Query 038200
Match_columns 523
No_of_seqs 624 out of 3442
Neff 11.3
Searched_HMMs 29240
Date Mon Mar 25 14:34:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038200.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/038200hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpi_A Anaphase-promoting comp 100.0 3.7E-40 1.3E-44 336.0 33.5 431 19-461 82-579 (597)
2 2xpi_A Anaphase-promoting comp 100.0 1E-38 3.5E-43 325.3 33.0 428 2-444 101-596 (597)
3 1w3b_A UDP-N-acetylglucosamine 100.0 2.5E-29 8.6E-34 241.6 39.5 374 59-447 6-388 (388)
4 1w3b_A UDP-N-acetylglucosamine 100.0 5.6E-28 1.9E-32 232.2 37.2 354 93-461 5-368 (388)
5 4g26_A Pentatricopeptide repea 100.0 3.7E-28 1.3E-32 237.4 22.0 184 185-374 27-223 (501)
6 4g26_A Pentatricopeptide repea 100.0 1.8E-27 6.3E-32 232.5 20.7 203 201-411 7-223 (501)
7 2gw1_A Mitochondrial precursor 99.9 1.3E-25 4.4E-30 224.1 31.1 428 22-462 7-479 (514)
8 2gw1_A Mitochondrial precursor 99.9 4.9E-25 1.7E-29 219.9 28.9 421 2-438 23-489 (514)
9 3fp2_A TPR repeat-containing p 99.9 6.2E-24 2.1E-28 213.2 33.7 424 21-462 25-492 (537)
10 2y4t_A DNAJ homolog subfamily 99.9 1.2E-23 4E-28 206.3 31.1 327 86-457 25-405 (450)
11 2y4t_A DNAJ homolog subfamily 99.9 1.8E-23 6.2E-28 204.9 31.2 377 39-451 10-444 (450)
12 3fp2_A TPR repeat-containing p 99.9 1.8E-23 6E-28 209.9 18.6 437 52-510 25-500 (537)
13 3ieg_A DNAJ homolog subfamily 99.9 3.2E-20 1.1E-24 175.8 29.7 317 87-445 3-353 (359)
14 3ieg_A DNAJ homolog subfamily 99.9 7.1E-20 2.4E-24 173.3 30.8 295 154-461 4-335 (359)
15 3hym_B Cell division cycle pro 99.9 2.4E-19 8.4E-24 167.6 26.4 284 155-449 24-322 (330)
16 1fch_A Peroxisomal targeting s 99.8 8.2E-20 2.8E-24 173.8 22.5 258 185-457 65-355 (368)
17 2xm6_A Protein corresponding t 99.8 1.9E-17 6.5E-22 163.7 38.7 376 40-444 26-452 (490)
18 3hym_B Cell division cycle pro 99.8 8.8E-19 3E-23 163.8 26.4 269 182-460 20-298 (330)
19 2xm6_A Protein corresponding t 99.8 9.6E-17 3.3E-21 158.7 40.2 363 70-463 25-434 (490)
20 1b89_A Protein (clathrin heavy 99.8 5.5E-19 1.9E-23 164.6 22.2 288 32-388 14-309 (449)
21 2ooe_A Cleavage stimulation fa 99.8 4.1E-17 1.4E-21 163.0 37.6 410 18-461 10-492 (530)
22 2ooe_A Cleavage stimulation fa 99.8 3.5E-17 1.2E-21 163.5 35.6 399 2-430 29-495 (530)
23 4eqf_A PEX5-related protein; a 99.8 3.7E-19 1.3E-23 169.1 19.5 264 183-457 64-352 (365)
24 1xi4_A Clathrin heavy chain; a 99.8 3.2E-16 1.1E-20 162.6 40.9 381 19-453 983-1376(1630)
25 3mkr_A Coatomer subunit epsilo 99.8 2.6E-17 8.9E-22 150.2 28.7 273 161-455 7-288 (291)
26 3cv0_A Peroxisome targeting si 99.8 6.1E-18 2.1E-22 157.8 21.1 260 186-458 23-312 (327)
27 1fch_A Peroxisomal targeting s 99.8 9.5E-18 3.3E-22 159.4 21.5 287 65-387 38-356 (368)
28 4g1t_A Interferon-induced prot 99.8 4.6E-17 1.6E-21 160.4 27.1 378 52-463 51-461 (472)
29 1b89_A Protein (clathrin heavy 99.8 1E-16 3.6E-21 149.4 25.5 265 19-307 30-304 (449)
30 4eqf_A PEX5-related protein; a 99.8 3.4E-17 1.2E-21 155.5 21.8 233 218-461 64-310 (365)
31 3mkr_A Coatomer subunit epsilo 99.8 5E-17 1.7E-21 148.3 21.9 249 191-462 6-265 (291)
32 1xi4_A Clathrin heavy chain; a 99.8 1.3E-14 4.4E-19 150.8 40.3 398 4-456 1004-1440(1630)
33 3cv0_A Peroxisome targeting si 99.7 4.7E-17 1.6E-21 151.8 18.2 263 155-427 23-315 (327)
34 4g1t_A Interferon-induced prot 99.7 8.2E-16 2.8E-20 151.4 25.3 381 19-439 49-471 (472)
35 3uq3_A Heat shock protein STI1 99.7 9.7E-16 3.3E-20 137.5 22.3 228 186-461 7-236 (258)
36 3uq3_A Heat shock protein STI1 99.7 4.6E-16 1.6E-20 139.6 18.6 237 153-440 5-255 (258)
37 3spa_A Mtrpol, DNA-directed RN 99.7 6.1E-18 2.1E-22 170.1 6.0 148 20-167 126-286 (1134)
38 2pl2_A Hypothetical conserved 99.7 8.4E-16 2.9E-20 134.0 18.0 197 251-459 2-212 (217)
39 1xnf_A Lipoprotein NLPI; TPR, 99.7 1.8E-15 6.2E-20 137.2 18.5 246 196-455 17-269 (275)
40 3spa_A Mtrpol, DNA-directed RN 99.7 4.2E-17 1.5E-21 164.0 8.2 143 153-299 127-286 (1134)
41 3u4t_A TPR repeat-containing p 99.7 5.7E-15 1.9E-19 133.8 19.5 251 186-446 5-269 (272)
42 3e4b_A ALGK; tetratricopeptide 99.6 1.8E-14 6.1E-19 140.2 22.0 377 27-460 9-420 (452)
43 2h6f_A Protein farnesyltransfe 99.6 4.4E-14 1.5E-18 133.2 22.5 249 183-445 96-366 (382)
44 3e4b_A ALGK; tetratricopeptide 99.6 6.2E-14 2.1E-18 136.4 22.8 332 2-389 20-386 (452)
45 2ho1_A Type 4 fimbrial biogene 99.6 1.4E-13 4.9E-18 122.9 23.1 139 286-434 106-245 (252)
46 2q7f_A YRRB protein; TPR, prot 99.6 1.1E-14 3.9E-19 129.3 15.4 144 285-439 91-234 (243)
47 2ho1_A Type 4 fimbrial biogene 99.6 1E-13 3.4E-18 123.9 21.2 199 254-462 37-239 (252)
48 2q7f_A YRRB protein; TPR, prot 99.6 2.6E-14 9E-19 126.9 17.1 199 253-462 22-223 (243)
49 4e6h_A MRNA 3'-END-processing 99.6 7.1E-12 2.4E-16 126.1 36.4 413 18-441 63-583 (679)
50 1ouv_A Conserved hypothetical 99.6 8.1E-13 2.8E-17 119.6 26.8 224 183-462 5-252 (273)
51 4a1s_A PINS, partner of inscut 99.6 1.2E-14 4.1E-19 140.2 15.4 274 186-461 50-372 (411)
52 3sf4_A G-protein-signaling mod 99.6 3.6E-14 1.2E-18 136.5 18.3 275 184-460 9-335 (406)
53 2vq2_A PILW, putative fimbrial 99.6 1.6E-13 5.5E-18 120.1 20.6 194 257-460 11-210 (225)
54 3u4t_A TPR repeat-containing p 99.6 9.1E-14 3.1E-18 125.8 19.5 229 221-461 5-250 (272)
55 2vq2_A PILW, putative fimbrial 99.6 2.2E-13 7.6E-18 119.2 21.2 208 220-438 9-222 (225)
56 2pl2_A Hypothetical conserved 99.6 1.2E-13 4.3E-18 120.1 19.4 206 183-423 4-210 (217)
57 1ouv_A Conserved hypothetical 99.6 1.1E-12 3.8E-17 118.7 26.0 230 151-430 4-254 (273)
58 2ond_A Cleavage stimulation fa 99.6 3.6E-13 1.2E-17 124.2 22.4 249 236-515 33-306 (308)
59 2h6f_A Protein farnesyltransfe 99.6 8.2E-14 2.8E-18 131.4 18.2 229 219-461 97-348 (382)
60 3ro2_A PINS homolog, G-protein 99.6 2.9E-14 1E-18 133.1 15.0 274 186-461 7-332 (338)
61 3vtx_A MAMA; tetratricopeptide 99.6 3.4E-13 1.2E-17 114.1 20.0 168 284-462 4-171 (184)
62 3sf4_A G-protein-signaling mod 99.6 2.1E-14 7.3E-19 138.1 12.6 261 186-450 49-365 (406)
63 4abn_A Tetratricopeptide repea 99.5 5.8E-14 2E-18 137.5 15.6 209 235-457 84-317 (474)
64 1xnf_A Lipoprotein NLPI; TPR, 99.5 3.7E-14 1.3E-18 128.6 12.8 243 64-348 17-269 (275)
65 4a1s_A PINS, partner of inscut 99.5 1.2E-12 4E-17 126.2 20.8 284 90-429 51-374 (411)
66 4e6h_A MRNA 3'-END-processing 99.5 1.1E-10 3.7E-15 117.5 34.2 408 49-462 63-571 (679)
67 2ond_A Cleavage stimulation fa 99.5 1.7E-11 5.8E-16 113.0 25.3 223 201-433 33-276 (308)
68 3ulq_A Response regulator aspa 99.5 6.1E-13 2.1E-17 126.9 16.1 236 225-461 109-368 (383)
69 3ro2_A PINS homolog, G-protein 99.5 3E-12 1E-16 119.3 19.9 197 92-313 10-251 (338)
70 3vtx_A MAMA; tetratricopeptide 99.5 1.9E-12 6.7E-17 109.4 16.0 169 253-432 4-175 (184)
71 3nf1_A KLC 1, kinesin light ch 99.5 3.3E-13 1.1E-17 124.5 11.6 248 184-461 27-307 (311)
72 3ulq_A Response regulator aspa 99.4 3.8E-12 1.3E-16 121.4 18.5 233 190-428 109-369 (383)
73 3nf1_A KLC 1, kinesin light ch 99.4 6.2E-13 2.1E-17 122.7 11.8 246 152-430 26-310 (311)
74 4gyw_A UDP-N-acetylglucosamine 99.4 4.6E-12 1.6E-16 129.0 18.9 164 284-460 8-173 (723)
75 3as5_A MAMA; tetratricopeptide 99.4 7.1E-12 2.4E-16 105.7 17.3 164 287-461 10-173 (186)
76 1hz4_A MALT regulatory protein 99.4 2E-10 6.9E-15 108.9 29.1 303 188-504 18-352 (373)
77 4abn_A Tetratricopeptide repea 99.4 1.1E-11 3.6E-16 121.4 16.9 208 169-388 84-319 (474)
78 4i17_A Hypothetical protein; T 99.4 6.9E-11 2.4E-15 103.6 19.7 206 217-442 5-224 (228)
79 3q15_A PSP28, response regulat 99.4 2E-10 6.8E-15 109.2 24.3 227 189-426 106-364 (378)
80 3q15_A PSP28, response regulat 99.4 1.1E-11 3.7E-16 118.0 15.3 237 223-460 105-364 (378)
81 3as5_A MAMA; tetratricopeptide 99.3 5.4E-11 1.8E-15 100.2 17.5 169 254-433 8-179 (186)
82 4i17_A Hypothetical protein; T 99.3 4.8E-11 1.6E-15 104.6 17.1 125 255-388 8-144 (228)
83 1hz4_A MALT regulatory protein 99.3 2.3E-09 7.8E-14 101.6 26.9 270 58-353 20-321 (373)
84 1qqe_A Vesicular transport pro 99.3 8.6E-11 2.9E-15 107.2 15.9 210 234-458 32-266 (292)
85 1qqe_A Vesicular transport pro 99.2 3.6E-10 1.2E-14 103.1 17.2 213 191-436 44-278 (292)
86 3edt_B KLC 2, kinesin light ch 99.2 3.3E-10 1.1E-14 102.6 15.8 231 230-460 12-280 (283)
87 3qky_A Outer membrane assembly 99.2 5.8E-10 2E-14 99.9 16.5 192 253-450 14-250 (261)
88 3mv2_B Coatomer subunit epsilo 99.2 4E-09 1.4E-13 94.3 21.3 140 238-388 85-238 (310)
89 4gyw_A UDP-N-acetylglucosamine 99.2 2.2E-10 7.4E-15 116.8 14.2 160 254-426 9-173 (723)
90 3edt_B KLC 2, kinesin light ch 99.2 1E-09 3.4E-14 99.4 17.1 228 197-427 14-281 (283)
91 3mv2_B Coatomer subunit epsilo 99.2 5.4E-09 1.9E-13 93.4 20.9 176 273-462 85-283 (310)
92 3qky_A Outer membrane assembly 99.2 2E-09 6.9E-14 96.4 18.3 173 282-461 12-224 (261)
93 2yhc_A BAMD, UPF0169 lipoprote 99.1 3.9E-09 1.3E-13 92.1 19.5 165 288-463 7-215 (225)
94 2fo7_A Synthetic consensus TPR 99.1 1E-09 3.5E-14 86.8 14.1 130 327-461 3-132 (136)
95 4ga2_A E3 SUMO-protein ligase 99.1 7.2E-11 2.4E-15 95.8 7.3 144 291-447 3-149 (150)
96 2fo7_A Synthetic consensus TPR 99.1 3.3E-09 1.1E-13 83.8 15.1 133 287-430 3-135 (136)
97 3qou_A Protein YBBN; thioredox 99.1 2.6E-09 8.9E-14 97.0 16.0 177 270-459 102-282 (287)
98 2pzi_A Probable serine/threoni 99.1 4.5E-10 1.5E-14 115.0 12.1 149 230-389 402-562 (681)
99 2uy1_A Cleavage stimulation fa 99.0 3E-07 1E-11 89.8 29.8 203 201-426 196-412 (493)
100 2vsy_A XCC0866; transferase, g 99.0 4.3E-09 1.5E-13 105.8 16.2 162 267-439 2-169 (568)
101 3urz_A Uncharacterized protein 99.0 1.2E-08 4E-13 87.8 16.1 181 221-430 6-189 (208)
102 4ga2_A E3 SUMO-protein ligase 99.0 7.1E-10 2.4E-14 89.8 7.8 126 331-461 3-129 (150)
103 3rjv_A Putative SEL1 repeat pr 99.0 4.7E-08 1.6E-12 84.2 19.5 173 273-463 5-199 (212)
104 2r5s_A Uncharacterized protein 99.0 4.1E-09 1.4E-13 88.0 12.1 159 289-460 10-172 (176)
105 2pzi_A Probable serine/threoni 99.0 1.9E-08 6.4E-13 103.0 19.1 170 265-446 402-582 (681)
106 2ifu_A Gamma-SNAP; membrane fu 99.0 5.7E-09 1.9E-13 95.9 13.4 227 196-453 3-253 (307)
107 2vsy_A XCC0866; transferase, g 98.9 1.3E-08 4.5E-13 102.3 16.0 150 232-390 2-157 (568)
108 2yhc_A BAMD, UPF0169 lipoprote 98.9 1.7E-08 5.9E-13 87.9 14.6 190 220-433 5-219 (225)
109 4gco_A Protein STI-1; structur 98.9 9.3E-09 3.2E-13 80.2 11.5 116 321-441 8-124 (126)
110 3u3w_A Transcriptional activat 98.9 2.7E-07 9.3E-12 83.9 22.8 169 288-460 78-265 (293)
111 2qfc_A PLCR protein; TPR, HTH, 98.9 5.6E-08 1.9E-12 88.6 17.3 170 286-460 76-265 (293)
112 3gyz_A Chaperone protein IPGC; 98.9 8.3E-09 2.8E-13 83.1 10.3 103 357-462 31-134 (151)
113 3urz_A Uncharacterized protein 98.9 1.5E-08 5E-13 87.2 12.6 160 288-461 7-186 (208)
114 3dra_A Protein farnesyltransfe 98.9 2.5E-07 8.7E-12 83.6 20.9 228 198-436 47-297 (306)
115 3dra_A Protein farnesyltransfe 98.9 1.3E-06 4.3E-11 79.0 25.4 215 234-460 48-286 (306)
116 1hh8_A P67PHOX, NCF-2, neutrop 98.9 5.4E-08 1.8E-12 83.9 15.4 121 332-460 13-149 (213)
117 3rjv_A Putative SEL1 repeat pr 98.9 1.7E-07 5.9E-12 80.6 18.4 159 182-354 16-197 (212)
118 3qou_A Protein YBBN; thioredox 98.9 1.1E-07 3.7E-12 86.3 17.4 166 216-388 114-282 (287)
119 1a17_A Serine/threonine protei 98.9 4.4E-08 1.5E-12 80.5 13.6 130 326-460 14-145 (166)
120 2ifu_A Gamma-SNAP; membrane fu 98.9 9.8E-08 3.4E-12 87.5 17.1 231 165-419 3-253 (307)
121 2vgx_A Chaperone SYCD; alterna 98.8 8.3E-09 2.8E-13 83.2 8.3 99 360-461 20-118 (148)
122 4gco_A Protein STI-1; structur 98.8 3E-08 1E-12 77.3 11.2 102 357-461 8-110 (126)
123 2r5s_A Uncharacterized protein 98.8 1.4E-07 4.8E-12 78.5 16.1 153 125-278 9-168 (176)
124 2lni_A Stress-induced-phosphop 98.8 5E-08 1.7E-12 76.7 12.3 121 322-447 13-133 (133)
125 1na0_A Designed protein CTPR3; 98.8 7E-08 2.4E-12 74.8 12.7 117 325-446 9-125 (125)
126 2vyi_A SGTA protein; chaperone 98.8 6.7E-08 2.3E-12 75.6 12.6 121 324-449 11-131 (131)
127 1hh8_A P67PHOX, NCF-2, neutrop 98.8 2E-07 6.7E-12 80.3 16.5 144 258-431 10-154 (213)
128 2c2l_A CHIP, carboxy terminus 98.8 1.6E-08 5.6E-13 91.3 8.8 189 255-460 5-198 (281)
129 1p5q_A FKBP52, FK506-binding p 98.7 6.9E-08 2.4E-12 89.7 12.6 129 327-460 149-293 (336)
130 2e2e_A Formate-dependent nitri 98.7 2.8E-08 9.6E-13 82.9 9.0 123 335-462 20-145 (177)
131 2xcb_A PCRH, regulatory protei 98.7 4.8E-08 1.6E-12 78.1 9.4 99 360-461 17-115 (142)
132 4f3v_A ESX-1 secretion system 98.7 1.1E-06 3.8E-11 77.5 18.8 196 231-439 18-248 (282)
133 2uy1_A Cleavage stimulation fa 98.7 1.7E-06 5.9E-11 84.5 21.2 360 64-460 6-412 (493)
134 3upv_A Heat shock protein STI1 98.7 1.3E-07 4.5E-12 73.7 10.5 97 362-461 5-101 (126)
135 2vgx_A Chaperone SYCD; alterna 98.7 7.8E-08 2.7E-12 77.4 9.1 109 322-435 17-126 (148)
136 2kck_A TPR repeat; tetratricop 98.7 1.5E-07 5.2E-12 71.3 10.2 100 360-462 5-107 (112)
137 2qfc_A PLCR protein; TPR, HTH, 98.7 6.1E-07 2.1E-11 81.6 15.6 170 255-426 76-265 (293)
138 2fbn_A 70 kDa peptidylprolyl i 98.6 2.2E-07 7.6E-12 79.0 11.8 132 327-461 40-186 (198)
139 3u3w_A Transcriptional activat 98.6 2.4E-06 8E-11 77.7 19.1 208 206-426 33-265 (293)
140 1hxi_A PEX5, peroxisome target 98.6 1.3E-07 4.5E-12 73.0 8.7 96 363-461 19-114 (121)
141 1elw_A TPR1-domain of HOP; HOP 98.6 5.3E-07 1.8E-11 68.9 12.1 111 326-441 5-115 (118)
142 2e2e_A Formate-dependent nitri 98.6 1.6E-07 5.5E-12 78.2 9.8 128 296-434 21-151 (177)
143 3q49_B STIP1 homology and U bo 98.6 3.9E-07 1.3E-11 72.1 11.5 99 360-461 8-106 (137)
144 3sz7_A HSC70 cochaperone (SGT) 98.6 2.6E-07 8.8E-12 75.9 10.4 106 325-435 11-116 (164)
145 3upv_A Heat shock protein STI1 98.6 4.3E-07 1.5E-11 70.7 11.1 114 325-443 4-123 (126)
146 2lni_A Stress-induced-phosphop 98.6 5.4E-07 1.9E-11 70.6 11.8 101 358-461 13-113 (133)
147 4f3v_A ESX-1 secretion system 98.6 2E-06 6.8E-11 75.9 16.1 194 64-262 18-249 (282)
148 3gw4_A Uncharacterized protein 98.6 7.9E-07 2.7E-11 75.7 13.0 158 297-460 4-175 (203)
149 3q7a_A Farnesyltransferase alp 98.6 9.2E-05 3.1E-09 67.6 26.9 176 192-377 62-258 (349)
150 3gyz_A Chaperone protein IPGC; 98.6 3.1E-07 1.1E-11 73.8 9.6 106 322-432 32-138 (151)
151 2xcb_A PCRH, regulatory protei 98.6 3.8E-07 1.3E-11 72.7 10.0 113 322-439 14-127 (142)
152 1elw_A TPR1-domain of HOP; HOP 98.6 6.9E-07 2.4E-11 68.2 11.1 100 360-462 3-102 (118)
153 3gw4_A Uncharacterized protein 98.5 5.9E-07 2E-11 76.5 11.7 149 165-313 4-175 (203)
154 2c2l_A CHIP, carboxy terminus 98.5 7.1E-07 2.4E-11 80.5 12.7 190 218-426 3-198 (281)
155 1na0_A Designed protein CTPR3; 98.5 7.9E-07 2.7E-11 68.7 11.3 99 361-462 9-107 (125)
156 3q7a_A Farnesyltransferase alp 98.5 8.5E-06 2.9E-10 74.4 19.6 218 232-461 67-331 (349)
157 3sz7_A HSC70 cochaperone (SGT) 98.5 8E-07 2.7E-11 72.9 11.8 99 360-461 10-108 (164)
158 1a17_A Serine/threonine protei 98.5 1.7E-06 5.7E-11 70.9 13.5 130 286-426 14-145 (166)
159 3dss_A Geranylgeranyl transfer 98.5 3.2E-05 1.1E-09 70.3 22.5 232 195-442 40-319 (331)
160 4gcn_A Protein STI-1; structur 98.5 3.8E-07 1.3E-11 71.1 8.7 95 363-460 10-111 (127)
161 2dba_A Smooth muscle cell asso 98.5 1.8E-06 6.1E-11 69.1 12.5 96 361-460 28-127 (148)
162 2dba_A Smooth muscle cell asso 98.5 2E-06 6.8E-11 68.8 12.5 115 324-444 27-145 (148)
163 3q49_B STIP1 homology and U bo 98.5 1E-06 3.5E-11 69.6 10.3 116 322-442 6-126 (137)
164 2vyi_A SGTA protein; chaperone 98.5 1.4E-06 4.6E-11 68.0 10.7 99 360-461 11-109 (131)
165 4gcn_A Protein STI-1; structur 98.4 2.6E-06 8.9E-11 66.3 11.4 109 326-437 9-121 (127)
166 2xev_A YBGF; tetratricopeptide 98.4 1.7E-06 6E-11 67.4 10.5 95 367-461 8-105 (129)
167 1kt0_A FKBP51, 51 kDa FK506-bi 98.4 1.9E-06 6.5E-11 83.6 12.9 98 361-461 317-415 (457)
168 2hr2_A Hypothetical protein; a 98.4 1.2E-06 4.1E-11 69.7 9.2 64 398-461 57-131 (159)
169 3k9i_A BH0479 protein; putativ 98.4 4.3E-07 1.5E-11 69.7 6.3 88 374-461 3-90 (117)
170 1wao_1 Serine/threonine protei 98.4 7E-07 2.4E-11 87.1 9.0 121 331-456 12-134 (477)
171 1elr_A TPR2A-domain of HOP; HO 98.4 1.5E-06 5E-11 67.8 9.2 116 326-444 5-124 (131)
172 1p5q_A FKBP52, FK506-binding p 98.4 2.9E-06 9.9E-11 78.7 12.6 147 268-426 127-293 (336)
173 1wao_1 Serine/threonine protei 98.4 2.2E-06 7.6E-11 83.5 11.7 121 257-385 9-134 (477)
174 2xev_A YBGF; tetratricopeptide 98.4 8.4E-06 2.9E-10 63.4 13.0 111 329-441 6-119 (129)
175 2kck_A TPR repeat; tetratricop 98.3 2.2E-06 7.5E-11 64.6 9.2 103 325-432 6-111 (112)
176 2fbn_A 70 kDa peptidylprolyl i 98.3 6.5E-07 2.2E-11 76.1 6.6 150 20-171 3-174 (198)
177 1elr_A TPR2A-domain of HOP; HO 98.3 2E-06 6.8E-11 67.0 8.9 99 361-462 4-109 (131)
178 4b4t_Q 26S proteasome regulato 98.3 1.3E-05 4.5E-10 77.2 16.1 194 193-387 13-242 (434)
179 4b4t_Q 26S proteasome regulato 98.3 6.9E-06 2.4E-10 79.2 13.9 200 226-426 11-244 (434)
180 3ro3_A PINS homolog, G-protein 98.3 4.2E-06 1.4E-10 67.9 10.6 135 326-460 10-157 (164)
181 1ihg_A Cyclophilin 40; ppiase 98.3 5E-06 1.7E-10 78.0 12.3 140 286-454 224-363 (370)
182 3rkv_A Putative peptidylprolyl 98.3 3E-06 1E-10 69.2 9.6 64 398-461 63-126 (162)
183 1hxi_A PEX5, peroxisome target 98.3 2.7E-06 9.2E-11 65.5 8.7 100 327-432 19-119 (121)
184 3rkv_A Putative peptidylprolyl 98.3 2.5E-06 8.6E-11 69.7 8.4 114 327-443 13-143 (162)
185 2if4_A ATFKBP42; FKBP-like, al 98.3 2.1E-06 7.2E-11 79.7 8.5 149 285-461 179-328 (338)
186 3dss_A Geranylgeranyl transfer 98.3 0.00017 5.8E-09 65.5 20.6 213 236-460 47-303 (331)
187 3k9i_A BH0479 protein; putativ 98.2 1.1E-06 3.9E-11 67.3 5.1 96 337-436 2-99 (117)
188 2if4_A ATFKBP42; FKBP-like, al 98.2 6.1E-06 2.1E-10 76.5 10.4 153 254-432 179-333 (338)
189 1dce_A Protein (RAB geranylger 98.2 8.5E-05 2.9E-09 73.7 18.6 170 270-450 45-244 (567)
190 2l6j_A TPR repeat-containing p 98.2 8.5E-07 2.9E-11 67.0 3.2 95 360-457 3-103 (111)
191 3ro3_A PINS homolog, G-protein 98.1 1.9E-05 6.5E-10 63.9 11.0 139 286-428 10-159 (164)
192 3n71_A Histone lysine methyltr 98.1 1.4E-05 4.6E-10 77.5 11.3 133 334-467 318-470 (490)
193 2hr2_A Hypothetical protein; a 98.1 6.6E-06 2.2E-10 65.4 7.3 112 328-439 14-143 (159)
194 1na3_A Designed protein CTPR2; 98.1 1.8E-05 6.1E-10 57.0 8.4 83 361-446 9-91 (91)
195 2kat_A Uncharacterized protein 98.0 1.6E-05 5.4E-10 60.4 8.1 80 379-461 3-82 (115)
196 3ma5_A Tetratricopeptide repea 98.0 2.9E-05 9.9E-10 57.3 9.0 66 396-461 5-70 (100)
197 1ihg_A Cyclophilin 40; ppiase 98.0 2.9E-05 1E-09 72.7 10.1 65 397-461 272-336 (370)
198 1kt0_A FKBP51, 51 kDa FK506-bi 97.9 6.8E-05 2.3E-09 72.6 12.2 145 267-424 247-412 (457)
199 3bee_A Putative YFRE protein; 97.8 0.00013 4.4E-09 52.6 9.4 70 395-464 3-75 (93)
200 1zu2_A Mitochondrial import re 97.8 1.3E-05 4.4E-10 63.6 3.5 84 375-461 16-120 (158)
201 2l6j_A TPR repeat-containing p 97.8 0.00016 5.5E-09 54.1 9.4 67 396-462 2-68 (111)
202 1klx_A Cysteine rich protein B 97.7 0.00047 1.6E-08 54.2 11.9 112 339-463 9-128 (138)
203 1dce_A Protein (RAB geranylger 97.7 0.00097 3.3E-08 66.2 16.2 152 298-461 42-221 (567)
204 2kat_A Uncharacterized protein 97.7 0.00014 4.8E-09 55.0 8.1 83 343-430 3-85 (115)
205 3n71_A Histone lysine methyltr 97.6 0.0002 6.8E-09 69.4 10.0 133 293-426 317-463 (490)
206 1na3_A Designed protein CTPR2; 97.6 0.00033 1.1E-08 50.1 9.0 65 397-461 8-72 (91)
207 2kc7_A BFR218_protein; tetratr 97.6 6E-05 2E-09 55.3 4.8 56 406-461 8-64 (99)
208 1zu2_A Mitochondrial import re 97.6 7.2E-05 2.4E-09 59.3 4.9 113 337-462 14-148 (158)
209 3lvg_A Clathrin heavy chain 1; 97.6 6.3E-06 2.2E-10 76.4 -1.5 259 30-306 20-325 (624)
210 1klx_A Cysteine rich protein B 97.5 0.0016 5.4E-08 51.1 12.4 110 198-315 9-127 (138)
211 3qww_A SET and MYND domain-con 97.4 0.00038 1.3E-08 66.2 8.9 87 373-460 310-410 (433)
212 3qwp_A SET and MYND domain-con 97.4 0.001 3.6E-08 63.3 11.8 93 368-460 294-399 (429)
213 3ma5_A Tetratricopeptide repea 97.4 0.00024 8.1E-09 52.2 5.8 67 360-429 6-72 (100)
214 2kc7_A BFR218_protein; tetratr 97.3 0.0011 3.9E-08 48.2 8.0 81 367-458 6-87 (99)
215 3ly7_A Transcriptional activat 97.3 0.015 5.1E-07 53.1 16.5 137 283-430 192-342 (372)
216 3qww_A SET and MYND domain-con 97.1 0.003 1E-07 60.0 11.0 98 337-435 310-424 (433)
217 1wy6_A Hypothetical protein ST 97.1 0.057 1.9E-06 40.7 17.7 142 295-465 17-158 (172)
218 3qwp_A SET and MYND domain-con 97.0 0.0031 1.1E-07 60.0 10.6 105 331-436 293-414 (429)
219 3mkq_A Coatomer beta'-subunit; 96.9 0.03 1E-06 58.5 17.2 44 266-311 664-707 (814)
220 1pc2_A Mitochondria fission pr 96.8 0.0094 3.2E-07 46.7 9.4 93 339-436 12-109 (152)
221 3mkq_A Coatomer beta'-subunit; 96.8 0.19 6.5E-06 52.4 22.7 151 98-279 610-761 (814)
222 3ly7_A Transcriptional activat 96.8 0.018 6.3E-07 52.5 12.7 133 322-462 191-340 (372)
223 2v5f_A Prolyl 4-hydroxylase su 96.7 0.0072 2.4E-07 44.5 8.1 80 360-439 4-87 (104)
224 3u64_A Protein TP_0956; tetrat 96.5 0.009 3.1E-07 52.2 8.3 87 378-468 180-276 (301)
225 1nzn_A CGI-135 protein, fissio 96.4 0.098 3.3E-06 39.3 12.1 95 337-436 13-112 (126)
226 3bee_A Putative YFRE protein; 96.3 0.024 8.1E-07 40.5 8.5 68 359-430 4-75 (93)
227 3mkq_B Coatomer subunit alpha; 96.2 0.29 9.9E-06 39.3 14.7 102 264-388 15-116 (177)
228 3lvg_A Clathrin heavy chain 1; 96.2 0.0037 1.3E-07 58.4 4.2 141 19-170 52-216 (624)
229 1qsa_A Protein (soluble lytic 96.1 1.2 4.3E-05 44.1 25.5 118 299-426 228-347 (618)
230 3mkq_B Coatomer subunit alpha; 96.1 0.42 1.4E-05 38.4 16.4 128 229-388 15-142 (177)
231 3u64_A Protein TP_0956; tetrat 96.0 0.09 3.1E-06 46.0 11.7 123 373-504 133-272 (301)
232 2v5f_A Prolyl 4-hydroxylase su 95.9 0.045 1.5E-06 40.1 8.6 65 397-461 4-75 (104)
233 1pc2_A Mitochondria fission pr 95.9 0.02 6.7E-07 44.9 6.7 81 378-461 15-100 (152)
234 4h7y_A Dual specificity protei 95.8 0.055 1.9E-06 41.7 8.6 112 324-440 12-136 (161)
235 4ady_A RPN2, 26S proteasome re 95.8 1.3 4.6E-05 45.8 21.3 25 90-114 233-257 (963)
236 4gns_B Protein CSD3, chitin bi 95.7 0.089 3.1E-06 53.2 12.1 54 405-458 344-397 (754)
237 1wy6_A Hypothetical protein ST 94.9 0.88 3E-05 34.4 12.9 82 266-354 73-154 (172)
238 4h7y_A Dual specificity protei 94.3 0.27 9.3E-06 37.9 8.5 100 360-463 12-125 (161)
239 4b4t_P 26S proteasome regulato 93.5 1.4 4.9E-05 41.9 14.1 187 268-460 30-246 (445)
240 2ff4_A Probable regulatory pro 93.1 0.27 9.4E-06 45.9 8.2 68 401-468 174-246 (388)
241 3lpz_A GET4 (YOR164C homolog); 92.9 5 0.00017 36.0 18.6 25 152-176 135-159 (336)
242 4ady_A RPN2, 26S proteasome re 91.7 14 0.00048 38.4 28.3 251 162-425 383-656 (963)
243 1v54_E Cytochrome C oxidase po 91.6 1.2 4.2E-05 31.5 7.7 64 300-370 25-88 (109)
244 1nzn_A CGI-135 protein, fissio 91.4 1.4 4.8E-05 33.1 8.6 87 299-397 15-106 (126)
245 2p58_C Putative type III secre 91.2 2.8 9.6E-05 29.6 9.2 59 162-223 49-107 (116)
246 2wpv_A GET4, UPF0363 protein Y 91.2 7.7 0.00026 34.5 17.6 46 152-197 133-178 (312)
247 2uwj_G Type III export protein 91.1 2.6 8.9E-05 29.7 8.9 60 161-223 47-106 (115)
248 3ffl_A Anaphase-promoting comp 90.9 0.95 3.3E-05 35.7 7.5 56 332-387 27-89 (167)
249 1y8m_A FIS1; mitochondria, unk 90.7 4.2 0.00014 31.1 10.7 76 358-435 36-114 (144)
250 4b4t_P 26S proteasome regulato 90.7 11 0.00038 35.7 16.5 186 197-388 29-245 (445)
251 3ffl_A Anaphase-promoting comp 90.6 1.6 5.6E-05 34.4 8.7 61 290-354 25-92 (167)
252 4gns_B Protein CSD3, chitin bi 90.5 2.2 7.5E-05 43.3 11.8 123 222-351 251-397 (754)
253 3o48_A Mitochondria fission 1 90.2 2.1 7.1E-05 32.3 8.5 74 358-435 37-115 (134)
254 3ltm_A Alpha-REP4; protein eng 90.1 7.2 0.00025 32.2 18.1 20 48-67 29-48 (211)
255 2ff4_A Probable regulatory pro 89.3 3 0.0001 38.8 11.1 73 287-365 173-249 (388)
256 2y69_E Cytochrome C oxidase su 88.0 2.9 9.8E-05 31.5 7.7 64 300-370 68-131 (152)
257 1qsa_A Protein (soluble lytic 87.7 23 0.0008 35.1 37.8 379 23-453 74-471 (618)
258 3txn_A 26S proteasome regulato 87.4 18 0.00061 33.5 25.1 221 225-463 105-345 (394)
259 3ltj_A Alpharep-4; protein eng 87.4 11 0.00037 30.9 16.7 108 120-231 88-195 (201)
260 3o48_A Mitochondria fission 1 86.7 3.7 0.00013 31.0 7.9 67 395-461 37-107 (134)
261 1y8m_A FIS1; mitochondria, unk 86.7 5.4 0.00018 30.5 8.9 67 395-461 36-106 (144)
262 1v54_E Cytochrome C oxidase po 86.3 7.1 0.00024 27.7 9.4 62 376-439 25-86 (109)
263 2uwj_G Type III export protein 85.9 7.3 0.00025 27.5 9.3 88 233-330 20-107 (115)
264 3txn_A 26S proteasome regulato 85.7 22 0.00076 32.9 19.4 229 125-363 22-291 (394)
265 1zbp_A Hypothetical protein VP 85.6 10 0.00035 32.7 11.1 117 333-461 5-129 (273)
266 2p58_C Putative type III secre 85.3 7.9 0.00027 27.3 10.1 87 233-329 21-107 (116)
267 4fhn_B Nucleoporin NUP120; pro 85.0 9 0.00031 41.5 13.2 126 330-461 817-967 (1139)
268 4fhn_B Nucleoporin NUP120; pro 84.8 25 0.00086 38.1 16.6 85 220-304 900-990 (1139)
269 1wdy_A 2-5A-dependent ribonucl 84.3 15 0.00052 31.7 12.6 115 26-149 7-129 (285)
270 3esl_A Checkpoint serine/threo 83.9 15 0.00052 30.0 10.9 49 377-426 95-143 (202)
271 1zbp_A Hypothetical protein VP 82.0 4 0.00014 35.2 7.1 132 368-516 4-144 (273)
272 3lpz_A GET4 (YOR164C homolog); 81.7 29 0.00099 31.1 21.1 180 132-353 22-215 (336)
273 3kea_A K1L; tropism, ANK repea 81.2 8.3 0.00028 33.9 9.5 78 132-209 102-183 (285)
274 2y69_E Cytochrome C oxidase su 79.7 17 0.0006 27.4 9.4 59 379-439 71-129 (152)
275 3ltm_A Alpha-REP4; protein eng 79.5 24 0.00083 28.9 20.0 17 283-299 155-171 (211)
276 2wpv_A GET4, UPF0363 protein Y 78.4 36 0.0012 30.2 23.0 180 133-354 24-217 (312)
277 4b4t_R RPN7, 26S proteasome re 76.3 4 0.00014 38.6 6.1 61 327-388 133-195 (429)
278 4a1g_A Mitotic checkpoint seri 73.1 30 0.001 26.8 10.0 47 417-463 84-132 (152)
279 3esl_A Checkpoint serine/threo 72.5 38 0.0013 27.7 10.2 57 197-253 92-149 (202)
280 4b4t_R RPN7, 26S proteasome re 72.2 12 0.00041 35.3 8.3 96 257-354 134-237 (429)
281 1oyz_A Hypothetical protein YI 70.4 52 0.0018 28.4 20.8 84 150-236 139-223 (280)
282 3eiq_C Programmed cell death p 69.5 66 0.0023 29.2 13.5 60 327-388 219-280 (358)
283 2wvi_A Mitotic checkpoint seri 68.5 41 0.0014 26.4 9.8 32 431-462 95-126 (164)
284 3jxi_A Vanilloid receptor-rela 65.9 16 0.00055 31.2 7.3 117 61-177 11-161 (260)
285 1wdy_A 2-5A-dependent ribonucl 65.5 34 0.0012 29.4 9.5 116 57-181 7-130 (285)
286 3kea_A K1L; tropism, ANK repea 62.9 76 0.0026 27.5 12.0 14 165-178 104-117 (285)
287 3ygs_P Procaspase 9; apoptosis 62.8 16 0.00056 25.8 5.4 62 6-71 25-87 (97)
288 4gq2_M Nucleoporin NUP120; bet 62.7 94 0.0032 32.8 13.4 108 331-445 816-949 (950)
289 1k1a_A B-cell lymphoma 3-encod 58.9 55 0.0019 27.2 9.4 28 59-86 13-40 (241)
290 3eu9_A Huntingtin-interacting 58.5 45 0.0015 27.6 8.7 18 30-47 15-32 (240)
291 2ion_A PDCD4, programmed cell 57.7 42 0.0014 26.0 7.4 65 156-220 12-81 (152)
292 2p1h_A APAF-1, apoptotic prote 57.6 28 0.00096 24.2 5.9 61 4-69 24-84 (94)
293 2qx5_A Nucleoporin NIC96; mRNA 57.4 1.6E+02 0.0054 29.4 13.2 232 190-458 300-564 (661)
294 4a1g_A Mitotic checkpoint seri 56.0 69 0.0023 24.8 9.6 53 201-253 82-135 (152)
295 3ltj_A Alpharep-4; protein eng 56.0 78 0.0027 25.4 21.4 156 149-313 24-179 (201)
296 3aji_A 26S proteasome non-ATPa 55.5 85 0.0029 25.8 12.0 112 28-148 10-129 (231)
297 3eu9_A Huntingtin-interacting 51.7 64 0.0022 26.6 8.6 42 6-48 23-66 (240)
298 2d2s_A Exocyst complex compone 51.3 44 0.0015 28.2 7.1 89 57-148 23-117 (235)
299 1k1a_A B-cell lymphoma 3-encod 50.9 1E+02 0.0036 25.4 11.3 79 27-110 12-99 (241)
300 3hra_A Ankyrin repeat family p 50.7 64 0.0022 25.8 8.2 15 32-46 13-27 (201)
301 3ljn_A Hypothetical protein; a 49.4 48 0.0016 30.0 7.8 89 26-119 22-113 (364)
302 2r9g_A AAA ATPase, central reg 49.2 1.1E+02 0.0036 25.0 9.2 63 187-250 14-84 (204)
303 4aez_C MAD3, mitotic spindle c 48.4 1.2E+02 0.004 25.3 8.9 50 416-465 132-183 (223)
304 3bge_A Predicted ATPase; struc 48.3 1.1E+02 0.0037 24.9 8.4 48 187-234 7-57 (201)
305 2wvi_A Mitotic checkpoint seri 47.5 1E+02 0.0034 24.2 10.2 54 201-254 77-131 (164)
306 2nsz_A Programmed cell death p 46.7 88 0.003 23.3 9.6 65 156-220 10-79 (129)
307 2pnn_A Transient receptor pote 44.9 88 0.003 26.7 8.5 52 62-113 20-80 (273)
308 3b7b_A Euchromatic histone-lys 44.6 1E+02 0.0036 25.3 8.8 207 27-247 14-235 (237)
309 3qil_A Clathrin heavy chain 1; 43.4 5.9 0.0002 29.1 0.4 72 30-109 15-86 (125)
310 3ctd_A Putative ATPase, AAA fa 42.8 1.4E+02 0.0048 24.5 8.9 68 183-250 31-106 (213)
311 4aez_C MAD3, mitotic spindle c 42.0 1.5E+02 0.0051 24.7 8.7 53 201-253 131-184 (223)
312 3crd_A Raidd; caspase recruitm 42.0 64 0.0022 22.7 5.8 68 7-82 26-93 (100)
313 4b4t_S RPN3, 26S proteasome re 41.8 78 0.0027 30.4 7.8 62 325-390 231-299 (523)
314 4b4t_S RPN3, 26S proteasome re 40.9 2.2E+02 0.0076 27.3 10.7 65 184-248 231-299 (523)
315 3d9h_A CDNA FLJ77766, highly s 39.4 1.5E+02 0.0052 25.5 9.2 147 23-178 14-179 (285)
316 1n11_A Ankyrin; clathrin, BAND 39.1 1.1E+02 0.0039 28.3 8.9 144 27-179 17-169 (437)
317 3mv2_A Coatomer subunit alpha; 38.9 2.1E+02 0.0071 25.4 12.5 54 394-461 201-256 (325)
318 2d2s_A Exocyst complex compone 38.9 54 0.0019 27.7 5.7 29 431-459 90-118 (235)
319 3ygs_P Procaspase 9; apoptosis 38.1 88 0.003 21.9 5.9 35 137-171 52-86 (97)
320 2nsz_A Programmed cell death p 37.6 1.3E+02 0.0043 22.5 7.9 59 257-315 10-73 (129)
321 1ya0_A SMG-7 transcript varian 35.8 1.2E+02 0.004 29.2 8.1 48 408-455 162-209 (497)
322 2etb_A Transient receptor pote 35.8 1.8E+02 0.0063 24.2 9.0 56 59-115 6-71 (256)
323 2ion_A PDCD4, programmed cell 35.7 1.1E+02 0.0039 23.6 6.7 60 256-315 11-75 (152)
324 2fu4_A Ferric uptake regulatio 35.3 97 0.0033 20.5 6.2 61 76-137 6-67 (83)
325 1mzb_A Ferric uptake regulatio 35.3 1.1E+02 0.0038 22.9 6.6 60 77-137 8-68 (136)
326 2xig_A Ferric uptake regulatio 35.2 1.2E+02 0.0041 23.3 6.8 61 76-137 16-76 (150)
327 2w57_A Ferric uptake regulatio 33.5 1.2E+02 0.0041 23.3 6.6 62 76-138 6-68 (150)
328 1bpo_A Protein (clathrin); cla 33.4 2.6E+02 0.0088 26.4 9.5 138 8-155 349-489 (494)
329 4gq2_M Nucleoporin NUP120; bet 32.1 4.7E+02 0.016 27.5 13.5 48 221-268 899-950 (950)
330 3aji_A 26S proteasome non-ATPa 31.5 2.1E+02 0.0072 23.2 9.2 115 58-178 9-128 (231)
331 2rfa_A Transient receptor pote 31.4 1.5E+02 0.0051 24.2 7.6 161 7-178 18-219 (232)
332 3twr_A Tankyrase-2; ankyrin re 31.3 1.7E+02 0.0059 22.2 9.2 111 28-147 12-130 (165)
333 1bd8_A P19INK4D CDK4/6 inhibit 31.3 1.6E+02 0.0056 22.0 8.3 110 28-147 6-123 (156)
334 4g8k_A 2-5A-dependent ribonucl 30.6 2.8E+02 0.0095 24.4 10.3 282 25-324 26-328 (337)
335 2fe3_A Peroxide operon regulat 30.2 1E+02 0.0035 23.5 5.6 60 77-137 12-71 (145)
336 1oyz_A Hypothetical protein YI 29.5 2.6E+02 0.0089 23.7 22.1 17 360-376 205-221 (280)
337 3qye_A TBC1 domain family memb 29.3 2.8E+02 0.0095 24.6 9.3 129 67-199 164-309 (331)
338 2zu6_B Programmed cell death p 28.0 2E+02 0.0067 25.4 7.7 66 156-221 169-239 (307)
339 3eyy_A Putative iron uptake re 28.0 1.1E+02 0.0036 23.4 5.4 59 76-136 8-66 (145)
340 2zu6_B Programmed cell death p 27.8 3.1E+02 0.011 24.1 15.9 27 157-183 7-33 (307)
341 3jxi_A Vanilloid receptor-rela 27.5 35 0.0012 29.0 2.8 87 94-181 9-118 (260)
342 2fe3_A Peroxide operon regulat 27.2 1.8E+02 0.006 22.1 6.5 36 233-268 35-70 (145)
343 1ug3_A EIF4GI, eukaryotic prot 26.7 3.5E+02 0.012 24.2 10.4 26 157-182 15-40 (339)
344 2b7e_A PRE-mRNA processing pro 26.6 63 0.0022 20.2 3.0 30 68-97 2-31 (59)
345 2o03_A Probable zinc uptake re 26.5 1E+02 0.0036 22.9 5.0 44 58-101 16-59 (131)
346 3ljn_A Hypothetical protein; a 26.2 2.7E+02 0.0092 24.8 8.9 137 6-148 34-196 (364)
347 1oai_A Nuclear RNA export fact 26.1 42 0.0015 21.0 2.2 23 65-87 33-56 (59)
348 3utm_A Tankyrase-1; tankyrase, 25.5 3.4E+02 0.012 23.7 15.8 116 26-150 26-149 (351)
349 2p1h_A APAF-1, apoptotic prote 24.7 1.7E+02 0.0059 20.0 7.0 38 135-172 49-86 (94)
350 1ug3_A EIF4GI, eukaryotic prot 24.2 3.8E+02 0.013 23.9 9.7 65 187-252 14-79 (339)
351 4ets_A Ferric uptake regulatio 24.2 1.8E+02 0.0063 22.6 6.2 68 69-137 14-84 (162)
352 3mwm_A ZUR, putative metal upt 23.7 93 0.0032 23.5 4.3 16 66-81 27-42 (139)
353 3mkr_B Coatomer subunit alpha; 23.5 3.9E+02 0.013 23.7 8.9 37 394-430 192-230 (320)
354 1wgl_A TOLL-interacting protei 23.5 52 0.0018 20.6 2.2 24 443-466 34-57 (59)
355 4ets_A Ferric uptake regulatio 23.3 1.1E+02 0.0039 23.8 4.8 53 52-104 32-86 (162)
356 2rfa_A Transient receptor pote 22.4 2.3E+02 0.0078 23.1 7.1 23 193-215 160-182 (232)
357 2xig_A Ferric uptake regulatio 22.2 2.6E+02 0.009 21.3 6.9 58 210-268 18-75 (150)
358 3eyy_A Putative iron uptake re 21.4 1.7E+02 0.0057 22.3 5.4 45 56-101 22-66 (145)
359 2keb_A DNA polymerase subunit 21.3 2.2E+02 0.0075 20.0 5.5 57 70-128 27-88 (101)
360 2ijq_A Hypothetical protein; s 21.3 3E+02 0.01 21.5 8.4 54 373-426 44-103 (161)
361 3b7b_A Euchromatic histone-lys 20.9 3.4E+02 0.012 22.0 10.0 204 59-280 15-233 (237)
362 2crb_A Nuclear receptor bindin 20.9 1.3E+02 0.0044 20.9 3.8 23 434-456 17-39 (97)
363 3bqo_A Telomeric repeat-bindin 20.8 3.4E+02 0.012 22.0 12.9 73 377-452 94-171 (211)
364 3hra_A Ankyrin repeat family p 20.8 3.1E+02 0.01 21.5 7.6 49 26-75 41-92 (201)
365 3t8k_A Uncharacterized protein 20.7 2.9E+02 0.01 21.7 7.1 91 31-122 13-109 (186)
366 4b4t_O 26S proteasome regulato 20.3 5E+02 0.017 23.7 9.3 58 331-388 82-154 (393)
367 2o03_A Probable zinc uptake re 20.3 1.6E+02 0.0056 21.8 5.0 46 92-137 15-60 (131)
368 2ko4_A Mediator of RNA polymer 20.3 1.9E+02 0.0065 19.3 4.4 39 40-78 22-62 (81)
369 1mzb_A Ferric uptake regulatio 20.3 1.4E+02 0.0047 22.4 4.6 45 57-101 22-67 (136)
No 1
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=3.7e-40 Score=335.95 Aligned_cols=431 Identities=8% Similarity=-0.045 Sum_probs=359.6
Q ss_pred CChhHHHHHHHHhhccCCchhHHHHhccCC--CCCcccHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCcccHHHHHHH
Q 038200 19 NNSFWTINLLKHSADFGSPDYTVLVFKCIN--NPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGS 96 (523)
Q Consensus 19 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~ 96 (523)
+++..++.++..|.+.|++++|+.+|+++. .|+..+|..++.+|.+.|++++|+.+|+.+... +++..+++.++.+
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~ 159 (597)
T 2xpi_A 82 SREDYLRLWRHDALMQQQYKCAAFVGEKVLDITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLY--NRSSACRYLAAFC 159 (597)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG--GTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCchHHHHHHHHHHhhCCCchHHHHHHHHHHHcCcHHHHHHHHHHHhcc--ccchhHHHHHHHH
Confidence 467788899999999999999999998875 467788888999999999999999999888653 6788889999999
Q ss_pred HHccCCchHHHHHHHHHHHh---------------CCCCCchHHHHHHHHHHccCChHHHHHHHhhcCC--C-CcchHHH
Q 038200 97 CAKTGCVERGGMCHGLALKN---------------GVDFELPVMNSLINMYGCFGAMDCARNMFVQMSP--R-DLISWNS 158 (523)
Q Consensus 97 ~~~~~~~~~a~~~~~~~~~~---------------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~ 158 (523)
+.+.|++++|..+|+++... +.+++..+|+.++.+|.+.|++++|.++|+++.. | +...+..
T Consensus 160 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 239 (597)
T 2xpi_A 160 LVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQ 239 (597)
T ss_dssp HHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhhHHHHH
Confidence 99999999999988853211 1123467899999999999999999999998863 2 2223222
Q ss_pred H--------------------------------------HHHHHhcCCHHHHHHHHhcCCC--CChhHHHHHHHHHHhcC
Q 038200 159 I--------------------------------------VSGHVRSGDMSAAHELFDIMPE--RNVVSWNIMISGYSKSG 198 (523)
Q Consensus 159 l--------------------------------------l~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~li~~~~~~~ 198 (523)
+ +..|.+.|++++|.++|+++.+ ++..+|+.++.+|.+.|
T Consensus 240 l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g 319 (597)
T 2xpi_A 240 LVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRS 319 (597)
T ss_dssp HHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHHTT
T ss_pred HHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhc
Confidence 2 4445678889999999999887 78889999999999999
Q ss_pred CchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHcCCCCchHHHHHHhhhhhhcCChHHHHHHHH
Q 038200 199 NPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFD 278 (523)
Q Consensus 199 ~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 278 (523)
++++|.++|+++.+.+ +.+..++..++.++.+.|++++|..+++.+.+.. +.+..+++.++.+|.+.|++++|.++|+
T Consensus 320 ~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 397 (597)
T 2xpi_A 320 RFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRYFS 397 (597)
T ss_dssp CHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 9999999999998765 4477788999999999999999999999998764 4578888999999999999999999999
Q ss_pred hcCC---CChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhHhc
Q 038200 279 SMAD---RNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFY 355 (523)
Q Consensus 279 ~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 355 (523)
++.+ .+..+|+.++.+|.+.|++++|+++|+++.... +.+..++..++.+|.+.|++++|.++|+++.+.
T Consensus 398 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~- 470 (597)
T 2xpi_A 398 KSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF------QGTHLPYLFLGMQHMQLGNILLANEYLQSSYAL- 470 (597)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT------TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-
T ss_pred HHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-
Confidence 8743 467789999999999999999999999998864 457788999999999999999999999999874
Q ss_pred CCCCChHHHHHHHHHHHcCCChHHHHHHHHhCCCCC--CCCCch--HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCC
Q 038200 356 KIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDN--DNMSFE--SIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQD 431 (523)
Q Consensus 356 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~ 431 (523)
.+.++.+|..++.+|.+.|++++|.++|+++.+.. .+..|+ ..+|..++.+|...|++++|...++++.+.+|++
T Consensus 471 -~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 549 (597)
T 2xpi_A 471 -FQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTND 549 (597)
T ss_dssp -CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCC
T ss_pred -CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC
Confidence 44578889999999999999999999999886421 024666 7889999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 038200 432 FSRYQFLLNVYAVAGQWEDVARVRELMKKR 461 (523)
Q Consensus 432 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 461 (523)
+.+|..++.+|.+.|++++|.+.++++.+.
T Consensus 550 ~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 579 (597)
T 2xpi_A 550 ANVHTAIALVYLHKKIPGLAITHLHESLAI 579 (597)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence 999999999999999999999999998775
No 2
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1e-38 Score=325.34 Aligned_cols=428 Identities=8% Similarity=-0.011 Sum_probs=374.8
Q ss_pred chHhHHHHHHHHhCCCCCChhHHHHHHHHhhccCCchhHHHHhccC--CCCCcccHHHHHHHHHhCCCchHHHHHHHHHH
Q 038200 2 KQLLQIQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCI--NNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMI 79 (523)
Q Consensus 2 ~~~~~i~~~~~~~g~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~ 79 (523)
+.|..++..+... . |+...+..++.+|.+.|++++|+.+|+.+ .+++..+|+.++..|.+.|++++|+++|+++.
T Consensus 101 ~~A~~~~~~~~~~--~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 177 (597)
T 2xpi_A 101 KCAAFVGEKVLDI--T-GNPNDAFWLAQVYCCTGDYARAKCLLTKEDLYNRSSACRYLAAFCLVKLYDWQGALNLLGETN 177 (597)
T ss_dssp HHHHHHHHHHHHH--H-CCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGGGTCHHHHHHHHHHHHHTTCHHHHHHHHCSSC
T ss_pred hHHHHHHHHHHhh--C-CCchHHHHHHHHHHHcCcHHHHHHHHHHHhccccchhHHHHHHHHHHHHhhHHHHHHHHhccC
Confidence 3567778888754 4 67788899999999999999999999998 46889999999999999999999999999532
Q ss_pred HC---------------CCCCCcccHHHHHHHHHccCCchHHHHHHHHHHHhCCCCCchHHHHH----------------
Q 038200 80 KN---------------GFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSL---------------- 128 (523)
Q Consensus 80 ~~---------------~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l---------------- 128 (523)
.. +.+++..+|+.++.++.+.|++++|.++|+++.+.++. +...+..+
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~~~~~~~~ 256 (597)
T 2xpi_A 178 PFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAK-CYEAFDQLVSNHLLTADEEWDLVL 256 (597)
T ss_dssp TTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHTTCSCHHHHHHHHH
T ss_pred CccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCch-hhHHHHHHHHhhcccchhHHHHHH
Confidence 21 22345789999999999999999999999999987643 34443333
Q ss_pred ----------------------HHHHHccCChHHHHHHHhhcCC--CCcchHHHHHHHHHhcCCHHHHHHHHhcCCC---
Q 038200 129 ----------------------INMYGCFGAMDCARNMFVQMSP--RDLISWNSIVSGHVRSGDMSAAHELFDIMPE--- 181 (523)
Q Consensus 129 ----------------------~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~--- 181 (523)
+..|.+.|++++|.++|+++.. ++..+|+.++.+|.+.|++++|.++|+++.+
T Consensus 257 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 336 (597)
T 2xpi_A 257 KLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDP 336 (597)
T ss_dssp HSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred hcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCc
Confidence 5566788999999999999986 7999999999999999999999999999864
Q ss_pred CChhHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHcCCCCchHHHHHHh
Q 038200 182 RNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALI 261 (523)
Q Consensus 182 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 261 (523)
.+..+|+.++.++.+.|++++|..+++++.+.. +.+..++..++.+|.+.|++++|.++|+++.+.. +.+..+|+.++
T Consensus 337 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 414 (597)
T 2xpi_A 337 YNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMD-PQFGPAWIGFA 414 (597)
T ss_dssp TCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 467889999999999999999999999998753 5578899999999999999999999999999864 34688999999
Q ss_pred hhhhhcCChHHHHHHHHhcCC---CChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcCCCHHHHHHHHHHHhhc
Q 038200 262 DLYSKCQKVEVAQRVFDSMAD---RNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRA 338 (523)
Q Consensus 262 ~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~ll~~~~~~ 338 (523)
.+|.+.|++++|+++|+++.+ .+..+|+.++.+|.+.|++++|.++|+++.+.. +.+..+|..++..|.+.
T Consensus 415 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~------~~~~~~~~~l~~~~~~~ 488 (597)
T 2xpi_A 415 HSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF------QYDPLLLNELGVVAFNK 488 (597)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC------CCCHHHHHHHHHHHHHT
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------CCChHHHHHHHHHHHHh
Confidence 999999999999999998743 477899999999999999999999999999864 44688999999999999
Q ss_pred CcHHHHHHHHHHhhHhc---CCCCC--hHHHHHHHHHHHcCCChHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHhcCC
Q 038200 339 ELLTEGRKYFRQMIDFY---KIKPN--FAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGA 413 (523)
Q Consensus 339 ~~~~~a~~~~~~~~~~~---~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 413 (523)
|++++|.++|+++.+.. +..|+ ..+|..++.+|.+.|++++|.++++++.+. .+.+..+|..+..+|...|+
T Consensus 489 g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~p~~~~~~~~l~~~~~~~g~ 565 (597)
T 2xpi_A 489 SDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLL---STNDANVHTAIALVYLHKKI 565 (597)
T ss_dssp TCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---SSCCHHHHHHHHHHHHHTTC
T ss_pred CCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHHhCC
Confidence 99999999999998742 45677 789999999999999999999999999854 24478899999999999999
Q ss_pred HHHHHHHHHHHhhcCCCChhhHHHHHHHHHh
Q 038200 414 VAMVERLAKSFVDMDPQDFSRYQFLLNVYAV 444 (523)
Q Consensus 414 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 444 (523)
+++|.+.++++.+++|+++.++..++.+|..
T Consensus 566 ~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~ 596 (597)
T 2xpi_A 566 PGLAITHLHESLAISPNEIMASDLLKRALEE 596 (597)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHHhcCCCChHHHHHHHHHHhc
Confidence 9999999999999999999999999887753
No 3
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=100.00 E-value=2.5e-29 Score=241.63 Aligned_cols=374 Identities=11% Similarity=0.044 Sum_probs=295.1
Q ss_pred HHHHHhCCCchHHHHHHHHHHHCCCCCCcccHHHHHHHHHccCCchHHHHHHHHHHHhCCCCCchHHHHHHHHHHccCCh
Q 038200 59 IKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAM 138 (523)
Q Consensus 59 l~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 138 (523)
...+.+.|++++|++.++.+.+.. +.+...+..+...+...|++++|...++...+.. +.+..+|..+..+|.+.|++
T Consensus 6 a~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~~ 83 (388)
T 1w3b_A 6 AHREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQL 83 (388)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCH
Confidence 344556677777777776666542 2233445555555566677777777777666654 23566677777777777777
Q ss_pred HHHHHHHhhcC---CCCcchHHHHHHHHHhcCCHHHHHHHHhcCCC--C-ChhHHHHHHHHHHhcCCchHHHHHHHHHHH
Q 038200 139 DCARNMFVQMS---PRDLISWNSIVSGHVRSGDMSAAHELFDIMPE--R-NVVSWNIMISGYSKSGNPGCSLKLFREMMK 212 (523)
Q Consensus 139 ~~A~~~~~~~~---~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 212 (523)
++|.+.|+++. +.+..+|..+..++.+.|++++|...|+++.+ | +...+..+...+...|++++|.++|+++.+
T Consensus 84 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 163 (388)
T 1w3b_A 84 QEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIE 163 (388)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 77777777664 23445667777777777777777777776653 3 345677788888889999999999999888
Q ss_pred CCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHcCCCCchHHHHHHhhhhhhcCChHHHHHHHHhcCC---CChHHHH
Q 038200 213 SGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMAD---RNLVCWN 289 (523)
Q Consensus 213 ~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~ 289 (523)
.. +.+..++..+..++...|++++|...|+++.+.+ +.+...+..+...+...|++++|...|++..+ .+..++.
T Consensus 164 ~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 241 (388)
T 1w3b_A 164 TQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHG 241 (388)
T ss_dssp HC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHH
T ss_pred hC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHH
Confidence 53 3456788889999999999999999999998875 33577888899999999999999999987643 4578899
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhHhcCCCCChHHHHHHHH
Q 038200 290 AMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMAN 369 (523)
Q Consensus 290 ~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 369 (523)
.+...|...|++++|...|+++.+.. +.+..++..+...+.+.|++++|...|+++.+. .+.+..++..+..
T Consensus 242 ~l~~~~~~~g~~~~A~~~~~~al~~~------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~ 313 (388)
T 1w3b_A 242 NLACVYYEQGLIDLAIDTYRRAIELQ------PHFPDAYCNLANALKEKGSVAEAEDCYNTALRL--CPTHADSLNNLAN 313 (388)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTC------SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhC------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CcccHHHHHHHHH
Confidence 99999999999999999999999854 334678999999999999999999999999984 5667889999999
Q ss_pred HHHcCCChHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhhHHHHHHHHHhcCC
Q 038200 370 LYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQ 447 (523)
Q Consensus 370 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 447 (523)
.+.+.|++++|.+.++++.+. .+.+..++..+...+...|++++|...++++.+.+|+++.+|..++.++...|+
T Consensus 314 ~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 314 IKREQGNIEEAVRLYRKALEV---FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HHHTTTCHHHHHHHHHHHTTS---CTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred HHHHcCCHHHHHHHHHHHHhc---CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHhHHHHHHHccC
Confidence 999999999999999999864 344577888999999999999999999999999999999999999999887764
No 4
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.97 E-value=5.6e-28 Score=232.20 Aligned_cols=354 Identities=12% Similarity=0.051 Sum_probs=312.8
Q ss_pred HHHHHHccCCchHHHHHHHHHHHhCCCCCchHHHHHHHHHHccCChHHHHHHHhhcC---CCCcchHHHHHHHHHhcCCH
Q 038200 93 LFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMS---PRDLISWNSIVSGHVRSGDM 169 (523)
Q Consensus 93 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~ll~~~~~~~~~ 169 (523)
+...+.+.|++++|.+.++.+.+..+. +...+..+...+...|++++|...++... +.+..+|..+...|.+.|++
T Consensus 5 ~a~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~ 83 (388)
T 1w3b_A 5 LAHREYQAGDFEAAERHCMQLWRQEPD-NTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQL 83 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCH
Confidence 345667889999999999999988543 66778888889999999999999998875 45778999999999999999
Q ss_pred HHHHHHHhcCCC--C-ChhHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHH
Q 038200 170 SAAHELFDIMPE--R-NVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTV 246 (523)
Q Consensus 170 ~~a~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 246 (523)
++|+..|+++.+ | +..+|..+..++.+.|++++|...|+++.+.. +.+...+..+...+...|++++|...|+++.
T Consensus 84 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 162 (388)
T 1w3b_A 84 QEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLKAI 162 (388)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 999999999864 4 45679999999999999999999999999864 3345677788889999999999999999999
Q ss_pred HcCCCCchHHHHHHhhhhhhcCChHHHHHHHHhcCC---CChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcCC
Q 038200 247 RTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMAD---RNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISP 323 (523)
Q Consensus 247 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~p 323 (523)
+.. +.+..++..+...+...|++++|...|+++.+ .+...|..+...+...|++++|...|++.... .|
T Consensus 163 ~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~-------~p 234 (388)
T 1w3b_A 163 ETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSL-------SP 234 (388)
T ss_dssp HHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHH-------CT
T ss_pred HhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-------Cc
Confidence 875 33678899999999999999999999999854 35678999999999999999999999999984 45
Q ss_pred -CHHHHHHHHHHHhhcCcHHHHHHHHHHhhHhcCCCCChHHHHHHHHHHHcCCChHHHHHHHHhCCCCCCCCCchHHHHH
Q 038200 324 -DEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWV 402 (523)
Q Consensus 324 -~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 402 (523)
+..++..+..++...|++++|...|+++.+. .+.++.+|..+..++.+.|++++|.+.++++.+. .+.+..++.
T Consensus 235 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~ 309 (388)
T 1w3b_A 235 NHAVVHGNLACVYYEQGLIDLAIDTYRRAIEL--QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRL---CPTHADSLN 309 (388)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH---CTTCHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh---CcccHHHHH
Confidence 4778999999999999999999999999983 4446788999999999999999999999999864 355678899
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 038200 403 SLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKR 461 (523)
Q Consensus 403 ~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 461 (523)
.+...+...|++++|...++++.+..|+++.++..++.+|.+.|++++|...++++.+.
T Consensus 310 ~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 368 (388)
T 1w3b_A 310 NLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI 368 (388)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999764
No 5
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.96 E-value=3.7e-28 Score=237.35 Aligned_cols=184 Identities=14% Similarity=0.223 Sum_probs=174.3
Q ss_pred hHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcccc---------HHHHHHHHHHHHHcCCCCchH
Q 038200 185 VSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSAR---------FNEGRSVHGYTVRTSLKPNII 255 (523)
Q Consensus 185 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~---------~~~a~~~~~~~~~~~~~~~~~ 255 (523)
..++.+|.+|++.|++++|+++|++|.+.|+.||..||+.+|.+|++.+. ++.|.++|++|.+.|+.||..
T Consensus 27 ~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~ 106 (501)
T 4g26_A 27 ALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEA 106 (501)
T ss_dssp HHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHH
Confidence 45888999999999999999999999999999999999999999987554 788999999999999999999
Q ss_pred HHHHHhhhhhhcCChHHHHHHHHhcC----CCChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcCCCHHHHHHH
Q 038200 256 LDTALIDLYSKCQKVEVAQRVFDSMA----DRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGV 331 (523)
Q Consensus 256 ~~~~l~~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~l 331 (523)
+|++||.+|++.|++++|.++|++|. .||..+|+++|.+|++.|++++|.++|++|.+.| +.||..||++|
T Consensus 107 tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G-----~~Pd~~ty~~L 181 (501)
T 4g26_A 107 TFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESE-----VVPEEPELAAL 181 (501)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-----CCCCHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcC-----CCCCHHHHHHH
Confidence 99999999999999999999999995 4899999999999999999999999999999999 99999999999
Q ss_pred HHHHhhcCcHHHHHHHHHHhhHhcCCCCChHHHHHHHHHHHcC
Q 038200 332 ICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGA 374 (523)
Q Consensus 332 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 374 (523)
|.+|++.|+.++|.++|++|.+. +..|+..||+.++..|+..
T Consensus 182 i~~~~~~g~~d~A~~ll~~Mr~~-g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 182 LKVSMDTKNADKVYKTLQRLRDL-VRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH-TSSBCHHHHHHHHHHHHSH
T ss_pred HHHHhhCCCHHHHHHHHHHHHHh-CCCcCHHHHHHHHHHHhcC
Confidence 99999999999999999999997 9999999999999998753
No 6
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.95 E-value=1.8e-27 Score=232.46 Aligned_cols=203 Identities=10% Similarity=0.097 Sum_probs=174.5
Q ss_pred hHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhccccHHHHHHHHHHHHHcCCCCchHHHHHHhhhhhhcCC---------h
Q 038200 201 GCSLKLFREMMKSGFRGND-KTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQK---------V 270 (523)
Q Consensus 201 ~~a~~~~~~m~~~~~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---------~ 270 (523)
..+..+.+++.+.++.+.+ ..++.+|.+|++.|++++|.++|++|.+.|+.||..+|++||.+|++.+. +
T Consensus 7 s~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l 86 (501)
T 4g26_A 7 SPSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGL 86 (501)
T ss_dssp -----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHH
T ss_pred chHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchH
Confidence 3445566777777765543 46888999999999999999999999999999999999999999987765 6
Q ss_pred HHHHHHHHhcC----CCChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcCCCHHHHHHHHHHHhhcCcHHHHHH
Q 038200 271 EVAQRVFDSMA----DRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRK 346 (523)
Q Consensus 271 ~~a~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~ 346 (523)
+.|.++|++|. .||..+|+++|.+|++.|++++|.++|++|.+.| +.||..||+.+|.+|++.|++++|.+
T Consensus 87 ~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g-----~~Pd~~tyn~lI~~~~~~g~~~~A~~ 161 (501)
T 4g26_A 87 SRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFG-----IQPRLRSYGPALFGFCRKGDADKAYE 161 (501)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-----CCCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-----CCCccceehHHHHHHHHCCCHHHHHH
Confidence 88999999995 4899999999999999999999999999999999 99999999999999999999999999
Q ss_pred HHHHhhHhcCCCCChHHHHHHHHHHHcCCChHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHhc
Q 038200 347 YFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQ 411 (523)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 411 (523)
+|++|.+. |+.||..+|+.|+.+|++.|++++|.+++++|. ..+..|+..||+.++..|...
T Consensus 162 l~~~M~~~-G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr--~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 162 VDAHMVES-EVVPEEPELAALLKVSMDTKNADKVYKTLQRLR--DLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HHHHHHHT-TCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH--HHTSSBCHHHHHHHHHHHHSH
T ss_pred HHHHHHhc-CCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHH--HhCCCcCHHHHHHHHHHHhcC
Confidence 99999997 999999999999999999999999999999999 456899999999999887653
No 7
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.95 E-value=1.3e-25 Score=224.12 Aligned_cols=428 Identities=8% Similarity=-0.054 Sum_probs=299.7
Q ss_pred hHHHHHHHHhhccCCchhHHHHhccCC--CCCcccHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCcccHHHHHHHHHc
Q 038200 22 FWTINLLKHSADFGSPDYTVLVFKCIN--NPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAK 99 (523)
Q Consensus 22 ~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 99 (523)
..+..+...+.+.|++++|+..|+++. .|+...|..+..++.+.|++++|+..|+++.+.+ +.+..++..+..++..
T Consensus 7 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~ 85 (514)
T 2gw1_A 7 LALKDKGNQFFRNKKYDDAIKYYNWALELKEDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASANEG 85 (514)
T ss_dssp HHHHHHHHHHHHTSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhcCccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHH
Confidence 345555566666677777777766654 3566666666667777777777777777666643 3344566666666667
Q ss_pred cCCchHHHHHHHHHHHhCCCCCchHHHHHHHHHHccCChHHHHHHHhhcCC----CCcchHHHH---HHHHHhcCCHHHH
Q 038200 100 TGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSP----RDLISWNSI---VSGHVRSGDMSAA 172 (523)
Q Consensus 100 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~l---l~~~~~~~~~~~a 172 (523)
.|++++|...|+.+.+.++ ++......++..+........+.+.+..+.. ++...+... ............+
T Consensus 86 ~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (514)
T 2gw1_A 86 LGKFADAMFDLSVLSLNGD-FNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSM 164 (514)
T ss_dssp TTCHHHHHHHHHHHHHSSS-CCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHH
T ss_pred HhhHHHHHHHHHHHHhcCC-CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHH
Confidence 7777777777776666553 2444444444444433333333333322110 000000000 0000111111122
Q ss_pred HHHHhcCCC---------C-ChhHHHHHHHHHHh---cCCchHHHHHHHHHHH-----CCCC--------CCHHHHHHHH
Q 038200 173 HELFDIMPE---------R-NVVSWNIMISGYSK---SGNPGCSLKLFREMMK-----SGFR--------GNDKTMASVL 226 (523)
Q Consensus 173 ~~~~~~~~~---------~-~~~~~~~li~~~~~---~~~~~~a~~~~~~m~~-----~~~~--------p~~~~~~~ll 226 (523)
...+..... | +...+......+.. .|++++|..+|+++.+ .... .+..++..+.
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (514)
T 2gw1_A 165 ASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTG 244 (514)
T ss_dssp HHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHH
T ss_pred HHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHH
Confidence 222222211 1 24455555555554 8999999999999988 3112 2345778888
Q ss_pred HHHhccccHHHHHHHHHHHHHcCCCCchHHHHHHhhhhhhcCChHHHHHHHHhcCC---CChHHHHHHHHHHHhcCChHH
Q 038200 227 TACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMAD---RNLVCWNAMILGHCIHGKPEE 303 (523)
Q Consensus 227 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~ 303 (523)
.++...|++++|...++.+.+.... ..++..+..+|...|++++|...++++.+ .+...+..+...|...|++++
T Consensus 245 ~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 322 (514)
T 2gw1_A 245 IFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQ 322 (514)
T ss_dssp HHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTTH
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHHH
Confidence 8999999999999999999987644 88888999999999999999999998754 366789999999999999999
Q ss_pred HHHHHHHHHhCCCCCCCcCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhHhcCCCCChHHHHHHHHHHHcCCChHHHHHH
Q 038200 304 GIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEI 383 (523)
Q Consensus 304 a~~~~~~m~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 383 (523)
|...|+++.... +.+...+..+...+...|++++|...++++.+. .+.+...+..+...|...|++++|.+.
T Consensus 323 A~~~~~~~~~~~------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~ 394 (514)
T 2gw1_A 323 AGKDFDKAKELD------PENIFPYIQLACLAYRENKFDDCETLFSEAKRK--FPEAPEVPNFFAEILTDKNDFDKALKQ 394 (514)
T ss_dssp HHHHHHHHHHTC------SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHH--STTCSHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHhC------hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--cccCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 999999999864 335678888999999999999999999999884 344678889999999999999999999
Q ss_pred HHhCCCCCCCCCch----HHHHHHHHHHHHh---cCCHHHHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChhHHHHHHH
Q 038200 384 LRKMPEDNDNMSFE----SIMWVSLLSLCRF---QGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRE 456 (523)
Q Consensus 384 ~~~~~~~~~~~~~~----~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 456 (523)
++++.+.... .++ ...+..+...+.. .|++++|...++++.+..|+++.++..++.+|.+.|++++|...++
T Consensus 395 ~~~a~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 473 (514)
T 2gw1_A 395 YDLAIELENK-LDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFE 473 (514)
T ss_dssp HHHHHHHHHT-SSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHhhhc-cchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 9988742111 111 3377888888999 9999999999999999999999999999999999999999999999
Q ss_pred HHHhCC
Q 038200 457 LMKKRR 462 (523)
Q Consensus 457 ~m~~~~ 462 (523)
+..+..
T Consensus 474 ~a~~~~ 479 (514)
T 2gw1_A 474 ESADLA 479 (514)
T ss_dssp HHHHHC
T ss_pred HHHHhc
Confidence 997754
No 8
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.94 E-value=4.9e-25 Score=219.95 Aligned_cols=421 Identities=10% Similarity=-0.054 Sum_probs=315.2
Q ss_pred chHhHHHHHHHHhCCCCCChhHHHHHHHHhhccCCchhHHHHhccCC---CCCcccHHHHHHHHHhCCCchHHHHHHHHH
Q 038200 2 KQLLQIQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCIN---NPGTFCVNAVIKAYSNSCVPDQGVVFYLQM 78 (523)
Q Consensus 2 ~~~~~i~~~~~~~g~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m 78 (523)
+.|...+..+++.. |++.++..+..++.+.|++++|++.|+.+. +.+..+|..+..++.+.|++++|+..|+.+
T Consensus 23 ~~A~~~~~~al~~~---p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 99 (514)
T 2gw1_A 23 DDAIKYYNWALELK---EDPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASANEGLGKFADAMFDLSVL 99 (514)
T ss_dssp HHHHHHHHHHHHHC---CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcC---ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 35677788888775 589999999999999999999999999764 445678999999999999999999999999
Q ss_pred HHCCCCCCcccHHHHHHHHHccCCchHHHHHHHHHHHhCCCCCchHHHHHH---HHHHccCChHHHHHHHhhcC------
Q 038200 79 IKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLI---NMYGCFGAMDCARNMFVQMS------ 149 (523)
Q Consensus 79 ~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~---~~~~~~g~~~~A~~~~~~~~------ 149 (523)
.+.+ +++......++..+........+.+.+..+...+..|+......-. ...........+...+....
T Consensus 100 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (514)
T 2gw1_A 100 SLNG-DFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFA 178 (514)
T ss_dssp HHSS-SCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHHHHHHTTSCCCCCCS
T ss_pred HhcC-CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhhcCHHHHHH
Confidence 9876 4566666666666655544444444444333222222111111110 11111112222222222222
Q ss_pred ---CC-CcchHHHHHHHHHh---cCCHHHHHHHHhcCCC----------------C-ChhHHHHHHHHHHhcCCchHHHH
Q 038200 150 ---PR-DLISWNSIVSGHVR---SGDMSAAHELFDIMPE----------------R-NVVSWNIMISGYSKSGNPGCSLK 205 (523)
Q Consensus 150 ---~~-~~~~~~~ll~~~~~---~~~~~~a~~~~~~~~~----------------~-~~~~~~~li~~~~~~~~~~~a~~ 205 (523)
.| +...+......+.. .|++++|...|+++.+ | +..+|..+...+...|++++|..
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~ 258 (514)
T 2gw1_A 179 NYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHE 258 (514)
T ss_dssp SCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHH
T ss_pred HhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHH
Confidence 11 23344444444444 8999999999887654 1 34678888999999999999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHcCCCCchHHHHHHhhhhhhcCChHHHHHHHHhcCC---
Q 038200 206 LFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMAD--- 282 (523)
Q Consensus 206 ~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--- 282 (523)
+|+++.+.. |+...+..+..++...|++++|...++.+.+.. +.+..++..+...|...|++++|...|+++.+
T Consensus 259 ~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 335 (514)
T 2gw1_A 259 DIKKAIELF--PRVNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDP 335 (514)
T ss_dssp HHHHHHHHC--CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCS
T ss_pred HHHHHHhhC--ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCh
Confidence 999999864 448888999999999999999999999998875 34678899999999999999999999998743
Q ss_pred CChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhHhcCCCCC--
Q 038200 283 RNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPN-- 360 (523)
Q Consensus 283 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-- 360 (523)
.+...+..+...|...|++++|...++++.... +.+...+..+...+...|++++|...++++.+...-.++
T Consensus 336 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~------~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~ 409 (514)
T 2gw1_A 336 ENIFPYIQLACLAYRENKFDDCETLFSEAKRKF------PEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIY 409 (514)
T ss_dssp SCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS------TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCS
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc------ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHH
Confidence 466789999999999999999999999999853 335678889999999999999999999999874222222
Q ss_pred --hHHHHHHHHHHHc---CCChHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhhH
Q 038200 361 --FAHYWCMANLYAG---AELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRY 435 (523)
Q Consensus 361 --~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 435 (523)
...+..+...+.. .|++++|.+.++++.+. .+.+...+..+...+...|++++|...++++.+++|+++..+
T Consensus 410 ~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~---~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~ 486 (514)
T 2gw1_A 410 VGIAPLVGKATLLTRNPTVENFIEATNLLEKASKL---DPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTMEEKL 486 (514)
T ss_dssp SCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSHHHHH
T ss_pred HHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHh---CcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhccccHHHH
Confidence 3488899999999 99999999999998853 233567788888999999999999999999999999888777
Q ss_pred HHH
Q 038200 436 QFL 438 (523)
Q Consensus 436 ~~l 438 (523)
..+
T Consensus 487 ~~~ 489 (514)
T 2gw1_A 487 QAI 489 (514)
T ss_dssp HHH
T ss_pred HHH
Confidence 665
No 9
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.94 E-value=6.2e-24 Score=213.20 Aligned_cols=424 Identities=8% Similarity=-0.028 Sum_probs=318.4
Q ss_pred hhHHHHHHHHhhccCCchhHHHHhccCC---CCCcccHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCcccHHHHHHHH
Q 038200 21 SFWTINLLKHSADFGSPDYTVLVFKCIN---NPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSC 97 (523)
Q Consensus 21 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~ 97 (523)
+..+..+...+.+.|++++|++.|+++. +.+..+|..+...+.+.|++++|++.|+++.+.+ +.+..++..+..++
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~ 103 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASAN 103 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHHH
Confidence 4566677778888888888888888764 3466778888888888888888888888888764 44566777888888
Q ss_pred HccCCchHHHHHHHHHHHhCCCCCchHHHHHHHHHHccCChHHHHHHHhhcCCC------CcchHHHHHHHHHhcCCHHH
Q 038200 98 AKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPR------DLISWNSIVSGHVRSGDMSA 171 (523)
Q Consensus 98 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~ll~~~~~~~~~~~ 171 (523)
...|++++|...++ ..... |+ .....+..+...+....|...++++... ........+..+....+.+.
T Consensus 104 ~~~g~~~~A~~~~~-~~~~~--~~--~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (537)
T 3fp2_A 104 ESLGNFTDAMFDLS-VLSLN--GD--FDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHL 178 (537)
T ss_dssp HHHTCHHHHHHHHH-HHC---------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHH
T ss_pred HHcCCHHHHHHHHH-HHhcC--CC--CChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHH
Confidence 88888888888885 33222 22 1122233444555567777777777532 22334455566667778888
Q ss_pred HHHHHhcCCCCChh---HHHHHHHHHHh--------cCCchHHHHHHHHHHHCCCCCC--------HHHHHHHHHHHhcc
Q 038200 172 AHELFDIMPERNVV---SWNIMISGYSK--------SGNPGCSLKLFREMMKSGFRGN--------DKTMASVLTACGRS 232 (523)
Q Consensus 172 a~~~~~~~~~~~~~---~~~~li~~~~~--------~~~~~~a~~~~~~m~~~~~~p~--------~~~~~~ll~~~~~~ 232 (523)
+...+......+.. ....+...+.. .|++++|..+|+++.+.. |+ ..++..+...+...
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~--p~~~~~~~~~~~~~~~~g~~~~~~ 256 (537)
T 3fp2_A 179 EVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSAN--TVDDPLRENAALALCYTGIFHFLK 256 (537)
T ss_dssp HHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHC--CCcchhhHHHHHHHHHHHHHHHhc
Confidence 88777777664332 33333333322 247899999999998753 43 23566777888899
Q ss_pred ccHHHHHHHHHHHHHcCCCCchHHHHHHhhhhhhcCChHHHHHHHHhcCC---CChHHHHHHHHHHHhcCChHHHHHHHH
Q 038200 233 ARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMAD---RNLVCWNAMILGHCIHGKPEEGIKLFT 309 (523)
Q Consensus 233 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~ 309 (523)
|++++|...++.+.+.. |+...+..+...+...|++++|...|+++.+ .+..+|..+...+...|++++|...|+
T Consensus 257 ~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 334 (537)
T 3fp2_A 257 NNLLDAQVLLQESINLH--PTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQ 334 (537)
T ss_dssp TCHHHHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 99999999999999875 4578888999999999999999999998754 467889999999999999999999999
Q ss_pred HHHhCCCCCCCcCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhHhcCCCCChHHHHHHHHHHHcCCChHHHHHHHHhCCC
Q 038200 310 ALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPE 389 (523)
Q Consensus 310 ~m~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 389 (523)
++.... +.+...+..+...+...|++++|..+++++.+. .+.+...+..+...+...|++++|.+.++++.+
T Consensus 335 ~a~~~~------~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 406 (537)
T 3fp2_A 335 KAQSLN------PENVYPYIQLACLLYKQGKFTESEAFFNETKLK--FPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKR 406 (537)
T ss_dssp HHHHHC------TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhC------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 999854 334678889999999999999999999999984 445678899999999999999999999998764
Q ss_pred CCC---CCCchHHHHHHHHHHHHhc----------CCHHHHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChhHHHHHHH
Q 038200 390 DND---NMSFESIMWVSLLSLCRFQ----------GAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRE 456 (523)
Q Consensus 390 ~~~---~~~~~~~~~~~l~~~~~~~----------g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 456 (523)
... ........+......+... |++++|...++++.+.+|+++.++..++.+|.+.|++++|...|+
T Consensus 407 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 486 (537)
T 3fp2_A 407 LEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFE 486 (537)
T ss_dssp HHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 210 0111122344445667777 999999999999999999999999999999999999999999999
Q ss_pred HHHhCC
Q 038200 457 LMKKRR 462 (523)
Q Consensus 457 ~m~~~~ 462 (523)
+..+..
T Consensus 487 ~al~~~ 492 (537)
T 3fp2_A 487 DSAILA 492 (537)
T ss_dssp HHHHHC
T ss_pred HHHHhC
Confidence 997754
No 10
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.93 E-value=1.2e-23 Score=206.30 Aligned_cols=327 Identities=9% Similarity=0.010 Sum_probs=238.0
Q ss_pred CcccHHHHHHHHHccCCchHHHHHHHHHHHhCCCCCchHHHHHHHHHHccCChHHHHHHHhhcCCCCcchHHHHHHHHHh
Q 038200 86 NSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVR 165 (523)
Q Consensus 86 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~ 165 (523)
+...+..+...+.+.|++++|..+|+.+++..+. +..++..+..+|...|++++|...|+++.+.
T Consensus 25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-------------- 89 (450)
T 2y4t_A 25 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPD-NYIAYYRRATVFLAMGKSKAALPDLTKVIQL-------------- 89 (450)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------------
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--------------
Confidence 4445555666666666666666666666655322 4555555555666555555555555554310
Q ss_pred cCCHHHHHHHHhcCCCCChhHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCH----HHHHH------------HHHHH
Q 038200 166 SGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGND----KTMAS------------VLTAC 229 (523)
Q Consensus 166 ~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~----~~~~~------------ll~~~ 229 (523)
...+..+|..++.+|.+.|++++|...|+++.+.. |+. ..+.. +...+
T Consensus 90 --------------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 153 (450)
T 2y4t_A 90 --------------KMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSN--PSENEEKEAQSQLIKSDEMQRLRSQALNA 153 (450)
T ss_dssp --------------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --------------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCChhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 01234455556666666666666666666665532 222 23333 34457
Q ss_pred hccccHHHHHHHHHHHHHcCCCCchHHHHHHhhhhhhcCChHHHHHHHHhcCC---CChHHHHHHHHHHHhcCChHHHHH
Q 038200 230 GRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMAD---RNLVCWNAMILGHCIHGKPEEGIK 306 (523)
Q Consensus 230 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~ 306 (523)
...|++++|...++.+.+.. +.+..++..++.+|...|++++|...|+++.+ .+..+|..++..|...|++++|+.
T Consensus 154 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 232 (450)
T 2y4t_A 154 FGSGDYTAAIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLS 232 (450)
T ss_dssp HHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 78899999999999988864 34678888899999999999999999988754 467889999999999999999999
Q ss_pred HHHHHHhCCCCCCCcCCCH-HHHHHH------------HHHHhhcCcHHHHHHHHHHhhHhcCCCCC-----hHHHHHHH
Q 038200 307 LFTALVNGTVAGGSISPDE-ITFIGV------------ICACVRAELLTEGRKYFRQMIDFYKIKPN-----FAHYWCMA 368 (523)
Q Consensus 307 ~~~~m~~~~~~~~~~~p~~-~~~~~l------------l~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~~l~ 368 (523)
.|+++... .|+. ..+..+ ...|...|++++|..+|+++.+. .|+ ...|..++
T Consensus 233 ~~~~~~~~-------~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~---~p~~~~~~~~~~~~l~ 302 (450)
T 2y4t_A 233 EVRECLKL-------DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT---EPSIAEYTVRSKERIC 302 (450)
T ss_dssp HHHHHHHH-------CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CCSSHHHHHHHHHHHH
T ss_pred HHHHHHHh-------CCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCcchHHHHHHHHHHH
Confidence 99999874 4553 344443 78899999999999999999884 333 45788899
Q ss_pred HHHHcCCChHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhhHHHHHHH-------
Q 038200 369 NLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNV------- 441 (523)
Q Consensus 369 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~------- 441 (523)
.++.+.|++++|.+.++++.+. .+.+...+..+..+|...|++++|...++++.+++|+++.++..+..+
T Consensus 303 ~~~~~~g~~~~A~~~~~~a~~~---~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~ 379 (450)
T 2y4t_A 303 HCFSKDEKPVEAIRVCSEVLQM---EPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQS 379 (450)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHh---CcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcc
Confidence 9999999999999999998753 234678899999999999999999999999999999999999998844
Q ss_pred -----HHhcC-----ChhHHHHHHHH
Q 038200 442 -----YAVAG-----QWEDVARVREL 457 (523)
Q Consensus 442 -----~~~~g-----~~~~A~~~~~~ 457 (523)
|...| +.+++.+.+++
T Consensus 380 ~~~~~y~~lg~~~~~~~~~~~~~y~~ 405 (450)
T 2y4t_A 380 QKRDYYKILGVKRNAKKQEIIKAYRK 405 (450)
T ss_dssp HSCCSGGGSCSSTTCCTTHHHHHHHH
T ss_pred cchhHHHHhCCCccCCHHHHHHHHHH
Confidence 55555 45566777765
No 11
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.93 E-value=1.8e-23 Score=204.94 Aligned_cols=377 Identities=9% Similarity=0.004 Sum_probs=259.0
Q ss_pred hHHHHhccCC---CCCcccHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCcccHHHHHHHHHccCCchHHHHHHHHHHH
Q 038200 39 YTVLVFKCIN---NPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALK 115 (523)
Q Consensus 39 ~A~~~~~~~~---~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 115 (523)
.+...|.... +.+...|..+...+.+.|++++|+.+|+.+.+.. +.+..++..+..++...|++++|...++.+++
T Consensus 10 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 88 (450)
T 2y4t_A 10 GVDLGTENLYFQSMADVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQ 88 (450)
T ss_dssp -------------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cccccccccccccHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 3444444443 2456689999999999999999999999999863 55778899999999999999999999999999
Q ss_pred hCCCCCchHHHHHHHHHHccCChHHHHHHHhhcCCCC---c---chHHHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHH
Q 038200 116 NGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRD---L---ISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNI 189 (523)
Q Consensus 116 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~---~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 189 (523)
.++. +..++..+..+|.+.|++++|.+.|+++...+ . ..+..+...+.. ..+..
T Consensus 89 ~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------------------~~~~~ 148 (450)
T 2y4t_A 89 LKMD-FTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEM-------------------QRLRS 148 (450)
T ss_dssp HCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHH-------------------HHHHH
T ss_pred cCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHH-------------------HHHHH
Confidence 8744 68899999999999999999999999986432 2 455555443211 11223
Q ss_pred HHHHHHhcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHcCCCCchHHHHHHhhhhhhcCC
Q 038200 190 MISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQK 269 (523)
Q Consensus 190 li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 269 (523)
+...+...|++++|..+|+++.+.. +.+...+..+..++...|++++|...++++.+.. +.+..++..++.+|...|+
T Consensus 149 ~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~ 226 (450)
T 2y4t_A 149 QALNAFGSGDYTAAIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGD 226 (450)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCC
Confidence 3344555566666666666665542 3345555556666666666666666666665543 2345556666666666666
Q ss_pred hHHHHHHHHhcCC--C-ChHHHHH------------HHHHHHhcCChHHHHHHHHHHHhCCCCCCCcCCC-----HHHHH
Q 038200 270 VEVAQRVFDSMAD--R-NLVCWNA------------MILGHCIHGKPEEGIKLFTALVNGTVAGGSISPD-----EITFI 329 (523)
Q Consensus 270 ~~~a~~~~~~~~~--~-~~~~~~~------------li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~p~-----~~~~~ 329 (523)
+++|+..|+++.+ | +...+.. +...+...|++++|...|+++... .|+ ...+.
T Consensus 227 ~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~-------~p~~~~~~~~~~~ 299 (450)
T 2y4t_A 227 HELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT-------EPSIAEYTVRSKE 299 (450)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-------CCSSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-------CCcchHHHHHHHH
Confidence 6666666665532 2 2233333 378888999999999999999884 355 34678
Q ss_pred HHHHHHhhcCcHHHHHHHHHHhhHhcCCCCChHHHHHHHHHHHcCCChHHHHHHHHhCCCCCCCCCch-HHHHHHHHH--
Q 038200 330 GVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFE-SIMWVSLLS-- 406 (523)
Q Consensus 330 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~~~l~~-- 406 (523)
.+...+.+.|++++|...++++.+. .+.+...|..+..+|...|++++|.+.++++.+. .|+ ...+..+..
T Consensus 300 ~l~~~~~~~g~~~~A~~~~~~a~~~--~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~----~p~~~~~~~~l~~~~ 373 (450)
T 2y4t_A 300 RICHCFSKDEKPVEAIRVCSEVLQM--EPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEH----NENDQQIREGLEKAQ 373 (450)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT----SSSCHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh----CcchHHHHHHHHHHH
Confidence 8888999999999999999998873 3446788999999999999999999999998853 443 445554442
Q ss_pred ----------HHHhcC-----CHHHHHHHHHH-HhhcCCCCh----------hhHHHHHHHHHhcCChhHH
Q 038200 407 ----------LCRFQG-----AVAMVERLAKS-FVDMDPQDF----------SRYQFLLNVYAVAGQWEDV 451 (523)
Q Consensus 407 ----------~~~~~g-----~~~~a~~~~~~-~~~~~p~~~----------~~~~~l~~~~~~~g~~~~A 451 (523)
.|...| +.+++.+.+++ +.+..|++. ..+..+..+|...|+.+++
T Consensus 374 ~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~~~l~~~pd~~~~~~~~~~a~~~~~~i~~ay~~L~d~~~r 444 (450)
T 2y4t_A 374 RLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEMR 444 (450)
T ss_dssp HHHHHHHSCCSGGGSCSSTTCCTTHHHHHHHHHHHHSCGGGCCSHHHHHHHHHHHHHHHHHHHHSSGGGGC
T ss_pred HHhhcccchhHHHHhCCCccCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHHhCCHHHH
Confidence 233334 56777888886 666766521 2556667777776666554
No 12
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.91 E-value=1.8e-23 Score=209.89 Aligned_cols=437 Identities=8% Similarity=-0.040 Sum_probs=322.8
Q ss_pred cccHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCcccHHHHHHHHHccCCchHHHHHHHHHHHhCCCCCchHHHHHHHH
Q 038200 52 TFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINM 131 (523)
Q Consensus 52 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 131 (523)
...|..+...+.+.|++++|+..|+++.+.. +.+..++..+..++.+.|++++|.+.++.+++.++. +..++..+..+
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~ 102 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPD-HSKALLRRASA 102 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-hHHHHHHHHHH
Confidence 4567888999999999999999999999864 557788999999999999999999999999998744 78899999999
Q ss_pred HHccCChHHHHHHHhhcCCCCcchHHHHHHHHHhcCCHHHHHHHHhcCCCC------ChhHHHHHHHHHHhcCCchHHHH
Q 038200 132 YGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPER------NVVSWNIMISGYSKSGNPGCSLK 205 (523)
Q Consensus 132 ~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~------~~~~~~~li~~~~~~~~~~~a~~ 205 (523)
+...|++++|.+.|+.+. .+.......+..+...+....|...++++... ........+..+....+.+.+..
T Consensus 103 ~~~~g~~~~A~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (537)
T 3fp2_A 103 NESLGNFTDAMFDLSVLS-LNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVS 181 (537)
T ss_dssp HHHHTCHHHHHHHHHHHC------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHh-cCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHH
Confidence 999999999999997553 22222333344555666678888888887641 11122334455666667666665
Q ss_pred HHHHHHHCCCCCCHH-HHHHHHHHHhc--------cccHHHHHHHHHHHHHcCCCCc------hHHHHHHhhhhhhcCCh
Q 038200 206 LFREMMKSGFRGNDK-TMASVLTACGR--------SARFNEGRSVHGYTVRTSLKPN------IILDTALIDLYSKCQKV 270 (523)
Q Consensus 206 ~~~~m~~~~~~p~~~-~~~~ll~~~~~--------~~~~~~a~~~~~~~~~~~~~~~------~~~~~~l~~~~~~~~~~ 270 (523)
.+..... ..+... ....+...+.. .|++++|..+++.+.+...... ..++..+...+...|++
T Consensus 182 ~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~ 259 (537)
T 3fp2_A 182 SVNTSSN--YDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNL 259 (537)
T ss_dssp TSCCCCS--SCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHhhccc--cccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccH
Confidence 5444332 122222 22333333222 2588999999999988643211 23566777888999999
Q ss_pred HHHHHHHHhcCC--CChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcCCCHHHHHHHHHHHhhcCcHHHHHHHH
Q 038200 271 EVAQRVFDSMAD--RNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYF 348 (523)
Q Consensus 271 ~~a~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 348 (523)
++|...|+++.+ |+...|..+...+...|++++|...|+++.... +.+..++..+...+...|++++|...+
T Consensus 260 ~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~------~~~~~~~~~l~~~~~~~~~~~~A~~~~ 333 (537)
T 3fp2_A 260 LDAQVLLQESINLHPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN------PEYPPTYYHRGQMYFILQDYKNAKEDF 333 (537)
T ss_dssp HHHHHHHHHHHHHCCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC------TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC------CCCHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 999999999854 567888999999999999999999999999854 345778999999999999999999999
Q ss_pred HHhhHhcCCCCChHHHHHHHHHHHcCCChHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcC
Q 038200 349 RQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMD 428 (523)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 428 (523)
+++.+. .+.+...+..+...|...|++++|.+.++++.+. .+.+...+..+...+...|++++|...++++.+..
T Consensus 334 ~~a~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 408 (537)
T 3fp2_A 334 QKAQSL--NPENVYPYIQLACLLYKQGKFTESEAFFNETKLK---FPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLE 408 (537)
T ss_dssp HHHHHH--CTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC
Confidence 999984 3445788999999999999999999999998864 23346678888889999999999999999999977
Q ss_pred CCChhh------HHHHHHHHHhc----------CChhHHHHHHHHHHhCCCccCCceeEEEeCCeEEEEecCCCCchHHH
Q 038200 429 PQDFSR------YQFLLNVYAVA----------GQWEDVARVRELMKKRRMGRMPGCRLVDLKEVVEKLKVGHFWRGGMK 492 (523)
Q Consensus 429 p~~~~~------~~~l~~~~~~~----------g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 492 (523)
|+++.. +..++.+|... |++++|...+++..+... ..+. ....+.......++.++++
T Consensus 409 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p-~~~~-----~~~~l~~~~~~~g~~~~A~ 482 (537)
T 3fp2_A 409 EVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDP-RSEQ-----AKIGLAQLKLQMEKIDEAI 482 (537)
T ss_dssp HHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCT-TCHH-----HHHHHHHHHHHTTCHHHHH
T ss_pred CcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCC-CCHH-----HHHHHHHHHHHhccHHHHH
Confidence 654433 45556888888 999999999999977532 1111 1111111222236889999
Q ss_pred HHHHHHHhcccCCccccc
Q 038200 493 EEVNKMMECRQSRSLATV 510 (523)
Q Consensus 493 ~~l~~~~~~~~~~~~~~~ 510 (523)
+.+++.++..|+......
T Consensus 483 ~~~~~al~~~~~~~~~~~ 500 (537)
T 3fp2_A 483 ELFEDSAILARTMDEKLQ 500 (537)
T ss_dssp HHHHHHHHHC--CHHHHH
T ss_pred HHHHHHHHhCCCcHHHHH
Confidence 999999999998776544
No 13
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.88 E-value=3.2e-20 Score=175.75 Aligned_cols=317 Identities=9% Similarity=-0.036 Sum_probs=216.1
Q ss_pred cccHHHHHHHHHccCCchHHHHHHHHHHHhCCCCCchHHHHHHHHHHccCChHHHHHHHhhcCCCCcchHHHHHHHHHhc
Q 038200 87 SYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRS 166 (523)
Q Consensus 87 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~ 166 (523)
...+..+...+...|++++|...++.+++..+. +..++..+..++...|++++|...|+++...
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--------------- 66 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGDPD-NYIAYYRRATVFLAMGKSKAALPDLTKVIAL--------------- 66 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---------------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHh---------------
Confidence 345566666677777777777777777766433 5566666666666666666666666554310
Q ss_pred CCHHHHHHHHhcCCCCChhHHHHHHHHHHhcCCchHHHHHHHHHHHCCCC--CCHHHHHH------------HHHHHhcc
Q 038200 167 GDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFR--GNDKTMAS------------VLTACGRS 232 (523)
Q Consensus 167 ~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~--p~~~~~~~------------ll~~~~~~ 232 (523)
...+...|..+...+...|++++|...|++..+.... .+...+.. +...+...
T Consensus 67 -------------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 133 (359)
T 3ieg_A 67 -------------KMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDG 133 (359)
T ss_dssp -------------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred -------------CCCcchHHHHHHHHHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 0013344555555555555555555555555553210 12222222 24667778
Q ss_pred ccHHHHHHHHHHHHHcCCCCchHHHHHHhhhhhhcCChHHHHHHHHhcCC---CChHHHHHHHHHHHhcCChHHHHHHHH
Q 038200 233 ARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMAD---RNLVCWNAMILGHCIHGKPEEGIKLFT 309 (523)
Q Consensus 233 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~ 309 (523)
|++++|...++.+.+.. +.+..++..+...+...|++++|...++++.+ .+...+..+...+...|++++|...|+
T Consensus 134 ~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 212 (359)
T 3ieg_A 134 ADYTAAITFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVR 212 (359)
T ss_dssp TCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 88888888888887764 34667777888888888888888888887644 356788888888888899999999998
Q ss_pred HHHhCCCCCCCcCCC-HHHHH------------HHHHHHhhcCcHHHHHHHHHHhhHhcCCCCCh----HHHHHHHHHHH
Q 038200 310 ALVNGTVAGGSISPD-EITFI------------GVICACVRAELLTEGRKYFRQMIDFYKIKPNF----AHYWCMANLYA 372 (523)
Q Consensus 310 ~m~~~~~~~~~~~p~-~~~~~------------~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~~l~~~~~ 372 (523)
+..+.. |+ ...+. .+...+.+.|++++|...++++.+.. +.+. ..+..+..++.
T Consensus 213 ~a~~~~-------~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~la~~~~ 283 (359)
T 3ieg_A 213 ECLKLD-------QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE--PSVAEYTVRSKERICHCFS 283 (359)
T ss_dssp HHHHHC-------TTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CSSHHHHHHHHHHHHHHHH
T ss_pred HHHhhC-------ccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHHHHH
Confidence 888743 44 33222 23556788889999999998888741 2222 33556778888
Q ss_pred cCCChHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhhHHHHHHHHHhc
Q 038200 373 GAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVA 445 (523)
Q Consensus 373 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 445 (523)
..|++++|.+.++++.+. .+.+...+..+...+...|++++|...++++.+++|+++.++..+..++...
T Consensus 284 ~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~ 353 (359)
T 3ieg_A 284 KDEKPVEAIRICSEVLQM---EPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRLL 353 (359)
T ss_dssp HTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHH
T ss_pred HccCHHHHHHHHHHHHHh---CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHH
Confidence 899999999999888753 2335677888888888889999999999999999898888888777766543
No 14
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.88 E-value=7.1e-20 Score=173.33 Aligned_cols=295 Identities=8% Similarity=0.030 Sum_probs=243.3
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHhcCCC---CChhHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHh
Q 038200 154 ISWNSIVSGHVRSGDMSAAHELFDIMPE---RNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACG 230 (523)
Q Consensus 154 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~ 230 (523)
..+..+...+...|++++|...|+++.+ .+..+|..+..++...|++++|...++++.+.. +.+...+..+..++.
T Consensus 4 ~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 82 (359)
T 3ieg_A 4 EKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGHLLL 82 (359)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHHHHH
Confidence 3455566667777777777777777643 356788999999999999999999999999863 346788999999999
Q ss_pred ccccHHHHHHHHHHHHHcCCC--CchHHHHHH------------hhhhhhcCChHHHHHHHHhcCC---CChHHHHHHHH
Q 038200 231 RSARFNEGRSVHGYTVRTSLK--PNIILDTAL------------IDLYSKCQKVEVAQRVFDSMAD---RNLVCWNAMIL 293 (523)
Q Consensus 231 ~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l------------~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~ 293 (523)
..|++++|...++.+.+.... .+...+..+ ...+...|++++|...++++.+ .+...+..+..
T Consensus 83 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 162 (359)
T 3ieg_A 83 KQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRAE 162 (359)
T ss_dssp HHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHH
Confidence 999999999999999986420 244555544 5788999999999999998753 46788999999
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCCCCcCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhHhcCCCCChHHHH--------
Q 038200 294 GHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYW-------- 365 (523)
Q Consensus 294 ~~~~~g~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-------- 365 (523)
.+...|++++|...++++.... +.+..++..+...+...|++++|...++++.+. .+.+...+.
T Consensus 163 ~~~~~~~~~~A~~~~~~~~~~~------~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~ 234 (359)
T 3ieg_A 163 CFIKEGEPRKAISDLKAASKLK------SDNTEAFYKISTLYYQLGDHELSLSEVRECLKL--DQDHKRCFAHYKQVKKL 234 (359)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTC------SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CccchHHHHHHHHHHHH
Confidence 9999999999999999999864 446788999999999999999999999999884 233334333
Q ss_pred ----HHHHHHHcCCChHHHHHHHHhCCCCCCCCCch-H----HHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhhHH
Q 038200 366 ----CMANLYAGAELTEEAEEILRKMPEDNDNMSFE-S----IMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQ 436 (523)
Q Consensus 366 ----~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 436 (523)
.+...+.+.|++++|.+.++++.+. .|+ . ..+..+...+...|++++|...++++.+.+|+++.++.
T Consensus 235 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~----~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 310 (359)
T 3ieg_A 235 NKLIESAEELIRDGRYTDATSKYESVMKT----EPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALK 310 (359)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhc----CCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHH
Confidence 3366789999999999999998853 232 2 23455677899999999999999999999999999999
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhC
Q 038200 437 FLLNVYAVAGQWEDVARVRELMKKR 461 (523)
Q Consensus 437 ~l~~~~~~~g~~~~A~~~~~~m~~~ 461 (523)
.++.+|...|++++|...+++..+.
T Consensus 311 ~~~~~~~~~g~~~~A~~~~~~a~~~ 335 (359)
T 3ieg_A 311 DRAEAYLIEEMYDEAIQDYEAAQEH 335 (359)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 9999999999999999999999765
No 15
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.85 E-value=2.4e-19 Score=167.60 Aligned_cols=284 Identities=10% Similarity=0.013 Sum_probs=192.1
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHhcCCC---CChhHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc
Q 038200 155 SWNSIVSGHVRSGDMSAAHELFDIMPE---RNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGR 231 (523)
Q Consensus 155 ~~~~ll~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 231 (523)
.+..+...+...|++++|..+|+++.+ .+...+..++.++...|++++|..+++++.+.. +.+...+..+...+..
T Consensus 24 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 102 (330)
T 3hym_B 24 VVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVGCYYLM 102 (330)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHH
Confidence 333334444444444444444444332 233444555556666666666666666666542 3345566666666666
Q ss_pred cc-cHHHHHHHHHHHHHcCCCCchHHHHHHhhhhhhcCChHHHHHHHHhcCC---CChHHHHHHHHHHHhcCChHHHHHH
Q 038200 232 SA-RFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMAD---RNLVCWNAMILGHCIHGKPEEGIKL 307 (523)
Q Consensus 232 ~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~ 307 (523)
.| ++++|...++++.+.. +.+...+..+...+...|++++|...|+++.+ .+...+..+...|...|++++|...
T Consensus 103 ~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 181 (330)
T 3hym_B 103 VGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERF 181 (330)
T ss_dssp SCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHHHHHH
Confidence 66 6666777776666653 22455666667777777777777777766543 2345666677788888888888888
Q ss_pred HHHHHhCCCCCCCcCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhHhcC-------CCCChHHHHHHHHHHHcCCChHHH
Q 038200 308 FTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYK-------IKPNFAHYWCMANLYAGAELTEEA 380 (523)
Q Consensus 308 ~~~m~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-------~~~~~~~~~~l~~~~~~~g~~~~A 380 (523)
++++.... +.+...+..+...+...|++++|...++++.+... .+.....+..+..+|...|++++|
T Consensus 182 ~~~al~~~------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 255 (330)
T 3hym_B 182 FSQALSIA------PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEA 255 (330)
T ss_dssp HHHHHTTC------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHhC------CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHH
Confidence 88887753 33467777888888888888888888888776421 133467888888889999999999
Q ss_pred HHHHHhCCCCCCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhhHHHHHHHHH-hcCChh
Q 038200 381 EEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYA-VAGQWE 449 (523)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~-~~g~~~ 449 (523)
.+.++++.+. .+.+...+..+...+...|++++|...++++.+++|+++.++..++.++. ..|+.+
T Consensus 256 ~~~~~~a~~~---~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 256 LDYHRQALVL---IPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp HHHHHHHHHH---STTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHHHTTTTC--
T ss_pred HHHHHHHHhh---CccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHhCchh
Confidence 9999888753 23346677788888889999999999999999999988888888888884 555543
No 16
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.85 E-value=8.2e-20 Score=173.77 Aligned_cols=258 Identities=12% Similarity=-0.041 Sum_probs=189.4
Q ss_pred hHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHcCCCCchHHHHHHhhhh
Q 038200 185 VSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLY 264 (523)
Q Consensus 185 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 264 (523)
..+..+...+...|++++|..+|+++.+.. +.+..++..+..++...|++++|...++++.+.. +.+..++..+..+|
T Consensus 65 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~ 142 (368)
T 1fch_A 65 PQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSF 142 (368)
T ss_dssp SSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 345555555666666666666666665542 3344555555556666666666666666655543 22455555566666
Q ss_pred hhcCChHHHHHHHHhcCC--C-ChHHH----------------HHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcCCC-
Q 038200 265 SKCQKVEVAQRVFDSMAD--R-NLVCW----------------NAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPD- 324 (523)
Q Consensus 265 ~~~~~~~~a~~~~~~~~~--~-~~~~~----------------~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~p~- 324 (523)
...|++++|...|+++.+ | +...+ ..+.. +...|++++|...|+++.... |+
T Consensus 143 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~A~~~~~~a~~~~-------p~~ 214 (368)
T 1fch_A 143 TNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGS-LLSDSLFLEVKELFLAAVRLD-------PTS 214 (368)
T ss_dssp HHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHH-HHHHHHHHHHHHHHHHHHHHS-------TTS
T ss_pred HHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHH-HhhcccHHHHHHHHHHHHHhC-------cCc
Confidence 666666666666655432 1 11111 12333 338899999999999999854 44
Q ss_pred --HHHHHHHHHHHhhcCcHHHHHHHHHHhhHhcCCCCChHHHHHHHHHHHcCCChHHHHHHHHhCCCCCCCCCchHHHHH
Q 038200 325 --EITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWV 402 (523)
Q Consensus 325 --~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 402 (523)
..++..+...+...|++++|...++++.+. .+.+...+..+...+...|++++|.+.++++.+. .+.+...+.
T Consensus 215 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~---~~~~~~~~~ 289 (368)
T 1fch_A 215 IDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV--RPNDYLLWNKLGATLANGNQSEEAVAAYRRALEL---QPGYIRSRY 289 (368)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHH
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCcHHHHH
Confidence 788999999999999999999999999884 3446789999999999999999999999998853 234577888
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhcCCCC-----------hhhHHHHHHHHHhcCChhHHHHHHHH
Q 038200 403 SLLSLCRFQGAVAMVERLAKSFVDMDPQD-----------FSRYQFLLNVYAVAGQWEDVARVREL 457 (523)
Q Consensus 403 ~l~~~~~~~g~~~~a~~~~~~~~~~~p~~-----------~~~~~~l~~~~~~~g~~~~A~~~~~~ 457 (523)
.+...+...|++++|...++++.++.|++ ..+|..++.+|...|++++|..++++
T Consensus 290 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 355 (368)
T 1fch_A 290 NLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADAR 355 (368)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTT
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHH
Confidence 89999999999999999999999988876 78999999999999999999988763
No 17
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.84 E-value=1.9e-17 Score=163.68 Aligned_cols=376 Identities=14% Similarity=0.027 Sum_probs=302.6
Q ss_pred HHHHhccC-CCCCcccHHHHHHHHHh----CCCchHHHHHHHHHHHCCCCCCcccHHHHHHHHHc----cCCchHHHHHH
Q 038200 40 TVLVFKCI-NNPGTFCVNAVIKAYSN----SCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAK----TGCVERGGMCH 110 (523)
Q Consensus 40 A~~~~~~~-~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~----~~~~~~a~~~~ 110 (523)
+.+.+... ...+..++..+...|.. .+++++|+..|++..+.| +...+..+...+.. .+++++|...|
T Consensus 26 ~~~~~~~~a~~g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~ 102 (490)
T 2xm6_A 26 NLEQLKQKAESGEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWY 102 (490)
T ss_dssp CHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHH
Confidence 34444433 34577788888888888 899999999999998864 56677788888887 88999999999
Q ss_pred HHHHHhCCCCCchHHHHHHHHHHc----cCChHHHHHHHhhcCCC-CcchHHHHHHHHHh----cCCHHHHHHHHhcCCC
Q 038200 111 GLALKNGVDFELPVMNSLINMYGC----FGAMDCARNMFVQMSPR-DLISWNSIVSGHVR----SGDMSAAHELFDIMPE 181 (523)
Q Consensus 111 ~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~-~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~ 181 (523)
+...+.| +...+..|..+|.. .+++++|.+.|++.... +...+..+...|.. .+++++|...|++..+
T Consensus 103 ~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~ 179 (490)
T 2xm6_A 103 KKAALKG---LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAE 179 (490)
T ss_dssp HHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred HHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH
Confidence 9998875 66777888888887 78999999999987643 66777778888877 7899999999988754
Q ss_pred -CChhHHHHHHHHHHh----cCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc----cccHHHHHHHHHHHHHcCCCC
Q 038200 182 -RNVVSWNIMISGYSK----SGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGR----SARFNEGRSVHGYTVRTSLKP 252 (523)
Q Consensus 182 -~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~ 252 (523)
.+...+..+...|.. .+++++|..+|++..+.| +...+..+...+.. .+++++|..+|++..+.+
T Consensus 180 ~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~--- 253 (490)
T 2xm6_A 180 QGNVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG--- 253 (490)
T ss_dssp TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---
T ss_pred CCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---
Confidence 577888888888888 899999999999998865 55677777777765 789999999999998865
Q ss_pred chHHHHHHhhhhhh----cCChHHHHHHHHhcCC-CChHHHHHHHHHHHhc-----CChHHHHHHHHHHHhCCCCCCCcC
Q 038200 253 NIILDTALIDLYSK----CQKVEVAQRVFDSMAD-RNLVCWNAMILGHCIH-----GKPEEGIKLFTALVNGTVAGGSIS 322 (523)
Q Consensus 253 ~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~-~~~~~~~~li~~~~~~-----g~~~~a~~~~~~m~~~~~~~~~~~ 322 (523)
+...+..+...|.. .++.++|...|++..+ .+...+..+...|... +++++|+..|++..+.+
T Consensus 254 ~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~------- 326 (490)
T 2xm6_A 254 NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQGNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG------- 326 (490)
T ss_dssp CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT-------
T ss_pred CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC-------
Confidence 45566677777777 8899999999998865 4667788888888887 89999999999998865
Q ss_pred CCHHHHHHHHHHHhhcC---cHHHHHHHHHHhhHhcCCCCChHHHHHHHHHHHc----CCChHHHHHHHHhCCCCCCCCC
Q 038200 323 PDEITFIGVICACVRAE---LLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAG----AELTEEAEEILRKMPEDNDNMS 395 (523)
Q Consensus 323 p~~~~~~~ll~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~ 395 (523)
+...+..+...|...| +.++|.++|++..+. .++..+..|...|.. .+++++|.+.|++..+.
T Consensus 327 -~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~----~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~----- 396 (490)
T 2xm6_A 327 -DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK----GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQ----- 396 (490)
T ss_dssp -CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-----
T ss_pred -CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhC-----
Confidence 3456667777777656 889999999999884 367788889999988 89999999999998853
Q ss_pred chHHHHHHHHHHHHh----cCCHHHHHHHHHHHhhcCCC---ChhhHHHHHHHHHh
Q 038200 396 FESIMWVSLLSLCRF----QGAVAMVERLAKSFVDMDPQ---DFSRYQFLLNVYAV 444 (523)
Q Consensus 396 ~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~p~---~~~~~~~l~~~~~~ 444 (523)
.+...+..+...|.. .++.++|...++++.+.+|+ ++.+...|+.++..
T Consensus 397 ~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~~a~~~l~~~~~~ 452 (490)
T 2xm6_A 397 GLSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMNLFGTENRNITEKKLTAK 452 (490)
T ss_dssp TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHTTSCHH
T ss_pred CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCCCcCCHHHHHHHHhcCHh
Confidence 245567777777877 79999999999999998854 66677777666554
No 18
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.84 E-value=8.8e-19 Score=163.81 Aligned_cols=269 Identities=12% Similarity=0.005 Sum_probs=232.2
Q ss_pred CChhHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHcCCCCchHHHHHHh
Q 038200 182 RNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALI 261 (523)
Q Consensus 182 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 261 (523)
.+...+..++..+...|++++|..+|+++.+.. +.+...+..++.++...|++++|..+++++.+.. +.+..++..+.
T Consensus 20 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 97 (330)
T 3hym_B 20 ENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVG 97 (330)
T ss_dssp CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHH
Confidence 466778888899999999999999999998864 4455677778888999999999999999999875 34678888999
Q ss_pred hhhhhcC-ChHHHHHHHHhcCC---CChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcCCCHHHHHHHHHHHhh
Q 038200 262 DLYSKCQ-KVEVAQRVFDSMAD---RNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVR 337 (523)
Q Consensus 262 ~~~~~~~-~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~ll~~~~~ 337 (523)
..+...| ++++|...|+++.+ .+...|..+...+...|++++|...|+++.... +.+...+..+...+..
T Consensus 98 ~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~------~~~~~~~~~l~~~~~~ 171 (330)
T 3hym_B 98 CYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM------KGCHLPMLYIGLEYGL 171 (330)
T ss_dssp HHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT------TTCSHHHHHHHHHHHH
T ss_pred HHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc------cccHHHHHHHHHHHHH
Confidence 9999999 99999999998754 356789999999999999999999999999854 3346677778999999
Q ss_pred cCcHHHHHHHHHHhhHhcCCCCChHHHHHHHHHHHcCCChHHHHHHHHhCCCCC------CCCCchHHHHHHHHHHHHhc
Q 038200 338 AELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDN------DNMSFESIMWVSLLSLCRFQ 411 (523)
Q Consensus 338 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~------~~~~~~~~~~~~l~~~~~~~ 411 (523)
.|++++|...++++.+ ..+.+...+..+...+...|++++|.+.++++.+.. ...+.....+..+...+...
T Consensus 172 ~~~~~~A~~~~~~al~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~ 249 (330)
T 3hym_B 172 TNNSKLAERFFSQALS--IAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKL 249 (330)
T ss_dssp TTCHHHHHHHHHHHHT--TCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHT
T ss_pred HhhHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHh
Confidence 9999999999999988 345568899999999999999999999998876421 00133456888899999999
Q ss_pred CCHHHHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 038200 412 GAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKK 460 (523)
Q Consensus 412 g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 460 (523)
|++++|...++++.+..|+++.++..++.+|...|++++|...+++..+
T Consensus 250 g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 298 (330)
T 3hym_B 250 KKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALG 298 (330)
T ss_dssp TCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTT
T ss_pred cCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHc
Confidence 9999999999999999999999999999999999999999999998754
No 19
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.83 E-value=9.6e-17 Score=158.66 Aligned_cols=363 Identities=10% Similarity=-0.021 Sum_probs=302.7
Q ss_pred HHHHHHHHHHHCCCCCCcccHHHHHHHHHc----cCCchHHHHHHHHHHHhCCCCCchHHHHHHHHHHc----cCChHHH
Q 038200 70 QGVVFYLQMIKNGFMPNSYTFVSLFGSCAK----TGCVERGGMCHGLALKNGVDFELPVMNSLINMYGC----FGAMDCA 141 (523)
Q Consensus 70 ~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A 141 (523)
.++..++...+.| +...+..+...+.. .+++++|...++...+.| +...+..|...|.. .+++++|
T Consensus 25 ~~~~~~~~~a~~g---~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A 98 (490)
T 2xm6_A 25 VNLEQLKQKAESG---EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQA 98 (490)
T ss_dssp CCHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHH
T ss_pred HHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHH
Confidence 3455666655543 66677777777776 789999999999998875 67788889999998 8999999
Q ss_pred HHHHhhcCC-CCcchHHHHHHHHHh----cCCHHHHHHHHhcCCC-CChhHHHHHHHHHHh----cCCchHHHHHHHHHH
Q 038200 142 RNMFVQMSP-RDLISWNSIVSGHVR----SGDMSAAHELFDIMPE-RNVVSWNIMISGYSK----SGNPGCSLKLFREMM 211 (523)
Q Consensus 142 ~~~~~~~~~-~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~-~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~ 211 (523)
.+.|++..+ .+...+..+...|.. .+++++|...|++..+ .+...+..+...|.. .+++++|+++|++..
T Consensus 99 ~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~ 178 (490)
T 2xm6_A 99 VIWYKKAALKGLPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAA 178 (490)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH
Confidence 999999874 467778888888888 8899999999998765 467788888888887 889999999999999
Q ss_pred HCCCCCCHHHHHHHHHHHhc----cccHHHHHHHHHHHHHcCCCCchHHHHHHhhhhhh----cCChHHHHHHHHhcCC-
Q 038200 212 KSGFRGNDKTMASVLTACGR----SARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSK----CQKVEVAQRVFDSMAD- 282 (523)
Q Consensus 212 ~~~~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~- 282 (523)
+.| +...+..+...|.. .++.++|...|++..+.+ +...+..+...|.. .+++++|...|++..+
T Consensus 179 ~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~ 252 (490)
T 2xm6_A 179 EQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQ 252 (490)
T ss_dssp HTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTT
T ss_pred HCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC
Confidence 875 67778888888877 899999999999999875 55677778888876 7899999999999765
Q ss_pred CChHHHHHHHHHHHh----cCChHHHHHHHHHHHhCCCCCCCcCCCHHHHHHHHHHHhhc-----CcHHHHHHHHHHhhH
Q 038200 283 RNLVCWNAMILGHCI----HGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRA-----ELLTEGRKYFRQMID 353 (523)
Q Consensus 283 ~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~ll~~~~~~-----~~~~~a~~~~~~~~~ 353 (523)
.+...+..+...|.. .++.++|+.+|++..+.+ +...+..+...|... +++++|..+|++..+
T Consensus 253 ~~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~--------~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~ 324 (490)
T 2xm6_A 253 GNSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG--------NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAE 324 (490)
T ss_dssp TCHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT--------CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC--------CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHh
Confidence 466778888888887 899999999999998765 445667777777776 899999999999988
Q ss_pred hcCCCCChHHHHHHHHHHHcCC---ChHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHh----cCCHHHHHHHHHHHhh
Q 038200 354 FYKIKPNFAHYWCMANLYAGAE---LTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRF----QGAVAMVERLAKSFVD 426 (523)
Q Consensus 354 ~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~ 426 (523)
. + +...+..|...|...| ++++|.++|++..+. .+...+..+...|.. .++.++|..+++++.+
T Consensus 325 ~-~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~-----~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~ 395 (490)
T 2xm6_A 325 Q-G---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK-----GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAE 395 (490)
T ss_dssp T-T---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT-----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred c-C---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC-----CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHh
Confidence 4 3 4567778888888767 789999999999853 346677788888888 8999999999999988
Q ss_pred cCCCChhhHHHHHHHHHh----cCChhHHHHHHHHHHhCCC
Q 038200 427 MDPQDFSRYQFLLNVYAV----AGQWEDVARVRELMKKRRM 463 (523)
Q Consensus 427 ~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~~~ 463 (523)
.+ ++.++..|+.+|.. .+++++|...|++..+.+.
T Consensus 396 ~~--~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~ 434 (490)
T 2xm6_A 396 QG--LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDM 434 (490)
T ss_dssp TT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHC
T ss_pred CC--CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCC
Confidence 64 57899999999998 8999999999999988764
No 20
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.83 E-value=5.5e-19 Score=164.63 Aligned_cols=288 Identities=14% Similarity=0.071 Sum_probs=102.2
Q ss_pred hccCCchhHHHHhccCCCCCcccHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCcccHHHHHHHHHccCCchHHHHHHH
Q 038200 32 ADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHG 111 (523)
Q Consensus 32 ~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 111 (523)
.+.|++++|.+++++++.|+ +|..|..++.+.|++++|++.|.+ .+|..+|..++.++...|++++|..+++
T Consensus 14 ~~~~~ld~A~~fae~~~~~~--vWs~La~A~l~~g~~~eAIdsfik------a~D~~~y~~V~~~ae~~g~~EeAi~yl~ 85 (449)
T 1b89_A 14 EHIGNLDRAYEFAERCNEPA--VWSQLAKAQLQKGMVKEAIDSYIK------ADDPSSYMEVVQAANTSGNWEELVKYLQ 85 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHccCHHHHHHHHHhCCChH--HHHHHHHHHHHcCCHHHHHHHHHc------CCCHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 36788999999999997664 999999999999999999999965 3677799999999999999999999888
Q ss_pred HHHHhCCCCCchHHHHHHHHHHccCChHHHHHHHhhcCCCCcchHHHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHH
Q 038200 112 LALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMI 191 (523)
Q Consensus 112 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li 191 (523)
...+. .+++.+.+.++.+|.+.|+++++.++++. |+..+|+.+...|...|.+++|...|..+ ..|..++
T Consensus 86 ~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~---pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a-----~n~~~LA 155 (449)
T 1b89_A 86 MARKK--ARESYVETELIFALAKTNRLAELEEFING---PNNAHIQQVGDRCYDEKMYDAAKLLYNNV-----SNFGRLA 155 (449)
T ss_dssp -------------------------CHHHHTTTTTC---C----------------CTTTHHHHHHHT-----TCHHHHH
T ss_pred HHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHcC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHh-----hhHHHHH
Confidence 77774 44578889999999999999998877753 66668888888888888888888888776 3677777
Q ss_pred HHHHhcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHcCCCCchHHHHHHhhhhhhcCChH
Q 038200 192 SGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVE 271 (523)
Q Consensus 192 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 271 (523)
.++.+.|++++|.+.++++ .+..+|..++.+|...|+++.|......+ ...+.-..
T Consensus 156 ~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L-----~~~ad~l~------------- 211 (449)
T 1b89_A 156 STLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHI-----VVHADELE------------- 211 (449)
T ss_dssp HHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTT-----TTCHHHHH-------------
T ss_pred HHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHH-----HhCHhhHH-------------
Confidence 7777777777777777766 25667777777777777777774332221 11111122
Q ss_pred HHHHHHHhcCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcCCCHHHHHHHHHHHhhc--CcHHHHHHHHH
Q 038200 272 VAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRA--ELLTEGRKYFR 349 (523)
Q Consensus 272 ~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~ll~~~~~~--~~~~~a~~~~~ 349 (523)
.++..|.+.|++++|..+++...... +-....|+.|.-.|++- ++..+.++.|.
T Consensus 212 ------------------~lv~~Yek~G~~eEai~lLe~aL~le------~ah~~~ftel~il~~ky~p~k~~ehl~~~~ 267 (449)
T 1b89_A 212 ------------------ELINYYQDRGYFEELITMLEAALGLE------RAHMGMFTELAILYSKFKPQKMREHLELFW 267 (449)
T ss_dssp ------------------HHHHHHHHTTCHHHHHHHHHHHTTST------TCCHHHHHHHHHHHHTTCHHHHHHHHHHHS
T ss_pred ------------------HHHHHHHHCCCHHHHHHHHHHHhCCc------HHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 34444555555555555555554321 12233444443333332 22333333222
Q ss_pred HhhHhcCCCC------ChHHHHHHHHHHHcCCChHHHHHHHHhCC
Q 038200 350 QMIDFYKIKP------NFAHYWCMANLYAGAELTEEAEEILRKMP 388 (523)
Q Consensus 350 ~~~~~~~~~~------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 388 (523)
+.-.++| +...|.-++..|...++++.|....-+-.
T Consensus 268 ---~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~tm~~h~ 309 (449)
T 1b89_A 268 ---SRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHP 309 (449)
T ss_dssp ---TTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHHHST
T ss_pred ---HHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHhCC
Confidence 2112222 45677788888888888888877655443
No 21
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.83 E-value=4.1e-17 Score=162.97 Aligned_cols=410 Identities=10% Similarity=0.028 Sum_probs=280.2
Q ss_pred CCChhHHHHHHHHhhccCCchhHHHHhccCCC---CCcccHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCcccHHHHH
Q 038200 18 FNNSFWTINLLKHSADFGSPDYTVLVFKCINN---PGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLF 94 (523)
Q Consensus 18 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll 94 (523)
|.+..++..++.. .+.|++++|..+|+++.. .+...|..++..+.+.|++++|..+|+++... .|+...|...+
T Consensus 10 P~~~~~w~~l~~~-~~~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~--~p~~~lw~~~~ 86 (530)
T 2ooe_A 10 PYDLDAWSILIRE-AQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMK--VLHIDLWKCYL 86 (530)
T ss_dssp TTCHHHHHHHHHH-HHSSCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTT--CCCHHHHHHHH
T ss_pred CCCHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--CCChHHHHHHH
Confidence 5688899999984 778999999999998753 35567999999999999999999999999986 47777777766
Q ss_pred HHH-HccCCchHHHH----HHHHHHHh-CCCC-CchHHHHHHHHHHc---------cCChHHHHHHHhhcCC-CCc---c
Q 038200 95 GSC-AKTGCVERGGM----CHGLALKN-GVDF-ELPVMNSLINMYGC---------FGAMDCARNMFVQMSP-RDL---I 154 (523)
Q Consensus 95 ~~~-~~~~~~~~a~~----~~~~~~~~-~~~~-~~~~~~~l~~~~~~---------~g~~~~A~~~~~~~~~-~~~---~ 154 (523)
... ...|+.+.|.+ +|+..+.. |..| +...|...+....+ .|+++.|..+|++... |+. .
T Consensus 87 ~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~ 166 (530)
T 2ooe_A 87 SYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQ 166 (530)
T ss_dssp HHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHH
T ss_pred HHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHH
Confidence 543 34577777665 77776653 5443 45677777776654 5778888888888764 211 1
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHhcCCchHHHHHHHHH------HHCC---CCCCH------
Q 038200 155 SWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREM------MKSG---FRGND------ 219 (523)
Q Consensus 155 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m------~~~~---~~p~~------ 219 (523)
.|..........+. ..+..++. ...+++..|..++..+ .+.. ++|+.
T Consensus 167 ~~~~~~~~e~~~~~-~~~~~~l~-----------------~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~ 228 (530)
T 2ooe_A 167 LWRDYNKYEEGINI-HLAKKMIE-----------------DRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQ 228 (530)
T ss_dssp HHHHHHHHHHHHCH-HHHHHHHH-----------------TTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHH
T ss_pred HHHHHHHHHHhhch-hHHHHHHH-----------------HhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHH
Confidence 22221111000010 11111111 1233455565555542 1211 23331
Q ss_pred --HHHHHHHHHHhc----cccH----HHHHHHHHHHHHcCCCCchHHHHHHhhhhhh-------cCChH-------HHHH
Q 038200 220 --KTMASVLTACGR----SARF----NEGRSVHGYTVRTSLKPNIILDTALIDLYSK-------CQKVE-------VAQR 275 (523)
Q Consensus 220 --~~~~~ll~~~~~----~~~~----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~~-------~a~~ 275 (523)
..|...+..... .++. ..+..+|++++... +.+..+|..++..+.. .|+++ +|..
T Consensus 229 ~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~ 307 (530)
T 2ooe_A 229 QVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAAN 307 (530)
T ss_dssp HHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHH
Confidence 234333322211 1222 36677888888763 3467788888877775 68877 8899
Q ss_pred HHHhcCC---C-ChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcCCCH--HHHHHHHHHHhhcCcHHHHHHHHH
Q 038200 276 VFDSMAD---R-NLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDE--ITFIGVICACVRAELLTEGRKYFR 349 (523)
Q Consensus 276 ~~~~~~~---~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~p~~--~~~~~ll~~~~~~~~~~~a~~~~~ 349 (523)
+|++..+ | +...|..++..+...|++++|..+|+++++. .|+. ..|..++..+.+.|++++|..+|+
T Consensus 308 ~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~-------~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 380 (530)
T 2ooe_A 308 IYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI-------EDIDPTLVYIQYMKFARRAEGIKSGRMIFK 380 (530)
T ss_dssp HHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS-------SSSCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCc-------cccCchHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 9988764 3 4678888889999999999999999999884 4542 478888888888899999999999
Q ss_pred HhhHhcCCCCChHHHHHHHHH-HHcCCChHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcC
Q 038200 350 QMIDFYKIKPNFAHYWCMANL-YAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMD 428 (523)
Q Consensus 350 ~~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 428 (523)
+..+. .+.+...|...+.. +...|+.++|..+|++..+. .+.+...|..++..+...|+.++|..+|+++++..
T Consensus 381 ~Al~~--~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~---~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~ 455 (530)
T 2ooe_A 381 KARED--ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKK---YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSG 455 (530)
T ss_dssp HHHTC--TTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHH---HTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSC
T ss_pred HHHhc--cCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHH---CCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhcc
Confidence 98873 22233444333322 33589999999999988753 23357788888888888999999999999999877
Q ss_pred CCChh----hHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 038200 429 PQDFS----RYQFLLNVYAVAGQWEDVARVRELMKKR 461 (523)
Q Consensus 429 p~~~~----~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 461 (523)
|.++. .|...+......|+.+.+..+++++.+.
T Consensus 456 ~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~ 492 (530)
T 2ooe_A 456 SLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 492 (530)
T ss_dssp CSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 65554 7777788888889999999998888765
No 22
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.82 E-value=3.5e-17 Score=163.50 Aligned_cols=399 Identities=10% Similarity=0.025 Sum_probs=277.4
Q ss_pred chHhHHHHHHHHhCCCCCChhHHHHHHHHhhccCCchhHHHHhccCC--CCCcccHHHHHHHH-HhCCCchHHHH----H
Q 038200 2 KQLLQIQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCIN--NPGTFCVNAVIKAY-SNSCVPDQGVV----F 74 (523)
Q Consensus 2 ~~~~~i~~~~~~~g~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~ll~~~-~~~~~~~~a~~----~ 74 (523)
+.++.+++.+++. .|.++..|..++..+.+.|++++|+++|++.. .|+...|...+... ...|+++.|.+ +
T Consensus 29 ~~a~~~~e~al~~--~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p~~~lw~~~~~~~~~~~~~~~~a~~~~~~~ 106 (530)
T 2ooe_A 29 DKARKTYERLVAQ--FPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVLHIDLWKCYLSYVRETKGKLPSYKEKMAQA 106 (530)
T ss_dssp HHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHTTTSTTHHHHHHHH
T ss_pred HHHHHHHHHHHHH--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHccchhhHHHHHHHH
Confidence 4577888888765 35789999999999999999999999999875 36777777777533 45688887766 7
Q ss_pred HHHHHH-CCCCCC-cccHHHHHHHHHc---------cCCchHHHHHHHHHHHhCCCCCchHHHHHHHHHHccCChHHHHH
Q 038200 75 YLQMIK-NGFMPN-SYTFVSLFGSCAK---------TGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARN 143 (523)
Q Consensus 75 ~~~m~~-~~~~p~-~~~~~~ll~~~~~---------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 143 (523)
|+.... .|..|+ ...|...+....+ .|+++.|..+|++.++.........|..........|. ..+..
T Consensus 107 ~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~~~~~~~~~e~~~~~-~~~~~ 185 (530)
T 2ooe_A 107 YDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQLWRDYNKYEEGINI-HLAKK 185 (530)
T ss_dssp HHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHHHHHHHHHHHHHHCH-HHHHH
T ss_pred HHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHhhch-hHHHH
Confidence 777665 355544 4566666666544 68899999999999873111112334333322111111 11222
Q ss_pred HHhhcCCCCcchHHHHHHHHHhcCCHHHHHHHHhc----------CC---CCC--------hhHHHHHHHHHHhc----C
Q 038200 144 MFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDI----------MP---ERN--------VVSWNIMISGYSKS----G 198 (523)
Q Consensus 144 ~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~----------~~---~~~--------~~~~~~li~~~~~~----~ 198 (523)
++.. +.++++.|..++.. .. .|+ ...|...+...... +
T Consensus 186 ~l~~-----------------~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~ 248 (530)
T 2ooe_A 186 MIED-----------------RSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTE 248 (530)
T ss_dssp HHHT-----------------THHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCS
T ss_pred HHHH-----------------hhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCC
Confidence 2211 12334444433332 11 122 24555555433322 2
Q ss_pred Cc----hHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc-------cccHH-------HHHHHHHHHHHcCCCCchHHHHHH
Q 038200 199 NP----GCSLKLFREMMKSGFRGNDKTMASVLTACGR-------SARFN-------EGRSVHGYTVRTSLKPNIILDTAL 260 (523)
Q Consensus 199 ~~----~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~-------~~~~~-------~a~~~~~~~~~~~~~~~~~~~~~l 260 (523)
+. ..+..+|++.+.. .+.+...|...+..+.+ .|+++ +|..+|++..+.-.+.+...+..+
T Consensus 249 ~~~~~~~~a~~~y~~al~~-~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~ 327 (530)
T 2ooe_A 249 DQTLITKRVMFAYEQCLLV-LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAY 327 (530)
T ss_dssp CSHHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHH
Confidence 32 3777889888875 24466777777777764 68877 899999999863234468889999
Q ss_pred hhhhhhcCChHHHHHHHHhcCC--C-Ch-HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcCCCHHHHHHHHHH-H
Q 038200 261 IDLYSKCQKVEVAQRVFDSMAD--R-NL-VCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICA-C 335 (523)
Q Consensus 261 ~~~~~~~~~~~~a~~~~~~~~~--~-~~-~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~ll~~-~ 335 (523)
+..+.+.|++++|..+|+++.+ | +. ..|..++..+.+.|++++|.++|++..+.. +.+...|...... +
T Consensus 328 ~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~------~~~~~~~~~~a~~~~ 401 (530)
T 2ooe_A 328 ADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA------RTRHHVYVTAALMEY 401 (530)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT------TCCTHHHHHHHHHHH
T ss_pred HHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhcc------CCchHHHHHHHHHHH
Confidence 9999999999999999998754 3 33 589999999999999999999999999853 2223333332222 3
Q ss_pred hhcCcHHHHHHHHHHhhHhcCCCCChHHHHHHHHHHHcCCChHHHHHHHHhCCCCCCCCCch--HHHHHHHHHHHHhcCC
Q 038200 336 VRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFE--SIMWVSLLSLCRFQGA 413 (523)
Q Consensus 336 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~ 413 (523)
...|+.++|..+|++..+. .+.++..|..++..+.+.|+.++|..+|++...... ..|+ ...|...+......|+
T Consensus 402 ~~~~~~~~A~~~~e~al~~--~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~-~~~~~~~~lw~~~~~~e~~~G~ 478 (530)
T 2ooe_A 402 YCSKDKSVAFKIFELGLKK--YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGS-LPPEKSGEIWARFLAFESNIGD 478 (530)
T ss_dssp HHTCCHHHHHHHHHHHHHH--HTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCC-SCGGGCHHHHHHHHHHHHHSSC
T ss_pred HHcCChhHHHHHHHHHHHH--CCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccC-CCHHHHHHHHHHHHHHHHHcCC
Confidence 4689999999999999884 344688999999999999999999999999885321 2343 5578888888889999
Q ss_pred HHHHHHHHHHHhhcCCC
Q 038200 414 VAMVERLAKSFVDMDPQ 430 (523)
Q Consensus 414 ~~~a~~~~~~~~~~~p~ 430 (523)
.+.+..+.+++.+..|+
T Consensus 479 ~~~~~~~~~r~~~~~p~ 495 (530)
T 2ooe_A 479 LASILKVEKRRFTAFRE 495 (530)
T ss_dssp HHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHHHCch
Confidence 99999999999998874
No 23
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.82 E-value=3.7e-19 Score=169.11 Aligned_cols=264 Identities=11% Similarity=-0.047 Sum_probs=203.8
Q ss_pred ChhHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHcCCCCchHHHHHHhh
Q 038200 183 NVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALID 262 (523)
Q Consensus 183 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 262 (523)
+...|..+...+.+.|++++|..+|+++.+.. +.+..++..+..++...|++++|...|+++.+.. +.+..++..+..
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 141 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAV 141 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence 34557777777788888888888888877753 3466677777788888888888888888877764 335677777888
Q ss_pred hhhhcCChHHHHHHHHhcCCCC-------------hHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcCCCHHHHH
Q 038200 263 LYSKCQKVEVAQRVFDSMADRN-------------LVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFI 329 (523)
Q Consensus 263 ~~~~~~~~~~a~~~~~~~~~~~-------------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~ 329 (523)
+|...|++++|+..|+++.+.+ ...+..+...+...|++++|...|+++..... ..++..++.
T Consensus 142 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p----~~~~~~~~~ 217 (365)
T 4eqf_A 142 SYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNG----DMIDPDLQT 217 (365)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSC----SSCCHHHHH
T ss_pred HHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCc----CccCHHHHH
Confidence 8888888888888887765411 22344567889999999999999999998540 111578899
Q ss_pred HHHHHHhhcCcHHHHHHHHHHhhHhcCCCCChHHHHHHHHHHHcCCChHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHH
Q 038200 330 GVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCR 409 (523)
Q Consensus 330 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 409 (523)
.+...+...|++++|...|+++.+. .+.+..+|..+..+|...|++++|.+.++++.+. .+.+...+..+...+.
T Consensus 218 ~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~ 292 (365)
T 4eqf_A 218 GLGVLFHLSGEFNRAIDAFNAALTV--RPEDYSLWNRLGATLANGDRSEEAVEAYTRALEI---QPGFIRSRYNLGISCI 292 (365)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCCchHHHHHHHHHHH
Confidence 9999999999999999999999984 4556889999999999999999999999998853 2334788889999999
Q ss_pred hcCCHHHHHHHHHHHhhcCCC------------ChhhHHHHHHHHHhcCChhHHHHHHHH
Q 038200 410 FQGAVAMVERLAKSFVDMDPQ------------DFSRYQFLLNVYAVAGQWEDVARVREL 457 (523)
Q Consensus 410 ~~g~~~~a~~~~~~~~~~~p~------------~~~~~~~l~~~~~~~g~~~~A~~~~~~ 457 (523)
..|++++|...++++.++.|+ +..++..++.++...|+.+.+..+.++
T Consensus 293 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 293 NLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 999999999999999998765 367899999999999999988877653
No 24
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.82 E-value=3.2e-16 Score=162.58 Aligned_cols=381 Identities=12% Similarity=0.072 Sum_probs=279.5
Q ss_pred CChhHHHHHHHHhhccCCchhHHHHhccCC-CCC-----cccHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCcccHHH
Q 038200 19 NNSFWTINLLKHSADFGSPDYTVLVFKCIN-NPG-----TFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVS 92 (523)
Q Consensus 19 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-----~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ 92 (523)
.+|.--...+..|...|.+.+|+++++++. .++ ....+.++....+. +..+..+..+..... ....
T Consensus 983 ~~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~-------d~~e 1054 (1630)
T 1xi4_A 983 QDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNY-------DAPD 1054 (1630)
T ss_pred cCHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhc-------cHHH
Confidence 455555666777777888888888887765 222 23455566666665 445555555544421 1334
Q ss_pred HHHHHHccCCchHHHHHHHHHHHhCCCCCchHHHHHHHHHHccCChHHHHHHHhhcCCCCcchHHHHHHHHHhcCCHHHH
Q 038200 93 LFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAA 172 (523)
Q Consensus 93 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a 172 (523)
+...|...|.+++|..+|++.. -.....+.++ -..+++++|.++.++. .+..+|..+..++...|++++|
T Consensus 1055 IA~Iai~lglyEEAf~IYkKa~-----~~~~A~~VLi---e~i~nldrAiE~Aerv--n~p~vWsqLAKAql~~G~~kEA 1124 (1630)
T 1xi4_A 1055 IANIAISNELFEEAFAIFRKFD-----VNTSAVQVLI---EHIGNLDRAYEFAERC--NEPAVWSQLAKAQLQKGMVKEA 1124 (1630)
T ss_pred HHHHHHhCCCHHHHHHHHHHcC-----CHHHHHHHHH---HHHhhHHHHHHHHHhc--CCHHHHHHHHHHHHhCCCHHHH
Confidence 6677778888888888888751 1122223332 2677888888888876 3467788899999999999999
Q ss_pred HHHHhcCCCCChhHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHcCCCC
Q 038200 173 HELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKP 252 (523)
Q Consensus 173 ~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 252 (523)
+..|.+. .|...|..++.++.+.|++++|.++|....+.. ++....+.++.+|++.++++....+. + .+
T Consensus 1125 IdsYiKA--dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI----~---~~ 1193 (1630)
T 1xi4_A 1125 IDSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI----N---GP 1193 (1630)
T ss_pred HHHHHhc--CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH----h---CC
Confidence 9999775 567788889999999999999999998877754 33333445888888888888644442 2 34
Q ss_pred chHHHHHHhhhhhhcCChHHHHHHHHhcCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcCCCHHHHHHHH
Q 038200 253 NIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVI 332 (523)
Q Consensus 253 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~ll 332 (523)
+...+..+...|...|++++|..+|..+ ..|..+...|++.|++++|.+.+++. .+..+|..+-
T Consensus 1194 n~ad~~~iGd~le~eg~YeeA~~~Y~kA-----~ny~rLA~tLvkLge~q~AIEaarKA-----------~n~~aWkev~ 1257 (1630)
T 1xi4_A 1194 NNAHIQQVGDRCYDEKMYDAAKLLYNNV-----SNFGRLASTLVHLGEYQAAVDGARKA-----------NSTRTWKEVC 1257 (1630)
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHhh-----hHHHHHHHHHHHhCCHHHHHHHHHHh-----------CCHHHHHHHH
Confidence 5566667889999999999999999985 48999999999999999999999865 3456888888
Q ss_pred HHHhhcCcHHHHHHHHHHhhHhcCCCCChHHHHHHHHHHHcCCChHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHH--h
Q 038200 333 CACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCR--F 410 (523)
Q Consensus 333 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~ 410 (523)
.+|...|++..|......+. .++..+..++..|.+.|.+++|+.+++...... +-....|.-+...+. +
T Consensus 1258 ~acve~~Ef~LA~~cgl~Ii------v~~deLeeli~yYe~~G~feEAI~LlE~aL~Le---raH~gmftELaiLyaKy~ 1328 (1630)
T 1xi4_A 1258 FACVDGKEFRLAQMCGLHIV------VHADELEELINYYQDRGYFEELITMLEAALGLE---RAHMGMFTELAILYSKFK 1328 (1630)
T ss_pred HHHhhhhHHHHHHHHHHhhh------cCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC---hhHhHHHHHHHHHHHhCC
Confidence 89999999988888666433 367788899999999999999999999887421 234455555555554 4
Q ss_pred cCCHHHHHHHHHHHhhcCC-----CChhhHHHHHHHHHhcCChhHHHH
Q 038200 411 QGAVAMVERLAKSFVDMDP-----QDFSRYQFLLNVYAVAGQWEDVAR 453 (523)
Q Consensus 411 ~g~~~~a~~~~~~~~~~~p-----~~~~~~~~l~~~~~~~g~~~~A~~ 453 (523)
.++..++.+.|..-..+.| .+...|..+...|.+.|+++.|..
T Consensus 1329 peklmEhlk~f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~ 1376 (1630)
T 1xi4_A 1329 PQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 1376 (1630)
T ss_pred HHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHHH
Confidence 4667777788877666655 577789999999999999999983
No 25
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.81 E-value=2.6e-17 Score=150.22 Aligned_cols=273 Identities=12% Similarity=0.058 Sum_probs=215.8
Q ss_pred HHHHhcCCHHHHHHHHhcCCCCC----hhHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHH
Q 038200 161 SGHVRSGDMSAAHELFDIMPERN----VVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFN 236 (523)
Q Consensus 161 ~~~~~~~~~~~a~~~~~~~~~~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~ 236 (523)
+-....|++..|+..++.....+ ......+..+|...|+++.|+..++. .-+|+..++..+...+...++.+
T Consensus 7 ~~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~~~~ 82 (291)
T 3mkr_A 7 KNAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHSRRD 82 (291)
T ss_dssp HHHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCSTTHH
T ss_pred HHHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCCcHH
Confidence 33456788888888888766533 23445677899999999999876654 23567778888889999999999
Q ss_pred HHHHHHHHHHHcCCCC-chHHHHHHhhhhhhcCChHHHHHHHHhcCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 038200 237 EGRSVHGYTVRTSLKP-NIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGT 315 (523)
Q Consensus 237 ~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 315 (523)
+|.+.++++...+..| +...+..+..++...|++++|++.+++ ..+...+..++..|.+.|++++|.+.|+++.+.
T Consensus 83 ~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~--~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~- 159 (291)
T 3mkr_A 83 AIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ--GDSLECMAMTVQILLKLDRLDLARKELKKMQDQ- 159 (291)
T ss_dssp HHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT--CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-
Confidence 9999999998876444 566777788999999999999999998 567889999999999999999999999999984
Q ss_pred CCCCCcCCCHHHH---HHHHHHHhhcCcHHHHHHHHHHhhHhcCCCCChHHHHHHHHHHHcCCChHHHHHHHHhCCCCCC
Q 038200 316 VAGGSISPDEITF---IGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDND 392 (523)
Q Consensus 316 ~~~~~~~p~~~~~---~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 392 (523)
.|+.... ...+..+...|++++|..+|+++.+. .+.++..++.+..++.+.|++++|.+.++++.+.
T Consensus 160 ------~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~-- 229 (291)
T 3mkr_A 160 ------DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK--CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDK-- 229 (291)
T ss_dssp ------CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--
T ss_pred ------CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--
Confidence 4664322 22334445569999999999999984 5668899999999999999999999999998864
Q ss_pred CCCchHHHHHHHHHHHHhcCCHHH-HHHHHHHHhhcCCCChhhHHHHHHHHHhcCChhHHHHHH
Q 038200 393 NMSFESIMWVSLLSLCRFQGAVAM-VERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVR 455 (523)
Q Consensus 393 ~~~~~~~~~~~l~~~~~~~g~~~~-a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 455 (523)
.+.+..++..++..+...|+.++ +.++++++.+.+|+++.+. ....+.+.++++..-|
T Consensus 230 -~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~~----d~~~~~~~fd~~~~~~ 288 (291)
T 3mkr_A 230 -DSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIK----EYRAKENDFDRLVLQY 288 (291)
T ss_dssp -CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHH----HHHHHHHHHHHHHHHH
T ss_pred -CCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChHHH----HHHHHHHHHHHHHHHc
Confidence 23357788888888999999865 6799999999999887544 3455556666655443
No 26
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.79 E-value=6.1e-18 Score=157.83 Aligned_cols=260 Identities=8% Similarity=-0.067 Sum_probs=184.4
Q ss_pred HHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHcCCCCchHHHHHHhhhhh
Q 038200 186 SWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYS 265 (523)
Q Consensus 186 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 265 (523)
.+..+...+...|++++|..+|+++.+.. +.+...+..+..++...|++++|...++++.+.. +.+..++..+...|.
T Consensus 23 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~ 100 (327)
T 3cv0_A 23 NPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHT 100 (327)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHHH
Confidence 34444555555555555555555555432 2244455555555555555555555555555543 224445555555555
Q ss_pred hcCChHHHHHHHHhcCC--C-ChHHHHH-------------H-HH-HHHhcCChHHHHHHHHHHHhCCCCCCCcCCCHHH
Q 038200 266 KCQKVEVAQRVFDSMAD--R-NLVCWNA-------------M-IL-GHCIHGKPEEGIKLFTALVNGTVAGGSISPDEIT 327 (523)
Q Consensus 266 ~~~~~~~a~~~~~~~~~--~-~~~~~~~-------------l-i~-~~~~~g~~~~a~~~~~~m~~~~~~~~~~~p~~~~ 327 (523)
..|++++|...++++.+ | +...+.. + .. .+...|++++|...++++.... +.+...
T Consensus 101 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~------~~~~~~ 174 (327)
T 3cv0_A 101 NEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN------PNDAQL 174 (327)
T ss_dssp HTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS------TTCHHH
T ss_pred HcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC------CCCHHH
Confidence 55555555555555432 1 1111111 1 22 3677889999999999998854 346778
Q ss_pred HHHHHHHHhhcCcHHHHHHHHHHhhHhcCCCCChHHHHHHHHHHHcCCChHHHHHHHHhCCCCCCCCCchHHHHHHHHHH
Q 038200 328 FIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSL 407 (523)
Q Consensus 328 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~ 407 (523)
+..+...+...|++++|...++++.+. .+.+...+..+...+...|++++|.+.++++.+. .+.+...+..+...
T Consensus 175 ~~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~---~~~~~~~~~~l~~~ 249 (327)
T 3cv0_A 175 HASLGVLYNLSNNYDSAAANLRRAVEL--RPDDAQLWNKLGATLANGNRPQEALDAYNRALDI---NPGYVRVMYNMAVS 249 (327)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc---CCCCHHHHHHHHHH
Confidence 889999999999999999999999884 3446788999999999999999999999998753 23457788888899
Q ss_pred HHhcCCHHHHHHHHHHHhhcCCC------------ChhhHHHHHHHHHhcCChhHHHHHHHHH
Q 038200 408 CRFQGAVAMVERLAKSFVDMDPQ------------DFSRYQFLLNVYAVAGQWEDVARVRELM 458 (523)
Q Consensus 408 ~~~~g~~~~a~~~~~~~~~~~p~------------~~~~~~~l~~~~~~~g~~~~A~~~~~~m 458 (523)
+...|++++|...++++.+..|. ++.++..++.+|...|++++|..++++.
T Consensus 250 ~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 312 (327)
T 3cv0_A 250 YSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQN 312 (327)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCC
T ss_pred HHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 99999999999999999999998 6889999999999999999999988744
No 27
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.79 E-value=9.5e-18 Score=159.44 Aligned_cols=287 Identities=9% Similarity=0.004 Sum_probs=159.2
Q ss_pred CCCchHHHH-HHHHHHHCCC-CC--CcccHHHHHHHHHccCCchHHHHHHHHHHHhCCCCCchHHHHHHHHHHccCChHH
Q 038200 65 SCVPDQGVV-FYLQMIKNGF-MP--NSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDC 140 (523)
Q Consensus 65 ~~~~~~a~~-~~~~m~~~~~-~p--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 140 (523)
.|++++|++ .|++...... .| +...+..+...+...|++++|...++.+++..+. +..++..+..++.+.|++++
T Consensus 38 ~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~ 116 (368)
T 1fch_A 38 LSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPK-HMEAWQYLGTTQAENEQELL 116 (368)
T ss_dssp --------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTT-CHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCcCHHH
Confidence 466777776 6665443210 11 3445666777777777777777777777766433 55666666666666666666
Q ss_pred HHHHHhhcCCCCcchHHHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHH
Q 038200 141 ARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDK 220 (523)
Q Consensus 141 A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~ 220 (523)
|.+.|+++... ...+..++..+...+...|++++|...++++.+... .+..
T Consensus 117 A~~~~~~al~~----------------------------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~ 167 (368)
T 1fch_A 117 AISALRRCLEL----------------------------KPDNQTALMALAVSFTNESLQRQACEILRDWLRYTP-AYAH 167 (368)
T ss_dssp HHHHHHHHHHH----------------------------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTST-TTGG
T ss_pred HHHHHHHHHhc----------------------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-CcHH
Confidence 66666554210 012344555566666666666666666666665421 1111
Q ss_pred HHHH---------------HHHHHhccccHHHHHHHHHHHHHcCCCC-chHHHHHHhhhhhhcCChHHHHHHHHhcCC--
Q 038200 221 TMAS---------------VLTACGRSARFNEGRSVHGYTVRTSLKP-NIILDTALIDLYSKCQKVEVAQRVFDSMAD-- 282 (523)
Q Consensus 221 ~~~~---------------ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-- 282 (523)
.+.. .+..+...|++++|...++++.+..... +..++..+...|...|++++|+..|+++.+
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 247 (368)
T 1fch_A 168 LVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR 247 (368)
T ss_dssp GCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 1110 1222236677777777777776654221 355666666666666666666666666532
Q ss_pred -CChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhHhcCCC---
Q 038200 283 -RNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIK--- 358 (523)
Q Consensus 283 -~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~--- 358 (523)
.+..+|..+...+...|++++|...|+++.... +.+...+..+..++.+.|++++|...|+++.+...-.
T Consensus 248 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 321 (368)
T 1fch_A 248 PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQ------PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGP 321 (368)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC---
T ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCc
Confidence 345566666666666777777777776666632 2235566666666666677777776666665531000
Q ss_pred ------CChHHHHHHHHHHHcCCChHHHHHHHHhC
Q 038200 359 ------PNFAHYWCMANLYAGAELTEEAEEILRKM 387 (523)
Q Consensus 359 ------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 387 (523)
....+|..+..+|...|++++|..++++.
T Consensus 322 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 356 (368)
T 1fch_A 322 RGEGGAMSENIWSTLRLALSMLGQSDAYGAADARD 356 (368)
T ss_dssp ---CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTC
T ss_pred cccccchhhHHHHHHHHHHHHhCChHhHHHhHHHH
Confidence 01455666666666666666666665543
No 28
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.79 E-value=4.6e-17 Score=160.35 Aligned_cols=378 Identities=9% Similarity=-0.068 Sum_probs=198.5
Q ss_pred cccHHHHHHHHHhCCCchHHHHHHHHHHHC-----C--CCC-CcccHHHHHHHHHccCCchHHHHHHHHHHHhC------
Q 038200 52 TFCVNAVIKAYSNSCVPDQGVVFYLQMIKN-----G--FMP-NSYTFVSLFGSCAKTGCVERGGMCHGLALKNG------ 117 (523)
Q Consensus 52 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~-----~--~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~------ 117 (523)
...||.|...+...|++++|++.|++..+. + ..| ...+|+.+..++...|++++|...++++.+..
T Consensus 51 a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~ 130 (472)
T 4g1t_A 51 ATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSP 130 (472)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCS
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccc
Confidence 445777777777777777777777765431 1 122 23466677777777777777777777665421
Q ss_pred CCC-CchHHHHHHHHHHcc--CChHHHHHHHhhcC--CC-CcchHHHHHHH---HHhcCCHHHHHHHHhcCCC---CChh
Q 038200 118 VDF-ELPVMNSLINMYGCF--GAMDCARNMFVQMS--PR-DLISWNSIVSG---HVRSGDMSAAHELFDIMPE---RNVV 185 (523)
Q Consensus 118 ~~~-~~~~~~~l~~~~~~~--g~~~~A~~~~~~~~--~~-~~~~~~~ll~~---~~~~~~~~~a~~~~~~~~~---~~~~ 185 (523)
..+ ...++..+..++... +++++|++.|++.. .| +...+..+..+ +...++.++|++.+++..+ .+..
T Consensus 131 ~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~~ 210 (472)
T 4g1t_A 131 YRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQY 210 (472)
T ss_dssp SCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCHH
T ss_pred cchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcchH
Confidence 011 123444444333332 34566666666554 22 23333333222 2233444444444444322 2233
Q ss_pred HHHHHHHHHHh----cCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHcCCCCchHHHHHHh
Q 038200 186 SWNIMISGYSK----SGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALI 261 (523)
Q Consensus 186 ~~~~li~~~~~----~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 261 (523)
++..+...+.. .+++++|.+++++..... +.+...+..+...+...|++++|...++++.+.. +.+..++..+.
T Consensus 211 ~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg 288 (472)
T 4g1t_A 211 LKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI-PNNAYLHCQIG 288 (472)
T ss_dssp HHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CChHHHHHHHH
Confidence 33333333322 234455555555554432 2234444555555555555555555555555442 12333444444
Q ss_pred hhhhhcCChHHHHHHHHhcCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcCCCHHHHHHHHHHHhhcCcH
Q 038200 262 DLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELL 341 (523)
Q Consensus 262 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~ 341 (523)
.+|...+....+ . .. ..........+..+.|...+++..... +.+..++..+...+...|++
T Consensus 289 ~~y~~~~~~~~~-----~-~~------~~~~~~~~~~~~~~~A~~~~~~a~~~~------~~~~~~~~~lg~~~~~~~~~ 350 (472)
T 4g1t_A 289 CCYRAKVFQVMN-----L-RE------NGMYGKRKLLELIGHAVAHLKKADEAN------DNLFRVCSILASLHALADQY 350 (472)
T ss_dssp HHHHHHHHHHHH-----C-------------CHHHHHHHHHHHHHHHHHHHHHC------TTTCCCHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHhhh-----H-HH------HHHHHHHHHHhhHHHHHHHHHHHhhcC------CchhhhhhhHHHHHHHhccH
Confidence 333221100000 0 00 000000111234677888888888753 23455778888899999999
Q ss_pred HHHHHHHHHhhHhcCCCCCh--HHHHHHHH-HHHcCCChHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHhcCCHHHHH
Q 038200 342 TEGRKYFRQMIDFYKIKPNF--AHYWCMAN-LYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVE 418 (523)
Q Consensus 342 ~~a~~~~~~~~~~~~~~~~~--~~~~~l~~-~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 418 (523)
++|...|+++.+. ...+.. ..+..+.. .+...|++++|++.|++..+ +.|+..... +....+.
T Consensus 351 ~~A~~~~~kaL~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~----i~~~~~~~~---------~~~~~l~ 416 (472)
T 4g1t_A 351 EEAEYYFQKEFSK-ELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVK----INQKSREKE---------KMKDKLQ 416 (472)
T ss_dssp HHHHHHHHHHHHS-CCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH----SCCCCHHHH---------HHHHHHH
T ss_pred HHHHHHHHHHHhc-CCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh----cCcccHHHH---------HHHHHHH
Confidence 9999999998874 322221 12333333 24578999999999999875 455533222 2234556
Q ss_pred HHHHHHhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 038200 419 RLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRM 463 (523)
Q Consensus 419 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 463 (523)
.++++.++.+|+++.+|..|+.+|...|++++|++.|++..+.+.
T Consensus 417 ~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~ 461 (472)
T 4g1t_A 417 KIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGS 461 (472)
T ss_dssp HHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC--------------
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 778888899999999999999999999999999999999887653
No 29
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.77 E-value=1e-16 Score=149.37 Aligned_cols=265 Identities=14% Similarity=0.052 Sum_probs=139.4
Q ss_pred CChhHHHHHHHHhhccCCchhHHHHhccCCCCCcccHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCcccHHHHHHHHH
Q 038200 19 NNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCA 98 (523)
Q Consensus 19 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~ 98 (523)
+++.+|..|..++.+.|++++|++.|.+. +|...|..++..+...|++++|+..++..++. .+++.+.+.++.+|.
T Consensus 30 ~~~~vWs~La~A~l~~g~~~eAIdsfika--~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~--~~~~~i~~~Li~~Y~ 105 (449)
T 1b89_A 30 NEPAVWSQLAKAQLQKGMVKEAIDSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQMARKK--ARESYVETELIFALA 105 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CChHHHHHHHHHHHHcCCHHHHHHHHHcC--CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CccchhHHHHHHHHH
Confidence 35679999999999999999999999764 67779999999999999999999987777664 566788999999999
Q ss_pred ccCCchHHHHHHHHHHHhCCCCCchHHHHHHHHHHccCChHHHHHHHhhcCCCCcchHHHHHHHHHhcCCHHHHHHHHhc
Q 038200 99 KTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDI 178 (523)
Q Consensus 99 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 178 (523)
+.|++.++.++++ .|+..+|+.+...|...|.+++|...|..+ ..|..+..++.+.|++++|.+.+.+
T Consensus 106 Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a-----~n~~~LA~~L~~Lg~yq~AVea~~K 173 (449)
T 1b89_A 106 KTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV-----SNFGRLASTLVHLGEYQAAVDGARK 173 (449)
T ss_dssp ---CHHHHTTTTT-------CC----------------CTTTHHHHHHHT-----TCHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh-----hhHHHHHHHHHHhccHHHHHHHHHH
Confidence 9999999988875 367789999999999999999999999988 5899999999999999999999999
Q ss_pred CCCCChhHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHcCCCCchHHHH
Q 038200 179 MPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDT 258 (523)
Q Consensus 179 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 258 (523)
+. ++.+|..++.+|...|+++.|...... +...+.....++..|.+.|++++|..+++...... +....+|+
T Consensus 174 A~--~~~~Wk~v~~aCv~~~ef~lA~~~~l~-----L~~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ft 245 (449)
T 1b89_A 174 AN--STRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFT 245 (449)
T ss_dssp HT--CHHHHHHHHHHHHHTTCHHHHHHTTTT-----TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHH
T ss_pred cC--CchhHHHHHHHHHHcCcHHHHHHHHHH-----HHhCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHH
Confidence 94 899999999999999999999665543 22344445578899999999999999999998765 45678888
Q ss_pred HHhhhhhhc--CChHHHHHHHHhcCC--------CChHHHHHHHHHHHhcCChHHHHHH
Q 038200 259 ALIDLYSKC--QKVEVAQRVFDSMAD--------RNLVCWNAMILGHCIHGKPEEGIKL 307 (523)
Q Consensus 259 ~l~~~~~~~--~~~~~a~~~~~~~~~--------~~~~~~~~li~~~~~~g~~~~a~~~ 307 (523)
-|.-+|++- +++.+.++.|..-.. .+...|..+.-.|...++++.|...
T Consensus 246 el~il~~ky~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~t 304 (449)
T 1b89_A 246 ELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIIT 304 (449)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHH
Confidence 887777764 455666666654433 2456799999999999999998774
No 30
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.77 E-value=3.4e-17 Score=155.49 Aligned_cols=233 Identities=6% Similarity=-0.091 Sum_probs=197.6
Q ss_pred CHHHHHHHHHHHhccccHHHHHHHHHHHHHcCCCCchHHHHHHhhhhhhcCChHHHHHHHHhcCC---CChHHHHHHHHH
Q 038200 218 NDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMAD---RNLVCWNAMILG 294 (523)
Q Consensus 218 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~ 294 (523)
+...+..+...+.+.|++++|..+|+++.+.. +.+..++..+..+|...|++++|+..|+++.+ .+..+|..+...
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 142 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVS 142 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 44568888999999999999999999999875 44788999999999999999999999998854 467899999999
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCCCcCCCH-----------HHHHHHHHHHhhcCcHHHHHHHHHHhhHhcCCCCChHH
Q 038200 295 HCIHGKPEEGIKLFTALVNGTVAGGSISPDE-----------ITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAH 363 (523)
Q Consensus 295 ~~~~g~~~~a~~~~~~m~~~~~~~~~~~p~~-----------~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 363 (523)
|...|++++|...|+++.+.. |+. ..+..+...+...|++++|..+++++.+.....++..+
T Consensus 143 ~~~~g~~~~A~~~~~~al~~~-------p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 215 (365)
T 4eqf_A 143 YTNTSHQQDACEALKNWIKQN-------PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDL 215 (365)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-------HHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHH
T ss_pred HHccccHHHHHHHHHHHHHhC-------ccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHH
Confidence 999999999999999998843 442 22334577889999999999999999985222226889
Q ss_pred HHHHHHHHHcCCChHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhhHHHHHHHHH
Q 038200 364 YWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYA 443 (523)
Q Consensus 364 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 443 (523)
+..+...|...|++++|.+.++++.+. .+.+..++..+..++...|++++|...++++++..|+++.++..++.+|.
T Consensus 216 ~~~l~~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 292 (365)
T 4eqf_A 216 QTGLGVLFHLSGEFNRAIDAFNAALTV---RPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCI 292 (365)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHH
Confidence 999999999999999999999998864 24457889999999999999999999999999999999999999999999
Q ss_pred hcCChhHHHHHHHHHHhC
Q 038200 444 VAGQWEDVARVRELMKKR 461 (523)
Q Consensus 444 ~~g~~~~A~~~~~~m~~~ 461 (523)
+.|++++|...+++..+.
T Consensus 293 ~~g~~~~A~~~~~~al~~ 310 (365)
T 4eqf_A 293 NLGAYREAVSNFLTALSL 310 (365)
T ss_dssp HHTCCHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHh
Confidence 999999999999999775
No 31
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.77 E-value=5e-17 Score=148.30 Aligned_cols=249 Identities=12% Similarity=0.058 Sum_probs=204.7
Q ss_pred HHHHHhcCCchHHHHHHHHHHHCCCCCCH--HHHHHHHHHHhccccHHHHHHHHHHHHHcCCCCchHHHHHHhhhhhhcC
Q 038200 191 ISGYSKSGNPGCSLKLFREMMKSGFRGND--KTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQ 268 (523)
Q Consensus 191 i~~~~~~~~~~~a~~~~~~m~~~~~~p~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 268 (523)
++-....|++..|+..++..... .|+. .....+.++|...|+++.|...++. ..+|+..++..+...+...+
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~~--~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~ 79 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKPS--SPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHS 79 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCCC--SHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCST
T ss_pred HHHHHHHHHHHHHHHHHHhcccC--CchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCC
Confidence 34556789999999988876543 3443 3556778999999999999986654 24567888899999999999
Q ss_pred ChHHHHHHHHhcC----CC-ChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcCCCHHHHHHHHHHHhhcCcHHH
Q 038200 269 KVEVAQRVFDSMA----DR-NLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTE 343 (523)
Q Consensus 269 ~~~~a~~~~~~~~----~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~ 343 (523)
+.++|++.++++. .| +...+..+...+...|++++|++.+++ + .+...+..++..+.+.|++++
T Consensus 80 ~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~----~-------~~~~~~~~l~~~~~~~g~~~~ 148 (291)
T 3mkr_A 80 RRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ----G-------DSLECMAMTVQILLKLDRLDL 148 (291)
T ss_dssp THHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT----C-------CSHHHHHHHHHHHHHTTCHHH
T ss_pred cHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC----C-------CCHHHHHHHHHHHHHCCCHHH
Confidence 9999999999863 24 566778888999999999999999986 2 567788899999999999999
Q ss_pred HHHHHHHhhHhcCCCCChHH---HHHHHHHHHcCCChHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHhcCCHHHHHHH
Q 038200 344 GRKYFRQMIDFYKIKPNFAH---YWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERL 420 (523)
Q Consensus 344 a~~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 420 (523)
|.+.|+++.+. .|+... ...++..+...|++++|..+|+++.+. .+.+...++.+..++...|++++|...
T Consensus 149 A~~~l~~~~~~---~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~---~p~~~~~~~~la~~~~~~g~~~eA~~~ 222 (291)
T 3mkr_A 149 ARKELKKMQDQ---DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK---CSPTLLLLNGQAACHMAQGRWEAAEGV 222 (291)
T ss_dssp HHHHHHHHHHH---CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH---SCCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHhh---CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHcCCHHHHHHH
Confidence 99999999985 354321 123445556679999999999999864 456788899999999999999999999
Q ss_pred HHHHhhcCCCChhhHHHHHHHHHhcCChhH-HHHHHHHHHhCC
Q 038200 421 AKSFVDMDPQDFSRYQFLLNVYAVAGQWED-VARVRELMKKRR 462 (523)
Q Consensus 421 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~-A~~~~~~m~~~~ 462 (523)
++++++.+|+++.++..++.++...|++++ +.++++++.+..
T Consensus 223 l~~al~~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~ 265 (291)
T 3mkr_A 223 LQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAH 265 (291)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC
Confidence 999999999999999999999999999986 578889887653
No 32
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.76 E-value=1.3e-14 Score=150.76 Aligned_cols=398 Identities=10% Similarity=0.061 Sum_probs=294.2
Q ss_pred HhHHHHHHHHhC--CCCCChhHHHHHHHHhhccCCchhHHHHhccCCCCCcccHHHHHHHHHhCCCchHHHHHHHHHHHC
Q 038200 4 LLQIQAHLITSG--LFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKN 81 (523)
Q Consensus 4 ~~~i~~~~~~~g--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~ 81 (523)
+..+.+.++-.+ .. .+....+.|+....+. +..+..+..+++..-+ ...+...+...|.+++|..+|++...
T Consensus 1004 aieLLEKivl~~s~fs-~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~d---~~eIA~Iai~lglyEEAf~IYkKa~~- 1077 (1630)
T 1xi4_A 1004 LIELLEKIVLDNSVFS-EHRNLQNLLILTAIKA-DRTRVMEYINRLDNYD---APDIANIAISNELFEEAFAIFRKFDV- 1077 (1630)
T ss_pred HHHHHHHHHcCCCccc-ccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhcc---HHHHHHHHHhCCCHHHHHHHHHHcCC-
Confidence 445555555221 12 3556777777666665 4566666665554333 45578888999999999999998631
Q ss_pred CCCCCcccHHHHHHHHHccCCchHHHHHHHHHHHhCCCCCchHHHHHHHHHHccCChHHHHHHHhhcCCCCcchHHHHHH
Q 038200 82 GFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVS 161 (523)
Q Consensus 82 ~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~ 161 (523)
.....+.++. ..+++++|.++.++. -+..+|..+..++...|++++|.+.|.+. .|...|..++.
T Consensus 1078 ----~~~A~~VLie---~i~nldrAiE~Aerv------n~p~vWsqLAKAql~~G~~kEAIdsYiKA--dD~say~eVa~ 1142 (1630)
T 1xi4_A 1078 ----NTSAVQVLIE---HIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAIDSYIKA--DDPSSYMEVVQ 1142 (1630)
T ss_pred ----HHHHHHHHHH---HHhhHHHHHHHHHhc------CCHHHHHHHHHHHHhCCCHHHHHHHHHhc--CChHHHHHHHH
Confidence 1112233333 668899999998855 25789999999999999999999999775 67888899999
Q ss_pred HHHhcCCHHHHHHHHhcCCC--CChhHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHH
Q 038200 162 GHVRSGDMSAAHELFDIMPE--RNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGR 239 (523)
Q Consensus 162 ~~~~~~~~~~a~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~ 239 (523)
.+.+.|++++|.+.|....+ ++....+.++.+|++.++++....+. + .++...|..+...|...|++++|.
T Consensus 1143 ~~~~lGkyEEAIeyL~mArk~~~e~~Idt~LafaYAKl~rleele~fI----~---~~n~ad~~~iGd~le~eg~YeeA~ 1215 (1630)
T 1xi4_A 1143 AANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNRLAELEEFI----N---GPNNAHIQQVGDRCYDEKMYDAAK 1215 (1630)
T ss_pred HHHHcCCHHHHHHHHHHHHhhcccccccHHHHHHHHhhcCHHHHHHHH----h---CCCHHHHHHHHHHHHhcCCHHHHH
Confidence 99999999999999987654 34344456899999999888544332 2 456677778999999999999999
Q ss_pred HHHHHHHHcCCCCchHHHHHHhhhhhhcCChHHHHHHHHhcCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC
Q 038200 240 SVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGG 319 (523)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~ 319 (523)
.+|..+ ..|..+...|.+.|+++.|.+.+++. .+..+|..+..+|...|++..|......
T Consensus 1216 ~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA--~n~~aWkev~~acve~~Ef~LA~~cgl~--------- 1275 (1630)
T 1xi4_A 1216 LLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA--NSTRTWKEVCFACVDGKEFRLAQMCGLH--------- 1275 (1630)
T ss_pred HHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh--CCHHHHHHHHHHHhhhhHHHHHHHHHHh---------
Confidence 999874 47889999999999999999999987 4678999999999999999999887654
Q ss_pred CcCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhHhcCCCCChHHHHHHHHHHHc--CCChHHHHHHHHhCCCCCCCCCc-
Q 038200 320 SISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAG--AELTEEAEEILRKMPEDNDNMSF- 396 (523)
Q Consensus 320 ~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~g~~~~A~~~~~~~~~~~~~~~~- 396 (523)
+..++..+..++..|.+.|.+++|+.+++..... -+-....|+-|..+|++ -++..++.+.|..-.. ++|
T Consensus 1276 -Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~L--eraH~gmftELaiLyaKy~peklmEhlk~f~~rin----i~k~ 1348 (1630)
T 1xi4_A 1276 -IVVHADELEELINYYQDRGYFEELITMLEAALGL--ERAHMGMFTELAILYSKFKPQKMREHLELFWSRVN----IPKV 1348 (1630)
T ss_pred -hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc--ChhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhcc----cchH
Confidence 2345556778999999999999999999888753 13345667667666665 4566677777765542 333
Q ss_pred -----hHHHHHHHHHHHHhcCCHHHHHHHHHHHhh------------cCCCChhhHHHHHHHHHhcC-------------
Q 038200 397 -----ESIMWVSLLSLCRFQGAVAMVERLAKSFVD------------MDPQDFSRYQFLLNVYAVAG------------- 446 (523)
Q Consensus 397 -----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~------------~~p~~~~~~~~l~~~~~~~g------------- 446 (523)
+...|..+...|.+.|+++.|....-.-.. ..+.+++.|...+..|...+
T Consensus 1349 ~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~h~~~a~~~~~Fk~~i~kv~n~elyykai~Fyl~~~P~~lndLl~~l~~ 1428 (1630)
T 1xi4_A 1349 LRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYLEFKPLLLNDLLMVLSP 1428 (1630)
T ss_pred hHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhccHhhhhhHHHHHHhcccccHHHHHHHHHHHHhhChHHHHHHHHHhhh
Confidence 467788888889999999988833222111 14557788888888887766
Q ss_pred --ChhHHHHHHH
Q 038200 447 --QWEDVARVRE 456 (523)
Q Consensus 447 --~~~~A~~~~~ 456 (523)
+.+.+.++|.
T Consensus 1429 rlD~~R~V~l~~ 1440 (1630)
T 1xi4_A 1429 RLDHTRAVNYFS 1440 (1630)
T ss_pred cCChHHHHHHHH
Confidence 6777776666
No 33
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.74 E-value=4.7e-17 Score=151.77 Aligned_cols=263 Identities=9% Similarity=0.022 Sum_probs=156.2
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHhcCCC---CChhHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc
Q 038200 155 SWNSIVSGHVRSGDMSAAHELFDIMPE---RNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGR 231 (523)
Q Consensus 155 ~~~~ll~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 231 (523)
.+..+...+...|++++|..+|+++.+ .+...|..+..++...|++++|...++++.+.. +.+..++..+..++..
T Consensus 23 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~ 101 (327)
T 3cv0_A 23 NPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTN 101 (327)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHHHH
Confidence 334444444455555555555554432 244555555666666666666666666665542 2344555556666666
Q ss_pred cccHHHHHHHHHHHHHcCCCCchHHHHHH--------------hh-hhhhcCChHHHHHHHHhcCC---CChHHHHHHHH
Q 038200 232 SARFNEGRSVHGYTVRTSLKPNIILDTAL--------------ID-LYSKCQKVEVAQRVFDSMAD---RNLVCWNAMIL 293 (523)
Q Consensus 232 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l--------------~~-~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~ 293 (523)
.|++++|...++.+.+.... +...+..+ .. .+...|++++|...++++.+ .+...+..+..
T Consensus 102 ~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~ 180 (327)
T 3cv0_A 102 EHNANAALASLRAWLLSQPQ-YEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGV 180 (327)
T ss_dssp TTCHHHHHHHHHHHHHTSTT-TTTC--------------------CCTTSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCc-cHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHH
Confidence 66666666666666554321 22222222 22 35566667777777766533 34566777777
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCCCCcCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhHhcCCCCChHHHHHHHHHHHc
Q 038200 294 GHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAG 373 (523)
Q Consensus 294 ~~~~~g~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 373 (523)
.|...|++++|...++++.... +.+..++..+...+...|++++|...++++.+. .+.+...+..+...|..
T Consensus 181 ~~~~~~~~~~A~~~~~~~~~~~------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~l~~~~~~ 252 (327)
T 3cv0_A 181 LYNLSNNYDSAAANLRRAVELR------PDDAQLWNKLGATLANGNRPQEALDAYNRALDI--NPGYVRVMYNMAVSYSN 252 (327)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHH
T ss_pred HHHHhccHHHHHHHHHHHHHhC------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHH
Confidence 7777777777777777777643 234566777777777777777777777777663 23356677777777777
Q ss_pred CCChHHHHHHHHhCCCCCCC---------CCchHHHHHHHHHHHHhcCCHHHHHHHHHHHhhc
Q 038200 374 AELTEEAEEILRKMPEDNDN---------MSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDM 427 (523)
Q Consensus 374 ~g~~~~A~~~~~~~~~~~~~---------~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 427 (523)
.|++++|.+.++++.+.... ...+...+..+..++...|+.++|..+++++++.
T Consensus 253 ~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 315 (327)
T 3cv0_A 253 MSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNVEP 315 (327)
T ss_dssp TTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCSHH
T ss_pred hccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 77777777777776532110 0003566667777777777777777777665553
No 34
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.73 E-value=8.2e-16 Score=151.39 Aligned_cols=381 Identities=8% Similarity=-0.031 Sum_probs=236.4
Q ss_pred CChhHHHHHHHHhhccCCchhHHHHhccCC-----------C-CCcccHHHHHHHHHhCCCchHHHHHHHHHHHC-----
Q 038200 19 NNSFWTINLLKHSADFGSPDYTVLVFKCIN-----------N-PGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKN----- 81 (523)
Q Consensus 19 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----------~-~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~----- 81 (523)
.....|+.|..++...|++++|++.|++.. . ....+|+.+..+|...|++++|...+++..+.
T Consensus 49 ~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~ 128 (472)
T 4g1t_A 49 FKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFS 128 (472)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC
T ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcc
Confidence 445678999999999999999999997531 1 24567999999999999999999999987642
Q ss_pred C-CCC-CcccHHHHHHHHHc--cCCchHHHHHHHHHHHhCCCCCchHHHHHHHHH---HccCChHHHHHHHhhcC---CC
Q 038200 82 G-FMP-NSYTFVSLFGSCAK--TGCVERGGMCHGLALKNGVDFELPVMNSLINMY---GCFGAMDCARNMFVQMS---PR 151 (523)
Q Consensus 82 ~-~~p-~~~~~~~ll~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~g~~~~A~~~~~~~~---~~ 151 (523)
+ ..+ ...++.....++.. .+++++|+..|++.++..+. +...+..+..++ ...++.++|++.+++.. +.
T Consensus 129 ~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~-~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~ 207 (472)
T 4g1t_A 129 SPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPK-NPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPD 207 (472)
T ss_dssp CSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSS
T ss_pred cccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCc
Confidence 1 111 23355555555544 45789999999999998644 566666665553 45677788888887764 34
Q ss_pred CcchHHHHHHHHHh----cCCHHHHHHHHhcCCC---CChhHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHHHHHH
Q 038200 152 DLISWNSIVSGHVR----SGDMSAAHELFDIMPE---RNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMAS 224 (523)
Q Consensus 152 ~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ 224 (523)
+...+..+...+.. .+++++|.+++++... .+..++..+...|...|++++|...+++..+.. +-+..++..
T Consensus 208 ~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~ 286 (472)
T 4g1t_A 208 NQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI-PNNAYLHCQ 286 (472)
T ss_dssp CHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHH
T ss_pred chHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CChHHHHHH
Confidence 55666666555544 4678899999988653 467789999999999999999999999998853 335566666
Q ss_pred HHHHHhccccHHHHHHHHHHHHHcCCCCchHHHHHHhhhhhhcCChHHHHHHHHhcCC---CChHHHHHHHHHHHhcCCh
Q 038200 225 VLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMAD---RNLVCWNAMILGHCIHGKP 301 (523)
Q Consensus 225 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~ 301 (523)
+..+|...+....+ .. ...........+.++.|...|++..+ .+..++..+...|...|++
T Consensus 287 lg~~y~~~~~~~~~---------~~-------~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~ 350 (472)
T 4g1t_A 287 IGCCYRAKVFQVMN---------LR-------ENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQY 350 (472)
T ss_dssp HHHHHHHHHHHHHH---------C-------------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHhhh---------HH-------HHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccH
Confidence 66665432211110 00 00111111122335667777776533 3456788888999999999
Q ss_pred HHHHHHHHHHHhCCCCCCCcCCCHH----HHHHHHH-HHhhcCcHHHHHHHHHHhhHhcCCCCChHHHHHHHHHHHcCCC
Q 038200 302 EEGIKLFTALVNGTVAGGSISPDEI----TFIGVIC-ACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAEL 376 (523)
Q Consensus 302 ~~a~~~~~~m~~~~~~~~~~~p~~~----~~~~ll~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 376 (523)
++|+..|++..... |+.. .+..+.. .....|+.++|+..|++..+ +.|+.......
T Consensus 351 ~~A~~~~~kaL~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~---i~~~~~~~~~~--------- 411 (472)
T 4g1t_A 351 EEAEYYFQKEFSKE-------LTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVK---INQKSREKEKM--------- 411 (472)
T ss_dssp HHHHHHHHHHHHSC-------CCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH---SCCCCHHHHHH---------
T ss_pred HHHHHHHHHHHhcC-------CCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCcccHHHHHH---------
Confidence 99999999988854 3322 2222322 23467899999999998876 34543332222
Q ss_pred hHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhhHHHHH
Q 038200 377 TEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLL 439 (523)
Q Consensus 377 ~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 439 (523)
...+.+++++.... .+.+..+|..+...+...|++++|.+.|+++++++|.+|.+..-++
T Consensus 412 ~~~l~~~~~~~l~~---~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~G 471 (472)
T 4g1t_A 412 KDKLQKIAKMRLSK---NGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWNG 471 (472)
T ss_dssp HHHHHHHHHHHHHH---CC-CTTHHHHHHHHHHHHHHCC------------------------
T ss_pred HHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcCC
Confidence 23334445544432 2445678888888999999999999999999999888777665543
No 35
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.72 E-value=9.7e-16 Score=137.52 Aligned_cols=228 Identities=6% Similarity=-0.065 Sum_probs=155.2
Q ss_pred HHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHcCCC--CchHHHHHHhhh
Q 038200 186 SWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLK--PNIILDTALIDL 263 (523)
Q Consensus 186 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~ 263 (523)
.|..+...+...|++++|..+|++..+.. .+...+..+..++...|++++|...++.+.+.... ++..
T Consensus 7 ~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~-------- 76 (258)
T 3uq3_A 7 KEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYK-------- 76 (258)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHH--------
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchH--------
Confidence 44455555555555555555555555543 44445555555555555555555555544432100 0000
Q ss_pred hhhcCChHHHHHHHHhcCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcCCCHHHHHHHHHHHhhcCcHHH
Q 038200 264 YSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTE 343 (523)
Q Consensus 264 ~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~ 343 (523)
....+|..+...|...|++++|...|+++... .|+. ..+...|++++
T Consensus 77 -------------------~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~-------~~~~-------~~~~~~~~~~~ 123 (258)
T 3uq3_A 77 -------------------VISKSFARIGNAYHKLGDLKKTIEYYQKSLTE-------HRTA-------DILTKLRNAEK 123 (258)
T ss_dssp -------------------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------CCCH-------HHHHHHHHHHH
T ss_pred -------------------HHHHHHHHHHHHHHHcccHHHHHHHHHHHHhc-------Cchh-------HHHHHHhHHHH
Confidence 00456677777888888888888888888773 4553 33555677888
Q ss_pred HHHHHHHhhHhcCCCCChHHHHHHHHHHHcCCChHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 038200 344 GRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKS 423 (523)
Q Consensus 344 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 423 (523)
|...++++.. ..+.+...+..+...+...|++++|.+.++++.+. .+.+...+..+...+...|++++|...+++
T Consensus 124 a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 198 (258)
T 3uq3_A 124 ELKKAEAEAY--VNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKR---APEDARGYSNRAAALAKLMSFPEAIADCNK 198 (258)
T ss_dssp HHHHHHHHHH--CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHH--cCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc---CcccHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 8888888876 33345667778888888888888888888888753 233567777888888888888889888888
Q ss_pred HhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 038200 424 FVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKR 461 (523)
Q Consensus 424 ~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 461 (523)
+++..|+++.++..++.+|...|++++|...+++..+.
T Consensus 199 al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 236 (258)
T 3uq3_A 199 AIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTK 236 (258)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 88888888888888888888889998888888887654
No 36
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.71 E-value=4.6e-16 Score=139.64 Aligned_cols=237 Identities=11% Similarity=-0.043 Sum_probs=170.1
Q ss_pred cchHHHHHHHHHhcCCHHHHHHHHhcCCC--CChhHHHHHHHHHHhcCCchHHHHHHHHHHHCCC--CCC----HHHHHH
Q 038200 153 LISWNSIVSGHVRSGDMSAAHELFDIMPE--RNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGF--RGN----DKTMAS 224 (523)
Q Consensus 153 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~--~p~----~~~~~~ 224 (523)
...|..+...+...|++++|...|+++.+ .+...|..+..++...|++++|...+++..+... .++ ..++..
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 84 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELHKDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFAR 84 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhhccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHH
Confidence 34677888899999999999999988643 6788899999999999999999999999887431 112 477888
Q ss_pred HHHHHhccccHHHHHHHHHHHHHcCCCCchHHHHHHhhhhhhcCChHHHHHHHHhcCCCChHHHHHHHHHHHhcCChHHH
Q 038200 225 VLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEG 304 (523)
Q Consensus 225 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 304 (523)
+..++...|++++|...++.+.+.. |+. ..+...|++++|
T Consensus 85 l~~~~~~~~~~~~A~~~~~~a~~~~--~~~--------------------------------------~~~~~~~~~~~a 124 (258)
T 3uq3_A 85 IGNAYHKLGDLKKTIEYYQKSLTEH--RTA--------------------------------------DILTKLRNAEKE 124 (258)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC--CCH--------------------------------------HHHHHHHHHHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcC--chh--------------------------------------HHHHHHhHHHHH
Confidence 8888899999999999998888754 331 123344556666
Q ss_pred HHHHHHHHhCCCCCCCcCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhHhcCCCCChHHHHHHHHHHHcCCChHHHHHHH
Q 038200 305 IKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEIL 384 (523)
Q Consensus 305 ~~~~~~m~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 384 (523)
...++++.... +.+...+..+...+...|++++|...++++.+. .+.+...+..+...|...|++++|.+.+
T Consensus 125 ~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 196 (258)
T 3uq3_A 125 LKKAEAEAYVN------PEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKR--APEDARGYSNRAAALAKLMSFPEAIADC 196 (258)
T ss_dssp HHHHHHHHHCC------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHcC------cchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--CcccHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 66666666632 223445666666677777777777777777663 3335666777777777777777777777
Q ss_pred HhCCCCCCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcC------CCChhhHHHHHH
Q 038200 385 RKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMD------PQDFSRYQFLLN 440 (523)
Q Consensus 385 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~------p~~~~~~~~l~~ 440 (523)
+++.+. .+.+...+..+...+...|++++|...++++.++. |++..++..+..
T Consensus 197 ~~al~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~p~~~~~~~~l~~ 255 (258)
T 3uq3_A 197 NKAIEK---DPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYK 255 (258)
T ss_dssp HHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHH
T ss_pred HHHHHh---CHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhChhhcCCCchHHHHHHHHH
Confidence 777643 13345666777777777888888888888887777 666655555544
No 37
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.70 E-value=6.1e-18 Score=170.05 Aligned_cols=148 Identities=8% Similarity=0.039 Sum_probs=124.8
Q ss_pred ChhHHHHHHHHhhccCCchhHHHHhccCC-------CCCcccHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCcccHHH
Q 038200 20 NSFWTINLLKHSADFGSPDYTVLVFKCIN-------NPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVS 92 (523)
Q Consensus 20 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-------~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ 92 (523)
-..+|++||++|++.|++++|.++|++|. .||+++||+||.+|++.|++++|.++|++|.+.|+.||..||++
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYnt 205 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence 34589999999999999999999997653 69999999999999999999999999999999999999999999
Q ss_pred HHHHHHccCCc-hHHHHHHHHHHHhCCCCCchHHHHHHHHHHccCChHHHHHHHhhcCCC-----CcchHHHHHHHHHhc
Q 038200 93 LFGSCAKTGCV-ERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPR-----DLISWNSIVSGHVRS 166 (523)
Q Consensus 93 ll~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~ll~~~~~~ 166 (523)
+|.++++.|+. +.|.++|++|.+.|+.||..+|++++..+.+.+-++.+.++...+..+ ...+...+.+.|.+.
T Consensus 206 LI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P~f~p~~~~~~~~~t~~LL~dl~s~d 285 (1134)
T 3spa_A 206 ALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAKD 285 (1134)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHHGGGCCCCCCCCCCCCCCCCCTTTHHHHCCC
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHHHHhCcccCCCCCCcccccchHHHHHHHccC
Confidence 99999999986 789999999999999999999999998887765555555554444421 234555566666654
Q ss_pred C
Q 038200 167 G 167 (523)
Q Consensus 167 ~ 167 (523)
+
T Consensus 286 ~ 286 (1134)
T 3spa_A 286 G 286 (1134)
T ss_dssp S
T ss_pred C
Confidence 4
No 38
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.70 E-value=8.4e-16 Score=133.96 Aligned_cols=197 Identities=13% Similarity=0.012 Sum_probs=152.0
Q ss_pred CCchHHHHHHhhhhhhcCChHHHHHHHHhcCC---CChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcCCCHHH
Q 038200 251 KPNIILDTALIDLYSKCQKVEVAQRVFDSMAD---RNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEIT 327 (523)
Q Consensus 251 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~p~~~~ 327 (523)
+++...+..+...+...|++++|+..|++..+ .+...+..+...+...|++++|+..|++..+.. +.+...
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~------P~~~~a 75 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVART------PRYLGG 75 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------TTCHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------CCcHHH
Confidence 34566677777777888888888888877644 356778888888888899999999998888843 224567
Q ss_pred HHHHHHHHhhc-----------CcHHHHHHHHHHhhHhcCCCCChHHHHHHHHHHHcCCChHHHHHHHHhCCCCCCCCCc
Q 038200 328 FIGVICACVRA-----------ELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSF 396 (523)
Q Consensus 328 ~~~ll~~~~~~-----------~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 396 (523)
+..+..++... |++++|...|++..+. .+-+...+..+..+|...|++++|++.|+++.+.. .
T Consensus 76 ~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~----~ 149 (217)
T 2pl2_A 76 YMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERV--NPRYAPLHLQRGLVYALLGERDKAEASLKQALALE----D 149 (217)
T ss_dssp HHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----C
T ss_pred HHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc----c
Confidence 78888888888 9999999999999984 33457888999999999999999999999998642 5
Q ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHH
Q 038200 397 ESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMK 459 (523)
Q Consensus 397 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 459 (523)
+...+..+..++...|++++|...++++++.+|+++.++..++.++...|++++|+..+++..
T Consensus 150 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 150 TPEIRSALAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC---------------
T ss_pred chHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 677888899999999999999999999999999999999999999999999999999998764
No 39
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.68 E-value=1.8e-15 Score=137.25 Aligned_cols=246 Identities=10% Similarity=-0.019 Sum_probs=191.6
Q ss_pred hcCCchHHHHHHHHHHHCCC---CCCHHHHHHHHHHHhccccHHHHHHHHHHHHHcCCCCchHHHHHHhhhhhhcCChHH
Q 038200 196 KSGNPGCSLKLFREMMKSGF---RGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEV 272 (523)
Q Consensus 196 ~~~~~~~a~~~~~~m~~~~~---~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 272 (523)
..|++++|+..|+++.+... +.+..++..+..++...|++++|...|+++.+.. +.+..++..+..+|...|++++
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~ 95 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDA 95 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHH
Confidence 45778889999988887532 1245677888888889999999999999888875 3367888888999999999999
Q ss_pred HHHHHHhcCC---CChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcCCCHHHHHHHHHHHhhcCcHHHHHHHHH
Q 038200 273 AQRVFDSMAD---RNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFR 349 (523)
Q Consensus 273 a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 349 (523)
|...|+++.+ .+...+..+...|...|++++|...|+++... .|+.......+..+...|++++|...++
T Consensus 96 A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~-------~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 168 (275)
T 1xnf_A 96 AYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD-------DPNDPFRSLWLYLAEQKLDEKQAKEVLK 168 (275)
T ss_dssp HHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------CTTCHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred HHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh-------CCCChHHHHHHHHHHHhcCHHHHHHHHH
Confidence 9999988754 46788999999999999999999999999984 4665555556666677899999999998
Q ss_pred HhhHhcCCCCChHHHHHHHHHHHcCCChHHHHHHHHhCCCCCCCCCc-hHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcC
Q 038200 350 QMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSF-ESIMWVSLLSLCRFQGAVAMVERLAKSFVDMD 428 (523)
Q Consensus 350 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 428 (523)
+.... .+++...+ .++..+...++.++|.+.++++........| +...+..+...+...|++++|...++++.+.+
T Consensus 169 ~~~~~--~~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 245 (275)
T 1xnf_A 169 QHFEK--SDKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANN 245 (275)
T ss_dssp HHHHH--SCCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHhc--CCcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Confidence 88874 34444444 4777888888999999999998853111111 15778888889999999999999999999999
Q ss_pred CCChhhHHHHHHHHHhcCChhHHHHHH
Q 038200 429 PQDFSRYQFLLNVYAVAGQWEDVARVR 455 (523)
Q Consensus 429 p~~~~~~~~l~~~~~~~g~~~~A~~~~ 455 (523)
|++... ...++...|++++|++.+
T Consensus 246 p~~~~~---~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 246 VHNFVE---HRYALLELSLLGQDQDDL 269 (275)
T ss_dssp CTTCHH---HHHHHHHHHHHHHC----
T ss_pred chhHHH---HHHHHHHHHHHHhhHHHH
Confidence 976543 366788889999988776
No 40
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.68 E-value=4.2e-17 Score=164.03 Aligned_cols=143 Identities=10% Similarity=0.095 Sum_probs=119.1
Q ss_pred cchHHHHHHHHHhcCCHHHHHHHHhcCC-------CCChhHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHHHHHHH
Q 038200 153 LISWNSIVSGHVRSGDMSAAHELFDIMP-------ERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASV 225 (523)
Q Consensus 153 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~-------~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l 225 (523)
..+||++|++|++.|++++|.++|++|. .||+.+||+||.+|++.|++++|.++|++|.+.|+.||..||+++
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntL 206 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA 206 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 3589999999999999999999997653 489999999999999999999999999999999999999999999
Q ss_pred HHHHhccccH-HHHHHHHHHHHHcCCCCchHHHHHHhhhhhhcCChHHHHHHHHhcCC---C------ChHHHHHHHHHH
Q 038200 226 LTACGRSARF-NEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMAD---R------NLVCWNAMILGH 295 (523)
Q Consensus 226 l~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~------~~~~~~~li~~~ 295 (523)
|.++++.|+. +.|.++|++|.+.|+.||..+|++++....+. .+++..+++.. | ...+...|...|
T Consensus 207 I~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~----~vL~~Vrkv~P~f~p~~~~~~~~~t~~LL~dl~ 282 (1134)
T 3spa_A 207 LQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA----TVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVY 282 (1134)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHH----HHHHHHGGGCCCCCCCCCCCCCCCCCTTTHHHH
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHH----HHHHHHHHhCcccCCCCCCcccccchHHHHHHH
Confidence 9999999985 78999999999999999999999999877764 44444555422 1 123444455556
Q ss_pred HhcC
Q 038200 296 CIHG 299 (523)
Q Consensus 296 ~~~g 299 (523)
.+.+
T Consensus 283 s~d~ 286 (1134)
T 3spa_A 283 AKDG 286 (1134)
T ss_dssp CCCS
T ss_pred ccCC
Confidence 5544
No 41
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.66 E-value=5.7e-15 Score=133.77 Aligned_cols=251 Identities=10% Similarity=-0.014 Sum_probs=161.0
Q ss_pred HHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHcCCCCc--hHHHHHHhhh
Q 038200 186 SWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPN--IILDTALIDL 263 (523)
Q Consensus 186 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~ 263 (523)
.+......+...|++++|+..|++..+.. +.+...+..+..++...|++++|...++++.+....++ ...+..+...
T Consensus 5 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~ 83 (272)
T 3u4t_A 5 VEFRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKI 83 (272)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHH
Confidence 34455566667777777777777776643 22344666666677777777777777777766321121 2336667777
Q ss_pred hhhcCChHHHHHHHHhcCC---CChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcCCCHHHHHHHHHHHhhcCc
Q 038200 264 YSKCQKVEVAQRVFDSMAD---RNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAEL 340 (523)
Q Consensus 264 ~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~ll~~~~~~~~ 340 (523)
|...|++++|+..|++..+ .+..+|..+...|...|++++|...|++..... +.+...+..+...+...++
T Consensus 84 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~------~~~~~~~~~l~~~~~~~~~ 157 (272)
T 3u4t_A 84 LMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT------TTDPKVFYELGQAYYYNKE 157 (272)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS------CCCHHHHHHHHHHHHHTTC
T ss_pred HHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC------CCcHHHHHHHHHHHHHHHH
Confidence 7777777777777776543 345677777777777777777777777776642 2234555555524444458
Q ss_pred HHHHHHHHHHhhHhcCCCCChHHHHHHHHHHHcCCC---hHHHHHHHHhCCCCCCCCCch------HHHHHHHHHHHHhc
Q 038200 341 LTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAEL---TEEAEEILRKMPEDNDNMSFE------SIMWVSLLSLCRFQ 411 (523)
Q Consensus 341 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~------~~~~~~l~~~~~~~ 411 (523)
+++|...|+++.+. .+.+...+..+..++...|+ +++|...++++.+... ..|+ ...+..+...+...
T Consensus 158 ~~~A~~~~~~a~~~--~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~ 234 (272)
T 3u4t_A 158 YVKADSSFVKVLEL--KPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCA-PGGAKYKDELIEANEYIAYYYTIN 234 (272)
T ss_dssp HHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHG-GGGGGGHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHh--CccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHh-cccccchHHHHHHHHHHHHHHHHc
Confidence 88888888877763 33345666667777776666 6667766666553210 0122 24667777788889
Q ss_pred CCHHHHHHHHHHHhhcCCCChhhHHHHHHHHHhcC
Q 038200 412 GAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAG 446 (523)
Q Consensus 412 g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 446 (523)
|++++|...++++.+++|+++.+...+.......+
T Consensus 235 ~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~ 269 (272)
T 3u4t_A 235 RDKVKADAAWKNILALDPTNKKAIDGLKMKLEHHH 269 (272)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHC-------
T ss_pred CCHHHHHHHHHHHHhcCccHHHHHHHhhhhhcccc
Confidence 99999999999999999999888887776665544
No 42
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.64 E-value=1.8e-14 Score=140.21 Aligned_cols=377 Identities=10% Similarity=-0.004 Sum_probs=199.4
Q ss_pred HHHHhhccCCchhHHHHhccCCC-CCcccHHHHHHHHHhCCCc---hHHHHHHHHHHHCCCCCCcccHHHHHHHHHccC-
Q 038200 27 LLKHSADFGSPDYTVLVFKCINN-PGTFCVNAVIKAYSNSCVP---DQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTG- 101 (523)
Q Consensus 27 l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~ll~~~~~~~~~---~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~- 101 (523)
+...+.+.|++++|+++|+...+ .+..++..|...+...|++ ++|+..|++..+. +...+..+...+...+
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~g~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~~~~~ 84 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAELGYSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLAAKPG 84 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCCTGGGTCC--------------------------------CHHHHHHHHHTC--
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHHhCCC
Confidence 34445556666666666655432 3444455555555555555 5666666665532 3344444444333333
Q ss_pred ----CchHHHHHHHHHHHhCCCCCchHHHHHHHHHHccCChHHHHHHHhhcCCCCcchHHHHHHHHHhcCCHHHHHHHHh
Q 038200 102 ----CVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFD 177 (523)
Q Consensus 102 ----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~ 177 (523)
++++|...++...+.|. ...+..|..+|...+..+.+. .+.+.+.
T Consensus 85 ~~~~~~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~~~~~~~~~----------------------------~a~~~~~ 133 (452)
T 3e4b_A 85 ATEAEHHEAESLLKKAFANGE---GNTLIPLAMLYLQYPHSFPNV----------------------------NAQQQIS 133 (452)
T ss_dssp CCHHHHHHHHHHHHHHHHTTC---SSCHHHHHHHHHHCGGGCTTC----------------------------CHHHHHH
T ss_pred CCCcCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHhCCCCCCCH----------------------------HHHHHHH
Confidence 45566666666665442 224444555554433222111 1222222
Q ss_pred cCCC-CChhHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccc---cHHHHHHHHHHHHHcCCCCc
Q 038200 178 IMPE-RNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSA---RFNEGRSVHGYTVRTSLKPN 253 (523)
Q Consensus 178 ~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~---~~~~a~~~~~~~~~~~~~~~ 253 (523)
.... .+...+..+...|...+.++++......+.+.-...+...+..+...|...| +.++|...|++..+.|. ++
T Consensus 134 ~a~~~g~~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~-~~ 212 (452)
T 3e4b_A 134 QWQAAGYPEAGLAQVLLYRTQGTYDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGT-VT 212 (452)
T ss_dssp HHHHHTCTTHHHHHHHHHHHHTCGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTC-SC
T ss_pred HHHHCCCHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCC-HH
Confidence 2211 2445556666666666655444443322222111222225666666666677 77777777777777663 34
Q ss_pred hHHHHHHhhhhhhc----CChHHHHHHHHhcCCCChHHHHHHHHH-H--HhcCChHHHHHHHHHHHhCCCCCCCcCCCHH
Q 038200 254 IILDTALIDLYSKC----QKVEVAQRVFDSMADRNLVCWNAMILG-H--CIHGKPEEGIKLFTALVNGTVAGGSISPDEI 326 (523)
Q Consensus 254 ~~~~~~l~~~~~~~----~~~~~a~~~~~~~~~~~~~~~~~li~~-~--~~~g~~~~a~~~~~~m~~~~~~~~~~~p~~~ 326 (523)
...+..|...|... +++++|...|++....+...+..+... | ...+++++|+.+|++..+.| +..
T Consensus 213 a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g--------~~~ 284 (452)
T 3e4b_A 213 AQRVDSVARVLGDATLGTPDEKTAQALLEKIAPGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD--------QPR 284 (452)
T ss_dssp HHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHGGGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT--------CHH
T ss_pred HHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC--------CHH
Confidence 44444555555544 677788888877763355666666666 3 45788888888888887754 455
Q ss_pred HHHHHHHHHhhcC-----cHHHHHHHHHHhhHhcCCCCChHHHHHHHHHHHc----CCChHHHHHHHHhCCCCCCCCCch
Q 038200 327 TFIGVICACVRAE-----LLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAG----AELTEEAEEILRKMPEDNDNMSFE 397 (523)
Q Consensus 327 ~~~~ll~~~~~~~-----~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~ 397 (523)
.+..|...|. .| ++++|..+|++.. . -++..+..|...|.. ..++++|.++|++..+.+ .++
T Consensus 285 A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-~----g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g---~~~ 355 (452)
T 3e4b_A 285 AELLLGKLYY-EGKWVPADAKAAEAHFEKAV-G----REVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNG---QNS 355 (452)
T ss_dssp HHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-T----TCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTT---CTT
T ss_pred HHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-C----CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhC---hHH
Confidence 5666666665 34 8888888888876 2 356677777777766 348888888888887532 233
Q ss_pred HHHHHHHHHHHHh----cCCHHHHHHHHHHHhhcCCCChhhHHHHHHHH--HhcCChhHHHHHHHHHHh
Q 038200 398 SIMWVSLLSLCRF----QGAVAMVERLAKSFVDMDPQDFSRYQFLLNVY--AVAGQWEDVARVRELMKK 460 (523)
Q Consensus 398 ~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~--~~~g~~~~A~~~~~~m~~ 460 (523)
....+...|.. ..+.++|..+++++.+.++.+ ....+..+. ...++..+|..+.++-++
T Consensus 356 --A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~~~--a~~~l~~l~~~~~~~~~~~a~~~~~~~~~ 420 (452)
T 3e4b_A 356 --ADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDTPE--ANDLATQLEAPLTPAQRAEGQRLVQQELA 420 (452)
T ss_dssp --HHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCCHH--HHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCCHH--HHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 33344444442 457888888888888766533 333333332 223455667777666544
No 43
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.63 E-value=4.4e-14 Score=133.21 Aligned_cols=249 Identities=7% Similarity=0.012 Sum_probs=205.8
Q ss_pred ChhHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcccc-HHHHHHHHHHHHHcCCCCchHHHHHHh
Q 038200 183 NVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSAR-FNEGRSVHGYTVRTSLKPNIILDTALI 261 (523)
Q Consensus 183 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~ 261 (523)
+...|+.+...+...|++++|+..|++.++.. +-+...|..+..++...|+ +++|...++++++... -+..+|..+.
T Consensus 96 ~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P-~~~~a~~~~g 173 (382)
T 2h6f_A 96 FRDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQP-KNYQVWHHRR 173 (382)
T ss_dssp HHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCT-TCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCC-CCHHHHHHHH
Confidence 34678888889999999999999999999863 3356788889999999996 9999999999999763 3788899999
Q ss_pred hhhhhcCChHHHHHHHHhcCC---CChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcCCCHHHHHHHHHHHhh-
Q 038200 262 DLYSKCQKVEVAQRVFDSMAD---RNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVR- 337 (523)
Q Consensus 262 ~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~ll~~~~~- 337 (523)
.++...|++++|+..|+++.+ .+...|..+..++...|++++|+..|+++++.. +-+...|+.+..++..
T Consensus 174 ~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~------P~~~~a~~~lg~~l~~l 247 (382)
T 2h6f_A 174 VLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED------VRNNSVWNQRYFVISNT 247 (382)
T ss_dssp HHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC------TTCHHHHHHHHHHHHHT
T ss_pred HHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHHh
Confidence 999999999999999998854 477899999999999999999999999999954 2357788888888888
Q ss_pred cCcHHHH-----HHHHHHhhHhcCCCCChHHHHHHHHHHHcCC--ChHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHh
Q 038200 338 AELLTEG-----RKYFRQMIDFYKIKPNFAHYWCMANLYAGAE--LTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRF 410 (523)
Q Consensus 338 ~~~~~~a-----~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 410 (523)
.|..++| +..++++.+. -+-+...|..+..++...| ++++|++.++++ +. .+.+...+..+...+..
T Consensus 248 ~~~~~eA~~~~el~~~~~Al~l--~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~---~p~~~~al~~La~~~~~ 321 (382)
T 2h6f_A 248 TGYNDRAVLEREVQYTLEMIKL--VPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QP---SHSSPYLIAFLVDIYED 321 (382)
T ss_dssp TCSCSHHHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TT---TCCCHHHHHHHHHHHHH
T ss_pred cCcchHHHHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-cc---CCCCHHHHHHHHHHHHH
Confidence 5665777 5888888873 3345788888999999988 689999999988 32 24456777788888877
Q ss_pred cC--------C-HHHHHHHHHHH-hhcCCCChhhHHHHHHHHHhc
Q 038200 411 QG--------A-VAMVERLAKSF-VDMDPQDFSRYQFLLNVYAVA 445 (523)
Q Consensus 411 ~g--------~-~~~a~~~~~~~-~~~~p~~~~~~~~l~~~~~~~ 445 (523)
.| + .++|..+++++ .+++|.....|..++..+...
T Consensus 322 ~~~~~~~~~~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~~~ 366 (382)
T 2h6f_A 322 MLENQCDNKEDILNKALELCEILAKEKDTIRKEYWRYIGRSLQSK 366 (382)
T ss_dssp HHHTTCSSHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHH
T ss_pred HhcccccchHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHH
Confidence 64 2 58999999999 899999888898888776643
No 44
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.62 E-value=6.2e-14 Score=136.41 Aligned_cols=332 Identities=11% Similarity=0.020 Sum_probs=176.6
Q ss_pred chHhHHHHHHHHhCCCCCChhHHHHHHHHhhccCCc---hhHHHHhccCCCCCcccHHHHHHHHHhCC-----CchHHHH
Q 038200 2 KQLLQIQAHLITSGLFFNNSFWTINLLKHSADFGSP---DYTVLVFKCINNPGTFCVNAVIKAYSNSC-----VPDQGVV 73 (523)
Q Consensus 2 ~~~~~i~~~~~~~g~~~~~~~~~~~l~~~~~~~g~~---~~A~~~~~~~~~~~~~~~~~ll~~~~~~~-----~~~~a~~ 73 (523)
+.|..++....+.| ++..+..|..+|...|+. ++|++.|++..+.+...+..|...+...+ ++++|+.
T Consensus 20 ~~A~~~~~~aa~~g----~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~~~~A~~~Lg~~~~~~~~~~~~~~~~A~~ 95 (452)
T 3e4b_A 20 VTAQQNYQQLAELG----YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADTSPRAQARLGRLLAAKPGATEAEHHEAES 95 (452)
T ss_dssp HHHHHHHHHHHHHT----CCTGGGTCC----------------------------CHHHHHHHHHTC--CCHHHHHHHHH
T ss_pred HHHHHHHHHHHHCC----CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCcCHHHHHH
Confidence 35666777777664 445566677777778888 99999999887667788888888666665 7789999
Q ss_pred HHHHHHHCCCCCCcccHHHHHHHHHccCCch---HHHHHHHHHHHhCCCCCchHHHHHHHHHHccCChHHHHHHHhhcCC
Q 038200 74 FYLQMIKNGFMPNSYTFVSLFGSCAKTGCVE---RGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSP 150 (523)
Q Consensus 74 ~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 150 (523)
.|++..+.| +...+..|...+...+..+ .+.+.+......| +......|...|...+.++.+
T Consensus 96 ~~~~Aa~~g---~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~~~~~--------- 160 (452)
T 3e4b_A 96 LLKKAFANG---EGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQGTYDQH--------- 160 (452)
T ss_dssp HHHHHHHTT---CSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHTCGGGG---------
T ss_pred HHHHHHHCC---CHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcccC---------
Confidence 999999876 2336777777777665543 3445555554444 455666677777766643332
Q ss_pred CCcchHHHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHhcC---CchHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 038200 151 RDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSG---NPGCSLKLFREMMKSGFRGNDKTMASVLT 227 (523)
Q Consensus 151 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~---~~~~a~~~~~~m~~~~~~p~~~~~~~ll~ 227 (523)
.+.+..++......+...+..|...|...| ++++|+..|++..+.| .++...+..+..
T Consensus 161 ------------------~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~ 221 (452)
T 3e4b_A 161 ------------------LDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVAR 221 (452)
T ss_dssp ------------------HHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHH
T ss_pred ------------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHH
Confidence 223333444444444445555666666666 6666666666666654 334444444444
Q ss_pred HHhcc----ccHHHHHHHHHHHHHcCCCCchHHHHHHhhh-h--hhcCChHHHHHHHHhcCC-CChHHHHHHHHHHHhcC
Q 038200 228 ACGRS----ARFNEGRSVHGYTVRTSLKPNIILDTALIDL-Y--SKCQKVEVAQRVFDSMAD-RNLVCWNAMILGHCIHG 299 (523)
Q Consensus 228 ~~~~~----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~--~~~~~~~~a~~~~~~~~~-~~~~~~~~li~~~~~~g 299 (523)
.|... +++++|...|++.. .| +...+..|... | ...+++++|...|++..+ .+...+..+...|. .|
T Consensus 222 ~y~~g~~~~~d~~~A~~~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~-~G 296 (452)
T 3e4b_A 222 VLGDATLGTPDEKTAQALLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAADQPRAELLLGKLYY-EG 296 (452)
T ss_dssp HHTCGGGSSCCHHHHHHHHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HC
T ss_pred HHhCCCCCCCCHHHHHHHHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH-cC
Confidence 55433 46666666666655 22 33444444444 2 345666666666666543 24455555555555 33
Q ss_pred -----ChHHHHHHHHHHHhCCCCCCCcCCCHHHHHHHHHHHhh----cCcHHHHHHHHHHhhHhcCCCCChHHHHHHHHH
Q 038200 300 -----KPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVR----AELLTEGRKYFRQMIDFYKIKPNFAHYWCMANL 370 (523)
Q Consensus 300 -----~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 370 (523)
++++|..+|++.. .| +......|...|.. ..++++|..+|++..+. | ++.....|..+
T Consensus 297 ~g~~~d~~~A~~~~~~Aa-~g--------~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~-g---~~~A~~~Lg~~ 363 (452)
T 3e4b_A 297 KWVPADAKAAEAHFEKAV-GR--------EVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARN-G---QNSADFAIAQL 363 (452)
T ss_dssp SSSCCCHHHHHHHHHTTT-TT--------CHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTT-T---CTTHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHh-CC--------CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhh-C---hHHHHHHHHHH
Confidence 6666666666655 32 33444444444444 23677777777776653 3 23344455555
Q ss_pred HHc----CCChHHHHHHHHhCCC
Q 038200 371 YAG----AELTEEAEEILRKMPE 389 (523)
Q Consensus 371 ~~~----~g~~~~A~~~~~~~~~ 389 (523)
|.. ..+.++|..+|+...+
T Consensus 364 y~~G~g~~~d~~~A~~~~~~A~~ 386 (452)
T 3e4b_A 364 FSQGKGTKPDPLNAYVFSQLAKA 386 (452)
T ss_dssp HHSCTTBCCCHHHHHHHHHHHHT
T ss_pred HHhCCCCCCCHHHHHHHHHHHHH
Confidence 543 3466777777777664
No 45
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.61 E-value=1.4e-13 Score=122.94 Aligned_cols=139 Identities=10% Similarity=0.039 Sum_probs=77.3
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcCC-CHHHHHHHHHHHhhcCcHHHHHHHHHHhhHhcCCCCChHHH
Q 038200 286 VCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISP-DEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHY 364 (523)
Q Consensus 286 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 364 (523)
..+..+...|...|++++|..+++++...+ ..| +...+..+...+...|++++|...++++.+. .+.+...+
T Consensus 106 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-----~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~ 178 (252)
T 2ho1_A 106 RVLNNYGGFLYEQKRYEEAYQRLLEASQDT-----LYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRL--NRNQPSVA 178 (252)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHTTCT-----TCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHhCc-----cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CcccHHHH
Confidence 344445555555555555555555555421 223 3445555555666666666666666666553 22345555
Q ss_pred HHHHHHHHcCCChHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhh
Q 038200 365 WCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSR 434 (523)
Q Consensus 365 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 434 (523)
..+...|...|++++|.+.++++.+. .+.+...+..+...+...|+.++|.++++++.+..|+++..
T Consensus 179 ~~la~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 245 (252)
T 2ho1_A 179 LEMADLLYKEREYVPARQYYDLFAQG---GGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSLEY 245 (252)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTT---SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHh---CcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHHH
Confidence 66666666666666666666665532 22334445555555666666666666666666666655543
No 46
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.61 E-value=1.1e-14 Score=129.26 Aligned_cols=144 Identities=8% Similarity=0.046 Sum_probs=71.4
Q ss_pred hHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhHhcCCCCChHHH
Q 038200 285 LVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHY 364 (523)
Q Consensus 285 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 364 (523)
...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|..+++++.+. .+.+...+
T Consensus 91 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~ 162 (243)
T 2q7f_A 91 ATAYYGAGNVYVVKEMYKEAKDMFEKALRAG------MENGDLFYMLGTVLVKLEQPKLALPYLQRAVEL--NENDTEAR 162 (243)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT------CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHH--CTTCHHHH
T ss_pred hHHHHHHHHHHHHhccHHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCccHHHH
Confidence 3444444455555555555555555555432 223444445555555555555555555555542 22234445
Q ss_pred HHHHHHHHcCCChHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhhHHHHH
Q 038200 365 WCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLL 439 (523)
Q Consensus 365 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 439 (523)
..+...+...|++++|.+.++++.+. .+.+...+..+...+...|++++|...++++.+.+|+++.++..+.
T Consensus 163 ~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~ 234 (243)
T 2q7f_A 163 FQFGMCLANEGMLDEALSQFAAVTEQ---DPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHAKK 234 (243)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHHHHHHHT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHh---CcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcchHHHHHHHH
Confidence 55555555555555555555554432 1223444445555555555555555555555555555554444443
No 47
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.60 E-value=1e-13 Score=123.94 Aligned_cols=199 Identities=9% Similarity=-0.038 Sum_probs=170.4
Q ss_pred hHHHHHHhhhhhhcCChHHHHHHHHhcCC---CChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcCCCHHHHHH
Q 038200 254 IILDTALIDLYSKCQKVEVAQRVFDSMAD---RNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIG 330 (523)
Q Consensus 254 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~ 330 (523)
...+..+...+...|++++|...|+++.+ .+...+..+...|...|++++|.+.|+++.... +.+...+..
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~------~~~~~~~~~ 110 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASD------SRNARVLNN 110 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------TTCHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC------cCcHHHHHH
Confidence 46677777788888888888888887643 466788889999999999999999999998854 336778888
Q ss_pred HHHHHhhcCcHHHHHHHHHHhhHhcCCCC-ChHHHHHHHHHHHcCCChHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHH
Q 038200 331 VICACVRAELLTEGRKYFRQMIDFYKIKP-NFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCR 409 (523)
Q Consensus 331 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 409 (523)
+...+...|++++|..+++++.+. +..| +...+..+...+...|++++|.+.++++.+. .+.+...+..+...+.
T Consensus 111 la~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~~la~~~~ 186 (252)
T 2ho1_A 111 YGGFLYEQKRYEEAYQRLLEASQD-TLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRL---NRNQPSVALEMADLLY 186 (252)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHTTC-TTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHHhC-ccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CcccHHHHHHHHHHHH
Confidence 999999999999999999999872 3445 4678888999999999999999999998853 2335778888888999
Q ss_pred hcCCHHHHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 038200 410 FQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRR 462 (523)
Q Consensus 410 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 462 (523)
..|++++|...++++.+..|+++..+..++.+|...|++++|.++++++.+..
T Consensus 187 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~ 239 (252)
T 2ho1_A 187 KEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLY 239 (252)
T ss_dssp HTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 99999999999999999999999999999999999999999999999997754
No 48
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.60 E-value=2.6e-14 Score=126.87 Aligned_cols=199 Identities=11% Similarity=0.066 Sum_probs=156.5
Q ss_pred chHHHHHHhhhhhhcCChHHHHHHHHhcCC---CChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcCCCHHHHH
Q 038200 253 NIILDTALIDLYSKCQKVEVAQRVFDSMAD---RNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFI 329 (523)
Q Consensus 253 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~ 329 (523)
....+..+...+...|++++|...|+++.+ .+...+..+...+...|++++|...++++.... +.+...+.
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~------~~~~~~~~ 95 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELD------SSAATAYY 95 (243)
T ss_dssp --------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------TTCHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC------CcchHHHH
Confidence 445666677777788888888888877643 356788888999999999999999999998854 34677888
Q ss_pred HHHHHHhhcCcHHHHHHHHHHhhHhcCCCCChHHHHHHHHHHHcCCChHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHH
Q 038200 330 GVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCR 409 (523)
Q Consensus 330 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 409 (523)
.+...+...|++++|..+++++.+. .+.+...+..+...+...|++++|.+.++++.+. .+.+...+..+...+.
T Consensus 96 ~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~l~~~~~ 170 (243)
T 2q7f_A 96 GAGNVYVVKEMYKEAKDMFEKALRA--GMENGDLFYMLGTVLVKLEQPKLALPYLQRAVEL---NENDTEARFQFGMCLA 170 (243)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--TCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh---CCccHHHHHHHHHHHH
Confidence 8999999999999999999999884 4456788999999999999999999999998853 2345778888888999
Q ss_pred hcCCHHHHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 038200 410 FQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRR 462 (523)
Q Consensus 410 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 462 (523)
..|++++|...++++.+..|+++.++..++.+|...|++++|...++++.+..
T Consensus 171 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 223 (243)
T 2q7f_A 171 NEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQ 223 (243)
T ss_dssp HHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHC
T ss_pred HcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccC
Confidence 99999999999999999999999999999999999999999999999997753
No 49
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.60 E-value=7.1e-12 Score=126.06 Aligned_cols=413 Identities=8% Similarity=0.022 Sum_probs=288.2
Q ss_pred CCChhHHHHHHHHhhccCCchhHHHHhccCC---CCCcccHHHHHHHHHhCCC---chHHHHHHHHHHHCC-CCCCcccH
Q 038200 18 FNNSFWTINLLKHSADFGSPDYTVLVFKCIN---NPGTFCVNAVIKAYSNSCV---PDQGVVFYLQMIKNG-FMPNSYTF 90 (523)
Q Consensus 18 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~ll~~~~~~~~---~~~a~~~~~~m~~~~-~~p~~~~~ 90 (523)
|.|...|..++..+.+.+.++.+..+|+.+. +.....|...+..-.+.++ ++.+..+|++.+... .+|+...|
T Consensus 63 p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv~LW 142 (679)
T 4e6h_A 63 PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDLSLW 142 (679)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCHHHH
T ss_pred cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCHHHH
Confidence 5799999999999999999999999999875 3456678888888888888 999999999998763 24888888
Q ss_pred HHHHHHHHccCCc--------hHHHHHHHHHHH-hCC-CCC-chHHHHHHHHHHc---------cCChHHHHHHHhhcCC
Q 038200 91 VSLFGSCAKTGCV--------ERGGMCHGLALK-NGV-DFE-LPVMNSLINMYGC---------FGAMDCARNMFVQMSP 150 (523)
Q Consensus 91 ~~ll~~~~~~~~~--------~~a~~~~~~~~~-~~~-~~~-~~~~~~l~~~~~~---------~g~~~~A~~~~~~~~~ 150 (523)
...+....+.++. +.+.++|+..+. .|. .++ ..+|...+..... .++++.+.++|++...
T Consensus 143 ~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~raL~ 222 (679)
T 4e6h_A 143 LSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLLC 222 (679)
T ss_dssp HHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHHHh
Confidence 8887766665554 334577887765 365 454 4688888876543 3457889999998874
Q ss_pred -CCc---chHH---HHHHHH----------HhcCCHHHHHHHHhc-------CCC--------------C--C------h
Q 038200 151 -RDL---ISWN---SIVSGH----------VRSGDMSAAHELFDI-------MPE--------------R--N------V 184 (523)
Q Consensus 151 -~~~---~~~~---~ll~~~----------~~~~~~~~a~~~~~~-------~~~--------------~--~------~ 184 (523)
|.. .+|. .+...+ -...+++.|...+.+ +.. | + .
T Consensus 223 iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql 302 (679)
T 4e6h_A 223 QPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQL 302 (679)
T ss_dssp SCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHH
T ss_pred CccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhccCCCCchhHHHHH
Confidence 211 2222 221111 011233444444433 111 1 0 1
Q ss_pred hHHHHHHHHHHhcC-------CchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHH-HHHHHHHHcCCCCchHH
Q 038200 185 VSWNIMISGYSKSG-------NPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGR-SVHGYTVRTSLKPNIIL 256 (523)
Q Consensus 185 ~~~~~li~~~~~~~-------~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~-~~~~~~~~~~~~~~~~~ 256 (523)
..|...+..--..+ ..+.+..+|++.+.. ++-+...|...+.-+...|+.+.|. .+|+..... ++.+...
T Consensus 303 ~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~L 380 (679)
T 4e6h_A 303 LIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH-VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVL 380 (679)
T ss_dssp HHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHH
T ss_pred HHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHH
Confidence 34555554333322 123456678888775 3557777888888888889999996 999999875 4557777
Q ss_pred HHHHhhhhhhcCChHHHHHHHHhcCC-------------CC------------hHHHHHHHHHHHhcCChHHHHHHHHHH
Q 038200 257 DTALIDLYSKCQKVEVAQRVFDSMAD-------------RN------------LVCWNAMILGHCIHGKPEEGIKLFTAL 311 (523)
Q Consensus 257 ~~~l~~~~~~~~~~~~a~~~~~~~~~-------------~~------------~~~~~~li~~~~~~g~~~~a~~~~~~m 311 (523)
+-..+....+.|+++.|.++|+++.. |+ ...|...+....+.|+.+.|..+|.+.
T Consensus 381 wl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A 460 (679)
T 4e6h_A 381 AFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKC 460 (679)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 88888889999999999999998753 21 236788888888889999999999999
Q ss_pred HhC-CCCCCCcCCCHHHHHHHHHHHhh-cCcHHHHHHHHHHhhHhcCCCCChHHHHHHHHHHHcCCChHHHHHHHHhCCC
Q 038200 312 VNG-TVAGGSISPDEITFIGVICACVR-AELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPE 389 (523)
Q Consensus 312 ~~~-~~~~~~~~p~~~~~~~ll~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 389 (523)
++. + .+....|...+..-.+ .++.+.|..+|+...+. .+-+...+...++.....|+.+.|..+|++...
T Consensus 461 ~~~~~------~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~--~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~ 532 (679)
T 4e6h_A 461 RRLKK------LVTPDIYLENAYIEYHISKDTKTACKVLELGLKY--FATDGEYINKYLDFLIYVNEESQVKSLFESSID 532 (679)
T ss_dssp HHTGG------GSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTT
T ss_pred HHhcC------CCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 885 3 1223334333322223 35689999999999985 444666777888888889999999999999886
Q ss_pred CCCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhhHHHHHHH
Q 038200 390 DNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNV 441 (523)
Q Consensus 390 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 441 (523)
......-....|...+..-...|+.+.+..+.+++.+..|+++ ....++.-
T Consensus 533 ~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~~~-~~~~f~~r 583 (679)
T 4e6h_A 533 KISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPEVN-KLEEFTNK 583 (679)
T ss_dssp TSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTTCC-HHHHHHHH
T ss_pred hcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCc-HHHHHHHH
Confidence 4211112457888888888899999999999999999999764 33333333
No 50
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.60 E-value=8.1e-13 Score=119.62 Aligned_cols=224 Identities=6% Similarity=-0.095 Sum_probs=124.6
Q ss_pred ChhHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc----cccHHHHHHHHHHHHHcCCCCchHHHH
Q 038200 183 NVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGR----SARFNEGRSVHGYTVRTSLKPNIILDT 258 (523)
Q Consensus 183 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~ 258 (523)
+..++..+...+...|++++|...|++..+. .+...+..+...+.. .+++++|...|++..+.+
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--------- 72 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--------- 72 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---------
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---------
Confidence 3445555555566666666666666655552 233444445555555 555555555555555443
Q ss_pred HHhhhhhhcCChHHHHHHHHhcCCCChHHHHHHHHHHHh----cCChHHHHHHHHHHHhCCCCCCCcCCCHHHHHHHHHH
Q 038200 259 ALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCI----HGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICA 334 (523)
Q Consensus 259 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~ll~~ 334 (523)
+...+..+...|.. .+++++|+..|++..+.+ +...+..+...
T Consensus 73 -------------------------~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--------~~~a~~~lg~~ 119 (273)
T 1ouv_A 73 -------------------------YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK--------YAEGCASLGGI 119 (273)
T ss_dssp -------------------------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--------CHHHHHHHHHH
T ss_pred -------------------------CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC--------CccHHHHHHHH
Confidence 33344444444444 555555555555555532 34455555555
Q ss_pred Hhh----cCcHHHHHHHHHHhhHhcCCCCChHHHHHHHHHHHc----CCChHHHHHHHHhCCCCCCCCCchHHHHHHHHH
Q 038200 335 CVR----AELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAG----AELTEEAEEILRKMPEDNDNMSFESIMWVSLLS 406 (523)
Q Consensus 335 ~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~ 406 (523)
|.. .+++++|...|++..+. + +...+..+...|.. .+++++|.+.+++..+. .+...+..+..
T Consensus 120 ~~~~~~~~~~~~~A~~~~~~a~~~-~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~-----~~~~a~~~lg~ 190 (273)
T 1ouv_A 120 YHDGKVVTRDFKKAVEYFTKACDL-N---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDL-----KDSPGCFNAGN 190 (273)
T ss_dssp HHHCSSSCCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-----TCHHHHHHHHH
T ss_pred HHcCCCcccCHHHHHHHHHHHHhc-C---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC-----CCHHHHHHHHH
Confidence 555 56666666666666553 2 34455555555555 56666666666665532 12344455555
Q ss_pred HHHh----cCCHHHHHHHHHHHhhcCCCChhhHHHHHHHHHh----cCChhHHHHHHHHHHhCC
Q 038200 407 LCRF----QGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAV----AGQWEDVARVRELMKKRR 462 (523)
Q Consensus 407 ~~~~----~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~~ 462 (523)
.+.. .+++++|...++++.+.+| +.++..++.+|.. .+++++|...+++..+.+
T Consensus 191 ~~~~g~~~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 191 MYHHGEGATKNFKEALARYSKACELEN--GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp HHHHTCSSCCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HHHcCCCCCccHHHHHHHHHHHHhCCC--HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 5655 6666666666666666554 4566666666666 666666666666665544
No 51
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.59 E-value=1.2e-14 Score=140.21 Aligned_cols=274 Identities=8% Similarity=-0.034 Sum_probs=196.5
Q ss_pred HHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCH----HHHHHHHHHHhccccHHHHHHHHHHHHHc----CC-CCchHH
Q 038200 186 SWNIMISGYSKSGNPGCSLKLFREMMKSGFRGND----KTMASVLTACGRSARFNEGRSVHGYTVRT----SL-KPNIIL 256 (523)
Q Consensus 186 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~ 256 (523)
.+..+...+...|++++|..+|++..+.+ +.+. ..+..+..++...|++++|...++++.+. +. +....+
T Consensus 50 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 128 (411)
T 4a1s_A 50 ELALEGERLCNAGDCRAGVAFFQAAIQAG-TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKS 128 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHhc-ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHH
Confidence 34455667777888888888888877753 1122 35667777777888888888887776653 11 123466
Q ss_pred HHHHhhhhhhcCChHHHHHHHHhcCCC---------ChHHHHHHHHHHHhcCC-----------------hHHHHHHHHH
Q 038200 257 DTALIDLYSKCQKVEVAQRVFDSMADR---------NLVCWNAMILGHCIHGK-----------------PEEGIKLFTA 310 (523)
Q Consensus 257 ~~~l~~~~~~~~~~~~a~~~~~~~~~~---------~~~~~~~li~~~~~~g~-----------------~~~a~~~~~~ 310 (523)
+..+...|...|++++|...|++..+- ...++..+...|...|+ +++|+..+++
T Consensus 129 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~ 208 (411)
T 4a1s_A 129 SGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQE 208 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHH
Confidence 777778888888888888887776431 23467778888888888 8888888887
Q ss_pred HHhCCCCCCCcCC-CHHHHHHHHHHHhhcCcHHHHHHHHHHhhHhcCCCCC----hHHHHHHHHHHHcCCChHHHHHHHH
Q 038200 311 LVNGTVAGGSISP-DEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPN----FAHYWCMANLYAGAELTEEAEEILR 385 (523)
Q Consensus 311 m~~~~~~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~ 385 (523)
......... ..+ ...++..+...+...|++++|...+++..+...-.++ ...+..+...|...|++++|.+.++
T Consensus 209 al~~~~~~~-~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 287 (411)
T 4a1s_A 209 NLKLMRDLG-DRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYK 287 (411)
T ss_dssp HHHHHHHHT-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred HHHHHHHcC-CHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHH
Confidence 655210000 111 2347778888899999999999999988764211112 2378889999999999999999998
Q ss_pred hCCCCCCCCC---chHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCC------ChhhHHHHHHHHHhcCChhHHHHHHH
Q 038200 386 KMPEDNDNMS---FESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQ------DFSRYQFLLNVYAVAGQWEDVARVRE 456 (523)
Q Consensus 386 ~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~------~~~~~~~l~~~~~~~g~~~~A~~~~~ 456 (523)
+......... ....++..+...+...|++++|...++++.+..+. ...++..++.+|...|++++|...++
T Consensus 288 ~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 367 (411)
T 4a1s_A 288 RTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAE 367 (411)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 8764211011 12567778888899999999999999999886432 24588899999999999999999999
Q ss_pred HHHhC
Q 038200 457 LMKKR 461 (523)
Q Consensus 457 ~m~~~ 461 (523)
+..+.
T Consensus 368 ~al~~ 372 (411)
T 4a1s_A 368 QHLQL 372 (411)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 88664
No 52
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.59 E-value=3.6e-14 Score=136.47 Aligned_cols=275 Identities=12% Similarity=0.008 Sum_probs=176.1
Q ss_pred hhHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCC----HHHHHHHHHHHhccccHHHHHHHHHHHHHc----CCCC-ch
Q 038200 184 VVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGN----DKTMASVLTACGRSARFNEGRSVHGYTVRT----SLKP-NI 254 (523)
Q Consensus 184 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~ 254 (523)
...+......+...|++++|...|++..+.+ +.+ ...+..+..++...|++++|...++++... +..| ..
T Consensus 9 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 87 (406)
T 3sf4_A 9 CLELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEA 87 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHH
Confidence 3445556666777777777777777776642 112 245666666777777777777777665443 1111 24
Q ss_pred HHHHHHhhhhhhcCChHHHHHHHHhcCC-----CC----hHHHHHHHHHHHhcCC--------------------hHHHH
Q 038200 255 ILDTALIDLYSKCQKVEVAQRVFDSMAD-----RN----LVCWNAMILGHCIHGK--------------------PEEGI 305 (523)
Q Consensus 255 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~----~~~~~~li~~~~~~g~--------------------~~~a~ 305 (523)
.++..+...|...|++++|...+++..+ .+ ..++..+...|...|+ +++|.
T Consensus 88 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~ 167 (406)
T 3sf4_A 88 KASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAV 167 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHH
Confidence 4566667777777777777777766543 11 3366677777777777 77777
Q ss_pred HHHHHHHhCCCCCCCcCC-CHHHHHHHHHHHhhcCcHHHHHHHHHHhhHhcCCCCC----hHHHHHHHHHHHcCCChHHH
Q 038200 306 KLFTALVNGTVAGGSISP-DEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPN----FAHYWCMANLYAGAELTEEA 380 (523)
Q Consensus 306 ~~~~~m~~~~~~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A 380 (523)
..+.+......... ..| ...++..+...+...|++++|...+++..+...-.++ ..++..+...|...|++++|
T Consensus 168 ~~~~~al~~~~~~~-~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 246 (406)
T 3sf4_A 168 DFYEENLSLVTALG-DRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETA 246 (406)
T ss_dssp HHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHhcc-CcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHH
Confidence 77776654210000 111 1346677777788888888888888877653211122 23677778888888888888
Q ss_pred HHHHHhCCCCCC--CCCc-hHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCC------ChhhHHHHHHHHHhcCChhHH
Q 038200 381 EEILRKMPEDND--NMSF-ESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQ------DFSRYQFLLNVYAVAGQWEDV 451 (523)
Q Consensus 381 ~~~~~~~~~~~~--~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~------~~~~~~~l~~~~~~~g~~~~A 451 (523)
.+.+++...... +..+ ...++..+...+...|++++|...++++.+..+. ...++..++.+|...|++++|
T Consensus 247 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 326 (406)
T 3sf4_A 247 SEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQA 326 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHH
Confidence 888877653210 0111 1456667777788888888888888888775332 155777888888888888888
Q ss_pred HHHHHHHHh
Q 038200 452 ARVRELMKK 460 (523)
Q Consensus 452 ~~~~~~m~~ 460 (523)
...+++..+
T Consensus 327 ~~~~~~al~ 335 (406)
T 3sf4_A 327 MHFAEKHLE 335 (406)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 888887654
No 53
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.59 E-value=1.6e-13 Score=120.10 Aligned_cols=194 Identities=10% Similarity=0.005 Sum_probs=93.1
Q ss_pred HHHHhhhhhhcCChHHHHHHHHhcCC---CChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcCCCHHHHHHHHH
Q 038200 257 DTALIDLYSKCQKVEVAQRVFDSMAD---RNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVIC 333 (523)
Q Consensus 257 ~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~ll~ 333 (523)
+..+...+...|++++|...|+++.+ .+...+..+...|...|++++|...++++.... +.+..++..+..
T Consensus 11 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~------~~~~~~~~~l~~ 84 (225)
T 2vq2_A 11 KTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK------PDSAEINNNYGW 84 (225)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC------CCChHHHHHHHH
Confidence 33333344444444444444433321 123344444445555555555555555554432 123444445555
Q ss_pred HHhhc-CcHHHHHHHHHHhhHhcCCCCC-hHHHHHHHHHHHcCCChHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHhc
Q 038200 334 ACVRA-ELLTEGRKYFRQMIDFYKIKPN-FAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQ 411 (523)
Q Consensus 334 ~~~~~-~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 411 (523)
.+... |++++|...++++.+. +..|+ ...+..+...+...|++++|.+.++++.+. .+.+...+..+...+...
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~la~~~~~~ 160 (225)
T 2vq2_A 85 FLCGRLNRPAESMAYFDKALAD-PTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAA---QPQFPPAFKELARTKMLA 160 (225)
T ss_dssp HHHTTTCCHHHHHHHHHHHHTS-TTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHH
T ss_pred HHHHhcCcHHHHHHHHHHHHcC-cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCchHHHHHHHHHHHc
Confidence 55555 5555555555555441 22222 344445555555555555555555554432 112244444555555555
Q ss_pred CCHHHHHHHHHHHhhcCC-CChhhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 038200 412 GAVAMVERLAKSFVDMDP-QDFSRYQFLLNVYAVAGQWEDVARVRELMKK 460 (523)
Q Consensus 412 g~~~~a~~~~~~~~~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 460 (523)
|++++|...++++.+..| .++..+..++..+...|+.++|..+++.+.+
T Consensus 161 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 210 (225)
T 2vq2_A 161 GQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQA 210 (225)
T ss_dssp TCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 555555555555555555 5555555555555555555555555555543
No 54
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.59 E-value=9.1e-14 Score=125.77 Aligned_cols=229 Identities=8% Similarity=0.007 Sum_probs=150.4
Q ss_pred HHHHHHHHHhccccHHHHHHHHHHHHHcCCCCchHHHHHHhhhhhhcCChHHHHHHHHhcCC--CC----hHHHHHHHHH
Q 038200 221 TMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMAD--RN----LVCWNAMILG 294 (523)
Q Consensus 221 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~----~~~~~~li~~ 294 (523)
.+......+...|++++|...++++.+... .+...+..+..+|...|++++|+..+++..+ ++ ...|..+...
T Consensus 5 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~ 83 (272)
T 3u4t_A 5 VEFRYADFLFKNNNYAEAIEVFNKLEAKKY-NSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKI 83 (272)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHHHHTTC-CCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHH
Confidence 445566677788888888888888877642 2455666777777777788877777777644 12 2246777777
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCCCcCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhHhcCCCCChHHHHHHHHHHHcC
Q 038200 295 HCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGA 374 (523)
Q Consensus 295 ~~~~g~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 374 (523)
+...|++++|+..|++..+.. +.+...+..+...+...|++++|...|++..+. .+.+...+..+...+...
T Consensus 84 ~~~~~~~~~A~~~~~~a~~~~------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~ 155 (272)
T 3u4t_A 84 LMKKGQDSLAIQQYQAAVDRD------TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRP--TTTDPKVFYELGQAYYYN 155 (272)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS------TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCS--SCCCHHHHHHHHHHHHHT
T ss_pred HHHcccHHHHHHHHHHHHhcC------cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhc--CCCcHHHHHHHHHHHHHH
Confidence 777777777777777777743 234566777777777777777777777777662 333456666666233334
Q ss_pred CChHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHhcCC---HHHHHHHHHHHhhcC---CCC-----hhhHHHHHHHHH
Q 038200 375 ELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGA---VAMVERLAKSFVDMD---PQD-----FSRYQFLLNVYA 443 (523)
Q Consensus 375 g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~---p~~-----~~~~~~l~~~~~ 443 (523)
+++++|.+.++++.+. .+.+...+..+...+...|+ +++|...++++.+.. |+. ..+|..++.+|.
T Consensus 156 ~~~~~A~~~~~~a~~~---~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 232 (272)
T 3u4t_A 156 KEYVKADSSFVKVLEL---KPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYT 232 (272)
T ss_dssp TCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh---CccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHH
Confidence 4777777777777643 12234555556666666666 666777777777643 321 146667777777
Q ss_pred hcCChhHHHHHHHHHHhC
Q 038200 444 VAGQWEDVARVRELMKKR 461 (523)
Q Consensus 444 ~~g~~~~A~~~~~~m~~~ 461 (523)
..|++++|...+++..+.
T Consensus 233 ~~~~~~~A~~~~~~al~~ 250 (272)
T 3u4t_A 233 INRDKVKADAAWKNILAL 250 (272)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHhc
Confidence 777777777777777654
No 55
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.58 E-value=2.2e-13 Score=119.17 Aligned_cols=208 Identities=10% Similarity=0.062 Sum_probs=141.4
Q ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHHcCCCCchHHHHHHhhhhhhcCChHHHHHHHHhcCC---CChHHHHHHHHHHH
Q 038200 220 KTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMAD---RNLVCWNAMILGHC 296 (523)
Q Consensus 220 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~ 296 (523)
..+..+...+...|++++|...++.+.+.. +.+..++..+...|...|++++|...|+++.+ .+..++..+...+.
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~ 87 (225)
T 2vq2_A 9 NIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLC 87 (225)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence 344444455555555555555555555442 22344555555555555555555555555422 34556677777788
Q ss_pred hc-CChHHHHHHHHHHHhCCCCCCCcCCC-HHHHHHHHHHHhhcCcHHHHHHHHHHhhHhcCCCCChHHHHHHHHHHHcC
Q 038200 297 IH-GKPEEGIKLFTALVNGTVAGGSISPD-EITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGA 374 (523)
Q Consensus 297 ~~-g~~~~a~~~~~~m~~~~~~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 374 (523)
.. |++++|...++++...+ ..|+ ...+..+...+...|++++|...++++.+. .+.+...+..+...+...
T Consensus 88 ~~~~~~~~A~~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~ 160 (225)
T 2vq2_A 88 GRLNRPAESMAYFDKALADP-----TYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAA--QPQFPPAFKELARTKMLA 160 (225)
T ss_dssp TTTCCHHHHHHHHHHHHTST-----TCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHH
T ss_pred HhcCcHHHHHHHHHHHHcCc-----CCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCchHHHHHHHHHHHc
Confidence 88 88888888888887732 2343 567777888888888888888888888773 334577888888888889
Q ss_pred CChHHHHHHHHhCCCCCCCCC-chHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhhHHHH
Q 038200 375 ELTEEAEEILRKMPEDNDNMS-FESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFL 438 (523)
Q Consensus 375 g~~~~A~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 438 (523)
|++++|.+.++++.+. .+ .+...+..+...+...|+.+.+..+++.+.+..|+++.....+
T Consensus 161 ~~~~~A~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 222 (225)
T 2vq2_A 161 GQLGDADYYFKKYQSR---VEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFPYSEELQTVL 222 (225)
T ss_dssp TCHHHHHHHHHHHHHH---HCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHh---CCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHh
Confidence 9999999998887753 22 3455666666677888999999999999988889877655443
No 56
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.58 E-value=1.2e-13 Score=120.12 Aligned_cols=206 Identities=12% Similarity=0.020 Sum_probs=90.5
Q ss_pred ChhHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHcCCCCchHHHHHHhh
Q 038200 183 NVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALID 262 (523)
Q Consensus 183 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 262 (523)
+...+..+...+.+.|++++|...|++.++.. +.+...+..+..++.+.|++++|...+++..+.. +.+...+..+..
T Consensus 4 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~ 81 (217)
T 2pl2_A 4 AEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLSE 81 (217)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHH
Confidence 34455556666666666666666666666542 3345555566666666666666666666666553 224455555555
Q ss_pred hhhhcCChHHHHHHHHhcCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcCCC-HHHHHHHHHHHhhcCcH
Q 038200 263 LYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPD-EITFIGVICACVRAELL 341 (523)
Q Consensus 263 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~p~-~~~~~~ll~~~~~~~~~ 341 (523)
++...+.. ... .+...|++++|+..|++..+. .|+ ...+..+..++...|++
T Consensus 82 ~~~~~~~~-----------~~~---------~~~~~g~~~~A~~~~~~al~~-------~P~~~~~~~~lg~~~~~~g~~ 134 (217)
T 2pl2_A 82 AYVALYRQ-----------AED---------RERGKGYLEQALSVLKDAERV-------NPRYAPLHLQRGLVYALLGER 134 (217)
T ss_dssp HHHHHHHT-----------CSS---------HHHHHHHHHHHHHHHHHHHHH-------CTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHhhhh-----------hhh---------hcccccCHHHHHHHHHHHHHh-------CcccHHHHHHHHHHHHHcCCh
Confidence 55554000 000 000114444444444444442 222 33444444444444444
Q ss_pred HHHHHHHHHhhHhcCCCCChHHHHHHHHHHHcCCChHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHhcCCHHHHHHHH
Q 038200 342 TEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLA 421 (523)
Q Consensus 342 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 421 (523)
++|+..|+++.+. . .++..+..+..+|...|++++|...++++.+. .+.+...+..+...+...|++++|...+
T Consensus 135 ~~A~~~~~~al~~-~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~---~P~~~~~~~~la~~~~~~g~~~~A~~~~ 208 (217)
T 2pl2_A 135 DKAEASLKQALAL-E--DTPEIRSALAELYLSMGRLDEALAQYAKALEQ---APKDLDLRVRYASALLLKGKAEEAARAA 208 (217)
T ss_dssp HHHHHHHHHHHHH-C--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHTC-----------
T ss_pred HHHHHHHHHHHhc-c--cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHHccCHHHHHHHH
Confidence 4444444444443 2 34444444444444444444444444444431 1112333444444444444444444444
Q ss_pred HH
Q 038200 422 KS 423 (523)
Q Consensus 422 ~~ 423 (523)
++
T Consensus 209 ~~ 210 (217)
T 2pl2_A 209 AL 210 (217)
T ss_dssp --
T ss_pred HH
Confidence 43
No 57
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.58 E-value=1.1e-12 Score=118.72 Aligned_cols=230 Identities=10% Similarity=-0.015 Sum_probs=153.1
Q ss_pred CCcchHHHHHHHHHhcCCHHHHHHHHhcCCCC-ChhHHHHHHHHHHh----cCCchHHHHHHHHHHHCCCCCCHHHHHHH
Q 038200 151 RDLISWNSIVSGHVRSGDMSAAHELFDIMPER-NVVSWNIMISGYSK----SGNPGCSLKLFREMMKSGFRGNDKTMASV 225 (523)
Q Consensus 151 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~~~~p~~~~~~~l 225 (523)
.+..++..+...+...|++++|...|++..++ +..++..+...|.. .+++++|...|++..+.+ +...+..+
T Consensus 4 ~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l 80 (273)
T 1ouv_A 4 QDPKELVGLGAKSYKEKDFTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHLL 80 (273)
T ss_dssp -CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHHHH
Confidence 35667888888999999999999999988764 56788889999999 999999999999999876 67788888
Q ss_pred HHHHhc----cccHHHHHHHHHHHHHcCCCCchHHHHHHhhhhhhcCChHHHHHHHHhcCCCChHHHHHHHHHHHhcCCh
Q 038200 226 LTACGR----SARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKP 301 (523)
Q Consensus 226 l~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~ 301 (523)
...+.. .+++++|...|++..+.+ +...+..+...|... ....+++
T Consensus 81 g~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~---------------------------~~~~~~~ 130 (273)
T 1ouv_A 81 GNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDG---------------------------KVVTRDF 130 (273)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHC---------------------------SSSCCCH
T ss_pred HHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcC---------------------------CCcccCH
Confidence 888888 899999999998887754 445555555555540 0004444
Q ss_pred HHHHHHHHHHHhCCCCCCCcCCCHHHHHHHHHHHhh----cCcHHHHHHHHHHhhHhcCCCCChHHHHHHHHHHHc----
Q 038200 302 EEGIKLFTALVNGTVAGGSISPDEITFIGVICACVR----AELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAG---- 373 (523)
Q Consensus 302 ~~a~~~~~~m~~~~~~~~~~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---- 373 (523)
++|+..|++..+.+ +...+..+...|.. .+++++|...|++..+. + ++..+..+...|..
T Consensus 131 ~~A~~~~~~a~~~~--------~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~-~---~~~a~~~lg~~~~~g~~~ 198 (273)
T 1ouv_A 131 KKAVEYFTKACDLN--------DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDL-K---DSPGCFNAGNMYHHGEGA 198 (273)
T ss_dssp HHHHHHHHHHHHTT--------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHTCSS
T ss_pred HHHHHHHHHHHhcC--------cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC-C---CHHHHHHHHHHHHcCCCC
Confidence 55555555444432 23334444444444 55666666666655552 1 34455555666666
Q ss_pred CCChHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHh----cCCHHHHHHHHHHHhhcCCC
Q 038200 374 AELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRF----QGAVAMVERLAKSFVDMDPQ 430 (523)
Q Consensus 374 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~p~ 430 (523)
.+++++|.+.+++..+. .| ...+..+...+.. .+++++|...++++.+.+|+
T Consensus 199 ~~~~~~A~~~~~~a~~~----~~-~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~~ 254 (273)
T 1ouv_A 199 TKNFKEALARYSKACEL----EN-GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAK 254 (273)
T ss_dssp CCCHHHHHHHHHHHHHT----TC-HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCH
T ss_pred CccHHHHHHHHHHHHhC----CC-HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcCCH
Confidence 66666666666665532 11 3344555555555 66677777777777666664
No 58
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.57 E-value=3.6e-13 Score=124.24 Aligned_cols=249 Identities=10% Similarity=0.010 Sum_probs=173.7
Q ss_pred HHHHHHHHHHHHcCCCCchHHHHHHhhhhh-------hcCCh-------HHHHHHHHhcCC---C-ChHHHHHHHHHHHh
Q 038200 236 NEGRSVHGYTVRTSLKPNIILDTALIDLYS-------KCQKV-------EVAQRVFDSMAD---R-NLVCWNAMILGHCI 297 (523)
Q Consensus 236 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-------~~~~~-------~~a~~~~~~~~~---~-~~~~~~~li~~~~~ 297 (523)
++|..+|+++++.. +.+..+|..++..+. ..|++ ++|..+|++..+ | +...|..++..+..
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 45666666666643 335556665555554 34665 778887777643 2 44578888888888
Q ss_pred cCChHHHHHHHHHHHhCCCCCCCcCCC-HH-HHHHHHHHHhhcCcHHHHHHHHHHhhHhcCCCCChHHHHHHHHHHH-cC
Q 038200 298 HGKPEEGIKLFTALVNGTVAGGSISPD-EI-TFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYA-GA 374 (523)
Q Consensus 298 ~g~~~~a~~~~~~m~~~~~~~~~~~p~-~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~ 374 (523)
.|++++|..+|+++++. .|+ .. .|..++..+.+.|++++|..+|+++.+. .+++...|...+.... ..
T Consensus 112 ~~~~~~A~~~~~~al~~-------~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~p~~~~~~~~~a~~~~~~~ 182 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAI-------EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED--ARTRHHVYVTAALMEYYCS 182 (308)
T ss_dssp TTCHHHHHHHHHHHHTS-------SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTS--TTCCTHHHHHHHHHHHHTS
T ss_pred cCCHHHHHHHHHHHHhc-------cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHHc
Confidence 88888888888888873 454 33 6777888888888888888888888763 2344555544433322 36
Q ss_pred CChHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHhhc---CCC-ChhhHHHHHHHHHhcCChhH
Q 038200 375 ELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDM---DPQ-DFSRYQFLLNVYAVAGQWED 450 (523)
Q Consensus 375 g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~p~-~~~~~~~l~~~~~~~g~~~~ 450 (523)
|++++|.++|+++.+. .+.+...|..++..+...|+.++|..+|+++++. .|+ ....|..++..+.+.|+.++
T Consensus 183 ~~~~~A~~~~~~al~~---~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~ 259 (308)
T 2ond_A 183 KDKSVAFKIFELGLKK---YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLAS 259 (308)
T ss_dssp CCHHHHHHHHHHHHHH---HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHH
T ss_pred CCHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 8888888888888753 2335677788888888888999999999988885 443 56688888888888899999
Q ss_pred HHHHHHHHHhCCCccCCceeEEEeCCeEEEEecCCCCchHHHHHHHHHHhcccCCcccccccccc
Q 038200 451 VARVRELMKKRRMGRMPGCRLVDLKEVVEKLKVGHFWRGGMKEEVNKMMECRQSRSLATVSKQLP 515 (523)
Q Consensus 451 A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 515 (523)
|..+++++.+......... ....+...-+++...|+++.++++.||+
T Consensus 260 a~~~~~~a~~~~p~~~~~~------------------~~~~~~~r~~~l~~~P~~~~~ln~lgY~ 306 (308)
T 2ond_A 260 ILKVEKRRFTAFREEYEGK------------------ETALLVDRYKFMDLYPCSASELKALGYK 306 (308)
T ss_dssp HHHHHHHHHHHTTTTTSSC------------------HHHHHHTTTCBTTBCSSCHHHHHTTTCC
T ss_pred HHHHHHHHHHHcccccccc------------------hHHHHHHHHHhcccCCCCHHHHHhcCCC
Confidence 9988888877542211110 1133344447888999999999999997
No 59
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.57 E-value=8.2e-14 Score=131.38 Aligned_cols=229 Identities=10% Similarity=0.079 Sum_probs=195.5
Q ss_pred HHHHHHHHHHHhccccHHHHHHHHHHHHHcCCCCchHHHHHHhhhhhhcCC-hHHHHHHHHhcCC---CChHHHHHHHHH
Q 038200 219 DKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQK-VEVAQRVFDSMAD---RNLVCWNAMILG 294 (523)
Q Consensus 219 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~---~~~~~~~~li~~ 294 (523)
...|..+..++...|++++|...++++++.. +-+..+|+.+..++...|+ +++|+..|+++.+ .+...|..+..+
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~ 175 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVL 175 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 3567778888899999999999999999975 3368899999999999997 9999999999854 467899999999
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCCCcCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhHhcCCCCChHHHHHHHHHHHc-
Q 038200 295 HCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAG- 373 (523)
Q Consensus 295 ~~~~g~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~- 373 (523)
+...|++++|+..|++++... +-+...|..+..++...|++++|+..++++.+. -+-+...|+.+..++..
T Consensus 176 ~~~~g~~~eAl~~~~kal~ld------P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l--~P~~~~a~~~lg~~l~~l 247 (382)
T 2h6f_A 176 VEWLRDPSQELEFIADILNQD------AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE--DVRNNSVWNQRYFVISNT 247 (382)
T ss_dssp HHHHTCCTTHHHHHHHHHHHC------TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH--CTTCHHHHHHHHHHHHHT
T ss_pred HHHccCHHHHHHHHHHHHHhC------ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHh
Confidence 999999999999999999954 335778999999999999999999999999984 34468899999999999
Q ss_pred CCChHHH-----HHHHHhCCCCCCCCCc-hHHHHHHHHHHHHhcC--CHHHHHHHHHHHhhcCCCChhhHHHHHHHHHhc
Q 038200 374 AELTEEA-----EEILRKMPEDNDNMSF-ESIMWVSLLSLCRFQG--AVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVA 445 (523)
Q Consensus 374 ~g~~~~A-----~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g--~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 445 (523)
.|..++| ++.+++.++. .| +...|..+...+...| ++++|...++++ +.+|+++.++..++.+|.+.
T Consensus 248 ~~~~~eA~~~~el~~~~~Al~l----~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~ 322 (382)
T 2h6f_A 248 TGYNDRAVLEREVQYTLEMIKL----VPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDM 322 (382)
T ss_dssp TCSCSHHHHHHHHHHHHHHHHH----STTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHH
T ss_pred cCcchHHHHHHHHHHHHHHHHH----CCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHH
Confidence 6665777 5888888753 44 5678888888888888 689999999998 89999999999999999987
Q ss_pred C---------ChhHHHHHHHHH-HhC
Q 038200 446 G---------QWEDVARVRELM-KKR 461 (523)
Q Consensus 446 g---------~~~~A~~~~~~m-~~~ 461 (523)
| .+++|+++++++ .+.
T Consensus 323 ~~~~~~~~~~~~~~A~~~~~~l~~~~ 348 (382)
T 2h6f_A 323 LENQCDNKEDILNKALELCEILAKEK 348 (382)
T ss_dssp HHTTCSSHHHHHHHHHHHHHHHHHTT
T ss_pred hcccccchHHHHHHHHHHHHHHHHHh
Confidence 5 358999999998 453
No 60
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.57 E-value=2.9e-14 Score=133.11 Aligned_cols=274 Identities=12% Similarity=0.006 Sum_probs=198.0
Q ss_pred HHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCC----HHHHHHHHHHHhccccHHHHHHHHHHHHHc----CCCC-chHH
Q 038200 186 SWNIMISGYSKSGNPGCSLKLFREMMKSGFRGN----DKTMASVLTACGRSARFNEGRSVHGYTVRT----SLKP-NIIL 256 (523)
Q Consensus 186 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~ 256 (523)
.+......+...|++++|..+|+++.+.. +.+ ...+..+...+...|++++|...++++.+. +..+ ...+
T Consensus 7 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 85 (338)
T 3ro2_A 7 ELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKA 85 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHH
Confidence 34455667778888888888888887753 222 356677777888888888888888776543 2122 2456
Q ss_pred HHHHhhhhhhcCChHHHHHHHHhcCC-----CC----hHHHHHHHHHHHhcCC--------------------hHHHHHH
Q 038200 257 DTALIDLYSKCQKVEVAQRVFDSMAD-----RN----LVCWNAMILGHCIHGK--------------------PEEGIKL 307 (523)
Q Consensus 257 ~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~----~~~~~~li~~~~~~g~--------------------~~~a~~~ 307 (523)
+..+...|...|++++|...+++..+ ++ ..++..+...|...|+ +++|...
T Consensus 86 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~ 165 (338)
T 3ro2_A 86 SGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDL 165 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHH
Confidence 77788888888888888888877643 12 2367778888888888 8888888
Q ss_pred HHHHHhCCCCCCCcCC-CHHHHHHHHHHHhhcCcHHHHHHHHHHhhHhcCCCCC----hHHHHHHHHHHHcCCChHHHHH
Q 038200 308 FTALVNGTVAGGSISP-DEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPN----FAHYWCMANLYAGAELTEEAEE 382 (523)
Q Consensus 308 ~~~m~~~~~~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~ 382 (523)
+++......... ..| ...++..+...+...|++++|...+++..+...-.++ ..++..+...+...|++++|.+
T Consensus 166 ~~~a~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 244 (338)
T 3ro2_A 166 YEENLSLVTALG-DRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASE 244 (338)
T ss_dssp HHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 887654210000 111 2346778888899999999999999988763111112 3478888999999999999999
Q ss_pred HHHhCCCCCC--CCCc-hHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCC------ChhhHHHHHHHHHhcCChhHHHH
Q 038200 383 ILRKMPEDND--NMSF-ESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQ------DFSRYQFLLNVYAVAGQWEDVAR 453 (523)
Q Consensus 383 ~~~~~~~~~~--~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~------~~~~~~~l~~~~~~~g~~~~A~~ 453 (523)
.+++..+... +..+ ...++..+...+...|++++|...++++.+..+. ...++..++.+|...|++++|..
T Consensus 245 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 324 (338)
T 3ro2_A 245 YYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMH 324 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHH
Confidence 9988763210 0111 1556777888899999999999999999875442 24578899999999999999999
Q ss_pred HHHHHHhC
Q 038200 454 VRELMKKR 461 (523)
Q Consensus 454 ~~~~m~~~ 461 (523)
.+++..+.
T Consensus 325 ~~~~a~~~ 332 (338)
T 3ro2_A 325 FAEKHLEI 332 (338)
T ss_dssp HHHHHHHC
T ss_pred HHHHHHHH
Confidence 99998764
No 61
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.57 E-value=3.4e-13 Score=114.07 Aligned_cols=168 Identities=8% Similarity=0.077 Sum_probs=144.4
Q ss_pred ChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhHhcCCCCChHH
Q 038200 284 NLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAH 363 (523)
Q Consensus 284 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 363 (523)
++..|..+...|...|++++|+..|++.++.. +-+..++..+..++.+.|++++|...++..... .+.+...
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~------p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~ 75 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD------PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVL--DTTSAEA 75 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCCHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CchhHHH
Confidence 56778889999999999999999999998843 234678888889999999999999999999874 4446777
Q ss_pred HHHHHHHHHcCCChHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhhHHHHHHHHH
Q 038200 364 YWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYA 443 (523)
Q Consensus 364 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 443 (523)
+..+...+...++++.|.+.+.+.... .+.+...+..+...+...|++++|...++++++.+|.++.++..++.+|.
T Consensus 76 ~~~~~~~~~~~~~~~~a~~~~~~a~~~---~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~ 152 (184)
T 3vtx_A 76 YYILGSANFMIDEKQAAIDALQRAIAL---NTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYE 152 (184)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh---CccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHH
Confidence 888888999999999999999988753 23456778888888999999999999999999999999999999999999
Q ss_pred hcCChhHHHHHHHHHHhCC
Q 038200 444 VAGQWEDVARVRELMKKRR 462 (523)
Q Consensus 444 ~~g~~~~A~~~~~~m~~~~ 462 (523)
+.|++++|+..|++..+..
T Consensus 153 ~~g~~~~A~~~~~~al~~~ 171 (184)
T 3vtx_A 153 GKGLRDEAVKYFKKALEKE 171 (184)
T ss_dssp HTTCHHHHHHHHHHHHHTT
T ss_pred HCCCHHHHHHHHHHHHhCC
Confidence 9999999999999987653
No 62
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.55 E-value=2.1e-14 Score=138.10 Aligned_cols=261 Identities=12% Similarity=0.055 Sum_probs=166.2
Q ss_pred HHHHHHHHHHhcCCchHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHhccccHHHHHHHHHHHHHcCC----CC-chH
Q 038200 186 SWNIMISGYSKSGNPGCSLKLFREMMKS----GFRG-NDKTMASVLTACGRSARFNEGRSVHGYTVRTSL----KP-NII 255 (523)
Q Consensus 186 ~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~----~~-~~~ 255 (523)
.|..+...+...|++++|...+++..+. +..| ...++..+..++...|++++|...++++.+... .+ ...
T Consensus 49 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 128 (406)
T 3sf4_A 49 IYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEAR 128 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHH
Confidence 3445555555555555555555544321 1111 123444555555555666666555555443210 00 123
Q ss_pred HHHHHhhhhhhcCC--------------------hHHHHHHHHhcCC-----C----ChHHHHHHHHHHHhcCChHHHHH
Q 038200 256 LDTALIDLYSKCQK--------------------VEVAQRVFDSMAD-----R----NLVCWNAMILGHCIHGKPEEGIK 306 (523)
Q Consensus 256 ~~~~l~~~~~~~~~--------------------~~~a~~~~~~~~~-----~----~~~~~~~li~~~~~~g~~~~a~~ 306 (523)
++..+...|...|+ +++|...+++..+ . ...++..+...|...|++++|..
T Consensus 129 ~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 208 (406)
T 3sf4_A 129 ALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVI 208 (406)
T ss_dssp HHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHH
T ss_pred HHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHH
Confidence 45555556666666 6666665554422 1 13467778888888999999999
Q ss_pred HHHHHHhCCCCCCCcCCC----HHHHHHHHHHHhhcCcHHHHHHHHHHhhHhcCCCCC----hHHHHHHHHHHHcCCChH
Q 038200 307 LFTALVNGTVAGGSISPD----EITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPN----FAHYWCMANLYAGAELTE 378 (523)
Q Consensus 307 ~~~~m~~~~~~~~~~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~ 378 (523)
.+++...... -.++ ..++..+...+...|++++|...+++..+...-.++ ..++..+...|...|+++
T Consensus 209 ~~~~al~~~~----~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 284 (406)
T 3sf4_A 209 AHEQRLLIAK----EFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYE 284 (406)
T ss_dssp HHHHHHHHHH----HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHH----hcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHH
Confidence 8888775320 0112 237788888899999999999999988753111111 567788899999999999
Q ss_pred HHHHHHHhCCCCCC--CCCc-hHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcC------CCChhhHHHHHHHHHhcCChh
Q 038200 379 EAEEILRKMPEDND--NMSF-ESIMWVSLLSLCRFQGAVAMVERLAKSFVDMD------PQDFSRYQFLLNVYAVAGQWE 449 (523)
Q Consensus 379 ~A~~~~~~~~~~~~--~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~------p~~~~~~~~l~~~~~~~g~~~ 449 (523)
+|.+.+++..+... +..+ ...++..+...+...|++++|...++++.++. +....++..++.+|...|+..
T Consensus 285 ~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 364 (406)
T 3sf4_A 285 KAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSY 364 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhH
Confidence 99999988763210 0111 25577778888999999999999999998753 223567888999998888764
Q ss_pred H
Q 038200 450 D 450 (523)
Q Consensus 450 ~ 450 (523)
.
T Consensus 365 ~ 365 (406)
T 3sf4_A 365 S 365 (406)
T ss_dssp C
T ss_pred H
Confidence 3
No 63
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.55 E-value=5.8e-14 Score=137.52 Aligned_cols=209 Identities=6% Similarity=0.029 Sum_probs=175.6
Q ss_pred HHHHHHHHHHHHHcCCCCchHHHHHHhhhhhhcCCh-HHHHHHHHhcCC---CChHHHHHHHHHHHhcCChHHHHHHHHH
Q 038200 235 FNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKV-EVAQRVFDSMAD---RNLVCWNAMILGHCIHGKPEEGIKLFTA 310 (523)
Q Consensus 235 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~ 310 (523)
++++...++...... +.+...+..+..+|...|++ ++|++.|++..+ .+...|..+...|...|++++|...|++
T Consensus 84 ~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~ 162 (474)
T 4abn_A 84 MEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSG 162 (474)
T ss_dssp HHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 455555565544432 33567777778888888888 888888877643 3567889999999999999999999999
Q ss_pred HHhCCCCCCCcCCCHHHHHHHHHHHhhc---------CcHHHHHHHHHHhhHhcCCCCChHHHHHHHHHHHcC-------
Q 038200 311 LVNGTVAGGSISPDEITFIGVICACVRA---------ELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGA------- 374 (523)
Q Consensus 311 m~~~~~~~~~~~p~~~~~~~ll~~~~~~---------~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~------- 374 (523)
..+ ..|+...+..+...+... |++++|...|+++.+. .+.+...|..+..+|...
T Consensus 163 al~-------~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~~~ 233 (474)
T 4abn_A 163 ALT-------HCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQM--DVLDGRSWYILGNAYLSLYFNTGQN 233 (474)
T ss_dssp HHT-------TCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHh-------hCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHhhccc
Confidence 998 458888889999999999 9999999999999984 344688899999999988
Q ss_pred -CChHHHHHHHHhCCCCCCCCCc----hHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChh
Q 038200 375 -ELTEEAEEILRKMPEDNDNMSF----ESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWE 449 (523)
Q Consensus 375 -g~~~~A~~~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 449 (523)
|++++|++.|++..+. .| +...+..+..++...|++++|...++++.+++|+++.++..++.++...|+++
T Consensus 234 ~g~~~~A~~~~~~al~~----~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~ 309 (474)
T 4abn_A 234 PKISQQALSAYAQAEKV----DRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLT 309 (474)
T ss_dssp HHHHHHHHHHHHHHHHH----CGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHh----CCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHH
Confidence 9999999999999853 44 67888999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHH
Q 038200 450 DVARVREL 457 (523)
Q Consensus 450 ~A~~~~~~ 457 (523)
+|+..+++
T Consensus 310 eAi~~~~~ 317 (474)
T 4abn_A 310 SLLESKGK 317 (474)
T ss_dssp HHHHHTTT
T ss_pred HHHHHhcc
Confidence 99976543
No 64
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.54 E-value=3.7e-14 Score=128.55 Aligned_cols=243 Identities=12% Similarity=-0.024 Sum_probs=152.5
Q ss_pred hCCCchHHHHHHHHHHHCCCC---CCcccHHHHHHHHHccCCchHHHHHHHHHHHhCCCCCchHHHHHHHHHHccCChHH
Q 038200 64 NSCVPDQGVVFYLQMIKNGFM---PNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDC 140 (523)
Q Consensus 64 ~~~~~~~a~~~~~~m~~~~~~---p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 140 (523)
..|++++|+..|+++.+.... .+..++..+...+...|++++|...++.+++..+. +..++..+..+|...|++++
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~~~~~~ 95 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPD-MPEVFNYLGIYLTQAGNFDA 95 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCHHH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHccCHHH
Confidence 346667777777777664211 12345666666667777777777777777666433 55666666666666666666
Q ss_pred HHHHHhhcCCCCcchHHHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHH
Q 038200 141 ARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDK 220 (523)
Q Consensus 141 A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~ 220 (523)
|.+.|++.... ...+..+|..+..+|...|++++|...|+++.+. .|+..
T Consensus 96 A~~~~~~al~~----------------------------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~ 145 (275)
T 1xnf_A 96 AYEAFDSVLEL----------------------------DPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDP 145 (275)
T ss_dssp HHHHHHHHHHH----------------------------CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCH
T ss_pred HHHHHHHHHhc----------------------------CccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCCh
Confidence 66555554210 0124566777777777777788888777777764 34444
Q ss_pred HHHHHHHHHhccccHHHHHHHHHHHHHcCCCCchHHHHHHhhhhhhcCChHHHHHHHHhcCCCC-------hHHHHHHHH
Q 038200 221 TMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRN-------LVCWNAMIL 293 (523)
Q Consensus 221 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-------~~~~~~li~ 293 (523)
.....+..+...|++++|...+....... +++...+. ++..+...++.++|...+++..+.+ ...+..+..
T Consensus 146 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~ 223 (275)
T 1xnf_A 146 FRSLWLYLAEQKLDEKQAKEVLKQHFEKS-DKEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGK 223 (275)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHHS-CCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CcchHHHH-HHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHH
Confidence 44444455566678888888887776653 23333333 5666667777788888888776532 356777888
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCCCCcCCCHHHHHHHHHHHhhcCcHHHHHHHH
Q 038200 294 GHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYF 348 (523)
Q Consensus 294 ~~~~~g~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 348 (523)
.|...|++++|...|++.... .|+. +.....++...|++++|++.+
T Consensus 224 ~~~~~g~~~~A~~~~~~al~~-------~p~~--~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 224 YYLSLGDLDSATALFKLAVAN-------NVHN--FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp HHHHTTCHHHHHHHHHHHHTT-------CCTT--CHHHHHHHHHHHHHHHC----
T ss_pred HHHHcCCHHHHHHHHHHHHhC-------Cchh--HHHHHHHHHHHHHHHhhHHHH
Confidence 888888888888888888874 3532 122244566677777777654
No 65
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.51 E-value=1.2e-12 Score=126.23 Aligned_cols=284 Identities=10% Similarity=0.006 Sum_probs=144.7
Q ss_pred HHHHHHHHHccCCchHHHHHHHHHHHhCCCCCc----hHHHHHHHHHHccCChHHHHHHHhhcCCCCcchHHHHHHHHHh
Q 038200 90 FVSLFGSCAKTGCVERGGMCHGLALKNGVDFEL----PVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVR 165 (523)
Q Consensus 90 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~ 165 (523)
+..+...+...|++++|...++.+++.++. +. .++..+..+|...|++++|...+++.
T Consensus 51 l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a----------------- 112 (411)
T 4a1s_A 51 LALEGERLCNAGDCRAGVAFFQAAIQAGTE-DLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHD----------------- 112 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH-----------------
T ss_pred HHHHHHHHHHhCcHHHHHHHHHHHHHhccc-ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHH-----------------
Confidence 334455566677777777777777776432 22 35666666677777777776666553
Q ss_pred cCCHHHHHHHHhcCCC--CChhHHHHHHHHHHhcCCchHHHHHHHHHHHCC-----CCCCHHHHHHHHHHHhcccc----
Q 038200 166 SGDMSAAHELFDIMPE--RNVVSWNIMISGYSKSGNPGCSLKLFREMMKSG-----FRGNDKTMASVLTACGRSAR---- 234 (523)
Q Consensus 166 ~~~~~~a~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~-----~~p~~~~~~~ll~~~~~~~~---- 234 (523)
+++.+.... ....++..+...|...|++++|...+++..+.. ......++..+...+...|+
T Consensus 113 -------l~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~ 185 (411)
T 4a1s_A 113 -------LTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQ 185 (411)
T ss_dssp -------HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -------HHHHHHccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCccccc
Confidence 222222211 123556777777888888888888877765531 11123466667777777777
Q ss_pred -------------HHHHHHHHHHHHHc----CCCC-chHHHHHHhhhhhhcCChHHHHHHHHhcCCCChHHHHHHHHHHH
Q 038200 235 -------------FNEGRSVHGYTVRT----SLKP-NIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHC 296 (523)
Q Consensus 235 -------------~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~ 296 (523)
+++|...+++..+. +..+ ...++..+...|...|++++|+..|++
T Consensus 186 ~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~----------------- 248 (411)
T 4a1s_A 186 RNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQE----------------- 248 (411)
T ss_dssp HSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH-----------------
T ss_pred ccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHH-----------------
Confidence 66666666554432 1111 123444444445555555555554444
Q ss_pred hcCChHHHHHHHHHHHhCCCCCCCcCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhHhcCCC----CChHHHHHHHHHHH
Q 038200 297 IHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIK----PNFAHYWCMANLYA 372 (523)
Q Consensus 297 ~~g~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~----~~~~~~~~l~~~~~ 372 (523)
................++..+...+...|++++|...+++..+...-. ....++..+...|.
T Consensus 249 --------------al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~ 314 (411)
T 4a1s_A 249 --------------RLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYT 314 (411)
T ss_dssp --------------HHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred --------------HHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 333110000000001244445555555555555555554444321000 01344455555555
Q ss_pred cCCChHHHHHHHHhCCCCCCC---CCchHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCC
Q 038200 373 GAELTEEAEEILRKMPEDNDN---MSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDP 429 (523)
Q Consensus 373 ~~g~~~~A~~~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p 429 (523)
..|++++|.+.+++..+.... ......++..+...+...|++++|...++++.++.+
T Consensus 315 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 374 (411)
T 4a1s_A 315 LLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQLAX 374 (411)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred HcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHh
Confidence 555555555555554321000 011133455555566666666666666666666544
No 66
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.49 E-value=1.1e-10 Score=117.49 Aligned_cols=408 Identities=10% Similarity=-0.018 Sum_probs=282.2
Q ss_pred CCCcccHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCcccHHHHHHHHHccCC---chHHHHHHHHHHHhCC-CCCchH
Q 038200 49 NPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGC---VERGGMCHGLALKNGV-DFELPV 124 (523)
Q Consensus 49 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~---~~~a~~~~~~~~~~~~-~~~~~~ 124 (523)
+.|..+|..++..+.+.+.++.+..+|+.+... ++.....|...+..-.+.++ ++.+..+|++.+...+ +|++..
T Consensus 63 p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv~L 141 (679)
T 4e6h_A 63 PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDLSL 141 (679)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCHHH
T ss_pred cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCHHH
Confidence 458889999999999999999999999999986 46666788888888888888 9999999999988642 478889
Q ss_pred HHHHHHHHHccCCh--------HHHHHHHhhcC------CC-CcchHHHHHHHHH---------hcCCHHHHHHHHhcCC
Q 038200 125 MNSLINMYGCFGAM--------DCARNMFVQMS------PR-DLISWNSIVSGHV---------RSGDMSAAHELFDIMP 180 (523)
Q Consensus 125 ~~~l~~~~~~~g~~--------~~A~~~~~~~~------~~-~~~~~~~ll~~~~---------~~~~~~~a~~~~~~~~ 180 (523)
|...+....+.++. +.+.++|+... .+ +...|...+.... ..++++.+..+|++..
T Consensus 142 W~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~raL 221 (679)
T 4e6h_A 142 WLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLL 221 (679)
T ss_dssp HHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHHH
Confidence 99888876665543 33456776632 22 3457777776543 2345788999999887
Q ss_pred C-CC---hhHHHHH---HHHH----------HhcCCchHHHHHHHHHHHC--CC----C-----------C-----C---
Q 038200 181 E-RN---VVSWNIM---ISGY----------SKSGNPGCSLKLFREMMKS--GF----R-----------G-----N--- 218 (523)
Q Consensus 181 ~-~~---~~~~~~l---i~~~----------~~~~~~~~a~~~~~~m~~~--~~----~-----------p-----~--- 218 (523)
. |. ..+|... .... -...+++.|...+.++... ++ + | +
T Consensus 222 ~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~q 301 (679)
T 4e6h_A 222 CQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQ 301 (679)
T ss_dssp TSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHH
T ss_pred hCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhccCCCCchhHHHH
Confidence 5 32 1233222 1111 0011233444455443221 11 0 1 0
Q ss_pred HHHHHHHHHHHhccc-------cHHHHHHHHHHHHHcCCCCchHHHHHHhhhhhhcCChHHHH-HHHHhcCC---CChHH
Q 038200 219 DKTMASVLTACGRSA-------RFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQ-RVFDSMAD---RNLVC 287 (523)
Q Consensus 219 ~~~~~~ll~~~~~~~-------~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~-~~~~~~~~---~~~~~ 287 (523)
...|...+.---..+ ..+.+..+|++++.. ++....+|-..+..+...|+.++|. .+|++... .+...
T Consensus 302 l~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~L 380 (679)
T 4e6h_A 302 LLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH-VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVL 380 (679)
T ss_dssp HHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHH
Confidence 123333333222221 133456778888876 3457788888888888889999996 99988754 35567
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC----CcCCC------------HHHHHHHHHHHhhcCcHHHHHHHHHHh
Q 038200 288 WNAMILGHCIHGKPEEGIKLFTALVNGTVAGG----SISPD------------EITFIGVICACVRAELLTEGRKYFRQM 351 (523)
Q Consensus 288 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~----~~~p~------------~~~~~~ll~~~~~~~~~~~a~~~~~~~ 351 (523)
|...+......|+++.|.++|++++....... .-.|+ ...|...+....+.|..+.|..+|.++
T Consensus 381 wl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A 460 (679)
T 4e6h_A 381 AFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKC 460 (679)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 88888888999999999999999986310000 00132 235777777778889999999999999
Q ss_pred hHhcCCCCChHHHHHHHHHHHcCC-ChHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCC
Q 038200 352 IDFYKIKPNFAHYWCMANLYAGAE-LTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQ 430 (523)
Q Consensus 352 ~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 430 (523)
.+. ...+....|...+..-.+.+ +.+.|.++|+..++. ++.+...|...+......|+.+.|..+|++++...|+
T Consensus 461 ~~~-~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~---~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~ 536 (679)
T 4e6h_A 461 RRL-KKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKY---FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISD 536 (679)
T ss_dssp HHT-GGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH---HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSS
T ss_pred HHh-cCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH---CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCC
Confidence 873 12223455554444444554 589999999999864 4445667778888888899999999999999997773
Q ss_pred ---ChhhHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 038200 431 ---DFSRYQFLLNVYAVAGQWEDVARVRELMKKRR 462 (523)
Q Consensus 431 ---~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 462 (523)
....|...+..-.+.|+.+.+.++.+++.+..
T Consensus 537 ~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~ 571 (679)
T 4e6h_A 537 SHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKF 571 (679)
T ss_dssp TTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 45678888888889999999999999998874
No 67
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.48 E-value=1.7e-11 Score=112.96 Aligned_cols=223 Identities=9% Similarity=0.071 Sum_probs=171.7
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHh-------ccccH-------HHHHHHHHHHHHcCCCCchHHHHHHhhhhhh
Q 038200 201 GCSLKLFREMMKSGFRGNDKTMASVLTACG-------RSARF-------NEGRSVHGYTVRTSLKPNIILDTALIDLYSK 266 (523)
Q Consensus 201 ~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~-------~~~~~-------~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 266 (523)
++|..+|++.+... +.+...|..++..+. ..|++ ++|..+|++.++.-.+.+...|..++..+..
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 67778888887752 445666666666654 34765 8899999998884123356788889999999
Q ss_pred cCChHHHHHHHHhcCC--C-ChH-HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcCCCHHHHHHHHHHHh-hcCcH
Q 038200 267 CQKVEVAQRVFDSMAD--R-NLV-CWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACV-RAELL 341 (523)
Q Consensus 267 ~~~~~~a~~~~~~~~~--~-~~~-~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~ll~~~~-~~~~~ 341 (523)
.|++++|..+|+++.+ | +.. .|..++..+.+.|++++|..+|++.++.. +++...|........ ..|++
T Consensus 112 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~------p~~~~~~~~~a~~~~~~~~~~ 185 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA------RTRHHVYVTAALMEYYCSKDK 185 (308)
T ss_dssp TTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST------TCCTHHHHHHHHHHHHTSCCH
T ss_pred cCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC------CCCHHHHHHHHHHHHHHcCCH
Confidence 9999999999998755 3 343 79999999999999999999999999854 233444544333322 36999
Q ss_pred HHHHHHHHHhhHhcCCCCChHHHHHHHHHHHcCCChHHHHHHHHhCCCCCCCCCc--hHHHHHHHHHHHHhcCCHHHHHH
Q 038200 342 TEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSF--ESIMWVSLLSLCRFQGAVAMVER 419 (523)
Q Consensus 342 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~ 419 (523)
++|..+|++..+. .+.+...|..++..+.+.|++++|..+|++..... .+.| ....|..++......|+.+.|..
T Consensus 186 ~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-~l~p~~~~~l~~~~~~~~~~~g~~~~a~~ 262 (308)
T 2ond_A 186 SVAFKIFELGLKK--YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSG-SLPPEKSGEIWARFLAFESNIGDLASILK 262 (308)
T ss_dssp HHHHHHHHHHHHH--HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSS-SSCGGGCHHHHHHHHHHHHHHSCHHHHHH
T ss_pred HHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcc-CCCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 9999999999884 34467889999999999999999999999998521 1344 36688888888889999999999
Q ss_pred HHHHHhhcCCCChh
Q 038200 420 LAKSFVDMDPQDFS 433 (523)
Q Consensus 420 ~~~~~~~~~p~~~~ 433 (523)
+++++.+..|+++.
T Consensus 263 ~~~~a~~~~p~~~~ 276 (308)
T 2ond_A 263 VEKRRFTAFREEYE 276 (308)
T ss_dssp HHHHHHHHTTTTTS
T ss_pred HHHHHHHHcccccc
Confidence 99999999997553
No 68
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.48 E-value=6.1e-13 Score=126.93 Aligned_cols=236 Identities=9% Similarity=-0.040 Sum_probs=166.0
Q ss_pred HHHHHhccccHHHHHHHHHHHHHc----CCCC-chHHHHHHhhhhhhcCChHHHHHHHHhcCC-----CC-----hHHHH
Q 038200 225 VLTACGRSARFNEGRSVHGYTVRT----SLKP-NIILDTALIDLYSKCQKVEVAQRVFDSMAD-----RN-----LVCWN 289 (523)
Q Consensus 225 ll~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~-----~~~~~ 289 (523)
....+...|++++|...+++..+. +.++ ...++..+...|...|+++.|...+++..+ ++ ..+++
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 455566778888888888777664 1111 245677777788888888887777776532 11 34678
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhHhc---CC-CCChHHHH
Q 038200 290 AMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFY---KI-KPNFAHYW 365 (523)
Q Consensus 290 ~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~---~~-~~~~~~~~ 365 (523)
.+...|...|++++|...|++..+.....+.......++..+...|...|++++|...+++..+.. +. +....++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 888889999999999999988876320000000112478888899999999999999999887621 22 33467788
Q ss_pred HHHHHHHcCCChHHHHHHHHhCCCCCCCC-Cch-HHHHHHHHHHHHhcCC---HHHHHHHHHHHhhcCCCChhhHHHHHH
Q 038200 366 CMANLYAGAELTEEAEEILRKMPEDNDNM-SFE-SIMWVSLLSLCRFQGA---VAMVERLAKSFVDMDPQDFSRYQFLLN 440 (523)
Q Consensus 366 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~-~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~p~~~~~~~~l~~ 440 (523)
.+...|.+.|++++|.+.+++..+..... .|. ...+..+...+...|+ .++|..++++. ...|....++..++.
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~ 347 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK-MLYADLEDFAIDVAK 347 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC-cCHHHHHHHHHHHHH
Confidence 89999999999999999998876421000 122 2334566667888888 77777777766 233335568889999
Q ss_pred HHHhcCChhHHHHHHHHHHhC
Q 038200 441 VYAVAGQWEDVARVRELMKKR 461 (523)
Q Consensus 441 ~~~~~g~~~~A~~~~~~m~~~ 461 (523)
+|...|++++|...+++..+.
T Consensus 348 ~y~~~g~~~~A~~~~~~al~~ 368 (383)
T 3ulq_A 348 YYHERKNFQKASAYFLKVEQV 368 (383)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHH
Confidence 999999999999999988663
No 69
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.47 E-value=3e-12 Score=119.33 Aligned_cols=197 Identities=8% Similarity=-0.030 Sum_probs=105.9
Q ss_pred HHHHHHHccCCchHHHHHHHHHHHhCCCCC----chHHHHHHHHHHccCChHHHHHHHhhcCCCCcchHHHHHHHHHhcC
Q 038200 92 SLFGSCAKTGCVERGGMCHGLALKNGVDFE----LPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSG 167 (523)
Q Consensus 92 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~ 167 (523)
.....+...|++++|...++.+.+..+. + ..++..+..++...|++++|.+.+++..
T Consensus 10 ~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al------------------ 70 (338)
T 3ro2_A 10 LEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDL------------------ 70 (338)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH------------------
T ss_pred HHHHHHHHhccHHHHHHHHHHHHhhCcc-cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH------------------
Confidence 3344555666777777777776665322 2 2455566666666666666666655531
Q ss_pred CHHHHHHHHhcCCC--CChhHHHHHHHHHHhcCCchHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHhcccc------
Q 038200 168 DMSAAHELFDIMPE--RNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGF-RGN----DKTMASVLTACGRSAR------ 234 (523)
Q Consensus 168 ~~~~a~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~-~p~----~~~~~~ll~~~~~~~~------ 234 (523)
.+...... ....++..+...+...|++++|...+++..+... .++ ..++..+...+...|+
T Consensus 71 ------~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 144 (338)
T 3ro2_A 71 ------TLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPG 144 (338)
T ss_dssp ------HHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSS
T ss_pred ------HHhhcccccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccch
Confidence 11111111 1134566667777777777777777776654210 011 2356666677777777
Q ss_pred --------------HHHHHHHHHHHHHc----CCCC-chHHHHHHhhhhhhcCChHHHHHHHHhcCC-----CC----hH
Q 038200 235 --------------FNEGRSVHGYTVRT----SLKP-NIILDTALIDLYSKCQKVEVAQRVFDSMAD-----RN----LV 286 (523)
Q Consensus 235 --------------~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~----~~ 286 (523)
+++|...+++..+. +..+ ...++..+...+...|++++|...+++..+ ++ ..
T Consensus 145 ~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 224 (338)
T 3ro2_A 145 PQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERR 224 (338)
T ss_dssp CC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred hhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHH
Confidence 67776666655432 1111 123455555566666666666666655432 11 12
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHh
Q 038200 287 CWNAMILGHCIHGKPEEGIKLFTALVN 313 (523)
Q Consensus 287 ~~~~li~~~~~~g~~~~a~~~~~~m~~ 313 (523)
++..+...+...|++++|...+++...
T Consensus 225 ~~~~l~~~~~~~g~~~~A~~~~~~al~ 251 (338)
T 3ro2_A 225 AYSNLGNAYIFLGEFETASEYYKKTLL 251 (338)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 445555555555555555555555443
No 70
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.46 E-value=1.9e-12 Score=109.38 Aligned_cols=169 Identities=11% Similarity=0.013 Sum_probs=119.7
Q ss_pred chHHHHHHhhhhhhcCChHHHHHHHHhcCC---CChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcCCCHHHHH
Q 038200 253 NIILDTALIDLYSKCQKVEVAQRVFDSMAD---RNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFI 329 (523)
Q Consensus 253 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~ 329 (523)
+..+|..+...|...|++++|+..|++..+ .+..+|..+..+|...|++++|...+....... +.+...+.
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~~ 77 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD------TTSAEAYY 77 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------CCCHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC------chhHHHHH
Confidence 445566666666666666666666666533 355667777777777777888877777777643 23455666
Q ss_pred HHHHHHhhcCcHHHHHHHHHHhhHhcCCCCChHHHHHHHHHHHcCCChHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHH
Q 038200 330 GVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCR 409 (523)
Q Consensus 330 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 409 (523)
.+...+...++++.+...+.+..+. .+.+...+..+..+|.+.|++++|++.|++..+. .+.+...+..+..++.
T Consensus 78 ~~~~~~~~~~~~~~a~~~~~~a~~~--~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~---~p~~~~~~~~lg~~~~ 152 (184)
T 3vtx_A 78 ILGSANFMIDEKQAAIDALQRAIAL--NTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISI---KPGFIRAYQSIGLAYE 152 (184)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHhCCchhHHHHHHHHHHh---cchhhhHHHHHHHHHH
Confidence 6667777788888888888887763 3445677777888888888888888888887753 2334667777778888
Q ss_pred hcCCHHHHHHHHHHHhhcCCCCh
Q 038200 410 FQGAVAMVERLAKSFVDMDPQDF 432 (523)
Q Consensus 410 ~~g~~~~a~~~~~~~~~~~p~~~ 432 (523)
..|++++|...++++++++|+++
T Consensus 153 ~~g~~~~A~~~~~~al~~~p~~a 175 (184)
T 3vtx_A 153 GKGLRDEAVKYFKKALEKEEKKA 175 (184)
T ss_dssp HTTCHHHHHHHHHHHHHTTHHHH
T ss_pred HCCCHHHHHHHHHHHHhCCccCH
Confidence 88888888888888888887543
No 71
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.45 E-value=3.3e-13 Score=124.54 Aligned_cols=248 Identities=10% Similarity=0.098 Sum_probs=146.4
Q ss_pred hhHHHHHHHHHHhcCCchHHHHHHHHHHHC-------CCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHc------CC
Q 038200 184 VVSWNIMISGYSKSGNPGCSLKLFREMMKS-------GFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRT------SL 250 (523)
Q Consensus 184 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-------~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~------~~ 250 (523)
..++..+...+...|++++|..+++++.+. ..+.....+..+..++...|++++|...++++.+. +.
T Consensus 27 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 106 (311)
T 3nf1_A 27 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKD 106 (311)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 345666666677777777777777666552 11223344555555666666666666666555432 00
Q ss_pred CCchHHHHHHhhhhhhcCChHHHHHHHHhcCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC-CCcCC-CHHHH
Q 038200 251 KPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAG-GSISP-DEITF 328 (523)
Q Consensus 251 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~-~~~~p-~~~~~ 328 (523)
.| ....++..+...|...|++++|...++++....... ++..| ....+
T Consensus 107 ~~------------------------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 156 (311)
T 3nf1_A 107 HP------------------------------AVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQL 156 (311)
T ss_dssp CH------------------------------HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred Ch------------------------------HHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHH
Confidence 01 122345556666666677777777666665530000 00123 34567
Q ss_pred HHHHHHHhhcCcHHHHHHHHHHhhHhc-----C-CCCChHHHHHHHHHHHcCCChHHHHHHHHhCCCCCC-----CCCc-
Q 038200 329 IGVICACVRAELLTEGRKYFRQMIDFY-----K-IKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDND-----NMSF- 396 (523)
Q Consensus 329 ~~ll~~~~~~~~~~~a~~~~~~~~~~~-----~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-----~~~~- 396 (523)
..+...+...|++++|..+++++.+.. + .+....++..+..+|...|++++|.+.++++.+... ...+
T Consensus 157 ~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 236 (311)
T 3nf1_A 157 NNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDE 236 (311)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcc
Confidence 778888889999999999998887631 1 122356778888999999999999999988773100 0011
Q ss_pred ------hHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 038200 397 ------ESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKR 461 (523)
Q Consensus 397 ------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 461 (523)
....+......+...+.+.++...++......|..+.++..++.+|.+.|++++|.+++++..+.
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l 307 (311)
T 3nf1_A 237 NKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRS 307 (311)
T ss_dssp -CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 11222233334445566677777788888778888889999999999999999999999988653
No 72
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.44 E-value=3.8e-12 Score=121.43 Aligned_cols=233 Identities=6% Similarity=-0.038 Sum_probs=172.1
Q ss_pred HHHHHHhcCCchHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHhccccHHHHHHHHHHHHHcCC--C----CchHHHH
Q 038200 190 MISGYSKSGNPGCSLKLFREMMKS----GFRG-NDKTMASVLTACGRSARFNEGRSVHGYTVRTSL--K----PNIILDT 258 (523)
Q Consensus 190 li~~~~~~~~~~~a~~~~~~m~~~----~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~----~~~~~~~ 258 (523)
....+...|++++|...|++..+. +-.+ ...++..+..++...|+++.|...+.+..+... . ....+++
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 555677788888888888887663 1111 235677788888888888888888887766411 1 1235677
Q ss_pred HHhhhhhhcCChHHHHHHHHhcCC-----CC----hHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCc-CCCHHHH
Q 038200 259 ALIDLYSKCQKVEVAQRVFDSMAD-----RN----LVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSI-SPDEITF 328 (523)
Q Consensus 259 ~l~~~~~~~~~~~~a~~~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~-~p~~~~~ 328 (523)
.+..+|...|++++|+..|++..+ ++ ..++..+...|...|++++|...+++........ +. +....++
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~-~~~~~~~~~~ 267 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEES-NILPSLPQAY 267 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT-TCGGGHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhh-ccchhHHHHH
Confidence 888888899999999888887643 11 2478889999999999999999999987720000 02 2345678
Q ss_pred HHHHHHHhhcCcHHHHHHHHHHhhHhc---CCCCChHHHHHHHHHHHcCCC---hHHHHHHHHhCCCCCCCCCc-hHHHH
Q 038200 329 IGVICACVRAELLTEGRKYFRQMIDFY---KIKPNFAHYWCMANLYAGAEL---TEEAEEILRKMPEDNDNMSF-ESIMW 401 (523)
Q Consensus 329 ~~ll~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~~-~~~~~ 401 (523)
..+...+...|++++|...+++..+.. +.+.....+..+...|...|+ +++|+.++++.. ..| ....+
T Consensus 268 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~-----~~~~~~~~~ 342 (383)
T 3ulq_A 268 FLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKM-----LYADLEDFA 342 (383)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTT-----CHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCc-----CHHHHHHHH
Confidence 889999999999999999999887631 111223345678888999999 899999999985 344 35567
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhcC
Q 038200 402 VSLLSLCRFQGAVAMVERLAKSFVDMD 428 (523)
Q Consensus 402 ~~l~~~~~~~g~~~~a~~~~~~~~~~~ 428 (523)
..+...|...|++++|...++++.++.
T Consensus 343 ~~la~~y~~~g~~~~A~~~~~~al~~~ 369 (383)
T 3ulq_A 343 IDVAKYYHERKNFQKASAYFLKVEQVR 369 (383)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 778888999999999999999998754
No 73
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.43 E-value=6.2e-13 Score=122.71 Aligned_cols=246 Identities=13% Similarity=0.101 Sum_probs=151.2
Q ss_pred CcchHHHHHHHHHhcCCHHHHHHHHhcCCC--------C---ChhHHHHHHHHHHhcCCchHHHHHHHHHHHC------C
Q 038200 152 DLISWNSIVSGHVRSGDMSAAHELFDIMPE--------R---NVVSWNIMISGYSKSGNPGCSLKLFREMMKS------G 214 (523)
Q Consensus 152 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~--------~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~------~ 214 (523)
+..++..+...+...|++++|..+|+++.+ . ...++..+...|...|++++|..++++..+. +
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 105 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK 105 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 346788888999999999999999998764 1 2456888999999999999999999998764 2
Q ss_pred C-CCCHHHHHHHHHHHhccccHHHHHHHHHHHHHc------CCCCchHHHHHHhhhhhhcCChHHHHHHHHhcCCCChHH
Q 038200 215 F-RGNDKTMASVLTACGRSARFNEGRSVHGYTVRT------SLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVC 287 (523)
Q Consensus 215 ~-~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 287 (523)
- +....++..+...+...|++++|...++++.+. +..|. ....
T Consensus 106 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~------------------------------~~~~ 155 (311)
T 3nf1_A 106 DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPD------------------------------VAKQ 155 (311)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHH------------------------------HHHH
T ss_pred CChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChH------------------------------HHHH
Confidence 1 224567888889999999999999999887764 11111 1223
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCC-CCcCCC-HHHHHHHHHHHhhcCcHHHHHHHHHHhhHhc------CCCC
Q 038200 288 WNAMILGHCIHGKPEEGIKLFTALVNGTVAG-GSISPD-EITFIGVICACVRAELLTEGRKYFRQMIDFY------KIKP 359 (523)
Q Consensus 288 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~-~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~------~~~~ 359 (523)
+..+...+...|++++|+.+++++....... ++..|. ..++..+...+...|++++|..+++++.+.. ...+
T Consensus 156 ~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 235 (311)
T 3nf1_A 156 LNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDD 235 (311)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCc
Confidence 4444445555555555555555554420000 001222 3355566666666677777777666665420 0111
Q ss_pred C-------hHHHHHHHHHHHcCCChHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCC
Q 038200 360 N-------FAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQ 430 (523)
Q Consensus 360 ~-------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 430 (523)
. ...+..+...+...+.+.+|...++..... .+....++..+...|...|++++|..++++++++.|.
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 236 ENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVD---SPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ 310 (311)
T ss_dssp --CCHHHHHHHHHHC-------CCSCCCC------------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred chHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCC---CchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence 1 122223333444556666677777776642 2335677888888999999999999999999987764
No 74
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.43 E-value=4.6e-12 Score=129.01 Aligned_cols=164 Identities=13% Similarity=0.112 Sum_probs=144.8
Q ss_pred ChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcCCC-HHHHHHHHHHHhhcCcHHHHHHHHHHhhHhcCCCCChH
Q 038200 284 NLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPD-EITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFA 362 (523)
Q Consensus 284 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 362 (523)
+..+|+.+...|...|++++|++.|++.++. .|+ ..++..+..+|.+.|++++|+..|+++.+. -+-+..
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l-------~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l--~P~~~~ 78 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEV-------FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI--SPTFAD 78 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHH
Confidence 3567888999999999999999999999984 465 678899999999999999999999999874 233578
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHhCCCCCCCCCc-hHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhhHHHHHHH
Q 038200 363 HYWCMANLYAGAELTEEAEEILRKMPEDNDNMSF-ESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNV 441 (523)
Q Consensus 363 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 441 (523)
.|..+..+|...|++++|++.|++.++. .| +...+..+..++...|++++|...++++++++|+++.++..|+.+
T Consensus 79 a~~nLg~~l~~~g~~~~A~~~~~kAl~l----~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~ 154 (723)
T 4gyw_A 79 AYSNMGNTLKEMQDVQGALQCYTRAIQI----NPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHC 154 (723)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhH
Confidence 8999999999999999999999998853 44 477888999999999999999999999999999999999999999
Q ss_pred HHhcCChhHHHHHHHHHHh
Q 038200 442 YAVAGQWEDVARVRELMKK 460 (523)
Q Consensus 442 ~~~~g~~~~A~~~~~~m~~ 460 (523)
|...|++++|.+.+++..+
T Consensus 155 l~~~g~~~~A~~~~~kal~ 173 (723)
T 4gyw_A 155 LQIVCDWTDYDERMKKLVS 173 (723)
T ss_dssp HHHTTCCTTHHHHHHHHHH
T ss_pred HHhcccHHHHHHHHHHHHH
Confidence 9999999999999888754
No 75
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.43 E-value=7.1e-12 Score=105.74 Aligned_cols=164 Identities=12% Similarity=0.076 Sum_probs=121.5
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhHhcCCCCChHHHHH
Q 038200 287 CWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWC 366 (523)
Q Consensus 287 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 366 (523)
.+..+...+...|++++|...++++.... +.+...+..+...+...|++++|...++++.+. .+.+...+..
T Consensus 10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~ 81 (186)
T 3as5_A 10 YYRDKGISHAKAGRYSQAVMLLEQVYDAD------AFDVDVALHLGIAYVKTGAVDRGTELLERSLAD--APDNVKVATV 81 (186)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHTTTCCTT------SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC------ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCHHHHHH
Confidence 45556666777777777777777666542 334566677777777777777777777777763 3345667777
Q ss_pred HHHHHHcCCChHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhhHHHHHHHHHhcC
Q 038200 367 MANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAG 446 (523)
Q Consensus 367 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 446 (523)
+...+...|++++|.+.++++... .+.+...+..+...+...|++++|...++++.+..|.++.++..++.+|...|
T Consensus 82 ~a~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~ 158 (186)
T 3as5_A 82 LGLTYVQVQKYDLAVPLLIKVAEA---NPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMG 158 (186)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhcCHHHHHHHHHHHHhc---CcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcC
Confidence 777777888888888888777643 23456677777778888888888888888888888888888888888888888
Q ss_pred ChhHHHHHHHHHHhC
Q 038200 447 QWEDVARVRELMKKR 461 (523)
Q Consensus 447 ~~~~A~~~~~~m~~~ 461 (523)
++++|...+++..+.
T Consensus 159 ~~~~A~~~~~~~~~~ 173 (186)
T 3as5_A 159 RHEEALPHFKKANEL 173 (186)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHc
Confidence 888888888887664
No 76
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.42 E-value=2e-10 Score=108.94 Aligned_cols=303 Identities=9% Similarity=-0.000 Sum_probs=205.0
Q ss_pred HHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHH----HHHHHHHHHhccccHHHHHHHHHHHHHcCC---CC--chHHHH
Q 038200 188 NIMISGYSKSGNPGCSLKLFREMMKSGFRGNDK----TMASVLTACGRSARFNEGRSVHGYTVRTSL---KP--NIILDT 258 (523)
Q Consensus 188 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~----~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~---~~--~~~~~~ 258 (523)
......+...|++++|...+++........+.. .+..+...+...|++++|...+++..+... .+ ...++.
T Consensus 18 ~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 97 (373)
T 1hz4_A 18 ALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLI 97 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 344556677899999999988887754222222 455666777888999999988888765311 11 123456
Q ss_pred HHhhhhhhcCChHHHHHHHHhcCC-------C----ChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcCCCHHH
Q 038200 259 ALIDLYSKCQKVEVAQRVFDSMAD-------R----NLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEIT 327 (523)
Q Consensus 259 ~l~~~~~~~~~~~~a~~~~~~~~~-------~----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~p~~~~ 327 (523)
.+...+...|++++|...+++..+ + ....+..+...+...|++++|...+++........+ ......+
T Consensus 98 ~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~-~~~~~~~ 176 (373)
T 1hz4_A 98 QQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQ-PQQQLQC 176 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSC-GGGGHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccC-cHHHHHH
Confidence 677888889999999888887632 1 124566788889999999999999999877431100 0112356
Q ss_pred HHHHHHHHhhcCcHHHHHHHHHHhhHhcCCCCChHHHH-----HHHHHHHcCCChHHHHHHHHhCCCCCCCCC-chHHHH
Q 038200 328 FIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYW-----CMANLYAGAELTEEAEEILRKMPEDNDNMS-FESIMW 401 (523)
Q Consensus 328 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-----~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~ 401 (523)
+..+...+...|++++|...+++.............+. ..+..+...|++++|...+++......+.. .....+
T Consensus 177 ~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 256 (373)
T 1hz4_A 177 LAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQW 256 (373)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHH
Confidence 77888889999999999999999876411111111222 233457799999999999999985432211 123355
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhcCCC------ChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCCceeEEEeC
Q 038200 402 VSLLSLCRFQGAVAMVERLAKSFVDMDPQ------DFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLK 475 (523)
Q Consensus 402 ~~l~~~~~~~g~~~~a~~~~~~~~~~~p~------~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~ 475 (523)
..+...+...|++++|...++.+.+..+. ...++..++.+|...|++++|...+++.....-. .+
T Consensus 257 ~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~~~--~g------- 327 (373)
T 1hz4_A 257 RNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANR--TG------- 327 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH--HC-------
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcc--cc-------
Confidence 67777899999999999999998874321 1247778899999999999999999988654211 11
Q ss_pred CeEEEEecCCCCchHHHHHHHHHHhcccC
Q 038200 476 EVVEKLKVGHFWRGGMKEEVNKMMECRQS 504 (523)
Q Consensus 476 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 504 (523)
....|...+ ..+...+++.+...|-
T Consensus 328 -~~~~~~~~g---~~~~~ll~~~~~~~~~ 352 (373)
T 1hz4_A 328 -FISHFVIEG---EAMAQQLRQLIQLNTL 352 (373)
T ss_dssp -CCHHHHTTH---HHHHHHHHHHHHTTCS
T ss_pred -HHHHHHHcc---HHHHHHHHHHHhCCCC
Confidence 111222222 4566677777777664
No 77
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.37 E-value=1.1e-11 Score=121.44 Aligned_cols=208 Identities=7% Similarity=-0.077 Sum_probs=142.0
Q ss_pred HHHHHHHHhcCCC---CChhHHHHHHHHHHhcCCc-hHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHHH
Q 038200 169 MSAAHELFDIMPE---RNVVSWNIMISGYSKSGNP-GCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGY 244 (523)
Q Consensus 169 ~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~-~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 244 (523)
++.+.+.+++... .+...|..+..++...|++ ++|++.|++..+.. +.+...+..+..+|...|++++|...|++
T Consensus 84 ~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~ 162 (474)
T 4abn_A 84 MEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCFSG 162 (474)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 3444444443322 3556667777777777777 77777777776643 23456677777777777777777777777
Q ss_pred HHHcCCCCchHHHHHHhhhhhhc---------CChHHHHHHHHhcCC---CChHHHHHHHHHHHhc--------CChHHH
Q 038200 245 TVRTSLKPNIILDTALIDLYSKC---------QKVEVAQRVFDSMAD---RNLVCWNAMILGHCIH--------GKPEEG 304 (523)
Q Consensus 245 ~~~~~~~~~~~~~~~l~~~~~~~---------~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~--------g~~~~a 304 (523)
+.+.. |+...+..+..+|... |++++|+..|++..+ .+...|..+..+|... |++++|
T Consensus 163 al~~~--p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A 240 (474)
T 4abn_A 163 ALTHC--KNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQA 240 (474)
T ss_dssp HHTTC--CCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHhhC--CCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHHHH
Confidence 77653 4456666777777777 777777777776543 3456677777777776 778888
Q ss_pred HHHHHHHHhCCCCCCCcCC----CHHHHHHHHHHHhhcCcHHHHHHHHHHhhHhcCCCCChHHHHHHHHHHHcCCChHHH
Q 038200 305 IKLFTALVNGTVAGGSISP----DEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEA 380 (523)
Q Consensus 305 ~~~~~~m~~~~~~~~~~~p----~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 380 (523)
+..|++..+. .| +...+..+..+|...|++++|...|+++.+. .+.+...+..+..++...|++++|
T Consensus 241 ~~~~~~al~~-------~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~a~~~l~~~~~~lg~~~eA 311 (474)
T 4abn_A 241 LSAYAQAEKV-------DRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAAL--DPAWPEPQQREQQLLEFLSRLTSL 311 (474)
T ss_dssp HHHHHHHHHH-------CGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHh-------CCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHHHHH
Confidence 8888888773 34 5667777777888888888888888887763 233456677777777777787777
Q ss_pred HHHHHhCC
Q 038200 381 EEILRKMP 388 (523)
Q Consensus 381 ~~~~~~~~ 388 (523)
++.+.++.
T Consensus 312 i~~~~~~~ 319 (474)
T 4abn_A 312 LESKGKTK 319 (474)
T ss_dssp HHHTTTCC
T ss_pred HHHhcccc
Confidence 77665554
No 78
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.36 E-value=6.9e-11 Score=103.61 Aligned_cols=206 Identities=11% Similarity=0.042 Sum_probs=150.5
Q ss_pred CCHHHHHHHHHHHhccccHHHHHHHHHHHHHcCCCCchHHHHHHhhhhhhcCChHHHHHHHHhcCC---CChHHHHHHHH
Q 038200 217 GNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMAD---RNLVCWNAMIL 293 (523)
Q Consensus 217 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~ 293 (523)
.|...+......+...|++++|...|++..+...+++...+..+..++...|++++|+..|++..+ .+...|..+..
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 84 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSA 84 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHH
Confidence 456778888888999999999999999999876546677777788889999999999999888744 34567888888
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCCCCcCCC-H-------HHHHHHHHHHhhcCcHHHHHHHHHHhhHhcCCCCC---hH
Q 038200 294 GHCIHGKPEEGIKLFTALVNGTVAGGSISPD-E-------ITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPN---FA 362 (523)
Q Consensus 294 ~~~~~g~~~~a~~~~~~m~~~~~~~~~~~p~-~-------~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~ 362 (523)
.|...|++++|+..|++..+. .|+ . ..|..+...+...|++++|...|+++.+. .|+ ..
T Consensus 85 ~~~~~~~~~~A~~~~~~al~~-------~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~ 154 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIKA-------VPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV---TSKKWKTD 154 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH-------STTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS---SCHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHH-------CCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc---CCCcccHH
Confidence 899999999999999988884 354 3 34677777788888999999999888762 443 56
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhhHHHHHHHH
Q 038200 363 HYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVY 442 (523)
Q Consensus 363 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 442 (523)
.+..+..+|...|+ .+++++... ...+...+.... ....+.+++|...++++.+++|+++.+...+..+.
T Consensus 155 ~~~~l~~~~~~~~~-----~~~~~a~~~---~~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i~ 224 (228)
T 4i17_A 155 ALYSLGVLFYNNGA-----DVLRKATPL---ASSNKEKYASEK--AKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQVK 224 (228)
T ss_dssp HHHHHHHHHHHHHH-----HHHHHHGGG---TTTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-----HHHHHHHhc---ccCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHH
Confidence 77777777765443 333333321 112222333222 33456689999999999999999887777766553
No 79
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.36 E-value=2e-10 Score=109.18 Aligned_cols=227 Identities=8% Similarity=-0.030 Sum_probs=145.0
Q ss_pred HHHHHHHhcCCchHHHHHHHHHHHCCC-CC----CHHHHHHHHHHHhccccHHHHHHHHHHHHHcCC-----CC-chHHH
Q 038200 189 IMISGYSKSGNPGCSLKLFREMMKSGF-RG----NDKTMASVLTACGRSARFNEGRSVHGYTVRTSL-----KP-NIILD 257 (523)
Q Consensus 189 ~li~~~~~~~~~~~a~~~~~~m~~~~~-~p----~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-----~~-~~~~~ 257 (523)
.....+...|++++|...|++..+... .+ ...++..+..++...|+++.|...+.+..+... .+ ...++
T Consensus 106 ~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 185 (378)
T 3q15_A 106 FRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSL 185 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHH
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHH
Confidence 344556778888888888888765411 12 234667777778888888888888877765311 11 24566
Q ss_pred HHHhhhhhhcCChHHHHHHHHhcCC-----CC----hHHHHHHHHHHHhcCChHHHHHHHHHHHh-----CCCCCCCcCC
Q 038200 258 TALIDLYSKCQKVEVAQRVFDSMAD-----RN----LVCWNAMILGHCIHGKPEEGIKLFTALVN-----GTVAGGSISP 323 (523)
Q Consensus 258 ~~l~~~~~~~~~~~~a~~~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~-----~~~~~~~~~p 323 (523)
+.+..+|...|++++|...|++..+ ++ ..++..+...|...|++++|...|++... .. +.
T Consensus 186 ~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~------~~ 259 (378)
T 3q15_A 186 FVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVP------DL 259 (378)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCG------GG
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCC------hh
Confidence 6777788888888888877776543 11 24667777788888888888888887766 32 22
Q ss_pred CHHHHHHHHHHHhhcCcHHHHHHHHHHhhHhcCC---CCChHHHHHHHHHHHcCCC---hHHHHHHHHhCCCCCCCCCch
Q 038200 324 DEITFIGVICACVRAELLTEGRKYFRQMIDFYKI---KPNFAHYWCMANLYAGAEL---TEEAEEILRKMPEDNDNMSFE 397 (523)
Q Consensus 324 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~ 397 (523)
...++..+...+.+.|++++|...+++..+...- +.....+..+...|...++ +.+|+..+++.. ..|+
T Consensus 260 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~-----~~~~ 334 (378)
T 3q15_A 260 LPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKN-----LHAY 334 (378)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTT-----CHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCC-----ChhH
Confidence 3556777777778888888888888777664211 1113344555556666666 677777777644 2222
Q ss_pred -HHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 038200 398 -SIMWVSLLSLCRFQGAVAMVERLAKSFVD 426 (523)
Q Consensus 398 -~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 426 (523)
...+..+...|...|++++|...++++.+
T Consensus 335 ~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 335 IEACARSAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 33444555566666666666666666654
No 80
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.35 E-value=1.1e-11 Score=117.99 Aligned_cols=237 Identities=7% Similarity=-0.068 Sum_probs=174.4
Q ss_pred HHHHHHHhccccHHHHHHHHHHHHHcCC--C--C-chHHHHHHhhhhhhcCChHHHHHHHHhcCC-----CC-----hHH
Q 038200 223 ASVLTACGRSARFNEGRSVHGYTVRTSL--K--P-NIILDTALIDLYSKCQKVEVAQRVFDSMAD-----RN-----LVC 287 (523)
Q Consensus 223 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~-----~~~ 287 (523)
......+...|++++|...++++.+... + + ...++..+...|...|+++.|...+++..+ ++ ..+
T Consensus 105 ~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 184 (378)
T 3q15_A 105 FFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQS 184 (378)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHH
T ss_pred HHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHH
Confidence 3445567889999999999999886521 1 1 246788899999999999999988887642 12 347
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhHhc---CCCCChHHH
Q 038200 288 WNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFY---KIKPNFAHY 364 (523)
Q Consensus 288 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~ 364 (523)
++.+...|...|++++|.+.|++..+.....+.......++..+...|...|++++|...+++..+.. +.+....++
T Consensus 185 ~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 264 (378)
T 3q15_A 185 LFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVL 264 (378)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHH
Confidence 88899999999999999999998876320000001123477888899999999999999999987721 222336778
Q ss_pred HHHHHHHHcCCChHHHHHHHHhCCCCCC--CCCchHHHHHHHHHHHHhcCC---HHHHHHHHHHHhhcCCCChhhHHHHH
Q 038200 365 WCMANLYAGAELTEEAEEILRKMPEDND--NMSFESIMWVSLLSLCRFQGA---VAMVERLAKSFVDMDPQDFSRYQFLL 439 (523)
Q Consensus 365 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~p~~~~~~~~l~ 439 (523)
..+...|.+.|++++|.+.+++..+... +.+.....+..+...+...|+ ..+|..++++.. ..|.....+..++
T Consensus 265 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~-~~~~~~~~~~~la 343 (378)
T 3q15_A 265 FGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKN-LHAYIEACARSAA 343 (378)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCC-ChhHHHHHHHHHH
Confidence 8899999999999999999998764321 122223455555566777888 777777777632 2233456788999
Q ss_pred HHHHhcCChhHHHHHHHHHHh
Q 038200 440 NVYAVAGQWEDVARVRELMKK 460 (523)
Q Consensus 440 ~~~~~~g~~~~A~~~~~~m~~ 460 (523)
..|...|++++|...|++..+
T Consensus 344 ~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 344 AVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHH
Confidence 999999999999999998754
No 81
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.34 E-value=5.4e-11 Score=100.24 Aligned_cols=169 Identities=9% Similarity=-0.037 Sum_probs=142.5
Q ss_pred hHHHHHHhhhhhhcCChHHHHHHHHhcCC---CChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcCCCHHHHHH
Q 038200 254 IILDTALIDLYSKCQKVEVAQRVFDSMAD---RNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIG 330 (523)
Q Consensus 254 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~ 330 (523)
...+..+...+...|++++|...|+++.+ .+...+..+...+...|++++|...++++.... +.+...+..
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~------~~~~~~~~~ 81 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADA------PDNVKVATV 81 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------TTCHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC------CCCHHHHHH
Confidence 45666778888889999999999998865 356788889999999999999999999998853 345778888
Q ss_pred HHHHHhhcCcHHHHHHHHHHhhHhcCCCCChHHHHHHHHHHHcCCChHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHh
Q 038200 331 VICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRF 410 (523)
Q Consensus 331 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 410 (523)
+...+...|++++|..+++++.+. .+.+...+..+...+...|++++|.+.++++.+. .+.+...+..+...+..
T Consensus 82 ~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~la~~~~~ 156 (186)
T 3as5_A 82 LGLTYVQVQKYDLAVPLLIKVAEA--NPINFNVRFRLGVALDNLGRFDEAIDSFKIALGL---RPNEGKVHRAIAFSYEQ 156 (186)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHhc--CcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhc---CccchHHHHHHHHHHHH
Confidence 889999999999999999999884 4556788889999999999999999999998754 23456788888889999
Q ss_pred cCCHHHHHHHHHHHhhcCCCChh
Q 038200 411 QGAVAMVERLAKSFVDMDPQDFS 433 (523)
Q Consensus 411 ~g~~~~a~~~~~~~~~~~p~~~~ 433 (523)
.|++++|...++++.+..|+++.
T Consensus 157 ~~~~~~A~~~~~~~~~~~~~~~~ 179 (186)
T 3as5_A 157 MGRHEEALPHFKKANELDEGASV 179 (186)
T ss_dssp TTCHHHHHHHHHHHHHHHHCCCG
T ss_pred cCCHHHHHHHHHHHHHcCCCchh
Confidence 99999999999999998886553
No 82
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.33 E-value=4.8e-11 Score=104.65 Aligned_cols=125 Identities=14% Similarity=0.008 Sum_probs=58.9
Q ss_pred HHHHHHhhhhhhcCChHHHHHHHHhcCC----CChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcCCC-HHHHH
Q 038200 255 ILDTALIDLYSKCQKVEVAQRVFDSMAD----RNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPD-EITFI 329 (523)
Q Consensus 255 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~p~-~~~~~ 329 (523)
..+......+...|++++|+..|++..+ ++...+..+..++...|++++|+..|++..... |+ ...+.
T Consensus 8 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-------p~~~~~~~ 80 (228)
T 4i17_A 8 NQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-------YNLANAYI 80 (228)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-------CSHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-------cchHHHHH
Confidence 4444444555555555555555554422 344444444555555555555555555555422 32 33444
Q ss_pred HHHHHHhhcCcHHHHHHHHHHhhHhcCCCCCh-------HHHHHHHHHHHcCCChHHHHHHHHhCC
Q 038200 330 GVICACVRAELLTEGRKYFRQMIDFYKIKPNF-------AHYWCMANLYAGAELTEEAEEILRKMP 388 (523)
Q Consensus 330 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~~ 388 (523)
.+..++...|++++|...+++..+. .+.+. ..|..+...+...|++++|++.++++.
T Consensus 81 ~l~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al 144 (228)
T 4i17_A 81 GKSAAYRDMKNNQEYIATLTEGIKA--VPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHAT 144 (228)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHH
Confidence 4444555555555555555555442 11122 234444444445555555555555544
No 83
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.28 E-value=2.3e-09 Score=101.62 Aligned_cols=270 Identities=9% Similarity=-0.041 Sum_probs=163.3
Q ss_pred HHHHHHhCCCchHHHHHHHHHHHCCCCCCc-c----cHHHHHHHHHccCCchHHHHHHHHHHHhCCCC-Cc----hHHHH
Q 038200 58 VIKAYSNSCVPDQGVVFYLQMIKNGFMPNS-Y----TFVSLFGSCAKTGCVERGGMCHGLALKNGVDF-EL----PVMNS 127 (523)
Q Consensus 58 ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~-~----~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~----~~~~~ 127 (523)
....+...|++++|...+++..... +++. . ++..+...+...|++++|...+++........ +. .++..
T Consensus 20 ~a~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 98 (373)
T 1hz4_A 20 RAQVAINDGNPDEAERLAKLALEEL-PPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQ 98 (373)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTC-CTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHcC-CCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 3445667788888888888877653 2221 1 34555566677788888888888776532111 11 22445
Q ss_pred HHHHHHccCChHHHHHHHhhcCCCCcchHHHHHHHHHhcCCHHHHHHHHhcCCCC----ChhHHHHHHHHHHhcCCchHH
Q 038200 128 LINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPER----NVVSWNIMISGYSKSGNPGCS 203 (523)
Q Consensus 128 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~li~~~~~~~~~~~a 203 (523)
+...+...|++++|...+++. .++......+ ....+..+...+...|++++|
T Consensus 99 la~~~~~~G~~~~A~~~~~~a------------------------l~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 154 (373)
T 1hz4_A 99 QSEILFAQGFLQTAWETQEKA------------------------FQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEA 154 (373)
T ss_dssp HHHHHHHTTCHHHHHHHHHHH------------------------HHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHH------------------------HHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHH
Confidence 556666677777776665543 2222222221 124556677788888999999
Q ss_pred HHHHHHHHHCCCC--C--CHHHHHHHHHHHhccccHHHHHHHHHHHHHcCCCCc--hHHHH----HHhhhhhhcCChHHH
Q 038200 204 LKLFREMMKSGFR--G--NDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPN--IILDT----ALIDLYSKCQKVEVA 273 (523)
Q Consensus 204 ~~~~~~m~~~~~~--p--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~----~l~~~~~~~~~~~~a 273 (523)
...+++....... + ...++..+...+...|++++|...+++.......++ ..... ..+..+...|++++|
T Consensus 155 ~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A 234 (373)
T 1hz4_A 155 EASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAA 234 (373)
T ss_dssp HHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHH
Confidence 9888887654211 1 234667777888888999999988888776422211 11111 233446678888888
Q ss_pred HHHHHhcCCCC-------hHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcCCCH-HHHHHHHHHHhhcCcHHHHH
Q 038200 274 QRVFDSMADRN-------LVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDE-ITFIGVICACVRAELLTEGR 345 (523)
Q Consensus 274 ~~~~~~~~~~~-------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~p~~-~~~~~ll~~~~~~~~~~~a~ 345 (523)
...+++...+. ...+..+...+...|++++|...+++....... .+..++. ..+..+..++...|+.++|.
T Consensus 235 ~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~ 313 (373)
T 1hz4_A 235 ANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARS-LRLMSDLNRNLLLLNQLYWQAGRKSDAQ 313 (373)
T ss_dssp HHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh-CcchhhHHHHHHHHHHHHHHhCCHHHHH
Confidence 88888776532 124556667777788888888887776543100 0011122 24444555666677777777
Q ss_pred HHHHHhhH
Q 038200 346 KYFRQMID 353 (523)
Q Consensus 346 ~~~~~~~~ 353 (523)
..+++...
T Consensus 314 ~~l~~al~ 321 (373)
T 1hz4_A 314 RVLLDALK 321 (373)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 77766654
No 84
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.27 E-value=8.6e-11 Score=107.23 Aligned_cols=210 Identities=10% Similarity=0.023 Sum_probs=143.5
Q ss_pred cHHHHHHHHHHHHHcCCCCchHHHHHHhhhhhhcCChHHHHHHHHhcCC-------C--ChHHHHHHHHHHHhcCChHHH
Q 038200 234 RFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMAD-------R--NLVCWNAMILGHCIHGKPEEG 304 (523)
Q Consensus 234 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-------~--~~~~~~~li~~~~~~g~~~~a 304 (523)
++++|...|.++ ...|...|++++|...|.+..+ + ...+|+.+..+|...|++++|
T Consensus 32 ~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A 96 (292)
T 1qqe_A 32 KFEEAADLCVQA---------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNA 96 (292)
T ss_dssp HHHHHHHHHHHH---------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred cHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHH
Confidence 477777776665 3345667777777777766533 1 135788888889999999999
Q ss_pred HHHHHHHHhCCCCCCCcCCCHHHHHHHHHHHhhc-CcHHHHHHHHHHhhHhcCCCCC----hHHHHHHHHHHHcCCChHH
Q 038200 305 IKLFTALVNGTVAGGSISPDEITFIGVICACVRA-ELLTEGRKYFRQMIDFYKIKPN----FAHYWCMANLYAGAELTEE 379 (523)
Q Consensus 305 ~~~~~~m~~~~~~~~~~~p~~~~~~~ll~~~~~~-~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~ 379 (523)
+..|++........+....-..++..+...|... |++++|+..|++..+.+.-..+ ..++..+...|.+.|++++
T Consensus 97 ~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~ 176 (292)
T 1qqe_A 97 VDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIE 176 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHH
Confidence 9988888763200000000135788888899996 9999999999998874211111 3568889999999999999
Q ss_pred HHHHHHhCCCCCCCCCc---h-HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChh-----hHHHHHHHHH--hcCCh
Q 038200 380 AEEILRKMPEDNDNMSF---E-SIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFS-----RYQFLLNVYA--VAGQW 448 (523)
Q Consensus 380 A~~~~~~~~~~~~~~~~---~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~-----~~~~l~~~~~--~~g~~ 448 (523)
|++.|+++.+....... . ...+..+..++...|++++|...++++.+++|.... .+..++.+|. ..+++
T Consensus 177 A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~ 256 (292)
T 1qqe_A 177 ASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQL 256 (292)
T ss_dssp HHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTH
T ss_pred HHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHH
Confidence 99999998753211111 1 125677777889999999999999999999987443 3445666665 45678
Q ss_pred hHHHHHHHHH
Q 038200 449 EDVARVRELM 458 (523)
Q Consensus 449 ~~A~~~~~~m 458 (523)
++|+..|+++
T Consensus 257 ~~A~~~~~~~ 266 (292)
T 1qqe_A 257 SEHCKEFDNF 266 (292)
T ss_dssp HHHHHHHTTS
T ss_pred HHHHHHhccC
Confidence 8888887654
No 85
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.22 E-value=3.6e-10 Score=103.11 Aligned_cols=213 Identities=8% Similarity=-0.031 Sum_probs=131.1
Q ss_pred HHHHHhcCCchHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHhccccHHHHHHHHHHHHHcCCCCchHHHHHHhhhhh
Q 038200 191 ISGYSKSGNPGCSLKLFREMMKS----GFRGN-DKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYS 265 (523)
Q Consensus 191 i~~~~~~~~~~~a~~~~~~m~~~----~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 265 (523)
...|...|++++|...|.+..+. |-+++ ..+|..+..+|...|++++|...+++..+. +.
T Consensus 44 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l---------------~~ 108 (292)
T 1qqe_A 44 ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQI---------------FT 108 (292)
T ss_dssp HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---------------HH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH---------------HH
Confidence 45566666666666666555432 11111 234555555555555555555555544431 11
Q ss_pred hcCChHHHHHHHHhcCCCChHHHHHHHHHHHhc-CChHHHHHHHHHHHhCCCCCCCcCCC-------HHHHHHHHHHHhh
Q 038200 266 KCQKVEVAQRVFDSMADRNLVCWNAMILGHCIH-GKPEEGIKLFTALVNGTVAGGSISPD-------EITFIGVICACVR 337 (523)
Q Consensus 266 ~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~-g~~~~a~~~~~~m~~~~~~~~~~~p~-------~~~~~~ll~~~~~ 337 (523)
..|+...+ ..+++.+...|... |++++|+..|++.... .|+ ..++..+...+..
T Consensus 109 ~~g~~~~~-----------a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~-------~~~~~~~~~~~~~~~~lg~~~~~ 170 (292)
T 1qqe_A 109 HRGQFRRG-----------ANFKFELGEILENDLHDYAKAIDCYELAGEW-------YAQDQSVALSNKCFIKCADLKAL 170 (292)
T ss_dssp HTTCHHHH-----------HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH-------HHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HcCCHHHH-----------HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHH-------HHhCCChHHHHHHHHHHHHHHHH
Confidence 11221111 23567788888886 9999999999888773 221 3467888899999
Q ss_pred cCcHHHHHHHHHHhhHhcCCCCCh-----HHHHHHHHHHHcCCChHHHHHHHHhCCCCCCCCCch--HHHHHHHHHHHH-
Q 038200 338 AELLTEGRKYFRQMIDFYKIKPNF-----AHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFE--SIMWVSLLSLCR- 409 (523)
Q Consensus 338 ~~~~~~a~~~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~--~~~~~~l~~~~~- 409 (523)
.|++++|+..|+++.+...-.+.. ..|..+..++...|++++|...+++..+....+... ...+..++.++.
T Consensus 171 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~ 250 (292)
T 1qqe_A 171 DGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNE 250 (292)
T ss_dssp TTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHT
T ss_pred hCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHc
Confidence 999999999999998741111221 156778888999999999999999988632221111 123444555554
Q ss_pred -hcCCHHHHHHHHHHHhhcCCCChhhHH
Q 038200 410 -FQGAVAMVERLAKSFVDMDPQDFSRYQ 436 (523)
Q Consensus 410 -~~g~~~~a~~~~~~~~~~~p~~~~~~~ 436 (523)
..+++++|...++++..++|.....+.
T Consensus 251 ~~~~~~~~A~~~~~~~~~l~~~~~~~~~ 278 (292)
T 1qqe_A 251 GDSEQLSEHCKEFDNFMRLDKWKITILN 278 (292)
T ss_dssp TCTTTHHHHHHHHTTSSCCCHHHHHHHH
T ss_pred CCHHHHHHHHHHhccCCccHHHHHHHHH
Confidence 456788999998888888775443333
No 86
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.20 E-value=3.3e-10 Score=102.59 Aligned_cols=231 Identities=12% Similarity=0.085 Sum_probs=151.6
Q ss_pred hccccHHHHHHHHHHHHHc-------CCCCchHHHHHHhhhhhhcCChHHHHHHHHhcCCC-----------ChHHHHHH
Q 038200 230 GRSARFNEGRSVHGYTVRT-------SLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADR-----------NLVCWNAM 291 (523)
Q Consensus 230 ~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----------~~~~~~~l 291 (523)
...|++++|...+++..+. ..+....++..+...|...|++++|+..|+++.+. ...++..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 4567777777777766652 22224677888888999999999999999887631 23578888
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCC-CcCCC-HHHHHHHHHHHhhcCcHHHHHHHHHHhhHhc-----C-CCCChHH
Q 038200 292 ILGHCIHGKPEEGIKLFTALVNGTVAGG-SISPD-EITFIGVICACVRAELLTEGRKYFRQMIDFY-----K-IKPNFAH 363 (523)
Q Consensus 292 i~~~~~~g~~~~a~~~~~~m~~~~~~~~-~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-----~-~~~~~~~ 363 (523)
...|...|++++|...|++......... ...|+ ..++..+...+...|++++|..+++++.+.. . .+....+
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 171 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT 171 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 8889999999999999999988510000 01232 4567778888888999999999988887631 1 1223567
Q ss_pred HHHHHHHHHcCCChHHHHHHHHhCCCCC-----CCCCch-HHHHHHHHHHHHhcCC------HHHHHHHHHHHhhcCCCC
Q 038200 364 YWCMANLYAGAELTEEAEEILRKMPEDN-----DNMSFE-SIMWVSLLSLCRFQGA------VAMVERLAKSFVDMDPQD 431 (523)
Q Consensus 364 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~-----~~~~~~-~~~~~~l~~~~~~~g~------~~~a~~~~~~~~~~~p~~ 431 (523)
+..+..+|...|++++|.+.++++.+.. ....+. ...+..+.......+. +..+...++......|..
T Consensus 172 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (283)
T 3edt_B 172 KNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTV 251 (283)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHH
Confidence 7788888889999999999998887420 001111 1222222222322222 333333333333334556
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 038200 432 FSRYQFLLNVYAVAGQWEDVARVRELMKK 460 (523)
Q Consensus 432 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 460 (523)
+.++..++.+|...|++++|..++++..+
T Consensus 252 ~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 252 NTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 67899999999999999999999998765
No 87
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.19 E-value=5.8e-10 Score=99.94 Aligned_cols=192 Identities=11% Similarity=0.004 Sum_probs=125.7
Q ss_pred chHHHHHHhhhhhhcCChHHHHHHHHhcCC--C-C---hHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcCCC-H
Q 038200 253 NIILDTALIDLYSKCQKVEVAQRVFDSMAD--R-N---LVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPD-E 325 (523)
Q Consensus 253 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~-~---~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~p~-~ 325 (523)
+...+..+...+.+.|++++|+..|+++.+ | + ...+..+..+|...|++++|+..|++.+.... -.|. .
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p----~~~~~~ 89 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQ----IDPRVP 89 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT----TCTTHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCC----CCchhH
Confidence 344555556666666777777777766643 2 2 45666677777777888888888887777430 0112 3
Q ss_pred HHHHHHHHHHhh--------cCcHHHHHHHHHHhhHhcCCCCChHHH-----------------HHHHHHHHcCCChHHH
Q 038200 326 ITFIGVICACVR--------AELLTEGRKYFRQMIDFYKIKPNFAHY-----------------WCMANLYAGAELTEEA 380 (523)
Q Consensus 326 ~~~~~ll~~~~~--------~~~~~~a~~~~~~~~~~~~~~~~~~~~-----------------~~l~~~~~~~g~~~~A 380 (523)
..+..+..++.. .|++++|...|+++.+.+ +.+.... ..+...|.+.|++++|
T Consensus 90 ~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 167 (261)
T 3qky_A 90 QAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY--PNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAA 167 (261)
T ss_dssp HHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC--TTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHC--cCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHH
Confidence 455666666766 788888888888877742 2222222 5568888999999999
Q ss_pred HHHHHhCCCCCCCCCchHHHHHHHHHHHHhc----------CCHHHHHHHHHHHhhcCCCChh---hHHHHHHHHHhcCC
Q 038200 381 EEILRKMPEDNDNMSFESIMWVSLLSLCRFQ----------GAVAMVERLAKSFVDMDPQDFS---RYQFLLNVYAVAGQ 447 (523)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----------g~~~~a~~~~~~~~~~~p~~~~---~~~~l~~~~~~~g~ 447 (523)
+..|+++.+...........+..+..++... |++++|...++++++..|+++. +...+..++.+.|+
T Consensus 168 ~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~~~~~~~~ 247 (261)
T 3qky_A 168 AVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLLRTAEELYTRARQRLTE 247 (261)
T ss_dssp HHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHHHH
Confidence 9999988753221122345666777777755 8889999999999999998753 44445555555554
Q ss_pred hhH
Q 038200 448 WED 450 (523)
Q Consensus 448 ~~~ 450 (523)
+++
T Consensus 248 ~~~ 250 (261)
T 3qky_A 248 LEG 250 (261)
T ss_dssp HHT
T ss_pred hhh
Confidence 443
No 88
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.19 E-value=4e-09 Score=94.33 Aligned_cols=140 Identities=10% Similarity=0.025 Sum_probs=62.4
Q ss_pred HHHHHHHHHHcCCCCchHHHHHHhhhhhhcCChHHHHHHHHhcCCC-----ChHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 038200 238 GRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADR-----NLVCWNAMILGHCIHGKPEEGIKLFTALV 312 (523)
Q Consensus 238 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 312 (523)
+...+++....+ .++...+..+..++...|++++|++++.+.... +...+..++..+.+.|+.+.|.+.+++|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 344444444332 223333334455555555555555555554221 23344445555555555555555555554
Q ss_pred hCCCCCCCcCC-----CHHHHHHHHHH--HhhcC--cHHHHHHHHHHhhHhcCCCCChHHHHHHHHHHHcCCChHHHHHH
Q 038200 313 NGTVAGGSISP-----DEITFIGVICA--CVRAE--LLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEI 383 (523)
Q Consensus 313 ~~~~~~~~~~p-----~~~~~~~ll~~--~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 383 (523)
+ ..| +..+...|..+ ....| ++.+|..+|+++.+. .|+..+-..+..++.+.|++++|.+.
T Consensus 164 ~-------~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~---~p~~~~~~lLln~~~~~g~~~eAe~~ 233 (310)
T 3mv2_B 164 N-------AIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT---FPTWKTQLGLLNLHLQQRNIAEAQGI 233 (310)
T ss_dssp H-------HSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT---SCSHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred h-------cCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh---CCCcccHHHHHHHHHHcCCHHHHHHH
Confidence 4 234 23333444433 11122 455555555555432 23322223333345555555555555
Q ss_pred HHhCC
Q 038200 384 LRKMP 388 (523)
Q Consensus 384 ~~~~~ 388 (523)
++.+.
T Consensus 234 L~~l~ 238 (310)
T 3mv2_B 234 VELLL 238 (310)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55443
No 89
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.17 E-value=2.2e-10 Score=116.75 Aligned_cols=160 Identities=11% Similarity=0.036 Sum_probs=85.2
Q ss_pred hHHHHHHhhhhhhcCChHHHHHHHHhcCC---CChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcCCC-HHHHH
Q 038200 254 IILDTALIDLYSKCQKVEVAQRVFDSMAD---RNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPD-EITFI 329 (523)
Q Consensus 254 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~p~-~~~~~ 329 (523)
...++.|..+|.+.|++++|++.|++..+ .+..+|..+..+|.+.|++++|+..|++.++. .|+ ...|.
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l-------~P~~~~a~~ 81 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI-------SPTFADAYS 81 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------CTTCHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-------CCCCHHHHH
Confidence 34444455555555555555555544422 23445555555555555555555555555552 233 44555
Q ss_pred HHHHHHhhcCcHHHHHHHHHHhhHhcCCCCChHHHHHHHHHHHcCCChHHHHHHHHhCCCCCCCCCc-hHHHHHHHHHHH
Q 038200 330 GVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSF-ESIMWVSLLSLC 408 (523)
Q Consensus 330 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~~~l~~~~ 408 (523)
.+..++...|++++|++.|++..+. -+-+...|..+..+|.+.|++++|++.|++.++ +.| +...+..+...+
T Consensus 82 nLg~~l~~~g~~~~A~~~~~kAl~l--~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~----l~P~~~~a~~~L~~~l 155 (723)
T 4gyw_A 82 NMGNTLKEMQDVQGALQCYTRAIQI--NPAFADAHSNLASIHKDSGNIPEAIASYRTALK----LKPDFPDAYCNLAHCL 155 (723)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCSCCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----hCCCChHHHhhhhhHH
Confidence 5555555666666666666655542 122345555566666666666666666665553 233 244555555556
Q ss_pred HhcCCHHHHHHHHHHHhh
Q 038200 409 RFQGAVAMVERLAKSFVD 426 (523)
Q Consensus 409 ~~~g~~~~a~~~~~~~~~ 426 (523)
...|++++|.+.++++.+
T Consensus 156 ~~~g~~~~A~~~~~kal~ 173 (723)
T 4gyw_A 156 QIVCDWTDYDERMKKLVS 173 (723)
T ss_dssp HHTTCCTTHHHHHHHHHH
T ss_pred HhcccHHHHHHHHHHHHH
Confidence 666666666666555554
No 90
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.16 E-value=1e-09 Score=99.36 Aligned_cols=228 Identities=13% Similarity=0.094 Sum_probs=133.8
Q ss_pred cCCchHHHHHHHHHHHC-------CCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHc------CCCC-chHHHHHHhh
Q 038200 197 SGNPGCSLKLFREMMKS-------GFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRT------SLKP-NIILDTALID 262 (523)
Q Consensus 197 ~~~~~~a~~~~~~m~~~-------~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~------~~~~-~~~~~~~l~~ 262 (523)
.|++++|..+|++..+. ..+....++..+..++...|++++|...++++.+. +..| ...++..+..
T Consensus 14 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~ 93 (283)
T 3edt_B 14 LVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAV 93 (283)
T ss_dssp CSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHH
Confidence 45555555555444331 11223445566666666667777777666666543 1122 3456666677
Q ss_pred hhhhcCChHHHHHHHHhcCC----------C-ChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC-CCcCCC-HHHHH
Q 038200 263 LYSKCQKVEVAQRVFDSMAD----------R-NLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAG-GSISPD-EITFI 329 (523)
Q Consensus 263 ~~~~~~~~~~a~~~~~~~~~----------~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~-~~~~p~-~~~~~ 329 (523)
.|...|++++|...|++..+ + ...++..+...|...|++++|...++++....... ++..|+ ..++.
T Consensus 94 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 173 (283)
T 3edt_B 94 LYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKN 173 (283)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence 77777777777776666532 1 23467777888888888888888888877640000 001233 45777
Q ss_pred HHHHHHhhcCcHHHHHHHHHHhhHhc------CCCC-ChHHHHHHHHHHHcCC------ChHHHHHHHHhCCCCCCCCCc
Q 038200 330 GVICACVRAELLTEGRKYFRQMIDFY------KIKP-NFAHYWCMANLYAGAE------LTEEAEEILRKMPEDNDNMSF 396 (523)
Q Consensus 330 ~ll~~~~~~~~~~~a~~~~~~~~~~~------~~~~-~~~~~~~l~~~~~~~g------~~~~A~~~~~~~~~~~~~~~~ 396 (523)
.+...+...|++++|..+++++.+.. ...+ ....+..+...+...+ .+..+...++..... .+.
T Consensus 174 ~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~ 250 (283)
T 3edt_B 174 NLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVD---SPT 250 (283)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCC---CHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCC---CHH
Confidence 88888999999999999998887631 1122 2233433443333322 344455555554421 223
Q ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHhhc
Q 038200 397 ESIMWVSLLSLCRFQGAVAMVERLAKSFVDM 427 (523)
Q Consensus 397 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 427 (523)
....+..+...+...|++++|..+++++++.
T Consensus 251 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 251 VNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4567778888999999999999999998764
No 91
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.16 E-value=5.4e-09 Score=93.45 Aligned_cols=176 Identities=8% Similarity=0.017 Sum_probs=128.2
Q ss_pred HHHHHHhcCC---CChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCc-CCCHHHHHHHHHHHhhcCcHHHHHHHH
Q 038200 273 AQRVFDSMAD---RNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSI-SPDEITFIGVICACVRAELLTEGRKYF 348 (523)
Q Consensus 273 a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~-~p~~~~~~~ll~~~~~~~~~~~a~~~~ 348 (523)
|+..|++..+ ++..++..+..++...|++++|++++.+.+..+ - .-+...+..++..+.+.|+.+.|.+.+
T Consensus 85 a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~-----~~~~~lea~~l~vqi~L~~~r~d~A~k~l 159 (310)
T 3mv2_B 85 NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDND-----EAEGTTELLLLAIEVALLNNNVSTASTIF 159 (310)
T ss_dssp CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSS-----CSTTHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-----CCcCcHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 5677776653 455566677888888999999999999887765 2 125667788888999999999999999
Q ss_pred HHhhHhcCCCC-----ChHHHHHHHHH--HH--cCCChHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHhcCCHHHHHH
Q 038200 349 RQMIDFYKIKP-----NFAHYWCMANL--YA--GAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVER 419 (523)
Q Consensus 349 ~~~~~~~~~~~-----~~~~~~~l~~~--~~--~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 419 (523)
++|.+. .| +..+...|+.+ .. ..+++.+|..+|+++.+. .|+...-..++.++...|++++|++
T Consensus 160 ~~~~~~---~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~----~p~~~~~~lLln~~~~~g~~~eAe~ 232 (310)
T 3mv2_B 160 DNYTNA---IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT----FPTWKTQLGLLNLHLQQRNIAEAQG 232 (310)
T ss_dssp HHHHHH---SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT----SCSHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHhc---CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh----CCCcccHHHHHHHHHHcCCHHHHHH
Confidence 998884 34 24445555544 22 234889999999998753 4542222333447888899999999
Q ss_pred HHHHHhhc----------CCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 038200 420 LAKSFVDM----------DPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRR 462 (523)
Q Consensus 420 ~~~~~~~~----------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 462 (523)
.++.+.+. +|+++.++..++.+....|+ +|.++++++++..
T Consensus 233 ~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~ 283 (310)
T 3mv2_B 233 IVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLD 283 (310)
T ss_dssp HHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTT
T ss_pred HHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhC
Confidence 99877765 48888888888877777886 8888888887753
No 92
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.15 E-value=2e-09 Score=96.37 Aligned_cols=173 Identities=12% Similarity=0.048 Sum_probs=139.0
Q ss_pred CCChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcCCC----HHHHHHHHHHHhhcCcHHHHHHHHHHhhHhcCC
Q 038200 282 DRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPD----EITFIGVICACVRAELLTEGRKYFRQMIDFYKI 357 (523)
Q Consensus 282 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 357 (523)
..+...+..+...+...|++++|+..|++++... |+ ...+..+..++...|++++|...|+++.+.+.-
T Consensus 12 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-------p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~ 84 (261)
T 3qky_A 12 HSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-------RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQI 84 (261)
T ss_dssp CSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-------SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-------CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCC
Confidence 3466777888889999999999999999999854 43 567888889999999999999999999985322
Q ss_pred CCC-hHHHHHHHHHHHc--------CCChHHHHHHHHhCCCCCCCCCchHHHH--------------HHHHHHHHhcCCH
Q 038200 358 KPN-FAHYWCMANLYAG--------AELTEEAEEILRKMPEDNDNMSFESIMW--------------VSLLSLCRFQGAV 414 (523)
Q Consensus 358 ~~~-~~~~~~l~~~~~~--------~g~~~~A~~~~~~~~~~~~~~~~~~~~~--------------~~l~~~~~~~g~~ 414 (523)
.|. ...+..+..++.. .|++++|...|+++.+...+........ ..+...+...|++
T Consensus 85 ~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~ 164 (261)
T 3qky_A 85 DPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELY 164 (261)
T ss_dssp CTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCH
T ss_pred CchhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCH
Confidence 233 4567788888888 9999999999999885421111111121 4567788999999
Q ss_pred HHHHHHHHHHhhcCCCC---hhhHHHHHHHHHhc----------CChhHHHHHHHHHHhC
Q 038200 415 AMVERLAKSFVDMDPQD---FSRYQFLLNVYAVA----------GQWEDVARVRELMKKR 461 (523)
Q Consensus 415 ~~a~~~~~~~~~~~p~~---~~~~~~l~~~~~~~----------g~~~~A~~~~~~m~~~ 461 (523)
++|...++++++..|++ +.++..++.+|... |++++|...++++.+.
T Consensus 165 ~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~ 224 (261)
T 3qky_A 165 EAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQI 224 (261)
T ss_dssp HHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHH
Confidence 99999999999999974 45888999999877 8999999999999775
No 93
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.15 E-value=3.9e-09 Score=92.13 Aligned_cols=165 Identities=15% Similarity=0.095 Sum_probs=103.7
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcCCC----HHHHHHHHHHHhhcCcHHHHHHHHHHhhHhcCCCCCh-H
Q 038200 288 WNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPD----EITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNF-A 362 (523)
Q Consensus 288 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~ 362 (523)
+..+...+...|++++|+..|+++.... |+ ...+..+..++.+.|++++|...|+++.+.+.-.+.. .
T Consensus 7 ~~~~a~~~~~~g~~~~A~~~~~~~~~~~-------p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~ 79 (225)
T 2yhc_A 7 IYATAQQKLQDGNWRQAITQLEALDNRY-------PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDY 79 (225)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHC-------TTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-------CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHH
Confidence 3344445555566666666666655532 22 2344555555556666666666666655532111111 1
Q ss_pred HHHHHHHHHH------------------cCCChHHHHHHHHhCCCCCCCCCchH-HH-----------------HHHHHH
Q 038200 363 HYWCMANLYA------------------GAELTEEAEEILRKMPEDNDNMSFES-IM-----------------WVSLLS 406 (523)
Q Consensus 363 ~~~~l~~~~~------------------~~g~~~~A~~~~~~~~~~~~~~~~~~-~~-----------------~~~l~~ 406 (523)
.+..+..++. ..|++++|...|+++++. .|+. .. ...+..
T Consensus 80 a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~----~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~ 155 (225)
T 2yhc_A 80 VMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG----YPNSQYTTDATKRLVFLKDRLAKYEYSVAE 155 (225)
T ss_dssp HHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT----CTTCTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH----CcCChhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2323333332 356777777777777653 2221 11 123455
Q ss_pred HHHhcCCHHHHHHHHHHHhhcCCCCh---hhHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 038200 407 LCRFQGAVAMVERLAKSFVDMDPQDF---SRYQFLLNVYAVAGQWEDVARVRELMKKRRM 463 (523)
Q Consensus 407 ~~~~~g~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 463 (523)
.+...|+++.|...++++++..|+++ .++..++.+|.+.|++++|.+.++.+...+.
T Consensus 156 ~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~ 215 (225)
T 2yhc_A 156 YYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSS 215 (225)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCS
T ss_pred HHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCC
Confidence 68889999999999999999999875 5789999999999999999999999987653
No 94
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.14 E-value=1e-09 Score=86.79 Aligned_cols=130 Identities=15% Similarity=0.185 Sum_probs=104.2
Q ss_pred HHHHHHHHHhhcCcHHHHHHHHHHhhHhcCCCCChHHHHHHHHHHHcCCChHHHHHHHHhCCCCCCCCCchHHHHHHHHH
Q 038200 327 TFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLS 406 (523)
Q Consensus 327 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~ 406 (523)
.+..+...+...|++++|..+++++.+. .+.+...+..+...+...|++++|.+.++++... .+.+...+..+..
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~l~~ 77 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALEL--DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL---DPRSAEAWYNLGN 77 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHc--CCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHH---CCCchHHHHHHHH
Confidence 4566677778888888888888888763 2345677777888888888888888888887743 2334567777778
Q ss_pred HHHhcCCHHHHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 038200 407 LCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKR 461 (523)
Q Consensus 407 ~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 461 (523)
.+...|++++|...++++.+..|.++.++..++.+|...|++++|...++++.+.
T Consensus 78 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 78 AYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 8888999999999999999888888888899999999999999999999888664
No 95
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.14 E-value=7.2e-11 Score=95.76 Aligned_cols=144 Identities=13% Similarity=0.062 Sum_probs=106.5
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCCCcCCC-HHHHHHHHHHHhhcCcHHHHHHHHHHhhHhcCCCCChHHHHHHHH
Q 038200 291 MILGHCIHGKPEEGIKLFTALVNGTVAGGSISPD-EITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMAN 369 (523)
Q Consensus 291 li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 369 (523)
|...+...|++++|+..+...... .|+ ...+..+...|.+.|++++|.+.|+++.+. -+-++..|..+..
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~~-------~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~--~p~~~~a~~~lg~ 73 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTPS-------PRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINV--QERDPKAHRFLGL 73 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSCS-------HHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred hHHHHHHcChHHHHHHHHHHhccc-------CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHH
Confidence 344455667788888888777653 343 345566777888888888888888888873 3346778888888
Q ss_pred HHHcCCChHHHHHHHHhCCCCCCCCCc-hHHHHHHHHHHHHhcCCHHHHHH-HHHHHhhcCCCChhhHHHHHHHHHhcCC
Q 038200 370 LYAGAELTEEAEEILRKMPEDNDNMSF-ESIMWVSLLSLCRFQGAVAMVER-LAKSFVDMDPQDFSRYQFLLNVYAVAGQ 447 (523)
Q Consensus 370 ~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~-~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 447 (523)
+|...|++++|+..|++..+ +.| +...+..+...+...|++++|.. +++++++++|+++.+|.....++...|+
T Consensus 74 ~~~~~~~~~~A~~~~~~al~----~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 74 LYELEENTDKAVECYRRSVE----LNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHTTCHHHHHHHHHHHHH----HCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred HHHHcCchHHHHHHHHHHHH----hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 88888888888888888875 344 46677788888888888876554 4688889999988888888888887775
No 96
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.09 E-value=3.3e-09 Score=83.77 Aligned_cols=133 Identities=15% Similarity=0.197 Sum_probs=107.8
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhHhcCCCCChHHHHH
Q 038200 287 CWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWC 366 (523)
Q Consensus 287 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 366 (523)
.|..+...+...|++++|..+++++.... +.+...+..+...+...|++++|..+++++.+. .+.+...+..
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~ 74 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD------PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPRSAEAWYN 74 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC------CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHH--CCCchHHHHH
Confidence 56777888888899999999999888754 335667788888888899999999999998874 3445777888
Q ss_pred HHHHHHcCCChHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCC
Q 038200 367 MANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQ 430 (523)
Q Consensus 367 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 430 (523)
+...+...|++++|.+.++++... .+.+...+..+...+...|++++|...++++.+.+|+
T Consensus 75 l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 135 (136)
T 2fo7_A 75 LGNAYYKQGDYDEAIEYYQKALEL---DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 135 (136)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCC
Confidence 888999999999999999888753 2335667777888889999999999999999888774
No 97
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.09 E-value=2.6e-09 Score=97.00 Aligned_cols=177 Identities=7% Similarity=-0.073 Sum_probs=144.2
Q ss_pred hHHHHHHHHhcCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcCC-CHHHHHHHHHHHhhcCcHHHHHHHH
Q 038200 270 VEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISP-DEITFIGVICACVRAELLTEGRKYF 348 (523)
Q Consensus 270 ~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~ 348 (523)
.+.....+......+...+..+...+...|++++|...|++.... .| +...+..+...+...|++++|...+
T Consensus 102 ~~~l~~~l~~~lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~-------~P~~~~a~~~la~~~~~~g~~~~A~~~l 174 (287)
T 3qou_A 102 EEAIRALLDXVLPREEELXAQQAMQLMQESNYTDALPLLXDAWQL-------SNQNGEIGLLLAETLIALNRSEDAEAVL 174 (287)
T ss_dssp HHHHHHHHHHHSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------TTSCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHh-------CCcchhHHHHHHHHHHHCCCHHHHHHHH
Confidence 445556666666556677888888999999999999999999985 35 4678888899999999999999999
Q ss_pred HHhhHhcCCCCChHHHHH-HHHHHHcCCChHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHhhc
Q 038200 349 RQMIDFYKIKPNFAHYWC-MANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDM 427 (523)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~-l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 427 (523)
+++... .|+...... ....+...++.++|.+.+++..+. .+.+...+..+...+...|++++|...++++++.
T Consensus 175 ~~~~~~---~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~---~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~ 248 (287)
T 3qou_A 175 XTIPLQ---DQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAE---NPEDAALATQLALQLHQVGRNEEALELLFGHLRX 248 (287)
T ss_dssp TTSCGG---GCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HhCchh---hcchHHHHHHHHHHHHhhcccCccHHHHHHHHhc---CCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhc
Confidence 999764 455443332 333466778888899999988854 2445778888899999999999999999999999
Q ss_pred CCCC--hhhHHHHHHHHHhcCChhHHHHHHHHHH
Q 038200 428 DPQD--FSRYQFLLNVYAVAGQWEDVARVRELMK 459 (523)
Q Consensus 428 ~p~~--~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 459 (523)
+|++ ..++..|+.+|...|+.++|...+++..
T Consensus 249 ~p~~~~~~a~~~l~~~~~~~g~~~~a~~~~r~al 282 (287)
T 3qou_A 249 DLTAADGQTRXTFQEILAALGTGDALASXYRRQL 282 (287)
T ss_dssp CTTGGGGHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred ccccccchHHHHHHHHHHHcCCCCcHHHHHHHHH
Confidence 9987 8899999999999999999999888754
No 98
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.08 E-value=4.5e-10 Score=114.98 Aligned_cols=149 Identities=12% Similarity=0.067 Sum_probs=73.8
Q ss_pred hccccHHHHHHHHHHHH--------HcCCCCchHHHHHHhhhhhhcCChHHHHHHHHhcCC---CChHHHHHHHHHHHhc
Q 038200 230 GRSARFNEGRSVHGYTV--------RTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMAD---RNLVCWNAMILGHCIH 298 (523)
Q Consensus 230 ~~~~~~~~a~~~~~~~~--------~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~ 298 (523)
...|++++|.+.++++. +.. +.+...+..+..+|...|++++|++.|+++.+ .+...|..+..+|...
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHc
Confidence 44555555555555554 221 22344445555555555555555555555432 2344555555555555
Q ss_pred CChHHHHHHHHHHHhCCCCCCCcCC-CHHHHHHHHHHHhhcCcHHHHHHHHHHhhHhcCCCCChHHHHHHHHHHHcCCCh
Q 038200 299 GKPEEGIKLFTALVNGTVAGGSISP-DEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELT 377 (523)
Q Consensus 299 g~~~~a~~~~~~m~~~~~~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 377 (523)
|++++|+..|++..+. .| +...+..+..++.+.|++++ ...|+++.+. .+.+...|..+..+|.+.|++
T Consensus 481 g~~~~A~~~~~~al~l-------~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~--~P~~~~a~~~lg~~~~~~g~~ 550 (681)
T 2pzi_A 481 GDYDSATKHFTEVLDT-------FPGELAPKLALAATAELAGNTDE-HKFYQTVWST--NDGVISAAFGLARARSAEGDR 550 (681)
T ss_dssp TCHHHHHHHHHHHHHH-------STTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHH--CTTCHHHHHHHHHHHHHTTCH
T ss_pred CCHHHHHHHHHHHHHh-------CCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHh--CCchHHHHHHHHHHHHHcCCH
Confidence 5555555555555552 23 23444455555555555555 5555555542 122344455555555555555
Q ss_pred HHHHHHHHhCCC
Q 038200 378 EEAEEILRKMPE 389 (523)
Q Consensus 378 ~~A~~~~~~~~~ 389 (523)
++|.+.|+++.+
T Consensus 551 ~~A~~~~~~al~ 562 (681)
T 2pzi_A 551 VGAVRTLDEVPP 562 (681)
T ss_dssp HHHHHHHHTSCT
T ss_pred HHHHHHHHhhcc
Confidence 555555555553
No 99
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=99.05 E-value=3e-07 Score=89.81 Aligned_cols=203 Identities=11% Similarity=0.003 Sum_probs=120.8
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHcCCCCchHHHHHHhhhhhhcCChHHH-HHHHHh
Q 038200 201 GCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVA-QRVFDS 279 (523)
Q Consensus 201 ~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a-~~~~~~ 279 (523)
+.+..+|++++.. .+.+...|...+.-+.+.|+.+.|..+|++.... +.+...+.. |....+.++. ..+.+.
T Consensus 196 ~Rv~~~ye~al~~-~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~~----y~~~~e~~~~~~~l~~~ 268 (493)
T 2uy1_A 196 SRMHFIHNYILDS-FYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSLY----YGLVMDEEAVYGDLKRK 268 (493)
T ss_dssp HHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHHH----HHHHTTCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHc-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHHH----HHhhcchhHHHHHHHHH
Confidence 4467788888875 3456677777777788889999999999999987 334433332 2221111111 112211
Q ss_pred cC----------C--CChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcCCCHHHHHHHHHHHh-hcCcHHHHHH
Q 038200 280 MA----------D--RNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACV-RAELLTEGRK 346 (523)
Q Consensus 280 ~~----------~--~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~ll~~~~-~~~~~~~a~~ 346 (523)
.. . .....|...+....+.++.+.|..+|.+. ... ..+...|......-. ..++.+.|..
T Consensus 269 ~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~------~~~~~v~i~~A~lE~~~~~d~~~ar~ 341 (493)
T 2uy1_A 269 YSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNE------GVGPHVFIYCAFIEYYATGSRATPYN 341 (493)
T ss_dssp TC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTS------CCCHHHHHHHHHHHHHHHCCSHHHHH
T ss_pred HHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCC------CCChHHHHHHHHHHHHHCCChHHHHH
Confidence 10 0 01234566666666667788888888877 321 123333332222111 1235778888
Q ss_pred HHHHhhHhcCCCCChHHHHHHHHHHHcCCChHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 038200 347 YFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVD 426 (523)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 426 (523)
+|+...+.+ +-++..+...++.....|+.+.|..+|+++.. ....|...+..-...|+.+.+..++++..+
T Consensus 342 ife~al~~~--~~~~~~~~~yid~e~~~~~~~~aR~l~er~~k-------~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 342 IFSSGLLKH--PDSTLLKEEFFLFLLRIGDEENARALFKRLEK-------TSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHSCC-------BHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-------HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 888877743 22344555566666777888888888888741 355666666666677887777777777664
No 100
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.02 E-value=4.3e-09 Score=105.77 Aligned_cols=162 Identities=11% Similarity=0.038 Sum_probs=126.2
Q ss_pred cCChHHHHHHHHhcCC---CChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcCCCHHHHHHHHHHHhhcCcHHH
Q 038200 267 CQKVEVAQRVFDSMAD---RNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTE 343 (523)
Q Consensus 267 ~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~ 343 (523)
.|++++|++.|++..+ .+...|..+...|...|++++|.+.|++..+.. +.+...+..+..++...|++++
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~------p~~~~~~~~lg~~~~~~g~~~~ 75 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH------PGHPEAVARLGRVRWTQQRHAE 75 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS------TTCHHHHHHHHHHHHHTTCHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHH
Confidence 4788999999998865 357889999999999999999999999999854 3357788899999999999999
Q ss_pred HHHHHHHhhHhcCCCCChHHHHHHHHHHHcCCChHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHhc---CCHHHHHHH
Q 038200 344 GRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQ---GAVAMVERL 420 (523)
Q Consensus 344 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~a~~~ 420 (523)
|.+.+++..+. .+.+...+..+..+|.+.|++++|.+.+++..+. .+.+...+..+...+... |+.++|...
T Consensus 76 A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~ 150 (568)
T 2vsy_A 76 AAVLLQQASDA--APEHPGIALWLGHALEDAGQAEAAAAAYTRAHQL---LPEEPYITAQLLNWRRRLCDWRALDVLSAQ 150 (568)
T ss_dssp HHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCCTTHHHHHHH
T ss_pred HHHHHHHHHhc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHhhccccHHHHHHH
Confidence 99999999884 3446788999999999999999999999998853 233567788888889999 999999999
Q ss_pred HHHHhhcCCCChhhHHHHH
Q 038200 421 AKSFVDMDPQDFSRYQFLL 439 (523)
Q Consensus 421 ~~~~~~~~p~~~~~~~~l~ 439 (523)
++++.+.+|.+...|..++
T Consensus 151 ~~~al~~~p~~~~~~~~l~ 169 (568)
T 2vsy_A 151 VRAAVAQGVGAVEPFAFLS 169 (568)
T ss_dssp HHHHHHHTCCCSCHHHHTT
T ss_pred HHHHHhcCCcccChHHHhC
Confidence 9999999998887777766
No 101
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.01 E-value=1.2e-08 Score=87.76 Aligned_cols=181 Identities=9% Similarity=-0.002 Sum_probs=126.3
Q ss_pred HHHHHHHHHhccccHHHHHHHHHHHHHcCCCCc-hHHHHHHhhhhhhcCChHHHHHHHHhcCCCChHHHHHHHHHHHhcC
Q 038200 221 TMASVLTACGRSARFNEGRSVHGYTVRTSLKPN-IILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHG 299 (523)
Q Consensus 221 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g 299 (523)
.+......+...|++++|...|++..+.. |+ ...+... ...... .........+..+|...|
T Consensus 6 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~-----~~~~~~----------~~~~~~~~~lg~~~~~~g 68 (208)
T 3urz_A 6 EMLQKVSAAIEAGQNGQAVSYFRQTIALN--IDRTEMYYWT-----NVDKNS----------EISSKLATELALAYKKNR 68 (208)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--HHHHHHHHHH-----HSCTTS----------HHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCChHHHHHh-----hhcchh----------hhhHHHHHHHHHHHHHCC
Confidence 34445556778888888888888887753 32 2222211 000000 011223455888899999
Q ss_pred ChHHHHHHHHHHHhCCCCCCCcCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhHhcCCCCChHHHHHHHHHHHcCCC--h
Q 038200 300 KPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAEL--T 377 (523)
Q Consensus 300 ~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~ 377 (523)
++++|+..|++.++.. +-+...+..+..++...|++++|...|+++.+. -+.+...+..+..+|...|+ .
T Consensus 69 ~~~~A~~~~~~al~~~------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~~~~~~ 140 (208)
T 3urz_A 69 NYDKAYLFYKELLQKA------PNNVDCLEACAEMQVCRGQEKDALRMYEKILQL--EADNLAANIFLGNYYYLTAEQEK 140 (208)
T ss_dssp CHHHHHHHHHHHHHHC------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHC------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHHhHHHH
Confidence 9999999999999853 235778889999999999999999999999984 34467888888888866554 4
Q ss_pred HHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCC
Q 038200 378 EEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQ 430 (523)
Q Consensus 378 ~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 430 (523)
+.+...++.... ..|....+.....++...|++++|...+++++++.|+
T Consensus 141 ~~~~~~~~~~~~----~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~ 189 (208)
T 3urz_A 141 KKLETDYKKLSS----PTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPS 189 (208)
T ss_dssp HHHHHHHC---C----CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCC
T ss_pred HHHHHHHHHHhC----CCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Confidence 556677777662 3444445555566777889999999999999999995
No 102
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.01 E-value=7.1e-10 Score=89.82 Aligned_cols=126 Identities=10% Similarity=-0.040 Sum_probs=103.6
Q ss_pred HHHHHhhcCcHHHHHHHHHHhhHhcCCCCChHHHHHHHHHHHcCCChHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHh
Q 038200 331 VICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRF 410 (523)
Q Consensus 331 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 410 (523)
|...+...|++++|+..++..... .+-+...+..+...|.+.|++++|++.|++.++. .+.+...|..+...+..
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~~--~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~---~p~~~~a~~~lg~~~~~ 77 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTPS--PRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINV---QERDPKAHRFLGLLYEL 77 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSCS--HHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHH
T ss_pred hHHHHHHcChHHHHHHHHHHhccc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHH
Confidence 445566778999999999988762 2224566778999999999999999999999863 23357888889999999
Q ss_pred cCCHHHHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChhHHHHH-HHHHHhC
Q 038200 411 QGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARV-RELMKKR 461 (523)
Q Consensus 411 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~-~~~m~~~ 461 (523)
.|++++|...++++++++|+++.++..++.+|.+.|++++|.+. +++..+.
T Consensus 78 ~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l 129 (150)
T 4ga2_A 78 EENTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKL 129 (150)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHH
T ss_pred cCchHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999887765 4777554
No 103
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.00 E-value=4.7e-08 Score=84.24 Aligned_cols=173 Identities=8% Similarity=-0.052 Sum_probs=129.8
Q ss_pred HHHHHHhcCC-CChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcCCCHHHHHHHHHHHhhcC----cHHHHHHH
Q 038200 273 AQRVFDSMAD-RNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAE----LLTEGRKY 347 (523)
Q Consensus 273 a~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~ll~~~~~~~----~~~~a~~~ 347 (523)
|++.|++..+ .+...+..+...|...+++++|+.+|++..+.+ +...+..|...|.. + ++++|..+
T Consensus 5 A~~~~~~aa~~g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g--------~~~a~~~lg~~y~~-~g~~~~~~~A~~~ 75 (212)
T 3rjv_A 5 PGSQYQQQAEAGDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG--------DGDALALLAQLKIR-NPQQADYPQARQL 75 (212)
T ss_dssp TTHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT--------CHHHHHHHHHHTTS-STTSCCHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC--------CHHHHHHHHHHHHc-CCCCCCHHHHHHH
Confidence 3444444332 456677777777777888888888888887754 45566667777776 6 88889888
Q ss_pred HHHhhHhcCCCCChHHHHHHHHHHHc----CCChHHHHHHHHhCCCCCCCCCc---hHHHHHHHHHHHHh----cCCHHH
Q 038200 348 FRQMIDFYKIKPNFAHYWCMANLYAG----AELTEEAEEILRKMPEDNDNMSF---ESIMWVSLLSLCRF----QGAVAM 416 (523)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~---~~~~~~~l~~~~~~----~g~~~~ 416 (523)
|++..+. + ++..+..|...|.. .+++++|+++|++..+. .+ ....+..+...|.. .++.++
T Consensus 76 ~~~A~~~-g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~----~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~ 147 (212)
T 3rjv_A 76 AEKAVEA-G---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARD----SESDAAVDAQMLLGLIYASGVHGPEDDVK 147 (212)
T ss_dssp HHHHHHT-T---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSS----TTSHHHHHHHHHHHHHHHHTSSSSCCHHH
T ss_pred HHHHHHC-C---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHc----CCCcchHHHHHHHHHHHHcCCCCCCCHHH
Confidence 8888763 2 56677778888877 78899999999988853 33 25667777777777 778999
Q ss_pred HHHHHHHHhhcCCCChhhHHHHHHHHHhc-C-----ChhHHHHHHHHHHhCCC
Q 038200 417 VERLAKSFVDMDPQDFSRYQFLLNVYAVA-G-----QWEDVARVRELMKKRRM 463 (523)
Q Consensus 417 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~-g-----~~~~A~~~~~~m~~~~~ 463 (523)
|..+++++.+. |.++.++..|+.+|... | ++++|...|++..+.|.
T Consensus 148 A~~~~~~A~~~-~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 148 ASEYFKGSSSL-SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHHHHHHHHHT-SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHc-CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 99999999888 55677888899988764 3 88999999998877764
No 104
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.99 E-value=4.1e-09 Score=87.97 Aligned_cols=159 Identities=7% Similarity=-0.037 Sum_probs=105.7
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhHhcCCCCChHHHHHHH
Q 038200 289 NAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMA 368 (523)
Q Consensus 289 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 368 (523)
..+...+...|++++|...|++..... +.+...+..+...+...|++++|...++++.+. .|++..+..+.
T Consensus 10 ~~~a~~~~~~g~~~~A~~~~~~al~~~------P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~---~p~~~~~~~~~ 80 (176)
T 2r5s_A 10 LKQVSELLQQGEHAQALNVIQTLSDEL------QSRGDVKLAKADCLLETKQFELAQELLATIPLE---YQDNSYKSLIA 80 (176)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTSCHHH------HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG---GCCHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHC------CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc---cCChHHHHHHH
Confidence 344555666677777777776666532 223456666666777777777777777776653 22333322222
Q ss_pred HH-HHcCCChHHHHHHHHhCCCCCCCCCc-hHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCC--hhhHHHHHHHHHh
Q 038200 369 NL-YAGAELTEEAEEILRKMPEDNDNMSF-ESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQD--FSRYQFLLNVYAV 444 (523)
Q Consensus 369 ~~-~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~--~~~~~~l~~~~~~ 444 (523)
.. +...+...+|.+.+++..+. .| +...+..+...+...|++++|...++++++.+|+. +..+..++.+|..
T Consensus 81 ~~~~~~~~~~~~a~~~~~~al~~----~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~ 156 (176)
T 2r5s_A 81 KLELHQQAAESPELKRLEQELAA----NPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSA 156 (176)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHHH----STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHH
T ss_pred HHHHHhhcccchHHHHHHHHHHh----CCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHH
Confidence 11 11222233467777777642 44 46777888888899999999999999999988863 5588899999999
Q ss_pred cCChhHHHHHHHHHHh
Q 038200 445 AGQWEDVARVRELMKK 460 (523)
Q Consensus 445 ~g~~~~A~~~~~~m~~ 460 (523)
.|+.++|...|++...
T Consensus 157 ~g~~~~A~~~y~~al~ 172 (176)
T 2r5s_A 157 LGQGNAIASKYRRQLY 172 (176)
T ss_dssp HCSSCHHHHHHHHHHH
T ss_pred hCCCCcHHHHHHHHHH
Confidence 9999999998887643
No 105
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.98 E-value=1.9e-08 Score=102.98 Aligned_cols=170 Identities=8% Similarity=-0.100 Sum_probs=97.5
Q ss_pred hhcCChHHHHHHHHhcC-----------CCChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcCCCHHHHHHHHH
Q 038200 265 SKCQKVEVAQRVFDSMA-----------DRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVIC 333 (523)
Q Consensus 265 ~~~~~~~~a~~~~~~~~-----------~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~ll~ 333 (523)
...|++++|++.+++.. ..+...+..+..+|...|++++|+..|+++.+.. +-+...+..+..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~------p~~~~a~~~lg~ 475 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERV------GWRWRLVWYRAV 475 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH------CCCHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC------cchHHHHHHHHH
Confidence 44566666666666554 1234556666666666666666666666666532 223445555666
Q ss_pred HHhhcCcHHHHHHHHHHhhHhcCCCCChHHHHHHHHHHHcCCChHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHhcCC
Q 038200 334 ACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGA 413 (523)
Q Consensus 334 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 413 (523)
++...|++++|...|+++.+. .+.+...|..+..+|.+.|++++ ++.|+++.+. .+.+...+..+..++...|+
T Consensus 476 ~~~~~g~~~~A~~~~~~al~l--~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~---~P~~~~a~~~lg~~~~~~g~ 549 (681)
T 2pzi_A 476 AELLTGDYDSATKHFTEVLDT--FPGELAPKLALAATAELAGNTDE-HKFYQTVWST---NDGVISAAFGLARARSAEGD 549 (681)
T ss_dssp HHHHHTCHHHHHHHHHHHHHH--STTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHH---CTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHh---CCchHHHHHHHHHHHHHcCC
Confidence 666666666666666666652 22245555666666666666666 6666665532 12234555556666666666
Q ss_pred HHHHHHHHHHHhhcCCCChhhHHHHHHHHHhcC
Q 038200 414 VAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAG 446 (523)
Q Consensus 414 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 446 (523)
+++|...++++.+++|++..++..++.+|...|
T Consensus 550 ~~~A~~~~~~al~l~P~~~~a~~~~~~~~~~~~ 582 (681)
T 2pzi_A 550 RVGAVRTLDEVPPTSRHFTTARLTSAVTLLSGR 582 (681)
T ss_dssp HHHHHHHHHTSCTTSTTHHHHHHHHHHHTC---
T ss_pred HHHHHHHHHhhcccCcccHHHHHHHHHHHHccC
Confidence 666666666666666666666666666655433
No 106
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.97 E-value=5.7e-09 Score=95.85 Aligned_cols=227 Identities=10% Similarity=0.017 Sum_probs=154.5
Q ss_pred hcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc-cccHHHHHHHHHHHHHcCCCCchHHHHHHhhhhhhcCChHHHH
Q 038200 196 KSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGR-SARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQ 274 (523)
Q Consensus 196 ~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 274 (523)
..|++++|.+++++..+.. +.. +.. .++++.|...|.++ ...|...|++++|.
T Consensus 3 ~~~~~~eA~~~~~~a~k~~-~~~----------~~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~ 56 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYL-KTS----------FMKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAK 56 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHH-CCC----------SSSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHH
T ss_pred ccchHHHHHHHHHHHHHHc-ccc----------ccCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHH
Confidence 3567888888888776532 111 112 46777777776654 34566778888888
Q ss_pred HHHHhcCC-----CC----hHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcCCC--HHHHHHHHHHHhhcCcHHH
Q 038200 275 RVFDSMAD-----RN----LVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPD--EITFIGVICACVRAELLTE 343 (523)
Q Consensus 275 ~~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~p~--~~~~~~ll~~~~~~~~~~~ 343 (523)
..|.+..+ .+ ..+|+.+...|...|++++|+..|++........ -.|. ..++..+...|.. |++++
T Consensus 57 ~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~--g~~~~~a~~~~~lg~~~~~-g~~~~ 133 (307)
T 2ifu_A 57 DAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVEN--GTPDTAAMALDRAGKLMEP-LDLSK 133 (307)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTT--TCHHHHHHHHHHHHHHHTT-TCHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHHHHc-CCHHH
Confidence 87776643 11 3478888888999999999999998876532000 0122 3577788888888 99999
Q ss_pred HHHHHHHhhHhcCCCC----ChHHHHHHHHHHHcCCChHHHHHHHHhCCCCCC--CCCch-HHHHHHHHHHHHhcCCHHH
Q 038200 344 GRKYFRQMIDFYKIKP----NFAHYWCMANLYAGAELTEEAEEILRKMPEDND--NMSFE-SIMWVSLLSLCRFQGAVAM 416 (523)
Q Consensus 344 a~~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~-~~~~~~l~~~~~~~g~~~~ 416 (523)
|+..|++..+.+.-.. ...++..+...|.+.|++++|++.|++..+... +..+. ...+..+...+...|++++
T Consensus 134 A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~ 213 (307)
T 2ifu_A 134 AVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVA 213 (307)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHH
Confidence 9999998876421111 146788889999999999999999998874210 11111 2355666667788899999
Q ss_pred HHHHHHHHhhcCCCChh-----hHHHHHHHHHhcCChhHHHH
Q 038200 417 VERLAKSFVDMDPQDFS-----RYQFLLNVYAVAGQWEDVAR 453 (523)
Q Consensus 417 a~~~~~~~~~~~p~~~~-----~~~~l~~~~~~~g~~~~A~~ 453 (523)
|...++++. +.|.... ....++.++ ..|+.+.+..
T Consensus 214 A~~~~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 214 AQKCVRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HHHHHHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred HHHHHHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence 999999999 8886432 244555555 5677666555
No 107
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.94 E-value=1.3e-08 Score=102.27 Aligned_cols=150 Identities=7% Similarity=-0.091 Sum_probs=111.7
Q ss_pred cccHHHHHHHHHHHHHcCCCCchHHHHHHhhhhhhcCChHHHHHHHHhcCC---CChHHHHHHHHHHHhcCChHHHHHHH
Q 038200 232 SARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMAD---RNLVCWNAMILGHCIHGKPEEGIKLF 308 (523)
Q Consensus 232 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~ 308 (523)
.|++++|...++++.+.. +.+...+..+...|...|++++|.+.|++..+ .+...+..+...|...|++++|.+.|
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 478899999999988764 33578888899999999999999999998755 35678899999999999999999999
Q ss_pred HHHHhCCCCCCCcCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhHhcCCCCChHHHHHHHHHHHcC---CChHHHHHHHH
Q 038200 309 TALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGA---ELTEEAEEILR 385 (523)
Q Consensus 309 ~~m~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~A~~~~~ 385 (523)
++..+.. +.+...+..+..++...|++++|.+.|++..+. .+.+...+..+..++... |++++|.+.++
T Consensus 81 ~~al~~~------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~ 152 (568)
T 2vsy_A 81 QQASDAA------PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQL--LPEEPYITAQLLNWRRRLCDWRALDVLSAQVR 152 (568)
T ss_dssp HHHHHHC------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHH
T ss_pred HHHHhcC------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhhccccHHHHHHHHH
Confidence 9998853 334678888999999999999999999999884 344578888899999999 99999999999
Q ss_pred hCCCC
Q 038200 386 KMPED 390 (523)
Q Consensus 386 ~~~~~ 390 (523)
+..+.
T Consensus 153 ~al~~ 157 (568)
T 2vsy_A 153 AAVAQ 157 (568)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 98854
No 108
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.94 E-value=1.7e-08 Score=87.95 Aligned_cols=190 Identities=12% Similarity=0.031 Sum_probs=107.3
Q ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHHcCCCC--chHHHHHHhhhhhhcCChHHHHHHHHhcCC--CC-hH---HHHHH
Q 038200 220 KTMASVLTACGRSARFNEGRSVHGYTVRTSLKP--NIILDTALIDLYSKCQKVEVAQRVFDSMAD--RN-LV---CWNAM 291 (523)
Q Consensus 220 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~-~~---~~~~l 291 (523)
..+..+...+...|++++|...|+.+.+..... ....+..+..+|.+.|++++|+..|+++.+ |+ .. .+..+
T Consensus 5 ~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~ 84 (225)
T 2yhc_A 5 NEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMR 84 (225)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHH
Confidence 344445555666666666666666666543211 123445555566666666666666655543 22 11 23333
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCCCcCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhHhcCCCCChHHH-------
Q 038200 292 ILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHY------- 364 (523)
Q Consensus 292 i~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~------- 364 (523)
..++...+.. .+. .|..+...+...|++++|...|+++.+.+ +-+...+
T Consensus 85 g~~~~~~~~~-----~~~-----------------~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--P~~~~a~~a~~~l~ 140 (225)
T 2yhc_A 85 GLTNMALDDS-----ALQ-----------------GFFGVDRSDRDPQQARAAFSDFSKLVRGY--PNSQYTTDATKRLV 140 (225)
T ss_dssp HHHHHHHHC------------------------------------CCHHHHHHHHHHHHHHTTC--TTCTTHHHHHHHHH
T ss_pred HHHHHhhhhh-----hhh-----------------hhhccchhhcCcHHHHHHHHHHHHHHHHC--cCChhHHHHHHHHH
Confidence 3333332100 000 01111122234567777777777777632 2222221
Q ss_pred ----------HHHHHHHHcCCChHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChh
Q 038200 365 ----------WCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFS 433 (523)
Q Consensus 365 ----------~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 433 (523)
..+...|.+.|++++|+..|+++++...+.+.....+..+..++...|+.++|...++.+....|++..
T Consensus 141 ~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~~ 219 (225)
T 2yhc_A 141 FLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTLE 219 (225)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCchh
Confidence 345677889999999999999988642111112356778888999999999999999999998887543
No 109
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.93 E-value=9.3e-09 Score=80.25 Aligned_cols=116 Identities=9% Similarity=-0.072 Sum_probs=82.1
Q ss_pred cCCC-HHHHHHHHHHHhhcCcHHHHHHHHHHhhHhcCCCCChHHHHHHHHHHHcCCChHHHHHHHHhCCCCCCCCCchHH
Q 038200 321 ISPD-EITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESI 399 (523)
Q Consensus 321 ~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 399 (523)
+.|+ ...+......+.+.|++++|+..|++..+. .+.+...|..+..+|.+.|++++|++.+++.++. -+.+..
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~---~p~~~~ 82 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKR--DPENAILYSNRAACLTKLMEFQRALDDCDTCIRL---DSKFIK 82 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHH
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHh---hhhhhH
Confidence 3454 345666777777788888888888877763 3445677777777788888888888888777643 123456
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhhHHHHHHH
Q 038200 400 MWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNV 441 (523)
Q Consensus 400 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 441 (523)
.|..+..++...|++++|...++++++++|+++.++..|..+
T Consensus 83 a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~ 124 (126)
T 4gco_A 83 GYIRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNC 124 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHh
Confidence 677777777778888888888888888888777777666554
No 110
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.93 E-value=2.7e-07 Score=83.95 Aligned_cols=169 Identities=5% Similarity=-0.063 Sum_probs=126.9
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcCCCHH----HHHHHHHHHhhcCcHHHHHHHHHHhhHhcCCCCC---
Q 038200 288 WNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEI----TFIGVICACVRAELLTEGRKYFRQMIDFYKIKPN--- 360 (523)
Q Consensus 288 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~p~~~----~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~--- 360 (523)
+...+..+...|++++|..++++...... ..|+.. .+..+...+...+++++|...++++.+...-.++
T Consensus 78 l~~~i~~~~~~~~y~~a~~~~~~~l~~~~----~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~ 153 (293)
T 3u3w_A 78 FKDQVIMLCKQKRYKEIYNKVWNELKKEE----YHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQ 153 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTCC----CCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHhcccc----CChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHH
Confidence 33446778899999999999999887531 223322 2334666777888999999999999874122223
Q ss_pred -hHHHHHHHHHHHcCCChHHHHHHHHhCCCCCC---CCCch-HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCC-----
Q 038200 361 -FAHYWCMANLYAGAELTEEAEEILRKMPEDND---NMSFE-SIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQ----- 430 (523)
Q Consensus 361 -~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~----- 430 (523)
..+++.+...|...|++++|.+.++++.+.-. +..+. ..++..+...|...|++++|...+++++++.+.
T Consensus 154 ~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~ 233 (293)
T 3u3w_A 154 NLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMA 233 (293)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHH
Confidence 33688999999999999999999998873100 12232 457888888999999999999999999985432
Q ss_pred -ChhhHHHHHHHHHhcCC-hhHHHHHHHHHHh
Q 038200 431 -DFSRYQFLLNVYAVAGQ-WEDVARVRELMKK 460 (523)
Q Consensus 431 -~~~~~~~l~~~~~~~g~-~~~A~~~~~~m~~ 460 (523)
-..+|..++.+|.+.|+ +++|.+.+++...
T Consensus 234 ~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 234 LIGQLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp THHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 25689999999999995 6999999887754
No 111
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.90 E-value=5.6e-08 Score=88.56 Aligned_cols=170 Identities=6% Similarity=-0.090 Sum_probs=126.1
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcCC-CH----HHHHHHHHHHhhcCcHHHHHHHHHHhhHhcC--CC
Q 038200 286 VCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISP-DE----ITFIGVICACVRAELLTEGRKYFRQMIDFYK--IK 358 (523)
Q Consensus 286 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~p-~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~ 358 (523)
..+...+..+...|++++|.+.+.+..+.. ... +. ..+..+...+...|++++|...+++..+... ..
T Consensus 76 ~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~ 150 (293)
T 2qfc_A 76 KQFKDQVIMLCKQKRYKEIYNKVWNELKKE-----EYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGID 150 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-----CCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSC
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhccc-----cCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCc
Confidence 345566778889999999999999888754 111 11 2234455667788999999999999875311 11
Q ss_pred CC--hHHHHHHHHHHHcCCChHHHHHHHHhCCCC--CCCCCc--hHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCC--
Q 038200 359 PN--FAHYWCMANLYAGAELTEEAEEILRKMPED--NDNMSF--ESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQ-- 430 (523)
Q Consensus 359 ~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~-- 430 (523)
+. ..+|+.+...|...|++++|.+.++++.+. ..+..+ ...++..+...|...|++++|...+++++++.+.
T Consensus 151 ~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~ 230 (293)
T 2qfc_A 151 VYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRIN 230 (293)
T ss_dssp TTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcC
Confidence 11 458889999999999999999999887621 000112 2357888888999999999999999999875432
Q ss_pred ----ChhhHHHHHHHHHhcCChhHH-HHHHHHHHh
Q 038200 431 ----DFSRYQFLLNVYAVAGQWEDV-ARVRELMKK 460 (523)
Q Consensus 431 ----~~~~~~~l~~~~~~~g~~~~A-~~~~~~m~~ 460 (523)
-..+|..++.+|.+.|++++| ...+++...
T Consensus 231 ~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 231 SMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp BCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 256889999999999999999 777776643
No 112
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.90 E-value=8.3e-09 Score=83.10 Aligned_cols=103 Identities=12% Similarity=0.031 Sum_probs=88.7
Q ss_pred CCC-ChHHHHHHHHHHHcCCChHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhhH
Q 038200 357 IKP-NFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRY 435 (523)
Q Consensus 357 ~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 435 (523)
+.| +...+..+...+.+.|++++|.+.|+++... .+.+...|..+..++...|++++|...|+++++++|+++.+|
T Consensus 31 l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~---~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~ 107 (151)
T 3gyz_A 31 IPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIY---DFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPV 107 (151)
T ss_dssp SCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHH
T ss_pred CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHH
Confidence 344 3567778888899999999999999998863 233577888888899999999999999999999999999999
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCC
Q 038200 436 QFLLNVYAVAGQWEDVARVRELMKKRR 462 (523)
Q Consensus 436 ~~l~~~~~~~g~~~~A~~~~~~m~~~~ 462 (523)
..++.+|...|++++|...|++..+..
T Consensus 108 ~~lg~~~~~lg~~~eA~~~~~~al~l~ 134 (151)
T 3gyz_A 108 FHTGQCQLRLKAPLKAKECFELVIQHS 134 (151)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 999999999999999999999987753
No 113
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.90 E-value=1.5e-08 Score=87.15 Aligned_cols=160 Identities=8% Similarity=-0.017 Sum_probs=116.3
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcCCC-HHHHHH----------------HHHHHhhcCcHHHHHHHHHH
Q 038200 288 WNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPD-EITFIG----------------VICACVRAELLTEGRKYFRQ 350 (523)
Q Consensus 288 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~p~-~~~~~~----------------ll~~~~~~~~~~~a~~~~~~ 350 (523)
+......+...|++++|+..|++.+.. .|+ ...+.. +..++...|++++|...|++
T Consensus 7 ~~~~g~~~~~~g~~~~A~~~~~~al~~-------~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 79 (208)
T 3urz_A 7 MLQKVSAAIEAGQNGQAVSYFRQTIAL-------NIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKE 79 (208)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH-------CHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHh-------CCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 334455667788888888888888773 354 344555 78889999999999999999
Q ss_pred hhHhcCCCCChHHHHHHHHHHHcCCChHHHHHHHHhCCCCCCCCCc-hHHHHHHHHHHHHhcCC--HHHHHHHHHHHhhc
Q 038200 351 MIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSF-ESIMWVSLLSLCRFQGA--VAMVERLAKSFVDM 427 (523)
Q Consensus 351 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~--~~~a~~~~~~~~~~ 427 (523)
..+. .+-+...+..+..+|...|++++|.+.|+++.+. .| +...+..+...+...|+ .+.+...++++...
T Consensus 80 al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~----~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~ 153 (208)
T 3urz_A 80 LLQK--APNNVDCLEACAEMQVCRGQEKDALRMYEKILQL----EADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSP 153 (208)
T ss_dssp HHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---CC
T ss_pred HHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----CCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCC
Confidence 9884 3446788899999999999999999999998863 44 46677777777665543 44556666665543
Q ss_pred CCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 038200 428 DPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKR 461 (523)
Q Consensus 428 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 461 (523)
.| ....+..++.++...|++++|+..|++..+.
T Consensus 154 ~~-~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l 186 (208)
T 3urz_A 154 TK-MQYARYRDGLSKLFTTRYEKARNSLQKVILR 186 (208)
T ss_dssp CH-HHHHHHHHHHHHHHHHTHHHHHHHHHHHTTT
T ss_pred Cc-hhHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 33 2234566788888899999999999988554
No 114
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.89 E-value=2.5e-07 Score=83.56 Aligned_cols=228 Identities=7% Similarity=-0.012 Sum_probs=123.7
Q ss_pred CCchHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccc--cHHHHHHHHHHHHHcCCCCchHHHHHHhhhh----hhc---
Q 038200 198 GNPGCSLKLFREMMKSGFRGN-DKTMASVLTACGRSA--RFNEGRSVHGYTVRTSLKPNIILDTALIDLY----SKC--- 267 (523)
Q Consensus 198 ~~~~~a~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~--- 267 (523)
...++|+.++..++.. .|+ ...|+.-..++...+ ++++++..++.+...... +..+|+.-...+ ...
T Consensus 47 e~s~~aL~~t~~~L~~--nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk-~y~aW~~R~~iL~~~~~~l~~~ 123 (306)
T 3dra_A 47 EYSERALHITELGINE--LASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEK-NYQIWNYRQLIIGQIMELNNND 123 (306)
T ss_dssp CCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTT-CCHHHHHHHHHHHHHHHHTTTC
T ss_pred CCCHHHHHHHHHHHHH--CcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcc-cHHHHHHHHHHHHHHHHhcccc
Confidence 3346788888888774 343 445566666666666 788888888877776432 444444333333 333
Q ss_pred CChHHHHHHHHhcCC---CChHHHHHHHHHHHhcCChH--HHHHHHHHHHhCCCCCCCcCCCHHHHHHHHHHHhhcCc--
Q 038200 268 QKVEVAQRVFDSMAD---RNLVCWNAMILGHCIHGKPE--EGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAEL-- 340 (523)
Q Consensus 268 ~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~--~a~~~~~~m~~~~~~~~~~~p~~~~~~~ll~~~~~~~~-- 340 (523)
+++++++++++++.+ .|..+|+.-...+.+.|.++ ++++.++++++.. +-|...|+.-...+...+.
T Consensus 124 ~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d------~~N~sAW~~R~~ll~~l~~~~ 197 (306)
T 3dra_A 124 FDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD------LKNNSAWSHRFFLLFSKKHLA 197 (306)
T ss_dssp CCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC------TTCHHHHHHHHHHHHSSGGGC
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHhccccc
Confidence 566666666666643 45566666666666666666 6666666666643 2244455544444444444
Q ss_pred ----HHHHHHHHHHhhHhcCCCCChHHHHHHHHHHHcCCChHH-HHHHHHhCCCCCCCCCchHHHHHHHHHHHHhcCCHH
Q 038200 341 ----LTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEE-AEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVA 415 (523)
Q Consensus 341 ----~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 415 (523)
++++++.++++... .+-|...|+.+...+.+.|+..+ +.++..++.+.+..-..+...+..++..+...|+.+
T Consensus 198 ~~~~~~eEl~~~~~aI~~--~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~ 275 (306)
T 3dra_A 198 TDNTIDEELNYVKDKIVK--CPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYN 275 (306)
T ss_dssp CHHHHHHHHHHHHHHHHH--CSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHH
T ss_pred hhhhHHHHHHHHHHHHHh--CCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHH
Confidence 55666666665552 33345555555555555555333 334444444211000123344444445555555555
Q ss_pred HHHHHHHHHhh-cCCCChhhHH
Q 038200 416 MVERLAKSFVD-MDPQDFSRYQ 436 (523)
Q Consensus 416 ~a~~~~~~~~~-~~p~~~~~~~ 436 (523)
+|.++++.+.+ .+|-....|.
T Consensus 276 ~A~~~~~~l~~~~Dpir~~yW~ 297 (306)
T 3dra_A 276 ESRTVYDLLKSKYNPIRSNFWD 297 (306)
T ss_dssp HHHHHHHHHHHTTCGGGHHHHH
T ss_pred HHHHHHHHHHhccChHHHHHHH
Confidence 55555555554 4554444333
No 115
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.89 E-value=1.3e-06 Score=78.98 Aligned_cols=215 Identities=12% Similarity=0.125 Sum_probs=162.5
Q ss_pred cHHHHHHHHHHHHHcCCCCchHHHHHHhhhhhhcC--ChHHHHHHHHhcCC---CChHHHHHHHHHH----Hhc---CCh
Q 038200 234 RFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQ--KVEVAQRVFDSMAD---RNLVCWNAMILGH----CIH---GKP 301 (523)
Q Consensus 234 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~---~~~~~~~~li~~~----~~~---g~~ 301 (523)
..++|+..++.++..+. -+..+|+.-..++...+ +++++++.++.+.. .+..+|+.-...+ ... +++
T Consensus 48 ~s~~aL~~t~~~L~~nP-~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~ 126 (306)
T 3dra_A 48 YSERALHITELGINELA-SHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDP 126 (306)
T ss_dssp CSHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCT
T ss_pred CCHHHHHHHHHHHHHCc-HHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCH
Confidence 34578888888888652 25667777777777777 89999999888754 3455666654444 444 788
Q ss_pred HHHHHHHHHHHhCCCCCCCcCCCHHHHHHHHHHHhhcCcHH--HHHHHHHHhhHhcCCCCChHHHHHHHHHHHcCCC---
Q 038200 302 EEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLT--EGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAEL--- 376 (523)
Q Consensus 302 ~~a~~~~~~m~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~--~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--- 376 (523)
++++.+++++.+.. +-+..+|..-.-.+.+.|.++ +++++++++.+. -+-|...|+.-..++...|+
T Consensus 127 ~~EL~~~~~~l~~~------pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~--d~~N~sAW~~R~~ll~~l~~~~~ 198 (306)
T 3dra_A 127 YREFDILEAMLSSD------PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDT--DLKNNSAWSHRFFLLFSKKHLAT 198 (306)
T ss_dssp HHHHHHHHHHHHHC------TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHSSGGGCC
T ss_pred HHHHHHHHHHHHhC------CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhccccch
Confidence 99999999998854 345667777766777777777 899999999884 45577788777777777776
Q ss_pred ---hHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHhcCC-HHHHHHHHHHHhhcC---CCChhhHHHHHHHHHhcCChh
Q 038200 377 ---TEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGA-VAMVERLAKSFVDMD---PQDFSRYQFLLNVYAVAGQWE 449 (523)
Q Consensus 377 ---~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~a~~~~~~~~~~~---p~~~~~~~~l~~~~~~~g~~~ 449 (523)
++++++.+++++.. .+-|...|+.+...+...|+ .+.+..+.+++.+++ |.++.++..++.+|.+.|+.+
T Consensus 199 ~~~~~eEl~~~~~aI~~---~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~ 275 (306)
T 3dra_A 199 DNTIDEELNYVKDKIVK---CPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYN 275 (306)
T ss_dssp HHHHHHHHHHHHHHHHH---CSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHH
T ss_pred hhhHHHHHHHHHHHHHh---CCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHH
Confidence 88899998888754 34567788888777877777 455667888877766 778888999999999999999
Q ss_pred HHHHHHHHHHh
Q 038200 450 DVARVRELMKK 460 (523)
Q Consensus 450 ~A~~~~~~m~~ 460 (523)
+|.++++.+.+
T Consensus 276 ~A~~~~~~l~~ 286 (306)
T 3dra_A 276 ESRTVYDLLKS 286 (306)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99999998875
No 116
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.87 E-value=5.4e-08 Score=83.88 Aligned_cols=121 Identities=10% Similarity=0.036 Sum_probs=55.4
Q ss_pred HHHHhhcCcHHHHHHHHHHhhHhcCCCCChHHHHHHHHHHHcCCChHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHhc
Q 038200 332 ICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQ 411 (523)
Q Consensus 332 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 411 (523)
...+...|++++|...|+++. .|+...+..+...|...|++++|.+.+++..+. .+.+...+..+...+...
T Consensus 13 g~~~~~~~~~~~A~~~~~~a~-----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~---~~~~~~~~~~lg~~~~~~ 84 (213)
T 1hh8_A 13 GVLAADKKDWKGALDAFSAVQ-----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINR---DKHLAVAYFQRGMLYYQT 84 (213)
T ss_dssp HHHHHHTTCHHHHHHHHHTSS-----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHhCCHHHHHHHHHHHc-----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CccchHHHHHHHHHHHHc
Confidence 334444444444444444432 234444444444444445555555444444422 112233444444444444
Q ss_pred CCHHHHHHHHHHHhhcCCCCh----------------hhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 038200 412 GAVAMVERLAKSFVDMDPQDF----------------SRYQFLLNVYAVAGQWEDVARVRELMKK 460 (523)
Q Consensus 412 g~~~~a~~~~~~~~~~~p~~~----------------~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 460 (523)
|++++|...++++.+..|.+. .++..++.+|...|++++|...+++..+
T Consensus 85 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 149 (213)
T 1hh8_A 85 EKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATS 149 (213)
T ss_dssp TCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred ccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 555555555555544444333 4445555555555555555555554433
No 117
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.87 E-value=1.7e-07 Score=80.63 Aligned_cols=159 Identities=8% Similarity=-0.016 Sum_probs=97.6
Q ss_pred CChhHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccc----cHHHHHHHHHHHHHcCCCCchHHH
Q 038200 182 RNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSA----RFNEGRSVHGYTVRTSLKPNIILD 257 (523)
Q Consensus 182 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~----~~~~a~~~~~~~~~~~~~~~~~~~ 257 (523)
.+..++..+...|...+++++|+.+|++..+.| +...+..+...|.. + ++++|...|++..+.+ +...+
T Consensus 16 g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~g---~~~a~ 88 (212)
T 3rjv_A 16 GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAVEAG---SKSGE 88 (212)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHTT---CHHHH
T ss_pred CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHCC---CHHHH
Confidence 455666666667777777777777777776654 44555556666665 5 6777777777776654 44555
Q ss_pred HHHhhhhhh----cCChHHHHHHHHhcCCCC-----hHHHHHHHHHHHh----cCChHHHHHHHHHHHhCCCCCCCcCCC
Q 038200 258 TALIDLYSK----CQKVEVAQRVFDSMADRN-----LVCWNAMILGHCI----HGKPEEGIKLFTALVNGTVAGGSISPD 324 (523)
Q Consensus 258 ~~l~~~~~~----~~~~~~a~~~~~~~~~~~-----~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~~~~~~~~p~ 324 (523)
..|...|.. .+++++|+..|++..+.+ ...+..|...|.. .+++++|+.+|++..+.+ .+
T Consensus 89 ~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~-------~~ 161 (212)
T 3rjv_A 89 IVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSLS-------RT 161 (212)
T ss_dssp HHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHTS-------CT
T ss_pred HHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcC-------CC
Confidence 556666655 566777777777665532 4566666666666 566777777777666642 23
Q ss_pred HHHHHHHHHHHhhc-C-----cHHHHHHHHHHhhHh
Q 038200 325 EITFIGVICACVRA-E-----LLTEGRKYFRQMIDF 354 (523)
Q Consensus 325 ~~~~~~ll~~~~~~-~-----~~~~a~~~~~~~~~~ 354 (523)
...+..|...|... | +.++|..+|++..+.
T Consensus 162 ~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~ 197 (212)
T 3rjv_A 162 GYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLE 197 (212)
T ss_dssp THHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHc
Confidence 33455555555432 2 666666666666654
No 118
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.86 E-value=1.1e-07 Score=86.28 Aligned_cols=166 Identities=8% Similarity=-0.010 Sum_probs=114.5
Q ss_pred CCCHHHHHHHHHHHhccccHHHHHHHHHHHHHcCCCCchHHHHHHhhhhhhcCChHHHHHHHHhcCC--CChHHH-HHHH
Q 038200 216 RGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMAD--RNLVCW-NAMI 292 (523)
Q Consensus 216 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~-~~li 292 (523)
+.+...+..+...+...|++++|...|+++.+.. +.+...+..+..++...|++++|...++++.. |+.... ....
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~ 192 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQ 192 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHH
Confidence 3344556667777778888888888888887764 23567777788888888888888888888765 433322 2223
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCCCCcCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhHhcCCCCChHHHHHHHHHHH
Q 038200 293 LGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYA 372 (523)
Q Consensus 293 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 372 (523)
..+...++.++|...+++..... +.+...+..+...+...|++++|...|+++.+...-..+...+..++..|.
T Consensus 193 ~~l~~~~~~~~a~~~l~~al~~~------P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~ 266 (287)
T 3qou_A 193 IELLXQAADTPEIQQLQQQVAEN------PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILA 266 (287)
T ss_dssp HHHHHHHTSCHHHHHHHHHHHHC------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHH
T ss_pred HHHHhhcccCccHHHHHHHHhcC------CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHH
Confidence 33556677777888888877743 334667777777888888888888888888774111122567777888888
Q ss_pred cCCChHHHHHHHHhCC
Q 038200 373 GAELTEEAEEILRKMP 388 (523)
Q Consensus 373 ~~g~~~~A~~~~~~~~ 388 (523)
..|+.++|...+++..
T Consensus 267 ~~g~~~~a~~~~r~al 282 (287)
T 3qou_A 267 ALGTGDALASXYRRQL 282 (287)
T ss_dssp HHCTTCHHHHHHHHHH
T ss_pred HcCCCCcHHHHHHHHH
Confidence 8888777777776543
No 119
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.86 E-value=4.4e-08 Score=80.55 Aligned_cols=130 Identities=13% Similarity=-0.015 Sum_probs=108.5
Q ss_pred HHHHHHHHHHhhcCcHHHHHHHHHHhhHhcCCCCChHHHHHHHHHHHcCCChHHHHHHHHhCCCCCCCCCchHHHHHHHH
Q 038200 326 ITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLL 405 (523)
Q Consensus 326 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~ 405 (523)
..+..+...+...|++++|...|++..+. .+.+...+..+..++...|++++|.+.+++..+. .+.+...+..+.
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~---~~~~~~~~~~~a 88 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIEL---DKKYIKGYYRRA 88 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CcccHHHHHHHH
Confidence 35667777888999999999999998874 3446788889999999999999999999998853 234567888888
Q ss_pred HHHHhcCCHHHHHHHHHHHhhcCCCChhhHHHHHHH--HHhcCChhHHHHHHHHHHh
Q 038200 406 SLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNV--YAVAGQWEDVARVRELMKK 460 (523)
Q Consensus 406 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~--~~~~g~~~~A~~~~~~m~~ 460 (523)
..+...|++++|...++++.+..|.++..+..+..+ +...|++++|+..+++...
T Consensus 89 ~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 89 ASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 899999999999999999999999988877555444 8888999999999887654
No 120
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.85 E-value=9.8e-08 Score=87.54 Aligned_cols=231 Identities=9% Similarity=-0.018 Sum_probs=151.9
Q ss_pred hcCCHHHHHHHHhcCCCCChhHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHHH
Q 038200 165 RSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGY 244 (523)
Q Consensus 165 ~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 244 (523)
..|++++|.+++++..+.....+ +...++++.|...|.+. ...|...|++++|...|.+
T Consensus 3 ~~~~~~eA~~~~~~a~k~~~~~~------~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~~ 61 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYLKTSF------MKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAKDAYLQ 61 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHHCCCS------SSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHccccc------cCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHH
Confidence 35677888888876653110000 11146777777777654 3456677888888888877
Q ss_pred HHHcCC---CC--chHHHHHHhhhhhhcCChHHHHHHHHhcCC-------C--ChHHHHHHHHHHHhcCChHHHHHHHHH
Q 038200 245 TVRTSL---KP--NIILDTALIDLYSKCQKVEVAQRVFDSMAD-------R--NLVCWNAMILGHCIHGKPEEGIKLFTA 310 (523)
Q Consensus 245 ~~~~~~---~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-------~--~~~~~~~li~~~~~~g~~~~a~~~~~~ 310 (523)
..+... .+ -..+++.+..+|...|++++|+..|++..+ + -..++..+...|.. |++++|+..|++
T Consensus 62 al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~ 140 (307)
T 2ifu_A 62 EAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQ 140 (307)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHH
Confidence 665311 11 145777788888888888888888876532 1 13567888888888 999999999998
Q ss_pred HHhCCCCCCCcCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhHhcC---CCCC-hHHHHHHHHHHHcCCChHHHHHHHHh
Q 038200 311 LVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYK---IKPN-FAHYWCMANLYAGAELTEEAEEILRK 386 (523)
Q Consensus 311 m~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~---~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~ 386 (523)
........+.......++..+...+...|++++|+..|++..+... ..+. ...+..++.++...|++++|...|++
T Consensus 141 Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~ 220 (307)
T 2ifu_A 141 AAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRE 220 (307)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 8763200000000145788888999999999999999999887421 1111 23666777888889999999999999
Q ss_pred CCCCCCCCCch--HHHHHHHHHHHHhcCCHHHHHH
Q 038200 387 MPEDNDNMSFE--SIMWVSLLSLCRFQGAVAMVER 419 (523)
Q Consensus 387 ~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~ 419 (523)
.. ....+... ......++.++ ..|+.+.+..
T Consensus 221 al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 221 SY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred Hh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence 87 43333222 23344455555 5677666555
No 121
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.84 E-value=8.3e-09 Score=83.18 Aligned_cols=99 Identities=10% Similarity=0.017 Sum_probs=80.4
Q ss_pred ChHHHHHHHHHHHcCCChHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhhHHHHH
Q 038200 360 NFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLL 439 (523)
Q Consensus 360 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 439 (523)
+...+..+...+...|++++|...|+++... .+.+...|..+..++...|++++|...++++++++|+++.++..++
T Consensus 20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg 96 (148)
T 2vgx_A 20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVL---DHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAA 96 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHc---CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHH
Confidence 4556677788888888888888888887753 2335677777778888888888898888888888888888888888
Q ss_pred HHHHhcCChhHHHHHHHHHHhC
Q 038200 440 NVYAVAGQWEDVARVRELMKKR 461 (523)
Q Consensus 440 ~~~~~~g~~~~A~~~~~~m~~~ 461 (523)
.+|...|++++|...|++..+.
T Consensus 97 ~~~~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 97 ECLLQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHH
Confidence 8888889999988888887664
No 122
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.84 E-value=3e-08 Score=77.32 Aligned_cols=102 Identities=11% Similarity=0.019 Sum_probs=90.8
Q ss_pred CCCC-hHHHHHHHHHHHcCCChHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhhH
Q 038200 357 IKPN-FAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRY 435 (523)
Q Consensus 357 ~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 435 (523)
+.|+ ...+......|.+.|++++|++.|++.++. .+.+...|..+..++...|++++|...++++++++|+++.+|
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~ 84 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKR---DPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGY 84 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHH
Confidence 4454 466778899999999999999999998863 244678888899999999999999999999999999999999
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhC
Q 038200 436 QFLLNVYAVAGQWEDVARVRELMKKR 461 (523)
Q Consensus 436 ~~l~~~~~~~g~~~~A~~~~~~m~~~ 461 (523)
..++.+|...|++++|++.|++..+.
T Consensus 85 ~~lg~~~~~~~~~~~A~~~~~~al~l 110 (126)
T 4gco_A 85 IRKAACLVAMREWSKAQRAYEDALQV 110 (126)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 99999999999999999999998764
No 123
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.83 E-value=1.4e-07 Score=78.51 Aligned_cols=153 Identities=10% Similarity=0.064 Sum_probs=69.1
Q ss_pred HHHHHHHHHccCChHHHHHHHhhcC---CCCcchHHHHHHHHHhcCCHHHHHHHHhcCCC--CChhHHHHHHHH-HHhcC
Q 038200 125 MNSLINMYGCFGAMDCARNMFVQMS---PRDLISWNSIVSGHVRSGDMSAAHELFDIMPE--RNVVSWNIMISG-YSKSG 198 (523)
Q Consensus 125 ~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~li~~-~~~~~ 198 (523)
+..+...+.+.|++++|...|++.. +.+...+..+...+...|++++|+..|++... |+...+..+... +...+
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~ 88 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQDNSYKSLIAKLELHQQA 88 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccCChHHHHHHHHHHHHhhc
Confidence 3344444555555555555555554 22344455555555555555555555555543 222211111111 11112
Q ss_pred CchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHcCCCC-chHHHHHHhhhhhhcCChHHHHHHH
Q 038200 199 NPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKP-NIILDTALIDLYSKCQKVEVAQRVF 277 (523)
Q Consensus 199 ~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~ 277 (523)
....|...+++..+.. +-+...+..+..++...|++++|...|+++.+....+ +...+..+..++...|+.++|...|
T Consensus 89 ~~~~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y 167 (176)
T 2r5s_A 89 AESPELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKY 167 (176)
T ss_dssp TSCHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHH
T ss_pred ccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHH
Confidence 2223445555554431 1234445555555555555555555555555443221 1334444455555555555554444
Q ss_pred H
Q 038200 278 D 278 (523)
Q Consensus 278 ~ 278 (523)
+
T Consensus 168 ~ 168 (176)
T 2r5s_A 168 R 168 (176)
T ss_dssp H
T ss_pred H
Confidence 4
No 124
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.82 E-value=5e-08 Score=76.74 Aligned_cols=121 Identities=7% Similarity=-0.111 Sum_probs=97.6
Q ss_pred CCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhHhcCCCCChHHHHHHHHHHHcCCChHHHHHHHHhCCCCCCCCCchHHHH
Q 038200 322 SPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMW 401 (523)
Q Consensus 322 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 401 (523)
+.+...+..+...+...|++++|...|++..+. .+.+...+..+...|...|++++|.+.++++.+. .+.+...+
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~---~~~~~~~~ 87 (133)
T 2lni_A 13 PDLALMVKNKGNECFQKGDYPQAMKHYTEAIKR--NPKDAKLYSNRAACYTKLLEFQLALKDCEECIQL---EPTFIKGY 87 (133)
T ss_dssp SCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTT--CTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHH---CTTCHHHH
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHh---CCCchHHH
Confidence 334567788888888899999999999988763 3446778888888888999999999999888753 23356777
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhhHHHHHHHHHhcCC
Q 038200 402 VSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQ 447 (523)
Q Consensus 402 ~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 447 (523)
..+...+...|++++|...++++.+.+|.+...+..++.++...|+
T Consensus 88 ~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 88 TRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence 7888888899999999999999999999888888888888877664
No 125
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.81 E-value=7e-08 Score=74.79 Aligned_cols=117 Identities=18% Similarity=0.175 Sum_probs=97.2
Q ss_pred HHHHHHHHHHHhhcCcHHHHHHHHHHhhHhcCCCCChHHHHHHHHHHHcCCChHHHHHHHHhCCCCCCCCCchHHHHHHH
Q 038200 325 EITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSL 404 (523)
Q Consensus 325 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l 404 (523)
...+..+...+...|++++|..+++++.+. .+.+...+..+...+...|++++|..+++++... .+.+...+..+
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~l 83 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL---DPNNAEAWYNL 83 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh---CCccHHHHHHH
Confidence 467778888888999999999999998874 3446778888899999999999999999988753 23456777888
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhcCCCChhhHHHHHHHHHhcC
Q 038200 405 LSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAG 446 (523)
Q Consensus 405 ~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 446 (523)
...+...|++++|...++++.+..|+++..+..++.++...|
T Consensus 84 a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 84 GNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence 888999999999999999999999998888888888877654
No 126
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.81 E-value=6.7e-08 Score=75.63 Aligned_cols=121 Identities=9% Similarity=-0.061 Sum_probs=103.0
Q ss_pred CHHHHHHHHHHHhhcCcHHHHHHHHHHhhHhcCCCCChHHHHHHHHHHHcCCChHHHHHHHHhCCCCCCCCCchHHHHHH
Q 038200 324 DEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVS 403 (523)
Q Consensus 324 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 403 (523)
+...+..+...+...|++++|...++++.+. .+.+...+..+...+...|++++|.+.+++..+. .+.+...+..
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~ 85 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIEL--NPANAVYFCNRAAAYSKLGNYAGAVQDCERAICI---DPAYSKAYGR 85 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhc---CccCHHHHHH
Confidence 4557777888889999999999999999874 3446788888999999999999999999998853 2334677888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChh
Q 038200 404 LLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWE 449 (523)
Q Consensus 404 l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 449 (523)
+...+...|++++|...++++.+..|+++..+..++.++...|+++
T Consensus 86 ~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~ 131 (131)
T 2vyi_A 86 MGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREAP 131 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcCC
Confidence 8889999999999999999999999999999999999999888763
No 127
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.80 E-value=2e-07 Score=80.29 Aligned_cols=144 Identities=11% Similarity=-0.030 Sum_probs=83.1
Q ss_pred HHHhhhhhhcCChHHHHHHHHhcCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcCCCHHHHHHHHHHHhh
Q 038200 258 TALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVR 337 (523)
Q Consensus 258 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~ll~~~~~ 337 (523)
..+...+...|++++|+..|++...++...|..+...|...|++++|+..|++..... +.+...+..+..++..
T Consensus 10 ~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~------~~~~~~~~~lg~~~~~ 83 (213)
T 1hh8_A 10 WNEGVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD------KHLAVAYFQRGMLYYQ 83 (213)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------ccchHHHHHHHHHHHH
Confidence 3445555566666666666666665566666666666666666666666666666532 2234555556666666
Q ss_pred cCcHHHHHHHHHHhhHhcCCCCChHHHHHHHHHHHcCCChHHHHHHHHhCCCCCCCCCc-hHHHHHHHHHHHHhcCCHHH
Q 038200 338 AELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSF-ESIMWVSLLSLCRFQGAVAM 416 (523)
Q Consensus 338 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~ 416 (523)
.|++++|...|+++.+. .+.+.... +. .... ...| ....+..+..++...|++++
T Consensus 84 ~~~~~~A~~~~~~al~~--~~~~~~~~------~~------------~~~~----~~~~~~~~~~~~l~~~~~~~g~~~~ 139 (213)
T 1hh8_A 84 TEKYDLAIKDLKEALIQ--LRGNQLID------YK------------ILGL----QFKLFACEVLYNIAFMYAKKEEWKK 139 (213)
T ss_dssp TTCHHHHHHHHHHHHHT--TTTCSEEE------CG------------GGTB----CCEEEHHHHHHHHHHHHHHTTCHHH
T ss_pred cccHHHHHHHHHHHHHh--CCCccHHH------HH------------Hhcc----ccCccchHHHHHHHHHHHHccCHHH
Confidence 66666666666666552 11111000 00 0000 0223 24566667777788888888
Q ss_pred HHHHHHHHhhcCCCC
Q 038200 417 VERLAKSFVDMDPQD 431 (523)
Q Consensus 417 a~~~~~~~~~~~p~~ 431 (523)
|...++++.+..|++
T Consensus 140 A~~~~~~al~~~p~~ 154 (213)
T 1hh8_A 140 AEEQLALATSMKSEP 154 (213)
T ss_dssp HHHHHHHHHTTCCSG
T ss_pred HHHHHHHHHHcCccc
Confidence 888888888887754
No 128
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.77 E-value=1.6e-08 Score=91.33 Aligned_cols=189 Identities=7% Similarity=-0.093 Sum_probs=102.6
Q ss_pred HHHHHHhhhhhhcCChHHHHHHHHhcCC---CChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcCCCHHHHHHH
Q 038200 255 ILDTALIDLYSKCQKVEVAQRVFDSMAD---RNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGV 331 (523)
Q Consensus 255 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~l 331 (523)
..+..+...+...|++++|+..|++..+ .+...|..+..+|...|++++|+..+++..+.. +.+...+..+
T Consensus 5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~------p~~~~~~~~l 78 (281)
T 2c2l_A 5 QELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELD------GQSVKAHFFL 78 (281)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC------TTCHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC------CCCHHHHHHH
Confidence 3444444555555555555555554422 244556666666666666666666666666532 2234566666
Q ss_pred HHHHhhcCcHHHHHHHHHHhhHhcCCCCC-hHHHHHHHHHHHcCCChHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHh
Q 038200 332 ICACVRAELLTEGRKYFRQMIDFYKIKPN-FAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRF 410 (523)
Q Consensus 332 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 410 (523)
..++...|++++|...|+++.+. .|+ ...+...+....+..+...... ..... ...+..+...+ ..+ .
T Consensus 79 g~~~~~~g~~~~A~~~~~~al~l---~p~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-----~~~~~~i~~~l-~~l-~ 147 (281)
T 2c2l_A 79 GQCQLEMESYDEAIANLQRAYSL---AKEQRLNFGDDIPSALRIAKKKRWNS-IEERR-----IHQESELHSYL-TRL-I 147 (281)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH---HHHTTCCCCSHHHHHHHHHHHHHHHH-HHHTC-----CCCCCHHHHHH-HHH-H
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh---CccchhhHHHHHHHHHHHHHHHHHHH-HHHHH-----HhhhHHHHHHH-HHH-H
Confidence 66666777777777766666553 111 0011111111111111111111 11112 22333332222 222 2
Q ss_pred cCCHHHHHHHHHHHhhcCCCChhhHHHHHHHHHhc-CChhHHHHHHHHHHh
Q 038200 411 QGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVA-GQWEDVARVRELMKK 460 (523)
Q Consensus 411 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~-g~~~~A~~~~~~m~~ 460 (523)
.|+.++|.+.++.+.+.+|++......+...+.+. +++++|.++|.+..+
T Consensus 148 ~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~ 198 (281)
T 2c2l_A 148 AAERERELEECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDE 198 (281)
T ss_dssp HHHHHHHHTTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHHHHHHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 67888888888888888888777777777777666 678888888887755
No 129
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.75 E-value=6.9e-08 Score=89.65 Aligned_cols=129 Identities=8% Similarity=-0.077 Sum_probs=99.1
Q ss_pred HHHHHHHHHhhcCcHHHHHHHHHHhhHhcCCCCC---------------hHHHHHHHHHHHcCCChHHHHHHHHhCCCCC
Q 038200 327 TFIGVICACVRAELLTEGRKYFRQMIDFYKIKPN---------------FAHYWCMANLYAGAELTEEAEEILRKMPEDN 391 (523)
Q Consensus 327 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~---------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 391 (523)
.+..+...+.+.|++++|...|++..+. .+.+ ...|..+..+|.+.|++++|++.++++++.
T Consensus 149 ~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~- 225 (336)
T 1p5q_A 149 IVKERGTVYFKEGKYKQALLQYKKIVSW--LEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL- 225 (336)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHH--TTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHH--hhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-
Confidence 4444444555555555555555555442 1111 478888999999999999999999998864
Q ss_pred CCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChhHH-HHHHHHHHh
Q 038200 392 DNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDV-ARVRELMKK 460 (523)
Q Consensus 392 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A-~~~~~~m~~ 460 (523)
.+.+...+..+..++...|++++|...++++++++|+++.++..++.++.+.|++++| ...++.|..
T Consensus 226 --~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~ 293 (336)
T 1p5q_A 226 --DSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMFE 293 (336)
T ss_dssp --CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2335778888889999999999999999999999999999999999999999999998 446666643
No 130
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.75 E-value=2.8e-08 Score=82.91 Aligned_cols=123 Identities=7% Similarity=0.036 Sum_probs=96.4
Q ss_pred HhhcCcHHHHHHHHHHhhHhcCCCCChHHHHHHHHHHHcCCChHHHHHHHHhCCCCCCCCCchHHHHHHHHHH-HHhcCC
Q 038200 335 CVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSL-CRFQGA 413 (523)
Q Consensus 335 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~ 413 (523)
+...|++++|...+++..+. .+.+...+..+...|...|++++|.+.++++.+. .+.+...+..+... +...|+
T Consensus 20 ~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~la~~l~~~~~~ 94 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRA--NPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQL---RGENAELYAALATVLYYQASQ 94 (177)
T ss_dssp CC-----CCCCHHHHHHHHH--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---HCSCHHHHHHHHHHHHHHTTT
T ss_pred hhhccCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc---CCCCHHHHHHHHHHHHHhcCC
Confidence 34567888888888888774 3446788888889999999999999999888753 12356667777777 778888
Q ss_pred H--HHHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 038200 414 V--AMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRR 462 (523)
Q Consensus 414 ~--~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 462 (523)
+ ++|...++++++.+|+++.++..++.+|...|++++|...+++..+..
T Consensus 95 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 145 (177)
T 2e2e_A 95 HMTAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLN 145 (177)
T ss_dssp CCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred cchHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC
Confidence 8 999999999999999888899999999999999999999999887754
No 131
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.73 E-value=4.8e-08 Score=78.13 Aligned_cols=99 Identities=8% Similarity=-0.048 Sum_probs=77.9
Q ss_pred ChHHHHHHHHHHHcCCChHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhhHHHHH
Q 038200 360 NFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLL 439 (523)
Q Consensus 360 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 439 (523)
+...+..+...+.+.|++++|.+.|+++... .+.+...|..+..++...|++++|...++++++++|+++..+..++
T Consensus 17 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg 93 (142)
T 2xcb_A 17 TLEQLYALGFNQYQAGKWDDAQKIFQALCML---DHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAA 93 (142)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccHHHHHHHHHHHHHh---CCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHH
Confidence 3455666777788888888888888887753 2335667777777888888888888888888888888888888888
Q ss_pred HHHHhcCChhHHHHHHHHHHhC
Q 038200 440 NVYAVAGQWEDVARVRELMKKR 461 (523)
Q Consensus 440 ~~~~~~g~~~~A~~~~~~m~~~ 461 (523)
.+|...|++++|...|++..+.
T Consensus 94 ~~~~~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 94 ECHLQLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHh
Confidence 8888888888888888887664
No 132
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.73 E-value=1.1e-06 Score=77.47 Aligned_cols=196 Identities=10% Similarity=-0.091 Sum_probs=130.0
Q ss_pred ccccHHHHHHHHHHHHHcCCCCchHHHHHH-------hhhhhhcCChHHHHHHHHhcCC--C-------C----------
Q 038200 231 RSARFNEGRSVHGYTVRTSLKPNIILDTAL-------IDLYSKCQKVEVAQRVFDSMAD--R-------N---------- 284 (523)
Q Consensus 231 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-------~~~~~~~~~~~~a~~~~~~~~~--~-------~---------- 284 (523)
..++...|.+.|.++.+... -....|..+ ...+...++..+++..+.+-.. | +
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP-~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~~ 96 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDE-SACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDITY 96 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCEE
T ss_pred cCCCHHHHHHHHHHHHHhCh-hhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCccccccc
Confidence 35666666666666666532 134445444 2333333334444444443322 1 1
Q ss_pred -----hHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhHhcCCCC
Q 038200 285 -----LVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKP 359 (523)
Q Consensus 285 -----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 359 (523)
...+..+...+...|++++|.++|..+...+ |+......+...+.+.+++++|+..|+..... ..|
T Consensus 97 ~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~-------p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~--~d~ 167 (282)
T 4f3v_A 97 PVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG-------SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKW--PDK 167 (282)
T ss_dssp ECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT-------CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGC--SCH
T ss_pred ccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-------CchHHHHHHHHHHHHcCCHHHHHHHHHHhhcc--CCc
Confidence 1234456677888899999999998887643 65545566666788899999999999866542 122
Q ss_pred C--hHHHHHHHHHHHcCCChHHHHHHHHhCCCCCCCCCc--hHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhhH
Q 038200 360 N--FAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSF--ESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRY 435 (523)
Q Consensus 360 ~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 435 (523)
. ...+..+..++...|++++|++.|++.... ...| ..........++...|+.++|...|+++...+|+ +.+.
T Consensus 168 ~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g--~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~ 244 (282)
T 4f3v_A 168 FLAGAAGVAHGVAAANLALFTEAERRLTEANDS--PAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVA 244 (282)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--TTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHH
T ss_pred ccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcC--CCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHH
Confidence 1 346777888999999999999999998732 1214 3345666777889999999999999999999997 6665
Q ss_pred HHHH
Q 038200 436 QFLL 439 (523)
Q Consensus 436 ~~l~ 439 (523)
..|.
T Consensus 245 ~aL~ 248 (282)
T 4f3v_A 245 AALK 248 (282)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 5553
No 133
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.70 E-value=1.7e-06 Score=84.47 Aligned_cols=360 Identities=8% Similarity=-0.070 Sum_probs=197.9
Q ss_pred hCC-CchHHHHHHHHHHHCCCCCCcccHHHHHHHHHccCCchHHHHHHHHHHHhCCCCCchHHHHHHHHHHccCC-hHHH
Q 038200 64 NSC-VPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGA-MDCA 141 (523)
Q Consensus 64 ~~~-~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A 141 (523)
+.| +++.|..+|+.+... -|. ++++.+..+|++.+.. .|+...|...+....+.++ .+..
T Consensus 6 ~~~~~i~~aR~vyer~l~~--~P~--------------~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~i 67 (493)
T 2uy1_A 6 KMGVELSSPSAIMEHARRL--YMS--------------KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFKL 67 (493)
T ss_dssp ------CCHHHHHHHHHHH--HHT--------------TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----CT
T ss_pred HcCcchHHHHHHHHHHHHH--CCC--------------CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHHH
Confidence 345 477888888887763 233 8999999999999874 4699999999988877663 3445
Q ss_pred HHHHhhcC------CCCcchHHHHHHHHH----hcCCHHHHHHHHhcCCC-CC--h-hHHHHHHHHHHhcC---------
Q 038200 142 RNMFVQMS------PRDLISWNSIVSGHV----RSGDMSAAHELFDIMPE-RN--V-VSWNIMISGYSKSG--------- 198 (523)
Q Consensus 142 ~~~~~~~~------~~~~~~~~~ll~~~~----~~~~~~~a~~~~~~~~~-~~--~-~~~~~li~~~~~~~--------- 198 (523)
..+|+... ..+...|...+..+. ..++.+.+..+|++... |. . ..|...... .+..
T Consensus 68 ~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~f-E~~~~~~~~~~~~ 146 (493)
T 2uy1_A 68 YEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENF-ELELNKITGKKIV 146 (493)
T ss_dssp HHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHH-HHHHCHHHHHHHH
T ss_pred HHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHH-HHHhccccHHHHH
Confidence 56666543 235566777666543 24678888889888755 32 1 223322221 1111
Q ss_pred -----CchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc--c--c---HHHHHHHHHHHHHcCCCCchHHHHHHhhhhhh
Q 038200 199 -----NPGCSLKLFREMMKSGFRGNDKTMASVLTACGRS--A--R---FNEGRSVHGYTVRTSLKPNIILDTALIDLYSK 266 (523)
Q Consensus 199 -----~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~--~--~---~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 266 (523)
.+..|..+++.+...-...+...|...+.--... + + .+.+..+|++++... +.+..+|...+..+..
T Consensus 147 ~~~~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~ 225 (493)
T 2uy1_A 147 GDTLPIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSF-YYAEEVYFFYSEYLIG 225 (493)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence 1222333344333210001222343333322211 0 0 334566777777653 3456667777777777
Q ss_pred cCChHHHHHHHHhcCC-CCh-HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCC----CCCcCC---CHHHHHHHHHHHhh
Q 038200 267 CQKVEVAQRVFDSMAD-RNL-VCWNAMILGHCIHGKPEEGIKLFTALVNGTVA----GGSISP---DEITFIGVICACVR 337 (523)
Q Consensus 267 ~~~~~~a~~~~~~~~~-~~~-~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~----~~~~~p---~~~~~~~ll~~~~~ 337 (523)
.|+.+.|..+|++... |.. ..|. .|+...+.++. ++.+...-.. .++..+ ....|...+..+.+
T Consensus 226 ~~~~~~ar~i~erAi~~P~~~~l~~----~y~~~~e~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r 298 (493)
T 2uy1_A 226 IGQKEKAKKVVERGIEMSDGMFLSL----YYGLVMDEEAV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLK 298 (493)
T ss_dssp TTCHHHHHHHHHHHHHHCCSSHHHH----HHHHHTTCTHH---HHHHHHHTC----------CHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHhCCCcHHHHH----HHHhhcchhHH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHH
Confidence 7888888888776532 322 2222 22222111221 2222221000 000011 12345555555556
Q ss_pred cCcHHHHHHHHHHhhHhcCCCCChHHHHHHHHHHHcCC-ChHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHhcCCHHH
Q 038200 338 AELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAE-LTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAM 416 (523)
Q Consensus 338 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 416 (523)
.+..+.|..+|+++ +. ...+...|...+..-...+ +.+.|..+|+...+. .+.+...+...+......|+.+.
T Consensus 299 ~~~~~~AR~i~~~A-~~--~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~---~~~~~~~~~~yid~e~~~~~~~~ 372 (493)
T 2uy1_A 299 KRGLELFRKLFIEL-GN--EGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLK---HPDSTLLKEEFFLFLLRIGDEEN 372 (493)
T ss_dssp HHCHHHHHHHHHHH-TT--SCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHTCHHH
T ss_pred cCCHHHHHHHHHHh-hC--CCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHcCCHHH
Confidence 77788888888888 32 1234444443333322223 588888888887753 22223445556666677788888
Q ss_pred HHHHHHHHhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 038200 417 VERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKK 460 (523)
Q Consensus 417 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 460 (523)
|..+++.+. .....|...+..-...|+.+.+..++++..+
T Consensus 373 aR~l~er~~----k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 373 ARALFKRLE----KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHHHHSC----CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHH----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 888888872 3556777777776777888888887777764
No 134
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.68 E-value=1.3e-07 Score=73.66 Aligned_cols=97 Identities=6% Similarity=-0.043 Sum_probs=66.7
Q ss_pred HHHHHHHHHHHcCCChHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhhHHHHHHH
Q 038200 362 AHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNV 441 (523)
Q Consensus 362 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 441 (523)
..+..+...+.+.|++++|++.|++..+. .+.+...+..+..++...|++++|...++++++++|+++.++..++.+
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 81 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKR---APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATA 81 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence 44555666667777777777777776642 123456666666677777777777777777777777777777777777
Q ss_pred HHhcCChhHHHHHHHHHHhC
Q 038200 442 YAVAGQWEDVARVRELMKKR 461 (523)
Q Consensus 442 ~~~~g~~~~A~~~~~~m~~~ 461 (523)
|...|++++|...+++..+.
T Consensus 82 ~~~~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 82 QIAVKEYASALETLDAARTK 101 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhCHHHHHHHHHHHHHh
Confidence 77777777777777766553
No 135
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.67 E-value=7.8e-08 Score=77.41 Aligned_cols=109 Identities=7% Similarity=-0.097 Sum_probs=87.7
Q ss_pred CCC-HHHHHHHHHHHhhcCcHHHHHHHHHHhhHhcCCCCChHHHHHHHHHHHcCCChHHHHHHHHhCCCCCCCCCchHHH
Q 038200 322 SPD-EITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIM 400 (523)
Q Consensus 322 ~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 400 (523)
.|+ ...+..+...+...|++++|...|+++... -+.+...|..+..+|...|++++|++.|+++... .+.+...
T Consensus 17 ~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l---~p~~~~~ 91 (148)
T 2vgx_A 17 SSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVL--DHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVM---DIXEPRF 91 (148)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---STTCTHH
T ss_pred CHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHc--CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc---CCCCchH
Confidence 353 456677778888999999999999998873 3446788888899999999999999999998753 1334667
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhhH
Q 038200 401 WVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRY 435 (523)
Q Consensus 401 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 435 (523)
+..+..++...|++++|...+++++++.|+++...
T Consensus 92 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 126 (148)
T 2vgx_A 92 PFHAAECLLQXGELAEAESGLFLAQELIANXPEFX 126 (148)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGGGH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCCcch
Confidence 77888889999999999999999999988877553
No 136
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.67 E-value=1.5e-07 Score=71.27 Aligned_cols=100 Identities=11% Similarity=-0.007 Sum_probs=84.3
Q ss_pred ChHHHHHHHHHHHcCCChHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCC--ChhhHHH
Q 038200 360 NFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQ--DFSRYQF 437 (523)
Q Consensus 360 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~--~~~~~~~ 437 (523)
+...+..+...+...|++++|...++++.+. .+.+...+..+...+...|++++|...++++.+..|. ++.++..
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~---~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 81 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQL---DPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAA 81 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh---CcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHH
Confidence 4566777888888899999999999887753 2335667778888889999999999999999999998 8899999
Q ss_pred HHHHHHhc-CChhHHHHHHHHHHhCC
Q 038200 438 LLNVYAVA-GQWEDVARVRELMKKRR 462 (523)
Q Consensus 438 l~~~~~~~-g~~~~A~~~~~~m~~~~ 462 (523)
++.+|... |++++|.+.+++..+..
T Consensus 82 l~~~~~~~~~~~~~A~~~~~~~~~~~ 107 (112)
T 2kck_A 82 KADALRYIEGKEVEAEIAEARAKLEH 107 (112)
T ss_dssp HHHHHTTCSSCSHHHHHHHHHHGGGC
T ss_pred HHHHHHHHhCCHHHHHHHHHHHhhcc
Confidence 99999999 99999999999987654
No 137
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.65 E-value=6.1e-07 Score=81.59 Aligned_cols=170 Identities=12% Similarity=-0.060 Sum_probs=119.8
Q ss_pred HHHHHHhhhhhhcCChHHHHHHHHhcCC---CCh------HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcCCC-
Q 038200 255 ILDTALIDLYSKCQKVEVAQRVFDSMAD---RNL------VCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPD- 324 (523)
Q Consensus 255 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~------~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~p~- 324 (523)
..+...+..+...|++++|.+.+.+..+ ... ..+..+...+...|++++|+..+++........ ..+.
T Consensus 76 ~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~--~~~~~ 153 (293)
T 2qfc_A 76 KQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTG--IDVYQ 153 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCS--SCTTH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcC--CchHH
Confidence 3444566677788888888888775432 111 234445666778889999999999987643110 1122
Q ss_pred -HHHHHHHHHHHhhcCcHHHHHHHHHHhhHhcCCCCC-----hHHHHHHHHHHHcCCChHHHHHHHHhCCCCC---CCCC
Q 038200 325 -EITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPN-----FAHYWCMANLYAGAELTEEAEEILRKMPEDN---DNMS 395 (523)
Q Consensus 325 -~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~ 395 (523)
..+++.+...|...|++++|..+|+++.+.....|+ ..++..+...|...|++++|.+.+++..+.. ....
T Consensus 154 ~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~ 233 (293)
T 2qfc_A 154 NLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMA 233 (293)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCS
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHH
Confidence 447888889999999999999999998732111222 2588889999999999999999998876321 0011
Q ss_pred chHHHHHHHHHHHHhcCCHHHH-HHHHHHHhh
Q 038200 396 FESIMWVSLLSLCRFQGAVAMV-ERLAKSFVD 426 (523)
Q Consensus 396 ~~~~~~~~l~~~~~~~g~~~~a-~~~~~~~~~ 426 (523)
.-..++..+...+...|++++| ...++++..
T Consensus 234 ~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 234 LIGQLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp SHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 1266788888899999999999 888888775
No 138
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.65 E-value=2.2e-07 Score=79.00 Aligned_cols=132 Identities=8% Similarity=-0.017 Sum_probs=92.6
Q ss_pred HHHHHHHHHhhcCcHHHHHHHHHHhhHhcCCCC--------------ChHHHHHHHHHHHcCCChHHHHHHHHhCCCCCC
Q 038200 327 TFIGVICACVRAELLTEGRKYFRQMIDFYKIKP--------------NFAHYWCMANLYAGAELTEEAEEILRKMPEDND 392 (523)
Q Consensus 327 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 392 (523)
.+..+...+...|++++|...|++..+...-.| ....+..+..+|...|++++|+..+++..+.
T Consensus 40 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~-- 117 (198)
T 2fbn_A 40 DIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKI-- 117 (198)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--
Confidence 344444555555666666666665554211111 1267888899999999999999999998853
Q ss_pred CCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChhHHH-HHHHHHHhC
Q 038200 393 NMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVA-RVRELMKKR 461 (523)
Q Consensus 393 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~-~~~~~m~~~ 461 (523)
.+.+...+..+..++...|++++|...++++.+++|+++.++..+..++...|+.+++. ..+..|..+
T Consensus 118 -~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~~ 186 (198)
T 2fbn_A 118 -DKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLKEARKKDKLTFGGMFDK 186 (198)
T ss_dssp -STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHC------------
T ss_pred -CcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 23457788888889999999999999999999999999999999999999998888877 556666443
No 139
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.64 E-value=2.4e-06 Score=77.69 Aligned_cols=208 Identities=11% Similarity=-0.049 Sum_probs=140.5
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHcCCCCchH---HHHHHhhhhhhcCChHHHHHHHHhcCC
Q 038200 206 LFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNII---LDTALIDLYSKCQKVEVAQRVFDSMAD 282 (523)
Q Consensus 206 ~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~a~~~~~~~~~ 282 (523)
.+..+......|+..+...+...+.-.-+ .+.......+.. .+...+..+...|++++|..++++..+
T Consensus 33 ~~s~~e~g~~~~~~~~l~~i~~~l~~~~~---------~~~~~~~~~~~~~~~~l~~~i~~~~~~~~y~~a~~~~~~~l~ 103 (293)
T 3u3w_A 33 EVSRIESGAVYPSMDILQGIAAKLQIPII---------HFYEVLIYSDIERKKQFKDQVIMLCKQKRYKEIYNKVWNELK 103 (293)
T ss_dssp HHHHHHTTSCCCCHHHHHHHHHHHTCCTH---------HHHHTTTSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHCCCCCCCHHHHHHHHHHhCcCHH---------HHhCCCCCCcchhHHHHHHHHHHHHHHhhHHHHHHHHHHHhc
Confidence 34444443346777776666665543211 111111122222 223346678888999999999988654
Q ss_pred C-----C----hHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcCCC----HHHHHHHHHHHhhcCcHHHHHHHHH
Q 038200 283 R-----N----LVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPD----EITFIGVICACVRAELLTEGRKYFR 349 (523)
Q Consensus 283 ~-----~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~ 349 (523)
. + ...+..+...+...|++++|+..|++...... -.++ ..+++.+...|...|++++|..+|+
T Consensus 104 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~----~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~ 179 (293)
T 3u3w_A 104 KEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQL----TGIDVYQNLYIENAIANIYAENGYLKKGIDLFE 179 (293)
T ss_dssp TCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCC----CCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhc----ccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 1 1 11334566777788899999999999988431 1122 3368899999999999999999999
Q ss_pred HhhHhc----CCCC-ChHHHHHHHHHHHcCCChHHHHHHHHhCCCCC--CC-CCchHHHHHHHHHHHHhcCC-HHHHHHH
Q 038200 350 QMIDFY----KIKP-NFAHYWCMANLYAGAELTEEAEEILRKMPEDN--DN-MSFESIMWVSLLSLCRFQGA-VAMVERL 420 (523)
Q Consensus 350 ~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~-~~~~~~~~~~l~~~~~~~g~-~~~a~~~ 420 (523)
++.+.. +..+ ...+|..+...|.+.|++++|.+.+++..+.. .+ ...-...+..+..++...|+ +++|...
T Consensus 180 ~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~ 259 (293)
T 3u3w_A 180 QILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDA 259 (293)
T ss_dssp HHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHH
Confidence 988521 1112 23478889999999999999999998876321 11 12226778888889999994 6999999
Q ss_pred HHHHhh
Q 038200 421 AKSFVD 426 (523)
Q Consensus 421 ~~~~~~ 426 (523)
++++..
T Consensus 260 ~~~Al~ 265 (293)
T 3u3w_A 260 YKKASF 265 (293)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 999886
No 140
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.62 E-value=1.3e-07 Score=73.02 Aligned_cols=96 Identities=9% Similarity=-0.124 Sum_probs=83.0
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhhHHHHHHHH
Q 038200 363 HYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVY 442 (523)
Q Consensus 363 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 442 (523)
.+..+...+.+.|++++|...++++.+. .+.+...|..+..++...|++++|...++++++++|+++.++..++.+|
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~---~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~ 95 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQK---EPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSH 95 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 4556777888999999999999998853 2335778888888899999999999999999999999999999999999
Q ss_pred HhcCChhHHHHHHHHHHhC
Q 038200 443 AVAGQWEDVARVRELMKKR 461 (523)
Q Consensus 443 ~~~g~~~~A~~~~~~m~~~ 461 (523)
...|++++|+..+++..+.
T Consensus 96 ~~~g~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 96 TNEHNANAALASLRAWLLS 114 (121)
T ss_dssp HHHHHHHHHHHHHHHHHC-
T ss_pred HHcCCHHHHHHHHHHHHHh
Confidence 9999999999999988664
No 141
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.62 E-value=5.3e-07 Score=68.87 Aligned_cols=111 Identities=11% Similarity=-0.038 Sum_probs=65.1
Q ss_pred HHHHHHHHHHhhcCcHHHHHHHHHHhhHhcCCCCChHHHHHHHHHHHcCCChHHHHHHHHhCCCCCCCCCchHHHHHHHH
Q 038200 326 ITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLL 405 (523)
Q Consensus 326 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~ 405 (523)
..+..+...+...|++++|...|++..+. .+.+...+..+...+...|++++|...+++..+. .+.+...+..+.
T Consensus 5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~a 79 (118)
T 1elw_A 5 NELKEKGNKALSVGNIDDALQCYSEAIKL--DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDL---KPDWGKGYSRKA 79 (118)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHh---CcccHHHHHHHH
Confidence 34555555666666666666666666552 2334555666666666666666666666665532 122345555555
Q ss_pred HHHHhcCCHHHHHHHHHHHhhcCCCChhhHHHHHHH
Q 038200 406 SLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNV 441 (523)
Q Consensus 406 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 441 (523)
.++...|++++|...++++.+.+|+++..+..+..+
T Consensus 80 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 115 (118)
T 1elw_A 80 AALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNM 115 (118)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHh
Confidence 666666666666666666666666665555555443
No 142
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.61 E-value=1.6e-07 Score=78.21 Aligned_cols=128 Identities=15% Similarity=0.134 Sum_probs=95.9
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCCCcCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhHhcCCCCChHHHHHHHHH-HHcC
Q 038200 296 CIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANL-YAGA 374 (523)
Q Consensus 296 ~~~g~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~ 374 (523)
...|++++|...+++..... +.+...+..+...|...|++++|...|+++.+. .+.+...+..+..+ +...
T Consensus 21 ~~~~~~~~A~~~~~~al~~~------p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~l~~~~ 92 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRAN------PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQL--RGENAELYAALATVLYYQA 92 (177)
T ss_dssp C-----CCCCHHHHHHHHHC------CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HCSCHHHHHHHHHHHHHHT
T ss_pred hhccCHHHHHHHHHHHHHhC------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhc
Confidence 45677888888888887753 335677888888888889999999999888874 23456777778888 7788
Q ss_pred CCh--HHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhh
Q 038200 375 ELT--EEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSR 434 (523)
Q Consensus 375 g~~--~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 434 (523)
|++ ++|...++++.+. .+.+...+..+...+...|++++|...++++.+..|+++..
T Consensus 93 ~~~~~~~A~~~~~~al~~---~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 151 (177)
T 2e2e_A 93 SQHMTAQTRAMIDKALAL---DSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINR 151 (177)
T ss_dssp TTCCCHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCH
T ss_pred CCcchHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccH
Confidence 888 9999999888753 23346677778888889999999999999999999876543
No 143
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.61 E-value=3.9e-07 Score=72.08 Aligned_cols=99 Identities=7% Similarity=-0.072 Sum_probs=72.7
Q ss_pred ChHHHHHHHHHHHcCCChHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhhHHHHH
Q 038200 360 NFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLL 439 (523)
Q Consensus 360 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 439 (523)
+...+..+...+...|++++|...|++.... .+.+...+..+...+...|++++|...++++++.+|+++.++..++
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 84 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITR---NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLG 84 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhh---CcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHH
Confidence 4666677777777777777777777776643 1234566667777777778888888888888888887777888888
Q ss_pred HHHHhcCChhHHHHHHHHHHhC
Q 038200 440 NVYAVAGQWEDVARVRELMKKR 461 (523)
Q Consensus 440 ~~~~~~g~~~~A~~~~~~m~~~ 461 (523)
.+|...|++++|...+++..+.
T Consensus 85 ~~~~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 85 QCQLEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHH
Confidence 8888888888888888777654
No 144
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.60 E-value=2.6e-07 Score=75.89 Aligned_cols=106 Identities=11% Similarity=-0.061 Sum_probs=60.5
Q ss_pred HHHHHHHHHHHhhcCcHHHHHHHHHHhhHhcCCCCChHHHHHHHHHHHcCCChHHHHHHHHhCCCCCCCCCchHHHHHHH
Q 038200 325 EITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSL 404 (523)
Q Consensus 325 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l 404 (523)
...+..+...+...|++++|+..|++..+. .+.+...|..+..+|...|++++|++.+++.++. .+.+...|..+
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~l 85 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSI--APANPIYLSNRAAAYSASGQHEKAAEDAELATVV---DPKYSKAWSRL 85 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh---CCCCHHHHHHH
Confidence 345555556666666666666666666653 2234555556666666666666666666665532 12234555555
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhcCCCChhhH
Q 038200 405 LSLCRFQGAVAMVERLAKSFVDMDPQDFSRY 435 (523)
Q Consensus 405 ~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 435 (523)
..++...|++++|...++++++++|+++..+
T Consensus 86 g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 116 (164)
T 3sz7_A 86 GLARFDMADYKGAKEAYEKGIEAEGNGGSDA 116 (164)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHSSSCCHH
T ss_pred HHHHHHccCHHHHHHHHHHHHHhCCCchHHH
Confidence 5556666666666666666666666555433
No 145
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.59 E-value=4.3e-07 Score=70.69 Aligned_cols=114 Identities=11% Similarity=-0.139 Sum_probs=92.0
Q ss_pred HHHHHHHHHHHhhcCcHHHHHHHHHHhhHhcCCCCChHHHHHHHHHHHcCCChHHHHHHHHhCCCCCCCCCchHHHHHHH
Q 038200 325 EITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSL 404 (523)
Q Consensus 325 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l 404 (523)
...+..+...+.+.|++++|...|++..+. .+.+...|..+..+|.+.|++++|++.+++..+. .+.+...+..+
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~l 78 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKR--APEDARGYSNRAAALAKLMSFPEAIADCNKAIEK---DPNFVRAYIRK 78 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHh---CCCcHHHHHHH
Confidence 345667777888899999999999998874 3446788888999999999999999999998853 23346778888
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhcC------CCChhhHHHHHHHHH
Q 038200 405 LSLCRFQGAVAMVERLAKSFVDMD------PQDFSRYQFLLNVYA 443 (523)
Q Consensus 405 ~~~~~~~g~~~~a~~~~~~~~~~~------p~~~~~~~~l~~~~~ 443 (523)
..++...|++++|...++++.+++ |.++.+...+..+..
T Consensus 79 g~~~~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~~ 123 (126)
T 3upv_A 79 ATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKASQ 123 (126)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHHH
Confidence 888999999999999999999988 877777776666543
No 146
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.59 E-value=5.4e-07 Score=70.62 Aligned_cols=101 Identities=5% Similarity=-0.078 Sum_probs=90.5
Q ss_pred CCChHHHHHHHHHHHcCCChHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhhHHH
Q 038200 358 KPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQF 437 (523)
Q Consensus 358 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 437 (523)
+.+...+..+...+...|++++|.+.+++..+. .+.+...+..+...+...|++++|...++++.+..|.++.++..
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~---~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~ 89 (133)
T 2lni_A 13 PDLALMVKNKGNECFQKGDYPQAMKHYTEAIKR---NPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTR 89 (133)
T ss_dssp SCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTT---CTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc---CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHH
Confidence 345778888999999999999999999998854 23367788888889999999999999999999999999999999
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhC
Q 038200 438 LLNVYAVAGQWEDVARVRELMKKR 461 (523)
Q Consensus 438 l~~~~~~~g~~~~A~~~~~~m~~~ 461 (523)
++.+|...|++++|...+++..+.
T Consensus 90 la~~~~~~~~~~~A~~~~~~~~~~ 113 (133)
T 2lni_A 90 KAAALEAMKDYTKAMDVYQKALDL 113 (133)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHh
Confidence 999999999999999999998765
No 147
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.58 E-value=2e-06 Score=75.89 Aligned_cols=194 Identities=6% Similarity=-0.100 Sum_probs=121.2
Q ss_pred hCCCchHHHHHHHHHHHCCCCCCcccHHHH-------HHHHHccCCchHHHHHHHHHHHhCCCCC---------------
Q 038200 64 NSCVPDQGVVFYLQMIKNGFMPNSYTFVSL-------FGSCAKTGCVERGGMCHGLALKNGVDFE--------------- 121 (523)
Q Consensus 64 ~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l-------l~~~~~~~~~~~a~~~~~~~~~~~~~~~--------------- 121 (523)
..+++..|.+.|.+..+.. +-....|..+ ...+.+.++..++...+...++ +.|+
T Consensus 18 ~~~d~~~A~~~F~~a~~~d-P~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~~g~y~~~ 94 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYD-ESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAIGGLYGDI 94 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEECCTTTCCC
T ss_pred cCCCHHHHHHHHHHHHHhC-hhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhccCCccccc
Confidence 4677777777777777643 2233455544 2333333333444333333332 1111
Q ss_pred -------chHHHHHHHHHHccCChHHHHHHHhhcCC--CCcchHHHHHHHHHhcCCHHHHHHHHhcCCCC-C----hhHH
Q 038200 122 -------LPVMNSLINMYGCFGAMDCARNMFVQMSP--RDLISWNSIVSGHVRSGDMSAAHELFDIMPER-N----VVSW 187 (523)
Q Consensus 122 -------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~----~~~~ 187 (523)
......+..++...|++++|.++|+.+.. |+......+...+.+.+++++|+..|+..... + ...+
T Consensus 95 ~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~ 174 (282)
T 4f3v_A 95 TYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAGSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAG 174 (282)
T ss_dssp EEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHHH
T ss_pred ccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHHH
Confidence 12344566777788888888888888863 32225555556777888888888888766542 2 2356
Q ss_pred HHHHHHHHhcCCchHHHHHHHHHHHCCCCCC--HHHHHHHHHHHhccccHHHHHHHHHHHHHcCCCCchHHHHHHhh
Q 038200 188 NIMISGYSKSGNPGCSLKLFREMMKSGFRGN--DKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALID 262 (523)
Q Consensus 188 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 262 (523)
..+..++...|++++|+..|++.......|. .........++.+.|+.++|..+|+++..... +......|.+
T Consensus 175 ~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P--~~~~~~aL~~ 249 (282)
T 4f3v_A 175 VAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHP--EPKVAAALKD 249 (282)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSC--CHHHHHHHHC
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC--cHHHHHHHhC
Confidence 7778888888888888888888775433243 23556666778888888888888888888653 3555555443
No 148
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.57 E-value=7.9e-07 Score=75.70 Aligned_cols=158 Identities=8% Similarity=-0.097 Sum_probs=97.7
Q ss_pred hcCChHHHHHHHHHHHhCCCCCCCcCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhHhc---CCCC-ChHHHHHHHHHHH
Q 038200 297 IHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFY---KIKP-NFAHYWCMANLYA 372 (523)
Q Consensus 297 ~~g~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~---~~~~-~~~~~~~l~~~~~ 372 (523)
..|++++|.++++.+... .......+..+...+...|++++|...+++..+.. +..| ....+..+...|.
T Consensus 4 ~~g~~~~A~~~~~~~~~~------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~ 77 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAH------PATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVER 77 (203)
T ss_dssp ---CHHHHHHHHHHHHTS------TTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHhcCC------hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHH
Confidence 456677776644443331 12234566666667777777777777777665521 1111 2455666777777
Q ss_pred cCCChHHHHHHHHhCCCCC--CCCCc--hHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCC--CC----hhhHHHHHHHH
Q 038200 373 GAELTEEAEEILRKMPEDN--DNMSF--ESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDP--QD----FSRYQFLLNVY 442 (523)
Q Consensus 373 ~~g~~~~A~~~~~~~~~~~--~~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p--~~----~~~~~~l~~~~ 442 (523)
..|++++|.+.+++..+.. .+..+ ....+..+...+...|++++|...++++.+..+ .+ ..++..++.+|
T Consensus 78 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~ 157 (203)
T 3gw4_A 78 MAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLA 157 (203)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHH
Confidence 7888888777777655320 01112 234566667778888888888888888876321 12 23467888888
Q ss_pred HhcCChhHHHHHHHHHHh
Q 038200 443 AVAGQWEDVARVRELMKK 460 (523)
Q Consensus 443 ~~~g~~~~A~~~~~~m~~ 460 (523)
...|++++|...+++..+
T Consensus 158 ~~~g~~~~A~~~~~~al~ 175 (203)
T 3gw4_A 158 QQEKNLLEAQQHWLRARD 175 (203)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHCcCHHHHHHHHHHHHH
Confidence 999999999888887765
No 149
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.56 E-value=9.2e-05 Score=67.60 Aligned_cols=176 Identities=8% Similarity=0.009 Sum_probs=127.0
Q ss_pred HHHHhcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccc-cHHHHHHHHHHHHHcCCCCchHHHHHHhhhhhhc-C-
Q 038200 192 SGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSA-RFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKC-Q- 268 (523)
Q Consensus 192 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~- 268 (523)
....+.+..++|+++++.++..+ +-+...|+.--.++...| .+++++.+++.+..... -+..+|+.-..++... +
T Consensus 62 ~~~~~~e~se~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nP-Kny~aW~hR~wlL~~l~~~ 139 (349)
T 3q7a_A 62 AIAAKEEKSERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNL-KSYQVWHHRLLLLDRISPQ 139 (349)
T ss_dssp HHHHTTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHHHCCS
T ss_pred HHHHhCCCCHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHhcCC
Confidence 33445556678999999998853 234455666666666677 59999999999998753 3667777666666665 6
Q ss_pred ChHHHHHHHHhcCC---CChHHHHHHHHHHHhcCChH--------HHHHHHHHHHhCCCCCCCcCCCHHHHHHHHHHHhh
Q 038200 269 KVEVAQRVFDSMAD---RNLVCWNAMILGHCIHGKPE--------EGIKLFTALVNGTVAGGSISPDEITFIGVICACVR 337 (523)
Q Consensus 269 ~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~--------~a~~~~~~m~~~~~~~~~~~p~~~~~~~ll~~~~~ 337 (523)
++++++++++++.+ .|..+|+.-.-.+.+.|.++ ++++.++++++.. +-|...|+.....+.+
T Consensus 140 ~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d------p~N~SAW~~R~~lL~~ 213 (349)
T 3q7a_A 140 DPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD------GRNNSAWGWRWYLRVS 213 (349)
T ss_dssp CCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC------TTCHHHHHHHHHHHTT
T ss_pred ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHh
Confidence 78999999999876 35567776665555555555 8999999999864 3466777777777777
Q ss_pred cCc-------HHHHHHHHHHhhHhcCCCCChHHHHHHHHHHHcCCCh
Q 038200 338 AEL-------LTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELT 377 (523)
Q Consensus 338 ~~~-------~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 377 (523)
.+. ++++++.++++... .+-|...|+.+-..+.+.|+.
T Consensus 214 l~~~~~~~~~~~eELe~~~~aI~~--~P~n~SaW~Ylr~Ll~~~~~~ 258 (349)
T 3q7a_A 214 RPGAETSSRSLQDELIYILKSIHL--IPHNVSAWNYLRGFLKHFSLP 258 (349)
T ss_dssp STTCCCCHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCC
T ss_pred ccccccchHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcCCC
Confidence 665 68888888888873 445677887777777776654
No 150
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.56 E-value=3.1e-07 Score=73.83 Aligned_cols=106 Identities=9% Similarity=-0.056 Sum_probs=78.8
Q ss_pred CCC-HHHHHHHHHHHhhcCcHHHHHHHHHHhhHhcCCCCChHHHHHHHHHHHcCCChHHHHHHHHhCCCCCCCCCchHHH
Q 038200 322 SPD-EITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIM 400 (523)
Q Consensus 322 ~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 400 (523)
.|+ ...+..+...+.+.|++++|...|+++.+. -+.++..|..+..+|...|++++|++.|+++.+. .+.+...
T Consensus 32 ~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l---~P~~~~~ 106 (151)
T 3gyz_A 32 PDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIY--DFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFAL---GKNDYTP 106 (151)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---SSSCCHH
T ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhh---CCCCcHH
Confidence 343 346666777778888888888888888773 3445777888888888888888888888887753 1224567
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCh
Q 038200 401 WVSLLSLCRFQGAVAMVERLAKSFVDMDPQDF 432 (523)
Q Consensus 401 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~ 432 (523)
+..+..++...|++++|...|++++++.|+++
T Consensus 107 ~~~lg~~~~~lg~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 107 VFHTGQCQLRLKAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence 77777888888888888888888888888543
No 151
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.55 E-value=3.8e-07 Score=72.75 Aligned_cols=113 Identities=11% Similarity=-0.079 Sum_probs=90.6
Q ss_pred CCC-HHHHHHHHHHHhhcCcHHHHHHHHHHhhHhcCCCCChHHHHHHHHHHHcCCChHHHHHHHHhCCCCCCCCCchHHH
Q 038200 322 SPD-EITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIM 400 (523)
Q Consensus 322 ~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 400 (523)
.|+ ...+..+...+...|++++|...|+++... -+.+...|..+..+|...|++++|+..|++.... .+.+...
T Consensus 14 ~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~---~p~~~~~ 88 (142)
T 2xcb_A 14 SEDTLEQLYALGFNQYQAGKWDDAQKIFQALCML--DHYDARYFLGLGACRQSLGLYEQALQSYSYGALM---DINEPRF 88 (142)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCTHH
T ss_pred CHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc---CCCCcHH
Confidence 343 345666777888999999999999999873 3446788888999999999999999999998853 2334567
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhhHHHHH
Q 038200 401 WVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLL 439 (523)
Q Consensus 401 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 439 (523)
+..+..++...|++++|...+++++++.|+++.......
T Consensus 89 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 127 (142)
T 2xcb_A 89 PFHAAECHLQLGDLDGAESGFYSARALAAAQPAHEALAA 127 (142)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCGGGHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHH
Confidence 778888899999999999999999999998776554443
No 152
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.55 E-value=6.9e-07 Score=68.20 Aligned_cols=100 Identities=11% Similarity=0.018 Sum_probs=88.6
Q ss_pred ChHHHHHHHHHHHcCCChHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhhHHHHH
Q 038200 360 NFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLL 439 (523)
Q Consensus 360 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 439 (523)
....+..+...+...|++++|.+.+++.... .+.+...+..+...+...|++++|...++++.+..|.++..+..++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a 79 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKL---DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKA 79 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHH---CCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHH
Confidence 3567778889999999999999999998853 2335778888888999999999999999999999999999999999
Q ss_pred HHHHhcCChhHHHHHHHHHHhCC
Q 038200 440 NVYAVAGQWEDVARVRELMKKRR 462 (523)
Q Consensus 440 ~~~~~~g~~~~A~~~~~~m~~~~ 462 (523)
.+|...|++++|...+++..+.+
T Consensus 80 ~~~~~~~~~~~A~~~~~~~~~~~ 102 (118)
T 1elw_A 80 AALEFLNRFEEAKRTYEEGLKHE 102 (118)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHhhHHHHHHHHHHHHHcC
Confidence 99999999999999999987653
No 153
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.55 E-value=5.9e-07 Score=76.51 Aligned_cols=149 Identities=7% Similarity=-0.005 Sum_probs=86.7
Q ss_pred hcCCHHHHHH---HHhcCCCCChhHHHHHHHHHHhcCCchHHHHHHHHHHHC----CCC-CCHHHHHHHHHHHhccccHH
Q 038200 165 RSGDMSAAHE---LFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKS----GFR-GNDKTMASVLTACGRSARFN 236 (523)
Q Consensus 165 ~~~~~~~a~~---~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~~-p~~~~~~~ll~~~~~~~~~~ 236 (523)
..|++++|.+ .+..-+.....++..+...+...|++++|...+++..+. +.. .....+..+...+...|+++
T Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 83 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWD 83 (203)
T ss_dssp ---CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred ccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 4566666666 444433334556677777777777777777777766551 111 12345666666777777777
Q ss_pred HHHHHHHHHHHc----CCCC--chHHHHHHhhhhhhcCChHHHHHHHHhcCC-----CC----hHHHHHHHHHHHhcCCh
Q 038200 237 EGRSVHGYTVRT----SLKP--NIILDTALIDLYSKCQKVEVAQRVFDSMAD-----RN----LVCWNAMILGHCIHGKP 301 (523)
Q Consensus 237 ~a~~~~~~~~~~----~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~----~~~~~~li~~~~~~g~~ 301 (523)
+|...+++..+. +..+ ...++..+...+...|++++|...+++..+ .+ ..++..+...+...|++
T Consensus 84 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 163 (203)
T 3gw4_A 84 AARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNL 163 (203)
T ss_dssp HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCH
Confidence 777777766553 1111 234456666667777777777776665532 11 12345566666667777
Q ss_pred HHHHHHHHHHHh
Q 038200 302 EEGIKLFTALVN 313 (523)
Q Consensus 302 ~~a~~~~~~m~~ 313 (523)
++|...+++...
T Consensus 164 ~~A~~~~~~al~ 175 (203)
T 3gw4_A 164 LEAQQHWLRARD 175 (203)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 777766666544
No 154
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.55 E-value=7.1e-07 Score=80.52 Aligned_cols=190 Identities=11% Similarity=0.042 Sum_probs=112.5
Q ss_pred CHHHHHHHHHHHhccccHHHHHHHHHHHHHcCCCCchHHHHHHhhhhhhcCChHHHHHHHHhcCC---CChHHHHHHHHH
Q 038200 218 NDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMAD---RNLVCWNAMILG 294 (523)
Q Consensus 218 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~ 294 (523)
+...+..+...+...|++++|...|+++.+.. +.+...+..+..+|...|++++|+..+++..+ .+...+..+..+
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 81 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC 81 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 34455566666667777777777777766653 22566677777777777777777777777654 345677778888
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCCCcCCCH-HHHHHHHHHHhhcCcHHHHHHHHHHhhHhcCCCCChHHHHHHHHHHHc
Q 038200 295 HCIHGKPEEGIKLFTALVNGTVAGGSISPDE-ITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAG 373 (523)
Q Consensus 295 ~~~~g~~~~a~~~~~~m~~~~~~~~~~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 373 (523)
|...|++++|...|++..... |+. ..+...+....+ ...+.. +...... ....+......+...+
T Consensus 82 ~~~~g~~~~A~~~~~~al~l~-------p~~~~~~~~~~~~~~~---~~~~~~-~~~~~~~-~~~~~~~i~~~l~~l~-- 147 (281)
T 2c2l_A 82 QLEMESYDEAIANLQRAYSLA-------KEQRLNFGDDIPSALR---IAKKKR-WNSIEER-RIHQESELHSYLTRLI-- 147 (281)
T ss_dssp HHHTTCHHHHHHHHHHHHHHH-------HHTTCCCCSHHHHHHH---HHHHHH-HHHHHHT-CCCCCCHHHHHHHHHH--
T ss_pred HHHcCCHHHHHHHHHHHHHhC-------ccchhhHHHHHHHHHH---HHHHHH-HHHHHHH-HHhhhHHHHHHHHHHH--
Confidence 888888888888888877632 321 011111111111 111111 2222222 4445555554444333
Q ss_pred CCChHHHHHHHHhCCCCCCCCCch-HHHHHHHHHHHHhc-CCHHHHHHHHHHHhh
Q 038200 374 AELTEEAEEILRKMPEDNDNMSFE-SIMWVSLLSLCRFQ-GAVAMVERLAKSFVD 426 (523)
Q Consensus 374 ~g~~~~A~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~-g~~~~a~~~~~~~~~ 426 (523)
.|++++|++.+++..+ ..|+ ......+...+... +.+++|.++|+++.+
T Consensus 148 ~~~~~~A~~~~~~al~----~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~ 198 (281)
T 2c2l_A 148 AAERERELEECQRNHE----GHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDE 198 (281)
T ss_dssp HHHHHHHHTTTSGGGT----TTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHHHHHHHHhhhc----cccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 5888899988888875 3454 33333333334444 667888888888776
No 155
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.54 E-value=7.9e-07 Score=68.67 Aligned_cols=99 Identities=17% Similarity=0.183 Sum_probs=88.5
Q ss_pred hHHHHHHHHHHHcCCChHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhhHHHHHH
Q 038200 361 FAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLN 440 (523)
Q Consensus 361 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 440 (523)
...+..+...+...|++++|.+.++++... .+.+...+..+...+...|++++|..+++++.+..|.++.++..++.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~ 85 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALEL---DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGN 85 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH---CcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHH
Confidence 567888899999999999999999998853 23456788888889999999999999999999999999999999999
Q ss_pred HHHhcCChhHHHHHHHHHHhCC
Q 038200 441 VYAVAGQWEDVARVRELMKKRR 462 (523)
Q Consensus 441 ~~~~~g~~~~A~~~~~~m~~~~ 462 (523)
+|...|++++|...++++.+..
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~ 107 (125)
T 1na0_A 86 AYYKQGDYDEAIEYYQKALELD 107 (125)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHhcCHHHHHHHHHHHHHhC
Confidence 9999999999999999987753
No 156
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.54 E-value=8.5e-06 Score=74.40 Aligned_cols=218 Identities=11% Similarity=0.067 Sum_probs=158.6
Q ss_pred cccHHHHHHHHHHHHHcCCCCchHHHHHHhhhhhhcC-ChHHHHHHHHhcCC---CChHHHHHHHHHHHhc-C-ChHHHH
Q 038200 232 SARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQ-KVEVAQRVFDSMAD---RNLVCWNAMILGHCIH-G-KPEEGI 305 (523)
Q Consensus 232 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~-g-~~~~a~ 305 (523)
.+..++|+++++.++..+. -+..+|+.--.++...| .+++++++++.+.. .+..+|+.-...+... + ++++++
T Consensus 67 ~e~se~AL~lt~~~L~~nP-~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL 145 (349)
T 3q7a_A 67 EEKSERALELTEIIVRMNP-AHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEI 145 (349)
T ss_dssp TCCSHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHH
T ss_pred CCCCHHHHHHHHHHHHhCc-hhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHH
Confidence 3445689999999998753 35677777777777778 59999999999854 4667888877777776 7 899999
Q ss_pred HHHHHHHhCCCCCCCcCCCHHHHHHHHHHHhhcCcHH--------HHHHHHHHhhHhcCCCCChHHHHHHHHHHHcCCC-
Q 038200 306 KLFTALVNGTVAGGSISPDEITFIGVICACVRAELLT--------EGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAEL- 376 (523)
Q Consensus 306 ~~~~~m~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~--------~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~- 376 (523)
++++++.+.. +-|...|+.-.-.+.+.+.++ +++++++++.+. .+-|...|+....++.+.++
T Consensus 146 ~~~~k~L~~d------pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~--dp~N~SAW~~R~~lL~~l~~~ 217 (349)
T 3q7a_A 146 EYIHGSLLPD------PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRV--DGRNNSAWGWRWYLRVSRPGA 217 (349)
T ss_dssp HHHHHHTSSC------TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHTTSTTC
T ss_pred HHHHHHHHhC------CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcccc
Confidence 9999999854 345666666555555555555 899999999884 44577888888888888876
Q ss_pred ------hHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHhcCCH--------------------HHHHHHHHHHhhcC--
Q 038200 377 ------TEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAV--------------------AMVERLAKSFVDMD-- 428 (523)
Q Consensus 377 ------~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~--------------------~~a~~~~~~~~~~~-- 428 (523)
++++++.+++++.. .+-|...|+.+...+...|.. .........+....
T Consensus 218 ~~~~~~~~eELe~~~~aI~~---~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (349)
T 3q7a_A 218 ETSSRSLQDELIYILKSIHL---IPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLP 294 (349)
T ss_dssp CCCHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCC
T ss_pred ccchHHHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccc
Confidence 68999999888853 344677777777666666543 33333333333322
Q ss_pred ----CCChhhHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 038200 429 ----PQDFSRYQFLLNVYAVAGQWEDVARVRELMKKR 461 (523)
Q Consensus 429 ----p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 461 (523)
+.++.++..|+.+|...|+.++|.++++.+.++
T Consensus 295 ~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~ 331 (349)
T 3q7a_A 295 EDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSE 331 (349)
T ss_dssp SSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred cccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Confidence 457778999999999999999999999998653
No 157
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.54 E-value=8e-07 Score=72.87 Aligned_cols=99 Identities=9% Similarity=-0.054 Sum_probs=66.2
Q ss_pred ChHHHHHHHHHHHcCCChHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhhHHHHH
Q 038200 360 NFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLL 439 (523)
Q Consensus 360 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 439 (523)
+...+..+...+.+.|++++|++.|++..+. .+.+...+..+..++...|++++|...++++++++|+++.+|..++
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg 86 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSI---APANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLG 86 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 3455666666677777777777777776642 1224556666666677777777777777777777777777777777
Q ss_pred HHHHhcCChhHHHHHHHHHHhC
Q 038200 440 NVYAVAGQWEDVARVRELMKKR 461 (523)
Q Consensus 440 ~~~~~~g~~~~A~~~~~~m~~~ 461 (523)
.+|...|++++|...|++..+.
T Consensus 87 ~~~~~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 87 LARFDMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHHHHh
Confidence 7777777777777777766554
No 158
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.53 E-value=1.7e-06 Score=70.86 Aligned_cols=130 Identities=11% Similarity=-0.058 Sum_probs=99.2
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhHhcCCCCChHHHH
Q 038200 286 VCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYW 365 (523)
Q Consensus 286 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 365 (523)
..+..+...+...|++++|...|++..... +.+...+..+...+...|++++|...+++..+. .+.+...+.
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~ 85 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELN------PSNAIYYGNRSLAYLRTECYGYALGDATRAIEL--DKKYIKGYY 85 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhC------CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcccHHHHH
Confidence 456777788888999999999999888853 335677888888888999999999999998874 344677888
Q ss_pred HHHHHHHcCCChHHHHHHHHhCCCCCCCCCchHHHH--HHHHHHHHhcCCHHHHHHHHHHHhh
Q 038200 366 CMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMW--VSLLSLCRFQGAVAMVERLAKSFVD 426 (523)
Q Consensus 366 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~g~~~~a~~~~~~~~~ 426 (523)
.+..++...|++++|.+.++++.+.. +.+...+ ......+...|++++|...++...+
T Consensus 86 ~~a~~~~~~~~~~~A~~~~~~a~~~~---p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 86 RRAASNMALGKFRAALRDYETVVKVK---PHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHS---TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 88899999999999999998887531 2233333 3334446777888888888887654
No 159
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.51 E-value=3.2e-05 Score=70.27 Aligned_cols=232 Identities=10% Similarity=0.076 Sum_probs=154.1
Q ss_pred HhcCCch-HHHHHHHHHHHCCCCCCH-HHHHHHHHHHhcccc----------HHHHHHHHHHHHHcCCCCchHHHHHHhh
Q 038200 195 SKSGNPG-CSLKLFREMMKSGFRGND-KTMASVLTACGRSAR----------FNEGRSVHGYTVRTSLKPNIILDTALID 262 (523)
Q Consensus 195 ~~~~~~~-~a~~~~~~m~~~~~~p~~-~~~~~ll~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 262 (523)
.+.|.++ +|+.++..+... .|+. ..|+.--.++...+. ++++..+++.+..... -+..+|+.-.-
T Consensus 40 ~~~~e~s~eaL~~t~~~L~~--nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~P-Kny~aW~hR~w 116 (331)
T 3dss_A 40 RQAGELDESVLELTSQILGA--NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNP-KSYGTWHHRCW 116 (331)
T ss_dssp HHTTCCSHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred HHcCCCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCC-CCHHHHHHHHH
Confidence 4555554 788888888875 3443 334433333333332 6788888888888653 36777776666
Q ss_pred hhhhcC--ChHHHHHHHHhcCC---CChHHHHHHHHHHHhcCC-hHHHHHHHHHHHhCCCCCCCcCCCHHHHHHHHHHHh
Q 038200 263 LYSKCQ--KVEVAQRVFDSMAD---RNLVCWNAMILGHCIHGK-PEEGIKLFTALVNGTVAGGSISPDEITFIGVICACV 336 (523)
Q Consensus 263 ~~~~~~--~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~-~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~ll~~~~ 336 (523)
++...+ .+++++.+++++.+ .|..+|+.-.-.+...|. ++++++.+.+++... +-|...|+.....+.
T Consensus 117 lL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~------p~N~SAW~~R~~ll~ 190 (331)
T 3dss_A 117 LLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN------FSNYSSWHYRSCLLP 190 (331)
T ss_dssp HHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC------SCCHHHHHHHHHHHH
T ss_pred HHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHC------CCCHHHHHHHHHHHH
Confidence 666666 47899999988854 567788887777778888 589999999999864 335566665555544
Q ss_pred hc--------------CcHHHHHHHHHHhhHhcCCCCChHHHHHHHHHHHcC-----------CChHHHHHHHHhCCCCC
Q 038200 337 RA--------------ELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGA-----------ELTEEAEEILRKMPEDN 391 (523)
Q Consensus 337 ~~--------------~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----------g~~~~A~~~~~~~~~~~ 391 (523)
.. +.++++++.+...... .+-|...|+.+-..+.+. +.++++++.++++.+
T Consensus 191 ~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~--~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle-- 266 (331)
T 3dss_A 191 QLHPQPDSGPQGRLPENVLLKELELVQNAFFT--DPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQE-- 266 (331)
T ss_dssp HHSCCC------CCCHHHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHH--
T ss_pred HhhhccccccccccchHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHh--
Confidence 43 4578889999988873 455677777666666655 456788888888775
Q ss_pred CCCCchHHHHHHHHH-----HHHhcCCHHHHHHHHHHHhhcCCCChhhHHHHHHHH
Q 038200 392 DNMSFESIMWVSLLS-----LCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVY 442 (523)
Q Consensus 392 ~~~~~~~~~~~~l~~-----~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 442 (523)
..||. .|..+.. +....|..++....+.++.+++|....-|..+...+
T Consensus 267 --~~pd~-~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r~~~y~d~~~~~ 319 (331)
T 3dss_A 267 --LEPEN-KWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKF 319 (331)
T ss_dssp --HCTTC-HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGGHHHHHHHHHHH
T ss_pred --hCccc-chHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcchhhHHHHHHHHH
Confidence 35553 2222111 112356677888888888888887666666655444
No 160
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.51 E-value=3.8e-07 Score=71.11 Aligned_cols=95 Identities=8% Similarity=-0.104 Sum_probs=55.9
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCh-------hhH
Q 038200 363 HYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDF-------SRY 435 (523)
Q Consensus 363 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~-------~~~ 435 (523)
.+..+...+.+.|++++|++.|++.++. .+.+...|..+..+|...|++++|...++++++++|++. .+|
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~---~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~ 86 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIEL---DPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAM 86 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHH
Confidence 4445566666666666666666665542 122345555566666666666666666666666555432 245
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHh
Q 038200 436 QFLLNVYAVAGQWEDVARVRELMKK 460 (523)
Q Consensus 436 ~~l~~~~~~~g~~~~A~~~~~~m~~ 460 (523)
..++.+|...|++++|++.|++...
T Consensus 87 ~~lg~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 87 SRAGNAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 5566666666666666666666544
No 161
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.49 E-value=1.8e-06 Score=69.10 Aligned_cols=96 Identities=7% Similarity=-0.092 Sum_probs=49.4
Q ss_pred hHHHHHHHHHHHcCCChHHHHHHHHhCCCCCCCCCch----HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhhHH
Q 038200 361 FAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFE----SIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQ 436 (523)
Q Consensus 361 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 436 (523)
...+..+...+...|++++|.+.|++..+ ..|+ ...+..+...+...|++++|...++++.+..|+++..+.
T Consensus 28 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~----~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 103 (148)
T 2dba_A 28 VEQLRKEGNELFKCGDYGGALAAYTQALG----LDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALY 103 (148)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHT----SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHH----HcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHH
Confidence 34444445555555555555555555443 1222 344444444555555555555555555555555555555
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHh
Q 038200 437 FLLNVYAVAGQWEDVARVRELMKK 460 (523)
Q Consensus 437 ~l~~~~~~~g~~~~A~~~~~~m~~ 460 (523)
.++.+|...|++++|...+++..+
T Consensus 104 ~~a~~~~~~~~~~~A~~~~~~al~ 127 (148)
T 2dba_A 104 RRSQALEKLGRLDQAVLDLQRCVS 127 (148)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHH
Confidence 555555555555555555555543
No 162
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.48 E-value=2e-06 Score=68.82 Aligned_cols=115 Identities=10% Similarity=-0.073 Sum_probs=93.6
Q ss_pred CHHHHHHHHHHHhhcCcHHHHHHHHHHhhHhcCCCCC----hHHHHHHHHHHHcCCChHHHHHHHHhCCCCCCCCCchHH
Q 038200 324 DEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPN----FAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESI 399 (523)
Q Consensus 324 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 399 (523)
+...+..+...+...|++++|...|++..+ ..|+ ...+..+...|...|++++|.+.+++..+. .+.+..
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~---~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---~~~~~~ 100 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALG---LDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEK---DGGDVK 100 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHT---SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---TSCCHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHH---HcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhh---CccCHH
Confidence 456777888888889999999999998876 3454 677888888999999999999999988753 233567
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhhHHHHHHHHHh
Q 038200 400 MWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAV 444 (523)
Q Consensus 400 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 444 (523)
.+..+..++...|++++|...++++.+.+|+++.++..+..+..+
T Consensus 101 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 145 (148)
T 2dba_A 101 ALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNISGP 145 (148)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHhh
Confidence 778888889999999999999999999999888877777666543
No 163
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.47 E-value=1e-06 Score=69.59 Aligned_cols=116 Identities=11% Similarity=-0.137 Sum_probs=93.0
Q ss_pred CCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhHhcCCCCChHHHHHHHHHHHcCCChHHHHHHHHhCCCCCCCCCchHHHH
Q 038200 322 SPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMW 401 (523)
Q Consensus 322 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 401 (523)
+.+...+..+...+...|++++|...|++..+. .+.+...+..+..++...|++++|...+++..+. .+.+...+
T Consensus 6 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~ 80 (137)
T 3q49_B 6 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRALEL---DGQSVKAH 80 (137)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHH
T ss_pred cccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhh--CcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh---CchhHHHH
Confidence 345778888888999999999999999998874 3446788889999999999999999999998853 23356778
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhcCCC-----ChhhHHHHHHHH
Q 038200 402 VSLLSLCRFQGAVAMVERLAKSFVDMDPQ-----DFSRYQFLLNVY 442 (523)
Q Consensus 402 ~~l~~~~~~~g~~~~a~~~~~~~~~~~p~-----~~~~~~~l~~~~ 442 (523)
..+..++...|++++|...++++.++.|+ +..+...+..+.
T Consensus 81 ~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~l~~~~ 126 (137)
T 3q49_B 81 FFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAK 126 (137)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHChhHHHHHHHHHHHHHHHHH
Confidence 88888899999999999999999998876 444555554443
No 164
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.46 E-value=1.4e-06 Score=67.95 Aligned_cols=99 Identities=11% Similarity=-0.034 Sum_probs=88.7
Q ss_pred ChHHHHHHHHHHHcCCChHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhhHHHHH
Q 038200 360 NFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLL 439 (523)
Q Consensus 360 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 439 (523)
+...+..+...+...|++++|.+.++++... .+.+...+..+...+...|++++|...++++.+..|+++.++..++
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ 87 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIEL---NPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMG 87 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHc---CCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHH
Confidence 4667888899999999999999999998753 2335778888888999999999999999999999999999999999
Q ss_pred HHHHhcCChhHHHHHHHHHHhC
Q 038200 440 NVYAVAGQWEDVARVRELMKKR 461 (523)
Q Consensus 440 ~~~~~~g~~~~A~~~~~~m~~~ 461 (523)
.+|...|++++|...+++..+.
T Consensus 88 ~~~~~~~~~~~A~~~~~~~~~~ 109 (131)
T 2vyi_A 88 LALSSLNKHVEAVAYYKKALEL 109 (131)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHhc
Confidence 9999999999999999998775
No 165
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.42 E-value=2.6e-06 Score=66.28 Aligned_cols=109 Identities=11% Similarity=0.018 Sum_probs=74.6
Q ss_pred HHHHHHHHHHhhcCcHHHHHHHHHHhhHhcCCCCChHHHHHHHHHHHcCCChHHHHHHHHhCCCCCCCCCch----HHHH
Q 038200 326 ITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFE----SIMW 401 (523)
Q Consensus 326 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~----~~~~ 401 (523)
..+..+...+.+.|++++|+..|++..+. .+.+...|..+..+|...|++++|++.+++.++......++ ..++
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~--~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~ 86 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIEL--DPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAM 86 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHH
Confidence 35666777777788888888888877763 23356777777888888888888888877766321111111 2356
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhhHHH
Q 038200 402 VSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQF 437 (523)
Q Consensus 402 ~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 437 (523)
..+..++...|++++|.+.++++++..| ++.....
T Consensus 87 ~~lg~~~~~~~~~~~A~~~~~kal~~~~-~~~~~~~ 121 (127)
T 4gcn_A 87 SRAGNAFQKQNDLSLAVQWFHRSLSEFR-DPELVKK 121 (127)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSC-CHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCc-CHHHHHH
Confidence 6677778888888889888888888777 4544443
No 166
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.42 E-value=1.7e-06 Score=67.38 Aligned_cols=95 Identities=11% Similarity=-0.037 Sum_probs=49.4
Q ss_pred HHHHHHcCCChHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCC---hhhHHHHHHHHH
Q 038200 367 MANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQD---FSRYQFLLNVYA 443 (523)
Q Consensus 367 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~~ 443 (523)
+...+...|++++|.+.|+++.+...+.......+..+..++...|++++|...++++.+..|++ +.++..++.+|.
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~ 87 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQY 87 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHH
Confidence 34445555555555555555543211111111344444555555566666666666666655555 445555666666
Q ss_pred hcCChhHHHHHHHHHHhC
Q 038200 444 VAGQWEDVARVRELMKKR 461 (523)
Q Consensus 444 ~~g~~~~A~~~~~~m~~~ 461 (523)
..|++++|...++++.+.
T Consensus 88 ~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 88 GEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHH
Confidence 666666666666655443
No 167
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.42 E-value=1.9e-06 Score=83.61 Aligned_cols=98 Identities=13% Similarity=-0.000 Sum_probs=78.8
Q ss_pred hHHHHHHHHHHHcCCChHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhhHHHHHH
Q 038200 361 FAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLN 440 (523)
Q Consensus 361 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 440 (523)
...|..+..+|.+.|++++|+..++++++. .+.+...+..+..++...|++++|...|+++++++|++..++..+..
T Consensus 317 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~---~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~ 393 (457)
T 1kt0_A 317 LAAFLNLAMCYLKLREYTKAVECCDKALGL---DSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISM 393 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhc---CCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 467888999999999999999999998864 23357788888899999999999999999999999999999999999
Q ss_pred HHHhcCChhHHHH-HHHHHHhC
Q 038200 441 VYAVAGQWEDVAR-VRELMKKR 461 (523)
Q Consensus 441 ~~~~~g~~~~A~~-~~~~m~~~ 461 (523)
++.+.|+++++.+ .++.|..+
T Consensus 394 ~~~~~~~~~~a~~~~~~~~f~k 415 (457)
T 1kt0_A 394 CQKKAKEHNERDRRIYANMFKK 415 (457)
T ss_dssp HHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999988764 45655443
No 168
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.41 E-value=1.2e-06 Score=69.71 Aligned_cols=64 Identities=5% Similarity=-0.124 Sum_probs=56.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhc-------CCCChhhH----HHHHHHHHhcCChhHHHHHHHHHHhC
Q 038200 398 SIMWVSLLSLCRFQGAVAMVERLAKSFVDM-------DPQDFSRY----QFLLNVYAVAGQWEDVARVRELMKKR 461 (523)
Q Consensus 398 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-------~p~~~~~~----~~l~~~~~~~g~~~~A~~~~~~m~~~ 461 (523)
...|..+..++...|++++|+..+++++++ +|++...| ...+.++...|++++|+..|++..+.
T Consensus 57 a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel 131 (159)
T 2hr2_A 57 AFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM 131 (159)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 447888888888899999999999999988 99998899 99999999999999999999988664
No 169
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.40 E-value=4.3e-07 Score=69.68 Aligned_cols=88 Identities=16% Similarity=0.031 Sum_probs=60.8
Q ss_pred CCChHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChhHHHH
Q 038200 374 AELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVAR 453 (523)
Q Consensus 374 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 453 (523)
.|++++|+..|++..+.+...+.+...+..+...+...|++++|...++++++.+|+++.++..++.+|...|++++|+.
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 82 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVE 82 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHH
Confidence 56777777777777742110122355666777777888888888888888888888888888888888888888888888
Q ss_pred HHHHHHhC
Q 038200 454 VRELMKKR 461 (523)
Q Consensus 454 ~~~~m~~~ 461 (523)
.+++..+.
T Consensus 83 ~~~~al~~ 90 (117)
T 3k9i_A 83 LLLKIIAE 90 (117)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 88777654
No 170
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.39 E-value=7e-07 Score=87.06 Aligned_cols=121 Identities=14% Similarity=-0.004 Sum_probs=99.0
Q ss_pred HHHHHhhcCcHHHHHHHHHHhhHhcCCCCChHHHHHHHHHHHcCCChHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHh
Q 038200 331 VICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRF 410 (523)
Q Consensus 331 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 410 (523)
+...+.+.|++++|.+.|+++.+. .+.+...|..+..+|.+.|++++|++.+++..+. .+.+...+..+..++..
T Consensus 12 lg~~~~~~g~~~~A~~~~~~Al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l---~p~~~~~~~~lg~~~~~ 86 (477)
T 1wao_1 12 QANDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIEL---DKKYIKGYYRRAASNMA 86 (477)
T ss_dssp SSSSTTTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS---CTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHH
Confidence 334566789999999999999884 3445888999999999999999999999998864 23357788888889999
Q ss_pred cCCHHHHHHHHHHHhhcCCCChhhHHHHHHH--HHhcCChhHHHHHHH
Q 038200 411 QGAVAMVERLAKSFVDMDPQDFSRYQFLLNV--YAVAGQWEDVARVRE 456 (523)
Q Consensus 411 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~--~~~~g~~~~A~~~~~ 456 (523)
.|++++|...++++.+.+|+++.++..++.+ +.+.|++++|++.++
T Consensus 87 ~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 87 LGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HTCHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 9999999999999999999988888888888 888999999999988
No 171
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.38 E-value=1.5e-06 Score=67.78 Aligned_cols=116 Identities=6% Similarity=-0.072 Sum_probs=78.4
Q ss_pred HHHHHHHHHHhhcCcHHHHHHHHHHhhHhcCCCCChHHHHHHHHHHHcCCChHHHHHHHHhCCCCCCCCCch----HHHH
Q 038200 326 ITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFE----SIMW 401 (523)
Q Consensus 326 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~----~~~~ 401 (523)
..+..+...+...|++++|...|++..+. .+.+...+..+...|...|++++|...++++........++ ...+
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKEL--DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAY 82 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHH
Confidence 45566667777777888888877777763 33456677777777777888888888777766421101111 5566
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhhHHHHHHHHHh
Q 038200 402 VSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAV 444 (523)
Q Consensus 402 ~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 444 (523)
..+...+...|++++|...++++.+..| ++.....+..+...
T Consensus 83 ~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~ 124 (131)
T 1elr_A 83 ARIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEKI 124 (131)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHH
Confidence 7777778888888888888888888777 56666666555443
No 172
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.38 E-value=2.9e-06 Score=78.68 Aligned_cols=147 Identities=7% Similarity=-0.015 Sum_probs=116.4
Q ss_pred CChHHHHHHHHhcCC---CChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcCCC----------------HHHH
Q 038200 268 QKVEVAQRVFDSMAD---RNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPD----------------EITF 328 (523)
Q Consensus 268 ~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~p~----------------~~~~ 328 (523)
+++++|...|+...+ .+...+..+...|...|++++|+..|++.+... |+ ...+
T Consensus 127 ~~~~~A~~~~~~a~~~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~-------p~~~~~~~~~~~~~~~~~~~~~ 199 (336)
T 1p5q_A 127 KSFEKAKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWL-------EYESSFSNEEAQKAQALRLASH 199 (336)
T ss_dssp EEEECCCCGGGCCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-------TTCCCCCSHHHHHHHHHHHHHH
T ss_pred eecccccchhcCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHh-------hccccCChHHHHHHHHHHHHHH
Confidence 445555555554432 245678888999999999999999999999853 54 3788
Q ss_pred HHHHHHHhhcCcHHHHHHHHHHhhHhcCCCCChHHHHHHHHHHHcCCChHHHHHHHHhCCCCCCCCCchHHHHHHHHHHH
Q 038200 329 IGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLC 408 (523)
Q Consensus 329 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 408 (523)
..+..++.+.|++++|+..++++.+. .+.+...|..+..+|...|++++|.+.|+++.+. .+.+...+..+...+
T Consensus 200 ~nla~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l---~P~~~~a~~~l~~~~ 274 (336)
T 1p5q_A 200 LNLAMCHLKLQAFSAAIESCNKALEL--DSNNEKGLSRRGEAHLAVNDFELARADFQKVLQL---YPNNKAAKTQLAVCQ 274 (336)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH---CCCCHHHHHHHHHHH
Confidence 99999999999999999999999984 3457889999999999999999999999999863 233566777888888
Q ss_pred HhcCCHHHH-HHHHHHHhh
Q 038200 409 RFQGAVAMV-ERLAKSFVD 426 (523)
Q Consensus 409 ~~~g~~~~a-~~~~~~~~~ 426 (523)
...|+.++| ...++.+.+
T Consensus 275 ~~~~~~~~a~~~~~~~~~~ 293 (336)
T 1p5q_A 275 QRIRRQLAREKKLYANMFE 293 (336)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 889998888 446666553
No 173
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.36 E-value=2.2e-06 Score=83.48 Aligned_cols=121 Identities=7% Similarity=-0.049 Sum_probs=85.0
Q ss_pred HHHHhhhhhhcCChHHHHHHHHhcCC---CChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcCCCHHHHHHHHH
Q 038200 257 DTALIDLYSKCQKVEVAQRVFDSMAD---RNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVIC 333 (523)
Q Consensus 257 ~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~ll~ 333 (523)
+..+...+.+.|++++|++.|++..+ .+...|..+..+|...|++++|+..+++..+.. +.+...+..+..
T Consensus 9 ~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~------p~~~~~~~~lg~ 82 (477)
T 1wao_1 9 LKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD------KKYIKGYYRRAA 82 (477)
T ss_dssp SSSSSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC------TTCHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC------CCCHHHHHHHHH
Confidence 44456677788888888888887643 456788888888888888888888888888853 234667778888
Q ss_pred HHhhcCcHHHHHHHHHHhhHhcCCCCChHHHHHHHHH--HHcCCChHHHHHHHH
Q 038200 334 ACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANL--YAGAELTEEAEEILR 385 (523)
Q Consensus 334 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~A~~~~~ 385 (523)
+|...|++++|.+.|+++.+. .+.+...+..+..+ +.+.|++++|++.++
T Consensus 83 ~~~~~g~~~eA~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 83 SNMALGKFRAALRDYETVVKV--KPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHTCHHHHHHHHHHHHHH--STTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 888888888888888888774 22234455555555 777788888888887
No 174
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.35 E-value=8.4e-06 Score=63.39 Aligned_cols=111 Identities=8% Similarity=0.032 Sum_probs=83.3
Q ss_pred HHHHHHHhhcCcHHHHHHHHHHhhHhcCCCCCh---HHHHHHHHHHHcCCChHHHHHHHHhCCCCCCCCCchHHHHHHHH
Q 038200 329 IGVICACVRAELLTEGRKYFRQMIDFYKIKPNF---AHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLL 405 (523)
Q Consensus 329 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~ 405 (523)
..+...+...|++++|...|+.+.+. .+.+. ..+..+..++...|++++|...++++.............+..+.
T Consensus 6 ~~~a~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la 83 (129)
T 2xev_A 6 YNVAFDALKNGKYDDASQLFLSFLEL--YPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLG 83 (129)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--CSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHH--CCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHH
Confidence 34556777889999999999998874 22233 57778888999999999999999988753211111156677778
Q ss_pred HHHHhcCCHHHHHHHHHHHhhcCCCChhhHHHHHHH
Q 038200 406 SLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNV 441 (523)
Q Consensus 406 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 441 (523)
.++...|++++|...++++.+..|+++........+
T Consensus 84 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~l 119 (129)
T 2xev_A 84 LSQYGEGKNTEAQQTLQQVATQYPGSDAARVAQERL 119 (129)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTSHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCCCChHHHHHHHHH
Confidence 889999999999999999999999877655544433
No 175
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.35 E-value=2.2e-06 Score=64.64 Aligned_cols=103 Identities=13% Similarity=0.015 Sum_probs=81.4
Q ss_pred HHHHHHHHHHHhhcCcHHHHHHHHHHhhHhcCCCCChHHHHHHHHHHHcCCChHHHHHHHHhCCCCCCCCCc--hHHHHH
Q 038200 325 EITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSF--ESIMWV 402 (523)
Q Consensus 325 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~~ 402 (523)
...+..+...+...|++++|...++++.+. .+.+...+..+...+...|++++|.+.+++..+. .+. +...+.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~---~~~~~~~~~~~ 80 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQL--DPEESKYWLMKGKALYNLERYEEAVDCYNYVINV---IEDEYNKDVWA 80 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---SCCTTCHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh---CcccchHHHHH
Confidence 445666777788888999999999888874 3446777888888888999999999999888753 223 467778
Q ss_pred HHHHHHHhc-CCHHHHHHHHHHHhhcCCCCh
Q 038200 403 SLLSLCRFQ-GAVAMVERLAKSFVDMDPQDF 432 (523)
Q Consensus 403 ~l~~~~~~~-g~~~~a~~~~~~~~~~~p~~~ 432 (523)
.+...+... |++++|.+.++++.+..|+++
T Consensus 81 ~l~~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 111 (112)
T 2kck_A 81 AKADALRYIEGKEVEAEIAEARAKLEHHHHH 111 (112)
T ss_dssp HHHHHHTTCSSCSHHHHHHHHHHGGGCCCCC
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHhhcccCCC
Confidence 888888889 999999999999998888653
No 176
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.34 E-value=6.5e-07 Score=76.09 Aligned_cols=150 Identities=11% Similarity=0.044 Sum_probs=88.0
Q ss_pred ChhHHHHHHHHhhccCCchhHHHHhccCCC---CCcccHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCc---------
Q 038200 20 NSFWTINLLKHSADFGSPDYTVLVFKCINN---PGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNS--------- 87 (523)
Q Consensus 20 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~--------- 87 (523)
.+...+.........|+++.+.+.|+.... .....+..+...+.+.|++++|+..|++..+.. +.+.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~ 81 (198)
T 2fbn_A 3 SSHHHHHHSSGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFF-IHTEEWDDQILLD 81 (198)
T ss_dssp -------------------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-TTCTTCCCHHHHH
T ss_pred CcccccchhhhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-hcccccchhhHHH
Confidence 344556666677778889999988875432 244567788889999999999999999998753 1122
Q ss_pred -------ccHHHHHHHHHccCCchHHHHHHHHHHHhCCCCCchHHHHHHHHHHccCChHHHHHHHhhcC---CCCcchHH
Q 038200 88 -------YTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMS---PRDLISWN 157 (523)
Q Consensus 88 -------~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~ 157 (523)
..+..+..++...|++++|...++..++..+. +...+..+..+|...|++++|.+.|++.. +.+...+.
T Consensus 82 ~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 160 (198)
T 2fbn_A 82 KKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKN-NVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRN 160 (198)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHH
Confidence 56666777777778888888888877776433 56667777777777777777777776653 22334444
Q ss_pred HHHHHHHhcCCHHH
Q 038200 158 SIVSGHVRSGDMSA 171 (523)
Q Consensus 158 ~ll~~~~~~~~~~~ 171 (523)
.+...+...++.++
T Consensus 161 ~l~~~~~~~~~~~~ 174 (198)
T 2fbn_A 161 SYELCVNKLKEARK 174 (198)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHH
Confidence 44444444443333
No 177
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.33 E-value=2e-06 Score=67.01 Aligned_cols=99 Identities=10% Similarity=-0.000 Sum_probs=86.6
Q ss_pred hHHHHHHHHHHHcCCChHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCC-------hh
Q 038200 361 FAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQD-------FS 433 (523)
Q Consensus 361 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~-------~~ 433 (523)
...+..+...+...|++++|...+++.... .+.+...+..+...+...|++++|...++++.+..|.+ +.
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~---~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 80 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKEL---DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAK 80 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhc---CCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHH
Confidence 456778889999999999999999998853 23457778888889999999999999999999987765 78
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 038200 434 RYQFLLNVYAVAGQWEDVARVRELMKKRR 462 (523)
Q Consensus 434 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 462 (523)
++..++.+|...|++++|.+.+++..+..
T Consensus 81 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 109 (131)
T 1elr_A 81 AYARIGNSYFKEEKYKDAIHFYNKSLAEH 109 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 89999999999999999999999997753
No 178
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.32 E-value=1.3e-05 Score=77.24 Aligned_cols=194 Identities=7% Similarity=-0.040 Sum_probs=112.3
Q ss_pred HHHhcCCchHHHHHHHHHHHCCCCCC----------------HHHHHHHHHHHhccccHHHHHHHHHHHHHcCCC-Cc--
Q 038200 193 GYSKSGNPGCSLKLFREMMKSGFRGN----------------DKTMASVLTACGRSARFNEGRSVHGYTVRTSLK-PN-- 253 (523)
Q Consensus 193 ~~~~~~~~~~a~~~~~~m~~~~~~p~----------------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~-- 253 (523)
.+.+.|++++|++.|..+.+...... ...+..+...|...|++++|.+.+..+.+.-.. ++
T Consensus 13 ~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~ 92 (434)
T 4b4t_Q 13 RLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSK 92 (434)
T ss_dssp HHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHH
T ss_pred HHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchH
Confidence 44556666666666666655321110 013555666667777777777666665542111 11
Q ss_pred --hHHHHHHhhhhhhcCChHHHHHHHHhcCC--------C-ChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcC
Q 038200 254 --IILDTALIDLYSKCQKVEVAQRVFDSMAD--------R-NLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSIS 322 (523)
Q Consensus 254 --~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--------~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~ 322 (523)
..+.+.+...+...|+++.|..++..... . -..++..+...|...|++++|..+++++...-.... -.
T Consensus 93 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~-~~ 171 (434)
T 4b4t_Q 93 TVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLD-DK 171 (434)
T ss_dssp HHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSS-CS
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcc-cc
Confidence 12233344444556677777776665422 1 134667777888888888888888877655321000 11
Q ss_pred CC-HHHHHHHHHHHhhcCcHHHHHHHHHHhhHhcC-CC-C-C--hHHHHHHHHHHHcCCChHHHHHHHHhC
Q 038200 323 PD-EITFIGVICACVRAELLTEGRKYFRQMIDFYK-IK-P-N--FAHYWCMANLYAGAELTEEAEEILRKM 387 (523)
Q Consensus 323 p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~-~-~--~~~~~~l~~~~~~~g~~~~A~~~~~~~ 387 (523)
+. ..++..++..|...|++++|..++++...... +. | . ...+..+...+...|++++|...|.+.
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a 242 (434)
T 4b4t_Q 172 PSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFES 242 (434)
T ss_dssp THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 22 34677777888888888888888887654311 11 1 1 245566667777788888887766555
No 179
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.31 E-value=6.9e-06 Score=79.21 Aligned_cols=200 Identities=7% Similarity=-0.077 Sum_probs=142.2
Q ss_pred HHHHhccccHHHHHHHHHHHHHcCCCCc----------------hHHHHHHhhhhhhcCChHHHHHHHHhcCC-----CC
Q 038200 226 LTACGRSARFNEGRSVHGYTVRTSLKPN----------------IILDTALIDLYSKCQKVEVAQRVFDSMAD-----RN 284 (523)
Q Consensus 226 l~~~~~~~~~~~a~~~~~~~~~~~~~~~----------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~ 284 (523)
...+.+.|++++|.+.|..+.+...... ...+..++..|...|++++|.+++..+.+ ++
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~ 90 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK 90 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence 4456788999999999999988643221 12467789999999999999999988754 11
Q ss_pred h----HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcCC-CHHHHHHHHHHHhhcCcHHHHHHHHHHhhHhcCCCC
Q 038200 285 L----VCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISP-DEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKP 359 (523)
Q Consensus 285 ~----~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 359 (523)
. ...+.+...+...|+++.|..++++......... ..+ ...++..+...+...|++++|..+++.+.....-..
T Consensus 91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~ 169 (434)
T 4b4t_Q 91 SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREK-RVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLD 169 (434)
T ss_dssp HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSS-CCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSS
T ss_pred hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcc
Confidence 1 2334444455667899999999888764210000 222 356788889999999999999999998876422111
Q ss_pred ----ChHHHHHHHHHHHcCCChHHHHHHHHhCCCCCC--CCCch--HHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 038200 360 ----NFAHYWCMANLYAGAELTEEAEEILRKMPEDND--NMSFE--SIMWVSLLSLCRFQGAVAMVERLAKSFVD 426 (523)
Q Consensus 360 ----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 426 (523)
....+..++..|...|++++|..++++...... ..++. ...+..+...+...|++++|...+..+.+
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 170 DKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp CSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 256788899999999999999999987653211 11222 34555666677888999999998888765
No 180
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.31 E-value=4.2e-06 Score=67.91 Aligned_cols=135 Identities=13% Similarity=-0.034 Sum_probs=94.8
Q ss_pred HHHHHHHHHHhhcCcHHHHHHHHHHhhHhcCCCCC----hHHHHHHHHHHHcCCChHHHHHHHHhCCCCCC--CCCc-hH
Q 038200 326 ITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPN----FAHYWCMANLYAGAELTEEAEEILRKMPEDND--NMSF-ES 398 (523)
Q Consensus 326 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~-~~ 398 (523)
.++..+...+...|++++|...+++..+...-.++ ...+..+...+...|++++|.+.+++..+... +..+ ..
T Consensus 10 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 89 (164)
T 3ro3_A 10 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEA 89 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHH
Confidence 35566666777777777777777776653111111 24667778888888888888888877653210 0111 24
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhcCC------CChhhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 038200 399 IMWVSLLSLCRFQGAVAMVERLAKSFVDMDP------QDFSRYQFLLNVYAVAGQWEDVARVRELMKK 460 (523)
Q Consensus 399 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p------~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 460 (523)
..+..+...+...|++++|...++++.+..+ ....++..++.+|...|++++|.+.+++..+
T Consensus 90 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 90 QSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 5666777788899999999999999887422 1245788899999999999999999998765
No 181
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.30 E-value=5e-06 Score=78.01 Aligned_cols=140 Identities=10% Similarity=-0.132 Sum_probs=102.8
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhHhcCCCCChHHHH
Q 038200 286 VCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYW 365 (523)
Q Consensus 286 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 365 (523)
..+..+...+.+.|++++|+..|++.++. .+... .... .+...+ ..+.+...|.
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~-------~~~~~----------~~~~-------~~~~~~--~~~~~~~~~~ 277 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRY-------VEGSR----------AAAE-------DADGAK--LQPVALSCVL 277 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------HHHHH----------HHSC-------HHHHGG--GHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHH-------hhcCc----------cccC-------hHHHHH--HHHHHHHHHH
Confidence 35666666777777777777777776662 12110 0000 111111 0112467888
Q ss_pred HHHHHHHcCCChHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhhHHHHHHHHHhc
Q 038200 366 CMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVA 445 (523)
Q Consensus 366 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 445 (523)
.+..+|.+.|++++|++.++++++. .+.+...+..+..++...|++++|...++++.+++|++..++..+..++...
T Consensus 278 nla~~~~~~g~~~~A~~~~~~al~~---~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~ 354 (370)
T 1ihg_A 278 NIGACKLKMSDWQGAVDSCLEALEI---DPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKI 354 (370)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTT---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccCHHHHHHHHHHHHHh---CchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 8999999999999999999999864 2335778888888999999999999999999999999999999999999998
Q ss_pred CChhHHHHH
Q 038200 446 GQWEDVARV 454 (523)
Q Consensus 446 g~~~~A~~~ 454 (523)
++.+++.+.
T Consensus 355 ~~~~~a~k~ 363 (370)
T 1ihg_A 355 KAQKDKEKA 363 (370)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHHHH
Confidence 888877653
No 182
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.30 E-value=3e-06 Score=69.18 Aligned_cols=64 Identities=6% Similarity=0.021 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 038200 398 SIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKR 461 (523)
Q Consensus 398 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 461 (523)
...+..+..++...|++++|...++++++++|+++.+|..++.+|...|++++|...|++..+.
T Consensus 63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 63 IPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 3455666666777777777777777777777777777777777777777777777777766554
No 183
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.30 E-value=2.7e-06 Score=65.53 Aligned_cols=100 Identities=10% Similarity=-0.067 Sum_probs=77.6
Q ss_pred HHHHHHHHHhhcCcHHHHHHHHHHhhHhcCCCCChHHHHHHHHHHHcCCChHHHHHHHHhCCCCCCCCCc-hHHHHHHHH
Q 038200 327 TFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSF-ESIMWVSLL 405 (523)
Q Consensus 327 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~~~l~ 405 (523)
.+..+...+.+.|++++|...|+++.+. .+.+...|..+..++...|++++|+..+++..+. .| +...+..+.
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l----~P~~~~~~~~la 92 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQK--EPEREEAWRSLGLTQAENEKDGLAIIALNHARML----DPKDIAVHAALA 92 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTTCHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCCCHHHHHHHH
Confidence 3455667788899999999999999873 3446788888999999999999999999998853 44 466777888
Q ss_pred HHHHhcCCHHHHHHHHHHHhhcCCCCh
Q 038200 406 SLCRFQGAVAMVERLAKSFVDMDPQDF 432 (523)
Q Consensus 406 ~~~~~~g~~~~a~~~~~~~~~~~p~~~ 432 (523)
.++...|++++|...++++++.+|++.
T Consensus 93 ~~~~~~g~~~~A~~~~~~al~~~P~~~ 119 (121)
T 1hxi_A 93 VSHTNEHNANAALASLRAWLLSQPQYE 119 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC------
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCcCCC
Confidence 889999999999999999999888653
No 184
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.27 E-value=2.5e-06 Score=69.68 Aligned_cols=114 Identities=12% Similarity=-0.024 Sum_probs=83.5
Q ss_pred HHHHHHHHHhhcCcHHHHHHHHHHhhHhcC----------------CCCChHHHHHHHHHHHcCCChHHHHHHHHhCCCC
Q 038200 327 TFIGVICACVRAELLTEGRKYFRQMIDFYK----------------IKPNFAHYWCMANLYAGAELTEEAEEILRKMPED 390 (523)
Q Consensus 327 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~----------------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 390 (523)
.+......+.+.|++++|...|++..+... .+.+...|..+..+|.+.|++++|+..++++++.
T Consensus 13 ~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~ 92 (162)
T 3rkv_A 13 ALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKR 92 (162)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhc
Confidence 445555566666666666666666655200 1123467888999999999999999999998853
Q ss_pred CCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCh-hhHHHHHHHHH
Q 038200 391 NDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDF-SRYQFLLNVYA 443 (523)
Q Consensus 391 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~-~~~~~l~~~~~ 443 (523)
.+.+...+..+..++...|++++|...++++++++|+++ .+...+..+..
T Consensus 93 ---~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~ 143 (162)
T 3rkv_A 93 ---EETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVTE 143 (162)
T ss_dssp ---STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHH
T ss_pred ---CCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 233577888888899999999999999999999999887 44555544433
No 185
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.26 E-value=2.1e-06 Score=79.66 Aligned_cols=149 Identities=8% Similarity=-0.108 Sum_probs=80.1
Q ss_pred hHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhHhcCCCCChHHH
Q 038200 285 LVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHY 364 (523)
Q Consensus 285 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 364 (523)
...+..+...+...|++++|...|++.+. ..|+... +...++.+++...+ . ...|
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~-------~~p~~~~-------~~~~~~~~~~~~~l---~--------~~~~ 233 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIA-------YMGDDFM-------FQLYGKYQDMALAV---K--------NPCH 233 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHH-------HSCHHHH-------HTCCHHHHHHHHHH---H--------THHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHH-------Hhccchh-------hhhcccHHHHHHHH---H--------HHHH
Confidence 45677777778888888888888888877 6666542 22333444333221 1 1367
Q ss_pred HHHHHHHHcCCChHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhhHHHHHHHHH-
Q 038200 365 WCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYA- 443 (523)
Q Consensus 365 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~- 443 (523)
..+..+|.+.|++++|+..+++.++. .+.+...+..+..++...|++++|...++++++++|+++.++..|..+..
T Consensus 234 ~nla~~~~~~g~~~~A~~~~~~al~~---~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~ 310 (338)
T 2if4_A 234 LNIAACLIKLKRYDEAIGHCNIVLTE---EEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQ 310 (338)
T ss_dssp HHHHHHHHTTTCCHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC------------------
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence 77888888888888888888887753 23356677778888888888888888888888888888888888777743
Q ss_pred hcCChhHHHHHHHHHHhC
Q 038200 444 VAGQWEDVARVRELMKKR 461 (523)
Q Consensus 444 ~~g~~~~A~~~~~~m~~~ 461 (523)
..+..+++...|++|...
T Consensus 311 ~~~~~~~a~~~~~~~l~~ 328 (338)
T 2if4_A 311 EKALYQKQKEMYKGIFKG 328 (338)
T ss_dssp ------------------
T ss_pred HHHHHHHHHHHHHHhhCC
Confidence 456677777788777554
No 186
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.25 E-value=0.00017 Score=65.51 Aligned_cols=213 Identities=8% Similarity=0.010 Sum_probs=119.6
Q ss_pred HHHHHHHHHHHHcCCCCchHHHHHHhhhhhhcCC----------hHHHHHHHHhcCC---CChHHHHHHHHHHHhcC--C
Q 038200 236 NEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQK----------VEVAQRVFDSMAD---RNLVCWNAMILGHCIHG--K 300 (523)
Q Consensus 236 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g--~ 300 (523)
++|..+++.+...++. +..+|+.--..+...+. +++++.+++.+.. .+..+|+.-...+...+ .
T Consensus 47 ~eaL~~t~~~L~~nP~-~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~ 125 (331)
T 3dss_A 47 ESVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPN 125 (331)
T ss_dssp HHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCC
T ss_pred HHHHHHHHHHHHHCch-hHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCccc
Confidence 4677888877775422 34445433333322222 4566666666643 45667776666666666 3
Q ss_pred hHHHHHHHHHHHhCCCCCCCcCCCHHHHHHHHHHHhhcCc-HHHHHHHHHHhhHhcCCCCChHHHHHHHHHHHcC-----
Q 038200 301 PEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAEL-LTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGA----- 374 (523)
Q Consensus 301 ~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~ll~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----- 374 (523)
+++++.++.++.+.. +-|...|+.-...+...|. ++++++.++++.+. .+-|...|+....++.+.
T Consensus 126 ~~~EL~~~~k~l~~d------prNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~--~p~N~SAW~~R~~ll~~l~~~~~ 197 (331)
T 3dss_A 126 WARELELCARFLEAD------ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITR--NFSNYSSWHYRSCLLPQLHPQPD 197 (331)
T ss_dssp HHHHHHHHHHHHHHC------TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHHSCCC-
T ss_pred HHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHhhhccc
Confidence 678888888887753 3355566655555566666 57777777777773 334556666555554443
Q ss_pred ---------CChHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHhc-----------CCHHHHHHHHHHHhhcCCCChhh
Q 038200 375 ---------ELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQ-----------GAVAMVERLAKSFVDMDPQDFSR 434 (523)
Q Consensus 375 ---------g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----------g~~~~a~~~~~~~~~~~p~~~~~ 434 (523)
+.++++++.+.+.... .+-|...|+-+-..+... +.++++.+.++++.+++|++.-+
T Consensus 198 ~~~~~~~~~~~~~eEle~~~~ai~~---~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd~~w~ 274 (331)
T 3dss_A 198 SGPQGRLPENVLLKELELVQNAFFT---DPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEPENKWC 274 (331)
T ss_dssp -----CCCHHHHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTTCHHH
T ss_pred cccccccchHHHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCcccchH
Confidence 3466677777766642 233455555444433333 34667777777777777766443
Q ss_pred HHHHHHHH---HhcCChhHHHHHHHHHHh
Q 038200 435 YQFLLNVY---AVAGQWEDVARVRELMKK 460 (523)
Q Consensus 435 ~~~l~~~~---~~~g~~~~A~~~~~~m~~ 460 (523)
+..++... ...|..+++...+.++++
T Consensus 275 l~~~~~~~~~~~~~~~~~~~~~~l~~l~~ 303 (331)
T 3dss_A 275 LLTIILLMRALDPLLYEKETLQYFSTLKA 303 (331)
T ss_dssp HHHHHHHHHHHCTTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcccccHHHHHHHHHHHHH
Confidence 33332221 123444455555555543
No 187
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.23 E-value=1.1e-06 Score=67.25 Aligned_cols=96 Identities=13% Similarity=0.045 Sum_probs=71.6
Q ss_pred hcCcHHHHHHHHHHhhHhcC--CCCChHHHHHHHHHHHcCCChHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHhcCCH
Q 038200 337 RAELLTEGRKYFRQMIDFYK--IKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAV 414 (523)
Q Consensus 337 ~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 414 (523)
..|++++|+..|++..+. + -+.+...+..+..+|...|++++|++.++++.+. .+.+...+..+..++...|++
T Consensus 2 ~~g~~~~A~~~~~~al~~-~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~g~~ 77 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIAS-GLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQ---FPNHQALRVFYAMVLYNLGRY 77 (117)
T ss_dssp -----CCCHHHHHHHHSS-CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHTCH
T ss_pred CCCcHHHHHHHHHHHHHc-CCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCchHHHHHHHHHHHHcCCH
Confidence 357788888888888763 2 1334677888888999999999999999988853 233466777788889999999
Q ss_pred HHHHHHHHHHhhcCCCChhhHH
Q 038200 415 AMVERLAKSFVDMDPQDFSRYQ 436 (523)
Q Consensus 415 ~~a~~~~~~~~~~~p~~~~~~~ 436 (523)
++|...++++++..|+++....
T Consensus 78 ~~A~~~~~~al~~~p~~~~~~~ 99 (117)
T 3k9i_A 78 EQGVELLLKIIAETSDDETIQS 99 (117)
T ss_dssp HHHHHHHHHHHHHHCCCHHHHH
T ss_pred HHHHHHHHHHHHhCCCcHHHHH
Confidence 9999999999999888776543
No 188
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.20 E-value=6.1e-06 Score=76.53 Aligned_cols=153 Identities=10% Similarity=-0.021 Sum_probs=86.2
Q ss_pred hHHHHHHhhhhhhcCChHHHHHHHHhcCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcCCCHHHHHHHHH
Q 038200 254 IILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVIC 333 (523)
Q Consensus 254 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~ll~ 333 (523)
...+..+...+.+.|++++|+..|++....+.... .+...++..++...+. ...|..+..
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~-----~~~~~~~~~~~~~~l~---------------~~~~~nla~ 238 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDF-----MFQLYGKYQDMALAVK---------------NPCHLNIAA 238 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHH-----HHTCCHHHHHHHHHHH---------------THHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccch-----hhhhcccHHHHHHHHH---------------HHHHHHHHH
Confidence 45677888899999999999999998765322211 1223334444332221 126778888
Q ss_pred HHhhcCcHHHHHHHHHHhhHhcCCCCChHHHHHHHHHHHcCCChHHHHHHHHhCCCCCCCCCch-HHHHHHHHHH-HHhc
Q 038200 334 ACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFE-SIMWVSLLSL-CRFQ 411 (523)
Q Consensus 334 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~~~l~~~-~~~~ 411 (523)
++.+.|++++|+..++++.+. .+.+...|..+..+|...|++++|.+.|+++.+ +.|+ ...+..+... ....
T Consensus 239 ~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~----l~p~~~~a~~~L~~l~~~~~ 312 (338)
T 2if4_A 239 CLIKLKRYDEAIGHCNIVLTE--EEKNPKALFRRGKAKAELGQMDSARDDFRKAQK----YAPDDKAIRRELRALAEQEK 312 (338)
T ss_dssp HHHTTTCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC------------------------
T ss_pred HHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----HCCCCHHHHHHHHHHHHHHH
Confidence 999999999999999999884 344688899999999999999999999999986 3454 3444444444 3445
Q ss_pred CCHHHHHHHHHHHhhcCCCCh
Q 038200 412 GAVAMVERLAKSFVDMDPQDF 432 (523)
Q Consensus 412 g~~~~a~~~~~~~~~~~p~~~ 432 (523)
+..+.+...++++.+..|.++
T Consensus 313 ~~~~~a~~~~~~~l~~~p~~~ 333 (338)
T 2if4_A 313 ALYQKQKEMYKGIFKGKDEGG 333 (338)
T ss_dssp ---------------------
T ss_pred HHHHHHHHHHHHhhCCCCCCC
Confidence 678888999999999888654
No 189
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.18 E-value=8.5e-05 Score=73.73 Aligned_cols=170 Identities=11% Similarity=-0.016 Sum_probs=132.9
Q ss_pred hHHHHHHHHhcCC---CChHHHHHHHHHHHhcCC----------hHHHHHHHHHHHhCCCCCCCcCCCHHHHHHHHHHHh
Q 038200 270 VEVAQRVFDSMAD---RNLVCWNAMILGHCIHGK----------PEEGIKLFTALVNGTVAGGSISPDEITFIGVICACV 336 (523)
Q Consensus 270 ~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~----------~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~ll~~~~ 336 (523)
.++|++.++++.. .+..+|+.--.++...|+ ++++++.++++.... +-+..+|..-..++.
T Consensus 45 ~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~------pK~y~aW~hR~w~l~ 118 (567)
T 1dce_A 45 DESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN------PKSYGTWHHRCWLLS 118 (567)
T ss_dssp SHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC------TTCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC------CCCHHHHHHHHHHHH
Confidence 4566777777643 345567666666666666 899999999999854 335667877777788
Q ss_pred hcC--cHHHHHHHHHHhhHhcCCCCChHHHHHHHHHHHcCC-ChHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHhc--
Q 038200 337 RAE--LLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAE-LTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQ-- 411 (523)
Q Consensus 337 ~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-- 411 (523)
+.+ +++++++.++++.+. -+-+...|+.-..++.+.| .++++++.++++.+. .+-+...|+.....+...
T Consensus 119 ~l~~~~~~~el~~~~k~l~~--d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~---~p~n~saW~~r~~ll~~l~~ 193 (567)
T 1dce_A 119 RLPEPNWARELELCARFLEA--DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITR---NFSNYSSWHYRSCLLPQLHP 193 (567)
T ss_dssp TCSSCCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTT---TCCCHHHHHHHHHHHHHHSC
T ss_pred HcccccHHHHHHHHHHHHhh--ccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHH---CCCCccHHHHHHHHHHhhcc
Confidence 888 779999999999984 3446788888788888888 899999999999864 344677777777766553
Q ss_pred ------------CCHHHHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChhH
Q 038200 412 ------------GAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWED 450 (523)
Q Consensus 412 ------------g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 450 (523)
+.++++.+.+++++..+|++..+|..+..++.+.+++++
T Consensus 194 ~~~~~~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 194 QPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp CCCSSSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred cccccccccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccc
Confidence 557999999999999999999999999999999998665
No 190
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.17 E-value=8.5e-07 Score=67.04 Aligned_cols=95 Identities=8% Similarity=-0.081 Sum_probs=78.0
Q ss_pred ChHHHHHHHHHHHcCCChHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCC------hh
Q 038200 360 NFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQD------FS 433 (523)
Q Consensus 360 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~------~~ 433 (523)
+...+..+...+...|++++|.+.+++..+. .+.+...+..+..++...|++++|...++++++++|++ ..
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 79 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITA---QPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSK 79 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHH
Confidence 4567778888899999999999999988753 23356778888888999999999999999999999987 77
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHH
Q 038200 434 RYQFLLNVYAVAGQWEDVARVREL 457 (523)
Q Consensus 434 ~~~~l~~~~~~~g~~~~A~~~~~~ 457 (523)
++..++.++...|++++|...+++
T Consensus 80 ~~~~~~~~~~~~~~~~~a~~~~~~ 103 (111)
T 2l6j_A 80 LQYRLELAQGAVGSVQIPVVEVDE 103 (111)
T ss_dssp HHHHHHHHHHHHHCCCCCSSSSSS
T ss_pred HHHHHHHHHHHHHhHhhhHhHHHH
Confidence 888888888888888877665543
No 191
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.14 E-value=1.9e-05 Score=63.90 Aligned_cols=139 Identities=12% Similarity=0.062 Sum_probs=100.5
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcCCC----HHHHHHHHHHHhhcCcHHHHHHHHHHhhHhcCCCCC-
Q 038200 286 VCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPD----EITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPN- 360 (523)
Q Consensus 286 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~- 360 (523)
.++..+...+...|++++|...+++...... -.++ ..++..+...+...|++++|...+++..+...-.++
T Consensus 10 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~----~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~ 85 (164)
T 3ro3_A 10 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAK----EFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDR 85 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH----HHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH----HhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCc
Confidence 3567777788888899999888888776320 0011 146777888899999999999999987763211111
Q ss_pred ---hHHHHHHHHHHHcCCChHHHHHHHHhCCCCC--CCCCc-hHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcC
Q 038200 361 ---FAHYWCMANLYAGAELTEEAEEILRKMPEDN--DNMSF-ESIMWVSLLSLCRFQGAVAMVERLAKSFVDMD 428 (523)
Q Consensus 361 ---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 428 (523)
...+..+...+...|++++|.+.+++..+.. .+..+ ....+..+...+...|++++|...++++.++.
T Consensus 86 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 159 (164)
T 3ro3_A 86 AVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEIS 159 (164)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Confidence 4567788889999999999999998876321 01111 24566777778999999999999999988753
No 192
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.12 E-value=1.4e-05 Score=77.48 Aligned_cols=133 Identities=10% Similarity=0.038 Sum_probs=102.1
Q ss_pred HHhhcCcHHHHHHHHHHhhHhcC--CC---C-ChHHHHHHHHHHHcCCChHHHHHHHHhCCCC-----CCCCCch-HHHH
Q 038200 334 ACVRAELLTEGRKYFRQMIDFYK--IK---P-NFAHYWCMANLYAGAELTEEAEEILRKMPED-----NDNMSFE-SIMW 401 (523)
Q Consensus 334 ~~~~~~~~~~a~~~~~~~~~~~~--~~---~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~-~~~~ 401 (523)
.+..+|++++|+.++++..+... +. | ...+++.|..+|...|++++|..++++.++. +. ..|+ ..++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~-~Hp~~a~~l 396 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHH-NNAQLGMAV 396 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCT-TCHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHH
Confidence 35578999999999988766421 11 2 2567899999999999999999888776422 22 2343 6788
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhh-----cCCCChh---hHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCC
Q 038200 402 VSLLSLCRFQGAVAMVERLAKSFVD-----MDPQDFS---RYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMP 467 (523)
Q Consensus 402 ~~l~~~~~~~g~~~~a~~~~~~~~~-----~~p~~~~---~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~ 467 (523)
+.|...|..+|++++|+.+++++++ ++|++|. +...|..++...|++++|..++.+++++.....|
T Consensus 397 ~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~~~~~~ 470 (490)
T 3n71_A 397 MRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAALNNQP 470 (490)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC--
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 8999999999999999999999986 5777655 4557888888999999999999999886543333
No 193
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.11 E-value=6.6e-06 Score=65.43 Aligned_cols=112 Identities=15% Similarity=0.011 Sum_probs=78.6
Q ss_pred HHHHHHHHhhcCcHHHHHHHHHHhhHhcCCCC-----C-----hHHHHHHHHHHHcCCChHHHHHHHHhCCCC---CCCC
Q 038200 328 FIGVICACVRAELLTEGRKYFRQMIDFYKIKP-----N-----FAHYWCMANLYAGAELTEEAEEILRKMPED---NDNM 394 (523)
Q Consensus 328 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~ 394 (523)
+......+.+.|++++|+..|++..+...-.| + ...|..+..++.+.|++++|+..+++.++. ...+
T Consensus 14 ~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~ 93 (159)
T 2hr2_A 14 ALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGEL 93 (159)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccC
Confidence 34444556666777777777776665311100 1 237888888888889988888888887741 0001
Q ss_pred Cch-HHHH----HHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhhHHHHH
Q 038200 395 SFE-SIMW----VSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLL 439 (523)
Q Consensus 395 ~~~-~~~~----~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 439 (523)
.|+ ...| .....++...|++++|...|+++++++|++..++..+.
T Consensus 94 ~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~~~ 143 (159)
T 2hr2_A 94 NQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGKE 143 (159)
T ss_dssp TSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTHH
T ss_pred CCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHH
Confidence 564 5677 88888999999999999999999999998776655444
No 194
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=98.06 E-value=1.8e-05 Score=57.00 Aligned_cols=83 Identities=20% Similarity=0.168 Sum_probs=62.6
Q ss_pred hHHHHHHHHHHHcCCChHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhhHHHHHH
Q 038200 361 FAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLN 440 (523)
Q Consensus 361 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 440 (523)
...+..+...+...|++++|.+.+++..+. .+.+...+..+...+...|++++|...++++.+.+|+++.++..++.
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~ 85 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALEL---DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGN 85 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhc---CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 456667777777888888888888777643 12345667777778888888888888888888888888888888888
Q ss_pred HHHhcC
Q 038200 441 VYAVAG 446 (523)
Q Consensus 441 ~~~~~g 446 (523)
++...|
T Consensus 86 ~~~~~g 91 (91)
T 1na3_A 86 AKQKQG 91 (91)
T ss_dssp HHHHHC
T ss_pred HHHhcC
Confidence 776654
No 195
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=98.04 E-value=1.6e-05 Score=60.45 Aligned_cols=80 Identities=13% Similarity=0.056 Sum_probs=61.4
Q ss_pred HHHHHHHhCCCCCCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHH
Q 038200 379 EAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELM 458 (523)
Q Consensus 379 ~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 458 (523)
+|++.+++..+. .+.+...+..+...+...|++++|...++++++.+|+++..+..++.+|...|++++|...|++.
T Consensus 3 ~a~~~~~~al~~---~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 79 (115)
T 2kat_A 3 AITERLEAMLAQ---GTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESG 79 (115)
T ss_dssp CHHHHHHHHHTT---TCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh---CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 456666666643 23356677777778888888888888888888888888888888888888888888888888877
Q ss_pred HhC
Q 038200 459 KKR 461 (523)
Q Consensus 459 ~~~ 461 (523)
.+.
T Consensus 80 l~~ 82 (115)
T 2kat_A 80 LAA 82 (115)
T ss_dssp HHH
T ss_pred HHh
Confidence 654
No 196
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=98.02 E-value=2.9e-05 Score=57.26 Aligned_cols=66 Identities=14% Similarity=0.090 Sum_probs=60.0
Q ss_pred chHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 038200 396 FESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKR 461 (523)
Q Consensus 396 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 461 (523)
.+...+..+...+...|++++|...++++++.+|+++.+|..++.+|...|++++|+..+++..+.
T Consensus 5 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 70 (100)
T 3ma5_A 5 EDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEV 70 (100)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 356778888889999999999999999999999999999999999999999999999999988664
No 197
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.97 E-value=2.9e-05 Score=72.74 Aligned_cols=65 Identities=3% Similarity=-0.112 Sum_probs=60.8
Q ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 038200 397 ESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKR 461 (523)
Q Consensus 397 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 461 (523)
+...+..+..++...|++++|...++++++++|+++.++..++.+|...|++++|+..+++..+.
T Consensus 272 ~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l 336 (370)
T 1ihg_A 272 ALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEI 336 (370)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 46778888889999999999999999999999999999999999999999999999999998775
No 198
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=97.93 E-value=6.8e-05 Score=72.63 Aligned_cols=145 Identities=9% Similarity=-0.004 Sum_probs=110.8
Q ss_pred cCChHHHHHHHHhcCC---CChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcCCC----------------HHH
Q 038200 267 CQKVEVAQRVFDSMAD---RNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPD----------------EIT 327 (523)
Q Consensus 267 ~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~p~----------------~~~ 327 (523)
.+++++|...|+...+ .....|..+...|.+.|++++|+..|++.+.. .|+ ...
T Consensus 247 l~~~~~A~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~-------~p~~~~~~~~~~~~~~~~~~~~ 319 (457)
T 1kt0_A 247 LKSFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSW-------LEMEYGLSEKESKASESFLLAA 319 (457)
T ss_dssp EEEEECCCCGGGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------HTTCCSCCHHHHHHHHHHHHHH
T ss_pred hhhcccCcchhhcCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-------hcccccCChHHHHHHHHHHHHH
Confidence 3445555555544332 23457888889999999999999999999884 343 478
Q ss_pred HHHHHHHHhhcCcHHHHHHHHHHhhHhcCCCCChHHHHHHHHHHHcCCChHHHHHHHHhCCCCCCCCCc-hHHHHHHHHH
Q 038200 328 FIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSF-ESIMWVSLLS 406 (523)
Q Consensus 328 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~~~l~~ 406 (523)
|..+..+|.+.|++++|+..++++.+. .+.+...|..+..+|...|++++|...|+++.+. .| +...+..+..
T Consensus 320 ~~nla~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l----~P~~~~a~~~l~~ 393 (457)
T 1kt0_A 320 FLNLAMCYLKLREYTKAVECCDKALGL--DSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV----NPQNKAARLQISM 393 (457)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT----C----CHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh----CCCCHHHHHHHHH
Confidence 889999999999999999999999984 3456888999999999999999999999999863 44 4556677777
Q ss_pred HHHhcCCHHHHHH-HHHHH
Q 038200 407 LCRFQGAVAMVER-LAKSF 424 (523)
Q Consensus 407 ~~~~~g~~~~a~~-~~~~~ 424 (523)
++...++.+++.+ .++.+
T Consensus 394 ~~~~~~~~~~a~~~~~~~~ 412 (457)
T 1kt0_A 394 CQKKAKEHNERDRRIYANM 412 (457)
T ss_dssp HHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 7888888777654 34443
No 199
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.84 E-value=0.00013 Score=52.63 Aligned_cols=70 Identities=7% Similarity=0.075 Sum_probs=60.2
Q ss_pred CchHHHHHHHHHHHHhcCC---HHHHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCc
Q 038200 395 SFESIMWVSLLSLCRFQGA---VAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMG 464 (523)
Q Consensus 395 ~~~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 464 (523)
+.++..+..+..++...++ .++|..+++++++.+|+++.+...++..+.+.|++++|+..|+++.+....
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~ 75 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP 75 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 4566777777777654544 799999999999999999999999999999999999999999999887544
No 200
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.79 E-value=1.3e-05 Score=63.63 Aligned_cols=84 Identities=7% Similarity=-0.031 Sum_probs=59.1
Q ss_pred CChHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHhcCC----------HHHHHHHHHHHhhcCCCChhhHHHHHHHHHh
Q 038200 375 ELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGA----------VAMVERLAKSFVDMDPQDFSRYQFLLNVYAV 444 (523)
Q Consensus 375 g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 444 (523)
+.+++|.+.+++..+. -+.+...|..+..++...++ +++|+..|+++++++|++..+|..++.+|..
T Consensus 16 ~~feeA~~~~~~Ai~l---~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~ 92 (158)
T 1zu2_A 16 LLFEQIRQDAENTYKS---NPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTS 92 (158)
T ss_dssp HHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHH
Confidence 3455555555555532 12234444444444444443 5699999999999999999999999999988
Q ss_pred cC-----------ChhHHHHHHHHHHhC
Q 038200 445 AG-----------QWEDVARVRELMKKR 461 (523)
Q Consensus 445 ~g-----------~~~~A~~~~~~m~~~ 461 (523)
.| ++++|++.|++..+.
T Consensus 93 lg~l~P~~~~a~g~~~eA~~~~~kAl~l 120 (158)
T 1zu2_A 93 FAFLTPDETEAKHNFDLATQFFQQAVDE 120 (158)
T ss_dssp HHHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcccCcchhhhhccHHHHHHHHHHHHHh
Confidence 75 788999998888664
No 201
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.76 E-value=0.00016 Score=54.10 Aligned_cols=67 Identities=9% Similarity=-0.051 Sum_probs=61.3
Q ss_pred chHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 038200 396 FESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRR 462 (523)
Q Consensus 396 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 462 (523)
++...+..+...+...|++++|...++++++.+|+++.++..++.+|...|++++|+..+++..+..
T Consensus 2 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 68 (111)
T 2l6j_A 2 SQFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYT 68 (111)
T ss_dssp THHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC
T ss_pred chHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence 3456778888899999999999999999999999999999999999999999999999999997653
No 202
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.73 E-value=0.00047 Score=54.16 Aligned_cols=112 Identities=8% Similarity=-0.064 Sum_probs=89.0
Q ss_pred CcHHHHHHHHHHhhHhcCCCCChHHHHHHHHHHHcCCChHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHh----cCCH
Q 038200 339 ELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRF----QGAV 414 (523)
Q Consensus 339 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~ 414 (523)
+++++|.++|++..+. + .|... |...|...+.+++|.++|++..+. -+......+...|.. .++.
T Consensus 9 ~d~~~A~~~~~~aa~~-g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~-----g~~~a~~~Lg~~y~~G~g~~~d~ 77 (138)
T 1klx_A 9 KDLKKAIQYYVKACEL-N-EMFGC----LSLVSNSQINKQKLFQYLSKACEL-----NSGNGCRFLGDFYENGKYVKKDL 77 (138)
T ss_dssp HHHHHHHHHHHHHHHT-T-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHT-----TCHHHHHHHHHHHHHCSSSCCCH
T ss_pred cCHHHHHHHHHHHHcC-C-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcC-----CCHHHHHHHHHHHHcCCCCCccH
Confidence 5678899999988885 4 33332 777788888888899999988843 345566677777777 7899
Q ss_pred HHHHHHHHHHhhcCCCChhhHHHHHHHHHh----cCChhHHHHHHHHHHhCCC
Q 038200 415 AMVERLAKSFVDMDPQDFSRYQFLLNVYAV----AGQWEDVARVRELMKKRRM 463 (523)
Q Consensus 415 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~~~ 463 (523)
++|..+++++.+. .++.++..|+.+|.. .+++++|...|++..+.|.
T Consensus 78 ~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 78 RKAAQYYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp HHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHcC--CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence 9999999998876 467889999999998 8999999999999888764
No 203
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.70 E-value=0.00097 Score=66.17 Aligned_cols=152 Identities=9% Similarity=0.025 Sum_probs=121.8
Q ss_pred cCChHHHHHHHHHHHhCCCCCCCcCCC-HHHHHHHHHHHhhcCc----------HHHHHHHHHHhhHhcCCCCChHHHHH
Q 038200 298 HGKPEEGIKLFTALVNGTVAGGSISPD-EITFIGVICACVRAEL----------LTEGRKYFRQMIDFYKIKPNFAHYWC 366 (523)
Q Consensus 298 ~g~~~~a~~~~~~m~~~~~~~~~~~p~-~~~~~~ll~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~~ 366 (523)
....++|++.+++++.. .|+ ...|+.--.++...|+ +++++..++.+.+. .+-+..+|..
T Consensus 42 ~~~~eeal~~~~~~l~~-------nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~--~pK~y~aW~h 112 (567)
T 1dce_A 42 GELDESVLELTSQILGA-------NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV--NPKSYGTWHH 112 (567)
T ss_dssp TCCSHHHHHHHHHHHHH-------CTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHH
T ss_pred CCCCHHHHHHHHHHHHH-------CchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHh--CCCCHHHHHH
Confidence 34567889999999994 465 4456555555555555 89999999999984 4456788888
Q ss_pred HHHHHHcCC--ChHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHhcC-CHHHHHHHHHHHhhcCCCChhhHHHHHHHHH
Q 038200 367 MANLYAGAE--LTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQG-AVAMVERLAKSFVDMDPQDFSRYQFLLNVYA 443 (523)
Q Consensus 367 l~~~~~~~g--~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 443 (523)
-..++.+.| +++++++.++++.+. -+-+...|+.-.......| .++++.+.++++++.+|.+..+|...+.++.
T Consensus 113 R~w~l~~l~~~~~~~el~~~~k~l~~---d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~ 189 (567)
T 1dce_A 113 RCWLLSRLPEPNWARELELCARFLEA---DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLP 189 (567)
T ss_dssp HHHHHHTCSSCCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHH
T ss_pred HHHHHHHcccccHHHHHHHHHHHHhh---ccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHH
Confidence 888888999 779999999999964 2446778888887888888 8999999999999999999999999999988
Q ss_pred hc--------------CChhHHHHHHHHHHhC
Q 038200 444 VA--------------GQWEDVARVRELMKKR 461 (523)
Q Consensus 444 ~~--------------g~~~~A~~~~~~m~~~ 461 (523)
+. ++++++++.+++....
T Consensus 190 ~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~ 221 (567)
T 1dce_A 190 QLHPQPDSGPQGRLPENVLLKELELVQNAFFT 221 (567)
T ss_dssp HHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHH
T ss_pred hhcccccccccccccHHHHHHHHHHHHHHHhh
Confidence 74 5567888888777654
No 204
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.69 E-value=0.00014 Score=55.04 Aligned_cols=83 Identities=18% Similarity=0.080 Sum_probs=62.2
Q ss_pred HHHHHHHHhhHhcCCCCChHHHHHHHHHHHcCCChHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHhcCCHHHHHHHHH
Q 038200 343 EGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAK 422 (523)
Q Consensus 343 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 422 (523)
.|...|++..+ ..+.+...+..+...|...|++++|.+.+++..+. .+.+...+..+..++...|++++|...++
T Consensus 3 ~a~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 77 (115)
T 2kat_A 3 AITERLEAMLA--QGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDF---DPTYSVAWKWLGKTLQGQGDRAGARQAWE 77 (115)
T ss_dssp CHHHHHHHHHT--TTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHH--hCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH---CCCcHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 35666777665 23446777888888888888888888888888753 23346677777888888899999999998
Q ss_pred HHhhcCCC
Q 038200 423 SFVDMDPQ 430 (523)
Q Consensus 423 ~~~~~~p~ 430 (523)
++.+..|.
T Consensus 78 ~al~~~~~ 85 (115)
T 2kat_A 78 SGLAAAQS 85 (115)
T ss_dssp HHHHHHHH
T ss_pred HHHHhccc
Confidence 88887763
No 205
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.63 E-value=0.0002 Score=69.36 Aligned_cols=133 Identities=11% Similarity=-0.122 Sum_probs=94.7
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCC-CCcCCC-HHHHHHHHHHHhhcCcHHHHHHHHHHhhHhc----C-CCC-ChHHH
Q 038200 293 LGHCIHGKPEEGIKLFTALVNGTVAG-GSISPD-EITFIGVICACVRAELLTEGRKYFRQMIDFY----K-IKP-NFAHY 364 (523)
Q Consensus 293 ~~~~~~g~~~~a~~~~~~m~~~~~~~-~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~----~-~~~-~~~~~ 364 (523)
..+...|++++|+.++++..+....- +.-.|+ ..+++.|..+|...|++++|..++++..+.+ | ..| ...++
T Consensus 317 ~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l 396 (490)
T 3n71_A 317 DKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAV 396 (490)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHH
Confidence 34567899999999998876532100 011232 4578899999999999999999998876531 1 122 25678
Q ss_pred HHHHHHHHcCCChHHHHHHHHhCCCC-----CCCCCch-HHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 038200 365 WCMANLYAGAELTEEAEEILRKMPED-----NDNMSFE-SIMWVSLLSLCRFQGAVAMVERLAKSFVD 426 (523)
Q Consensus 365 ~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 426 (523)
+.|...|...|++++|+.++++..+. +. -.|+ ..+...+..++...+.+++|+..+.++.+
T Consensus 397 ~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~-~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 397 MRAGLTNWHAGHIEVGHGMICKAYAILLVTHGP-SHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCT-TSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999988876522 22 2344 34445555677888999999999999876
No 206
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.63 E-value=0.00033 Score=50.08 Aligned_cols=65 Identities=15% Similarity=0.217 Sum_probs=60.0
Q ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 038200 397 ESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKR 461 (523)
Q Consensus 397 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 461 (523)
+...+..+...+...|++++|...++++.+..|+++.++..++.+|...|++++|...+++..+.
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 72 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 72 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 45677788888999999999999999999999999999999999999999999999999998775
No 207
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.61 E-value=6e-05 Score=55.28 Aligned_cols=56 Identities=16% Similarity=0.253 Sum_probs=35.3
Q ss_pred HHHHhcCCHHHHHHHHHHHhhcCCCChh-hHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 038200 406 SLCRFQGAVAMVERLAKSFVDMDPQDFS-RYQFLLNVYAVAGQWEDVARVRELMKKR 461 (523)
Q Consensus 406 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~-~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 461 (523)
..+...|++++|...++++++.+|+++. .+..++.+|...|++++|...|++..+.
T Consensus 8 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 64 (99)
T 2kc7_A 8 KELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64 (99)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 3455566666666666666666666666 6666666666666666666666666554
No 208
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.57 E-value=7.2e-05 Score=59.33 Aligned_cols=113 Identities=10% Similarity=-0.003 Sum_probs=75.5
Q ss_pred hcCcHHHHHHHHHHhhHhcCCCCChHHHHHHHHHHHcCCC----------hHHHHHHHHhCCCCCCCCCc-hHHHHHHHH
Q 038200 337 RAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAEL----------TEEAEEILRKMPEDNDNMSF-ESIMWVSLL 405 (523)
Q Consensus 337 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------~~~A~~~~~~~~~~~~~~~~-~~~~~~~l~ 405 (523)
+.+.+++|.+.++...+. -+.+...|..+..++...++ +++|+..|++.++ +.| +...|..+.
T Consensus 14 r~~~feeA~~~~~~Ai~l--~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~----ldP~~~~A~~~LG 87 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKS--NPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALL----IDPKKDEAVWCIG 87 (158)
T ss_dssp HHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHH----HCTTCHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHH----hCcCcHHHHHHHH
Confidence 445667777777777763 33456677767777776655 3588888888875 344 466777788
Q ss_pred HHHHhc-----------CCHHHHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 038200 406 SLCRFQ-----------GAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRR 462 (523)
Q Consensus 406 ~~~~~~-----------g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 462 (523)
.+|... |++++|...|+++++++|++. .|...+.. .++|-++.-.+...+
T Consensus 88 ~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~-~y~~al~~------~~ka~el~~~~~~~~ 148 (158)
T 1zu2_A 88 NAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNT-HYLKSLEM------TAKAPQLHAEAYKQG 148 (158)
T ss_dssp HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCH-HHHHHHHH------HHTHHHHHHHHHHSS
T ss_pred HHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCCCCH-HHHHHHHH------HHhCHhccCcccccc
Confidence 887766 489999999999999999875 33322222 234555555554443
No 209
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=97.56 E-value=6.3e-06 Score=76.43 Aligned_cols=259 Identities=12% Similarity=0.089 Sum_probs=179.2
Q ss_pred HhhccCCchhHHHHhcc-CC---C--------CCcccHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCcccHHHHHHHH
Q 038200 30 HSADFGSPDYTVLVFKC-IN---N--------PGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSC 97 (523)
Q Consensus 30 ~~~~~g~~~~A~~~~~~-~~---~--------~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~ 97 (523)
.|.|.+...+|.+++-+ +. + .....|..|..+....+...+|++.|- + .-|+..|..++.++
T Consensus 20 iykKf~~~~~A~~VL~e~i~~ldRa~eyA~~~n~p~VWs~LgkAqL~~~~v~eAIdsyI---k---A~Dps~y~eVi~~A 93 (624)
T 3lvg_A 20 HMLKFDVNTSAVQVLIEHIGNLDRAYEFAERCNEPAVWSQLAKAQLQKGMVKEAIDSYI---K---ADDPSSYMEVVQAA 93 (624)
T ss_dssp -------CCSTTTTCCGGGCCSTTTTTSSSSCCCCCCSSSHHHHTTTSSSCTTTTTSSC---C---CSCCCSSSHHHHHT
T ss_pred HHHhccCcHHHHHHHHHhccccHHHHHHHHHhCCccHHHHHHHHHHccCchHHHHHHHH---h---CCChHHHHHHHHHH
Confidence 45555555566655422 21 0 234578899999999999999887653 2 23666789999999
Q ss_pred HccCCchHHHHHHHHHHHhCCCCCchHHHHHHHHHHccCChHHHHHHHhhcCCCCcchHHHHHHHHHhcCCHHHHHHHHh
Q 038200 98 AKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFD 177 (523)
Q Consensus 98 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~ 177 (523)
.+.|.+++-..++....+..- ++.+=+.|+-+|++.++..+-++++. .|+......+..-|...|.++.|.-+|.
T Consensus 94 ~~~~~~edLv~yL~MaRk~~k--e~~IDteLi~ayAk~~rL~elEefl~---~~N~A~iq~VGDrcf~e~lYeAAKilys 168 (624)
T 3lvg_A 94 NTSGNWEELVKYLQMARKKAR--ESYVETELIFALAKTNRLAELEEFIN---GPNNAHIQQVGDRCYDEKMYDAAKLLYN 168 (624)
T ss_dssp TTSSCCTTHHHHHHTTSTTCC--STTTTHHHHHHHHTSCSSSTTTSTTS---CCSSSCTHHHHHHHHHSCCSTTSSTTGG
T ss_pred HhCCCHHHHHHHHHHHHHHhc--ccccHHHHHHHHHhhCcHHHHHHHHc---CCCcccHHHHHHHHHHccCHHHHHHHHH
Confidence 999999999998887766532 55566789999999998765443322 4777778888888999999999988888
Q ss_pred cCCC------------------------CChhHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccc
Q 038200 178 IMPE------------------------RNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSA 233 (523)
Q Consensus 178 ~~~~------------------------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~ 233 (523)
.+.. .++.||-.+-.+|...+.+.-|.-+--.++-. || ....++.-|...|
T Consensus 169 ~isN~akLAstLV~L~~yq~AVdaArKAns~ktWKeV~~ACvd~~EfrLAqicGLniIvh---ad--eL~elv~~YE~~G 243 (624)
T 3lvg_A 169 NVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVH---AD--ELEELINYYQDRG 243 (624)
T ss_dssp GSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCC---SS--CCSGGGSSSSTTC
T ss_pred hCccHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHhCchHHHHHHHhcchhccc---HH--HHHHHHHHHHhCC
Confidence 7752 47789999999999999988775544333321 22 2334566788888
Q ss_pred cHHHHHHHHHHHHHcCCCCchHHHHHHhhhhhhcCChHHHHHHHHhcCC----C-------ChHHHHHHHHHHHhcCChH
Q 038200 234 RFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMAD----R-------NLVCWNAMILGHCIHGKPE 302 (523)
Q Consensus 234 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~-------~~~~~~~li~~~~~~g~~~ 302 (523)
.+++-+.+++...... .....+|+-|.-.|++- ++++..+.++..-. | ....|.-++-.|++-.+++
T Consensus 244 ~f~ELIsLlEaglglE-rAHmGmFTELaILYsKY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~D 321 (624)
T 3lvg_A 244 YFEELITMLEAALGLE-RAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYD 321 (624)
T ss_dssp CCTTSTTTHHHHTTST-TCCHHHHHHHHHHHHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHH
T ss_pred CHHHHHHHHHHHhCCC-chhHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHH
Confidence 8888888888766432 34677888888888774 55666665554322 2 3456888888888888888
Q ss_pred HHHH
Q 038200 303 EGIK 306 (523)
Q Consensus 303 ~a~~ 306 (523)
.|..
T Consensus 322 nA~l 325 (624)
T 3lvg_A 322 NAII 325 (624)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7653
No 210
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.53 E-value=0.0016 Score=51.07 Aligned_cols=110 Identities=5% Similarity=-0.059 Sum_probs=83.4
Q ss_pred CCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHcCCCCchHHHHHHhhhhhh----cCChHHH
Q 038200 198 GNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSK----CQKVEVA 273 (523)
Q Consensus 198 ~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a 273 (523)
+++++|+.+|++..+.| .|+.. +...|...+..++|...|++..+.| +...+..|...|.. .+++++|
T Consensus 9 ~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A 80 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKA 80 (138)
T ss_dssp HHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred cCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHH
Confidence 45778888888888876 33433 6666777777888888888888865 56667777777777 6788888
Q ss_pred HHHHHhcCC-CChHHHHHHHHHHHh----cCChHHHHHHHHHHHhCC
Q 038200 274 QRVFDSMAD-RNLVCWNAMILGHCI----HGKPEEGIKLFTALVNGT 315 (523)
Q Consensus 274 ~~~~~~~~~-~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~ 315 (523)
...|++..+ .+...+..|...|.. .++.++|..+|++..+.|
T Consensus 81 ~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 81 AQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 888888754 466777778888877 788888888888888766
No 211
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.43 E-value=0.00038 Score=66.16 Aligned_cols=87 Identities=11% Similarity=0.044 Sum_probs=67.2
Q ss_pred cCCChHHHHHHHHhCCCC-----CCCCCch-HHHHHHHHHHHHhcCCHHHHHHHHHHHhh-----cCCCCh---hhHHHH
Q 038200 373 GAELTEEAEEILRKMPED-----NDNMSFE-SIMWVSLLSLCRFQGAVAMVERLAKSFVD-----MDPQDF---SRYQFL 438 (523)
Q Consensus 373 ~~g~~~~A~~~~~~~~~~-----~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~p~~~---~~~~~l 438 (523)
..|++++|+.++++.++. +. ..|+ ..+++.+..+|...|++++|+.+++++++ ++|++| .+++.|
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~-~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nL 388 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFED-SNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKL 388 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCT-TSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccCh-hchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHH
Confidence 346777777777664321 11 2233 57888899999999999999999999986 456554 468899
Q ss_pred HHHHHhcCChhHHHHHHHHHHh
Q 038200 439 LNVYAVAGQWEDVARVRELMKK 460 (523)
Q Consensus 439 ~~~~~~~g~~~~A~~~~~~m~~ 460 (523)
+.+|..+|++++|..++++..+
T Consensus 389 a~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 389 GRLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhccCHHHHHHHHHHHHH
Confidence 9999999999999999998755
No 212
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.43 E-value=0.001 Score=63.27 Aligned_cols=93 Identities=6% Similarity=-0.003 Sum_probs=72.2
Q ss_pred HHHHHcCCChHHHHHHHHhCCCCCCC-CC---c-hHHHHHHHHHHHHhcCCHHHHHHHHHHHhh-----cCCCCh---hh
Q 038200 368 ANLYAGAELTEEAEEILRKMPEDNDN-MS---F-ESIMWVSLLSLCRFQGAVAMVERLAKSFVD-----MDPQDF---SR 434 (523)
Q Consensus 368 ~~~~~~~g~~~~A~~~~~~~~~~~~~-~~---~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~p~~~---~~ 434 (523)
+..+.+.|++++|++++++..+.... +. | ...+++.+..+|...|++++|+.+++++++ .+|++| ..
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 44456778999999988876543211 12 2 256788888899999999999999999886 455554 46
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHh
Q 038200 435 YQFLLNVYAVAGQWEDVARVRELMKK 460 (523)
Q Consensus 435 ~~~l~~~~~~~g~~~~A~~~~~~m~~ 460 (523)
++.|+.+|..+|++++|..++++..+
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 88999999999999999999998765
No 213
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.42 E-value=0.00024 Score=52.20 Aligned_cols=67 Identities=7% Similarity=-0.050 Sum_probs=39.2
Q ss_pred ChHHHHHHHHHHHcCCChHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCC
Q 038200 360 NFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDP 429 (523)
Q Consensus 360 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p 429 (523)
++..+..+..+|...|++++|++.|+++.+.. +.+...|..+..++...|++++|...+++++++.|
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~---p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~ 72 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETD---PDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAR 72 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS---TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhh
Confidence 44555566666666666666666666665421 22344555566666666666666666666665544
No 214
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.26 E-value=0.0011 Score=48.19 Aligned_cols=81 Identities=10% Similarity=-0.023 Sum_probs=58.7
Q ss_pred HHHHHHcCCChHHHHHHHHhCCCCCCCCCchHH-HHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhhHHHHHHHHHhc
Q 038200 367 MANLYAGAELTEEAEEILRKMPEDNDNMSFESI-MWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVA 445 (523)
Q Consensus 367 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 445 (523)
....+...|++++|.+.++++.+. .+.+.. .+..+..++...|++++|...++++++++|+++.++..
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~-------- 74 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQT---EPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR-------- 74 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHH---CSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH--------
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHH---CCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--------
Confidence 456677888889999888888753 233456 77777888888999999999999999999988776632
Q ss_pred CChhHHHHHHHHH
Q 038200 446 GQWEDVARVRELM 458 (523)
Q Consensus 446 g~~~~A~~~~~~m 458 (523)
+.+.++...+++.
T Consensus 75 ~~~~~a~~~~~~~ 87 (99)
T 2kc7_A 75 KMVMDILNFYNKD 87 (99)
T ss_dssp HHHHHHHHHHCCT
T ss_pred HHHHHHHHHHHHH
Confidence 3444555555443
No 215
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.25 E-value=0.015 Score=53.12 Aligned_cols=137 Identities=12% Similarity=0.077 Sum_probs=68.1
Q ss_pred CChHHHHHHHHHHH--hcC---ChHHHHHHHHHHHhCCCCCCCcCCC-HHHHHHHHHHHhh----c----CcHHHHHHHH
Q 038200 283 RNLVCWNAMILGHC--IHG---KPEEGIKLFTALVNGTVAGGSISPD-EITFIGVICACVR----A----ELLTEGRKYF 348 (523)
Q Consensus 283 ~~~~~~~~li~~~~--~~g---~~~~a~~~~~~m~~~~~~~~~~~p~-~~~~~~ll~~~~~----~----~~~~~a~~~~ 348 (523)
.+...|...+.+.. ..+ ...+|..+|++.++ ..|+ ...+..+..++.. . .........+
T Consensus 192 ~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~-------lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~ 264 (372)
T 3ly7_A 192 HRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQ-------SSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEI 264 (372)
T ss_dssp SSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHH-------HCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH-------hCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHH
Confidence 45666666665533 222 35788889999988 4576 3444444433321 0 0011111111
Q ss_pred HHhhHhcCCCCChHHHHHHHHHHHcCCChHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcC
Q 038200 349 RQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMD 428 (523)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 428 (523)
+........+.++.+|..+...+...|++++|...+++++.. .|+...|..+...+...|+.++|.+.++++..++
T Consensus 265 ~a~~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~L----n~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~ 340 (372)
T 3ly7_A 265 DNIVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDL----EMSWLNYVLLGKVYEMKGMNREAADAYLTAFNLR 340 (372)
T ss_dssp HHHHTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc----CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 111110022334555555555555456666666666665532 3444444444445555566666666666666666
Q ss_pred CC
Q 038200 429 PQ 430 (523)
Q Consensus 429 p~ 430 (523)
|.
T Consensus 341 P~ 342 (372)
T 3ly7_A 341 PG 342 (372)
T ss_dssp CS
T ss_pred CC
Confidence 63
No 216
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.10 E-value=0.003 Score=60.00 Aligned_cols=98 Identities=12% Similarity=-0.041 Sum_probs=74.4
Q ss_pred hcCcHHHHHHHHHHhhHhc--CCCC----ChHHHHHHHHHHHcCCChHHHHHHHHhCCCC-----CCCCCch-HHHHHHH
Q 038200 337 RAELLTEGRKYFRQMIDFY--KIKP----NFAHYWCMANLYAGAELTEEAEEILRKMPED-----NDNMSFE-SIMWVSL 404 (523)
Q Consensus 337 ~~~~~~~a~~~~~~~~~~~--~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~-~~~~~~l 404 (523)
..|++++|..++++..+.. -+.| ...+++.|..+|...|++++|+.+++++++. +. ..|+ ..+++.+
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~-~Hp~~a~~l~nL 388 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPV-YSLNVASMWLKL 388 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCS-SCHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCC-CChHHHHHHHHH
Confidence 4578899999888876531 1222 2467889999999999999999988876532 22 2444 6788899
Q ss_pred HHHHHhcCCHHHHHHHHHHHhh-----cCCCChhhH
Q 038200 405 LSLCRFQGAVAMVERLAKSFVD-----MDPQDFSRY 435 (523)
Q Consensus 405 ~~~~~~~g~~~~a~~~~~~~~~-----~~p~~~~~~ 435 (523)
...|..+|++++|+.+++++.+ ++|++|.+-
T Consensus 389 a~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~ 424 (433)
T 3qww_A 389 GRLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYIS 424 (433)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHH
T ss_pred HHHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHH
Confidence 9999999999999999999987 578777543
No 217
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=97.07 E-value=0.057 Score=40.66 Aligned_cols=142 Identities=11% Similarity=0.094 Sum_probs=106.6
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCCCcCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhHhcCCCCChHHHHHHHHHHHcC
Q 038200 295 HCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGA 374 (523)
Q Consensus 295 ~~~~g~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 374 (523)
+.-.|..++..++..+.... .+..-|+.+|.-....-+-+-..++++.+-+.|.+. .+
T Consensus 17 ~ildG~v~qGveii~k~~~s--------sni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDis--------------~C 74 (172)
T 1wy6_A 17 FLLDGYIDEGVKIVLEITKS--------STKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLD--------------KC 74 (172)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--------SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGG--------------GC
T ss_pred HHHhhhHHHHHHHHHHHcCC--------CCccccceeeeecchhhchhHHHHHHHHHhhhcCcH--------------hh
Confidence 45678899999999988774 355667777777777777788888888887754333 35
Q ss_pred CChHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChhHHHHH
Q 038200 375 ELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARV 454 (523)
Q Consensus 375 g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 454 (523)
|++......+-.+-. +...+...+.....+|+-+.-..++..+...++.+|+....++.+|.+.|+..+|.++
T Consensus 75 ~NlKrVi~C~~~~n~-------~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eL 147 (172)
T 1wy6_A 75 QNLKSVVECGVINNT-------LNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTL 147 (172)
T ss_dssp SCTHHHHHHHHHTTC-------CCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hcHHHHHHHHHHhcc-------hHHHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHH
Confidence 555555555555542 1234455667788899999999999997666666899999999999999999999999
Q ss_pred HHHHHhCCCcc
Q 038200 455 RELMKKRRMGR 465 (523)
Q Consensus 455 ~~~m~~~~~~~ 465 (523)
+.+.-++|++.
T Consensus 148 l~~AC~kG~kE 158 (172)
T 1wy6_A 148 LIEACKKGEKE 158 (172)
T ss_dssp HHHHHHTTCHH
T ss_pred HHHHHHhhhHH
Confidence 99999998753
No 218
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.05 E-value=0.0031 Score=60.04 Aligned_cols=105 Identities=11% Similarity=-0.043 Sum_probs=78.8
Q ss_pred HHHHHhhcCcHHHHHHHHHHhhHhc--CCCC----ChHHHHHHHHHHHcCCChHHHHHHHHhCCCC-----CCCCCch-H
Q 038200 331 VICACVRAELLTEGRKYFRQMIDFY--KIKP----NFAHYWCMANLYAGAELTEEAEEILRKMPED-----NDNMSFE-S 398 (523)
Q Consensus 331 ll~~~~~~~~~~~a~~~~~~~~~~~--~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~-~ 398 (523)
.+..+.+.|++++|..++++..+.. -+.| ...+++.|+.+|...|++++|+.+++++++. +. ..|+ .
T Consensus 293 ~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~-~Hp~~a 371 (429)
T 3qwp_A 293 KIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPG-SHPVRG 371 (429)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCS-SCHHHH
T ss_pred HHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCC-CChHHH
Confidence 3455667889999999998887531 1222 2567888999999999999999888876522 22 2343 6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhh-----cCCCChhhHH
Q 038200 399 IMWVSLLSLCRFQGAVAMVERLAKSFVD-----MDPQDFSRYQ 436 (523)
Q Consensus 399 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~p~~~~~~~ 436 (523)
.+++.+...|..+|++++|+.+++++.+ ++|++|.+-.
T Consensus 372 ~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~ 414 (429)
T 3qwp_A 372 VQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIED 414 (429)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHH
Confidence 7788899999999999999999999987 5788775544
No 219
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.86 E-value=0.03 Score=58.50 Aligned_cols=44 Identities=16% Similarity=0.163 Sum_probs=20.2
Q ss_pred hcCChHHHHHHHHhcCCCChHHHHHHHHHHHhcCChHHHHHHHHHH
Q 038200 266 KCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTAL 311 (523)
Q Consensus 266 ~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 311 (523)
..|+++.|.++.+.+. +...|..+...+.+.++++.|.+.|.++
T Consensus 664 ~~~~~~~A~~~~~~~~--~~~~W~~la~~al~~~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 664 KVGQLTLARDLLTDES--AEMKWRALGDASLQRFNFKLAIEAFTNA 707 (814)
T ss_dssp HHTCHHHHHHHHTTCC--CHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hcCCHHHHHHHHHhhC--cHhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 3444444444443332 2344444555555555555555554443
No 220
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=96.79 E-value=0.0094 Score=46.66 Aligned_cols=93 Identities=11% Similarity=-0.036 Sum_probs=71.7
Q ss_pred CcHHHHHHHHHHhhHhcCCCCChHHHHHHHHHHHcCC---ChHHHHHHHHhCCCCCCCCCc--hHHHHHHHHHHHHhcCC
Q 038200 339 ELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAE---LTEEAEEILRKMPEDNDNMSF--ESIMWVSLLSLCRFQGA 413 (523)
Q Consensus 339 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~ 413 (523)
.....+.+.|.+..+. + .++..+...+..++++++ +.++++.++++..+. ..| ....+..+.-++.+.|+
T Consensus 12 ~~l~~~~~~y~~e~~~-~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~---~~p~~~rd~lY~LAv~~~kl~~ 86 (152)
T 1pc2_A 12 EDLLKFEKKFQSEKAA-G-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPK---GSKEEQRDYVFYLAVGNYRLKE 86 (152)
T ss_dssp HHHHHHHHHHHHHHHT-T-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH---SCHHHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHHHcc-C-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc---CCccchHHHHHHHHHHHHHccC
Confidence 3445666777766663 3 378888888999999988 666999999998854 135 35566667778999999
Q ss_pred HHHHHHHHHHHhhcCCCChhhHH
Q 038200 414 VAMVERLAKSFVDMDPQDFSRYQ 436 (523)
Q Consensus 414 ~~~a~~~~~~~~~~~p~~~~~~~ 436 (523)
+++|.++++.+++.+|++..+..
T Consensus 87 Y~~A~~y~~~lL~ieP~n~QA~~ 109 (152)
T 1pc2_A 87 YEKALKYVRGLLQTEPQNNQAKE 109 (152)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHHHhcCCCCHHHHH
Confidence 99999999999999998875444
No 221
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.79 E-value=0.19 Score=52.38 Aligned_cols=151 Identities=9% Similarity=0.025 Sum_probs=93.5
Q ss_pred HccCCchHHHH-HHHHHHHhCCCCCchHHHHHHHHHHccCChHHHHHHHhhcCCCCcchHHHHHHHHHhcCCHHHHHHHH
Q 038200 98 AKTGCVERGGM-CHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELF 176 (523)
Q Consensus 98 ~~~~~~~~a~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~ 176 (523)
...+++++|.+ ++..+ ++......++..+.+.|..+.|.++.+.- ..-.......|+++.|.++.
T Consensus 610 ~~~~~~~~a~~~~l~~i------~~~~~~~~~~~~l~~~~~~~~a~~~~~~~--------~~~f~~~l~~~~~~~A~~~~ 675 (814)
T 3mkq_A 610 TLRGEIEEAIENVLPNV------EGKDSLTKIARFLEGQEYYEEALNISPDQ--------DQKFELALKVGQLTLARDLL 675 (814)
T ss_dssp HHTTCHHHHHHHTGGGC------CCHHHHHHHHHHHHHTTCHHHHHHHCCCH--------HHHHHHHHHHTCHHHHHHHH
T ss_pred HHhCCHHHHHHHHHhcC------CchHHHHHHHHHHHhCCChHHheecCCCc--------chheehhhhcCCHHHHHHHH
Confidence 34567777655 43111 11223366777777788888887766421 11233456678888888888
Q ss_pred hcCCCCChhHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHcCCCCchHH
Q 038200 177 DIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIIL 256 (523)
Q Consensus 177 ~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 256 (523)
+.+. +...|..+...+.+.++++.|.++|.++.+ |..+...+...|+.+....+-+.....|.
T Consensus 676 ~~~~--~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~~~~------ 738 (814)
T 3mkq_A 676 TDES--AEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAETTGK------ 738 (814)
T ss_dssp TTCC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHHTTC------
T ss_pred HhhC--cHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHHcCc------
Confidence 7764 567889999999999999999998887643 33444445556666665555555544431
Q ss_pred HHHHhhhhhhcCChHHHHHHHHh
Q 038200 257 DTALIDLYSKCQKVEVAQRVFDS 279 (523)
Q Consensus 257 ~~~l~~~~~~~~~~~~a~~~~~~ 279 (523)
++....+|.+.|++++|+++|.+
T Consensus 739 ~~~A~~~~~~~g~~~~a~~~~~~ 761 (814)
T 3mkq_A 739 FNLAFNAYWIAGDIQGAKDLLIK 761 (814)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHH
T ss_pred hHHHHHHHHHcCCHHHHHHHHHH
Confidence 22333445566777777666544
No 222
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=96.77 E-value=0.018 Score=52.50 Aligned_cols=133 Identities=13% Similarity=0.094 Sum_probs=91.6
Q ss_pred CCCHHHHHHHHHHHh--hc---CcHHHHHHHHHHhhHhcCCCCC-hHHHHHHHHHHH----cCCC----h---HHHHHHH
Q 038200 322 SPDEITFIGVICACV--RA---ELLTEGRKYFRQMIDFYKIKPN-FAHYWCMANLYA----GAEL----T---EEAEEIL 384 (523)
Q Consensus 322 ~p~~~~~~~ll~~~~--~~---~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~----~~g~----~---~~A~~~~ 384 (523)
+.+...|...+++.. .. ....+|..+|+++.+. .|+ ...|..+..+|. ..+. . ..+.+..
T Consensus 191 p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~l---DP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~ 267 (372)
T 3ly7_A 191 PHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQS---SPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNI 267 (372)
T ss_dssp CSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHH
Confidence 445666777766543 22 3468999999999984 454 445554444442 1111 1 1222222
Q ss_pred HhCCCCCCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 038200 385 RKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRR 462 (523)
Q Consensus 385 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 462 (523)
..+. ..+.++.++..+...+...|++++|...+++++.++| +...|..++.++.-.|++++|.+.+++..+.+
T Consensus 268 ~a~~----~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~-s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~ 340 (372)
T 3ly7_A 268 VTLP----ELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEM-SWLNYVLLGKVYEMKGMNREAADAYLTAFNLR 340 (372)
T ss_dssp HTCG----GGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred Hhcc----cCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 2222 1355677777777777778999999999999999997 56788899999999999999999999987764
No 223
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=96.72 E-value=0.0072 Score=44.47 Aligned_cols=80 Identities=11% Similarity=0.023 Sum_probs=57.8
Q ss_pred ChHHHHHHHHHHHcCCChHHHHHHHHhCCCCC---C-CCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhhH
Q 038200 360 NFAHYWCMANLYAGAELTEEAEEILRKMPEDN---D-NMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRY 435 (523)
Q Consensus 360 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 435 (523)
+..-...|...+.+.|+++.|...++.+.+.. . .-.+...++..+..++.+.|+++.|...++++.+++|+++.+.
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~ 83 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRAN 83 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHH
Confidence 33444566777777777777777777655321 0 1134567788888899999999999999999999999987765
Q ss_pred HHHH
Q 038200 436 QFLL 439 (523)
Q Consensus 436 ~~l~ 439 (523)
..+.
T Consensus 84 ~n~~ 87 (104)
T 2v5f_A 84 GNLK 87 (104)
T ss_dssp HHHH
T ss_pred hhHH
Confidence 5553
No 224
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=96.51 E-value=0.009 Score=52.21 Aligned_cols=87 Identities=8% Similarity=0.067 Sum_probs=62.2
Q ss_pred HHHHHHHHhCCCCCCCCCch---HHHHHHHHHHHHh-----cCCHHHHHHHHHHHhhcCCC-ChhhHHHHHHHHHhc-CC
Q 038200 378 EEAEEILRKMPEDNDNMSFE---SIMWVSLLSLCRF-----QGAVAMVERLAKSFVDMDPQ-DFSRYQFLLNVYAVA-GQ 447 (523)
Q Consensus 378 ~~A~~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~-----~g~~~~a~~~~~~~~~~~p~-~~~~~~~l~~~~~~~-g~ 447 (523)
..|...+++.++ +.|+ ...|..+...|.. .|+.++|++.|+++++++|+ +..++...+..++.. |+
T Consensus 180 ~~A~a~lerAle----LDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd 255 (301)
T 3u64_A 180 HAAVMMLERACD----LWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNN 255 (301)
T ss_dssp HHHHHHHHHHHH----HCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTC
T ss_pred HHHHHHHHHHHH----hCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCC
Confidence 556666666664 3444 4456666666666 48888888888888888886 488888888888774 88
Q ss_pred hhHHHHHHHHHHhCCCccCCc
Q 038200 448 WEDVARVRELMKKRRMGRMPG 468 (523)
Q Consensus 448 ~~~A~~~~~~m~~~~~~~~~~ 468 (523)
+++|.+.+++..+......|+
T Consensus 256 ~~~a~~~L~kAL~a~p~~~P~ 276 (301)
T 3u64_A 256 RAGFDEALDRALAIDPESVPH 276 (301)
T ss_dssp HHHHHHHHHHHHHCCGGGCSS
T ss_pred HHHHHHHHHHHHcCCCCCCCC
Confidence 888888888887765544354
No 225
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=96.36 E-value=0.098 Score=39.30 Aligned_cols=95 Identities=11% Similarity=-0.016 Sum_probs=70.7
Q ss_pred hcCcHHHHHHHHHHhhHhcCCCCChHHHHHHHHHHHcCCChHH---HHHHHHhCCCCCCCCCc--hHHHHHHHHHHHHhc
Q 038200 337 RAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEE---AEEILRKMPEDNDNMSF--ESIMWVSLLSLCRFQ 411 (523)
Q Consensus 337 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~---A~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~ 411 (523)
.......+.+-|...... +. ++..+--.+..++.++.+... ++.+++++... -.| .......+.-++.+.
T Consensus 13 ~~~~l~~~~~~y~~e~~~-~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~---~~p~~~Rd~lY~LAvg~ykl 87 (126)
T 1nzn_A 13 SVEDLLKFEKKFQSEKAA-GS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPK---GSKEEQRDYVFYLAVGNYRL 87 (126)
T ss_dssp HHHHHHHHHHHHHHHHHH-SC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTT---SCHHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHhcc-CC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc---CCcchHHHHHHHHHHHHHHh
Confidence 334455666667666553 33 777777788889999887776 89999998853 234 334455556689999
Q ss_pred CCHHHHHHHHHHHhhcCCCChhhHH
Q 038200 412 GAVAMVERLAKSFVDMDPQDFSRYQ 436 (523)
Q Consensus 412 g~~~~a~~~~~~~~~~~p~~~~~~~ 436 (523)
|++++|.++++.+++.+|++..+..
T Consensus 88 g~Y~~A~~~~~~lL~~eP~n~QA~~ 112 (126)
T 1nzn_A 88 KEYEKALKYVRGLLQTEPQNNQAKE 112 (126)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred hhHHHHHHHHHHHHHhCCCCHHHHH
Confidence 9999999999999999998876544
No 226
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=96.33 E-value=0.024 Score=40.53 Aligned_cols=68 Identities=7% Similarity=-0.133 Sum_probs=39.7
Q ss_pred CChHHHHHHHHHHHcCCC---hHHHHHHHHhCCCCCCCCCc-hHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCC
Q 038200 359 PNFAHYWCMANLYAGAEL---TEEAEEILRKMPEDNDNMSF-ESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQ 430 (523)
Q Consensus 359 ~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 430 (523)
.++..+..+..++...++ .++|..++++.++. .| +......+...+...|++++|...++++.+.+|.
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~----dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~ 75 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQL----EPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP 75 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH----CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 345555555555543333 56666666666642 33 3444445555666667777777777777666665
No 227
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=96.16 E-value=0.29 Score=39.30 Aligned_cols=102 Identities=10% Similarity=0.047 Sum_probs=53.6
Q ss_pred hhhcCChHHHHHHHHhcCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcCCCHHHHHHHHHHHhhcCcHHH
Q 038200 264 YSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTE 343 (523)
Q Consensus 264 ~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~ 343 (523)
....|+++.|.++.+.+ .+...|..|.......|+++-|.+.|.+..+ |..+.-.|...|+.+.
T Consensus 15 AL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D--------------~~~L~~Ly~~tg~~e~ 78 (177)
T 3mkq_B 15 ALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS--------------FDKLSFLYLVTGDVNK 78 (177)
T ss_dssp HHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC--------------HHHHHHHHHHHTCHHH
T ss_pred HHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC--------------HHHHHHHHHHhCCHHH
Confidence 34556666666665554 2455666666666666666666666665433 2233333444455554
Q ss_pred HHHHHHHhhHhcCCCCChHHHHHHHHHHHcCCChHHHHHHHHhCC
Q 038200 344 GRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMP 388 (523)
Q Consensus 344 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 388 (523)
-.++-+..... | -++.-...+.-.|+++++.+++.+.-
T Consensus 79 L~kla~iA~~~-g------~~n~af~~~l~lGdv~~~i~lL~~~~ 116 (177)
T 3mkq_B 79 LSKMQNIAQTR-E------DFGSMLLNTFYNNSTKERSSIFAEGG 116 (177)
T ss_dssp HHHHHHHHHHT-T------CHHHHHHHHHHHTCHHHHHHHHHHTT
T ss_pred HHHHHHHHHHC-c------cHHHHHHHHHHcCCHHHHHHHHHHCC
Confidence 44443333332 1 12333344455566666666666655
No 228
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=96.16 E-value=0.0037 Score=58.43 Aligned_cols=141 Identities=14% Similarity=0.061 Sum_probs=98.0
Q ss_pred CChhHHHHHHHHhhccCCchhHHHHhccCCCCCcccHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCcccHHHHHHHHH
Q 038200 19 NNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCA 98 (523)
Q Consensus 19 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~ 98 (523)
..|.+|+.|..+..+.+.+.+|++.|- ...|...|..++.+..+.|.+++-+..+.-.++.. -++..=+.|+-+|+
T Consensus 52 n~p~VWs~LgkAqL~~~~v~eAIdsyI--kA~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~--ke~~IDteLi~ayA 127 (624)
T 3lvg_A 52 NEPAVWSQLAKAQLQKGMVKEAIDSYI--KADDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALA 127 (624)
T ss_dssp CCCCCSSSHHHHTTTSSSCTTTTTSSC--CCSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTC--CSTTTTHHHHHHHH
T ss_pred CCccHHHHHHHHHHccCchHHHHHHHH--hCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh--cccccHHHHHHHHH
Confidence 467889999999999999999988774 34566778889999999999999998887666653 33344468888999
Q ss_pred ccCCchHHHHHHHHHHHhCCCCCchHHHHHHHHHHccCChHHHHHHHhhcC------------------------CCCcc
Q 038200 99 KTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMS------------------------PRDLI 154 (523)
Q Consensus 99 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~------------------------~~~~~ 154 (523)
+.++..+..+++. .||..-...+.+-|...|.++.|.-+|..+. ..++.
T Consensus 128 k~~rL~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~k 200 (624)
T 3lvg_A 128 KTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTR 200 (624)
T ss_dssp TSCSSSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSC
T ss_pred hhCcHHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChh
Confidence 9888766544321 3455555556666666666666666665543 13566
Q ss_pred hHHHHHHHHHhcCCHH
Q 038200 155 SWNSIVSGHVRSGDMS 170 (523)
Q Consensus 155 ~~~~ll~~~~~~~~~~ 170 (523)
+|-.+-.+|...+.+.
T Consensus 201 tWKeV~~ACvd~~Efr 216 (624)
T 3lvg_A 201 TWKEVCFACVDGKEFR 216 (624)
T ss_dssp SHHHHTHHHHHSCTTT
T ss_pred HHHHHHHHHhCchHHH
Confidence 7777776666544433
No 229
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=96.12 E-value=1.2 Score=44.11 Aligned_cols=118 Identities=12% Similarity=0.054 Sum_probs=71.7
Q ss_pred CChHHHHHHHHHHHhCCCCCCCcCCCHH--HHHHHHHHHhhcCcHHHHHHHHHHhhHhcCCCCChHHHHHHHHHHHcCCC
Q 038200 299 GKPEEGIKLFTALVNGTVAGGSISPDEI--TFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAEL 376 (523)
Q Consensus 299 g~~~~a~~~~~~m~~~~~~~~~~~p~~~--~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 376 (523)
.+.+.|..+|........ ..+... ....+.......+...++...+...... ..+.....-.+....+.|+
T Consensus 228 ~d~~~A~~~~~~~~~~~~----~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~e~~~r~Alr~~d 300 (618)
T 1qsa_A 228 QDAENARLMIPSLAQAQQ----LNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR---SQSTSLIERRVRMALGTGD 300 (618)
T ss_dssp HCHHHHHHHHHHHHHHTT----CCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT---CCCHHHHHHHHHHHHHHTC
T ss_pred cCHHHHHHHHHhhhhccC----CCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcccc---CCChHHHHHHHHHHHHCCC
Confidence 377899999988865430 222221 2233333444455355666666665442 2343344445555567799
Q ss_pred hHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 038200 377 TEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVD 426 (523)
Q Consensus 377 ~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 426 (523)
++.|...|+.|... .........=+..+....|+.++|..+|+.+.+
T Consensus 301 ~~~a~~~~~~l~~~---~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 301 RRGLNTWLARLPME---AKEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHHHHHHSCTT---GGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcccc---ccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 99999999999842 111233233344567788999999999999875
No 230
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=96.09 E-value=0.42 Score=38.38 Aligned_cols=128 Identities=9% Similarity=0.023 Sum_probs=90.5
Q ss_pred HhccccHHHHHHHHHHHHHcCCCCchHHHHHHhhhhhhcCChHHHHHHHHhcCCCChHHHHHHHHHHHhcCChHHHHHHH
Q 038200 229 CGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLF 308 (523)
Q Consensus 229 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 308 (523)
....|+++.|.++.+.+ .+...|..|.+.....|+++-|++.|.+... +..+.-.|...|+.+.-..+-
T Consensus 15 AL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D-----~~~L~~Ly~~tg~~e~L~kla 83 (177)
T 3mkq_B 15 ALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS-----FDKLSFLYLVTGDVNKLSKMQ 83 (177)
T ss_dssp HHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC-----HHHHHHHHHHHTCHHHHHHHH
T ss_pred HHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC-----HHHHHHHHHHhCCHHHHHHHH
Confidence 45678888888887655 3678899999999999999999999998875 445555566778887777776
Q ss_pred HHHHhCCCCCCCcCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhHhcCCCCChHHHHHHHHHHHcCCChHHHHHHHHhCC
Q 038200 309 TALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMP 388 (523)
Q Consensus 309 ~~m~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 388 (523)
+.....| -++.....+...|+++++.++|.+... -|... ......|..+.|.++.+++-
T Consensus 84 ~iA~~~g-----------~~n~af~~~l~lGdv~~~i~lL~~~~r----~~eA~------~~A~t~g~~~~a~~~~~~~~ 142 (177)
T 3mkq_B 84 NIAQTRE-----------DFGSMLLNTFYNNSTKERSSIFAEGGS----LPLAY------AVAKANGDEAAASAFLEQAE 142 (177)
T ss_dssp HHHHHTT-----------CHHHHHHHHHHHTCHHHHHHHHHHTTC----HHHHH------HHHHHTTCHHHHHHHHHHTT
T ss_pred HHHHHCc-----------cHHHHHHHHHHcCCHHHHHHHHHHCCC----hHHHH------HHHHHcCcHHHHHHHHHHhC
Confidence 6666655 345556667778999999999877643 12111 11223566778888877764
No 231
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=95.96 E-value=0.09 Score=45.99 Aligned_cols=123 Identities=14% Similarity=0.147 Sum_probs=86.2
Q ss_pred cCCChHHHHHHHHhCCCCCCCCCchHHHHHHHHHH-HHhc--CC------HHHHHHHHHHHhhcCCC--ChhhHHHHHHH
Q 038200 373 GAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSL-CRFQ--GA------VAMVERLAKSFVDMDPQ--DFSRYQFLLNV 441 (523)
Q Consensus 373 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~--g~------~~~a~~~~~~~~~~~p~--~~~~~~~l~~~ 441 (523)
+.++..+-.+.+.++.. -.+....|..++.+ +... |+ ...|...++++++++|+ +..+|..|+..
T Consensus 133 ~~~~~~~~~~~l~~~~~----~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleLDP~~~~GsA~~~LG~l 208 (301)
T 3u64_A 133 FSGDEQRLHKVLSRCTR----VDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDLWPSYQEGAVWNVLTKF 208 (301)
T ss_dssp TSSCHHHHHHHHTTCCG----GGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHH
T ss_pred HhcchhhHHHHHHHcCc----cccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHhCCCcccCHHHHHHHHH
Confidence 34444444455555542 24556777777764 3332 32 78899999999999998 67899999999
Q ss_pred HHhc-----CChhHHHHHHHHHHhCCCccCCceeEEEeCCeEEEEecCC-CCchHHHHHHHHHHhcccC
Q 038200 442 YAVA-----GQWEDVARVRELMKKRRMGRMPGCRLVDLKEVVEKLKVGH-FWRGGMKEEVNKMMECRQS 504 (523)
Q Consensus 442 ~~~~-----g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~ 504 (523)
|.+. |+.++|.+.|++..+.+.....+ .+.....|+... .+..++.+.|++.+..+|.
T Consensus 209 Y~~vPp~~gGd~ekA~~~ferAL~LnP~~~id-----~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 209 YAAAPESFGGGMEKAHTAFEHLTRYCSAHDPD-----HHITYADALCIPLNNRAGFDEALDRALAIDPE 272 (301)
T ss_dssp HHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSH-----HHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGG
T ss_pred HHhCCCccCCCHHHHHHHHHHHHHhCCCCCch-----HHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCC
Confidence 9994 99999999999998865432232 111223333332 6788899999999998887
No 232
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=95.92 E-value=0.045 Score=40.08 Aligned_cols=65 Identities=8% Similarity=-0.032 Sum_probs=54.8
Q ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcC-------CCChhhHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 038200 397 ESIMWVSLLSLCRFQGAVAMVERLAKSFVDMD-------PQDFSRYQFLLNVYAVAGQWEDVARVRELMKKR 461 (523)
Q Consensus 397 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 461 (523)
+......+...+...|+++.|...++.+.+.. +..+.++..|+.+|.+.|++++|...+++..+.
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l 75 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 34455677888999999999999999998742 345678999999999999999999999998764
No 233
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=95.92 E-value=0.02 Score=44.85 Aligned_cols=81 Identities=6% Similarity=-0.089 Sum_probs=64.4
Q ss_pred HHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHhcC---CHHHHHHHHHHHhhcC-C-CChhhHHHHHHHHHhcCChhHHH
Q 038200 378 EEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQG---AVAMVERLAKSFVDMD-P-QDFSRYQFLLNVYAVAGQWEDVA 452 (523)
Q Consensus 378 ~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~~-p-~~~~~~~~l~~~~~~~g~~~~A~ 452 (523)
..+.+.|.+....+ .++..+...+..++.+.+ +.+++..+++.+.+.+ | +....+..|+.+|.+.|++++|.
T Consensus 15 ~~~~~~y~~e~~~~---~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~ 91 (152)
T 1pc2_A 15 LKFEKKFQSEKAAG---SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKAL 91 (152)
T ss_dssp HHHHHHHHHHHHTT---CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHHHccC---CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHH
Confidence 44555555554322 367777778888888887 6779999999999988 6 46788999999999999999999
Q ss_pred HHHHHHHhC
Q 038200 453 RVRELMKKR 461 (523)
Q Consensus 453 ~~~~~m~~~ 461 (523)
++++++.+.
T Consensus 92 ~y~~~lL~i 100 (152)
T 1pc2_A 92 KYVRGLLQT 100 (152)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhc
Confidence 999999664
No 234
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=95.83 E-value=0.055 Score=41.74 Aligned_cols=112 Identities=11% Similarity=0.157 Sum_probs=77.4
Q ss_pred CHHHHHHHHHHHhhcCcH------HHHHHHHHHhhHhcCCCCChHH-HHHHHH------HHHcCCChHHHHHHHHhCCCC
Q 038200 324 DEITFIGVICACVRAELL------TEGRKYFRQMIDFYKIKPNFAH-YWCMAN------LYAGAELTEEAEEILRKMPED 390 (523)
Q Consensus 324 ~~~~~~~ll~~~~~~~~~------~~a~~~~~~~~~~~~~~~~~~~-~~~l~~------~~~~~g~~~~A~~~~~~~~~~ 390 (523)
|..+|-..+....+.|+. +..+++|+++.. .++|+... |...|. .+...++.++|.++|+.++..
T Consensus 12 ~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia--~~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~ 89 (161)
T 4h7y_A 12 NPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIE--ALPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARAN 89 (161)
T ss_dssp SHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHH--HSCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHH--cCCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 455666666666666666 777788888887 57775311 111111 123447899999999988654
Q ss_pred CCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhhHHHHHH
Q 038200 391 NDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLN 440 (523)
Q Consensus 391 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 440 (523)
...+ +.+|......-.++|+...|..++.+++.+.|.+...+...+.
T Consensus 90 hKkF---AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~le~a~~ 136 (161)
T 4h7y_A 90 CKKF---AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEMLEIALR 136 (161)
T ss_dssp CTTB---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHHHHHHHH
T ss_pred hHHH---HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHHHHHHHH
Confidence 3333 7788888888889999999999999999999977665555443
No 235
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=95.82 E-value=1.3 Score=45.76 Aligned_cols=25 Identities=4% Similarity=-0.156 Sum_probs=17.9
Q ss_pred HHHHHHHHHccCCchHHHHHHHHHH
Q 038200 90 FVSLFGSCAKTGCVERGGMCHGLAL 114 (523)
Q Consensus 90 ~~~ll~~~~~~~~~~~a~~~~~~~~ 114 (523)
|..++.+..+.++.+.+.++|..+.
T Consensus 233 y~~a~~~ai~LnD~~li~~if~~l~ 257 (963)
T 4ady_A 233 YLTLNKVVVNLNDAGLALQLFKKLK 257 (963)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 5666666677777777777777765
No 236
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=95.69 E-value=0.089 Score=53.21 Aligned_cols=54 Identities=9% Similarity=0.108 Sum_probs=50.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHH
Q 038200 405 LSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELM 458 (523)
Q Consensus 405 ~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 458 (523)
...|...|+++.|..+.+++...-|.+..+|..|+.+|...|+|+.|+-.++.+
T Consensus 344 a~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 344 TNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 445778899999999999999999999999999999999999999999998876
No 237
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=94.91 E-value=0.88 Score=34.38 Aligned_cols=82 Identities=11% Similarity=0.006 Sum_probs=43.9
Q ss_pred hcCChHHHHHHHHhcCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcCCCHHHHHHHHHHHhhcCcHHHHH
Q 038200 266 KCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGR 345 (523)
Q Consensus 266 ~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~ 345 (523)
.+|++......+-.+.. +.......+..+...|+-+.-.+++..+... .+|++.....+..+|.+.|+..++.
T Consensus 73 ~C~NlKrVi~C~~~~n~-~se~vd~ALd~lv~~~KkDqLdki~~~~l~n------~~~~~~~l~kia~Ay~Klg~~r~a~ 145 (172)
T 1wy6_A 73 KCQNLKSVVECGVINNT-LNEHVNKALDILVIQGKRDKLEEIGREILKN------NEVSASILVAIANALRRVGDERDAT 145 (172)
T ss_dssp GCSCTHHHHHHHHHTTC-CCHHHHHHHHHHHHTTCHHHHHHHHHHHC--------CCSCHHHHHHHHHHHHHTTCHHHHH
T ss_pred hhhcHHHHHHHHHHhcc-hHHHHHHHHHHHHHhccHhHHHHHHHHHhcc------CCCChHHHHHHHHHHHHhcchhhHH
Confidence 34444444444444433 2233344455556666666666666664332 3455666666666666666666666
Q ss_pred HHHHHhhHh
Q 038200 346 KYFRQMIDF 354 (523)
Q Consensus 346 ~~~~~~~~~ 354 (523)
+++.++-+.
T Consensus 146 eLl~~AC~k 154 (172)
T 1wy6_A 146 TLLIEACKK 154 (172)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHh
Confidence 666666554
No 238
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=94.31 E-value=0.27 Score=37.95 Aligned_cols=100 Identities=5% Similarity=-0.119 Sum_probs=71.1
Q ss_pred ChHHHHHHHHHHHcCCCh------HHHHHHHHhCCCCCCCCCchH--------HHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 038200 360 NFAHYWCMANLYAGAELT------EEAEEILRKMPEDNDNMSFES--------IMWVSLLSLCRFQGAVAMVERLAKSFV 425 (523)
Q Consensus 360 ~~~~~~~l~~~~~~~g~~------~~A~~~~~~~~~~~~~~~~~~--------~~~~~l~~~~~~~g~~~~a~~~~~~~~ 425 (523)
|..+|...+..+-+.|+. ++..++|++.... ++|+. ..|...+ .+...+|.++|.++|+.++
T Consensus 12 ~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~---~Pp~k~~~wrrYI~LWIrYA-~~~ei~D~d~aR~vy~~a~ 87 (161)
T 4h7y_A 12 NPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA---LPPDKYGQNESFARIQVRFA-ELKAIQEPDDARDYFQMAR 87 (161)
T ss_dssp SHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH---SCGGGGTTCHHHHHHHHHHH-HHHHHHCGGGCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc---CCccccccHHHHHHHHHHHH-HHHHhcCHHHHHHHHHHHH
Confidence 566777777777766777 7777777776643 45541 2222222 2344589999999999998
Q ss_pred hcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 038200 426 DMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRM 463 (523)
Q Consensus 426 ~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 463 (523)
++...=..+|...+..-.++|+...|.+++.+....+.
T Consensus 88 ~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~ 125 (161)
T 4h7y_A 88 ANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGA 125 (161)
T ss_dssp HHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCC
Confidence 87444466777778888899999999999999877553
No 239
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.53 E-value=1.4 Score=41.86 Aligned_cols=187 Identities=11% Similarity=0.071 Sum_probs=120.6
Q ss_pred CChHHHHHHHHhcCC---------CChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcCCCHHHHHHHHHHHh--
Q 038200 268 QKVEVAQRVFDSMAD---------RNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACV-- 336 (523)
Q Consensus 268 ~~~~~a~~~~~~~~~---------~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~ll~~~~-- 336 (523)
|+++.|++.+-.+.+ ........++..|...|+++...+.+.-+.... -.. ......+++.+.
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr-----~ql-k~ai~~~V~~~~~~ 103 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKH-----GQL-KLSIQYMIQKVMEY 103 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTT-----TTS-HHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHh-----hhh-HHHHHHHHHHHHHH
Confidence 678888887755532 234578889999999999999999998887765 222 222334443332
Q ss_pred --hcCc--HHHHHHHHHHhhHhc--CCCC---ChHHHHHHHHHHHcCCChHHHHHHHHhCCCCCCCCCch---HHHHHHH
Q 038200 337 --RAEL--LTEGRKYFRQMIDFY--KIKP---NFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFE---SIMWVSL 404 (523)
Q Consensus 337 --~~~~--~~~a~~~~~~~~~~~--~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~---~~~~~~l 404 (523)
.... .+.-..+.+.+.... .+-. .......|...|...|++.+|.+++.++.....+.... ...+...
T Consensus 104 l~~~~~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q 183 (445)
T 4b4t_P 104 LKSSKSLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQ 183 (445)
T ss_dssp HHHHCTTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHH
T ss_pred HhcCCchhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 2222 222222332221110 1111 22345678899999999999999999876332222222 3455666
Q ss_pred HHHHHhcCCHHHHHHHHHHHhh---cCCCC----hhhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 038200 405 LSLCRFQGAVAMVERLAKSFVD---MDPQD----FSRYQFLLNVYAVAGQWEDVARVRELMKK 460 (523)
Q Consensus 405 ~~~~~~~g~~~~a~~~~~~~~~---~~p~~----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 460 (523)
+..|...+++..|..+++++.. ..+.+ ...+...+..+...++|.+|-+.|.+..+
T Consensus 184 ~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~ 246 (445)
T 4b4t_P 184 MELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQ 246 (445)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 7789999999999999998753 22222 23667788888999999999888877754
No 240
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=93.08 E-value=0.27 Score=45.90 Aligned_cols=68 Identities=12% Similarity=0.045 Sum_probs=58.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHh-----CCCccCCc
Q 038200 401 WVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKK-----RRMGRMPG 468 (523)
Q Consensus 401 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~-----~~~~~~~~ 468 (523)
...++.++...|+++++...++.+...+|-+...+..|+.+|.+.|+..+|++.|+++.+ .|+.|.|.
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~ 246 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPT 246 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHH
Confidence 345566778899999999999999999999888999999999999999999999998754 47777665
No 241
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=92.90 E-value=5 Score=35.98 Aligned_cols=25 Identities=20% Similarity=0.179 Sum_probs=12.4
Q ss_pred CcchHHHHHHHHHhcCCHHHHHHHH
Q 038200 152 DLISWNSIVSGHVRSGDMSAAHELF 176 (523)
Q Consensus 152 ~~~~~~~ll~~~~~~~~~~~a~~~~ 176 (523)
|+.....+...|.+.+++.+|+..|
T Consensus 135 dp~LH~~ig~~~~~e~~~~~Ae~H~ 159 (336)
T 3lpz_A 135 DPELHHVVGTLYVEEGEFEAAEKHL 159 (336)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CHHHHHHHHHHHHccCCHHHHHHHH
Confidence 3444444444555555555555554
No 242
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=91.69 E-value=14 Score=38.41 Aligned_cols=251 Identities=9% Similarity=-0.047 Sum_probs=138.7
Q ss_pred HHHhcCCHHHHHHHHhcCCC----CCh--hHHHHHHHHHHhcCCchHHHHHHHHHHHCCC-------CCCHHHHHHHHHH
Q 038200 162 GHVRSGDMSAAHELFDIMPE----RNV--VSWNIMISGYSKSGNPGCSLKLFREMMKSGF-------RGNDKTMASVLTA 228 (523)
Q Consensus 162 ~~~~~~~~~~a~~~~~~~~~----~~~--~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~-------~p~~~~~~~ll~~ 228 (523)
+....|+.++++.+++.... .+. ..-..+.-+....|..+++..++...+...- .+....-..+.-+
T Consensus 383 GlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLG 462 (963)
T 4ady_A 383 GVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIG 462 (963)
T ss_dssp HHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHH
T ss_pred hhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHH
Confidence 45678888899999988764 222 2233344455666776778887777665321 0111112222223
Q ss_pred H--hccccHHHHHHHHHHHHHcCCCCch--HHHHHHhhhhhhcCChHHHHHHHHhcCC-CChH--HHHHHHHHHHhcCCh
Q 038200 229 C--GRSARFNEGRSVHGYTVRTSLKPNI--ILDTALIDLYSKCQKVEVAQRVFDSMAD-RNLV--CWNAMILGHCIHGKP 301 (523)
Q Consensus 229 ~--~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~--~~~~li~~~~~~g~~ 301 (523)
+ .-.++ +++.+.+..+....- +.. ..--+|...+.-.|+-+....++..+.+ .+.. -...+.-++...|+.
T Consensus 463 la~~GS~~-eev~e~L~~~L~dd~-~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~~ 540 (963)
T 4ady_A 463 LAAMGSAN-IEVYEALKEVLYNDS-ATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQHGNITRGLAVGLALINYGRQ 540 (963)
T ss_dssp HHSTTCCC-HHHHHHHHHHHHTCC-HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCG
T ss_pred HHhcCCCC-HHHHHHHHHHHhcCC-HHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCCh
Confidence 3 33343 345555555554321 111 1222344455667777777777665432 2222 233344455577888
Q ss_pred HHHHHHHHHHHhCCCCCCCcCCCHHH--HHHHHHHHhhcCcHHHHHHHHHHhhHhcCCCCChHHHHHHHHHHHcCCChHH
Q 038200 302 EEGIKLFTALVNGTVAGGSISPDEIT--FIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEE 379 (523)
Q Consensus 302 ~~a~~~~~~m~~~~~~~~~~~p~~~~--~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 379 (523)
+.+..+.+.+.... .|.... ...+..+|+..|+.....+++..+.+ ....++.....+.-++...|+.+.
T Consensus 541 e~~~~li~~L~~~~------dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~--d~~d~VRraAViaLGlI~~g~~e~ 612 (963)
T 4ady_A 541 ELADDLITKMLASD------ESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVS--DSNDDVRRAAVIALGFVLLRDYTT 612 (963)
T ss_dssp GGGHHHHHHHHHCS------CHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH--CSCHHHHHHHHHHHHHHTSSSCSS
T ss_pred HHHHHHHHHHHhCC------CHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhcc--CCcHHHHHHHHHHHHhhccCCHHH
Confidence 88888888887632 232221 22344577888998888889998887 333344444444445555777777
Q ss_pred HHHHHHhCCCCCCCCCchHHHHHHHHHHHHhcCCH-HHHHHHHHHHh
Q 038200 380 AEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAV-AMVERLAKSFV 425 (523)
Q Consensus 380 A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~a~~~~~~~~ 425 (523)
+.++++.+.+. ..|...--..+.-+....|+. ..+...+..+.
T Consensus 613 v~rlv~~L~~~---~d~~VR~gAalALGli~aGn~~~~aid~L~~L~ 656 (963)
T 4ady_A 613 VPRIVQLLSKS---HNAHVRCGTAFALGIACAGKGLQSAIDVLDPLT 656 (963)
T ss_dssp HHHHTTTGGGC---SCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHhc---CCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHc
Confidence 77777766642 345544433444444444443 56666777665
No 243
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=91.56 E-value=1.2 Score=31.52 Aligned_cols=64 Identities=17% Similarity=0.136 Sum_probs=49.9
Q ss_pred ChHHHHHHHHHHHhCCCCCCCcCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhHhcCCCCChHHHHHHHHH
Q 038200 300 KPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANL 370 (523)
Q Consensus 300 ~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 370 (523)
+.-+..+-++.+.... +.|++......+++|.+.+++..|.++|+.++.+ ..+...+|..+++-
T Consensus 25 D~~e~rrglN~l~~~D-----lVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K--~~~~~~iY~~~lqE 88 (109)
T 1v54_E 25 DAWELRKGMNTLVGYD-----LVPEPKIIDAALRACRRLNDFASAVRILEVVKDK--AGPHKEIYPYVIQE 88 (109)
T ss_dssp CHHHHHHHHHHHTTSS-----BCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TTTCTTHHHHHHHH
T ss_pred cHHHHHHHHHHHhccc-----cCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--hcCchhhHHHHHHH
Confidence 4556677777777777 8899999999999999999999999999999885 33344567666653
No 244
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=91.38 E-value=1.4 Score=33.05 Aligned_cols=87 Identities=13% Similarity=-0.011 Sum_probs=61.7
Q ss_pred CChHHHHHHHHHHHhCCCCCCCcCCCHHHHHHHHHHHhhcCcHHH---HHHHHHHhhHhcCCCC--ChHHHHHHHHHHHc
Q 038200 299 GKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTE---GRKYFRQMIDFYKIKP--NFAHYWCMANLYAG 373 (523)
Q Consensus 299 g~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~---a~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~ 373 (523)
.....+.+.|.+....+ .|+..+-..+..++.++..... ++.+++.+.+. -.| .....-.|.-++.+
T Consensus 15 ~~l~~~~~~y~~e~~~~------~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~--~~p~~~Rd~lY~LAvg~yk 86 (126)
T 1nzn_A 15 EDLLKFEKKFQSEKAAG------SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPK--GSKEEQRDYVFYLAVGNYR 86 (126)
T ss_dssp HHHHHHHHHHHHHHHHS------CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTT--SCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccC------CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHH
Confidence 34455566666665555 3777777777788888776655 88888888773 223 34555667788899
Q ss_pred CCChHHHHHHHHhCCCCCCCCCch
Q 038200 374 AELTEEAEEILRKMPEDNDNMSFE 397 (523)
Q Consensus 374 ~g~~~~A~~~~~~~~~~~~~~~~~ 397 (523)
.|++++|.+.++.+++ +.|+
T Consensus 87 lg~Y~~A~~~~~~lL~----~eP~ 106 (126)
T 1nzn_A 87 LKEYEKALKYVRGLLQ----TEPQ 106 (126)
T ss_dssp TTCHHHHHHHHHHHHH----HCTT
T ss_pred hhhHHHHHHHHHHHHH----hCCC
Confidence 9999999999999886 4664
No 245
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=91.24 E-value=2.8 Score=29.56 Aligned_cols=59 Identities=12% Similarity=0.154 Sum_probs=41.7
Q ss_pred HHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHHHHH
Q 038200 162 GHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMA 223 (523)
Q Consensus 162 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~ 223 (523)
.+...|++++|..+.+....||...|.+|.. .+.|-.+++...+.++...| .|....|.
T Consensus 49 SLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~sg-~p~~q~Fa 107 (116)
T 2p58_C 49 SLMNRGDYASALQQGNKLAYPDLEPWLALCE--YRLGLGSALESRLNRLARSQ-DPRIQTFV 107 (116)
T ss_dssp HHHHTTCHHHHHHHHTTSCCGGGHHHHHHHH--HHHTCHHHHHHHHHHHTTCC-CHHHHHHH
T ss_pred HHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHhCC-CHHHHHHH
Confidence 4667788888888888888888888876643 46777777777777776665 44444443
No 246
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=91.22 E-value=7.7 Score=34.50 Aligned_cols=46 Identities=13% Similarity=0.105 Sum_probs=20.0
Q ss_pred CcchHHHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHhc
Q 038200 152 DLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKS 197 (523)
Q Consensus 152 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~ 197 (523)
|+..+..+...|.+.|++.+|+..|-.-...+...+..++.-+...
T Consensus 133 dp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~~w~~~ 178 (312)
T 2wpv_A 133 DPYLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKYVDLLWDWLCQ 178 (312)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHHHHHHHHHHHh
Confidence 3344444445555555555555544422212344444444444433
No 247
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=91.10 E-value=2.6 Score=29.65 Aligned_cols=60 Identities=13% Similarity=0.028 Sum_probs=44.6
Q ss_pred HHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHHHHH
Q 038200 161 SGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMA 223 (523)
Q Consensus 161 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~ 223 (523)
..+...|++++|..+.+....||...|.+|. -.+.|-.+++...+.++...| .|....|.
T Consensus 47 sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALc--e~rlGl~s~le~rL~~la~sg-~p~~q~Fa 106 (115)
T 2uwj_G 47 SSLANQGRYQEALAFAHGNPWPALEPWFALC--EWHLGLGAALDRRLAGLGGSS-DPALADFA 106 (115)
T ss_dssp HHHHHTTCHHHHHGGGTTCCCGGGHHHHHHH--HHHTTCHHHHHHHHHHHHTCS-SHHHHHHH
T ss_pred HHHHcchhHHHHHHhcCCCCCchHHHHHHHH--HHhcccHHHHHHHHHHHHhCC-CHHHHHHH
Confidence 3466788888888888888888888887764 347788888888887777776 45544443
No 248
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=90.88 E-value=0.95 Score=35.71 Aligned_cols=56 Identities=11% Similarity=0.009 Sum_probs=27.8
Q ss_pred HHHHhhcCcHHHHHHHHHHhhHhcCCCCCh-------HHHHHHHHHHHcCCChHHHHHHHHhC
Q 038200 332 ICACVRAELLTEGRKYFRQMIDFYKIKPNF-------AHYWCMANLYAGAELTEEAEEILRKM 387 (523)
Q Consensus 332 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~ 387 (523)
+..+...+.++.|+-+.+.+....+..|+. .++..+.+++...|++..|...|++.
T Consensus 27 ik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qA 89 (167)
T 3ffl_A 27 VRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMA 89 (167)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 344455555555555555443321222221 23444555666666666666666553
No 249
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=90.71 E-value=4.2 Score=31.11 Aligned_cols=76 Identities=12% Similarity=0.043 Sum_probs=55.2
Q ss_pred CCChHHHHHHHHHHHcCCChH---HHHHHHHhCCCCCCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhh
Q 038200 358 KPNFAHYWCMANLYAGAELTE---EAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSR 434 (523)
Q Consensus 358 ~~~~~~~~~l~~~~~~~g~~~---~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 434 (523)
.|+..+--.+..++.++.+.+ +++.+++++.... ..-.......+.-++.+.|++++|.++.+.+++.+|++..+
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~--~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA 113 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEA--ESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQV 113 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHC--CSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC--ccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHH
Confidence 567777777788888877654 5777888877421 11233444555668999999999999999999999988654
Q ss_pred H
Q 038200 435 Y 435 (523)
Q Consensus 435 ~ 435 (523)
.
T Consensus 114 ~ 114 (144)
T 1y8m_A 114 G 114 (144)
T ss_dssp H
T ss_pred H
Confidence 3
No 250
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=90.71 E-value=11 Score=35.73 Aligned_cols=186 Identities=9% Similarity=0.089 Sum_probs=117.4
Q ss_pred cCCchHHHHHHHHHHHC-----CCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHcCCCCchHHHHHHh----hhhhhc
Q 038200 197 SGNPGCSLKLFREMMKS-----GFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALI----DLYSKC 267 (523)
Q Consensus 197 ~~~~~~a~~~~~~m~~~-----~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~----~~~~~~ 267 (523)
.|+++.|++.+-.+.+. +..........++..|...++++...+.+..+.+..-.. ......++ ......
T Consensus 29 ~~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~ql-k~ai~~~V~~~~~~l~~~ 107 (445)
T 4b4t_P 29 QNDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQL-KLSIQYMIQKVMEYLKSS 107 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTS-HHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhh-HHHHHHHHHHHHHHHhcC
Confidence 36788998888776642 234456678888999999999999888777666542222 22222233 333233
Q ss_pred CChH--HHHHHHHhcCC---C-------ChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcCCCH-----HHHHH
Q 038200 268 QKVE--VAQRVFDSMAD---R-------NLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDE-----ITFIG 330 (523)
Q Consensus 268 ~~~~--~a~~~~~~~~~---~-------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~p~~-----~~~~~ 330 (523)
...+ .-..+.+.... . .......|...|...|++.+|..++..+...- ...+. ..+..
T Consensus 108 ~~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et-----~~~~~~~~kve~~l~ 182 (445)
T 4b4t_P 108 KSLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVET-----YGSMEMSEKIQFILE 182 (445)
T ss_dssp CTTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-----CSSSCHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH-----HhcccHHHHHHHHHH
Confidence 3322 22333333322 1 11234567788888999999999999888765 22222 34556
Q ss_pred HHHHHhhcCcHHHHHHHHHHhhHh-cCCCCC----hHHHHHHHHHHHcCCChHHHHHHHHhCC
Q 038200 331 VICACVRAELLTEGRKYFRQMIDF-YKIKPN----FAHYWCMANLYAGAELTEEAEEILRKMP 388 (523)
Q Consensus 331 ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 388 (523)
.++.|...+++..|..+++++... +...++ ...|...+..+...+++.+|.+.|.++.
T Consensus 183 q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~ 245 (445)
T 4b4t_P 183 QMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIY 245 (445)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 667788889999998888887532 122222 2455667777778888888888777766
No 251
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=90.60 E-value=1.6 Score=34.37 Aligned_cols=61 Identities=7% Similarity=-0.031 Sum_probs=40.7
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcCCC-------HHHHHHHHHHHhhcCcHHHHHHHHHHhhHh
Q 038200 290 AMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPD-------EITFIGVICACVRAELLTEGRKYFRQMIDF 354 (523)
Q Consensus 290 ~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~p~-------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 354 (523)
.-+..+...|.++.|.-+...+..... ..|+ ..++..+..++...+++..|...|++..+.
T Consensus 25 dqik~L~d~~LY~sA~~La~lLlSl~~----~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~ 92 (167)
T 3ffl_A 25 DHVRDMAAAGLHSNVRLLSSLLLTLSN----NNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQ 92 (167)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHH----HSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHhhc----CCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHH
Confidence 345566777888888777666543210 1232 135667778889999999999999987553
No 252
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=90.50 E-value=2.2 Score=43.26 Aligned_cols=123 Identities=11% Similarity=0.020 Sum_probs=73.6
Q ss_pred HHHHHHHHhcccc-HHHHHHHHHHHHHcCCCCchHHHHHHhhhhhhcCC-hHHHHHHHHhc-----------CCCChH--
Q 038200 222 MASVLTACGRSAR-FNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQK-VEVAQRVFDSM-----------ADRNLV-- 286 (523)
Q Consensus 222 ~~~ll~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~-----------~~~~~~-- 286 (523)
...++..+...++ .+.|..+++.+.+.....+......++..+...++ --+|.+++.+. ...+..
T Consensus 251 ~~~Ll~~~~~t~~~~~~a~~~le~L~~~~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~ 330 (754)
T 4gns_B 251 MYSLKSFIAITPSLVDFTIDYLKGLTKKDPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSA 330 (754)
T ss_dssp HHHHHHHHHTCGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHH
T ss_pred HHHHHHHHcccccHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccccc
Confidence 3455555555655 47788888887776432222223333333333322 11233333222 122211
Q ss_pred --------HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcCCC-HHHHHHHHHHHhhcCcHHHHHHHHHHh
Q 038200 287 --------CWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPD-EITFIGVICACVRAELLTEGRKYFRQM 351 (523)
Q Consensus 287 --------~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~ 351 (523)
....-..-+...|+++-|+++-++.+. ..|+ -.+|..|..+|...|+++.|+-.++.+
T Consensus 331 ~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~-------~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 331 RLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTE-------LALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-------HCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred cccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHh-------cCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 111113345678999999999999988 4565 568999999999999999999888887
No 253
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=90.21 E-value=2.1 Score=32.31 Aligned_cols=74 Identities=11% Similarity=0.044 Sum_probs=54.0
Q ss_pred CCChHHHHHHHHHHHcCCCh---HHHHHHHHhCCCCCCCCCc--hHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCh
Q 038200 358 KPNFAHYWCMANLYAGAELT---EEAEEILRKMPEDNDNMSF--ESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDF 432 (523)
Q Consensus 358 ~~~~~~~~~l~~~~~~~g~~---~~A~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~ 432 (523)
.|++.+--.+..++.++.+. .+++.+++++... .| ....+..+.-++.+.|++++|.++.+.+++.+|++.
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~----~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~ 112 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKE----AESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNK 112 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH----CGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCH
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc----CcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCH
Confidence 45666666677777777655 4577888887742 24 244555666689999999999999999999999876
Q ss_pred hhH
Q 038200 433 SRY 435 (523)
Q Consensus 433 ~~~ 435 (523)
.+.
T Consensus 113 QA~ 115 (134)
T 3o48_A 113 QVG 115 (134)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
No 254
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=90.07 E-value=7.2 Score=32.25 Aligned_cols=20 Identities=10% Similarity=0.013 Sum_probs=8.5
Q ss_pred CCCCcccHHHHHHHHHhCCC
Q 038200 48 NNPGTFCVNAVIKAYSNSCV 67 (523)
Q Consensus 48 ~~~~~~~~~~ll~~~~~~~~ 67 (523)
..++...-...+..+.+.+.
T Consensus 29 ~~~~~~vR~~A~~~L~~~~~ 48 (211)
T 3ltm_A 29 QDDSYYVRRAAAYALGKIGD 48 (211)
T ss_dssp TCSSHHHHHHHHHHHHHHCC
T ss_pred cCCCHHHHHHHHHHHHHhCC
Confidence 33444333344444444444
No 255
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=89.26 E-value=3 Score=38.84 Aligned_cols=73 Identities=15% Similarity=0.074 Sum_probs=57.8
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhH----hcCCCCChH
Q 038200 287 CWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMID----FYKIKPNFA 362 (523)
Q Consensus 287 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~~ 362 (523)
....++..+...|++++++..+..+.... +-+...+..+|.++...|+..+|++.|+.+.+ +.|+.|++.
T Consensus 173 a~~~~~~~~l~~g~~~~a~~~l~~~~~~~------P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~ 246 (388)
T 2ff4_A 173 AHTAKAEAEIACGRASAVIAELEALTFEH------PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPT 246 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS------TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHH
Confidence 34456677888899999999988888753 44778899999999999999999998888654 358888877
Q ss_pred HHH
Q 038200 363 HYW 365 (523)
Q Consensus 363 ~~~ 365 (523)
+-.
T Consensus 247 l~~ 249 (388)
T 2ff4_A 247 LRA 249 (388)
T ss_dssp HHH
T ss_pred HHH
Confidence 644
No 256
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=87.99 E-value=2.9 Score=31.47 Aligned_cols=64 Identities=17% Similarity=0.136 Sum_probs=50.7
Q ss_pred ChHHHHHHHHHHHhCCCCCCCcCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhHhcCCCCChHHHHHHHHH
Q 038200 300 KPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANL 370 (523)
Q Consensus 300 ~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 370 (523)
+.-+..+-++.+.... +.|++......+.+|-+.+++..|.++|+.++.+ ..+....|..+++-
T Consensus 68 D~wElrrglN~l~~~D-----lVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K--~~~~~~iY~y~lqE 131 (152)
T 2y69_E 68 DAWELRKGMNTLVGYD-----LVPEPKIIDAALRACRRLNDFASAVRILEVVKDK--AGPHKEIYPYVIQE 131 (152)
T ss_dssp CHHHHHHHHHHHTTSS-----BCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TTTCTTHHHHHHHH
T ss_pred cHHHHHHHHHHHhccc-----cCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh--cCCchhhHHHHHHH
Confidence 4455666777777776 8899999999999999999999999999999885 44445667766653
No 257
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=87.68 E-value=23 Score=35.08 Aligned_cols=379 Identities=9% Similarity=-0.077 Sum_probs=179.9
Q ss_pred HHHHHHHHhhccCCchhHHHHhccCCCCCcccHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCcccHHHHHHHHHccCC
Q 038200 23 WTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGC 102 (523)
Q Consensus 23 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~ 102 (523)
+-+.-+..+.+.+++....+++.. ++.+...-.....+....|+..+|......+-..| .........++..+.+.|.
T Consensus 74 Lr~~~l~~l~~~~~w~~~l~~~~~-~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~-~~~p~~c~~l~~~~~~~g~ 151 (618)
T 1qsa_A 74 LQSRFVNELARREDWRGLLAFSPE-KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTG-KSQPNACDKLFSVWRASGK 151 (618)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHCCS-CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCS-SCCCTHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhCCCHHHHHHhccC-CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCC-CCCcHHHHHHHHHHHHCCC
Confidence 334444455555555555555544 22233333344455555555555555555544433 2223334444444433332
Q ss_pred chHHHHHHHHHHHhCCCCCchHHHHHHHHHHccCChHHHHHHHhhcCCCCcchHHHHHHHHHhcCCHHHHHHHHhcCCCC
Q 038200 103 VERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPER 182 (523)
Q Consensus 103 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 182 (523)
+.. ...-.-+......|+...|..+...+..........++..+.. ...+........ +
T Consensus 152 lt~-----------------~~~~~R~~~al~~~~~~~a~~l~~~l~~~~~~~a~~~~al~~~---p~~~~~~~~~~~-~ 210 (618)
T 1qsa_A 152 QDP-----------------LAYLERIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLANN---PNTVLTFARTTG-A 210 (618)
T ss_dssp SCH-----------------HHHHHHHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHHC---GGGHHHHHHHSC-C
T ss_pred CCH-----------------HHHHHHHHHHHHCCCHHHHHHHHHhCCHHHHHHHHHHHHHHhC---hHhHHHHHhccC-C
Confidence 211 1111122333445556666665555522221222333333322 222233333222 1
Q ss_pred Chh---HHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHHH----HHHHHHHHhccccHHHHHHHHHHHHHcCCCCchH
Q 038200 183 NVV---SWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKT----MASVLTACGRSARFNEGRSVHGYTVRTSLKPNII 255 (523)
Q Consensus 183 ~~~---~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~----~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 255 (523)
+.. .+...+.-+.+ .+.+.|...|....+.. ..+... ...+.......+...++...+....... .+..
T Consensus 211 ~~~~~~~~~~~~~rlar-~d~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~--~~~~ 286 (618)
T 1qsa_A 211 TDFTRQMAAVAFASVAR-QDAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS--QSTS 286 (618)
T ss_dssp CHHHHHHHHHHHHHHHH-HCHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC--CCHH
T ss_pred ChhhHHHHHHHHHHHHh-cCHHHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccC--CChH
Confidence 111 12222333333 37788999888886543 223222 2233333444553455556666544432 2333
Q ss_pred HHHHHhhhhhhcCChHHHHHHHHhcCCCC---hHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcCCCHHHHHHHH
Q 038200 256 LDTALIDLYSKCQKVEVAQRVFDSMADRN---LVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVI 332 (523)
Q Consensus 256 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~ll 332 (523)
...-.+....+.|+++.|...|..|.... ....-=+..++...|+.++|..+|..+... . +|-.++
T Consensus 287 ~~e~~~r~Alr~~d~~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~~---------~--~fYg~l 355 (618)
T 1qsa_A 287 LIERRVRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQQ---------R--GFYPMV 355 (618)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS---------C--SHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhcC---------C--ChHHHH
Confidence 33334444556799999999999987632 222333455677889999999999988652 1 233332
Q ss_pred HHHhhcCcHHHHHHHHHHhhHhcCCCCC-h-----HHHHHHHHHHHcCCChHHHHHHHHhCCCCCCCCCchHHHHHHHHH
Q 038200 333 CACVRAELLTEGRKYFRQMIDFYKIKPN-F-----AHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLS 406 (523)
Q Consensus 333 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~-----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~ 406 (523)
.+ .+.|..-. .... ...+. . ..-..-+..+...|....|...+..+... ..++ ....+..
T Consensus 356 Aa-~~Lg~~~~-------~~~~-~~~~~~~~~~~~~~~~~r~~~L~~~g~~~~a~~ew~~~~~~---~~~~--~~~~la~ 421 (618)
T 1qsa_A 356 AA-QRIGEEYE-------LKID-KAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKS---KSKT--EQAQLAR 421 (618)
T ss_dssp HH-HHTTCCCC-------CCCC-CCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTT---CCHH--HHHHHHH
T ss_pred HH-HHcCCCCC-------CCCC-CCChhHHhhhccChHHHHHHHHHHCCChhhHHHHHHHHHhc---CCHH--HHHHHHH
Confidence 11 12221000 0000 00010 0 01122345677889999999888887742 2332 2234444
Q ss_pred HHHhcCCHHHHHHHHHHHhhcCC---CChhhHHHHHHHHHhcCChhHHHH
Q 038200 407 LCRFQGAVAMVERLAKSFVDMDP---QDFSRYQFLLNVYAVAGQWEDVAR 453 (523)
Q Consensus 407 ~~~~~g~~~~a~~~~~~~~~~~p---~~~~~~~~l~~~~~~~g~~~~A~~ 453 (523)
.....|....+..........+. .-|..|..++.-+.+.-.++..+-
T Consensus 422 ~a~~~~~~~~~v~~~~~~~~~~~~~~~~P~~y~~~i~~~a~~~gv~~~ll 471 (618)
T 1qsa_A 422 YAFNNQWWDLSVQATIAGKLWDHLEERFPLAYNDLFKRYTSGKEIPQSYA 471 (618)
T ss_dssp HHHHTTCHHHHHHHHHHTTCTTCHHHHSCCTTHHHHHHHHTTSSSCHHHH
T ss_pred HHHHCCChHHHHHHHHHHHhhcchhhhCCcchHHHHHHHHHHcCCCHHHH
Confidence 45667878777766554332220 012345666666665555555443
No 258
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=87.41 E-value=18 Score=33.46 Aligned_cols=221 Identities=10% Similarity=0.037 Sum_probs=105.0
Q ss_pred HHHHHhccccHHHHHHHHHHHHHcCCCC-----chHHHHHHhhhhhhcCChHHHHHHHHhcCC------CChHH----HH
Q 038200 225 VLTACGRSARFNEGRSVHGYTVRTSLKP-----NIILDTALIDLYSKCQKVEVAQRVFDSMAD------RNLVC----WN 289 (523)
Q Consensus 225 ll~~~~~~~~~~~a~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~------~~~~~----~~ 289 (523)
++..|...|++.+|..++..+.+.--.. -..++..-+..|...+++.++...+..... +++.. ..
T Consensus 105 L~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i~~ 184 (394)
T 3txn_A 105 LIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGALDL 184 (394)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHHHH
Confidence 4455555666666655555554421110 123444455556666666666655544321 11111 11
Q ss_pred HHHHHHH-hcCChHHHHHHHHHHHhCCCCCCCcCCC---HHHHHHHHHHHhhcCcHHHHHHHH-HHhhHhcCCCCChHHH
Q 038200 290 AMILGHC-IHGKPEEGIKLFTALVNGTVAGGSISPD---EITFIGVICACVRAELLTEGRKYF-RQMIDFYKIKPNFAHY 364 (523)
Q Consensus 290 ~li~~~~-~~g~~~~a~~~~~~m~~~~~~~~~~~p~---~~~~~~ll~~~~~~~~~~~a~~~~-~~~~~~~~~~~~~~~~ 364 (523)
.-...+. ..+++..|...|-+....-. .. ..|. ...|..|..... ....+ .-.++ ......+ ..|....+
T Consensus 185 ~~Gi~~l~~~rdyk~A~~~F~eaf~~f~-~~-~~~~~~~~lkYlvL~aLl~-~~r~e-l~~~l~~~~~~~~-~~pei~~l 259 (394)
T 3txn_A 185 QSGILHAADERDFKTAFSYFYEAFEGFD-SV-DSVKALTSLKYMLLCKIML-GQSDD-VNQLVSGKLAITY-SGRDIDAM 259 (394)
T ss_dssp HHHHHHHHTTSCHHHHHHHHHHHHHHHT-TT-CHHHHHHHHHHHHHHHHHT-TCGGG-HHHHHHSHHHHTT-CSHHHHHH
T ss_pred HhhHHHHHhccCHHHHHHHHHHHHhccc-cc-ccHHHHHHHHHHHHHHHHc-CCHHH-HHHHhcccccccc-CCccHHHH
Confidence 1123344 56777777776665532110 00 0121 123333322222 22111 11222 1222222 34666667
Q ss_pred HHHHHHHHcCCChHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhhHHHHHHHHHh
Q 038200 365 WCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAV 444 (523)
Q Consensus 365 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 444 (523)
..|+.+|. .+++.+..++++..... +..|......+-..+.. --...+.++ ..|-..-.+..++..+.-
T Consensus 260 ~~L~~a~~-~~dl~~f~~iL~~~~~~---l~~D~~l~~h~~~L~~~-----Ir~~~L~~i--~~pYsrIsl~~iA~~l~l 328 (394)
T 3txn_A 260 KSVAEASH-KRSLADFQAALKEYKKE---LAEDVIVQAHLGTLYDT-----MLEQNLCRI--IEPYSRVQVAHVAESIQL 328 (394)
T ss_dssp HHHHHHHH-TTCHHHHHHHHHHSTTT---TTTSHHHHHHHHHHHHH-----HHHHHHHHH--HTTCSEEEHHHHHHHHTC
T ss_pred HHHHHHHH-hCCHHHHHHHHHHHHHH---HhcChHHHHHHHHHHHH-----HHHHHHHHH--hHhhceeeHHHHHHHHCc
Confidence 77777664 56888888888776532 45555432111111100 001111122 345555677777777654
Q ss_pred cCChhHHHHHHHHHHhCCC
Q 038200 445 AGQWEDVARVRELMKKRRM 463 (523)
Q Consensus 445 ~g~~~~A~~~~~~m~~~~~ 463 (523)
..+++...+-+|...|.
T Consensus 329 --s~~evE~~L~~lI~dg~ 345 (394)
T 3txn_A 329 --PMPQVEKKLSQMILDKK 345 (394)
T ss_dssp --CHHHHHHHHHHHHHTTS
T ss_pred --CHHHHHHHHHHHHHCCC
Confidence 67889999999988764
No 259
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=87.41 E-value=11 Score=30.86 Aligned_cols=108 Identities=10% Similarity=0.045 Sum_probs=58.8
Q ss_pred CCchHHHHHHHHHHccCChHHHHHHHhhcCCCCcchHHHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHhcCC
Q 038200 120 FELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGN 199 (523)
Q Consensus 120 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~ 199 (523)
++..+-...+.++.+.++.+....+.+.+..++...-...+.++.+.++.+....+...+..++..+-...+.++...|.
T Consensus 88 ~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~ 167 (201)
T 3ltj_A 88 EDGWVRQSAAVALGQIGDERAVEPLIKALKDEDWFVRIAAAFALGEIGDERAVEPLIKALKDEDGWVRQSAADALGEIGG 167 (201)
T ss_dssp SSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHTCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS
T ss_pred CCHHHHHHHHHHHHHhCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc
Confidence 34555555555555555554444444444455555555566666666665544445555555666666666666666665
Q ss_pred chHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc
Q 038200 200 PGCSLKLFREMMKSGFRGNDKTMASVLTACGR 231 (523)
Q Consensus 200 ~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 231 (523)
..+...+..+.+. ++...-...+.++.+
T Consensus 168 -~~~~~~L~~~l~d---~~~~vr~~A~~aL~~ 195 (201)
T 3ltj_A 168 -ERVRAAMEKLAET---GTGFARKVAVNYLET 195 (201)
T ss_dssp -HHHHHHHHHHHHH---CCHHHHHHHHHHHHH
T ss_pred -hhHHHHHHHHHhC---CCHHHHHHHHHHHHH
Confidence 4455556555543 344444444444443
No 260
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=86.75 E-value=3.7 Score=30.97 Aligned_cols=67 Identities=4% Similarity=-0.115 Sum_probs=52.9
Q ss_pred CchHHHHHHHHHHHHhcCC---HHHHHHHHHHHhhcCCC-ChhhHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 038200 395 SFESIMWVSLLSLCRFQGA---VAMVERLAKSFVDMDPQ-DFSRYQFLLNVYAVAGQWEDVARVRELMKKR 461 (523)
Q Consensus 395 ~~~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 461 (523)
.|+..+-..+..++.+..+ ..++..+++.+.+.+|. ....+..|+.++.+.|++++|.++.+.+.+.
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~ 107 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 107 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence 4555565666666666654 56788899998888884 4678889999999999999999999999654
No 261
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=86.69 E-value=5.4 Score=30.51 Aligned_cols=67 Identities=4% Similarity=-0.115 Sum_probs=53.5
Q ss_pred CchHHHHHHHHHHHHhcCC---HHHHHHHHHHHhhcCCC-ChhhHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 038200 395 SFESIMWVSLLSLCRFQGA---VAMVERLAKSFVDMDPQ-DFSRYQFLLNVYAVAGQWEDVARVRELMKKR 461 (523)
Q Consensus 395 ~~~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 461 (523)
.|+..+-..+..++.+..+ ..++..+++.+....|. .......|+.++.+.|++++|.++.+.+.+.
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~ 106 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 106 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 4566666666677776654 56888899999888884 5567888999999999999999999999764
No 262
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=86.32 E-value=7.1 Score=27.72 Aligned_cols=62 Identities=15% Similarity=0.137 Sum_probs=44.6
Q ss_pred ChHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhhHHHHH
Q 038200 376 LTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLL 439 (523)
Q Consensus 376 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 439 (523)
+.=+..+-++.+. +...-|++.+..+.+.+|++.+++..|.++++-+...-.+...+|..++
T Consensus 25 D~~e~rrglN~l~--~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~~~~~iY~~~l 86 (109)
T 1v54_E 25 DAWELRKGMNTLV--GYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVI 86 (109)
T ss_dssp CHHHHHHHHHHHT--TSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHH
T ss_pred cHHHHHHHHHHHh--ccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCchhhHHHHH
Confidence 3445555566655 3347888889999999999999999999999988764443445566654
No 263
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=85.86 E-value=7.3 Score=27.46 Aligned_cols=88 Identities=13% Similarity=0.035 Sum_probs=64.7
Q ss_pred ccHHHHHHHHHHHHHcCCCCchHHHHHHhhhhhhcCChHHHHHHHHhcCCCChHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 038200 233 ARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALV 312 (523)
Q Consensus 233 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 312 (523)
...++|..|-+.+...+. ...+--+-+..+...|++++|..+.+...-||...|.++-. .+.|..+++...+.++.
T Consensus 20 H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la 95 (115)
T 2uwj_G 20 HCHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAGLG 95 (115)
T ss_dssp TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHH
Confidence 346778888777777653 22232333456778899999999999999999999987755 47888888888888888
Q ss_pred hCCCCCCCcCCCHHHHHH
Q 038200 313 NGTVAGGSISPDEITFIG 330 (523)
Q Consensus 313 ~~~~~~~~~~p~~~~~~~ 330 (523)
.+| .|....|..
T Consensus 96 ~sg------~p~~q~Fa~ 107 (115)
T 2uwj_G 96 GSS------DPALADFAA 107 (115)
T ss_dssp TCS------SHHHHHHHH
T ss_pred hCC------CHHHHHHHH
Confidence 876 565555543
No 264
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=85.74 E-value=22 Score=32.86 Aligned_cols=229 Identities=10% Similarity=0.005 Sum_probs=119.7
Q ss_pred HHHHHHHHHccCChHHHHHHHhhcCC--------CCcchHHHHHHHHHhc-CCHHHHHHHHhcCCC---CChhHH-----
Q 038200 125 MNSLINMYGCFGAMDCARNMFVQMSP--------RDLISWNSIVSGHVRS-GDMSAAHELFDIMPE---RNVVSW----- 187 (523)
Q Consensus 125 ~~~l~~~~~~~g~~~~A~~~~~~~~~--------~~~~~~~~ll~~~~~~-~~~~~a~~~~~~~~~---~~~~~~----- 187 (523)
...|...|.+.|+.++..+++....+ ........++..+... +..+.-.++..+..+ .+-.+|
T Consensus 22 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~flr~~l 101 (394)
T 3txn_A 22 ILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFLRQSL 101 (394)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666666666666666655542 1222344444444433 222222233222221 111223
Q ss_pred -HHHHHHHHhcCCchHHHHHHHHHHHCCCCCC-----HHHHHHHHHHHhccccHHHHHHHHHHHHHc--CCCCchHHHH-
Q 038200 188 -NIMISGYSKSGNPGCSLKLFREMMKSGFRGN-----DKTMASVLTACGRSARFNEGRSVHGYTVRT--SLKPNIILDT- 258 (523)
Q Consensus 188 -~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~-----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~- 258 (523)
.-++..|...|++.+|.+++..+.+.--..| ...|..-+..|...+++.++...+...... .+.+++.+..
T Consensus 102 ~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~ 181 (394)
T 3txn_A 102 EARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGA 181 (394)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHH
Confidence 2577888999999999988888876311212 134556667788889999999888877543 2223332222
Q ss_pred ---HHhhhhh-hcCChHHHHHHHHhcC----CCC------hHHHHHHHHHHHhcCChHHHHHHHH-HHHhCCCCCCCcCC
Q 038200 259 ---ALIDLYS-KCQKVEVAQRVFDSMA----DRN------LVCWNAMILGHCIHGKPEEGIKLFT-ALVNGTVAGGSISP 323 (523)
Q Consensus 259 ---~l~~~~~-~~~~~~~a~~~~~~~~----~~~------~~~~~~li~~~~~~g~~~~a~~~~~-~m~~~~~~~~~~~p 323 (523)
.-.-.+. ..+++..|...|-+.- +.+ ...|..+... . .++..+.-.++. .....- ..|
T Consensus 182 i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~~~~~~~~lkYlvL~aL-l-~~~r~el~~~l~~~~~~~~-----~~p 254 (394)
T 3txn_A 182 LDLQSGILHAADERDFKTAFSYFYEAFEGFDSVDSVKALTSLKYMLLCKI-M-LGQSDDVNQLVSGKLAITY-----SGR 254 (394)
T ss_dssp HHHHHHHHHHHTTSCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHH-H-TTCGGGHHHHHHSHHHHTT-----CSH
T ss_pred HHHHhhHHHHHhccCHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHH-H-cCCHHHHHHHhcccccccc-----CCc
Confidence 2233455 6788888877776542 111 1223222222 2 222222222221 111111 236
Q ss_pred CHHHHHHHHHHHhhcCcHHHHHHHHHHhhHhcCCCCChHH
Q 038200 324 DEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAH 363 (523)
Q Consensus 324 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 363 (523)
+...+..++.++. .+++.....+++.... .+..|+..
T Consensus 255 ei~~l~~L~~a~~-~~dl~~f~~iL~~~~~--~l~~D~~l 291 (394)
T 3txn_A 255 DIDAMKSVAEASH-KRSLADFQAALKEYKK--ELAEDVIV 291 (394)
T ss_dssp HHHHHHHHHHHHH-TTCHHHHHHHHHHSTT--TTTTSHHH
T ss_pred cHHHHHHHHHHHH-hCCHHHHHHHHHHHHH--HHhcChHH
Confidence 6666666766654 4778777777777655 34555543
No 265
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=85.56 E-value=10 Score=32.67 Aligned_cols=117 Identities=12% Similarity=0.045 Sum_probs=76.7
Q ss_pred HHHhhcCcHHHHHHHHHHhhHhcCCCCChHHHHHHHHHHHcCCChHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHhcC
Q 038200 333 CACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQG 412 (523)
Q Consensus 333 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 412 (523)
....+.|++++++.....-++ .-+-|......|+..+|-.|+++.|.+-++...+......|....|..++.+
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR--~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~yr~lI~a----- 77 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIK--ASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKA----- 77 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHH--TCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHH-----
T ss_pred HHHHhCCCHHHHHHHHHHHHH--hCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHHHHHHHH-----
Confidence 345678899999988888877 5666888888999999999999999998888775322222333444444433
Q ss_pred CHHHHHHHHHHHhh--cCC---C-ChhhHHHHHHHHH--hcCChhHHHHHHHHHHhC
Q 038200 413 AVAMVERLAKSFVD--MDP---Q-DFSRYQFLLNVYA--VAGQWEDVARVRELMKKR 461 (523)
Q Consensus 413 ~~~~a~~~~~~~~~--~~p---~-~~~~~~~l~~~~~--~~g~~~~A~~~~~~m~~~ 461 (523)
+..=..+.. ..| . .+.-...|+.+.. ..|+.++|..+..+..+.
T Consensus 78 -----E~~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ 129 (273)
T 1zbp_A 78 -----AQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL 129 (273)
T ss_dssp -----HHHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred -----HHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhc
Confidence 122222222 112 1 2334445555554 469999999999888765
No 266
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=85.30 E-value=7.9 Score=27.34 Aligned_cols=87 Identities=13% Similarity=0.067 Sum_probs=63.8
Q ss_pred ccHHHHHHHHHHHHHcCCCCchHHHHHHhhhhhhcCChHHHHHHHHhcCCCChHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 038200 233 ARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALV 312 (523)
Q Consensus 233 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 312 (523)
...++|..|-+.+...+. ...+--+-+..+...|++++|..+.+...-||...|.++-. .+.|..+++...+.++.
T Consensus 21 H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la 96 (116)
T 2p58_C 21 HYHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCE--YRLGLGSALESRLNRLA 96 (116)
T ss_dssp TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHH--HHHTCHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHH
Confidence 356778888777777653 22232333456778899999999999999999999987765 47788888888888888
Q ss_pred hCCCCCCCcCCCHHHHH
Q 038200 313 NGTVAGGSISPDEITFI 329 (523)
Q Consensus 313 ~~~~~~~~~~p~~~~~~ 329 (523)
.+| .|....|.
T Consensus 97 ~sg------~p~~q~Fa 107 (116)
T 2p58_C 97 RSQ------DPRIQTFV 107 (116)
T ss_dssp TCC------CHHHHHHH
T ss_pred hCC------CHHHHHHH
Confidence 776 56555554
No 267
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=84.98 E-value=9 Score=41.51 Aligned_cols=126 Identities=8% Similarity=-0.019 Sum_probs=75.4
Q ss_pred HHHHHHhhcCcHHHHHHHHHHhhHhcCCCCChHHHHHHHHHHHcCCChHHHHHHHHhCCCCC--CC--C-----------
Q 038200 330 GVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDN--DN--M----------- 394 (523)
Q Consensus 330 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~--~----------- 394 (523)
.++..+...+..+.+.++..-.. .++..--.+..+|...|++++|.+.|++....- .. .
T Consensus 817 ~l~~~l~~~~~~~~~~~l~~~~~------~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~ 890 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQLIGWLN------SDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAE 890 (1139)
T ss_dssp HHHHHHHHHSCTTHHHHHHHHSC------CCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHhhhcc------CCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccc
Confidence 34455555666655555443322 233333456667777788888888887764210 00 0
Q ss_pred -----CchHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCC-CCh----hhHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 038200 395 -----SFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDP-QDF----SRYQFLLNVYAVAGQWEDVARVRELMKKR 461 (523)
Q Consensus 395 -----~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p-~~~----~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 461 (523)
..-..-|..++..+.+.+.++.+.++.+.+++..+ ++. ..|..+...+...|++++|...+-.+.+.
T Consensus 891 ~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~ 967 (1139)
T 4fhn_B 891 KYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTT 967 (1139)
T ss_dssp TTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHS
T ss_pred cccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCH
Confidence 00112355666677778888888888888777443 332 25667778888888888887777666544
No 268
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=84.81 E-value=25 Score=38.07 Aligned_cols=85 Identities=7% Similarity=0.022 Sum_probs=58.1
Q ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHHcCCCCc----hHHHHHHhhhhhhcCChHHHHHHHHhcCCC--ChHHHHHHHH
Q 038200 220 KTMASVLTACGRSARFNEGRSVHGYTVRTSLKPN----IILDTALIDLYSKCQKVEVAQRVFDSMADR--NLVCWNAMIL 293 (523)
Q Consensus 220 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~li~ 293 (523)
.-|..++..+.+.+.++.+.++-..+.+...+.+ ...|..+...+...|++++|...+-.+... -......++.
T Consensus 900 ~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~r~~cLr~LV~ 979 (1139)
T 4fhn_B 900 CYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPLKKSCLLDFVN 979 (1139)
T ss_dssp HHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 3467777778888888888877777666432211 235777888888889999988888766432 2345667777
Q ss_pred HHHhcCChHHH
Q 038200 294 GHCIHGKPEEG 304 (523)
Q Consensus 294 ~~~~~g~~~~a 304 (523)
..|..|..+.-
T Consensus 980 ~lce~~~~~~L 990 (1139)
T 4fhn_B 980 QLTKQGKINQL 990 (1139)
T ss_dssp HHHHHCCHHHH
T ss_pred HHHhCCChhhh
Confidence 77777765543
No 269
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=84.25 E-value=15 Score=31.71 Aligned_cols=115 Identities=13% Similarity=0.053 Sum_probs=57.7
Q ss_pred HHHHHhhccCCchhHHHHhccCCCCCcc----cHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCccc--HHHHHHHHHc
Q 038200 26 NLLKHSADFGSPDYTVLVFKCINNPGTF----CVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYT--FVSLFGSCAK 99 (523)
Q Consensus 26 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~----~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~--~~~ll~~~~~ 99 (523)
..+...++.|+++....+++.-...+.. -+ +.+...+..|+. ++++.+.+.|..++... -.+.+...+.
T Consensus 7 ~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~-t~L~~A~~~g~~----~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~ 81 (285)
T 1wdy_A 7 HLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGW-TPLHNAVQMSRE----DIVELLLRHGADPVLRKKNGATPFLLAAI 81 (285)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTTCC-CHHHHHHHTTCH----HHHHHHHHTTCCTTCCCTTCCCHHHHHHH
T ss_pred hHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCC-cHHHHHHHcCCH----HHHHHHHHcCCCCcccCCCCCCHHHHHHH
Confidence 4455566778888777777764433222 22 234444555664 34555556665554321 1123344445
Q ss_pred cCCchHHHHHHHHHHHhCCCCCchH--HHHHHHHHHccCChHHHHHHHhhcC
Q 038200 100 TGCVERGGMCHGLALKNGVDFELPV--MNSLINMYGCFGAMDCARNMFVQMS 149 (523)
Q Consensus 100 ~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~~A~~~~~~~~ 149 (523)
.|+.+ +++.+.+.|..++... -.+.+...+..|+.+-+..+++.-.
T Consensus 82 ~~~~~----~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~ 129 (285)
T 1wdy_A 82 AGSVK----LLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGA 129 (285)
T ss_dssp HTCHH----HHHHHHHTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTC
T ss_pred cCCHH----HHHHHHHcCCCCCccCcccCCHHHHHHHhCCHHHHHHHHHhCC
Confidence 55543 4444455565544221 1123344455666666666665543
No 270
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=83.90 E-value=15 Score=29.99 Aligned_cols=49 Identities=12% Similarity=0.043 Sum_probs=22.6
Q ss_pred hHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 038200 377 TEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVD 426 (523)
Q Consensus 377 ~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 426 (523)
..++.++|..|..++-|.. -+..|......+-..|++++|..+|+..++
T Consensus 95 ~~~p~~if~~L~~~~IG~~-~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~ 143 (202)
T 3esl_A 95 FHESENTFKYMFNKGIGTK-LSLFYEEFSKLLENAQFFLEAKVLLELGAE 143 (202)
T ss_dssp HHHHHHHHHHHHHHTSSTT-BHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHCCCcHH-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4455555555543332211 233344444444455555555555555554
No 271
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=81.98 E-value=4 Score=35.20 Aligned_cols=132 Identities=12% Similarity=0.076 Sum_probs=77.4
Q ss_pred HHHHHcCCChHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChh---hHHHHHHHHHh
Q 038200 368 ANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFS---RYQFLLNVYAV 444 (523)
Q Consensus 368 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~---~~~~l~~~~~~ 444 (523)
+..+.+.|++++|++.+..-++. -+-|...-..++..++..|++++|..-++...+++|.... .|..++.
T Consensus 4 ~~~ll~~g~L~~al~~~~~~VR~---~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~yr~lI~---- 76 (273)
T 1zbp_A 4 WKNALSEGQLQQALELLIEAIKA---SPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVK---- 76 (273)
T ss_dssp HHHHTTTTCHHHHHHHHHHHHHT---CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHH----
T ss_pred HHHHHhCCCHHHHHHHHHHHHHh---CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHHHHHHH----
Confidence 34567888999999888776653 3446666677778888999999999999999999885322 2222222
Q ss_pred cCChhHHHHHHHHHHhCCCccCCce-----eEEEeCCeEEEEe-cCCCCchHHHHHHHHHHhcccCCccccccccccc
Q 038200 445 AGQWEDVARVRELMKKRRMGRMPGC-----RLVDLKEVVEKLK-VGHFWRGGMKEEVNKMMECRQSRSLATVSKQLPW 516 (523)
Q Consensus 445 ~g~~~~A~~~~~~m~~~~~~~~~~~-----~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 516 (523)
|.....++..-+ ..|+. .|+.. .+.... ...++..++.+.-.+..+..|..+...+...+.|
T Consensus 77 ------aE~~R~~vfaG~--~~P~~~g~~~~w~~~--ll~Al~~~~~G~~~~A~~lr~~A~e~ap~~~G~~~~~~F~w 144 (273)
T 1zbp_A 77 ------AAQARKDFAQGA--ATAKVLGENEELTKS--LVSFNLSMVSQDYEQVSELALQIEELRQEKGFLANDTSFSD 144 (273)
T ss_dssp ------HHHHHHHHTTSC--CCEECCCSCHHHHHH--HHHHHHHHHHTCHHHHHHHHHHHHHHCCCCCEEETTEEESC
T ss_pred ------HHHHHHHHHcCC--CCCCCCCCCHHHHHH--HHHHHHHhhcCCHHHHHHHHHHHHhcCcccCCCcCCCCcch
Confidence 233333333321 22221 01100 000000 0014556677777778888888777776555555
No 272
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=81.70 E-value=29 Score=31.12 Aligned_cols=180 Identities=11% Similarity=0.033 Sum_probs=102.3
Q ss_pred HHccCCh---HHHHHHHhhcCCCCcchHHHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHhcCCchHHHHH--
Q 038200 132 YGCFGAM---DCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKL-- 206 (523)
Q Consensus 132 ~~~~g~~---~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~-- 206 (523)
....|++ =+|.+.+ .++..-|.+.+++++|++++-. -...+.+.|+...|-++
T Consensus 22 ~I~~G~y~~~YEAHQ~~-----------RTi~~Ry~~~k~y~eAidLL~~-----------GA~~ll~~~Q~~sg~DL~~ 79 (336)
T 3lpz_A 22 RIAEGQPEEQYEAAQET-----------RLVAARYSKQGNWAAAVDILAS-----------VSQTLLRSGQGGSGGDLAV 79 (336)
T ss_dssp HHHHCCHHHHHHHHHHH-----------HHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHH
T ss_pred HHhCCCCccccHHHHHH-----------HHHHHHHHhhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHH
Confidence 3445666 5555543 3455667777888888776543 22345556666555443
Q ss_pred --HHHHHHCCCCCCHHHHHHHHHHHhccccHH-HHHHHHHHH----HHcC--CCCchHHHHHHhhhhhhcCChHHHHHHH
Q 038200 207 --FREMMKSGFRGNDKTMASVLTACGRSARFN-EGRSVHGYT----VRTS--LKPNIILDTALIDLYSKCQKVEVAQRVF 277 (523)
Q Consensus 207 --~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~-~a~~~~~~~----~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 277 (523)
++-+.+.++++|..+...++..+.....-+ .=..+.+.+ .+.| ..-+......+...|.+.+++.+|+..|
T Consensus 80 llvevy~~~~~~~~~~~~~rL~~L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ 159 (336)
T 3lpz_A 80 LLVDTFRQAGQRVDGASRGKLLGCLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHL 159 (336)
T ss_dssp HHHHHHHHHTCCCCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Confidence 355556677888877777777776554311 112223322 3333 2336778888889999999999999888
Q ss_pred HhcCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhH
Q 038200 278 DSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMID 353 (523)
Q Consensus 278 ~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 353 (523)
-.-..+....+..++.-+...+.. ..++...-..++. |...++...|..+++...+
T Consensus 160 ilg~~~s~~~~a~mL~ew~~~~~~-------------------~e~dlfiaRaVL~-yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 160 VLGTKESPEVLARMEYEWYKQDES-------------------HTAPLYCARAVLP-YLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp TTSCTTHHHHHHHHHHHHHHTSCG-------------------GGHHHHHHHHHHH-HHHTTCHHHHHHHHHHHHH
T ss_pred HhcCCchHHHHHHHHHHHHHhcCC-------------------ccHHHHHHHHHHH-HHHhCCHHHHHHHHHHHHH
Confidence 533333335555554444333321 1223333333333 4445788888777766654
No 273
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=81.18 E-value=8.3 Score=33.85 Aligned_cols=78 Identities=14% Similarity=0.090 Sum_probs=32.9
Q ss_pred HHccCChHHHHHHHhhcCCC---CcchHHHHHHHHHhcCCHHHHHHHHhcCCCC-ChhHHHHHHHHHHhcCCchHHHHHH
Q 038200 132 YGCFGAMDCARNMFVQMSPR---DLISWNSIVSGHVRSGDMSAAHELFDIMPER-NVVSWNIMISGYSKSGNPGCSLKLF 207 (523)
Q Consensus 132 ~~~~g~~~~A~~~~~~~~~~---~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~ 207 (523)
.+..|+.+-+.-+++.-..+ +..-+.+.+...+..|+.+-+.-+++.-... +...-.+.+...+..|+.+-+.-++
T Consensus 102 A~~~g~~~~v~~Ll~~ga~~~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll 181 (285)
T 3kea_A 102 AVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTFDLAILLSCIHITIKNGHVDMMILLL 181 (285)
T ss_dssp HHHTTCHHHHHHHHHHCGGGGGCSSSGGGSHHHHHHHTTCHHHHHHHHTTSCTTCCCSTHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCccccccCCccHHHHHHHcChHHHHHHHH
Confidence 34455555555555442211 2222233444444556655555555544332 1111222333344555555444444
Q ss_pred HH
Q 038200 208 RE 209 (523)
Q Consensus 208 ~~ 209 (523)
+.
T Consensus 182 ~~ 183 (285)
T 3kea_A 182 DY 183 (285)
T ss_dssp HH
T ss_pred Hc
Confidence 33
No 274
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=79.74 E-value=17 Score=27.36 Aligned_cols=59 Identities=15% Similarity=0.187 Sum_probs=44.0
Q ss_pred HHHHHHHhCCCCCCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhhHHHHH
Q 038200 379 EAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLL 439 (523)
Q Consensus 379 ~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 439 (523)
+..+-++.+. +..+-|++.+....+.+|++.+|+..|.++++-+...-.+...+|..++
T Consensus 71 ElrrglN~l~--~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~~~~~~iY~y~l 129 (152)
T 2y69_E 71 ELRKGMNTLV--GYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVI 129 (152)
T ss_dssp HHHHHHHHHT--TSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHH
T ss_pred HHHHHHHHHh--ccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCchhhHHHHH
Confidence 4445555555 3347899999999999999999999999999998874433445676665
No 275
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=79.50 E-value=24 Score=28.89 Aligned_cols=17 Identities=6% Similarity=-0.220 Sum_probs=7.0
Q ss_pred CChHHHHHHHHHHHhcC
Q 038200 283 RNLVCWNAMILGHCIHG 299 (523)
Q Consensus 283 ~~~~~~~~li~~~~~~g 299 (523)
++...-...+.++...+
T Consensus 155 ~~~~vr~~a~~aL~~~~ 171 (211)
T 3ltm_A 155 EDGWVRQSAADALGEIG 171 (211)
T ss_dssp SSHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHhC
Confidence 34444344444444443
No 276
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=78.38 E-value=36 Score=30.22 Aligned_cols=180 Identities=12% Similarity=0.042 Sum_probs=102.2
Q ss_pred HccCChHHHHHHHhhcCCCCcchHHHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHhcCCchHHHHH----HH
Q 038200 133 GCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKL----FR 208 (523)
Q Consensus 133 ~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~----~~ 208 (523)
...|++=+|.+.+ .++..-|.+.+++++|++++.. -...+.+.|+...|-++ ++
T Consensus 24 I~~G~yYEAhQ~~-----------Rtl~~Ry~~~~~~~eAidlL~~-----------ga~~ll~~~Q~~sa~DLa~llve 81 (312)
T 2wpv_A 24 IKAGDYYEAHQTL-----------RTIANRYVRSKSYEHAIELISQ-----------GALSFLKAKQGGSGTDLIFYLLE 81 (312)
T ss_dssp HHHTCHHHHHHHH-----------HHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hhccChHHHHHHH-----------HHHHHHHHHhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHH
Confidence 3445555555543 3455666677777777666543 22344556666555543 45
Q ss_pred HHHHCCCCCCHHHHHHHHHHHhcccc-----HHHHHHHHHHHHHcCC--CCchHHHHHHhhhhhhcCChHHHHHHHHhcC
Q 038200 209 EMMKSGFRGNDKTMASVLTACGRSAR-----FNEGRSVHGYTVRTSL--KPNIILDTALIDLYSKCQKVEVAQRVFDSMA 281 (523)
Q Consensus 209 ~m~~~~~~p~~~~~~~ll~~~~~~~~-----~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 281 (523)
-..+.+++++......++..+..... ..-.........+.|- .-++..+..+...|.+.+++.+|+..|-.-.
T Consensus 82 v~~~~~~~~~~~~~~rl~~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~ 161 (312)
T 2wpv_A 82 VYDLAEVKVDDISVARLVRLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGT 161 (312)
T ss_dssp HHHHTTCCCSHHHHHHHHHHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSC
T ss_pred HHHHcCCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCC
Confidence 55666788888877777777655321 1222233333333332 2367788888999999999999988887433
Q ss_pred CCChHHHHHHHHHHHhc---CChHHHHHHHHHHHhCCCCCCCcCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhHh
Q 038200 282 DRNLVCWNAMILGHCIH---GKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDF 354 (523)
Q Consensus 282 ~~~~~~~~~li~~~~~~---g~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 354 (523)
..+...+..++.-+... |...++ +...-..++ -|...++...|..+++...+.
T Consensus 162 ~~s~~~~a~~l~~w~~~~~~~~~~e~-------------------dlf~~RaVL-~yL~l~n~~~A~~~~~~f~~~ 217 (312)
T 2wpv_A 162 HDSMIKYVDLLWDWLCQVDDIEDSTV-------------------AEFFSRLVF-NYLFISNISFAHESKDIFLER 217 (312)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCCHHHH-------------------HHHHHHHHH-HHHHTTBHHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhcCCCCcchH-------------------HHHHHHHHH-HHHHhcCHHHHHHHHHHHHHH
Confidence 23455555554444333 332222 111112222 344567888888888876653
No 277
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=76.28 E-value=4 Score=38.56 Aligned_cols=61 Identities=11% Similarity=-0.027 Sum_probs=34.4
Q ss_pred HHHHHHHHHhhcCcHHHHHHHHHHhhHhcCCCC--ChHHHHHHHHHHHcCCChHHHHHHHHhCC
Q 038200 327 TFIGVICACVRAELLTEGRKYFRQMIDFYKIKP--NFAHYWCMANLYAGAELTEEAEEILRKMP 388 (523)
Q Consensus 327 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 388 (523)
+...+...|.+.|+++.|.+.|.++... ...+ -...+..+++.+...+++..+...+.++.
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~-~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~ 195 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSK-AISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVN 195 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHH-HTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh-cCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 3445556666666666666666666553 2222 24455555666666666666666665553
No 278
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=73.14 E-value=30 Score=26.79 Aligned_cols=47 Identities=6% Similarity=0.072 Sum_probs=26.3
Q ss_pred HHHHHHHHhh--cCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 038200 417 VERLAKSFVD--MDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRM 463 (523)
Q Consensus 417 a~~~~~~~~~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 463 (523)
+..+|..+.. ++......|...+..+...|++.+|.++|+.-.+++-
T Consensus 84 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A 132 (152)
T 4a1g_A 84 LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQA 132 (152)
T ss_dssp HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Confidence 4555555544 3333455566666666666666666666665555543
No 279
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=72.53 E-value=38 Score=27.67 Aligned_cols=57 Identities=16% Similarity=0.137 Sum_probs=39.7
Q ss_pred cCCchHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccccHHHHHHHHHHHHHcCCCCc
Q 038200 197 SGNPGCSLKLFREMMKSGFRGN-DKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPN 253 (523)
Q Consensus 197 ~~~~~~a~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 253 (523)
.++...+.++|..|...|+--. +..|......+...|++.+|.++|+.-++.+-.|-
T Consensus 92 ~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P~ 149 (202)
T 3esl_A 92 SNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRPY 149 (202)
T ss_dssp TTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSH
T ss_pred ccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccH
Confidence 3446677788888877776443 44566667777777888888888887777766663
No 280
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=72.21 E-value=12 Score=35.27 Aligned_cols=96 Identities=7% Similarity=-0.059 Sum_probs=46.8
Q ss_pred HHHHhhhhhhcCChHHHHHHHHhcCC------CChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcCCCHHH--H
Q 038200 257 DTALIDLYSKCQKVEVAQRVFDSMAD------RNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEIT--F 328 (523)
Q Consensus 257 ~~~l~~~~~~~~~~~~a~~~~~~~~~------~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~p~~~~--~ 328 (523)
...+...|.+.|+++.|.+.|.++.. .-...+-.++..+...+++..+...+.+....... +-.|+... .
T Consensus 134 ~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~--~~d~~~~~~lk 211 (429)
T 4b4t_R 134 WINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEK--GGDWERRNRYK 211 (429)
T ss_dssp CHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTT--CCCTHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhc--CCCHHHHHHHH
Confidence 34455555555555555555555432 12234555566666666666666666665432100 01222211 1
Q ss_pred HHHHHHHhhcCcHHHHHHHHHHhhHh
Q 038200 329 IGVICACVRAELLTEGRKYFRQMIDF 354 (523)
Q Consensus 329 ~~ll~~~~~~~~~~~a~~~~~~~~~~ 354 (523)
..-...+...+++..|...|-.+...
T Consensus 212 ~~~gl~~l~~r~f~~Aa~~f~e~~~t 237 (429)
T 4b4t_R 212 TYYGIHCLAVRNFKEAAKLLVDSLAT 237 (429)
T ss_dssp HHHHHGGGGTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhChHHHHHHHHHHHhcc
Confidence 11112234567777777777666554
No 281
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=70.43 E-value=52 Score=28.36 Aligned_cols=84 Identities=10% Similarity=0.018 Sum_probs=36.0
Q ss_pred CCCcchHHHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHhcC-CchHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 038200 150 PRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSG-NPGCSLKLFREMMKSGFRGNDKTMASVLTA 228 (523)
Q Consensus 150 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~-~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~ 228 (523)
.++...-...+.++...|+.+..-.+...+..++...-...+.+....+ ....+...+..+.+ .++...-...+.+
T Consensus 139 d~~~~vR~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~~~L~~~l~---d~~~~vR~~A~~a 215 (280)
T 1oyz_A 139 DKSTNVRRATAFAISVINDKATIPLLINLLKDPNGDVRNWAAFAININKYDNSDIRDCFVEMLQ---DKNEEVRIEAIIG 215 (280)
T ss_dssp CSCHHHHHHHHHHHHTC---CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCCHHHHHHHHHHTT---CSCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHcCCCHHHHHHHHHHHHhhccCcHHHHHHHHHHhc---CCCHHHHHHHHHH
Confidence 4454444455555555554332333333333444444444444444433 23344444444433 2344444555555
Q ss_pred HhccccHH
Q 038200 229 CGRSARFN 236 (523)
Q Consensus 229 ~~~~~~~~ 236 (523)
+.+.|+..
T Consensus 216 L~~~~~~~ 223 (280)
T 1oyz_A 216 LSYRKDKR 223 (280)
T ss_dssp HHHTTCGG
T ss_pred HHHhCCHh
Confidence 55555433
No 282
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=69.54 E-value=66 Score=29.20 Aligned_cols=60 Identities=5% Similarity=0.019 Sum_probs=34.7
Q ss_pred HHHHHHHHHhhcCcHHHHHHHHHHhhHhcCCCCChHHHHHHHHHHHcCCC--hHHHHHHHHhCC
Q 038200 327 TFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAEL--TEEAEEILRKMP 388 (523)
Q Consensus 327 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~~A~~~~~~~~ 388 (523)
....++.-|...++.++|.+.++.+..- .+. .......+..++-+.++ .+...+++..+.
T Consensus 219 ki~~lL~EY~~s~D~~EA~~ci~EL~~p-~fh-he~V~~av~~aLE~~~~~~re~~~~LL~~L~ 280 (358)
T 3eiq_C 219 EIDMLLKEYLLSGDISEAEHCLKELEVP-HFH-HELVYEAIVMVLESTGESAFKMILDLLKSLW 280 (358)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHCCT-TCH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCCHHHHHHHHHHccCC-cch-HHHHHHHHHHHHccCchHHHHHHHHHHHHHH
Confidence 4567778888888888888888887531 111 12334444555554332 234555555555
No 283
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=68.48 E-value=41 Score=26.45 Aligned_cols=32 Identities=6% Similarity=0.010 Sum_probs=16.1
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 038200 431 DFSRYQFLLNVYAVAGQWEDVARVRELMKKRR 462 (523)
Q Consensus 431 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 462 (523)
....|...+..+...|++.+|.++|+.-.+++
T Consensus 95 ~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~ 126 (164)
T 2wvi_A 95 LAQFYISWAEEYEARENFRKADAIFQEGIQQK 126 (164)
T ss_dssp BHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 34445555555555555555555555444443
No 284
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=65.95 E-value=16 Score=31.20 Aligned_cols=117 Identities=9% Similarity=-0.091 Sum_probs=55.0
Q ss_pred HHHhCCCchHHHHHHHHHHHCCCCCCccc-------HHHHHHHHH--ccCCchHHHHHHHHHHHhCC-------CCCc--
Q 038200 61 AYSNSCVPDQGVVFYLQMIKNGFMPNSYT-------FVSLFGSCA--KTGCVERGGMCHGLALKNGV-------DFEL-- 122 (523)
Q Consensus 61 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~~-------~~~ll~~~~--~~~~~~~a~~~~~~~~~~~~-------~~~~-- 122 (523)
..++.|+.+....+++.+.+.|..++... .+.|..++. +.|+.+-+..+++.-...+. ..+.
T Consensus 11 ~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~d 90 (260)
T 3jxi_A 11 DIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINSPFRDVY 90 (260)
T ss_dssp HHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHHHTCCBCCSS
T ss_pred HHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhhhcccccccc
Confidence 34556777766666666666555444322 223333321 45666666666555432110 0000
Q ss_pred hHHHHHHHHHHccCChHHHHHHHhhcCCCCcc----------------hHHHHHHHHHhcCCHHHHHHHHh
Q 038200 123 PVMNSLINMYGCFGAMDCARNMFVQMSPRDLI----------------SWNSIVSGHVRSGDMSAAHELFD 177 (523)
Q Consensus 123 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~----------------~~~~ll~~~~~~~~~~~a~~~~~ 177 (523)
..-.+.+...+..|+.+-+.-+++.-..++.. .-.+.+...+..|+.+-+.-+++
T Consensus 91 ~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~ 161 (260)
T 3jxi_A 91 YRGQTALHIAIERRCKHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTE 161 (260)
T ss_dssp EESBCHHHHHHHTTCHHHHHHHHHTTCCTTCCCEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHHHHH
T ss_pred cCCCCHHHHHHHcCCHHHHHHHHhCCCCcCccccccccCcccccccccCCCCHHHHHHHcCCHHHHHHHHh
Confidence 01112333344556666666666544332221 12233444455666666666666
No 285
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=65.54 E-value=34 Score=29.38 Aligned_cols=116 Identities=11% Similarity=0.065 Sum_probs=60.7
Q ss_pred HHHHHHHhCCCchHHHHHHHHHHHCCCCCCcc---cHHHHHHHHHccCCchHHHHHHHHHHHhCCCCCchH--HHHHHHH
Q 038200 57 AVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSY---TFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPV--MNSLINM 131 (523)
Q Consensus 57 ~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~---~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~ 131 (523)
..+...++.|+.+ +++.+.+.|..++.. .-.+.+...+..|+.+ +++.+++.|..++... -.+.+..
T Consensus 7 ~~L~~A~~~g~~~----~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~----~v~~Ll~~g~~~~~~~~~g~t~L~~ 78 (285)
T 1wdy_A 7 HLLIKAVQNEDVD----LVQQLLEGGANVNFQEEEGGWTPLHNAVQMSRED----IVELLLRHGADPVLRKKNGATPFLL 78 (285)
T ss_dssp HHHHHHHHTTCHH----HHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHH----HHHHHHHTTCCTTCCCTTCCCHHHH
T ss_pred hHHHHHHHcCCHH----HHHHHHHcCCCcccccCCCCCcHHHHHHHcCCHH----HHHHHHHcCCCCcccCCCCCCHHHH
Confidence 3455566777765 444555555544432 1123455555667654 4455556666554321 1233444
Q ss_pred HHccCChHHHHHHHhhcCCCC---cchHHHHHHHHHhcCCHHHHHHHHhcCCC
Q 038200 132 YGCFGAMDCARNMFVQMSPRD---LISWNSIVSGHVRSGDMSAAHELFDIMPE 181 (523)
Q Consensus 132 ~~~~g~~~~A~~~~~~~~~~~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 181 (523)
.+..|+.+-+..+++.-..++ ...+ +.+...+..|+.+-...+++.-..
T Consensus 79 A~~~~~~~~v~~Ll~~g~~~~~~~~~g~-t~L~~A~~~~~~~~~~~Ll~~g~~ 130 (285)
T 1wdy_A 79 AAIAGSVKLLKLFLSKGADVNECDFYGF-TAFMEAAVYGKVKALKFLYKRGAN 130 (285)
T ss_dssp HHHHTCHHHHHHHHHTTCCTTCBCTTCC-BHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred HHHcCCHHHHHHHHHcCCCCCccCcccC-CHHHHHHHhCCHHHHHHHHHhCCC
Confidence 556677777777776543322 1112 233444566777776666665443
No 286
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=62.93 E-value=76 Score=27.49 Aligned_cols=14 Identities=21% Similarity=0.339 Sum_probs=5.9
Q ss_pred hcCCHHHHHHHHhc
Q 038200 165 RSGDMSAAHELFDI 178 (523)
Q Consensus 165 ~~~~~~~a~~~~~~ 178 (523)
..|+.+-+.-+++.
T Consensus 104 ~~g~~~~v~~Ll~~ 117 (285)
T 3kea_A 104 DSGNMQTVKLFVKK 117 (285)
T ss_dssp HTTCHHHHHHHHHH
T ss_pred HcCCHHHHHHHHhc
Confidence 34444444444433
No 287
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=62.78 E-value=16 Score=25.77 Aligned_cols=62 Identities=13% Similarity=0.147 Sum_probs=39.2
Q ss_pred HHHHHHHHhCCCCCChhHHHHHHHHhhcc-CCchhHHHHhccCCCCCcccHHHHHHHHHhCCCchHH
Q 038200 6 QIQAHLITSGLFFNNSFWTINLLKHSADF-GSPDYTVLVFKCINNPGTFCVNAVIKAYSNSCVPDQG 71 (523)
Q Consensus 6 ~i~~~~~~~g~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a 71 (523)
.|+++++..|+- +......+-. ... .+.+.|.++++.++.+...+|..++.++...|...-|
T Consensus 25 ~vld~L~~~~vl--t~~~~e~I~~--~~~~t~~~~ar~Lld~L~~rG~~Af~~F~~aL~et~~~~La 87 (97)
T 3ygs_P 25 QLWDVLLSRELF--RPHMIEDIQR--AGSGSRRDQARQLIIDLETRGSQALPLFISCLEDTGQDMLA 87 (97)
T ss_dssp TTHHHHHHTTSS--CHHHHHHHHT--STTCCHHHHHHHHHHHHTTSCTTHHHHHHHHHHTTTCHHHH
T ss_pred HHHHHHHHcCCC--CHHHHHHHHh--ccCCChHHHHHHHHHHHHHcChHHHHHHHHHHHHcCcHHHH
Confidence 466677777765 3333333222 112 4677888888888888788888888888766655444
No 288
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=62.65 E-value=94 Score=32.79 Aligned_cols=108 Identities=8% Similarity=-0.067 Sum_probs=63.6
Q ss_pred HHHHHhhcCcHHHHHHHHHHhhHhcCCCCChHHHHHHHHHHHcCCChHHHHHHHHhCCCCCCCCC-----ch--------
Q 038200 331 VICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMS-----FE-------- 397 (523)
Q Consensus 331 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-----~~-------- 397 (523)
++..|...|..+-+.++..- .+.++..--.+..+|...|++++|.+.|+++... .+.. ++
T Consensus 816 l~~~L~~~~~~~~a~eL~~~------~~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~g-l~~~~~~~~~~~~~~~ll~ 888 (950)
T 4gq2_M 816 LVEKLFLFKQYNACMQLIGW------LNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLV-LYSHTSQFAVLREFQEIAE 888 (950)
T ss_dssp HHHHHHHTTCHHHHHHHGGG------CCSSHHHHHHHHHHHHHTTCHHHHHHHHHTCCCT-TCSSCCSCGGGHHHHHHHH
T ss_pred HHHHHHHhcHHHHHHHHHhh------cCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhh-cccCcccccchhhhhhccC
Confidence 66677778888766554432 2334444446788899999999999999987631 1000 01
Q ss_pred --------HHHHHHHHHHHHhcCCHHHHHHHHHHHhh-cCCCChh----hHHHHHHHHHhc
Q 038200 398 --------SIMWVSLLSLCRFQGAVAMVERLAKSFVD-MDPQDFS----RYQFLLNVYAVA 445 (523)
Q Consensus 398 --------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~p~~~~----~~~~l~~~~~~~ 445 (523)
..-|..++..+-..+-++-+.++.+.+++ ..++++. .+..+.++.+..
T Consensus 889 ~~e~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~l~~~l~~r~f~~a~a~ 949 (950)
T 4gq2_M 889 KYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAA 949 (950)
T ss_dssp HTTTCSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHHHHHHH
T ss_pred cccccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHhhC
Confidence 12345555556666777777777776665 3333332 444444444433
No 289
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=58.94 E-value=55 Score=27.17 Aligned_cols=28 Identities=4% Similarity=-0.212 Sum_probs=15.1
Q ss_pred HHHHHhCCCchHHHHHHHHHHHCCCCCC
Q 038200 59 IKAYSNSCVPDQGVVFYLQMIKNGFMPN 86 (523)
Q Consensus 59 l~~~~~~~~~~~a~~~~~~m~~~~~~p~ 86 (523)
+...++.|+.+.+..+++.+.+.|..++
T Consensus 13 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~ 40 (241)
T 1k1a_A 13 LHIAVVQGNLPAVHRLVNLFQQGGRELD 40 (241)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTTCCSC
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCC
Confidence 3344555666666666655555554444
No 290
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=58.45 E-value=45 Score=27.60 Aligned_cols=18 Identities=6% Similarity=0.089 Sum_probs=10.8
Q ss_pred HhhccCCchhHHHHhccC
Q 038200 30 HSADFGSPDYTVLVFKCI 47 (523)
Q Consensus 30 ~~~~~g~~~~A~~~~~~~ 47 (523)
..++.|+++....+++.-
T Consensus 15 ~A~~~g~~~~~~~Ll~~g 32 (240)
T 3eu9_A 15 KATQYGIYERCRELVEAG 32 (240)
T ss_dssp HHHHTTCHHHHHHHHHTT
T ss_pred HHHHcCChHHHHHHHHcC
Confidence 344567776666666543
No 291
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=57.69 E-value=42 Score=26.04 Aligned_cols=65 Identities=17% Similarity=0.233 Sum_probs=37.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhcCCCCC---hhHHHHHHHHHHhcCC--chHHHHHHHHHHHCCCCCCHH
Q 038200 156 WNSIVSGHVRSGDMSAAHELFDIMPERN---VVSWNIMISGYSKSGN--PGCSLKLFREMMKSGFRGNDK 220 (523)
Q Consensus 156 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~li~~~~~~~~--~~~a~~~~~~m~~~~~~p~~~ 220 (523)
.+.++.-|...|+.++|.+.++++..|. ..+...+..++-+.++ .+.+..++..+.+.|+-+...
T Consensus 12 i~~lL~EY~~~~D~~EA~~cl~EL~~p~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is~~q 81 (152)
T 2ion_A 12 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQ 81 (152)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHHH
Confidence 3456666777777777777777776542 2233344444444322 345667777777766544443
No 292
>2p1h_A APAF-1, apoptotic protease-activating factor 1; folding, unfolding, apoptosis; 1.59A {Homo sapiens} SCOP: a.77.1.3 PDB: 1cww_A 1c15_A 1cy5_A 3ygs_C 2ygs_A
Probab=57.59 E-value=28 Score=24.23 Aligned_cols=61 Identities=13% Similarity=0.093 Sum_probs=41.4
Q ss_pred HhHHHHHHHHhCCCCCChhHHHHHHHHhhccCCchhHHHHhccCCCCCcccHHHHHHHHHhCCCch
Q 038200 4 LLQIQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSNSCVPD 69 (523)
Q Consensus 4 ~~~i~~~~~~~g~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 69 (523)
...|.+++...|+- +..-...+.. .....+.|.++++.++.+...+|..++.++.+.+...
T Consensus 24 v~~lld~L~~~~vl--t~~~~e~I~~---~~t~~~kar~Lld~l~~kG~~af~~F~~aL~~~~~~~ 84 (94)
T 2p1h_A 24 TSYIMDHMISDGFL--TISEEEKVRN---EPTQQQRAAMLIKMILKKDNDSYVSFYNALLHEGYKD 84 (94)
T ss_dssp HHHHHHHHHHHTSS--CHHHHHHHHT---SSSHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHCCCC--CHHHHHHHHc---CCChHHHHHHHHHHHHHcCHHHHHHHHHHHHHcCHHH
Confidence 34567777777766 3333333332 3567788888888888888888888888887776543
No 293
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=57.44 E-value=1.6e+02 Score=29.42 Aligned_cols=232 Identities=15% Similarity=0.072 Sum_probs=0.0
Q ss_pred HHHHHHhcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHcCCCCchHHHHHHhhhhhhcCC
Q 038200 190 MISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQK 269 (523)
Q Consensus 190 li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 269 (523)
...++.-.|+++.|.+++-.. ...+.+++.+.+.-+.-.+- ...++..-.. ....|..-.-..-.-..+..+
T Consensus 300 Yf~vLlLtgqFE~AI~~L~~~----~~vdAVH~AIaL~~~gLL~~---~~~lls~~~~-~~~lN~arLI~~Yt~~F~~td 371 (661)
T 2qx5_A 300 YLQTLLLSGLYGLAIDYTYTF----SEMDAVHLAIGLASLKLFKI---DSSTRLTKKP-KRDIRFANILANYTKSFRYSD 371 (661)
T ss_dssp HHHHHHHTTCHHHHHHHHHTT----CHHHHHHHHHHHHHTTC---------------------CHHHHHHHHHTTTTTTC
T ss_pred HHHHHHHHhhHHHHHHHHHhc----CchhHHHHHHHHHHcCCccC---CCcccccCCC-cccccHHHHHHHHHHHhhcCC
Q ss_pred hHHHHHHHHhcCCCC-----hHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcCCCHHHHHHHHHHHhhcCcHHHH
Q 038200 270 VEVAQRVFDSMADRN-----LVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEG 344 (523)
Q Consensus 270 ~~~a~~~~~~~~~~~-----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a 344 (523)
...|.++|--+.-.+ ...+..+-......++ |..+... +.+|..--..+|.-+...=+++.-
T Consensus 372 ~~~Al~Y~~li~l~~g~~~~~~~~~~l~eLvletr~-------f~~LLG~------i~~dG~r~~G~i~~~~~li~l~d~ 438 (661)
T 2qx5_A 372 PRVAVEYLVLITLNEGPTDVELCHEALRELVLETKE-------FTVLLGK------IGRDGARIPGVIEERQPLLHVRDE 438 (661)
T ss_dssp HHHHHHHHHGGGGSCCHHHHHHHHHHHHHHHHHHCC-------HHHHHCE------ECTTSCEECCHHHHTCGGGTCSCH
T ss_pred HHHHHHHHHHHhccCCchHHHHHHHHHHHHHHhccc-------HHHHcCC------cCCCCCcCcchHHHhhcccccccH
Q ss_pred HHHHHHhhHhcCCCCChHHHHHHHHHHHcCCChHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHhcCC-----------
Q 038200 345 RKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGA----------- 413 (523)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------- 413 (523)
.++.+.+... ...-+...|++++|..+|.-+.+ ..--..+.+.++.-....-+
T Consensus 439 ~~~~~~i~~~------------aA~~ae~~G~~~dAi~LY~La~~----~d~vl~lln~~Ls~~l~~~~~~~~~~~~~~~ 502 (661)
T 2qx5_A 439 KEFLHTITEQ------------AARRADEDGRIYDSILLYQLAEE----YDIVITLVNSLLSDTLSASDLDQPLVGPDDN 502 (661)
T ss_dssp HHHHHHHHHH------------HHHHHHHTTCHHHHHHHHHHTTC----HHHHHHHHHHHHHHHHHHSCTTSCSSCSSCC
T ss_pred HHHHHHHHHH------------HHHHHHHCCCHHHHHHHHHHhcC----HHHHHHHHHHHHHHHhccccccccccccccc
Q ss_pred -----HHHHHHHHHH-------HhhcCCCChhhHHHHHHH-----HHhcCChhHHHHHHHHH
Q 038200 414 -----VAMVERLAKS-------FVDMDPQDFSRYQFLLNV-----YAVAGQWEDVARVRELM 458 (523)
Q Consensus 414 -----~~~a~~~~~~-------~~~~~p~~~~~~~~l~~~-----~~~~g~~~~A~~~~~~m 458 (523)
...|.++.+. ..+..+.+..++..|... +...|+|++|++.++++
T Consensus 503 ~~~~l~~la~~i~~~y~~~~~~~~~~~~~~~~t~~lLl~l~~f~~~~~~g~~~~AL~~i~~L 564 (661)
T 2qx5_A 503 SETNPVLLARRMASIYFDNAGISRQIHVKNKEICMLLLNISSIRELYFNKQWQETLSQMELL 564 (661)
T ss_dssp TTTCHHHHHHHHHHHHTTCHHHHTTSCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred ccccHHHHHHHHHHHHhcCchhhhhccHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhC
No 294
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=56.04 E-value=69 Score=24.81 Aligned_cols=53 Identities=8% Similarity=0.080 Sum_probs=40.0
Q ss_pred hHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccccHHHHHHHHHHHHHcCCCCc
Q 038200 201 GCSLKLFREMMKSGFRGN-DKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPN 253 (523)
Q Consensus 201 ~~a~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 253 (523)
+.+.++|..|...|+--. +..|......+...|++.+|.++|+.-++.+-.|-
T Consensus 82 ~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~ 135 (152)
T 4a1g_A 82 SDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEPR 135 (152)
T ss_dssp SCHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSH
T ss_pred CCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccH
Confidence 447788888888876543 44567777777888888888888888888777764
No 295
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=56.04 E-value=78 Score=25.43 Aligned_cols=156 Identities=9% Similarity=0.035 Sum_probs=75.2
Q ss_pred CCCCcchHHHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 038200 149 SPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTA 228 (523)
Q Consensus 149 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~ 228 (523)
..+|...-...+..+.+.++.+....+.+.+..++...-...+.++...+..+ +...+..+.. .++...-...+.+
T Consensus 24 ~~~~~~vr~~A~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~~a 99 (201)
T 3ltj_A 24 QDDSYYVRRAAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIGDER-AVEPLIKALK---DEDGWVRQSAAVA 99 (201)
T ss_dssp TCSCHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHhcCChhHHHHHHHHHcCCCHHHHHHHHHHHHhhCCHH-HHHHHHHHHc---CCCHHHHHHHHHH
Confidence 33444444444444555555444444444444455554444555555555432 2333333332 2455555555555
Q ss_pred HhccccHHHHHHHHHHHHHcCCCCchHHHHHHhhhhhhcCChHHHHHHHHhcCCCChHHHHHHHHHHHhcCChHHHHHHH
Q 038200 229 CGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLF 308 (523)
Q Consensus 229 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 308 (523)
+...++.+.. ..+..+.. .++..+-...+.++.+.++.+....+...+..++...-...+.++...|. .++...+
T Consensus 100 L~~~~~~~~~-~~L~~~l~---d~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~-~~~~~~L 174 (201)
T 3ltj_A 100 LGQIGDERAV-EPLIKALK---DEDWFVRIAAAFALGEIGDERAVEPLIKALKDEDGWVRQSAADALGEIGG-ERVRAAM 174 (201)
T ss_dssp HHHHCCGGGH-HHHHHHTT---CSSHHHHHHHHHHHHHHTCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-HHHHHHH
T ss_pred HHHhCcHHHH-HHHHHHHc---CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-hhHHHHH
Confidence 5555554322 22222222 34555555555666665654444444444455666666666666666655 3455555
Q ss_pred HHHHh
Q 038200 309 TALVN 313 (523)
Q Consensus 309 ~~m~~ 313 (523)
..+..
T Consensus 175 ~~~l~ 179 (201)
T 3ltj_A 175 EKLAE 179 (201)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 55544
No 296
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=55.53 E-value=85 Score=25.75 Aligned_cols=112 Identities=12% Similarity=-0.081 Sum_probs=54.5
Q ss_pred HHHhhccCCchhHHHHhccCC----CCCcccHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCccc--HHHHHHHHHccC
Q 038200 28 LKHSADFGSPDYTVLVFKCIN----NPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYT--FVSLFGSCAKTG 101 (523)
Q Consensus 28 ~~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~--~~~ll~~~~~~~ 101 (523)
+...++.|+++....+++.-+ .++..-++.|.. .+..|+. ++++.+.+.|..++... -.+.+...+..|
T Consensus 10 l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~-A~~~g~~----~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~ 84 (231)
T 3aji_A 10 ICNLAYSGKLDELKERILADKSLATRTDQDSRTALHW-ACSAGHT----EIVEFLLQLGVPVNDKDDAGWSPLHIAASAG 84 (231)
T ss_dssp HHHHHHHTCHHHHHHHHHHCGGGGGCCCTTSCCHHHH-HHHHTCH----HHHHHHHHTTCCSCCCCTTSCCHHHHHHHHT
T ss_pred HHHHHHhCCHHHHHHHHHhchhhhhcCCCCCCCHHHH-HHHcCcH----HHHHHHHHhCCCCCCcCCCCCCHHHHHHHcC
Confidence 555667788888887776532 233333444333 3444553 44455556665544321 112333344455
Q ss_pred CchHHHHHHHHHHHhCCCCCchH--HHHHHHHHHccCChHHHHHHHhhc
Q 038200 102 CVERGGMCHGLALKNGVDFELPV--MNSLINMYGCFGAMDCARNMFVQM 148 (523)
Q Consensus 102 ~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~~A~~~~~~~ 148 (523)
+.+ +++.+.+.|..++... -.+.+...+..|+.+-+..+++.-
T Consensus 85 ~~~----~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g 129 (231)
T 3aji_A 85 XDE----IVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGG 129 (231)
T ss_dssp CHH----HHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred HHH----HHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcC
Confidence 544 4444455555443221 112333444556666555555543
No 297
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=51.70 E-value=64 Score=26.63 Aligned_cols=42 Identities=14% Similarity=-0.008 Sum_probs=22.1
Q ss_pred HHHHHHHHhCCCCCChh--HHHHHHHHhhccCCchhHHHHhccCC
Q 038200 6 QIQAHLITSGLFFNNSF--WTINLLKHSADFGSPDYTVLVFKCIN 48 (523)
Q Consensus 6 ~i~~~~~~~g~~~~~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~ 48 (523)
.+...+++.|.. ++.. .....+...++.|+++-+..+++...
T Consensus 23 ~~~~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~ 66 (240)
T 3eu9_A 23 ERCRELVEAGYD-VRQPDKENVTLLHWAAINNRIDLVKYYISKGA 66 (240)
T ss_dssp HHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred HHHHHHHHcCCC-cCCCCCCCCCHHHHHHHhCCHHHHHHHHHcCC
Confidence 345566666665 3221 12234445556677766666665543
No 298
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=51.26 E-value=44 Score=28.22 Aligned_cols=89 Identities=11% Similarity=0.005 Sum_probs=49.3
Q ss_pred HHHHHHHhCCCchHHHHHHHHHHHC--CCCC----CcccHHHHHHHHHccCCchHHHHHHHHHHHhCCCCCchHHHHHHH
Q 038200 57 AVIKAYSNSCVPDQGVVFYLQMIKN--GFMP----NSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLIN 130 (523)
Q Consensus 57 ~ll~~~~~~~~~~~a~~~~~~m~~~--~~~p----~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 130 (523)
--++.+....++++|++++++..+. ++++ +.......+..-.....-.-+..+.+.+ .. .++.......+.
T Consensus 23 deLDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l-~~--~~~~~~~r~~v~ 99 (235)
T 2d2s_A 23 EEIDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSI-LS--SNEIVHLKSGTE 99 (235)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHH-HT--CSSHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHH-Hh--cCCHHHHHHHHH
Confidence 3477888889999999988876542 2232 1122223333333322333333344443 22 334555566667
Q ss_pred HHHccCChHHHHHHHhhc
Q 038200 131 MYGCFGAMDCARNMFVQM 148 (523)
Q Consensus 131 ~~~~~g~~~~A~~~~~~~ 148 (523)
.+.+.|+.+.|.++|-+.
T Consensus 100 ~L~rLg~~~~A~~lfL~~ 117 (235)
T 2d2s_A 100 NMIKLGLPEQALDLFLQN 117 (235)
T ss_dssp HHHHTTCHHHHHHHHHHH
T ss_pred HHHHCCChhHHHHHHHHH
Confidence 777777777777776554
No 299
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=50.91 E-value=1e+02 Score=25.36 Aligned_cols=79 Identities=6% Similarity=-0.067 Sum_probs=40.5
Q ss_pred HHHHhhccCCchhHHHHhccC-------CCCCcccHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCccc--HHHHHHHH
Q 038200 27 LLKHSADFGSPDYTVLVFKCI-------NNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYT--FVSLFGSC 97 (523)
Q Consensus 27 l~~~~~~~g~~~~A~~~~~~~-------~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~--~~~ll~~~ 97 (523)
.+...++.|+++....+++.+ ..+|..-++. +...+..|+. ++++.+.+.|..++... -.+.+...
T Consensus 12 ~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~-L~~A~~~~~~----~~v~~Ll~~g~~~~~~~~~g~t~l~~A 86 (241)
T 1k1a_A 12 PLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTP-LHLAVITTLP----SVVRLLVTAGASPMALDRHGQTAAHLA 86 (241)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCH-HHHHHHTTCH----HHHHHHHHTTCCTTCCCTTSCCHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCH-HHHHHHcCCH----HHHHHHHHcCCCccccCCCCCCHHHHH
Confidence 344556678888777777622 1223333333 3444556665 45556666776555432 12334444
Q ss_pred HccCCchHHHHHH
Q 038200 98 AKTGCVERGGMCH 110 (523)
Q Consensus 98 ~~~~~~~~a~~~~ 110 (523)
+..|+.+-+..++
T Consensus 87 ~~~~~~~~~~~Ll 99 (241)
T 1k1a_A 87 CEHRSPTCLRALL 99 (241)
T ss_dssp HHTTCHHHHHHHH
T ss_pred HHcCCHHHHHHHH
Confidence 5566655444443
No 300
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=50.69 E-value=64 Score=25.79 Aligned_cols=15 Identities=7% Similarity=-0.022 Sum_probs=8.3
Q ss_pred hccCCchhHHHHhcc
Q 038200 32 ADFGSPDYTVLVFKC 46 (523)
Q Consensus 32 ~~~g~~~~A~~~~~~ 46 (523)
+..|+.+....++..
T Consensus 13 ~~~g~~~~v~~ll~~ 27 (201)
T 3hra_A 13 ANQRDTKKVKEILQD 27 (201)
T ss_dssp HHTTCHHHHHHHHTC
T ss_pred HHhccHHHHHHHHHc
Confidence 345566666555554
No 301
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=49.40 E-value=48 Score=29.98 Aligned_cols=89 Identities=11% Similarity=-0.052 Sum_probs=45.3
Q ss_pred HHHHHhhccCCchhHHHHhccCCCC---CcccHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCcccHHHHHHHHHccCC
Q 038200 26 NLLKHSADFGSPDYTVLVFKCINNP---GTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGC 102 (523)
Q Consensus 26 ~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~ 102 (523)
..+...+..|+++.+..+++.-..+ |..-++.|. ..+..|+.+ +++.+.+.|..++...-.+.+...+..|+
T Consensus 22 t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~-~A~~~g~~~----~v~~Ll~~g~~~~~~~g~t~L~~A~~~g~ 96 (364)
T 3ljn_A 22 EKIHVAARKGQTDEVRRLIETGVSPTIQNRFGCTALH-LACKFGCVD----TAKYLASVGEVHSLWHGQKPIHLAVMANK 96 (364)
T ss_dssp HHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHH-HHHHHCCHH----HHHHHHHHCCCCCCBTTBCHHHHHHHTTC
T ss_pred CHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCcHHH-HHHHcCCHH----HHHHHHHCCCCccccCCCCHHHHHHHcCC
Confidence 3344555677877777777653332 222233333 334445543 34444444544444223334444556677
Q ss_pred chHHHHHHHHHHHhCCC
Q 038200 103 VERGGMCHGLALKNGVD 119 (523)
Q Consensus 103 ~~~a~~~~~~~~~~~~~ 119 (523)
.+-+..+++.....|..
T Consensus 97 ~~~v~~Ll~~~~~~~~~ 113 (364)
T 3ljn_A 97 TDLVVALVEGAKERGQM 113 (364)
T ss_dssp HHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHhccccCCC
Confidence 77666666655444443
No 302
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=49.22 E-value=1.1e+02 Score=24.98 Aligned_cols=63 Identities=8% Similarity=0.062 Sum_probs=41.5
Q ss_pred HHHHHHHHH---hcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcccc-----HHHHHHHHHHHHHcCC
Q 038200 187 WNIMISGYS---KSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSAR-----FNEGRSVHGYTVRTSL 250 (523)
Q Consensus 187 ~~~li~~~~---~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~-----~~~a~~~~~~~~~~~~ 250 (523)
+..+|+++. +..+++.|+-++-+|++.| .|....-..++-+.-..|. ...|...++.....|.
T Consensus 14 HYd~iSAf~KSiRGSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~ 84 (204)
T 2r9g_A 14 HYDVISAFQKSIRGSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIGLGNPAAAARTVNAVLAAEKLGL 84 (204)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTGGGCHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCC
Confidence 344555554 4578999999999999999 7776666777777666554 2334444455555554
No 303
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=48.37 E-value=1.2e+02 Score=25.27 Aligned_cols=50 Identities=12% Similarity=0.112 Sum_probs=28.6
Q ss_pred HHHHHHHHHhh--cCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCcc
Q 038200 416 MVERLAKSFVD--MDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGR 465 (523)
Q Consensus 416 ~a~~~~~~~~~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~ 465 (523)
....+|..+.. ++-.....|...+..+...|++.+|..+|+.-.+++-.|
T Consensus 132 ~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 183 (223)
T 4aez_C 132 EPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKP 183 (223)
T ss_dssp CHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBS
T ss_pred CHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 34455555544 334455566666666666666666666666665554433
No 304
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=48.31 E-value=1.1e+02 Score=24.85 Aligned_cols=48 Identities=13% Similarity=0.156 Sum_probs=35.2
Q ss_pred HHHHHHHHH---hcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcccc
Q 038200 187 WNIMISGYS---KSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSAR 234 (523)
Q Consensus 187 ~~~li~~~~---~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~ 234 (523)
+..+|+++. +..+++.|+-++-+|++.|-.|....-..++-+.-..|.
T Consensus 7 HYd~ISAf~KSiRGSDpDAAly~LaRMl~~GEDp~~IaRRLvi~AsEDIGl 57 (201)
T 3bge_A 7 FYDLISALHKSVRGSAPDAALYWYARILTAGGDPLYVARRLLAIASEDVGN 57 (201)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGG
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccC
Confidence 344566654 457899999999999999877777777777766655553
No 305
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=47.55 E-value=1e+02 Score=24.24 Aligned_cols=54 Identities=9% Similarity=0.145 Sum_probs=40.0
Q ss_pred hHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccccHHHHHHHHHHHHHcCCCCch
Q 038200 201 GCSLKLFREMMKSGFRGN-DKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNI 254 (523)
Q Consensus 201 ~~a~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 254 (523)
+.+.++|..|...|+--. +..|......+...|++.+|.++|..-++.+-.|-.
T Consensus 77 ~~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~~ 131 (164)
T 2wvi_A 77 NEPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPLE 131 (164)
T ss_dssp SCHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHH
T ss_pred CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHH
Confidence 346678888888877544 445667777777888888888888888888777743
No 306
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=46.74 E-value=88 Score=23.34 Aligned_cols=65 Identities=17% Similarity=0.233 Sum_probs=39.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhcCCCCC---hhHHHHHHHHHHhcCC--chHHHHHHHHHHHCCCCCCHH
Q 038200 156 WNSIVSGHVRSGDMSAAHELFDIMPERN---VVSWNIMISGYSKSGN--PGCSLKLFREMMKSGFRGNDK 220 (523)
Q Consensus 156 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~li~~~~~~~~--~~~a~~~~~~m~~~~~~p~~~ 220 (523)
.+.++.-|...|+.++|.+.++++..|. ..+...+..++-+.++ .+.+..++..+.+.|+-+...
T Consensus 10 i~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is~~q 79 (129)
T 2nsz_A 10 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQ 79 (129)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHHH
Confidence 3456667777788888888888876552 2233344444444432 356677777777776554443
No 307
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=44.93 E-value=88 Score=26.67 Aligned_cols=52 Identities=6% Similarity=-0.111 Sum_probs=25.2
Q ss_pred HHhCCCchHHHHHHHHHHHCCCCC-------CcccHHHHHHHHH--ccCCchHHHHHHHHH
Q 038200 62 YSNSCVPDQGVVFYLQMIKNGFMP-------NSYTFVSLFGSCA--KTGCVERGGMCHGLA 113 (523)
Q Consensus 62 ~~~~~~~~~a~~~~~~m~~~~~~p-------~~~~~~~ll~~~~--~~~~~~~a~~~~~~~ 113 (523)
.++.|+.+.+..+++.....+... |..-.+.|..++. +.|+.+-+..+++.-
T Consensus 20 A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~g 80 (273)
T 2pnn_A 20 AVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVA 80 (273)
T ss_dssp HHHTTCSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHhh
Confidence 345566666666666555444322 2223333444433 235655555555543
No 308
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=44.61 E-value=1e+02 Score=25.32 Aligned_cols=207 Identities=13% Similarity=0.027 Sum_probs=101.4
Q ss_pred HHHHhhccCCchhHHHHhccCCCC---CcccHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCccc--HHHHHHHHHccC
Q 038200 27 LLKHSADFGSPDYTVLVFKCINNP---GTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYT--FVSLFGSCAKTG 101 (523)
Q Consensus 27 l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~--~~~ll~~~~~~~ 101 (523)
.+...++.|+.+....+++.-..+ +..-++.| ...+..|+.+ +++.+.+.|..++... -.+.+...+..|
T Consensus 14 ~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L-~~A~~~~~~~----~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~ 88 (237)
T 3b7b_A 14 PLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPL-MEAAENNHLE----AVKYLIKAGALVDPKDAEGSTCLHLAAKKG 88 (237)
T ss_dssp HHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHH-HHHHHTTCHH----HHHHHHTTTCCCCCCCTTSCCHHHHHHHTT
T ss_pred HHHHHHHcCcHHHHHHHHHcCCCcCccCCCCCCHH-HHHHHhCCHH----HHHHHHhCCCCCCCCCCCCCcHHHHHHHcC
Confidence 344555677777666666653322 22223333 3334555543 4445555554443321 122344444556
Q ss_pred CchHHHHHHHHHHHhC-CCCCch--HHHHHHHHHHccCChHHHHHHHhhcCCCCcc--hHHHHHHHHHhcCCHHHHHHHH
Q 038200 102 CVERGGMCHGLALKNG-VDFELP--VMNSLINMYGCFGAMDCARNMFVQMSPRDLI--SWNSIVSGHVRSGDMSAAHELF 176 (523)
Q Consensus 102 ~~~~a~~~~~~~~~~~-~~~~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~ll~~~~~~~~~~~a~~~~ 176 (523)
+.+- ++.+.+.| ..++.. .-.+.+...+..|+.+-+..+++.-..++.. .-.+.+...+..|+.+-+.-++
T Consensus 89 ~~~~----~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll 164 (237)
T 3b7b_A 89 HYEV----VQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDINIRDNEENICLHWAAFSGCVDIAEILL 164 (237)
T ss_dssp CHHH----HHHHHTTTCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHCCHHHHHHHH
T ss_pred CHHH----HHHHHhCCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHCCCHHHHHHHH
Confidence 5443 34444444 222211 1122344455667777777777654432211 1112344445667777777777
Q ss_pred hcCCCCC---hhHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHH--HHHHHHHHHhccccHHHHHHHHHHHHH
Q 038200 177 DIMPERN---VVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDK--TMASVLTACGRSARFNEGRSVHGYTVR 247 (523)
Q Consensus 177 ~~~~~~~---~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~--~~~~ll~~~~~~~~~~~a~~~~~~~~~ 247 (523)
+.-..++ ..-.+ .+...++.|+.+- ++.+.+.|..++.. .-.+.+......|+.+.+.++.+.+.+
T Consensus 165 ~~g~~~~~~~~~g~t-~L~~A~~~~~~~~----v~~Ll~~gad~~~~d~~g~t~l~~A~~~~~~~~~~~l~~~l~d 235 (237)
T 3b7b_A 165 AAKCDLHAVNIHGDS-PLHIAARENRYDC----VVLFLSRDSDVTLKNKEGETPLQCASLNSQVWSALQMSKALQD 235 (237)
T ss_dssp TTTCCTTCCCTTCCC-HHHHHHHTTCHHH----HHHHHTTTCCTTCCCTTSCCHHHHSCTTCHHHHHHHHHHHHHH
T ss_pred HcCCCCCCcCCCCCC-HHHHHHHhCCHhH----HHHHHHcCCCCCccCCCCCCHHHHHHHHHHHHHHHHHHHHhhc
Confidence 6544322 11122 2334455666543 34445556544322 112344455677888888888877765
No 309
>3qil_A Clathrin heavy chain 1; clathrin trimerization domain, endocytosis, structural prote; 3.92A {Bos taurus}
Probab=43.38 E-value=5.9 Score=29.08 Aligned_cols=72 Identities=8% Similarity=-0.123 Sum_probs=49.7
Q ss_pred HhhccCCchhHHHHhccCCCCCcccHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCcccHHHHHHHHHccCCchHHHHH
Q 038200 30 HSADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMC 109 (523)
Q Consensus 30 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~ 109 (523)
+|.+++++++++.+..+ -..|--.|...+.+++.+-|.++++.+.+.| +...|.+.+-.|...=+++-++++
T Consensus 15 ~ykkN~rw~qSI~L~Kk-----DkLykDAietAa~S~d~elaEeLL~yFVe~g---~kEcF~A~LytCYdLlrpDvVLEl 86 (125)
T 3qil_A 15 VPRGSHMWKQSVELAKK-----DSLYKDAMQYASESKDTELAEELLQWFLQEE---KRECFGACLFTCYDLLRPDVVLEL 86 (125)
T ss_dssp CSSSCCCCSSCCCCCSC-----CCCSSHHHHTTTSSCCSHHHHHHHHHHTTSC---SHHHHHHHHHHHTTCSCTTHHHHT
T ss_pred hhhccccHHHHHHHHHh-----cccHHHHHHHHHHcCCHHHHHHHHHHHHHcC---chHHHHHHHHHHHhccChHHHHHH
Confidence 35566666666555432 2345556777778888888888888888765 667788888888777666666543
No 310
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=42.79 E-value=1.4e+02 Score=24.51 Aligned_cols=68 Identities=18% Similarity=0.167 Sum_probs=44.1
Q ss_pred ChhHHHHHHHHHH---hcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcccc-----HHHHHHHHHHHHHcCC
Q 038200 183 NVVSWNIMISGYS---KSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSAR-----FNEGRSVHGYTVRTSL 250 (523)
Q Consensus 183 ~~~~~~~li~~~~---~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~-----~~~a~~~~~~~~~~~~ 250 (523)
+...+..+|+++. +..+++.|+-++-+|++.|-.|....-..++-+.-..|. ...|...++.....|.
T Consensus 31 ~Gd~HYd~ISAf~KSiRGSDpDAALywLaRMl~~GEDp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~ 106 (213)
T 3ctd_A 31 NGQNHFDVISAFIKSIRGSDPDATLYWLANMVEAGEDPNFIFRRLLISACEDIGLADPNAIVVVQSCCDAFDRVGF 106 (213)
T ss_dssp ---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGSTTHHHHHHHHHHHHHHHCT
T ss_pred CchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCC
Confidence 3344455666665 458899999999999999987877777777777666554 2334444444445554
No 311
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=41.97 E-value=1.5e+02 Score=24.65 Aligned_cols=53 Identities=13% Similarity=0.079 Sum_probs=40.3
Q ss_pred hHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccccHHHHHHHHHHHHHcCCCCc
Q 038200 201 GCSLKLFREMMKSGFRGN-DKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPN 253 (523)
Q Consensus 201 ~~a~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 253 (523)
+.+.++|..|...||--. ...|......+...|++.+|..+|..-++.+-.|-
T Consensus 131 ~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~ 184 (223)
T 4aez_C 131 DEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKPF 184 (223)
T ss_dssp SCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBSH
T ss_pred CCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccH
Confidence 566778888888877543 44567777777888888888888888888776664
No 312
>3crd_A Raidd; caspase recruitment domain, apoptosis, homophilic interaction; NMR {Homo sapiens} SCOP: a.77.1.3
Probab=41.96 E-value=64 Score=22.73 Aligned_cols=68 Identities=9% Similarity=0.053 Sum_probs=41.7
Q ss_pred HHHHHHHhCCCCCChhHHHHHHHHhhccCCchhHHHHhccCCCCCcccHHHHHHHHHhCCCchHHHHHHHHHHHCC
Q 038200 7 IQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNG 82 (523)
Q Consensus 7 i~~~~~~~g~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~ 82 (523)
+.+++...|+- +...+.. +.++....++|.++++.++.....+|..++.++.. .....+.++.....+
T Consensus 26 lld~L~~~~VL--t~~~~e~---I~~~~t~~~k~~~Lld~L~~rG~~Af~~F~~aL~~---~~~La~~L~~~~~~~ 93 (100)
T 3crd_A 26 VLQYLYQEGIL--TENHIQE---INAQTTGLRKTMLLLDILPSRGPKAFDTFLDSLQE---FPWVREKLKKAREEA 93 (100)
T ss_dssp SHHHHHHHTSS--CHHHHHH---HTTCSSSHHHHHHHHHHTTTSCSSCHHHHHHHCTT---HHHHHHHHHHHHHHT
T ss_pred HHHHHHHCCCC--CHHHHHH---HHcCCCHHHHHHHHHHHHHHHCHHHHHHHHHHHHh---CHHHHHHHHhhcccc
Confidence 44555555554 2222222 23345667888888888888888888888888754 444455555554444
No 313
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=41.83 E-value=78 Score=30.38 Aligned_cols=62 Identities=5% Similarity=0.036 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHhhcCcHHHHHHHHHHhhHhcCCCCC-------hHHHHHHHHHHHcCCChHHHHHHHHhCCCC
Q 038200 325 EITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPN-------FAHYWCMANLYAGAELTEEAEEILRKMPED 390 (523)
Q Consensus 325 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 390 (523)
...++.+++.|...+.++.|..+..+.. ++.+ ..-+..+...+.-.+++.+|.+.+......
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~----fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rk 299 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLE----YPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRK 299 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHC----SCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCc----CCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 4567888888888888999988888763 3322 112234566777788888888888887753
No 314
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=40.87 E-value=2.2e+02 Score=27.32 Aligned_cols=65 Identities=5% Similarity=0.071 Sum_probs=42.2
Q ss_pred hhHHHHHHHHHHhcCCchHHHHHHHHHHHCCC-CCCH--HHH-HHHHHHHhccccHHHHHHHHHHHHHc
Q 038200 184 VVSWNIMISGYSKSGNPGCSLKLFREMMKSGF-RGND--KTM-ASVLTACGRSARFNEGRSVHGYTVRT 248 (523)
Q Consensus 184 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~-~p~~--~~~-~~ll~~~~~~~~~~~a~~~~~~~~~~ 248 (523)
...+|.+++.|...+.++.|..+..+..--.. .++. .+| -.+...+.-.+++.+|.+.+..+...
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rk 299 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRK 299 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 34578888888888888888888877641100 1111 222 23455566778888888888877765
No 315
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}
Probab=39.35 E-value=1.5e+02 Score=25.46 Aligned_cols=147 Identities=12% Similarity=0.031 Sum_probs=58.2
Q ss_pred HHHHHHHHhhccCCchhHHHHhccC--------------CCCCcccHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCcc
Q 038200 23 WTINLLKHSADFGSPDYTVLVFKCI--------------NNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSY 88 (523)
Q Consensus 23 ~~~~l~~~~~~~g~~~~A~~~~~~~--------------~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~ 88 (523)
.....+...+..|+.++..++.... ...+..-++.| ...+..|+. ++++.+.+.|..++..
T Consensus 14 ~~~~~lH~Aa~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~t~L-~~Aa~~g~~----~~v~~Ll~~g~~~~~~ 88 (285)
T 3d9h_A 14 LVPRGSHMASMDGKQGGMDGSKPAGPRDFPGIRLLSNPLMGDAVSDWSPM-HEAAIHGHQ----LSLRNLISQGWAVNII 88 (285)
T ss_dssp ----------------------------CCSEECCCCTTCSSSCCSCCHH-HHHHHTTCH----HHHHHHHHTTCCSCEE
T ss_pred HHHHHHHHHhhcCCCCCcccCCCCccccccchhhhhCcccCCCccCCCHH-HHHHHcCCH----HHHHHHHHCCCCCCCc
Confidence 4445566677788877777743321 12333334444 444566665 4455555666555533
Q ss_pred c--HHHHHHHHHccCCchHHHHHHHHHHHhCCCCCchH--HHHHHHHHHccCChHHHHHHHhhcCCCCcc-hHHHHHHHH
Q 038200 89 T--FVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPV--MNSLINMYGCFGAMDCARNMFVQMSPRDLI-SWNSIVSGH 163 (523)
Q Consensus 89 ~--~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~ll~~~ 163 (523)
. -.+.+...+..|+.+-+ +.+++.|..++... ..+.+...+..|..+-+..+++.-...+.. .-.+.+...
T Consensus 89 ~~~g~t~L~~A~~~g~~~~v----~~Ll~~ga~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~g~t~L~~A 164 (285)
T 3d9h_A 89 TADHVSPLHEACLGGHLSCV----KILLKHGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQPESDLASPIHEA 164 (285)
T ss_dssp CTTCCCHHHHHHHTTCHHHH----HHHHHTTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSSCSCTTSCHHHHH
T ss_pred CCCCCCHHHHHHHCCcHHHH----HHHHHCCCCCCCCCCCCCCHHHHHHHcCHHHHHHHHHHCCCCCCCCCCCCCHHHHH
Confidence 2 12344444556665444 44455565544321 112334445567777666666654432211 112234444
Q ss_pred HhcCCHHHHHHHHhc
Q 038200 164 VRSGDMSAAHELFDI 178 (523)
Q Consensus 164 ~~~~~~~~a~~~~~~ 178 (523)
+..|+.+-+..+++.
T Consensus 165 ~~~g~~~~v~~Ll~~ 179 (285)
T 3d9h_A 165 ARRGHVECVNSLIAY 179 (285)
T ss_dssp HHHTCHHHHHHHHHT
T ss_pred HHcCCHHHHHHHHHC
Confidence 555666666666554
No 316
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=39.15 E-value=1.1e+02 Score=28.30 Aligned_cols=144 Identities=10% Similarity=0.065 Sum_probs=68.9
Q ss_pred HHHHhhccCCchhHHHHhccCCCCCc---ccHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCcc--cHHHHHHHHHccC
Q 038200 27 LLKHSADFGSPDYTVLVFKCINNPGT---FCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSY--TFVSLFGSCAKTG 101 (523)
Q Consensus 27 l~~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~--~~~~ll~~~~~~~ 101 (523)
.+...+..|+++-+..+++.-..++. ... ..+...++.|+.+- ++.+.+.|..++.. .-.+.+...+..|
T Consensus 17 ~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~~~-t~L~~A~~~g~~~~----v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g 91 (437)
T 1n11_A 17 PLHVASFMGHLPIVKNLLQRGASPNVSNVKVE-TPLHMAARAGHTEV----AKYLLQNKAKVNAKAKDDQTPLHCAARIG 91 (437)
T ss_dssp HHHHHHHHTCHHHHHHHHHTTCCSCCSSSCCC-CHHHHHHHHTCHHH----HHHHHHHTCCSSCCCTTSCCHHHHHHHHT
T ss_pred HHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCC-CHHHHHHHcCCHHH----HHHHHhCCCCCCCCCCCCCCHHHHHHHCC
Confidence 44455667888877777775443332 222 23344455566543 33444444433322 1123344445556
Q ss_pred CchHHHHHHHHHHHhCCCCCchH--HHHHHHHHHccCChHHHHHHHhhcCCCCcc--hHHHHHHHHHhcCCHHHHHHHHh
Q 038200 102 CVERGGMCHGLALKNGVDFELPV--MNSLINMYGCFGAMDCARNMFVQMSPRDLI--SWNSIVSGHVRSGDMSAAHELFD 177 (523)
Q Consensus 102 ~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~ll~~~~~~~~~~~a~~~~~ 177 (523)
+.+- .+.+++.|..++... -.+.+...++.|+.+.+..+++.-...+.. .-.+.+...+..|+.+-+.-+++
T Consensus 92 ~~~~----v~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~ 167 (437)
T 1n11_A 92 HTNM----VKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLE 167 (437)
T ss_dssp CHHH----HHHHHHHTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred CHHH----HHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHh
Confidence 6543 344445555443221 122344455567777777666654322111 01123334455666666666655
Q ss_pred cC
Q 038200 178 IM 179 (523)
Q Consensus 178 ~~ 179 (523)
.-
T Consensus 168 ~g 169 (437)
T 1n11_A 168 RD 169 (437)
T ss_dssp TT
T ss_pred CC
Confidence 43
No 317
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=38.95 E-value=2.1e+02 Score=25.41 Aligned_cols=54 Identities=9% Similarity=0.001 Sum_probs=38.5
Q ss_pred CCch--HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 038200 394 MSFE--SIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKR 461 (523)
Q Consensus 394 ~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 461 (523)
+.|. ..++...+..+.+.+++..|..+.++++++.|... ..++|.+++..-.+.
T Consensus 201 LQp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~~~--------------~a~qArkil~~ce~~ 256 (325)
T 3mv2_A 201 LSPIHRTNALQVAMSQHFKHKNFLQASYFAGEFLKIISSGP--------------RAEQARKIKNKADSM 256 (325)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSH--------------HHHHHHHHHHHHHTS
T ss_pred CcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCHH--------------HHHHHHHHHHHHhcC
Confidence 5554 34566667778999999999999999999998422 234466666665443
No 318
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=38.87 E-value=54 Score=27.67 Aligned_cols=29 Identities=7% Similarity=-0.125 Sum_probs=18.5
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHHH
Q 038200 431 DFSRYQFLLNVYAVAGQWEDVARVRELMK 459 (523)
Q Consensus 431 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 459 (523)
.+......+..+.+.|+-++|.++|=+.+
T Consensus 90 ~~~~~r~~v~~L~rLg~~~~A~~lfL~~r 118 (235)
T 2d2s_A 90 EIVHLKSGTENMIKLGLPEQALDLFLQNR 118 (235)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCChhHHHHHHHHHH
Confidence 45555566666777777777777665544
No 319
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=38.12 E-value=88 Score=21.89 Aligned_cols=35 Identities=17% Similarity=0.197 Sum_probs=17.2
Q ss_pred ChHHHHHHHhhcCCCCcchHHHHHHHHHhcCCHHH
Q 038200 137 AMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSA 171 (523)
Q Consensus 137 ~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~ 171 (523)
..+.|.++++.++.+...+|..++.++...|+..-
T Consensus 52 ~~~~ar~Lld~L~~rG~~Af~~F~~aL~et~~~~L 86 (97)
T 3ygs_P 52 RRDQARQLIIDLETRGSQALPLFISCLEDTGQDML 86 (97)
T ss_dssp HHHHHHHHHHHHTTSCTTHHHHHHHHHHTTTCHHH
T ss_pred hHHHHHHHHHHHHHcChHHHHHHHHHHHHcCcHHH
Confidence 44555555555555555555555555544444333
No 320
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=37.58 E-value=1.3e+02 Score=22.48 Aligned_cols=59 Identities=12% Similarity=0.198 Sum_probs=38.0
Q ss_pred HHHHhhhhhhcCChHHHHHHHHhcCCCCh---HHHHHHHHHHHhcCC--hHHHHHHHHHHHhCC
Q 038200 257 DTALIDLYSKCQKVEVAQRVFDSMADRNL---VCWNAMILGHCIHGK--PEEGIKLFTALVNGT 315 (523)
Q Consensus 257 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~li~~~~~~g~--~~~a~~~~~~m~~~~ 315 (523)
...++.-|...|+.++|...++++..|.. .....+..++-+.+. .+.+..++..+...+
T Consensus 10 i~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~ 73 (129)
T 2nsz_A 10 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSS 73 (129)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCC
Confidence 44567777778888888888888876532 334444455554432 356677777777666
No 321
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=35.84 E-value=1.2e+02 Score=29.15 Aligned_cols=48 Identities=13% Similarity=0.146 Sum_probs=30.6
Q ss_pred HHhcCCHHHHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChhHHHHHH
Q 038200 408 CRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVR 455 (523)
Q Consensus 408 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 455 (523)
.+-....+.|..+|.++..+.|.+...|+.|+......|+.-+|.-.|
T Consensus 162 ~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y 209 (497)
T 1ya0_A 162 ARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYY 209 (497)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHH
Confidence 333445667777777777777776667777777666666665555433
No 322
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=35.80 E-value=1.8e+02 Score=24.20 Aligned_cols=56 Identities=7% Similarity=-0.135 Sum_probs=28.9
Q ss_pred HHHHHhCCCchHHHHHHHHHHHCCCCCCc-------ccHHHHHHHHHcc---CCchHHHHHHHHHHH
Q 038200 59 IKAYSNSCVPDQGVVFYLQMIKNGFMPNS-------YTFVSLFGSCAKT---GCVERGGMCHGLALK 115 (523)
Q Consensus 59 l~~~~~~~~~~~a~~~~~~m~~~~~~p~~-------~~~~~ll~~~~~~---~~~~~a~~~~~~~~~ 115 (523)
+...++.|+.+....+++.+.+.|..++. .-.+ .+...+.. |+.+-+..+++.-..
T Consensus 6 L~~A~~~g~~~~v~~ll~~l~~~g~~i~~~~~~~d~~g~t-~L~~A~~~~~~g~~~~v~~Ll~~g~~ 71 (256)
T 2etb_A 6 LFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKT-CLMKAVLNLQDGVNACIMPLLQIDKD 71 (256)
T ss_dssp HHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSBTTTTBC-HHHHHHHTCBTTBCTTHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCcccccccCCCCCCC-HHHHHHHccccchHHHHHHHHhcCCc
Confidence 33445566776666666666665554443 2222 33333333 666666555554433
No 323
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=35.73 E-value=1.1e+02 Score=23.57 Aligned_cols=60 Identities=12% Similarity=0.180 Sum_probs=38.6
Q ss_pred HHHHHhhhhhhcCChHHHHHHHHhcCCCCh---HHHHHHHHHHHhcCC--hHHHHHHHHHHHhCC
Q 038200 256 LDTALIDLYSKCQKVEVAQRVFDSMADRNL---VCWNAMILGHCIHGK--PEEGIKLFTALVNGT 315 (523)
Q Consensus 256 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~li~~~~~~g~--~~~a~~~~~~m~~~~ 315 (523)
....++.-|...|+.++|...++++..|.. .+...+..++-+.++ .+.+..++..+...+
T Consensus 11 ki~~lL~EY~~~~D~~EA~~cl~EL~~p~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~ 75 (152)
T 2ion_A 11 EIDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSS 75 (152)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCC
Confidence 345577777788888888888888876532 344444555554322 455677777777666
No 324
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=35.32 E-value=97 Score=20.54 Aligned_cols=61 Identities=10% Similarity=0.091 Sum_probs=39.1
Q ss_pred HHHHHCCCCCCcccHHHHHHHHHccC-CchHHHHHHHHHHHhCCCCCchHHHHHHHHHHccCC
Q 038200 76 LQMIKNGFMPNSYTFVSLFGSCAKTG-CVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGA 137 (523)
Q Consensus 76 ~~m~~~~~~p~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 137 (523)
+.|.+.|+..+..- ..++..+...+ ..-.+.++++.+.+.++..+..|....+..+...|-
T Consensus 6 ~~l~~~g~~~t~~r-~~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~Gl 67 (83)
T 2fu4_A 6 TALKKAGLKVTLPR-LKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGI 67 (83)
T ss_dssp HHHHHTTCCCCHHH-HHHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTS
T ss_pred HHHHHcCCCcCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCC
Confidence 34566776666543 44556665554 566777888888777666666666666666666553
No 325
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=35.30 E-value=1.1e+02 Score=22.89 Aligned_cols=60 Identities=12% Similarity=0.112 Sum_probs=38.4
Q ss_pred HHHHCCCCCCcccHHHHHHHHHccC-CchHHHHHHHHHHHhCCCCCchHHHHHHHHHHccCC
Q 038200 77 QMIKNGFMPNSYTFVSLFGSCAKTG-CVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGA 137 (523)
Q Consensus 77 ~m~~~~~~p~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 137 (523)
.|.+.|++++.. -..++..+...+ ..-.|.++++.+.+.++..+..|.-.-++.+...|-
T Consensus 8 ~l~~~g~r~T~q-R~~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 68 (136)
T 1mzb_A 8 ELRKAGLKVTLP-RVKILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAGL 68 (136)
T ss_dssp HHHHTTCCCCHH-HHHHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTS
T ss_pred HHHHCCCCCCHH-HHHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCc
Confidence 456677666654 344556666555 677888888888887766666665555566665553
No 326
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=35.20 E-value=1.2e+02 Score=23.28 Aligned_cols=61 Identities=8% Similarity=0.037 Sum_probs=39.9
Q ss_pred HHHHHCCCCCCcccHHHHHHHHHccCCchHHHHHHHHHHHhCCCCCchHHHHHHHHHHccCC
Q 038200 76 LQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGA 137 (523)
Q Consensus 76 ~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 137 (523)
+.+.+.|++++.. -..++..+...+..-.|.++++.+.+.++..+..|.-.-+..+...|-
T Consensus 16 ~~l~~~g~r~T~q-R~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 76 (150)
T 2xig_A 16 MSIKKNGLKNSKQ-REEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKENF 76 (150)
T ss_dssp HHHHHCC--CHHH-HHHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTS
T ss_pred HHHHHcCCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCc
Confidence 4456677665543 344566666666778888999998888777777666666666666663
No 327
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=33.53 E-value=1.2e+02 Score=23.26 Aligned_cols=62 Identities=8% Similarity=0.054 Sum_probs=41.8
Q ss_pred HHHHHCCCCCCcccHHHHHHHHHccC-CchHHHHHHHHHHHhCCCCCchHHHHHHHHHHccCCh
Q 038200 76 LQMIKNGFMPNSYTFVSLFGSCAKTG-CVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAM 138 (523)
Q Consensus 76 ~~m~~~~~~p~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 138 (523)
+.|.+.|++++.. -..++..+...+ ..-.|.++++.+.+.++..+..|.-.-++.+...|-+
T Consensus 6 ~~l~~~g~r~T~q-R~~Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 68 (150)
T 2w57_A 6 QALKDAGLKVTLP-RLKILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGIV 68 (150)
T ss_dssp HHHHHTTCCCCHH-HHHHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHcCCCCCHH-HHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCcE
Confidence 4466777776654 344556665555 6778889999988887777776666666666666643
No 328
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=33.43 E-value=2.6e+02 Score=26.41 Aligned_cols=138 Identities=7% Similarity=-0.021 Sum_probs=0.0
Q ss_pred HHHHHHhCCCCCChhHHHHHHHHhhccCCchhHHHHhccCCC---CCcccHHHHHHHHHhCCCchHHHHHHHHHHHCCCC
Q 038200 8 QAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINN---PGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFM 84 (523)
Q Consensus 8 ~~~~~~~g~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~ 84 (523)
.....+.|++ --...|..-.+.+...|++++|.++--..+. ++..+.+.+-..=...|...--+..|..+.+.| +
T Consensus 349 ~~lA~R~~Lp-GAd~L~~~~F~~l~~~g~y~~AA~~aA~sP~giLRt~~Ti~rFk~vp~~pgq~splL~YF~~Ll~~g-~ 426 (494)
T 1bpo_A 349 LRMAVRNNLA-GAEELFARKFNALFAQGNYSEAAKVAANAPKGILRTPDTIRRFQSVPAQPGQTSPLLQYFGILLDQG-Q 426 (494)
T ss_dssp HHHHHHTTCS-SCHHHHHHHHHHHHHTTCHHHHHHHHHHSGGGSSCSHHHHHHHTTSCCCTTSCCHHHHHHHHHHHHS-C
T ss_pred HHHHHhcCCc-cHHHHHHHHHHHHHHcCCHHHHHHHHHhCccccccCHHHHHHHhcCCCCCCCCCHHHHHHHHHhccC-c
Q ss_pred CCcccHHHHHHHHHccCCchHHHHHHHHHHHhCCCCCchHHHHHHHHHHccCChHHHHHHHhhcCCCCcch
Q 038200 85 PNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLIS 155 (523)
Q Consensus 85 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 155 (523)
.+..-=.-+.+.....|+.+....++ .+..+..+...-..+ +..+...|..+|.+...++.+.
T Consensus 427 Ln~~ESlEl~r~vL~q~r~~llekWl---~e~KL~~SEeLGDlv-----k~~d~~LAl~IY~~a~~~~Kvi 489 (494)
T 1bpo_A 427 LNKYESLELCRPVLQQGRKQLLEKWL---KEDKLECSEELGDLV-----KSVDPTLALSVYLRANVPNKVI 489 (494)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHH---HHTCSCCCHHHHHHH-----HHHCSHHHHHHHHHHCCCCC--
T ss_pred cchHHhhHHhHHHHhccHHHHHHHHH---hcCCccccHHhHhhh-----hhcCHHHHHHHHHHcCCcHHHH
No 329
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=32.08 E-value=4.7e+02 Score=27.50 Aligned_cols=48 Identities=2% Similarity=-0.065 Sum_probs=33.1
Q ss_pred HHHHHHHHHhccccHHHHHHHHHHHHHcCCCCc----hHHHHHHhhhhhhcC
Q 038200 221 TMASVLTACGRSARFNEGRSVHGYTVRTSLKPN----IILDTALIDLYSKCQ 268 (523)
Q Consensus 221 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~ 268 (523)
-|..++..+-+.+.++.+.++-+.+++.--+-| ...+..+..+.+..|
T Consensus 899 YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~l~~~l~~r~f~~a~a~g 950 (950)
T 4gq2_M 899 YYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAG 950 (950)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHhhCC
Confidence 677888888888888888888888776532222 245666676666544
No 330
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=31.53 E-value=2.1e+02 Score=23.23 Aligned_cols=115 Identities=12% Similarity=-0.019 Sum_probs=52.8
Q ss_pred HHHHHHhCCCchHHHHHHHHHHHCCCCCCcccHHHHHHHHHccCCchHHHHHHHHHHHhCCCCCchH--HHHHHHHHHcc
Q 038200 58 VIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPV--MNSLINMYGCF 135 (523)
Q Consensus 58 ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~ 135 (523)
.+...++.|+.+....+++.-...-..+|..-.+ .+...+..|+.+ +++.+.+.|..++... -.+.+...+..
T Consensus 9 ~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t-~L~~A~~~g~~~----~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~ 83 (231)
T 3aji_A 9 MICNLAYSGKLDELKERILADKSLATRTDQDSRT-ALHWACSAGHTE----IVEFLLQLGVPVNDKDDAGWSPLHIAASA 83 (231)
T ss_dssp HHHHHHHHTCHHHHHHHHHHCGGGGGCCCTTSCC-HHHHHHHHTCHH----HHHHHHHTTCCSCCCCTTSCCHHHHHHHH
T ss_pred hHHHHHHhCCHHHHHHHHHhchhhhhcCCCCCCC-HHHHHHHcCcHH----HHHHHHHhCCCCCCcCCCCCCHHHHHHHc
Confidence 3555667778777776666533211122332223 333344556544 3444455565444321 11233344455
Q ss_pred CChHHHHHHHhhcCCCC---cchHHHHHHHHHhcCCHHHHHHHHhc
Q 038200 136 GAMDCARNMFVQMSPRD---LISWNSIVSGHVRSGDMSAAHELFDI 178 (523)
Q Consensus 136 g~~~~A~~~~~~~~~~~---~~~~~~ll~~~~~~~~~~~a~~~~~~ 178 (523)
|+.+-+..+++.-...+ ..-+ +.+...+..|+.+-+..+++.
T Consensus 84 ~~~~~v~~Ll~~g~~~~~~~~~g~-t~L~~A~~~~~~~~~~~Ll~~ 128 (231)
T 3aji_A 84 GXDEIVKALLVKGAHVNAVNQNGC-TPLHYAASKNRHEIAVMLLEG 128 (231)
T ss_dssp TCHHHHHHHHHTTCCTTCCCTTSC-CHHHHHHHTTCHHHHHHHHHT
T ss_pred CHHHHHHHHHHcCCCCCCCCCCCC-CHHHHHHHcCCHHHHHHHHHc
Confidence 66666665655433221 1111 223333445555555555543
No 331
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=31.36 E-value=1.5e+02 Score=24.21 Aligned_cols=161 Identities=11% Similarity=0.018 Sum_probs=82.7
Q ss_pred HHHHHHHh-CCCCCChh--HHHHHHHHhhccCCchhHHHHhccCCC--------CCcccHHHHHHHHHhCCCchHHHHHH
Q 038200 7 IQAHLITS-GLFFNNSF--WTINLLKHSADFGSPDYTVLVFKCINN--------PGTFCVNAVIKAYSNSCVPDQGVVFY 75 (523)
Q Consensus 7 i~~~~~~~-g~~~~~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~--------~~~~~~~~ll~~~~~~~~~~~a~~~~ 75 (523)
+...+++. |.. ++.. .....+...+..|+.+-+..+++.-.. .+..-++.| ...+..|+.+ ++
T Consensus 18 ~v~~Ll~~~g~~-~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~L-~~A~~~~~~~----~v 91 (232)
T 2rfa_A 18 ALSKLLKFEGCE-VHQRGAMGETALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTAL-HIAVINQNVN----LV 91 (232)
T ss_dssp HHHHHHTTTCSC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCCCCSTTTTTCCHH-HHHHHTTCHH----HH
T ss_pred HHHHHHHhcCCC-cccCCCCCCCHHHHHHHcCCHHHHHHHHHcCchhccccccccCCCCcCHH-HHHHHcCCHH----HH
Confidence 44455555 655 3322 223345555677888888877765432 122333333 3345556654 45
Q ss_pred HHHHHCCCCCCccc---------------HHHHHHHHHccCCchHHHHHHHHHHHhCCCCCchH--HHHHHHHHHccCCh
Q 038200 76 LQMIKNGFMPNSYT---------------FVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPV--MNSLINMYGCFGAM 138 (523)
Q Consensus 76 ~~m~~~~~~p~~~~---------------~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~g~~ 138 (523)
+.+.+.|..++... -.+.+...+..|+.+- .+.+++.|..++... -.+.+...+..|+.
T Consensus 92 ~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~----v~~Ll~~ga~~~~~d~~g~t~L~~A~~~~~~ 167 (232)
T 2rfa_A 92 RALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEI----VRLLIEHGADIRAQDSLGNTVLHILILQPNK 167 (232)
T ss_dssp HHHHHTTCCTTCCCCSGGGSCCTTCSCCCCSSHHHHHHHHTCHHH----HHHHHHTTCCTTCCCTTSCCHHHHHHTCSCH
T ss_pred HHHHhCCCCCCcccCCcceeecccccccCCCCHHHHHHHcCCHHH----HHHHHHCCCCCCCCCCCCCCHHHHHHHcCCh
Confidence 55556665555421 2334555556676544 444456666554321 22445566677888
Q ss_pred HHHHHHHhhcC----C---------CCcchHHHHHHHHHhcCCHHHHHHHHhc
Q 038200 139 DCARNMFVQMS----P---------RDLISWNSIVSGHVRSGDMSAAHELFDI 178 (523)
Q Consensus 139 ~~A~~~~~~~~----~---------~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 178 (523)
+.+..+++.+. . .|..-+ +-+...++.|+.+-+.-+++.
T Consensus 168 ~~~~~i~~~Ll~~g~~~~~~~~~~~~~~~g~-tpl~~A~~~g~~~~v~~Ll~~ 219 (232)
T 2rfa_A 168 TFACQMYNLLLSYDGGDHLKSLELVPNNQGL-TPFKLAGVEGNIVMFQHLMQK 219 (232)
T ss_dssp HHHHHHHHHHHHTTCSCSSCCGGGCCCTTSC-CHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCchhhhhhhccCCCCCC-CHHHHHHHcCCHHHHHHHHhc
Confidence 77743333222 1 112222 234445567777777766654
No 332
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=31.33 E-value=1.7e+02 Score=22.18 Aligned_cols=111 Identities=9% Similarity=0.052 Sum_probs=56.0
Q ss_pred HHHhhccCCchhHHHHhccCC----CCCcccHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCcccH--HHHHHHHHccC
Q 038200 28 LKHSADFGSPDYTVLVFKCIN----NPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTF--VSLFGSCAKTG 101 (523)
Q Consensus 28 ~~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~--~~ll~~~~~~~ 101 (523)
+...++.|+++....+++... ..+..-++. +...+..|+. ++++.+.+.|..++.... .+.+...+..|
T Consensus 12 l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~-L~~A~~~~~~----~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~ 86 (165)
T 3twr_A 12 LLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTP-LHFAAGYNRV----SVVEYLLQHGADVHAKDKGGLVPLHNACSYG 86 (165)
T ss_dssp HHHHHHHTCHHHHHHHCCTTTTTCCCTTTTCCCH-HHHHHHTTCH----HHHHHHHHTTCCTTCCCTTSCCHHHHHHHTT
T ss_pred HHHHHHhCCHHHHHHHHHcCCCCccccccCCCCH-HHHHHHcChH----HHHHHHHhcCCCCCccCCCCCCHHHHHHHcC
Confidence 345566788888888887433 122222333 3344555664 455666666666554322 12344444556
Q ss_pred CchHHHHHHHHHHHhCCCCCchHH--HHHHHHHHccCChHHHHHHHhh
Q 038200 102 CVERGGMCHGLALKNGVDFELPVM--NSLINMYGCFGAMDCARNMFVQ 147 (523)
Q Consensus 102 ~~~~a~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~g~~~~A~~~~~~ 147 (523)
+.+ +.+.+++.|..++.... .+.+...+..|+.+-+..+++.
T Consensus 87 ~~~----~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ 130 (165)
T 3twr_A 87 HYE----VAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQH 130 (165)
T ss_dssp CHH----HHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHT
T ss_pred cHH----HHHHHHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHc
Confidence 654 34444556655443211 1233444455666655555544
No 333
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=31.28 E-value=1.6e+02 Score=21.96 Aligned_cols=110 Identities=17% Similarity=0.136 Sum_probs=52.7
Q ss_pred HHHhhccCCchhHHHHhccCC-C---CCcccHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCccc--HHHHHHHHHccC
Q 038200 28 LKHSADFGSPDYTVLVFKCIN-N---PGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYT--FVSLFGSCAKTG 101 (523)
Q Consensus 28 ~~~~~~~g~~~~A~~~~~~~~-~---~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~--~~~ll~~~~~~~ 101 (523)
+...++.|+.+.+..+++... . .+..-++.+. . +..|+.+ +++.+.+.|..++... -.+.+...+..|
T Consensus 6 L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~-~-~~~~~~~----~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~ 79 (156)
T 1bd8_A 6 LSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQ-V-MMFGSTA----IALELLKQGASPNVQDTSGTSPVHDAARTG 79 (156)
T ss_dssp HHHHHHHTCHHHHHHHHHTTCCCTTCCCTTSCCHHH-H-SCTTCHH----HHHHHHHTTCCTTCCCTTSCCHHHHHHHTT
T ss_pred HHHHHHhCCHHHHHHHHHhhCcCccccCCCCCcHHH-H-HHcCCHH----HHHHHHHCCCCCCCcCCCCCCHHHHHHHcC
Confidence 445566788888888887621 2 2333333333 3 5566654 4444555565544321 122333344455
Q ss_pred CchHHHHHHHHHHHhCCCCCchH--HHHHHHHHHccCChHHHHHHHhh
Q 038200 102 CVERGGMCHGLALKNGVDFELPV--MNSLINMYGCFGAMDCARNMFVQ 147 (523)
Q Consensus 102 ~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~~A~~~~~~ 147 (523)
+.+ +.+.+.+.|..++... -.+.+...+..|+.+-+.-+++.
T Consensus 80 ~~~----~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ 123 (156)
T 1bd8_A 80 FLD----TLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAAE 123 (156)
T ss_dssp CHH----HHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHTT
T ss_pred cHH----HHHHHHHcCCCCCCcCCCCCcHHHHHHHhChHHHHHHHHhc
Confidence 544 3344445555443221 11233334455666666555555
No 334
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=30.60 E-value=2.8e+02 Score=24.36 Aligned_cols=282 Identities=10% Similarity=-0.033 Sum_probs=0.0
Q ss_pred HHHHHHhhccCCchhHHHHhccCCCCCcccHH---HHHHHHHhCCCchHHHHHHHHHHHCCCCCCcccHHHHHHHHHccC
Q 038200 25 INLLKHSADFGSPDYTVLVFKCINNPGTFCVN---AVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTG 101 (523)
Q Consensus 25 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~ 101 (523)
+.++..-++.|+++.+..+++.-..+|...-. +-+...++.|+ .++.+.+++.|..|+...............
T Consensus 26 ~t~L~~Av~~g~~~~V~~LL~~Gadvn~~~~~~g~TpLh~A~~~g~----~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~ 101 (337)
T 4g8k_A 26 NHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSR----EDIVELLLRHGADPVLRKKNGATPFILAAI 101 (337)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTC----HHHHHHHHHTTCCTTCCCTTCCCHHHHHHH
T ss_pred ChHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCcCHHHHHHHcCC----HHHHHHHHHcCCchhhhccCCCchhHHHHh
Q ss_pred CchHHHHHHHHHHHhCCCCCchHHHHHHHHHHccCChHHHHHHHhhcCCCCcchHH------------HHHHHHHhcCCH
Q 038200 102 CVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWN------------SIVSGHVRSGDM 169 (523)
Q Consensus 102 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~------------~ll~~~~~~~~~ 169 (523)
...........-....+......-.+.+...+..|..+.+..+++.-...+..... +.+...+..|+.
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~d~~g~t~l~~A~~~~~~~~~~~ll~~ga~~~~~~~~~~~~~~~~~~g~T~L~~A~~~g~~ 181 (337)
T 4g8k_A 102 AGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHV 181 (337)
T ss_dssp HTCHHHHHHHHTTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCC-----CTTCSCCHHHHHHHHTCH
T ss_pred cccchhhHHhhhccchhhhhccCCCCHHHHHHHcCcHHHHHHHHHcCCCcchhhccccccccccCCCCcHHHHHHHCCCH
Q ss_pred HHHHHHHhcCCC----CChhHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHHHHH--HHHHHHhccccHHHHHHHHH
Q 038200 170 SAAHELFDIMPE----RNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMA--SVLTACGRSARFNEGRSVHG 243 (523)
Q Consensus 170 ~~a~~~~~~~~~----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~--~ll~~~~~~~~~~~a~~~~~ 243 (523)
+-+..++++... .+....+.+..+... +.......+.+.+.+.|..++..... +.+...+..|..+.+..++.
T Consensus 182 ~~v~~LL~~~gad~n~~d~~g~t~l~~~~~~-~~~~~~~~i~~lLl~~gad~n~~d~~g~t~L~~a~~~~~~~~v~~Ll~ 260 (337)
T 4g8k_A 182 EVLKILLDEMGADVNACDNMGRNALIHALLS-SDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLE 260 (337)
T ss_dssp HHHHHHHHHSCCCTTCCCTTSCCHHHHHHHH-SCTTTHHHHHHHHHHTTCCTTCCCGGGCCHHHHHHHTTCHHHHHHHHT
T ss_pred HHHHHHHhccCCCcCccCCCCCcHHHHHHHH-cCcccHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhhhhHHHHHHHH
Q ss_pred HHHHcCCCCchHHHHHHhhhhhhcCChHHHHHHHHhcCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcCC
Q 038200 244 YTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISP 323 (523)
Q Consensus 244 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~p 323 (523)
.--..--..|..-.+.|..+ +..|+.+-+.-+++.-..++..+ .+...+..|+.+ +.+-+++.| ..|
T Consensus 261 ~~~~~vn~~d~~G~TpL~~A-~~~g~~~iv~~Ll~~GAd~n~~~---~L~~A~~~~~~~----iv~~Ll~~G-----A~~ 327 (337)
T 4g8k_A 261 QEHIEINDTDSDGKTALLLA-VELKLKKIAELLCKRGASTDCGD---LVMTARRNYDHS----LVKVLLSHG-----AKE 327 (337)
T ss_dssp STTCCTTCBCTTSCBHHHHH-HHTTCHHHHHHHHTTSCSSTTCC---HHHHHHHTTCHH----HHHHHHHTT-----CCC
T ss_pred hcCCcccCcCCCCCCHHHHH-HHcCCHHHHHHHHHCCCCCCCCC---HHHHHHHcCCHH----HHHHHHHCc-----CCC
Q ss_pred C
Q 038200 324 D 324 (523)
Q Consensus 324 ~ 324 (523)
|
T Consensus 328 d 328 (337)
T 4g8k_A 328 D 328 (337)
T ss_dssp -
T ss_pred C
No 335
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=30.18 E-value=1e+02 Score=23.49 Aligned_cols=60 Identities=3% Similarity=-0.050 Sum_probs=31.5
Q ss_pred HHHHCCCCCCcccHHHHHHHHHccCCchHHHHHHHHHHHhCCCCCchHHHHHHHHHHccCC
Q 038200 77 QMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGA 137 (523)
Q Consensus 77 ~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 137 (523)
.+.+.|++++.. -..++..+...+..-.|.++++.+.+.++..+..|.-.-++.+...|-
T Consensus 12 ~l~~~g~r~T~q-R~~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 71 (145)
T 2fe3_A 12 TLKETGVRITPQ-RHAILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGL 71 (145)
T ss_dssp HHHHTTCCCCHH-HHHHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTS
T ss_pred HHHHcCCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCC
Confidence 344555554443 233344444445555666666666665555555555555555555553
No 336
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=29.45 E-value=2.6e+02 Score=23.70 Aligned_cols=17 Identities=6% Similarity=-0.461 Sum_probs=7.7
Q ss_pred ChHHHHHHHHHHHcCCC
Q 038200 360 NFAHYWCMANLYAGAEL 376 (523)
Q Consensus 360 ~~~~~~~l~~~~~~~g~ 376 (523)
+...-...+.++.+.|+
T Consensus 205 ~~~vR~~A~~aL~~~~~ 221 (280)
T 1oyz_A 205 NEEVRIEAIIGLSYRKD 221 (280)
T ss_dssp CHHHHHHHHHHHHHTTC
T ss_pred CHHHHHHHHHHHHHhCC
Confidence 34444444444444443
No 337
>3qye_A TBC1 domain family member 1; rabgap, RAB, myocytes, hydrolase activator; 2.20A {Homo sapiens} PDB: 3qyb_A
Probab=29.32 E-value=2.8e+02 Score=24.60 Aligned_cols=129 Identities=6% Similarity=0.081 Sum_probs=77.2
Q ss_pred CchHHHHHHHHHHHC-C----CCCCcccHHHHH---HHHHccCCchHHHHHHHHHHHhCCCCCchHHHHHHHHHHccCCh
Q 038200 67 VPDQGVVFYLQMIKN-G----FMPNSYTFVSLF---GSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAM 138 (523)
Q Consensus 67 ~~~~a~~~~~~m~~~-~----~~p~~~~~~~ll---~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 138 (523)
+-+.|.-+|..+... + ..|+.......+ ..+.+.-+ -++++.+.+.|+.|...++.=++..+.+.=.+
T Consensus 164 ~E~~aF~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~----p~L~~hL~~~~i~~~~~~~~W~l~lF~~~lp~ 239 (331)
T 3qye_A 164 SEEEAFKMLKFLMFDMGLRKQYRPDMIILQIQMYQLSRLLHDYH----RDLYNHLEEHEIGPSLYAAPWFLTMFASQFPL 239 (331)
T ss_dssp CHHHHHHHHHHHHTTTCGGGGGSTTCHHHHHHHHHHHHHHHHHC----HHHHHHHHHTTCCGGGTSHHHHHSTTTTTSCH
T ss_pred hHHHHHHHHHHHHHhcCchhcCCCChHHHHHHHHHHHHHHHHHH----HHHHHHHHHcCCChHHHHHHHHHHHhhhhCCH
Confidence 446788888887643 2 334433222221 22222112 35777788888888888888888888887788
Q ss_pred HHHHHHHhhcCC-CCcchHHH---HHHH----HHhcCCHHHHHHHHhc-CCCCChhHHHHHHHHHHhcCC
Q 038200 139 DCARNMFVQMSP-RDLISWNS---IVSG----HVRSGDMSAAHELFDI-MPERNVVSWNIMISGYSKSGN 199 (523)
Q Consensus 139 ~~A~~~~~~~~~-~~~~~~~~---ll~~----~~~~~~~~~a~~~~~~-~~~~~~~~~~~li~~~~~~~~ 199 (523)
+.+.++++-+.. .....+.. ++.. .....+.++....+.. .+..+......++.-......
T Consensus 240 ~~~lrlwD~~l~~g~~~l~~valaiL~~~~~~ll~~~~~~~il~~l~~~~p~~~~~di~~li~~A~~l~~ 309 (331)
T 3qye_A 240 GFVARVFDMIFLQGTEVIFKVALSLLGSHKPLILQHENLETIVDFIKSTLPNLGLVQMEKTINQVFEMDI 309 (331)
T ss_dssp HHHHHHHHHHHHHCTTHHHHHHHHHHHHTHHHHHTCCSHHHHHHHHHHTTTCCCHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHhCCc
Confidence 999999888762 22222211 1111 2345689999999987 454444555556654444443
No 338
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=28.03 E-value=2e+02 Score=25.43 Aligned_cols=66 Identities=18% Similarity=0.244 Sum_probs=42.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhcCCCCCh---hHHHHHHHHHHhcCC--chHHHHHHHHHHHCCCCCCHHH
Q 038200 156 WNSIVSGHVRSGDMSAAHELFDIMPERNV---VSWNIMISGYSKSGN--PGCSLKLFREMMKSGFRGNDKT 221 (523)
Q Consensus 156 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~li~~~~~~~~--~~~a~~~~~~m~~~~~~p~~~~ 221 (523)
.+.++.-|...|+.++|.+.++++..|.- .+...+..+.-+.++ .+.+..++..+.+.|+-+....
T Consensus 169 i~~lL~EY~~~~D~~EA~~ci~EL~~p~f~~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~~ls~~q~ 239 (307)
T 2zu6_B 169 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTITVDQM 239 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCGGGHHHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHCSSCHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCCCcchHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHCCCCCHHHH
Confidence 45677788888999999999999887632 233334444443322 3456677777777665544443
No 339
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=28.01 E-value=1.1e+02 Score=23.42 Aligned_cols=59 Identities=7% Similarity=0.077 Sum_probs=35.2
Q ss_pred HHHHHCCCCCCcccHHHHHHHHHccCCchHHHHHHHHHHHhCCCCCchHHHHHHHHHHccC
Q 038200 76 LQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFG 136 (523)
Q Consensus 76 ~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 136 (523)
+.+.+.|++++.. -..++..+...+ .-.|.++++.+.+.++..+..|.-.-++.+...|
T Consensus 8 ~~L~~~g~r~T~q-R~~Il~~l~~~~-h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 66 (145)
T 3eyy_A 8 SDLRQRGYRLTPQ-RQLVLEAVDTLE-HATPDDILGEVRKTASGINISTVYRTLELLEELG 66 (145)
T ss_dssp HHHHTTTCCCCHH-HHHHHHHHHHHS-SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHT
T ss_pred HHHHHcCCCcCHH-HHHHHHHHHhcC-CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCC
Confidence 3455567666554 233445555555 6678888888877766666655555555555555
No 340
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=27.80 E-value=3.1e+02 Score=24.10 Aligned_cols=27 Identities=15% Similarity=0.245 Sum_probs=17.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHhcCCCCC
Q 038200 157 NSIVSGHVRSGDMSAAHELFDIMPERN 183 (523)
Q Consensus 157 ~~ll~~~~~~~~~~~a~~~~~~~~~~~ 183 (523)
..++.-|...|+.++|...++++..|.
T Consensus 7 ~~ii~EYf~~~d~~Ea~~~l~el~~p~ 33 (307)
T 2zu6_B 7 TPIIQEYFEHGDTNEVAEMLRDLNLGE 33 (307)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHTTCCGG
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhCCcc
Confidence 345666666677777777777766543
No 341
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=27.47 E-value=35 Score=28.99 Aligned_cols=87 Identities=7% Similarity=-0.109 Sum_probs=53.5
Q ss_pred HHHHHccCCchHHHHHHHHHHHhCCCCCchH-------HHHHHHHHH--ccCChHHHHHHHhhcCC--------------
Q 038200 94 FGSCAKTGCVERGGMCHGLALKNGVDFELPV-------MNSLINMYG--CFGAMDCARNMFVQMSP-------------- 150 (523)
Q Consensus 94 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-------~~~l~~~~~--~~g~~~~A~~~~~~~~~-------------- 150 (523)
+...++.|+.+....+++.+.+.|..++... .+.|..+.. +.|+.+-+..+++.-..
T Consensus 9 L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~ 88 (260)
T 3jxi_A 9 LFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINSPFRD 88 (260)
T ss_dssp HHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHHHTCCBCC
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhhhcccccc
Confidence 3445567999999999998888887666443 233433332 66888877777765321
Q ss_pred CCcchHHHHHHHHHhcCCHHHHHHHHhcCCC
Q 038200 151 RDLISWNSIVSGHVRSGDMSAAHELFDIMPE 181 (523)
Q Consensus 151 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 181 (523)
.|..-+ +.+...+..|+.+-+.-+++.-..
T Consensus 89 ~d~~g~-t~L~~A~~~g~~~~v~~Ll~~ga~ 118 (260)
T 3jxi_A 89 VYYRGQ-TALHIAIERRCKHYVELLVEKGAD 118 (260)
T ss_dssp SSEESB-CHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred cccCCC-CHHHHHHHcCCHHHHHHHHhCCCC
Confidence 111222 234445567888877777775443
No 342
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=27.16 E-value=1.8e+02 Score=22.09 Aligned_cols=36 Identities=0% Similarity=-0.105 Sum_probs=15.6
Q ss_pred ccHHHHHHHHHHHHHcCCCCchHHHHHHhhhhhhcC
Q 038200 233 ARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQ 268 (523)
Q Consensus 233 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 268 (523)
+..-.|.++++.+.+.+...+..|..--++.+...|
T Consensus 35 ~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 70 (145)
T 2fe3_A 35 MAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESG 70 (145)
T ss_dssp SSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTT
T ss_pred CCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCC
Confidence 334445555555555443334333333333444333
No 343
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=26.66 E-value=3.5e+02 Score=24.19 Aligned_cols=26 Identities=15% Similarity=0.224 Sum_probs=17.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHhcCCCC
Q 038200 157 NSIVSGHVRSGDMSAAHELFDIMPER 182 (523)
Q Consensus 157 ~~ll~~~~~~~~~~~a~~~~~~~~~~ 182 (523)
..++.-|...|+.++|.+.++++..|
T Consensus 15 ~~ll~Ey~~~~d~~Ea~~ci~el~~p 40 (339)
T 1ug3_A 15 KAIIEEYLHLNDMKEAVQCVQELASP 40 (339)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHTTCCG
T ss_pred HHHHHHHHhCCCHHHHHHHHHHcCCc
Confidence 44566666677777777777777655
No 344
>2b7e_A PRE-mRNA processing protein PRP40; structural protein; NMR {Saccharomyces cerevisiae} SCOP: a.159.2.1
Probab=26.59 E-value=63 Score=20.22 Aligned_cols=30 Identities=10% Similarity=0.296 Sum_probs=18.6
Q ss_pred chHHHHHHHHHHHCCCCCCcccHHHHHHHH
Q 038200 68 PDQGVVFYLQMIKNGFMPNSYTFVSLFGSC 97 (523)
Q Consensus 68 ~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~ 97 (523)
.++|.+.|.+|++..-.+...||...+..+
T Consensus 2 ~eEae~aF~~lL~~~~V~s~wsweqamr~i 31 (59)
T 2b7e_A 2 AMEAEKEFITMLKENQVDSTWSFSRIISEL 31 (59)
T ss_dssp TTHHHHHHHHHHHHTTCCSSCCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHcCCCCCCcHHHHHHHh
Confidence 356777777776643344445677777766
No 345
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=26.54 E-value=1e+02 Score=22.88 Aligned_cols=44 Identities=11% Similarity=-0.043 Sum_probs=20.3
Q ss_pred HHHHHHhCCCchHHHHHHHHHHHCCCCCCcccHHHHHHHHHccC
Q 038200 58 VIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTG 101 (523)
Q Consensus 58 ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~ 101 (523)
++..+...+.+-.|.++++.+.+.+...+..|....++.+...|
T Consensus 16 Il~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 59 (131)
T 2o03_A 16 ISTLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSG 59 (131)
T ss_dssp HHHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTT
T ss_pred HHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 34444444445555555555555443334444444444444443
No 346
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=26.18 E-value=2.7e+02 Score=24.80 Aligned_cols=137 Identities=15% Similarity=0.078 Sum_probs=72.1
Q ss_pred HHHHHHHHhCCCCCChh--HHHHHHHHhhccCCchhHHHHhccCCCCCcccHHHHHHHHHhCCCchHHHHHHHHHHHCCC
Q 038200 6 QIQAHLITSGLFFNNSF--WTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGF 83 (523)
Q Consensus 6 ~i~~~~~~~g~~~~~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~ 83 (523)
.+...+++.|.+ ++.. .....+...+..|+.+-+..+++.-...+...-...+...+..|+.+-+..+++.....|.
T Consensus 34 ~~v~~Ll~~g~~-~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~ 112 (364)
T 3ljn_A 34 DEVRRLIETGVS-PTIQNRFGCTALHLACKFGCVDTAKYLASVGEVHSLWHGQKPIHLAVMANKTDLVVALVEGAKERGQ 112 (364)
T ss_dssp HHHHHHHHTTCC-TTCCCTTCCCHHHHHHHHCCHHHHHHHHHHCCCCCCBTTBCHHHHHHHTTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHcCCC-ccccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCccccCCCCHHHHHHHcCCHHHHHHHHHhccccCC
Confidence 456677778776 4322 1223455666778888888887765544332222344445667887777666666444344
Q ss_pred CCCc--------------------ccHHHHHHHHHccC--CchHHHHHHHHHHHhCCCCCchH--HHHHHHHHHccCChH
Q 038200 84 MPNS--------------------YTFVSLFGSCAKTG--CVERGGMCHGLALKNGVDFELPV--MNSLINMYGCFGAMD 139 (523)
Q Consensus 84 ~p~~--------------------~~~~~ll~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~ 139 (523)
.++. .-.+ .+...+..| +.+ +++.+++.|..++... -.+.+...+..|+.+
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~g~t-~L~~A~~~g~~~~~----~v~~Ll~~ga~~~~~d~~g~t~L~~A~~~g~~~ 187 (364)
T 3ljn_A 113 MPESLLNECDEREVNEIGSHVKHCKGQT-ALHWCVGLGPEYLE----MIKILVQLGASPTAKDKADETPLMRAMEFRNRE 187 (364)
T ss_dssp CHHHHHTCCCCCCEEEETTEEEEESCCC-HHHHHHHSCGGGHH----HHHHHHHHTCCTTCCCTTSCCHHHHHHHTTCHH
T ss_pred CHHHHHhhcchHhhhhhccccCCCCCCC-HHHHHHHcCCchHH----HHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHH
Confidence 3332 1122 333344445 433 4444455565544322 122334445566776
Q ss_pred HHHHHHhhc
Q 038200 140 CARNMFVQM 148 (523)
Q Consensus 140 ~A~~~~~~~ 148 (523)
-+..+++.-
T Consensus 188 ~v~~Ll~~g 196 (364)
T 3ljn_A 188 ALDLMMDTV 196 (364)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHhcc
Confidence 666666543
No 347
>1oai_A Nuclear RNA export factor; nuclear transport, nuclear transport factor; 1.0A {Homo sapiens} SCOP: a.5.2.3
Probab=26.13 E-value=42 Score=21.00 Aligned_cols=23 Identities=4% Similarity=0.028 Sum_probs=16.3
Q ss_pred CCCchHHHHHHHHHHHCC-CCCCc
Q 038200 65 SCVPDQGVVFYLQMIKNG-FMPNS 87 (523)
Q Consensus 65 ~~~~~~a~~~~~~m~~~~-~~p~~ 87 (523)
.-+++.|...|..+...| ++|+.
T Consensus 33 ~Wd~~~A~~~F~~l~~~~~IP~eA 56 (59)
T 1oai_A 33 NWDYTRSAQAFTHLKAKGEIPEVA 56 (59)
T ss_dssp TTCHHHHHHHHHHHHHTTCSCGGG
T ss_pred CCCHHHHHHHHHHHHHcCCCCHHH
Confidence 347888999998887654 55544
No 348
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}
Probab=25.51 E-value=3.4e+02 Score=23.69 Aligned_cols=116 Identities=9% Similarity=0.029 Sum_probs=65.3
Q ss_pred HHHHHhhccCCchhHHHHhccCC----CCCcccHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCccc--HHHHHHHHHc
Q 038200 26 NLLKHSADFGSPDYTVLVFKCIN----NPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYT--FVSLFGSCAK 99 (523)
Q Consensus 26 ~l~~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~--~~~ll~~~~~ 99 (523)
..+...++.|+.+....++.... .+|..-++ .+...+..|+. ++++.+.+.|..++... -.+.+...+.
T Consensus 26 ~~L~~A~~~g~~~~v~~ll~~~~~~~~~~d~~g~t-~L~~A~~~g~~----~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~ 100 (351)
T 3utm_A 26 DELLEAARSGNEEKLMALLTPLNVNCHASDGRKST-PLHLAAGYNRV----RIVQLLLQHGADVHAKDKGGLVPLHNACS 100 (351)
T ss_dssp HHHHHHHHHTCHHHHHHHCCTTTTTCCCSSTTCCC-HHHHHHHTTCH----HHHHHHHHTTCCTTCCCTTCCCHHHHHHH
T ss_pred hhHHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCC-HHHHHHHcCCH----HHHHHHHHcCCCCCccCCCCCcHHHHHHH
Confidence 33445567899999999987633 12333333 34444566765 45555666666554332 1233444455
Q ss_pred cCCchHHHHHHHHHHHhCCCCCchH--HHHHHHHHHccCChHHHHHHHhhcCC
Q 038200 100 TGCVERGGMCHGLALKNGVDFELPV--MNSLINMYGCFGAMDCARNMFVQMSP 150 (523)
Q Consensus 100 ~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~~A~~~~~~~~~ 150 (523)
.|+.+ +++.+++.|..++... -.+.+...+..|+.+-+..+++.-..
T Consensus 101 ~g~~~----iv~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~ 149 (351)
T 3utm_A 101 YGHYE----VTELLLKHGACVNAMDLWQFTPLHEAASKNRVEVCSLLLSHGAD 149 (351)
T ss_dssp TTCHH----HHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred CCCHH----HHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence 66654 4455566666554322 11344455667888888877776543
No 349
>2p1h_A APAF-1, apoptotic protease-activating factor 1; folding, unfolding, apoptosis; 1.59A {Homo sapiens} SCOP: a.77.1.3 PDB: 1cww_A 1c15_A 1cy5_A 3ygs_C 2ygs_A
Probab=24.72 E-value=1.7e+02 Score=20.04 Aligned_cols=38 Identities=16% Similarity=0.056 Sum_probs=20.7
Q ss_pred cCChHHHHHHHhhcCCCCcchHHHHHHHHHhcCCHHHH
Q 038200 135 FGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAA 172 (523)
Q Consensus 135 ~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a 172 (523)
....+.|.++++.+..+....|..++.++...+...-|
T Consensus 49 ~t~~~kar~Lld~l~~kG~~af~~F~~aL~~~~~~~La 86 (94)
T 2p1h_A 49 PTQQQRAAMLIKMILKKDNDSYVSFYNALLHEGYKDLA 86 (94)
T ss_dssp SSHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHH
T ss_pred CChHHHHHHHHHHHHHcCHHHHHHHHHHHHHcCHHHHH
Confidence 34555566666665555555555555555555543333
No 350
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=24.23 E-value=3.8e+02 Score=23.88 Aligned_cols=65 Identities=9% Similarity=-0.041 Sum_probs=37.8
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc-ccHHHHHHHHHHHHHcCCCC
Q 038200 187 WNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRS-ARFNEGRSVHGYTVRTSLKP 252 (523)
Q Consensus 187 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~-~~~~~a~~~~~~~~~~~~~~ 252 (523)
...++.-|...|+.++|...++++..... ........+..++-+. ...+.+..++..+.+.++-+
T Consensus 14 ~~~ll~Ey~~~~d~~Ea~~ci~el~~p~~-~~~~v~~~i~~~le~~~~~re~~~~Ll~~L~~~~~is 79 (339)
T 1ug3_A 14 SKAIIEEYLHLNDMKEAVQCVQELASPSL-LFIFVRHGVESTLERSAIAREHMGQLLHQLLCAGHLS 79 (339)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTCCGGG-HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHTTSSC
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHcCCccc-HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHCCCCC
Confidence 45678889999999999999888742211 1122233333333332 22345556677776665443
No 351
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=24.23 E-value=1.8e+02 Score=22.58 Aligned_cols=68 Identities=6% Similarity=-0.045 Sum_probs=46.3
Q ss_pred hHHHHHHHH-HHHCCCCCCcccHHHHHHHHHccCCchHHHHHHHHHHHh--CCCCCchHHHHHHHHHHccCC
Q 038200 69 DQGVVFYLQ-MIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKN--GVDFELPVMNSLINMYGCFGA 137 (523)
Q Consensus 69 ~~a~~~~~~-m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~ 137 (523)
+.+++-+.+ +.+.|++++.. -..++..+...+..-.|.++++.+.+. ++..+..|.-.-++.+...|-
T Consensus 14 ~~~~~~~~~~L~~~g~r~T~q-R~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Gl 84 (162)
T 4ets_A 14 DVLLERFKKILRQGGLKYTKQ-REVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEM 84 (162)
T ss_dssp HHHHHHHHHHHHHHTCCCCHH-HHHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCC
Confidence 445555544 45567777553 456677777777888899999999887 766676665555666666663
No 352
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=23.75 E-value=93 Score=23.52 Aligned_cols=16 Identities=0% Similarity=-0.305 Sum_probs=6.6
Q ss_pred CCchHHHHHHHHHHHC
Q 038200 66 CVPDQGVVFYLQMIKN 81 (523)
Q Consensus 66 ~~~~~a~~~~~~m~~~ 81 (523)
+.+-.|.++++.+.+.
T Consensus 27 ~~h~sa~eI~~~l~~~ 42 (139)
T 3mwm_A 27 EEFRSAQELHDMLKHK 42 (139)
T ss_dssp SSCEEHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHh
Confidence 3333444444444433
No 353
>3mkr_B Coatomer subunit alpha; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=23.54 E-value=3.9e+02 Score=23.68 Aligned_cols=37 Identities=11% Similarity=0.181 Sum_probs=29.2
Q ss_pred CCch--HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCC
Q 038200 394 MSFE--SIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQ 430 (523)
Q Consensus 394 ~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 430 (523)
+.|. ..++...+..+.+.+++..|..+.++++++.|+
T Consensus 192 Lqp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~ 230 (320)
T 3mkr_B 192 LQPVHMILVLRTALNLFFKLKNFRTAAAFARRLLELGPK 230 (320)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTBHHHHHHHHHHHHHTCCC
T ss_pred CcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCC
Confidence 4554 345566667788999999999999999999884
No 354
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=23.51 E-value=52 Score=20.61 Aligned_cols=24 Identities=17% Similarity=0.076 Sum_probs=16.2
Q ss_pred HhcCChhHHHHHHHHHHhCCCccC
Q 038200 443 AVAGQWEDVARVRELMKKRRMGRM 466 (523)
Q Consensus 443 ~~~g~~~~A~~~~~~m~~~~~~~~ 466 (523)
...|+.+.|+..+-.|...+..++
T Consensus 34 a~~gdvd~aI~~LL~m~~~~~~~~ 57 (59)
T 1wgl_A 34 AQRGNKDAAINSLLQMGEEPSGPS 57 (59)
T ss_dssp TTTTCHHHHHHHHHHSSCCCCSCC
T ss_pred HcCCCHHHHHHHHHcCcCCCCCCC
Confidence 446778888888777766555444
No 355
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=23.27 E-value=1.1e+02 Score=23.80 Aligned_cols=53 Identities=11% Similarity=0.044 Sum_probs=35.6
Q ss_pred cccHHHHHHHHHhCCCchHHHHHHHHHHHC--CCCCCcccHHHHHHHHHccCCch
Q 038200 52 TFCVNAVIKAYSNSCVPDQGVVFYLQMIKN--GFMPNSYTFVSLFGSCAKTGCVE 104 (523)
Q Consensus 52 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~--~~~p~~~~~~~ll~~~~~~~~~~ 104 (523)
+.--..++..+...+.+-.|.++++.+.+. +...+..|.-.-++.+...|-+.
T Consensus 32 T~qR~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Glv~ 86 (162)
T 4ets_A 32 TKQREVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEMVT 86 (162)
T ss_dssp CHHHHHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTSEE
T ss_pred CHHHHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCEE
Confidence 334456677777777788888888888876 55556666666666666666443
No 356
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=22.43 E-value=2.3e+02 Score=23.06 Aligned_cols=23 Identities=4% Similarity=-0.045 Sum_probs=12.8
Q ss_pred HHHhcCCchHHHHHHHHHHHCCC
Q 038200 193 GYSKSGNPGCSLKLFREMMKSGF 215 (523)
Q Consensus 193 ~~~~~~~~~~a~~~~~~m~~~~~ 215 (523)
..+..|+.+-+..+++.+.+.|.
T Consensus 160 ~A~~~~~~~~~~~i~~~Ll~~g~ 182 (232)
T 2rfa_A 160 ILILQPNKTFACQMYNLLLSYDG 182 (232)
T ss_dssp HHHTCSCHHHHHHHHHHHHHTTC
T ss_pred HHHHcCChHHHHHHHHHHHhcCC
Confidence 33455666655555566666553
No 357
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=22.20 E-value=2.6e+02 Score=21.27 Aligned_cols=58 Identities=12% Similarity=0.167 Sum_probs=23.8
Q ss_pred HHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHcCCCCchHHHHHHhhhhhhcC
Q 038200 210 MMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQ 268 (523)
Q Consensus 210 m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 268 (523)
+.+.|++++..- ..++..+...+..-.|.++++.+.+.+...+..|..--++.+...|
T Consensus 18 l~~~g~r~T~qR-~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 75 (150)
T 2xig_A 18 IKKNGLKNSKQR-EEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKEN 75 (150)
T ss_dssp HHHCC--CHHHH-HHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTT
T ss_pred HHHcCCCCCHHH-HHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 344454433322 2233333333444455555555555544444433333334444443
No 358
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=21.41 E-value=1.7e+02 Score=22.26 Aligned_cols=45 Identities=13% Similarity=-0.054 Sum_probs=25.2
Q ss_pred HHHHHHHHhCCCchHHHHHHHHHHHCCCCCCcccHHHHHHHHHccC
Q 038200 56 NAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTG 101 (523)
Q Consensus 56 ~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~ 101 (523)
..++..+...+ .-.|.++++.+.+.+...+..|...-++.+...|
T Consensus 22 ~~Il~~l~~~~-h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 66 (145)
T 3eyy_A 22 QLVLEAVDTLE-HATPDDILGEVRKTASGINISTVYRTLELLEELG 66 (145)
T ss_dssp HHHHHHHHHHS-SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcC-CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCC
Confidence 34445555545 5667777777766654445555555555555444
No 359
>2keb_A DNA polymerase subunit alpha B; DNA polymerase alpha, DNA replication, nucleus, phosphoprote binding protein; HET: DNA; NMR {Homo sapiens}
Probab=21.31 E-value=2.2e+02 Score=19.99 Aligned_cols=57 Identities=14% Similarity=0.109 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHCCCCCCcccHHHHHHHHHccCCchHHHHHHHHH-----HHhCCCCCchHHHHH
Q 038200 70 QGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLA-----LKNGVDFELPVMNSL 128 (523)
Q Consensus 70 ~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~-----~~~~~~~~~~~~~~l 128 (523)
.|.++.+++...|+.|+......++..|...+- + +.++.++. ...|..|+....+.+
T Consensus 27 sae~L~eEfdefGi~~~d~VldKc~ELC~~y~l-d-a~e~VeeWmAFsts~~g~~pT~enL~~F 88 (101)
T 2keb_A 27 SAQQLAEELQIFGLDCEEALIEKLVELCVQYGQ-N-EEGMVGELIAFCTSTHKVGLTSEILNSF 88 (101)
T ss_dssp CHHHHHHHHHHHTCBCCHHHHHHHHHHHHHHTC-C-HHHHHHHHHHHHHHHTCSBCCHHHHHHH
T ss_pred cHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC-C-HHHHHHHHHHHHHhcCCCCCCHHHHHHH
Confidence 466677777778888888888888888876653 2 33322221 234666766665554
No 360
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=21.30 E-value=3e+02 Score=21.50 Aligned_cols=54 Identities=7% Similarity=-0.076 Sum_probs=35.1
Q ss_pred cCCChHHHHHHHHhCCCCCCCCCchHHHHHHHHH-H-----HHhcCCHHHHHHHHHHHhh
Q 038200 373 GAELTEEAEEILRKMPEDNDNMSFESIMWVSLLS-L-----CRFQGAVAMVERLAKSFVD 426 (523)
Q Consensus 373 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~-~-----~~~~g~~~~a~~~~~~~~~ 426 (523)
..|++=+|.+++++.-....+...+...|..||. . ..+.|+...|..++.++..
T Consensus 44 n~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 44 NSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp HTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred hCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3488888888888876432111114556666665 1 2456888888888888876
No 361
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=20.91 E-value=3.4e+02 Score=22.01 Aligned_cols=204 Identities=10% Similarity=0.034 Sum_probs=101.5
Q ss_pred HHHHHhCCCchHHHHHHHHHHHCCCCCCccc--HHHHHHHHHccCCchHHHHHHHHHHHhCCCCCchH--HHHHHHHHHc
Q 038200 59 IKAYSNSCVPDQGVVFYLQMIKNGFMPNSYT--FVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPV--MNSLINMYGC 134 (523)
Q Consensus 59 l~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~--~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~ 134 (523)
+...+..|+.+ +++.+.+.|..++... -.+.+...+..|+.+-+ +.+.+.|..++... -.+.+...+.
T Consensus 15 L~~A~~~g~~~----~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v----~~Ll~~g~~~~~~~~~g~t~L~~A~~ 86 (237)
T 3b7b_A 15 LHAAAEAGHVD----ICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAV----KYLIKAGALVDPKDAEGSTCLHLAAK 86 (237)
T ss_dssp HHHHHHHTCHH----HHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHH----HHHHTTTCCCCCCCTTSCCHHHHHHH
T ss_pred HHHHHHcCcHH----HHHHHHHcCCCcCccCCCCCCHHHHHHHhCCHHHH----HHHHhCCCCCCCCCCCCCcHHHHHHH
Confidence 34445556654 5555666665554421 12344445556765544 44455565443321 1234455566
Q ss_pred cCChHHHHHHHhhcC-C---CCcchHHHHHHHHHhcCCHHHHHHHHhcCCCC---ChhHHHHHHHHHHhcCCchHHHHHH
Q 038200 135 FGAMDCARNMFVQMS-P---RDLISWNSIVSGHVRSGDMSAAHELFDIMPER---NVVSWNIMISGYSKSGNPGCSLKLF 207 (523)
Q Consensus 135 ~g~~~~A~~~~~~~~-~---~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~ 207 (523)
.|+.+-+..+++.-. . ++...+ +.+...+..|+.+-+..+++.-..+ +..-.+. +...+..|+.+ ++
T Consensus 87 ~~~~~~~~~Ll~~~~~~~~~~~~~g~-t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~-L~~A~~~~~~~----~~ 160 (237)
T 3b7b_A 87 KGHYEVVQYLLSNGQMDVNCQDDGGW-TPMIWATEYKHVDLVKLLLSKGSDINIRDNEENIC-LHWAAFSGCVD----IA 160 (237)
T ss_dssp TTCHHHHHHHHTTTCCCTTCCCTTSC-CHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCH-HHHHHHHCCHH----HH
T ss_pred cCCHHHHHHHHhCCCCCcccCCCCCC-CHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCH-HHHHHHCCCHH----HH
Confidence 788888887777652 2 122222 2344455678888777777754432 2222222 23334456544 44
Q ss_pred HHHHHCCCCCCHHH--HHHHHHHHhccccHHHHHHHHHHHHHcCCCCchH--HHHHHhhhhhhcCChHHHHHHHHhc
Q 038200 208 REMMKSGFRGNDKT--MASVLTACGRSARFNEGRSVHGYTVRTSLKPNII--LDTALIDLYSKCQKVEVAQRVFDSM 280 (523)
Q Consensus 208 ~~m~~~~~~p~~~~--~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~a~~~~~~~ 280 (523)
+.+.+.|..++... -.+.+...++.|+.+- .+.+.+.|..++.. .-.+.+......|+...+.++.+.+
T Consensus 161 ~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~----v~~Ll~~gad~~~~d~~g~t~l~~A~~~~~~~~~~~l~~~l 233 (237)
T 3b7b_A 161 EILLAAKCDLHAVNIHGDSPLHIAARENRYDC----VVLFLSRDSDVTLKNKEGETPLQCASLNSQVWSALQMSKAL 233 (237)
T ss_dssp HHHHTTTCCTTCCCTTCCCHHHHHHHTTCHHH----HHHHHTTTCCTTCCCTTSCCHHHHSCTTCHHHHHHHHHHHH
T ss_pred HHHHHcCCCCCCcCCCCCCHHHHHHHhCCHhH----HHHHHHcCCCCCccCCCCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 55556665543221 1122333445566554 34445556554321 1123334445667777777766654
No 362
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=20.87 E-value=1.3e+02 Score=20.86 Aligned_cols=23 Identities=13% Similarity=0.197 Sum_probs=14.7
Q ss_pred hHHHHHHHHHhcCChhHHHHHHH
Q 038200 434 RYQFLLNVYAVAGQWEDVARVRE 456 (523)
Q Consensus 434 ~~~~l~~~~~~~g~~~~A~~~~~ 456 (523)
.+...+..+.+.|+|++|++..+
T Consensus 17 ~~~RrAe~ll~~gkydeAIech~ 39 (97)
T 2crb_A 17 QQSRRADRLLAAGKYEEAISCHR 39 (97)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HhhhHHHHHHhcCCHHHHHHHHH
Confidence 44556666777777777765544
No 363
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=20.79 E-value=3.4e+02 Score=22.03 Aligned_cols=73 Identities=11% Similarity=0.090 Sum_probs=41.7
Q ss_pred hHHHHHHHHhCCCCCCCCCchHHH-----HHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChhHH
Q 038200 377 TEEAEEILRKMPEDNDNMSFESIM-----WVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDV 451 (523)
Q Consensus 377 ~~~A~~~~~~~~~~~~~~~~~~~~-----~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A 451 (523)
++.|+.+|+.+.... .+-... -...+..|.+.|.+++|.+++++..+.++.+...-..|...-.+...+...
T Consensus 94 LESAl~v~~~I~~e~---~~lheei~~Llk~qAV~VCiekg~Fk~A~eiLkr~f~~~~~~~~lr~kL~~II~~Kd~~H~~ 170 (211)
T 3bqo_A 94 LESALMIWGSIEKEH---DKLHEEIQNLIKIQAIAVCMENGNFKEAEEVFERIFGDPNSHMPFKSKLLMIISQKDTFHSF 170 (211)
T ss_dssp HHHHHHHHTTSCSCC---CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHC-----CCTTHHHHHHHHHTTCTTCHH
T ss_pred HHHHHHHHHHHHHhc---ccHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHhcCCCCchHHHHHHHHHHHccCCCcHH
Confidence 478999999988542 111111 122334689999999999999998876665444444555444444444433
Q ss_pred H
Q 038200 452 A 452 (523)
Q Consensus 452 ~ 452 (523)
+
T Consensus 171 l 171 (211)
T 3bqo_A 171 F 171 (211)
T ss_dssp H
T ss_pred H
Confidence 3
No 364
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=20.79 E-value=3.1e+02 Score=21.49 Aligned_cols=49 Identities=2% Similarity=-0.131 Sum_probs=26.4
Q ss_pred HHHHHhhccCCchhHHHHhccCCCC---CcccHHHHHHHHHhCCCchHHHHHH
Q 038200 26 NLLKHSADFGSPDYTVLVFKCINNP---GTFCVNAVIKAYSNSCVPDQGVVFY 75 (523)
Q Consensus 26 ~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~ll~~~~~~~~~~~a~~~~ 75 (523)
..+...++.|+++-+..+++.-..+ +...++.+ ...+..|+.+-+..++
T Consensus 41 t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l-~~A~~~~~~~~~~~Ll 92 (201)
T 3hra_A 41 TPLNIAVHNNDIEIAKALIDRGADINLQNSISDSPY-LYAGAQGRTEILAYML 92 (201)
T ss_dssp CHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHH-HHHHHTTCHHHHHHHH
T ss_pred CHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHH-HHHHHcCCHHHHHHHH
Confidence 3444556778888777777754433 22233333 3345566655444443
No 365
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=20.67 E-value=2.9e+02 Score=21.75 Aligned_cols=91 Identities=12% Similarity=0.057 Sum_probs=49.7
Q ss_pred hhccCCchhHHHHhccCCC-CC-cccHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCccc---HHHHHHHHHc-cCCch
Q 038200 31 SADFGSPDYTVLVFKCINN-PG-TFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYT---FVSLFGSCAK-TGCVE 104 (523)
Q Consensus 31 ~~~~g~~~~A~~~~~~~~~-~~-~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~---~~~ll~~~~~-~~~~~ 104 (523)
.++.|+++....++..-.. .+ ..-+ +.+...+..|+.+.-.++.+.+++.|..++... .+.|..++.. ..+..
T Consensus 13 Aa~~g~~~~~~~l~~~~~~~~~~~~g~-T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~TpLh~a~~~~~~~~~ 91 (186)
T 3t8k_A 13 AAMLGTYEDFLELFEKGYEDKESVLKS-NILYDVLRNNNDEARYKISMFLINKGADIKSRTKEGTTLFFPLFQGGGNDIT 91 (186)
T ss_dssp HHHHSCHHHHHHHHHHSSSCHHHHHTT-THHHHHTTCSCHHHHHHHHHHHHHTTCCSSCCCTTCCCTHHHHHHHCTTCHH
T ss_pred HHHcCCHHHHHHHHhcCcccccccCCC-CHHHHHHHcCCcchHHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCcchh
Confidence 3567888877777765331 11 1122 334445566666666777788888887666532 2223322221 22333
Q ss_pred HHHHHHHHHHHhCCCCCc
Q 038200 105 RGGMCHGLALKNGVDFEL 122 (523)
Q Consensus 105 ~a~~~~~~~~~~~~~~~~ 122 (523)
...++.+.+++.|..++.
T Consensus 92 ~~~~iv~~Ll~~Gadin~ 109 (186)
T 3t8k_A 92 GTTELCKIFLEKGADITA 109 (186)
T ss_dssp HHHHHHHHHHHTTCCSSS
T ss_pred hHHHHHHHHHHCCCCCCc
Confidence 445667777777766554
No 366
>4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=20.35 E-value=5e+02 Score=23.75 Aligned_cols=58 Identities=12% Similarity=0.123 Sum_probs=30.7
Q ss_pred HHHHHhhcCcHHHHHHHHHHhhHhcCC---------------CCChHHHHHHHHHHHcCCChHHHHHHHHhCC
Q 038200 331 VICACVRAELLTEGRKYFRQMIDFYKI---------------KPNFAHYWCMANLYAGAELTEEAEEILRKMP 388 (523)
Q Consensus 331 ll~~~~~~~~~~~a~~~~~~~~~~~~~---------------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 388 (523)
++.++....+.+++.++++.+.....- .+-......++..|...|+.++|..++++..
T Consensus 82 ~~~~~~~~~d~~~al~~L~~~~~~~~~~~~~~~~~~~~~~~~ea~l~i~~~i~~~yl~~~d~~~a~~~l~~~~ 154 (393)
T 4b4t_O 82 LLASLKDSKDFDESLKYLDDLKAQFQELDSKKQRNNGSKDHGDGILLIDSEIARTYLLKNDLVKARDLLDDLE 154 (393)
T ss_dssp THHHHHHTTCHHHHHHHHHHHTTTSHHHHSSCCCCCCSSSSCCSHHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHhhcCCHHHHHHHHHHHHHHHhhhhhhhhcccchhhhhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 344555666777777777776663100 1112233344555556666666666665553
No 367
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=20.34 E-value=1.6e+02 Score=21.79 Aligned_cols=46 Identities=9% Similarity=0.048 Sum_probs=34.1
Q ss_pred HHHHHHHccCCchHHHHHHHHHHHhCCCCCchHHHHHHHHHHccCC
Q 038200 92 SLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGA 137 (523)
Q Consensus 92 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 137 (523)
.++..+...+..-.|.++++.+.+.++..+..|.-..++.+...|-
T Consensus 15 ~Il~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gl 60 (131)
T 2o03_A 15 AISTLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSGL 60 (131)
T ss_dssp HHHHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTTS
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCC
Confidence 4566666667778899999999888777777776666777777664
No 368
>2ko4_A Mediator of RNA polymerase II transcription subun; GAL11, mediator, activator, CO-activator, MED15, trans nucleus, phosphoprotein, transcription regulation; NMR {Saccharomyces cerevisiae} PDB: 2lpb_A
Probab=20.28 E-value=1.9e+02 Score=19.27 Aligned_cols=39 Identities=10% Similarity=0.026 Sum_probs=23.4
Q ss_pred HHHHhccCC--CCCcccHHHHHHHHHhCCCchHHHHHHHHH
Q 038200 40 TVLVFKCIN--NPGTFCVNAVIKAYSNSCVPDQGVVFYLQM 78 (523)
Q Consensus 40 A~~~~~~~~--~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m 78 (523)
-..++++++ .|++.+|+-+...+-+..-..+++.+.+++
T Consensus 22 P~~LL~kIPnLPpgVnTW~qI~el~qkk~i~~~~m~iik~i 62 (81)
T 2ko4_A 22 PKQLLQRIPNIPPNINTWQQVTALAQQKLLTPQDMEAAKEV 62 (81)
T ss_dssp CHHHHTTSSSCCTTTCBHHHHHHHHTTTSSCHHHHHHHHHH
T ss_pred CHHHHhhCCCCCCCcchHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 345666666 477778877666555554445555555443
No 369
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=20.25 E-value=1.4e+02 Score=22.39 Aligned_cols=45 Identities=9% Similarity=0.088 Sum_probs=23.6
Q ss_pred HHHHHHHhCC-CchHHHHHHHHHHHCCCCCCcccHHHHHHHHHccC
Q 038200 57 AVIKAYSNSC-VPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTG 101 (523)
Q Consensus 57 ~ll~~~~~~~-~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~ 101 (523)
.++..+...+ .+-.|.++++.+.+.+...+..|...-++.+...|
T Consensus 22 ~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 67 (136)
T 1mzb_A 22 KILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAG 67 (136)
T ss_dssp HHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCC
Confidence 4455555554 55666666666666554444444444444444444
Done!