..+...|++++|.+.+++..+.. +.+...+.. ...+ ...+....+.+.+.. .....| .......+...+..
T Consensus 51 ~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~a~~~~~ 126 (355)
T cd05804 51 LSAWIAGDLPKALALLEQLLDDY-PRDLLALKL-HLGAFGLGDFSGMRDHVARVLPL--WAPENPDYWYLLGMLAFGLEE 126 (355)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHH-hHHHHHhcccccCchhHHHHHhc--cCcCCCCcHHHHHHHHHHHHH
Confidence 34566777778877777776642 223333331 1122 223444444444433 111122 23444455667777
Q ss_pred cCChHHHHHHHHhcCC---CChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcCCCH--HHHHHHHHHHhhcCcH
Q 038200 267 CQKVEVAQRVFDSMAD---RNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDE--ITFIGVICACVRAELL 341 (523)
Q Consensus 267 ~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~p~~--~~~~~ll~~~~~~~~~ 341 (523)
.|++++|...+++..+ .+...+..+...+...|++++|...+++...... ..|+. ..|..+...+...|++
T Consensus 127 ~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~----~~~~~~~~~~~~la~~~~~~G~~ 202 (355)
T cd05804 127 AGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWD----CSSMLRGHNWWHLALFYLERGDY 202 (355)
T ss_pred cCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccC----CCcchhHHHHHHHHHHHHHCCCH
Confidence 8888888888877654 3455667777778888888888888887776430 01222 2344666777888888
Q ss_pred HHHHHHHHHhhHhcCCCCChHHH-H--HHHHHHHcCCChHHHHHH--H-HhCCCCCCCCCchHHHHHHHHHHHHhcCCHH
Q 038200 342 TEGRKYFRQMIDFYKIKPNFAHY-W--CMANLYAGAELTEEAEEI--L-RKMPEDNDNMSFESIMWVSLLSLCRFQGAVA 415 (523)
Q Consensus 342 ~~a~~~~~~~~~~~~~~~~~~~~-~--~l~~~~~~~g~~~~A~~~--~-~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 415 (523)
++|..+++++.......+..... . .++..+...|....+.++ + ........+ ............++...|+.+
T Consensus 203 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~ 281 (355)
T cd05804 203 EAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPD-HGLAFNDLHAALALAGAGDKD 281 (355)
T ss_pred HHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCc-ccchHHHHHHHHHHhcCCCHH
Confidence 88888888875421111222111 1 223333334433322222 1 111100000 111122224555677888888
Q ss_pred HHHHHHHHHhhcC-C--------CChhhHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 038200 416 MVERLAKSFVDMD-P--------QDFSRYQFLLNVYAVAGQWEDVARVRELMKKRR 462 (523)
Q Consensus 416 ~a~~~~~~~~~~~-p--------~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 462 (523)
.|...++.+.... . .........+.++...|++++|.+.+.+.....
T Consensus 282 ~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~a 337 (355)
T cd05804 282 ALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDDL 337 (355)
T ss_pred HHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 8888888876522 1 134455566777889999999999988876543
No 94
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.95 E-value=2.7e-08 Score=92.95 Aligned_cols=226 Identities=9% Similarity=0.001 Sum_probs=174.4
Q ss_pred HhccccHHHHHHHHHHHHHcCCCCchHHHHHHhhhhhhcCChHHHHHHHHhcCC---CChHHHHHHHHHHHhcCChHHHH
Q 038200 229 CGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMAD---RNLVCWNAMILGHCIHGKPEEGI 305 (523)
Q Consensus 229 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~ 305 (523)
+.+.|++.+|.-.|+..++.. |-+...|..|.......++-..|+..+++..+ .|....-.|.-.|...|.-..|+
T Consensus 295 lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al 373 (579)
T KOG1125|consen 295 LMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQAL 373 (579)
T ss_pred HHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHH
Confidence 467888999999999988876 34788899898888888888888888888765 35677778888899999999999
Q ss_pred HHHHHHHhCCCCCCCcCC---CHHHHHHHHHHHhhcCcHHHHHHHHHHhhHhcCCCCChHHHHHHHHHHHcCCChHHHHH
Q 038200 306 KLFTALVNGTVAGGSISP---DEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEE 382 (523)
Q Consensus 306 ~~~~~m~~~~~~~~~~~p---~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 382 (523)
..|+.-+.......-..+ +...-.. ..+.....+....++|-.+....+..+|+.++..|.-.|.-.|.+++|..
T Consensus 374 ~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiD 451 (579)
T KOG1125|consen 374 KMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVD 451 (579)
T ss_pred HHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHH
Confidence 999887664310000000 0000000 12222333445556666665544666889999999999999999999999
Q ss_pred HHHhCCCCCCCCCc-hHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 038200 383 ILRKMPEDNDNMSF-ESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKR 461 (523)
Q Consensus 383 ~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 461 (523)
.|+.++. ..| |..+|+.|...++...+.++|...|++++++.|.-..+...|+..|...|.|+||.+.|-+....
T Consensus 452 cf~~AL~----v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~m 527 (579)
T KOG1125|consen 452 CFEAALQ----VKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSM 527 (579)
T ss_pred HHHHHHh----cCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHh
Confidence 9999985 455 68899999999999999999999999999999999999999999999999999999988776543
No 95
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.93 E-value=4.9e-05 Score=71.12 Aligned_cols=428 Identities=11% Similarity=0.081 Sum_probs=264.7
Q ss_pred CCChhHHHHHHHHhhccCCchhHHHHhccCCC--C-CcccHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCcccHHHHH
Q 038200 18 FNNSFWTINLLKHSADFGSPDYTVLVFKCINN--P-GTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLF 94 (523)
Q Consensus 18 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll 94 (523)
|.|..+|..|++-+..+ .+++++.+++.+.. | ....|..-|..-.++++++....+|.+.+..- .+...|...+
T Consensus 17 P~di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkv--LnlDLW~lYl 93 (656)
T KOG1914|consen 17 PYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKV--LNLDLWKLYL 93 (656)
T ss_pred CccHHHHHHHHHHHccC-CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH--hhHhHHHHHH
Confidence 68899999999888776 89999999998863 3 45679999999999999999999999998763 4556676666
Q ss_pred HHHHcc-CCch----HHHHHHHHHHH-hCCCC-CchHHHHHHHHH---------HccCChHHHHHHHhhcCC-C------
Q 038200 95 GSCAKT-GCVE----RGGMCHGLALK-NGVDF-ELPVMNSLINMY---------GCFGAMDCARNMFVQMSP-R------ 151 (523)
Q Consensus 95 ~~~~~~-~~~~----~a~~~~~~~~~-~~~~~-~~~~~~~l~~~~---------~~~g~~~~A~~~~~~~~~-~------ 151 (523)
...-+. |+.. ...+.|+..+. .|..+ +-.+|+..+..+ ....+++..+++++++.. |
T Consensus 94 ~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~nlEk 173 (656)
T KOG1914|consen 94 SYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMHNLEK 173 (656)
T ss_pred HHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCccccHHH
Confidence 655432 3332 23344554443 44433 344566666543 334467788888888863 2
Q ss_pred ---CcchHHHHHHHH-------HhcCCHHHHHHHHhcCCC---------CC------------hhHHHHHHHHHHhcCCc
Q 038200 152 ---DLISWNSIVSGH-------VRSGDMSAAHELFDIMPE---------RN------------VVSWNIMISGYSKSGNP 200 (523)
Q Consensus 152 ---~~~~~~~ll~~~-------~~~~~~~~a~~~~~~~~~---------~~------------~~~~~~li~~~~~~~~~ 200 (523)
|-..|..=|+.. -+...+-.|.++++++.. |. +..|-.+|.--...+--
T Consensus 174 LW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wEksNpL~ 253 (656)
T KOG1914|consen 174 LWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWEKSNPLR 253 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHHhcCCcc
Confidence 112222222211 123445566666665531 10 12244444321111100
Q ss_pred --------hHHHHHHHHH-HHCCCCCCHHHH-HH----HHHHHhcccc-------HHHHHHHHHHHHHcCCCCchHHHHH
Q 038200 201 --------GCSLKLFREM-MKSGFRGNDKTM-AS----VLTACGRSAR-------FNEGRSVHGYTVRTSLKPNIILDTA 259 (523)
Q Consensus 201 --------~~a~~~~~~m-~~~~~~p~~~~~-~~----ll~~~~~~~~-------~~~a~~~~~~~~~~~~~~~~~~~~~ 259 (523)
....-.+++. .-.+..|+.... .. ..+.+...|+ .+++..+++.....-..-+..+|..
T Consensus 254 t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly~~ 333 (656)
T KOG1914|consen 254 TLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLLYFA 333 (656)
T ss_pred cccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0111122222 222333333211 11 1112222333 4455666666554433334445544
Q ss_pred Hhhhhhhc---CChHHHHHHHHhcCC----CChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcCC-CHHHHHHH
Q 038200 260 LIDLYSKC---QKVEVAQRVFDSMAD----RNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISP-DEITFIGV 331 (523)
Q Consensus 260 l~~~~~~~---~~~~~a~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~p-~~~~~~~l 331 (523)
+.+.-... +..+....++++... .-..+|..+|..-.+..-...|..+|.++.+.+ ..+ +....+++
T Consensus 334 ~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~-----r~~hhVfVa~A~ 408 (656)
T KOG1914|consen 334 LADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDK-----RTRHHVFVAAAL 408 (656)
T ss_pred HHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhcc-----CCcchhhHHHHH
Confidence 44322111 125555666666543 234578888888888899999999999999988 566 67778888
Q ss_pred HHHHhhcCcHHHHHHHHHHhhHhcCCCCChHHHHHHHHHHHcCCChHHHHHHHHhCCCCCCCCCch--HHHHHHHHHHHH
Q 038200 332 ICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFE--SIMWVSLLSLCR 409 (523)
Q Consensus 332 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~--~~~~~~l~~~~~ 409 (523)
+.-+|. ++.+.|.++|+.-.+.+| .++..-...++-+...++-..|..+|++.... ++.|+ ..+|..++..-.
T Consensus 409 mEy~cs-kD~~~AfrIFeLGLkkf~--d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s--~l~~~ks~~Iw~r~l~yES 483 (656)
T KOG1914|consen 409 MEYYCS-KDKETAFRIFELGLKKFG--DSPEYVLKYLDFLSHLNDDNNARALFERVLTS--VLSADKSKEIWDRMLEYES 483 (656)
T ss_pred HHHHhc-CChhHHHHHHHHHHHhcC--CChHHHHHHHHHHHHhCcchhHHHHHHHHHhc--cCChhhhHHHHHHHHHHHH
Confidence 877764 889999999999888544 34455567788888999999999999999954 45554 579999999999
Q ss_pred hcCCHHHHHHHHHHHhhcCCCC----hhhHHHHHHHHHhcCChhHHHHHHHHH
Q 038200 410 FQGAVAMVERLAKSFVDMDPQD----FSRYQFLLNVYAVAGQWEDVARVRELM 458 (523)
Q Consensus 410 ~~g~~~~a~~~~~~~~~~~p~~----~~~~~~l~~~~~~~g~~~~A~~~~~~m 458 (523)
..|+...+..+-++....-|.+ ...-..++.-|.-.+.+..-..-++.|
T Consensus 484 ~vGdL~si~~lekR~~~af~~~qe~~~~~~~~~v~RY~~~d~~~c~~~elk~l 536 (656)
T KOG1914|consen 484 NVGDLNSILKLEKRRFTAFPADQEYEGNETALFVDRYGILDLYPCSLDELKFL 536 (656)
T ss_pred hcccHHHHHHHHHHHHHhcchhhcCCCChHHHHHHHHhhcccccccHHHHHhh
Confidence 9999999999988887655521 123445566677677665544444433
No 96
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.93 E-value=1.3e-06 Score=83.26 Aligned_cols=191 Identities=8% Similarity=-0.029 Sum_probs=117.0
Q ss_pred CCChhHHHHHHHHhhccCCchhHHHHhccCC---CCCccc---HHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCcccHH
Q 038200 18 FNNSFWTINLLKHSADFGSPDYTVLVFKCIN---NPGTFC---VNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFV 91 (523)
Q Consensus 18 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~---~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~ 91 (523)
|..+..+..+...+...|+.+.+.+.+.... +++... .......+...|++++|.+.+++..+.. +.|...+.
T Consensus 3 p~~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~ 81 (355)
T cd05804 3 PDFALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY-PRDLLALK 81 (355)
T ss_pred CccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHH
Confidence 5667777777777777788888766665532 222222 1222334566788889998888887752 33333333
Q ss_pred HHHHHHH----ccCCchHHHHHHHHHHHhCCCCC-chHHHHHHHHHHccCChHHHHHHHhhcC---CCCcchHHHHHHHH
Q 038200 92 SLFGSCA----KTGCVERGGMCHGLALKNGVDFE-LPVMNSLINMYGCFGAMDCARNMFVQMS---PRDLISWNSIVSGH 163 (523)
Q Consensus 92 ~ll~~~~----~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~ll~~~ 163 (523)
. ...+. ..+....+.+.++. .....|+ ......+..++...|++++|.+.+++.. +.+...+..+...+
T Consensus 82 ~-~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~ 158 (355)
T cd05804 82 L-HLGAFGLGDFSGMRDHVARVLPL--WAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVL 158 (355)
T ss_pred H-hHHHHHhcccccCchhHHHHHhc--cCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHH
Confidence 2 11222 23444455554443 1112222 2334455567778888888888888876 33455667777778
Q ss_pred HhcCCHHHHHHHHhcCCC--C---Ch--hHHHHHHHHHHhcCCchHHHHHHHHHHH
Q 038200 164 VRSGDMSAAHELFDIMPE--R---NV--VSWNIMISGYSKSGNPGCSLKLFREMMK 212 (523)
Q Consensus 164 ~~~~~~~~a~~~~~~~~~--~---~~--~~~~~li~~~~~~~~~~~a~~~~~~m~~ 212 (523)
...|++++|...+++... | +. ..|..+...+...|++++|..+|++...
T Consensus 159 ~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~ 214 (355)
T cd05804 159 EMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIA 214 (355)
T ss_pred HHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 888888888888877654 1 21 2344667777888888888888887754
No 97
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.91 E-value=2.5e-06 Score=82.21 Aligned_cols=220 Identities=13% Similarity=0.054 Sum_probs=114.8
Q ss_pred HHHhcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHcCCCCchHHHHHHhhhhhhcCChHH
Q 038200 193 GYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEV 272 (523)
Q Consensus 193 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 272 (523)
+......|.+|+.+++.++.+.. -.--|..+...|+..|+++.|.++|-+. ..++-.|.+|.+.|+++.
T Consensus 741 aai~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~ae~lf~e~---------~~~~dai~my~k~~kw~d 809 (1636)
T KOG3616|consen 741 AAIGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEIAEELFTEA---------DLFKDAIDMYGKAGKWED 809 (1636)
T ss_pred HHhhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHHHHHHHHhc---------chhHHHHHHHhccccHHH
Confidence 34445556666666665555421 2234555566666666666666665322 123445566666666666
Q ss_pred HHHHHHhcCCCC--hHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcCCCHHHHHHHHHHHhhcCcHHHHHHHHHH
Q 038200 273 AQRVFDSMADRN--LVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQ 350 (523)
Q Consensus 273 a~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 350 (523)
|.++-.+...|. ...|-+-..-+-.+|++.+|.++|-... .|+. .|..|-+.|..+..+++.++
T Consensus 810 a~kla~e~~~~e~t~~~yiakaedldehgkf~eaeqlyiti~---------~p~~-----aiqmydk~~~~ddmirlv~k 875 (1636)
T KOG3616|consen 810 AFKLAEECHGPEATISLYIAKAEDLDEHGKFAEAEQLYITIG---------EPDK-----AIQMYDKHGLDDDMIRLVEK 875 (1636)
T ss_pred HHHHHHHhcCchhHHHHHHHhHHhHHhhcchhhhhheeEEcc---------CchH-----HHHHHHhhCcchHHHHHHHH
Confidence 666666654442 2344444444556666666666654321 2442 34556666666666655554
Q ss_pred hhHhcCCCCChHHHHHHHHHHHcCCChHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCC
Q 038200 351 MIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQ 430 (523)
Q Consensus 351 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 430 (523)
-... .-..|...+..-|-..|++..|.+.|-+.. -|...++.|...+-++.|-++.+. -+-.
T Consensus 876 ~h~d----~l~dt~~~f~~e~e~~g~lkaae~~flea~-----------d~kaavnmyk~s~lw~dayriakt---egg~ 937 (1636)
T KOG3616|consen 876 HHGD----HLHDTHKHFAKELEAEGDLKAAEEHFLEAG-----------DFKAAVNMYKASELWEDAYRIAKT---EGGA 937 (1636)
T ss_pred hChh----hhhHHHHHHHHHHHhccChhHHHHHHHhhh-----------hHHHHHHHhhhhhhHHHHHHHHhc---cccc
Confidence 4321 112344455666666777777776665555 234445556666666665555332 2222
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHH
Q 038200 431 DFSRYQFLLNVYAVAGQWEDVARVREL 457 (523)
Q Consensus 431 ~~~~~~~l~~~~~~~g~~~~A~~~~~~ 457 (523)
+..-....++ ++.=--+.|.+++.+
T Consensus 938 n~~k~v~flw--aksiggdaavkllnk 962 (1636)
T KOG3616|consen 938 NAEKHVAFLW--AKSIGGDAAVKLLNK 962 (1636)
T ss_pred cHHHHHHHHH--HHhhCcHHHHHHHHh
Confidence 3333333333 333233456666654
No 98
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.91 E-value=5e-05 Score=76.13 Aligned_cols=261 Identities=15% Similarity=0.143 Sum_probs=145.0
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccc
Q 038200 154 ISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSA 233 (523)
Q Consensus 154 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~ 233 (523)
..|..+..+-.+.|.+.+|++-|-+.. |+..|..++....+.|.|++-.+++....+..-.|... +.++-+|++.+
T Consensus 1105 ~vWsqlakAQL~~~~v~dAieSyikad--Dps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~AyAkt~ 1180 (1666)
T KOG0985|consen 1105 AVWSQLAKAQLQGGLVKDAIESYIKAD--DPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFAYAKTN 1180 (1666)
T ss_pred HHHHHHHHHHHhcCchHHHHHHHHhcC--CcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHHHHHhc
Confidence 345555555555555555555554433 33445555556666666666555555444443333332 34445555555
Q ss_pred cHHHHHHHHHHHHHcCCCCchHHHHHHhhhhhhcCChHHHHHHHHhcCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 038200 234 RFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVN 313 (523)
Q Consensus 234 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 313 (523)
++.+.++++ ..|+..-...+.+-|...+.++.|.-+|. ++..|..|...+...|++..|.+.-++.
T Consensus 1181 rl~elE~fi-------~gpN~A~i~~vGdrcf~~~~y~aAkl~y~-----~vSN~a~La~TLV~LgeyQ~AVD~aRKA-- 1246 (1666)
T KOG0985|consen 1181 RLTELEEFI-------AGPNVANIQQVGDRCFEEKMYEAAKLLYS-----NVSNFAKLASTLVYLGEYQGAVDAARKA-- 1246 (1666)
T ss_pred hHHHHHHHh-------cCCCchhHHHHhHHHhhhhhhHHHHHHHH-----HhhhHHHHHHHHHHHHHHHHHHHHhhhc--
Confidence 555444433 23444444455555555555555555554 3445667777777777777777665532
Q ss_pred CCCCCCCcCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhHhcCCCCChHHHHHHHHHHHcCCChHHHHHHHHhCCCCCCC
Q 038200 314 GTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDN 393 (523)
Q Consensus 314 ~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 393 (523)
.+..||..+-.+|...+.+.-| +|-.. .+.....-..-|+.-|-..|-+++-+.+++...-
T Consensus 1247 ---------ns~ktWK~VcfaCvd~~EFrlA-----QiCGL-~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LG---- 1307 (1666)
T KOG0985|consen 1247 ---------NSTKTWKEVCFACVDKEEFRLA-----QICGL-NIIVHADELEELIEYYQDRGYFEELISLLEAGLG---- 1307 (1666)
T ss_pred ---------cchhHHHHHHHHHhchhhhhHH-----HhcCc-eEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhc----
Confidence 3455777777777776665443 22221 2333455667788888889999998888887762
Q ss_pred CC-chHHHHHHHHHHHHhcCCHHHHHHHHHHHhh-cC-C------CChhhHHHHHHHHHhcCChhHHH
Q 038200 394 MS-FESIMWVSLLSLCRFQGAVAMVERLAKSFVD-MD-P------QDFSRYQFLLNVYAVAGQWEDVA 452 (523)
Q Consensus 394 ~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~-p------~~~~~~~~l~~~~~~~g~~~~A~ 452 (523)
.+ .....|.-+.-.|++-. .++..+.++.+.. .+ | +....|..|.-.|.+-..|+.|.
T Consensus 1308 LERAHMgmfTELaiLYskyk-p~km~EHl~LFwsRvNipKviRA~eqahlW~ElvfLY~~y~eyDNAa 1374 (1666)
T KOG0985|consen 1308 LERAHMGMFTELAILYSKYK-PEKMMEHLKLFWSRVNIPKVIRAAEQAHLWSELVFLYDKYEEYDNAA 1374 (1666)
T ss_pred hhHHHHHHHHHHHHHHHhcC-HHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhhhhhhHHH
Confidence 33 33445555555555442 4444444443332 11 1 12345666777777666666554
No 99
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.90 E-value=7.5e-07 Score=76.53 Aligned_cols=284 Identities=10% Similarity=0.087 Sum_probs=157.0
Q ss_pred HHHHHHhcCCHHHHHHHHhcCCC--C-ChhHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHHHHHH-HHHHHhcccc
Q 038200 159 IVSGHVRSGDMSAAHELFDIMPE--R-NVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMAS-VLTACGRSAR 234 (523)
Q Consensus 159 ll~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~-ll~~~~~~~~ 234 (523)
.+..+.+..++++|++++..-.+ | +......|..+|....++..|-+.|+++... .|...-|.. -...+.+.+.
T Consensus 16 viy~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSLY~A~i 93 (459)
T KOG4340|consen 16 VVYRLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSLYKACI 93 (459)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHHHHhcc
Confidence 33334444555555555544433 1 3344555555666666666666666666553 343333321 2334445555
Q ss_pred HHHHHHHHHHHHHcCCCCchHH--HHHHhhhhhhcCChHHHHHHHHhcCC-CChHHHHHHHHHHHhcCChHHHHHHHHHH
Q 038200 235 FNEGRSVHGYTVRTSLKPNIIL--DTALIDLYSKCQKVEVAQRVFDSMAD-RNLVCWNAMILGHCIHGKPEEGIKLFTAL 311 (523)
Q Consensus 235 ~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~m 311 (523)
+..|..+...|... ++... ...-.......+++..+..++++... .+..+.+.......+.|+++.|++-|+..
T Consensus 94 ~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaA 170 (459)
T KOG4340|consen 94 YADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAA 170 (459)
T ss_pred cHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHHH
Confidence 66666665555432 11111 11011112334566666666666653 44444444445555666777777777666
Q ss_pred HhCCCCCCCcCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhHhcCCCC-------------Ch--------HHHHHHHH-
Q 038200 312 VNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKP-------------NF--------AHYWCMAN- 369 (523)
Q Consensus 312 ~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-------------~~--------~~~~~l~~- 369 (523)
.+.+ |..| ...|+..+.. .+.++++.|+++..++.++ |++. |+ -.-+.++.
T Consensus 171 lqvs----Gyqp-llAYniALaH-y~~~qyasALk~iSEIieR-G~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eA 243 (459)
T KOG4340|consen 171 LQVS----GYQP-LLAYNLALAH-YSSRQYASALKHISEIIER-GIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEA 243 (459)
T ss_pred Hhhc----CCCc-hhHHHHHHHH-HhhhhHHHHHHHHHHHHHh-hhhcCCccCccceeccCchhcccchHHHHHHHHHHH
Confidence 6544 1333 3345444433 3446666666666666654 4321 11 11223333
Q ss_pred ------HHHcCCChHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhhHHHHHHHHH
Q 038200 370 ------LYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYA 443 (523)
Q Consensus 370 ------~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 443 (523)
.+.+.|+++.|.+.+-.|.-+. ....|++|...+.-. -..+++-...+-+.-+.+++|-.+++|..++-.|+
T Consensus 244 fNLKaAIeyq~~n~eAA~eaLtDmPPRa-E~elDPvTLHN~Al~-n~~~~p~~g~~KLqFLL~~nPfP~ETFANlLllyC 321 (459)
T KOG4340|consen 244 FNLKAAIEYQLRNYEAAQEALTDMPPRA-EEELDPVTLHNQALM-NMDARPTEGFEKLQFLLQQNPFPPETFANLLLLYC 321 (459)
T ss_pred hhhhhhhhhhcccHHHHHHHhhcCCCcc-cccCCchhhhHHHHh-cccCCccccHHHHHHHHhcCCCChHHHHHHHHHHh
Confidence 3467889999999999988532 235566776655432 22345556666667777788877889999999999
Q ss_pred hcCChhHHHHHHH
Q 038200 444 VAGQWEDVARVRE 456 (523)
Q Consensus 444 ~~g~~~~A~~~~~ 456 (523)
+..-++-|.+++-
T Consensus 322 KNeyf~lAADvLA 334 (459)
T KOG4340|consen 322 KNEYFDLAADVLA 334 (459)
T ss_pred hhHHHhHHHHHHh
Confidence 9988888887755
No 100
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.87 E-value=2.7e-07 Score=78.60 Aligned_cols=149 Identities=8% Similarity=0.055 Sum_probs=114.7
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCCCcCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhHhcCCCCChHHHHHHHHHH
Q 038200 292 ILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLY 371 (523)
Q Consensus 292 i~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 371 (523)
+..|...|+++.+....+.+.. |. ..+...++.+++...++...+ .-+.+...|..|...|
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~---------~~--------~~~~~~~~~~~~i~~l~~~L~--~~P~~~~~w~~Lg~~~ 83 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLAD---------PL--------HQFASQQTPEAQLQALQDKIR--ANPQNSEQWALLGEYY 83 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhC---------cc--------ccccCchhHHHHHHHHHHHHH--HCCCCHHHHHHHHHHH
Confidence 3457788888776544433222 11 012235677788888888777 4566788999999999
Q ss_pred HcCCChHHHHHHHHhCCCCCCCCCc-hHHHHHHHHHH-HHhcCC--HHHHHHHHHHHhhcCCCChhhHHHHHHHHHhcCC
Q 038200 372 AGAELTEEAEEILRKMPEDNDNMSF-ESIMWVSLLSL-CRFQGA--VAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQ 447 (523)
Q Consensus 372 ~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~~~l~~~-~~~~g~--~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 447 (523)
...|++++|...+++.... .| +...+..+..+ +...|+ .++|.++++++.+.+|+++.++..++..+...|+
T Consensus 84 ~~~g~~~~A~~a~~~Al~l----~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~ 159 (198)
T PRK10370 84 LWRNDYDNALLAYRQALQL----RGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQAD 159 (198)
T ss_pred HHCCCHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCC
Confidence 9999999999999998863 44 56677777765 467677 5999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHhCCC
Q 038200 448 WEDVARVRELMKKRRM 463 (523)
Q Consensus 448 ~~~A~~~~~~m~~~~~ 463 (523)
+++|+..|+++.+...
T Consensus 160 ~~~Ai~~~~~aL~l~~ 175 (198)
T PRK10370 160 YAQAIELWQKVLDLNS 175 (198)
T ss_pred HHHHHHHHHHHHhhCC
Confidence 9999999999977643
No 101
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.86 E-value=5.9e-05 Score=70.62 Aligned_cols=398 Identities=12% Similarity=0.099 Sum_probs=247.3
Q ss_pred CCCcccHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCcccHHHHHHHHHccCCchHHHHHHHHHHHhCCCCCchHHHHH
Q 038200 49 NPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSL 128 (523)
Q Consensus 49 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 128 (523)
+-|+.+|+.||+-+..+ .++++.+.++++... ++-....|..-+..-.+..+++.+..+|.+.+..- .+.+.|...
T Consensus 17 P~di~sw~~lire~qt~-~~~~~R~~YEq~~~~-FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkv--LnlDLW~lY 92 (656)
T KOG1914|consen 17 PYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNV-FPSSPRAWKLYIERELASKDFESVEKLFSRCLVKV--LNLDLWKLY 92 (656)
T ss_pred CccHHHHHHHHHHHccC-CHHHHHHHHHHHhcc-CCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH--hhHhHHHHH
Confidence 45889999999987766 999999999999864 34456688889999999999999999999998764 356777776
Q ss_pred HHHHHc-cCChHHHHHHHhh----------cCCCCcchHHHHHHH---------HHhcCCHHHHHHHHhcCCC-C-----
Q 038200 129 INMYGC-FGAMDCARNMFVQ----------MSPRDLISWNSIVSG---------HVRSGDMSAAHELFDIMPE-R----- 182 (523)
Q Consensus 129 ~~~~~~-~g~~~~A~~~~~~----------~~~~~~~~~~~ll~~---------~~~~~~~~~a~~~~~~~~~-~----- 182 (523)
++--.+ .|+...+....-+ |...+...|+..+.. +....+++...+++.++.. |
T Consensus 93 l~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~nlE 172 (656)
T KOG1914|consen 93 LSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMHNLE 172 (656)
T ss_pred HHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCccccHH
Confidence 664332 3443332222111 122344556665554 4455678888888988864 2
Q ss_pred ----ChhHHHHHHHH-------HHhcCCchHHHHHHHHHHH--CCCCCCHH---------------HHHHHHHHHhcccc
Q 038200 183 ----NVVSWNIMISG-------YSKSGNPGCSLKLFREMMK--SGFRGNDK---------------TMASVLTACGRSAR 234 (523)
Q Consensus 183 ----~~~~~~~li~~-------~~~~~~~~~a~~~~~~m~~--~~~~p~~~---------------~~~~ll~~~~~~~~ 234 (523)
|-..|..=|+. --+...+..|.++++++.. .|..-+.. .|..+|.- -+.+.
T Consensus 173 kLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~w-EksNp 251 (656)
T KOG1914|consen 173 KLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKW-EKSNP 251 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHH-HhcCC
Confidence 22222222221 1133456677777777654 23211111 12222221 11111
Q ss_pred H---------HHHHHHHHHHH-HcCCCCchHHHH-----HHhhhhhhcCC-------hHHHHHHHHhcCC----CChHHH
Q 038200 235 F---------NEGRSVHGYTV-RTSLKPNIILDT-----ALIDLYSKCQK-------VEVAQRVFDSMAD----RNLVCW 288 (523)
Q Consensus 235 ~---------~~a~~~~~~~~-~~~~~~~~~~~~-----~l~~~~~~~~~-------~~~a~~~~~~~~~----~~~~~~ 288 (523)
+ ....-++++.. -.+..|++.... ...+.+...|+ -+++..++++... .+...|
T Consensus 252 L~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly 331 (656)
T KOG1914|consen 252 LRTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLLY 331 (656)
T ss_pred cccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 01111222222 123333321111 11122333333 3455555555433 233333
Q ss_pred HHHHHHHHh---cCChHHHHHHHHHHHhCCCCCCCcCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhHhcCCCC-ChHHH
Q 038200 289 NAMILGHCI---HGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKP-NFAHY 364 (523)
Q Consensus 289 ~~li~~~~~---~g~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~ 364 (523)
..+.+.--. ....+.....++++.... .+.|+ .+|..++....+..-+..|..+|.++.+. +..+ .+..+
T Consensus 332 ~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~----~~~~t-Lv~~~~mn~irR~eGlkaaR~iF~kaR~~-~r~~hhVfVa 405 (656)
T KOG1914|consen 332 FALADYEESRYDDNKEKKVHEIYNKLLKIE----DIDLT-LVYCQYMNFIRRAEGLKAARKIFKKARED-KRTRHHVFVA 405 (656)
T ss_pred HHHHhhHHHhcccchhhhhHHHHHHHHhhh----ccCCc-eehhHHHHHHHHhhhHHHHHHHHHHHhhc-cCCcchhhHH
Confidence 333322111 123566666777776643 13333 47888888888889999999999999997 6666 78888
Q ss_pred HHHHHHHHcCCChHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHhhc--CCC-ChhhHHHHHHH
Q 038200 365 WCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDM--DPQ-DFSRYQFLLNV 441 (523)
Q Consensus 365 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~p~-~~~~~~~l~~~ 441 (523)
.+++.-|| .++.+-|.++|+--+.. +..++.-....+..+...++-..+..+|++++.. .|+ ...+|..++.-
T Consensus 406 ~A~mEy~c-skD~~~AfrIFeLGLkk---f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~y 481 (656)
T KOG1914|consen 406 AALMEYYC-SKDKETAFRIFELGLKK---FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEY 481 (656)
T ss_pred HHHHHHHh-cCChhHHHHHHHHHHHh---cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHH
Confidence 88888776 47889999999987754 4444555567777888899999999999999975 443 55799999999
Q ss_pred HHhcCChhHHHHHHHHHHhC
Q 038200 442 YAVAGQWEDVARVRELMKKR 461 (523)
Q Consensus 442 ~~~~g~~~~A~~~~~~m~~~ 461 (523)
=..-|+...+.++-+++...
T Consensus 482 ES~vGdL~si~~lekR~~~a 501 (656)
T KOG1914|consen 482 ESNVGDLNSILKLEKRRFTA 501 (656)
T ss_pred HHhcccHHHHHHHHHHHHHh
Confidence 99999999999998888664
No 102
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.86 E-value=1.1e-05 Score=87.23 Aligned_cols=328 Identities=9% Similarity=-0.040 Sum_probs=212.6
Q ss_pred HHccCChHHHHHHHhhcCC----CCcchHHHHHHHHHhcCCHHHHHHHHhcCCC----C----C----hhHHHHHHHHHH
Q 038200 132 YGCFGAMDCARNMFVQMSP----RDLISWNSIVSGHVRSGDMSAAHELFDIMPE----R----N----VVSWNIMISGYS 195 (523)
Q Consensus 132 ~~~~g~~~~A~~~~~~~~~----~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~----~----~----~~~~~~li~~~~ 195 (523)
....|+++.+...++.+.. .+..........+...|+++++...+..... . + ......+...+.
T Consensus 384 l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 463 (903)
T PRK04841 384 LFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAI 463 (903)
T ss_pred HHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHH
Confidence 4456778887788777641 2333333444455678999998888876532 1 1 111223344567
Q ss_pred hcCCchHHHHHHHHHHHCCCCCCH----HHHHHHHHHHhccccHHHHHHHHHHHHHcCC---CC--chHHHHHHhhhhhh
Q 038200 196 KSGNPGCSLKLFREMMKSGFRGND----KTMASVLTACGRSARFNEGRSVHGYTVRTSL---KP--NIILDTALIDLYSK 266 (523)
Q Consensus 196 ~~~~~~~a~~~~~~m~~~~~~p~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~---~~--~~~~~~~l~~~~~~ 266 (523)
..|++++|...+++....-...+. ...+.+...+...|+++.|...+.+.....- .+ .......+...+..
T Consensus 464 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~ 543 (903)
T PRK04841 464 NDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFA 543 (903)
T ss_pred hCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHH
Confidence 899999999999988763111221 2345566667889999999999988775311 11 12345566778889
Q ss_pred cCChHHHHHHHHhcCC-------C----ChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcCC--CHHHHHHHHH
Q 038200 267 CQKVEVAQRVFDSMAD-------R----NLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISP--DEITFIGVIC 333 (523)
Q Consensus 267 ~~~~~~a~~~~~~~~~-------~----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~p--~~~~~~~ll~ 333 (523)
.|+++.|...+++... + ....+..+...+...|++++|...+.+....... ..+ ....+..+..
T Consensus 544 ~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~---~~~~~~~~~~~~la~ 620 (903)
T PRK04841 544 QGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSN---YQPQQQLQCLAMLAK 620 (903)
T ss_pred CCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhc---cCchHHHHHHHHHHH
Confidence 9999999998877532 1 1223445566677889999999999887664210 112 2334555666
Q ss_pred HHhhcCcHHHHHHHHHHhhHhcCCCCChHHH-----HHHHHHHHcCCChHHHHHHHHhCCCCCCCCCc-hHHHHHHHHHH
Q 038200 334 ACVRAELLTEGRKYFRQMIDFYKIKPNFAHY-----WCMANLYAGAELTEEAEEILRKMPEDNDNMSF-ESIMWVSLLSL 407 (523)
Q Consensus 334 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-----~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~~~l~~~ 407 (523)
.....|+.+.|...++..............+ ...+..+...|+.+.|.+++........+... ....+..+..+
T Consensus 621 ~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~ 700 (903)
T PRK04841 621 ISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARA 700 (903)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHH
Confidence 7788999999999998886531111111111 11224455689999999998887642211110 11123455667
Q ss_pred HHhcCCHHHHHHHHHHHhhcC------CCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 038200 408 CRFQGAVAMVERLAKSFVDMD------PQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRR 462 (523)
Q Consensus 408 ~~~~g~~~~a~~~~~~~~~~~------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 462 (523)
+...|+.++|...++++.+.. +....++..++.+|.+.|+.++|...+.+..+..
T Consensus 701 ~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 701 QILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 888999999999999988742 1233467788999999999999999999987753
No 103
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.85 E-value=1.6e-05 Score=79.42 Aligned_cols=396 Identities=11% Similarity=0.044 Sum_probs=246.5
Q ss_pred hHhHHHHHHHHhCCCCCChhHHHHHHHHhhccCCchhHHHHhccCC------------CCCc------------------
Q 038200 3 QLLQIQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCIN------------NPGT------------------ 52 (523)
Q Consensus 3 ~~~~i~~~~~~~g~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~------------~~~~------------------ 52 (523)
......+..+..|.. ++.++|+|...|..+++-.+ +++.+-+ ++|.
T Consensus 856 lLlp~LE~~i~eG~~--d~a~hnAlaKIyIDSNNnPE--~fLkeN~yYDs~vVGkYCEKRDP~lA~vaYerGqcD~elI~ 931 (1666)
T KOG0985|consen 856 LLLPWLESLIQEGSQ--DPATHNALAKIYIDSNNNPE--RFLKENPYYDSKVVGKYCEKRDPHLACVAYERGQCDLELIN 931 (1666)
T ss_pred HHHHHHHHHHhccCc--chHHHhhhhheeecCCCChH--HhcccCCcchhhHHhhhhcccCCceEEEeecccCCcHHHHH
Confidence 345566777777866 89999999998887665432 2222111 1111
Q ss_pred -----ccHHHHHHHHHhCCCchHHHHHH-----------HHHHHCCC--CCCcccHHHHHHHHHccCCchHHHHHHHHHH
Q 038200 53 -----FCVNAVIKAYSNSCVPDQGVVFY-----------LQMIKNGF--MPNSYTFVSLFGSCAKTGCVERGGMCHGLAL 114 (523)
Q Consensus 53 -----~~~~~ll~~~~~~~~~~~a~~~~-----------~~m~~~~~--~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 114 (523)
..|....+.+.++.+.+-=.+++ ++..+.++ ..|+...+..+.++...+-..+-.++++++.
T Consensus 932 vcNeNSlfK~~aRYlv~R~D~~LW~~VL~e~n~~rRqLiDqVv~tal~E~~dPe~vS~tVkAfMtadLp~eLIELLEKIv 1011 (1666)
T KOG0985|consen 932 VCNENSLFKSQARYLVERSDPDLWAKVLNEENPYRRQLIDQVVQTALPETQDPEEVSVTVKAFMTADLPNELIELLEKIV 1011 (1666)
T ss_pred hcCchhHHHHHHHHHHhccChHHHHHHHhccChHHHHHHHHHHHhcCCccCChHHHHHHHHHHHhcCCcHHHHHHHHHHh
Confidence 11333334444455544333332 11122221 2244445556666666666666666666665
Q ss_pred HhC--CCCCchHHHHHHHHHHccCChHHHHHHHhhcCCCCcchHHHHHHHHHhcCCHHHHHHHHhcCCC-----------
Q 038200 115 KNG--VDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPE----------- 181 (523)
Q Consensus 115 ~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~----------- 181 (523)
-.+ +.-+...-|.|+-...+ -+...+.+..+++..-|.. .+.......+-+++|..+|++...
T Consensus 1012 L~~S~Fse~~nLQnLLiLtAik-ad~trVm~YI~rLdnyDa~---~ia~iai~~~LyEEAF~ifkkf~~n~~A~~VLie~ 1087 (1666)
T KOG0985|consen 1012 LDNSVFSENRNLQNLLILTAIK-ADRTRVMEYINRLDNYDAP---DIAEIAIENQLYEEAFAIFKKFDMNVSAIQVLIEN 1087 (1666)
T ss_pred cCCcccccchhhhhhHHHHHhh-cChHHHHHHHHHhccCCch---hHHHHHhhhhHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 321 11122333444433333 2334444454444321111 011122233444555555544321
Q ss_pred --------------CChhHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHH
Q 038200 182 --------------RNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVR 247 (523)
Q Consensus 182 --------------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 247 (523)
.....|..+..+-.+.|...+|.+-|-+ ..|+..|..+++.+.+.|.+++-..++.-..+
T Consensus 1088 i~~ldRA~efAe~~n~p~vWsqlakAQL~~~~v~dAieSyik------adDps~y~eVi~~a~~~~~~edLv~yL~MaRk 1161 (1666)
T KOG0985|consen 1088 IGSLDRAYEFAERCNEPAVWSQLAKAQLQGGLVKDAIESYIK------ADDPSNYLEVIDVASRTGKYEDLVKYLLMARK 1161 (1666)
T ss_pred hhhHHHHHHHHHhhCChHHHHHHHHHHHhcCchHHHHHHHHh------cCCcHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 2346788888888888888888776643 23667888899999999999998888877776
Q ss_pred cCCCCchHHHHHHhhhhhhcCChHHHHHHHHhcCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcCCCHHH
Q 038200 248 TSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEIT 327 (523)
Q Consensus 248 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~p~~~~ 327 (523)
..-.|. +-+.|+-+|++.+++.+.++++ .-||......+..-|...|.++.|.-+|... ..
T Consensus 1162 k~~E~~--id~eLi~AyAkt~rl~elE~fi---~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~v--------------SN 1222 (1666)
T KOG0985|consen 1162 KVREPY--IDSELIFAYAKTNRLTELEEFI---AGPNVANIQQVGDRCFEEKMYEAAKLLYSNV--------------SN 1222 (1666)
T ss_pred hhcCcc--chHHHHHHHHHhchHHHHHHHh---cCCCchhHHHHhHHHhhhhhhHHHHHHHHHh--------------hh
Confidence 654444 3456888888888887766653 3467777777888888888888887777533 34
Q ss_pred HHHHHHHHhhcCcHHHHHHHHHHhhHhcCCCCChHHHHHHHHHHHcCCChHHHHHHHHhCCCCCCCCCchHHHHHHHHHH
Q 038200 328 FIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSL 407 (523)
Q Consensus 328 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~ 407 (523)
|..|...+...|++..|...-+++. +..+|..+-.+|...+.+.-|. |. +..+-....-...++..
T Consensus 1223 ~a~La~TLV~LgeyQ~AVD~aRKAn-------s~ktWK~VcfaCvd~~EFrlAQ-----iC--GL~iivhadeLeeli~~ 1288 (1666)
T KOG0985|consen 1223 FAKLASTLVYLGEYQGAVDAARKAN-------STKTWKEVCFACVDKEEFRLAQ-----IC--GLNIIVHADELEELIEY 1288 (1666)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhcc-------chhHHHHHHHHHhchhhhhHHH-----hc--CceEEEehHhHHHHHHH
Confidence 6667777778888888876655543 5678888888887766655442 33 33344556677788999
Q ss_pred HHhcCCHHHHHHHHHHHhhcCCCChhhHHHHHHHHHhc
Q 038200 408 CRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVA 445 (523)
Q Consensus 408 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 445 (523)
|...|-+++-..+++..+.++..+...|..|+-.|++-
T Consensus 1289 Yq~rGyFeElIsl~Ea~LGLERAHMgmfTELaiLYsky 1326 (1666)
T KOG0985|consen 1289 YQDRGYFEELISLLEAGLGLERAHMGMFTELAILYSKY 1326 (1666)
T ss_pred HHhcCcHHHHHHHHHhhhchhHHHHHHHHHHHHHHHhc
Confidence 99999999999999999998888888888888888764
No 104
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.84 E-value=5.1e-07 Score=92.71 Aligned_cols=203 Identities=13% Similarity=0.124 Sum_probs=167.5
Q ss_pred CchHHHHHHhhhhhhcCChHHHHHHHHhcCC--------CChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcCC
Q 038200 252 PNIILDTALIDLYSKCQKVEVAQRVFDSMAD--------RNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISP 323 (523)
Q Consensus 252 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--------~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~p 323 (523)
.+...|-..|......+++++|.+++++... .-...|.+++..-...|.-+...++|+++.+. .-
T Consensus 1456 NSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy-------cd 1528 (1710)
T KOG1070|consen 1456 NSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY-------CD 1528 (1710)
T ss_pred CcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh-------cc
Confidence 3466777788888888999999999988754 13357888888777788888899999999884 34
Q ss_pred CHHHHHHHHHHHhhcCcHHHHHHHHHHhhHhcCCCCChHHHHHHHHHHHcCCChHHHHHHHHhCCCCCCCCCc---hHHH
Q 038200 324 DEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSF---ESIM 400 (523)
Q Consensus 324 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~ 400 (523)
....|..|...|.+.+.+++|.++|+.|.++++ -....|...+..+.+..+-+.|..++.++++. -| ....
T Consensus 1529 ~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~--q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~----lPk~eHv~~ 1602 (1710)
T KOG1070|consen 1529 AYTVHLKLLGIYEKSEKNDEADELLRLMLKKFG--QTRKVWIMYADFLLRQNEAEAARELLKRALKS----LPKQEHVEF 1602 (1710)
T ss_pred hHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhc--chhhHHHHHHHHHhcccHHHHHHHHHHHHHhh----cchhhhHHH
Confidence 456788999999999999999999999999655 56788999999999999999999999998853 33 3445
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCC
Q 038200 401 WVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMP 467 (523)
Q Consensus 401 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~ 467 (523)
....+..-.+.|+.+++..+|+-.+...|.-...|..+++.-.+.|+.+.+..+|++....++++..
T Consensus 1603 IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kk 1669 (1710)
T KOG1070|consen 1603 ISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKK 1669 (1710)
T ss_pred HHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhH
Confidence 5555666778899999999999999999988889999999999999999999999999888775533
No 105
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.82 E-value=3.1e-06 Score=82.59 Aligned_cols=321 Identities=13% Similarity=0.102 Sum_probs=171.1
Q ss_pred HccCCchHHHHHHHHHHHhCCCCCchHHHHHHHHHHccCChHHHHHHHhhcCC------------CCcchHHHHHHHHHh
Q 038200 98 AKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSP------------RDLISWNSIVSGHVR 165 (523)
Q Consensus 98 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~------------~~~~~~~~ll~~~~~ 165 (523)
...|+.+.|.+-.+.+. +..+|..+.++|.+..+++-|.-.+-.|.. .+..+-..+.-.-..
T Consensus 739 vtiG~MD~AfksI~~Ik------S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~e~eakvAvLAie 812 (1416)
T KOG3617|consen 739 VTIGSMDAAFKSIQFIK------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGEEDEAKVAVLAIE 812 (1416)
T ss_pred EEeccHHHHHHHHHHHh------hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCcchhhHHHHHHHH
Confidence 34455565555444432 345566666666666666666665555541 011111112222234
Q ss_pred cCCHHHHHHHHhcCCCCChhHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHH
Q 038200 166 SGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYT 245 (523)
Q Consensus 166 ~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 245 (523)
.|.+++|+.+|.+.+. |..|=..|...|.|++|+++-+.--. +. =..||..-..-+...++.+.|++.|++.
T Consensus 813 LgMlEeA~~lYr~ckR-----~DLlNKlyQs~g~w~eA~eiAE~~DR--iH-Lr~Tyy~yA~~Lear~Di~~AleyyEK~ 884 (1416)
T KOG3617|consen 813 LGMLEEALILYRQCKR-----YDLLNKLYQSQGMWSEAFEIAETKDR--IH-LRNTYYNYAKYLEARRDIEAALEYYEKA 884 (1416)
T ss_pred HhhHHHHHHHHHHHHH-----HHHHHHHHHhcccHHHHHHHHhhccc--ee-hhhhHHHHHHHHHhhccHHHHHHHHHhc
Confidence 5666666666665543 22233445556666666655432111 11 1234444444444555555555555432
Q ss_pred ----------HHcCC---------CCchHHHHHHhhhhhhcCChHHHHHHHHhcCCCChHHHHHHHHHHHhcCChHHHHH
Q 038200 246 ----------VRTSL---------KPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIK 306 (523)
Q Consensus 246 ----------~~~~~---------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 306 (523)
+...+ ..|...|.--.......|+.+.|+.+|.... -|-+++...|-.|+.++|.+
T Consensus 885 ~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~-----D~fs~VrI~C~qGk~~kAa~ 959 (1416)
T KOG3617|consen 885 GVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAK-----DYFSMVRIKCIQGKTDKAAR 959 (1416)
T ss_pred CChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhh-----hhhhheeeEeeccCchHHHH
Confidence 11110 1133444445555556777888888777654 36667777777888888877
Q ss_pred HHHHHHhCCCCCCCcCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhHhc-CCC--CChHHHHHHHHHHH--cCCChHHHH
Q 038200 307 LFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFY-KIK--PNFAHYWCMANLYA--GAELTEEAE 381 (523)
Q Consensus 307 ~~~~m~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~--~~~~~~~~l~~~~~--~~g~~~~A~ 381 (523)
+-++ .-|......|.+.|...|++.+|..+|-++..-- -+. ..-..-..|..... ...+.-.|.
T Consensus 960 iA~e-----------sgd~AAcYhlaR~YEn~g~v~~Av~FfTrAqafsnAIRlcKEnd~~d~L~nlal~s~~~d~v~aA 1028 (1416)
T KOG3617|consen 960 IAEE-----------SGDKAACYHLARMYENDGDVVKAVKFFTRAQAFSNAIRLCKENDMKDRLANLALMSGGSDLVSAA 1028 (1416)
T ss_pred HHHh-----------cccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhhcCchhHHHHH
Confidence 7653 2355566677888888888888888887765410 000 00000111222222 223344555
Q ss_pred HHHHhCCCCCCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHH---------H-hhcCCC-ChhhHHHHHHHHHhcCChhH
Q 038200 382 EILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKS---------F-VDMDPQ-DFSRYQFLLNVYAVAGQWED 450 (523)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~---------~-~~~~p~-~~~~~~~l~~~~~~~g~~~~ 450 (523)
++|++..- -+...+..|.+.|.+.+|+++.-. + ..++|. ||......++.+....++++
T Consensus 1029 rYyEe~g~----------~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~qyek 1098 (1416)
T KOG3617|consen 1029 RYYEELGG----------YAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFENNQQYEK 1098 (1416)
T ss_pred HHHHHcch----------hhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHHHHHH
Confidence 66666551 112223446677777777665322 1 125664 78888888888888888888
Q ss_pred HHHHHHHH
Q 038200 451 VARVRELM 458 (523)
Q Consensus 451 A~~~~~~m 458 (523)
|..++-..
T Consensus 1099 AV~lL~~a 1106 (1416)
T KOG3617|consen 1099 AVNLLCLA 1106 (1416)
T ss_pred HHHHHHHH
Confidence 88766544
No 106
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.82 E-value=1.8e-05 Score=73.96 Aligned_cols=409 Identities=10% Similarity=-0.039 Sum_probs=246.5
Q ss_pred HHHHHHHHhCCCCCChhHHHHHHHHhhccCCchhHHHHhccCC---CCCcccHHHHHHHHHhCCCchHHHHHHHHHHHCC
Q 038200 6 QIQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCIN---NPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNG 82 (523)
Q Consensus 6 ~i~~~~~~~g~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~ 82 (523)
.|-...-...++|+|...|+.-..+|++.|++++|.+=-.+-. +.-...|+....++.-.|++++|+.-|.+-++..
T Consensus 21 ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg~~~eA~~ay~~GL~~d 100 (539)
T KOG0548|consen 21 AIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLGDYEEAILAYSEGLEKD 100 (539)
T ss_pred HHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhcccHHHHHHHHHHHhhcC
Confidence 3445555667888899999999999999999999987654433 3345689999999999999999999999988764
Q ss_pred CCCCcccHHHHHHHHHccCCc---hHHHHHHHHHHHh---CCCCCchHHHHHHHHHHcc----------CChHHHHHHHh
Q 038200 83 FMPNSYTFVSLFGSCAKTGCV---ERGGMCHGLALKN---GVDFELPVMNSLINMYGCF----------GAMDCARNMFV 146 (523)
Q Consensus 83 ~~p~~~~~~~ll~~~~~~~~~---~~a~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~----------g~~~~A~~~~~ 146 (523)
+.|...++.+..+....... -.--.++..+... ........|..++..+-+. ..+..|.-++.
T Consensus 101 -~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~l~d~r~m~a~~~l~ 179 (539)
T KOG0548|consen 101 -PSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLYLNDPRLMKADGQLK 179 (539)
T ss_pred -CchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhcccccHHHHHHHHHHh
Confidence 44455666666665111000 0000011111000 0000111222222222110 00111111111
Q ss_pred hcCCCCcchHHHHHHHHH-hcCCHHHHHHHHhcCCC--C-------------ChhHHHHHHHHHHhcCCchHHHHHHHHH
Q 038200 147 QMSPRDLISWNSIVSGHV-RSGDMSAAHELFDIMPE--R-------------NVVSWNIMISGYSKSGNPGCSLKLFREM 210 (523)
Q Consensus 147 ~~~~~~~~~~~~ll~~~~-~~~~~~~a~~~~~~~~~--~-------------~~~~~~~li~~~~~~~~~~~a~~~~~~m 210 (523)
....+ ....--.... ...... ..+.+ | -..-...+.++..+..+++.|.+-+...
T Consensus 180 ~~~~~---~~~~~~~~~~~~~~~p~------~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q~y~~a 250 (539)
T KOG0548|consen 180 GVDEL---LFYASGIEILASMAEPC------KQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQHYAKA 250 (539)
T ss_pred cCccc---cccccccccCCCCCCcc------cccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 10000 0000000000 000000 01100 0 1123456777788888999999999888
Q ss_pred HHCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHcCCCCchHHHHH-------HhhhhhhcCChHHHHHHHHhcCCC
Q 038200 211 MKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTA-------LIDLYSKCQKVEVAQRVFDSMADR 283 (523)
Q Consensus 211 ~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-------l~~~~~~~~~~~~a~~~~~~~~~~ 283 (523)
.... -+..-++....++...|.+......-....+.|.. ...-|+. +..+|.+.++++.++..|.+...+
T Consensus 251 ~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~kaLte 327 (539)
T KOG0548|consen 251 LELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARLGNAYTKREDYEGAIKYYQKALTE 327 (539)
T ss_pred HhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhh
Confidence 8754 34445566667788888888877777766665532 2222222 344667778899999999886442
Q ss_pred ChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcCCCHH-HHHHHHHHHhhcCcHHHHHHHHHHhhHhcCCCCChH
Q 038200 284 NLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEI-TFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFA 362 (523)
Q Consensus 284 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 362 (523)
... -....+....++++...+...- +.|... -...-...+.+.|++..|+..|.++++ ..+-|..
T Consensus 328 ~Rt-----~~~ls~lk~~Ek~~k~~e~~a~-------~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIk--r~P~Da~ 393 (539)
T KOG0548|consen 328 HRT-----PDLLSKLKEAEKALKEAERKAY-------INPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIK--RDPEDAR 393 (539)
T ss_pred hcC-----HHHHHHHHHHHHHHHHHHHHHh-------hChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHh--cCCchhH
Confidence 111 1122233455666666655554 335432 222335667889999999999999998 4566789
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHhCCCCCCCCCch-HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhhHHHHHHH
Q 038200 363 HYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFE-SIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNV 441 (523)
Q Consensus 363 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 441 (523)
.|..-.-+|.+.|.+..|++-.+...+. .|+ ...|..-..++....+++.|.+.|++..+.+|++......+.++
T Consensus 394 lYsNRAac~~kL~~~~~aL~Da~~~ieL----~p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp~~~e~~~~~~rc 469 (539)
T KOG0548|consen 394 LYSNRAACYLKLGEYPEALKDAKKCIEL----DPNFIKAYLRKGAALRAMKEYDKALEAYQEALELDPSNAEAIDGYRRC 469 (539)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHhc----CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHH
Confidence 9999999999999999999988888864 343 44444445566667789999999999999999887777777766
Q ss_pred HHhc
Q 038200 442 YAVA 445 (523)
Q Consensus 442 ~~~~ 445 (523)
+...
T Consensus 470 ~~a~ 473 (539)
T KOG0548|consen 470 VEAQ 473 (539)
T ss_pred HHHh
Confidence 6653
No 107
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.81 E-value=6.5e-07 Score=79.62 Aligned_cols=59 Identities=12% Similarity=0.084 Sum_probs=51.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhcCCCC---hhhHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 038200 403 SLLSLCRFQGAVAMVERLAKSFVDMDPQD---FSRYQFLLNVYAVAGQWEDVARVRELMKKR 461 (523)
Q Consensus 403 ~l~~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 461 (523)
.+...+...|+++.|...++.+.+..|++ +..+..++.++.+.|++++|..+++.+..+
T Consensus 171 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 171 YVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 34556888999999999999999987654 578999999999999999999999988665
No 108
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.81 E-value=2.2e-05 Score=84.84 Aligned_cols=62 Identities=19% Similarity=0.142 Sum_probs=27.6
Q ss_pred HHHHHHHcCCChHHHHHHHHhCCCC--CCCCCch-HHHHHHHHHHHHhcCCHHHHHHHHHHHhhc
Q 038200 366 CMANLYAGAELTEEAEEILRKMPED--NDNMSFE-SIMWVSLLSLCRFQGAVAMVERLAKSFVDM 427 (523)
Q Consensus 366 ~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 427 (523)
.+..++...|++++|...+++.... ..+..++ ..+...+..++...|+.++|...+.++.++
T Consensus 696 ~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~l 760 (903)
T PRK04841 696 NIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKL 760 (903)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3444455555555555555544321 0111111 223333344455555555555555555553
No 109
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.79 E-value=1.3e-06 Score=86.86 Aligned_cols=439 Identities=10% Similarity=0.037 Sum_probs=255.6
Q ss_pred CchHHHHHHHHHHHCCCCCCcccHHHHHHHHHccCCchHHHHHHHHHHHhCCCCCchHHHHHHHHHHccCChHHHHHHHh
Q 038200 67 VPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFV 146 (523)
Q Consensus 67 ~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 146 (523)
+...|+..|-+..+.+ ..=...|..|...|....+...|.+.|+...+.+.. +......+.+.|++..+++.|..+.-
T Consensus 473 ~~~~al~ali~alrld-~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDat-daeaaaa~adtyae~~~we~a~~I~l 550 (1238)
T KOG1127|consen 473 NSALALHALIRALRLD-VSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDAT-DAEAAAASADTYAEESTWEEAFEICL 550 (1238)
T ss_pred hHHHHHHHHHHHHhcc-cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCch-hhhhHHHHHHHhhccccHHHHHHHHH
Confidence 3555666665555432 112336777888777777777888888888776533 67778888888999899988888844
Q ss_pred hcCCCCc-----chHHHHHHHHHhcCCHHHHHHHHhcCCC---CChhHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCC
Q 038200 147 QMSPRDL-----ISWNSIVSGHVRSGDMSAAHELFDIMPE---RNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGN 218 (523)
Q Consensus 147 ~~~~~~~-----~~~~~ll~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~ 218 (523)
...+.+. ..|--..-.|.+.++...|+.-|+.... .|...|..++.+|...|.+..|+++|.+.... .|+
T Consensus 551 ~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~L--rP~ 628 (1238)
T KOG1127|consen 551 RAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLL--RPL 628 (1238)
T ss_pred HHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhc--CcH
Confidence 3333221 2233334446778888888888887765 46778888999999999999999999888773 454
Q ss_pred HH-HHHHHHHHHhccccHHHHHHHHHHHHHcCC------CCchHHHHHHhhhhhhcCChHHHHHHHHhcC-------C--
Q 038200 219 DK-TMASVLTACGRSARFNEGRSVHGYTVRTSL------KPNIILDTALIDLYSKCQKVEVAQRVFDSMA-------D-- 282 (523)
Q Consensus 219 ~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-------~-- 282 (523)
.. .--......+..|.+.++...+.......- ..-..++-.+...+.-.|-..+|..++++-. .
T Consensus 629 s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~ 708 (1238)
T KOG1127|consen 629 SKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHS 708 (1238)
T ss_pred hHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHh
Confidence 32 112222334678888888888877665310 0011222222222222232233333333221 1
Q ss_pred --CChHHHHHHHHHHHhcCChH--H----HHHH-HHHHHhCCCC---------------CCCcCCCHHHHHHHHHHHhh-
Q 038200 283 --RNLVCWNAMILGHCIHGKPE--E----GIKL-FTALVNGTVA---------------GGSISPDEITFIGVICACVR- 337 (523)
Q Consensus 283 --~~~~~~~~li~~~~~~g~~~--~----a~~~-~~~m~~~~~~---------------~~~~~p~~~~~~~ll~~~~~- 337 (523)
.+...|-.+..+|...-..+ . ...+ +.+....+.. ......+..+|..|+..|.+
T Consensus 709 ~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLGinylr~ 788 (1238)
T KOG1127|consen 709 LQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNLGINYLRY 788 (1238)
T ss_pred hhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHHHHhHHHHHH
Confidence 12222222222211000000 0 0001 1111111100 00011223334444433332
Q ss_pred ------c-CcHHHHHHHHHHhhHhcCCCCChHHHHHHHHHHHcCCChHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHh
Q 038200 338 ------A-ELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRF 410 (523)
Q Consensus 338 ------~-~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 410 (523)
. .+...|...+.+.++. -..+..+|+.|. .....|++.-|...|-+.... .+....+|..+...|..
T Consensus 789 f~~l~et~~~~~~Ai~c~KkaV~L--~ann~~~WnaLG-Vlsg~gnva~aQHCfIks~~s---ep~~~~~W~NlgvL~l~ 862 (1238)
T KOG1127|consen 789 FLLLGETMKDACTAIRCCKKAVSL--CANNEGLWNALG-VLSGIGNVACAQHCFIKSRFS---EPTCHCQWLNLGVLVLE 862 (1238)
T ss_pred HHHcCCcchhHHHHHHHHHHHHHH--hhccHHHHHHHH-Hhhccchhhhhhhhhhhhhhc---cccchhheeccceeEEe
Confidence 1 2334677777777662 233455555554 447778888888887766642 34467788888888999
Q ss_pred cCCHHHHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHH--HHhCCCccCCcee-E-----EEe-CCeEEEE
Q 038200 411 QGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVREL--MKKRRMGRMPGCR-L-----VDL-KEVVEKL 481 (523)
Q Consensus 411 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~--m~~~~~~~~~~~~-~-----~~~-~~~~~~~ 481 (523)
..+++-|...+.+...++|.+...|...+......|+.-++..+|.. ....+-...++.- | ... ++-...+
T Consensus 863 n~d~E~A~~af~~~qSLdP~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~ 942 (1238)
T KOG1127|consen 863 NQDFEHAEPAFSSVQSLDPLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEES 942 (1238)
T ss_pred cccHHHhhHHHHhhhhcCchhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHH
Confidence 99999999999999999999988888888888889998888888876 2222223333320 0 011 1111222
Q ss_pred ecCCCCchHHHHHHHHHHhcccCCcccccccccc
Q 038200 482 KVGHFWRGGMKEEVNKMMECRQSRSLATVSKQLP 515 (523)
Q Consensus 482 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 515 (523)
+.....+..+--.+++.....|+...|....|++
T Consensus 943 I~t~~ki~sAs~al~~yf~~~p~~~fAy~~~gst 976 (1238)
T KOG1127|consen 943 INTARKISSASLALSYYFLGHPQLCFAYAANGST 976 (1238)
T ss_pred HHHhhhhhhhHHHHHHHHhcCcchhHHHHHHHhH
Confidence 2222445556666778888888888888777765
No 110
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.76 E-value=3.7e-07 Score=73.58 Aligned_cols=110 Identities=8% Similarity=-0.086 Sum_probs=67.7
Q ss_pred HHHHHHHHhhcCcHHHHHHHHHHhhHhcCCCCChHHHHHHHHHHHcCCChHHHHHHHHhCCCCCCCCCchHHHHHHHHHH
Q 038200 328 FIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSL 407 (523)
Q Consensus 328 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~ 407 (523)
+..+..++...|++++|...|+.+.. --+.+...|..+..++...|++++|...|++.... .+.+...+..+..+
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l---~p~~~~a~~~lg~~ 101 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVM--AQPWSWRAHIALAGTWMMLKEYTTAINFYGHALML---DASHPEPVYQTGVC 101 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc---CCCCcHHHHHHHHH
Confidence 33445556666666666666666665 23335566666666666666777777666666642 23345556666666
Q ss_pred HHhcCCHHHHHHHHHHHhhcCCCChhhHHHHHHHH
Q 038200 408 CRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVY 442 (523)
Q Consensus 408 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 442 (523)
+...|+.++|...++.+++..|+++..+.....++
T Consensus 102 l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~ 136 (144)
T PRK15359 102 LKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQ 136 (144)
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence 66667777777777776666666666665555444
No 111
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.74 E-value=3e-07 Score=74.08 Aligned_cols=109 Identities=6% Similarity=-0.065 Sum_probs=93.2
Q ss_pred HHHHHhhHhcCCCCChHHHHHHHHHHHcCCChHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 038200 346 KYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFV 425 (523)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 425 (523)
.++++..+ +.| ..+..+...+...|++++|...|+..... -+.+...+..+..++...|++++|...|+++.
T Consensus 14 ~~~~~al~---~~p--~~~~~~g~~~~~~g~~~~A~~~~~~al~~---~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al 85 (144)
T PRK15359 14 DILKQLLS---VDP--ETVYASGYASWQEGDYSRAVIDFSWLVMA---QPWSWRAHIALAGTWMMLKEYTTAINFYGHAL 85 (144)
T ss_pred HHHHHHHH---cCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHc---CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 45555554 234 34667788899999999999999998853 24467888888889999999999999999999
Q ss_pred hcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 038200 426 DMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRR 462 (523)
Q Consensus 426 ~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 462 (523)
+++|+++..+..++.++...|++++|+..|++..+..
T Consensus 86 ~l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~ 122 (144)
T PRK15359 86 MLDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMS 122 (144)
T ss_pred hcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999999987754
No 112
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.72 E-value=3.7e-05 Score=67.80 Aligned_cols=285 Identities=10% Similarity=0.048 Sum_probs=138.3
Q ss_pred hHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHcCCCCchH-HHHHHhhh
Q 038200 185 VSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNII-LDTALIDL 263 (523)
Q Consensus 185 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~ 263 (523)
.-.--+...+...|++..|+.-|...++.+ +.+-.++..-...|...|+...|..-+...++. .||-. .-..-...
T Consensus 39 ekhlElGk~lla~~Q~sDALt~yHaAve~d-p~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQRg~v 115 (504)
T KOG0624|consen 39 EKHLELGKELLARGQLSDALTHYHAAVEGD-PNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQRGVV 115 (504)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHcCC-chhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHhchh
Confidence 334445556666667777777776666532 112233444445566666666666666666663 34422 12223345
Q ss_pred hhhcCChHHHHHHHHhcCCCCh------HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcCCCHHHHHHHHHHHhh
Q 038200 264 YSKCQKVEVAQRVFDSMADRNL------VCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVR 337 (523)
Q Consensus 264 ~~~~~~~~~a~~~~~~~~~~~~------~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~ll~~~~~ 337 (523)
+.+.|.++.|..-|+.+.+.++ ..+..++.. ++ .......+..+.-
T Consensus 116 llK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~-------~e---------------------~~~l~~ql~s~~~ 167 (504)
T KOG0624|consen 116 LLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALI-------QE---------------------HWVLVQQLKSASG 167 (504)
T ss_pred hhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhH-------HH---------------------HHHHHHHHHHHhc
Confidence 5566666666666666544221 111111100 00 0011122233344
Q ss_pred cCcHHHHHHHHHHhhHhcCCCCChHHHHHHHHHHHcCCChHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHhcCCHHHH
Q 038200 338 AELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMV 417 (523)
Q Consensus 338 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 417 (523)
.|+...|+.....+.+ -.+.+...|..-..+|...|.+..|+.-++...+. ...+...+..+-..+...|+.+.+
T Consensus 168 ~GD~~~ai~~i~~llE--i~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askL---s~DnTe~~ykis~L~Y~vgd~~~s 242 (504)
T KOG0624|consen 168 SGDCQNAIEMITHLLE--IQPWDASLRQARAKCYIAEGEPKKAIHDLKQASKL---SQDNTEGHYKISQLLYTVGDAENS 242 (504)
T ss_pred CCchhhHHHHHHHHHh--cCcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhc---cccchHHHHHHHHHHHhhhhHHHH
Confidence 5666666666666655 23345555555566666666666666555554432 122233334444445556666666
Q ss_pred HHHHHHHhhcCCCChhhHHHH------------HHHHHhcCChhHHHHHHHHHHhCCCccCCceeEEEeCC-eEEEE-ec
Q 038200 418 ERLAKSFVDMDPQDFSRYQFL------------LNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLKE-VVEKL-KV 483 (523)
Q Consensus 418 ~~~~~~~~~~~p~~~~~~~~l------------~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~-~~~~~-~~ 483 (523)
+...+..++++|+.-.+|-.. +......++|.++++..+...+.. |....+.++. ++.+- ..
T Consensus 243 L~~iRECLKldpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~e----p~~~~ir~~~~r~~c~C~~ 318 (504)
T KOG0624|consen 243 LKEIRECLKLDPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNE----PEETMIRYNGFRVLCTCYR 318 (504)
T ss_pred HHHHHHHHccCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcC----Ccccceeeeeeheeeeccc
Confidence 666666666666543332211 112334455666666666554432 2211122211 11111 12
Q ss_pred CCCCchHHHHHHHHHHhcccCCcccc
Q 038200 484 GHFWRGGMKEEVNKMMECRQSRSLAT 509 (523)
Q Consensus 484 ~~~~~~~~~~~l~~~~~~~~~~~~~~ 509 (523)
++++..++++.-++++...|++..++
T Consensus 319 ~d~~~~eAiqqC~evL~~d~~dv~~l 344 (504)
T KOG0624|consen 319 EDEQFGEAIQQCKEVLDIDPDDVQVL 344 (504)
T ss_pred ccCCHHHHHHHHHHHHhcCchHHHHH
Confidence 23566666666666666666655443
No 113
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.69 E-value=1.5e-06 Score=81.71 Aligned_cols=250 Identities=11% Similarity=0.020 Sum_probs=181.5
Q ss_pred HHHhcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHcCCCCchHHHHHHhhhhhhcCChHH
Q 038200 193 GYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEV 272 (523)
Q Consensus 193 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 272 (523)
-+.+.|+..+|.-.|+..++.+ +-+...|..|.......++-..|+..+.+.++.. +.+..+.-.|.-.|...|.-..
T Consensus 294 ~lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~q~~ 371 (579)
T KOG1125|consen 294 NLMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGLQNQ 371 (579)
T ss_pred HHHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhHHH
Confidence 4567788888888888888764 3466788888888888888888888888888864 3367777788888888888888
Q ss_pred HHHHHHhcCCCCh-HHHHHHH---------HHHHhcCChHHHHHHHHHHHhCCCCCCCcCCCHHHHHHHHHHHhhcCcHH
Q 038200 273 AQRVFDSMADRNL-VCWNAMI---------LGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLT 342 (523)
Q Consensus 273 a~~~~~~~~~~~~-~~~~~li---------~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~ 342 (523)
|.+.++.-..... ..|...- ..+..........++|-++.... +..+|+.....|.-.|--.|+++
T Consensus 372 Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~----~~~~DpdvQ~~LGVLy~ls~efd 447 (579)
T KOG1125|consen 372 ALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQL----PTKIDPDVQSGLGVLYNLSGEFD 447 (579)
T ss_pred HHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhC----CCCCChhHHhhhHHHHhcchHHH
Confidence 8888776522100 0000000 12222233445566666665543 14477888888888888899999
Q ss_pred HHHHHHHHhhHhcCCCCChHHHHHHHHHHHcCCChHHHHHHHHhCCCCCCCCCch-HHHHHHHHHHHHhcCCHHHHHHHH
Q 038200 343 EGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFE-SIMWVSLLSLCRFQGAVAMVERLA 421 (523)
Q Consensus 343 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~ 421 (523)
+|...|+.+.. --+-|..+|+.|...++...+.++|+..|+++++ +.|. ......|...|...|.+++|...|
T Consensus 448 raiDcf~~AL~--v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALq----LqP~yVR~RyNlgIS~mNlG~ykEA~~hl 521 (579)
T KOG1125|consen 448 RAVDCFEAALQ--VKPNDYLLWNRLGATLANGNRSEEAISAYNRALQ----LQPGYVRVRYNLGISCMNLGAYKEAVKHL 521 (579)
T ss_pred HHHHHHHHHHh--cCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHh----cCCCeeeeehhhhhhhhhhhhHHHHHHHH
Confidence 99999999987 2344688999999999999999999999999996 5665 556677888899999999999999
Q ss_pred HHHhhcCCC----------ChhhHHHHHHHHHhcCChhHHHHH
Q 038200 422 KSFVDMDPQ----------DFSRYQFLLNVYAVAGQWEDVARV 454 (523)
Q Consensus 422 ~~~~~~~p~----------~~~~~~~l~~~~~~~g~~~~A~~~ 454 (523)
-.++.+.+. +..+|..|=.++.-.++.|-+.++
T Consensus 522 L~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~a 564 (579)
T KOG1125|consen 522 LEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQEA 564 (579)
T ss_pred HHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHHh
Confidence 998875433 124777777777777877755544
No 114
>PLN02789 farnesyltranstransferase
Probab=98.69 E-value=9.4e-06 Score=74.41 Aligned_cols=133 Identities=8% Similarity=-0.018 Sum_probs=71.4
Q ss_pred HHHHHHHHHHHhCCCCCCCcCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhHhcCCCCChHHHHHHHHHHHcC---CC--
Q 038200 302 EEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGA---EL-- 376 (523)
Q Consensus 302 ~~a~~~~~~m~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~-- 376 (523)
++++.+++++.+.. +-|..+|....-++...|+++++++.++++.+. -.-|...|+....++.+. |.
T Consensus 125 ~~el~~~~kal~~d------pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~--d~~N~sAW~~R~~vl~~~~~l~~~~ 196 (320)
T PLN02789 125 NKELEFTRKILSLD------AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEE--DVRNNSAWNQRYFVITRSPLLGGLE 196 (320)
T ss_pred HHHHHHHHHHHHhC------cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--CCCchhHHHHHHHHHHhcccccccc
Confidence 34455555555432 223445555555555555555555555555552 122333444333333322 11
Q ss_pred --hHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHhc----CCHHHHHHHHHHHhhcCCCChhhHHHHHHHHHhc
Q 038200 377 --TEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQ----GAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVA 445 (523)
Q Consensus 377 --~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 445 (523)
.+++++...+++.. .+-+...|+.+...+... +...+|...+..+.+.+|.++.++..|+..|+..
T Consensus 197 ~~~e~el~y~~~aI~~---~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~ 268 (320)
T PLN02789 197 AMRDSELKYTIDAILA---NPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCEG 268 (320)
T ss_pred ccHHHHHHHHHHHHHh---CCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHhh
Confidence 23555666555532 233455666666665552 3445677777777777888888888888888763
No 115
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.67 E-value=2.8e-05 Score=66.21 Aligned_cols=248 Identities=14% Similarity=0.055 Sum_probs=141.1
Q ss_pred cCCHHHHHHHHhcCCC--CChhHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHH-HHHH
Q 038200 166 SGDMSAAHELFDIMPE--RNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEG-RSVH 242 (523)
Q Consensus 166 ~~~~~~a~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a-~~~~ 242 (523)
.|++..++..-..... .+...-..+.++|...|.+..... +... |-.|....+..+......-++.+.- .++.
T Consensus 21 ~Gnyq~~ine~~~~~~~~~~~e~d~y~~raylAlg~~~~~~~---eI~~-~~~~~lqAvr~~a~~~~~e~~~~~~~~~l~ 96 (299)
T KOG3081|consen 21 LGNYQQCINEAEKFSSSKTDVELDVYMYRAYLALGQYQIVIS---EIKE-GKATPLQAVRLLAEYLELESNKKSILASLY 96 (299)
T ss_pred hhHHHHHHHHHHhhccccchhHHHHHHHHHHHHccccccccc---cccc-ccCChHHHHHHHHHHhhCcchhHHHHHHHH
Confidence 4555555444433322 233333345556666666544332 1111 1233444444444444434443332 3444
Q ss_pred HHHHHcCCCCchHHHHHHhhhhhhcCChHHHHHHHHhcCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcC
Q 038200 243 GYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSIS 322 (523)
Q Consensus 243 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~ 322 (523)
+.+.......+......-...|+..|++++|++...... +......=+..+.+..+.+-|.+.+++|..-
T Consensus 97 E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~--~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~i-------- 166 (299)
T KOG3081|consen 97 ELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE--NLEAAALNVQILLKMHRFDLAEKELKKMQQI-------- 166 (299)
T ss_pred HHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc--------
Confidence 555544444443444444556777788888888777733 3333333345566677778888888888763
Q ss_pred CCHHHHHHHHHHHhh----cCcHHHHHHHHHHhhHhcCCCCChHHHHHHHHHHHcCCChHHHHHHHHhCCCCCCCCCchH
Q 038200 323 PDEITFIGVICACVR----AELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFES 398 (523)
Q Consensus 323 p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 398 (523)
-+..|.+.|..++.+ .+.+.+|.-+|+++.+ ..+|++.+.+....++...|++++|..++++...+. ..++
T Consensus 167 ded~tLtQLA~awv~la~ggek~qdAfyifeE~s~--k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd---~~dp 241 (299)
T KOG3081|consen 167 DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSE--KTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKD---AKDP 241 (299)
T ss_pred chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhc--ccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhcc---CCCH
Confidence 345566666666543 3457777888888876 567777777777777777888888888888777542 3344
Q ss_pred HHHHHHHHHHHhcCC-HHHHHHHHHHHhhcCCCCh
Q 038200 399 IMWVSLLSLCRFQGA-VAMVERLAKSFVDMDPQDF 432 (523)
Q Consensus 399 ~~~~~l~~~~~~~g~-~~~a~~~~~~~~~~~p~~~ 432 (523)
.+...++..-...|. .+-..+.+.+.....|..+
T Consensus 242 etL~Nliv~a~~~Gkd~~~~~r~l~QLk~~~p~h~ 276 (299)
T KOG3081|consen 242 ETLANLIVLALHLGKDAEVTERNLSQLKLSHPEHP 276 (299)
T ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCcch
Confidence 555555554444443 4555666777777777544
No 116
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.66 E-value=1.9e-06 Score=83.15 Aligned_cols=223 Identities=13% Similarity=0.084 Sum_probs=169.2
Q ss_pred CCCchHHHHHHhhhhhhcCChHHHHHHHHhcCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcCCCHHHHH
Q 038200 250 LKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFI 329 (523)
Q Consensus 250 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~ 329 (523)
.+|-...-..+.+.+...|-...|..+|++. ..|...|.+|+..|+..+|..+..+..++ +|+...|.
T Consensus 394 lpp~Wq~q~~laell~slGitksAl~I~Erl-----emw~~vi~CY~~lg~~~kaeei~~q~lek-------~~d~~lyc 461 (777)
T KOG1128|consen 394 LPPIWQLQRLLAELLLSLGITKSALVIFERL-----EMWDPVILCYLLLGQHGKAEEINRQELEK-------DPDPRLYC 461 (777)
T ss_pred CCCcchHHHHHHHHHHHcchHHHHHHHHHhH-----HHHHHHHHHHHHhcccchHHHHHHHHhcC-------CCcchhHH
Confidence 4555667778889999999999999999975 46778899999999999999999988883 59999999
Q ss_pred HHHHHHhhcCcHHHHHHHHHHhhHhcCCCCChHHHHHHHHHHHcCCChHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHH
Q 038200 330 GVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCR 409 (523)
Q Consensus 330 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 409 (523)
.+.+..-...-+++|.++.+....+ .-..+.....+.++++++.+.|+.-.+. .+.-..+|..+..+..
T Consensus 462 ~LGDv~~d~s~yEkawElsn~~sar--------A~r~~~~~~~~~~~fs~~~~hle~sl~~---nplq~~~wf~~G~~AL 530 (777)
T KOG1128|consen 462 LLGDVLHDPSLYEKAWELSNYISAR--------AQRSLALLILSNKDFSEADKHLERSLEI---NPLQLGTWFGLGCAAL 530 (777)
T ss_pred HhhhhccChHHHHHHHHHhhhhhHH--------HHHhhccccccchhHHHHHHHHHHHhhc---CccchhHHHhccHHHH
Confidence 9988888877888888888876552 2222333344578999999999887753 2334667888887888
Q ss_pred hcCCHHHHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCCceeEEEeCCeEEEEecCC-CCc
Q 038200 410 FQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLKEVVEKLKVGH-FWR 488 (523)
Q Consensus 410 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 488 (523)
+.++++.|...|.....++|++...|+++..+|.+.|+..+|...+++..+.+.++ ..+ -.|. -.+..+ +..
T Consensus 531 qlek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~-w~i----WENy--mlvsvdvge~ 603 (777)
T KOG1128|consen 531 QLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQH-WQI----WENY--MLVSVDVGEF 603 (777)
T ss_pred HHhhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCC-Cee----eech--hhhhhhcccH
Confidence 88999999999999999999999999999999999999999999999888776322 211 1111 122233 566
Q ss_pred hHHHHHHHHHHhcc
Q 038200 489 GGMKEEVNKMMECR 502 (523)
Q Consensus 489 ~~~~~~l~~~~~~~ 502 (523)
+++++...+++...
T Consensus 604 eda~~A~~rll~~~ 617 (777)
T KOG1128|consen 604 EDAIKAYHRLLDLR 617 (777)
T ss_pred HHHHHHHHHHHHhh
Confidence 77777666655543
No 117
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.66 E-value=3.5e-05 Score=74.71 Aligned_cols=211 Identities=12% Similarity=0.153 Sum_probs=169.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHH
Q 038200 157 NSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFN 236 (523)
Q Consensus 157 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~ 236 (523)
..+...+...|-...|..+|++. ..|..+|.+|...|+..+|..+..+..+ -+||+..|..+.+......-++
T Consensus 402 ~~laell~slGitksAl~I~Erl-----emw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGDv~~d~s~yE 474 (777)
T KOG1128|consen 402 RLLAELLLSLGITKSALVIFERL-----EMWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGDVLHDPSLYE 474 (777)
T ss_pred HHHHHHHHHcchHHHHHHHHHhH-----HHHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhhhccChHHHH
Confidence 34556677788888888888875 5688889999999999999999888887 3789999999998888888888
Q ss_pred HHHHHHHHHHHcCCCCchHHHHHHhhhhhhcCChHHHHHHHHhcCCC---ChHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 038200 237 EGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADR---NLVCWNAMILGHCIHGKPEEGIKLFTALVN 313 (523)
Q Consensus 237 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 313 (523)
+|.++.+..... ....+.....+.++++++.+.|+.-.+- -..+|-.+..+..+.+++..|.+.|.....
T Consensus 475 kawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvt 547 (777)
T KOG1128|consen 475 KAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVT 547 (777)
T ss_pred HHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHHHhh
Confidence 888887765332 2333444445578999999999876543 456888888888999999999999999888
Q ss_pred CCCCCCCcCCC-HHHHHHHHHHHhhcCcHHHHHHHHHHhhHhcCCCCChHHHHHHHHHHHcCCChHHHHHHHHhCCCC
Q 038200 314 GTVAGGSISPD-EITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPED 390 (523)
Q Consensus 314 ~~~~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 390 (523)
..|| ...|+.+-.+|.+.++..+|...+.+..+. + .-+...|...+....+.|.+++|++.+.++...
T Consensus 548 -------L~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKc-n-~~~w~iWENymlvsvdvge~eda~~A~~rll~~ 616 (777)
T KOG1128|consen 548 -------LEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKC-N-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDL 616 (777)
T ss_pred -------cCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhc-C-CCCCeeeechhhhhhhcccHHHHHHHHHHHHHh
Confidence 4576 568999999999999999999999999985 4 445667777788888999999999999887654
No 118
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.65 E-value=8e-06 Score=84.34 Aligned_cols=204 Identities=14% Similarity=0.130 Sum_probs=166.0
Q ss_pred HHHHHHhCCCCCchHHHHHHHHHHccCChHHHHHHHhhcCCC--------CcchHHHHHHHHHhcCCHHHHHHHHhcCCC
Q 038200 110 HGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPR--------DLISWNSIVSGHVRSGDMSAAHELFDIMPE 181 (523)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 181 (523)
|++.+... +-+...|-..|......++++.|++++++..+. -...|.++++.-..-|.-+...++|+++.+
T Consensus 1447 ferlvrss-PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcq 1525 (1710)
T KOG1070|consen 1447 FERLVRSS-PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQ 1525 (1710)
T ss_pred HHHHHhcC-CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHH
Confidence 44444443 225677888999999999999999999988632 345788888888888888999999999876
Q ss_pred -CC-hhHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHcCCC-CchHHHH
Q 038200 182 -RN-VVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLK-PNIILDT 258 (523)
Q Consensus 182 -~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~ 258 (523)
-| ...|..|...|.+.+.+++|.++|+.|.+. +.-....|...+..+.++++-+.|..++.++++.-.. -......
T Consensus 1526 ycd~~~V~~~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~Is 1604 (1710)
T KOG1070|consen 1526 YCDAYTVHLKLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFIS 1604 (1710)
T ss_pred hcchHHHHHHHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHH
Confidence 23 456888999999999999999999999886 3456678889999999999999999999998885322 1355666
Q ss_pred HHhhhhhhcCChHHHHHHHHhcCCC---ChHHHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 038200 259 ALIDLYSKCQKVEVAQRVFDSMADR---NLVCWNAMILGHCIHGKPEEGIKLFTALVNGT 315 (523)
Q Consensus 259 ~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 315 (523)
..+..-.+.|+.+.+..+|+..... -...|+..|..-.++|+.+.+..+|++.+..+
T Consensus 1605 kfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~ 1664 (1710)
T KOG1070|consen 1605 KFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELK 1664 (1710)
T ss_pred HHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcC
Confidence 6777788899999999999988652 45789999999999999999999999999987
No 119
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.64 E-value=0.00066 Score=67.76 Aligned_cols=416 Identities=12% Similarity=0.058 Sum_probs=224.0
Q ss_pred ccCCchhHHHHhccCCC--CCcccHHHHHHH--HHhCCCchHHHHHHHHHHHCCCCCCcccHHHHHHHHHccCCchHHHH
Q 038200 33 DFGSPDYTVLVFKCINN--PGTFCVNAVIKA--YSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGM 108 (523)
Q Consensus 33 ~~g~~~~A~~~~~~~~~--~~~~~~~~ll~~--~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~ 108 (523)
..+++..|.+....+.+ ||. .|...+.+ +.+.|..++|..+++.....+. .|..|...+-.+|...++.++|..
T Consensus 21 d~~qfkkal~~~~kllkk~Pn~-~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~-~D~~tLq~l~~~y~d~~~~d~~~~ 98 (932)
T KOG2053|consen 21 DSSQFKKALAKLGKLLKKHPNA-LYAKVLKALSLFRLGKGDEALKLLEALYGLKG-TDDLTLQFLQNVYRDLGKLDEAVH 98 (932)
T ss_pred hhHHHHHHHHHHHHHHHHCCCc-HHHHHHHHHHHHHhcCchhHHHHHhhhccCCC-CchHHHHHHHHHHHHHhhhhHHHH
Confidence 45677888777776542 333 34455554 4567888888877777766543 377788888888888888888888
Q ss_pred HHHHHHHhCCCCCchHHHHHHHHHHccCChHH----HHHHHhhcCCCCcchHHHHHHHHHhc-C---------CHHHHHH
Q 038200 109 CHGLALKNGVDFELPVMNSLINMYGCFGAMDC----ARNMFVQMSPRDLISWNSIVSGHVRS-G---------DMSAAHE 174 (523)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~----A~~~~~~~~~~~~~~~~~ll~~~~~~-~---------~~~~a~~ 174 (523)
+|++..+. .|+......+..+|.|.+.+.+ |.+++...++.--..| ++++.+... . -..-|.+
T Consensus 99 ~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfW-sV~Slilqs~~~~~~~~~~i~l~LA~~ 175 (932)
T KOG2053|consen 99 LYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFW-SVISLILQSIFSENELLDPILLALAEK 175 (932)
T ss_pred HHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHH-HHHHHHHHhccCCcccccchhHHHHHH
Confidence 88888765 4457777777777887776644 4555554433333333 333333321 1 1223455
Q ss_pred HHhcCCCCC--hhH---HHHHHHHHHhcCCchHHHHHHH-HHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHc
Q 038200 175 LFDIMPERN--VVS---WNIMISGYSKSGNPGCSLKLFR-EMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRT 248 (523)
Q Consensus 175 ~~~~~~~~~--~~~---~~~li~~~~~~~~~~~a~~~~~-~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 248 (523)
.++.+.+.. ..+ ...-...+...|++++|++++. ...+.-..-+...-+.-+..+...+++.+..++-.++...
T Consensus 176 m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k 255 (932)
T KOG2053|consen 176 MVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEK 255 (932)
T ss_pred HHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHh
Confidence 555554422 111 1111223445677788877773 3333322334444455666667777777777777777776
Q ss_pred CCCCchHH-----HHHHhhh--------hhhcCChHHHHHHHHhcCCC-ChHHHHHHHHHHH---hcCChHHHHHHHHHH
Q 038200 249 SLKPNIIL-----DTALIDL--------YSKCQKVEVAQRVFDSMADR-NLVCWNAMILGHC---IHGKPEEGIKLFTAL 311 (523)
Q Consensus 249 ~~~~~~~~-----~~~l~~~--------~~~~~~~~~a~~~~~~~~~~-~~~~~~~li~~~~---~~g~~~~a~~~~~~m 311 (523)
|.. |-.+ +..|-.. +...+..+...+...+.... ....|-+-+.++. .-|+.+++.-.|-+-
T Consensus 256 ~~D-dy~~~~~sv~klLe~~~~~~a~~~~s~~~~l~~~~ek~~~~i~~~~Rgp~LA~lel~kr~~~~gd~ee~~~~y~~k 334 (932)
T KOG2053|consen 256 GND-DYKIYTDSVFKLLELLNKEPAEAAHSLSKSLDECIEKAQKNIGSKSRGPYLARLELDKRYKLIGDSEEMLSYYFKK 334 (932)
T ss_pred CCc-chHHHHHHHHHHHHhcccccchhhhhhhhhHHHHHHHHHHhhcccccCcHHHHHHHHHHhcccCChHHHHHHHHHH
Confidence 633 2111 1111111 11112223333333322221 1122333333322 335555554443322
Q ss_pred HhCCCCCCCcCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhHhcCCCCChH-------HHHHHHHHHHcCCCh-----HH
Q 038200 312 VNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFA-------HYWCMANLYAGAELT-----EE 379 (523)
Q Consensus 312 ~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-------~~~~l~~~~~~~g~~-----~~ 379 (523)
.. -.| .+..=+..|...=..++-..++...... .++.. .+.+.+....-.|.+ +.
T Consensus 335 fg-------~kp---cc~~Dl~~yl~~l~~~q~~~l~~~l~~~---~~~~s~~~k~l~~h~c~l~~~rl~G~~~~l~ad~ 401 (932)
T KOG2053|consen 335 FG-------DKP---CCAIDLNHYLGHLNIDQLKSLMSKLVLA---DDDSSGDEKVLQQHLCVLLLLRLLGLYEKLPADS 401 (932)
T ss_pred hC-------CCc---HhHhhHHHhhccCCHHHHHHHHHHhhcc---CCcchhhHHHHHHHHHHHHHHHHhhccccCChHH
Confidence 11 122 2222223333333444455555555432 22221 122233333333322 22
Q ss_pred HHHHH-------HhCCCCCCCCCch---------HHHHHHHHHHHHhcCC---HHHHHHHHHHHhhcCCCChhhHHHHHH
Q 038200 380 AEEIL-------RKMPEDNDNMSFE---------SIMWVSLLSLCRFQGA---VAMVERLAKSFVDMDPQDFSRYQFLLN 440 (523)
Q Consensus 380 A~~~~-------~~~~~~~~~~~~~---------~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~p~~~~~~~~l~~ 440 (523)
-..++ +.-.+.+.+.-|. ..+.+.++..|.+.++ +-+|+-+++......|.++.+-..|++
T Consensus 402 i~a~~~kl~~~ye~gls~~K~ll~TE~~~g~~~llLav~~Lid~~rktnd~~~l~eaI~LLE~glt~s~hnf~~KLlLir 481 (932)
T KOG2053|consen 402 ILAYVRKLKLTYEKGLSLSKDLLPTEYSFGDELLLLAVNHLIDLWRKTNDLTDLFEAITLLENGLTKSPHNFQTKLLLIR 481 (932)
T ss_pred HHHHHHHHHHHHhccccccccccccccccHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhcCCccHHHHHHHHH
Confidence 22222 2222222223333 2355677788888887 456777788888899999999999999
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCccCC
Q 038200 441 VYAVAGQWEDVARVRELMKKRRMGRMP 467 (523)
Q Consensus 441 ~~~~~g~~~~A~~~~~~m~~~~~~~~~ 467 (523)
+|.-.|-+..|.++|+.+.=++|..+.
T Consensus 482 iY~~lGa~p~a~~~y~tLdIK~IQ~DT 508 (932)
T KOG2053|consen 482 IYSYLGAFPDAYELYKTLDIKNIQTDT 508 (932)
T ss_pred HHHHhcCChhHHHHHHhcchHHhhhcc
Confidence 999999999999999998777766554
No 120
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.64 E-value=4.5e-06 Score=70.93 Aligned_cols=155 Identities=14% Similarity=0.041 Sum_probs=76.3
Q ss_pred HHHhhhhhhcCChHHHHHHHHhcCC---CChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcCCCHHHHHHHHHH
Q 038200 258 TALIDLYSKCQKVEVAQRVFDSMAD---RNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICA 334 (523)
Q Consensus 258 ~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~ll~~ 334 (523)
..+-..+...|+-+....+...... .+.......+....+.|++..|...|++..... ++|...++.+.-+
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~------p~d~~~~~~lgaa 143 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA------PTDWEAWNLLGAA 143 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC------CCChhhhhHHHHH
Confidence 3344444455555555554444322 233333445555555555555555555555532 3445555555555
Q ss_pred HhhcCcHHHHHHHHHHhhHhcCCCCChHHHHHHHHHHHcCCChHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHhcCCH
Q 038200 335 CVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAV 414 (523)
Q Consensus 335 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 414 (523)
|.+.|+++.|..-|.+..+. ..-++..++.|...|.-.|+++.|..++...... -.-|..+-..+.......|++
T Consensus 144 ldq~Gr~~~Ar~ay~qAl~L--~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~---~~ad~~v~~NLAl~~~~~g~~ 218 (257)
T COG5010 144 LDQLGRFDEARRAYRQALEL--APNEPSIANNLGMSLLLRGDLEDAETLLLPAYLS---PAADSRVRQNLALVVGLQGDF 218 (257)
T ss_pred HHHccChhHHHHHHHHHHHh--ccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhC---CCCchHHHHHHHHHHhhcCCh
Confidence 55555555555555555552 2223444455555555555555555555554422 122344444444455555555
Q ss_pred HHHHHHHHH
Q 038200 415 AMVERLAKS 423 (523)
Q Consensus 415 ~~a~~~~~~ 423 (523)
+.|+.+..+
T Consensus 219 ~~A~~i~~~ 227 (257)
T COG5010 219 REAEDIAVQ 227 (257)
T ss_pred HHHHhhccc
Confidence 555555443
No 121
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.60 E-value=6.4e-06 Score=70.24 Aligned_cols=156 Identities=15% Similarity=0.125 Sum_probs=110.7
Q ss_pred hhhhhhcCChHHHHHHHHhcCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcCCCHHHHHHHHHHHhhcCc
Q 038200 261 IDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAEL 340 (523)
Q Consensus 261 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~ll~~~~~~~~ 340 (523)
+..|...|+++.+....+.+..+. ..+...++.+++...+++..... +.|...|..+...|...|+
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~~~--------~~~~~~~~~~~~i~~l~~~L~~~------P~~~~~w~~Lg~~~~~~g~ 88 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLADPL--------HQFASQQTPEAQLQALQDKIRAN------PQNSEQWALLGEYYLWRND 88 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhCcc--------ccccCchhHHHHHHHHHHHHHHC------CCCHHHHHHHHHHHHHCCC
Confidence 345666777666544443322221 01223566778888888877754 4567788888888999999
Q ss_pred HHHHHHHHHHhhHhcCCCCChHHHHHHHHHH-HcCCC--hHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHhcCCHHHH
Q 038200 341 LTEGRKYFRQMIDFYKIKPNFAHYWCMANLY-AGAEL--TEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMV 417 (523)
Q Consensus 341 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~--~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 417 (523)
+++|...|++..+. .+.+...+..+..++ ...|+ .++|.+++++..+. .+.+...+..+...+...|++++|
T Consensus 89 ~~~A~~a~~~Al~l--~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~---dP~~~~al~~LA~~~~~~g~~~~A 163 (198)
T PRK10370 89 YDNALLAYRQALQL--RGENAELYAALATVLYYQAGQHMTPQTREMIDKALAL---DANEVTALMLLASDAFMQADYAQA 163 (198)
T ss_pred HHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHh---CCCChhHHHHHHHHHHHcCCHHHH
Confidence 99999999988873 344677788888764 66676 58999999998864 233566777777788899999999
Q ss_pred HHHHHHHhhcCCCChhhH
Q 038200 418 ERLAKSFVDMDPQDFSRY 435 (523)
Q Consensus 418 ~~~~~~~~~~~p~~~~~~ 435 (523)
...++++.+..|.+..-+
T Consensus 164 i~~~~~aL~l~~~~~~r~ 181 (198)
T PRK10370 164 IELWQKVLDLNSPRVNRT 181 (198)
T ss_pred HHHHHHHHhhCCCCccHH
Confidence 999999999888655433
No 122
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.60 E-value=3.4e-06 Score=75.00 Aligned_cols=167 Identities=10% Similarity=-0.011 Sum_probs=101.2
Q ss_pred hHHHHHHhhhhhhcCChHHHHHHHHhcCC--CC-h---HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcCCCH--
Q 038200 254 IILDTALIDLYSKCQKVEVAQRVFDSMAD--RN-L---VCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDE-- 325 (523)
Q Consensus 254 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~-~---~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~p~~-- 325 (523)
...+..++..+...|+++.|...|+++.. |+ . .++..+..++...|++++|...++++.+.. |+.
T Consensus 33 ~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~-------p~~~~ 105 (235)
T TIGR03302 33 AEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLH-------PNHPD 105 (235)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC-------cCCCc
Confidence 34444455555555666666666655433 11 1 244555566666666666666666666533 321
Q ss_pred --HHHHHHHHHHhhc--------CcHHHHHHHHHHhhHhcCCCCChHH-----------------HHHHHHHHHcCCChH
Q 038200 326 --ITFIGVICACVRA--------ELLTEGRKYFRQMIDFYKIKPNFAH-----------------YWCMANLYAGAELTE 378 (523)
Q Consensus 326 --~~~~~ll~~~~~~--------~~~~~a~~~~~~~~~~~~~~~~~~~-----------------~~~l~~~~~~~g~~~ 378 (523)
.++..+..++... |+.+.|.+.++.+.+. .+-+... ...+...|.+.|+++
T Consensus 106 ~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~ 183 (235)
T TIGR03302 106 ADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYV 183 (235)
T ss_pred hHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChH
Confidence 1233333333332 5666677777666653 1111111 124566788999999
Q ss_pred HHHHHHHhCCCCCCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCC
Q 038200 379 EAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDP 429 (523)
Q Consensus 379 ~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p 429 (523)
+|...+++..+...+.+.....+..+..++...|++++|..+++.+....|
T Consensus 184 ~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 184 AAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred HHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 999999998864322233456788888999999999999999988876555
No 123
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.59 E-value=7.2e-06 Score=82.94 Aligned_cols=171 Identities=11% Similarity=0.061 Sum_probs=130.5
Q ss_pred ChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcCCC-HHHHHHHHHHHhhcCcHHHHHHHHHHhhHhcCCCCChH
Q 038200 284 NLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPD-EITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFA 362 (523)
Q Consensus 284 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 362 (523)
++..+-.|.....+.|++++|..+|+...+ ..|+ ......+..++.+.+++++|+..+++... .-+-+..
T Consensus 85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~-------~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~--~~p~~~~ 155 (694)
T PRK15179 85 TELFQVLVARALEAAHRSDEGLAVWRGIHQ-------RFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFS--GGSSSAR 155 (694)
T ss_pred cHHHHHHHHHHHHHcCCcHHHHHHHHHHHh-------hCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhh--cCCCCHH
Confidence 577888889999999999999999999999 5576 45677788889999999999999999987 4445677
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhhHHHHHHHH
Q 038200 363 HYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVY 442 (523)
Q Consensus 363 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 442 (523)
....+..++.+.|++++|.++|+++... .+-+...+..+..++...|+.++|...|+++.+...+-...|+.++
T Consensus 156 ~~~~~a~~l~~~g~~~~A~~~y~~~~~~---~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~~~--- 229 (694)
T PRK15179 156 EILLEAKSWDEIGQSEQADACFERLSRQ---HPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTRRL--- 229 (694)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHhc---CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHHHH---
Confidence 7788889999999999999999999853 2334778888888999999999999999999986554444554443
Q ss_pred HhcCChhHHHHHHHHHHhCCCccCCceeEE
Q 038200 443 AVAGQWEDVARVRELMKKRRMGRMPGCRLV 472 (523)
Q Consensus 443 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ 472 (523)
++...-...++++.-.+.......+++
T Consensus 230 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (694)
T PRK15179 230 ---VDLNADLAALRRLGVEGDGRDVPVSIL 256 (694)
T ss_pred ---HHHHHHHHHHHHcCcccccCCCceeee
Confidence 333344556666654444444443333
No 124
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.58 E-value=2.6e-05 Score=79.79 Aligned_cols=53 Identities=13% Similarity=0.107 Sum_probs=42.8
Q ss_pred chHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChhH
Q 038200 396 FESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWED 450 (523)
Q Consensus 396 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 450 (523)
--..++..+...|....+++++..+++.+++.+|.|..+...++..|. +.|..
T Consensus 221 ~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~--~kY~~ 273 (906)
T PRK14720 221 RLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYK--EKYKD 273 (906)
T ss_pred hhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH--HHccC
Confidence 334566666777888899999999999999999998888889998887 44444
No 125
>PF12854 PPR_1: PPR repeat
Probab=98.58 E-value=1.1e-07 Score=54.48 Aligned_cols=32 Identities=25% Similarity=0.389 Sum_probs=21.5
Q ss_pred CCCCChHHHHHHHHHHHcCCChHHHHHHHHhC
Q 038200 356 KIKPNFAHYWCMANLYAGAELTEEAEEILRKM 387 (523)
Q Consensus 356 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 387 (523)
|+.||..+|+.||++|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 56666666666666666666666666666665
No 126
>PF12854 PPR_1: PPR repeat
Probab=98.57 E-value=9e-08 Score=54.80 Aligned_cols=32 Identities=31% Similarity=0.449 Sum_probs=18.2
Q ss_pred CCCCCchHHHHHHHHHHccCChHHHHHHHhhc
Q 038200 117 GVDFELPVMNSLINMYGCFGAMDCARNMFVQM 148 (523)
Q Consensus 117 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 148 (523)
|+.||..+||+||++|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 45555555555555555555555555555555
No 127
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.55 E-value=8e-06 Score=69.47 Aligned_cols=161 Identities=12% Similarity=0.073 Sum_probs=110.5
Q ss_pred ChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhHhcCCCCChHH
Q 038200 284 NLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAH 363 (523)
Q Consensus 284 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 363 (523)
|... ..+-..+...|+-+....+........ +.|.......+....+.|++..|...+++... .-++|...
T Consensus 66 d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~------~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~--l~p~d~~~ 136 (257)
T COG5010 66 DLSI-AKLATALYLRGDADSSLAVLQKSAIAY------PKDRELLAAQGKNQIRNGNFGEAVSVLRKAAR--LAPTDWEA 136 (257)
T ss_pred hHHH-HHHHHHHHhcccccchHHHHhhhhccC------cccHHHHHHHHHHHHHhcchHHHHHHHHHHhc--cCCCChhh
Confidence 3444 555566667777777777666654432 23444555566677777777777777777776 56667777
Q ss_pred HHHHHHHHHcCCChHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhhHHHHHHHHH
Q 038200 364 YWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYA 443 (523)
Q Consensus 364 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 443 (523)
|+.+.-+|.+.|++++|..-|.+..+- ...+....+.+...+.-.|+.+.|..++.......+.+..+-..|..+..
T Consensus 137 ~~~lgaaldq~Gr~~~Ar~ay~qAl~L---~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~ 213 (257)
T COG5010 137 WNLLGAALDQLGRFDEARRAYRQALEL---APNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVG 213 (257)
T ss_pred hhHHHHHHHHccChhHHHHHHHHHHHh---ccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHh
Confidence 777777777777777777777777653 23345666777777777777777777777777766667777777777777
Q ss_pred hcCChhHHHHHHH
Q 038200 444 VAGQWEDVARVRE 456 (523)
Q Consensus 444 ~~g~~~~A~~~~~ 456 (523)
..|++++|.++..
T Consensus 214 ~~g~~~~A~~i~~ 226 (257)
T COG5010 214 LQGDFREAEDIAV 226 (257)
T ss_pred hcCChHHHHhhcc
Confidence 7777777776644
No 128
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.54 E-value=2.9e-05 Score=78.64 Aligned_cols=144 Identities=8% Similarity=0.015 Sum_probs=119.9
Q ss_pred CCCchHHHHHHhhhhhhcCChHHHHHHHHhcCC--C-ChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcCCC-H
Q 038200 250 LKPNIILDTALIDLYSKCQKVEVAQRVFDSMAD--R-NLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPD-E 325 (523)
Q Consensus 250 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~p~-~ 325 (523)
.+.+...+..|..+....|.+++|..+++.+.+ | +...+..++..+.+.+++++|+..+++..... |+ .
T Consensus 82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~-------p~~~ 154 (694)
T PRK15179 82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGG-------SSSA 154 (694)
T ss_pred ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC-------CCCH
Confidence 455688999999999999999999999999865 4 55678888999999999999999999999954 66 4
Q ss_pred HHHHHHHHHHhhcCcHHHHHHHHHHhhHhcCCCCChHHHHHHHHHHHcCCChHHHHHHHHhCCCCCCCCCchHHHHHHHH
Q 038200 326 ITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLL 405 (523)
Q Consensus 326 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~ 405 (523)
.....+..++.+.|++++|..+|+++.. ..+-+...+..+..++...|+.++|...|++..+. ..+....|+.++
T Consensus 155 ~~~~~~a~~l~~~g~~~~A~~~y~~~~~--~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~---~~~~~~~~~~~~ 229 (694)
T PRK15179 155 REILLEAKSWDEIGQSEQADACFERLSR--QHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDA---IGDGARKLTRRL 229 (694)
T ss_pred HHHHHHHHHHHHhcchHHHHHHHHHHHh--cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---hCcchHHHHHHH
Confidence 5666777788999999999999999997 34445889999999999999999999999999864 344444444443
No 129
>PLN02789 farnesyltranstransferase
Probab=98.54 E-value=9.7e-05 Score=67.83 Aligned_cols=211 Identities=11% Similarity=0.027 Sum_probs=142.5
Q ss_pred HHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhccc-cHHHHHHHHHHHHHcCCCCchHHHHHHhhh
Q 038200 186 SWNIMISGYSKSGNPGCSLKLFREMMKSGFRGND-KTMASVLTACGRSA-RFNEGRSVHGYTVRTSLKPNIILDTALIDL 263 (523)
Q Consensus 186 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~-~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 263 (523)
++..+-..+...+..++|+.++.++++. .|+. ..|+....++...| ++++++..++.+.+... .+..+|+....+
T Consensus 39 a~~~~ra~l~~~e~serAL~lt~~aI~l--nP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~np-knyqaW~~R~~~ 115 (320)
T PLN02789 39 AMDYFRAVYASDERSPRALDLTADVIRL--NPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNP-KNYQIWHHRRWL 115 (320)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCC-cchHHhHHHHHH
Confidence 3444445566678889999999988885 4443 45555555566666 57889999988888753 355566655544
Q ss_pred hhhcCC--hHHHHHHHHhcCC---CChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcCCCHHHHHHHHHHHhhc
Q 038200 264 YSKCQK--VEVAQRVFDSMAD---RNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRA 338 (523)
Q Consensus 264 ~~~~~~--~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~ll~~~~~~ 338 (523)
+.+.|+ .++++.+++++.+ .|..+|+....++...|+++++++.+.++++.. .-|...|+.....+.+.
T Consensus 116 l~~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d------~~N~sAW~~R~~vl~~~ 189 (320)
T PLN02789 116 AEKLGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEED------VRNNSAWNQRYFVITRS 189 (320)
T ss_pred HHHcCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHC------CCchhHHHHHHHHHHhc
Confidence 555555 2667778877754 567888888888889999999999999999865 33455666555554443
Q ss_pred ---Cc----HHHHHHHHHHhhHhcCCCCChHHHHHHHHHHHcC----CChHHHHHHHHhCCCCCCCCCchHHHHHHHHHH
Q 038200 339 ---EL----LTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGA----ELTEEAEEILRKMPEDNDNMSFESIMWVSLLSL 407 (523)
Q Consensus 339 ---~~----~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~ 407 (523)
|. .+....+..++.. ..+-|...|+.+...+... ++..+|.+.+.+.... -......+..|+..
T Consensus 190 ~~l~~~~~~~e~el~y~~~aI~--~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~---~~~s~~al~~l~d~ 264 (320)
T PLN02789 190 PLLGGLEAMRDSELKYTIDAIL--ANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSK---DSNHVFALSDLLDL 264 (320)
T ss_pred cccccccccHHHHHHHHHHHHH--hCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcc---cCCcHHHHHHHHHH
Confidence 22 3467777767766 3455678888888888773 4456788888887642 13345566666666
Q ss_pred HHh
Q 038200 408 CRF 410 (523)
Q Consensus 408 ~~~ 410 (523)
|..
T Consensus 265 ~~~ 267 (320)
T PLN02789 265 LCE 267 (320)
T ss_pred HHh
Confidence 654
No 130
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.54 E-value=5.2e-05 Score=64.60 Aligned_cols=244 Identities=14% Similarity=0.066 Sum_probs=159.5
Q ss_pred HHHhcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHcCCCCchHHHHHHhhhhhhcCChHH
Q 038200 193 GYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEV 272 (523)
Q Consensus 193 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 272 (523)
-+.-.|++..++..-...... +-+...-..+.++|...|.+.... ..+.... .|.......+......-++.++
T Consensus 17 n~fY~Gnyq~~ine~~~~~~~--~~~~e~d~y~~raylAlg~~~~~~---~eI~~~~-~~~lqAvr~~a~~~~~e~~~~~ 90 (299)
T KOG3081|consen 17 NYFYLGNYQQCINEAEKFSSS--KTDVELDVYMYRAYLALGQYQIVI---SEIKEGK-ATPLQAVRLLAEYLELESNKKS 90 (299)
T ss_pred HHHHhhHHHHHHHHHHhhccc--cchhHHHHHHHHHHHHcccccccc---ccccccc-CChHHHHHHHHHHhhCcchhHH
Confidence 344457777766554443332 133444445556666666654322 2222222 3334444444444444444444
Q ss_pred HHHH-HHhcCCC----ChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcCCCHHHHHHHHHHHhhcCcHHHHHHH
Q 038200 273 AQRV-FDSMADR----NLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKY 347 (523)
Q Consensus 273 a~~~-~~~~~~~----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~ 347 (523)
-..- .+.+..+ +......-...|+..|++++|++...... ..+ ....=...+.+..+++-|.+.
T Consensus 91 ~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~---------~lE--~~Al~VqI~lk~~r~d~A~~~ 159 (299)
T KOG3081|consen 91 ILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE---------NLE--AAALNVQILLKMHRFDLAEKE 159 (299)
T ss_pred HHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc---------hHH--HHHHHHHHHHHHHHHHHHHHH
Confidence 3333 3333322 22233333456889999999999987621 122 222223455677899999999
Q ss_pred HHHhhHhcCCCCChHHHHHHHHHHH----cCCChHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 038200 348 FRQMIDFYKIKPNFAHYWCMANLYA----GAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKS 423 (523)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~l~~~~~----~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 423 (523)
+++|.+- .+..+.+.|..++. ..+...+|.-+|+++.++ ..|+..+.+....++...|++++|+.+++.
T Consensus 160 lk~mq~i----ded~tLtQLA~awv~la~ggek~qdAfyifeE~s~k---~~~T~~llnG~Av~~l~~~~~eeAe~lL~e 232 (299)
T KOG3081|consen 160 LKKMQQI----DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK---TPPTPLLLNGQAVCHLQLGRYEEAESLLEE 232 (299)
T ss_pred HHHHHcc----chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc---cCCChHHHccHHHHHHHhcCHHHHHHHHHH
Confidence 9999873 24556666666654 456789999999999975 789999999999999999999999999999
Q ss_pred HhhcCCCChhhHHHHHHHHHhcCChhHHH-HHHHHHHh
Q 038200 424 FVDMDPQDFSRYQFLLNVYAVAGQWEDVA-RVRELMKK 460 (523)
Q Consensus 424 ~~~~~p~~~~~~~~l~~~~~~~g~~~~A~-~~~~~m~~ 460 (523)
++..++++|.+...++.+-...|...++. +.+.+++.
T Consensus 233 aL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~ 270 (299)
T KOG3081|consen 233 ALDKDAKDPETLANLIVLALHLGKDAEVTERNLSQLKL 270 (299)
T ss_pred HHhccCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHh
Confidence 99999999999999999999999887754 45666654
No 131
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.50 E-value=0.0001 Score=68.50 Aligned_cols=118 Identities=19% Similarity=0.145 Sum_probs=84.8
Q ss_pred HhhcCcHHHHHHHHHHhhHhcCCCCChHHHHHHHHHHHcCCChHHHHHHHHhCCCCCCCCCch-HHHHHHHHHHHHhcCC
Q 038200 335 CVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFE-SIMWVSLLSLCRFQGA 413 (523)
Q Consensus 335 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~ 413 (523)
+...|+++.|+..++.+.. ..+-|+.........+.+.++.++|.+.++++... .|+ ......+..++...|+
T Consensus 316 ~~~~~~~d~A~~~l~~L~~--~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l----~P~~~~l~~~~a~all~~g~ 389 (484)
T COG4783 316 TYLAGQYDEALKLLQPLIA--AQPDNPYYLELAGDILLEANKAKEAIERLKKALAL----DPNSPLLQLNLAQALLKGGK 389 (484)
T ss_pred HHHhcccchHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc----CCCccHHHHHHHHHHHhcCC
Confidence 3455777778888777776 45556666667777777888888888888877753 454 5556666677777888
Q ss_pred HHHHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHH
Q 038200 414 VAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELM 458 (523)
Q Consensus 414 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 458 (523)
..+|.++++.....+|+++..|..|+.+|...|+..++....-+.
T Consensus 390 ~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~ 434 (484)
T COG4783 390 PQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEG 434 (484)
T ss_pred hHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHH
Confidence 888888888877777877778888887777777766666655544
No 132
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.50 E-value=2.9e-06 Score=79.25 Aligned_cols=126 Identities=13% Similarity=0.141 Sum_probs=105.8
Q ss_pred HHHHHHHHHHHhhcCcHHHHHHHHHHhhHhcCCCCChHHHHHHHHHHHcCCChHHHHHHHHhCCCCCCCCCchHHHHHHH
Q 038200 325 EITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSL 404 (523)
Q Consensus 325 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l 404 (523)
......|+..+...++++.|..+|+++.+. .|+ ....+++.+...++-.+|.+++++.... .+.+...+...
T Consensus 169 NyLv~~Ll~~l~~t~~~~~ai~lle~L~~~---~pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~---~p~d~~LL~~Q 240 (395)
T PF09295_consen 169 NYLVDTLLKYLSLTQRYDEAIELLEKLRER---DPE--VAVLLARVYLLMNEEVEAIRLLNEALKE---NPQDSELLNLQ 240 (395)
T ss_pred hHHHHHHHHHHhhcccHHHHHHHHHHHHhc---CCc--HHHHHHHHHHhcCcHHHHHHHHHHHHHh---CCCCHHHHHHH
Confidence 344556677777889999999999999885 244 4556888888889999999999998853 34466666666
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHH
Q 038200 405 LSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELM 458 (523)
Q Consensus 405 ~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 458 (523)
...+...++++.|..+.+++.+..|++..+|..|+.+|.+.|++++|+..++.+
T Consensus 241 a~fLl~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~ 294 (395)
T PF09295_consen 241 AEFLLSKKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSC 294 (395)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence 777899999999999999999999999999999999999999999999988866
No 133
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.48 E-value=2.5e-06 Score=68.40 Aligned_cols=99 Identities=14% Similarity=0.197 Sum_probs=73.4
Q ss_pred ChHHHHHHHHHHHcCCChHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhhHHHHH
Q 038200 360 NFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLL 439 (523)
Q Consensus 360 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 439 (523)
+......+...+...|++++|.+.++.+... .+.+...+..+...+...|+++.|..+++++.+.+|+++..+..++
T Consensus 16 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la 92 (135)
T TIGR02552 16 QLEQIYALAYNLYQQGRYDEALKLFQLLAAY---DPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAA 92 (135)
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHH
Confidence 3445556677777788888888888777643 2335566666777777788888888888888888888788888888
Q ss_pred HHHHhcCChhHHHHHHHHHHhC
Q 038200 440 NVYAVAGQWEDVARVRELMKKR 461 (523)
Q Consensus 440 ~~~~~~g~~~~A~~~~~~m~~~ 461 (523)
.+|...|++++|...+++..+.
T Consensus 93 ~~~~~~g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 93 ECLLALGEPESALKALDLAIEI 114 (135)
T ss_pred HHHHHcCCHHHHHHHHHHHHHh
Confidence 8888888888888888777664
No 134
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.47 E-value=6.8e-05 Score=76.89 Aligned_cols=235 Identities=13% Similarity=0.108 Sum_probs=144.2
Q ss_pred chHHHHHHHHHHccCChHHHHHHHhhcC--CC-CcchHHHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHhcC
Q 038200 122 LPVMNSLINMYGCFGAMDCARNMFVQMS--PR-DLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSG 198 (523)
Q Consensus 122 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~ 198 (523)
...+..|+..|...+++++|.++.+... .| ....|-.+...+.+.++.+++..+ .++.......
T Consensus 31 ~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv-------------~~l~~~~~~~ 97 (906)
T PRK14720 31 FKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL-------------NLIDSFSQNL 97 (906)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh-------------hhhhhccccc
Confidence 3455556666666666666666655443 22 223333333344455554443322 3444444555
Q ss_pred CchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHcCCCCchHHHHHHhhhhhhcCChHHHHHHHH
Q 038200 199 NPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFD 278 (523)
Q Consensus 199 ~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 278 (523)
++.-+..+...|... .-+...+..+..+|.+.|+.+++..+|+++++.. +-++.+.|.+...|... ++++|..++.
T Consensus 98 ~~~~ve~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~ 173 (906)
T PRK14720 98 KWAIVEHICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLK 173 (906)
T ss_pred chhHHHHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHH
Confidence 565555555555553 3455577888888999999999999999999887 44788888888888888 8999988877
Q ss_pred hcCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhHhcCCC
Q 038200 279 SMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIK 358 (523)
Q Consensus 279 ~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 358 (523)
+.. ..|...+++..+.++|.++.... |+...+ -.++.+++....+..
T Consensus 174 KAV-----------~~~i~~kq~~~~~e~W~k~~~~~-------~~d~d~---------------f~~i~~ki~~~~~~~ 220 (906)
T PRK14720 174 KAI-----------YRFIKKKQYVGIEEIWSKLVHYN-------SDDFDF---------------FLRIERKVLGHREFT 220 (906)
T ss_pred HHH-----------HHHHhhhcchHHHHHHHHHHhcC-------cccchH---------------HHHHHHHHHhhhccc
Confidence 654 33677778899999999988853 543322 222233333322222
Q ss_pred CChHHHHHHHHHHHcCCChHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHH
Q 038200 359 PNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCR 409 (523)
Q Consensus 359 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 409 (523)
--..++..+...|...++++++..+++.+.+.. +-+......++..|.
T Consensus 221 ~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~---~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 221 RLVGLLEDLYEPYKALEDWDEVIYILKKILEHD---NKNNKAREELIRFYK 268 (906)
T ss_pred hhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcC---CcchhhHHHHHHHHH
Confidence 334556666677777788888888888887542 223444444554443
No 135
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.39 E-value=1.2e-05 Score=64.46 Aligned_cols=115 Identities=9% Similarity=-0.008 Sum_probs=89.0
Q ss_pred HHHHHHhCCCCCCCcCCC-HHHHHHHHHHHhhcCcHHHHHHHHHHhhHhcCCCCChHHHHHHHHHHHcCCChHHHHHHHH
Q 038200 307 LFTALVNGTVAGGSISPD-EITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILR 385 (523)
Q Consensus 307 ~~~~m~~~~~~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 385 (523)
.+++... ..|+ ......+...+...|++++|...|+.+.+. .+.+...+..+...+...|++++|..+++
T Consensus 5 ~~~~~l~-------~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~ 75 (135)
T TIGR02552 5 TLKDLLG-------LDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAY--DPYNSRYWLGLAACCQMLKEYEEAIDAYA 75 (135)
T ss_pred hHHHHHc-------CChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555 3354 345666777788889999999999998873 34577888888999999999999999999
Q ss_pred hCCCCCCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChh
Q 038200 386 KMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFS 433 (523)
Q Consensus 386 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 433 (523)
+.... .+.+...+..+...+...|+++.|...++.+.+.+|++..
T Consensus 76 ~~~~~---~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 120 (135)
T TIGR02552 76 LAAAL---DPDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPE 120 (135)
T ss_pred HHHhc---CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccch
Confidence 88753 2445667777777888999999999999999999997654
No 136
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.38 E-value=8.7e-05 Score=62.81 Aligned_cols=189 Identities=13% Similarity=0.144 Sum_probs=107.0
Q ss_pred ccccHHHHHHHHHHHHHc---C-CCCch-HHHHHHhhhhhhcCChHHHHHHHHhcCC--CCh-HHHHHHHHHHHhcCChH
Q 038200 231 RSARFNEGRSVHGYTVRT---S-LKPNI-ILDTALIDLYSKCQKVEVAQRVFDSMAD--RNL-VCWNAMILGHCIHGKPE 302 (523)
Q Consensus 231 ~~~~~~~a~~~~~~~~~~---~-~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~-~~~~~li~~~~~~g~~~ 302 (523)
...+.++..+++..+... | ..++. .+|..++-+...+|+.+.|...++.+.. |+. ..-..-..-+-..|+++
T Consensus 24 ~~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~ 103 (289)
T KOG3060|consen 24 TVRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYK 103 (289)
T ss_pred cccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchh
Confidence 344566666666665532 2 33332 3455555566666777777776666644 221 11111112234456777
Q ss_pred HHHHHHHHHHhCCCCCCCcCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhHhcCCCCChHHHHHHHHHHHcCCChHHHHH
Q 038200 303 EGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEE 382 (523)
Q Consensus 303 ~a~~~~~~m~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 382 (523)
+|+++++.+.... +.|..++..=+...-..|+.-+|++-+....+ .+..|...|.-|...|...|++++|.-
T Consensus 104 ~A~e~y~~lL~dd------pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~--~F~~D~EAW~eLaeiY~~~~~f~kA~f 175 (289)
T KOG3060|consen 104 EAIEYYESLLEDD------PTDTVIRKRKLAILKAQGKNLEAIKELNEYLD--KFMNDQEAWHELAEIYLSEGDFEKAAF 175 (289)
T ss_pred hHHHHHHHHhccC------cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHH--HhcCcHHHHHHHHHHHHhHhHHHHHHH
Confidence 7777777776654 33455555555555555666666666666666 456667777777777777777777777
Q ss_pred HHHhCCCCCCCCCc-hHHHHHHHHHHHHhcC---CHHHHHHHHHHHhhcCCCC
Q 038200 383 ILRKMPEDNDNMSF-ESIMWVSLLSLCRFQG---AVAMVERLAKSFVDMDPQD 431 (523)
Q Consensus 383 ~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~~p~~ 431 (523)
.+++++- +.| +...+..+...+...| +.+.+..+|.+++++.|.+
T Consensus 176 ClEE~ll----~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~ 224 (289)
T KOG3060|consen 176 CLEELLL----IQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPKN 224 (289)
T ss_pred HHHHHHH----cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHh
Confidence 7777653 233 3444444444433322 4566667777777766643
No 137
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.37 E-value=5.2e-06 Score=65.72 Aligned_cols=99 Identities=7% Similarity=-0.039 Sum_probs=86.2
Q ss_pred ChHHHHHHHHHHHcCCChHHHHHHHHhCCCCCCCCCc-hHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhhHHHH
Q 038200 360 NFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSF-ESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFL 438 (523)
Q Consensus 360 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 438 (523)
+......+...+...|++++|.++|+-... +.| +..-|..|..+|...|++++|...|..+..++|++|.++..+
T Consensus 34 ~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~----~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~a 109 (157)
T PRK15363 34 PLNTLYRYAMQLMEVKEFAGAARLFQLLTI----YDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAA 109 (157)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH----hCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHH
Confidence 344555677778899999999999999885 344 567788888889999999999999999999999999999999
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCC
Q 038200 439 LNVYAVAGQWEDVARVRELMKKRR 462 (523)
Q Consensus 439 ~~~~~~~g~~~~A~~~~~~m~~~~ 462 (523)
+.+|...|+.+.|.+.|+......
T Consensus 110 g~c~L~lG~~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 110 AECYLACDNVCYAIKALKAVVRIC 133 (157)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHh
Confidence 999999999999999999887653
No 138
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.34 E-value=0.00013 Score=67.90 Aligned_cols=150 Identities=18% Similarity=0.155 Sum_probs=117.6
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcCCCHHHHHH-HHHHHhhcCcHHHHHHHHHHhhHhcCCCCC-hHHHH
Q 038200 288 WNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIG-VICACVRAELLTEGRKYFRQMIDFYKIKPN-FAHYW 365 (523)
Q Consensus 288 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~-ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~ 365 (523)
+--....+...|++++|+..+..++.. .|+...|.. ....+.+.++..+|.+.++++... .|+ ....-
T Consensus 309 ~YG~A~~~~~~~~~d~A~~~l~~L~~~-------~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l---~P~~~~l~~ 378 (484)
T COG4783 309 QYGRALQTYLAGQYDEALKLLQPLIAA-------QPDNPYYLELAGDILLEANKAKEAIERLKKALAL---DPNSPLLQL 378 (484)
T ss_pred HHHHHHHHHHhcccchHHHHHHHHHHh-------CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc---CCCccHHHH
Confidence 333444556789999999999999985 466555554 456789999999999999999973 444 66777
Q ss_pred HHHHHHHcCCChHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhhHHHHHHHHHhc
Q 038200 366 CMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVA 445 (523)
Q Consensus 366 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 445 (523)
.+..+|.+.|++.+|+.+++..... .+-|+..|..|..+|...|+..++. ...+..|...
T Consensus 379 ~~a~all~~g~~~eai~~L~~~~~~---~p~dp~~w~~LAqay~~~g~~~~a~-----------------~A~AE~~~~~ 438 (484)
T COG4783 379 NLAQALLKGGKPQEAIRILNRYLFN---DPEDPNGWDLLAQAYAELGNRAEAL-----------------LARAEGYALA 438 (484)
T ss_pred HHHHHHHhcCChHHHHHHHHHHhhc---CCCCchHHHHHHHHHHHhCchHHHH-----------------HHHHHHHHhC
Confidence 8899999999999999999998864 4667889999999999999865544 4556677888
Q ss_pred CChhHHHHHHHHHHhCCCccCC
Q 038200 446 GQWEDVARVRELMKKRRMGRMP 467 (523)
Q Consensus 446 g~~~~A~~~~~~m~~~~~~~~~ 467 (523)
|+|++|+..+.+.+++.-...+
T Consensus 439 G~~~~A~~~l~~A~~~~~~~~~ 460 (484)
T COG4783 439 GRLEQAIIFLMRASQQVKLGFP 460 (484)
T ss_pred CCHHHHHHHHHHHHHhccCCcH
Confidence 9999999888888776433333
No 139
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.34 E-value=0.00022 Score=60.48 Aligned_cols=184 Identities=13% Similarity=0.044 Sum_probs=103.7
Q ss_pred cCCchHHHHHHHHHHH---CC-CCCCHHH-HHHHHHHHhccccHHHHHHHHHHHHHcCCCCchHHHHHHhhhhhhcCChH
Q 038200 197 SGNPGCSLKLFREMMK---SG-FRGNDKT-MASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVE 271 (523)
Q Consensus 197 ~~~~~~a~~~~~~m~~---~~-~~p~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 271 (523)
..+.++.++++.++.. .| ..++..+ |..++-+....|+.+.|...++++...- +-+..+-..-.-.+-..|+++
T Consensus 25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f-p~S~RV~~lkam~lEa~~~~~ 103 (289)
T KOG3060|consen 25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF-PGSKRVGKLKAMLLEATGNYK 103 (289)
T ss_pred ccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhchh
Confidence 4456666666666643 23 3344433 3444445556666677777776666553 222222222222334456677
Q ss_pred HHHHHHHhcCCC---ChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcCCCHHHHHHHHHHHhhcCcHHHHHHHH
Q 038200 272 VAQRVFDSMADR---NLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYF 348 (523)
Q Consensus 272 ~a~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 348 (523)
+|+++|+.+.+. |.+++-.-+...-..|+.-+|++-+....+. +..|...|.-+...|...|++++|.-.+
T Consensus 104 ~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~------F~~D~EAW~eLaeiY~~~~~f~kA~fCl 177 (289)
T KOG3060|consen 104 EAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK------FMNDQEAWHELAEIYLSEGDFEKAAFCL 177 (289)
T ss_pred hHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH------hcCcHHHHHHHHHHHHhHhHHHHHHHHH
Confidence 777777766542 3345555555555566666666666666664 4556667777777777777777777777
Q ss_pred HHhhHhcCCCCChHHHHHHHHHHHcCC---ChHHHHHHHHhCCC
Q 038200 349 RQMIDFYKIKPNFAHYWCMANLYAGAE---LTEEAEEILRKMPE 389 (523)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~ 389 (523)
+++.- -.+.++..+..+...+.-.| +.+-|.++|.+.++
T Consensus 178 EE~ll--~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alk 219 (289)
T KOG3060|consen 178 EELLL--IQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALK 219 (289)
T ss_pred HHHHH--cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 77664 22334455555555544333 34456666666663
No 140
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.33 E-value=2.3e-05 Score=63.43 Aligned_cols=126 Identities=14% Similarity=0.102 Sum_probs=71.6
Q ss_pred HHHHHHHHhhcCcHHHHHHHHHHhhHhcCCCC-ChHHHHHHHHHHHcCCChHHHHHHHHhCCCCCCCCCch--HHHHHHH
Q 038200 328 FIGVICACVRAELLTEGRKYFRQMIDFYKIKP-NFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFE--SIMWVSL 404 (523)
Q Consensus 328 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~--~~~~~~l 404 (523)
|..++..+ ..++...+...++.+.+.++-.+ .....-.+...+...|++++|.+.|+.+.... ..|. ......+
T Consensus 15 y~~~~~~~-~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~--~d~~l~~~a~l~L 91 (145)
T PF09976_consen 15 YEQALQAL-QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANA--PDPELKPLARLRL 91 (145)
T ss_pred HHHHHHHH-HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCHHHHHHHHHHH
Confidence 33344443 35666666666666666422111 12333345566667777777777777776431 1111 2334445
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHH
Q 038200 405 LSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVREL 457 (523)
Q Consensus 405 ~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 457 (523)
...+...|++++|...++.... .+-.+..+..++.+|.+.|++++|...|+.
T Consensus 92 A~~~~~~~~~d~Al~~L~~~~~-~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 92 ARILLQQGQYDEALATLQQIPD-EAFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHcCCHHHHHHHHHhccC-cchHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 5566677777777777755322 222455666777777777777777777764
No 141
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=98.32 E-value=0.0028 Score=58.62 Aligned_cols=401 Identities=9% Similarity=0.023 Sum_probs=199.7
Q ss_pred HhhccCCchhHHHHhccCCC---CC------cccHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCcccHHHHHHHH--H
Q 038200 30 HSADFGSPDYTVLVFKCINN---PG------TFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSC--A 98 (523)
Q Consensus 30 ~~~~~g~~~~A~~~~~~~~~---~~------~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~--~ 98 (523)
.+.+.+++.+|.++|.++-. .+ .+.-+.++++|..+ +.+.....+....+. .| ...|..+..++ -
T Consensus 15 ~Lqkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl~-nld~Me~~l~~l~~~--~~-~s~~l~LF~~L~~Y 90 (549)
T PF07079_consen 15 ILQKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFLN-NLDLMEKQLMELRQQ--FG-KSAYLPLFKALVAY 90 (549)
T ss_pred HHHHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHHh-hHHHHHHHHHHHHHh--cC-CchHHHHHHHHHHH
Confidence 45678999999999988742 22 12345667777654 555555566666553 34 44566666664 3
Q ss_pred ccCCchHHHHHHHHHHHh--CCC------------CCchHHHHHHHHHHccCChHHHHHHHhhcCC--------CCcchH
Q 038200 99 KTGCVERGGMCHGLALKN--GVD------------FELPVMNSLINMYGCFGAMDCARNMFVQMSP--------RDLISW 156 (523)
Q Consensus 99 ~~~~~~~a~~~~~~~~~~--~~~------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--------~~~~~~ 156 (523)
+.+.+++|.+.+..-... +.. +|-..-+..+.+++..|.+.+++.+++++.+ -+..+|
T Consensus 91 ~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~y 170 (549)
T PF07079_consen 91 KQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMY 170 (549)
T ss_pred HhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHH
Confidence 778899998887766554 221 1222335667788889999999988888762 266677
Q ss_pred HHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc--cc
Q 038200 157 NSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRS--AR 234 (523)
Q Consensus 157 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~--~~ 234 (523)
+.++-.+++.=-++.-.. +...=..-|.-++..|.+.=+.-++ -.-..+.|....+..++....-. .+
T Consensus 171 d~~vlmlsrSYfLEl~e~----~s~dl~pdyYemilfY~kki~~~d~------~~Y~k~~peeeL~s~imqhlfi~p~e~ 240 (549)
T PF07079_consen 171 DRAVLMLSRSYFLELKES----MSSDLYPDYYEMILFYLKKIHAFDQ------RPYEKFIPEEELFSTIMQHLFIVPKER 240 (549)
T ss_pred HHHHHHHhHHHHHHHHHh----cccccChHHHHHHHHHHHHHHHHhh------chHHhhCcHHHHHHHHHHHHHhCCHhh
Confidence 765544433211111111 0000011122233332221100000 00001223333333333322211 11
Q ss_pred HHHHHHHHHHHHHcCCCCch-HHHHHHhhhhhhcCChHHHHHHHHhcC--------CCChHHHHHHHHHHHhcCChHHHH
Q 038200 235 FNEGRSVHGYTVRTSLKPNI-ILDTALIDLYSKCQKVEVAQRVFDSMA--------DRNLVCWNAMILGHCIHGKPEEGI 305 (523)
Q Consensus 235 ~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~--------~~~~~~~~~li~~~~~~g~~~~a~ 305 (523)
..--.+++......-+.|+- -+...|...+.. +.+++..+.+.+. +.-..++..++....+.++...|.
T Consensus 241 l~~~mq~l~~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~ 318 (549)
T PF07079_consen 241 LPPLMQILENWENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAK 318 (549)
T ss_pred ccHHHHHHHHHHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 11222333333333333432 222233333332 3333333322221 122345566666666666666666
Q ss_pred HHHHHHHhCCCCCCCcCCCHHH----------HH-----------------------------------HHHH---HHhh
Q 038200 306 KLFTALVNGTVAGGSISPDEIT----------FI-----------------------------------GVIC---ACVR 337 (523)
Q Consensus 306 ~~~~~m~~~~~~~~~~~p~~~~----------~~-----------------------------------~ll~---~~~~ 337 (523)
+.+.-+... .|+... +. .|+. -+-+
T Consensus 319 q~l~lL~~l-------dp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiDrqQLvh~L~~~Ak~lW~ 391 (549)
T PF07079_consen 319 QYLALLKIL-------DPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDIDRQQLVHYLVFGAKHLWE 391 (549)
T ss_pred HHHHHHHhc-------CCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHh
Confidence 666555442 233221 00 1111 1112
Q ss_pred cCc-HHHHHHHHHHhhHhcCCCCChHHHHHHH----HHHHc---CCChHHHHHHHHhCCCCCCCCCc----hHHHHHHHH
Q 038200 338 AEL-LTEGRKYFRQMIDFYKIKPNFAHYWCMA----NLYAG---AELTEEAEEILRKMPEDNDNMSF----ESIMWVSLL 405 (523)
Q Consensus 338 ~~~-~~~a~~~~~~~~~~~~~~~~~~~~~~l~----~~~~~---~g~~~~A~~~~~~~~~~~~~~~~----~~~~~~~l~ 405 (523)
.|. -++|+.+++.+.+- -+-|..+-+.+. ..|.. ...+.+-+.+-+-+. ..|++| +...-+.+.
T Consensus 392 ~g~~dekalnLLk~il~f--t~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~--e~gl~~i~i~e~eian~La 467 (549)
T PF07079_consen 392 IGQCDEKALNLLKLILQF--TNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFIT--EVGLTPITISEEEIANFLA 467 (549)
T ss_pred cCCccHHHHHHHHHHHHh--ccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH--hcCCCcccccHHHHHHHHH
Confidence 222 44455555555441 111222221111 11111 111111111111111 234444 345666666
Q ss_pred HH--HHhcCCHHHHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHH
Q 038200 406 SL--CRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELM 458 (523)
Q Consensus 406 ~~--~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 458 (523)
.| +..+|++.++.-+-..+.+..| ++.+|..++-++....++++|..++..+
T Consensus 468 DAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~L 521 (549)
T PF07079_consen 468 DAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKL 521 (549)
T ss_pred HHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhC
Confidence 65 6789999999999999999999 8999999999999999999999999865
No 142
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.26 E-value=1.7e-06 Score=50.41 Aligned_cols=35 Identities=14% Similarity=0.386 Sum_probs=29.1
Q ss_pred ccHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCc
Q 038200 53 FCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNS 87 (523)
Q Consensus 53 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~ 87 (523)
.+||.+|.+|++.|++++|.++|++|.+.|+.||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 36888888888888888888888888888888873
No 143
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.23 E-value=2.3e-05 Score=73.40 Aligned_cols=120 Identities=13% Similarity=0.105 Sum_probs=93.3
Q ss_pred HHHHHHHhCCCchHHHHHHHHHHHCCCCCCcccHHHHHHHHHccCCchHHHHHHHHHHHhCCCCCchHHHHHHHHHHccC
Q 038200 57 AVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFG 136 (523)
Q Consensus 57 ~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 136 (523)
.|+..+...++++.|+++|+++.+.. |+ ....++..+...++-.+|.+++.+.++..+. +..........+.+.+
T Consensus 174 ~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~-d~~LL~~Qa~fLl~k~ 248 (395)
T PF09295_consen 174 TLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKENPQ-DSELLNLQAEFLLSKK 248 (395)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcC
Confidence 45556666788889999999888764 54 3455677777777888888888888876433 6777777778888889
Q ss_pred ChHHHHHHHhhcC--CC-CcchHHHHHHHHHhcCCHHHHHHHHhcCCC
Q 038200 137 AMDCARNMFVQMS--PR-DLISWNSIVSGHVRSGDMSAAHELFDIMPE 181 (523)
Q Consensus 137 ~~~~A~~~~~~~~--~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 181 (523)
+.+.|+++.+++. .| +-.+|..|..+|...|+++.|+..++.++-
T Consensus 249 ~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm 296 (395)
T PF09295_consen 249 KYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCPM 296 (395)
T ss_pred CHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcC
Confidence 9999999988886 34 556888899999999999999999888874
No 144
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.20 E-value=2.7e-05 Score=60.75 Aligned_cols=99 Identities=16% Similarity=0.041 Sum_probs=52.1
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCC---hhhHHHHH
Q 038200 363 HYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQD---FSRYQFLL 439 (523)
Q Consensus 363 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~ 439 (523)
++..++..+.+.|++++|.+.++++.....+.......+..+..++...|+++.|...++.+....|++ +.++..++
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 344455555555666666666655553211111112333444555566666666666666666555542 34455556
Q ss_pred HHHHhcCChhHHHHHHHHHHhC
Q 038200 440 NVYAVAGQWEDVARVRELMKKR 461 (523)
Q Consensus 440 ~~~~~~g~~~~A~~~~~~m~~~ 461 (523)
.++.+.|++++|...++++.+.
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHHH
Confidence 6666666666666666665554
No 145
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.18 E-value=2.9e-06 Score=49.04 Aligned_cols=33 Identities=24% Similarity=0.471 Sum_probs=25.1
Q ss_pred ccHHHHHHHHHhCCCchHHHHHHHHHHHCCCCC
Q 038200 53 FCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMP 85 (523)
Q Consensus 53 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p 85 (523)
.+||.+|.+|++.|+++.|.++|+.|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 567777777777777777777777777777766
No 146
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.16 E-value=4.4e-05 Score=59.51 Aligned_cols=112 Identities=7% Similarity=0.021 Sum_probs=84.5
Q ss_pred HHHHHHHHHHhhcCcHHHHHHHHHHhhHhcCCCC-ChHHHHHHHHHHHcCCChHHHHHHHHhCCCCCCCCCchHHHHHHH
Q 038200 326 ITFIGVICACVRAELLTEGRKYFRQMIDFYKIKP-NFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSL 404 (523)
Q Consensus 326 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l 404 (523)
.++..+...+.+.|++++|...|+.+.+.+.-.+ ....+..+..++.+.|++++|.+.++.+.....+.......+..+
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~ 82 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKL 82 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHH
Confidence 3566677788889999999999999987421111 145666788999999999999999999875322222234567777
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhcCCCChhhHHH
Q 038200 405 LSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQF 437 (523)
Q Consensus 405 ~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 437 (523)
..++...|+.+.|...++.+.+..|+++.+...
T Consensus 83 ~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~ 115 (119)
T TIGR02795 83 GMSLQELGDKEKAKATLQQVIKRYPGSSAAKLA 115 (119)
T ss_pred HHHHHHhCChHHHHHHHHHHHHHCcCChhHHHH
Confidence 788889999999999999999999987655443
No 147
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.14 E-value=2.9e-05 Score=57.52 Aligned_cols=95 Identities=19% Similarity=0.120 Sum_probs=76.2
Q ss_pred HHHHHHHHHcCCChHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhhHHHHHHHHH
Q 038200 364 YWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYA 443 (523)
Q Consensus 364 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 443 (523)
+..+...+...|++++|...++++.+. .+.+...+..+...+...|+++.|...++.+....|.++.++..++.++.
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALEL---DPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYY 79 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhc---CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHH
Confidence 455677778888999999999888753 23334566677777888899999999999999888888888889999999
Q ss_pred hcCChhHHHHHHHHHHhC
Q 038200 444 VAGQWEDVARVRELMKKR 461 (523)
Q Consensus 444 ~~g~~~~A~~~~~~m~~~ 461 (523)
..|++++|...+++..+.
T Consensus 80 ~~~~~~~a~~~~~~~~~~ 97 (100)
T cd00189 80 KLGKYEEALEAYEKALEL 97 (100)
T ss_pred HHHhHHHHHHHHHHHHcc
Confidence 999999999988887553
No 148
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.13 E-value=0.00026 Score=57.30 Aligned_cols=125 Identities=13% Similarity=0.136 Sum_probs=91.7
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcCCCH----HHHHHHHHHHhhcCcHHHHHHHHHHhhHhcCCCCC--
Q 038200 287 CWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDE----ITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPN-- 360 (523)
Q Consensus 287 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~p~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-- 360 (523)
.|..++..+ ..++...+...++.+.... |+. .....+...+...|++++|...|+.+... ...|+
T Consensus 14 ~y~~~~~~~-~~~~~~~~~~~~~~l~~~~-------~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~-~~d~~l~ 84 (145)
T PF09976_consen 14 LYEQALQAL-QAGDPAKAEAAAEQLAKDY-------PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALAN-APDPELK 84 (145)
T ss_pred HHHHHHHHH-HCCCHHHHHHHHHHHHHHC-------CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-CCCHHHH
Confidence 455555555 4788888888899998865 332 33444557788899999999999999885 32222
Q ss_pred hHHHHHHHHHHHcCCChHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 038200 361 FAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSF 424 (523)
Q Consensus 361 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 424 (523)
......|...+...|++++|+..++.... .......+......+...|+.++|...|+++
T Consensus 85 ~~a~l~LA~~~~~~~~~d~Al~~L~~~~~----~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 85 PLARLRLARILLQQGQYDEALATLQQIPD----EAFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHhccC----cchHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 23455678888999999999999988652 2334556666777899999999999999875
No 149
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.10 E-value=5.9e-06 Score=47.69 Aligned_cols=33 Identities=30% Similarity=0.681 Sum_probs=25.9
Q ss_pred hHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCC
Q 038200 185 VSWNIMISGYSKSGNPGCSLKLFREMMKSGFRG 217 (523)
Q Consensus 185 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p 217 (523)
.+|+.++.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 567788888888888888888888888777766
No 150
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.10 E-value=5.3e-06 Score=48.27 Aligned_cols=33 Identities=33% Similarity=0.694 Sum_probs=27.4
Q ss_pred HHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCC
Q 038200 186 SWNIMISGYSKSGNPGCSLKLFREMMKSGFRGN 218 (523)
Q Consensus 186 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~ 218 (523)
+||++|.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 678888888888888888888888888888776
No 151
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.05 E-value=5.6e-06 Score=59.80 Aligned_cols=82 Identities=18% Similarity=0.153 Sum_probs=52.1
Q ss_pred CCChHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChhHHHH
Q 038200 374 AELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVAR 453 (523)
Q Consensus 374 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 453 (523)
.|+++.|+.+++++.+.... .++...+..+..++.+.|++++|..++++ .+.+|.++.....++.+|.+.|++++|++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~-~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPT-NPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCG-THHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCC-ChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 46677777777776643110 12444555566677777777777777777 55566566666677777888888888877
Q ss_pred HHHH
Q 038200 454 VREL 457 (523)
Q Consensus 454 ~~~~ 457 (523)
++++
T Consensus 80 ~l~~ 83 (84)
T PF12895_consen 80 ALEK 83 (84)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 7764
No 152
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=98.03 E-value=2.2e-05 Score=54.25 Aligned_cols=65 Identities=20% Similarity=0.235 Sum_probs=58.5
Q ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhhHHHHHHHHHhcC-ChhHHHHHHHHHHhC
Q 038200 397 ESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAG-QWEDVARVRELMKKR 461 (523)
Q Consensus 397 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g-~~~~A~~~~~~m~~~ 461 (523)
++.+|..+...+...|++++|+..|+++++.+|+++.+|..++.+|...| ++++|++.+++..+.
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l 67 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKL 67 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence 35678888888999999999999999999999999999999999999999 799999999987653
No 153
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.02 E-value=0.00092 Score=60.95 Aligned_cols=195 Identities=9% Similarity=0.039 Sum_probs=88.5
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHHHCCCC---C-C-HHHHHHHHHHHhccccHHHHHHHHHHHHHcCCCCchHHHHHHh
Q 038200 187 WNIMISGYSKSGNPGCSLKLFREMMKSGFR---G-N-DKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALI 261 (523)
Q Consensus 187 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~---p-~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 261 (523)
|......|...+++++|.+.|.+....... + + ...|.....++.+. ++++|...+++ .+
T Consensus 38 y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~---------------A~ 101 (282)
T PF14938_consen 38 YEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEK---------------AI 101 (282)
T ss_dssp HHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHH---------------HH
T ss_pred HHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHH---------------HH
Confidence 444566777788888888877766432110 0 0 11222222222222 44444444433 33
Q ss_pred hhhhhcCChHHHHHHHHhcCCCChHHHHHHHHHHHhc-CChHHHHHHHHHHHhCCCCCCCcCCCHHHHHHHHHHHhhcCc
Q 038200 262 DLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIH-GKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAEL 340 (523)
Q Consensus 262 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~-g~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~ll~~~~~~~~ 340 (523)
..|...|++..|-..+. .+...|... |+++.|++.|++..+.-...+...--...+..+...+.+.|+
T Consensus 102 ~~y~~~G~~~~aA~~~~-----------~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~ 170 (282)
T PF14938_consen 102 EIYREAGRFSQAAKCLK-----------ELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGR 170 (282)
T ss_dssp HHHHHCT-HHHHHHHHH-----------HHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-
T ss_pred HHHHhcCcHHHHHHHHH-----------HHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCC
Confidence 34455555555444333 234455555 666666666666544210000000012244555566667777
Q ss_pred HHHHHHHHHHhhHhcC----CCCChH-HHHHHHHHHHcCCChHHHHHHHHhCCCCCCCCCch--HHHHHHHHHHH
Q 038200 341 LTEGRKYFRQMIDFYK----IKPNFA-HYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFE--SIMWVSLLSLC 408 (523)
Q Consensus 341 ~~~a~~~~~~~~~~~~----~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~--~~~~~~l~~~~ 408 (523)
+++|.++|+++....- .+.+.. .+...+-++...|++..|.+.+++......++..+ ......|+.++
T Consensus 171 y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~ 245 (282)
T PF14938_consen 171 YEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAY 245 (282)
T ss_dssp HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHH
Confidence 7777777776655311 111121 22233334555667777777777665443333222 34444455544
No 154
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.00 E-value=0.00017 Score=62.82 Aligned_cols=109 Identities=15% Similarity=0.018 Sum_probs=73.9
Q ss_pred HhhcCcHHHHHHHHHHhhHhcCCCCChHHHHHHHHHHHcCCChHHHHHHHHhCCCCCCCCCch-HHHHHHHHHHHHhcCC
Q 038200 335 CVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFE-SIMWVSLLSLCRFQGA 413 (523)
Q Consensus 335 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~ 413 (523)
+.+.+++++|+..|.++++ -.+-|+..|..=..+|.+.|.++.|++-.+..+. +.|. ...|..|..+|...|+
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~--l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~----iDp~yskay~RLG~A~~~~gk 164 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIE--LDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALS----IDPHYSKAYGRLGLAYLALGK 164 (304)
T ss_pred HHHhhhHHHHHHHHHHHHh--cCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHh----cChHHHHHHHHHHHHHHccCc
Confidence 4556777777777777776 3344566666677777777777777777777764 3443 5677777777777788
Q ss_pred HHHHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChh
Q 038200 414 VAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWE 449 (523)
Q Consensus 414 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 449 (523)
+++|.+.|+++++++|++......|-.+=.+.+...
T Consensus 165 ~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e~~ 200 (304)
T KOG0553|consen 165 YEEAIEAYKKALELDPDNESYKSNLKIAEQKLNEPK 200 (304)
T ss_pred HHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhcCCC
Confidence 888888888888888877655555554444444433
No 155
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.97 E-value=0.00013 Score=60.98 Aligned_cols=92 Identities=12% Similarity=0.056 Sum_probs=70.9
Q ss_pred hHHHHHHHHHHHcCCChHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhhHHHHHH
Q 038200 361 FAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLN 440 (523)
Q Consensus 361 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 440 (523)
...+..+...+...|++++|...|++..............+..+...+...|+++.|...++++.+..|.++..+..++.
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~ 114 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAV 114 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence 45677778888888999999999988874321111124567777888899999999999999999999988888999999
Q ss_pred HHHhcCChhHHH
Q 038200 441 VYAVAGQWEDVA 452 (523)
Q Consensus 441 ~~~~~g~~~~A~ 452 (523)
+|...|+...+.
T Consensus 115 ~~~~~g~~~~a~ 126 (172)
T PRK02603 115 IYHKRGEKAEEA 126 (172)
T ss_pred HHHHcCChHhHh
Confidence 998888744433
No 156
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.95 E-value=3.7e-05 Score=52.31 Aligned_cols=58 Identities=14% Similarity=0.118 Sum_probs=47.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 038200 404 LLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKR 461 (523)
Q Consensus 404 l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 461 (523)
+...+...|++++|...++.+++..|+++.++..++.++...|++++|..+|+++.+.
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3456778888888888888888888888888888888888888888888888888654
No 157
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.95 E-value=9.9e-05 Score=69.46 Aligned_cols=109 Identities=12% Similarity=-0.043 Sum_probs=89.5
Q ss_pred HHHHHhhcCcHHHHHHHHHHhhHhcCCCCChHHHHHHHHHHHcCCChHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHh
Q 038200 331 VICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRF 410 (523)
Q Consensus 331 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 410 (523)
-...+...|+++.|+..|+++.+. .+.+...|..+..+|...|++++|+..+++++.. .+.+...|..+..+|..
T Consensus 8 ~a~~a~~~~~~~~Ai~~~~~Al~~--~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l---~P~~~~a~~~lg~~~~~ 82 (356)
T PLN03088 8 KAKEAFVDDDFALAVDLYTQAIDL--DPNNAELYADRAQANIKLGNFTEAVADANKAIEL---DPSLAKAYLRKGTACMK 82 (356)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CcCCHHHHHHHHHHHHH
Confidence 345677889999999999999983 4456788888999999999999999999999863 23356677888888999
Q ss_pred cCCHHHHHHHHHHHhhcCCCChhhHHHHHHHHHh
Q 038200 411 QGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAV 444 (523)
Q Consensus 411 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 444 (523)
.|++++|...++++++++|+++.....+..+..+
T Consensus 83 lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~k 116 (356)
T PLN03088 83 LEEYQTAKAALEKGASLAPGDSRFTKLIKECDEK 116 (356)
T ss_pred hCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 9999999999999999999988777666555433
No 158
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.94 E-value=0.00032 Score=61.60 Aligned_cols=108 Identities=12% Similarity=0.108 Sum_probs=90.7
Q ss_pred CCCChHHHHHHHHHHHcCCChHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHhc---CCHHHHHHHHHHHhhcCCCChh
Q 038200 357 IKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQ---GAVAMVERLAKSFVDMDPQDFS 433 (523)
Q Consensus 357 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~a~~~~~~~~~~~p~~~~ 433 (523)
.+-|...|..|...|...|+++.|..-|.+..+. ..++...+..+..++..+ .+..++..++++++..+|.++.
T Consensus 152 nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL---~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~ir 228 (287)
T COG4235 152 NPGDAEGWDLLGRAYMALGRASDALLAYRNALRL---AGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIR 228 (287)
T ss_pred CCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHH
Confidence 4557999999999999999999999999998864 244566666776664333 3478999999999999999999
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCC
Q 038200 434 RYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMP 467 (523)
Q Consensus 434 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~ 467 (523)
+...|+..+...|++.+|...|+.|.+.....+|
T Consensus 229 al~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~ 262 (287)
T COG4235 229 ALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADDP 262 (287)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCCc
Confidence 9999999999999999999999999887654444
No 159
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.93 E-value=0.00022 Score=67.12 Aligned_cols=103 Identities=13% Similarity=0.114 Sum_probs=84.0
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcCCC-HHHHHHHHHHHhhcCcHHHHHHHHHHhhHhcCCCCChHHHHHHH
Q 038200 290 AMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPD-EITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMA 368 (523)
Q Consensus 290 ~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 368 (523)
.....+...|++++|+.+|++++. ..|+ ...|..+..+|...|++++|+..++++.+. -+.+...|..+.
T Consensus 7 ~~a~~a~~~~~~~~Ai~~~~~Al~-------~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l--~P~~~~a~~~lg 77 (356)
T PLN03088 7 DKAKEAFVDDDFALAVDLYTQAID-------LDPNNAELYADRAQANIKLGNFTEAVADANKAIEL--DPSLAKAYLRKG 77 (356)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHH-------hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCCHHHHHHHH
Confidence 345667889999999999999998 8886 557777888999999999999999999873 344678888999
Q ss_pred HHHHcCCChHHHHHHHHhCCCCCCCCCchHHHHHHHH
Q 038200 369 NLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLL 405 (523)
Q Consensus 369 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~ 405 (523)
.+|...|++++|...|++..+ +.|+...+...+
T Consensus 78 ~~~~~lg~~~eA~~~~~~al~----l~P~~~~~~~~l 110 (356)
T PLN03088 78 TACMKLEEYQTAKAALEKGAS----LAPGDSRFTKLI 110 (356)
T ss_pred HHHHHhCCHHHHHHHHHHHHH----hCCCCHHHHHHH
Confidence 999999999999999999985 455544444443
No 160
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.92 E-value=0.00015 Score=60.48 Aligned_cols=98 Identities=8% Similarity=-0.110 Sum_probs=77.2
Q ss_pred ChHHHHHHHHHHHcCCChHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhhHHHHH
Q 038200 360 NFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLL 439 (523)
Q Consensus 360 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 439 (523)
....|..++..+...|++++|+..+++......+......++..+...+...|++++|...++++.++.|.....+..++
T Consensus 34 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la 113 (168)
T CHL00033 34 EAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMA 113 (168)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHH
Confidence 45667778888889999999999999987432111112457888888999999999999999999999998888888888
Q ss_pred HHHH-------hcCChhHHHHHHHH
Q 038200 440 NVYA-------VAGQWEDVARVREL 457 (523)
Q Consensus 440 ~~~~-------~~g~~~~A~~~~~~ 457 (523)
.+|. ..|++++|...+++
T Consensus 114 ~i~~~~~~~~~~~g~~~~A~~~~~~ 138 (168)
T CHL00033 114 VICHYRGEQAIEQGDSEIAEAWFDQ 138 (168)
T ss_pred HHHHHhhHHHHHcccHHHHHHHHHH
Confidence 8888 77787766555543
No 161
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.92 E-value=0.00014 Score=66.26 Aligned_cols=132 Identities=13% Similarity=0.211 Sum_probs=86.0
Q ss_pred HHHHHHHHHhhc-CcHHHHHHHHHHhhHhcCCCCC----hHHHHHHHHHHHcCCChHHHHHHHHhCCCCCCC---CCchH
Q 038200 327 TFIGVICACVRA-ELLTEGRKYFRQMIDFYKIKPN----FAHYWCMANLYAGAELTEEAEEILRKMPEDNDN---MSFES 398 (523)
Q Consensus 327 ~~~~ll~~~~~~-~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~~ 398 (523)
.+..+...|... |+++.|++.|++..+.+..... ..++..+...+.+.|++++|.++|+++...... ...+.
T Consensus 116 ~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~ 195 (282)
T PF14938_consen 116 CLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSA 195 (282)
T ss_dssp HHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhH
Confidence 455566677777 8999999999998775432222 456677888999999999999999987643211 12222
Q ss_pred H-HHHHHHHHHHhcCCHHHHHHHHHHHhhcCCC-----ChhhHHHHHHHHHh--cCChhHHHHHHHHH
Q 038200 399 I-MWVSLLSLCRFQGAVAMVERLAKSFVDMDPQ-----DFSRYQFLLNVYAV--AGQWEDVARVRELM 458 (523)
Q Consensus 399 ~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~-----~~~~~~~l~~~~~~--~g~~~~A~~~~~~m 458 (523)
. .+...+-.+...||...|.+.++...+.+|. .......|+.+|.. ...+.+++.-|+.+
T Consensus 196 ~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D~e~f~~av~~~d~~ 263 (282)
T PF14938_consen 196 KEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEEGDVEAFTEAVAEYDSI 263 (282)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-CCCHHHHCHHHTTS
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHccc
Confidence 2 2333444667789999999999999998874 23355566777654 24455666666544
No 162
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.91 E-value=0.00054 Score=62.15 Aligned_cols=136 Identities=11% Similarity=0.137 Sum_probs=104.4
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcCCCHHHHHHHHHH-HhhcCcHHHHHHHHHHhhHhcCCCCChHHH
Q 038200 286 VCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICA-CVRAELLTEGRKYFRQMIDFYKIKPNFAHY 364 (523)
Q Consensus 286 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~ll~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 364 (523)
.+|..++...-+.+..+.|..+|.+..+.+ ..+...|...... +...++.+.|..+|+...+. +..+...|
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~------~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~--f~~~~~~~ 73 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK------RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK--FPSDPDFW 73 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC------CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH--HTT-HHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC------CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--CCCCHHHH
Confidence 468888888888889999999999998654 2233444444443 33357788899999999984 56677888
Q ss_pred HHHHHHHHcCCChHHHHHHHHhCCCCCCCCCch---HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCh
Q 038200 365 WCMANLYAGAELTEEAEEILRKMPEDNDNMSFE---SIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDF 432 (523)
Q Consensus 365 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~ 432 (523)
...++.+...|+.+.|..+|++.... +.++ ..+|...+..-.+.|+.+.+..+.+++.+.-|.+.
T Consensus 74 ~~Y~~~l~~~~d~~~aR~lfer~i~~---l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~ 141 (280)
T PF05843_consen 74 LEYLDFLIKLNDINNARALFERAISS---LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDN 141 (280)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHCCT---SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-
T ss_pred HHHHHHHHHhCcHHHHHHHHHHHHHh---cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhh
Confidence 89999999999999999999999864 3333 36899999999999999999999999999887643
No 163
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.88 E-value=0.0001 Score=64.23 Aligned_cols=112 Identities=13% Similarity=0.074 Sum_probs=91.8
Q ss_pred HHHHHcCCChHHHHHHHHhCCCCCCCCCc-hHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhhHHHHHHHHHhcC
Q 038200 368 ANLYAGAELTEEAEEILRKMPEDNDNMSF-ESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAG 446 (523)
Q Consensus 368 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 446 (523)
..-+.+.+++++|+..|.+.++ +.| |++.|..-..+|.+.|.++.|.+-.+.++.++|....+|..|+.+|...|
T Consensus 88 GN~~m~~~~Y~eAv~kY~~AI~----l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~g 163 (304)
T KOG0553|consen 88 GNKLMKNKDYQEAVDKYTEAIE----LDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALG 163 (304)
T ss_pred HHHHHHhhhHHHHHHHHHHHHh----cCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccC
Confidence 3456788999999999999996 455 56666677778999999999999999999999999999999999999999
Q ss_pred ChhHHHHHHHHHHhCCCccCCceeEEEeCCeEEEEecCCCCchHHHHHHHHHHhccc
Q 038200 447 QWEDVARVRELMKKRRMGRMPGCRLVDLKEVVEKLKVGHFWRGGMKEEVNKMMECRQ 503 (523)
Q Consensus 447 ~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 503 (523)
++++|++.|++..+ .+|+. +-.++.++..++.+++.+
T Consensus 164 k~~~A~~aykKaLe----ldP~N----------------e~~K~nL~~Ae~~l~e~~ 200 (304)
T KOG0553|consen 164 KYEEAIEAYKKALE----LDPDN----------------ESYKSNLKIAEQKLNEPK 200 (304)
T ss_pred cHHHHHHHHHhhhc----cCCCc----------------HHHHHHHHHHHHHhcCCC
Confidence 99999999987644 44532 124566777777777666
No 164
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.85 E-value=2.1e-05 Score=44.15 Aligned_cols=31 Identities=16% Similarity=0.308 Sum_probs=22.5
Q ss_pred ccHHHHHHHHHhCCCchHHHHHHHHHHHCCC
Q 038200 53 FCVNAVIKAYSNSCVPDQGVVFYLQMIKNGF 83 (523)
Q Consensus 53 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~ 83 (523)
++||.++++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 3677777777777777777777777777653
No 165
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.84 E-value=0.00022 Score=52.67 Aligned_cols=97 Identities=16% Similarity=0.122 Sum_probs=63.3
Q ss_pred HHHHHHHHhhcCcHHHHHHHHHHhhHhcCCCCChHHHHHHHHHHHcCCChHHHHHHHHhCCCCCCCCCchHHHHHHHHHH
Q 038200 328 FIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSL 407 (523)
Q Consensus 328 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~ 407 (523)
+..+...+...|++++|..+++.+.+. .+.+...+..+...+...|++++|.+.++..... .+.+...+..+...
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~~~~ 77 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALEL--DPDNADAYYNLAAAYYKLGKYEEALEDYEKALEL---DPDNAKAYYNLGLA 77 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC---CCcchhHHHHHHHH
Confidence 344555666677777777777777652 2333456666777777777777777777776643 22233456666667
Q ss_pred HHhcCCHHHHHHHHHHHhhcCC
Q 038200 408 CRFQGAVAMVERLAKSFVDMDP 429 (523)
Q Consensus 408 ~~~~g~~~~a~~~~~~~~~~~p 429 (523)
+...|+.+.|...++.+.+..|
T Consensus 78 ~~~~~~~~~a~~~~~~~~~~~~ 99 (100)
T cd00189 78 YYKLGKYEEALEAYEKALELDP 99 (100)
T ss_pred HHHHHhHHHHHHHHHHHHccCC
Confidence 7777777777777777776655
No 166
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.83 E-value=0.0046 Score=50.02 Aligned_cols=137 Identities=14% Similarity=0.051 Sum_probs=108.3
Q ss_pred cCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhHhcCCCCChHHHHHHHHHHHcCCChHHHHHHHHhCCCCCC-CCCchHH
Q 038200 321 ISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDND-NMSFESI 399 (523)
Q Consensus 321 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~ 399 (523)
..|+...-..|..++.+.|+..+|...|++...- -+.-|......+.++....+++.+|...++++.+... +-.||.
T Consensus 85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG-~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~- 162 (251)
T COG4700 85 IAPTVQNRYRLANALAELGRYHEAVPHYQQALSG-IFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDG- 162 (251)
T ss_pred hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhcc-ccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCc-
Confidence 4577777778888999999999999999999883 3455788888899999999999999999998775421 223443
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 038200 400 MWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKR 461 (523)
Q Consensus 400 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 461 (523)
...+...+...|.++.|+..|+.+...-| ++..-......+.++|+.+++..-+..+.+.
T Consensus 163 -~Ll~aR~laa~g~~a~Aesafe~a~~~yp-g~~ar~~Y~e~La~qgr~~ea~aq~~~v~d~ 222 (251)
T COG4700 163 -HLLFARTLAAQGKYADAESAFEVAISYYP-GPQARIYYAEMLAKQGRLREANAQYVAVVDT 222 (251)
T ss_pred -hHHHHHHHHhcCCchhHHHHHHHHHHhCC-CHHHHHHHHHHHHHhcchhHHHHHHHHHHHH
Confidence 34566788999999999999999999888 5666777788889999988887766655543
No 167
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.82 E-value=8.4e-05 Score=50.51 Aligned_cols=63 Identities=14% Similarity=0.097 Sum_probs=50.7
Q ss_pred HHHHHHcCCChHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCh
Q 038200 367 MANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDF 432 (523)
Q Consensus 367 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~ 432 (523)
+...+...|++++|.+.|+++++. .+-+...+..+..++...|++++|...++++++..|++|
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~---~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQ---DPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCC---STTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 566788899999999999999864 233677788888888999999999999999999999764
No 168
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.80 E-value=0.0018 Score=59.05 Aligned_cols=159 Identities=9% Similarity=-0.012 Sum_probs=106.4
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCCCCcCCCHHHHHHHHH--HHhhcCcHHHHHHHHHHhhHhcCCCCChHHH------
Q 038200 293 LGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVIC--ACVRAELLTEGRKYFRQMIDFYKIKPNFAHY------ 364 (523)
Q Consensus 293 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~ll~--~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~------ 364 (523)
.++...|++++|.+.--...+.. +.. .+..+++ ++-..++.+.+...|++... ..|+-..-
T Consensus 177 ~cl~~~~~~~~a~~ea~~ilkld-------~~n-~~al~vrg~~~yy~~~~~ka~~hf~qal~---ldpdh~~sk~~~~~ 245 (486)
T KOG0550|consen 177 ECLAFLGDYDEAQSEAIDILKLD-------ATN-AEALYVRGLCLYYNDNADKAINHFQQALR---LDPDHQKSKSASMM 245 (486)
T ss_pred hhhhhcccchhHHHHHHHHHhcc-------cch-hHHHHhcccccccccchHHHHHHHhhhhc---cChhhhhHHhHhhh
Confidence 34556778888877766666532 221 2222332 23345677777777777664 33432211
Q ss_pred -------HHHHHHHHcCCChHHHHHHHHhCCCCC-CCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhhHH
Q 038200 365 -------WCMANLYAGAELTEEAEEILRKMPEDN-DNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQ 436 (523)
Q Consensus 365 -------~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 436 (523)
..=..-..+.|++.+|.+.+.+.+..+ ....|+...|.....+..+.|+.++|+.-.+.+.+++|.-...|.
T Consensus 246 ~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall 325 (486)
T KOG0550|consen 246 PKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALL 325 (486)
T ss_pred HHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHH
Confidence 111233467889999999998887532 223445666777777778889999999999999999887777888
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCC
Q 038200 437 FLLNVYAVAGQWEDVARVRELMKKRR 462 (523)
Q Consensus 437 ~l~~~~~~~g~~~~A~~~~~~m~~~~ 462 (523)
.-+.++...++|++|.+-+++..+..
T Consensus 326 ~ra~c~l~le~~e~AV~d~~~a~q~~ 351 (486)
T KOG0550|consen 326 RRANCHLALEKWEEAVEDYEKAMQLE 351 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 88888888899999999888886643
No 169
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.80 E-value=0.0016 Score=64.26 Aligned_cols=139 Identities=12% Similarity=0.091 Sum_probs=65.5
Q ss_pred CChHHHHHHHHHHHhc-----CChHHHHHHHHHHHhCCCCCCCcCCCH-HHHHHHHHHHhhc--------CcHHHHHHHH
Q 038200 283 RNLVCWNAMILGHCIH-----GKPEEGIKLFTALVNGTVAGGSISPDE-ITFIGVICACVRA--------ELLTEGRKYF 348 (523)
Q Consensus 283 ~~~~~~~~li~~~~~~-----g~~~~a~~~~~~m~~~~~~~~~~~p~~-~~~~~ll~~~~~~--------~~~~~a~~~~ 348 (523)
.+...|...+.+.... +....|..+|++.++ ..|+. ..+..+..++... .+...+.+..
T Consensus 335 ~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~-------ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~ 407 (517)
T PRK10153 335 HQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILK-------SEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTEL 407 (517)
T ss_pred CCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH-------hCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHH
Confidence 4566677766664332 235677777777777 34653 3333332222111 1122222333
Q ss_pred HHhhHhcCCCCChHHHHHHHHHHHcCCChHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcC
Q 038200 349 RQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMD 428 (523)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 428 (523)
++.........++..|..+.-.+...|++++|...++++.+ ..|+...|..+...+...|+.++|.+.++++..++
T Consensus 408 ~~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~----L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~ 483 (517)
T PRK10153 408 DNIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAID----LEMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLR 483 (517)
T ss_pred HHhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHH----cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 32222101222334444444444445555555555555553 23444445555555555555555555555555555
Q ss_pred CCCh
Q 038200 429 PQDF 432 (523)
Q Consensus 429 p~~~ 432 (523)
|.++
T Consensus 484 P~~p 487 (517)
T PRK10153 484 PGEN 487 (517)
T ss_pred CCCc
Confidence 5444
No 170
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=97.77 E-value=0.034 Score=51.69 Aligned_cols=406 Identities=11% Similarity=0.057 Sum_probs=232.4
Q ss_pred HHHHHHHHhCCCCCChhHHHHHHHHhhccCCchhHHHHhccCCCCCcc---cHHHHHHHHHhCCCchHHHHHHHHHHHCC
Q 038200 6 QIQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTF---CVNAVIKAYSNSCVPDQGVVFYLQMIKNG 82 (523)
Q Consensus 6 ~i~~~~~~~g~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~ll~~~~~~~~~~~a~~~~~~m~~~~ 82 (523)
++-+.+... |.|...|-+|+.-+...|..++.+++++++..|-.. +|..-|++=....++.....+|.+.+...
T Consensus 30 rLRerIkdN---PtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~ 106 (660)
T COG5107 30 RLRERIKDN---PTNILSYFQLIQYLETQESMDAEREMYEQLSSPFPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKS 106 (660)
T ss_pred HHHHHhhcC---chhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCCccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhh
Confidence 444555544 688999999999999999999999999999876543 68888988888899999999999998864
Q ss_pred CCCCcccHHHHHHHHHccCCc------hHHHHHHHHHHH-hCCCC-CchHHHHHHHHHH---ccC------ChHHHHHHH
Q 038200 83 FMPNSYTFVSLFGSCAKTGCV------ERGGMCHGLALK-NGVDF-ELPVMNSLINMYG---CFG------AMDCARNMF 145 (523)
Q Consensus 83 ~~p~~~~~~~ll~~~~~~~~~------~~a~~~~~~~~~-~~~~~-~~~~~~~l~~~~~---~~g------~~~~A~~~~ 145 (523)
+ +...|...+...-+.... -...+.++.... .++.| +...|+..+..+- ..| +++...+.+
T Consensus 107 l--~ldLW~lYl~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid~iR~~Y 184 (660)
T COG5107 107 L--NLDLWMLYLEYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRIDKIRNGY 184 (660)
T ss_pred c--cHhHHHHHHHHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHHHHHHHHH
Confidence 4 455566666655443321 123344554444 33444 3345555544332 223 455666667
Q ss_pred hhcCC-C---------CcchHHHHHHHH-----H--hcCCHHHHHHHHhcCCC-------C---ChhH-----------H
Q 038200 146 VQMSP-R---------DLISWNSIVSGH-----V--RSGDMSAAHELFDIMPE-------R---NVVS-----------W 187 (523)
Q Consensus 146 ~~~~~-~---------~~~~~~~ll~~~-----~--~~~~~~~a~~~~~~~~~-------~---~~~~-----------~ 187 (523)
.++.. | |-..|..=++.. . ...-+-.|.+.++++.. . +..+ |
T Consensus 185 ~ral~tP~~nleklW~dy~~fE~e~N~~TarKfvge~sp~ym~ar~~yqe~~nlt~Gl~v~~~~~~Rt~nK~~r~s~S~W 264 (660)
T COG5107 185 MRALQTPMGNLEKLWKDYENFELELNKITARKFVGETSPIYMSARQRYQEIQNLTRGLSVKNPINLRTANKAARTSDSNW 264 (660)
T ss_pred HHHHcCccccHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHhccccccCchhhhhhccccccccchh
Confidence 76652 2 111111111110 0 00112233333333321 0 1111 2
Q ss_pred HHHHHHHHhc-----CCc--hHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHcCCCCchHHHHHH
Q 038200 188 NIMISGYSKS-----GNP--GCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTAL 260 (523)
Q Consensus 188 ~~li~~~~~~-----~~~--~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 260 (523)
-..|.--... |+. ...--++++.... +.-....|.---.-+...++-+.|........ +..+...--+
T Consensus 265 lNwIkwE~en~l~L~~~~~~qRi~y~~~q~~~y-~~~~~evw~dys~Y~~~isd~q~al~tv~rg~----~~spsL~~~l 339 (660)
T COG5107 265 LNWIKWEMENGLKLGGRPHEQRIHYIHNQILDY-FYYAEEVWFDYSEYLIGISDKQKALKTVERGI----EMSPSLTMFL 339 (660)
T ss_pred hhHhhHhhcCCcccCCCcHHHHHHHHHHHHHHH-hhhhHHHHHHHHHHHhhccHHHHHHHHHHhcc----cCCCchheeH
Confidence 2233221111 111 1111122332221 12222233222233344455555554433222 1111111112
Q ss_pred hhhhhhcCChHHHHHHHHhc---------------------------------CCCChHHHHHHHHHHHhcCChHHHHHH
Q 038200 261 IDLYSKCQKVEVAQRVFDSM---------------------------------ADRNLVCWNAMILGHCIHGKPEEGIKL 307 (523)
Q Consensus 261 ~~~~~~~~~~~~a~~~~~~~---------------------------------~~~~~~~~~~li~~~~~~g~~~~a~~~ 307 (523)
...|.-.++-+.....|+++ ...-...|...+..-.+..-.+.|..+
T Consensus 340 se~yel~nd~e~v~~~fdk~~q~L~r~ys~~~s~~~s~~D~N~e~~~Ell~kr~~k~t~v~C~~~N~v~r~~Gl~aaR~~ 419 (660)
T COG5107 340 SEYYELVNDEEAVYGCFDKCTQDLKRKYSMGESESASKVDNNFEYSKELLLKRINKLTFVFCVHLNYVLRKRGLEAARKL 419 (660)
T ss_pred HHHHhhcccHHHHhhhHHHHHHHHHHHHhhhhhhhhccccCCccccHHHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHH
Confidence 22222222222222222221 112345677788888888889999999
Q ss_pred HHHHHhCCCCCCCcCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhHhcCCCCChHHHHHHHHHHHcCCChHHHHHHHHhC
Q 038200 308 FTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKM 387 (523)
Q Consensus 308 ~~~m~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 387 (523)
|-++.+.+. +.++...+++++.-++. |+...|..+|+.-... ++.++..-.-.+.-+.+.++-+.|..+|+..
T Consensus 420 F~k~rk~~~----~~h~vyi~~A~~E~~~~-~d~~ta~~ifelGl~~--f~d~~~y~~kyl~fLi~inde~naraLFets 492 (660)
T COG5107 420 FIKLRKEGI----VGHHVYIYCAFIEYYAT-GDRATAYNIFELGLLK--FPDSTLYKEKYLLFLIRINDEENARALFETS 492 (660)
T ss_pred HHHHhccCC----CCcceeeeHHHHHHHhc-CCcchHHHHHHHHHHh--CCCchHHHHHHHHHHHHhCcHHHHHHHHHHh
Confidence 999998874 56778888888887664 8888999999887763 3333344455667778889999999999977
Q ss_pred CCCCCCCCch--HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCC
Q 038200 388 PEDNDNMSFE--SIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQD 431 (523)
Q Consensus 388 ~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~ 431 (523)
+++ +..+ ..+|..++..-...|+...+..+-+.+.+.-|..
T Consensus 493 v~r---~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQe 535 (660)
T COG5107 493 VER---LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVPQE 535 (660)
T ss_pred HHH---HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcCcH
Confidence 643 3333 5688889988889999999999999998888853
No 171
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.77 E-value=0.00092 Score=55.92 Aligned_cols=129 Identities=10% Similarity=0.103 Sum_probs=70.7
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcCCC--HHHHHHHHHHHhhcCcHHHHHHHHHHhhHhcCCCCChHH
Q 038200 286 VCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPD--EITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAH 363 (523)
Q Consensus 286 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 363 (523)
..+..+...+...|++++|...|++..... ..+. ...+..+...+.+.|++++|...+++..+. .+-+...
T Consensus 36 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-----~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~ 108 (172)
T PRK02603 36 FVYYRDGMSAQADGEYAEALENYEEALKLE-----EDPNDRSYILYNMGIIYASNGEHDKALEYYHQALEL--NPKQPSA 108 (172)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHh-----hccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcccHHH
Confidence 445555666666666666666666666643 1111 234555555566666666666666666552 2223444
Q ss_pred HHHHHHHHHcCCChHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhhHHHHHHHHH
Q 038200 364 YWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYA 443 (523)
Q Consensus 364 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 443 (523)
+..+..++...|+...+..-++... ..+++|.++++++.+.+|++ |..++..+.
T Consensus 109 ~~~lg~~~~~~g~~~~a~~~~~~A~-----------------------~~~~~A~~~~~~a~~~~p~~---~~~~~~~~~ 162 (172)
T PRK02603 109 LNNIAVIYHKRGEKAEEAGDQDEAE-----------------------ALFDKAAEYWKQAIRLAPNN---YIEAQNWLK 162 (172)
T ss_pred HHHHHHHHHHcCChHhHhhCHHHHH-----------------------HHHHHHHHHHHHHHhhCchh---HHHHHHHHH
Confidence 4455555555555444432222211 11577788888888888865 555555555
Q ss_pred hcCC
Q 038200 444 VAGQ 447 (523)
Q Consensus 444 ~~g~ 447 (523)
..|+
T Consensus 163 ~~~~ 166 (172)
T PRK02603 163 TTGR 166 (172)
T ss_pred hcCc
Confidence 5554
No 172
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.72 E-value=0.00028 Score=51.87 Aligned_cols=80 Identities=14% Similarity=0.015 Sum_probs=68.3
Q ss_pred HHHHHHHHHhCCCchHHHHHHHHHHHCCC-CCCcccHHHHHHHHHccC--------CchHHHHHHHHHHHhCCCCCchHH
Q 038200 55 VNAVIKAYSNSCVPDQGVVFYLQMIKNGF-MPNSYTFVSLFGSCAKTG--------CVERGGMCHGLALKNGVDFELPVM 125 (523)
Q Consensus 55 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~-~p~~~~~~~ll~~~~~~~--------~~~~a~~~~~~~~~~~~~~~~~~~ 125 (523)
-...|..+...+++.....+|+.+++.|+ -|+..+|+.++.+.++.. +.-..+.+|+.|+..+++|+..+|
T Consensus 28 ~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etY 107 (120)
T PF08579_consen 28 QIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETY 107 (120)
T ss_pred HHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHH
Confidence 34566777778999999999999999999 899999999999988653 234567889999999999999999
Q ss_pred HHHHHHHHc
Q 038200 126 NSLINMYGC 134 (523)
Q Consensus 126 ~~l~~~~~~ 134 (523)
+.++..+.+
T Consensus 108 nivl~~Llk 116 (120)
T PF08579_consen 108 NIVLGSLLK 116 (120)
T ss_pred HHHHHHHHH
Confidence 999988764
No 173
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.72 E-value=4.4e-05 Score=42.81 Aligned_cols=29 Identities=41% Similarity=0.704 Sum_probs=19.5
Q ss_pred HHHHHHHHHHhcCCchHHHHHHHHHHHCC
Q 038200 186 SWNIMISGYSKSGNPGCSLKLFREMMKSG 214 (523)
Q Consensus 186 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~ 214 (523)
+|+.++++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 56666666666666666666666666655
No 174
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.70 E-value=0.00068 Score=51.94 Aligned_cols=90 Identities=17% Similarity=0.035 Sum_probs=56.3
Q ss_pred HHHHHHcCCChHHHHHHHHhCCCCCCCCCch--HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCC---ChhhHHHHHHH
Q 038200 367 MANLYAGAELTEEAEEILRKMPEDNDNMSFE--SIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQ---DFSRYQFLLNV 441 (523)
Q Consensus 367 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~---~~~~~~~l~~~ 441 (523)
+..++-..|+.++|+.+|++..+.+ .... ...+..+...+...|++++|..+++......|+ +......++.+
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~g--L~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~ 84 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAG--LSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALA 84 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcC--CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHH
Confidence 4455666777777777777766432 2222 334555566677777777777777777766565 44455556666
Q ss_pred HHhcCChhHHHHHHHHH
Q 038200 442 YAVAGQWEDVARVRELM 458 (523)
Q Consensus 442 ~~~~g~~~~A~~~~~~m 458 (523)
+...|+.++|++.+-..
T Consensus 85 L~~~gr~~eAl~~~l~~ 101 (120)
T PF12688_consen 85 LYNLGRPKEALEWLLEA 101 (120)
T ss_pred HHHCCCHHHHHHHHHHH
Confidence 77777777777665543
No 175
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.66 E-value=0.00071 Score=61.39 Aligned_cols=131 Identities=14% Similarity=0.178 Sum_probs=104.0
Q ss_pred HHHHHHHHHHhhcCcHHHHHHHHHHhhHhcCCCCChHHHHHHHHHHHc-CCChHHHHHHHHhCCCCCCCCCchHHHHHHH
Q 038200 326 ITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAG-AELTEEAEEILRKMPEDNDNMSFESIMWVSL 404 (523)
Q Consensus 326 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l 404 (523)
.+|..++..+-+.+..+.|..+|.++.+. -..+...|......-.. .++.+.|.++|+...+. +..+...|...
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~--~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~---f~~~~~~~~~Y 76 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKD--KRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK---FPSDPDFWLEY 76 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCC--CCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH---HTT-HHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH---CCCCHHHHHHH
Confidence 46888889999999999999999999863 33455666666666344 56777799999999865 67778889999
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhcCCCCh---hhHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 038200 405 LSLCRFQGAVAMVERLAKSFVDMDPQDF---SRYQFLLNVYAVAGQWEDVARVRELMKKR 461 (523)
Q Consensus 405 ~~~~~~~g~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 461 (523)
+..+...|+.+.|..+|++++..-|.+. .+|...+..=.+.|+.+.+.++.+++.+.
T Consensus 77 ~~~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 77 LDFLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHHHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHHHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 9999999999999999999998655433 58889999999999999999999998775
No 176
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.66 E-value=0.00083 Score=49.46 Aligned_cols=80 Identities=14% Similarity=0.101 Sum_probs=67.0
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHHHCCC-CCCHHHHHHHHHHHhccc--------cHHHHHHHHHHHHHcCCCCchHHH
Q 038200 187 WNIMISGYSKSGNPGCSLKLFREMMKSGF-RGNDKTMASVLTACGRSA--------RFNEGRSVHGYTVRTSLKPNIILD 257 (523)
Q Consensus 187 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~-~p~~~~~~~ll~~~~~~~--------~~~~a~~~~~~~~~~~~~~~~~~~ 257 (523)
-...|..+...+++.....+|+.+...|+ .|+..+|+.++.+.++.. ++-....+|+.|...++.|+..+|
T Consensus 28 ~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etY 107 (120)
T PF08579_consen 28 QIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETY 107 (120)
T ss_pred HHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHH
Confidence 34556667777999999999999999999 899999999999876653 345677889999999999999999
Q ss_pred HHHhhhhhh
Q 038200 258 TALIDLYSK 266 (523)
Q Consensus 258 ~~l~~~~~~ 266 (523)
+.++..+.+
T Consensus 108 nivl~~Llk 116 (120)
T PF08579_consen 108 NIVLGSLLK 116 (120)
T ss_pred HHHHHHHHH
Confidence 999887765
No 177
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.66 E-value=8.5e-05 Score=51.05 Aligned_cols=53 Identities=19% Similarity=0.265 Sum_probs=40.8
Q ss_pred HhcCCHHHHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 038200 409 RFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKR 461 (523)
Q Consensus 409 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 461 (523)
...|++++|.+.++++.+.+|+++.++..++.+|.+.|++++|..+++++...
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ 54 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 35677888888888888888888888888888888888888888888776554
No 178
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.65 E-value=0.045 Score=49.92 Aligned_cols=253 Identities=13% Similarity=0.114 Sum_probs=151.1
Q ss_pred HhcCCchHHHHHHHHHHHCCCCCCHH--HHHHHHHHHhccccHHHHHHHHHHHHHcCCCCchHHHHHHhhhhhhcCChHH
Q 038200 195 SKSGNPGCSLKLFREMMKSGFRGNDK--TMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEV 272 (523)
Q Consensus 195 ~~~~~~~~a~~~~~~m~~~~~~p~~~--~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 272 (523)
.-.|+++.|.+-|+.|... |... ....|.-...+.|+.+.|.++-+.....-.. -.....+.++..+..|+++.
T Consensus 131 l~eG~~~~Ar~kfeAMl~d---PEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~-l~WA~~AtLe~r~~~gdWd~ 206 (531)
T COG3898 131 LLEGDYEDARKKFEAMLDD---PETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQ-LPWAARATLEARCAAGDWDG 206 (531)
T ss_pred HhcCchHHHHHHHHHHhcC---hHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccC-CchHHHHHHHHHHhcCChHH
Confidence 3457777777777777652 2221 1222222334567777777666666554321 24455666777777777777
Q ss_pred HHHHHHhcCC-----CChH--HHHHHHHHHH---hcCChHHHHHHHHHHHhCCCCCCCcCCCHH-HHHHHHHHHhhcCcH
Q 038200 273 AQRVFDSMAD-----RNLV--CWNAMILGHC---IHGKPEEGIKLFTALVNGTVAGGSISPDEI-TFIGVICACVRAELL 341 (523)
Q Consensus 273 a~~~~~~~~~-----~~~~--~~~~li~~~~---~~g~~~~a~~~~~~m~~~~~~~~~~~p~~~-~~~~ll~~~~~~~~~ 341 (523)
|+++++.-.. ++.. .-..|+.+-. -.-+...|...-.+..+ ..||.. .-.....++.+.|+.
T Consensus 207 AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~K-------L~pdlvPaav~AAralf~d~~~ 279 (531)
T COG3898 207 ALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANK-------LAPDLVPAAVVAARALFRDGNL 279 (531)
T ss_pred HHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhh-------cCCccchHHHHHHHHHHhccch
Confidence 7777765432 3332 1112222111 12245556665555555 557643 334445678899999
Q ss_pred HHHHHHHHHhhHhcCCCCChHHHHHHHHHHHcCCChHHHHHHHHhCCCCCCCCC-chHHHHHHHHHHHHhcCCHHHHHHH
Q 038200 342 TEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMS-FESIMWVSLLSLCRFQGAVAMVERL 420 (523)
Q Consensus 342 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~ 420 (523)
.++-.+++.+-+. .|.+..+. ...+.+.|+.. +.-+++..... ..+ .+......+..+....|++..|..-
T Consensus 280 rKg~~ilE~aWK~---ePHP~ia~--lY~~ar~gdta--~dRlkRa~~L~-slk~nnaes~~~va~aAlda~e~~~ARa~ 351 (531)
T COG3898 280 RKGSKILETAWKA---EPHPDIAL--LYVRARSGDTA--LDRLKRAKKLE-SLKPNNAESSLAVAEAALDAGEFSAARAK 351 (531)
T ss_pred hhhhhHHHHHHhc---CCChHHHH--HHHHhcCCCcH--HHHHHHHHHHH-hcCccchHHHHHHHHHHHhccchHHHHHH
Confidence 9999999999774 45555443 33345556532 22222211100 023 3456666777788889999999999
Q ss_pred HHHHhhcCCCChhhHHHHHHHHHhc-CChhHHHHHHHHHHhCCCccCCce
Q 038200 421 AKSFVDMDPQDFSRYQFLLNVYAVA-GQWEDVARVRELMKKRRMGRMPGC 469 (523)
Q Consensus 421 ~~~~~~~~p~~~~~~~~l~~~~~~~-g~~~~A~~~~~~m~~~~~~~~~~~ 469 (523)
.+.+....|. .++|..|.++-... |+-.++...+-+..+. +.+|.+
T Consensus 352 Aeaa~r~~pr-es~~lLlAdIeeAetGDqg~vR~wlAqav~A--PrdPaW 398 (531)
T COG3898 352 AEAAAREAPR-ESAYLLLADIEEAETGDQGKVRQWLAQAVKA--PRDPAW 398 (531)
T ss_pred HHHHhhhCch-hhHHHHHHHHHhhccCchHHHHHHHHHHhcC--CCCCcc
Confidence 9999989884 46888888887655 9988888888777553 555654
No 179
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.65 E-value=0.078 Score=52.60 Aligned_cols=355 Identities=12% Similarity=0.098 Sum_probs=202.4
Q ss_pred HHHhCCCchHHHHHHHHHH--------HCCCCCCcccHHH-----HHHHHHccCCchHHHHHHHHHHHhCCCCCchHHHH
Q 038200 61 AYSNSCVPDQGVVFYLQMI--------KNGFMPNSYTFVS-----LFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNS 127 (523)
Q Consensus 61 ~~~~~~~~~~a~~~~~~m~--------~~~~~p~~~~~~~-----ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 127 (523)
++.+..++++-+.+.+.++ .-|++.+..-|.. ++.-+...+.+..|.++-..+...-.. ...+|..
T Consensus 398 ~~l~~~~~d~~~~v~~~lrVln~~r~~~~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~-~~~Vl~~ 476 (829)
T KOG2280|consen 398 ASLRTPNPDEYMRVCRELRVLNALRDVRIGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQ-GDRVLLE 476 (829)
T ss_pred cccccCChHHHHHHHHHHHHHhhhcccccCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCcccc-ccHHHHH
Confidence 3445566666655554433 3456665554443 455566777888888887666322111 2567777
Q ss_pred HHHHHHccC---ChHHHHHHHhhcCC--CCcchHHHHHHHHHhcCCHHHHHHHHhcCCCC--------ChhHHHHHHHHH
Q 038200 128 LINMYGCFG---AMDCARNMFVQMSP--RDLISWNSIVSGHVRSGDMSAAHELFDIMPER--------NVVSWNIMISGY 194 (523)
Q Consensus 128 l~~~~~~~g---~~~~A~~~~~~~~~--~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--------~~~~~~~li~~~ 194 (523)
...-+.+.. +-+.+..+-+++.. ....+|..+...--.+|+.+.|..+++.=+.. +..-+...+.-+
T Consensus 477 Wa~~kI~~~d~~d~~vld~I~~kls~~~~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~ka 556 (829)
T KOG2280|consen 477 WARRKIKQSDKMDEEVLDKIDEKLSAKLTPGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKA 556 (829)
T ss_pred HHHHHHhccCccchHHHHHHHHHhcccCCCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHH
Confidence 777777653 33344444455544 45677888887777889999998888765531 222344455556
Q ss_pred HhcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHcCCCCchHHHHHHhhhhhhcCChHHHH
Q 038200 195 SKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQ 274 (523)
Q Consensus 195 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 274 (523)
...|+.+-...++-.+.+. .+...|...+ .+.-.|..+|.+..+..-.. .|-+.|-...+...+-
T Consensus 557 ies~d~~Li~~Vllhlk~~---~~~s~l~~~l------~~~p~a~~lY~~~~r~~~~~------~l~d~y~q~dn~~~~a 621 (829)
T KOG2280|consen 557 IESGDTDLIIQVLLHLKNK---LNRSSLFMTL------RNQPLALSLYRQFMRHQDRA------TLYDFYNQDDNHQALA 621 (829)
T ss_pred HhcCCchhHHHHHHHHHHH---HHHHHHHHHH------HhchhhhHHHHHHHHhhchh------hhhhhhhcccchhhhh
Confidence 6677777776666666543 1222222222 23344555665555432111 1112222222222111
Q ss_pred HH-HHhc-----CCCChHHHHHHHHHHHhcCC----------hHHHHHHHHHHHhCCCCCCCcCCCHHHHHHHHHHHhhc
Q 038200 275 RV-FDSM-----ADRNLVCWNAMILGHCIHGK----------PEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRA 338 (523)
Q Consensus 275 ~~-~~~~-----~~~~~~~~~~li~~~~~~g~----------~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~ll~~~~~~ 338 (523)
.+ ++.. .++-..........+.+... ..+-+.+.+.+...- +..-...+.+--+.-+...
T Consensus 622 ~~~~q~~~~~~~~~~r~~~lk~~a~~~a~sk~~s~e~ka~ed~~kLl~lQ~~Le~q~----~~~f~dlSl~dTv~~li~~ 697 (829)
T KOG2280|consen 622 SFHLQASYAAETIEGRIPALKTAANAFAKSKEKSFEAKALEDQMKLLKLQRTLEDQF----GGSFVDLSLHDTVTTLILI 697 (829)
T ss_pred hhhhhhhhhhhhhcccchhHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHh----ccccccCcHHHHHHHHHHc
Confidence 11 1110 01111111222233333322 122223333333321 0223334555566667778
Q ss_pred CcHHHHHHHHHHhhHhcCCCCChHHHHHHHHHHHcCCChHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHhcCCHHHHH
Q 038200 339 ELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVE 418 (523)
Q Consensus 339 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 418 (523)
|+..+|.++-.+.+- ||...|..-+.+++..+++++-+++-+.... . .-|..+..+|.+.|+.++|.
T Consensus 698 g~~k~a~ql~~~Fki-----pdKr~~wLk~~aLa~~~kweeLekfAkskks-P-------IGy~PFVe~c~~~~n~~EA~ 764 (829)
T KOG2280|consen 698 GQNKRAEQLKSDFKI-----PDKRLWWLKLTALADIKKWEELEKFAKSKKS-P-------IGYLPFVEACLKQGNKDEAK 764 (829)
T ss_pred cchHHHHHHHHhcCC-----cchhhHHHHHHHHHhhhhHHHHHHHHhccCC-C-------CCchhHHHHHHhcccHHHHh
Confidence 999898887776643 7888999999999999999999888887772 2 34556788899999999999
Q ss_pred HHHHHHhhcCCCChhhHHHHHHHHHhcCChhHHHHHHH
Q 038200 419 RLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRE 456 (523)
Q Consensus 419 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 456 (523)
.++-+... +.....+|.+.|++.+|.++.-
T Consensus 765 KYiprv~~--------l~ekv~ay~~~~~~~eAad~A~ 794 (829)
T KOG2280|consen 765 KYIPRVGG--------LQEKVKAYLRVGDVKEAADLAA 794 (829)
T ss_pred hhhhccCC--------hHHHHHHHHHhccHHHHHHHHH
Confidence 98776432 2267889999999999987644
No 180
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.61 E-value=0.00023 Score=64.51 Aligned_cols=135 Identities=10% Similarity=-0.023 Sum_probs=95.6
Q ss_pred HHHHHHHHHHhhcCcHHHHHHHHHHh---hHhcCCCC-ChHHHHHHHHHHHcCCChHHHHHHHHhCCCCC---CCCCchH
Q 038200 326 ITFIGVICACVRAELLTEGRKYFRQM---IDFYKIKP-NFAHYWCMANLYAGAELTEEAEEILRKMPEDN---DNMSFES 398 (523)
Q Consensus 326 ~~~~~ll~~~~~~~~~~~a~~~~~~~---~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~ 398 (523)
..|..|...|.-.|+++.|+...+.- .+.||-+. ....+..|..++.-.|+++.|.+.|+...... ..-....
T Consensus 196 Ra~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEA 275 (639)
T KOG1130|consen 196 RAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEA 275 (639)
T ss_pred chhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHH
Confidence 35666777777778999998766542 23345433 24567788999999999999999887643110 0123345
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhc----C--CCChhhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 038200 399 IMWVSLLSLCRFQGAVAMVERLAKSFVDM----D--PQDFSRYQFLLNVYAVAGQWEDVARVRELMKK 460 (523)
Q Consensus 399 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 460 (523)
....+|...|.-..+++.|+.++.+-+.+ + .....++.+|+.+|...|..++|+.+.+.-.+
T Consensus 276 QscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 276 QSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 66777888888888899999888765542 2 12466899999999999999999987775544
No 181
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.61 E-value=0.00027 Score=49.35 Aligned_cols=57 Identities=12% Similarity=0.087 Sum_probs=47.7
Q ss_pred HHHHhcCCHHHHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 038200 406 SLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRR 462 (523)
Q Consensus 406 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 462 (523)
..+...++++.|..+++.+++++|+++..+...+.+|.+.|++++|...+++..+.+
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~ 59 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELS 59 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHC
Confidence 457788888888888888888888888888888888888888888888888887653
No 182
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.58 E-value=0.013 Score=47.48 Aligned_cols=128 Identities=12% Similarity=0.061 Sum_probs=72.9
Q ss_pred CCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHcCCCCchHHHHHHhhhhhhcCChHHHHHHHHhcCC-----CChHHHH
Q 038200 215 FRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMAD-----RNLVCWN 289 (523)
Q Consensus 215 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~ 289 (523)
+.|+...-..+..++...|+..+|...|++....-+.-|..+.-.+.++....+++..|...++++-+ +.+.+..
T Consensus 85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~L 164 (251)
T COG4700 85 IAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHL 164 (251)
T ss_pred hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchH
Confidence 34555555666666666777777777776666554455566666666666666666666666666543 1223344
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcCCCHHHHHHHHHHHhhcCcHHHHHHHHH
Q 038200 290 AMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFR 349 (523)
Q Consensus 290 ~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 349 (523)
.+...|...|.+..|...|+..... -|+...-......+.++|+.+++..-+.
T Consensus 165 l~aR~laa~g~~a~Aesafe~a~~~-------ypg~~ar~~Y~e~La~qgr~~ea~aq~~ 217 (251)
T COG4700 165 LFARTLAAQGKYADAESAFEVAISY-------YPGPQARIYYAEMLAKQGRLREANAQYV 217 (251)
T ss_pred HHHHHHHhcCCchhHHHHHHHHHHh-------CCCHHHHHHHHHHHHHhcchhHHHHHHH
Confidence 4555666666666666666666663 3544433333334455555554443333
No 183
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.57 E-value=0.00031 Score=50.62 Aligned_cols=77 Identities=18% Similarity=0.253 Sum_probs=34.7
Q ss_pred cCChHHHHHHHHHHHhCCCCCCCcCC---CHHHHHHHHHHHhhcCcHHHHHHHHHHhhHhcCCCC-ChHHHHHHHHHHHc
Q 038200 298 HGKPEEGIKLFTALVNGTVAGGSISP---DEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKP-NFAHYWCMANLYAG 373 (523)
Q Consensus 298 ~g~~~~a~~~~~~m~~~~~~~~~~~p---~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~ 373 (523)
.|+++.|+.+++++.+.. | +...+..+..++.+.|++++|..++++ .+ ..| +......+..++.+
T Consensus 2 ~~~y~~Ai~~~~k~~~~~-------~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~---~~~~~~~~~~l~a~~~~~ 70 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELD-------PTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LK---LDPSNPDIHYLLARCLLK 70 (84)
T ss_dssp TT-HHHHHHHHHHHHHHH-------CGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HT---HHHCHHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHHC-------CCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hC---CCCCCHHHHHHHHHHHHH
Confidence 345555555555555532 3 222333345555555555555555555 11 111 12333334555555
Q ss_pred CCChHHHHHHHH
Q 038200 374 AELTEEAEEILR 385 (523)
Q Consensus 374 ~g~~~~A~~~~~ 385 (523)
.|++++|+++++
T Consensus 71 l~~y~eAi~~l~ 82 (84)
T PF12895_consen 71 LGKYEEAIKALE 82 (84)
T ss_dssp TT-HHHHHHHHH
T ss_pred hCCHHHHHHHHh
Confidence 555555555554
No 184
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.57 E-value=0.00038 Score=58.03 Aligned_cols=99 Identities=12% Similarity=0.013 Sum_probs=82.2
Q ss_pred hHHHHhccC--CCCCcccHHHHHHHHHhC-----CCchHHHHHHHHHHHCCCCCCcccHHHHHHHHHccC----------
Q 038200 39 YTVLVFKCI--NNPGTFCVNAVIKAYSNS-----CVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTG---------- 101 (523)
Q Consensus 39 ~A~~~~~~~--~~~~~~~~~~ll~~~~~~-----~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~---------- 101 (523)
--...|+.. ..++..+|..+++.|.+. |..+-....+..|.+.|+.-|..+|+.|++.+=+..
T Consensus 32 ~~~~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~ 111 (228)
T PF06239_consen 32 PHEELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAE 111 (228)
T ss_pred chHHHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHH
Confidence 345566665 468888999999998754 677777788899999999999999999999986532
Q ss_pred ------CchHHHHHHHHHHHhCCCCCchHHHHHHHHHHccCC
Q 038200 102 ------CVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGA 137 (523)
Q Consensus 102 ------~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 137 (523)
+-+-|++++++|...|+.||..++..|++.+++.+.
T Consensus 112 F~hyp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 112 FMHYPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred hccCcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 336789999999999999999999999999987664
No 185
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.57 E-value=0.019 Score=50.77 Aligned_cols=79 Identities=6% Similarity=-0.146 Sum_probs=53.0
Q ss_pred CcccHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCccc----HHHHHHHHHccCCchHHHHHHHHHHHhCCCCCchHHH
Q 038200 51 GTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYT----FVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMN 126 (523)
Q Consensus 51 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~----~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 126 (523)
+...+-.....+.+.|++++|++.|+.+... .|+... .-.+..++.+.+++++|...+++.++.-+.-...-+.
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~--yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a 108 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNR--YPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYV 108 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHH
Confidence 3333444556667789999999999999885 344432 2345677788999999999999998875543333333
Q ss_pred HHHHH
Q 038200 127 SLINM 131 (523)
Q Consensus 127 ~l~~~ 131 (523)
..+.+
T Consensus 109 ~Y~~g 113 (243)
T PRK10866 109 LYMRG 113 (243)
T ss_pred HHHHH
Confidence 33333
No 186
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=97.56 E-value=0.069 Score=49.72 Aligned_cols=406 Identities=11% Similarity=0.046 Sum_probs=227.5
Q ss_pred HHHhccCC--CCCcccHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCcccHHHHHHHHHccCCchHHHHHHHHHHHhCC
Q 038200 41 VLVFKCIN--NPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGV 118 (523)
Q Consensus 41 ~~~~~~~~--~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 118 (523)
+++-++++ +.|..+|-.|+.-+...+.+++..+++++|..- ++--...|..-+.+=....+++.+..+|.+.+...+
T Consensus 29 lrLRerIkdNPtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~p-fp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~l 107 (660)
T COG5107 29 LRLRERIKDNPTNILSYFQLIQYLETQESMDAEREMYEQLSSP-FPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKSL 107 (660)
T ss_pred HHHHHHhhcCchhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCC-CccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhhc
Confidence 46666766 357889999999999999999999999999853 344455777778777777899999999999988744
Q ss_pred CCCchHHHHHHHHHHccCC---------hHHHHHHHhh-cC-C-CCcchHHHHHHHHH---------hcCCHHHHHHHHh
Q 038200 119 DFELPVMNSLINMYGCFGA---------MDCARNMFVQ-MS-P-RDLISWNSIVSGHV---------RSGDMSAAHELFD 177 (523)
Q Consensus 119 ~~~~~~~~~l~~~~~~~g~---------~~~A~~~~~~-~~-~-~~~~~~~~ll~~~~---------~~~~~~~a~~~~~ 177 (523)
+...|...+.--.+... +-+|-++.-. .. + .....|+..+..+- .+.+++.....+.
T Consensus 108 --~ldLW~lYl~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid~iR~~Y~ 185 (660)
T COG5107 108 --NLDLWMLYLEYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRIDKIRNGYM 185 (660)
T ss_pred --cHhHHHHHHHHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHHHHHHHHHH
Confidence 46666666664443321 1222222211 11 2 24445555444321 2344555666676
Q ss_pred cCCC-C---------ChhHHHHHHHHH-----H--hcCCchHHHHHHHHHHH--CCCC----CCHHHHHHHHH-------
Q 038200 178 IMPE-R---------NVVSWNIMISGY-----S--KSGNPGCSLKLFREMMK--SGFR----GNDKTMASVLT------- 227 (523)
Q Consensus 178 ~~~~-~---------~~~~~~~li~~~-----~--~~~~~~~a~~~~~~m~~--~~~~----p~~~~~~~ll~------- 227 (523)
++.. | |-..|..=++.. + ..--+-.|...++++.. .|.. .+..+++.+-+
T Consensus 186 ral~tP~~nleklW~dy~~fE~e~N~~TarKfvge~sp~ym~ar~~yqe~~nlt~Gl~v~~~~~~Rt~nK~~r~s~S~Wl 265 (660)
T COG5107 186 RALQTPMGNLEKLWKDYENFELELNKITARKFVGETSPIYMSARQRYQEIQNLTRGLSVKNPINLRTANKAARTSDSNWL 265 (660)
T ss_pred HHHcCccccHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHhccccccCchhhhhhccccccccchhh
Confidence 6654 1 112222111111 1 01123455566666543 2321 12333333222
Q ss_pred ----HHhc-----ccc--HHHHHHHHHHHHHcCCCCchHHHHHHhhhhhhcCChHHHHHHHHhcCC--CCh---------
Q 038200 228 ----ACGR-----SAR--FNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMAD--RNL--------- 285 (523)
Q Consensus 228 ----~~~~-----~~~--~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~--------- 285 (523)
--.. .|+ .....-++++.... +.....+|---...+...++-+.|+...+.-.+ |+.
T Consensus 266 NwIkwE~en~l~L~~~~~~qRi~y~~~q~~~y-~~~~~evw~dys~Y~~~isd~q~al~tv~rg~~~spsL~~~lse~ye 344 (660)
T COG5107 266 NWIKWEMENGLKLGGRPHEQRIHYIHNQILDY-FYYAEEVWFDYSEYLIGISDKQKALKTVERGIEMSPSLTMFLSEYYE 344 (660)
T ss_pred hHhhHhhcCCcccCCCcHHHHHHHHHHHHHHH-hhhhHHHHHHHHHHHhhccHHHHHHHHHHhcccCCCchheeHHHHHh
Confidence 0000 011 01111122222222 122333333333344456677788877766543 221
Q ss_pred ------H---HHHHHHHHHHh---cCChHHHHHH------HHHHHhCCCCCCCcCCCHHHHHHHHHHHhhcCcHHHHHHH
Q 038200 286 ------V---CWNAMILGHCI---HGKPEEGIKL------FTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKY 347 (523)
Q Consensus 286 ------~---~~~~li~~~~~---~g~~~~a~~~------~~~m~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~ 347 (523)
. +|..++..+.+ .++.+.+... ..++.-.. ..--...|...+....+..-++.|..+
T Consensus 345 l~nd~e~v~~~fdk~~q~L~r~ys~~~s~~~s~~D~N~e~~~Ell~kr-----~~k~t~v~C~~~N~v~r~~Gl~aaR~~ 419 (660)
T COG5107 345 LVNDEEAVYGCFDKCTQDLKRKYSMGESESASKVDNNFEYSKELLLKR-----INKLTFVFCVHLNYVLRKRGLEAARKL 419 (660)
T ss_pred hcccHHHHhhhHHHHHHHHHHHHhhhhhhhhccccCCccccHHHHHHH-----HhhhhhHHHHHHHHHHHHhhHHHHHHH
Confidence 0 12222222111 1111111110 01110000 111234567778877888889999999
Q ss_pred HHHhhHhcC-CCCChHHHHHHHHHHHcCCChHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 038200 348 FRQMIDFYK-IKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVD 426 (523)
Q Consensus 348 ~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 426 (523)
|-++.+. + +.+++..+++++..++ .|+..-|..+|+--... ++.+..-....+..+...++-+.|..+|+..++
T Consensus 420 F~k~rk~-~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~---f~d~~~y~~kyl~fLi~inde~naraLFetsv~ 494 (660)
T COG5107 420 FIKLRKE-GIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK---FPDSTLYKEKYLLFLIRINDEENARALFETSVE 494 (660)
T ss_pred HHHHhcc-CCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh---CCCchHHHHHHHHHHHHhCcHHHHHHHHHHhHH
Confidence 9999987 6 6788999999988776 57889999999876643 333344445566677888999999999997765
Q ss_pred cCCC--ChhhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 038200 427 MDPQ--DFSRYQFLLNVYAVAGQWEDVARVRELMKK 460 (523)
Q Consensus 427 ~~p~--~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 460 (523)
.-.. -..+|..++.--..-|+...|..+=++|..
T Consensus 495 r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e 530 (660)
T COG5107 495 RLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRE 530 (660)
T ss_pred HHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHH
Confidence 2221 245788888888888888777766665543
No 187
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.54 E-value=0.1 Score=51.26 Aligned_cols=245 Identities=9% Similarity=-0.014 Sum_probs=119.8
Q ss_pred chhHHHHhccCCCCCcccHHHHHHHHHhCCCchHHHHHHHHHHHC-CCCCCcc--------cHHHHHHHHHccCCchHHH
Q 038200 37 PDYTVLVFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKN-GFMPNSY--------TFVSLFGSCAKTGCVERGG 107 (523)
Q Consensus 37 ~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~-~~~p~~~--------~~~~ll~~~~~~~~~~~a~ 107 (523)
+++|.++.+.- |....|..+.......-.++.|...|-+.... |++.-.. .-..=+.+ --|++++|.
T Consensus 679 ledA~qfiEdn--PHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~--~~g~feeae 754 (1189)
T KOG2041|consen 679 LEDAIQFIEDN--PHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISA--FYGEFEEAE 754 (1189)
T ss_pred hHHHHHHHhcC--CchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhh--hhcchhHhh
Confidence 45555555443 33355665555555555555555555444321 2211000 00001111 125666666
Q ss_pred HHHHHHHHhCCCCCchHHHHHHHHHHccCChHHHHHHHhhcCCC-----CcchHHHHHHHHHhcCCHHHHHHHHhcCCCC
Q 038200 108 MCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPR-----DLISWNSIVSGHVRSGDMSAAHELFDIMPER 182 (523)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 182 (523)
+++-.+-+.. ..+..+.+.|++-.+.++++.-... -...|+.+...++....++.|.+.+..-..
T Consensus 755 k~yld~drrD---------LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~- 824 (1189)
T KOG2041|consen 755 KLYLDADRRD---------LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGD- 824 (1189)
T ss_pred hhhhccchhh---------hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-
Confidence 6655544332 2344555556666555555543321 123555566666666666666655554432
Q ss_pred ChhHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHcCCCCchHHHHHHhh
Q 038200 183 NVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALID 262 (523)
Q Consensus 183 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 262 (523)
. ...+.++.+..++++-..+-.. ++-+....-.+..++.+.|.-++|.+.|-+ .+. |. +.+.
T Consensus 825 -~---e~~~ecly~le~f~~LE~la~~-----Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr---~s~-pk-----aAv~ 886 (1189)
T KOG2041|consen 825 -T---ENQIECLYRLELFGELEVLART-----LPEDSELLPVMADMFTSVGMCDQAVEAYLR---RSL-PK-----AAVH 886 (1189)
T ss_pred -h---HhHHHHHHHHHhhhhHHHHHHh-----cCcccchHHHHHHHHHhhchHHHHHHHHHh---ccC-cH-----HHHH
Confidence 1 1233444444444443333322 334555556667777777777777665532 221 21 2344
Q ss_pred hhhhcCChHHHHHHHHhcCCCChHHHHH--------------HHHHHHhcCChHHHHHHHHHHHh
Q 038200 263 LYSKCQKVEVAQRVFDSMADRNLVCWNA--------------MILGHCIHGKPEEGIKLFTALVN 313 (523)
Q Consensus 263 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~--------------li~~~~~~g~~~~a~~~~~~m~~ 313 (523)
.|...+++.+|.++-++..-|.+.+.-+ -|..+.+.|+.-+|.+++.+|.+
T Consensus 887 tCv~LnQW~~avelaq~~~l~qv~tliak~aaqll~~~~~~eaIe~~Rka~~~~daarll~qmae 951 (1189)
T KOG2041|consen 887 TCVELNQWGEAVELAQRFQLPQVQTLIAKQAAQLLADANHMEAIEKDRKAGRHLDAARLLSQMAE 951 (1189)
T ss_pred HHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhcchHHHHHHhhhcccchhHHHHHHHHhH
Confidence 5666677777777777665444332211 23344556666666666666654
No 188
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.52 E-value=0.0011 Score=62.67 Aligned_cols=96 Identities=13% Similarity=0.028 Sum_probs=50.7
Q ss_pred cHHHHHHHHHhCCCchHHHHHHHHHHHC--CCCCCcccHHHHHHHHHccCCchHHHHHHHHHHHhCCCCCchHHHHHHHH
Q 038200 54 CVNAVIKAYSNSCVPDQGVVFYLQMIKN--GFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINM 131 (523)
Q Consensus 54 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~--~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 131 (523)
....++..+....+.+.+..++.+.+.. ....-..|..++++.|...|..+.++.+++.=...|+-||..++|.||+.
T Consensus 68 dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~Lmd~ 147 (429)
T PF10037_consen 68 DLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLLMDH 147 (429)
T ss_pred HHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHHHHH
Confidence 3344444444444555555555555443 12222334455555555555555555555555555555555555555555
Q ss_pred HHccCChHHHHHHHhhcC
Q 038200 132 YGCFGAMDCARNMFVQMS 149 (523)
Q Consensus 132 ~~~~g~~~~A~~~~~~~~ 149 (523)
+.+.|++..|.++..+|.
T Consensus 148 fl~~~~~~~A~~V~~~~~ 165 (429)
T PF10037_consen 148 FLKKGNYKSAAKVATEMM 165 (429)
T ss_pred HhhcccHHHHHHHHHHHH
Confidence 555555555555555554
No 189
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.51 E-value=0.14 Score=51.93 Aligned_cols=182 Identities=13% Similarity=0.080 Sum_probs=126.7
Q ss_pred HhhccCCchhHHHHhccCC---CCCcccHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCcccHHHHHHHHHccCCchHH
Q 038200 30 HSADFGSPDYTVLVFKCIN---NPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERG 106 (523)
Q Consensus 30 ~~~~~g~~~~A~~~~~~~~---~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a 106 (523)
.+.+.|+.++|..+++... ..|..+...+-..|...+..++|..+|++..+. .|+......+..++.+.+++.+-
T Consensus 52 sl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~q 129 (932)
T KOG2053|consen 52 SLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVHLYERANQK--YPSEELLYHLFMAYVREKSYKKQ 129 (932)
T ss_pred HHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHH
Confidence 4568899999999998764 347778888889999999999999999999985 57788888899999999888766
Q ss_pred HHHHHHHHHhCCCCCchHHHHHHHHHHccC----------ChHHHHHHHhhcCCCC-c-c---hHHHHHHHHHhcCCHHH
Q 038200 107 GMCHGLALKNGVDFELPVMNSLINMYGCFG----------AMDCARNMFVQMSPRD-L-I---SWNSIVSGHVRSGDMSA 171 (523)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g----------~~~~A~~~~~~~~~~~-~-~---~~~~ll~~~~~~~~~~~ 171 (523)
.++--++-+. .+-+...+=++++.+...- -..-|.+.++.+.+.+ . . -.-.-+..+...|++++
T Consensus 130 Qkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~e 208 (932)
T KOG2053|consen 130 QKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQE 208 (932)
T ss_pred HHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHH
Confidence 5554444443 3336666666777665432 1334666666665433 1 1 11222334556788999
Q ss_pred HHHHHhc-----CCCCChhHHHHHHHHHHhcCCchHHHHHHHHHHHCC
Q 038200 172 AHELFDI-----MPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSG 214 (523)
Q Consensus 172 a~~~~~~-----~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~ 214 (523)
|..++.. ....+...-+--+..+...++|.+..++-.++...|
T Consensus 209 al~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~ 256 (932)
T KOG2053|consen 209 ALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKG 256 (932)
T ss_pred HHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhC
Confidence 9998832 222344444455667778888888888888888775
No 190
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.50 E-value=0.00027 Score=48.68 Aligned_cols=67 Identities=18% Similarity=0.103 Sum_probs=51.6
Q ss_pred ChHHHHHHHHHHHcCCChHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHhcC-CHHHHHHHHHHHhhcCC
Q 038200 360 NFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQG-AVAMVERLAKSFVDMDP 429 (523)
Q Consensus 360 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~~p 429 (523)
++..|..+...+...|++++|+..|++.++. .+.+...|..+..++...| ++++|...++++++++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~---~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIEL---DPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH---STTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc---CCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 4567777888888888888888888888753 2335667777777888888 68888888888888776
No 191
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.49 E-value=0.00015 Score=49.78 Aligned_cols=51 Identities=18% Similarity=0.187 Sum_probs=28.4
Q ss_pred hcCcHHHHHHHHHHhhHhcCCCCChHHHHHHHHHHHcCCChHHHHHHHHhCCC
Q 038200 337 RAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPE 389 (523)
Q Consensus 337 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 389 (523)
+.|++++|.++|+++.+. .+-+...+..++.+|.+.|++++|.++++++..
T Consensus 3 ~~~~~~~A~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~ 53 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQR--NPDNPEARLLLAQCYLKQGQYDEAEELLERLLK 53 (68)
T ss_dssp HTTHHHHHHHHHHHHHHH--TTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHG
T ss_pred hccCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 455666666666666552 233455555566666666666666666666653
No 192
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.47 E-value=0.037 Score=50.84 Aligned_cols=268 Identities=12% Similarity=-0.041 Sum_probs=114.5
Q ss_pred HccCCchHHHHHHHHHHHhCCCCCchHHHHHHHHHHccCChHHHHHHHhhcC---CCCcchHHHHHHHHHhcCCHHHHHH
Q 038200 98 AKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMS---PRDLISWNSIVSGHVRSGDMSAAHE 174 (523)
Q Consensus 98 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~ll~~~~~~~~~~~a~~ 174 (523)
.+..++..|+..+...++..+. +..-|..-+..+...|++++|.--.++-. +.....+.-.-.++...++..+|.+
T Consensus 60 yk~k~Y~nal~~yt~Ai~~~pd-~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~~r~~~c~~a~~~~i~A~~ 138 (486)
T KOG0550|consen 60 YKQKTYGNALKNYTFAIDMCPD-NASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQLREGQCHLALSDLIEAEE 138 (486)
T ss_pred HHHhhHHHHHHHHHHHHHhCcc-chhhhchhHHHHHHHHhHhhcccchhhheecCCCccccccchhhhhhhhHHHHHHHH
Confidence 3344555666666666665444 34445445555555555555544333322 1112222223333333444444444
Q ss_pred HHhcCCCCChhHHHHHHHHHHhcCCchHHHHHHHHHHHCCC-CCCHHHHHHH-HHHHhccccHHHHHHHHHHHHHcCCCC
Q 038200 175 LFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGF-RGNDKTMASV-LTACGRSARFNEGRSVHGYTVRTSLKP 252 (523)
Q Consensus 175 ~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~-~p~~~~~~~l-l~~~~~~~~~~~a~~~~~~~~~~~~~~ 252 (523)
.++ +...| ....++..++....... +|...++..+ ..++...|+.+.|.++--...+... .
T Consensus 139 ~~~-----~~~~~-----------~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~-~ 201 (486)
T KOG0550|consen 139 KLK-----SKQAY-----------KAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDA-T 201 (486)
T ss_pred Hhh-----hhhhh-----------HHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhccc-c
Confidence 444 11111 11112222222222111 1333333332 2344566777777666665555431 1
Q ss_pred chHHHHHHhhhhhhcCChHHHHHHHHhcCCCChHH---------------HHHHHHHHHhcCChHHHHHHHHHHHhCCCC
Q 038200 253 NIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVC---------------WNAMILGHCIHGKPEEGIKLFTALVNGTVA 317 (523)
Q Consensus 253 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---------------~~~li~~~~~~g~~~~a~~~~~~m~~~~~~ 317 (523)
+......-..++.-.++.+.+...|++...-++.. |..-..-..+.|++..|.+.|.+.+...
T Consensus 202 n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~id-- 279 (486)
T KOG0550|consen 202 NAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNID-- 279 (486)
T ss_pred hhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCC--
Confidence 22111111223334456677777777665432221 1111222345566666666666665532
Q ss_pred CCCcCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhHhcCCCCC-hHHHHHHHHHHHcCCChHHHHHHHHhCC
Q 038200 318 GGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPN-FAHYWCMANLYAGAELTEEAEEILRKMP 388 (523)
Q Consensus 318 ~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 388 (523)
+.++.|+...|.....+..+.|+.++|+.--+...+. .+. ...|..-..++...++|++|.+-+++..
T Consensus 280 P~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~i---D~syikall~ra~c~l~le~~e~AV~d~~~a~ 348 (486)
T KOG0550|consen 280 PSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKI---DSSYIKALLRRANCHLALEKWEEAVEDYEKAM 348 (486)
T ss_pred ccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhc---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1123333444444444555555555555555554431 111 1111222233334455555555555544
No 193
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.46 E-value=0.0026 Score=50.66 Aligned_cols=92 Identities=11% Similarity=0.071 Sum_probs=47.3
Q ss_pred HHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHcCCCCchHHHHHHhhhhh
Q 038200 186 SWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYS 265 (523)
Q Consensus 186 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 265 (523)
....+...+...|++++|..+|+.+.... +-+...|..|..++...|++++|+..|.......+ -+...+-.+..++.
T Consensus 37 ~lY~~A~~ly~~G~l~~A~~~f~~L~~~D-p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~-ddp~~~~~ag~c~L 114 (157)
T PRK15363 37 TLYRYAMQLMEVKEFAGAARLFQLLTIYD-AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKI-DAPQAPWAAAECYL 114 (157)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCchHHHHHHHHHH
Confidence 33344444555566666666665555532 22334444555555555666666666655555442 24444444555555
Q ss_pred hcCChHHHHHHHHh
Q 038200 266 KCQKVEVAQRVFDS 279 (523)
Q Consensus 266 ~~~~~~~a~~~~~~ 279 (523)
..|+.+.|.+.|+.
T Consensus 115 ~lG~~~~A~~aF~~ 128 (157)
T PRK15363 115 ACDNVCYAIKALKA 128 (157)
T ss_pred HcCCHHHHHHHHHH
Confidence 55555555555543
No 194
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.44 E-value=0.0069 Score=59.81 Aligned_cols=137 Identities=11% Similarity=0.062 Sum_probs=98.1
Q ss_pred cCCCHHHHHHHHHHHhh--c---CcHHHHHHHHHHhhHhcCCCCC-hHHHHHHHHHHHcC--------CChHHHHHHHHh
Q 038200 321 ISPDEITFIGVICACVR--A---ELLTEGRKYFRQMIDFYKIKPN-FAHYWCMANLYAGA--------ELTEEAEEILRK 386 (523)
Q Consensus 321 ~~p~~~~~~~ll~~~~~--~---~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~--------g~~~~A~~~~~~ 386 (523)
.+.+...|...+++... . +....|..+|+++.+. .|+ ...|..+..++... ++...+.+..++
T Consensus 333 ~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l---dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~ 409 (517)
T PRK10153 333 LPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKS---EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDN 409 (517)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHH
Confidence 45677888888887543 2 3478999999999973 555 44555544444221 223455555555
Q ss_pred CCCCCCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 038200 387 MPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRR 462 (523)
Q Consensus 387 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 462 (523)
..... ....+...+..+.......|++++|...++++++++| +...|..++.+|...|+.++|.+.+++..+.+
T Consensus 410 a~al~-~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~ 483 (517)
T PRK10153 410 IVALP-ELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNLR 483 (517)
T ss_pred hhhcc-cCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 43211 1233456677676666778999999999999999999 57899999999999999999999999987654
No 195
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.44 E-value=0.0047 Score=51.41 Aligned_cols=99 Identities=10% Similarity=0.025 Sum_probs=43.5
Q ss_pred HHHHHHHhhcCcHHHHHHHHHHhhHhcCCCC-ChHHHHHHHHHHHcCCChHHHHHHHHhCCCCCCCCCchHHHHHHHHHH
Q 038200 329 IGVICACVRAELLTEGRKYFRQMIDFYKIKP-NFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSL 407 (523)
Q Consensus 329 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~ 407 (523)
..+...+...|++++|...|++......-.+ ...++..+..+|...|++++|++.+++.... .+.....+..+...
T Consensus 39 ~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~---~~~~~~~~~~la~i 115 (168)
T CHL00033 39 YRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALER---NPFLPQALNNMAVI 115 (168)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CcCcHHHHHHHHHH
Confidence 3333444444555555555554443200000 1224444555555555555555555554432 01112223333333
Q ss_pred HH-------hcCCHH-------HHHHHHHHHhhcCCC
Q 038200 408 CR-------FQGAVA-------MVERLAKSFVDMDPQ 430 (523)
Q Consensus 408 ~~-------~~g~~~-------~a~~~~~~~~~~~p~ 430 (523)
+. ..|+++ +|..+++++.+.+|+
T Consensus 116 ~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~ 152 (168)
T CHL00033 116 CHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPG 152 (168)
T ss_pred HHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcc
Confidence 33 455544 555566666666764
No 196
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.43 E-value=0.028 Score=49.77 Aligned_cols=57 Identities=14% Similarity=0.164 Sum_probs=47.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhcCCC---ChhhHHHHHHHHHhcCChhHHHHHHHHHH
Q 038200 403 SLLSLCRFQGAVAMVERLAKSFVDMDPQ---DFSRYQFLLNVYAVAGQWEDVARVRELMK 459 (523)
Q Consensus 403 ~l~~~~~~~g~~~~a~~~~~~~~~~~p~---~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 459 (523)
.+...|.+.|.+..|..-++.+++.-|+ .+++...+..+|...|..++|..+...+.
T Consensus 180 ~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 180 SVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 3455688899999999999999987776 45677788899999999999999887664
No 197
>PRK15331 chaperone protein SicA; Provisional
Probab=97.43 E-value=0.004 Score=49.89 Aligned_cols=92 Identities=13% Similarity=0.119 Sum_probs=78.5
Q ss_pred HHHHHHHcCCChHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhhHHHHHHHHHhc
Q 038200 366 CMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVA 445 (523)
Q Consensus 366 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 445 (523)
....-+...|++++|..+|+-+...+ .-+..-|..|..++...++++.|...|..+..++++||..+...+.+|...
T Consensus 42 ~~Ay~~y~~Gk~~eA~~~F~~L~~~d---~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l 118 (165)
T PRK15331 42 AHAYEFYNQGRLDEAETFFRFLCIYD---FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLM 118 (165)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC---cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHh
Confidence 34455668999999999999877421 334556777777888899999999999999999999999999999999999
Q ss_pred CChhHHHHHHHHHHh
Q 038200 446 GQWEDVARVRELMKK 460 (523)
Q Consensus 446 g~~~~A~~~~~~m~~ 460 (523)
|+.+.|...|+...+
T Consensus 119 ~~~~~A~~~f~~a~~ 133 (165)
T PRK15331 119 RKAAKARQCFELVNE 133 (165)
T ss_pred CCHHHHHHHHHHHHh
Confidence 999999999998866
No 198
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.41 E-value=0.00014 Score=41.51 Aligned_cols=32 Identities=25% Similarity=0.549 Sum_probs=30.3
Q ss_pred HHHHhhcCCCChhhHHHHHHHHHhcCChhHHH
Q 038200 421 AKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVA 452 (523)
Q Consensus 421 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~ 452 (523)
++++++++|+++.+|..|+.+|...|++++|+
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 67899999999999999999999999999986
No 199
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.38 E-value=0.0026 Score=56.65 Aligned_cols=89 Identities=11% Similarity=0.010 Sum_probs=39.9
Q ss_pred HcCCChHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCC---hhhHHHHHHHHHhcCCh
Q 038200 372 AGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQD---FSRYQFLLNVYAVAGQW 448 (523)
Q Consensus 372 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~~~~g~~ 448 (523)
.+.|++++|...|+.++.....-.-....+..+..++...|+++.|...|+.+++..|++ +.++..++.+|...|++
T Consensus 154 ~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g~~ 233 (263)
T PRK10803 154 QDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKGDT 233 (263)
T ss_pred HhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcCCH
Confidence 334555555555555443210000001233344444555555555555555555544432 33334444455555555
Q ss_pred hHHHHHHHHHHh
Q 038200 449 EDVARVRELMKK 460 (523)
Q Consensus 449 ~~A~~~~~~m~~ 460 (523)
++|..+++++.+
T Consensus 234 ~~A~~~~~~vi~ 245 (263)
T PRK10803 234 AKAKAVYQQVIK 245 (263)
T ss_pred HHHHHHHHHHHH
Confidence 555555555543
No 200
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.37 E-value=0.013 Score=50.38 Aligned_cols=130 Identities=15% Similarity=0.081 Sum_probs=92.3
Q ss_pred hHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHcC-----CCCchHHHHH
Q 038200 185 VSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTS-----LKPNIILDTA 259 (523)
Q Consensus 185 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~ 259 (523)
.+.+.++..+.-.+.+.-.+..+++.++...+-++.....+.+.-.+.||.+.|...|+...+.. +.....+...
T Consensus 178 ~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n 257 (366)
T KOG2796|consen 178 RVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMN 257 (366)
T ss_pred HHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhh
Confidence 34456667777778888888888888887666677778888888888899988888888776542 2223333344
Q ss_pred HhhhhhhcCChHHHHHHHHhcCC---CChHHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 038200 260 LIDLYSKCQKVEVAQRVFDSMAD---RNLVCWNAMILGHCIHGKPEEGIKLFTALVNG 314 (523)
Q Consensus 260 l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 314 (523)
....|.-.+++..|...|.++.. .++..-|.-..+..-.|+..+|++.++.|...
T Consensus 258 ~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~ 315 (366)
T KOG2796|consen 258 SAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ 315 (366)
T ss_pred hhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 44556667788888888877765 34455555555555578888888888888873
No 201
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.37 E-value=0.0022 Score=53.59 Aligned_cols=97 Identities=9% Similarity=0.195 Sum_probs=74.6
Q ss_pred HHHHhcC--CCCChhHHHHHHHHHHh-----cCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc-------------
Q 038200 173 HELFDIM--PERNVVSWNIMISGYSK-----SGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRS------------- 232 (523)
Q Consensus 173 ~~~~~~~--~~~~~~~~~~li~~~~~-----~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~------------- 232 (523)
...|+.. ...+..+|..++..|.+ .|..+-....++.|.+-|+.-|..+|+.|++++=+.
T Consensus 34 ~~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~ 113 (228)
T PF06239_consen 34 EELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFM 113 (228)
T ss_pred HHHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhc
Confidence 4455555 34677778777777764 466777777888888889989999999999886542
Q ss_pred ---ccHHHHHHHHHHHHHcCCCCchHHHHHHhhhhhhcCC
Q 038200 233 ---ARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQK 269 (523)
Q Consensus 233 ---~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 269 (523)
.+.+-|.+++++|...|+-||..++..|++.+++.+.
T Consensus 114 hyp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 114 HYPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred cCcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 2456788999999999999999999999998877554
No 202
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=97.37 E-value=0.018 Score=55.77 Aligned_cols=88 Identities=11% Similarity=0.059 Sum_probs=55.6
Q ss_pred HHHHHHHHHHHhhcCcHHHHHHHHHHhhHhcCCCCChHHHHHHHHHHHcCCChHHHHHHHHhCCCCCCCCCchHH-----
Q 038200 325 EITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESI----- 399 (523)
Q Consensus 325 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~----- 399 (523)
..+...+..-+.+...+..|-++|.+|-+ ...+++.....+++++|..+-++..+ +.||..
T Consensus 747 re~l~~~a~ylk~l~~~gLAaeIF~k~gD----------~ksiVqlHve~~~W~eAFalAe~hPe----~~~dVy~pyaq 812 (1081)
T KOG1538|consen 747 REPLLLCATYLKKLDSPGLAAEIFLKMGD----------LKSLVQLHVETQRWDEAFALAEKHPE----FKDDVYMPYAQ 812 (1081)
T ss_pred hhHHHHHHHHHhhccccchHHHHHHHhcc----------HHHHhhheeecccchHhHhhhhhCcc----ccccccchHHH
Confidence 34555555555566677777888887754 23467777888888888888887775 344421
Q ss_pred ------HHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 038200 400 ------MWVSLLSLCRFQGAVAMVERLAKSFVD 426 (523)
Q Consensus 400 ------~~~~l~~~~~~~g~~~~a~~~~~~~~~ 426 (523)
-|...-.+|.+.|+..+|.++++++..
T Consensus 813 wLAE~DrFeEAqkAfhkAGr~~EA~~vLeQLtn 845 (1081)
T KOG1538|consen 813 WLAENDRFEEAQKAFHKAGRQREAVQVLEQLTN 845 (1081)
T ss_pred HhhhhhhHHHHHHHHHHhcchHHHHHHHHHhhh
Confidence 122233456666777777777776654
No 203
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.35 E-value=0.00091 Score=60.81 Aligned_cols=271 Identities=13% Similarity=0.026 Sum_probs=150.2
Q ss_pred HHHHhCCCchHHHHHHHHHHHCCCCCCcc----cHHHHHHHHHccCCchHHHHHHHHHH--H--hCCC-CCchHHHHHHH
Q 038200 60 KAYSNSCVPDQGVVFYLQMIKNGFMPNSY----TFVSLFGSCAKTGCVERGGMCHGLAL--K--NGVD-FELPVMNSLIN 130 (523)
Q Consensus 60 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~----~~~~ll~~~~~~~~~~~a~~~~~~~~--~--~~~~-~~~~~~~~l~~ 130 (523)
.-+++.|+....+.+|+..++.| .-|.. .|.-|.++|.-.+++++|++++..=+ . .|-+ -.......|.+
T Consensus 25 ERLck~gdcraGv~ff~aA~qvG-TeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGN 103 (639)
T KOG1130|consen 25 ERLCKMGDCRAGVDFFKAALQVG-TEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGN 103 (639)
T ss_pred HHHHhccchhhhHHHHHHHHHhc-chHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccc
Confidence 34788899999999999888876 33333 45556666666677777777654321 1 1100 01122233334
Q ss_pred HHHccCChHHHHHHHhhcCCCCcchHHHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHhcCC-----------
Q 038200 131 MYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGN----------- 199 (523)
Q Consensus 131 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~----------- 199 (523)
.+--.|.+++|...-.+ .++-|.++=+++. ....+..+...|...|+
T Consensus 104 tlKv~G~fdeA~~cc~r--------------------hLd~areLgDrv~--e~RAlYNlgnvYhakGk~~g~~~pee~g 161 (639)
T KOG1130|consen 104 TLKVKGAFDEALTCCFR--------------------HLDFARELGDRVL--ESRALYNLGNVYHAKGKCTGLEAPEEKG 161 (639)
T ss_pred hhhhhcccchHHHHHHH--------------------HhHHHHHHhHHHh--hhHHHhhhhhhhhhcccccCCCChhhcc
Confidence 44444555555433211 1111111111111 11222223333332221
Q ss_pred ---------chHHHHHHHHH----HHCCCC-CCHHHHHHHHHHHhccccHHHHHHHHHHHHH----cCCC-CchHHHHHH
Q 038200 200 ---------PGCSLKLFREM----MKSGFR-GNDKTMASVLTACGRSARFNEGRSVHGYTVR----TSLK-PNIILDTAL 260 (523)
Q Consensus 200 ---------~~~a~~~~~~m----~~~~~~-p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~----~~~~-~~~~~~~~l 260 (523)
++.|.++|.+= .+.|-. .--..|..|.+.|.-.|+++.|+..++.-+. -|-. .....+..|
T Consensus 162 ~f~~ev~~al~~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNl 241 (639)
T KOG1130|consen 162 AFNAEVTSALENAVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNL 241 (639)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhccc
Confidence 22334444322 121100 1123566677777778899999887765433 2221 134677788
Q ss_pred hhhhhhcCChHHHHHHHHhcC-------CC--ChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcCCCHHHHHHH
Q 038200 261 IDLYSKCQKVEVAQRVFDSMA-------DR--NLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGV 331 (523)
Q Consensus 261 ~~~~~~~~~~~~a~~~~~~~~-------~~--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~l 331 (523)
.+++.-.|+++.|.+.|+... .+ ...+.-+|...|.-..++.+|+.++.+-..--..-.+..-....+.+|
T Consensus 242 gN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSL 321 (639)
T KOG1130|consen 242 GNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSL 321 (639)
T ss_pred chhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 899999999999999887642 22 234566677888888888889887765433110000022345678888
Q ss_pred HHHHhhcCcHHHHHHHHHHhhH
Q 038200 332 ICACVRAELLTEGRKYFRQMID 353 (523)
Q Consensus 332 l~~~~~~~~~~~a~~~~~~~~~ 353 (523)
..++...|..++|+.+.+...+
T Consensus 322 gna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 322 GNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHHHHhhhhHHHHHHHHHHHHH
Confidence 8899999999999887776554
No 204
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=97.34 E-value=0.18 Score=49.08 Aligned_cols=188 Identities=9% Similarity=0.009 Sum_probs=128.1
Q ss_pred chHHHHHHhhhhhhcCChHHHHHHHHhcCCC---ChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcCCCHHHHH
Q 038200 253 NIILDTALIDLYSKCQKVEVAQRVFDSMADR---NLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFI 329 (523)
Q Consensus 253 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~ 329 (523)
+...|..-+.--...|+.+.+.-+|+++.-| =...|-..+.-....|+.+-|..++....+-. ++-.+.+-.
T Consensus 296 ql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~-----~k~~~~i~L 370 (577)
T KOG1258|consen 296 QLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIH-----VKKTPIIHL 370 (577)
T ss_pred HHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhc-----CCCCcHHHH
Confidence 4567888888888999999999999998664 23455555555556699999988887776654 222222222
Q ss_pred HHHHHHhhcCcHHHHHHHHHHhhHhcCCCCCh-HHHHHHHHHHHcCCChHHHH---HHHHhCCCCCCCCCchHHHHHHHH
Q 038200 330 GVICACVRAELLTEGRKYFRQMIDFYKIKPNF-AHYWCMANLYAGAELTEEAE---EILRKMPEDNDNMSFESIMWVSLL 405 (523)
Q Consensus 330 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~---~~~~~~~~~~~~~~~~~~~~~~l~ 405 (523)
.-...+-..|+++.|..+++.+.+. . |+. ..-..-+....+.|..+.+. +++................+....
T Consensus 371 ~~a~f~e~~~n~~~A~~~lq~i~~e--~-pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~ 447 (577)
T KOG1258|consen 371 LEARFEESNGNFDDAKVILQRIESE--Y-PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFA 447 (577)
T ss_pred HHHHHHHhhccHHHHHHHHHHHHhh--C-CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHH
Confidence 2222344578999999999999985 4 543 33333456667888888888 666666542211111222223333
Q ss_pred H-HHHhcCCHHHHHHHHHHHhhcCCCChhhHHHHHHHHHhcCCh
Q 038200 406 S-LCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQW 448 (523)
Q Consensus 406 ~-~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 448 (523)
. .+...++.+.|..++.++.+..|++...|..+++.....+..
T Consensus 448 r~~~~i~~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~ 491 (577)
T KOG1258|consen 448 RLRYKIREDADLARIILLEANDILPDCKVLYLELIRFELIQPSG 491 (577)
T ss_pred HHHHHHhcCHHHHHHHHHHhhhcCCccHHHHHHHHHHHHhCCcc
Confidence 3 355678999999999999999999999999999988877643
No 205
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.31 E-value=0.0083 Score=46.03 Aligned_cols=106 Identities=12% Similarity=0.119 Sum_probs=58.4
Q ss_pred HHHHHHhcCCchHHHHHHHHHHHCCCCCC--HHHHHHHHHHHhccccHHHHHHHHHHHHHcCCCC--chHHHHHHhhhhh
Q 038200 190 MISGYSKSGNPGCSLKLFREMMKSGFRGN--DKTMASVLTACGRSARFNEGRSVHGYTVRTSLKP--NIILDTALIDLYS 265 (523)
Q Consensus 190 li~~~~~~~~~~~a~~~~~~m~~~~~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~ 265 (523)
+..++-..|+.++|+.+|++....|.... ...+..+.+.+...|++++|..+++........+ +......+..++.
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence 44556667777777777777777665443 2345556666677777777777777666542210 1122222333455
Q ss_pred hcCChHHHHHHHHhcCCCChHHHHHHHHHH
Q 038200 266 KCQKVEVAQRVFDSMADRNLVCWNAMILGH 295 (523)
Q Consensus 266 ~~~~~~~a~~~~~~~~~~~~~~~~~li~~~ 295 (523)
..|+.++|++.+-....++...|..-|..|
T Consensus 87 ~~gr~~eAl~~~l~~la~~~~~y~ra~~~y 116 (120)
T PF12688_consen 87 NLGRPKEALEWLLEALAETLPRYRRAIRFY 116 (120)
T ss_pred HCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566666666665544433333444433333
No 206
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.31 E-value=0.13 Score=47.07 Aligned_cols=276 Identities=13% Similarity=0.072 Sum_probs=132.6
Q ss_pred cCCchHHHHHHHHHHHhCCCCCchHHHHHHHHH--HccCChHHHHHHHhhcCC-CCcc--hHHHHHHHHHhcCCHHHHHH
Q 038200 100 TGCVERGGMCHGLALKNGVDFELPVMNSLINMY--GCFGAMDCARNMFVQMSP-RDLI--SWNSIVSGHVRSGDMSAAHE 174 (523)
Q Consensus 100 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~g~~~~A~~~~~~~~~-~~~~--~~~~ll~~~~~~~~~~~a~~ 174 (523)
.|+-..|.+.-.+..+. +..|..-.-.|+.+. .-.|+++.|.+-|+.|.. |... -...+.-.-.+.|+.+.|.+
T Consensus 97 AGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~dPEtRllGLRgLyleAqr~GareaAr~ 175 (531)
T COG3898 97 AGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDDPETRLLGLRGLYLEAQRLGAREAARH 175 (531)
T ss_pred cCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcChHHHHHhHHHHHHHHHhcccHHHHHH
Confidence 34555555544443321 222333333333332 235666666666666652 2111 11122222235566666666
Q ss_pred HHhcCCC--CC-hhHHHHHHHHHHhcCCchHHHHHHHHHHHCC-CCCCHH--HHHHHHHHHh---ccccHHHHHHHHHHH
Q 038200 175 LFDIMPE--RN-VVSWNIMISGYSKSGNPGCSLKLFREMMKSG-FRGNDK--TMASVLTACG---RSARFNEGRSVHGYT 245 (523)
Q Consensus 175 ~~~~~~~--~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~-~~p~~~--~~~~ll~~~~---~~~~~~~a~~~~~~~ 245 (523)
.-++.-. |. .-.+...+...+..|+|+.|+++++.-.... +.++.. .-..|+.+-. -..+...|...-.+.
T Consensus 176 yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a 255 (531)
T COG3898 176 YAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEA 255 (531)
T ss_pred HHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHH
Confidence 5555432 21 2345566666667777777777666554432 233332 1122222211 112344455444444
Q ss_pred HHcCCCCch-HHHHHHhhhhhhcCChHHHHHHHHhcCC--CChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcC
Q 038200 246 VRTSLKPNI-ILDTALIDLYSKCQKVEVAQRVFDSMAD--RNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSIS 322 (523)
Q Consensus 246 ~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~ 322 (523)
.+. .|+. ..-..-..++.+.|+..++-.+++.+-+ |.+..+.. ..+.+.|+ .+..-+++..+.. .++
T Consensus 256 ~KL--~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~ia~l--Y~~ar~gd--ta~dRlkRa~~L~----slk 325 (531)
T COG3898 256 NKL--APDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDIALL--YVRARSGD--TALDRLKRAKKLE----SLK 325 (531)
T ss_pred hhc--CCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHHHHH--HHHhcCCC--cHHHHHHHHHHHH----hcC
Confidence 442 3332 2222334566667777777777776633 34333322 22233343 2333333322211 034
Q ss_pred CC-HHHHHHHHHHHhhcCcHHHHHHHHHHhhHhcCCCCChHHHHHHHHHHHc-CCChHHHHHHHHhCCC
Q 038200 323 PD-EITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAG-AELTEEAEEILRKMPE 389 (523)
Q Consensus 323 p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~ 389 (523)
|| ..+...+..+....|++..|..--+... ...|....|..|.+.-.. .|+-.++...+.+.+.
T Consensus 326 ~nnaes~~~va~aAlda~e~~~ARa~Aeaa~---r~~pres~~lLlAdIeeAetGDqg~vR~wlAqav~ 391 (531)
T COG3898 326 PNNAESSLAVAEAALDAGEFSAARAKAEAAA---REAPRESAYLLLADIEEAETGDQGKVRQWLAQAVK 391 (531)
T ss_pred ccchHHHHHHHHHHHhccchHHHHHHHHHHh---hhCchhhHHHHHHHHHhhccCchHHHHHHHHHHhc
Confidence 44 3455555666666777776666555554 345666677666665543 4777777777766654
No 207
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.31 E-value=0.0075 Score=53.78 Aligned_cols=107 Identities=7% Similarity=0.057 Sum_probs=79.6
Q ss_pred HHHHHHHHHHhhcCcHHHHHHHHHHhhHhcCCCC-ChHHHHHHHHHHHcCCChHHHHHHHHhCCCCCCCCCchHHHHHHH
Q 038200 326 ITFIGVICACVRAELLTEGRKYFRQMIDFYKIKP-NFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSL 404 (523)
Q Consensus 326 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l 404 (523)
..|...+..+.+.|++++|...|+.+.+.|.-.+ .+..+..+...|...|++++|...|+.+.....+.+.....+..+
T Consensus 144 ~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~kl 223 (263)
T PRK10803 144 TDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKV 223 (263)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHH
Confidence 3455555555667999999999999998532211 135677789999999999999999999985422222234555666
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhcCCCCh
Q 038200 405 LSLCRFQGAVAMVERLAKSFVDMDPQDF 432 (523)
Q Consensus 405 ~~~~~~~g~~~~a~~~~~~~~~~~p~~~ 432 (523)
...+...|+.+.|..+++.+++..|++.
T Consensus 224 g~~~~~~g~~~~A~~~~~~vi~~yP~s~ 251 (263)
T PRK10803 224 GVIMQDKGDTAKAKAVYQQVIKKYPGTD 251 (263)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCcCCH
Confidence 6778889999999999999999999765
No 208
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.31 E-value=0.048 Score=50.65 Aligned_cols=166 Identities=14% Similarity=0.125 Sum_probs=104.7
Q ss_pred HHHhhhhhhcCChHHHHHHHHhcCCC-------ChHHHHHHHHHHHh---cCChHHHHHHHHHHHhCCCCCCCcCCCHHH
Q 038200 258 TALIDLYSKCQKVEVAQRVFDSMADR-------NLVCWNAMILGHCI---HGKPEEGIKLFTALVNGTVAGGSISPDEIT 327 (523)
Q Consensus 258 ~~l~~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~li~~~~~---~g~~~~a~~~~~~m~~~~~~~~~~~p~~~~ 327 (523)
..++-+|....+++..+++++.+... ....-....-++-+ .|+.++|++++..+.... ..+++.+
T Consensus 145 ~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~-----~~~~~d~ 219 (374)
T PF13281_consen 145 INLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESD-----ENPDPDT 219 (374)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhcc-----CCCChHH
Confidence 34555688888888888888888653 12222334455556 789999999998865555 5678888
Q ss_pred HHHHHHHHhh---------cCcHHHHHHHHHHhhHhcCCCCChHHHHHHHHHHHcCCChH----HHHHHH---Hh-CCCC
Q 038200 328 FIGVICACVR---------AELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTE----EAEEIL---RK-MPED 390 (523)
Q Consensus 328 ~~~ll~~~~~---------~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~----~A~~~~---~~-~~~~ 390 (523)
|..+.+.|-+ ....++|...|.+.-+ +.|+..+--.++..+...|... +..++- .. ..++
T Consensus 220 ~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe---~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~k 296 (374)
T PF13281_consen 220 LGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFE---IEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRK 296 (374)
T ss_pred HHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHc---CCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhh
Confidence 8888776642 2246778888877654 4455443333344444444322 222222 11 1111
Q ss_pred -CCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCC
Q 038200 391 -NDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQD 431 (523)
Q Consensus 391 -~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~ 431 (523)
...-..+-..+.+++.++.-.|+.+.|.+.++++..+.|+.
T Consensus 297 g~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~ 338 (374)
T PF13281_consen 297 GSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPA 338 (374)
T ss_pred ccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcc
Confidence 11234456667778888889999999999999999988753
No 209
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.29 E-value=0.013 Score=50.33 Aligned_cols=121 Identities=16% Similarity=0.091 Sum_probs=58.2
Q ss_pred HHHHHHccCCchHHHHHHHHHHHhCCCCCchHHHHHHHHHHccCChHHHHHHHhhcCC----CCcchHHHH-----HHHH
Q 038200 93 LFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSP----RDLISWNSI-----VSGH 163 (523)
Q Consensus 93 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~l-----l~~~ 163 (523)
++..+...+.+.-....+..+++...+.++.....|+++-.+.||.+.|...|+...+ -|....+.+ ...|
T Consensus 183 ~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~ 262 (366)
T KOG2796|consen 183 MANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLH 262 (366)
T ss_pred HHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhhe
Confidence 3333334444444444444444444444444444444444555555555555543321 122222221 2224
Q ss_pred HhcCCHHHHHHHHhcCCC---CChhHHHHHHHHHHhcCCchHHHHHHHHHHHC
Q 038200 164 VRSGDMSAAHELFDIMPE---RNVVSWNIMISGYSKSGNPGCSLKLFREMMKS 213 (523)
Q Consensus 164 ~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 213 (523)
.-.+++..|...|++++. .|+..-|.-.-+..-.|+..+|++.++.|.+.
T Consensus 263 lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~ 315 (366)
T KOG2796|consen 263 LGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ 315 (366)
T ss_pred ecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 445566666666666554 23344444344444456777777777777764
No 210
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.28 E-value=0.0039 Score=58.98 Aligned_cols=114 Identities=11% Similarity=0.017 Sum_probs=61.9
Q ss_pred chHHHHHHhhhhhhcCChHHHHHHHHhcCC-C-----ChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcCCCHH
Q 038200 253 NIILDTALIDLYSKCQKVEVAQRVFDSMAD-R-----NLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEI 326 (523)
Q Consensus 253 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~-----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~p~~~ 326 (523)
+......+++......+++.+..++.+... + -..|..++|..|...|..+.++.+++.=...| +-||..
T Consensus 65 S~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yG-----iF~D~~ 139 (429)
T PF10037_consen 65 SSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYG-----IFPDNF 139 (429)
T ss_pred cHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcc-----cCCChh
Confidence 333444444444444445555555444432 1 12234466666666666666666666666666 666666
Q ss_pred HHHHHHHHHhhcCcHHHHHHHHHHhhHhcCCCCChHHHHHHHHHHH
Q 038200 327 TFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYA 372 (523)
Q Consensus 327 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 372 (523)
+++.|+..+.+.|++..|.++...|... ..-.++.++..-+.++.
T Consensus 140 s~n~Lmd~fl~~~~~~~A~~V~~~~~lQ-e~~~~~~t~~L~l~~~~ 184 (429)
T PF10037_consen 140 SFNLLMDHFLKKGNYKSAAKVATEMMLQ-EEFDNPSTQALALYSCY 184 (429)
T ss_pred hHHHHHHHHhhcccHHHHHHHHHHHHHh-hccCCchHHHHHHHHHH
Confidence 6666666666666666666666665554 44444444444333333
No 211
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.18 E-value=0.016 Score=46.90 Aligned_cols=69 Identities=22% Similarity=0.273 Sum_probs=54.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHH-----hCCCccCCc
Q 038200 400 MWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMK-----KRRMGRMPG 468 (523)
Q Consensus 400 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~-----~~~~~~~~~ 468 (523)
....++..+...|+++.|.+.++.+...+|-+...|..++.+|...|+..+|.++|+++. +.|+.|.+.
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~ 137 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPE 137 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHH
Confidence 445667778899999999999999999999999999999999999999999999999875 346666553
No 212
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.15 E-value=0.21 Score=46.12 Aligned_cols=106 Identities=16% Similarity=0.114 Sum_probs=68.4
Q ss_pred hhhhhhcCChHHHHHHHHhcCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcCCCHHHHHHHHHHHhhcCc
Q 038200 261 IDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAEL 340 (523)
Q Consensus 261 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~ll~~~~~~~~ 340 (523)
+.-+...|+...|.++-.+..-|+-..|-..+.+++..++|++-.++... . -++.-|..++.+|.+.|.
T Consensus 184 i~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s----k-------KsPIGyepFv~~~~~~~~ 252 (319)
T PF04840_consen 184 IRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS----K-------KSPIGYEPFVEACLKYGN 252 (319)
T ss_pred HHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC----C-------CCCCChHHHHHHHHHCCC
Confidence 44445567777777777777667777777777777777777766654321 1 123566677777777777
Q ss_pred HHHHHHHHHHhhHhcCCCCChHHHHHHHHHHHcCCChHHHHHHHHhCC
Q 038200 341 LTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMP 388 (523)
Q Consensus 341 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 388 (523)
..+|..+..++.. ..-+..|.++|++.+|.+.-.+..
T Consensus 253 ~~eA~~yI~k~~~-----------~~rv~~y~~~~~~~~A~~~A~~~k 289 (319)
T PF04840_consen 253 KKEASKYIPKIPD-----------EERVEMYLKCGDYKEAAQEAFKEK 289 (319)
T ss_pred HHHHHHHHHhCCh-----------HHHHHHHHHCCCHHHHHHHHHHcC
Confidence 7777777666321 334566777777777766655544
No 213
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.14 E-value=0.031 Score=48.05 Aligned_cols=161 Identities=12% Similarity=0.099 Sum_probs=84.6
Q ss_pred hhhhcCChHHHHHHHHhcCC--C----ChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcCCCH--HHHHHHHHH
Q 038200 263 LYSKCQKVEVAQRVFDSMAD--R----NLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDE--ITFIGVICA 334 (523)
Q Consensus 263 ~~~~~~~~~~a~~~~~~~~~--~----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~p~~--~~~~~ll~~ 334 (523)
.+...|++.+|...|+.+.. | .....-.++.++.+.|+++.|...+++.+... |+. ..+...+.+
T Consensus 14 ~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~y-------P~~~~~~~A~Y~~g 86 (203)
T PF13525_consen 14 EALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLY-------PNSPKADYALYMLG 86 (203)
T ss_dssp HHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH--------TT-TTHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-------CCCcchhhHHHHHH
Confidence 34445555555555555533 1 11234455666667777777777777766643 321 112222222
Q ss_pred Hhh-------------cCcHHHHHHHHHHhhHhcCCCCChHHHHHHHHHHHcCCChHHHHHHHHhCCCCCCCCCchHHHH
Q 038200 335 CVR-------------AELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMW 401 (523)
Q Consensus 335 ~~~-------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 401 (523)
.+. .+...+|... +..++.-|-.+....+|...+..+.+ .. ...-
T Consensus 87 ~~~~~~~~~~~~~~~D~~~~~~A~~~----------------~~~li~~yP~S~y~~~A~~~l~~l~~-----~l-a~~e 144 (203)
T PF13525_consen 87 LSYYKQIPGILRSDRDQTSTRKAIEE----------------FEELIKRYPNSEYAEEAKKRLAELRN-----RL-AEHE 144 (203)
T ss_dssp HHHHHHHHHHH-TT---HHHHHHHHH----------------HHHHHHH-TTSTTHHHHHHHHHHHHH-----HH-HHHH
T ss_pred HHHHHhCccchhcccChHHHHHHHHH----------------HHHHHHHCcCchHHHHHHHHHHHHHH-----HH-HHHH
Confidence 111 1112223333 33444445455555566555554441 11 1111
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhcCCCCh---hhHHHHHHHHHhcCChhHHH
Q 038200 402 VSLLSLCRFQGAVAMVERLAKSFVDMDPQDF---SRYQFLLNVYAVAGQWEDVA 452 (523)
Q Consensus 402 ~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~ 452 (523)
..+...|.+.|.+..|..-++.+++.-|+++ .+...++.+|.+.|..+.+.
T Consensus 145 ~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 145 LYIARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp HHHHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 2345668889999999999999999888754 45667888898988887544
No 214
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.13 E-value=0.002 Score=44.85 Aligned_cols=66 Identities=18% Similarity=0.158 Sum_probs=49.0
Q ss_pred HHHHHcCCChHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhhHH
Q 038200 368 ANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQ 436 (523)
Q Consensus 368 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 436 (523)
-..|.+.+++++|.++++.+... .+.+...+......+...|++++|.+.++.+.+..|+++....
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~---~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~ 67 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALEL---DPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARA 67 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHh---CcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHH
Confidence 35677888888888888888853 2334556666677788888888888888888888887665443
No 215
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=97.11 E-value=0.012 Score=45.73 Aligned_cols=87 Identities=8% Similarity=-0.009 Sum_probs=60.6
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhCC----------CCCCCcCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhHhc
Q 038200 286 VCWNAMILGHCIHGKPEEGIKLFTALVNGT----------VAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFY 355 (523)
Q Consensus 286 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~----------~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 355 (523)
.++.++|.++++.|+.+....+++..-.-. ..+....|+..+..+++.+|+..+++..|+++++.+.+.|
T Consensus 3 ~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y 82 (126)
T PF12921_consen 3 ELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKY 82 (126)
T ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHc
Confidence 455556666666666666655554432211 1123367888888888888888889999999999888888
Q ss_pred CCCCChHHHHHHHHHHH
Q 038200 356 KIKPNFAHYWCMANLYA 372 (523)
Q Consensus 356 ~~~~~~~~~~~l~~~~~ 372 (523)
+++.+...|..|+.-..
T Consensus 83 ~I~i~~~~W~~Ll~W~~ 99 (126)
T PF12921_consen 83 PIPIPKEFWRRLLEWAY 99 (126)
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 88888888888776543
No 216
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=97.05 E-value=0.0035 Score=58.84 Aligned_cols=63 Identities=13% Similarity=-0.046 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChh---hHHHHHHHHHhcCChhHHHHHHHHHHh
Q 038200 398 SIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFS---RYQFLLNVYAVAGQWEDVARVRELMKK 460 (523)
Q Consensus 398 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~---~~~~l~~~~~~~g~~~~A~~~~~~m~~ 460 (523)
...++.+..+|...|++++|...++++++++|++.. +|..++.+|...|+.++|+..+++..+
T Consensus 75 a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALe 140 (453)
T PLN03098 75 AEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALR 140 (453)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 445555555555555555555555555555555442 255555555555555555555555544
No 217
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.05 E-value=0.0015 Score=40.03 Aligned_cols=41 Identities=27% Similarity=0.454 Sum_probs=36.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhhHHHHHH
Q 038200 400 MWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLN 440 (523)
Q Consensus 400 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 440 (523)
++..+..++...|++++|+++++++++..|+++.++..|+.
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 56778888999999999999999999999999988887764
No 218
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=97.04 E-value=0.017 Score=45.26 Aligned_cols=121 Identities=14% Similarity=0.043 Sum_probs=79.2
Q ss_pred HHHHHHcCCChHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhh-HHHHHHHHHhc
Q 038200 367 MANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSR-YQFLLNVYAVA 445 (523)
Q Consensus 367 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~-~~~l~~~~~~~ 445 (523)
-.....+.|++++|.+.|+.+..+-..-+-....-..++.++...|+++.|...+++++++.|.++.+ |.....+++.-
T Consensus 16 ~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~ 95 (142)
T PF13512_consen 16 EAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYY 95 (142)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHH
Confidence 34445677899999999998886522112234556677888999999999999999999999986542 33334443332
Q ss_pred CChhHHHHHHHHHHhCCCccCCceeEEEeCCeEEEEecCCCCchHHHHHHHHHHhcccCCccccc
Q 038200 446 GQWEDVARVRELMKKRRMGRMPGCRLVDLKEVVEKLKVGHFWRGGMKEEVNKMMECRQSRSLATV 510 (523)
Q Consensus 446 g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 510 (523)
...+ ..+..+. +...++. ...+++..++++++.-|++..+..
T Consensus 96 ~~~~---~~~~~~~--~~drD~~------------------~~~~A~~~f~~lv~~yP~S~ya~d 137 (142)
T PF13512_consen 96 EQDE---GSLQSFF--RSDRDPT------------------PARQAFRDFEQLVRRYPNSEYAAD 137 (142)
T ss_pred HHhh---hHHhhhc--ccccCcH------------------HHHHHHHHHHHHHHHCcCChhHHH
Confidence 2211 2222222 2333332 456799999999999998887655
No 219
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=96.88 E-value=0.55 Score=46.54 Aligned_cols=173 Identities=10% Similarity=-0.042 Sum_probs=98.3
Q ss_pred CChhHHHHHHHHhhccCCchhHHHHhccCCC-CCcccHHHHHH----------HHHhCCCchHHHHHHHHHHHCCCCCCc
Q 038200 19 NNSFWTINLLKHSADFGSPDYTVLVFKCINN-PGTFCVNAVIK----------AYSNSCVPDQGVVFYLQMIKNGFMPNS 87 (523)
Q Consensus 19 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~ll~----------~~~~~~~~~~a~~~~~~m~~~~~~p~~ 87 (523)
|+|.+|..|...-...-.++-|+..|-+... +.+..-..|-. .-+--|++++|.++|-.|-+++
T Consensus 690 PHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~~g~feeaek~yld~drrD----- 764 (1189)
T KOG2041|consen 690 PHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAFYGEFEEAEKLYLDADRRD----- 764 (1189)
T ss_pred CchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhhhcchhHhhhhhhccchhh-----
Confidence 8899999999888877888888888876542 22211111111 1122488999999988877653
Q ss_pred ccHHHHHHHHHccCCchHHHHHHHHHHHhCC--CCCchHHHHHHHHHHccCChHHHHHHHhhcCCCCcchHHHHHHHHHh
Q 038200 88 YTFVSLFGSCAKTGCVERGGMCHGLALKNGV--DFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVR 165 (523)
Q Consensus 88 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~ 165 (523)
..+....+.|++-.+.++++.--. +. ..-...++.+...+.....+++|.+.+..-.. -...+.++.+
T Consensus 765 ----LAielr~klgDwfrV~qL~r~g~~-d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~-----~e~~~ecly~ 834 (1189)
T KOG2041|consen 765 ----LAIELRKKLGDWFRVYQLIRNGGS-DDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGD-----TENQIECLYR 834 (1189)
T ss_pred ----hhHHHHHhhhhHHHHHHHHHccCC-CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-----hHhHHHHHHH
Confidence 235556667777766666543100 00 01124566677777776777777776665421 1123344444
Q ss_pred cCCHHHHHHHHhcCCCCChhHHHHHHHHHHhcCCchHHHHHH
Q 038200 166 SGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLF 207 (523)
Q Consensus 166 ~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~ 207 (523)
..++++-+.+-..+++ +....-.+...+...|.-++|.+.|
T Consensus 835 le~f~~LE~la~~Lpe-~s~llp~~a~mf~svGMC~qAV~a~ 875 (1189)
T KOG2041|consen 835 LELFGELEVLARTLPE-DSELLPVMADMFTSVGMCDQAVEAY 875 (1189)
T ss_pred HHhhhhHHHHHHhcCc-ccchHHHHHHHHHhhchHHHHHHHH
Confidence 4555555555555544 2333444555555556555555544
No 220
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.86 E-value=0.38 Score=44.41 Aligned_cols=111 Identities=14% Similarity=0.207 Sum_probs=83.3
Q ss_pred HHHHHHHHHHhhcCcHHHHHHHHHHhhHhcCCCCChHHHHHHHHHHHcCCChHHHHHHHHhCCCCCCCCCchHHHHHHHH
Q 038200 326 ITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLL 405 (523)
Q Consensus 326 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~ 405 (523)
.+.+..+.-|...|....|.++-.+. .+ |+...|...+.+|+..++|++-.++... .+ .| .-|..++
T Consensus 178 ~Sl~~Ti~~li~~~~~k~A~kl~k~F----kv-~dkrfw~lki~aLa~~~~w~eL~~fa~s-kK-----sP--IGyepFv 244 (319)
T PF04840_consen 178 LSLNDTIRKLIEMGQEKQAEKLKKEF----KV-PDKRFWWLKIKALAENKDWDELEKFAKS-KK-----SP--IGYEPFV 244 (319)
T ss_pred CCHHHHHHHHHHCCCHHHHHHHHHHc----CC-cHHHHHHHHHHHHHhcCCHHHHHHHHhC-CC-----CC--CChHHHH
Confidence 35566677777888887777665444 44 7888899999999999999988887553 21 22 5567788
Q ss_pred HHHHhcCCHHHHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHH
Q 038200 406 SLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELM 458 (523)
Q Consensus 406 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 458 (523)
.+|...|+..+|..+..++ .+..-+..|.+.|+|.+|.+.--+.
T Consensus 245 ~~~~~~~~~~eA~~yI~k~---------~~~~rv~~y~~~~~~~~A~~~A~~~ 288 (319)
T PF04840_consen 245 EACLKYGNKKEASKYIPKI---------PDEERVEMYLKCGDYKEAAQEAFKE 288 (319)
T ss_pred HHHHHCCCHHHHHHHHHhC---------ChHHHHHHHHHCCCHHHHHHHHHHc
Confidence 8999999999999888772 2256688899999999998765443
No 221
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=96.76 E-value=0.3 Score=42.00 Aligned_cols=60 Identities=10% Similarity=0.056 Sum_probs=32.4
Q ss_pred HHHHHHHhcCCchHHHHHHHHHHHCCCC--CCHHHHHHHHHHHhccccHHHHHHHHHHHHHc
Q 038200 189 IMISGYSKSGNPGCSLKLFREMMKSGFR--GNDKTMASVLTACGRSARFNEGRSVHGYTVRT 248 (523)
Q Consensus 189 ~li~~~~~~~~~~~a~~~~~~m~~~~~~--p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 248 (523)
.....+...|++.+|...|+.+...-.. --......++.++.+.|+++.|...++...+.
T Consensus 10 ~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~ 71 (203)
T PF13525_consen 10 QKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL 71 (203)
T ss_dssp HHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3444556666777777777666654211 11223445555666666666666666666654
No 222
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.75 E-value=0.019 Score=52.82 Aligned_cols=98 Identities=13% Similarity=0.038 Sum_probs=82.5
Q ss_pred hHHHHHHHHHHHcCCChHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhhHHHHHH
Q 038200 361 FAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLN 440 (523)
Q Consensus 361 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 440 (523)
..++..|.-+|.+.+++.+|++.-.+.++. -+++.-.+..-..++...|+++.|+..|+++.+++|+|-.+-..|+.
T Consensus 257 ~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~---~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~ 333 (397)
T KOG0543|consen 257 LACHLNLAACYLKLKEYKEAIESCNKVLEL---DPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIK 333 (397)
T ss_pred HHHhhHHHHHHHhhhhHHHHHHHHHHHHhc---CCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence 356777889999999999999999999865 35567777777889999999999999999999999999888888888
Q ss_pred HHHhcCChhH-HHHHHHHHHhC
Q 038200 441 VYAVAGQWED-VARVRELMKKR 461 (523)
Q Consensus 441 ~~~~~g~~~~-A~~~~~~m~~~ 461 (523)
+-.+..++.+ ..++|..|..+
T Consensus 334 l~~k~~~~~~kekk~y~~mF~k 355 (397)
T KOG0543|consen 334 LKQKIREYEEKEKKMYANMFAK 355 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHhhc
Confidence 8877776655 47888888664
No 223
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.74 E-value=0.0039 Score=44.03 Aligned_cols=62 Identities=13% Similarity=0.102 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhc----CCC---ChhhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 038200 399 IMWVSLLSLCRFQGAVAMVERLAKSFVDM----DPQ---DFSRYQFLLNVYAVAGQWEDVARVRELMKK 460 (523)
Q Consensus 399 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~p~---~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 460 (523)
.+++.+...+...|++++|+..+++++++ +++ ...++..++.+|...|++++|++.+++..+
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 45666666777777788777777777752 222 245777888888888888888888887643
No 224
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=96.72 E-value=0.072 Score=47.21 Aligned_cols=105 Identities=15% Similarity=0.035 Sum_probs=72.9
Q ss_pred CCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhHhcCCCCChHHHHHHHHHHHcC---CChHHHHHHHHhCCCCCCCCCchH
Q 038200 322 SPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGA---ELTEEAEEILRKMPEDNDNMSFES 398 (523)
Q Consensus 322 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~~~~~~~~~~ 398 (523)
+-|...|..|..+|...|+++.|..-|.+..+. -.+++..+..+..++... ....++.++|+++... -+-|.
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL--~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~---D~~~i 227 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRL--AGDNPEILLGLAEALYYQAGQQMTAKARALLRQALAL---DPANI 227 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhc---CCccH
Confidence 345678888888888888888888888888773 444566666666655432 2346788888888853 13344
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCC
Q 038200 399 IMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQD 431 (523)
Q Consensus 399 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~ 431 (523)
.....+...+...|++.+|...++.+.+..|.+
T Consensus 228 ral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~ 260 (287)
T COG4235 228 RALSLLAFAAFEQGDYAEAAAAWQMLLDLLPAD 260 (287)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCC
Confidence 555555567888888888888888888877654
No 225
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.70 E-value=0.15 Score=49.78 Aligned_cols=230 Identities=14% Similarity=0.120 Sum_probs=108.9
Q ss_pred HHHHHHHHHccCCch--HHHHHHHHHHHhCCCCCchHHHHHHHHHHccCChHHHHHHHhhcCCCCcchHHHHHHHHHhcC
Q 038200 90 FVSLFGSCAKTGCVE--RGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSG 167 (523)
Q Consensus 90 ~~~ll~~~~~~~~~~--~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~ 167 (523)
++..-.+|.+.++.. +...-++++.+.|-.|+... +...++-.|.+.+|-++|.+ +|
T Consensus 601 f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P~~iL---lA~~~Ay~gKF~EAAklFk~------------------~G 659 (1081)
T KOG1538|consen 601 FETARKAYIRVRDLRYLELISELEERKKRGETPNDLL---LADVFAYQGKFHEAAKLFKR------------------SG 659 (1081)
T ss_pred hHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCchHHH---HHHHHHhhhhHHHHHHHHHH------------------cC
Confidence 444444554444433 22333555666666565533 33445666777777766655 45
Q ss_pred CHHHHHHHHhcCCCCChhHHHHHHHHHHhcCCchHHHHHHHHHHHC--CC-CCCHHHHHHHHHHHhccccHHHHHHHHH-
Q 038200 168 DMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKS--GF-RGNDKTMASVLTACGRSARFNEGRSVHG- 243 (523)
Q Consensus 168 ~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~--~~-~p~~~~~~~ll~~~~~~~~~~~a~~~~~- 243 (523)
.-..|.++|..|.- -....-+...|..++-..+.++--+. ++ +|. +....+...|+.++|..+..
T Consensus 660 ~enRAlEmyTDlRM------FD~aQE~~~~g~~~eKKmL~RKRA~WAr~~kePk-----aAAEmLiSaGe~~KAi~i~~d 728 (1081)
T KOG1538|consen 660 HENRALEMYTDLRM------FDYAQEFLGSGDPKEKKMLIRKRADWARNIKEPK-----AAAEMLISAGEHVKAIEICGD 728 (1081)
T ss_pred chhhHHHHHHHHHH------HHHHHHHhhcCChHHHHHHHHHHHHHhhhcCCcH-----HHHHHhhcccchhhhhhhhhc
Confidence 55556655555431 11223344444444433333221110 11 111 12233344455555444321
Q ss_pred -----HHHHcCC---CCchHHHHHHhhhhhhcCChHHHHHHHHhcCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 038200 244 -----YTVRTSL---KPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGT 315 (523)
Q Consensus 244 -----~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 315 (523)
-+.+.+- ..+..+...+...+.+...+.-|-++|.+|-. ..++++.....++|++|..+-++..+
T Consensus 729 ~gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD-----~ksiVqlHve~~~W~eAFalAe~hPe-- 801 (1081)
T KOG1538|consen 729 HGWVDMLIDIARKLDKAEREPLLLCATYLKKLDSPGLAAEIFLKMGD-----LKSLVQLHVETQRWDEAFALAEKHPE-- 801 (1081)
T ss_pred ccHHHHHHHHHhhcchhhhhHHHHHHHHHhhccccchHHHHHHHhcc-----HHHHhhheeecccchHhHhhhhhCcc--
Confidence 1111111 11233444444444455556666666666643 12345556666777777766665444
Q ss_pred CCCCCcCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhHhcCCCCChHHHHHHHHHHHcCCChHHHHHHHHhCC
Q 038200 316 VAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMP 388 (523)
Q Consensus 316 ~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 388 (523)
..||. |....+-++...++++|.+ +|.++|+-.+|.++++++.
T Consensus 802 -----~~~dV--y~pyaqwLAE~DrFeEAqk-----------------------AfhkAGr~~EA~~vLeQLt 844 (1081)
T KOG1538|consen 802 -----FKDDV--YMPYAQWLAENDRFEEAQK-----------------------AFHKAGRQREAVQVLEQLT 844 (1081)
T ss_pred -----ccccc--cchHHHHhhhhhhHHHHHH-----------------------HHHHhcchHHHHHHHHHhh
Confidence 33432 2233333444444444433 4556677777777777765
No 226
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.64 E-value=0.044 Score=44.28 Aligned_cols=74 Identities=14% Similarity=0.069 Sum_probs=54.5
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhH----hcCCCCCh
Q 038200 286 VCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMID----FYKIKPNF 361 (523)
Q Consensus 286 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~ 361 (523)
.....++..+...|++++|..+...+.... +-+...+..+|.++...|+...|.++|+++.. ..|+.|++
T Consensus 63 ~~~~~l~~~~~~~~~~~~a~~~~~~~l~~d------P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~ 136 (146)
T PF03704_consen 63 DALERLAEALLEAGDYEEALRLLQRALALD------PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSP 136 (146)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHS------TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----H
T ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHhcC------CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCH
Confidence 355667778888999999999999999954 44678999999999999999999999988754 35888887
Q ss_pred HHHH
Q 038200 362 AHYW 365 (523)
Q Consensus 362 ~~~~ 365 (523)
.+-.
T Consensus 137 ~~~~ 140 (146)
T PF03704_consen 137 ETRA 140 (146)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6643
No 227
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.61 E-value=0.26 Score=45.97 Aligned_cols=90 Identities=8% Similarity=0.025 Sum_probs=55.2
Q ss_pred HHHHHHHhcCCHHHHHHHHhcCCCC-------ChhHHHHHHHHHHh---cCCchHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 038200 158 SIVSGHVRSGDMSAAHELFDIMPER-------NVVSWNIMISGYSK---SGNPGCSLKLFREMMKSGFRGNDKTMASVLT 227 (523)
Q Consensus 158 ~ll~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~li~~~~~---~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~ 227 (523)
.++-+|....+++..+++++.+... ....-...+-++-+ .|+.++|++++..+......++..+|..+.+
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR 225 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR 225 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 3444567777777777777777652 11222233445556 7888888888888665556777788887776
Q ss_pred HHhc---------cccHHHHHHHHHHHHH
Q 038200 228 ACGR---------SARFNEGRSVHGYTVR 247 (523)
Q Consensus 228 ~~~~---------~~~~~~a~~~~~~~~~ 247 (523)
.|-. ....++|...|.+.-+
T Consensus 226 IyKD~~~~s~~~d~~~ldkAi~~Y~kgFe 254 (374)
T PF13281_consen 226 IYKDLFLESNFTDRESLDKAIEWYRKGFE 254 (374)
T ss_pred HHHHHHHHcCccchHHHHHHHHHHHHHHc
Confidence 6532 1234555555555544
No 228
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=96.49 E-value=0.059 Score=51.06 Aligned_cols=207 Identities=12% Similarity=0.074 Sum_probs=109.7
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhHhcCCCCChHHHHHHHH
Q 038200 290 AMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMAN 369 (523)
Q Consensus 290 ~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 369 (523)
.+|.-..+..+...-+++-++..+ +.||-.+.-.++ +-.......++.++|++..+. ....+..--
T Consensus 173 ~IMq~AWRERnp~aRIkaA~eALe-------i~pdCAdAYILL-AEEeA~Ti~Eae~l~rqAvkA-----gE~~lg~s~- 238 (539)
T PF04184_consen 173 EIMQKAWRERNPQARIKAAKEALE-------INPDCADAYILL-AEEEASTIVEAEELLRQAVKA-----GEASLGKSQ- 238 (539)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHH-------hhhhhhHHHhhc-ccccccCHHHHHHHHHHHHHH-----HHHhhchhh-
Confidence 344444555666666666666666 456543333222 222345577888888877663 111111000
Q ss_pred HHHcCCChHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCC--ChhhHHHHHHHHHhcCC
Q 038200 370 LYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQ--DFSRYQFLLNVYAVAGQ 447 (523)
Q Consensus 370 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~--~~~~~~~l~~~~~~~g~ 447 (523)
.....|. .++....+ ...+-..+-..+..++.+.|+.++|.+.++.+.+..|. +..+...|+.+|...++
T Consensus 239 ~~~~~g~------~~e~~~~R--dt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~ 310 (539)
T PF04184_consen 239 FLQHHGH------FWEAWHRR--DTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQA 310 (539)
T ss_pred hhhcccc------hhhhhhcc--ccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCC
Confidence 0001111 11111110 02233333345566677778888888888888765553 44577778888888888
Q ss_pred hhHHHHHHHHHHhCCCccCCceeEEEe----CCeEEEEecC----C---CCchHHHHHHHHHHhcccCCccccc-ccccc
Q 038200 448 WEDVARVRELMKKRRMGRMPGCRLVDL----KEVVEKLKVG----H---FWRGGMKEEVNKMMECRQSRSLATV-SKQLP 515 (523)
Q Consensus 448 ~~~A~~~~~~m~~~~~~~~~~~~~~~~----~~~~~~~~~~----~---~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~ 515 (523)
+.++..++.+-.+...++...+++... ......|..+ . +....+++.+.+.++-+|+-+.=+. -+.++
T Consensus 311 Yad~q~lL~kYdDi~lpkSAti~YTaALLkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~YLLe~K~Li 390 (539)
T PF04184_consen 311 YADVQALLAKYDDISLPKSATICYTAALLKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPKYLLEMKSLI 390 (539)
T ss_pred HHHHHHHHHHhccccCCchHHHHHHHHHHHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCchhhhccCCCC
Confidence 888888877765544444444332111 1111112111 1 2335588999999999999876655 44444
Q ss_pred ccc
Q 038200 516 WHK 518 (523)
Q Consensus 516 ~~~ 518 (523)
+.|
T Consensus 391 lPP 393 (539)
T PF04184_consen 391 LPP 393 (539)
T ss_pred CCh
Confidence 544
No 229
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.48 E-value=0.14 Score=43.75 Aligned_cols=206 Identities=11% Similarity=0.115 Sum_probs=112.7
Q ss_pred HHHHHHHHHhccccHHHHHHHHHHHHHcCCCCchHHHHHHhhhhhhcCChHHHHHHHHhcCCCC--hHHHHHHHHHHHhc
Q 038200 221 TMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRN--LVCWNAMILGHCIH 298 (523)
Q Consensus 221 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~li~~~~~~ 298 (523)
.|.....+|....++++|...+.+..+. ...+...|. ....++.|.-+.+++.+-+ +..|+-....|..+
T Consensus 33 ~yekAAvafRnAk~feKakdcLlkA~~~-yEnnrslfh-------AAKayEqaamLake~~klsEvvdl~eKAs~lY~E~ 104 (308)
T KOG1585|consen 33 LYEKAAVAFRNAKKFEKAKDCLLKASKG-YENNRSLFH-------AAKAYEQAAMLAKELSKLSEVVDLYEKASELYVEC 104 (308)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHH-HHhcccHHH-------HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHh
Confidence 4555566666777777777666555432 111222221 1122444444455554422 22455555666666
Q ss_pred CChHHHHHHHHHHHhCCCCCCCcCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhHhcC----CCCChHHHHHHHHHHHcC
Q 038200 299 GKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYK----IKPNFAHYWCMANLYAGA 374 (523)
Q Consensus 299 g~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~ 374 (523)
|..+.|-..+++.-+. ....++++|+++|++...... ...-...|..+.+.|.+.
T Consensus 105 GspdtAAmaleKAak~---------------------lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl 163 (308)
T KOG1585|consen 105 GSPDTAAMALEKAAKA---------------------LENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRL 163 (308)
T ss_pred CCcchHHHHHHHHHHH---------------------hhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhh
Confidence 6666665555544331 223445555666555443211 111234556666777888
Q ss_pred CChHHHHHHHHhCCCCC--CCCCch-HHHHHHHHHHHHhcCCHHHHHHHHHHHhh----cCCCChhhHHHHHHHHHhcCC
Q 038200 375 ELTEEAEEILRKMPEDN--DNMSFE-SIMWVSLLSLCRFQGAVAMVERLAKSFVD----MDPQDFSRYQFLLNVYAVAGQ 447 (523)
Q Consensus 375 g~~~~A~~~~~~~~~~~--~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~p~~~~~~~~l~~~~~~~g~ 447 (523)
.++++|-..+.+-.... ..-.++ -..+...+-.+....++..|+..++.-.+ .+|++..+...|+.+|- .|+
T Consensus 164 ~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ayd-~gD 242 (308)
T KOG1585|consen 164 EKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAYD-EGD 242 (308)
T ss_pred HHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHhc-cCC
Confidence 88888776665433110 001111 12344555556667789999999988655 34667778888888874 578
Q ss_pred hhHHHHHHH
Q 038200 448 WEDVARVRE 456 (523)
Q Consensus 448 ~~~A~~~~~ 456 (523)
.+++.++..
T Consensus 243 ~E~~~kvl~ 251 (308)
T KOG1585|consen 243 IEEIKKVLS 251 (308)
T ss_pred HHHHHHHHc
Confidence 787776644
No 230
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=96.39 E-value=0.3 Score=37.41 Aligned_cols=141 Identities=13% Similarity=0.117 Sum_probs=90.0
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCCCcCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhHhcCCCCChHHHHHHHHHHHcC
Q 038200 295 HCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGA 374 (523)
Q Consensus 295 ~~~~g~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 374 (523)
+.-.|..++..++..+.... .+..-++.+|.-...+-+-+-..+.++.+-+-|.+.| +
T Consensus 12 ~ildG~V~qGveii~k~v~S--------sni~E~NWvICNiiDaa~C~yvv~~LdsIGkiFDis~--------------C 69 (161)
T PF09205_consen 12 RILDGDVKQGVEIIEKTVNS--------SNIKEYNWVICNIIDAADCDYVVETLDSIGKIFDISK--------------C 69 (161)
T ss_dssp HHHTT-HHHHHHHHHHHHHH--------S-HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS-GGG---------------
T ss_pred HHHhchHHHHHHHHHHHcCc--------CCccccceeeeecchhhchhHHHHHHHHHhhhcCchh--------------h
Confidence 45578889999999888774 3555677777666666677777788888766544333 3
Q ss_pred CChHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChhHHHHH
Q 038200 375 ELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARV 454 (523)
Q Consensus 375 g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 454 (523)
|+.......+-.+- .+...+...+.....+|+-+.-.+++..+.+.+..+|.....++.+|.+.|+..++.++
T Consensus 70 ~NlKrVi~C~~~~n-------~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~el 142 (161)
T PF09205_consen 70 GNLKRVIECYAKRN-------KLSEYVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANEL 142 (161)
T ss_dssp S-THHHHHHHHHTT----------HHHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHH
T ss_pred cchHHHHHHHHHhc-------chHHHHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHH
Confidence 33344333333332 12223445566778889999999999888765555888999999999999999999999
Q ss_pred HHHHHhCCCc
Q 038200 455 RELMKKRRMG 464 (523)
Q Consensus 455 ~~~m~~~~~~ 464 (523)
+.+.-++|++
T Consensus 143 l~~ACekG~k 152 (161)
T PF09205_consen 143 LKEACEKGLK 152 (161)
T ss_dssp HHHHHHTT-H
T ss_pred HHHHHHhchH
Confidence 9999988874
No 231
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=96.36 E-value=0.033 Score=42.33 Aligned_cols=90 Identities=12% Similarity=-0.018 Sum_probs=53.8
Q ss_pred HHHcCCChHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCC-C---ChhhHHHHHHHHHhc
Q 038200 370 LYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDP-Q---DFSRYQFLLNVYAVA 445 (523)
Q Consensus 370 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p-~---~~~~~~~l~~~~~~~ 445 (523)
++...|+++.|++.|.+.+.. .+.....||.-..+++-+|+.++|..-+++++++.- . -..+|..-+..|...
T Consensus 52 alaE~g~Ld~AlE~F~qal~l---~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~ 128 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCL---APERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLL 128 (175)
T ss_pred HHHhccchHHHHHHHHHHHHh---cccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHh
Confidence 455666666666666666532 223455666666666666666666666666666432 2 123455556666666
Q ss_pred CChhHHHHHHHHHHhCC
Q 038200 446 GQWEDVARVRELMKKRR 462 (523)
Q Consensus 446 g~~~~A~~~~~~m~~~~ 462 (523)
|+-+.|..-|+..-+.|
T Consensus 129 g~dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 129 GNDDAARADFEAAAQLG 145 (175)
T ss_pred CchHHHHHhHHHHHHhC
Confidence 77666666666665554
No 232
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.35 E-value=0.0086 Score=42.26 Aligned_cols=67 Identities=16% Similarity=0.203 Sum_probs=37.5
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcCCC-HHHHHHHHHHHhhcCcHHHHHHHHHHhhH
Q 038200 287 CWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPD-EITFIGVICACVRAELLTEGRKYFRQMID 353 (523)
Q Consensus 287 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 353 (523)
+++.+...|...|++++|+..|++..+....-+.-.|+ ..++..+..++...|++++|++++++..+
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 45666666667777777777666665421000001122 34566666667777777777777766554
No 233
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.30 E-value=1.5 Score=44.61 Aligned_cols=173 Identities=10% Similarity=0.000 Sum_probs=109.6
Q ss_pred HHHHHhhccCCchhHHHHhccCCCCCccc----HHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCcccHHHHHHHHHccC
Q 038200 26 NLLKHSADFGSPDYTVLVFKCINNPGTFC----VNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTG 101 (523)
Q Consensus 26 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~----~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~ 101 (523)
.-++.+.+...++-|..+-.... -+... .......+-+.|++++|.+-|-+-... +.|. .++.-+....
T Consensus 339 ~kL~iL~kK~ly~~Ai~LAk~~~-~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~s-----~Vi~kfLdaq 411 (933)
T KOG2114|consen 339 TKLDILFKKNLYKVAINLAKSQH-LDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEPS-----EVIKKFLDAQ 411 (933)
T ss_pred HHHHHHHHhhhHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CChH-----HHHHHhcCHH
Confidence 34455555566666666655422 12222 222334456778899888887766542 2332 3455555555
Q ss_pred CchHHHHHHHHHHHhCCCCCchHHHHHHHHHHccCChHHHHHHHhhcCCCCc-chHHHHHHHHHhcCCHHHHHHHHhcCC
Q 038200 102 CVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDL-ISWNSIVSGHVRSGDMSAAHELFDIMP 180 (523)
Q Consensus 102 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~ 180 (523)
+...-..+++.+.+.|+. +...-..|+.+|.+.++.++-.++.+....... .-....+..+.+.+-.++|..+-.+..
T Consensus 412 ~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~~g~~~fd~e~al~Ilr~snyl~~a~~LA~k~~ 490 (933)
T KOG2114|consen 412 RIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCDKGEWFFDVETALEILRKSNYLDEAELLATKFK 490 (933)
T ss_pred HHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCCCcceeeeHHHHHHHHHHhChHHHHHHHHHHhc
Confidence 666666778888888877 777778899999999999998888887762221 135566677777777777766655554
Q ss_pred CCChhHHHHHHHHHHhcCCchHHHHHHHHH
Q 038200 181 ERNVVSWNIMISGYSKSGNPGCSLKLFREM 210 (523)
Q Consensus 181 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m 210 (523)
. +...... .+-..+++++|++++..|
T Consensus 491 ~-he~vl~i---lle~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 491 K-HEWVLDI---LLEDLHNYEEALRYISSL 516 (933)
T ss_pred c-CHHHHHH---HHHHhcCHHHHHHHHhcC
Confidence 3 3333333 344578899999888765
No 234
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.28 E-value=1.5 Score=44.16 Aligned_cols=376 Identities=12% Similarity=0.060 Sum_probs=189.6
Q ss_pred hHHHHHHHHhCCCCCChhHHHHHHHH------hhccCCchhHHHHhccCC------CC-----------CcccHHHHHHH
Q 038200 5 LQIQAHLITSGLFFNNSFWTINLLKH------SADFGSPDYTVLVFKCIN------NP-----------GTFCVNAVIKA 61 (523)
Q Consensus 5 ~~i~~~~~~~g~~~~~~~~~~~l~~~------~~~~g~~~~A~~~~~~~~------~~-----------~~~~~~~ll~~ 61 (523)
+.|.+.+...+-+ -.|.....|+++ +.+.-++++-.++...+. .+ ...+-..+++-
T Consensus 368 ~aV~~CI~aA~~e-f~pe~QK~LL~AAsfGk~~l~~~~~d~~~~v~~~lrVln~~r~~~~gIplT~~qy~~l~~~~vi~R 446 (829)
T KOG2280|consen 368 KAVDDCIEAACDE-FQPEEQKSLLRAASFGKASLRTPNPDEYMRVCRELRVLNALRDVRIGIPLTHEQYRHLSEEVVIDR 446 (829)
T ss_pred HHHHHHHHHhhhc-cCHHHHHHHHHHHhhcccccccCChHHHHHHHHHHHHHhhhcccccCccccHHHHhhhchhhhhHH
Confidence 3566677777777 778888888864 234456666655554432 11 11234467788
Q ss_pred HHhCCCchHHHHHHHHHHHCCCCCCcccHHHHHHHHHccCCc--hHHHHHHHHHHHhCCCCCchHHHHHHHHHHccCChH
Q 038200 62 YSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCV--ERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMD 139 (523)
Q Consensus 62 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~--~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 139 (523)
+...+.+..|+++-+.+...-..- ...|.....-+.+..+. +++.+..++=+..... .-..|..+..-...+|+.+
T Consensus 447 l~~r~~Y~vaIQva~~l~~p~~~~-~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~~~-~~iSy~~iA~~Ay~~GR~~ 524 (829)
T KOG2280|consen 447 LVDRHLYSVAIQVAKLLNLPESQG-DRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAKLT-PGISYAAIARRAYQEGRFE 524 (829)
T ss_pred HHhcchhHHHHHHHHHhCCccccc-cHHHHHHHHHHHhccCccchHHHHHHHHHhcccCC-CceeHHHHHHHHHhcCcHH
Confidence 888999999999988886432222 45566666666554322 2233333322222223 4456777777777899999
Q ss_pred HHHHHHhhcCCC--------CcchHHHHHHHHHhcCCHHHHHHHHhcCCCC-ChhHHHHHHHHHHhcCCchHHHHHHHHH
Q 038200 140 CARNMFVQMSPR--------DLISWNSIVSGHVRSGDMSAAHELFDIMPER-NVVSWNIMISGYSKSGNPGCSLKLFREM 210 (523)
Q Consensus 140 ~A~~~~~~~~~~--------~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m 210 (523)
.|..+++.=+.. +..-+...+.-....||.+....++-.+.+. +...+ +....+...|..+|.+.
T Consensus 525 LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~~~s~l------~~~l~~~p~a~~lY~~~ 598 (829)
T KOG2280|consen 525 LARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKLNRSSL------FMTLRNQPLALSLYRQF 598 (829)
T ss_pred HHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHH------HHHHHhchhhhHHHHHH
Confidence 999988764321 2233444555556666666666665554421 11111 11223445555666555
Q ss_pred HHCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHH-HH-cCCCCchHHHHHHhhhhhhcCChHHH----------HHHHH
Q 038200 211 MKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYT-VR-TSLKPNIILDTALIDLYSKCQKVEVA----------QRVFD 278 (523)
Q Consensus 211 ~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~-~~-~~~~~~~~~~~~l~~~~~~~~~~~~a----------~~~~~ 278 (523)
.+.. |..+ +-..|....+...+..+.-+- .. ..+.+-........+.+.+.....-. +.+.+
T Consensus 599 ~r~~---~~~~---l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~lk~~a~~~a~sk~~s~e~ka~ed~~kLl~lQ~ 672 (829)
T KOG2280|consen 599 MRHQ---DRAT---LYDFYNQDDNHQALASFHLQASYAAETIEGRIPALKTAANAFAKSKEKSFEAKALEDQMKLLKLQR 672 (829)
T ss_pred HHhh---chhh---hhhhhhcccchhhhhhhhhhhhhhhhhhcccchhHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHH
Confidence 4421 1111 111122222222111111110 00 00111111222223333333221111 11111
Q ss_pred hcCC-----CChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhH
Q 038200 279 SMAD-----RNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMID 353 (523)
Q Consensus 279 ~~~~-----~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 353 (523)
.+.. -.-.+.+--+.-+...|+..+|.++-.+.. -||...|-.-+.+++..+++++-+++-+..+
T Consensus 673 ~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk---------ipdKr~~wLk~~aLa~~~kweeLekfAkskk- 742 (829)
T KOG2280|consen 673 TLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK---------IPDKRLWWLKLTALADIKKWEELEKFAKSKK- 742 (829)
T ss_pred HHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC---------CcchhhHHHHHHHHHhhhhHHHHHHHHhccC-
Confidence 1111 011233444555566677777766655442 3666666666677777777766555444332
Q ss_pred hcCCCCChHHHHHHHHHHHcCCChHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHhcCCHHHHHHHHH
Q 038200 354 FYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAK 422 (523)
Q Consensus 354 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 422 (523)
++.-|.-.+.+|.+.|+.++|.+++-+... .. -...+|.+.|++.+|.+..-
T Consensus 743 ------sPIGy~PFVe~c~~~~n~~EA~KYiprv~~----l~-------ekv~ay~~~~~~~eAad~A~ 794 (829)
T KOG2280|consen 743 ------SPIGYLPFVEACLKQGNKDEAKKYIPRVGG----LQ-------EKVKAYLRVGDVKEAADLAA 794 (829)
T ss_pred ------CCCCchhHHHHHHhcccHHHHhhhhhccCC----hH-------HHHHHHHHhccHHHHHHHHH
Confidence 234455567777777777777777777763 22 23445666666666655543
No 235
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=96.18 E-value=0.028 Score=48.82 Aligned_cols=109 Identities=12% Similarity=0.050 Sum_probs=83.9
Q ss_pred HHHHhccCC--CCCcccHHHHHHHHHhC-----CCchHHHHHHHHHHHCCCCCCcccHHHHHHHHHccC-----------
Q 038200 40 TVLVFKCIN--NPGTFCVNAVIKAYSNS-----CVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTG----------- 101 (523)
Q Consensus 40 A~~~~~~~~--~~~~~~~~~ll~~~~~~-----~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~----------- 101 (523)
.++.|...+ ++|..+|-..+..+... +..+-....++.|.+.|+.-|..+|+.|++.+-+..
T Consensus 53 ~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F 132 (406)
T KOG3941|consen 53 VEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVF 132 (406)
T ss_pred hhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHH
Confidence 345566665 57888898888877643 566667777899999999999999999999876532
Q ss_pred -----CchHHHHHHHHHHHhCCCCCchHHHHHHHHHHccCCh-HHHHHHHhhc
Q 038200 102 -----CVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAM-DCARNMFVQM 148 (523)
Q Consensus 102 -----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~~ 148 (523)
+-+-+..++++|...|+.||..+-..|++++.+.+-. .+..+++-.|
T Consensus 133 ~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWm 185 (406)
T KOG3941|consen 133 LHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWM 185 (406)
T ss_pred hhCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccccHHHHHHHHHhh
Confidence 2355788999999999999999999999999987743 3444444444
No 236
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.16 E-value=0.093 Score=46.95 Aligned_cols=162 Identities=12% Similarity=0.040 Sum_probs=118.5
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCCCcCC-CHHHHHHHHHHHhhcCcHHHHHHHHHHhhHhcCCCCChHHHHHH----HH
Q 038200 295 HCIHGKPEEGIKLFTALVNGTVAGGSISP-DEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCM----AN 369 (523)
Q Consensus 295 ~~~~g~~~~a~~~~~~m~~~~~~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l----~~ 369 (523)
..-.|+.-+|...|+++.+ --| |...+...=.+|...|+.+.-...++++.. ...|+...|..+ .-
T Consensus 113 ~~~~g~~h~a~~~wdklL~-------d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip--~wn~dlp~~sYv~GmyaF 183 (491)
T KOG2610|consen 113 LWGRGKHHEAAIEWDKLLD-------DYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIP--KWNADLPCYSYVHGMYAF 183 (491)
T ss_pred hhccccccHHHHHHHHHHH-------hCchhhhhhhhhhhHHHhccchhhhhhHHHHhcc--ccCCCCcHHHHHHHHHHh
Confidence 3468899999999999988 444 556677777788999999999999998887 456666555443 44
Q ss_pred HHHcCCChHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCC----ChhhHHHHHHHHHhc
Q 038200 370 LYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQ----DFSRYQFLLNVYAVA 445 (523)
Q Consensus 370 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~----~~~~~~~l~~~~~~~ 445 (523)
++..+|-+++|++.-++..+. -+.|.-...++...+-..|+.+++.++..+-...-.. -..-|...+-.+...
T Consensus 184 gL~E~g~y~dAEk~A~ralqi---N~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~ 260 (491)
T KOG2610|consen 184 GLEECGIYDDAEKQADRALQI---NRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEG 260 (491)
T ss_pred hHHHhccchhHHHHHHhhccC---CCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcc
Confidence 556899999999999998864 2456666677777788889999998887765442211 123455666677788
Q ss_pred CChhHHHHHHHHHHhCCCccCCc
Q 038200 446 GQWEDVARVRELMKKRRMGRMPG 468 (523)
Q Consensus 446 g~~~~A~~~~~~m~~~~~~~~~~ 468 (523)
+.++.|+++|++=.-+...++.+
T Consensus 261 aeye~aleIyD~ei~k~l~k~Da 283 (491)
T KOG2610|consen 261 AEYEKALEIYDREIWKRLEKDDA 283 (491)
T ss_pred cchhHHHHHHHHHHHHHhhccch
Confidence 99999999999766555555554
No 237
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=96.10 E-value=0.61 Score=45.91 Aligned_cols=163 Identities=15% Similarity=0.157 Sum_probs=101.3
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCCCcCCCH-----HHHHHHHHHHhh----cCcHHHHHHHHHHhhHhcCCCCCh
Q 038200 291 MILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDE-----ITFIGVICACVR----AELLTEGRKYFRQMIDFYKIKPNF 361 (523)
Q Consensus 291 li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~p~~-----~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~ 361 (523)
++....=.|+-+.+++++.+..+.+ ++.-.. ..|...+..++. ....+.|.++++.+.+. . |+.
T Consensus 194 ll~~vGF~gdR~~GL~~L~~~~~~~----~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--y-P~s 266 (468)
T PF10300_consen 194 LLSFVGFSGDRELGLRLLWEASKSE----NIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--Y-PNS 266 (468)
T ss_pred HHhhcCcCCcHHHHHHHHHHHhccC----CcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--C-CCc
Confidence 3444444566666666666554432 111111 123333333332 45778899999999884 3 454
Q ss_pred HHH-HHHHHHHHcCCChHHHHHHHHhCCCCCCCCC-chHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhhHHHHH
Q 038200 362 AHY-WCMANLYAGAELTEEAEEILRKMPEDNDNMS-FESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLL 439 (523)
Q Consensus 362 ~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 439 (523)
..| -.-.+.+...|++++|++.|++........+ .....+.-+...+....++++|...+..+.+...-+...|..+.
T Consensus 267 ~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~ 346 (468)
T PF10300_consen 267 ALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAYLA 346 (468)
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHHHHH
Confidence 444 3445667788999999999998764221111 23445555666778889999999999999987665555666554
Q ss_pred -HHHHhcCCh-------hHHHHHHHHHHh
Q 038200 440 -NVYAVAGQW-------EDVARVRELMKK 460 (523)
Q Consensus 440 -~~~~~~g~~-------~~A~~~~~~m~~ 460 (523)
-++...|+. ++|.++|.+.-.
T Consensus 347 a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 347 AACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 445567888 888888887643
No 238
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.05 E-value=0.058 Score=47.13 Aligned_cols=58 Identities=16% Similarity=0.012 Sum_probs=29.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhcCCC---ChhhHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 038200 404 LLSLCRFQGAVAMVERLAKSFVDMDPQ---DFSRYQFLLNVYAVAGQWEDVARVRELMKKR 461 (523)
Q Consensus 404 l~~~~~~~g~~~~a~~~~~~~~~~~p~---~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 461 (523)
|..++...|+++.|..+|..+.+-.|+ -|+.+.-|+.+..+.|+.++|...|+++.++
T Consensus 184 LGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 184 LGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 444455555555555555555543332 3344555555555555555555555555443
No 239
>PRK11906 transcriptional regulator; Provisional
Probab=96.05 E-value=0.17 Score=47.98 Aligned_cols=81 Identities=11% Similarity=0.035 Sum_probs=47.5
Q ss_pred hHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChhHHHHHHH
Q 038200 377 TEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRE 456 (523)
Q Consensus 377 ~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 456 (523)
..+|.+..++..+. -+.|+.....+..+....|+++.|...|+++..++|+.+.+|...+..+.-.|+.++|.+.++
T Consensus 320 ~~~a~~~A~rAvel---d~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~ 396 (458)
T PRK11906 320 AQKALELLDYVSDI---TTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICID 396 (458)
T ss_pred HHHHHHHHHHHHhc---CCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 34455555555543 133445544455555555556666666666666666666666666666666666666666666
Q ss_pred HHHh
Q 038200 457 LMKK 460 (523)
Q Consensus 457 ~m~~ 460 (523)
+..+
T Consensus 397 ~alr 400 (458)
T PRK11906 397 KSLQ 400 (458)
T ss_pred HHhc
Confidence 5433
No 240
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=95.91 E-value=0.32 Score=38.30 Aligned_cols=55 Identities=15% Similarity=0.030 Sum_probs=31.5
Q ss_pred HhhcCcHHHHHHHHHHhhHhcCCCC-ChHHHHHHHHHHHcCCChHHHHHHHHhCCC
Q 038200 335 CVRAELLTEGRKYFRQMIDFYKIKP-NFAHYWCMANLYAGAELTEEAEEILRKMPE 389 (523)
Q Consensus 335 ~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 389 (523)
..+.|++++|.+.|+.+...+...| .......|+.+|.+.|++++|...+++.++
T Consensus 20 ~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFir 75 (142)
T PF13512_consen 20 ALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIR 75 (142)
T ss_pred HHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 3455666666666666666433322 233444566666666666666666666554
No 241
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.82 E-value=0.79 Score=40.74 Aligned_cols=124 Identities=17% Similarity=0.148 Sum_probs=77.1
Q ss_pred HHhhcCcHHHHHHHHHHhhHhcCCCCChHHHHHHHHHHHcCCChHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHhcCC
Q 038200 334 ACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGA 413 (523)
Q Consensus 334 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 413 (523)
.....|++.+|...|...... .+-+...-..++.+|...|+.+.|..++..+..... .........-+..+.+..+
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~--~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~--~~~~~~l~a~i~ll~qaa~ 218 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQA--APENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQ--DKAAHGLQAQIELLEQAAA 218 (304)
T ss_pred hhhhccchhhHHHHHHHHHHh--CcccchHHHHHHHHHHHcCChHHHHHHHHhCcccch--hhHHHHHHHHHHHHHHHhc
Confidence 345677888888888887763 333456666778888888888888888888874311 1111111111222222222
Q ss_pred HHHHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 038200 414 VAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRR 462 (523)
Q Consensus 414 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 462 (523)
..+... ++.-...+|+|...-..|+..|...|+.++|.+.+-.+.+++
T Consensus 219 ~~~~~~-l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d 266 (304)
T COG3118 219 TPEIQD-LQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRD 266 (304)
T ss_pred CCCHHH-HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 222222 222334678888888888888888899988888777775543
No 242
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.80 E-value=0.15 Score=44.66 Aligned_cols=109 Identities=11% Similarity=0.041 Sum_probs=78.4
Q ss_pred HHHHHHHHHHhhcCcHHHHHHHHHHhhHhcCCC-CChHHHHHHHHHHHcCCChHHHHHHHHhCCCCCCCCCchHHHHHHH
Q 038200 326 ITFIGVICACVRAELLTEGRKYFRQMIDFYKIK-PNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSL 404 (523)
Q Consensus 326 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l 404 (523)
..|+.-+.. .+.|++..|...|....+.|.-. -.+..+--|..++...|++++|..+|..+.+.-...+--+..+..+
T Consensus 143 ~~Y~~A~~~-~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKl 221 (262)
T COG1729 143 KLYNAALDL-YKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKL 221 (262)
T ss_pred HHHHHHHHH-HHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHH
Confidence 356665554 45677999999999998853111 1234555688999999999999999988875422222224566777
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhcCCCChhhH
Q 038200 405 LSLCRFQGAVAMVERLAKSFVDMDPQDFSRY 435 (523)
Q Consensus 405 ~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 435 (523)
.....+.|+.++|...++++.+.-|+.+.+-
T Consensus 222 g~~~~~l~~~d~A~atl~qv~k~YP~t~aA~ 252 (262)
T COG1729 222 GVSLGRLGNTDEACATLQQVIKRYPGTDAAK 252 (262)
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHCCCCHHHH
Confidence 7788899999999999999999888765443
No 243
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.76 E-value=0.43 Score=42.94 Aligned_cols=182 Identities=11% Similarity=0.071 Sum_probs=124.8
Q ss_pred hcCChHHHHHHHHhcCC---CChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcCCCHHHHH----HHHHHHhhc
Q 038200 266 KCQKVEVAQRVFDSMAD---RNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFI----GVICACVRA 338 (523)
Q Consensus 266 ~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~----~ll~~~~~~ 338 (523)
..|+..+|-..++++.+ .|..++...=.+|.-.|+.+.-...++++... ..||...|. .+.-++...
T Consensus 115 ~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~------wn~dlp~~sYv~GmyaFgL~E~ 188 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK------WNADLPCYSYVHGMYAFGLEEC 188 (491)
T ss_pred ccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccc------cCCCCcHHHHHHHHHHhhHHHh
Confidence 35777888788888865 47788998999999999999999999998876 245543332 333455688
Q ss_pred CcHHHHHHHHHHhhHhcCCCCChHHHHHHHHHHHcCCChHHHHHHHHhCCCCCCCCCch----HHHHHHHHHHHHhcCCH
Q 038200 339 ELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFE----SIMWVSLLSLCRFQGAV 414 (523)
Q Consensus 339 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~ 414 (523)
|-+++|.+.-++..+. .+.|.-.-.++...+-..|+..++.++..+-... .... ...|....-.+...+.+
T Consensus 189 g~y~dAEk~A~ralqi--N~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~---Wr~s~mlasHNyWH~Al~~iE~aey 263 (491)
T KOG2610|consen 189 GIYDDAEKQADRALQI--NRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDD---WRQSWMLASHNYWHTALFHIEGAEY 263 (491)
T ss_pred ccchhHHHHHHhhccC--CCcchHHHHHHHHHHHhcchhhhHHHHHHhcccc---hhhhhHHHhhhhHHHHHhhhcccch
Confidence 9999999999888763 3445666677888899999999999998887642 2211 22333444455667899
Q ss_pred HHHHHHHHHHh--hcCCCCh---hhHHHHHHHHHhcCChhHHHHHHHHH
Q 038200 415 AMVERLAKSFV--DMDPQDF---SRYQFLLNVYAVAGQWEDVARVRELM 458 (523)
Q Consensus 415 ~~a~~~~~~~~--~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~m 458 (523)
+.|+++|+.-+ +++.+|. ..|..+-.+..+...|.+...+-+.+
T Consensus 264 e~aleIyD~ei~k~l~k~Da~a~~~~ld~dgv~~~~d~~~kld~la~~l 312 (491)
T KOG2610|consen 264 EKALEIYDREIWKRLEKDDAVARDVYLDLDGVDLRSDLWRKLDKLADSL 312 (491)
T ss_pred hHHHHHHHHHHHHHhhccchhhhhhhhhhhhHHhHHHHHHHHHhhhhhh
Confidence 99999997644 3555554 33344444455555555554444433
No 244
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=95.76 E-value=0.11 Score=49.25 Aligned_cols=61 Identities=18% Similarity=0.174 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHhhcCcHHHHHHHHHHhhHhcCCCCCh----HHHHHHHHHHHcCCChHHHHHHHHhCC
Q 038200 325 EITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNF----AHYWCMANLYAGAELTEEAEEILRKMP 388 (523)
Q Consensus 325 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~ 388 (523)
...++.+..+|.+.|++++|+..|++..+ +.|+. .+|..+..+|...|+.++|++.+++.+
T Consensus 75 a~a~~NLG~AL~~lGryeEAIa~f~rALe---L~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrAL 139 (453)
T PLN03098 75 AEDAVNLGLSLFSKGRVKDALAQFETALE---LNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTAL 139 (453)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHh---hCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 45566666666666666666666666655 23442 235666666666666666666666666
No 245
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.75 E-value=1.2 Score=38.45 Aligned_cols=214 Identities=13% Similarity=0.105 Sum_probs=119.5
Q ss_pred HHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHcCCCCchHHHHHHhhhhh
Q 038200 186 SWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYS 265 (523)
Q Consensus 186 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 265 (523)
.|..-..+|....++++|-..+.+..+. ...+...|. ....++.|.-+.+++.+. +--...|+.....|.
T Consensus 33 ~yekAAvafRnAk~feKakdcLlkA~~~-yEnnrslfh-------AAKayEqaamLake~~kl--sEvvdl~eKAs~lY~ 102 (308)
T KOG1585|consen 33 LYEKAAVAFRNAKKFEKAKDCLLKASKG-YENNRSLFH-------AAKAYEQAAMLAKELSKL--SEVVDLYEKASELYV 102 (308)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHH-HHhcccHHH-------HHHHHHHHHHHHHHHHHh--HHHHHHHHHHHHHHH
Confidence 3555566788888888888877766532 122222111 223345555555555542 223455666777888
Q ss_pred hcCChHHHHHHHHhcCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcCCCHHHHHHHHHHHhhcCcHHHHH
Q 038200 266 KCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGR 345 (523)
Q Consensus 266 ~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~ 345 (523)
.+|..+.|-..+++..+ ....-++++|+++|++...--..+...+--...+..+-..+.+...+++|-
T Consensus 103 E~GspdtAAmaleKAak------------~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa 170 (308)
T KOG1585|consen 103 ECGSPDTAAMALEKAAK------------ALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAA 170 (308)
T ss_pred HhCCcchHHHHHHHHHH------------HhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHH
Confidence 88888777666665422 123456667777776654421000001111223444555667777777776
Q ss_pred HHHHHhhHh---cCCCCC-hHHHHHHHHHHHcCCChHHHHHHHHhCCCCCCCC-CchHHHHHHHHHHHHhcCCHHHHHHH
Q 038200 346 KYFRQMIDF---YKIKPN-FAHYWCMANLYAGAELTEEAEEILRKMPEDNDNM-SFESIMWVSLLSLCRFQGAVAMVERL 420 (523)
Q Consensus 346 ~~~~~~~~~---~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~a~~~ 420 (523)
..+.+-..- ..--++ -..|-..|-.|.-..++..|.+.+++--+.+.-. +-+..+...|+.+| ..|+.+++..+
T Consensus 171 ~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~~~kv 249 (308)
T KOG1585|consen 171 TAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEEIKKV 249 (308)
T ss_pred HHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHHHHHH
Confidence 555543211 011122 2345566667777789999999999844322112 23567777888776 56777777666
Q ss_pred HH
Q 038200 421 AK 422 (523)
Q Consensus 421 ~~ 422 (523)
+.
T Consensus 250 l~ 251 (308)
T KOG1585|consen 250 LS 251 (308)
T ss_pred Hc
Confidence 53
No 246
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=95.70 E-value=0.15 Score=39.62 Aligned_cols=78 Identities=9% Similarity=0.111 Sum_probs=41.2
Q ss_pred hHHHHHHHHHHhcCCchHHHHHHHHHH---------------HCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHc-
Q 038200 185 VSWNIMISGYSKSGNPGCSLKLFREMM---------------KSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRT- 248 (523)
Q Consensus 185 ~~~~~li~~~~~~~~~~~a~~~~~~m~---------------~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~- 248 (523)
.++.++|.++++.|+.+....+++..- .....|+..+..+++.+|+..|++..|.++.+...+.
T Consensus 3 ~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y 82 (126)
T PF12921_consen 3 ELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKY 82 (126)
T ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHc
Confidence 445555555555555555555554331 1123455666666666666666666666666655543
Q ss_pred CCCCchHHHHHHhh
Q 038200 249 SLKPNIILDTALID 262 (523)
Q Consensus 249 ~~~~~~~~~~~l~~ 262 (523)
+++.+..+|..|++
T Consensus 83 ~I~i~~~~W~~Ll~ 96 (126)
T PF12921_consen 83 PIPIPKEFWRRLLE 96 (126)
T ss_pred CCCCCHHHHHHHHH
Confidence 44444555555554
No 247
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=95.67 E-value=0.66 Score=42.28 Aligned_cols=45 Identities=16% Similarity=0.284 Sum_probs=21.2
Q ss_pred HhcCCchHHHHHHHHHHHCC--CCCCHHHHHHHHHHHhccccHHHHH
Q 038200 195 SKSGNPGCSLKLFREMMKSG--FRGNDKTMASVLTACGRSARFNEGR 239 (523)
Q Consensus 195 ~~~~~~~~a~~~~~~m~~~~--~~p~~~~~~~ll~~~~~~~~~~~a~ 239 (523)
....+.++|+..|.+-..+- ...-..+|..+..+.++.|.++++.
T Consensus 17 y~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL 63 (518)
T KOG1941|consen 17 YQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEML 63 (518)
T ss_pred hcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHH
Confidence 34455666666555544321 1112234455555555555555444
No 248
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=95.61 E-value=0.48 Score=45.94 Aligned_cols=155 Identities=14% Similarity=0.109 Sum_probs=77.6
Q ss_pred HHHHhCCCchHHHHHHH--HHHHCCCCCCcccHHHHHHHHHccCCchHHHHHHHHHHHhCCCCCchHHHHHHHHHHccCC
Q 038200 60 KAYSNSCVPDQGVVFYL--QMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGA 137 (523)
Q Consensus 60 ~~~~~~~~~~~a~~~~~--~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 137 (523)
....-+++++.+.+..+ .+.. .++ ....+.++..+-+.|..+.|+++... . ..-.....+.|+
T Consensus 269 k~av~~~d~~~v~~~i~~~~ll~-~i~--~~~~~~i~~fL~~~G~~e~AL~~~~D---------~---~~rFeLAl~lg~ 333 (443)
T PF04053_consen 269 KTAVLRGDFEEVLRMIAASNLLP-NIP--KDQGQSIARFLEKKGYPELALQFVTD---------P---DHRFELALQLGN 333 (443)
T ss_dssp HHHHHTT-HHH-----HHHHTGG-G----HHHHHHHHHHHHHTT-HHHHHHHSS----------H---HHHHHHHHHCT-
T ss_pred HHHHHcCChhhhhhhhhhhhhcc-cCC--hhHHHHHHHHHHHCCCHHHHHhhcCC---------h---HHHhHHHHhcCC
Confidence 33455667777665554 1221 112 33366667777777777777666322 2 223445566677
Q ss_pred hHHHHHHHhhcCCCCcchHHHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCC
Q 038200 138 MDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRG 217 (523)
Q Consensus 138 ~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p 217 (523)
++.|.++.++.. +...|..|.....+.|+++-|+..|.+... |..|+-.|.-.|+.++..++.+.....|
T Consensus 334 L~~A~~~a~~~~--~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d-----~~~L~lLy~~~g~~~~L~kl~~~a~~~~--- 403 (443)
T PF04053_consen 334 LDIALEIAKELD--DPEKWKQLGDEALRQGNIELAEECYQKAKD-----FSGLLLLYSSTGDREKLSKLAKIAEERG--- 403 (443)
T ss_dssp HHHHHHHCCCCS--THHHHHHHHHHHHHTTBHHHHHHHHHHCT------HHHHHHHHHHCT-HHHHHHHHHHHHHTT---
T ss_pred HHHHHHHHHhcC--cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC-----ccccHHHHHHhCCHHHHHHHHHHHHHcc---
Confidence 777766666554 444666666666666666666666666543 4445555566666665555555555544
Q ss_pred CHHHHHHHHHHHhccccHHHHHHHH
Q 038200 218 NDKTMASVLTACGRSARFNEGRSVH 242 (523)
Q Consensus 218 ~~~~~~~ll~~~~~~~~~~~a~~~~ 242 (523)
-++....++.-.|+.++..+++
T Consensus 404 ---~~n~af~~~~~lgd~~~cv~lL 425 (443)
T PF04053_consen 404 ---DINIAFQAALLLGDVEECVDLL 425 (443)
T ss_dssp ----HHHHHHHHHHHT-HHHHHHHH
T ss_pred ---CHHHHHHHHHHcCCHHHHHHHH
Confidence 1333334444445555555444
No 249
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=95.59 E-value=1.4 Score=38.39 Aligned_cols=55 Identities=11% Similarity=0.130 Sum_probs=41.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhcCCCC---hhhHHHHHHHHHhcCChhHHHHHHHHH
Q 038200 404 LLSLCRFQGAVAMVERLAKSFVDMDPQD---FSRYQFLLNVYAVAGQWEDVARVRELM 458 (523)
Q Consensus 404 l~~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~m 458 (523)
+...|.+.|.+..|..-++.+++.-|+. ...+..+..+|.+.|..++|.+.-.-+
T Consensus 173 IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl 230 (254)
T COG4105 173 IARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVL 230 (254)
T ss_pred HHHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHH
Confidence 4456788888888888888888865553 345666778888899988888876655
No 250
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=95.56 E-value=1.4 Score=38.31 Aligned_cols=122 Identities=15% Similarity=0.095 Sum_probs=53.9
Q ss_pred HHhhcCcHHHHHHHHHHhhHhcCC--CCChHHHHHHHHHHHcCCChHHHHHHHHhCCCCCCCCCc-hHHHHHHHHHHHHh
Q 038200 334 ACVRAELLTEGRKYFRQMIDFYKI--KPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSF-ESIMWVSLLSLCRF 410 (523)
Q Consensus 334 ~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~ 410 (523)
.+...|+++.+...+.+.... .. ......+......+...++.+.+...+.+.... ... ....+..+...+..
T Consensus 139 ~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~~~~~~~~ 214 (291)
T COG0457 139 ALYELGDYEEALELYEKALEL-DPELNELAEALLALGALLEALGRYEEALELLEKALKL---NPDDDAEALLNLGLLYLK 214 (291)
T ss_pred HHHHcCCHHHHHHHHHHHHhc-CCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhh---CcccchHHHHHhhHHHHH
Confidence 344455555555555554221 10 011222222233344445555555555554432 111 23344444444555
Q ss_pred cCCHHHHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHH
Q 038200 411 QGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMK 459 (523)
Q Consensus 411 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 459 (523)
.++.+.+...+.......|.....+..+...+...|.++++...+.+..
T Consensus 215 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (291)
T COG0457 215 LGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKAL 263 (291)
T ss_pred cccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHH
Confidence 5555555555555555555433344444444444444555555555443
No 251
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=95.47 E-value=4.7 Score=46.41 Aligned_cols=316 Identities=9% Similarity=0.001 Sum_probs=176.4
Q ss_pred HHHHHHHccCChHHHHHHHhhc----CCC--CcchHHHHHHHHHhcCCHHHHHHHHhc-CCCCChhHHHHHHHHHHhcCC
Q 038200 127 SLINMYGCFGAMDCARNMFVQM----SPR--DLISWNSIVSGHVRSGDMSAAHELFDI-MPERNVVSWNIMISGYSKSGN 199 (523)
Q Consensus 127 ~l~~~~~~~g~~~~A~~~~~~~----~~~--~~~~~~~ll~~~~~~~~~~~a~~~~~~-~~~~~~~~~~~li~~~~~~~~ 199 (523)
.+..+-.+++.+..|...+++- .+. ....|-.+...|+..+++|....+... ...|+. ..-|.-....|+
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a~~sl---~~qil~~e~~g~ 1464 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFADPSL---YQQILEHEASGN 1464 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhcCccH---HHHHHHHHhhcc
Confidence 4555666788999999999883 222 122344444488888888888777763 333332 234445677899
Q ss_pred chHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHcCCCCch-HHHHHHhhhhhhcCChHHHHHHHH
Q 038200 200 PGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNI-ILDTALIDLYSKCQKVEVAQRVFD 278 (523)
Q Consensus 200 ~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~ 278 (523)
+..|...|+.+.+.+ ++...+++.++......|.++...-..+-..... .+.. ..++.=+.+--+.++++.......
T Consensus 1465 ~~da~~Cye~~~q~~-p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~-se~~~~~~s~~~eaaW~l~qwD~~e~~l~ 1542 (2382)
T KOG0890|consen 1465 WADAAACYERLIQKD-PDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINR-SEEVDELNSLGVEAAWRLSQWDLLESYLS 1542 (2382)
T ss_pred HHHHHHHHHHhhcCC-CccccchhhHHHhhhcccchhHHHhhhcchhhcc-CHHHHHHHHHHHHHHhhhcchhhhhhhhh
Confidence 999999999999874 3446778888888888888877776555444332 2222 223333444467777777777666
Q ss_pred hcCCCChHHHHHH--HHHHHhcC--ChHHHHHHHHHHHhCCCCCCCcCCC---------HHHHHHHHHHHhhcCcHHHHH
Q 038200 279 SMADRNLVCWNAM--ILGHCIHG--KPEEGIKLFTALVNGTVAGGSISPD---------EITFIGVICACVRAELLTEGR 345 (523)
Q Consensus 279 ~~~~~~~~~~~~l--i~~~~~~g--~~~~a~~~~~~m~~~~~~~~~~~p~---------~~~~~~ll~~~~~~~~~~~a~ 345 (523)
..+..+|... +....+.. +.-.-.+..+.+.+.- +.|- ...|..++....- .
T Consensus 1543 ---~~n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~-----i~~lsa~s~~~Sy~~~Y~~~~kLH~l-------~ 1607 (2382)
T KOG0890|consen 1543 ---DRNIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELV-----IENLSACSIEGSYVRSYEILMKLHLL-------L 1607 (2382)
T ss_pred ---cccccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHh-----hhhHHHhhccchHHHHHHHHHHHHHH-------H
Confidence 4445555444 22222222 2222223333333321 1110 0122222221111 0
Q ss_pred HHHHHhhHhcCCCCC------hHHHHHHHHHHHcCCChHHHHHHHHh----CCCCCCCCC-chHHHHHHHHHHHHhcCCH
Q 038200 346 KYFRQMIDFYKIKPN------FAHYWCMANLYAGAELTEEAEEILRK----MPEDNDNMS-FESIMWVSLLSLCRFQGAV 414 (523)
Q Consensus 346 ~~~~~~~~~~~~~~~------~~~~~~l~~~~~~~g~~~~A~~~~~~----~~~~~~~~~-~~~~~~~~l~~~~~~~g~~ 414 (523)
++-+......++.++ ..-|..-+..-....+..+-+--+++ ... +.+.. --..+|......++..|.+
T Consensus 1608 el~~~~~~l~~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~-~~~~~~~~ge~wLqsAriaR~aG~~ 1686 (2382)
T KOG0890|consen 1608 ELENSIEELKKVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRM-RSNLKSRLGECWLQSARIARLAGHL 1686 (2382)
T ss_pred HHHHHHHHhhccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhc-cccccchhHHHHHHHHHHHHhcccH
Confidence 111111111122222 12222111111111111221111111 110 10112 2356888888899999999
Q ss_pred HHHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCcc
Q 038200 415 AMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGR 465 (523)
Q Consensus 415 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~ 465 (523)
+.|...+-.+.+..+ +.++...+..+...|+...|+.++++....+.+.
T Consensus 1687 q~A~nall~A~e~r~--~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~ 1735 (2382)
T KOG0890|consen 1687 QRAQNALLNAKESRL--PEIVLERAKLLWQTGDELNALSVLQEILSKNFPD 1735 (2382)
T ss_pred HHHHHHHHhhhhccc--chHHHHHHHHHHhhccHHHHHHHHHHHHHhhccc
Confidence 999999888888765 5689999999999999999999999988765533
No 252
>PRK11906 transcriptional regulator; Provisional
Probab=95.40 E-value=1.1 Score=42.81 Aligned_cols=160 Identities=7% Similarity=0.020 Sum_probs=107.3
Q ss_pred HHH--HHHHHHHHhc-----CChHHHHHHHHHHHhCCCCCCCcCCC-HHHHHHHHHHHh---------hcCcHHHHHHHH
Q 038200 286 VCW--NAMILGHCIH-----GKPEEGIKLFTALVNGTVAGGSISPD-EITFIGVICACV---------RAELLTEGRKYF 348 (523)
Q Consensus 286 ~~~--~~li~~~~~~-----g~~~~a~~~~~~m~~~~~~~~~~~p~-~~~~~~ll~~~~---------~~~~~~~a~~~~ 348 (523)
..| ..++.+.... ...+.|+.+|.+..... ...|+ ...|..+..++. ...+..+|.+.-
T Consensus 252 ~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~----~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A 327 (458)
T PRK11906 252 NHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKS----DIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELL 327 (458)
T ss_pred cchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcc----cCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHH
Confidence 455 5555554431 24567888899988322 05565 334444433322 134566778888
Q ss_pred HHhhHhcCCCCChHHHHHHHHHHHcCCChHHHHHHHHhCCCCCCCCCch-HHHHHHHHHHHHhcCCHHHHHHHHHHHhhc
Q 038200 349 RQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFE-SIMWVSLLSLCRFQGAVAMVERLAKSFVDM 427 (523)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 427 (523)
++..+ --+.|+.....+..++.-.++++.|...|++... +.|+ +.+|......+.-.|+.++|.+.++++.++
T Consensus 328 ~rAve--ld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~----L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrL 401 (458)
T PRK11906 328 DYVSD--ITTVDGKILAIMGLITGLSGQAKVSHILFEQAKI----HSTDIASLYYYRALVHFHNEKIEEARICIDKSLQL 401 (458)
T ss_pred HHHHh--cCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhh----cCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc
Confidence 88887 3455778888888888888899999999999986 4665 556666666678899999999999999999
Q ss_pred CCCC--hhhHHHHHHHHHhcCChhHHHHHHH
Q 038200 428 DPQD--FSRYQFLLNVYAVAGQWEDVARVRE 456 (523)
Q Consensus 428 ~p~~--~~~~~~l~~~~~~~g~~~~A~~~~~ 456 (523)
+|.- ..+....+..|+.. ..++|++++-
T Consensus 402 sP~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 431 (458)
T PRK11906 402 EPRRRKAVVIKECVDMYVPN-PLKNNIKLYY 431 (458)
T ss_pred CchhhHHHHHHHHHHHHcCC-chhhhHHHHh
Confidence 9963 33344444466654 4566666654
No 253
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=95.36 E-value=0.91 Score=44.06 Aligned_cols=159 Identities=9% Similarity=0.003 Sum_probs=104.2
Q ss_pred HHccCCchHHHHHHHHHHHhCCCCCchHHHHHHHHHHccCChHHHHHHHhhcCCCCcchHHHHHHHHHhcCCHHHHHHHH
Q 038200 97 CAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELF 176 (523)
Q Consensus 97 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~ 176 (523)
..-.++++.+.+..+.-.-. +.....-.+.++..+.+.|..+.|+++-..- ..-.....+.|+++.|.++-
T Consensus 271 av~~~d~~~v~~~i~~~~ll-~~i~~~~~~~i~~fL~~~G~~e~AL~~~~D~--------~~rFeLAl~lg~L~~A~~~a 341 (443)
T PF04053_consen 271 AVLRGDFEEVLRMIAASNLL-PNIPKDQGQSIARFLEKKGYPELALQFVTDP--------DHRFELALQLGNLDIALEIA 341 (443)
T ss_dssp HHHTT-HHH-----HHHHTG-GG--HHHHHHHHHHHHHTT-HHHHHHHSS-H--------HHHHHHHHHCT-HHHHHHHC
T ss_pred HHHcCChhhhhhhhhhhhhc-ccCChhHHHHHHHHHHHCCCHHHHHhhcCCh--------HHHhHHHHhcCCHHHHHHHH
Confidence 34457788876665411111 1223556888999999999999998875542 23445566889999999998
Q ss_pred hcCCCCChhHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHcCCCCchHH
Q 038200 177 DIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIIL 256 (523)
Q Consensus 177 ~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 256 (523)
++.. +...|..|.....+.|+++-|.+.|.+..+ |..|+-.|...|+.+...++.+.....|-
T Consensus 342 ~~~~--~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~~------ 404 (443)
T PF04053_consen 342 KELD--DPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEERGD------ 404 (443)
T ss_dssp CCCS--THHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-------
T ss_pred HhcC--cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHccC------
Confidence 8876 567999999999999999999999987543 45566667778888887777777766652
Q ss_pred HHHHhhhhhhcCChHHHHHHHHhcC
Q 038200 257 DTALIDLYSKCQKVEVAQRVFDSMA 281 (523)
Q Consensus 257 ~~~l~~~~~~~~~~~~a~~~~~~~~ 281 (523)
++....++.-.|+.+++.+++.+..
T Consensus 405 ~n~af~~~~~lgd~~~cv~lL~~~~ 429 (443)
T PF04053_consen 405 INIAFQAALLLGDVEECVDLLIETG 429 (443)
T ss_dssp HHHHHHHHHHHT-HHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHcC
Confidence 3444555566688888887776544
No 254
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=95.32 E-value=0.18 Score=44.04 Aligned_cols=110 Identities=11% Similarity=0.163 Sum_probs=78.1
Q ss_pred HHHHHhcCC--CCChhHHHHHHHHHHh-----cCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc------------
Q 038200 172 AHELFDIMP--ERNVVSWNIMISGYSK-----SGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRS------------ 232 (523)
Q Consensus 172 a~~~~~~~~--~~~~~~~~~li~~~~~-----~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~------------ 232 (523)
.+..|.... ++|-.+|-+.+..+.. .+..+-....++.|.+-|+.-|..+|..|++.+-+.
T Consensus 53 ~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F 132 (406)
T KOG3941|consen 53 VEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVF 132 (406)
T ss_pred hhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHH
Confidence 344555555 4666677766666543 355666667778888888888888998888876443
Q ss_pred ----ccHHHHHHHHHHHHHcCCCCchHHHHHHhhhhhhcCCh-HHHHHHHHhcC
Q 038200 233 ----ARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKV-EVAQRVFDSMA 281 (523)
Q Consensus 233 ----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~ 281 (523)
.+-+-+..++++|...|+.||..+-..|++++.+.+-. .+..++.--|.
T Consensus 133 ~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWmP 186 (406)
T KOG3941|consen 133 LHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWMP 186 (406)
T ss_pred hhCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccccHHHHHHHHHhhh
Confidence 23455788999999999999999999999999887753 34444444443
No 255
>PRK15331 chaperone protein SicA; Provisional
Probab=95.31 E-value=0.57 Score=37.85 Aligned_cols=89 Identities=10% Similarity=0.120 Sum_probs=55.8
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCCCCcCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhHhcCCCCChHHHHHHHHHHH
Q 038200 293 LGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYA 372 (523)
Q Consensus 293 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 372 (523)
--+...|++++|..+|+-+...+ .-+..-+..|..++-..+++++|...|...... . .-|+..+-....+|.
T Consensus 45 y~~y~~Gk~~eA~~~F~~L~~~d------~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l-~-~~dp~p~f~agqC~l 116 (165)
T PRK15331 45 YEFYNQGRLDEAETFFRFLCIYD------FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTL-L-KNDYRPVFFTGQCQL 116 (165)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC------cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-c-cCCCCccchHHHHHH
Confidence 33456777777777777776643 223333445555555667777777777766553 2 234444555677777
Q ss_pred cCCChHHHHHHHHhCCC
Q 038200 373 GAELTEEAEEILRKMPE 389 (523)
Q Consensus 373 ~~g~~~~A~~~~~~~~~ 389 (523)
..|+.+.|...|....+
T Consensus 117 ~l~~~~~A~~~f~~a~~ 133 (165)
T PRK15331 117 LMRKAAKARQCFELVNE 133 (165)
T ss_pred HhCCHHHHHHHHHHHHh
Confidence 77777777777777773
No 256
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=95.27 E-value=0.21 Score=46.19 Aligned_cols=94 Identities=12% Similarity=0.018 Sum_probs=52.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhHhcCCCCChHHHHH
Q 038200 287 CWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWC 366 (523)
Q Consensus 287 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 366 (523)
+++.+..+|.+.+++.+|++.-++.+... ++|....-.=..+|...|+++.|+..|+++.+. -+-|...-.-
T Consensus 259 ~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~------~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~--~P~Nka~~~e 330 (397)
T KOG0543|consen 259 CHLNLAACYLKLKEYKEAIESCNKVLELD------PNNVKALYRRGQALLALGEYDLARDDFQKALKL--EPSNKAARAE 330 (397)
T ss_pred HhhHHHHHHHhhhhHHHHHHHHHHHHhcC------CCchhHHHHHHHHHHhhccHHHHHHHHHHHHHh--CCCcHHHHHH
Confidence 45556666667777777777666666653 445555555666666667777777777776652 2223333334
Q ss_pred HHHHHHcCCChH-HHHHHHHhCC
Q 038200 367 MANLYAGAELTE-EAEEILRKMP 388 (523)
Q Consensus 367 l~~~~~~~g~~~-~A~~~~~~~~ 388 (523)
|+.+-.+..... ...++|..|.
T Consensus 331 l~~l~~k~~~~~~kekk~y~~mF 353 (397)
T KOG0543|consen 331 LIKLKQKIREYEEKEKKMYANMF 353 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 444333333332 2345555554
No 257
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=95.27 E-value=0.9 Score=37.11 Aligned_cols=131 Identities=11% Similarity=0.073 Sum_probs=64.8
Q ss_pred HHHHHHHHCCCCCCcccHHHHHHHHHccCCchHHHHHHHHHHHhCCCCCchHHHHHHHHHHccC--ChHHHHHHHhhcCC
Q 038200 73 VFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFG--AMDCARNMFVQMSP 150 (523)
Q Consensus 73 ~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~ 150 (523)
+.++.+.+.+++|+...+..++..+.+.|++.... .+++.++-+|.......+-.+.... -...|..++.++.
T Consensus 15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~----qllq~~Vi~DSk~lA~~LLs~~~~~~~~~Ql~lDMLkRL~- 89 (167)
T PF07035_consen 15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLH----QLLQYHVIPDSKPLACQLLSLGNQYPPAYQLGLDMLKRLG- 89 (167)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHH----HHHhhcccCCcHHHHHHHHHhHccChHHHHHHHHHHHHhh-
Confidence 34455556777777778888888888777755433 3345555555554444332222211 1222333333332
Q ss_pred CCcchHHHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHhcCCchHHHHHHHHHH
Q 038200 151 RDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMM 211 (523)
Q Consensus 151 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 211 (523)
..+..++..+...|++-+|.++.+....-+......++.+..+.++...-..+|+-..
T Consensus 90 ---~~~~~iievLL~~g~vl~ALr~ar~~~~~~~~~~~~fLeAA~~~~D~~lf~~V~~ff~ 147 (167)
T PF07035_consen 90 ---TAYEEIIEVLLSKGQVLEALRYARQYHKVDSVPARKFLEAAANSNDDQLFYAVFRFFE 147 (167)
T ss_pred ---hhHHHHHHHHHhCCCHHHHHHHHHHcCCcccCCHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 2344445555555666666655555433332333334444444444444444444333
No 258
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=95.23 E-value=0.11 Score=42.86 Aligned_cols=88 Identities=10% Similarity=0.021 Sum_probs=50.7
Q ss_pred HHcCCChHHHHHHHHhCCCCCCCCCch-----HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhhHHHHHHHHHhc
Q 038200 371 YAGAELTEEAEEILRKMPEDNDNMSFE-----SIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVA 445 (523)
Q Consensus 371 ~~~~g~~~~A~~~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 445 (523)
+...|++++|..-|.+.++. .++. .+.|..-..++.+.+.++.|..-..++++++|....++..-+.+|.+.
T Consensus 105 ~F~ngdyeeA~skY~~Ale~---cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ 181 (271)
T KOG4234|consen 105 LFKNGDYEEANSKYQEALES---CPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKM 181 (271)
T ss_pred hhhcccHHHHHHHHHHHHHh---CccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhh
Confidence 44556666666666655542 1111 233333344555666666666666666666665555555556666666
Q ss_pred CChhHHHHHHHHHHhC
Q 038200 446 GQWEDVARVRELMKKR 461 (523)
Q Consensus 446 g~~~~A~~~~~~m~~~ 461 (523)
.++++|+.=|+++.+.
T Consensus 182 ek~eealeDyKki~E~ 197 (271)
T KOG4234|consen 182 EKYEEALEDYKKILES 197 (271)
T ss_pred hhHHHHHHHHHHHHHh
Confidence 6666666666666543
No 259
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=95.11 E-value=1.6 Score=41.84 Aligned_cols=106 Identities=13% Similarity=0.112 Sum_probs=69.4
Q ss_pred HHHHHHHHHHHhhcCcHHHHHHHHHHhhHhcCCCCChHHHHHHHHHHHcCCChHHHHHHHHhCCCCCCCCC-chHHHHHH
Q 038200 325 EITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMS-FESIMWVS 403 (523)
Q Consensus 325 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~~~ 403 (523)
..+=..+..++-+.|+.++|.+.++++.+.+....+......|+.++...+.+.++..++.+--+. ..+ .-...|+.
T Consensus 259 ~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi--~lpkSAti~YTa 336 (539)
T PF04184_consen 259 VYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDI--SLPKSATICYTA 336 (539)
T ss_pred hhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccc--cCCchHHHHHHH
Confidence 334445667777889999999999999875332234567778899999999999999998886531 112 22445555
Q ss_pred HHHHHHhcCC---------------HHHHHHHHHHHhhcCCCCh
Q 038200 404 LLSLCRFQGA---------------VAMVERLAKSFVDMDPQDF 432 (523)
Q Consensus 404 l~~~~~~~g~---------------~~~a~~~~~~~~~~~p~~~ 432 (523)
.+-.++..++ ...|.+.+.++.+.+|.-|
T Consensus 337 ALLkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp 380 (539)
T PF04184_consen 337 ALLKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVP 380 (539)
T ss_pred HHHHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCc
Confidence 5544444443 1345577777877777543
No 260
>PRK09687 putative lyase; Provisional
Probab=95.05 E-value=2.6 Score=38.25 Aligned_cols=136 Identities=12% Similarity=-0.034 Sum_probs=58.5
Q ss_pred CChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcCCCHHHHHHHHHHHhhcC-cHHHHHHHHHHhhHhcCCCCCh
Q 038200 283 RNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAE-LLTEGRKYFRQMIDFYKIKPNF 361 (523)
Q Consensus 283 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~ 361 (523)
++..+-...+.++.+.++ ..+...+-.+... ++...-...+.++.+.+ ....+...+..+.. .++.
T Consensus 140 ~~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~d--------~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~----D~~~ 206 (280)
T PRK09687 140 KSTNVRFAVAFALSVIND-EAAIPLLINLLKD--------PNGDVRNWAAFALNSNKYDNPDIREAFVAMLQ----DKNE 206 (280)
T ss_pred CCHHHHHHHHHHHhccCC-HHHHHHHHHHhcC--------CCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhc----CCCh
Confidence 344444444555555444 3344444444432 22233333333333322 12234444444433 2344
Q ss_pred HHHHHHHHHHHcCCChHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhhHHHHHHH
Q 038200 362 AHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNV 441 (523)
Q Consensus 362 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 441 (523)
.+....+.++.+.|+ ..|...+-+..+. ++ .....+.++...|+. +|...+..+.+..| |..+-..-..+
T Consensus 207 ~VR~~A~~aLg~~~~-~~av~~Li~~L~~-----~~--~~~~a~~ALg~ig~~-~a~p~L~~l~~~~~-d~~v~~~a~~a 276 (280)
T PRK09687 207 EIRIEAIIGLALRKD-KRVLSVLIKELKK-----GT--VGDLIIEAAGELGDK-TLLPVLDTLLYKFD-DNEIITKAIDK 276 (280)
T ss_pred HHHHHHHHHHHccCC-hhHHHHHHHHHcC-----Cc--hHHHHHHHHHhcCCH-hHHHHHHHHHhhCC-ChhHHHHHHHH
Confidence 555555556666555 3344444443421 11 122344455555553 45666666555555 33333333333
No 261
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=95.04 E-value=3.2 Score=39.27 Aligned_cols=153 Identities=9% Similarity=0.020 Sum_probs=79.9
Q ss_pred ChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhHhcCCCCC--h
Q 038200 284 NLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPN--F 361 (523)
Q Consensus 284 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~ 361 (523)
...+|..++..+.+.|+++.|...+.++...+...... .+.....-+..+-..|+..+|...++...+. .+..+ .
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~--~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~-~~~~~~~~ 221 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESL--LPRVFLEYAKLLWAQGEQEEAIQKLRELLKC-RLSKNIDS 221 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCC--CcchHHHHHHHHHHcCCHHHHHHHHHHHHHH-Hhhhcccc
Confidence 44567778888888888888888888877643110001 2333344455566678888888888777662 11111 1
Q ss_pred HHHHHHHHHHHcCCChHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHhc------CCHHHHHHHHHHHhhcCCCChhhH
Q 038200 362 AHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQ------GAVAMVERLAKSFVDMDPQDFSRY 435 (523)
Q Consensus 362 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~------g~~~~a~~~~~~~~~~~p~~~~~~ 435 (523)
.....+...+.. .......-.........-...+..+..-+... ++.+.+...|+.+.++.|.....|
T Consensus 222 ~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~ 295 (352)
T PF02259_consen 222 ISNAELKSGLLE------SLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAW 295 (352)
T ss_pred ccHHHHhhcccc------ccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHH
Confidence 111111111100 00000000000000011122333333333344 778888999999999998877777
Q ss_pred HHHHHHHHhc
Q 038200 436 QFLLNVYAVA 445 (523)
Q Consensus 436 ~~l~~~~~~~ 445 (523)
..++..+.+.
T Consensus 296 ~~~a~~~~~~ 305 (352)
T PF02259_consen 296 HSWALFNDKL 305 (352)
T ss_pred HHHHHHHHHH
Confidence 7777766543
No 262
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=94.98 E-value=1.5 Score=35.02 Aligned_cols=42 Identities=19% Similarity=0.074 Sum_probs=19.6
Q ss_pred HHHHHHHccCCchHHHHHHHHHHHhCCCCCchHHHHHHHHHHc
Q 038200 92 SLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGC 134 (523)
Q Consensus 92 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 134 (523)
.++..+...+.......+++.+...+. .+...++.++..|++
T Consensus 12 ~vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~ 53 (140)
T smart00299 12 EVVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAK 53 (140)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHH
Confidence 344444444444555555555444432 344455555555544
No 263
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=94.97 E-value=2.2 Score=37.06 Aligned_cols=222 Identities=14% Similarity=0.053 Sum_probs=143.3
Q ss_pred CCchHHHHHHHHHHHCCCC-CCHHHHHHHHHHHhccccHHHHHHHHHHHHHc-CCCCchHHHHHHhhhhhhcCChHHHHH
Q 038200 198 GNPGCSLKLFREMMKSGFR-GNDKTMASVLTACGRSARFNEGRSVHGYTVRT-SLKPNIILDTALIDLYSKCQKVEVAQR 275 (523)
Q Consensus 198 ~~~~~a~~~~~~m~~~~~~-p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~ 275 (523)
+....+...+......... .....+......+...+++..+...+...... ........+......+...+++..+..
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (291)
T COG0457 37 GELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALE 116 (291)
T ss_pred hhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHH
Confidence 3444444444444443211 12455556666666677777776666665542 223345555566666666677777777
Q ss_pred HHHhcCC--CCh-HHHHHHHH-HHHhcCChHHHHHHHHHHHhCCCCCCCc--CCCHHHHHHHHHHHhhcCcHHHHHHHHH
Q 038200 276 VFDSMAD--RNL-VCWNAMIL-GHCIHGKPEEGIKLFTALVNGTVAGGSI--SPDEITFIGVICACVRAELLTEGRKYFR 349 (523)
Q Consensus 276 ~~~~~~~--~~~-~~~~~li~-~~~~~g~~~~a~~~~~~m~~~~~~~~~~--~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 349 (523)
.+..... ++. ........ .+...|+++.|...+.+..... . ......+......+...++.+.+...+.
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 191 (291)
T COG0457 117 LLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALELD-----PELNELAEALLALGALLEALGRYEEALELLE 191 (291)
T ss_pred HHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-----CCccchHHHHHHhhhHHHHhcCHHHHHHHHH
Confidence 7776654 221 22333333 6888899999999999886622 1 1123344444445677889999999999
Q ss_pred HhhHhcCCCC-ChHHHHHHHHHHHcCCChHHHHHHHHhCCCCCCCCCch-HHHHHHHHHHHHhcCCHHHHHHHHHHHhhc
Q 038200 350 QMIDFYKIKP-NFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFE-SIMWVSLLSLCRFQGAVAMVERLAKSFVDM 427 (523)
Q Consensus 350 ~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 427 (523)
..... ... ....+..+...+...++++.|...+...... .|+ ...+..+...+...+..+.+...+.+....
T Consensus 192 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (291)
T COG0457 192 KALKL--NPDDDAEALLNLGLLYLKLGKYEEALEYYEKALEL----DPDNAEALYNLALLLLELGRYEEALEALEKALEL 265 (291)
T ss_pred HHHhh--CcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhh----CcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 98873 444 4677888888899999999999999988853 343 344444555555777899999999999988
Q ss_pred CCC
Q 038200 428 DPQ 430 (523)
Q Consensus 428 ~p~ 430 (523)
.|.
T Consensus 266 ~~~ 268 (291)
T COG0457 266 DPD 268 (291)
T ss_pred Ccc
Confidence 885
No 264
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=94.96 E-value=0.084 Score=29.78 Aligned_cols=31 Identities=16% Similarity=0.223 Sum_probs=19.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhcCCC
Q 038200 400 MWVSLLSLCRFQGAVAMVERLAKSFVDMDPQ 430 (523)
Q Consensus 400 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 430 (523)
.+..+...+...|++++|.+.++++++++|+
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~ 33 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALELDPN 33 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCcC
Confidence 3445555666666777777777766666664
No 265
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=94.94 E-value=1.5 Score=34.96 Aligned_cols=128 Identities=11% Similarity=0.083 Sum_probs=71.3
Q ss_pred ccHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCcccHHHHHHHHHccCCchHHHHHHHHHHHhCCCCCchHHHHHHHHH
Q 038200 53 FCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMY 132 (523)
Q Consensus 53 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 132 (523)
..-..++..+...+.+......++.+...+ ..+...++.++..+++.. .....+.++. ..+......+++.|
T Consensus 8 ~~~~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~------~~~~yd~~~~~~~c 79 (140)
T smart00299 8 IDVSEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYD-PQKEIERLDN------KSNHYDIEKVGKLC 79 (140)
T ss_pred CCHHHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC-HHHHHHHHHh------ccccCCHHHHHHHH
Confidence 344567777777777888888888877765 356667777777777653 2333333331 12334444566666
Q ss_pred HccCChHHHHHHHhhcCCCCcchHHHHHHHHHhc-CCHHHHHHHHhcCCCCChhHHHHHHHHHH
Q 038200 133 GCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRS-GDMSAAHELFDIMPERNVVSWNIMISGYS 195 (523)
Q Consensus 133 ~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~li~~~~ 195 (523)
.+.+.++++.-++.++.. |...+..+... ++++.|.+.+.+-. +...|..++..+.
T Consensus 80 ~~~~l~~~~~~l~~k~~~-----~~~Al~~~l~~~~d~~~a~~~~~~~~--~~~lw~~~~~~~l 136 (140)
T smart00299 80 EKAKLYEEAVELYKKDGN-----FKDAIVTLIEHLGNYEKAIEYFVKQN--NPELWAEVLKALL 136 (140)
T ss_pred HHcCcHHHHHHHHHhhcC-----HHHHHHHHHHcccCHHHHHHHHHhCC--CHHHHHHHHHHHH
Confidence 666666666666655522 22222223333 55666666555522 3445555555443
No 266
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=94.88 E-value=0.067 Score=30.28 Aligned_cols=31 Identities=13% Similarity=0.140 Sum_probs=19.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhcCCC
Q 038200 400 MWVSLLSLCRFQGAVAMVERLAKSFVDMDPQ 430 (523)
Q Consensus 400 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 430 (523)
+|..+...+...|++++|...++++++++|+
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 4555666666667777777777777666664
No 267
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=94.80 E-value=2.8 Score=37.40 Aligned_cols=167 Identities=10% Similarity=0.017 Sum_probs=92.8
Q ss_pred HHHHHHhcCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhh
Q 038200 273 AQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMI 352 (523)
Q Consensus 273 a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 352 (523)
..+.+++...+....--.-.......|++.+|..+|....... +-+...-..+..+|...|+.+.|..++..+-
T Consensus 122 lr~~ld~~~~~~~e~~~~~~~~~~~~e~~~~a~~~~~~al~~~------~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP 195 (304)
T COG3118 122 LRQFLDKVLPAEEEEALAEAKELIEAEDFGEAAPLLKQALQAA------PENSEAKLLLAECLLAAGDVEAAQAILAALP 195 (304)
T ss_pred HHHHHHHhcChHHHHHHHHhhhhhhccchhhHHHHHHHHHHhC------cccchHHHHHHHHHHHcCChHHHHHHHHhCc
Confidence 3444444444322222223334556777777777777777643 2234455566677777788888877777765
Q ss_pred HhcCCCCChHHHHHHHHHHHcCCChHHHHHHHHhCCCCCCCCCc-hHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcC--C
Q 038200 353 DFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSF-ESIMWVSLLSLCRFQGAVAMVERLAKSFVDMD--P 429 (523)
Q Consensus 353 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--p 429 (523)
.. --.........-+..+.+.....+...+-++... .| |...-..+...+...|+.+.|.+.+-.++..+ -
T Consensus 196 ~~-~~~~~~~~l~a~i~ll~qaa~~~~~~~l~~~~aa-----dPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~ 269 (304)
T COG3118 196 LQ-AQDKAAHGLQAQIELLEQAAATPEIQDLQRRLAA-----DPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGF 269 (304)
T ss_pred cc-chhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHh-----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccc
Confidence 42 1111111112233444454455544555555442 33 44555556666777777777777766666543 3
Q ss_pred CChhhHHHHHHHHHhcCChhHH
Q 038200 430 QDFSRYQFLLNVYAVAGQWEDV 451 (523)
Q Consensus 430 ~~~~~~~~l~~~~~~~g~~~~A 451 (523)
.+...-..|+..+.-.|.-+.+
T Consensus 270 ~d~~~Rk~lle~f~~~g~~Dp~ 291 (304)
T COG3118 270 EDGEARKTLLELFEAFGPADPL 291 (304)
T ss_pred cCcHHHHHHHHHHHhcCCCCHH
Confidence 3566677777777777654443
No 268
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=94.74 E-value=0.47 Score=36.31 Aligned_cols=94 Identities=18% Similarity=0.039 Sum_probs=55.0
Q ss_pred HHhhcCcHHHHHHHHHHhhHhcCCCCChHHHHHHHHHHHcCCChHHHHHHHHhCCCCCCCCCc-hHHHHHHHHHHHHhcC
Q 038200 334 ACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSF-ESIMWVSLLSLCRFQG 412 (523)
Q Consensus 334 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g 412 (523)
+++..|+.+.|++.|.+... -.+-....|+.-..++.-.|+.++|++-+++.++...+-.. .-..|..-...|+..|
T Consensus 52 alaE~g~Ld~AlE~F~qal~--l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g 129 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALC--LAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLG 129 (175)
T ss_pred HHHhccchHHHHHHHHHHHH--hcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhC
Confidence 34566677777777776665 33445666777777777777777777776666543221111 1122333333466677
Q ss_pred CHHHHHHHHHHHhhcCC
Q 038200 413 AVAMVERLAKSFVDMDP 429 (523)
Q Consensus 413 ~~~~a~~~~~~~~~~~p 429 (523)
+.+.|..-|+.+-+++.
T Consensus 130 ~dd~AR~DFe~AA~LGS 146 (175)
T KOG4555|consen 130 NDDAARADFEAAAQLGS 146 (175)
T ss_pred chHHHHHhHHHHHHhCC
Confidence 77777777776665543
No 269
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=94.56 E-value=1.6 Score=33.60 Aligned_cols=61 Identities=10% Similarity=0.082 Sum_probs=32.0
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhHh
Q 038200 288 WNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDF 354 (523)
Q Consensus 288 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 354 (523)
....+..+..+|+-+.-.+++.++.+.+ .+++.....+..+|.+.|+..++.+++.++-+.
T Consensus 89 vD~ALd~lv~~~kkDqLdki~~~l~kn~------~~~p~~L~kia~Ay~klg~~r~~~ell~~ACek 149 (161)
T PF09205_consen 89 VDLALDILVKQGKKDQLDKIYNELKKNE------EINPEFLVKIANAYKKLGNTREANELLKEACEK 149 (161)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHH-----------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHhhcc------CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence 3444555566666666666666655432 455556666666666666666666666666554
No 270
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.48 E-value=6.7 Score=40.30 Aligned_cols=142 Identities=13% Similarity=0.023 Sum_probs=95.1
Q ss_pred HHhhccCCchhHHHHhccC-CCCCcccHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCcccHHHHHHHHHccCCchHHH
Q 038200 29 KHSADFGSPDYTVLVFKCI-NNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGG 107 (523)
Q Consensus 29 ~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~ 107 (523)
+.+-+.|++++|...+-+- ..-+. ..++.-|........-...++.+.+.|+. +...-..|+.+|.+.++.++-.
T Consensus 376 d~Ly~Kgdf~~A~~qYI~tI~~le~---s~Vi~kfLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~ 451 (933)
T KOG2114|consen 376 DYLYGKGDFDEATDQYIETIGFLEP---SEVIKKFLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLT 451 (933)
T ss_pred HHHHhcCCHHHHHHHHHHHcccCCh---HHHHHHhcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHH
Confidence 4455789999999877543 31111 23677777777888888889999998854 4555678999999999988877
Q ss_pred HHHHHHHHhCCCCCchHHHHHHHHHHccCChHHHHHHHhhcCCCCcchHHHHHHHHHhcCCHHHHHHHHhcCCC
Q 038200 108 MCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPE 181 (523)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 181 (523)
++.+..- .|.- ..-....+..+.+.+-.++|.-+-.+... +......++ -..+++++|.+.+..++-
T Consensus 452 efI~~~~-~g~~--~fd~e~al~Ilr~snyl~~a~~LA~k~~~-he~vl~ill---e~~~ny~eAl~yi~slp~ 518 (933)
T KOG2114|consen 452 EFISKCD-KGEW--FFDVETALEILRKSNYLDEAELLATKFKK-HEWVLDILL---EDLHNYEEALRYISSLPI 518 (933)
T ss_pred HHHhcCC-Ccce--eeeHHHHHHHHHHhChHHHHHHHHHHhcc-CHHHHHHHH---HHhcCHHHHHHHHhcCCH
Confidence 7665443 2211 12245566777777777777666555443 333333333 356889999999999974
No 271
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=94.44 E-value=0.74 Score=45.33 Aligned_cols=132 Identities=16% Similarity=0.151 Sum_probs=96.6
Q ss_pred HHHHHHHHHhhcCcHHHHHHHHHHhhHhcCCCCCh-----HHHHHHHHHHHc----CCChHHHHHHHHhCCCCCCCCCch
Q 038200 327 TFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNF-----AHYWCMANLYAG----AELTEEAEEILRKMPEDNDNMSFE 397 (523)
Q Consensus 327 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-----~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~ 397 (523)
.+..++....-.|+-+.+++.+....+..++.-.. -.|...+..++. ....+.|.++++.+... -|+
T Consensus 190 ~~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~----yP~ 265 (468)
T PF10300_consen 190 KVLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR----YPN 265 (468)
T ss_pred HHHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh----CCC
Confidence 45567777778899999999999887743343222 223333433332 45778999999999963 677
Q ss_pred HHHHHHHHH-HHHhcCCHHHHHHHHHHHhhcCC----CChhhHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 038200 398 SIMWVSLLS-LCRFQGAVAMVERLAKSFVDMDP----QDFSRYQFLLNVYAVAGQWEDVARVRELMKKRR 462 (523)
Q Consensus 398 ~~~~~~l~~-~~~~~g~~~~a~~~~~~~~~~~p----~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 462 (523)
...|...-. .+...|+.++|.+.++.+..... -..-.+..++..+.-.++|++|...|.++.+.+
T Consensus 266 s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s 335 (468)
T PF10300_consen 266 SALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES 335 (468)
T ss_pred cHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc
Confidence 766655544 57889999999999998775222 134478889999999999999999999997753
No 272
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=94.37 E-value=4.1 Score=37.41 Aligned_cols=168 Identities=10% Similarity=0.062 Sum_probs=97.6
Q ss_pred hHHHHHHHHHHhcCCchHHHHHHHHHHHC-CCCC---CHHHHHHHHHHHhccccHHHHHHHHHHHHHcCC---C--CchH
Q 038200 185 VSWNIMISGYSKSGNPGCSLKLFREMMKS-GFRG---NDKTMASVLTACGRSARFNEGRSVHGYTVRTSL---K--PNII 255 (523)
Q Consensus 185 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~-~~~p---~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~---~--~~~~ 255 (523)
.+|..+..++-+..++.+++.+-..-... |..| ......++..++...+.++++.+.|+...+... . ....
T Consensus 84 ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElq 163 (518)
T KOG1941|consen 84 EAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQ 163 (518)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeee
Confidence 44556666666666666666665544332 2222 113344566777778888888888887765421 1 2346
Q ss_pred HHHHHhhhhhhcCChHHHHHHHHhcCC-------CChH-HH-----HHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcC
Q 038200 256 LDTALIDLYSKCQKVEVAQRVFDSMAD-------RNLV-CW-----NAMILGHCIHGKPEEGIKLFTALVNGTVAGGSIS 322 (523)
Q Consensus 256 ~~~~l~~~~~~~~~~~~a~~~~~~~~~-------~~~~-~~-----~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~ 322 (523)
++..|...|.+..++++|.-+..+..+ .|.. -| -.|.-++-..|...+|.+.-++..+.....++-.
T Consensus 164 vcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra 243 (518)
T KOG1941|consen 164 VCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRA 243 (518)
T ss_pred hhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChH
Confidence 788888888888888887765554422 2222 12 2234456667777777766666544321000111
Q ss_pred CCHHHHHHHHHHHhhcCcHHHHHHHHHHhh
Q 038200 323 PDEITFIGVICACVRAELLTEGRKYFRQMI 352 (523)
Q Consensus 323 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 352 (523)
........+.+.|...|+.+.|+.-|+...
T Consensus 244 ~~arc~~~~aDIyR~~gd~e~af~rYe~Am 273 (518)
T KOG1941|consen 244 LQARCLLCFADIYRSRGDLERAFRRYEQAM 273 (518)
T ss_pred HHHHHHHHHHHHHHhcccHhHHHHHHHHHH
Confidence 123345556667777888888777776654
No 273
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=94.35 E-value=4.9 Score=38.18 Aligned_cols=377 Identities=9% Similarity=0.031 Sum_probs=206.0
Q ss_pred HHHHHHHHhhccCCchhHHHHhccCCC-CCcccHHHHHHH--HHhCCCchHHHHHHHHHHHC--CCCC------------
Q 038200 23 WTINLLKHSADFGSPDYTVLVFKCINN-PGTFCVNAVIKA--YSNSCVPDQGVVFYLQMIKN--GFMP------------ 85 (523)
Q Consensus 23 ~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~ll~~--~~~~~~~~~a~~~~~~m~~~--~~~p------------ 85 (523)
..+.++++|-. .+++..........+ -....|-.+..+ +-+.+.+.+|++.+..-... +..|
T Consensus 48 l~grilnAffl-~nld~Me~~l~~l~~~~~~s~~l~LF~~L~~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~ 126 (549)
T PF07079_consen 48 LGGRILNAFFL-NNLDLMEKQLMELRQQFGKSAYLPLFKALVAYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFS 126 (549)
T ss_pred HhhHHHHHHHH-hhHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhh
Confidence 34456666653 456666555544432 113445555554 34778999999888765543 2222
Q ss_pred CcccHHHHHHHHHccCCchHHHHHHHHHHHhCCC----CCchHHHHHHHHHHccCChHHHHHHHhhcC----CCCcchHH
Q 038200 86 NSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVD----FELPVMNSLINMYGCFGAMDCARNMFVQMS----PRDLISWN 157 (523)
Q Consensus 86 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~~~~ 157 (523)
|-..=+..++++...|++.+++.+++++...=++ .+..+|+.++-+++++ .|-++. ..=...|.
T Consensus 127 df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~vlmlsrS--------YfLEl~e~~s~dl~pdyY 198 (549)
T PF07079_consen 127 DFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDRAVLMLSRS--------YFLELKESMSSDLYPDYY 198 (549)
T ss_pred HHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHhHH--------HHHHHHHhcccccChHHH
Confidence 1112245667778999999999999998775444 7899999988777653 222221 11112233
Q ss_pred HHHHHHHhc-CCHH--------HHHHHHhcCC--------------------------CCCh-hHHHHHHHHHHhcCCch
Q 038200 158 SIVSGHVRS-GDMS--------AAHELFDIMP--------------------------ERNV-VSWNIMISGYSKSGNPG 201 (523)
Q Consensus 158 ~ll~~~~~~-~~~~--------~a~~~~~~~~--------------------------~~~~-~~~~~li~~~~~~~~~~ 201 (523)
-++-.|.+. ...+ -..+++..+. .|+- -....|...+.+ +.+
T Consensus 199 emilfY~kki~~~d~~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~mq~l~~We~~yv~p~~~LVi~~L~~~f~~--~~e 276 (549)
T PF07079_consen 199 EMILFYLKKIHAFDQRPYEKFIPEEELFSTIMQHLFIVPKERLPPLMQILENWENFYVHPNYDLVIEPLKQQFMS--DPE 276 (549)
T ss_pred HHHHHHHHHHHHHhhchHHhhCcHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHhhccCCchhHHHHHHHHHHhc--ChH
Confidence 333333221 1111 1122222111 0211 111222223332 455
Q ss_pred HHHHHHHHHHHCCCCC----CHHHHHHHHHHHhccccHHHHHHHHHHHHHcCCCCchHHHHHHh-------hhhhh----
Q 038200 202 CSLKLFREMMKSGFRG----NDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALI-------DLYSK---- 266 (523)
Q Consensus 202 ~a~~~~~~m~~~~~~p----~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~-------~~~~~---- 266 (523)
++..+-+.+....+.+ =..+|..++....+.++...|.+.+.-+.-. .|+..+...++ +..+.
T Consensus 277 ~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~l--dp~~svs~Kllls~~~lq~Iv~~DD~~ 354 (549)
T PF07079_consen 277 QVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKIL--DPRISVSEKLLLSPKVLQDIVCEDDES 354 (549)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhc--CCcchhhhhhhcCHHHHHHHHhcchHH
Confidence 5555544443332211 1247788888888888888888888776653 34433332221 11111
Q ss_pred cCChHHHHHHHHhcCCCChH---HHHHHH---HHHHhcCC-hHHHHHHHHHHHhCCCCCCCcCCCH-HH----HHHHHHH
Q 038200 267 CQKVEVAQRVFDSMADRNLV---CWNAMI---LGHCIHGK-PEEGIKLFTALVNGTVAGGSISPDE-IT----FIGVICA 334 (523)
Q Consensus 267 ~~~~~~a~~~~~~~~~~~~~---~~~~li---~~~~~~g~-~~~a~~~~~~m~~~~~~~~~~~p~~-~~----~~~ll~~ 334 (523)
.-+..+=+.+++.+...|+. ....|+ .-+.+.|. -++|+.+++..... .|.. .. +..+=.+
T Consensus 355 ~Tklr~yL~lwe~~qs~DiDrqQLvh~L~~~Ak~lW~~g~~dekalnLLk~il~f-------t~yD~ec~n~v~~fvKq~ 427 (549)
T PF07079_consen 355 YTKLRDYLNLWEEIQSYDIDRQQLVHYLVFGAKHLWEIGQCDEKALNLLKLILQF-------TNYDIECENIVFLFVKQA 427 (549)
T ss_pred HHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHh-------ccccHHHHHHHHHHHHHH
Confidence 11223334444544443321 112222 33556666 88999999998883 4433 22 2222233
Q ss_pred Hhh---cCcHHHHHHHHHHhhHhcCCCCC----hHHHHHHHHH--HHcCCChHHHHHHHHhCCCCCCCCCchHHHHHHHH
Q 038200 335 CVR---AELLTEGRKYFRQMIDFYKIKPN----FAHYWCMANL--YAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLL 405 (523)
Q Consensus 335 ~~~---~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~--~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~ 405 (523)
|.+ ...+.+-..+-+-+.+. |++|- ...-+.|.++ +...|++.++.-.-.-+.+ +.|++.++..+.
T Consensus 428 Y~qaLs~~~~~rLlkLe~fi~e~-gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~----iaPS~~~~RLlG 502 (549)
T PF07079_consen 428 YKQALSMHAIPRLLKLEDFITEV-GLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTK----IAPSPQAYRLLG 502 (549)
T ss_pred HHHHHhhhhHHHHHHHHHHHHhc-CCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH----hCCcHHHHHHHH
Confidence 332 23344444444445554 88773 4455556554 4578999998866555553 688888988888
Q ss_pred HHHHhcCCHHHHHHHHHHH
Q 038200 406 SLCRFQGAVAMVERLAKSF 424 (523)
Q Consensus 406 ~~~~~~g~~~~a~~~~~~~ 424 (523)
-......++++|..++..+
T Consensus 503 l~l~e~k~Y~eA~~~l~~L 521 (549)
T PF07079_consen 503 LCLMENKRYQEAWEYLQKL 521 (549)
T ss_pred HHHHHHhhHHHHHHHHHhC
Confidence 8888889999999988765
No 274
>PRK09687 putative lyase; Provisional
Probab=94.28 E-value=4.1 Score=37.01 Aligned_cols=233 Identities=10% Similarity=-0.045 Sum_probs=115.5
Q ss_pred CCCCCcccHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCcccHHHHHHHHHccCCc----hHHHHHHHHHHHhCCCCCc
Q 038200 47 INNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCV----ERGGMCHGLALKNGVDFEL 122 (523)
Q Consensus 47 ~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~----~~a~~~~~~~~~~~~~~~~ 122 (523)
+..+|.......+.++...|. ..+...+..+.. .+|...-...+.++.+.|+. .++...+..+... .++.
T Consensus 32 L~d~d~~vR~~A~~aL~~~~~-~~~~~~l~~ll~---~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~ 105 (280)
T PRK09687 32 LDDHNSLKRISSIRVLQLRGG-QDVFRLAIELCS---SKNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSA 105 (280)
T ss_pred HhCCCHHHHHHHHHHHHhcCc-chHHHHHHHHHh---CCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCH
Confidence 344555555556666665554 333333344433 23444444455555555543 3455555544332 3445
Q ss_pred hHHHHHHHHHHccCCh-----HHHHHHHhh-cCCCCcchHHHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHh
Q 038200 123 PVMNSLINMYGCFGAM-----DCARNMFVQ-MSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSK 196 (523)
Q Consensus 123 ~~~~~l~~~~~~~g~~-----~~A~~~~~~-~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~ 196 (523)
.+-...+.+++..+.. ..+...+.. +..++..+-...+.++++.++.+....+..-+..+|...-...+.++.+
T Consensus 106 ~VR~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~~~ai~~L~~~L~d~~~~VR~~A~~aLg~ 185 (280)
T PRK09687 106 CVRASAINATGHRCKKNPLYSPKIVEQSQITAFDKSTNVRFAVAFALSVINDEAAIPLLINLLKDPNGDVRNWAAFALNS 185 (280)
T ss_pred HHHHHHHHHHhcccccccccchHHHHHHHHHhhCCCHHHHHHHHHHHhccCCHHHHHHHHHHhcCCCHHHHHHHHHHHhc
Confidence 5555555555544321 223333322 2344555555666666666665444444444444555544444445544
Q ss_pred cC-CchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHcCCCCchHHHHHHhhhhhhcCChHHHHH
Q 038200 197 SG-NPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQR 275 (523)
Q Consensus 197 ~~-~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 275 (523)
.+ +...+...+..+.. .++...-...+.++.+.++. .+...+-...+.+ + .....+.++...|.. +|..
T Consensus 186 ~~~~~~~~~~~L~~~L~---D~~~~VR~~A~~aLg~~~~~-~av~~Li~~L~~~---~--~~~~a~~ALg~ig~~-~a~p 255 (280)
T PRK09687 186 NKYDNPDIREAFVAMLQ---DKNEEIRIEAIIGLALRKDK-RVLSVLIKELKKG---T--VGDLIIEAAGELGDK-TLLP 255 (280)
T ss_pred CCCCCHHHHHHHHHHhc---CCChHHHHHHHHHHHccCCh-hHHHHHHHHHcCC---c--hHHHHHHHHHhcCCH-hHHH
Confidence 32 23455555555553 34556666666777777664 3444444444432 1 233456666666664 4666
Q ss_pred HHHhcCC--CChHHHHHHHHHH
Q 038200 276 VFDSMAD--RNLVCWNAMILGH 295 (523)
Q Consensus 276 ~~~~~~~--~~~~~~~~li~~~ 295 (523)
.+..+.+ +|...-...+.++
T Consensus 256 ~L~~l~~~~~d~~v~~~a~~a~ 277 (280)
T PRK09687 256 VLDTLLYKFDDNEIITKAIDKL 277 (280)
T ss_pred HHHHHHhhCCChhHHHHHHHHH
Confidence 6666543 4444444444443
No 275
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=94.18 E-value=6.3 Score=38.85 Aligned_cols=354 Identities=10% Similarity=0.071 Sum_probs=184.0
Q ss_pred HHHHhccCC--CCCcccHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCcc-cHHHHHHHHHccCCchHHHHHHHHHHHh
Q 038200 40 TVLVFKCIN--NPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSY-TFVSLFGSCAKTGCVERGGMCHGLALKN 116 (523)
Q Consensus 40 A~~~~~~~~--~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 116 (523)
-.+.|+... .-+-..|+.+|.---...+.+.+..++..++.. .|... -|......=.+.|..+.+..+|++.+..
T Consensus 31 ~~~~we~~~~~~~~f~~wt~li~~~~~~~~~~~~r~~y~~fL~k--yPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~a 108 (577)
T KOG1258|consen 31 SLDYWEILSNDSLDFDAWTTLIQENDSIEDVDALREVYDIFLSK--YPLCYGYWKKFADYEYKLGNAENSVKVFERGVQA 108 (577)
T ss_pred hhhHhhccccchhcccchHHHHhccCchhHHHHHHHHHHHHHhh--CccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 344444433 234556777776655555667777788887754 45554 3444444446778899999999998764
Q ss_pred CCCCCchHHHHHHHHHH-ccCChHHHHHHHhhcCC------CCcchHHHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHH
Q 038200 117 GVDFELPVMNSLINMYG-CFGAMDCARNMFVQMSP------RDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNI 189 (523)
Q Consensus 117 ~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~------~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 189 (523)
++.+...|...+..+. ..|+.+.....|+.... .+...|...|..-..++++.....+++++.+--...|+.
T Consensus 109 -ip~SvdlW~~Y~~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRileiP~~~~~~ 187 (577)
T KOG1258|consen 109 -IPLSVDLWLSYLAFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEIPLHQLNR 187 (577)
T ss_pred -hhhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhhhhhHhHH
Confidence 6678888888776655 46788888888887763 255677778887788888888888888887644444444
Q ss_pred HHHHHHh---c------CCchHHHHHHHHHHHC-C---CCCCHHHHHHHHHHH-hccccHHHHHHHHHHHHHcCCCCchH
Q 038200 190 MISGYSK---S------GNPGCSLKLFREMMKS-G---FRGNDKTMASVLTAC-GRSARFNEGRSVHGYTVRTSLKPNII 255 (523)
Q Consensus 190 li~~~~~---~------~~~~~a~~~~~~m~~~-~---~~p~~~~~~~ll~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~ 255 (523)
...-|.+ . ...+++.++-...... . ..+.......-+.-. ...+..+.+.....+...
T Consensus 188 ~f~~f~~~l~~~~~~~l~~~d~~~~l~~~~~~~~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~-------- 259 (577)
T KOG1258|consen 188 HFDRFKQLLNQNEEKILLSIDELIQLRSDVAERSKITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIVS-------- 259 (577)
T ss_pred HHHHHHHHHhcCChhhhcCHHHHHHHhhhHHhhhhcccccChhHHHHHHHhhccCccchhhHHHHHHHHHHH--------
Confidence 4333322 1 1122222211111110 0 000000111111000 000111111111111100
Q ss_pred HHHHHhhhhhhcCChHHHHHHHHhcCC-----------CChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcCCC
Q 038200 256 LDTALIDLYSKCQKVEVAQRVFDSMAD-----------RNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPD 324 (523)
Q Consensus 256 ~~~~l~~~~~~~~~~~~a~~~~~~~~~-----------~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~p~ 324 (523)
.--.+|-...........|+.-.+ .+..+|...+.--...|+.+.+.-+|++..--- .-=
T Consensus 260 ---~~~~~~~~s~~~~~kr~~fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~c------A~Y 330 (577)
T KOG1258|consen 260 ---IHEKVYQKSEEEEEKRWGFEEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIPC------ALY 330 (577)
T ss_pred ---HHHHHHHhhHhHHHHHHhhhhhccccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHH------hhh
Confidence 000111122222333333333322 234577777777778888888888887765421 111
Q ss_pred HHHHHHHHHHHhhcCcHHHHHHHHHHhhHhcCCCCChHHHHHHHHHHH-cCCChHHHHHHHHhCCCCCCCCCchHHH-HH
Q 038200 325 EITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYA-GAELTEEAEEILRKMPEDNDNMSFESIM-WV 402 (523)
Q Consensus 325 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~~~~~~~~~~~-~~ 402 (523)
...|-..+.-....|+.+-|..++....+- ..|+......+-..+. ..|+++.|..+++.+.+. . |+... -.
T Consensus 331 ~efWiky~~~m~~~~~~~~~~~~~~~~~~i--~~k~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e---~-pg~v~~~l 404 (577)
T KOG1258|consen 331 DEFWIKYARWMESSGDVSLANNVLARACKI--HVKKTPIIHLLEARFEESNGNFDDAKVILQRIESE---Y-PGLVEVVL 404 (577)
T ss_pred HHHHHHHHHHHHHcCchhHHHHHHHhhhhh--cCCCCcHHHHHHHHHHHhhccHHHHHHHHHHHHhh---C-CchhhhHH
Confidence 223333444444447777777777766653 2233222222222333 356888888888887754 3 44222 12
Q ss_pred HHHHHHHhcCCHHHHHH
Q 038200 403 SLLSLCRFQGAVAMVER 419 (523)
Q Consensus 403 ~l~~~~~~~g~~~~a~~ 419 (523)
.-+....+.|+.+.+..
T Consensus 405 ~~~~~e~r~~~~~~~~~ 421 (577)
T KOG1258|consen 405 RKINWERRKGNLEDANY 421 (577)
T ss_pred HHHhHHHHhcchhhhhH
Confidence 22334566677666663
No 276
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=94.15 E-value=0.11 Score=29.97 Aligned_cols=26 Identities=19% Similarity=0.222 Sum_probs=21.6
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHH
Q 038200 434 RYQFLLNVYAVAGQWEDVARVRELMK 459 (523)
Q Consensus 434 ~~~~l~~~~~~~g~~~~A~~~~~~m~ 459 (523)
+|..|+.+|.+.|++++|++++++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 47789999999999999999999854
No 277
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=94.07 E-value=0.36 Score=43.05 Aligned_cols=61 Identities=23% Similarity=0.296 Sum_probs=45.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 038200 400 MWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKK 460 (523)
Q Consensus 400 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 460 (523)
++..++..+...|+.+.+...++...+.+|-+...|..++.+|.+.|+...|+..|+++.+
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~ 215 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKK 215 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 4455566666777777777777777777777777777777788888877777777777755
No 278
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=94.06 E-value=0.11 Score=41.71 Aligned_cols=84 Identities=8% Similarity=0.046 Sum_probs=42.9
Q ss_pred HHHHHHccCCchHHHHHHHHHHHhCCCCCchHHHHHHHHHHccCChHHHHHHHhhcCCCCcchHHHHHHHHHhcCCHHHH
Q 038200 93 LFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAA 172 (523)
Q Consensus 93 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a 172 (523)
++..+.+.+.+.....+++.+...+...+....+.++..|++.++.+...++++.... .....++..|.+.|.++.|
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~---yd~~~~~~~c~~~~l~~~a 89 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN---YDLDKALRLCEKHGLYEEA 89 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS---S-CTHHHHHHHTTTSHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc---cCHHHHHHHHHhcchHHHH
Confidence 4455555556666666666666555444556666666666666555666555553221 2233344444444444444
Q ss_pred HHHHhcC
Q 038200 173 HELFDIM 179 (523)
Q Consensus 173 ~~~~~~~ 179 (523)
.-++.++
T Consensus 90 ~~Ly~~~ 96 (143)
T PF00637_consen 90 VYLYSKL 96 (143)
T ss_dssp HHHHHCC
T ss_pred HHHHHHc
Confidence 4444444
No 279
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=93.98 E-value=4 Score=35.76 Aligned_cols=67 Identities=15% Similarity=0.047 Sum_probs=48.5
Q ss_pred HHHHHHHcCCChHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCh
Q 038200 366 CMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDF 432 (523)
Q Consensus 366 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~ 432 (523)
.+.+-|.+.|.+..|..-+++|.+.-....-....+-.+..+|...|-.++|...-+-+....|+++
T Consensus 172 ~IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N~p~s~ 238 (254)
T COG4105 172 AIARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGANYPDSQ 238 (254)
T ss_pred HHHHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCc
Confidence 3566788999999999999998865222222344556667788899999999888777766667654
No 280
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=93.98 E-value=2.8 Score=35.04 Aligned_cols=97 Identities=15% Similarity=0.152 Sum_probs=63.6
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcCCCH--HHHHHHHHHHhhcCcHHHHHHHHHHhhHhcCCCCCh--
Q 038200 286 VCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDE--ITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNF-- 361 (523)
Q Consensus 286 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~p~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-- 361 (523)
..+..+..-|++.|+.+.|++.|.++.+.. ..|.. ..+..+|..+...+++..+...+.++........|.
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~-----~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~ 111 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYC-----TSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWER 111 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhc-----CCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHH
Confidence 356677778888888888888888887765 34432 356677777788888888888877776531111111
Q ss_pred ----HHHHHHHHHHHcCCChHHHHHHHHhCCC
Q 038200 362 ----AHYWCMANLYAGAELTEEAEEILRKMPE 389 (523)
Q Consensus 362 ----~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 389 (523)
..|..| .+...+++.+|-+.|-+...
T Consensus 112 ~nrlk~~~gL--~~l~~r~f~~AA~~fl~~~~ 141 (177)
T PF10602_consen 112 RNRLKVYEGL--ANLAQRDFKEAAELFLDSLS 141 (177)
T ss_pred HHHHHHHHHH--HHHHhchHHHHHHHHHccCc
Confidence 222222 23456788888888887764
No 281
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=93.61 E-value=1.2 Score=37.18 Aligned_cols=98 Identities=13% Similarity=0.072 Sum_probs=68.1
Q ss_pred hHHHHHHHHHHHcCCChHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcC--CCChhhHH--
Q 038200 361 FAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMD--PQDFSRYQ-- 436 (523)
Q Consensus 361 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--p~~~~~~~-- 436 (523)
...+..+...|.+.|+.++|.+.+.++.+...+...-...+..++..+...+++..+.....++...- +.+...-+
T Consensus 36 r~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrl 115 (177)
T PF10602_consen 36 RMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRL 115 (177)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHH
Confidence 35677888889999999999999999886544444445667777888888899999988888887632 22222111
Q ss_pred --HHHHHHHhcCChhHHHHHHHHH
Q 038200 437 --FLLNVYAVAGQWEDVARVRELM 458 (523)
Q Consensus 437 --~l~~~~~~~g~~~~A~~~~~~m 458 (523)
.-+-.+...+++.+|-+.|-..
T Consensus 116 k~~~gL~~l~~r~f~~AA~~fl~~ 139 (177)
T PF10602_consen 116 KVYEGLANLAQRDFKEAAELFLDS 139 (177)
T ss_pred HHHHHHHHHHhchHHHHHHHHHcc
Confidence 2233345678888888877654
No 282
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=93.56 E-value=7.5 Score=37.59 Aligned_cols=92 Identities=11% Similarity=0.123 Sum_probs=39.4
Q ss_pred CHHHHHHHHHHHhccccHHHHHHHHHHHHHcCCCCchHHHHHHhhhhhhcCChHHHHHHHHhcCC---CChHHHHHHHHH
Q 038200 218 NDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMAD---RNLVCWNAMILG 294 (523)
Q Consensus 218 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~ 294 (523)
|.....+++..+..+..+.-++.+-.+|...| -+...+..++.+|... ..+.-..+++++.+ .|++.-..|...
T Consensus 65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfnDvv~~ReLa~~ 141 (711)
T COG1747 65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFNDVVIGRELADK 141 (711)
T ss_pred cchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcchhHHHHHHHHHH
Confidence 33444444555555555554555555554433 2344444455544444 33334444443332 222222333333
Q ss_pred HHhcCChHHHHHHHHHHHh
Q 038200 295 HCIHGKPEEGIKLFTALVN 313 (523)
Q Consensus 295 ~~~~g~~~~a~~~~~~m~~ 313 (523)
|-+ ++...+...|.+...
T Consensus 142 yEk-ik~sk~a~~f~Ka~y 159 (711)
T COG1747 142 YEK-IKKSKAAEFFGKALY 159 (711)
T ss_pred HHH-hchhhHHHHHHHHHH
Confidence 322 444444444444443
No 283
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=93.52 E-value=6.4 Score=37.24 Aligned_cols=67 Identities=12% Similarity=0.140 Sum_probs=53.4
Q ss_pred CchHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCC----CChhhHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 038200 395 SFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDP----QDFSRYQFLLNVYAVAGQWEDVARVRELMKKR 461 (523)
Q Consensus 395 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p----~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 461 (523)
.....+|..+...+++.|.++.|...+.++....+ ..+.+...-+..+...|+..+|+..++.....
T Consensus 143 ~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~ 213 (352)
T PF02259_consen 143 EELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKC 213 (352)
T ss_pred hHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 44566788888889999999999999988887542 14567777888889999999999988887763
No 284
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=93.48 E-value=0.42 Score=40.22 Aligned_cols=91 Identities=10% Similarity=0.084 Sum_probs=44.8
Q ss_pred hcCCHHHHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCCceeEEEeCCeEEEEecCCCCch
Q 038200 410 FQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLKEVVEKLKVGHFWRG 489 (523)
Q Consensus 410 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 489 (523)
..|-...|.--|.+...+.|+-+.+|+.|+--+...|+++.|.+.|+...+ .+|+.....++.-+..+..+. ..
T Consensus 77 SlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~E----LDp~y~Ya~lNRgi~~YY~gR--~~ 150 (297)
T COG4785 77 SLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLE----LDPTYNYAHLNRGIALYYGGR--YK 150 (297)
T ss_pred hhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhc----cCCcchHHHhccceeeeecCc--hH
Confidence 334444555555555556666566666666666666666666666665532 234333333333333332222 33
Q ss_pred HHHHHHHHHHhcccCCc
Q 038200 490 GMKEEVNKMMECRQSRS 506 (523)
Q Consensus 490 ~~~~~l~~~~~~~~~~~ 506 (523)
=+.+.+.+....+|+++
T Consensus 151 LAq~d~~~fYQ~D~~DP 167 (297)
T COG4785 151 LAQDDLLAFYQDDPNDP 167 (297)
T ss_pred hhHHHHHHHHhcCCCCh
Confidence 34444455555555444
No 285
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=93.46 E-value=11 Score=38.99 Aligned_cols=125 Identities=10% Similarity=-0.011 Sum_probs=72.6
Q ss_pred HHHHHHHhhccCCchhHHHHhccCCC----CCcccHH----HH-HHHHHhCCCchHHHHHHHHHHHCC---CCCCcccHH
Q 038200 24 TINLLKHSADFGSPDYTVLVFKCINN----PGTFCVN----AV-IKAYSNSCVPDQGVVFYLQMIKNG---FMPNSYTFV 91 (523)
Q Consensus 24 ~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~----~l-l~~~~~~~~~~~a~~~~~~m~~~~---~~p~~~~~~ 91 (523)
...++..+.+.+... |.+..++..+ .....|. -+ +..+...+++..|.+.++.....- ..|-...+.
T Consensus 103 ~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~ 181 (608)
T PF10345_consen 103 QFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLA 181 (608)
T ss_pred HHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHH
Confidence 344556666655544 8877776431 1122222 22 222223479999999998876532 244445556
Q ss_pred HHHHHHH--ccCCchHHHHHHHHHHHhCC---------CCCchHHHHHHHHH--HccCChHHHHHHHhhcC
Q 038200 92 SLFGSCA--KTGCVERGGMCHGLALKNGV---------DFELPVMNSLINMY--GCFGAMDCARNMFVQMS 149 (523)
Q Consensus 92 ~ll~~~~--~~~~~~~a~~~~~~~~~~~~---------~~~~~~~~~l~~~~--~~~g~~~~A~~~~~~~~ 149 (523)
.++.+.. +.+..+++.+.++.+..... .|...+|..+++.+ ...|+++.+...++++.
T Consensus 182 ~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq 252 (608)
T PF10345_consen 182 SLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQ 252 (608)
T ss_pred HHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 6666654 45667777777777744322 23456677776654 46788777777766653
No 286
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.45 E-value=3.6 Score=33.54 Aligned_cols=116 Identities=9% Similarity=0.005 Sum_probs=53.6
Q ss_pred cCChHHHHHHHHhcCCCChHHHHHHH-----HHHHhcCChHHHHHHHHHHHhCCCCCCCcCCCHH-HHHHHH--HHHhhc
Q 038200 267 CQKVEVAQRVFDSMADRNLVCWNAMI-----LGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEI-TFIGVI--CACVRA 338 (523)
Q Consensus 267 ~~~~~~a~~~~~~~~~~~~~~~~~li-----~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~p~~~-~~~~ll--~~~~~~ 338 (523)
.+..++|+.-|..+.+.+...|-.|. ......|+...|...|.+.-... ..|-.. -...|= -.+...
T Consensus 71 ~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt-----~~P~~~rd~ARlraa~lLvD~ 145 (221)
T COG4649 71 ENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADT-----SIPQIGRDLARLRAAYLLVDN 145 (221)
T ss_pred cCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccC-----CCcchhhHHHHHHHHHHHhcc
Confidence 34455555555555443333332222 22445566666666666655433 222211 111111 123445
Q ss_pred CcHHHHHHHHHHhhHhcCCCCChHHHHHHHHHHHcCCChHHHHHHHHhCC
Q 038200 339 ELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMP 388 (523)
Q Consensus 339 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 388 (523)
|.+++...-.+.+... +.+.....-..|.-+-.+.|++..|.+.|..+.
T Consensus 146 gsy~dV~srvepLa~d-~n~mR~sArEALglAa~kagd~a~A~~~F~qia 194 (221)
T COG4649 146 GSYDDVSSRVEPLAGD-GNPMRHSAREALGLAAYKAGDFAKAKSWFVQIA 194 (221)
T ss_pred ccHHHHHHHhhhccCC-CChhHHHHHHHHhHHHHhccchHHHHHHHHHHH
Confidence 5555555555554442 333333444455555556666666666666555
No 287
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=93.43 E-value=19 Score=41.91 Aligned_cols=62 Identities=6% Similarity=-0.100 Sum_probs=49.2
Q ss_pred hHHHHHHhhhhhhcCChHHHHHHHHhcCC-CChHHHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 038200 254 IILDTALIDLYSKCQKVEVAQRVFDSMAD-RNLVCWNAMILGHCIHGKPEEGIKLFTALVNGT 315 (523)
Q Consensus 254 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 315 (523)
..+|-.......+.|.++.|...+-...+ .-...+--..+.+.+.|+...|+.++++.....
T Consensus 1670 ge~wLqsAriaR~aG~~q~A~nall~A~e~r~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~ 1732 (2382)
T KOG0890|consen 1670 GECWLQSARIARLAGHLQRAQNALLNAKESRLPEIVLERAKLLWQTGDELNALSVLQEILSKN 1732 (2382)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHhhhhcccchHHHHHHHHHHhhccHHHHHHHHHHHHHhh
Confidence 46777888888889999999877665544 445566677788899999999999999988654
No 288
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=93.40 E-value=8 Score=37.41 Aligned_cols=90 Identities=13% Similarity=0.197 Sum_probs=62.7
Q ss_pred HHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHcCCCCchHHHHHHhhhhh
Q 038200 186 SWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYS 265 (523)
Q Consensus 186 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 265 (523)
..-+++..+.....+.-+..+..+|..-| -+-..|..++.+|... ..+.-..+++++++..+. |+..-..|...|.
T Consensus 68 ~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReLa~~yE 143 (711)
T COG1747 68 CLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGRELADKYE 143 (711)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHHHHHHH
Confidence 34556677777777777777888887754 4667788888888777 556677788877776554 5555566666666
Q ss_pred hcCChHHHHHHHHhc
Q 038200 266 KCQKVEVAQRVFDSM 280 (523)
Q Consensus 266 ~~~~~~~a~~~~~~~ 280 (523)
+ ++.+++..+|.++
T Consensus 144 k-ik~sk~a~~f~Ka 157 (711)
T COG1747 144 K-IKKSKAAEFFGKA 157 (711)
T ss_pred H-hchhhHHHHHHHH
Confidence 5 6777777776664
No 289
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.21 E-value=3.5 Score=34.33 Aligned_cols=91 Identities=15% Similarity=0.103 Sum_probs=42.2
Q ss_pred HHhhcCcHHHHHHHHHHhhHhcCCCCC--hHHHHHHHHHHHcCCChHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHhc
Q 038200 334 ACVRAELLTEGRKYFRQMIDFYKIKPN--FAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQ 411 (523)
Q Consensus 334 ~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 411 (523)
.+...+++++|...++..... ....+ ...--.|.+.....|.+++|+..++..... .-.......-...+...
T Consensus 98 ~~ve~~~~d~A~aqL~~~l~~-t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~----~w~~~~~elrGDill~k 172 (207)
T COG2976 98 AEVEANNLDKAEAQLKQALAQ-TKDENLKALAALRLARVQLQQKKADAALKTLDTIKEE----SWAAIVAELRGDILLAK 172 (207)
T ss_pred HHHhhccHHHHHHHHHHHHcc-chhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccc----cHHHHHHHHhhhHHHHc
Confidence 445556666666665555432 10000 111123344455556666666666555521 11122222223345555
Q ss_pred CCHHHHHHHHHHHhhcCC
Q 038200 412 GAVAMVERLAKSFVDMDP 429 (523)
Q Consensus 412 g~~~~a~~~~~~~~~~~p 429 (523)
|+-++|+..|+++.+.++
T Consensus 173 g~k~~Ar~ay~kAl~~~~ 190 (207)
T COG2976 173 GDKQEARAAYEKALESDA 190 (207)
T ss_pred CchHHHHHHHHHHHHccC
Confidence 666666666666655543
No 290
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=93.08 E-value=0.21 Score=30.36 Aligned_cols=31 Identities=16% Similarity=0.117 Sum_probs=27.6
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 038200 432 FSRYQFLLNVYAVAGQWEDVARVRELMKKRR 462 (523)
Q Consensus 432 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 462 (523)
|.++..++.+|.+.|++++|.+++++..+..
T Consensus 1 p~~~~~la~~~~~~G~~~~A~~~~~~~l~~~ 31 (44)
T PF13428_consen 1 PAAWLALARAYRRLGQPDEAERLLRRALALD 31 (44)
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 4578899999999999999999999997753
No 291
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=93.00 E-value=2.2 Score=40.63 Aligned_cols=144 Identities=6% Similarity=-0.062 Sum_probs=100.6
Q ss_pred HhhcCcHHHHHHHHHHhhHhcCCCCChHHHHHHHHHHHcCCChHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHhcCCH
Q 038200 335 CVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAV 414 (523)
Q Consensus 335 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 414 (523)
-...|+.-.|-+-+......+.-.|+ ........+...|+++.+.+.+...... +.....+..+++......|++
T Consensus 299 ~~~~gd~~aas~~~~~~lr~~~~~p~--~i~l~~~i~~~lg~ye~~~~~~s~~~~~---~~s~~~~~~~~~r~~~~l~r~ 373 (831)
T PRK15180 299 QLADGDIIAASQQLFAALRNQQQDPV--LIQLRSVIFSHLGYYEQAYQDISDVEKI---IGTTDSTLRCRLRSLHGLARW 373 (831)
T ss_pred HhhccCHHHHHHHHHHHHHhCCCCch--hhHHHHHHHHHhhhHHHHHHHhhchhhh---hcCCchHHHHHHHhhhchhhH
Confidence 34557777776555555553344444 3333444567789999999988776532 344556777888888889999
Q ss_pred HHHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCCceeEEEeCCeEEEEecCC
Q 038200 415 AMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLKEVVEKLKVGH 485 (523)
Q Consensus 415 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~ 485 (523)
+.|....+.++..+-.++++...-+..-...|-++++.-.|+++...+.+.+. .|+-+.+....|-.++
T Consensus 374 ~~a~s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~~~--g~v~~~~~~~~~~~~~ 442 (831)
T PRK15180 374 REALSTAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPETQS--GWVNFLSSTQYFNDGN 442 (831)
T ss_pred HHHHHHHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCChhcc--cceeeeccceeccCcc
Confidence 99999999998877777776666666666778899999999999776544444 4577777777776666
No 292
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=92.94 E-value=7.1 Score=35.52 Aligned_cols=118 Identities=10% Similarity=0.052 Sum_probs=57.2
Q ss_pred hcCCchHHHHHHHHHHHCC--CCCCHH------HHHHHHHHHhccc-cHHHHHHHHHHHHHc--------CCCCc-----
Q 038200 196 KSGNPGCSLKLFREMMKSG--FRGNDK------TMASVLTACGRSA-RFNEGRSVHGYTVRT--------SLKPN----- 253 (523)
Q Consensus 196 ~~~~~~~a~~~~~~m~~~~--~~p~~~------~~~~ll~~~~~~~-~~~~a~~~~~~~~~~--------~~~~~----- 253 (523)
+.|+.+.|..++.+..... ..|+.. .|+.-.. ....+ +++.|...+++..+. ...++
T Consensus 5 ~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~-l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr 83 (278)
T PF08631_consen 5 KQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKS-LLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELR 83 (278)
T ss_pred hhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHH-HHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHH
Confidence 4566666666666554422 122221 2222222 23334 666666555554432 11122
Q ss_pred hHHHHHHhhhhhhcCChH---HHHHHHHhcCC--CC-hHHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 038200 254 IILDTALIDLYSKCQKVE---VAQRVFDSMAD--RN-LVCWNAMILGHCIHGKPEEGIKLFTALVNG 314 (523)
Q Consensus 254 ~~~~~~l~~~~~~~~~~~---~a~~~~~~~~~--~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 314 (523)
..+...++.+|...+..+ +|..+++.+.. ++ +..+..-+..+.+.++.+.+.+.+.+|+..
T Consensus 84 ~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~ 150 (278)
T PF08631_consen 84 LSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRS 150 (278)
T ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHh
Confidence 234555666666655533 34444444422 22 334444455555566777777777777664
No 293
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=92.94 E-value=6.1 Score=34.72 Aligned_cols=237 Identities=14% Similarity=0.131 Sum_probs=131.8
Q ss_pred HHHHHHHHHHhcCCchHHHHHHHHHHHC---CC--CCCHHHHHHHHHHHhccccHHHHHHHHHHHHHc----C-CCCchH
Q 038200 186 SWNIMISGYSKSGNPGCSLKLFREMMKS---GF--RGNDKTMASVLTACGRSARFNEGRSVHGYTVRT----S-LKPNII 255 (523)
Q Consensus 186 ~~~~li~~~~~~~~~~~a~~~~~~m~~~---~~--~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~-~~~~~~ 255 (523)
+...++..+.+.+++++.+..|.+|..- .+ .-+..+.+.++.-.+...+.+.-..+|+.-.+. . -..--.
T Consensus 67 ALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFK 146 (440)
T KOG1464|consen 67 ALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFK 146 (440)
T ss_pred HHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeee
Confidence 3445666777777777777777766431 11 123445666666555555555555555433221 0 011112
Q ss_pred HHHHHhhhhhhcCChHHHHHHHHhcCC------------C---ChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCC
Q 038200 256 LDTALIDLYSKCQKVEVAQRVFDSMAD------------R---NLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGS 320 (523)
Q Consensus 256 ~~~~l~~~~~~~~~~~~a~~~~~~~~~------------~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~ 320 (523)
+-+.|...|...+.+.+..+++.++.. . -...|..-|+.|...++-.+-..++++...-. +
T Consensus 147 TNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiK----S 222 (440)
T KOG1464|consen 147 TNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIK----S 222 (440)
T ss_pred ccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhh----c
Confidence 334566677777777777777766532 1 12467777888888888888888888776533 1
Q ss_pred cCCCHHHHHHHHHHH-----hhcCcHHHHHHHHHHhhHhcC---CCC--ChHHHHHHHHHHHcCCChHHHHHHHHhCCCC
Q 038200 321 ISPDEITFIGVICAC-----VRAELLTEGRKYFRQMIDFYK---IKP--NFAHYWCMANLYAGAELTEEAEEILRKMPED 390 (523)
Q Consensus 321 ~~p~~~~~~~ll~~~-----~~~~~~~~a~~~~~~~~~~~~---~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 390 (523)
.-|.+..... |+-| .+.|.+++|..-|-++.+.|. -+. ..--|..|..++.++|-- =|+.-..+
T Consensus 223 AIPHPlImGv-IRECGGKMHlreg~fe~AhTDFFEAFKNYDEsGspRRttCLKYLVLANMLmkS~iN-----PFDsQEAK 296 (440)
T KOG1464|consen 223 AIPHPLIMGV-IRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLVLANMLMKSGIN-----PFDSQEAK 296 (440)
T ss_pred cCCchHHHhH-HHHcCCccccccchHHHHHhHHHHHHhcccccCCcchhHHHHHHHHHHHHHHcCCC-----CCcccccC
Confidence 4566655544 4444 356788887654444433232 221 223456667777776521 01111111
Q ss_pred CCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChh
Q 038200 391 NDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFS 433 (523)
Q Consensus 391 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 433 (523)
...-.|.......++.+|. .++..+.++++..-...--+||.
T Consensus 297 PyKNdPEIlAMTnlv~aYQ-~NdI~eFE~Il~~~~~~IM~DpF 338 (440)
T KOG1464|consen 297 PYKNDPEILAMTNLVAAYQ-NNDIIEFERILKSNRSNIMDDPF 338 (440)
T ss_pred CCCCCHHHHHHHHHHHHHh-cccHHHHHHHHHhhhccccccHH
Confidence 2234566777778887774 45677777776655543333443
No 294
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=92.75 E-value=9.9 Score=36.71 Aligned_cols=92 Identities=8% Similarity=-0.021 Sum_probs=56.6
Q ss_pred HHHHHHHHcCCChHHHHHHHHhCCCCCCCCCchHHHHHHHHHHH--HhcCCHHHHHHHHHHHhhcCCCChhhHHHHHHHH
Q 038200 365 WCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLC--RFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVY 442 (523)
Q Consensus 365 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 442 (523)
+.+++-+.+.|-..+|..++...... .+|....+..++..- ...-+...+..+++.+...-..++..|......-
T Consensus 464 s~~l~~~~e~~~~~~ark~y~~l~~l---pp~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~fg~d~~lw~~y~~~e 540 (568)
T KOG2396|consen 464 SKYLDWAYESGGYKKARKVYKSLQEL---PPFSLDLFRKMIQFEKEQESCNLANIREYYDRALREFGADSDLWMDYMKEE 540 (568)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHhC---CCccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHHhCCChHHHHHHHHhh
Confidence 45666666777777777777777653 344556666665532 2223366777777777653225667777666666
Q ss_pred HhcCChhHHHHHHHHHH
Q 038200 443 AVAGQWEDVARVRELMK 459 (523)
Q Consensus 443 ~~~g~~~~A~~~~~~m~ 459 (523)
...|+.+-+-.++.+..
T Consensus 541 ~~~g~~en~~~~~~ra~ 557 (568)
T KOG2396|consen 541 LPLGRPENCGQIYWRAM 557 (568)
T ss_pred ccCCCcccccHHHHHHH
Confidence 67777777666655543
No 295
>PRK11619 lytic murein transglycosylase; Provisional
Probab=92.61 E-value=14 Score=38.12 Aligned_cols=118 Identities=14% Similarity=0.074 Sum_probs=62.1
Q ss_pred cCChHHHHHHHHHHHhCCCCCCCcCCCH--HHHHHHHHHHhhcCcHHHHHHHHHHhhHhcCCCCChHHHHHHHHHHHcCC
Q 038200 298 HGKPEEGIKLFTALVNGTVAGGSISPDE--ITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAE 375 (523)
Q Consensus 298 ~g~~~~a~~~~~~m~~~~~~~~~~~p~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 375 (523)
..+.+.|..++....... ...+.. .....+.......+...++...+...... . .+......-+....+.+
T Consensus 254 r~d~~~A~~~~~~~~~~~----~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~-~--~~~~~~e~r~r~Al~~~ 326 (644)
T PRK11619 254 RQDAENARLMIPSLVRAQ----KLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMR-S--QSTSLLERRVRMALGTG 326 (644)
T ss_pred HhCHHHHHHHHHHHHHhc----CCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhcccc-c--CCcHHHHHHHHHHHHcc
Confidence 445577777777664433 022222 22333333333332245566666655432 1 23344444455555777
Q ss_pred ChHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 038200 376 LTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFV 425 (523)
Q Consensus 376 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 425 (523)
+++.+...+..|.... .-...-..=+..++...|+.++|..+|+.+.
T Consensus 327 dw~~~~~~i~~L~~~~---~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a 373 (644)
T PRK11619 327 DRRGLNTWLARLPMEA---KEKDEWRYWQADLLLEQGRKAEAEEILRQLM 373 (644)
T ss_pred CHHHHHHHHHhcCHhh---ccCHhhHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 8877777777776421 2222233334445555788888888877764
No 296
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=92.29 E-value=8.7 Score=34.96 Aligned_cols=93 Identities=8% Similarity=-0.006 Sum_probs=51.1
Q ss_pred HHHHHHHHHhccccHH---HHHHHHHHHHHcCCCCchHHHHHHhhhhhhcCChHHHHHHHHhcCCC---ChHHHHHHHHH
Q 038200 221 TMASVLTACGRSARFN---EGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADR---NLVCWNAMILG 294 (523)
Q Consensus 221 ~~~~ll~~~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~li~~ 294 (523)
++..++.++...+..+ +|..+++.+.... +-...++-.-+..+.+.++.+.+.+.+.+|... ....+..++..
T Consensus 86 iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~-~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~~e~~~~~~l~~ 164 (278)
T PF08631_consen 86 ILRLLANAYLEWDTYESVEKALNALRLLESEY-GNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDHSESNFDSILHH 164 (278)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcccccchHHHHHHH
Confidence 5566777776666544 4555666664442 223445545566666677888888888877542 22334444433
Q ss_pred H---HhcCChHHHHHHHHHHHhCC
Q 038200 295 H---CIHGKPEEGIKLFTALVNGT 315 (523)
Q Consensus 295 ~---~~~g~~~~a~~~~~~m~~~~ 315 (523)
+ ... ....|...+..+....
T Consensus 165 i~~l~~~-~~~~a~~~ld~~l~~r 187 (278)
T PF08631_consen 165 IKQLAEK-SPELAAFCLDYLLLNR 187 (278)
T ss_pred HHHHHhh-CcHHHHHHHHHHHHHH
Confidence 3 332 3345555555555444
No 297
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=92.02 E-value=0.35 Score=27.19 Aligned_cols=29 Identities=10% Similarity=0.195 Sum_probs=15.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhcCC
Q 038200 401 WVSLLSLCRFQGAVAMVERLAKSFVDMDP 429 (523)
Q Consensus 401 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~p 429 (523)
|..+...+...|++++|...++++++++|
T Consensus 4 ~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 4 YYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 34444455555555555555555555555
No 298
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=91.92 E-value=1.1 Score=39.97 Aligned_cols=81 Identities=11% Similarity=0.129 Sum_probs=54.0
Q ss_pred hHHHHHHhhhhhhcCChHHHHHHHHhcCC---CChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcCCCHHHHHH
Q 038200 254 IILDTALIDLYSKCQKVEVAQRVFDSMAD---RNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIG 330 (523)
Q Consensus 254 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~ 330 (523)
..++..++..+..+|+++.+...++++.. -+...|..+|.+|.+.|+...|+..|+++.+.-....|+.|...+...
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~ 232 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRAL 232 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence 45566677777777777777777777654 255678888888888888888888777776633333346666655444
Q ss_pred HHHH
Q 038200 331 VICA 334 (523)
Q Consensus 331 ll~~ 334 (523)
....
T Consensus 233 y~~~ 236 (280)
T COG3629 233 YEEI 236 (280)
T ss_pred HHHH
Confidence 4433
No 299
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=91.88 E-value=4.2 Score=34.04 Aligned_cols=102 Identities=11% Similarity=-0.026 Sum_probs=70.1
Q ss_pred HHhhcCcHHHHHHHHHHhhHhcCCCCC-----hHHHHHHHHHHHcCCChHHHHHHHHhCCCCCCCCCch-HHHHHHHHHH
Q 038200 334 ACVRAELLTEGRKYFRQMIDFYKIKPN-----FAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFE-SIMWVSLLSL 407 (523)
Q Consensus 334 ~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~~~l~~~ 407 (523)
-+...|++++|..-|..+.+. .++. ...|..-..++.+.+.++.|++-..+.++ +.|. ...+..-..+
T Consensus 104 ~~F~ngdyeeA~skY~~Ale~--cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaie----l~pty~kAl~RRAea 177 (271)
T KOG4234|consen 104 ELFKNGDYEEANSKYQEALES--CPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIE----LNPTYEKALERRAEA 177 (271)
T ss_pred HhhhcccHHHHHHHHHHHHHh--CccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHh----cCchhHHHHHHHHHH
Confidence 356678888888888888773 3332 34455556677888899999888888775 3442 2333333556
Q ss_pred HHhcCCHHHHHHHHHHHhhcCCCChhhHHHHHHH
Q 038200 408 CRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNV 441 (523)
Q Consensus 408 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 441 (523)
|.+...++.|..-|+++.+.+|....+-...+++
T Consensus 178 yek~ek~eealeDyKki~E~dPs~~ear~~i~rl 211 (271)
T KOG4234|consen 178 YEKMEKYEEALEDYKKILESDPSRREAREAIARL 211 (271)
T ss_pred HHhhhhHHHHHHHHHHHHHhCcchHHHHHHHHhc
Confidence 7788889999999999999999655554444443
No 300
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=91.71 E-value=0.43 Score=27.42 Aligned_cols=24 Identities=13% Similarity=0.236 Sum_probs=14.4
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHH
Q 038200 187 WNIMISGYSKSGNPGCSLKLFREM 210 (523)
Q Consensus 187 ~~~li~~~~~~~~~~~a~~~~~~m 210 (523)
|+.|...|.+.|++++|.++|++.
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~a 25 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQA 25 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHH
Confidence 555666666666666666666663
No 301
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=91.70 E-value=3.9 Score=29.76 Aligned_cols=60 Identities=17% Similarity=0.187 Sum_probs=44.6
Q ss_pred HHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHHHHH
Q 038200 161 SGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMA 223 (523)
Q Consensus 161 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~ 223 (523)
..+...|++++|..+.+.+..||...|.+|.. .+.|-.+++..-+.+|...| .|....|.
T Consensus 47 sSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce--~rlGl~s~l~~rl~rla~sg-~p~lq~Fa 106 (115)
T TIGR02508 47 SSLMNRGDYQSALQLGNKLCYPDLEPWLALCE--WRLGLGSALESRLNRLAASG-DPRLQTFV 106 (115)
T ss_pred HHHHccchHHHHHHhcCCCCCchHHHHHHHHH--HhhccHHHHHHHHHHHHhCC-CHHHHHHH
Confidence 45677899999999998888889888877643 46777777777777787776 45555444
No 302
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=91.55 E-value=8.4 Score=35.27 Aligned_cols=64 Identities=14% Similarity=0.241 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHhCCCCCCCcCCC-HHHHHHHHHHHhh-cCc--HHHHHHHHHHhhHhcCCCCChHHHHHHHHHH
Q 038200 302 EEGIKLFTALVNGTVAGGSISPD-EITFIGVICACVR-AEL--LTEGRKYFRQMIDFYKIKPNFAHYWCMANLY 371 (523)
Q Consensus 302 ~~a~~~~~~m~~~~~~~~~~~p~-~~~~~~ll~~~~~-~~~--~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 371 (523)
+.+..+|+.+.+.| ...+ ..-+.+-+-++.. ... ...+..+++.+.+. ++++....|..+.-..
T Consensus 160 ~~~E~~Y~~L~~~~-----f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~-~~kik~~~yp~lGlLa 227 (297)
T PF13170_consen 160 ERMEQCYQKLADAG-----FKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKN-GVKIKYMHYPTLGLLA 227 (297)
T ss_pred HHHHHHHHHHHHhC-----CCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHc-CCccccccccHHHHHH
Confidence 55677888888877 4443 3233333333332 222 45788899999997 9998888877654433
No 303
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=91.26 E-value=21 Score=37.28 Aligned_cols=221 Identities=12% Similarity=-0.011 Sum_probs=120.6
Q ss_pred HhccccHHHHHHHHHHHHHcCCCCch-------HHHHHHh-hhhhhcCChHHHHHHHHhcCC--------CChHHHHHHH
Q 038200 229 CGRSARFNEGRSVHGYTVRTSLKPNI-------ILDTALI-DLYSKCQKVEVAQRVFDSMAD--------RNLVCWNAMI 292 (523)
Q Consensus 229 ~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~-~~~~~~~~~~~a~~~~~~~~~--------~~~~~~~~li 292 (523)
.....++++|..++.++...-..|+. ..++.|- ......|++++|.++.+.... ..+..+..+.
T Consensus 425 ~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~ 504 (894)
T COG2909 425 LASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLG 504 (894)
T ss_pred HHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhh
Confidence 45667888888888877765333221 1233332 223456788888888776533 3556778888
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCCCCcCCCHH---HHHHHH--HHHhhcCc--HHHHHHHHHHhhHhcCCC-----CC
Q 038200 293 LGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEI---TFIGVI--CACVRAEL--LTEGRKYFRQMIDFYKIK-----PN 360 (523)
Q Consensus 293 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~p~~~---~~~~ll--~~~~~~~~--~~~a~~~~~~~~~~~~~~-----~~ 360 (523)
.+..-.|+++.|..+..+..+.. -.-+.. .+..+. ..+..+|. ..+....+......+... +-
T Consensus 505 ~a~~~~G~~~~Al~~~~~a~~~a-----~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~ 579 (894)
T COG2909 505 EAAHIRGELTQALALMQQAEQMA-----RQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFL 579 (894)
T ss_pred HHHHHhchHHHHHHHHHHHHHHH-----HHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhH
Confidence 88889999999998877665532 122222 223332 33556673 333344444443321111 12
Q ss_pred hHHHHHHHHHHHcCCChHHHHHHHHhCCCCCCCCCchHH----HHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCC-hh--
Q 038200 361 FAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESI----MWVSLLSLCRFQGAVAMVERLAKSFVDMDPQD-FS-- 433 (523)
Q Consensus 361 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~-~~-- 433 (523)
..++..+..++.+ .+.+..-.....+.+....|... .+..++......|+.+.|...+..+..+-.+. +.
T Consensus 580 ~~~r~~ll~~~~r---~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~ 656 (894)
T COG2909 580 VRIRAQLLRAWLR---LDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVD 656 (894)
T ss_pred HHHHHHHHHHHHH---HhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCch
Confidence 2344455555554 44444433333322222233221 22355667788999999999999888732211 11
Q ss_pred ----hHHHHHHHHHhcCChhHHHHHHHH
Q 038200 434 ----RYQFLLNVYAVAGQWEDVARVREL 457 (523)
Q Consensus 434 ----~~~~l~~~~~~~g~~~~A~~~~~~ 457 (523)
++..-...-...|+..++.....+
T Consensus 657 ~~a~~~~v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 657 YLAAAYKVKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred HHHHHHHhhHHHhcccCCHHHHHHHHHh
Confidence 111222233467888887766554
No 304
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=90.80 E-value=0.69 Score=41.76 Aligned_cols=114 Identities=11% Similarity=0.020 Sum_probs=80.5
Q ss_pred HHHHHhhcCcHHHHHHHHHHhhHhcCCCCChHHHHHHHHHHHcCCChHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHh
Q 038200 331 VICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRF 410 (523)
Q Consensus 331 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 410 (523)
-..-|.++|.+++|+..|...... .+-|+.++..-..+|.+..++..|..-....+..+ ..-...|..-..+-..
T Consensus 103 ~GN~yFKQgKy~EAIDCYs~~ia~--~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd---~~Y~KAYSRR~~AR~~ 177 (536)
T KOG4648|consen 103 RGNTYFKQGKYEEAIDCYSTAIAV--YPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALD---KLYVKAYSRRMQARES 177 (536)
T ss_pred hhhhhhhccchhHHHHHhhhhhcc--CCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhh---HHHHHHHHHHHHHHHH
Confidence 355688999999999999998862 33388888888999999999998887777766321 1223344455555556
Q ss_pred cCCHHHHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChhHHHH
Q 038200 411 QGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVAR 453 (523)
Q Consensus 411 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 453 (523)
.|+.++|.+-++.+++++|++.+ |-..|.+.....|+.-
T Consensus 178 Lg~~~EAKkD~E~vL~LEP~~~E----LkK~~a~i~Sl~E~~I 216 (536)
T KOG4648|consen 178 LGNNMEAKKDCETVLALEPKNIE----LKKSLARINSLRERKI 216 (536)
T ss_pred HhhHHHHHHhHHHHHhhCcccHH----HHHHHHHhcchHhhhH
Confidence 78899999999999999997544 3344444444444433
No 305
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=90.73 E-value=8.2 Score=31.65 Aligned_cols=133 Identities=9% Similarity=0.053 Sum_probs=76.0
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHcCCCCchHHHHHHhhhhhhcC--ChHHHHHHHHhcC
Q 038200 204 LKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQ--KVEVAQRVFDSMA 281 (523)
Q Consensus 204 ~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~ 281 (523)
+++++.+.+.+++|+...+..+++.+.+.|++....+ +++.++-+|.......+-.+.... -..-|.+++.++.
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~q----llq~~Vi~DSk~lA~~LLs~~~~~~~~~Ql~lDMLkRL~ 89 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQ----LLQYHVIPDSKPLACQLLSLGNQYPPAYQLGLDMLKRLG 89 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHH----HHhhcccCCcHHHHHHHHHhHccChHHHHHHHHHHHHhh
Confidence 4566777778888888899999999998888665444 344444444433333332222111 1333444444443
Q ss_pred CCChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhH
Q 038200 282 DRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMID 353 (523)
Q Consensus 282 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 353 (523)
..+..++..+...|++-+|+++.+...... .++. ..++.+..+.++...-..+++-..+
T Consensus 90 ----~~~~~iievLL~~g~vl~ALr~ar~~~~~~------~~~~---~~fLeAA~~~~D~~lf~~V~~ff~~ 148 (167)
T PF07035_consen 90 ----TAYEEIIEVLLSKGQVLEALRYARQYHKVD------SVPA---RKFLEAAANSNDDQLFYAVFRFFEE 148 (167)
T ss_pred ----hhHHHHHHHHHhCCCHHHHHHHHHHcCCcc------cCCH---HHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 245556677778888888888877653321 2222 3355555555655544444444443
No 306
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=90.69 E-value=1.9 Score=31.47 Aligned_cols=62 Identities=13% Similarity=0.074 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHhCCCCCCCcCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhHhcCCCCChHHHHHHHHH
Q 038200 302 EEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANL 370 (523)
Q Consensus 302 ~~a~~~~~~m~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 370 (523)
-+..+-++.+.... +.|++....+.+.+|.+.+++..|.++|+.++.+.+ +....|..+++-
T Consensus 27 we~rrglN~l~~~D-----lVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~--~~~~~Y~~~lqE 88 (108)
T PF02284_consen 27 WELRRGLNNLFGYD-----LVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCG--NKKEIYPYILQE 88 (108)
T ss_dssp HHHHHHHHHHTTSS-----B---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTT--T-TTHHHHHHHH
T ss_pred HHHHHHHHHHhccc-----cCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcc--ChHHHHHHHHHH
Confidence 35566667777666 889999999999999999999999999999988533 333367666653
No 307
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=90.55 E-value=2.4 Score=30.65 Aligned_cols=63 Identities=13% Similarity=0.094 Sum_probs=47.0
Q ss_pred ChHHHHHHHHHHHhCCCCCCCcCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhHhcCCCCChHHHHHHHH
Q 038200 300 KPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMAN 369 (523)
Q Consensus 300 ~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 369 (523)
+.-++.+-++.+.... ..|++....+.+++|.+.+++..|.++|+.++.+ ...+...|..+++
T Consensus 22 D~we~rr~mN~l~~~D-----lVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K--~~~~~~~y~~~lq 84 (103)
T cd00923 22 DGWELRRGLNNLFGYD-----LVPEPKVIEAALRACRRVNDFALAVRILEAIKDK--CGAHKEIYPYILQ 84 (103)
T ss_pred cHHHHHHHHHHHhccc-----cCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--ccCchhhHHHHHH
Confidence 4455666677777766 8899999999999999999999999999988864 3224456665554
No 308
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=90.52 E-value=8.4 Score=32.49 Aligned_cols=78 Identities=9% Similarity=0.023 Sum_probs=57.5
Q ss_pred HHcCCChHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCC----ChhhHHHHHHHHHhcC
Q 038200 371 YAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQ----DFSRYQFLLNVYAVAG 446 (523)
Q Consensus 371 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~----~~~~~~~l~~~~~~~g 446 (523)
..+.|+ ++|.+.|-++... +.--++..... +..|....|.+++..++-+++++.+. |+.++..|+.+|.+.|
T Consensus 117 Wsr~~d-~~A~~~fL~~E~~--~~l~t~elq~a-LAtyY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~ 192 (203)
T PF11207_consen 117 WSRFGD-QEALRRFLQLEGT--PELETAELQYA-LATYYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLK 192 (203)
T ss_pred hhccCc-HHHHHHHHHHcCC--CCCCCHHHHHH-HHHHHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhc
Confidence 455565 7888888888833 33344444444 44455578899999999999985332 7899999999999999
Q ss_pred ChhHHH
Q 038200 447 QWEDVA 452 (523)
Q Consensus 447 ~~~~A~ 452 (523)
+++.|-
T Consensus 193 ~~e~AY 198 (203)
T PF11207_consen 193 NYEQAY 198 (203)
T ss_pred chhhhh
Confidence 999874
No 309
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=90.46 E-value=0.65 Score=25.98 Aligned_cols=29 Identities=17% Similarity=0.245 Sum_probs=25.1
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 038200 433 SRYQFLLNVYAVAGQWEDVARVRELMKKR 461 (523)
Q Consensus 433 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 461 (523)
..+..++.+|...|++++|++.+++..+.
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l 30 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 57889999999999999999999998664
No 310
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=90.28 E-value=1.2 Score=40.29 Aligned_cols=94 Identities=14% Similarity=0.105 Sum_probs=69.9
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCCCcCC-CHHHHHHHHHHHhhcCcHHHHHHHHHHhhHhcCCCCChHHHHHHHHH
Q 038200 292 ILGHCIHGKPEEGIKLFTALVNGTVAGGSISP-DEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANL 370 (523)
Q Consensus 292 i~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 370 (523)
..-|.++|.+++|++.|.+... +.| |.+++..-..+|.+...+..|..-....... -..-...|..-+.+
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia-------~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaL--d~~Y~KAYSRR~~A 174 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIA-------VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIAL--DKLYVKAYSRRMQA 174 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhc-------cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHh--hHHHHHHHHHHHHH
Confidence 4569999999999999999887 889 8999999999999999999888877776653 11123444444444
Q ss_pred HHcCCChHHHHHHHHhCCCCCCCCCchH
Q 038200 371 YAGAELTEEAEEILRKMPEDNDNMSFES 398 (523)
Q Consensus 371 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 398 (523)
-...|+..+|.+-++..++ ++|+.
T Consensus 175 R~~Lg~~~EAKkD~E~vL~----LEP~~ 198 (536)
T KOG4648|consen 175 RESLGNNMEAKKDCETVLA----LEPKN 198 (536)
T ss_pred HHHHhhHHHHHHhHHHHHh----hCccc
Confidence 4556677777777777664 56764
No 311
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=90.24 E-value=8.6 Score=31.12 Aligned_cols=117 Identities=16% Similarity=0.145 Sum_probs=65.3
Q ss_pred HHHHHHHH---HHhhcCcHHHHHHHHHHhhHhcCCCCChHH-HHHHHHHHHcCCChHHHHHHHHhCCCCCCCCCchHHHH
Q 038200 326 ITFIGVIC---ACVRAELLTEGRKYFRQMIDFYKIKPNFAH-YWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMW 401 (523)
Q Consensus 326 ~~~~~ll~---~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 401 (523)
.+.+.|+. .-.+.++.+++..++..+.- +.|.... -..-...+...|++.+|..+|+++.+. .|....-
T Consensus 8 ~iv~gLie~~~~al~~~~~~D~e~lL~ALrv---LRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~----~~~~p~~ 80 (160)
T PF09613_consen 8 EIVGGLIEVLSVALRLGDPDDAEALLDALRV---LRPEFPELDLFDGWLHIVRGDWDDALRLLRELEER----APGFPYA 80 (160)
T ss_pred HHHHHHHHHHHHHHccCChHHHHHHHHHHHH---hCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhcc----CCCChHH
Confidence 34444444 34567888999999988875 4554332 223345567889999999999998754 3433344
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChhHH
Q 038200 402 VSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDV 451 (523)
Q Consensus 402 ~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A 451 (523)
..|+..|.....-..=..+.+.+.+.++ ++.+ ..|+..+........|
T Consensus 81 kALlA~CL~~~~D~~Wr~~A~evle~~~-d~~a-~~Lv~~Ll~~~~~~~a 128 (160)
T PF09613_consen 81 KALLALCLYALGDPSWRRYADEVLESGA-DPDA-RALVRALLARADLEPA 128 (160)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHhcCC-ChHH-HHHHHHHHHhccccch
Confidence 4555555444333333444455555544 3332 2333444433333333
No 312
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=90.20 E-value=0.45 Score=24.93 Aligned_cols=24 Identities=13% Similarity=0.115 Sum_probs=18.4
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHH
Q 038200 433 SRYQFLLNVYAVAGQWEDVARVRE 456 (523)
Q Consensus 433 ~~~~~l~~~~~~~g~~~~A~~~~~ 456 (523)
.+...++.++...|++++|..+++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHh
Confidence 356677888888888888887765
No 313
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=90.13 E-value=2.2 Score=34.40 Aligned_cols=84 Identities=13% Similarity=-0.029 Sum_probs=49.6
Q ss_pred HHHHHHHHH---HHcCCChHHHHHHHHhCCCCCCCCCchHHHHHHHH-HHHHhcCCHHHHHHHHHHHhhcCCCChhhHHH
Q 038200 362 AHYWCMANL---YAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLL-SLCRFQGAVAMVERLAKSFVDMDPQDFSRYQF 437 (523)
Q Consensus 362 ~~~~~l~~~---~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 437 (523)
.+.+.|+.. -.+.++.+++..++..+.- ..|.......+- ..+...|++.+|.++++.+.+-.|..+..-..
T Consensus 8 ~iv~gLie~~~~al~~~~~~D~e~lL~ALrv----LRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kAL 83 (160)
T PF09613_consen 8 EIVGGLIEVLSVALRLGDPDDAEALLDALRV----LRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKAL 83 (160)
T ss_pred HHHHHHHHHHHHHHccCChHHHHHHHHHHHH----hCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHH
Confidence 344444443 3466777777777777763 455544333332 23667778888888888877766666544445
Q ss_pred HHHHHHhcCChh
Q 038200 438 LLNVYAVAGQWE 449 (523)
Q Consensus 438 l~~~~~~~g~~~ 449 (523)
++.++...|+.+
T Consensus 84 lA~CL~~~~D~~ 95 (160)
T PF09613_consen 84 LALCLYALGDPS 95 (160)
T ss_pred HHHHHHHcCChH
Confidence 555555555543
No 314
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=89.96 E-value=0.97 Score=25.32 Aligned_cols=27 Identities=11% Similarity=0.170 Sum_probs=17.1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHh
Q 038200 287 CWNAMILGHCIHGKPEEGIKLFTALVN 313 (523)
Q Consensus 287 ~~~~li~~~~~~g~~~~a~~~~~~m~~ 313 (523)
+|..+...|...|++++|+..|++.++
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 455666666666666666666666665
No 315
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.56 E-value=27 Score=35.88 Aligned_cols=170 Identities=13% Similarity=0.120 Sum_probs=97.0
Q ss_pred HHHHHccCCchHHHHHHHHHHHhCCCC---CchHHHHHHHHHHccCChHHHHHHHhhcCCCCcchHHHHHHHHHhcCCHH
Q 038200 94 FGSCAKTGCVERGGMCHGLALKNGVDF---ELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMS 170 (523)
Q Consensus 94 l~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 170 (523)
++-+.+.+.+++|+.+.+.... ..| -..+...+++.+...|++++|-...-.|...+..-|...+..+...++..
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~~--~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn~~~eWe~~V~~f~e~~~l~ 440 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASIG--NEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGNNAAEWELWVFKFAELDQLT 440 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhccC--CccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcchHHHHHHHHHHhccccccc
Confidence 3444555666777666554322 233 34567778888888888888888888888777777777777777776665
Q ss_pred HHHHHHhcCCC-CChhHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHcC
Q 038200 171 AAHELFDIMPE-RNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTS 249 (523)
Q Consensus 171 ~a~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 249 (523)
....++=.-+. -+...|..++..+.. .+. .-|.+.++. .+...|..+--.-+-..+ ..+.
T Consensus 441 ~Ia~~lPt~~~rL~p~vYemvLve~L~-~~~----~~F~e~i~~---Wp~~Lys~l~iisa~~~q----------~~q~- 501 (846)
T KOG2066|consen 441 DIAPYLPTGPPRLKPLVYEMVLVEFLA-SDV----KGFLELIKE---WPGHLYSVLTIISATEPQ----------IKQN- 501 (846)
T ss_pred hhhccCCCCCcccCchHHHHHHHHHHH-HHH----HHHHHHHHh---CChhhhhhhHHHhhcchH----------HHhh-
Confidence 54433322222 245567777776666 222 222223221 122233322211111111 1111
Q ss_pred CCCchHHHHHHhhhhhhcCChHHHHHHHHhcCCCCh
Q 038200 250 LKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNL 285 (523)
Q Consensus 250 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 285 (523)
.-+...-..|+..|...+++++|..++-....+++
T Consensus 502 -Se~~~L~e~La~LYl~d~~Y~~Al~~ylklk~~~v 536 (846)
T KOG2066|consen 502 -SESTALLEVLAHLYLYDNKYEKALPIYLKLQDKDV 536 (846)
T ss_pred -ccchhHHHHHHHHHHHccChHHHHHHHHhccChHH
Confidence 11223334488889999999999999988877544
No 316
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.55 E-value=1 Score=40.22 Aligned_cols=48 Identities=19% Similarity=0.323 Sum_probs=22.9
Q ss_pred CchHHHHHHHHHHHCCCCCCcccHHHHHHHHHccCCchHHHHHHHHHH
Q 038200 67 VPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLAL 114 (523)
Q Consensus 67 ~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 114 (523)
++++++.++..=.+.|+-||.++++.+|+.+.+.+++..|.++...|.
T Consensus 115 ~pq~~i~~l~npIqYGiF~dqf~~c~l~D~flk~~n~~~aa~vvt~~~ 162 (418)
T KOG4570|consen 115 DPQKAIYTLVNPIQYGIFPDQFTFCLLMDSFLKKENYKDAASVVTEVM 162 (418)
T ss_pred ChHHHHHHHhCcchhccccchhhHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 334444444444444444555555555555444444444444444443
No 317
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=89.30 E-value=1 Score=26.60 Aligned_cols=24 Identities=25% Similarity=0.403 Sum_probs=10.3
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHH
Q 038200 435 YQFLLNVYAVAGQWEDVARVRELM 458 (523)
Q Consensus 435 ~~~l~~~~~~~g~~~~A~~~~~~m 458 (523)
++.|+.+|...|++++|..++++.
T Consensus 5 ~~~la~~~~~~g~~~~A~~~~~~a 28 (42)
T PF13374_consen 5 LNNLANAYRAQGRYEEALELLEEA 28 (42)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhcchhhHHHHHH
Confidence 444444444444444444444433
No 318
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=89.22 E-value=2.4 Score=33.61 Aligned_cols=51 Identities=10% Similarity=0.075 Sum_probs=27.8
Q ss_pred cCCHHHHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 038200 411 QGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKR 461 (523)
Q Consensus 411 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 461 (523)
.++.+.++.++..+.-+.|+.+..-..-+..+...|+|++|..+++++.+.
T Consensus 23 ~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~ 73 (153)
T TIGR02561 23 SADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSS 73 (153)
T ss_pred cCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhcc
Confidence 455555555555555555555555555555555555555555555555443
No 319
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.19 E-value=14 Score=31.98 Aligned_cols=26 Identities=0% Similarity=-0.138 Sum_probs=18.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhcCCC
Q 038200 405 LSLCRFQGAVAMVERLAKSFVDMDPQ 430 (523)
Q Consensus 405 ~~~~~~~g~~~~a~~~~~~~~~~~p~ 430 (523)
...-...+++.+|.++|+++....-+
T Consensus 161 A~yaa~leqY~~Ai~iyeqva~~s~~ 186 (288)
T KOG1586|consen 161 AQYAAQLEQYSKAIDIYEQVARSSLD 186 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 33445668889999999888765443
No 320
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.02 E-value=7.9 Score=38.25 Aligned_cols=151 Identities=13% Similarity=0.028 Sum_probs=91.5
Q ss_pred HhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHH
Q 038200 164 VRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHG 243 (523)
Q Consensus 164 ~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 243 (523)
.-.|+++.|..++..+++ ..-+.++..+.+.|-.++|+++ .+|.... .....+.|+++.|.++..
T Consensus 597 vmrrd~~~a~~vLp~I~k---~~rt~va~Fle~~g~~e~AL~~---------s~D~d~r---Felal~lgrl~iA~~la~ 661 (794)
T KOG0276|consen 597 VLRRDLEVADGVLPTIPK---EIRTKVAHFLESQGMKEQALEL---------STDPDQR---FELALKLGRLDIAFDLAV 661 (794)
T ss_pred hhhccccccccccccCch---hhhhhHHhHhhhccchHhhhhc---------CCChhhh---hhhhhhcCcHHHHHHHHH
Confidence 345677777766666653 3334555666667766666653 2222211 122346677777776654
Q ss_pred HHHHcCCCCchHHHHHHhhhhhhcCChHHHHHHHHhcCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcCC
Q 038200 244 YTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISP 323 (523)
Q Consensus 244 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~p 323 (523)
+. .+..-|..|.++....+++..|.+.|.+... |..|+..+...|+.+....+-....+.| -
T Consensus 662 e~------~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d-----~~~LlLl~t~~g~~~~l~~la~~~~~~g-------~ 723 (794)
T KOG0276|consen 662 EA------NSEVKWRQLGDAALSAGELPLASECFLRARD-----LGSLLLLYTSSGNAEGLAVLASLAKKQG-------K 723 (794)
T ss_pred hh------cchHHHHHHHHHHhhcccchhHHHHHHhhcc-----hhhhhhhhhhcCChhHHHHHHHHHHhhc-------c
Confidence 33 2456677888888888888888888776543 5566667777777666666666555555 1
Q ss_pred CHHHHHHHHHHHhhcCcHHHHHHHHHHh
Q 038200 324 DEITFIGVICACVRAELLTEGRKYFRQM 351 (523)
Q Consensus 324 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 351 (523)
.|....+|...|+++++.+++..-
T Consensus 724 ----~N~AF~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 724 ----NNLAFLAYFLSGDYEECLELLIST 747 (794)
T ss_pred ----cchHHHHHHHcCCHHHHHHHHHhc
Confidence 222334455667777777776654
No 321
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=89.00 E-value=0.88 Score=26.90 Aligned_cols=28 Identities=18% Similarity=0.097 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 038200 398 SIMWVSLLSLCRFQGAVAMVERLAKSFV 425 (523)
Q Consensus 398 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 425 (523)
..+++.+...|...|++++|..+++++.
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al 29 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEAL 29 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHH
Confidence 3577889999999999999999999865
No 322
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=88.96 E-value=0.68 Score=26.21 Aligned_cols=31 Identities=23% Similarity=0.210 Sum_probs=18.7
Q ss_pred HHHHHhCCCCCchHHHHHHHHHHccCChHHHH
Q 038200 111 GLALKNGVDFELPVMNSLINMYGCFGAMDCAR 142 (523)
Q Consensus 111 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 142 (523)
++.++..+. +...|+.+..+|...|++++|+
T Consensus 3 ~kAie~~P~-n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 3 KKAIELNPN-NAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred HHHHHHCCC-CHHHHHHHHHHHHHCcCHHhhc
Confidence 344444433 5666777777777777666664
No 323
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=88.96 E-value=7.6 Score=33.02 Aligned_cols=28 Identities=18% Similarity=0.326 Sum_probs=17.3
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 038200 433 SRYQFLLNVYAVAGQWEDVARVRELMKK 460 (523)
Q Consensus 433 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 460 (523)
++|.-|+.-|...|..++|..+|+-...
T Consensus 238 EtyFYL~K~~l~~G~~~~A~~LfKLaia 265 (297)
T COG4785 238 ETYFYLGKYYLSLGDLDEATALFKLAVA 265 (297)
T ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence 3566666666666666666666665433
No 324
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=88.87 E-value=17 Score=32.58 Aligned_cols=60 Identities=13% Similarity=0.037 Sum_probs=52.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 038200 401 WVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKK 460 (523)
Q Consensus 401 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 460 (523)
+......|...|.+.+|.++.+++..++|-+...+..|+..|...|+--.|.+-++++.+
T Consensus 282 lgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya~ 341 (361)
T COG3947 282 LGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYAE 341 (361)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHHH
Confidence 344455789999999999999999999999999999999999999998888888887753
No 325
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=88.58 E-value=13 Score=31.07 Aligned_cols=85 Identities=6% Similarity=-0.019 Sum_probs=39.2
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCCCCcCCCHHHH-----HHHHHHHhhcCcHHHHHHHHHHhhHhcCCCCChHHHHHHH
Q 038200 294 GHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITF-----IGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMA 368 (523)
Q Consensus 294 ~~~~~g~~~~a~~~~~~m~~~~~~~~~~~p~~~~~-----~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 368 (523)
.+...|++++|...++..... |....+ ..|.+.....|.+++|+..++..... ++. ......-.
T Consensus 98 ~~ve~~~~d~A~aqL~~~l~~--------t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~-~w~--~~~~elrG 166 (207)
T COG2976 98 AEVEANNLDKAEAQLKQALAQ--------TKDENLKALAALRLARVQLQQKKADAALKTLDTIKEE-SWA--AIVAELRG 166 (207)
T ss_pred HHHhhccHHHHHHHHHHHHcc--------chhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccc-cHH--HHHHHHhh
Confidence 345555555555555555442 111122 12233444555555555555555442 111 11222334
Q ss_pred HHHHcCCChHHHHHHHHhCCC
Q 038200 369 NLYAGAELTEEAEEILRKMPE 389 (523)
Q Consensus 369 ~~~~~~g~~~~A~~~~~~~~~ 389 (523)
+.+...|+.++|..-|++..+
T Consensus 167 Dill~kg~k~~Ar~ay~kAl~ 187 (207)
T COG2976 167 DILLAKGDKQEARAAYEKALE 187 (207)
T ss_pred hHHHHcCchHHHHHHHHHHHH
Confidence 455555555555555555553
No 326
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.51 E-value=11 Score=37.37 Aligned_cols=150 Identities=15% Similarity=0.100 Sum_probs=94.2
Q ss_pred hcCChHHHHHHHHhcCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcCCCHHHHHHHHHHHhhcCcHHHHH
Q 038200 266 KCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGR 345 (523)
Q Consensus 266 ~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~ 345 (523)
-.|+++.|..++..+.++ ..+.++.-+.+.|..++|+++ .+|+.-- .....+.|+++.|.
T Consensus 598 mrrd~~~a~~vLp~I~k~---~rt~va~Fle~~g~~e~AL~~--------------s~D~d~r---Felal~lgrl~iA~ 657 (794)
T KOG0276|consen 598 LRRDLEVADGVLPTIPKE---IRTKVAHFLESQGMKEQALEL--------------STDPDQR---FELALKLGRLDIAF 657 (794)
T ss_pred hhccccccccccccCchh---hhhhHHhHhhhccchHhhhhc--------------CCChhhh---hhhhhhcCcHHHHH
Confidence 346666666666655532 233445555566766666653 3333211 12234568888887
Q ss_pred HHHHHhhHhcCCCCChHHHHHHHHHHHcCCChHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 038200 346 KYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFV 425 (523)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 425 (523)
++..+.. +..-|..|.++....|++..|.+.|.+... |..|+-.+...|+.+....+.....
T Consensus 658 ~la~e~~-------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d-----------~~~LlLl~t~~g~~~~l~~la~~~~ 719 (794)
T KOG0276|consen 658 DLAVEAN-------SEVKWRQLGDAALSAGELPLASECFLRARD-----------LGSLLLLYTSSGNAEGLAVLASLAK 719 (794)
T ss_pred HHHHhhc-------chHHHHHHHHHHhhcccchhHHHHHHhhcc-----------hhhhhhhhhhcCChhHHHHHHHHHH
Confidence 7766553 446688888888889999999888888772 3455666667777766655555555
Q ss_pred hcCCCChhhHHHHHHHHHhcCChhHHHHHHHHH
Q 038200 426 DMDPQDFSRYQFLLNVYAVAGQWEDVARVRELM 458 (523)
Q Consensus 426 ~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 458 (523)
+.+..+ .-..+|...|+++++.+++.+-
T Consensus 720 ~~g~~N-----~AF~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 720 KQGKNN-----LAFLAYFLSGDYEECLELLIST 747 (794)
T ss_pred hhcccc-----hHHHHHHHcCCHHHHHHHHHhc
Confidence 544433 2334567788888888877643
No 327
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=88.39 E-value=33 Score=35.36 Aligned_cols=18 Identities=28% Similarity=0.272 Sum_probs=14.2
Q ss_pred HHcCCChHHHHHHHHhCC
Q 038200 371 YAGAELTEEAEEILRKMP 388 (523)
Q Consensus 371 ~~~~g~~~~A~~~~~~~~ 388 (523)
+...|++++|++.++++.
T Consensus 515 ~~~~g~~~~AL~~i~~L~ 532 (613)
T PF04097_consen 515 LYHAGQYEQALDIIEKLD 532 (613)
T ss_dssp HHHTT-HHHHHHHHHHTT
T ss_pred HHHcCCHHHHHHHHHhCC
Confidence 467889999999998887
No 328
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.96 E-value=17 Score=31.47 Aligned_cols=101 Identities=16% Similarity=0.258 Sum_probs=54.0
Q ss_pred CcHHHHHHHHHHhhHhcCCCC-Ch---HHHHHHHHHHHcCCChHHHHHHHHhCCCCCCCCCchHH-----HHHHHHHHHH
Q 038200 339 ELLTEGRKYFRQMIDFYKIKP-NF---AHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESI-----MWVSLLSLCR 409 (523)
Q Consensus 339 ~~~~~a~~~~~~~~~~~~~~~-~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~-----~~~~l~~~~~ 409 (523)
.++++|+..|+..-+-|...- +. .++.-+...-+..+++.+|+++|+++.... ...+.. -|..-...|.
T Consensus 128 ~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s--~~n~LLKys~KdyflkAgLCh 205 (288)
T KOG1586|consen 128 QDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSS--LDNNLLKYSAKDYFLKAGLCH 205 (288)
T ss_pred HHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--ccchHHHhHHHHHHHHHHHHh
Confidence 455666666666554322211 11 222333334456788999999998877432 111111 1111112232
Q ss_pred -hcCCHHHHHHHHHHHhhcCCC--ChhhHHHHHHH
Q 038200 410 -FQGAVAMVERLAKSFVDMDPQ--DFSRYQFLLNV 441 (523)
Q Consensus 410 -~~g~~~~a~~~~~~~~~~~p~--~~~~~~~l~~~ 441 (523)
...+.-.+.+.+++..+++|. +..-+..|-..
T Consensus 206 l~~~D~v~a~~ALeky~~~dP~F~dsREckflk~L 240 (288)
T KOG1586|consen 206 LCKADEVNAQRALEKYQELDPAFTDSRECKFLKDL 240 (288)
T ss_pred HhcccHHHHHHHHHHHHhcCCcccccHHHHHHHHH
Confidence 337777888889999999996 33334444333
No 329
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=87.94 E-value=1.7 Score=27.57 Aligned_cols=33 Identities=12% Similarity=0.155 Sum_probs=25.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhcCCCChhhH
Q 038200 403 SLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRY 435 (523)
Q Consensus 403 ~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 435 (523)
.+.-++.+.|++++|.+..+.+++++|++..+-
T Consensus 6 ~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~ 38 (53)
T PF14853_consen 6 YLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQ 38 (53)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHH
Confidence 455678899999999999999999999876543
No 330
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.91 E-value=35 Score=35.12 Aligned_cols=67 Identities=13% Similarity=0.149 Sum_probs=33.8
Q ss_pred HHHHHHHhhcCcHHHHHHHHHHhhHhcCCCCChHHHHHHHHHHHcCCChHHHHHHHHhCCCCCCCCCchHHHHHHHHHHH
Q 038200 329 IGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLC 408 (523)
Q Consensus 329 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 408 (523)
...+..|.+.|-+++-.-++.+|-. ++.+|.-.--+.++.++|+++.++-- |...|..|+..+
T Consensus 638 ekA~eiC~q~~~~~E~VYlLgrmGn---------~k~AL~lII~el~die~AIefvKeq~--------D~eLWe~LI~~~ 700 (846)
T KOG2066|consen 638 EKALEICSQKNFYEELVYLLGRMGN---------AKEALKLIINELRDIEKAIEFVKEQD--------DSELWEDLINYS 700 (846)
T ss_pred HHHHHHHHhhCcHHHHHHHHHhhcc---------hHHHHHHHHHHhhCHHHHHHHHHhcC--------CHHHHHHHHHHh
Confidence 3444555555555655555555532 22223333334456666666554432 445666666655
Q ss_pred HhcC
Q 038200 409 RFQG 412 (523)
Q Consensus 409 ~~~g 412 (523)
...-
T Consensus 701 ldkP 704 (846)
T KOG2066|consen 701 LDKP 704 (846)
T ss_pred hcCc
Confidence 5443
No 331
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=87.65 E-value=3.7 Score=29.71 Aligned_cols=59 Identities=19% Similarity=0.220 Sum_probs=38.8
Q ss_pred HHHHHHHhCCCCCCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhhHHHHH
Q 038200 379 EAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLL 439 (523)
Q Consensus 379 ~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 439 (523)
++.+-++.+. +...-|++.+..+.+.+|++.+|+..|.++++-+...-.++...|..++
T Consensus 25 e~rr~mN~l~--~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~~~~~y~~~l 83 (103)
T cd00923 25 ELRRGLNNLF--GYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGAHKEIYPYIL 83 (103)
T ss_pred HHHHHHHHHh--ccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccCchhhHHHHH
Confidence 4444455554 3346788888888888888888888888888877643332334555443
No 332
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=87.31 E-value=48 Score=36.03 Aligned_cols=56 Identities=13% Similarity=-0.054 Sum_probs=30.0
Q ss_pred HHHHHhhcCcHHHHHHHHHHhhHhcCCCCChHHHHHHHHHHHcCCChHHHHHHHHhCC
Q 038200 331 VICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMP 388 (523)
Q Consensus 331 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 388 (523)
.+.+|...|++.+|+.+..++.. +-.--..+-..|+.-+...++.-+|-++..+..
T Consensus 971 Al~a~~~~~dWr~~l~~a~ql~~--~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~ 1026 (1265)
T KOG1920|consen 971 ALKAYKECGDWREALSLAAQLSE--GKDELVILAEELVSRLVEQRKHYEAAKILLEYL 1026 (1265)
T ss_pred HHHHHHHhccHHHHHHHHHhhcC--CHHHHHHHHHHHHHHHHHcccchhHHHHHHHHh
Confidence 34555556666666666665543 111112222445566666666666666666665
No 333
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=87.21 E-value=0.96 Score=24.99 Aligned_cols=28 Identities=18% Similarity=0.249 Sum_probs=23.9
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 038200 434 RYQFLLNVYAVAGQWEDVARVRELMKKR 461 (523)
Q Consensus 434 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 461 (523)
++..++.+|.+.|++++|.+.|+++.+.
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 4667888999999999999999998765
No 334
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=87.15 E-value=31 Score=33.59 Aligned_cols=57 Identities=9% Similarity=0.162 Sum_probs=28.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhcCCCChhhHHHHHHHHHhc--CChhHHHHHHHHHHh
Q 038200 404 LLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVA--GQWEDVARVRELMKK 460 (523)
Q Consensus 404 l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~--g~~~~A~~~~~~m~~ 460 (523)
++.-+.+.|-.++|...+..+..+.|.+...|..++..-..+ -+..-+..+|+.|..
T Consensus 466 ~l~~~~e~~~~~~ark~y~~l~~lpp~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~ 524 (568)
T KOG2396|consen 466 YLDWAYESGGYKKARKVYKSLQELPPFSLDLFRKMIQFEKEQESCNLANIREYYDRALR 524 (568)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhCCCccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHH
Confidence 344445555566666666666665555555555554432211 124445555555543
No 335
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=87.14 E-value=0.69 Score=37.10 Aligned_cols=53 Identities=11% Similarity=0.155 Sum_probs=28.6
Q ss_pred HHHHHhcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHH
Q 038200 191 ISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHG 243 (523)
Q Consensus 191 i~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 243 (523)
+..+.+.+.+.....+++.+...+...+....+.++..|++.++.+....+++
T Consensus 14 i~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~ 66 (143)
T PF00637_consen 14 ISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLK 66 (143)
T ss_dssp HHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTT
T ss_pred HHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcc
Confidence 44445555566666666666655444455555666666666655555554443
No 336
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=86.96 E-value=1.6 Score=24.29 Aligned_cols=29 Identities=21% Similarity=0.252 Sum_probs=25.8
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 038200 433 SRYQFLLNVYAVAGQWEDVARVRELMKKR 461 (523)
Q Consensus 433 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 461 (523)
.+|..++.+|...|++++|...|++..+.
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~ 30 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 46889999999999999999999988663
No 337
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=86.81 E-value=1.5 Score=24.12 Aligned_cols=29 Identities=10% Similarity=0.024 Sum_probs=22.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhcCCC
Q 038200 402 VSLLSLCRFQGAVAMVERLAKSFVDMDPQ 430 (523)
Q Consensus 402 ~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 430 (523)
..+..++...|+.++|.+.++.+++..|+
T Consensus 4 ~~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 4 YRLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 34556677788888888888888887775
No 338
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.78 E-value=9 Score=34.59 Aligned_cols=97 Identities=14% Similarity=0.259 Sum_probs=69.2
Q ss_pred CCCCchHHHHHHhhhhhhcCChHHHHHHHHhcCC-C--------ChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC
Q 038200 249 SLKPNIILDTALIDLYSKCQKVEVAQRVFDSMAD-R--------NLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGG 319 (523)
Q Consensus 249 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~--------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~ 319 (523)
|.+....+...++..-....+++.++.++-++.. + ...+|-.++ ..-+..+++.++..=+.-|
T Consensus 59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irll----lky~pq~~i~~l~npIqYG---- 130 (418)
T KOG4570|consen 59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLL----LKYDPQKAIYTLVNPIQYG---- 130 (418)
T ss_pred CCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHHH----HccChHHHHHHHhCcchhc----
Confidence 4444555555666666666788888888877754 2 222333332 2346678888888888888
Q ss_pred CcCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhHh
Q 038200 320 SISPDEITFIGVICACVRAELLTEGRKYFRQMIDF 354 (523)
Q Consensus 320 ~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 354 (523)
+-||..+++.+|..+.+.+++.+|..+.-.|...
T Consensus 131 -iF~dqf~~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 131 -IFPDQFTFCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred -cccchhhHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 8999999999999999999999888877776653
No 339
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=86.13 E-value=5.1 Score=34.06 Aligned_cols=54 Identities=11% Similarity=-0.053 Sum_probs=25.2
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcCCCHH-HHHHHHHHHhhcCcHHHHHHHHHH
Q 038200 290 AMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEI-TFIGVICACVRAELLTEGRKYFRQ 350 (523)
Q Consensus 290 ~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~ 350 (523)
..++.+.+.+...+++...++-++ .+|... +-..++..++-.|++++|..-++-
T Consensus 6 ~t~seLL~~~sL~dai~~a~~qVk-------akPtda~~RhflfqLlcvaGdw~kAl~Ql~l 60 (273)
T COG4455 6 DTISELLDDNSLQDAIGLARDQVK-------AKPTDAGGRHFLFQLLCVAGDWEKALAQLNL 60 (273)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHh-------cCCccccchhHHHHHHhhcchHHHHHHHHHH
Confidence 334445555555555555554444 444322 223334445555555555444443
No 340
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=86.05 E-value=5.4 Score=29.22 Aligned_cols=59 Identities=19% Similarity=0.227 Sum_probs=36.9
Q ss_pred HHHHHHHhCCCCCCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhhHHHHH
Q 038200 379 EAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLL 439 (523)
Q Consensus 379 ~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 439 (523)
+..+-++.+. +..+-|++.+..+.+.+|++.+++..|.++++-+...-.+....|..++
T Consensus 28 e~rrglN~l~--~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~~~~~Y~~~l 86 (108)
T PF02284_consen 28 ELRRGLNNLF--GYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGNKKEIYPYIL 86 (108)
T ss_dssp HHHHHHHHHT--TSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT-TTHHHHHH
T ss_pred HHHHHHHHHh--ccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccChHHHHHHHH
Confidence 3444445544 3347788888888889999999999999999888764443333565554
No 341
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=85.67 E-value=5.2 Score=38.21 Aligned_cols=124 Identities=10% Similarity=0.039 Sum_probs=79.9
Q ss_pred HHhcCChHHHHHHHHHHH-hCCCCCCCcCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhHhcCCCCChHHHHHHHHHHHc
Q 038200 295 HCIHGKPEEGIKLFTALV-NGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAG 373 (523)
Q Consensus 295 ~~~~g~~~~a~~~~~~m~-~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 373 (523)
-...|+...|-+-+.... ... -.|+.....+ ..+...|+++.+.+.+..... -+.....+..++++...+
T Consensus 299 ~~~~gd~~aas~~~~~~lr~~~-----~~p~~i~l~~--~i~~~lg~ye~~~~~~s~~~~--~~~s~~~~~~~~~r~~~~ 369 (831)
T PRK15180 299 QLADGDIIAASQQLFAALRNQQ-----QDPVLIQLRS--VIFSHLGYYEQAYQDISDVEK--IIGTTDSTLRCRLRSLHG 369 (831)
T ss_pred HhhccCHHHHHHHHHHHHHhCC-----CCchhhHHHH--HHHHHhhhHHHHHHHhhchhh--hhcCCchHHHHHHHhhhc
Confidence 345677666655444443 332 3444443333 345677889988888887766 455566778888888888
Q ss_pred CCChHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCC
Q 038200 374 AELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQ 430 (523)
Q Consensus 374 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 430 (523)
.|++++|...-..|... .++ +..+...........|-++++...++++..++|+
T Consensus 370 l~r~~~a~s~a~~~l~~--eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~ 423 (831)
T PRK15180 370 LARWREALSTAEMMLSN--EIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPE 423 (831)
T ss_pred hhhHHHHHHHHHHHhcc--ccC-ChhheeeecccHHHHhHHHHHHHHHHHHhccCCh
Confidence 99999999888888732 122 2222223333455567788888888888887765
No 342
>PRK10941 hypothetical protein; Provisional
Probab=85.28 E-value=6.1 Score=35.49 Aligned_cols=62 Identities=11% Similarity=0.049 Sum_probs=53.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 038200 400 MWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKR 461 (523)
Q Consensus 400 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 461 (523)
..+.+-.+|.+.++++.|.++.+.+..+.|+++.-+..-+-+|.+.|.+..|..=++...+.
T Consensus 183 ml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~ 244 (269)
T PRK10941 183 LLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQ 244 (269)
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHh
Confidence 34556667889999999999999999999999988888999999999999999888877665
No 343
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=85.15 E-value=14 Score=29.40 Aligned_cols=77 Identities=14% Similarity=0.181 Sum_probs=40.1
Q ss_pred HHHHHHHHhhccCCchhHHHHhccCC---------CCCcccHHHHHHHHHhCCC-chHHHHHHHHHHHCCCCCCcccHHH
Q 038200 23 WTINLLKHSADFGSPDYTVLVFKCIN---------NPGTFCVNAVIKAYSNSCV-PDQGVVFYLQMIKNGFMPNSYTFVS 92 (523)
Q Consensus 23 ~~~~l~~~~~~~g~~~~A~~~~~~~~---------~~~~~~~~~ll~~~~~~~~-~~~a~~~~~~m~~~~~~p~~~~~~~ 92 (523)
..+.++...+..+++.-.+.+++.+. ..+-.+|+.++.+..+... --.+..+|..|.+.+.+++..-|..
T Consensus 41 fiN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~ 120 (145)
T PF13762_consen 41 FINCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSC 120 (145)
T ss_pred HHHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 34444555455555555555555442 1234455566665544444 2345555555555555555555666
Q ss_pred HHHHHHc
Q 038200 93 LFGSCAK 99 (523)
Q Consensus 93 ll~~~~~ 99 (523)
++.+|.+
T Consensus 121 li~~~l~ 127 (145)
T PF13762_consen 121 LIKAALR 127 (145)
T ss_pred HHHHHHc
Confidence 6665544
No 344
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=85.02 E-value=4.4 Score=39.69 Aligned_cols=163 Identities=11% Similarity=0.162 Sum_probs=105.8
Q ss_pred hcCcHHHHHHHHHHhhHhcCCCC---------C---hHHHHHHHHHHHcCCChHHHHHHHHhC-------CCCC------
Q 038200 337 RAELLTEGRKYFRQMIDFYKIKP---------N---FAHYWCMANLYAGAELTEEAEEILRKM-------PEDN------ 391 (523)
Q Consensus 337 ~~~~~~~a~~~~~~~~~~~~~~~---------~---~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~~------ 391 (523)
....++++...|...... ..| + +.+...+...+...|+.+.|..++++. ....
T Consensus 250 hs~sYeqaq~~F~~av~~--~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg 327 (665)
T KOG2422|consen 250 HSNSYEQAQRDFYLAVIV--HDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSG 327 (665)
T ss_pred cchHHHHHHHHHHHHHhh--cCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccc
Confidence 445677788777777663 222 2 334445556677888887777665543 2110
Q ss_pred -----CCCCchHHHHHHH---HHHHHhcCCHHHHHHHHHHHhhcCCC-ChhhHHHHHHHHH-hcCChhHHHHHHHHHHh-
Q 038200 392 -----DNMSFESIMWVSL---LSLCRFQGAVAMVERLAKSFVDMDPQ-DFSRYQFLLNVYA-VAGQWEDVARVRELMKK- 460 (523)
Q Consensus 392 -----~~~~~~~~~~~~l---~~~~~~~g~~~~a~~~~~~~~~~~p~-~~~~~~~l~~~~~-~~g~~~~A~~~~~~m~~- 460 (523)
....-+...|.++ +....+.|=+..|.++.+.+.+++|. ||-....+++.|+ ++.+|.-.+++++..+.
T Consensus 328 ~cRL~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~ 407 (665)
T KOG2422|consen 328 NCRLPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENM 407 (665)
T ss_pred cccCcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhh
Confidence 1111223344444 33466778899999999999999998 9999999999986 78889999999998843
Q ss_pred CCCccCCceeEEEeCCeEEEEecCCC--CchHHHHHHHHHHhccc
Q 038200 461 RRMGRMPGCRLVDLKEVVEKLKVGHF--WRGGMKEEVNKMMECRQ 503 (523)
Q Consensus 461 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~ 503 (523)
..+...|...+.. ..+..|+..+. .++.+...+.+.++.-|
T Consensus 408 n~l~~~PN~~yS~--AlA~f~l~~~~~~~rqsa~~~l~qAl~~~P 450 (665)
T KOG2422|consen 408 NKLSQLPNFGYSL--ALARFFLRKNEEDDRQSALNALLQALKHHP 450 (665)
T ss_pred ccHhhcCCchHHH--HHHHHHHhcCChhhHHHHHHHHHHHHHhCc
Confidence 5566667642222 23334444442 35567777777777665
No 345
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=84.76 E-value=13 Score=27.17 Aligned_cols=87 Identities=11% Similarity=0.090 Sum_probs=60.1
Q ss_pred HHHHHHHHHHHHHcCCCCchHHHHHHhhhhhhcCChHHHHHHHHhcCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 038200 235 FNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNG 314 (523)
Q Consensus 235 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 314 (523)
.++|..|-+.+...+-. ...+--+-+..+...|++++|..+.+...-||...|.++-. .+.|..+++..-+.+|..+
T Consensus 21 HqEA~tIAdwL~~~~~~-~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce--~rlGl~s~l~~rl~rla~s 97 (115)
T TIGR02508 21 HQEANTIADWLHLKGES-EEAVQLIRLSSLMNRGDYQSALQLGNKLCYPDLEPWLALCE--WRLGLGSALESRLNRLAAS 97 (115)
T ss_pred HHHHHHHHHHHhcCCch-HHHHHHHHHHHHHccchHHHHHHhcCCCCCchHHHHHHHHH--HhhccHHHHHHHHHHHHhC
Confidence 45666666666554322 22222233456778899999999999999899999987755 4678888888888888887
Q ss_pred CCCCCCcCCCHHHHHH
Q 038200 315 TVAGGSISPDEITFIG 330 (523)
Q Consensus 315 ~~~~~~~~p~~~~~~~ 330 (523)
| .|....|..
T Consensus 98 g------~p~lq~Faa 107 (115)
T TIGR02508 98 G------DPRLQTFVA 107 (115)
T ss_pred C------CHHHHHHHH
Confidence 6 566555543
No 346
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=84.48 E-value=26 Score=31.29 Aligned_cols=86 Identities=10% Similarity=0.132 Sum_probs=40.5
Q ss_pred HHHHHcCCChHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCC-ChhhHHHHHHHHHh--
Q 038200 368 ANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQ-DFSRYQFLLNVYAV-- 444 (523)
Q Consensus 368 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~-~~~~~~~l~~~~~~-- 444 (523)
|.+++..+++.+++..+-+--+....++|...-.-.+ .|.+.|......++...-....-+ +..-|..++..|..
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCIL--LysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~V 167 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCIL--LYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHV 167 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHH--HHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHH
Confidence 4556666666666555433322222244443332222 255566665555555544432111 12235555544433
Q ss_pred ---cCChhHHHHHH
Q 038200 445 ---AGQWEDVARVR 455 (523)
Q Consensus 445 ---~g~~~~A~~~~ 455 (523)
.|.++||.++.
T Consensus 168 LlPLG~~~eAeelv 181 (309)
T PF07163_consen 168 LLPLGHFSEAEELV 181 (309)
T ss_pred HhccccHHHHHHHH
Confidence 36666666654
No 347
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=83.52 E-value=0.94 Score=41.06 Aligned_cols=87 Identities=17% Similarity=0.139 Sum_probs=39.4
Q ss_pred CCChHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChhHHHH
Q 038200 374 AELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVAR 453 (523)
Q Consensus 374 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 453 (523)
.|.+++|++.|...++. -++....+..-..++.+.+....|++-+..+++++|++..-|-.-..+....|+|++|..
T Consensus 127 ~G~~~~ai~~~t~ai~l---np~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~ 203 (377)
T KOG1308|consen 127 DGEFDTAIELFTSAIEL---NPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAH 203 (377)
T ss_pred Ccchhhhhccccccccc---CCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHH
Confidence 34444555444444432 122233333333344444444555555555555555444444444444444455555555
Q ss_pred HHHHHHhCCC
Q 038200 454 VRELMKKRRM 463 (523)
Q Consensus 454 ~~~~m~~~~~ 463 (523)
.+....+.++
T Consensus 204 dl~~a~kld~ 213 (377)
T KOG1308|consen 204 DLALACKLDY 213 (377)
T ss_pred HHHHHHhccc
Confidence 5544444444
No 348
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=83.09 E-value=61 Score=33.50 Aligned_cols=163 Identities=13% Similarity=0.114 Sum_probs=76.0
Q ss_pred HHHHHHHHHHHh---cCChHHHHHHHHHHHhCCCCCCCcCCCH-HHHHHHH-HHHhhcCcHHHHH-----------HHHH
Q 038200 286 VCWNAMILGHCI---HGKPEEGIKLFTALVNGTVAGGSISPDE-ITFIGVI-CACVRAELLTEGR-----------KYFR 349 (523)
Q Consensus 286 ~~~~~li~~~~~---~g~~~~a~~~~~~m~~~~~~~~~~~p~~-~~~~~ll-~~~~~~~~~~~a~-----------~~~~ 349 (523)
.-+..||..|++ ..+..+|+++|--+.... .|+. ..+...+ ......++++.-+ -+++
T Consensus 325 ln~arLI~~Y~~~F~~td~~~Al~Y~~li~~~~------~~~~~~l~~~~l~eLvletref~~LLG~i~~dG~r~~G~i~ 398 (613)
T PF04097_consen 325 LNFARLIGQYTRSFEITDPREALQYLYLICLFK------DPEQRNLFHECLRELVLETREFDLLLGDINPDGSRTPGLIE 398 (613)
T ss_dssp --HHHHHHHHHHTTTTT-HHHHHHHHHGGGGS-------SCCHHHHHHHHHHHHHHHH--HHHHHEEE-TTS-EEE-HHH
T ss_pred cCHHHHHHHHHHHHhccCHHHHHHHHHHHHHcC------CchHHHHHHHHHHHHHHccCCHHHHCCCCCCCCccccceee
Confidence 456777777775 457788888887776643 1322 2222222 2222333222111 1222
Q ss_pred HhhHhcCCCC-ChHH---HHHHHHHHHcCCChHHHHHHHHhCCCCCCCCCchHHHHHHHHHH-HHhcCC-----------
Q 038200 350 QMIDFYKIKP-NFAH---YWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSL-CRFQGA----------- 413 (523)
Q Consensus 350 ~~~~~~~~~~-~~~~---~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~----------- 413 (523)
+-.+..++.. .... ......-+...|++++|..+|.-+.+ ...-..+.+.++.- ......
T Consensus 399 ~~~~Li~~~~~~~~~~~i~~~~A~~~e~~g~~~dAi~Ly~La~~----~d~vl~lln~~Ls~~l~~~~~~~~~~s~~~~l 474 (613)
T PF04097_consen 399 RRLSLIKFDDDEDFLREIIEQAAREAEERGRFEDAILLYHLAEE----YDKVLSLLNRLLSQVLSQPSSSSLSDSERERL 474 (613)
T ss_dssp HTGGGGT-SSSSHHHHHHHHHHHHHHHHCT-HHHHHHHHHHTT-----HHHHHHHHHHHHHHHHHCSSTSSSSSTTTTSH
T ss_pred ccccccCCCCcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHhh----HHHHHHHHHHHHHHHHcCccccccccchhhhH
Confidence 2111111222 2222 22334456678999999999988873 22223344444443 222222
Q ss_pred HHHHHHHHHHHhh-------cCCCChhhHHHHHHH-----HHhcCChhHHHHHHHHH
Q 038200 414 VAMVERLAKSFVD-------MDPQDFSRYQFLLNV-----YAVAGQWEDVARVRELM 458 (523)
Q Consensus 414 ~~~a~~~~~~~~~-------~~p~~~~~~~~l~~~-----~~~~g~~~~A~~~~~~m 458 (523)
...|..+.+.... ..+....++..|... +...|+|++|++.++++
T Consensus 475 ~~la~~i~~~y~~~~~~~~~~~~~~~~t~~~Ll~L~~ff~~~~~g~~~~AL~~i~~L 531 (613)
T PF04097_consen 475 IELAKEILERYKSNPHISSKVSRKNRETFQLLLDLAEFFDLYHAGQYEQALDIIEKL 531 (613)
T ss_dssp HHHHHHHHHHHTTSHHHHTTS-HHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhCcchHhhccHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhC
Confidence 3445555444433 122233455544433 56789999998888765
No 349
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=83.07 E-value=5.5 Score=28.82 Aligned_cols=43 Identities=16% Similarity=0.245 Sum_probs=28.8
Q ss_pred HHHHHHhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 038200 419 RLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKR 461 (523)
Q Consensus 419 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 461 (523)
..++..++.+|+|...-..++..+...|++++|++.+-.+.+.
T Consensus 9 ~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~ 51 (90)
T PF14561_consen 9 AALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRR 51 (90)
T ss_dssp HHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 3445555677777777777777777777777777777777554
No 350
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=82.97 E-value=33 Score=30.36 Aligned_cols=128 Identities=11% Similarity=0.047 Sum_probs=80.0
Q ss_pred hHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHhcCCHH-HHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChhHHHHHH
Q 038200 377 TEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVA-MVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVR 455 (523)
Q Consensus 377 ~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~-~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 455 (523)
..+-++.+.++.+. .+.+-.+|..--......|+.. .-+++.+.++..+..+..+|..--.++..-+.|+.-+.+.
T Consensus 94 L~~El~~l~eI~e~---npKNYQvWHHRr~ive~l~d~s~rELef~~~~l~~DaKNYHaWshRqW~~r~F~~~~~EL~y~ 170 (318)
T KOG0530|consen 94 LNKELEYLDEIIED---NPKNYQVWHHRRVIVELLGDPSFRELEFTKLMLDDDAKNYHAWSHRQWVLRFFKDYEDELAYA 170 (318)
T ss_pred HHHHHHHHHHHHHh---CccchhHHHHHHHHHHHhcCcccchHHHHHHHHhccccchhhhHHHHHHHHHHhhHHHHHHHH
Confidence 44555566665543 2334445444433344445555 5567777777777778888888888888888899999999
Q ss_pred HHHHhCCCccCCcee--EEEeCCeEEEEecCC-CCchHHHHHHHHHHhcccCCccccc
Q 038200 456 ELMKKRRMGRMPGCR--LVDLKEVVEKLKVGH-FWRGGMKEEVNKMMECRQSRSLATV 510 (523)
Q Consensus 456 ~~m~~~~~~~~~~~~--~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~ 510 (523)
.+|.+..+..++... ++.+.+. +...+ ...+.-+.-..+.++..|+|.-+-+
T Consensus 171 ~~Lle~Di~NNSAWN~Ryfvi~~~---~~~~~~~~le~El~yt~~~I~~vP~NeSaWn 225 (318)
T KOG0530|consen 171 DELLEEDIRNNSAWNQRYFVITNT---KGVISKAELERELNYTKDKILLVPNNESAWN 225 (318)
T ss_pred HHHHHHhhhccchhheeeEEEEec---cCCccHHHHHHHHHHHHHHHHhCCCCccHHH
Confidence 999888887777641 1111110 11111 2344456666678888888877765
No 351
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=82.61 E-value=21 Score=27.90 Aligned_cols=73 Identities=12% Similarity=0.025 Sum_probs=52.0
Q ss_pred CCChHHHHHHHHHHHcCCCh---HHHHHHHHhCCCCCCCCCch--HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCh
Q 038200 358 KPNFAHYWCMANLYAGAELT---EEAEEILRKMPEDNDNMSFE--SIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDF 432 (523)
Q Consensus 358 ~~~~~~~~~l~~~~~~~g~~---~~A~~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~ 432 (523)
.++..+--.+..++.++.+. .+-+.+++++.+. -.|+ ..-..-|.-++.+.++++++.++.+.+++.+|++.
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~---~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~ 105 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKS---AHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNR 105 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhh---cCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcH
Confidence 45666666677788777654 4566788888742 1232 33334455578999999999999999999999876
Q ss_pred h
Q 038200 433 S 433 (523)
Q Consensus 433 ~ 433 (523)
.
T Consensus 106 Q 106 (149)
T KOG3364|consen 106 Q 106 (149)
T ss_pred H
Confidence 4
No 352
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=82.33 E-value=9 Score=32.34 Aligned_cols=75 Identities=16% Similarity=0.117 Sum_probs=48.5
Q ss_pred HHHHHHHHHhhHhcCCCCChHHHHHHHHHHHcCCChHHHHHHHHhCCCCCCCC-CchHHHHHHHHHHHHhcCCHHHHH
Q 038200 342 TEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNM-SFESIMWVSLLSLCRFQGAVAMVE 418 (523)
Q Consensus 342 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~a~ 418 (523)
+.|.+.|-.+... +.--++.....|...|. ..+.+++..++.+..+....- .+|+..+.+|+..+.+.|+++.|-
T Consensus 123 ~~A~~~fL~~E~~-~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 123 QEALRRFLQLEGT-PELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred HHHHHHHHHHcCC-CCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 4566666666554 44456666666666665 456777777777665543333 667777788888888888777663
No 353
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=81.88 E-value=3.6 Score=21.75 Aligned_cols=25 Identities=12% Similarity=0.065 Sum_probs=10.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhcCC
Q 038200 405 LSLCRFQGAVAMVERLAKSFVDMDP 429 (523)
Q Consensus 405 ~~~~~~~g~~~~a~~~~~~~~~~~p 429 (523)
...+...|+++.|...++..++..|
T Consensus 8 a~~~~~~~~~~~a~~~~~~~~~~~~ 32 (34)
T smart00028 8 GNAYLKLGDYDEALEYYEKALELDP 32 (34)
T ss_pred HHHHHHHhhHHHHHHHHHHHHccCC
Confidence 3334444444444444444444333
No 354
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=81.86 E-value=8 Score=27.46 Aligned_cols=64 Identities=9% Similarity=0.046 Sum_probs=37.5
Q ss_pred hHHHHHHHHhCCCCCChhHHHHHHHHhhccCCchhHHHHhccCCCCCcccHHHHHHHHHhCCCchHH
Q 038200 5 LQIQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSNSCVPDQG 71 (523)
Q Consensus 5 ~~i~~~~~~~g~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a 71 (523)
..|++.+...|+- +......+-..--..|+.+.|++++..++ +....|...+.++...|.-.-|
T Consensus 22 ~~v~d~ll~~~il--T~~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~~~LA 85 (88)
T cd08819 22 RDVCDKCLEQGLL--TEEDRNRIEAATENHGNESGARELLKRIV-QKEGWFSKFLQALRETEHHELA 85 (88)
T ss_pred HHHHHHHHhcCCC--CHHHHHHHHHhccccCcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCchhhh
Confidence 4566666666655 34444443333335566777777777766 6666666667766666654444
No 355
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=81.68 E-value=28 Score=28.64 Aligned_cols=132 Identities=11% Similarity=0.060 Sum_probs=84.5
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhHhcCCCCChH-HHH
Q 038200 287 CWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFA-HYW 365 (523)
Q Consensus 287 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~ 365 (523)
.|..-++ +++.+..++|+.-|..+.+.|.. --|- ...........+.|+...|...|+++-.. .-.|-.. -..
T Consensus 61 ~flaAL~-lA~~~k~d~Alaaf~~lektg~g---~Ypv-LA~mr~at~~a~kgdta~AV~aFdeia~d-t~~P~~~rd~A 134 (221)
T COG4649 61 AFLAALK-LAQENKTDDALAAFTDLEKTGYG---SYPV-LARMRAATLLAQKGDTAAAVAAFDEIAAD-TSIPQIGRDLA 134 (221)
T ss_pred HHHHHHH-HHHcCCchHHHHHHHHHHhcCCC---cchH-HHHHHHHHHHhhcccHHHHHHHHHHHhcc-CCCcchhhHHH
Confidence 3443333 46778889999999999887711 1111 11222334466789999999999998775 3333221 111
Q ss_pred H--HHHHHHcCCChHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 038200 366 C--MANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVD 426 (523)
Q Consensus 366 ~--l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 426 (523)
. -...+...|.++....-++-+... +.+.-...-..|.-+-.+.|++..|...|.++..
T Consensus 135 Rlraa~lLvD~gsy~dV~srvepLa~d--~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 135 RLRAAYLLVDNGSYDDVSSRVEPLAGD--GNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHHHHHHhccccHHHHHHHhhhccCC--CChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 1 223456789999888888877732 2233344445566677888999999999998876
No 356
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=80.90 E-value=7.4 Score=33.66 Aligned_cols=52 Identities=13% Similarity=0.066 Sum_probs=27.7
Q ss_pred HHHhcCCHHHHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHH
Q 038200 407 LCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELM 458 (523)
Q Consensus 407 ~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 458 (523)
.+.+..+++.+..--++++++.|+.......|+..+.....+++|+..+.+.
T Consensus 53 chlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~eaI~~Lqra 104 (284)
T KOG4642|consen 53 CHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDEAIKVLQRA 104 (284)
T ss_pred HHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccHHHHHHHHH
Confidence 3344455555555555555555555555555555555555555555555544
No 357
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=80.70 E-value=93 Score=34.02 Aligned_cols=92 Identities=5% Similarity=-0.036 Sum_probs=42.6
Q ss_pred chHHHHHHhhhhhhcCChHHHH-HHHHhcCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcCCCHHHHHHH
Q 038200 253 NIILDTALIDLYSKCQKVEVAQ-RVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGV 331 (523)
Q Consensus 253 ~~~~~~~l~~~~~~~~~~~~a~-~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~l 331 (523)
+..+-...+.++...|..+.+. .+...+..++...-...+.++...+. .++...+..+.. .|+...-...
T Consensus 788 d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~-~~a~~~L~~~L~--------D~~~~VR~~A 858 (897)
T PRK13800 788 DPLVRAAALAALAELGCPPDDVAAATAALRASAWQVRQGAARALAGAAA-DVAVPALVEALT--------DPHLDVRKAA 858 (897)
T ss_pred CHHHHHHHHHHHHhcCCcchhHHHHHHHhcCCChHHHHHHHHHHHhccc-cchHHHHHHHhc--------CCCHHHHHHH
Confidence 4555555555555555544332 22333334454455555555555544 234444444443 2444444445
Q ss_pred HHHHhhcCcHHHHHHHHHHhhH
Q 038200 332 ICACVRAELLTEGRKYFRQMID 353 (523)
Q Consensus 332 l~~~~~~~~~~~a~~~~~~~~~ 353 (523)
+.++.+......+...+..+.+
T Consensus 859 ~~aL~~~~~~~~a~~~L~~al~ 880 (897)
T PRK13800 859 VLALTRWPGDPAARDALTTALT 880 (897)
T ss_pred HHHHhccCCCHHHHHHHHHHHh
Confidence 5555554333344444444444
No 358
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=80.53 E-value=41 Score=29.82 Aligned_cols=201 Identities=9% Similarity=0.058 Sum_probs=91.5
Q ss_pred CCCcccHHHHHHH-HHhCCCchHHHHHHHHHHHCCCCCCcc---cHHHHHHHHHccCCchHHHHHHHHHHHh---CC--C
Q 038200 49 NPGTFCVNAVIKA-YSNSCVPDQGVVFYLQMIKNGFMPNSY---TFVSLFGSCAKTGCVERGGMCHGLALKN---GV--D 119 (523)
Q Consensus 49 ~~~~~~~~~ll~~-~~~~~~~~~a~~~~~~m~~~~~~p~~~---~~~~ll~~~~~~~~~~~a~~~~~~~~~~---~~--~ 119 (523)
+||+..-|..-.+ -.+...+++|+.-|++.++..-.--.. ....++....+.+++++....+.+++.. .+ .
T Consensus 23 EpdVDlENQYYnsK~l~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrN 102 (440)
T KOG1464|consen 23 EPDVDLENQYYNSKGLKEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRN 102 (440)
T ss_pred CCCcchHhhhhccccccccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhcc
Confidence 4555543332221 123346677777777776642111111 2334555566666776666666665431 11 1
Q ss_pred CCchHHHHHHHHHHccCChHHHHHHHhhcCCCCcchHHHHHHHHHhcCCHHHHHHHHhcCCCCChh----HHHHHHHHHH
Q 038200 120 FELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVV----SWNIMISGYS 195 (523)
Q Consensus 120 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~----~~~~li~~~~ 195 (523)
.+..+.|++++.-..+.+.+.-..+++. .+..++..+ +.. |-.-|...|.
T Consensus 103 ySEKsIN~IlDyiStS~~m~LLQ~FYeT------------------------TL~ALkdAK--NeRLWFKTNtKLgkl~f 156 (440)
T KOG1464|consen 103 YSEKSINSILDYISTSKNMDLLQEFYET------------------------TLDALKDAK--NERLWFKTNTKLGKLYF 156 (440)
T ss_pred ccHHHHHHHHHHHhhhhhhHHHHHHHHH------------------------HHHHHHhhh--cceeeeeccchHhhhhe
Confidence 1233444444444433333333222221 111111111 111 1223455556
Q ss_pred hcCCchHHHHHHHHHHHCCCC----CC-------HHHHHHHHHHHhccccHHHHHHHHHHHHHcC-CCCchHHHHHH---
Q 038200 196 KSGNPGCSLKLFREMMKSGFR----GN-------DKTMASVLTACGRSARFNEGRSVHGYTVRTS-LKPNIILDTAL--- 260 (523)
Q Consensus 196 ~~~~~~~a~~~~~~m~~~~~~----p~-------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l--- 260 (523)
..+.+.+..++++++.+..-. .| ...|..-+..|....+-.+-..+|++..... --|.+.+...+
T Consensus 157 d~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIREC 236 (440)
T KOG1464|consen 157 DRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIREC 236 (440)
T ss_pred eHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHc
Confidence 666666666666665432111 01 1345555666666666666666666655431 12333333222
Q ss_pred -hhhhhhcCChHHHHH
Q 038200 261 -IDLYSKCQKVEVAQR 275 (523)
Q Consensus 261 -~~~~~~~~~~~~a~~ 275 (523)
..++.+.|++++|..
T Consensus 237 GGKMHlreg~fe~AhT 252 (440)
T KOG1464|consen 237 GGKMHLREGEFEKAHT 252 (440)
T ss_pred CCccccccchHHHHHh
Confidence 234455667766643
No 359
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=79.06 E-value=76 Score=33.91 Aligned_cols=28 Identities=21% Similarity=0.457 Sum_probs=23.7
Q ss_pred HHHHHHHHHHhcCCchHHHHHHHHHHHC
Q 038200 186 SWNIMISGYSKSGNPGCSLKLFREMMKS 213 (523)
Q Consensus 186 ~~~~li~~~~~~~~~~~a~~~~~~m~~~ 213 (523)
-|..|+..|...|..++|+++|.+..+.
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d~ 533 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVDE 533 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhcc
Confidence 4788888999999999999999888763
No 360
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=78.71 E-value=4.4 Score=24.55 Aligned_cols=26 Identities=19% Similarity=0.174 Sum_probs=21.7
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhC
Q 038200 436 QFLLNVYAVAGQWEDVARVRELMKKR 461 (523)
Q Consensus 436 ~~l~~~~~~~g~~~~A~~~~~~m~~~ 461 (523)
..|+.+|...|+.+.|.++++++...
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~~ 28 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIEE 28 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHHc
Confidence 35788999999999999999988754
No 361
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=78.46 E-value=1e+02 Score=33.07 Aligned_cols=64 Identities=8% Similarity=0.057 Sum_probs=39.3
Q ss_pred ccHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCC---cccHHHHHHHHHccCCc--hHHHHHHHHHHHh
Q 038200 53 FCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPN---SYTFVSLFGSCAKTGCV--ERGGMCHGLALKN 116 (523)
Q Consensus 53 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~---~~~~~~ll~~~~~~~~~--~~a~~~~~~~~~~ 116 (523)
.-|..|+..|...|..++|+++|.+.....-.-| ...+-.++..+...+.. +.+.++-++..+.
T Consensus 505 ~~y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~ 573 (877)
T KOG2063|consen 505 KKYRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNK 573 (877)
T ss_pred ccHHHHHHHHHhccchHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhcc
Confidence 3588899999999999999999999886320011 11233345554444444 5555555555444
No 362
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=77.64 E-value=5.8 Score=32.70 Aligned_cols=33 Identities=12% Similarity=0.146 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHhhcCCCChhhHHHHHHHHHhcC
Q 038200 414 VAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAG 446 (523)
Q Consensus 414 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 446 (523)
+++|..-|+.++.++|+...++..++.+|...+
T Consensus 51 iedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A 83 (186)
T PF06552_consen 51 IEDAISKFEEALKINPNKHDALWCLGNAYTSLA 83 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHH
Confidence 344555555556666666666666666665544
No 363
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=77.41 E-value=1.2e+02 Score=33.29 Aligned_cols=20 Identities=10% Similarity=-0.077 Sum_probs=9.0
Q ss_pred CCCCcchHHHHHHHHHhcCC
Q 038200 149 SPRDLISWNSIVSGHVRSGD 168 (523)
Q Consensus 149 ~~~~~~~~~~ll~~~~~~~~ 168 (523)
..+|...-...+..+.+.+.
T Consensus 631 ~D~d~~VR~~Av~~L~~~~~ 650 (897)
T PRK13800 631 ADPDPGVRRTAVAVLTETTP 650 (897)
T ss_pred cCCCHHHHHHHHHHHhhhcc
Confidence 34444444444444444444
No 364
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=77.24 E-value=1.2e+02 Score=33.31 Aligned_cols=116 Identities=13% Similarity=0.071 Sum_probs=68.4
Q ss_pred CCCHHHHHHHHH----HHhhcCcHHHHHHHHHHhhHhcCCCCChHHHHHHHHHHHcCCChHHHHHHHHhCCCCCCCCCch
Q 038200 322 SPDEITFIGVIC----ACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFE 397 (523)
Q Consensus 322 ~p~~~~~~~ll~----~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 397 (523)
.|+...+..+.. -+.....+++|.-.|+..-+ ..--+.+|..+|+|.+|+.+..++. ..-|
T Consensus 932 ~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gk----------lekAl~a~~~~~dWr~~l~~a~ql~-----~~~d 996 (1265)
T KOG1920|consen 932 KPDSEKQKVIYEAYADHLREELMSDEAALMYERCGK----------LEKALKAYKECGDWREALSLAAQLS-----EGKD 996 (1265)
T ss_pred ccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhcc----------HHHHHHHHHHhccHHHHHHHHHhhc-----CCHH
Confidence 455544443333 33345556666555555432 1123566777778888877777776 2333
Q ss_pred HHH--HHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHH
Q 038200 398 SIM--WVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMK 459 (523)
Q Consensus 398 ~~~--~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 459 (523)
... -..|..-+..+++.-+|-.+.....+ -...-...|+++..|++|..+...-.
T Consensus 997 e~~~~a~~L~s~L~e~~kh~eAa~il~e~~s-------d~~~av~ll~ka~~~~eAlrva~~~~ 1053 (1265)
T KOG1920|consen 997 ELVILAEELVSRLVEQRKHYEAAKILLEYLS-------DPEEAVALLCKAKEWEEALRVASKAK 1053 (1265)
T ss_pred HHHHHHHHHHHHHHHcccchhHHHHHHHHhc-------CHHHHHHHHhhHhHHHHHHHHHHhcc
Confidence 322 25566677788888887777766542 12233456677788999988766543
No 365
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=77.18 E-value=8.5 Score=27.36 Aligned_cols=63 Identities=16% Similarity=0.160 Sum_probs=42.1
Q ss_pred HhHHHHHHHHhCCCCCChhHHHHHHHHhhccCCchhHHHHhccCCCCCcccHHHHHHHHHhCCCchHH
Q 038200 4 LLQIQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSNSCVPDQG 71 (523)
Q Consensus 4 ~~~i~~~~~~~g~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a 71 (523)
...|++++++.|+- +... .-..-+...+.+.|.++++.++.+...+|.....++-..|...-|
T Consensus 18 ~~~v~~~L~~~~Vl--t~~~---~e~I~~~~tr~~q~~~LLd~L~~RG~~AF~~F~~aL~~~~~~~LA 80 (84)
T cd08326 18 PKYLWDHLLSRGVF--TPDM---IEEIQAAGSRRDQARQLLIDLETRGKQAFPAFLSALRETGQTDLA 80 (84)
T ss_pred HHHHHHHHHhcCCC--CHHH---HHHHHcCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCchHHH
Confidence 34577778877776 3332 223334556678888888888888888888888887776654433
No 366
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=77.14 E-value=6.7 Score=38.55 Aligned_cols=99 Identities=13% Similarity=0.020 Sum_probs=57.0
Q ss_pred cCcHHHHHHHHHHhhHhcCCCC--ChHHHHHHHHHHHcCCChHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHhcCCHH
Q 038200 338 AELLTEGRKYFRQMIDFYKIKP--NFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVA 415 (523)
Q Consensus 338 ~~~~~~a~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 415 (523)
.|+...|...+..+.. ..| .....-.|...+.+.|..-+|..++.+.+.. ....+.++..+..++....+++
T Consensus 620 ~gn~~~a~~cl~~a~~---~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~---~~sepl~~~~~g~~~l~l~~i~ 693 (886)
T KOG4507|consen 620 VGNSTFAIACLQRALN---LAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAI---NSSEPLTFLSLGNAYLALKNIS 693 (886)
T ss_pred cCCcHHHHHHHHHHhc---cChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhh---cccCchHHHhcchhHHHHhhhH
Confidence 4555666665555543 222 1222334555556666666666666655532 1333455666666677777777
Q ss_pred HHHHHHHHHhhcCCCChhhHHHHHHHH
Q 038200 416 MVERLAKSFVDMDPQDFSRYQFLLNVY 442 (523)
Q Consensus 416 ~a~~~~~~~~~~~p~~~~~~~~l~~~~ 442 (523)
.|.+.++.+.+.+|+++.+-+.|..+-
T Consensus 694 ~a~~~~~~a~~~~~~~~~~~~~l~~i~ 720 (886)
T KOG4507|consen 694 GALEAFRQALKLTTKCPECENSLKLIR 720 (886)
T ss_pred HHHHHHHHHHhcCCCChhhHHHHHHHH
Confidence 777777777777777766666555443
No 367
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=77.11 E-value=90 Score=31.82 Aligned_cols=174 Identities=11% Similarity=0.045 Sum_probs=82.4
Q ss_pred chHHHHHHHHHHHCCCCCCHHHHHHHHH----H-HhccccHHHHHHHHHHHHH-------cCCCCchHHHHHHhhhhhhc
Q 038200 200 PGCSLKLFREMMKSGFRGNDKTMASVLT----A-CGRSARFNEGRSVHGYTVR-------TSLKPNIILDTALIDLYSKC 267 (523)
Q Consensus 200 ~~~a~~~~~~m~~~~~~p~~~~~~~ll~----~-~~~~~~~~~a~~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~ 267 (523)
...|..+++...+.|. ...-..+.. + .....+.+.|..+++.+.+ .+ .......+..+|.+.
T Consensus 228 ~~~a~~~~~~~a~~g~---~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g 301 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGH---SEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQG 301 (552)
T ss_pred hhHHHHHHHHHHhhcc---hHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcC
Confidence 3456666666666552 222111211 1 3345667777777776655 33 222334444555443
Q ss_pred C-----ChHHHHHHHHhcCC-CChHHHHHHHHHHHh---cCChHHHHHHHHHHHhCCCCCCCcCCCHHHHHHHHHHHh--
Q 038200 268 Q-----KVEVAQRVFDSMAD-RNLVCWNAMILGHCI---HGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACV-- 336 (523)
Q Consensus 268 ~-----~~~~a~~~~~~~~~-~~~~~~~~li~~~~~---~g~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~ll~~~~-- 336 (523)
. +.+.|..++....+ .++..--.+...|.. ..+...|.++|......| .++..-+..++....
T Consensus 302 ~~~~~~d~~~A~~~~~~aA~~g~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G------~~~A~~~la~~y~~G~g 375 (552)
T KOG1550|consen 302 LGVEKIDYEKALKLYTKAAELGNPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAG------HILAIYRLALCYELGLG 375 (552)
T ss_pred CCCccccHHHHHHHHHHHHhcCCchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcC------ChHHHHHHHHHHHhCCC
Confidence 2 45667777766544 222222222222222 235667777777777766 222222222221111
Q ss_pred hcCcHHHHHHHHHHhhHhcCCCCChHHHHHHHHHHHcCCChHHHHHHHHhCC
Q 038200 337 RAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMP 388 (523)
Q Consensus 337 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 388 (523)
-..+...|..++.+..+. + .|....-...+..+.. ++++.+.-.+..+.
T Consensus 376 v~r~~~~A~~~~k~aA~~-g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a 424 (552)
T KOG1550|consen 376 VERNLELAFAYYKKAAEK-G-NPSAAYLLGAFYEYGV-GRYDTALALYLYLA 424 (552)
T ss_pred cCCCHHHHHHHHHHHHHc-c-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHH
Confidence 234667777777777775 4 3322222222333333 55555554444443
No 368
>PRK12798 chemotaxis protein; Reviewed
Probab=76.75 E-value=72 Score=30.52 Aligned_cols=180 Identities=11% Similarity=0.142 Sum_probs=108.3
Q ss_pred cCChHHHHHHHHhcCC----CChHHHHHHHHHH-HhcCChHHHHHHHHHHHhCCCCCCCcCCCH----HHHHHHHHHHhh
Q 038200 267 CQKVEVAQRVFDSMAD----RNLVCWNAMILGH-CIHGKPEEGIKLFTALVNGTVAGGSISPDE----ITFIGVICACVR 337 (523)
Q Consensus 267 ~~~~~~a~~~~~~~~~----~~~~~~~~li~~~-~~~g~~~~a~~~~~~m~~~~~~~~~~~p~~----~~~~~ll~~~~~ 337 (523)
.|+.+++.+.+..+.. +....+-.|+.+- ....+..+|+.+|+...- ..|-. .....-+....+
T Consensus 125 ~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRL-------laPGTLvEEAALRRsi~la~~ 197 (421)
T PRK12798 125 SGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARL-------LAPGTLVEEAALRRSLFIAAQ 197 (421)
T ss_pred cCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHH-------hCCchHHHHHHHHHhhHHHHh
Confidence 4777777777777754 3445566666654 345678888888888766 33543 344455556678
Q ss_pred cCcHHHHHHHHHHhhHhcCCCCChHHHH-HHHHHHHcCC---ChHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHhcCC
Q 038200 338 AELLTEGRKYFRQMIDFYKIKPNFAHYW-CMANLYAGAE---LTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGA 413 (523)
Q Consensus 338 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 413 (523)
.|+.+++..+-.+....|...|=..-|. .+...+.+.+ ..+.-..++..|. -.--..+|..+...-...|+
T Consensus 198 ~g~~~rf~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~~~~~l~~~ls~~d-----~~~q~~lYL~iAR~Ali~Gk 272 (421)
T PRK12798 198 LGDADKFEALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEIRDARLVEILSFMD-----PERQRELYLRIARAALIDGK 272 (421)
T ss_pred cCcHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHhccccccHHHHHHHHHhcC-----chhHHHHHHHHHHHHHHcCc
Confidence 8888888877777777555555433332 2333333332 3344444555554 12235577778888888999
Q ss_pred HHHHHHHHHHHhhcCCCChhhHHHHHHHHHh-----cCChhHHHHHHHHHH
Q 038200 414 VAMVERLAKSFVDMDPQDFSRYQFLLNVYAV-----AGQWEDVARVRELMK 459 (523)
Q Consensus 414 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~-----~g~~~~A~~~~~~m~ 459 (523)
.+.|.-..+++..+... ...-...+..|.. ..+++++.+.+..+-
T Consensus 273 ~~lA~~As~~A~~L~~~-~~~~~~ra~LY~aaa~v~s~~~~~al~~L~~I~ 322 (421)
T PRK12798 273 TELARFASERALKLADP-DSADAARARLYRGAALVASDDAESALEELSQID 322 (421)
T ss_pred HHHHHHHHHHHHHhccC-CCcchHHHHHHHHHHccCcccHHHHHHHHhcCC
Confidence 99999999998886532 2233333344432 244566665555443
No 369
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=76.69 E-value=58 Score=29.43 Aligned_cols=66 Identities=11% Similarity=0.010 Sum_probs=45.5
Q ss_pred cCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhHhcCCCCChHHHHHHHHHHHcCCChHHHHHHHHh
Q 038200 321 ISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRK 386 (523)
Q Consensus 321 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 386 (523)
..++..+...++..+++.+++..-.++++.....-+..-|...|..+++.....|+..-..+++.+
T Consensus 198 ~~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~ 263 (292)
T PF13929_consen 198 KSLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDD 263 (292)
T ss_pred cCCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhC
Confidence 356666777777777777777777777777665323444667777777777777777666666654
No 370
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=76.42 E-value=72 Score=30.34 Aligned_cols=122 Identities=9% Similarity=0.085 Sum_probs=75.3
Q ss_pred CCHHHHHHHHHHHhhcCcHHHHHHHHHHhhHhcCCCCChHHHHHHHHHHH---cCCChHHHHHHHHhCCCCCCCCCchHH
Q 038200 323 PDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYA---GAELTEEAEEILRKMPEDNDNMSFESI 399 (523)
Q Consensus 323 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~g~~~~A~~~~~~~~~~~~~~~~~~~ 399 (523)
-...++..+-..|..+|+.+.|.++++++.-.++ .++......+. ..|. .++ +....-|..
T Consensus 38 yHidtLlqls~v~~~~gd~~~A~~lleRALf~~e-----~~~~~~F~~~~~~~~~g~--------~rL---~~~~~eNR~ 101 (360)
T PF04910_consen 38 YHIDTLLQLSEVYRQQGDHAQANDLLERALFAFE-----RAFHPSFSPFRSNLTSGN--------CRL---DYRRPENRQ 101 (360)
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH-----HHHHHHhhhhhcccccCc--------ccc---CCccccchH
Confidence 3455677777778888888888887777654210 00111110000 0010 000 111122444
Q ss_pred HHHHH---HHHHHhcCCHHHHHHHHHHHhhcCCC-ChhhHHHHHHHHH-hcCChhHHHHHHHHHHh
Q 038200 400 MWVSL---LSLCRFQGAVAMVERLAKSFVDMDPQ-DFSRYQFLLNVYA-VAGQWEDVARVRELMKK 460 (523)
Q Consensus 400 ~~~~l---~~~~~~~g~~~~a~~~~~~~~~~~p~-~~~~~~~l~~~~~-~~g~~~~A~~~~~~m~~ 460 (523)
.|.++ +..+.+.|-+..|.++.+-+..++|. ||......++.|+ ++++++--+++.+....
T Consensus 102 fflal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~ 167 (360)
T PF04910_consen 102 FFLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLA 167 (360)
T ss_pred HHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhh
Confidence 44444 44677889999999999999999998 8887778888876 77888888888887654
No 371
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=76.04 E-value=5.5 Score=20.94 Aligned_cols=29 Identities=17% Similarity=0.153 Sum_probs=25.1
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 038200 433 SRYQFLLNVYAVAGQWEDVARVRELMKKR 461 (523)
Q Consensus 433 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 461 (523)
.++..++..|...|++++|...+++..+.
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~ 30 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALEL 30 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHcc
Confidence 46788999999999999999999887653
No 372
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=75.88 E-value=4.6 Score=38.67 Aligned_cols=88 Identities=14% Similarity=0.055 Sum_probs=53.4
Q ss_pred HHHHHcCCChHHHHHHHHhCCCCCCCCCchHHHHHHHH-HHHHhcCCHHHHHHHHHHHhhcCCCChhhHHHHHHHHHhcC
Q 038200 368 ANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLL-SLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAG 446 (523)
Q Consensus 368 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 446 (523)
...+...++++.|..++.++++ ..|+...|...- .++.+.+++..|..=+.++++.+|.....|..-+.++.+.+
T Consensus 11 an~~l~~~~fd~avdlysKaI~----ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~ 86 (476)
T KOG0376|consen 11 ANEALKDKVFDVAVDLYSKAIE----LDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALG 86 (476)
T ss_pred HhhhcccchHHHHHHHHHHHHh----cCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHH
Confidence 4445556666666666666664 355433333332 45666666666666666666666666666666666666666
Q ss_pred ChhHHHHHHHHHH
Q 038200 447 QWEDVARVRELMK 459 (523)
Q Consensus 447 ~~~~A~~~~~~m~ 459 (523)
.+.+|...|+...
T Consensus 87 ~~~~A~~~l~~~~ 99 (476)
T KOG0376|consen 87 EFKKALLDLEKVK 99 (476)
T ss_pred HHHHHHHHHHHhh
Confidence 6666666666543
No 373
>PRK13342 recombination factor protein RarA; Reviewed
Probab=75.77 E-value=81 Score=30.71 Aligned_cols=114 Identities=18% Similarity=0.176 Sum_probs=61.2
Q ss_pred hHHHHHHHHHHHh---CC-CCCchHHHHHHHHHHccCChHHHHHHHhhcCCC-CcchHHHHHHHHHhcCCHHHHHHHHhc
Q 038200 104 ERGGMCHGLALKN---GV-DFELPVMNSLINMYGCFGAMDCARNMFVQMSPR-DLISWNSIVSGHVRSGDMSAAHELFDI 178 (523)
Q Consensus 104 ~~a~~~~~~~~~~---~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~ 178 (523)
++...+++..... |+ ..+......++... .|+...++.+++..... ... ..+...+++..
T Consensus 154 e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s--~Gd~R~aln~Le~~~~~~~~I-------------t~~~v~~~~~~ 218 (413)
T PRK13342 154 EDIEQLLKRALEDKERGLVELDDEALDALARLA--NGDARRALNLLELAALGVDSI-------------TLELLEEALQK 218 (413)
T ss_pred HHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhC--CCCHHHHHHHHHHHHHccCCC-------------CHHHHHHHHhh
Confidence 4555556555432 33 44445555554433 57777777777664211 011 22223333332
Q ss_pred CC---CCChhHHHHHHHHHHh---cCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc
Q 038200 179 MP---ERNVVSWNIMISGYSK---SGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRS 232 (523)
Q Consensus 179 ~~---~~~~~~~~~li~~~~~---~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~ 232 (523)
.. ..+...+..+++++.+ ..+++.|+.++..|.+.|..|....-..+..++-..
T Consensus 219 ~~~~~d~~~~~~~~~isa~~ks~rgsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~edi 278 (413)
T PRK13342 219 RAARYDKDGDEHYDLISALHKSIRGSDPDAALYYLARMLEAGEDPLFIARRLVIIASEDI 278 (413)
T ss_pred hhhccCCCccHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhh
Confidence 11 1222344555555555 478899999999999988777765555555544333
No 374
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=75.76 E-value=8.1 Score=26.83 Aligned_cols=19 Identities=11% Similarity=-0.155 Sum_probs=7.8
Q ss_pred HHHHHHHHHhcCCHHHHHH
Q 038200 401 WVSLLSLCRFQGAVAMVER 419 (523)
Q Consensus 401 ~~~l~~~~~~~g~~~~a~~ 419 (523)
+..++.++...|+++++++
T Consensus 46 lG~l~qA~~e~Gkyr~~L~ 64 (80)
T PF10579_consen 46 LGYLIQAHMEWGKYREMLA 64 (80)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444433
No 375
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=75.44 E-value=33 Score=30.66 Aligned_cols=87 Identities=8% Similarity=-0.016 Sum_probs=50.6
Q ss_pred HHHHHhcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHcCCCCchHHHHHHhhhhhh----
Q 038200 191 ISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSK---- 266 (523)
Q Consensus 191 i~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---- 266 (523)
|.+++..++|.+++...-+--+.--+........-|-.|.+.+.+..+.++-....+..-..+..-|.++++.|..
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VLl 169 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVLL 169 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHHh
Confidence 5677778888887765544433222223334445555577777777777776666654333334446666555543
Q ss_pred -cCChHHHHHHH
Q 038200 267 -CQKVEVAQRVF 277 (523)
Q Consensus 267 -~~~~~~a~~~~ 277 (523)
.|.+++|+++.
T Consensus 170 PLG~~~eAeelv 181 (309)
T PF07163_consen 170 PLGHFSEAEELV 181 (309)
T ss_pred ccccHHHHHHHH
Confidence 46666666655
No 376
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=75.43 E-value=24 Score=25.12 Aligned_cols=64 Identities=11% Similarity=0.043 Sum_probs=30.5
Q ss_pred HHHHHHHHHhCCCCCchHHHHHHHHHHccCChHHHHHHHhhcCCCCcchHHHHHHHHHhcCCHHHH
Q 038200 107 GMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAA 172 (523)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a 172 (523)
.++++.+.+.|+- +......+-.+-...|+.+.|.+++..+. +.+..|..++.++...|.-+-|
T Consensus 22 ~~v~d~ll~~~il-T~~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~~~LA 85 (88)
T cd08819 22 RDVCDKCLEQGLL-TEEDRNRIEAATENHGNESGARELLKRIV-QKEGWFSKFLQALRETEHHELA 85 (88)
T ss_pred HHHHHHHHhcCCC-CHHHHHHHHHhccccCcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCchhhh
Confidence 3445555555432 22222222222223455556666666655 5555555555555555554443
No 377
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=75.34 E-value=23 Score=27.24 Aligned_cols=60 Identities=15% Similarity=0.140 Sum_probs=43.6
Q ss_pred HHHHHHHHHHhCCCCCCCcCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhHhcCCCCChHHHHHHHH
Q 038200 303 EGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMAN 369 (523)
Q Consensus 303 ~a~~~~~~m~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 369 (523)
+..+-++.+..-. +.|++......+++|.+.+++..|.++|+.++.+ ..+....|-.++.
T Consensus 67 EvrkglN~l~~yD-----lVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K--~g~~k~~Y~y~v~ 126 (149)
T KOG4077|consen 67 EVRKGLNNLFDYD-----LVPSPKVIEAALRACRRVNDFATAVRILEAIKDK--CGAQKQVYPYYVK 126 (149)
T ss_pred HHHHHHHhhhccc-----cCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh--cccHHHHHHHHHH
Confidence 3445556666666 7899999999999999999999999999988874 4444445555543
No 378
>PRK11619 lytic murein transglycosylase; Provisional
Probab=75.19 E-value=1.1e+02 Score=31.85 Aligned_cols=247 Identities=6% Similarity=-0.103 Sum_probs=114.9
Q ss_pred cCCchHHHHHHHHHHHCC-CCCCH--HHHHHHHHHHhccccHHHHHHHHHHHHHcCCCCchHHHHHHhhhhhhcCChHHH
Q 038200 197 SGNPGCSLKLFREMMKSG-FRGND--KTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVA 273 (523)
Q Consensus 197 ~~~~~~a~~~~~~m~~~~-~~p~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 273 (523)
..+.+.|..++....... ..+.. .....+.......+...++...++...... .+......-+......++++.+
T Consensus 254 r~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~--~~~~~~e~r~r~Al~~~dw~~~ 331 (644)
T PRK11619 254 RQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRS--QSTSLLERRVRMALGTGDRRGL 331 (644)
T ss_pred HhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhccccc--CCcHHHHHHHHHHHHccCHHHH
Confidence 345577777777664432 22221 122233222223222344444444433221 1333334444444566777777
Q ss_pred HHHHHhcCCC---ChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcCCCHHHHHHHHHHHhhcCcH-HHHHHHHH
Q 038200 274 QRVFDSMADR---NLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELL-TEGRKYFR 349 (523)
Q Consensus 274 ~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~-~~a~~~~~ 349 (523)
...+..|... ...-.-=+..++...|+.++|...|+.+... . +|-.++.+ .+.|.. .-......
T Consensus 332 ~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~~--------~---~fYG~LAa-~~Lg~~~~~~~~~~~ 399 (644)
T PRK11619 332 NTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLMQQ--------R---GFYPMVAA-QRLGEEYPLKIDKAP 399 (644)
T ss_pred HHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhcC--------C---CcHHHHHH-HHcCCCCCCCCCCCC
Confidence 7777776431 1122223445555567777777777776331 1 22222211 111110 00000000
Q ss_pred HhhHhcCCCCChHHHHHHHHHHHcCCChHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcC-
Q 038200 350 QMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMD- 428 (523)
Q Consensus 350 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~- 428 (523)
.-.. .+..+ .-..-+..+...|....|...+..+... .+......+.......|..+.+..........+
T Consensus 400 ~~~~--~~~~~--~~~~ra~~L~~~g~~~~a~~ew~~~~~~-----~~~~~~~~la~~A~~~g~~~~ai~~~~~~~~~~~ 470 (644)
T PRK11619 400 KPDS--ALTQG--PEMARVRELMYWNMDNTARSEWANLVAS-----RSKTEQAQLARYAFNQQWWDLSVQATIAGKLWDH 470 (644)
T ss_pred chhh--hhccC--hHHHHHHHHHHCCCHHHHHHHHHHHHhc-----CCHHHHHHHHHHHHHCCCHHHHHHHHhhchhHHH
Confidence 0000 00000 1112345566778889999888887742 233344455555667788888777665543311
Q ss_pred --CCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCccC
Q 038200 429 --PQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRM 466 (523)
Q Consensus 429 --p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~ 466 (523)
-.-|..|...+..+.+.-..+.++-.---..+.++.+.
T Consensus 471 ~~~rfp~~~~~~~~~~a~~~~v~~~lv~ai~rqES~f~p~ 510 (644)
T PRK11619 471 LEERFPLAWNDEFRRYTSGKGIPQSYAMAIARQESAWNPK 510 (644)
T ss_pred HHHhCCcchHHHHHHHHHHcCCCHHHHHHHHHHhcCCCCC
Confidence 11233566667766666666665543333334444443
No 379
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=74.39 E-value=53 Score=29.49 Aligned_cols=122 Identities=12% Similarity=0.142 Sum_probs=68.8
Q ss_pred HHHHHHhcCCchHHHHHHHHHHHCCCCCCHH-------HHHHHHHHHhccccHHHHHHHHHH----HHHcCCCCchHHHH
Q 038200 190 MISGYSKSGNPGCSLKLFREMMKSGFRGNDK-------TMASVLTACGRSARFNEGRSVHGY----TVRTSLKPNIILDT 258 (523)
Q Consensus 190 li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~-------~~~~ll~~~~~~~~~~~a~~~~~~----~~~~~~~~~~~~~~ 258 (523)
+.+-.++.+++++|...|.+....|+..|.. +...+...|.+.|+...-.+.... |..-.-+....+..
T Consensus 9 ~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~Kiir 88 (421)
T COG5159 9 LANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKIIR 88 (421)
T ss_pred HHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHHHH
Confidence 3445567777888888888887777665543 344566667777765544433322 22211122345566
Q ss_pred HHhhhhhhc-CChHHHHHHHHhcCCC----C-----hHHHHHHHHHHHhcCChHHHHHHHHHH
Q 038200 259 ALIDLYSKC-QKVEVAQRVFDSMADR----N-----LVCWNAMILGHCIHGKPEEGIKLFTAL 311 (523)
Q Consensus 259 ~l~~~~~~~-~~~~~a~~~~~~~~~~----~-----~~~~~~li~~~~~~g~~~~a~~~~~~m 311 (523)
+|++.+... ..++..+.+.....+. + ...-.-++..+.+.|.+.+|+.+...+
T Consensus 89 tLiekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~l 151 (421)
T COG5159 89 TLIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPL 151 (421)
T ss_pred HHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 666665443 3355555555554331 1 112234567777888888887765443
No 380
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=73.86 E-value=13 Score=30.74 Aligned_cols=78 Identities=15% Similarity=0.124 Sum_probs=42.9
Q ss_pred HHHHHHHHhCCCCCCCCCch-HHHHHHHHHHHHhcC-----------CHHHHHHHHHHHhhcCCCChhhHHHHHHHHHhc
Q 038200 378 EEAEEILRKMPEDNDNMSFE-SIMWVSLLSLCRFQG-----------AVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVA 445 (523)
Q Consensus 378 ~~A~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g-----------~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 445 (523)
++|+.-|++.+. +.|+ ..++..+..++...+ .+++|...|+++.+.+|++. .|..-+....
T Consensus 52 edAisK~eeAL~----I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne-~Y~ksLe~~~-- 124 (186)
T PF06552_consen 52 EDAISKFEEALK----INPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDEDPNNE-LYRKSLEMAA-- 124 (186)
T ss_dssp HHHHHHHHHHHH----H-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-TT-H-HHHHHHHHHH--
T ss_pred HHHHHHHHHHHh----cCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhcCCCcH-HHHHHHHHHH--
Confidence 344444444442 4454 345555555544332 26778888888888999664 6776666553
Q ss_pred CChhHHHHHHHHHHhCCCccC
Q 038200 446 GQWEDVARVRELMKKRRMGRM 466 (523)
Q Consensus 446 g~~~~A~~~~~~m~~~~~~~~ 466 (523)
+|-++..++.+.+....
T Consensus 125 ----kap~lh~e~~~~~~~~q 141 (186)
T PF06552_consen 125 ----KAPELHMEIHKQGLGQQ 141 (186)
T ss_dssp ----THHHHHHHHHHSSS---
T ss_pred ----hhHHHHHHHHHHHhhhh
Confidence 46677777766655443
No 381
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=73.77 E-value=7.7 Score=20.96 Aligned_cols=30 Identities=7% Similarity=0.174 Sum_probs=22.8
Q ss_pred CCHHHHHHHHHHHhhcCCCChhhHHHHHHH
Q 038200 412 GAVAMVERLAKSFVDMDPQDFSRYQFLLNV 441 (523)
Q Consensus 412 g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 441 (523)
|+.+.+..++++++...|.++..|...+..
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~~ 30 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAEF 30 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHHH
Confidence 467788888888888888777777766543
No 382
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=73.49 E-value=26 Score=34.72 Aligned_cols=135 Identities=14% Similarity=0.040 Sum_probs=92.4
Q ss_pred cCCCHHHHHHHHHHHhhc--CcHHHHHHHHHHhhHhcCCCCChHHHHHHHHHHH-cCCChHHHHHHHHhCCCCCCCCCch
Q 038200 321 ISPDEITFIGVICACVRA--ELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYA-GAELTEEAEEILRKMPEDNDNMSFE 397 (523)
Q Consensus 321 ~~p~~~~~~~ll~~~~~~--~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~~~~~~~~ 397 (523)
-.|+..+..+++.-.... ...+.+-.++-.|.. .+.|--...+ +...|. ..|+...|.+.+..... ..|.
T Consensus 567 ~~~~~~~~k~~~~r~~~~~i~e~e~~~~~~~~~~~--~~~p~w~~ln-~aglywr~~gn~~~a~~cl~~a~~----~~p~ 639 (886)
T KOG4507|consen 567 KMPDDHARKILLSRINNYTIPEEEIGSFLFHAINK--PNAPIWLILN-EAGLYWRAVGNSTFAIACLQRALN----LAPL 639 (886)
T ss_pred cCchHHHHHHHHHHHhcccCcHHHHHHHHHHHhcC--CCCCeEEEee-cccceeeecCCcHHHHHHHHHHhc----cChh
Confidence 346666666665443322 233445555555554 3444322222 233444 47899999999888763 2332
Q ss_pred --HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 038200 398 --SIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRR 462 (523)
Q Consensus 398 --~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 462 (523)
.+....|.....+.|....|..++.+.+.+....|-++..++++|....+.+.|++.|++..+..
T Consensus 640 ~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~~~~~~a~~~~ 706 (886)
T KOG4507|consen 640 QQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGALEAFRQALKLT 706 (886)
T ss_pred hhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHHHHHHHHHhcC
Confidence 23445666677778888899999999999887788899999999999999999999999886654
No 383
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=72.57 E-value=66 Score=33.17 Aligned_cols=61 Identities=10% Similarity=0.069 Sum_probs=33.1
Q ss_pred hHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHH----------HHHHHHHHHhccccHHHHHHHHHHHHHc
Q 038200 185 VSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDK----------TMASVLTACGRSARFNEGRSVHGYTVRT 248 (523)
Q Consensus 185 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~----------~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 248 (523)
.+-..++-.|....+++...++.+.+.+. ||.. .|...++---+-|+-++|..+.-.+++.
T Consensus 202 d~V~nlmlSyRDvQdY~amirLVe~Lk~i---P~t~~vve~~nv~f~YaFALNRRNr~GDRakAL~~~l~lve~ 272 (1226)
T KOG4279|consen 202 DTVSNLMLSYRDVQDYDAMIRLVEDLKRI---PDTLKVVETHNVRFHYAFALNRRNRPGDRAKALNTVLPLVEK 272 (1226)
T ss_pred HHHHHHHhhhccccchHHHHHHHHHHHhC---cchhhhhccCceEEEeeehhcccCCCccHHHHHHHHHHHHHh
Confidence 34455666666777777777777776652 2221 2233333333446666666665555543
No 384
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=72.55 E-value=48 Score=26.56 Aligned_cols=26 Identities=12% Similarity=0.332 Sum_probs=13.7
Q ss_pred HHHHHHHHHHhcCCchHHHHHHHHHH
Q 038200 186 SWNIMISGYSKSGNPGCSLKLFREMM 211 (523)
Q Consensus 186 ~~~~li~~~~~~~~~~~a~~~~~~m~ 211 (523)
.|..........+...++..+.+.+.
T Consensus 95 ~Wr~~A~~~le~~~~~~a~~Lv~al~ 120 (153)
T TIGR02561 95 EWHVHADEVLARDADADAVALVRALL 120 (153)
T ss_pred HHHHHHHHHHHhCCCHhHHHHHHHHh
Confidence 34444444455555555555555554
No 385
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=72.52 E-value=79 Score=29.05 Aligned_cols=149 Identities=12% Similarity=0.165 Sum_probs=74.8
Q ss_pred hHHHHHHHHHHHhCCCCCCCcCCCHHHHHHHHHHHhh--cC----cHHHHHHHHHHhhHhcCCCC--ChHHHHHHHHHHH
Q 038200 301 PEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVR--AE----LLTEGRKYFRQMIDFYKIKP--NFAHYWCMANLYA 372 (523)
Q Consensus 301 ~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~ll~~~~~--~~----~~~~a~~~~~~~~~~~~~~~--~~~~~~~l~~~~~ 372 (523)
+.+.+.+++.|.+.| ..-+..+|.+....... .. ....|..+|+.|++.+.+-. +-.++..|+..
T Consensus 78 ~~~~~~~y~~L~~~g-----Fk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~-- 150 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAG-----FKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM-- 150 (297)
T ss_pred HHHHHHHHHHHHHhc-----cCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--
Confidence 345567888888888 66666666553333322 22 35678889999998755433 33444444332
Q ss_pred cCCCh----HHHHHHHHhCCCCCCCCCc--hHHHHHHHHHHHHhcCC--HHHHHHHHHHHhhcCCC-ChhhHHHHHHHHH
Q 038200 373 GAELT----EEAEEILRKMPEDNDNMSF--ESIMWVSLLSLCRFQGA--VAMVERLAKSFVDMDPQ-DFSRYQFLLNVYA 443 (523)
Q Consensus 373 ~~g~~----~~A~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~--~~~a~~~~~~~~~~~p~-~~~~~~~l~~~~~ 443 (523)
..++. +.+..+|+.+.+. |+.. +......++..+....+ ..++.++++.+.+.+-. ....|..++-+..
T Consensus 151 ~~~~~e~l~~~~E~~Y~~L~~~--~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGlLal 228 (297)
T PF13170_consen 151 TSEDVEELAERMEQCYQKLADA--GFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGLLAL 228 (297)
T ss_pred ccccHHHHHHHHHHHHHHHHHh--CCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHHHHh
Confidence 34443 3456666666643 3433 23333333333322222 34666677776664332 2223444443333
Q ss_pred hcCChhHHHHHHHHH
Q 038200 444 VAGQWEDVARVRELM 458 (523)
Q Consensus 444 ~~g~~~~A~~~~~~m 458 (523)
-.+..++...-+.++
T Consensus 229 l~~~~~~~~~~i~ev 243 (297)
T PF13170_consen 229 LEDPEEKIVEEIKEV 243 (297)
T ss_pred cCCchHHHHHHHHHH
Confidence 333332444433333
No 386
>KOG1498 consensus 26S proteasome regulatory complex, subunit RPN5/PSMD12 [Posttranslational modification, protein turnover, chaperones]
Probab=71.83 E-value=91 Score=29.47 Aligned_cols=222 Identities=10% Similarity=0.038 Sum_probs=128.3
Q ss_pred cCChHHHHHHHHhcCC---------CChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcCCCHHHHHHHHHHHhh
Q 038200 267 CQKVEVAQRVFDSMAD---------RNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVR 337 (523)
Q Consensus 267 ~~~~~~a~~~~~~~~~---------~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~ll~~~~~ 337 (523)
.++++.|++-+-...+ .+......+++.|...++|+.--+...-+.+.. --...+...++.-+..
T Consensus 25 ~~~~~~~ie~Ll~~EkqtR~~~D~~s~~kv~~~i~~lc~~~~~w~~Lne~i~~Lskkr------gqlk~ai~~Mvq~~~~ 98 (439)
T KOG1498|consen 25 QIDLEAAIEELLNLEKQTRLASDMASNTKVLEEIMKLCFSAKDWDLLNEQIRLLSKKR------GQLKQAIQSMVQQAMT 98 (439)
T ss_pred hhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHh------hHHHHHHHHHHHHHHH
Confidence 5667777666555433 233456677788888888888877777776654 1222333444433221
Q ss_pred ----cCcHHHHHH---HHHHhhHhcCCCC---ChHHHHHHHHHHHcCCChHHHHHHHHhCCCCCCCCCchHHHHH---HH
Q 038200 338 ----AELLTEGRK---YFRQMIDFYKIKP---NFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWV---SL 404 (523)
Q Consensus 338 ----~~~~~~a~~---~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~---~l 404 (523)
..+.+.-+. .++...+. .+-. ....-..|...+-..|+.++|..++.+..-...|.---..-.. --
T Consensus 99 y~~~~~d~~~k~~li~tLr~Vteg-kIyvEvERarlTk~L~~ike~~Gdi~~Aa~il~el~VETygsm~~~ekV~fiLEQ 177 (439)
T KOG1498|consen 99 YIDGTPDLETKIKLIETLRTVTEG-KIYVEVERARLTKMLAKIKEEQGDIAEAADILCELQVETYGSMEKSEKVAFILEQ 177 (439)
T ss_pred hccCCCCchhHHHHHHHHHHhhcC-ceEEeehHHHHHHHHHHHHHHcCCHHHHHHHHHhcchhhhhhhHHHHHHHHHHHH
Confidence 112222222 22222221 1100 1233345677788999999999999988743322221111112 22
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhc---CCC----ChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCCceeEEEeCCe
Q 038200 405 LSLCRFQGAVAMVERLAKSFVDM---DPQ----DFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLKEV 477 (523)
Q Consensus 405 ~~~~~~~g~~~~a~~~~~~~~~~---~p~----~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~ 477 (523)
+..|...+|+-.|.-+-+++... +|+ -...|..++....+.+.|-++-+.|+..-+-|-......-|......
T Consensus 178 mrKOG~~~D~vra~i~skKI~~K~F~~~~~~~lKlkyY~lmI~l~lh~~~Yl~v~~~Yraiy~t~~vk~d~~kw~~vL~~ 257 (439)
T KOG1498|consen 178 MRLCLLRLDYVRAQIISKKINKKFFEKPDVQELKLKYYELMIRLGLHDRAYLNVCRSYRAIYDTGNVKEDPEKWIEVLRS 257 (439)
T ss_pred HHHHHHhhhHHHHHHHHHHhhHHhcCCccHHHHHHHHHHHHHHhcccccchhhHHHHHHHHhcccccccChhhhhhhhhh
Confidence 45688889999998888877652 222 12367888888889999999999999887754433322235555555
Q ss_pred EEEEecCCCCchHHHHHH
Q 038200 478 VEKLKVGHFWRGGMKEEV 495 (523)
Q Consensus 478 ~~~~~~~~~~~~~~~~~l 495 (523)
+..|+.-.|.-.+-..++
T Consensus 258 iv~f~~LAp~dneQsdll 275 (439)
T KOG1498|consen 258 IVSFCVLAPHDNEQSDLL 275 (439)
T ss_pred heeEEeecCCCcHHHHHH
Confidence 555665555554433333
No 387
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=71.64 E-value=11 Score=22.91 Aligned_cols=24 Identities=17% Similarity=0.382 Sum_probs=15.0
Q ss_pred HHHHHHhcCCchHHHHHHHHHHHC
Q 038200 190 MISGYSKSGNPGCSLKLFREMMKS 213 (523)
Q Consensus 190 li~~~~~~~~~~~a~~~~~~m~~~ 213 (523)
+..+|...|+.+.|.+++++....
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~ 28 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEE 28 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHc
Confidence 455666666666666666666644
No 388
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=71.25 E-value=40 Score=25.13 Aligned_cols=79 Identities=10% Similarity=0.042 Sum_probs=49.2
Q ss_pred cHHHHHHHHHHHHHcCCCCchHHHHHHhhhhhhcCChHHHHHHHHhcCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 038200 234 RFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVN 313 (523)
Q Consensus 234 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 313 (523)
..++|..|.+.+...+. ....+--+-+..+.+.|+++.|+..=.....||...|.+|-. .+.|-.+++...+.++..
T Consensus 21 cH~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~ALl~~~~~~~pdL~p~~AL~a--~klGL~~~~e~~l~rla~ 97 (116)
T PF09477_consen 21 CHQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEALLLPQCHCYPDLEPWAALCA--WKLGLASALESRLTRLAS 97 (116)
T ss_dssp -HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHHHHHHTTS--GGGHHHHHHHH--HHCT-HHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHHHHhcccCCCccHHHHHHHHH--HhhccHHHHHHHHHHHHh
Confidence 46778888887777653 233333344556778888888855444455578887776644 477888888888888777
Q ss_pred CC
Q 038200 314 GT 315 (523)
Q Consensus 314 ~~ 315 (523)
+|
T Consensus 98 ~g 99 (116)
T PF09477_consen 98 SG 99 (116)
T ss_dssp -S
T ss_pred CC
Confidence 65
No 389
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=70.71 E-value=57 Score=28.54 Aligned_cols=118 Identities=8% Similarity=-0.028 Sum_probs=65.6
Q ss_pred hhhcCChHHHHHHHHhcC--CCChH-HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcCCCHHH-HHHHHHHHhhcC
Q 038200 264 YSKCQKVEVAQRVFDSMA--DRNLV-CWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEIT-FIGVICACVRAE 339 (523)
Q Consensus 264 ~~~~~~~~~a~~~~~~~~--~~~~~-~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~p~~~~-~~~ll~~~~~~~ 339 (523)
|....+++.|+..|.+.. .|+.. -|..-+..+.+..+++.+..--.+.++ +.||.+- ...+........
T Consensus 20 ~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralq-------l~~N~vk~h~flg~~~l~s~ 92 (284)
T KOG4642|consen 20 CFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQ-------LDPNLVKAHYFLGQWLLQSK 92 (284)
T ss_pred ccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHh-------cChHHHHHHHHHHHHHHhhc
Confidence 444456677777666553 35553 355667777777777777666666665 4566543 333344556666
Q ss_pred cHHHHHHHHHHhhHh---cCCCCChHHHHHHHHHHHcCCChHHHHHHHHhCC
Q 038200 340 LLTEGRKYFRQMIDF---YKIKPNFAHYWCMANLYAGAELTEEAEEILRKMP 388 (523)
Q Consensus 340 ~~~~a~~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 388 (523)
.+++|+..+.+.... ..+.+.......|..+--..-...+..++.++..
T Consensus 93 ~~~eaI~~Lqra~sl~r~~~~~~~~di~~~L~~ak~~~w~v~e~~Ri~Q~~E 144 (284)
T KOG4642|consen 93 GYDEAIKVLQRAYSLLREQPFTFGDDIPKALRDAKKKRWEVSEEKRIRQELE 144 (284)
T ss_pred cccHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCccchhHHHHHHHHhh
Confidence 777777777766332 1333344445555544444444444555444444
No 390
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=70.47 E-value=33 Score=27.35 Aligned_cols=50 Identities=22% Similarity=0.266 Sum_probs=34.1
Q ss_pred ChhHHHHHHHHHHhcCC-chHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc
Q 038200 183 NVVSWNIMISGYSKSGN-PGCSLKLFREMMKSGFRGNDKTMASVLTACGRS 232 (523)
Q Consensus 183 ~~~~~~~li~~~~~~~~-~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~ 232 (523)
+-.+|..++.+..+..- ---+..+|.-|.+.+.+++..-|..++.++.+.
T Consensus 78 ~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~li~~~l~g 128 (145)
T PF13762_consen 78 DNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCLIKAALRG 128 (145)
T ss_pred ccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcC
Confidence 45667777777755554 344566777777767777777888887777654
No 391
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=70.46 E-value=14 Score=25.76 Aligned_cols=45 Identities=7% Similarity=0.065 Sum_probs=25.8
Q ss_pred hcCCHHHHHHHHHHHhhcCCCChh---hHHHHHHHHHhcCChhHHHHH
Q 038200 410 FQGAVAMVERLAKSFVDMDPQDFS---RYQFLLNVYAVAGQWEDVARV 454 (523)
Q Consensus 410 ~~g~~~~a~~~~~~~~~~~p~~~~---~~~~l~~~~~~~g~~~~A~~~ 454 (523)
...+.+.|...++++++..++.+. ++..|+.+|+..|++.+.+++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566666666666664443332 344455666666776666554
No 392
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=69.96 E-value=1.3e+02 Score=30.61 Aligned_cols=272 Identities=6% Similarity=-0.020 Sum_probs=147.7
Q ss_pred HHHHHHHHhcCCC-CChhHHHHHHHH-----HHhcCCchHHHHHHHHHHH-------CCCCCCHHHHHHHHHHHhccc--
Q 038200 169 MSAAHELFDIMPE-RNVVSWNIMISG-----YSKSGNPGCSLKLFREMMK-------SGFRGNDKTMASVLTACGRSA-- 233 (523)
Q Consensus 169 ~~~a~~~~~~~~~-~~~~~~~~li~~-----~~~~~~~~~a~~~~~~m~~-------~~~~p~~~~~~~ll~~~~~~~-- 233 (523)
...|.+.++...+ .+...-..+... +....+++.|+.+|+...+ .| .......+..+|.+..
T Consensus 228 ~~~a~~~~~~~a~~g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~~ 304 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLGV 304 (552)
T ss_pred hhHHHHHHHHHHhhcchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCCC
Confidence 5667777777665 333333333322 4456789999999998877 44 3334556666666532
Q ss_pred ---cHHHHHHHHHHHHHcCCCCchHHHHHHhhhhhh-cCChHHHHHHHHhcCCC-ChHHHHHHHHHHH----hcCChHHH
Q 038200 234 ---RFNEGRSVHGYTVRTSLKPNIILDTALIDLYSK-CQKVEVAQRVFDSMADR-NLVCWNAMILGHC----IHGKPEEG 304 (523)
Q Consensus 234 ---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~-~~~~~~~li~~~~----~~g~~~~a 304 (523)
+.+.|..++....+.|.+ +....-..+..... ..+...|.++|...... ....+-.+...|. ...+...|
T Consensus 305 ~~~d~~~A~~~~~~aA~~g~~-~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~~A~~~la~~y~~G~gv~r~~~~A 383 (552)
T KOG1550|consen 305 EKIDYEKALKLYTKAAELGNP-DAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHILAIYRLALCYELGLGVERNLELA 383 (552)
T ss_pred ccccHHHHHHHHHHHHhcCCc-hHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCcCCCHHHH
Confidence 677899999999888743 44333222222222 24678999999888653 3333333333332 34578899
Q ss_pred HHHHHHHHhCCCCCCCcCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhHhcCCCCChHHHHHHHHHH---Hc----CCCh
Q 038200 305 IKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLY---AG----AELT 377 (523)
Q Consensus 305 ~~~~~~m~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~---~~----~g~~ 377 (523)
..++.+..+.| .|...--...+..+.. +..+.+.-.+..+.+. +.+.....-..+.... .. ..+.
T Consensus 384 ~~~~k~aA~~g------~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~-g~~~~q~~a~~l~~~~~~~~~~~~~~~~~ 455 (552)
T KOG1550|consen 384 FAYYKKAAEKG------NPSAAYLLGAFYEYGV-GRYDTALALYLYLAEL-GYEVAQSNAAYLLDQSEEDLFSRGVISTL 455 (552)
T ss_pred HHHHHHHHHcc------ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHh-hhhHHhhHHHHHHHhccccccccccccch
Confidence 99999998876 3332222233334444 6666666666666553 3332111111111111 11 2244
Q ss_pred HHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHh----cCCHHHHHHHHHHHhhcCCCChhhHHHHHHHHHhc-CC--hhH
Q 038200 378 EEAEEILRKMPEDNDNMSFESIMWVSLLSLCRF----QGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVA-GQ--WED 450 (523)
Q Consensus 378 ~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~-g~--~~~ 450 (523)
+.+...+.+.... -+......+...|.. ..+.+.|...+..+.+.. ......|+..+... |- +..
T Consensus 456 ~~~~~~~~~a~~~-----g~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~---~~~~~nlg~~~e~g~g~~~~~~ 527 (552)
T KOG1550|consen 456 ERAFSLYSRAAAQ-----GNADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG---AQALFNLGYMHEHGEGIKVLHL 527 (552)
T ss_pred hHHHHHHHHHHhc-----cCHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh---hHHHhhhhhHHhcCcCcchhHH
Confidence 5566666665522 222222333333222 124666666666666544 45555666665542 11 466
Q ss_pred HHHHHHHHHh
Q 038200 451 VARVRELMKK 460 (523)
Q Consensus 451 A~~~~~~m~~ 460 (523)
|.+++++..+
T Consensus 528 a~~~~~~~~~ 537 (552)
T KOG1550|consen 528 AKRYYDQASE 537 (552)
T ss_pred HHHHHHHHHh
Confidence 7777776654
No 393
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=69.34 E-value=1.1e+02 Score=29.98 Aligned_cols=322 Identities=11% Similarity=0.059 Sum_probs=0.0
Q ss_pred HHCCCCCCcccHHHHHHHHHccCCchHHHHHHHHHHHhCCCCCchHHHHHHHHHHccC--ChHHHHHHHhhcC-------
Q 038200 79 IKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFG--AMDCARNMFVQMS------- 149 (523)
Q Consensus 79 ~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~------- 149 (523)
+..+..............-...+.++...+.+..+...|.......+|..+..|.+.| ..+.-++-++.+.
T Consensus 9 ktq~~~d~~~~l~~~a~~~f~~~~~d~cl~~l~~l~t~~~~~~~v~~n~av~~~~kt~~tq~~~ll~el~aL~~~~~~~~ 88 (696)
T KOG2471|consen 9 KTQAGEDENYSLLCQAHEQFNNSEFDRCLELLQELETRGESSGPVLHNRAVVSYYKTGCTQHSVLLKELEALTADADAPG 88 (696)
T ss_pred ccccccchhHHHHHHHHhccCCcchHHHHHHHHHHHhccccccceeeehhhHHHHhcccchhHHHHHHHHHHHHhhcccc
Q ss_pred --------CCCcchHHHHHHHHHhcCCHHHHHHHHhcCCC-----------CChhHHHHHHHHHHhcCCchHHHHHHHHH
Q 038200 150 --------PRDLISWNSIVSGHVRSGDMSAAHELFDIMPE-----------RNVVSWNIMISGYSKSGNPGCSLKLFREM 210 (523)
Q Consensus 150 --------~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-----------~~~~~~~~li~~~~~~~~~~~a~~~~~~m 210 (523)
......+....-+|.....+-.|+++...... .+...-..+.-.-.+..+...-+.++.+|
T Consensus 89 ~~~~gld~~~~t~~~yn~aVi~yh~~~~g~a~~~~~~lv~r~e~le~~~aa~v~~l~~~l~~~t~q~e~al~~l~vL~~~ 168 (696)
T KOG2471|consen 89 DVSSGLSLKQGTVMDYNFAVIFYHHEENGSAMQLSSNLVSRTESLESSSAASVTLLSDLLAAETSQCEEALDYLNVLAEI 168 (696)
T ss_pred chhcchhhhcchHHhhhhheeeeeHhhcchHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHcCCCCchHHHHHHhhhhhhcCChHHHHHHHHhcCC---CChHH
Q 038200 211 MKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMAD---RNLVC 287 (523)
Q Consensus 211 ~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~ 287 (523)
...+ ......-+.-.....+.+....|..-+... .+......--+.+|....++..+..-.+.... .....
T Consensus 169 ~~~~-~~~~~gn~~~~nn~~kt~s~~aAe~s~~~a-----~~k~~~~~ykVr~llq~~~Lk~~krevK~vmn~a~~s~~~ 242 (696)
T KOG2471|consen 169 EAEK-RMKLVGNHIPANNLLKTLSPSAAERSFSTA-----DLKLELQLYKVRFLLQTRNLKLAKREVKHVMNIAQDSSMA 242 (696)
T ss_pred HHhh-hccccccccchhhhcccCCcchhcccchhh-----ccchhhhHhhHHHHHHHHHHHHHHHhhhhhhhhcCCCcHH
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcCCCHHH---HHHHHHHHhhcCcHHHHHHHHHHhhH------hcCCC
Q 038200 288 WNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEIT---FIGVICACVRAELLTEGRKYFRQMID------FYKIK 358 (523)
Q Consensus 288 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~p~~~~---~~~ll~~~~~~~~~~~a~~~~~~~~~------~~~~~ 358 (523)
...--+.+.-.|++.+|.+++...--..-.++-+.|.-.+ ++.|.....+.|.+..+..+|.+..+ ..|++
T Consensus 243 l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~ 322 (696)
T KOG2471|consen 243 LLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLK 322 (696)
T ss_pred HHHHHHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCC
Q ss_pred C----------ChHHHHHHHHHHHcCCChHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHH
Q 038200 359 P----------NFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCR 409 (523)
Q Consensus 359 ~----------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 409 (523)
| +........-.|...|++-.|.+.|.+.... +..++..|..+..+|.
T Consensus 323 ~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~v---fh~nPrlWLRlAEcCi 380 (696)
T KOG2471|consen 323 PAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHV---FHRNPRLWLRLAECCI 380 (696)
T ss_pred CCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHH---HhcCcHHHHHHHHHHH
No 394
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=69.30 E-value=52 Score=25.61 Aligned_cols=42 Identities=10% Similarity=0.106 Sum_probs=30.6
Q ss_pred HHHHHHHHHhh--cCCCChhhHHHHHHHHHhcCChhHHHHHHHH
Q 038200 416 MVERLAKSFVD--MDPQDFSRYQFLLNVYAVAGQWEDVARVREL 457 (523)
Q Consensus 416 ~a~~~~~~~~~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 457 (523)
.+..+|+.+.+ ++...+..|...+..+...|++++|.++++.
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 66777777765 4455677788888888888888888888764
No 395
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=68.99 E-value=3.7 Score=39.23 Aligned_cols=101 Identities=14% Similarity=0.053 Sum_probs=76.6
Q ss_pred HHHHHhhcCcHHHHHHHHHHhhHhcCCCCChHHHHHH-HHHHHcCCChHHHHHHHHhCCCCCCCCCch-HHHHHHHHHHH
Q 038200 331 VICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCM-ANLYAGAELTEEAEEILRKMPEDNDNMSFE-SIMWVSLLSLC 408 (523)
Q Consensus 331 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~~~l~~~~ 408 (523)
-+..+...+.++.|..++.++.+ +.||...|... ..++.+.+++..|+.=+.++++. .|. ...|..-..+|
T Consensus 10 ean~~l~~~~fd~avdlysKaI~---ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~----dP~~~K~Y~rrg~a~ 82 (476)
T KOG0376|consen 10 EANEALKDKVFDVAVDLYSKAIE---LDPNCAIYFANRALAHLKVESFGGALHDALKAIEL----DPTYIKAYVRRGTAV 82 (476)
T ss_pred HHhhhcccchHHHHHHHHHHHHh---cCCcceeeechhhhhheeechhhhHHHHHHhhhhc----CchhhheeeeccHHH
Confidence 34556778899999999999997 46765555443 48889999999999988888853 454 33444445677
Q ss_pred HhcCCHHHHHHHHHHHhhcCCCChhhHHHH
Q 038200 409 RFQGAVAMVERLAKSFVDMDPQDFSRYQFL 438 (523)
Q Consensus 409 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 438 (523)
...+.+.+|...|+....+.|+++.+-..+
T Consensus 83 m~l~~~~~A~~~l~~~~~l~Pnd~~~~r~~ 112 (476)
T KOG0376|consen 83 MALGEFKKALLDLEKVKKLAPNDPDATRKI 112 (476)
T ss_pred HhHHHHHHHHHHHHHhhhcCcCcHHHHHHH
Confidence 888899999999999999999887544433
No 396
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=68.71 E-value=32 Score=31.56 Aligned_cols=95 Identities=9% Similarity=0.075 Sum_probs=68.5
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHhCCCCCCC-CCchHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhhHHHHHHH
Q 038200 363 HYWCMANLYAGAELTEEAEEILRKMPEDNDN-MSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNV 441 (523)
Q Consensus 363 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 441 (523)
.|.-=.+-|.+..++..|...|.+.+...++ -..+.+.|+.-..+-...|++..++.-..+++..+|.+..+|..=+.+
T Consensus 83 n~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Akc 162 (390)
T KOG0551|consen 83 NYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGAKC 162 (390)
T ss_pred HHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhHH
Confidence 3444456677888888888888877654332 223456666666666778899999999999999999888888888888
Q ss_pred HHhcCChhHHHHHHHH
Q 038200 442 YAVAGQWEDVARVREL 457 (523)
Q Consensus 442 ~~~~g~~~~A~~~~~~ 457 (523)
+....++++|....++
T Consensus 163 ~~eLe~~~~a~nw~ee 178 (390)
T KOG0551|consen 163 LLELERFAEAVNWCEE 178 (390)
T ss_pred HHHHHHHHHHHHHHhh
Confidence 8888886666655443
No 397
>cd08332 CARD_CASP2 Caspase activation and recruitment domain of Caspase-2. Caspase activation and recruitment domain (CARD) similar to that found in caspase-2. Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Caspase-2 (also known as ICH1, NEDD2, or CASP2) is one of the most evolutionarily conserved caspases, and plays a role in apoptosis, DNA damage response, cell cycle regulation, and tumor suppression. It is localized in the nucleus and exhibits properties of both an initiator and an effector caspase. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and
Probab=68.70 E-value=16 Score=26.43 Aligned_cols=58 Identities=14% Similarity=0.128 Sum_probs=36.5
Q ss_pred hHHHHHHHHhCCCCCChhHHHHHHHHhhccCCchhHHHHhccCCCCCcccHHHHHHHHHhCCC
Q 038200 5 LQIQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSNSCV 67 (523)
Q Consensus 5 ~~i~~~~~~~g~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~ 67 (523)
..|+++++..|+- ++..... +-+...+.+++.++++.++++...+|..+..++...+.
T Consensus 23 ~~v~~~L~~~gvl--t~~~~~~---I~~~~t~~~k~~~Lld~L~~RG~~AF~~F~~aL~~~~~ 80 (90)
T cd08332 23 DELLIHLLQKDIL--TDSMAES---IMAKPTSFSQNVALLNLLPKRGPRAFSAFCEALRETSQ 80 (90)
T ss_pred HHHHHHHHHcCCC--CHHHHHH---HHcCCCcHHHHHHHHHHHHHhChhHHHHHHHHHHhcCh
Confidence 4567777777766 3333222 33344566777777777777777777777777755443
No 398
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=67.84 E-value=8.4 Score=29.93 Aligned_cols=32 Identities=13% Similarity=0.278 Sum_probs=22.3
Q ss_pred hCCCchHHHHHHHHHHHCCCCCCcccHHHHHHHH
Q 038200 64 NSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSC 97 (523)
Q Consensus 64 ~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~ 97 (523)
+.|.-..|-.+|+.|+..|-+||. |+.|+..+
T Consensus 107 ~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~a 138 (140)
T PF11663_consen 107 AYGSKTDAYAVFRKMLERGNPPDD--WDALLKEA 138 (140)
T ss_pred hhccCCcHHHHHHHHHhCCCCCcc--HHHHHHHh
Confidence 345666778888888888877774 67766654
No 399
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=67.44 E-value=36 Score=26.23 Aligned_cols=46 Identities=15% Similarity=0.187 Sum_probs=33.4
Q ss_pred CCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhhHHHH
Q 038200 393 NMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFL 438 (523)
Q Consensus 393 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 438 (523)
.+-|++.+....+.+|++.+|+..|.++++-+...-++.-..|-.+
T Consensus 79 DlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K~g~~k~~Y~y~ 124 (149)
T KOG4077|consen 79 DLVPSPKVIEAALRACRRVNDFATAVRILEAIKDKCGAQKQVYPYY 124 (149)
T ss_pred ccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHhcccHHHHHHHH
Confidence 3678888888888888888899888888888776444333344444
No 400
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=66.82 E-value=97 Score=27.83 Aligned_cols=158 Identities=13% Similarity=-0.016 Sum_probs=68.5
Q ss_pred cCCchhHHHHhccCCCCCcccHHHHHHHHHhCCCchHHHHHHHHH----HHCCCCCCcccHHHHHHHHHccCCch-HHHH
Q 038200 34 FGSPDYTVLVFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQM----IKNGFMPNSYTFVSLFGSCAKTGCVE-RGGM 108 (523)
Q Consensus 34 ~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m----~~~~~~p~~~~~~~ll~~~~~~~~~~-~a~~ 108 (523)
++++++|++++-. =...+.+.|+...|-++-..| .+.+++.|......++..+...+.-+ .-..
T Consensus 3 ~kky~eAidLL~~-----------Ga~~ll~~~Q~~sg~DL~~lliev~~~~~~~~~~~~~~rl~~l~~~~~~~~p~r~~ 71 (260)
T PF04190_consen 3 QKKYDEAIDLLYS-----------GALILLKHGQYGSGADLALLLIEVYEKSEDPVDEESIARLIELISLFPPEEPERKK 71 (260)
T ss_dssp TT-HHHHHHHHHH-----------HHHHHHHTT-HHHHHHHHHHHHHHHHHTT---SHHHHHHHHHHHHHS-TT-TTHHH
T ss_pred cccHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCcchHHH
Confidence 4556666665532 233455556555554443333 33455555555555555544332211 1222
Q ss_pred HHHHHH---HhC--CCCCchHHHHHHHHHHccCChHHHHHHHhhcCCCCcchHHHHHHHHHhcCCHHHHHHHHhcCCCCC
Q 038200 109 CHGLAL---KNG--VDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERN 183 (523)
Q Consensus 109 ~~~~~~---~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 183 (523)
+.+.++ +.| ..-++.....+...|.+.|++..|+..|-.-..++...+..++......|...++ |
T Consensus 72 fi~~ai~WS~~~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~~~~~~e~----------d 141 (260)
T PF04190_consen 72 FIKAAIKWSKFGSYKFGDPELHHLLAEKLWKEGNYYEAERHFLLGTDPSAFAYVMLLEEWSTKGYPSEA----------D 141 (260)
T ss_dssp HHHHHHHHHHTSS-TT--HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHHHHHTSS--H----------H
T ss_pred HHHHHHHHHccCCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHhcCChhHHHHHHHHHHHHHhcCCcch----------h
Confidence 222222 222 2235566777777777777777777666554433333332233332222322222 2
Q ss_pred hhHHHHHHHHHHhcCCchHHHHHHHHHHHC
Q 038200 184 VVSWNIMISGYSKSGNPGCSLKLFREMMKS 213 (523)
Q Consensus 184 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 213 (523)
...-.++ --|.-.++...|...+....+.
T Consensus 142 lfi~RaV-L~yL~l~n~~~A~~~~~~f~~~ 170 (260)
T PF04190_consen 142 LFIARAV-LQYLCLGNLRDANELFDTFTSK 170 (260)
T ss_dssp HHHHHHH-HHHHHTTBHHHHHHHHHHHHHH
T ss_pred HHHHHHH-HHHHHhcCHHHHHHHHHHHHHH
Confidence 2222222 2344556677776666555543
No 401
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=65.93 E-value=33 Score=30.86 Aligned_cols=60 Identities=12% Similarity=0.044 Sum_probs=42.8
Q ss_pred cHHHHHHHHHccCCchHHHHHHHHHHHhCCCCCchHHHHHHHHHHccCChHHHHHHHhhcC
Q 038200 89 TFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMS 149 (523)
Q Consensus 89 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 149 (523)
+++.....|..+|.+.+|.++.+..+... +.+...+-.|+..++..||--.|.+-++.+.
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 34556677778888888888888877764 4467777778888888887666666665553
No 402
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=65.90 E-value=88 Score=27.01 Aligned_cols=52 Identities=10% Similarity=0.054 Sum_probs=25.8
Q ss_pred hhhhhhcCChHHHHHHHHhcCC---CChHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 038200 261 IDLYSKCQKVEVAQRVFDSMAD---RNLVCWNAMILGHCIHGKPEEGIKLFTALV 312 (523)
Q Consensus 261 ~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 312 (523)
++.+.+.+.+.+++...+.-.+ .|......+++.||-.|++++|..-++-.-
T Consensus 8 ~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a 62 (273)
T COG4455 8 ISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAA 62 (273)
T ss_pred HHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHh
Confidence 3344455555555555544322 234455555555555555555555444433
No 403
>PRK10941 hypothetical protein; Provisional
Probab=65.84 E-value=32 Score=31.00 Aligned_cols=64 Identities=11% Similarity=-0.049 Sum_probs=45.3
Q ss_pred HHHHHHHcCCChHHHHHHHHhCCCCCCCCCch-HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChh
Q 038200 366 CMANLYAGAELTEEAEEILRKMPEDNDNMSFE-SIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFS 433 (523)
Q Consensus 366 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 433 (523)
.|-.+|.+.++++.|+++.+.+.. +.|+ +.-+.--.-.|.+.|-+..|..-++..++..|+++.
T Consensus 186 nLK~~~~~~~~~~~AL~~~e~ll~----l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~ 250 (269)
T PRK10941 186 TLKAALMEEKQMELALRASEALLQ----FDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPI 250 (269)
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHH----hCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchh
Confidence 455667778888888888887774 3443 444555555677888888888888888887777664
No 404
>PF13934 ELYS: Nuclear pore complex assembly
Probab=64.62 E-value=98 Score=27.09 Aligned_cols=101 Identities=8% Similarity=0.033 Sum_probs=50.4
Q ss_pred HHHHHHHHH--ccCCchHHHHHHHHHHHhCCCCCchHHHHHHHHHHccCChHHHHHHHhhcCCC--CcchHHHHHHHHHh
Q 038200 90 FVSLFGSCA--KTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPR--DLISWNSIVSGHVR 165 (523)
Q Consensus 90 ~~~ll~~~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~ll~~~~~ 165 (523)
|...+.++. ..+++++|.+.+-. +......-.-++.++...|+.+.|..+++...++ +...-..++.. ..
T Consensus 79 ~~~~~~g~W~LD~~~~~~A~~~L~~-----ps~~~~~~~~Il~~L~~~~~~~lAL~y~~~~~p~l~s~~~~~~~~~~-La 152 (226)
T PF13934_consen 79 YIKFIQGFWLLDHGDFEEALELLSH-----PSLIPWFPDKILQALLRRGDPKLALRYLRAVGPPLSSPEALTLYFVA-LA 152 (226)
T ss_pred HHHHHHHHHHhChHhHHHHHHHhCC-----CCCCcccHHHHHHHHHHCCChhHHHHHHHhcCCCCCCHHHHHHHHHH-HH
Confidence 455555554 33455555554411 1111122224666666677777777777776543 22222222333 45
Q ss_pred cCCHHHHHHHHhcCCCCC-hhHHHHHHHHHHh
Q 038200 166 SGDMSAAHELFDIMPERN-VVSWNIMISGYSK 196 (523)
Q Consensus 166 ~~~~~~a~~~~~~~~~~~-~~~~~~li~~~~~ 196 (523)
++.+.+|...-+...++. ...+..++..+..
T Consensus 153 ~~~v~EAf~~~R~~~~~~~~~l~e~l~~~~~~ 184 (226)
T PF13934_consen 153 NGLVTEAFSFQRSYPDELRRRLFEQLLEHCLE 184 (226)
T ss_pred cCCHHHHHHHHHhCchhhhHHHHHHHHHHHHH
Confidence 567777766666655432 3345555554443
No 405
>PHA02875 ankyrin repeat protein; Provisional
Probab=63.95 E-value=1.5e+02 Score=28.85 Aligned_cols=13 Identities=8% Similarity=0.023 Sum_probs=6.9
Q ss_pred HHHHHHHHHHhCC
Q 038200 303 EGIKLFTALVNGT 315 (523)
Q Consensus 303 ~a~~~~~~m~~~~ 315 (523)
+..+-++.|....
T Consensus 298 ~C~~ei~~mk~~~ 310 (413)
T PHA02875 298 KCIIELRRIKSEK 310 (413)
T ss_pred HHHHHHHHHHhhc
Confidence 4455556665543
No 406
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=63.16 E-value=1.3e+02 Score=28.05 Aligned_cols=119 Identities=8% Similarity=0.081 Sum_probs=67.6
Q ss_pred HHHHHHHHHHHhCCCCCCCcCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhHhcCCCCChHHHHHHHHHHHc---CCChH
Q 038200 302 EEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAG---AELTE 378 (523)
Q Consensus 302 ~~a~~~~~~m~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~ 378 (523)
+.-+.++++.++.+ +-+......++..+.+..+.+...+-|+++... .+-+...|...++.... .-.++
T Consensus 48 E~klsilerAL~~n------p~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~--~~~~~~LW~~yL~~~q~~~~~f~v~ 119 (321)
T PF08424_consen 48 ERKLSILERALKHN------PDSERLLLGYLEEGEKVWDSEKLAKKWEELLFK--NPGSPELWREYLDFRQSNFASFTVS 119 (321)
T ss_pred HHHHHHHHHHHHhC------CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--CCCChHHHHHHHHHHHHHhccCcHH
Confidence 45566777777754 234556666777777777777777778887773 33356666665554433 22344
Q ss_pred HHHHHHHhCCCC----CCCC------Cc--hH---HHHHHHHHHHHhcCCHHHHHHHHHHHhhcC
Q 038200 379 EAEEILRKMPED----NDNM------SF--ES---IMWVSLLSLCRFQGAVAMVERLAKSFVDMD 428 (523)
Q Consensus 379 ~A~~~~~~~~~~----~~~~------~~--~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 428 (523)
....+|.+.... ..+. .+ +. .++..+...+...|-.+.|..+++.+++++
T Consensus 120 ~~~~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n 184 (321)
T PF08424_consen 120 DVRDVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFN 184 (321)
T ss_pred HHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHH
Confidence 444444332211 0011 11 11 233333344567888888888888888854
No 407
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=63.16 E-value=54 Score=24.72 Aligned_cols=40 Identities=8% Similarity=0.061 Sum_probs=23.8
Q ss_pred HHHHHHHHhhcCCCChhhHHHHHHHHHhcCChhHHHHHHH
Q 038200 417 VERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRE 456 (523)
Q Consensus 417 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 456 (523)
+.+.+.+...+.|.....+..|+.-+...-.|+++..--+
T Consensus 63 sve~~s~a~~Lsp~~A~~L~~la~~l~s~~~Ykk~v~kak 102 (111)
T PF04781_consen 63 SVECFSRAVELSPDSAHSLFELASQLGSVKYYKKAVKKAK 102 (111)
T ss_pred hHHHHHHHhccChhHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 4556666777777666556666655555555555554444
No 408
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=63.05 E-value=31 Score=29.24 Aligned_cols=32 Identities=25% Similarity=0.121 Sum_probs=18.1
Q ss_pred CCCChHHHHHHHHHHHcCCChHHHHHHHHhCC
Q 038200 357 IKPNFAHYWCMANLYAGAELTEEAEEILRKMP 388 (523)
Q Consensus 357 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 388 (523)
..|++..|..++.++...|+.++|.++.+++.
T Consensus 140 ~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~ 171 (193)
T PF11846_consen 140 RRPDPNVYQRYALALALLGDPEEARQWLARAR 171 (193)
T ss_pred hCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34555555555555555555555555555554
No 409
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=63.04 E-value=40 Score=25.16 Aligned_cols=52 Identities=13% Similarity=0.048 Sum_probs=25.0
Q ss_pred HHHHhCCCchHHHHHHHHHHHCCCCCCcccHHHHHHHHHccCCchHHHHHHHHHHHhC
Q 038200 60 KAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNG 117 (523)
Q Consensus 60 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 117 (523)
..+.++|+|++|+ .. - ...-.||...|..|-. .+.|--+++...+.++...|
T Consensus 48 ~sLmNrG~Yq~AL--l~-~-~~~~~pdL~p~~AL~a--~klGL~~~~e~~l~rla~~g 99 (116)
T PF09477_consen 48 SSLMNRGDYQEAL--LL-P-QCHCYPDLEPWAALCA--WKLGLASALESRLTRLASSG 99 (116)
T ss_dssp HHHHHTT-HHHHH--HH-H-TTS--GGGHHHHHHHH--HHCT-HHHHHHHHHHHCT-S
T ss_pred HHHHhhHHHHHHH--Hh-c-ccCCCccHHHHHHHHH--HhhccHHHHHHHHHHHHhCC
Confidence 4566777777772 11 1 1122566655554433 35666666666666554444
No 410
>PHA02875 ankyrin repeat protein; Provisional
Probab=62.08 E-value=1.6e+02 Score=28.61 Aligned_cols=15 Identities=20% Similarity=0.149 Sum_probs=8.0
Q ss_pred ccCCchhHHHHhccC
Q 038200 33 DFGSPDYTVLVFKCI 47 (523)
Q Consensus 33 ~~g~~~~A~~~~~~~ 47 (523)
+.|+++.+..+++.-
T Consensus 11 ~~g~~~iv~~Ll~~g 25 (413)
T PHA02875 11 LFGELDIARRLLDIG 25 (413)
T ss_pred HhCCHHHHHHHHHCC
Confidence 445555555555543
No 411
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=62.00 E-value=31 Score=25.12 Aligned_cols=54 Identities=13% Similarity=0.067 Sum_probs=37.3
Q ss_pred HHhcCCHHHHHHHHHHHhhcCCC----C-----hhhHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 038200 408 CRFQGAVAMVERLAKSFVDMDPQ----D-----FSRYQFLLNVYAVAGQWEDVARVRELMKKR 461 (523)
Q Consensus 408 ~~~~g~~~~a~~~~~~~~~~~p~----~-----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 461 (523)
..+.|++..|.+.+.+..+.... . ..+...++......|++++|...+++..+.
T Consensus 8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~ 70 (94)
T PF12862_consen 8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRL 70 (94)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 45678888887766666652211 1 234455777888899999999999987653
No 412
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=60.58 E-value=1.6e+02 Score=28.09 Aligned_cols=29 Identities=7% Similarity=-0.152 Sum_probs=18.1
Q ss_pred CCChhHHHHHHHHhhccCCchhHHHHhcc
Q 038200 18 FNNSFWTINLLKHSADFGSPDYTVLVFKC 46 (523)
Q Consensus 18 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 46 (523)
|-+..++-++-.++...|+.+.|.++.++
T Consensus 37 PyHidtLlqls~v~~~~gd~~~A~~lleR 65 (360)
T PF04910_consen 37 PYHIDTLLQLSEVYRQQGDHAQANDLLER 65 (360)
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 35555666666666777776666666554
No 413
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=60.34 E-value=25 Score=29.81 Aligned_cols=36 Identities=6% Similarity=-0.021 Sum_probs=20.3
Q ss_pred CCchHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCC
Q 038200 394 MSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDP 429 (523)
Q Consensus 394 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p 429 (523)
..|++.++..++.++...|+.++|.+..+++...-|
T Consensus 140 ~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 140 RRPDPNVYQRYALALALLGDPEEARQWLARARRLYP 175 (193)
T ss_pred hCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 345555555555555555555555555555555555
No 414
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=59.04 E-value=21 Score=30.85 Aligned_cols=51 Identities=10% Similarity=0.085 Sum_probs=24.8
Q ss_pred hcCcHHHHHHHHHHhhHhcCCCCChHHHHHHHHHHHcCCChHHHHHHHHhCCC
Q 038200 337 RAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPE 389 (523)
Q Consensus 337 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 389 (523)
+.++.+.+.+++.++.+ -.+-....|-.+...-.++|+++.|.+.+++..+
T Consensus 7 ~~~D~~aaaely~qal~--lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ 57 (287)
T COG4976 7 ESGDAEAAAELYNQALE--LAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLE 57 (287)
T ss_pred ccCChHHHHHHHHHHhh--cCchhhhhhhhcchhhhhcccHHHHHHHHHHHHc
Confidence 44455555555555544 2222344444455444555555555555555543
No 415
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=58.76 E-value=54 Score=24.67 Aligned_cols=27 Identities=15% Similarity=0.356 Sum_probs=22.1
Q ss_pred HHHHHHHHHHhcCCchHHHHHHHHHHH
Q 038200 186 SWNIMISGYSKSGNPGCSLKLFREMMK 212 (523)
Q Consensus 186 ~~~~li~~~~~~~~~~~a~~~~~~m~~ 212 (523)
-|..|+..|...|..++|++++.++..
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 477788888888888888888888766
No 416
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=58.57 E-value=60 Score=26.02 Aligned_cols=63 Identities=6% Similarity=-0.018 Sum_probs=43.5
Q ss_pred HHHHHHHHCCCCCCcccHHHHHHHHHccCCchHHHHHHHHHHHhCCCCCchHHHHHHHHHHccC
Q 038200 73 VFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFG 136 (523)
Q Consensus 73 ~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 136 (523)
++.+.+.+.|++++.. -..++..+...++.-.|.++++.+.+.++..+..|.-.-++.+...|
T Consensus 7 ~~~~~lk~~glr~T~q-R~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~G 69 (145)
T COG0735 7 DAIERLKEAGLRLTPQ-RLAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAG 69 (145)
T ss_pred HHHHHHHHcCCCcCHH-HHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCC
Confidence 3445566777766654 45567777777777889999999988887776665555556666555
No 417
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=58.48 E-value=55 Score=33.69 Aligned_cols=102 Identities=9% Similarity=0.067 Sum_probs=58.6
Q ss_pred HHHHHHHHHHHhhcCcHHHHHHHHHHhhHhcCCCCCh----------HHHHHHHHHHHcCCChHHHHHHHHhCCCCCCCC
Q 038200 325 EITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNF----------AHYWCMANLYAGAELTEEAEEILRKMPEDNDNM 394 (523)
Q Consensus 325 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 394 (523)
..+...++-.|....+++...++.+.++.. ||. ..|..-++--.+-|+-++|+...-.+++....+
T Consensus 201 ~d~V~nlmlSyRDvQdY~amirLVe~Lk~i----P~t~~vve~~nv~f~YaFALNRRNr~GDRakAL~~~l~lve~eg~v 276 (1226)
T KOG4279|consen 201 PDTVSNLMLSYRDVQDYDAMIRLVEDLKRI----PDTLKVVETHNVRFHYAFALNRRNRPGDRAKALNTVLPLVEKEGPV 276 (1226)
T ss_pred HHHHHHHHhhhccccchHHHHHHHHHHHhC----cchhhhhccCceEEEeeehhcccCCCccHHHHHHHHHHHHHhcCCC
Confidence 345556666666677777777776666542 211 122222233335567777777776666655556
Q ss_pred CchHH-----HHHHHH--HHHHhcCCHHHHHHHHHHHhhcCCC
Q 038200 395 SFESI-----MWVSLL--SLCRFQGAVAMVERLAKSFVDMDPQ 430 (523)
Q Consensus 395 ~~~~~-----~~~~l~--~~~~~~g~~~~a~~~~~~~~~~~p~ 430 (523)
.||.. +|--+. ..|-..+..+.|..+|+++.+..|.
T Consensus 277 apDm~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFeveP~ 319 (1226)
T KOG4279|consen 277 APDMYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFEVEPL 319 (1226)
T ss_pred CCceeeeechhhhhhhhccCCcchhhHHHHHHHHHHHhccCch
Confidence 66642 222221 1244555677788888888887775
No 418
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=58.10 E-value=46 Score=30.17 Aligned_cols=47 Identities=6% Similarity=0.012 Sum_probs=23.1
Q ss_pred hcCCHHHHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChhHHHHHHH
Q 038200 410 FQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRE 456 (523)
Q Consensus 410 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 456 (523)
+.|+.++|..+|+.+..+.|.++.++..++......++.-+|-.+|-
T Consensus 128 ~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~ 174 (472)
T KOG3824|consen 128 KDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYV 174 (472)
T ss_pred hccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhh
Confidence 44555555555555555555555555554444444444444444433
No 419
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=58.08 E-value=62 Score=28.04 Aligned_cols=64 Identities=11% Similarity=0.111 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHhcCCHH-------HHHHHHHHHhhcC--C----CChhhHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 038200 399 IMWVSLLSLCRFQGAVA-------MVERLAKSFVDMD--P----QDFSRYQFLLNVYAVAGQWEDVARVRELMKKRR 462 (523)
Q Consensus 399 ~~~~~l~~~~~~~g~~~-------~a~~~~~~~~~~~--p----~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 462 (523)
.++..+...|...|+.+ .|...|+++.+.+ | +...+...++.++.+.|++++|.+.|.++...+
T Consensus 119 ~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~ 195 (214)
T PF09986_consen 119 GLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSK 195 (214)
T ss_pred HHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCC
Confidence 34444455566666644 4444444444422 2 134566678888899999999999999987653
No 420
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=57.51 E-value=83 Score=26.28 Aligned_cols=14 Identities=7% Similarity=-0.024 Sum_probs=8.8
Q ss_pred HHHHHHHHHHhhHh
Q 038200 341 LTEGRKYFRQMIDF 354 (523)
Q Consensus 341 ~~~a~~~~~~~~~~ 354 (523)
.+.|+.+|+.+.+.
T Consensus 85 LESAl~v~~~I~~E 98 (200)
T cd00280 85 LESALMVLESIEKE 98 (200)
T ss_pred HHHHHHHHHHHHHh
Confidence 55666666666664
No 421
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=56.51 E-value=40 Score=23.99 Aligned_cols=33 Identities=15% Similarity=0.262 Sum_probs=15.2
Q ss_pred CCHHHHHHHHhcCCCCChhHHHHHHHHHHhcCC
Q 038200 167 GDMSAAHELFDIMPERNVVSWNIMISGYSKSGN 199 (523)
Q Consensus 167 ~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~ 199 (523)
.+.+.+.++++.++..+..+|..+..++...|.
T Consensus 44 tr~~q~~~LLd~L~~RG~~AF~~F~~aL~~~~~ 76 (84)
T cd08326 44 SRRDQARQLLIDLETRGKQAFPAFLSALRETGQ 76 (84)
T ss_pred CHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCc
Confidence 334444444444444444444444444444443
No 422
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=56.29 E-value=50 Score=21.01 Aligned_cols=35 Identities=26% Similarity=0.405 Sum_probs=22.8
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCCCcCCCHHHHHHHH
Q 038200 291 MILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVI 332 (523)
Q Consensus 291 li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~ll 332 (523)
+.-++.+.|++++|.+..+.+.+ +.|+..-...|-
T Consensus 7 lAig~ykl~~Y~~A~~~~~~lL~-------~eP~N~Qa~~L~ 41 (53)
T PF14853_consen 7 LAIGHYKLGEYEKARRYCDALLE-------IEPDNRQAQSLK 41 (53)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHH-------HTTS-HHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHh-------hCCCcHHHHHHH
Confidence 45567788888888888888887 567765444443
No 423
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=55.45 E-value=38 Score=20.95 Aligned_cols=32 Identities=6% Similarity=0.142 Sum_probs=18.9
Q ss_pred ccCCchHHHHHHHHHHHhCCCCCchHHHHHHH
Q 038200 99 KTGCVERGGMCHGLALKNGVDFELPVMNSLIN 130 (523)
Q Consensus 99 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 130 (523)
+.|-..++..+++.|.+.|+..+...+..++.
T Consensus 14 ~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 14 RRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 44555566666666666666666655555543
No 424
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=55.07 E-value=22 Score=32.16 Aligned_cols=81 Identities=6% Similarity=-0.020 Sum_probs=57.2
Q ss_pred CCCChHHHHHHHHHHHcCCChHHHHHHHHhCCCCCCCCCchHHHHHHHH-HHHHhcCCHHHHHHHHHHHhhcCCCChhhH
Q 038200 357 IKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLL-SLCRFQGAVAMVERLAKSFVDMDPQDFSRY 435 (523)
Q Consensus 357 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 435 (523)
+.-|+..|...+.-..+.|.+.+...++.+.... .+.+...|.... .-+...++++.+..++.+.+.++|++|..|
T Consensus 103 ff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~k---hP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~iw 179 (435)
T COG5191 103 FFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTK---HPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRIW 179 (435)
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---CCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchHH
Confidence 3446666666666556677788888888888754 344555554422 246778999999999999999999998887
Q ss_pred HHHHH
Q 038200 436 QFLLN 440 (523)
Q Consensus 436 ~~l~~ 440 (523)
....+
T Consensus 180 ~eyfr 184 (435)
T COG5191 180 IEYFR 184 (435)
T ss_pred HHHHH
Confidence 75543
No 425
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=54.96 E-value=2e+02 Score=29.34 Aligned_cols=89 Identities=9% Similarity=-0.004 Sum_probs=65.3
Q ss_pred HHcCCChHHHHHHHHhCCCCCCCCCch------HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhhHHHHHHHHHh
Q 038200 371 YAGAELTEEAEEILRKMPEDNDNMSFE------SIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAV 444 (523)
Q Consensus 371 ~~~~g~~~~A~~~~~~~~~~~~~~~~~------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 444 (523)
..+..++..+.+.|..-..- +..| ......+.-+|....+.+.|.++++.+.+.+|.++-.-..+..+...
T Consensus 364 ~F~~~~Y~~s~~~y~~Sl~~---i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~~~~~~~ 440 (872)
T KOG4814|consen 364 LFKMEKYVVSIRFYKLSLKD---IISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLMLQSFLA 440 (872)
T ss_pred HHHHHHHHHHHHHHHHHHHh---ccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHH
Confidence 34567788888888764421 2222 23445555567778889999999999999999888777778888888
Q ss_pred cCChhHHHHHHHHHHhCC
Q 038200 445 AGQWEDVARVRELMKKRR 462 (523)
Q Consensus 445 ~g~~~~A~~~~~~m~~~~ 462 (523)
.|.-++|+......+..-
T Consensus 441 E~~Se~AL~~~~~~~s~~ 458 (872)
T KOG4814|consen 441 EDKSEEALTCLQKIKSSE 458 (872)
T ss_pred hcchHHHHHHHHHHHhhh
Confidence 999999998887776543
No 426
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=53.68 E-value=1.5e+02 Score=25.77 Aligned_cols=94 Identities=17% Similarity=0.106 Sum_probs=51.2
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcCC---CHHH--HHHHHHHHhhcCcHHHHHHHHHHhhHhcCCCCCh
Q 038200 287 CWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISP---DEIT--FIGVICACVRAELLTEGRKYFRQMIDFYKIKPNF 361 (523)
Q Consensus 287 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~p---~~~~--~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 361 (523)
-.|.|+--|.-+..+.+|.+.|..-. + +.| +..+ =..-|......|+.+.|.+..+.+... -+..|.
T Consensus 28 d~n~LVmnylv~eg~~EaA~~Fa~e~--~-----i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~Pe-iLd~n~ 99 (228)
T KOG2659|consen 28 DLNRLVMNYLVHEGYVEAAEKFAKES--G-----IKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLNPE-ILDTNR 99 (228)
T ss_pred hHHHHHHHHHHhccHHHHHHHhcccc--C-----CCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhChH-HHccch
Confidence 34555555555555555655554322 2 222 2222 234455567778888887777776554 444444
Q ss_pred HHHHHHHH----HHHcCCChHHHHHHHHhCC
Q 038200 362 AHYWCMAN----LYAGAELTEEAEEILRKMP 388 (523)
Q Consensus 362 ~~~~~l~~----~~~~~g~~~~A~~~~~~~~ 388 (523)
..+-.|.. -+.+.|..++|+++.+.=.
T Consensus 100 ~l~F~Lq~q~lIEliR~~~~eeal~F~q~~L 130 (228)
T KOG2659|consen 100 ELFFHLQQLHLIELIREGKTEEALEFAQTKL 130 (228)
T ss_pred hHHHHHHHHHHHHHHHhhhHHHHHHHHHHHc
Confidence 33322222 2456777777777776544
No 427
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=52.09 E-value=1e+02 Score=23.25 Aligned_cols=27 Identities=4% Similarity=0.171 Sum_probs=19.2
Q ss_pred cHHHHHHHHHhCCCchHHHHHHHHHHH
Q 038200 54 CVNAVIKAYSNSCVPDQGVVFYLQMIK 80 (523)
Q Consensus 54 ~~~~ll~~~~~~~~~~~a~~~~~~m~~ 80 (523)
-|..|+..|-..|..++|++++.++..
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 466777777777777777777776665
No 428
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=52.06 E-value=2.3e+02 Score=27.47 Aligned_cols=359 Identities=8% Similarity=0.017 Sum_probs=0.0
Q ss_pred HHHHHHhhccCCchhHHHHhccCCCCCcccHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCcccHHHHHHHHHccC---
Q 038200 25 INLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTG--- 101 (523)
Q Consensus 25 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~--- 101 (523)
|-.+.-|...|+..+|-+...+ ...+.+.....-+++.-.+.-..|..+.-.+...+...+..+-+.+..++.+.+
T Consensus 218 n~~l~eyv~~getrea~rciR~-L~vsffhhe~vkralv~ame~~~ae~l~l~llke~~e~glissSq~~kGfsr~~~sl 296 (645)
T KOG0403|consen 218 NGNLIEYVEIGETREACRCIRE-LGVSFFHHEGVKRALVDAMEDALAEGLTLKLLKEGREEGLISSSQMGKGFSRKGGSL 296 (645)
T ss_pred HHHHHHHHHcccHHHHHHHHHH-hCCCchhhHHHHHHHHHHHhhhhcccceeccchhhhhhcchhhhccccCchhhcccc
Q ss_pred -----CchHHHHHHHHHHHhCCCCCchHHHHHHHHHHccCChHHHHHHHhhcCCCCcchHHHHHHHHHhcCCHHHHHHHH
Q 038200 102 -----CVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELF 176 (523)
Q Consensus 102 -----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~ 176 (523)
+...|...++.+.-..+.-+-..-+++-..-...|+.+. .+.|++ ....+|+-|...|+..+..+.+
T Consensus 297 ddl~ldiP~a~~~~esiv~Ka~s~gwl~e~s~k~~s~~~g~~e~-~r~Fkk-------~~~~IIqEYFlsgDt~Evi~~L 368 (645)
T KOG0403|consen 297 DDLVLDIPSARYDFESIVPKAPSGGWLDENSFKETSVLPGDSEN-LRAFKK-------DLTPIIQEYFLSGDTPEVIRSL 368 (645)
T ss_pred ccccccCcchhhhhhhhcccCCCCCccchhhhcccccCCCcchH-HHHHHH-------hhHHHHHHHHhcCChHHHHHHH
Q ss_pred hcCCC---CChhHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHH----HHHHHHHHHHHcC
Q 038200 177 DIMPE---RNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFN----EGRSVHGYTVRTS 249 (523)
Q Consensus 177 ~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~----~a~~~~~~~~~~~ 249 (523)
+.+.- .....-..+--+.-+...-.+.-.+|-.-....+-++...-+.....+-...+.. .|-+.+...+.+.
T Consensus 369 ~DLn~~E~~~~f~k~lITLAldrK~~ekEMasvllS~L~~e~fsteDv~~~F~mLLesaedtALD~p~a~~elalFlARA 448 (645)
T KOG0403|consen 369 RDLNLPEYNPGFLKLLITLALDRKNSEKEMASVLLSDLHGEVFSTEDVEKGFDMLLESAEDTALDIPRASQELALFLARA 448 (645)
T ss_pred HHcCCccccchHHHHHHHHHhccchhHHHHHHHHHHHhhcccCCHHHHHHHHHHHHhcchhhhccccccHHHHHHHHHHH
Q ss_pred CCCchHHHHHHhhhhhhcCChHHHHHHHHhcCC-------------------------CChHHHHHHHHHHHhcCChHHH
Q 038200 250 LKPNIILDTALIDLYSKCQKVEVAQRVFDSMAD-------------------------RNLVCWNAMILGHCIHGKPEEG 304 (523)
Q Consensus 250 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-------------------------~~~~~~~~li~~~~~~g~~~~a 304 (523)
+--++-.-..|=....+..-...+.+.++.... .-..-...|+.-|...|+..+|
T Consensus 449 ViDdVLap~~leei~~~lp~~s~g~et~~~ArsLlsar~aGeRllr~WGgGG~g~sVed~kdkI~~LLeEY~~~GdisEA 528 (645)
T KOG0403|consen 449 VIDDVLAPTNLEEISGTLPPVSQGRETLDKARSLLSARHAGERLLRVWGGGGGGWSVEDAKDKIDMLLEEYELSGDISEA 528 (645)
T ss_pred HhhcccccCcHHHHcCCCCCchhhHHHHHHHHHHHHHhhcccchhheecCCCCcchHHHHHHHHHHHHHHHHhccchHHH
Q ss_pred HHHHHHHHhCCCCCCCcCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhHhcCCCCChHHHHHHHHHHHcCCChHHHHHHH
Q 038200 305 IKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEIL 384 (523)
Q Consensus 305 ~~~~~~m~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 384 (523)
...++++--- .--....+.+++.+..+.|+-...+.+++..-+. ...|-+.|-.+|.+ ++
T Consensus 529 ~~CikeLgmP------fFhHEvVkkAlVm~mEkk~d~t~~ldLLk~cf~s-----glIT~nQMtkGf~R---------V~ 588 (645)
T KOG0403|consen 529 CHCIKELGMP------FFHHEVVKKALVMVMEKKGDSTMILDLLKECFKS-----GLITTNQMTKGFER---------VY 588 (645)
T ss_pred HHHHHHhCCC------cchHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhc-----CceeHHHhhhhhhh---------hh
Q ss_pred HhCCCCCCCCCchHHHHHHHHHHHHhcC
Q 038200 385 RKMPEDNDNMSFESIMWVSLLSLCRFQG 412 (523)
Q Consensus 385 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g 412 (523)
+.+......++.....++....-|...|
T Consensus 589 dsl~DlsLDvPna~ekf~~~Ve~~~~~G 616 (645)
T KOG0403|consen 589 DSLPDLSLDVPNAYEKFERYVEECFQNG 616 (645)
T ss_pred ccCcccccCCCcHHHHHHHHHHHHHHcC
No 429
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=52.04 E-value=1.1e+02 Score=24.11 Aligned_cols=67 Identities=7% Similarity=-0.038 Sum_probs=48.6
Q ss_pred CchHHHHHHHHHHHHhcC---CHHHHHHHHHHHhh-cCCC-ChhhHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 038200 395 SFESIMWVSLLSLCRFQG---AVAMVERLAKSFVD-MDPQ-DFSRYQFLLNVYAVAGQWEDVARVRELMKKR 461 (523)
Q Consensus 395 ~~~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~-~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 461 (523)
.+...+-..+..++.+.. +..+...+++.+.+ -.|. .......|+-++.+.|+|+++.++.+.+.+.
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~ 100 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLET 100 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhh
Confidence 444445555566665554 47788888988886 4443 4456677888999999999999999988664
No 430
>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain. These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....
Probab=51.74 E-value=68 Score=22.63 Aligned_cols=50 Identities=14% Similarity=0.088 Sum_probs=21.5
Q ss_pred hccCCchhHHHHhccCCCCCcccHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCc
Q 038200 32 ADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNS 87 (523)
Q Consensus 32 ~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~ 87 (523)
++.|+++-...+++.-...+. -+..+...+..|+ .++++.+.+.|..++.
T Consensus 5 ~~~~~~~~~~~ll~~~~~~~~--~~~~l~~A~~~~~----~~~~~~Ll~~g~~~~~ 54 (89)
T PF12796_consen 5 AQNGNLEILKFLLEKGADINL--GNTALHYAAENGN----LEIVKLLLENGADINS 54 (89)
T ss_dssp HHTTTHHHHHHHHHTTSTTTS--SSBHHHHHHHTTT----HHHHHHHHHTTTCTT-
T ss_pred HHcCCHHHHHHHHHCcCCCCC--CCCHHHHHHHcCC----HHHHHHHHHhcccccc
Confidence 445555555555553322222 1113333344444 2444455555555444
No 431
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=51.62 E-value=48 Score=21.87 Aligned_cols=25 Identities=16% Similarity=0.395 Sum_probs=12.5
Q ss_pred HHHHHHHhhcCcHHHHHHHHHHhhH
Q 038200 329 IGVICACVRAELLTEGRKYFRQMID 353 (523)
Q Consensus 329 ~~ll~~~~~~~~~~~a~~~~~~~~~ 353 (523)
..+|.++...|++++|.++++.+.+
T Consensus 27 LqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 27 LQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3445555555555555555555544
No 432
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=51.36 E-value=33 Score=29.70 Aligned_cols=60 Identities=18% Similarity=0.224 Sum_probs=38.0
Q ss_pred HHHcCCChHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCh
Q 038200 370 LYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDF 432 (523)
Q Consensus 370 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~ 432 (523)
+..+.++.+.|.+++.++.+. .+.....|..+...--+.|+.+.|.+.+++..+++|++.
T Consensus 4 ~~~~~~D~~aaaely~qal~l---ap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~ 63 (287)
T COG4976 4 MLAESGDAEAAAELYNQALEL---APEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDH 63 (287)
T ss_pred hhcccCChHHHHHHHHHHhhc---CchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCcccc
Confidence 345566777777777776642 222355666666666667777777777777777777653
No 433
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=51.01 E-value=93 Score=22.55 Aligned_cols=21 Identities=14% Similarity=0.009 Sum_probs=12.1
Q ss_pred HHHhhcCcHHHHHHHHHHhhH
Q 038200 333 CACVRAELLTEGRKYFRQMID 353 (523)
Q Consensus 333 ~~~~~~~~~~~a~~~~~~~~~ 353 (523)
......|..++|...+++..+
T Consensus 49 ~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 49 ELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHHHHhCCHHHHHHHHHHHHH
Confidence 344455666666666666554
No 434
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=50.97 E-value=63 Score=28.75 Aligned_cols=52 Identities=10% Similarity=-0.004 Sum_probs=22.0
Q ss_pred HHHHhhcCcHHHHHHHHHHhhHhcC----CCCChHHHHHHHHHHHcCCChHHHHHH
Q 038200 332 ICACVRAELLTEGRKYFRQMIDFYK----IKPNFAHYWCMANLYAGAELTEEAEEI 383 (523)
Q Consensus 332 l~~~~~~~~~~~a~~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~g~~~~A~~~ 383 (523)
..-|.+.|++++|.++|+.+...|. ..+...+...+..++.+.|+.+..+.+
T Consensus 185 A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~ 240 (247)
T PF11817_consen 185 AEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTT 240 (247)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 3344445555555555555433221 112233333444444444544444443
No 435
>PRK13342 recombination factor protein RarA; Reviewed
Probab=50.61 E-value=2.5e+02 Score=27.38 Aligned_cols=97 Identities=10% Similarity=0.071 Sum_probs=48.4
Q ss_pred CCCHHHHHHHHHHHhccccHHHHHHHHHHHHHcCCCCchHHHHHHhhhhhhcCChHHHHHHHHhc---CCCChHHHHHHH
Q 038200 216 RGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSM---ADRNLVCWNAMI 292 (523)
Q Consensus 216 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~---~~~~~~~~~~li 292 (523)
..+......++..+ .|+...+..+++.+...+...+. +....++... ...+......++
T Consensus 173 ~i~~~al~~l~~~s--~Gd~R~aln~Le~~~~~~~~It~----------------~~v~~~~~~~~~~~d~~~~~~~~~i 234 (413)
T PRK13342 173 ELDDEALDALARLA--NGDARRALNLLELAALGVDSITL----------------ELLEEALQKRAARYDKDGDEHYDLI 234 (413)
T ss_pred CCCHHHHHHHHHhC--CCCHHHHHHHHHHHHHccCCCCH----------------HHHHHHHhhhhhccCCCccHHHHHH
Confidence 44445555554433 67777777777766543111111 1112222211 111222233344
Q ss_pred HHHHh---cCChHHHHHHHHHHHhCCCCCCCcCCCHHHHHHHHHHH
Q 038200 293 LGHCI---HGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICAC 335 (523)
Q Consensus 293 ~~~~~---~g~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~ll~~~ 335 (523)
+++.+ .++.+.|+.++.+|.+.| ..|....-..++.++
T Consensus 235 sa~~ks~rgsd~~aal~~l~~~l~~G-----~d~~~i~rrl~~~a~ 275 (413)
T PRK13342 235 SALHKSIRGSDPDAALYYLARMLEAG-----EDPLFIARRLVIIAS 275 (413)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcC-----CCHHHHHHHHHHHHH
Confidence 44443 478888888888888887 556544333333333
No 436
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=50.35 E-value=2.4e+02 Score=27.11 Aligned_cols=52 Identities=17% Similarity=0.138 Sum_probs=36.1
Q ss_pred CChhHHHHHHHHHHh---cCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccc
Q 038200 182 RNVVSWNIMISGYSK---SGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSA 233 (523)
Q Consensus 182 ~~~~~~~~li~~~~~---~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~ 233 (523)
++...+..+++++.+ ..+++.|+-++-+|.+.|-.|-...-..++-++-..|
T Consensus 244 k~gD~hYdliSA~hKSvRGSD~dAALyylARmi~~GeDp~yiARRlv~~AsEDIG 298 (436)
T COG2256 244 KDGDAHYDLISALHKSVRGSDPDAALYYLARMIEAGEDPLYIARRLVRIASEDIG 298 (436)
T ss_pred CCcchHHHHHHHHHHhhccCCcCHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcc
Confidence 455666667777765 4678888999999999886666666566655554444
No 437
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=50.17 E-value=2.4e+02 Score=27.05 Aligned_cols=59 Identities=12% Similarity=0.081 Sum_probs=43.0
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHhcCCC------CChhHHHHHHHHHHhcCCchHHHHHHHHHHHC
Q 038200 155 SWNSIVSGHVRSGDMSAAHELFDIMPE------RNVVSWNIMISGYSKSGNPGCSLKLFREMMKS 213 (523)
Q Consensus 155 ~~~~ll~~~~~~~~~~~a~~~~~~~~~------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 213 (523)
.+.-+...|..+|+++.|.+.|.+... ..+..|-.+|..-.-.|+|.....+..+..+.
T Consensus 152 a~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st 216 (466)
T KOG0686|consen 152 ALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAEST 216 (466)
T ss_pred HHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhC
Confidence 455666778888888888888888654 23456777777777788888888777776553
No 438
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=50.08 E-value=60 Score=20.07 Aligned_cols=34 Identities=21% Similarity=0.306 Sum_probs=20.6
Q ss_pred HHhcCCchHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 038200 194 YSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLT 227 (523)
Q Consensus 194 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~ 227 (523)
..+.|-.+++..++++|.+.|+..+...|..++.
T Consensus 12 Ak~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 12 AKRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 3455666666666666666666666665555543
No 439
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=49.66 E-value=34 Score=31.01 Aligned_cols=42 Identities=26% Similarity=0.298 Sum_probs=29.2
Q ss_pred CChhH-HHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHHHHH
Q 038200 182 RNVVS-WNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMA 223 (523)
Q Consensus 182 ~~~~~-~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~ 223 (523)
+|..+ |+..|....+.|++++|+.++++..+.|+.--..+|-
T Consensus 254 ~dTe~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFi 296 (303)
T PRK10564 254 NDTESYFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFI 296 (303)
T ss_pred chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHH
Confidence 34443 5678888888888888888888888887654444443
No 440
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=49.62 E-value=42 Score=22.14 Aligned_cols=26 Identities=8% Similarity=0.083 Sum_probs=15.1
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHH
Q 038200 434 RYQFLLNVYAVAGQWEDVARVRELMK 459 (523)
Q Consensus 434 ~~~~l~~~~~~~g~~~~A~~~~~~m~ 459 (523)
-...++.+|...|++++|.++++++.
T Consensus 25 NhLqvI~gllqlg~~~~a~eYi~~~~ 50 (62)
T PF14689_consen 25 NHLQVIYGLLQLGKYEEAKEYIKELS 50 (62)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 34455666666666666666666553
No 441
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=49.41 E-value=21 Score=32.77 Aligned_cols=119 Identities=16% Similarity=0.058 Sum_probs=85.2
Q ss_pred hhcCcHHHHHHHHHHhhHhcCCCCChHHHHHHHHHHHcCCChHHHHHHHHhCCCCCCCCCchHH-HHHHHHHHHHhcCCH
Q 038200 336 VRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESI-MWVSLLSLCRFQGAV 414 (523)
Q Consensus 336 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~ 414 (523)
...|.++.|++.|-..++ .-++....|..-..++.+.++...|++=+....+ +.||.. -|-.-..+-+..|++
T Consensus 125 ln~G~~~~ai~~~t~ai~--lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~e----in~Dsa~~ykfrg~A~rllg~~ 198 (377)
T KOG1308|consen 125 LNDGEFDTAIELFTSAIE--LNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIE----INPDSAKGYKFRGYAERLLGNW 198 (377)
T ss_pred hcCcchhhhhcccccccc--cCCchhhhcccccceeeeccCCchhhhhhhhhhc----cCcccccccchhhHHHHHhhch
Confidence 345789999999998887 4555667777777888899999999988887775 456532 233333456678999
Q ss_pred HHHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 038200 415 AMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKR 461 (523)
Q Consensus 415 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 461 (523)
++|...+..+.+++- +..+=..|-...-+++..++-...+++.++.
T Consensus 199 e~aa~dl~~a~kld~-dE~~~a~lKeV~p~a~ki~e~~~k~er~~~e 244 (377)
T KOG1308|consen 199 EEAAHDLALACKLDY-DEANSATLKEVFPNAGKIEEHRRKYERAREE 244 (377)
T ss_pred HHHHHHHHHHHhccc-cHHHHHHHHHhccchhhhhhchhHHHHHHHH
Confidence 999999999999887 3445555666666677777666666665543
No 442
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=49.40 E-value=3.6e+02 Score=28.84 Aligned_cols=51 Identities=10% Similarity=0.044 Sum_probs=33.7
Q ss_pred HHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHhcCCchHHHHHHHHHH
Q 038200 161 SGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMM 211 (523)
Q Consensus 161 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 211 (523)
+.|...|++++|.++-+.-+..=..++..-...|.+.+++..|-++|.++.
T Consensus 366 k~yLd~g~y~kAL~~ar~~p~~le~Vl~~qAdf~f~~k~y~~AA~~yA~t~ 416 (911)
T KOG2034|consen 366 KTYLDKGEFDKALEIARTRPDALETVLLKQADFLFQDKEYLRAAEIYAETL 416 (911)
T ss_pred HHHHhcchHHHHHHhccCCHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhh
Confidence 447778999999888766522111233334456777788888888888773
No 443
>KOG2758 consensus Translation initiation factor 3, subunit e (eIF-3e) [Translation, ribosomal structure and biogenesis]
Probab=48.88 E-value=73 Score=29.14 Aligned_cols=31 Identities=3% Similarity=0.076 Sum_probs=15.5
Q ss_pred cCCCHHHHHHHHHHHhhcCcHHHHHHHHHHh
Q 038200 321 ISPDEITFIGVICACVRAELLTEGRKYFRQM 351 (523)
Q Consensus 321 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 351 (523)
+-++......-+..+.+.+..+-+..++..+
T Consensus 31 iy~~keLle~k~~ll~~TNMiDy~md~~k~l 61 (432)
T KOG2758|consen 31 IYDEKELLEAKLQLLNKTNMIDYVMDTYKNL 61 (432)
T ss_pred cCCHHHHHHHHHHHHcccchHHHHHHHHhcc
Confidence 4444444444445555555555555555544
No 444
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=48.54 E-value=24 Score=27.50 Aligned_cols=33 Identities=21% Similarity=0.377 Sum_probs=24.9
Q ss_pred HHhcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 038200 194 YSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTA 228 (523)
Q Consensus 194 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~ 228 (523)
....|.-.+|..+|..|++.|-+||. |+.|+..
T Consensus 105 lR~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~ 137 (140)
T PF11663_consen 105 LRAYGSKTDAYAVFRKMLERGNPPDD--WDALLKE 137 (140)
T ss_pred hhhhccCCcHHHHHHHHHhCCCCCcc--HHHHHHH
Confidence 34567778899999999999988885 4555543
No 445
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=48.52 E-value=1.2e+02 Score=29.25 Aligned_cols=27 Identities=19% Similarity=0.332 Sum_probs=14.2
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHH
Q 038200 432 FSRYQFLLNVYAVAGQWEDVARVRELM 458 (523)
Q Consensus 432 ~~~~~~l~~~~~~~g~~~~A~~~~~~m 458 (523)
..+|..++-+|...+|+.+|++.|...
T Consensus 164 is~~YyvGFaylMlrRY~DAir~f~~i 190 (404)
T PF10255_consen 164 ISTYYYVGFAYLMLRRYADAIRTFSQI 190 (404)
T ss_pred eehHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555555543
No 446
>cd08323 CARD_APAF1 Caspase activation and recruitment domain similar to that found in Apoptotic Protease-Activating Factor 1. Caspase activation and recruitment domain (CARD) similar to that found in apoptotic protease-activating factor 1 (APAF-1), which is an activator of caspase-9. APAF-1 contains WD-40 repeats, a CARD, and an ATPase domain. Upon stimulation, APAF-1, together with caspase-9, forms the heptameric 'apoptosome', which leads to the processing and activation of caspase-9, starting a caspase cascade which leads to apoptosis. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and DED (Death Effect
Probab=48.30 E-value=80 Score=22.60 Aligned_cols=61 Identities=13% Similarity=0.106 Sum_probs=37.8
Q ss_pred HhHHHHHHHHhCCCCCChhHHHHHHHHhhccCCchhHHHHhccCCCCCcccHHHHHHHHHhCCCch
Q 038200 4 LLQIQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSNSCVPD 69 (523)
Q Consensus 4 ~~~i~~~~~~~g~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 69 (523)
+..|+++|+..|+- +..-... .-++....++|.++.+.++.+...+|....+++-..|...
T Consensus 16 v~~ild~L~~~gvl--t~~~~e~---I~~~~t~~~qa~~Lld~L~trG~~Af~~F~~aL~~~~~~~ 76 (86)
T cd08323 16 TSYIMDHMISDGVL--TLDEEEK---VKSKATQKEKAVMLINMILTKDNHAYVSFYNALLHEGYKD 76 (86)
T ss_pred HHHHHHHHHhcCCC--CHHHHHH---HHcCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCChH
Confidence 34577777777765 3333222 2335556777777777777777777777777766555433
No 447
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=46.66 E-value=1.4e+02 Score=27.62 Aligned_cols=28 Identities=4% Similarity=-0.154 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 038200 399 IMWVSLLSLCRFQGAVAMVERLAKSFVD 426 (523)
Q Consensus 399 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 426 (523)
..+......|++.||.+.|.+.+++..+
T Consensus 105 ea~~~kaeYycqigDkena~~~~~~t~~ 132 (393)
T KOG0687|consen 105 EAMLRKAEYYCQIGDKENALEALRKTYE 132 (393)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 3444445556666666666665555443
No 448
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=46.61 E-value=1.3e+02 Score=24.03 Aligned_cols=63 Identities=16% Similarity=0.102 Sum_probs=43.4
Q ss_pred HHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhhHHHHHHHHHhcCCh
Q 038200 378 EEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQW 448 (523)
Q Consensus 378 ~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 448 (523)
+.|.++.+-|- -.+ ............|++..|.++.+.++..+|++..+-...+.+|.+.|.-
T Consensus 58 ~~A~~~v~l~G------G~d--~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~~ 120 (141)
T PF14863_consen 58 EEAKRYVELAG------GAD--KVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGYQ 120 (141)
T ss_dssp HHHHHHHHHTT------CHH--HHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcC------CHH--HHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHh
Confidence 45666666664 122 2234455567889999999999999999999998888888888776543
No 449
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=46.53 E-value=2.1e+02 Score=25.30 Aligned_cols=167 Identities=9% Similarity=-0.008 Sum_probs=84.8
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcCCCHHHHHHHHHHHh-hcCcHHHHHHHHHHhhHhcCCCCChHHHHHHH
Q 038200 290 AMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACV-RAELLTEGRKYFRQMIDFYKIKPNFAHYWCMA 368 (523)
Q Consensus 290 ~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~ll~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 368 (523)
.++..+-+.|+++++...++++...+ ...+..--+.|-.+|- ..|....+++++..+.....-..+ .....++
T Consensus 6 ~~Aklaeq~eRy~dmv~~mk~~~~~~-----~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e~~~~~~~~-~~~~~~i 79 (236)
T PF00244_consen 6 YLAKLAEQAERYDDMVEYMKQLIEMN-----PELTEEERNLLSVAYKNVIGSRRASWRILSSIEQKEENKGN-EKQVKLI 79 (236)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHHHHTS-----S---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTT-HHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHccC-----CCCCHHHHHHHHHHHHhccccchHHHHhhhhHhhhhcccch-hHHHHHH
Confidence 35666778899999999999998876 4455544444444442 234455566666665553111111 2222333
Q ss_pred HHHHcC------CChHHHHHHHHhCCCCCCCCCchHHH-HHHHHHHH----HhcCC-------HHHHHHHHHHHhh----
Q 038200 369 NLYAGA------ELTEEAEEILRKMPEDNDNMSFESIM-WVSLLSLC----RFQGA-------VAMVERLAKSFVD---- 426 (523)
Q Consensus 369 ~~~~~~------g~~~~A~~~~~~~~~~~~~~~~~~~~-~~~l~~~~----~~~g~-------~~~a~~~~~~~~~---- 426 (523)
.-|.+. .--.+.+.+++...-... ..+...+ |..+-+=| +.... .+.|...|+.+.+
T Consensus 80 ~~yk~kie~EL~~~C~eii~lId~~Lip~~-~~~eskvfy~KmkgDyyRYlaE~~~~~~~~~~~~~a~~aY~~A~~~a~~ 158 (236)
T PF00244_consen 80 KDYKKKIEDELIDICNEIIRLIDKSLIPSA-TSPESKVFYYKMKGDYYRYLAEFDSGDEKKEAAEKALEAYEEALEIAKK 158 (236)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCHHHS--SHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccc-cchhHHHHHHHHhccccccccccccchhhHHHHHHHHHhhhhHHHHHhc
Confidence 333211 112355566665441110 1222222 22221111 11111 3677777777765
Q ss_pred -cCCCChhhHHHH----HHHHHhcCChhHHHHHHHHHHhCCC
Q 038200 427 -MDPQDFSRYQFL----LNVYAVAGQWEDVARVRELMKKRRM 463 (523)
Q Consensus 427 -~~p~~~~~~~~l----~~~~~~~g~~~~A~~~~~~m~~~~~ 463 (523)
+.|.+|.-.... +-.|...|+.++|.++.++..+..+
T Consensus 159 ~L~~~~p~rLgl~LN~svF~yei~~~~~~A~~ia~~afd~a~ 200 (236)
T PF00244_consen 159 ELPPTHPLRLGLALNYSVFYYEILNDPEKAIEIAKQAFDEAI 200 (236)
T ss_dssp HSCTTSHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHH
T ss_pred ccCCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Confidence 567676433222 2345668999999999888776544
No 450
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=46.23 E-value=2.1e+02 Score=25.31 Aligned_cols=62 Identities=10% Similarity=-0.051 Sum_probs=35.7
Q ss_pred HHHHHHHcCCChHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCC
Q 038200 366 CMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQ 430 (523)
Q Consensus 366 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 430 (523)
..-.++...|++-++++.-.+++.. .+-+...|..-..+....=+.++|.+-+.++++++|.
T Consensus 235 Ny~QC~L~~~e~yevleh~seiL~~---~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldps 296 (329)
T KOG0545|consen 235 NYCQCLLKKEEYYEVLEHCSEILRH---HPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPS 296 (329)
T ss_pred hHHHHHhhHHHHHHHHHHHHHHHhc---CCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChh
Confidence 3444555666677777766666643 2223444444444455555666777777777777664
No 451
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=46.12 E-value=1.2e+02 Score=29.12 Aligned_cols=55 Identities=11% Similarity=0.188 Sum_probs=31.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHhcCC-----------CCChhHHHHHHHHHHhcCCchHHHHHHHHHH
Q 038200 157 NSIVSGHVRSGDMSAAHELFDIMP-----------ERNVVSWNIMISGYSKSGNPGCSLKLFREMM 211 (523)
Q Consensus 157 ~~ll~~~~~~~~~~~a~~~~~~~~-----------~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 211 (523)
..+++.++-.||+..|+++++.+. .-.+.+|.-+.-+|.-.+++.+|.+.|....
T Consensus 126 igLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 126 IGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQIL 191 (404)
T ss_pred HHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555566666655555543 1234455556666677777777777666543
No 452
>PRK14700 recombination factor protein RarA; Provisional
Probab=45.86 E-value=2.4e+02 Score=25.86 Aligned_cols=68 Identities=9% Similarity=0.091 Sum_probs=45.6
Q ss_pred ChhHHHHHHHHHHh---cCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcccc-----HHHHHHHHHHHHHcCC
Q 038200 183 NVVSWNIMISGYSK---SGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSAR-----FNEGRSVHGYTVRTSL 250 (523)
Q Consensus 183 ~~~~~~~li~~~~~---~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~-----~~~a~~~~~~~~~~~~ 250 (523)
+...+..+|+++.+ ..+++.|+-++.+|++.|-.|....-..++-++-..|. ...|...++.....|.
T Consensus 122 ~gd~HYd~iSAf~KSiRGSDpDAAlYyLArml~~GEDp~~IaRRLii~AsEDIGlAdP~al~~a~aa~~A~~~iG~ 197 (300)
T PRK14700 122 EGKEFYEQLSAFHKSVRGTDPDAAIFWLSVMLDNGVDPLVIARRMLCIASEDIGNADPQALRVAMDAWNAYEKLGM 197 (300)
T ss_pred CcchhHHHHHHHHHHhhcCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCC
Confidence 33444556677654 47899999999999999988888777777777766663 2233344444444443
No 453
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=45.04 E-value=1.2e+02 Score=22.26 Aligned_cols=23 Identities=13% Similarity=0.015 Sum_probs=11.8
Q ss_pred HHhcCCHHHHHHHHHHHhhcCCC
Q 038200 408 CRFQGAVAMVERLAKSFVDMDPQ 430 (523)
Q Consensus 408 ~~~~g~~~~a~~~~~~~~~~~p~ 430 (523)
|.+.|+.+.+.+-|+.=..+-|.
T Consensus 82 ys~~G~~e~a~~eFetEKalFPE 104 (121)
T COG4259 82 YSNSGKDEQAVREFETEKALFPE 104 (121)
T ss_pred HhhcCChHHHHHHHHHhhhhCcc
Confidence 45555555555555554445553
No 454
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=44.77 E-value=4.2e+02 Score=28.37 Aligned_cols=182 Identities=9% Similarity=0.060 Sum_probs=93.7
Q ss_pred hcCCHHHHHHHHhcCCC--------CChhHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHHHHHHHH-----HHHhc
Q 038200 165 RSGDMSAAHELFDIMPE--------RNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVL-----TACGR 231 (523)
Q Consensus 165 ~~~~~~~a~~~~~~~~~--------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll-----~~~~~ 231 (523)
..|+++.|.++-+...+ ..+..+..+..+..-.|++++|..+..+..+.--.-+...+.... ..+..
T Consensus 470 ~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~ 549 (894)
T COG2909 470 NRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEA 549 (894)
T ss_pred hcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHH
Confidence 45666666655544332 355667777778888888888888877766542233333333222 22445
Q ss_pred cccHH--HHHHHHHHHHHc-----CC-CCchHHHHHHhhhhhhcCChHHHHHHHHhcCC------CCh--H--HHHHHHH
Q 038200 232 SARFN--EGRSVHGYTVRT-----SL-KPNIILDTALIDLYSKCQKVEVAQRVFDSMAD------RNL--V--CWNAMIL 293 (523)
Q Consensus 232 ~~~~~--~a~~~~~~~~~~-----~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~------~~~--~--~~~~li~ 293 (523)
+|... .....+...... .. .+-..++..+..++.+ ++.+..-...-.+ +.. . .+..|+.
T Consensus 550 qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ll~~~~r---~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~ 626 (894)
T COG2909 550 QGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQLLRAWLR---LDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAE 626 (894)
T ss_pred hhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHH---HhhhhHHhhhcchhhhhcccchhHHHHHHHHHHH
Confidence 56322 222223322221 00 1122344444555544 3333332222211 211 1 2236777
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCCCCcCCCHHHHHHHHHH--HhhcCcHHHHHHHHHH
Q 038200 294 GHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICA--CVRAELLTEGRKYFRQ 350 (523)
Q Consensus 294 ~~~~~g~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~ll~~--~~~~~~~~~a~~~~~~ 350 (523)
.+...|+.++|...+.++......+. ..++..+-...+.. -...|+.+.+...+.+
T Consensus 627 l~~~~Gdl~~A~~~l~~~~~l~~~~~-~~~~~~a~~~~v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 627 LEFLRGDLDKALAQLDELERLLLNGQ-YHVDYLAAAYKVKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred HHHhcCCHHHHHHHHHHHHHHhcCCC-CCchHHHHHHHhhHHHhcccCCHHHHHHHHHh
Confidence 88889999999999988877542111 23333333333332 2356788777776666
No 455
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=44.34 E-value=3e+02 Score=26.46 Aligned_cols=63 Identities=6% Similarity=-0.042 Sum_probs=42.3
Q ss_pred hHHHHHHHHHHhcCCchHHHHHHHHHHHCCC--CCCHHHHHHHHHHHhccccHHHHHHHHHHHHH
Q 038200 185 VSWNIMISGYSKSGNPGCSLKLFREMMKSGF--RGNDKTMASVLTACGRSARFNEGRSVHGYTVR 247 (523)
Q Consensus 185 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~--~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 247 (523)
..+..+...|...|+++.|++.|.+...--. +-....|..++....-.|+|.....+..+...
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~s 215 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAES 215 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHh
Confidence 4577788889999999999999988554311 11233455556666667777777666665554
No 456
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=44.34 E-value=2.7e+02 Score=25.99 Aligned_cols=156 Identities=10% Similarity=-0.026 Sum_probs=103.4
Q ss_pred HHHHHHHHHHhhHhcCCCCChHHHHHHHHHHHcCCChHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHh---cCCHHHH
Q 038200 341 LTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRF---QGAVAMV 417 (523)
Q Consensus 341 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~a 417 (523)
.+.-+.+++++.+. .+.+......++..+.+..+.++..+.++++... .+-+...|...+..... .-.++..
T Consensus 47 ~E~klsilerAL~~--np~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~---~~~~~~LW~~yL~~~q~~~~~f~v~~~ 121 (321)
T PF08424_consen 47 AERKLSILERALKH--NPDSERLLLGYLEEGEKVWDSEKLAKKWEELLFK---NPGSPELWREYLDFRQSNFASFTVSDV 121 (321)
T ss_pred HHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH---CCCChHHHHHHHHHHHHHhccCcHHHH
Confidence 45667889998884 4456778888899999999999999999999964 23367788888876544 2356777
Q ss_pred HHHHHHHhhc------C-----CC-------ChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCCceeEEEeCCeEE
Q 038200 418 ERLAKSFVDM------D-----PQ-------DFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLKEVVE 479 (523)
Q Consensus 418 ~~~~~~~~~~------~-----p~-------~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~ 479 (523)
..+|.+.++. + ++ -..++..+...+..+|-.+.|+.+++.+.+.++-..+...-.
T Consensus 122 ~~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n~~~P~~~~~~------- 194 (321)
T PF08424_consen 122 RDVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFNFFRPESLSSS------- 194 (321)
T ss_pred HHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHcCCccccccc-------
Confidence 7777766641 1 00 112445556667789999999999999999887443322000
Q ss_pred EEecCCCCchHHHHHHHHHHhcccCCcccccccccc
Q 038200 480 KLKVGHFWRGGMKEEVNKMMECRQSRSLATVSKQLP 515 (523)
Q Consensus 480 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 515 (523)
...+.++.++..++..-=+.......|-.
T Consensus 195 -------~~~~~~~~fe~FWeS~vpRiGE~gA~GW~ 223 (321)
T PF08424_consen 195 -------SFSERLESFEEFWESEVPRIGEPGAKGWR 223 (321)
T ss_pred -------cHHHHHHHHHHHhCcCCCCCCCCCcchhh
Confidence 11255666666666655555555444444
No 457
>PHA03100 ankyrin repeat protein; Provisional
Probab=43.47 E-value=3.4e+02 Score=26.92 Aligned_cols=240 Identities=10% Similarity=0.075 Sum_probs=110.8
Q ss_pred HHHHHHhhccCCchhHHHHhccCCCCCccc--HHHHHHH-----HHhCCCchHHHHHHHHHHHCCCCCCcc---cHHHHH
Q 038200 25 INLLKHSADFGSPDYTVLVFKCINNPGTFC--VNAVIKA-----YSNSCVPDQGVVFYLQMIKNGFMPNSY---TFVSLF 94 (523)
Q Consensus 25 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~ll~~-----~~~~~~~~~a~~~~~~m~~~~~~p~~~---~~~~ll 94 (523)
...+...++.|+.+-...+++.-..++... ....+.. .+..|+. ++.+.+.+.|..++.. ..+.+.
T Consensus 36 ~t~L~~A~~~~~~~ivk~Ll~~g~~~~~~~~~~~t~L~~~~~~~a~~~~~~----~iv~~Ll~~ga~i~~~d~~g~tpL~ 111 (480)
T PHA03100 36 VLPLYLAKEARNIDVVKILLDNGADINSSTKNNSTPLHYLSNIKYNLTDVK----EIVKLLLEYGANVNAPDNNGITPLL 111 (480)
T ss_pred chhhhhhhccCCHHHHHHHHHcCCCCCCccccCcCHHHHHHHHHHHhhchH----HHHHHHHHCCCCCCCCCCCCCchhh
Confidence 344555667788887777777654433221 1122333 3444433 3445555566544322 233333
Q ss_pred HHHH-ccCCchHHHHHHHHHHHhCCCCCch--HHHHHHHHHHccC--ChHHHHHHHhhcCCCCcc--hHHHHHHHHHhcC
Q 038200 95 GSCA-KTGCVERGGMCHGLALKNGVDFELP--VMNSLINMYGCFG--AMDCARNMFVQMSPRDLI--SWNSIVSGHVRSG 167 (523)
Q Consensus 95 ~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g--~~~~A~~~~~~~~~~~~~--~~~~ll~~~~~~~ 167 (523)
.++. ..|+.+- ++.+.+.|..++.. .-.+.+...+..| +.+-+.-+++.-...+.. .-.+.+...+..|
T Consensus 112 ~A~~~~~~~~~i----v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~iv~~Ll~~g~din~~d~~g~tpL~~A~~~~ 187 (480)
T PHA03100 112 YAISKKSNSYSI----VEYLLDNGANVNIKNSDGENLLHLYLESNKIDLKILKLLIDKGVDINAKNRYGYTPLHIAVEKG 187 (480)
T ss_pred HHHhcccChHHH----HHHHHHcCCCCCccCCCCCcHHHHHHHcCCChHHHHHHHHHCCCCcccccCCCCCHHHHHHHhC
Confidence 3332 5555443 44445556544322 1234555566666 666666666654432211 1223455566677
Q ss_pred CHHHHHHHHhcCCCCCh--------hHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCH---HHHHHHHHHHhccccHH
Q 038200 168 DMSAAHELFDIMPERNV--------VSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGND---KTMASVLTACGRSARFN 236 (523)
Q Consensus 168 ~~~~a~~~~~~~~~~~~--------~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~---~~~~~ll~~~~~~~~~~ 236 (523)
+.+-+.-+++.-..++. ..+...+...+..|+ ...++.+.+.+.|..++. ...+.+.. .+..|+.+
T Consensus 188 ~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~t~l~~a~~~~~--~~~~iv~~Ll~~g~din~~d~~g~TpL~~-A~~~~~~~ 264 (480)
T PHA03100 188 NIDVIKFLLDNGADINAGDIETLLFTIFETPLHIAACYNE--ITLEVVNYLLSYGVPINIKDVYGFTPLHY-AVYNNNPE 264 (480)
T ss_pred CHHHHHHHHHcCCCccCCCCCCCcHHHHHhHHHHHHHhCc--CcHHHHHHHHHcCCCCCCCCCCCCCHHHH-HHHcCCHH
Confidence 77777777765443221 111333444445554 112344455555554432 22233332 33445543
Q ss_pred HHHHHHHHHHHcCCCCchHHH--HHHhhhhhhcCChHHHHHHHHh
Q 038200 237 EGRSVHGYTVRTSLKPNIILD--TALIDLYSKCQKVEVAQRVFDS 279 (523)
Q Consensus 237 ~a~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~~~~~~a~~~~~~ 279 (523)
+.+.+.+.|..++.... .+-+......++.+-+..+++.
T Consensus 265 ----iv~~Ll~~gad~n~~d~~g~tpl~~A~~~~~~~iv~~Ll~~ 305 (480)
T PHA03100 265 ----FVKYLLDLGANPNLVNKYGDTPLHIAILNNNKEIFKLLLNN 305 (480)
T ss_pred ----HHHHHHHcCCCCCccCCCCCcHHHHHHHhCCHHHHHHHHhc
Confidence 44445555554432210 1122233444555555555544
No 458
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=43.30 E-value=1e+02 Score=27.57 Aligned_cols=58 Identities=16% Similarity=0.122 Sum_probs=47.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 038200 404 LLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKR 461 (523)
Q Consensus 404 l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 461 (523)
+-.++.+.++++.|.+..+....++|.++.-...-+-+|.+.|.+.-|+.-++...+.
T Consensus 187 lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~ 244 (269)
T COG2912 187 LKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEH 244 (269)
T ss_pred HHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHh
Confidence 3346778888999999999999999988888888888899999888888887775444
No 459
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=43.02 E-value=1.6e+02 Score=22.93 Aligned_cols=40 Identities=13% Similarity=0.164 Sum_probs=28.8
Q ss_pred HHHHHHHHhh--cCCCChhhHHHHHHHHHhcCChhHHHHHHH
Q 038200 417 VERLAKSFVD--MDPQDFSRYQFLLNVYAVAGQWEDVARVRE 456 (523)
Q Consensus 417 a~~~~~~~~~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 456 (523)
...+|..+.+ ++......|...+..+...|++.+|.++|+
T Consensus 82 p~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~ 123 (125)
T smart00777 82 PRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQ 123 (125)
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 4556666665 344456677788888888888888888876
No 460
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=42.37 E-value=3.2e+02 Score=26.27 Aligned_cols=56 Identities=7% Similarity=0.166 Sum_probs=39.2
Q ss_pred HHHHhcCCchHHHHHHHHHHHCCCCCCHH--HHHHHHHHHh--ccccHHHHHHHHHHHHHc
Q 038200 192 SGYSKSGNPGCSLKLFREMMKSGFRGNDK--TMASVLTACG--RSARFNEGRSVHGYTVRT 248 (523)
Q Consensus 192 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~--~~~~ll~~~~--~~~~~~~a~~~~~~~~~~ 248 (523)
..+.+.+++..|.++|+.+... ++++.. .+..+..+|. ..-++.+|.+.++.....
T Consensus 139 ~~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 139 KELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 3455788999999999999887 555554 3444555543 456778888888877664
No 461
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=42.36 E-value=36 Score=30.90 Aligned_cols=31 Identities=16% Similarity=0.090 Sum_probs=19.6
Q ss_pred HHHHHHHHHhCCCchHHHHHHHHHHHCCCCC
Q 038200 55 VNAVIKAYSNSCVPDQGVVFYLQMIKNGFMP 85 (523)
Q Consensus 55 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p 85 (523)
||..|....+.||+++|+.++++..+.|+.-
T Consensus 260 y~~aI~~AVk~gDi~KAL~LldEAe~LG~~~ 290 (303)
T PRK10564 260 FNQAIKQAVKKGDVDKALKLLDEAERLGSTS 290 (303)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCch
Confidence 4566666666666666666666666666443
No 462
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=42.25 E-value=2.7e+02 Score=25.31 Aligned_cols=197 Identities=10% Similarity=0.026 Sum_probs=105.5
Q ss_pred HHHHHhccccHHHHHHHHHHHHHcCCCCchH-------HHHHHhhhhhhcCChHHHHHHHH-------hcCCC-ChHHHH
Q 038200 225 VLTACGRSARFNEGRSVHGYTVRTSLKPNII-------LDTALIDLYSKCQKVEVAQRVFD-------SMADR-NLVCWN 289 (523)
Q Consensus 225 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~l~~~~~~~~~~~~a~~~~~-------~~~~~-~~~~~~ 289 (523)
+.+-..+.+++++|...|.++...|+..+.. +...+...|...|+...-.+... ...+| .+....
T Consensus 9 ~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~Kiir 88 (421)
T COG5159 9 LANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKIIR 88 (421)
T ss_pred HHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHHHH
Confidence 4455677889999999999999988766543 44457778888888655444433 33333 334556
Q ss_pred HHHHHHHh-cCChHHHHHHHHHHHhCCCCCCCcCCCH-----HHHHHHHHHHhhcCcHHHHHHHHHHhhHh---cCCCCC
Q 038200 290 AMILGHCI-HGKPEEGIKLFTALVNGTVAGGSISPDE-----ITFIGVICACVRAELLTEGRKYFRQMIDF---YKIKPN 360 (523)
Q Consensus 290 ~li~~~~~-~g~~~~a~~~~~~m~~~~~~~~~~~p~~-----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---~~~~~~ 360 (523)
+++..+-. ...++..+.+....++.. .+-.. ..=.-++..+.+.|.+.+|+.+.+.+..+ +.-+|+
T Consensus 89 tLiekf~~~~dsl~dqi~v~~~~iewA-----~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~ 163 (421)
T COG5159 89 TLIEKFPYSSDSLEDQIKVLTALIEWA-----DREKRKFLRLELECKLIYLLYKTGKYSDALALINPLLHELKKYDDKIN 163 (421)
T ss_pred HHHHhcCCCCccHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccc
Confidence 66666543 344666666666655532 11111 12234677888999999998776654332 244554
Q ss_pred hHHHHHH-HHHHHcCCChHHHHHHHHhCCC--CCCCCCchHHHHHHHHHH--HHhcCCHHHHHHHHHHHhh
Q 038200 361 FAHYWCM-ANLYAGAELTEEAEEILRKMPE--DNDNMSFESIMWVSLLSL--CRFQGAVAMVERLAKSFVD 426 (523)
Q Consensus 361 ~~~~~~l-~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~~~~~~l~~~--~~~~g~~~~a~~~~~~~~~ 426 (523)
..+...+ -.+|....+..++..-+..... ...-.+|....-.-++.+ .+...++..|..+|-.+.+
T Consensus 164 Li~vhllESKvyh~irnv~KskaSLTaArt~Ans~YCPpqlqa~lDL~sGIlhcdd~dyktA~SYF~Ea~E 234 (421)
T COG5159 164 LITVHLLESKVYHEIRNVSKSKASLTAARTLANSAYCPPQLQAQLDLLSGILHCDDRDYKTASSYFIEALE 234 (421)
T ss_pred eeehhhhhHHHHHHHHhhhhhhhHHHHHHHHhhccCCCHHHHHHHHHhccceeeccccchhHHHHHHHHHh
Confidence 3222211 2333333333333222221110 001134443333334433 2444567777776666555
No 463
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=41.71 E-value=1.3e+02 Score=21.66 Aligned_cols=29 Identities=21% Similarity=0.196 Sum_probs=13.4
Q ss_pred hHHHHHHHHHHHcCCChHHHHHHHHhCCC
Q 038200 361 FAHYWCMANLYAGAELTEEAEEILRKMPE 389 (523)
Q Consensus 361 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 389 (523)
......+...+...|++++|++.+-+++.
T Consensus 22 ~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~ 50 (90)
T PF14561_consen 22 LDARYALADALLAAGDYEEALDQLLELVR 50 (90)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 34444444455555555555554444443
No 464
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=41.49 E-value=1.9e+02 Score=25.66 Aligned_cols=55 Identities=13% Similarity=-0.092 Sum_probs=27.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhcCC------CChhhHHHHHHHHHhcCChhHHHHHHHH
Q 038200 403 SLLSLCRFQGAVAMVERLAKSFVDMDP------QDFSRYQFLLNVYAVAGQWEDVARVREL 457 (523)
Q Consensus 403 ~l~~~~~~~g~~~~a~~~~~~~~~~~p------~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 457 (523)
.+..-|...|++++|.++++.+...-. -...+...+..++.+.|+.++.+.+-=+
T Consensus 183 ~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~le 243 (247)
T PF11817_consen 183 EMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLE 243 (247)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 334445555666666666655543111 0223444555566666666665554433
No 465
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=41.08 E-value=4e+02 Score=27.00 Aligned_cols=55 Identities=4% Similarity=-0.074 Sum_probs=30.6
Q ss_pred HHHHHhCCCchHHHHHHHHHHHCCCCCCcccHHHHHHHHH-ccCCchHHHHHHHHH
Q 038200 59 IKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCA-KTGCVERGGMCHGLA 113 (523)
Q Consensus 59 l~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~-~~~~~~~a~~~~~~~ 113 (523)
|..+.+.|-+..|++..+-+.+.+..-|+.....+|..|+ +..++.-.+++++..
T Consensus 349 m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~ 404 (665)
T KOG2422|consen 349 MQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEP 404 (665)
T ss_pred HHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 3445566666666666666666543334555555565554 445555555555544
No 466
>cd08332 CARD_CASP2 Caspase activation and recruitment domain of Caspase-2. Caspase activation and recruitment domain (CARD) similar to that found in caspase-2. Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Caspase-2 (also known as ICH1, NEDD2, or CASP2) is one of the most evolutionarily conserved caspases, and plays a role in apoptosis, DNA damage response, cell cycle regulation, and tumor suppression. It is localized in the nucleus and exhibits properties of both an initiator and an effector caspase. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and
Probab=40.75 E-value=80 Score=22.82 Aligned_cols=27 Identities=15% Similarity=0.384 Sum_probs=11.8
Q ss_pred HHHHHHHHhcCCCCChhHHHHHHHHHH
Q 038200 169 MSAAHELFDIMPERNVVSWNIMISGYS 195 (523)
Q Consensus 169 ~~~a~~~~~~~~~~~~~~~~~li~~~~ 195 (523)
.+.+.++++.++..+..+|..+..++.
T Consensus 50 ~~k~~~Lld~L~~RG~~AF~~F~~aL~ 76 (90)
T cd08332 50 FSQNVALLNLLPKRGPRAFSAFCEALR 76 (90)
T ss_pred HHHHHHHHHHHHHhChhHHHHHHHHHH
Confidence 344444444444444444444444443
No 467
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=40.40 E-value=3.1e+02 Score=25.50 Aligned_cols=25 Identities=32% Similarity=0.242 Sum_probs=12.8
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHhC
Q 038200 363 HYWCMANLYAGAELTEEAEEILRKM 387 (523)
Q Consensus 363 ~~~~l~~~~~~~g~~~~A~~~~~~~ 387 (523)
.+.....-|++.|+.+.|++.+++.
T Consensus 106 a~~~kaeYycqigDkena~~~~~~t 130 (393)
T KOG0687|consen 106 AMLRKAEYYCQIGDKENALEALRKT 130 (393)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHH
Confidence 3334444555555555555555443
No 468
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=40.21 E-value=3.8e+02 Score=26.51 Aligned_cols=119 Identities=8% Similarity=-0.003 Sum_probs=70.5
Q ss_pred HhcCCchHHHHHHHHHHHCCC-CCC--HH-----HHH-HHHHHHhccccHHHHHHHHHHHHHcCCCCchHH--HHHHhhh
Q 038200 195 SKSGNPGCSLKLFREMMKSGF-RGN--DK-----TMA-SVLTACGRSARFNEGRSVHGYTVRTSLKPNIIL--DTALIDL 263 (523)
Q Consensus 195 ~~~~~~~~a~~~~~~m~~~~~-~p~--~~-----~~~-~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~ 263 (523)
.-.|++.+|++-...|.+... .|. .. ... .+..-|+..+.++.|+.-|....+.--..|... -..+.-.
T Consensus 334 lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi~ 413 (629)
T KOG2300|consen 334 LVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFCNLNLAIS 413 (629)
T ss_pred HHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHH
Confidence 346888888888888876422 222 11 112 222234566778888887777666533333322 2345567
Q ss_pred hhhcCChHHHHHHHHhcCCCChHHHHHH--------HHH--HHhcCChHHHHHHHHHHHh
Q 038200 264 YSKCQKVEVAQRVFDSMADRNLVCWNAM--------ILG--HCIHGKPEEGIKLFTALVN 313 (523)
Q Consensus 264 ~~~~~~~~~a~~~~~~~~~~~~~~~~~l--------i~~--~~~~g~~~~a~~~~~~m~~ 313 (523)
|.+.|+-+.-.++++.+..+|..++.+- +.+ ....+++.+|...+.+-.+
T Consensus 414 YL~~~~~ed~y~~ld~i~p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lk 473 (629)
T KOG2300|consen 414 YLRIGDAEDLYKALDLIGPLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLK 473 (629)
T ss_pred HHHhccHHHHHHHHHhcCCCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHh
Confidence 7888888888888888776654333221 111 2356788888887777665
No 469
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=40.14 E-value=9.2e+02 Score=30.95 Aligned_cols=58 Identities=10% Similarity=0.051 Sum_probs=32.2
Q ss_pred CChhHHHHHHHHhhccCCchhHHHHhccCCCCCcccHHHHHHHHHhCCCchHHHHHHHHHH
Q 038200 19 NNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMI 79 (523)
Q Consensus 19 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~ 79 (523)
.+.....++...|......|----+|++-. ...=+...-.|.+.|.+++|..+|++..
T Consensus 2452 ~~~~~~dsl~elY~~L~E~Dm~~Glwrrr~---~~~eT~~a~s~eQ~G~~e~AQ~lyekaq 2509 (3550)
T KOG0889|consen 2452 GDESCLDSLAELYRSLNEEDMFYGLWRRRA---KFPETMVALSYEQLGFWEEAQSLYEKAQ 2509 (3550)
T ss_pred hhHHHHHHHHHHHHhhhHHHHHHHHHHHhh---ccHHHHHHHHHHHhhhHHHHhhHHHHHH
Confidence 445556666666666665555555554311 1111223445667777777777777654
No 470
>cd08330 CARD_ASC_NALP1 Caspase activation and recruitment domain found in Human ASC, NALP1, and similar proteins. Caspase activation and recruitment domain (CARD) similar to those found in human ASC (Apoptosis-associated speck-like protein containing a CARD) and NALP1 (CARD7, NLRP1). ASC, an adaptor molecule, and NALP1, a member of the Nod-like receptor (NLR) family, are involved in the assembly of the 'inflammasome', a multiprotein platform, which is responsible for caspase-1 activation and regulation of IL-1beta maturation. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and DED (Death Effector Domain). They se
Probab=39.79 E-value=94 Score=21.97 Aligned_cols=55 Identities=11% Similarity=0.086 Sum_probs=35.9
Q ss_pred HhHHHHHHHHhCCCCCChhHHHHHHHHhhccCCchhHHHHhccCCCCCcccHHHHHHHHH
Q 038200 4 LLQIQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAYS 63 (523)
Q Consensus 4 ~~~i~~~~~~~g~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~ 63 (523)
+..|++.+...|+- +..-+..+- ++..+-++|.++++.++..+..++..+..++.
T Consensus 17 v~~ilD~L~~~~Vi--t~e~~~~I~---a~~T~~~kar~Lld~l~~kG~~A~~~F~~~L~ 71 (82)
T cd08330 17 VDPILDKLHGKKVI--TQEQYSEVR---AEKTNQEKMRKLFSFVRSWGASCKDIFYQILR 71 (82)
T ss_pred HHHHHHHHHHCCCC--CHHHHHHHH---cCCCcHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 45577777777765 444443333 34566778888888877777777777777663
No 471
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=39.76 E-value=2.8e+02 Score=25.24 Aligned_cols=109 Identities=11% Similarity=0.127 Sum_probs=56.8
Q ss_pred HHHhhHhcCCCCChHHHHHHHHHHHcCCChHHHHHHHHhCCCCC--CCCCchHHHHHHHHHH---HHhcCCHHHHHHHHH
Q 038200 348 FRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDN--DNMSFESIMWVSLLSL---CRFQGAVAMVERLAK 422 (523)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~~~l~~~---~~~~g~~~~a~~~~~ 422 (523)
+++..+..|-.-....+..+..-|++.++.+.+.++..+..+.. .|.+.|. +.+.+.. |....-.++-.+..+
T Consensus 102 i~~~eedngE~e~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv--~l~kiRlg~~y~d~~vV~e~lE~~~ 179 (412)
T COG5187 102 IREKEEDNGETEGSEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDV--FLCKIRLGLIYGDRKVVEESLEVAD 179 (412)
T ss_pred HHHHhhcccchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhh--HHHHHHHHHhhccHHHHHHHHHHHH
Confidence 33444332333346677778888899888888888877655332 3344443 3333332 222223455555566
Q ss_pred HHhhcCCC--ChhhHHHHHH-HHHhcCChhHHHHHHHHH
Q 038200 423 SFVDMDPQ--DFSRYQFLLN-VYAVAGQWEDVARVRELM 458 (523)
Q Consensus 423 ~~~~~~p~--~~~~~~~l~~-~~~~~g~~~~A~~~~~~m 458 (523)
.+++.+-+ -..-|...-. .+....++.+|-.++-..
T Consensus 180 ~~iEkGgDWeRrNRyK~Y~Gi~~m~~RnFkeAa~Ll~d~ 218 (412)
T COG5187 180 DIIEKGGDWERRNRYKVYKGIFKMMRRNFKEAAILLSDI 218 (412)
T ss_pred HHHHhCCCHHhhhhHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 66665443 1112222222 223445667776666554
No 472
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=39.05 E-value=77 Score=18.17 Aligned_cols=14 Identities=7% Similarity=-0.090 Sum_probs=6.2
Q ss_pred HHHhcCCHHHHHHH
Q 038200 407 LCRFQGAVAMVERL 420 (523)
Q Consensus 407 ~~~~~g~~~~a~~~ 420 (523)
.+...|++++|..+
T Consensus 10 ~~y~~~ky~~A~~~ 23 (36)
T PF07720_consen 10 NFYQKGKYDEAIHF 23 (36)
T ss_dssp HHHHTT-HHHHHHH
T ss_pred HHHHHhhHHHHHHH
Confidence 34444455555554
No 473
>PF10155 DUF2363: Uncharacterized conserved protein (DUF2363); InterPro: IPR019312 This entry represents a region of 120 amino acids in proteins conserved from plants to humans. Their function is not known.
Probab=38.87 E-value=1.9e+02 Score=22.58 Aligned_cols=110 Identities=9% Similarity=0.082 Sum_probs=62.8
Q ss_pred CchhHHHHhccCCCCCcccHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCcccHHHHHHHHHcc-----------CCch
Q 038200 36 SPDYTVLVFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKT-----------GCVE 104 (523)
Q Consensus 36 ~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~-----------~~~~ 104 (523)
++.-|.+++.++...+ .+...++.+....-.-.++++..++....-.|.. ..+..+.-|.+. +...
T Consensus 4 Np~IA~~~l~~l~~s~--~~~~yld~lv~~~~sl~s~EvVn~L~~~~~~p~e-fl~~yI~~cI~~ce~~kd~~~q~R~VR 80 (126)
T PF10155_consen 4 NPNIAIEILVKLINSP--NFKEYLDVLVSMDMSLHSMEVVNRLTTSFSLPQE-FLHMYISNCIKSCESIKDKYMQNRLVR 80 (126)
T ss_pred cHHHHHHHHHHHcCCc--hHHHHHHHHHcCCCchhHHHHHHHHHcCCCCcHH-HHHHHHHHHHHHHHhhcccccccchhh
Confidence 3444555554433222 2555666666666666677777777765433333 333344433322 2223
Q ss_pred HHHHHHHHHHHhCCCCCchHHHHHHHHHHccCChHHHHHHHhhc
Q 038200 105 RGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQM 148 (523)
Q Consensus 105 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 148 (523)
-.-.+++.+++.++......+..+=..|.+-.++.+|-.+|+-+
T Consensus 81 lvcvfl~sLir~~i~~~~~l~~evq~FClefs~i~Ea~~L~kll 124 (126)
T PF10155_consen 81 LVCVFLQSLIRNKIIDVEDLFIEVQAFCLEFSRIKEASALFKLL 124 (126)
T ss_pred hHHHHHHHHHHcCCCchHHHHhhHHHHHHHHccHHHHHHHHHHH
Confidence 33445667777777656666667777777777788887777654
No 474
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=38.51 E-value=1.3e+02 Score=24.80 Aligned_cols=58 Identities=5% Similarity=-0.071 Sum_probs=27.4
Q ss_pred HCCCCCCcccHHHHHHHHHccCCchHHHHHHHHHHHhCCCCCchHHHHHHHHHHccCCh
Q 038200 80 KNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAM 138 (523)
Q Consensus 80 ~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 138 (523)
+.|++++..- ..++..+...++.-.|.++++.+.+.++.++..|.-.-+..+...|-+
T Consensus 19 ~~GlR~T~qR-~~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Glv 76 (169)
T PRK11639 19 QRNVRLTPQR-LEVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGFV 76 (169)
T ss_pred HcCCCCCHHH-HHHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCCE
Confidence 3444433322 233344433444455566666665555555544444444555555543
No 475
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=38.17 E-value=3.2e+02 Score=25.13 Aligned_cols=91 Identities=10% Similarity=0.082 Sum_probs=0.0
Q ss_pred HHHHHHHHhCCCCCCCcCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhHhcCCCCChHHHHHHHHHHH----------cC
Q 038200 305 IKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYA----------GA 374 (523)
Q Consensus 305 ~~~~~~m~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~----------~~ 374 (523)
.++|+.|...+ +.|.-..|.-+.-.+.+.=.+.+.+.+|+.+.. |+.-|..|+..|+ -.
T Consensus 263 ~EL~~~L~~~~-----i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~s------D~~rfd~Ll~iCcsmlil~Re~il~ 331 (370)
T KOG4567|consen 263 EELWRHLEEKE-----IHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLS------DPQRFDFLLYICCSMLILVRERILE 331 (370)
T ss_pred HHHHHHHHhcC-----CCccchhHHHHHHHHhccCCchhHHHHHHHHhc------ChhhhHHHHHHHHHHHHHHHHHHHh
Q ss_pred CChHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHhcC
Q 038200 375 ELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQG 412 (523)
Q Consensus 375 g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 412 (523)
|++...+++++.-. ..|......+...+....
T Consensus 332 ~DF~~nmkLLQ~yp------~tdi~~~l~~A~~Lr~~k 363 (370)
T KOG4567|consen 332 GDFTVNMKLLQNYP------TTDISKMLAVADSLRDKK 363 (370)
T ss_pred cchHHHHHHHhcCC------CCCHHHHHHHHHHHHhcc
No 476
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=37.76 E-value=2.9e+02 Score=24.39 Aligned_cols=82 Identities=13% Similarity=0.135 Sum_probs=52.2
Q ss_pred cCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhHhcCC-----------CCChHHHHHHHHHHHcCCChHHHHHHHHhCCC
Q 038200 321 ISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKI-----------KPNFAHYWCMANLYAGAELTEEAEEILRKMPE 389 (523)
Q Consensus 321 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-----------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 389 (523)
+.-+...+..++ +...|+..+|+..++.-...+|. .|.+.....++..+. .+++++|.+++.++-
T Consensus 190 v~yt~dgLeaii--fta~GDMRQalNnLQst~~g~g~Vn~enVfKv~d~PhP~~v~~ml~~~~-~~~~~~A~~il~~lw- 265 (333)
T KOG0991|consen 190 VNYTDDGLEAII--FTAQGDMRQALNNLQSTVNGFGLVNQENVFKVCDEPHPLLVKKMLQACL-KRNIDEALKILAELW- 265 (333)
T ss_pred CCCCcchHHHhh--hhccchHHHHHHHHHHHhccccccchhhhhhccCCCChHHHHHHHHHHH-hccHHHHHHHHHHHH-
Confidence 344443343333 45678888888888877664443 466677676666554 468999999999988
Q ss_pred CCCCCCchHHHHHHHHHHH
Q 038200 390 DNDNMSFESIMWVSLLSLC 408 (523)
Q Consensus 390 ~~~~~~~~~~~~~~l~~~~ 408 (523)
..|+.|...+ +.+...+
T Consensus 266 -~lgysp~Dii-~~~FRv~ 282 (333)
T KOG0991|consen 266 -KLGYSPEDII-TTLFRVV 282 (333)
T ss_pred -HcCCCHHHHH-HHHHHHH
Confidence 4457776433 3444443
No 477
>cd08329 CARD_BIRC2_BIRC3 Caspase activation and recruitment domain found in Baculoviral IAP repeat-containing proteins, BIRC2 (c-IAP1) and BIRC3 (c-IAP2). Caspase activation and recruitment domain (CARD) similar to those found in Baculoviral IAP repeat (BIR)-containing protein 2 (BIRC2) or cellular Inhibitor of Apoptosis Protein 1 (c-IAP1), and BIRC3 (or c-IAP2). IAPs are anti-apoptotic proteins that contain at least one BIR domain. Most IAPs also contain a C-terminal RING domain. In addition, both BIRC2 and BIRC3 contain a CARD. BIRC2 and BIRC3, through their binding with TRAF (TNF receptor-associated factor) 2, are recruited to TNFR-1/2 signaling complexes, where they regulate caspase-8 activity. They also play important roles in pro-survival NF-kB signaling pathways. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation and host-defense mechanisms. DDs are protein-protein interac
Probab=37.55 E-value=96 Score=22.63 Aligned_cols=52 Identities=8% Similarity=0.002 Sum_probs=27.7
Q ss_pred HHHHHHHHhCCCCCChhHHHHHHHHhhccCCchhHHHHhccCCCCCcccHHHHHHHH
Q 038200 6 QIQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAY 62 (523)
Q Consensus 6 ~i~~~~~~~g~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~ 62 (523)
.|++.+...|+- +..-+.. +-++....++|.++++.++.+...++..++.++
T Consensus 27 ~ilD~Ll~~~Vl--t~ee~e~---I~~~~t~~~qAr~Lld~l~~KG~~A~~~F~~~L 78 (94)
T cd08329 27 PILDSLLSANVI--TEQEYDV---IKQKTQTPLQARELIDTVLVKGNAAAEVFRNCL 78 (94)
T ss_pred HHHHHHHHcCCC--CHHHHHH---HHcCCChHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 456666666655 3332222 222333346666666666666666666666555
No 478
>cd08323 CARD_APAF1 Caspase activation and recruitment domain similar to that found in Apoptotic Protease-Activating Factor 1. Caspase activation and recruitment domain (CARD) similar to that found in apoptotic protease-activating factor 1 (APAF-1), which is an activator of caspase-9. APAF-1 contains WD-40 repeats, a CARD, and an ATPase domain. Upon stimulation, APAF-1, together with caspase-9, forms the heptameric 'apoptosome', which leads to the processing and activation of caspase-9, starting a caspase cascade which leads to apoptosis. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and DED (Death Effect
Probab=37.19 E-value=1.5e+02 Score=21.25 Aligned_cols=32 Identities=9% Similarity=0.168 Sum_probs=14.9
Q ss_pred CCHHHHHHHHhcCCCCChhHHHHHHHHHHhcC
Q 038200 167 GDMSAAHELFDIMPERNVVSWNIMISGYSKSG 198 (523)
Q Consensus 167 ~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~ 198 (523)
...++|..+++.++.++..+|..+.+++...|
T Consensus 42 t~~~qa~~Lld~L~trG~~Af~~F~~aL~~~~ 73 (86)
T cd08323 42 TQKEKAVMLINMILTKDNHAYVSFYNALLHEG 73 (86)
T ss_pred ChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 33444444444444444444444444444333
No 479
>PHA02791 ankyrin-like protein; Provisional
Probab=36.39 E-value=3.4e+02 Score=24.82 Aligned_cols=20 Identities=15% Similarity=0.017 Sum_probs=9.5
Q ss_pred HHHHHHhcCCHHHHHHHHhc
Q 038200 159 IVSGHVRSGDMSAAHELFDI 178 (523)
Q Consensus 159 ll~~~~~~~~~~~a~~~~~~ 178 (523)
.+...+..|+.+-+.-+++.
T Consensus 131 pL~~Aa~~g~~eivk~LL~~ 150 (284)
T PHA02791 131 SFYHAVMLNDVSIVSYFLSE 150 (284)
T ss_pred HHHHHHHcCCHHHHHHHHhc
Confidence 33334444555555555543
No 480
>cd08327 CARD_RAIDD Caspase activation and recruitment domain of RIP-associated ICH-1 homologous protein with a death domain. Caspase activation and recruitment domain (CARD) of RAIDD (RIP-associated ICH-1 homologous protein with a death domain), also known as CRADD (Caspase and RIP adaptor). RAIDD is an adaptor protein that together with the p53-inducible protein PIDD and caspase-2, forms the PIDDosome complex, which is required for caspase-2 activation and plays a role in mediating stress-induced apoptosis. RAIDD contains an N-terminal CARD, which interacts with the caspase-2 CARD, and a C-terminal Death domain (DD), which interacts with the DD of PIDD. In general, CARDs are DDs associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodime
Probab=36.18 E-value=1.7e+02 Score=21.36 Aligned_cols=33 Identities=12% Similarity=0.176 Sum_probs=21.7
Q ss_pred hhccCCchhHHHHhccCCCCCcccHHHHHHHHH
Q 038200 31 SADFGSPDYTVLVFKCINNPGTFCVNAVIKAYS 63 (523)
Q Consensus 31 ~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~ 63 (523)
-+...+.++|.++++-++.+...+|.....++-
T Consensus 45 ~a~~T~~~k~~~LLdiLp~RG~~AF~~F~~aL~ 77 (94)
T cd08327 45 ESQTTSRRKTMKLLDILPSRGPKAFHAFLDSLE 77 (94)
T ss_pred HccCChHHHHHHHHHHHHhhChhHHHHHHHHHH
Confidence 345556667777777777777677766666663
No 481
>cd08810 CARD_BCL10 Caspase activation and recruitment domain of B-cell lymphoma 10. Caspase activation and recruitment domain (CARD) similar to that found in BCL10 (B-cell lymphoma 10). BCL10 and Malt1 (mucosa-associated lymphoid tissue-lymphoma-translocation gene 1) are the integral components of CBM signalosomes. They associate with CARD9 to form M-CBM (CBM complex in myeloid immune cells) and with CARMA1 to form L-CBM (CBM complex in lymphoid immune cells), to mediate activation of NF-kB and MAPK by ITAM-coupled receptors expressed on immune cells. Both CARMA1 and CARD9 associate with BCL10 via a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by asso
Probab=36.11 E-value=1.4e+02 Score=21.32 Aligned_cols=56 Identities=9% Similarity=-0.062 Sum_probs=35.0
Q ss_pred hHHHHHHHHhCCCCCChhHHHHHHHHhhccCCchhHHHHhccCCCCCcccHHHHHHHHHhCC
Q 038200 5 LQIQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSNSC 66 (523)
Q Consensus 5 ~~i~~~~~~~g~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~ 66 (523)
..+++++...|+- +... .=.+.+...+.+.|.++++.++ .+..+|.+++.++...+
T Consensus 19 ~~l~d~L~s~~IL--t~~d---~EeI~~~~t~~~qa~~LLdiL~-rGp~Af~~F~esL~~~~ 74 (84)
T cd08810 19 DRHFDYLRSKRIL--TRDD---CEEISCRTTSRKQAGKLLDILA-ENPKGLDALIESIRRER 74 (84)
T ss_pred HHHHHHHHHcCCC--CHHH---HHHHhccCCcHHHHHHHHHHHh-hCchHHHHHHHHHHHcc
Confidence 3467777777765 3322 2233345566777777777777 77777777777766544
No 482
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=35.90 E-value=4.2e+02 Score=25.81 Aligned_cols=38 Identities=11% Similarity=0.147 Sum_probs=26.7
Q ss_pred CCch--HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCC
Q 038200 394 MSFE--SIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQD 431 (523)
Q Consensus 394 ~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~ 431 (523)
+.|. ..++...+..+.+.+++..|..+.++++++.|..
T Consensus 294 LQp~H~~LaLr~AM~~~~K~KNf~tAa~FArRLLel~p~~ 333 (422)
T PF06957_consen 294 LQPSHLILALRSAMSQAFKLKNFITAASFARRLLELNPSP 333 (422)
T ss_dssp --HHHHHHHHHHHHHHCCCTTBHHHHHHHHHHHHCT--SC
T ss_pred CcHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCH
Confidence 4554 3455556667889999999999999999998854
No 483
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=35.84 E-value=2.7e+02 Score=23.59 Aligned_cols=56 Identities=13% Similarity=0.221 Sum_probs=34.5
Q ss_pred HHHHHHhccccHHHHHHHHHHHHHcCC--------------CCchHHHHHHhhhhhhcCChHHHHHHHHh
Q 038200 224 SVLTACGRSARFNEGRSVHGYTVRTSL--------------KPNIILDTALIDLYSKCQKVEVAQRVFDS 279 (523)
Q Consensus 224 ~ll~~~~~~~~~~~a~~~~~~~~~~~~--------------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 279 (523)
+++-.|.+.-+|.+...+++.+.+..+ .+.-.+.|.....+.++|.++.|+.++++
T Consensus 137 S~m~~Yhk~~qW~KGrkvLd~l~el~i~ft~LKGL~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLre 206 (233)
T PF14669_consen 137 SLMYSYHKTLQWSKGRKVLDKLHELQIHFTSLKGLTGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLRE 206 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCccCccccCchhhhHHHHHHHHHHcCCchHHHHHHhc
Confidence 344456666677777777777665432 22234556666667777777777777664
No 484
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=35.53 E-value=2.1e+02 Score=26.23 Aligned_cols=165 Identities=16% Similarity=0.199 Sum_probs=77.7
Q ss_pred HHHHHhCCCCCChhHHHHHH-HHhhccCC-chhHHHHhccC-CCCCcccHHHHHHHHHhCCCchHHHHHHHHHHHCCCCC
Q 038200 9 AHLITSGLFFNNSFWTINLL-KHSADFGS-PDYTVLVFKCI-NNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMP 85 (523)
Q Consensus 9 ~~~~~~g~~~~~~~~~~~l~-~~~~~~g~-~~~A~~~~~~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p 85 (523)
+.+...|.. ++.+.+.|. ..+.+.|= ..=|.++|..- .+.+ -|.+++++.+.+--+.-+++ ++|
T Consensus 155 al~l~nGt~--~~tvl~~L~~d~LVkeGi~l~F~~~lFk~~~~Ek~---i~~lis~Lrkg~md~rLmef--------fPp 221 (412)
T KOG2297|consen 155 ALLLSNGTL--PATVLQSLLNDNLVKEGIALSFAVKLFKEWLVEKD---INDLISSLRKGKMDDRLMEF--------FPP 221 (412)
T ss_pred HHHHhCCCC--CHHHHHHHHHhhHHHHhHHHHHHHHHHHHHHhhcc---HHHHHHHHHhcChHhHHHHh--------cCC
Confidence 334455655 344444444 34445442 22255566532 2333 35666666555544444333 377
Q ss_pred CcccHHHHHHHHHccCC-----------chHHHHHHHHHHHhCCCCCchHHHHHHHHHHccCChHHHHHHH-hhcC---C
Q 038200 86 NSYTFVSLFGSCAKTGC-----------VERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMF-VQMS---P 150 (523)
Q Consensus 86 ~~~~~~~ll~~~~~~~~-----------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~-~~~~---~ 150 (523)
+..+-......+...|- ...+.+-++.. |..-..+...+++..... ++|+ -
T Consensus 222 nkrs~E~Fak~Ft~agL~elvey~~~q~~~~a~kElq~~--------------L~~q~s~e~p~~evi~~VKee~k~~nl 287 (412)
T KOG2297|consen 222 NKRSVEHFAKYFTDAGLKELVEYHRNQQSEGARKELQKE--------------LQEQVSEEDPVKEVILYVKEEMKRNNL 287 (412)
T ss_pred cchhHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHhccCCCHHHHHHHHHHHHHhcCC
Confidence 77766666655554442 22222222222 222222333333333332 2333 2
Q ss_pred CCc----chHHHHHHHHHhcC-CHHHHHHHHhcCCCCChhHHHHHHHHHHhcCCchHHHH
Q 038200 151 RDL----ISWNSIVSGHVRSG-DMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLK 205 (523)
Q Consensus 151 ~~~----~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~ 205 (523)
|++ ..|..++++--=.. .---|.+.++ ...+|..|+.+++..|+.+..+-
T Consensus 288 Pe~eVi~ivWs~iMsaveWnKkeelva~qalr-----hlK~yaPLL~af~s~g~sEL~Ll 342 (412)
T KOG2297|consen 288 PETEVIGIVWSGIMSAVEWNKKEELVAEQALR-----HLKQYAPLLAAFCSQGQSELELL 342 (412)
T ss_pred CCceEEeeeHhhhhHHHhhchHHHHHHHHHHH-----HHHhhhHHHHHHhcCChHHHHHH
Confidence 332 35776666521111 1111333333 34568889999999998876653
No 485
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=35.42 E-value=2.9e+02 Score=28.49 Aligned_cols=70 Identities=13% Similarity=0.181 Sum_probs=45.6
Q ss_pred HHHHHHHccCChHHHHHHHhhcCCC------CcchHHHHHHHHHhcCCHH------HHHHHHhcCC-CCChhHHHHHHHH
Q 038200 127 SLINMYGCFGAMDCARNMFVQMSPR------DLISWNSIVSGHVRSGDMS------AAHELFDIMP-ERNVVSWNIMISG 193 (523)
Q Consensus 127 ~l~~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~ll~~~~~~~~~~------~a~~~~~~~~-~~~~~~~~~li~~ 193 (523)
+|+.+|..+|++-.+.++++..... -...||..|+.+.+.|.++ .|.+.+++.. .-|..||..|+.+
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~ln~d~~t~all~~~ 112 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQARLNGDSLTYALLCQA 112 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhhcCCcchHHHHHHHh
Confidence 7888888888888888888877522 2356777777777777654 3344444332 2456667666665
Q ss_pred HHh
Q 038200 194 YSK 196 (523)
Q Consensus 194 ~~~ 196 (523)
...
T Consensus 113 sln 115 (1117)
T COG5108 113 SLN 115 (1117)
T ss_pred hcC
Confidence 444
No 486
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=34.94 E-value=97 Score=23.45 Aligned_cols=45 Identities=13% Similarity=0.040 Sum_probs=25.6
Q ss_pred HHHHHHhCCCchHHHHHHHHHHHCCCCCCcccHHHHHHHHHccCC
Q 038200 58 VIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGC 102 (523)
Q Consensus 58 ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~ 102 (523)
++..+...+..-.|.++++.+.+.+...+..|....++.+...|-
T Consensus 6 Il~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gl 50 (116)
T cd07153 6 ILEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGL 50 (116)
T ss_pred HHHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCC
Confidence 445555555556666666666666545555555555555555553
No 487
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=34.70 E-value=3.5e+02 Score=24.54 Aligned_cols=147 Identities=9% Similarity=0.007 Sum_probs=78.2
Q ss_pred ChHHHHHHHHHHHhCCCCCCCcCCCHHHHHHHHHHHhh----cCcHHHHHHHHHHhhHhcCCCCChHHHHHHHHHHHcCC
Q 038200 300 KPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVR----AELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAE 375 (523)
Q Consensus 300 ~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 375 (523)
+...|.++|+.+...| . | .....|...|.. ..+..+|..+|+++.+. |..+.......+...|....
T Consensus 92 ~~~~A~~~~~~~a~~g-----~-~--~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~-g~~~a~~~~~~l~~~~~~g~ 162 (292)
T COG0790 92 DKTKAADWYRCAAADG-----L-A--EALFNLGLMYANGRGVPLDLVKALKYYEKAAKL-GNVEAALAMYRLGLAYLSGL 162 (292)
T ss_pred cHHHHHHHHHHHhhcc-----c-H--HHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHc-CChhHHHHHHHHHHHHHcCh
Confidence 4556666666555544 1 1 122223333322 23667777777777764 54443222333444444321
Q ss_pred -------ChHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHH----hcCCHHHHHHHHHHHhhcCCCChhhHHHHHHHHHh
Q 038200 376 -------LTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCR----FQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAV 444 (523)
Q Consensus 376 -------~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 444 (523)
+...|...+.++... ..++.. ..+...|. ...+.++|...|+++-+.+. ......+. .+..
T Consensus 163 ~~~~~~~~~~~A~~~~~~aa~~---~~~~a~--~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~--~~a~~~~~-~~~~ 234 (292)
T COG0790 163 QALAVAYDDKKALYLYRKAAEL---GNPDAQ--LLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD--GAACYNLG-LMYL 234 (292)
T ss_pred hhhcccHHHHhHHHHHHHHHHh---cCHHHH--HHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC--HHHHHHHH-HHHh
Confidence 224688888887743 233332 23332232 23478899999999888776 44555555 5555
Q ss_pred cC---------------ChhHHHHHHHHHHhCCC
Q 038200 445 AG---------------QWEDVARVRELMKKRRM 463 (523)
Q Consensus 445 ~g---------------~~~~A~~~~~~m~~~~~ 463 (523)
.| +...|...+......+.
T Consensus 235 ~g~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 268 (292)
T COG0790 235 NGEGVKKAAFLTAAKEEDKKQALEWLQKACELGF 268 (292)
T ss_pred cCCCchhhhhcccccCCCHHHHHHHHHHHHHcCC
Confidence 55 55666666666655543
No 488
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=34.60 E-value=4.4e+02 Score=25.66 Aligned_cols=44 Identities=5% Similarity=-0.046 Sum_probs=21.5
Q ss_pred CchHHHHHHHHHHccCChHHHHHHHhhcCCCCcchHHHHHHHHH
Q 038200 121 ELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHV 164 (523)
Q Consensus 121 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~ 164 (523)
+..+...++.++...+.......+..-+..++.......+.++.
T Consensus 99 ~~~vr~aaa~ALg~i~~~~a~~~L~~~L~~~~p~vR~aal~al~ 142 (410)
T TIGR02270 99 PEGLCAGIQAALGWLGGRQAEPWLEPLLAASEPPGRAIGLAALG 142 (410)
T ss_pred CHHHHHHHHHHHhcCCchHHHHHHHHHhcCCChHHHHHHHHHHH
Confidence 44455555666655555555444444444444444444444443
No 489
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=34.40 E-value=2.2e+02 Score=22.11 Aligned_cols=45 Identities=7% Similarity=0.084 Sum_probs=28.4
Q ss_pred HHHHHHHhCCCCCCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 038200 379 EAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSF 424 (523)
Q Consensus 379 ~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 424 (523)
++.++|+.|..++-|. --+..|......+...|++++|.++++..
T Consensus 81 ~~~~if~~l~~~~IG~-~~A~fY~~wA~~le~~~~~~~A~~I~~~G 125 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGT-KLALFYEEWAEFLEKRGNFKKADEIYQLG 125 (126)
T ss_dssp HHHHHHHHHHHHTTST-TBHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccH-HHHHHHHHHHHHHHHcCCHHHHHHHHHhh
Confidence 7777777776544332 23455666666677778888888777764
No 490
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=33.21 E-value=2.5e+02 Score=22.45 Aligned_cols=60 Identities=8% Similarity=0.014 Sum_probs=28.1
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHcCCCCchHHHHHHhhhhhhcC
Q 038200 208 REMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQ 268 (523)
Q Consensus 208 ~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 268 (523)
+.+.+.|++++.. -..++..+...++.-.|.++|+.+.+.+...+..|...-++.+...|
T Consensus 10 ~~lk~~glr~T~q-R~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~G 69 (145)
T COG0735 10 ERLKEAGLRLTPQ-RLAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAG 69 (145)
T ss_pred HHHHHcCCCcCHH-HHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCC
Confidence 3444455544432 22344444444444556666666666554444433333344444444
No 491
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=32.78 E-value=3.1e+02 Score=23.29 Aligned_cols=57 Identities=16% Similarity=0.250 Sum_probs=35.8
Q ss_pred HHHHHHHhhcCcHHHHHHHHHHhhHhcCC--------------CCChHHHHHHHHHHHcCCChHHHHHHHHh
Q 038200 329 IGVICACVRAELLTEGRKYFRQMIDFYKI--------------KPNFAHYWCMANLYAGAELTEEAEEILRK 386 (523)
Q Consensus 329 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--------------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 386 (523)
.+++..|-+.-++.++.++++.+.+. .+ .+.-...+.-...+.++|..+.|+.++++
T Consensus 136 iS~m~~Yhk~~qW~KGrkvLd~l~el-~i~ft~LKGL~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLre 206 (233)
T PF14669_consen 136 ISLMYSYHKTLQWSKGRKVLDKLHEL-QIHFTSLKGLTGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLRE 206 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-hhhhhhccCccCccccCchhhhHHHHHHHHHHcCCchHHHHHHhc
Confidence 34566677777888888888877663 22 22334445555666667777777766664
No 492
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=32.65 E-value=1.9e+02 Score=20.73 Aligned_cols=42 Identities=19% Similarity=0.174 Sum_probs=26.9
Q ss_pred HHHHHHHHhCCCCCchHHHHHHHHHHccCChHHHHHHHhhcC
Q 038200 108 MCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMS 149 (523)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 149 (523)
++|+.....|+..|..+|..+++...-+=..+...++++.|.
T Consensus 29 EL~ELa~~AGv~~dp~VFriildLL~~nVsP~AI~qmLK~m~ 70 (88)
T PF12926_consen 29 ELYELAQLAGVPMDPEVFRIILDLLRLNVSPDAIFQMLKSMC 70 (88)
T ss_pred HHHHHHHHhCCCcChHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 566666666666677777766666665555666666666554
No 493
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=32.52 E-value=4.1e+02 Score=24.67 Aligned_cols=223 Identities=10% Similarity=-0.011 Sum_probs=0.0
Q ss_pred HHHHhhhhhhcCChHHHHHHHHhcCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcCCCHHHHHHHHHHHh
Q 038200 257 DTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACV 336 (523)
Q Consensus 257 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~ll~~~~ 336 (523)
|..+-.++...+-.+........+.-.....-.-++.+--..--+.+|.++|++..+.+ =..|.
T Consensus 188 ~eIMQ~AWRERnp~~RI~~A~~ALeIN~eCA~AyvLLAEEEa~Ti~~AE~l~k~ALka~----------------e~~yr 251 (556)
T KOG3807|consen 188 DEIMQKAWRERNPPARIKAAYQALEINNECATAYVLLAEEEATTIVDAERLFKQALKAG----------------ETIYR 251 (556)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHhcCchhhhHHHhhhhhhhhhHHHHHHHHHHHHHHH----------------HHHHh
Q ss_pred hcCcHHHHHHHHHHhhHhcCCCCChHHHHHHHHHHHcCCChHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHhcCCHHH
Q 038200 337 RAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAM 416 (523)
Q Consensus 337 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 416 (523)
+......--...+.+.++ ....-+..-..|..+..+.|+..+|.+.++++.+ ...+..-..+...++.+|....-+..
T Consensus 252 ~sqq~qh~~~~~da~~rR-Dtnvl~YIKRRLAMCARklGrlrEA~K~~RDL~k-e~pl~t~lniheNLiEalLE~QAYAD 329 (556)
T KOG3807|consen 252 QSQQCQHQSPQHEAQLRR-DTNVLVYIKRRLAMCARKLGRLREAVKIMRDLMK-EFPLLTMLNIHENLLEALLELQAYAD 329 (556)
T ss_pred hHHHHhhhccchhhhhhc-ccchhhHHHHHHHHHHHHhhhHHHHHHHHHHHhh-hccHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCCceeEEEeCCeEEEEecCCCCchHHHHHHH
Q 038200 417 VERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLKEVVEKLKVGHFWRGGMKEEVN 496 (523)
Q Consensus 417 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 496 (523)
...++-+..++.- ..++-...-.++.+..-..+-. .-+...++|++... ..+++.+.
T Consensus 330 vqavLakYDdisl-PkSA~icYTaALLK~RAVa~kF-spd~asrRGLS~AE---------------------~~AvEAih 386 (556)
T KOG3807|consen 330 VQAVLAKYDDISL-PKSAAICYTAALLKTRAVSEKF-SPETASRRGLSTAE---------------------INAVEAIH 386 (556)
T ss_pred HHHHHHhhccccC-cchHHHHHHHHHHHHHHHHhhc-CchhhhhccccHHH---------------------HHHHHHHH
Q ss_pred HHHhcccCCccccccccccccccC
Q 038200 497 KMMECRQSRSLATVSKQLPWHKNE 520 (523)
Q Consensus 497 ~~~~~~~~~~~~~~~~~~~~~~~~ 520 (523)
+.++-+|+-+.-+...+-.--|||
T Consensus 387 RAvEFNPHVPkYLLE~kslIlPPE 410 (556)
T KOG3807|consen 387 RAVEFNPHVPKYLLEMKSLILPPE 410 (556)
T ss_pred HHhhcCCCCcHHHHHHHhccCCHH
No 494
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=32.20 E-value=3.6e+02 Score=23.84 Aligned_cols=59 Identities=2% Similarity=-0.066 Sum_probs=41.1
Q ss_pred HHHHHHHhcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHh-ccccHHHHHHHHHHHHH
Q 038200 189 IMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACG-RSARFNEGRSVHGYTVR 247 (523)
Q Consensus 189 ~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~-~~~~~~~a~~~~~~~~~ 247 (523)
.++..+-+.|+++++..+++++...+...+..-.+.+..+|- ..|....+.+++..+.+
T Consensus 6 ~~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e~ 65 (236)
T PF00244_consen 6 YLAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSIEQ 65 (236)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhHhh
Confidence 466778889999999999999999877777777777766663 34555666666665554
No 495
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=32.18 E-value=4.3e+02 Score=24.75 Aligned_cols=124 Identities=10% Similarity=0.037 Sum_probs=80.2
Q ss_pred CChHHHHHHHHHHHhCCCCCCCcCCCHHHHHHHHHHHhh------cCcHHHHHHHHHHhhHhcCCCCChHHHHHHHHHHH
Q 038200 299 GKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVR------AELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYA 372 (523)
Q Consensus 299 g~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~ll~~~~~------~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 372 (523)
+-++++..++.+....+ .|.+......|.++-. .-++.....+|+.+.. +.|++..-..=.-+..
T Consensus 270 ~lI~eg~all~rA~~~~------~pGPYqlqAAIaa~HA~a~~aedtDW~~I~aLYdaL~~---~apSPvV~LNRAVAla 340 (415)
T COG4941 270 ALIDEGLALLDRALASR------RPGPYQLQAAIAALHARARRAEDTDWPAIDALYDALEQ---AAPSPVVTLNRAVALA 340 (415)
T ss_pred HHHHHHHHHHHHHHHcC------CCChHHHHHHHHHHHHhhcccCCCChHHHHHHHHHHHH---hCCCCeEeehHHHHHH
Confidence 34578889999988887 5888888888877632 3467777777877765 4455433222233444
Q ss_pred cCCChHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCh
Q 038200 373 GAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDF 432 (523)
Q Consensus 373 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~ 432 (523)
+..-.+.++.+++-+...+ ...--...+..-...+.+.|..++|...|++++.+.++..
T Consensus 341 ~~~Gp~agLa~ve~L~~~~-~L~gy~~~h~~RadlL~rLgr~~eAr~aydrAi~La~~~a 399 (415)
T COG4941 341 MREGPAAGLAMVEALLARP-RLDGYHLYHAARADLLARLGRVEEARAAYDRAIALARNAA 399 (415)
T ss_pred HhhhHHhHHHHHHHhhccc-ccccccccHHHHHHHHHHhCChHHHHHHHHHHHHhcCChH
Confidence 5555677888887777431 1111111222234457889999999999999999887544
No 496
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=32.04 E-value=2.4e+02 Score=21.79 Aligned_cols=57 Identities=7% Similarity=-0.077 Sum_probs=28.8
Q ss_pred HHHHHHHHhcCCHHHHHH-------HHHHHhhcCCCChhhH----HHHHHHHHhcCChhHHHHHHHHH
Q 038200 402 VSLLSLCRFQGAVAMVER-------LAKSFVDMDPQDFSRY----QFLLNVYAVAGQWEDVARVRELM 458 (523)
Q Consensus 402 ~~l~~~~~~~g~~~~a~~-------~~~~~~~~~p~~~~~~----~~l~~~~~~~g~~~~A~~~~~~m 458 (523)
..|..++...|++++++. +|++=-++..+.-..| ..-+.++...|+.++|...|+..
T Consensus 59 A~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~a 126 (144)
T PF12968_consen 59 AGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMA 126 (144)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHH
Confidence 333344444444444333 3333334555433333 34456778889999999888743
No 497
>PRK09857 putative transposase; Provisional
Probab=32.01 E-value=2.6e+02 Score=25.64 Aligned_cols=64 Identities=8% Similarity=0.126 Sum_probs=43.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCccC
Q 038200 403 SLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRM 466 (523)
Q Consensus 403 ~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~ 466 (523)
.++......++.++..++++.+.+..|.......+++.-+.+.|.-+++.++..+|...|+...
T Consensus 211 ~ll~Yi~~~~~~~~~~~~~~~l~~~~~~~~e~iMTiAEqL~qeG~qe~~~~ia~~ml~~g~~~~ 274 (292)
T PRK09857 211 GLFNYILQTGDAVRFNDFIDGVAERSPKHKESLMTIAERLRQEGEQSKALHIAKIMLESGVPLA 274 (292)
T ss_pred HHHHHHhhccccchHHHHHHHHHHhCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH
Confidence 3444334556666666666666665555445566777777777877788888888888887543
No 498
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=31.44 E-value=80 Score=33.31 Aligned_cols=123 Identities=15% Similarity=0.138 Sum_probs=0.0
Q ss_pred cCChHHHHHHHHHHHhCCCCCCCcCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhHhcCCCCChHHHHHHHHHHHcCCCh
Q 038200 298 HGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELT 377 (523)
Q Consensus 298 ~g~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 377 (523)
.+++++.+.+.+...--| .++|..+-+.|..+-|+.+.+.=..+ ......+|++
T Consensus 606 ~k~ydeVl~lI~ns~LvG-------------qaiIaYLqKkgypeiAL~FVkD~~tR-------------F~LaLe~gnl 659 (1202)
T KOG0292|consen 606 NKKYDEVLHLIKNSNLVG-------------QAIIAYLQKKGYPEIALHFVKDERTR-------------FELALECGNL 659 (1202)
T ss_pred hhhhHHHHHHHHhcCccc-------------HHHHHHHHhcCCcceeeeeecCcchh-------------eeeehhcCCH
Q ss_pred HHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHH
Q 038200 378 EEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVREL 457 (523)
Q Consensus 378 ~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 457 (523)
+.|++.-+++- |..+|..|......+|+.+-|+..|++.. .|..|.-.|.-.|+.++-.++.+.
T Consensus 660 e~ale~akkld--------d~d~w~rLge~Al~qgn~~IaEm~yQ~~k--------nfekLsfLYliTgn~eKL~Km~~i 723 (1202)
T KOG0292|consen 660 EVALEAAKKLD--------DKDVWERLGEEALRQGNHQIAEMCYQRTK--------NFEKLSFLYLITGNLEKLSKMMKI 723 (1202)
T ss_pred HHHHHHHHhcC--------cHHHHHHHHHHHHHhcchHHHHHHHHHhh--------hhhheeEEEEEeCCHHHHHHHHHH
Q ss_pred HHhCC
Q 038200 458 MKKRR 462 (523)
Q Consensus 458 m~~~~ 462 (523)
...++
T Consensus 724 ae~r~ 728 (1202)
T KOG0292|consen 724 AEIRN 728 (1202)
T ss_pred HHhhh
No 499
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=31.21 E-value=6.2e+02 Score=26.29 Aligned_cols=190 Identities=14% Similarity=0.159 Sum_probs=92.1
Q ss_pred hcCChHHHHHHHHhcCC-----CC-----hHHHHHHHH--HHHhcCChHHHHHHHH--------HHHhCCCCCCCcCCCH
Q 038200 266 KCQKVEVAQRVFDSMAD-----RN-----LVCWNAMIL--GHCIHGKPEEGIKLFT--------ALVNGTVAGGSISPDE 325 (523)
Q Consensus 266 ~~~~~~~a~~~~~~~~~-----~~-----~~~~~~li~--~~~~~g~~~~a~~~~~--------~m~~~~~~~~~~~p~~ 325 (523)
-.+++..|...+..+.+ ++ ...+..++. .+...|+.+.|+..|. .....+ ...+.
T Consensus 373 ~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~~~~~~~-----~~~El 447 (608)
T PF10345_consen 373 IRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCEAANRKS-----KFREL 447 (608)
T ss_pred HCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhhhhccCC-----cchHH
Confidence 45778888888887753 11 123333333 3456799999999997 333333 33333
Q ss_pred HHHHHH--HHHHh--hcCcHHH--HHHHHHHhhHhcCCCCC--hHHHHH-HHHHHHcCC--ChHHHHHHHHhCCCCC-CC
Q 038200 326 ITFIGV--ICACV--RAELLTE--GRKYFRQMIDFYKIKPN--FAHYWC-MANLYAGAE--LTEEAEEILRKMPEDN-DN 393 (523)
Q Consensus 326 ~~~~~l--l~~~~--~~~~~~~--a~~~~~~~~~~~~~~~~--~~~~~~-l~~~~~~~g--~~~~A~~~~~~~~~~~-~~ 393 (523)
.++..| +..+. .....++ +.++++.+.......|+ ..++.. ++.++...- ...++...+.+..+.. ..
T Consensus 448 ~ila~LNl~~I~~~~~~~~~~~~~~~~l~~~i~p~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ne~k~~l~~~L~~~~~~ 527 (608)
T PF10345_consen 448 YILAALNLAIILQYESSRDDSESELNELLEQIEPLCSNSPNSYNRTAYCLVLATYNTFEPFSSNEAKRHLQEALKMANNK 527 (608)
T ss_pred HHHHHHHHHHHhHhhcccchhhhHHHHHHHhcCccccCCccHHHHHHHHHHHHHHhhCCccccHHHHHHHHHHHHHHHHh
Confidence 333221 11122 2222333 77777777653233333 223333 333332211 1124443333322110 00
Q ss_pred CCch--HHHHHHHHHHHHhcCCHHHHHHHHHHHhhc---CCC-ChhhHH-----HHHHHHHhcCChhHHHHHHHHHHh
Q 038200 394 MSFE--SIMWVSLLSLCRFQGAVAMVERLAKSFVDM---DPQ-DFSRYQ-----FLLNVYAVAGQWEDVARVRELMKK 460 (523)
Q Consensus 394 ~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~p~-~~~~~~-----~l~~~~~~~g~~~~A~~~~~~m~~ 460 (523)
.... ......++..-.-.|+..+........... .|+ ....|. .+...|...|+.++|.....+...
T Consensus 528 ~~n~~l~~~~L~lm~~~lf~~~~~e~~~~s~~a~~~A~k~~d~~~~LW~~v~~~~l~~~~~~~G~~~ka~~~~~~~~~ 605 (608)
T PF10345_consen 528 LGNSQLLAILLNLMGHRLFEGDVGEQAKKSARAFQLAKKSSDYSDQLWHLVASGMLADSYEVQGDRDKAEEARQQLDR 605 (608)
T ss_pred hccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHH
Confidence 1111 122223333322267777766665555442 232 223442 455568889999999998887643
No 500
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=31.05 E-value=2.2e+02 Score=21.04 Aligned_cols=60 Identities=15% Similarity=0.064 Sum_probs=38.1
Q ss_pred HHHHHHHHHHhhHhcCCCCChHHHHHHHHHHHcCCChHHHHHHHHhCCCCCCCCCchHHHHHHHH
Q 038200 341 LTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLL 405 (523)
Q Consensus 341 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~ 405 (523)
.....+.++++... +....+-....|.-.|.+.|+.+.|.+-|+.=.. .-|...+|.-++
T Consensus 53 ~~~le~~~ek~~ak-~~~vpPG~HAhLGlLys~~G~~e~a~~eFetEKa----lFPES~~fmDFL 112 (121)
T COG4259 53 TAALEKYLEKIGAK-NGAVPPGYHAHLGLLYSNSGKDEQAVREFETEKA----LFPESGVFMDFL 112 (121)
T ss_pred HHHHHHHHHHHhhc-CCCCCCcHHHHHHHHHhhcCChHHHHHHHHHhhh----hCccchhHHHHH
Confidence 34445667777665 3333334445677788899999999998887653 456655554443
Done!