Query 038201
Match_columns 201
No_of_seqs 152 out of 887
Neff 6.2
Searched_HMMs 46136
Date Fri Mar 29 08:37:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038201.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/038201hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd07816 Bet_v1-like Ligand-bin 100.0 3.1E-28 6.6E-33 193.9 18.3 116 52-168 3-123 (148)
2 PF00407 Bet_v_1: Pathogenesis 99.9 2.2E-24 4.7E-29 173.3 17.4 118 52-170 6-128 (151)
3 cd07821 PYR_PYL_RCAR_like Pyra 99.7 7E-16 1.5E-20 117.2 17.3 136 53-193 4-140 (140)
4 PF10604 Polyketide_cyc2: Poly 99.7 3.9E-14 8.5E-19 107.7 20.7 136 49-193 1-139 (139)
5 cd08866 SRPBCC_11 Ligand-bindi 99.6 2.7E-13 5.8E-18 105.0 17.3 136 54-194 3-144 (144)
6 cd08861 OtcD1_ARO-CYC_like N-t 99.4 5.6E-12 1.2E-16 97.3 14.9 136 54-194 3-142 (142)
7 cd08865 SRPBCC_10 Ligand-bindi 99.4 2.5E-11 5.4E-16 91.8 16.6 134 54-194 3-140 (140)
8 cd08862 SRPBCC_Smu440-like Lig 99.3 4.2E-10 9.1E-15 85.7 16.5 132 53-193 4-137 (138)
9 cd07819 SRPBCC_2 Ligand-bindin 99.3 4.6E-10 9.9E-15 85.6 16.7 132 52-190 4-138 (140)
10 cd07818 SRPBCC_1 Ligand-bindin 99.3 9.5E-10 2.1E-14 85.7 17.4 139 51-194 3-150 (150)
11 cd07813 COQ10p_like Coenzyme Q 99.3 2E-10 4.3E-15 88.8 13.3 133 54-193 3-136 (138)
12 cd07814 SRPBCC_CalC_Aha1-like 99.2 5.9E-10 1.3E-14 84.8 14.5 135 53-194 3-139 (139)
13 cd07817 SRPBCC_8 Ligand-bindin 99.2 9.9E-10 2.2E-14 83.8 15.0 131 53-193 3-138 (139)
14 cd07812 SRPBCC START/RHO_alpha 99.2 3.1E-09 6.8E-14 77.9 16.2 110 54-168 3-114 (141)
15 cd07822 SRPBCC_4 Ligand-bindin 99.2 2.9E-09 6.3E-14 80.7 15.7 135 53-195 3-139 (141)
16 cd07825 SRPBCC_7 Ligand-bindin 99.1 3.3E-09 7.2E-14 81.9 13.2 136 53-193 3-144 (144)
17 cd08860 TcmN_ARO-CYC_like N-te 99.1 6.4E-09 1.4E-13 82.8 14.7 137 53-196 4-146 (146)
18 cd07824 SRPBCC_6 Ligand-bindin 98.9 1.8E-07 3.8E-12 73.3 16.0 133 55-196 6-143 (146)
19 PF03364 Polyketide_cyc: Polyk 98.9 6.4E-08 1.4E-12 73.6 12.4 125 58-188 1-129 (130)
20 cd05018 CoxG Carbon monoxide d 98.8 3.9E-07 8.4E-12 69.6 14.4 131 53-191 4-142 (144)
21 cd07820 SRPBCC_3 Ligand-bindin 98.7 2.1E-06 4.6E-11 66.4 16.3 108 53-167 2-114 (137)
22 PRK10724 hypothetical protein; 98.5 1.3E-05 2.8E-10 64.8 16.0 137 51-198 16-153 (158)
23 cd08893 SRPBCC_CalC_Aha1-like_ 98.4 2.2E-05 4.8E-10 59.5 14.1 128 53-193 3-135 (136)
24 cd08899 SRPBCC_CalC_Aha1-like_ 98.4 1.4E-05 3.1E-10 63.6 13.1 126 51-195 12-138 (157)
25 cd08898 SRPBCC_CalC_Aha1-like_ 98.4 1.9E-05 4.2E-10 60.6 13.4 132 53-193 4-144 (145)
26 cd07823 SRPBCC_5 Ligand-bindin 98.4 3.1E-05 6.8E-10 60.5 14.7 104 55-164 4-113 (146)
27 cd08894 SRPBCC_CalC_Aha1-like_ 98.2 7.6E-05 1.6E-09 57.9 13.3 133 52-193 2-138 (139)
28 COG3427 Carbon monoxide dehydr 98.1 6.9E-05 1.5E-09 60.2 12.5 104 55-164 6-112 (146)
29 cd07826 SRPBCC_CalC_Aha1-like_ 98.1 0.00024 5.1E-09 55.5 14.6 138 52-193 2-141 (142)
30 cd08900 SRPBCC_CalC_Aha1-like_ 98.1 0.00034 7.3E-09 54.4 15.1 135 53-193 3-142 (143)
31 PF06240 COXG: Carbon monoxide 98.0 7.8E-05 1.7E-09 58.4 10.1 104 55-164 2-108 (140)
32 cd08896 SRPBCC_CalC_Aha1-like_ 98.0 0.00047 1E-08 53.9 14.5 130 53-193 3-145 (146)
33 cd08895 SRPBCC_CalC_Aha1-like_ 98.0 0.0011 2.3E-08 51.8 16.5 107 52-161 2-118 (146)
34 cd08876 START_1 Uncharacterize 97.9 0.0032 6.8E-08 51.3 18.7 140 50-191 41-193 (195)
35 cd08897 SRPBCC_CalC_Aha1-like_ 97.7 0.0019 4.1E-08 49.6 13.2 123 53-193 3-132 (133)
36 COG5637 Predicted integral mem 97.7 0.0013 2.8E-08 54.7 12.6 139 46-195 66-211 (217)
37 cd08891 SRPBCC_CalC Ligand-bin 97.6 0.0026 5.7E-08 49.8 13.4 101 53-161 3-114 (149)
38 PF08327 AHSA1: Activator of H 97.3 0.0036 7.9E-08 46.5 9.6 122 59-193 1-124 (124)
39 COG3832 Uncharacterized conser 97.2 0.012 2.7E-07 46.7 12.3 101 51-155 9-111 (149)
40 cd08892 SRPBCC_Aha1 Putative h 97.2 0.028 6.1E-07 42.9 13.8 121 53-193 3-125 (126)
41 cd08901 SRPBCC_CalC_Aha1-like_ 97.1 0.019 4.1E-07 44.3 12.2 127 53-194 3-132 (136)
42 PF08982 DUF1857: Domain of un 97.0 0.021 4.6E-07 45.9 11.9 125 61-199 19-148 (149)
43 cd08863 SRPBCC_DUF1857 DUF1857 96.9 0.12 2.6E-06 41.3 15.7 64 61-131 18-82 (141)
44 COG4276 Uncharacterized conser 96.6 0.18 4E-06 40.2 14.2 126 54-185 6-143 (153)
45 COG2867 Oligoketide cyclase/li 96.1 0.14 3.1E-06 41.1 11.4 136 53-198 5-141 (146)
46 PTZ00220 Activator of HSP-90 A 95.4 0.2 4.3E-06 38.8 9.6 89 58-159 1-91 (132)
47 cd08905 START_STARD1-like Chol 94.9 1.1 2.4E-05 37.4 13.2 143 51-194 50-208 (209)
48 cd08903 START_STARD5-like Lipi 94.5 2.5 5.3E-05 35.3 15.2 141 52-194 48-207 (208)
49 cd00177 START Lipid-binding ST 94.5 1.9 4.1E-05 33.9 16.9 152 36-193 25-189 (193)
50 cd08868 START_STARD1_3_like Ch 94.3 2.6 5.6E-05 34.9 16.3 158 36-195 35-208 (208)
51 cd08877 START_2 Uncharacterize 94.2 2.5 5.5E-05 35.1 13.8 155 35-194 31-214 (215)
52 PF10698 DUF2505: Protein of u 94.1 2.2 4.7E-05 34.1 12.7 104 54-163 3-126 (159)
53 cd08871 START_STARD10-like Lip 93.9 3.3 7.2E-05 34.6 18.0 140 55-196 52-204 (222)
54 cd08869 START_RhoGAP C-termina 93.9 3.2 7E-05 34.3 13.9 137 52-193 46-195 (197)
55 cd08906 START_STARD3-like Chol 93.7 3.7 8E-05 34.4 17.1 157 36-194 36-208 (209)
56 cd08911 START_STARD7-like Lipi 93.3 4.1 9E-05 33.9 14.5 134 57-192 53-204 (207)
57 cd08873 START_STARD14_15-like 92.7 3 6.5E-05 36.0 12.1 133 52-198 79-227 (235)
58 cd08874 START_STARD9-like C-te 92.1 6.6 0.00014 33.0 15.7 116 55-172 50-183 (205)
59 smart00234 START in StAR and p 90.7 7.8 0.00017 31.4 15.3 143 50-194 45-202 (206)
60 cd08870 START_STARD2_7-like Li 90.6 8.9 0.00019 31.8 16.2 136 54-192 54-206 (209)
61 cd08867 START_STARD4_5_6-like 87.9 14 0.0003 30.4 15.5 116 52-171 48-183 (206)
62 cd08908 START_STARD12-like C-t 82.7 28 0.00061 29.3 14.0 135 52-193 54-202 (204)
63 cd08914 START_STARD15-like Lip 79.8 39 0.00086 29.2 11.7 112 50-164 78-205 (236)
64 cd08904 START_STARD6-like Lipi 76.1 46 0.00099 27.9 14.4 139 50-189 46-200 (204)
65 cd08913 START_STARD14-like Lip 74.5 56 0.0012 28.2 12.8 37 53-90 84-121 (240)
66 KOG2936 Uncharacterized conser 70.4 28 0.0006 31.3 8.1 121 46-184 169-292 (301)
67 cd08910 START_STARD2-like Lipi 69.1 66 0.0014 26.7 15.1 151 37-192 36-204 (207)
68 PF01852 START: START domain; 62.3 79 0.0017 25.3 17.1 115 52-171 48-178 (206)
69 cd08902 START_STARD4-like Lipi 57.5 1.2E+02 0.0026 25.7 14.1 119 54-173 51-182 (202)
70 cd08909 START_STARD13-like C-t 55.9 1.2E+02 0.0027 25.5 13.7 135 55-193 57-203 (205)
71 PF05586 Ant_C: Anthrax recept 31.9 40 0.00087 25.1 2.2 37 38-78 40-77 (95)
72 KOG3177 Oligoketide cyclase/li 30.0 3.6E+02 0.0079 23.2 10.4 142 47-195 66-211 (227)
73 PF00028 Cadherin: Cadherin do 23.8 2.2E+02 0.0048 19.5 4.9 24 110-133 13-39 (93)
74 COG0231 Efp Translation elonga 23.0 1.2E+02 0.0026 23.7 3.6 33 95-134 49-81 (131)
No 1
>cd07816 Bet_v1-like Ligand-binding bet_v_1 domain of major pollen allergen of white birch (Betula verrucosa), Bet v 1, and related proteins. This family includes the ligand binding domain of Bet v 1 (the major pollen allergen of white birch, Betula verrucosa) and related proteins. In addition to birch Bet v 1, this family includes other plant intracellular pathogenesis-related class 10 (PR-10) proteins, norcoclaurine synthases (NCSs), cytokinin binding proteins (CSBPs), major latex proteins (MLPs), and ripening-related proteins. It belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Members of this family binds a diverse range of ligands. Bet v 1 can bind brassinosteroids, cytokinins, flavonoids and fatty acids. Hyp-1, a PR-10 from Hypericum perforatum/St. John's wort, catalyzes the condensation of two molecules of emodin to the bioactive naphthodianth
Probab=99.96 E-value=3.1e-28 Score=193.91 Aligned_cols=116 Identities=19% Similarity=0.320 Sum_probs=106.4
Q ss_pred EEEEEEEcCChHHHHHHHhCCCC--CccccccceEEEEecCCCCCCeEEEEEEecCCCcceeEEEEeeecCCCcEEEEEE
Q 038201 52 SYAVQTINAPLPAVWSVVRRFDN--PQAYKHFLKSCHVINGDGHVGTLREVHVISGLPAANSTERLEILDDEHHVLSFSV 129 (201)
Q Consensus 52 s~v~~~I~ApadkVW~vv~dF~~--pk~~p~~V~s~e~~eGdg~vGsvR~vt~~~G~p~~~v~ERL~~lDde~~~~sY~v 129 (201)
...+++|+||+|+||+++++|++ ++.|+|+|++|++++|+|++||||.|+|.+|++..+++|||+++|+++|+|+|++
T Consensus 3 ~~~e~~i~a~ad~vW~~~~~~~~~~~~~~~p~v~~~~~~eG~~~~GsvR~~~~~~~~~~~~~kE~l~~~D~~~~~~~y~v 82 (148)
T cd07816 3 LEHEVELKVPAEKLWKAFVLDSHLLPPKLPPVIKSVELLEGDGGPGSIKLITFGPGGKVKYVKERIDAVDEENKTYKYTV 82 (148)
T ss_pred EEEEEEecCCHHHHHHHHhcChhhccccccccccEEEEEecCCCCceEEEEEEcCCCcceEEEEEEEEEcccccEEEEEE
Confidence 35679999999999999999994 8889999999999999999999999999988777799999999999999999999
Q ss_pred EecccC---CCCeeEEEEEEeecCCCceEEEEEEEeeCCCCC
Q 038201 130 IGGDHR---LNNYRSVTTLHASPCGTGTVVVESYVCDVPPGN 168 (201)
Q Consensus 130 veg~~~---~~~Y~ati~v~p~~~~~~T~v~Ws~~~d~p~g~ 168 (201)
++|+.+ +++|+++++|.|.+ +++|++.|++.|++.++.
T Consensus 83 veg~~~~~~~~~y~~t~~v~~~~-~~~t~v~Wt~~ye~~~~~ 123 (148)
T cd07816 83 IEGDVLKDGYKSYKVEIKFVPKG-DGGCVVKWTIEYEKKGDA 123 (148)
T ss_pred EecccccCceEEEEEEEEEEECC-CCCEEEEEEEEEEECCCC
Confidence 999984 99999999999984 578999999999977664
No 2
>PF00407 Bet_v_1: Pathogenesis-related protein Bet v I family; InterPro: IPR000916 Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Aln g 1, Api g 1, Bet v 1, Car b 1, Cor a 1, Dau c 1, Mal d 1 and Pru a 1. Trees within the order Fagales possess particularly potent allergens, e.g. Bet v1, the major White Birch (Betula verrucosa) pollen antigen. Bet v1 is the main cause of type I allergies observed in early spring. Type I, or immunoglobulin E-mediated (IgE-mediated) allergies affect 1 in 5 people in Europe and North America. Commonly-observed symptoms are hay fever, dermatitis, asthma and, in severe cases, anaphylactic shock. First contact with these allergens results in sensitisation; subsequent contact produces a cross-linking reaction of IgE on mast cells and concomitant release of histamine. The inevitable symptoms of an allergic reaction ensue. Recent NMR analysis [] has confirmed earlier predictions of the protein structure and site of the major T-cell epitope []. The Bet v1 protein comprises 6 anti-parallel beta-strands and 3 alpha-helices. Four of the strands dominate the global fold, and 2 of the helices form a C-terminal amphipathic helical motif. This motif is believed to be the T-cell epitope. Other proteins belonging to this family include the major pollen allergens: Aln g I from Alnus glutinosa (Alder); Api G I from Apium graveolens (Celery); Car b I from Carpinus betulus (European hornbeam); Cor a I from Corylus avellana (European hazel); Mal d I from Malus domestica (Apple). The motif is also found in: the wound-induced protein AoPR1 from Asparagus officinalis (Garden asparagus); pathogenesis-related proteins from Phaseolus vulgaris (Kidney bean) and Petroselinum crispum (Parsley) (PR1-1 and PR1-3); the disease resistance response proteins, STH-2 and STH-21, from Solanum tuberosum (Potato) and pI49, pI176 and DRRG49-C from Pisum sativum (Garden pea); the P. sativum abscisic acid-responsive proteins ABR17 and ABR18; and the stress-induced protein SAM22 from Glycine max (Soybean). ; GO: 0006952 defense response, 0009607 response to biotic stimulus; PDB: 1IFV_A 4A8V_A 4A8U_A 2K7H_A 2QIM_A 3E85_A 1H2O_A 1E09_A 1QMR_A 1FSK_D ....
Probab=99.93 E-value=2.2e-24 Score=173.28 Aligned_cols=118 Identities=20% Similarity=0.363 Sum_probs=104.0
Q ss_pred EEEEEEEcCChHHHHHHHhCCCC--CccccccceEEEEecCCCCCC-eEEEEEEecCCCcceeEEEEeeecCCCcEEEEE
Q 038201 52 SYAVQTINAPLPAVWSVVRRFDN--PQAYKHFLKSCHVINGDGHVG-TLREVHVISGLPAANSTERLEILDDEHHVLSFS 128 (201)
Q Consensus 52 s~v~~~I~ApadkVW~vv~dF~~--pk~~p~~V~s~e~~eGdg~vG-svR~vt~~~G~p~~~v~ERL~~lDde~~~~sY~ 128 (201)
...++++++||+++|++++..++ |++.|++|+++++++|||++| |||.|+|..|+|...+|||++.+|+++++++|+
T Consensus 6 ~~~E~~~~~~a~k~~ka~~~~~~llpki~P~~i~sve~~eGdgg~gGSIk~~~f~~~~~~~~~Kekve~~D~~~~~~~y~ 85 (151)
T PF00407_consen 6 LEVEVEVKVSADKLWKAFKSSPHLLPKILPHVIKSVEVVEGDGGPGGSIKKWTFGPGGPFKYVKEKVEAIDEENKTITYT 85 (151)
T ss_dssp EEEEEEESS-HHHHHHHHTTHHHHHHHHSTTTEEEEEEEESSSSTTT-EEEEEEETTSSEEEEEEEEEEEETTTTEEEEE
T ss_pred EEEEEEecCCHHHHHHHHhcCccchhhhChhhceeEEEEccCCCCCCeEEEEEecCCCCcceeEEEEEeecCCCcEEEEE
Confidence 45678999999999999998655 999999999999999999777 999999999999889999999999999999999
Q ss_pred EEecccC--CCCeeEEEEEEeecCCCceEEEEEEEeeCCCCCCH
Q 038201 129 VIGGDHR--LNNYRSVTTLHASPCGTGTVVVESYVCDVPPGNTR 170 (201)
Q Consensus 129 vveg~~~--~~~Y~ati~v~p~~~~~~T~v~Ws~~~d~p~g~~~ 170 (201)
++||+.+ ++.|.+++++.|.+ +++|++.|+..|+...+..+
T Consensus 86 viEGd~l~~~~~~~~~~~~~~~~-~g~~v~k~t~~Ye~~~~~~~ 128 (151)
T PF00407_consen 86 VIEGDVLGDYKSFKSTIQKIPKG-DGGCVVKWTIEYEKKGEDVP 128 (151)
T ss_dssp EEEETTGTTTEEEEEEEEEEEET-TSCEEEEEEEEEEESSTSCH
T ss_pred EEeccccccEEEEEEEEEecCCC-CCceEEEEEEEEEecCCCCC
Confidence 9999974 78899999999886 45699999999997666653
No 3
>cd07821 PYR_PYL_RCAR_like Pyrabactin resistance 1 (PYR1), PYR1-like (PYL), regulatory component of abscisic acid receptors (RCARs), and related proteins. The PYR/PYL/RCAR-like family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. PYR/PYL/RCAR plant proteins are receptors involved in signal transduction. They bind abscisic acid (ABA) and mediate its signaling. ABA is a vital plant hormone, which regulates plant growth, development, and response to environmental stresses. Upon binding ABA, these plant proteins interact with a type 2C protein phosphatase (PP2C), such as ABI1 and ABI2, and inhibit their activity. When ABA is bound, a loop (designated the gate/CL2 loop) closes over the ligand binding pocket, resulting in the weakening of the inactive PYL dimer and facilitating type 2C protein phosphatase binding. In the ABA:PYL1:ABI1 complex, the gate
Probab=99.72 E-value=7e-16 Score=117.21 Aligned_cols=136 Identities=28% Similarity=0.416 Sum_probs=114.7
Q ss_pred EEEEEEcCChHHHHHHHhCCCC-CccccccceEEEEecCCCCCCeEEEEEEecCCCcceeEEEEeeecCCCcEEEEEEEe
Q 038201 53 YAVQTINAPLPAVWSVVRRFDN-PQAYKHFLKSCHVINGDGHVGTLREVHVISGLPAANSTERLEILDDEHHVLSFSVIG 131 (201)
Q Consensus 53 ~v~~~I~ApadkVW~vv~dF~~-pk~~p~~V~s~e~~eGdg~vGsvR~vt~~~G~p~~~v~ERL~~lDde~~~~sY~vve 131 (201)
..+++|+||+++||+++.|+.+ ++|+ +.+.++++.+++.++|+++.+++..| ..+++++..+|+.++.+.|++.+
T Consensus 4 ~~~~~i~a~~~~V~~~l~d~~~~~~w~-~~~~~~~~~~~~~~~g~~~~~~~~~g---~~~~~~i~~~~~~~~~i~~~~~~ 79 (140)
T cd07821 4 TVSVTIDAPADKVWALLSDFGGLHKWH-PAVASCELEGGGPGVGAVRTVTLKDG---GTVRERLLALDDAERRYSYRIVE 79 (140)
T ss_pred EEEEEECCCHHHHHHHHhCcCchhhhc-cCcceEEeecCCCCCCeEEEEEeCCC---CEEEEEehhcCccCCEEEEEecC
Confidence 4678999999999999999999 7655 56788888766446899999999876 57889999999887899999999
Q ss_pred cccCCCCeeEEEEEEeecCCCceEEEEEEEeeCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 038201 132 GDHRLNNYRSVTTLHASPCGTGTVVVESYVCDVPPGNTREETCTFVDTIVRCNLQSLAQISE 193 (201)
Q Consensus 132 g~~~~~~Y~ati~v~p~~~~~~T~v~Ws~~~d~p~g~~~e~~~~~v~~i~~~~L~~La~~~e 193 (201)
|+.++.++.+++++.|.+ +++|.+.|+..|+++.+........++...+..+|+.|++.++
T Consensus 80 ~~~~~~~~~~~~~~~~~~-~~~t~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~~~ 140 (140)
T cd07821 80 GPLPVKNYVATIRVTPEG-DGGTRVTWTAEFDPPEGLTDELARAFLTGVYRAGLAALKAALE 140 (140)
T ss_pred CCCCcccceEEEEEEECC-CCccEEEEEEEEecCCCcchHHHHHHHHHHHHHHHHHHHHhhC
Confidence 877788999999999975 4579999999999875555567778888889999999998764
No 4
>PF10604 Polyketide_cyc2: Polyketide cyclase / dehydrase and lipid transport; InterPro: IPR019587 This family contains polyketide cylcases/dehydrases which are enzymes involved in polyketide synthesis. It also includes other proteins of the START superfamily []. ; PDB: 3QRZ_C 3CNW_A 3P9V_A 3OQU_B 3NEF_B 3JRQ_B 3KAY_A 3JRS_A 3KDJ_A 3NMN_C ....
Probab=99.67 E-value=3.9e-14 Score=107.65 Aligned_cols=136 Identities=23% Similarity=0.262 Sum_probs=107.9
Q ss_pred ceeEEEEEEEcCChHHHHHHHhCCCC-CccccccceEEEEecCCCCCCeEEEEEEecCCCcceeEEEEeeecCCCcEEEE
Q 038201 49 QCCSYAVQTINAPLPAVWSVVRRFDN-PQAYKHFLKSCHVINGDGHVGTLREVHVISGLPAANSTERLEILDDEHHVLSF 127 (201)
Q Consensus 49 ~~~s~v~~~I~ApadkVW~vv~dF~~-pk~~p~~V~s~e~~eGdg~vGsvR~vt~~~G~p~~~v~ERL~~lDde~~~~sY 127 (201)
++....++.|+||+++||+++.|+.+ ++|+ +.+.++++.+++ ++|..+.++.... ..++++++.+|++++.+.|
T Consensus 1 M~~~~~~~~v~a~~e~V~~~l~d~~~~~~w~-~~~~~~~~~~~~-~~~~~~~~~~~g~---~~~~~~i~~~~~~~~~~~~ 75 (139)
T PF10604_consen 1 MFKVEVSIEVPAPPEAVWDLLSDPENWPRWW-PGVKSVELLSGG-GPGTERTVRVAGR---GTVREEITEYDPEPRRITW 75 (139)
T ss_dssp -EEEEEEEEESS-HHHHHHHHTTTTGGGGTS-TTEEEEEEEEEC-STEEEEEEEECSC---SEEEEEEEEEETTTTEEEE
T ss_pred CEEEEEEEEECCCHHHHHHHHhChhhhhhhh-hceEEEEEcccc-ccceeEEEEeccc---cceeEEEEEecCCCcEEEE
Confidence 35667889999999999999999999 6655 688999987634 3466677775431 4789999999988999999
Q ss_pred EEEecccCCCCeeEEEEEEeecCCCceEEEEEEEeeC-CCCCC-HHHHHHHHHHHHHHHHHHHHHHHH
Q 038201 128 SVIGGDHRLNNYRSVTTLHASPCGTGTVVVESYVCDV-PPGNT-REETCTFVDTIVRCNLQSLAQISE 193 (201)
Q Consensus 128 ~vveg~~~~~~Y~ati~v~p~~~~~~T~v~Ws~~~d~-p~g~~-~e~~~~~v~~i~~~~L~~La~~~e 193 (201)
.+. ..++.++..++++.|.+ ++|.|.|++.+++ +.+.. ...+..++...++..|+.|++.+|
T Consensus 76 ~~~--~~~~~~~~~~~~~~~~~--~gt~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~E 139 (139)
T PF10604_consen 76 RFV--PSGFTNGTGRWRFEPVG--DGTRVTWTVEFEPGLPGWLAGPLLRPAVKRIVREALENLKRAAE 139 (139)
T ss_dssp EEE--SSSSCEEEEEEEEEEET--TTEEEEEEEEEEESCTTSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEE--ecceeEEEEEEEEEEcC--CCEEEEEEEEEEEeccchhhHHHHHHHHHHHHHHHHHHHhcccC
Confidence 997 55677899999999986 4599999999884 33443 455778888899999999999887
No 5
>cd08866 SRPBCC_11 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.58 E-value=2.7e-13 Score=104.95 Aligned_cols=136 Identities=18% Similarity=0.213 Sum_probs=101.4
Q ss_pred EEEEEcCChHHHHHHHhCCCC-CccccccceEEEEecCCCCCCeEEEEEEecC-----CCcceeEEEEeeecCCCcEEEE
Q 038201 54 AVQTINAPLPAVWSVVRRFDN-PQAYKHFLKSCHVINGDGHVGTLREVHVISG-----LPAANSTERLEILDDEHHVLSF 127 (201)
Q Consensus 54 v~~~I~ApadkVW~vv~dF~~-pk~~p~~V~s~e~~eGdg~vGsvR~vt~~~G-----~p~~~v~ERL~~lDde~~~~sY 127 (201)
.++.|+||++.||+++.||++ |+|+ |.+++|+++++.+ .+.........+ .. ..+..++.+.|+.++.++|
T Consensus 3 ~~~~i~a~~~~Vw~~l~D~~~~~~w~-p~v~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~i~~ 79 (144)
T cd08866 3 ARVRVPAPPETVWAVLTDYDNLAEFI-PNLAESRLLERNG-NRVVLEQTGKQGILFFKFE-ARVVLELREREEFPRELDF 79 (144)
T ss_pred EEEEECCCHHHHHHHHhChhhHHhhC-cCceEEEEEEcCC-CEEEEEEeeeEEEEeeeee-EEEEEEEEEecCCCceEEE
Confidence 478999999999999999999 8866 6788998876543 121111110011 11 2445567777776899999
Q ss_pred EEEecccCCCCeeEEEEEEeecCCCceEEEEEEEeeCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038201 128 SVIGGDHRLNNYRSVTTLHASPCGTGTVVVESYVCDVPPGNTREETCTFVDTIVRCNLQSLAQISEN 194 (201)
Q Consensus 128 ~vveg~~~~~~Y~ati~v~p~~~~~~T~v~Ws~~~d~p~g~~~e~~~~~v~~i~~~~L~~La~~~e~ 194 (201)
++++|+ +..|.++.++.|.+++++|.+.|...+++..+.....+..+++..+...|++|++.+|+
T Consensus 80 ~~~~g~--~~~~~g~w~~~~~~~~~~t~v~~~~~~~~~~~~p~~l~~~~~~~~~~~~l~~lr~~ae~ 144 (144)
T cd08866 80 EMVEGD--FKRFEGSWRLEPLADGGGTLLTYEVEVKPDFFAPVFLVEFVLRQDLPTNLLAIRAEAES 144 (144)
T ss_pred EEcCCc--hhceEEEEEEEECCCCCeEEEEEEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 999885 68999999999986436899999999997666666777778888888889999888774
No 6
>cd08861 OtcD1_ARO-CYC_like N-terminal and C-terminal aromatase/cyclase domains of Streptomyces rimosus OtcD1 and related domains. This family includes the N- and C- terminal aromatase/cyclase (ARO/CYC) domains of Streptomyces rimosus OtcD1 and related domains. It belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. ARO/CYC domains participate in the diversification of aromatic polyketides by promoting polyketide cyclization. They occur in two architectural forms, didomain and monodomain. Didomain aromatase/cyclases (ARO/CYCs), contain two ARO/CYC domains, and are associated with C7-C12 first ring cyclized polyketides. Streptomyces rimosus OtcD1 is a didomain ARO/CYC. The polyketide Oxytetracycline (OTC) is a broad spectrum antibiotic made by Streptomyces rimosus. The gene encoding OtcD1 is part of oxytetracycline (OTC) gene cluster. Disruption of this
Probab=99.44 E-value=5.6e-12 Score=97.28 Aligned_cols=136 Identities=18% Similarity=0.140 Sum_probs=98.2
Q ss_pred EEEEEcCChHHHHHHHhCCCC-CccccccceEEEEecCCCCCCeEEEEEEe-cCCCcceeEEEEeeecCCCcEEEEEEEe
Q 038201 54 AVQTINAPLPAVWSVVRRFDN-PQAYKHFLKSCHVINGDGHVGTLREVHVI-SGLPAANSTERLEILDDEHHVLSFSVIG 131 (201)
Q Consensus 54 v~~~I~ApadkVW~vv~dF~~-pk~~p~~V~s~e~~eGdg~vGsvR~vt~~-~G~p~~~v~ERL~~lDde~~~~sY~vve 131 (201)
-+++|+||+++||+++.||.+ |+|. |. .+++.+++++....++.+... .|.. ...+....+|++.+.+.|..++
T Consensus 3 ~s~~i~ap~~~V~~~l~D~~~~p~~~-p~-~~~~~~~~~~~~~~~~~~~~~~~g~~--~~~~~~~~~~~~~~~i~~~~~~ 78 (142)
T cd08861 3 HSVTVAAPAEDVYDLLADAERWPEFL-PT-VHVERLELDGGVERLRMWATAFDGSV--HTWTSRRVLDPEGRRIVFRQEE 78 (142)
T ss_pred EEEEEcCCHHHHHHHHHhHHhhhccC-CC-ceEEEEEEcCCEEEEEEEEEcCCCcE--EEEEEEEEEcCCCCEEEEEEee
Confidence 468999999999999999999 8844 54 455544433211235545554 3322 2224455678889999999998
Q ss_pred cccCCCCeeEEEEEEeecCCCceEEEEEEEeeCCC--CCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038201 132 GDHRLNNYRSVTTLHASPCGTGTVVVESYVCDVPP--GNTREETCTFVDTIVRCNLQSLAQISEN 194 (201)
Q Consensus 132 g~~~~~~Y~ati~v~p~~~~~~T~v~Ws~~~d~p~--g~~~e~~~~~v~~i~~~~L~~La~~~e~ 194 (201)
+..++..+.+..++.|.+ +++|.|.|...|++.. ......++.++...+...|.+||+.+|+
T Consensus 79 ~~~~~~~~~g~w~~~~~~-~~~t~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lk~~~E~ 142 (142)
T cd08861 79 PPPPVASMSGEWRFEPLG-GGGTRVTLRHDFTLGIDSPEAVPWIRRALDRNSRAELAALRAAAER 142 (142)
T ss_pred CCCChhhheeEEEEEECC-CCcEEEEEEEEEEECCCCchhHHHHHHHHccccHHHHHHHHHHhhC
Confidence 766789999999999985 4679999998887642 2445566777777788899999998874
No 7
>cd08865 SRPBCC_10 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.41 E-value=2.5e-11 Score=91.84 Aligned_cols=134 Identities=16% Similarity=0.069 Sum_probs=96.4
Q ss_pred EEEEEcCChHHHHHHHhCCCC-CccccccceEEEEecCC-CCCCeEEEEEEecCCCcceeEEEEeeecCCCcEEEEEEEe
Q 038201 54 AVQTINAPLPAVWSVVRRFDN-PQAYKHFLKSCHVINGD-GHVGTLREVHVISGLPAANSTERLEILDDEHHVLSFSVIG 131 (201)
Q Consensus 54 v~~~I~ApadkVW~vv~dF~~-pk~~p~~V~s~e~~eGd-g~vGsvR~vt~~~G~p~~~v~ERL~~lDde~~~~sY~vve 131 (201)
.++.|+||+++||+++.||.+ ++|++ .+.+++...++ .++|+...+....++....++++++..| .++.+.|...+
T Consensus 3 ~~~~i~ap~~~Vw~~l~d~~~~~~w~~-~~~~~~~~~~~~~~~g~~~~~~~~~~g~~~~~~~~v~~~~-p~~~~~~~~~~ 80 (140)
T cd08865 3 ESIVIERPVEEVFAYLADFENAPEWDP-GVVEVEKITDGPVGVGTRYHQVRKFLGRRIELTYEITEYE-PGRRVVFRGSS 80 (140)
T ss_pred eEEEEcCCHHHHHHHHHCccchhhhcc-CceEEEEcCCCCCcCccEEEEEEEecCceEEEEEEEEEec-CCcEEEEEecC
Confidence 568999999999999999999 78665 66778776443 3678888887654322235788999887 55789999876
Q ss_pred cccCCCCeeEEEEEEeecCCCceEEEEEEEeeCCCC--CCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038201 132 GDHRLNNYRSVTTLHASPCGTGTVVVESYVCDVPPG--NTREETCTFVDTIVRCNLQSLAQISEN 194 (201)
Q Consensus 132 g~~~~~~Y~ati~v~p~~~~~~T~v~Ws~~~d~p~g--~~~e~~~~~v~~i~~~~L~~La~~~e~ 194 (201)
++ ..+..++++.|.+ ++|.+.|+..++.+.- .....+...+...++..|+.|++.+|+
T Consensus 81 ~~---~~~~~~~~~~~~~--~~t~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lk~~~e~ 140 (140)
T cd08865 81 GP---FPYEDTYTFEPVG--GGTRVRYTAELEPGGFARLLDPLMAPAFRRRARAALENLKALLEA 140 (140)
T ss_pred CC---cceEEEEEEEEcC--CceEEEEEEEEccchhHHHHHHHHHHHHhhhhHHHHHHHHHHhhC
Confidence 63 2478889999864 4799999988886221 112234445555667778888887763
No 8
>cd08862 SRPBCC_Smu440-like Ligand-binding SRPBCC domain of Streptococcus mutans Smu.440 and related proteins. This family includes the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of Streptococcus mutans Smu.440 and related proteins. This domain belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Streptococcus mutans is a dental pathogen, and the leading cause of dental caries. In this pathogen, the gene encoding Smu.440 is in the same operon as the gene encoding SMU.441, a member of the MarR protein family of transcriptional regulators involved in multiple antibiotic resistance. It has been suggested that SMU.440 is involved in polyketide-like antibiotic resistance.
Probab=99.29 E-value=4.2e-10 Score=85.74 Aligned_cols=132 Identities=18% Similarity=0.127 Sum_probs=94.7
Q ss_pred EEEEEEcCChHHHHHHHhCCCC-CccccccceEEEEecCCCCCCeEEEEEEecCCCcceeEEEEeeecCCCcEEEEEEEe
Q 038201 53 YAVQTINAPLPAVWSVVRRFDN-PQAYKHFLKSCHVINGDGHVGTLREVHVISGLPAANSTERLEILDDEHHVLSFSVIG 131 (201)
Q Consensus 53 ~v~~~I~ApadkVW~vv~dF~~-pk~~p~~V~s~e~~eGdg~vGsvR~vt~~~G~p~~~v~ERL~~lDde~~~~sY~vve 131 (201)
..+++|+||+++||+++.||.+ ++|+ +.++++++..+..++|+...++...+ ..+..++.++++. +.++|....
T Consensus 4 ~~~~~i~Ap~~~Vw~~~~d~~~~~~w~-~~~~~~~~~~~~~~~G~~~~~~~~~~---~~~~~~i~~~~p~-~~~~~~~~~ 78 (138)
T cd08862 4 EATIVIDAPPERVWAVLTDVENWPAWT-PSVETVRLEGPPPAVGSSFKMKPPGL---VRSTFTVTELRPG-HSFTWTGPA 78 (138)
T ss_pred EEEEEEcCCHHHHHHHHHhhhhccccc-CcceEEEEecCCCCCCcEEEEecCCC---CceEEEEEEecCC-CEEEEEecC
Confidence 4678999999999999999999 7755 57888988644326787666665433 3567788888854 468887544
Q ss_pred cccCCCCeeEEEEEEeecCCCceEEEEEEEeeCCCC-CCHHHHHHHHHHHHHHHHHHHHHHHH
Q 038201 132 GDHRLNNYRSVTTLHASPCGTGTVVVESYVCDVPPG-NTREETCTFVDTIVRCNLQSLAQISE 193 (201)
Q Consensus 132 g~~~~~~Y~ati~v~p~~~~~~T~v~Ws~~~d~p~g-~~~e~~~~~v~~i~~~~L~~La~~~e 193 (201)
. ...+..++++.+.+ +++|.+.+.+++..|.. .....+...++..++..|+.|++.+|
T Consensus 79 ~---~~~~~~~~~~~~~~-~~~t~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lk~~~E 137 (138)
T cd08862 79 P---GISAVHRHEFEAKP-DGGVRVTTSESLSGPLAFLFGLFVGKKLRALLPEWLEGLKAAAE 137 (138)
T ss_pred C---CEEEEEEEEEEEcC-CCcEEEEEEEEeecchHHHHHHHHHHHHHhhHHHHHHHHHHHhc
Confidence 2 34556788888864 46899999988875432 12235556677778888888888776
No 9
>cd07819 SRPBCC_2 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.29 E-value=4.6e-10 Score=85.57 Aligned_cols=132 Identities=16% Similarity=0.078 Sum_probs=85.4
Q ss_pred EEEEEEEcCChHHHHHHHhCCCC-CccccccceEEEEecC-CCCCCeEEEEEEecCCCcceeEEEEeeec-CCCcEEEEE
Q 038201 52 SYAVQTINAPLPAVWSVVRRFDN-PQAYKHFLKSCHVING-DGHVGTLREVHVISGLPAANSTERLEILD-DEHHVLSFS 128 (201)
Q Consensus 52 s~v~~~I~ApadkVW~vv~dF~~-pk~~p~~V~s~e~~eG-dg~vGsvR~vt~~~G~p~~~v~ERL~~lD-de~~~~sY~ 128 (201)
...++.|+||+++||+++.|+.+ |+|+ |.+.++++.++ +++.+....+++..++ ...+-+..++ ++.+.++|+
T Consensus 4 v~~s~~i~ap~e~V~~~l~D~~~~~~w~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~i~~~ 79 (140)
T cd07819 4 VSREFEIEAPPAAVMDVLADVEAYPEWS-PKVKSVEVLLRDNDGRPEMVRIGVGAYG---IKDTYALEYTWDGAGSVSWT 79 (140)
T ss_pred EEEEEEEeCCHHHHHHHHhChhhhhhhC-cceEEEEEeccCCCCCEEEEEEEEeeee---EEEEEEEEEEEcCCCcEEEE
Confidence 45678999999999999999999 7766 57889988654 3333334445554331 1112122222 226789999
Q ss_pred EEecccCCCCeeEEEEEEeecCCCceEEEEEEEeeCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 038201 129 VIGGDHRLNNYRSVTTLHASPCGTGTVVVESYVCDVPPGNTREETCTFVDTIVRCNLQSLAQ 190 (201)
Q Consensus 129 vveg~~~~~~Y~ati~v~p~~~~~~T~v~Ws~~~d~p~g~~~e~~~~~v~~i~~~~L~~La~ 190 (201)
..+|. +...+....++.|.+ ++|.|.|+..+++.-....-....+.+.+....+++|++
T Consensus 80 ~~~~~-~~~~~~~~~~~~~~~--~~t~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 138 (140)
T cd07819 80 LVEGE-GNRSQEGSYTLTPKG--DGTRVTFDLTVELTVPLPGFLKRKAEPLVLDEALKGLKK 138 (140)
T ss_pred Eeccc-ceeEEEEEEEEEECC--CCEEEEEEEEEEecCCCCHHHHHHhhhHHHHHHHHhHhh
Confidence 99876 567888899999975 379999998888533333333444444444444555544
No 10
>cd07818 SRPBCC_1 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.26 E-value=9.5e-10 Score=85.67 Aligned_cols=139 Identities=14% Similarity=0.026 Sum_probs=93.5
Q ss_pred eEEEEEEEcCChHHHHHHHhCCCC-Cccccccce--EEEEe--cCCCCCCeEEEEEEecCCCcceeEEEEeeecCCCcEE
Q 038201 51 CSYAVQTINAPLPAVWSVVRRFDN-PQAYKHFLK--SCHVI--NGDGHVGTLREVHVISGLPAANSTERLEILDDEHHVL 125 (201)
Q Consensus 51 ~s~v~~~I~ApadkVW~vv~dF~~-pk~~p~~V~--s~e~~--eGdg~vGsvR~vt~~~G~p~~~v~ERL~~lDde~~~~ 125 (201)
....++.|+||+++||+++.|+.+ |+|.|.+.. .+... +++.++|+...++...+ ......++..+++ ++.+
T Consensus 3 ~~~~s~~I~ap~e~V~~~i~D~~~~~~W~p~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~--~~~~~~~v~~~~p-~~~i 79 (150)
T cd07818 3 RVERSIVINAPPEEVFPYVNDLKNWPEWSPWEKLDPDMKRTYSGPDSGVGASYSWEGNDK--VGEGEMEITESVP-NERI 79 (150)
T ss_pred EEEEEEEEeCCHHHHHHHHhCcccCcccCchhhcCcceEEEecCCCCCCCeEEEEecCCc--ccceEEEEEecCC-CcEE
Confidence 456789999999999999999999 887543221 23221 23346888877776542 1233456777764 6689
Q ss_pred EEEEEecccCCCCeeEEEEEEeecCCCceEEEEEEEeeCCCCCC----HHHHHHHHHHHHHHHHHHHHHHHHH
Q 038201 126 SFSVIGGDHRLNNYRSVTTLHASPCGTGTVVVESYVCDVPPGNT----REETCTFVDTIVRCNLQSLAQISEN 194 (201)
Q Consensus 126 sY~vveg~~~~~~Y~ati~v~p~~~~~~T~v~Ws~~~d~p~g~~----~e~~~~~v~~i~~~~L~~La~~~e~ 194 (201)
.|.+..++.....+..++++.|.+ ++|.+.|++.++.+.+.- .......++..+...|+.|++.+|+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~--~gT~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lk~~~E~ 150 (150)
T cd07818 80 EYELRFIKPFEATNDVEFTLEPVG--GGTKVTWGMSGELPFPLKLMYLFLDMDKMIGKDFEKGLANLKAVLEK 150 (150)
T ss_pred EEEEEecCCccccceEEEEEEEcC--CceEEEEEEEecCCchHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhC
Confidence 999986443224778999999983 579999999998764422 1223344555566677888877764
No 11
>cd07813 COQ10p_like Coenzyme Q-binding protein COQ10p and similar proteins. Coenzyme Q-binding protein COQ10p and similar proteins. COQ10p is a hydrophobic protein located in the inner membrane of mitochondria that binds coenzyme Q (CoQ), also called ubiquinone, which is an essential electron carrier of the respiratory chain. Deletion of the gene encoding COQ10p (COQ10 or YOL008W) in Saccharomyces cerevisiae results in respiratory defect because of the inability to oxidize NADH and succinate. COQ10p may function in the delivery of CoQ (Q6 in budding yeast) to its proper location for electron transport. The human homolog, called Q-binding protein COQ10 homolog A (COQ10A), is able to fully complement for the absence of COQ10p in fission yeast. Human COQ10A also has a splice variant COQ10B. COQ10p belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and the
Probab=99.25 E-value=2e-10 Score=88.76 Aligned_cols=133 Identities=10% Similarity=0.094 Sum_probs=93.9
Q ss_pred EEEEEcCChHHHHHHHhCCCC-CccccccceEEEEecCCCCCCeEEEEEEecCCCcceeEEEEeeecCCCcEEEEEEEec
Q 038201 54 AVQTINAPLPAVWSVVRRFDN-PQAYKHFLKSCHVINGDGHVGTLREVHVISGLPAANSTERLEILDDEHHVLSFSVIGG 132 (201)
Q Consensus 54 v~~~I~ApadkVW~vv~dF~~-pk~~p~~V~s~e~~eGdg~vGsvR~vt~~~G~p~~~v~ERL~~lDde~~~~sY~vveg 132 (201)
-++.|+||++.||+++.|+++ |+|+ |.+.+++++++++ .+....+.+.-++-...+..++. +|+ ++.+++..++|
T Consensus 3 ~s~~i~ap~~~v~~~i~D~~~~~~~~-p~~~~~~vl~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~i~~~~~~g 78 (138)
T cd07813 3 KSRLVPYSAEQMFDLVADVERYPEFL-PWCTASRVLERDE-DELEAELTVGFGGIRESFTSRVT-LVP-PESIEAELVDG 78 (138)
T ss_pred EEEEcCCCHHHHHHHHHHHHhhhhhc-CCccccEEEEcCC-CEEEEEEEEeeccccEEEEEEEE-ecC-CCEEEEEecCC
Confidence 368899999999999999999 8866 6788998887654 34445555543322224445554 665 66889998888
Q ss_pred ccCCCCeeEEEEEEeecCCCceEEEEEEEeeCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 038201 133 DHRLNNYRSVTTLHASPCGTGTVVVESYVCDVPPGNTREETCTFVDTIVRCNLQSLAQISE 193 (201)
Q Consensus 133 ~~~~~~Y~ati~v~p~~~~~~T~v~Ws~~~d~p~g~~~e~~~~~v~~i~~~~L~~La~~~e 193 (201)
+++.+.+..++.|.+ +++|.|.+...|+++-+...-.+..+++...+..|+++.+.++
T Consensus 79 --~~~~~~g~w~~~p~~-~~~T~v~~~~~~~~~~~l~~~l~~~~~~~~~~~~l~~f~~~~~ 136 (138)
T cd07813 79 --PFKHLEGEWRFKPLG-ENACKVEFDLEFEFKSRLLEALAGLVFDEVAKKMVDAFEKRAK 136 (138)
T ss_pred --ChhhceeEEEEEECC-CCCEEEEEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 468889999999986 4689999999999753323334455555555555666655544
No 12
>cd07814 SRPBCC_CalC_Aha1-like Putative hydrophobic ligand-binding SRPBCC domain of Micromonospora echinospora CalC, human Aha1, and related proteins. This family includes the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of Micromonospora echinospora CalC, human Aha1, and related proteins. Proteins in this group belong to the SRPBCC domain superfamily of proteins, which bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. MeCalC confers resistance to the enediyne, calicheamicin gamma 1 (CLM), by a self sacrificing mechanism which results in inactivation of both CalC and the highly reactive diradical enediyne species. MeCalC can also inactivate two other enediynes, shishijimicin and namenamicin. A crucial Gly of the MeCalC CLM resistance mechanism is not conserved in this subgroup. This family also includes the C-terminal, Bet v1-like domain of Aha1, one of several co-chaperones, which regulate the dimeric chaperone Hsp90. Aha1 promotes dimer
Probab=99.22 E-value=5.9e-10 Score=84.85 Aligned_cols=135 Identities=13% Similarity=0.036 Sum_probs=91.6
Q ss_pred EEEEEEcCChHHHHHHHhCCCC-CccccccceEEEEecCCCCCCeEEEEEEecCCCcceeEEEEeeecCCCcEEEEEEEe
Q 038201 53 YAVQTINAPLPAVWSVVRRFDN-PQAYKHFLKSCHVINGDGHVGTLREVHVISGLPAANSTERLEILDDEHHVLSFSVIG 131 (201)
Q Consensus 53 ~v~~~I~ApadkVW~vv~dF~~-pk~~p~~V~s~e~~eGdg~vGsvR~vt~~~G~p~~~v~ERL~~lDde~~~~sY~vve 131 (201)
..+++|+||++.||+++.|+.+ ++|+++ +..++.....| |+.+.+....++....+..++..+|+. +.+.|+...
T Consensus 3 ~~s~~I~a~~~~Vw~~l~d~~~~~~w~~~-~~~~~~~~~~G--g~~~~~~~~~~g~~~~~~~~i~~~~~~-~~i~~~~~~ 78 (139)
T cd07814 3 TIEREFDAPPELVWRALTDPELLAQWFGP-TTTAEMDLRVG--GRWFFFMTGPDGEEGWVSGEVLEVEPP-RRLVFTWAF 78 (139)
T ss_pred EEEEEecCCHHHHHHHcCCHHHHHhhhCc-CCceEEcccCC--ceEEEEEECCCCCEEeccEEEEEEcCC-CeEEEEecc
Confidence 4678999999999999999999 998876 32333221222 666655543322223678889989855 689999998
Q ss_pred ccc-CCCCeeEEEEEEeecCCCceEEEEEEEeeCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038201 132 GDH-RLNNYRSVTTLHASPCGTGTVVVESYVCDVPPGNTREETCTFVDTIVRCNLQSLAQISEN 194 (201)
Q Consensus 132 g~~-~~~~Y~ati~v~p~~~~~~T~v~Ws~~~d~p~g~~~e~~~~~v~~i~~~~L~~La~~~e~ 194 (201)
++. ....+...+++.|.+ ++|.+.|...+..+... ......-+..-+...|+.|++.+|+
T Consensus 79 ~~~~~~~~~~~~~~~~~~~--~~T~v~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~lk~~~E~ 139 (139)
T cd07814 79 SDETPGPETTVTVTLEETG--GGTRLTLTHSGFPEEDA-EQEAREGMEEGWTGTLDRLKALLEK 139 (139)
T ss_pred cCCCCCCceEEEEEEEECC--CCEEEEEEEEccChHhH-HHHHHhCHhhHHHHHHHHHHHHhhC
Confidence 764 356678888898875 57999999877654321 2222233344556677888888774
No 13
>cd07817 SRPBCC_8 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.21 E-value=9.9e-10 Score=83.76 Aligned_cols=131 Identities=18% Similarity=0.257 Sum_probs=90.2
Q ss_pred EEEEEEcCChHHHHHHHhCCCC-CccccccceEEEEecCCCCCCeEEEEEEecCCCcceeEEEEeeecCCCcEEEEEEEe
Q 038201 53 YAVQTINAPLPAVWSVVRRFDN-PQAYKHFLKSCHVINGDGHVGTLREVHVISGLPAANSTERLEILDDEHHVLSFSVIG 131 (201)
Q Consensus 53 ~v~~~I~ApadkVW~vv~dF~~-pk~~p~~V~s~e~~eGdg~vGsvR~vt~~~G~p~~~v~ERL~~lDde~~~~sY~vve 131 (201)
..+++|+||+++||+++.|+.+ |+|++ .+.++++..|. +.-..+.+..|.. .....++..+++ ++.+.|....
T Consensus 3 ~~~i~I~ap~e~V~~~~~D~~~~~~w~~-~~~~~~~~~~~---~~~~~~~~~~g~~-~~~~~~v~~~~~-~~~i~~~~~~ 76 (139)
T cd07817 3 EKSITVNVPVEEVYDFWRDFENLPRFMS-HVESVEQLDDT---RSHWKAKGPAGLS-VEWDAEITEQVP-NERIAWRSVE 76 (139)
T ss_pred eEEEEeCCCHHHHHHHHhChhhhHHHhh-hhcEEEEcCCC---ceEEEEecCCCCc-EEEEEEEeccCC-CCEEEEEECC
Confidence 3468999999999999999999 88765 67888876431 2222233333432 244555555544 5569998877
Q ss_pred cccCCCCeeEEEEEEeecCCCceEEEEEEEeeCCCCCCH----HHHHHHHHHHHHHHHHHHHHHHH
Q 038201 132 GDHRLNNYRSVTTLHASPCGTGTVVVESYVCDVPPGNTR----EETCTFVDTIVRCNLQSLAQISE 193 (201)
Q Consensus 132 g~~~~~~Y~ati~v~p~~~~~~T~v~Ws~~~d~p~g~~~----e~~~~~v~~i~~~~L~~La~~~e 193 (201)
|. + .+..+.++.|.+ +++|.+.+...|+++.+... ......++..++.+|+.||+.+|
T Consensus 77 ~~--~-~~~~~~~f~~~~-~~~T~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lk~~aE 138 (139)
T cd07817 77 GA--D-PNAGSVRFRPAP-GRGTRVTLTIEYEPPGGAEGAAVAGLLGGEPERQLREDLRRFKQLVE 138 (139)
T ss_pred CC--C-CcceEEEEEECC-CCCeEEEEEEEEECCcchhhhhHHHHhhhhHHHHHHHHHHHHHHHhh
Confidence 64 3 677888998875 46899999999997654332 23445556667788888888876
No 14
>cd07812 SRPBCC START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC (SRPBCC) ligand-binding domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket; they bind diverse ligands. Included in this superfamily are the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, and the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), as well as the SRPBCC domains of phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of this superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.19 E-value=3.1e-09 Score=77.89 Aligned_cols=110 Identities=25% Similarity=0.232 Sum_probs=83.6
Q ss_pred EEEEEcCChHHHHHHHhCCCC-CccccccceEEEEecCC-CCCCeEEEEEEecCCCcceeEEEEeeecCCCcEEEEEEEe
Q 038201 54 AVQTINAPLPAVWSVVRRFDN-PQAYKHFLKSCHVINGD-GHVGTLREVHVISGLPAANSTERLEILDDEHHVLSFSVIG 131 (201)
Q Consensus 54 v~~~I~ApadkVW~vv~dF~~-pk~~p~~V~s~e~~eGd-g~vGsvR~vt~~~G~p~~~v~ERL~~lDde~~~~sY~vve 131 (201)
.++.|+||+++||+++.|+.+ ++|++ .+.++++.++. ...|....+.+..+ .......++..+++ +..++|.+.+
T Consensus 3 ~~~~i~a~~~~v~~~l~d~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~-~~~~~~~~~~ 79 (141)
T cd07812 3 ASIEIPAPPEAVWDLLSDPERWPEWSP-GLERVEVLGGGEGGVGARFVGGRKGG-RRLTLTSEVTEVDP-PRPGRFRVTG 79 (141)
T ss_pred EEEEeCCCHHHHHHHHhChhhhhhhCc-ccceEEEcCCCCccceeEEEEEecCC-ccccceEEEEEecC-CCceEEEEec
Confidence 578999999999999999999 77665 57777776543 36677766666422 12356788888876 6789999998
Q ss_pred cccCCCCeeEEEEEEeecCCCceEEEEEEEeeCCCCC
Q 038201 132 GDHRLNNYRSVTTLHASPCGTGTVVVESYVCDVPPGN 168 (201)
Q Consensus 132 g~~~~~~Y~ati~v~p~~~~~~T~v~Ws~~~d~p~g~ 168 (201)
++.. ..+..+.++.+.+ +++|.+.|++.++++...
T Consensus 80 ~~~~-~~~~~~~~~~~~~-~~~t~v~~~~~~~~~~~~ 114 (141)
T cd07812 80 GGGG-VDGTGEWRLEPEG-DGGTRVTYTVEYDPPGPL 114 (141)
T ss_pred CCCC-cceeEEEEEEECC-CCcEEEEEEEEEecCCcc
Confidence 8765 6888889999875 348999999998876543
No 15
>cd07822 SRPBCC_4 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.17 E-value=2.9e-09 Score=80.71 Aligned_cols=135 Identities=16% Similarity=0.105 Sum_probs=89.8
Q ss_pred EEEEEEcCChHHHHHHHhCCCC-CccccccceEEEEecCCCCCCeEEEEEEecC-CCcceeEEEEeeecCCCcEEEEEEE
Q 038201 53 YAVQTINAPLPAVWSVVRRFDN-PQAYKHFLKSCHVINGDGHVGTLREVHVISG-LPAANSTERLEILDDEHHVLSFSVI 130 (201)
Q Consensus 53 ~v~~~I~ApadkVW~vv~dF~~-pk~~p~~V~s~e~~eGdg~vGsvR~vt~~~G-~p~~~v~ERL~~lDde~~~~sY~vv 130 (201)
..++.|+||+++||+++.|+.+ ++|+ +.+..++... ..+|+...+.+..+ +......+++..+|+ .+.+.|+..
T Consensus 3 ~~~~~i~ap~~~Vw~~~~d~~~~~~w~-~~~~~~~~~~--~~~G~~~~~~~~~~~~~~~~~~~~v~~~~p-~~~~~~~~~ 78 (141)
T cd07822 3 STEIEINAPPEKVWEVLTDFPSYPEWN-PFVRSATGLS--LALGARLRFVVKLPGGPPRSFKPRVTEVEP-PRRLAWRGG 78 (141)
T ss_pred EEEEEecCCHHHHHHHHhccccccccC-hhheeEeccc--cCCCCEEEEEEeCCCCCcEEEEEEEEEEcC-CCEeEEEec
Confidence 4578999999999999999999 7776 4556665321 35677777776543 233467788998886 568999988
Q ss_pred ecccCCCCeeEEEEEEeecCCCceEEEEEEEeeCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038201 131 GGDHRLNNYRSVTTLHASPCGTGTVVVESYVCDVPPGNTREETCTFVDTIVRCNLQSLAQISENM 195 (201)
Q Consensus 131 eg~~~~~~Y~ati~v~p~~~~~~T~v~Ws~~~d~p~g~~~e~~~~~v~~i~~~~L~~La~~~e~~ 195 (201)
.++.....+..+.++.|.+ +++|.+.|...+..+.. .....++...++.+++.+-+.+++.
T Consensus 79 ~~~~~~~~~~~~~~~~~~~-~~~T~~~~~~~~~g~~~---~~~~~~~~~~~~~~~~~~~~~L~~~ 139 (141)
T cd07822 79 LPFPGLLDGEHSFELEPLG-DGGTRFVHRETFSGLLA---PLVLLGLGRDLRAGFEAMNEALKAR 139 (141)
T ss_pred CCCCcEeeEEEEEEEEEcC-CCcEEEEEeeEEEEEEh---HHhhhhhHHHHhHhHHHHHHHHHHh
Confidence 7765444566788888864 46899999876653221 1222344455555555554444443
No 16
>cd07825 SRPBCC_7 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.09 E-value=3.3e-09 Score=81.89 Aligned_cols=136 Identities=18% Similarity=0.209 Sum_probs=85.5
Q ss_pred EEEEEEcCChHHHHHHHhCCCC-Cccccc-cceEEEEecC--CCCCCeEEEEEEec-CCCcceeEEEEeeecCCCcEEEE
Q 038201 53 YAVQTINAPLPAVWSVVRRFDN-PQAYKH-FLKSCHVING--DGHVGTLREVHVIS-GLPAANSTERLEILDDEHHVLSF 127 (201)
Q Consensus 53 ~v~~~I~ApadkVW~vv~dF~~-pk~~p~-~V~s~e~~eG--dg~vGsvR~vt~~~-G~p~~~v~ERL~~lDde~~~~sY 127 (201)
.+++.|+||+++||+++.||.+ |+|++. .+..+ ..+ +-.+|+...+.+.. |++ ..+..++..+|+. +.++|
T Consensus 3 ~~~~~i~ap~e~Vw~~l~d~~~~~~W~~~~~~~~~--~~~~~~~~~G~~~~~~~~~~g~~-~~~~~~v~~~~p~-~~l~~ 78 (144)
T cd07825 3 SVSRTVDAPAEAVFAVLADPRRHPEIDGSGTVREA--IDGPRILAVGDVFRMAMRLDGGP-YRITNHVVAFEEN-RLIAW 78 (144)
T ss_pred EEEEEEeCCHHHHHHHHhCccccceeCCCCccccc--cCCCccCCCCCEEEEEEEcCCCc-eEEEEEEEEECCC-CEEEE
Confidence 5689999999999999999999 998853 22222 223 23788888777654 333 3566678877764 46899
Q ss_pred EEEecccCCCCeeEEEEEEeecCCCceEEEEEEEeeCCCCCCH-HHHHHHHHHHHHHHHHHHHHHHH
Q 038201 128 SVIGGDHRLNNYRSVTTLHASPCGTGTVVVESYVCDVPPGNTR-EETCTFVDTIVRCNLQSLAQISE 193 (201)
Q Consensus 128 ~vveg~~~~~~Y~ati~v~p~~~~~~T~v~Ws~~~d~p~g~~~-e~~~~~v~~i~~~~L~~La~~~e 193 (201)
+....+.+......++++.|.+ +++|.+.....|+....... .........-.+..|+.|++.+|
T Consensus 79 ~~~~~~~~~~~~~~~~~l~~~~-~g~T~vt~~~~~~g~~~~~~~~~~~~~~~~g~~~~l~~L~~~~~ 144 (144)
T cd07825 79 RPGPAGQEPGGHRWRWELEPIG-PGRTRVTETYDWSAVTDLKELLGFPAFPEVQLEASLDRLATLAE 144 (144)
T ss_pred EccCCCCCCCceeEEEEEEECC-CCcEEEEEEEeccCChhhhhccccCCCCHHHHHHHHHHHHHHhC
Confidence 8642222334455677888764 46799999988775432100 00111123334566777776654
No 17
>cd08860 TcmN_ARO-CYC_like N-terminal aromatase/cyclase domain of the multifunctional protein tetracenomycin (TcmN) and related domains. This family includes the N-terminal aromatase/cyclase (ARO/CYC) domain of Streptomyces glaucescens TcmN, and related domains. It belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. ARO/CYC domains participate in the diversification of aromatic polyketides by promoting polyketide cyclization. They occur in two architectural forms, monodomain and didomain. Monodomain aromatase/cyclases have a single ARO/CYC domain. For some, such as TcmN, this single domain is linked to a second domain of unrelated function. TcmN is a multifunctional cyclase-dehydratase-O-methyl transferase. Its N-terminal ARO/CYC domain participates in polyketide binding and catalysis; it promotes C9-C14 first-ring (and C7-C16 second-ring) cyclizations.
Probab=99.08 E-value=6.4e-09 Score=82.76 Aligned_cols=137 Identities=19% Similarity=0.201 Sum_probs=94.4
Q ss_pred EEEEEEcCChHHHHHHHhCCCC-CccccccceEEEEecCCC-CCCeEEE-EEEecCCCcceeEEEEeeecCCCcEEEEE-
Q 038201 53 YAVQTINAPLPAVWSVVRRFDN-PQAYKHFLKSCHVINGDG-HVGTLRE-VHVISGLPAANSTERLEILDDEHHVLSFS- 128 (201)
Q Consensus 53 ~v~~~I~ApadkVW~vv~dF~~-pk~~p~~V~s~e~~eGdg-~vGsvR~-vt~~~G~p~~~v~ERL~~lDde~~~~sY~- 128 (201)
.-+++|+||++.||+++.|+.+ |.|. +.++++++.+.++ +.|.--. +....|.+..+..|+. +|...+++.+.
T Consensus 4 ~~si~i~a~~~~v~~lvaDv~~~P~~~-~~~~~~~~l~~~~~~~~~r~~i~~~~~g~~~~w~s~~~--~~~~~~~i~~~~ 80 (146)
T cd08860 4 DNSIVIDAPLDLVWDMTNDIATWPDLF-SEYAEAEVLEEDGDTVRFRLTMHPDANGTVWSWVSERT--LDPVNRTVRARR 80 (146)
T ss_pred eeEEEEcCCHHHHHHHHHhhhhhhhhc-cceEEEEEEEecCCeEEEEEEEEeccCCEEEEEEEEEE--ecCCCcEEEEEE
Confidence 3578999999999999999999 9966 5677787765432 4442211 2222343333333432 78888888874
Q ss_pred EEecccCCCCeeEEEEEEeecCCCceEEEEEEEeeCCCC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038201 129 VIGGDHRLNNYRSVTTLHASPCGTGTVVVESYVCDVPPG--NTREETCTFVDTIVRCNLQSLAQISENMA 196 (201)
Q Consensus 129 vveg~~~~~~Y~ati~v~p~~~~~~T~v~Ws~~~d~p~g--~~~e~~~~~v~~i~~~~L~~La~~~e~~~ 196 (201)
..+ .++......-++.|.+ ++|.|.+...|+.+.+ .........++..++..|++|++.+|+.|
T Consensus 81 ~~~--~p~~~m~~~W~f~~~~--~gT~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lk~~aE~~~ 146 (146)
T cd08860 81 VET--GPFAYMNIRWEYTEVP--EGTRMRWVQDFEMKPGAPVDDAAMTDRLNTNTRAQMARIKKKIEAAA 146 (146)
T ss_pred ecC--CCcceeeeeEEEEECC--CCEEEEEEEEEEECCCCccchHHHHHHHhcccHHHHHHHHHHhhhcC
Confidence 333 3577777777888874 3599999988876532 22335667788888999999999999743
No 18
>cd07824 SRPBCC_6 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=98.89 E-value=1.8e-07 Score=73.31 Aligned_cols=133 Identities=20% Similarity=0.222 Sum_probs=82.1
Q ss_pred EEEEcCChHHHHHHHhCCCC-CccccccceEEEEec--CCCCCCeEEEEEEecCCCc-ceeEEEEeeecCCCcEEEEEEE
Q 038201 55 VQTINAPLPAVWSVVRRFDN-PQAYKHFLKSCHVIN--GDGHVGTLREVHVISGLPA-ANSTERLEILDDEHHVLSFSVI 130 (201)
Q Consensus 55 ~~~I~ApadkVW~vv~dF~~-pk~~p~~V~s~e~~e--Gdg~vGsvR~vt~~~G~p~-~~v~ERL~~lDde~~~~sY~vv 130 (201)
+..|+||+++||+++.|+.+ |+|++ .++++++.+ ++.++|+.-++......+. ..+.-++... +..+.+.|..
T Consensus 6 ~~~i~ap~e~Vw~~~tD~~~~~~w~~-~v~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~v~~~-~p~~~~~~~~- 82 (146)
T cd07824 6 VWRIPAPPEAVWDVLVDAESWPDWWP-GVERVVELEPGDEAGIGARRRYTWRGLLPYRLRFELRVTRI-EPLSLLEVRA- 82 (146)
T ss_pred EEEecCCHHHHHHHHhChhhcchhhh-ceEEEEEccCCCCCCcceEEEEEEEecCCcEEEEEEEEEee-cCCcEEEEEE-
Confidence 57899999999999999999 88775 788888876 3336777655443322221 2344555554 4566888885
Q ss_pred ecccCCCCeeEEEEEEeecCCCceEEEEEEEeeCCCCCCHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Q 038201 131 GGDHRLNNYRSVTTLHASPCGTGTVVVESYVCDVPPGNTREETCTFVDTIVRCNLQS-LAQISENMA 196 (201)
Q Consensus 131 eg~~~~~~Y~ati~v~p~~~~~~T~v~Ws~~~d~p~g~~~e~~~~~v~~i~~~~L~~-La~~~e~~~ 196 (201)
+|+. . ...+.++.|.+ ++|.|.++..++.+.-. -..+..++..+++..+.. |...+++|+
T Consensus 83 ~g~~--~-~~~~~~~~~~~--~gt~vt~~~~~~~~~~~-~~~l~~l~~~l~~~~~~~~~~~~~~~L~ 143 (146)
T cd07824 83 SGDL--E-GVGRWTLAPDG--SGTVVRYDWEVRTTKPW-MNLLAPLARPVFRWNHRRVMRAGEKGLA 143 (146)
T ss_pred EEee--e-EEEEEEEEEcC--CCEEEEEEEEEEcCHHH-HHhhhHhhhhHHHHhHHHHHHhHHHHHH
Confidence 5542 2 36778888853 57999998888863210 112233444444444444 344444443
No 19
>PF03364 Polyketide_cyc: Polyketide cyclase / dehydrase and lipid transport; InterPro: IPR005031 Members of this family of enzymes from Streptomyces spp. are involved in polyketide (linear poly-beta-ketones) synthesis.; PDB: 1T17_A 3GGN_B 2KCZ_A 2D4R_B 2REZ_A 2RES_A 3TVQ_A 2RER_A 2KF2_A 3TL1_A ....
Probab=98.86 E-value=6.4e-08 Score=73.56 Aligned_cols=125 Identities=25% Similarity=0.335 Sum_probs=76.9
Q ss_pred EcCChHHHHHHHhCCCC-CccccccceEEEEecCCCCCCeEEEEEEecCCCcceeEEEEeeecCCCcEEEEEEEecccCC
Q 038201 58 INAPLPAVWSVVRRFDN-PQAYKHFLKSCHVINGDGHVGTLREVHVISGLPAANSTERLEILDDEHHVLSFSVIGGDHRL 136 (201)
Q Consensus 58 I~ApadkVW~vv~dF~~-pk~~p~~V~s~e~~eGdg~vGsvR~vt~~~G~p~~~v~ERL~~lDde~~~~sY~vveg~~~~ 136 (201)
|+||+++||+++.|+.+ |+++ |.++++++++.++. +..-.+.+..++.......+..... ... +.+..++|+ +
T Consensus 1 V~ap~~~V~~~i~D~e~~~~~~-p~~~~v~vl~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~g~--~ 74 (130)
T PF03364_consen 1 VNAPPEEVWSVITDYENYPRFF-PPVKEVRVLERDGD-GMRARWEVKFGGIKRSWTSRVTEDP-PER-IRFEQISGP--F 74 (130)
T ss_dssp ESS-HHHHHHHHTTGGGHHHHC-TTEEEEEEEEEECC-EEEEEEEECTTTTCEEEEEEEEEEC-TTT-EEEESSETT--E
T ss_pred CCCCHHHHHHHHHHHHHHHHhC-CCCceEEEEEeCCC-eEEEEEEEecCCEEEEEEEEEEEEE-eee-eeeeecCCC--c
Confidence 78999999999999999 8877 57788888866542 3222444443322234455555433 333 888888774 6
Q ss_pred CCeeEEEEEEeecC---CCceEEEEEEEeeCCCCCCHHHHHHHHHHHHHHHHHHH
Q 038201 137 NNYRSVTTLHASPC---GTGTVVVESYVCDVPPGNTREETCTFVDTIVRCNLQSL 188 (201)
Q Consensus 137 ~~Y~ati~v~p~~~---~~~T~v~Ws~~~d~p~g~~~e~~~~~v~~i~~~~L~~L 188 (201)
+.+...=++.|.++ +..|.+.-.+.++++.......+..+++...+..|++|
T Consensus 75 ~~~~g~W~~~~~~~~~~g~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (130)
T PF03364_consen 75 KSFEGSWRFEPLGGNEGGTRTRVTYDYEVDPPGPLPGFLARQFFRRDLRQMLEAF 129 (130)
T ss_dssp EEEEEEEEEEEETTECCEEEEEEEEEEEEETSSSSHHHHHHHHHHHHHHHHHHHH
T ss_pred hhcEEEEEEEECCCCcCCCEEEEEEEEEEecCcHhHHHHHHHHHHHHHHHHHHhh
Confidence 89999999999863 22344444555554444444444444454444444443
No 20
>cd05018 CoxG Carbon monoxide dehydrogenase subunit G (CoxG). CoxG has been shown, in Oligotropha carboxidovorans, to anchor the carbon monoxide (CO) dehydrogenase to the cytoplasmic membrane. The gene encoding CoxG is part of the Cox cluster (coxBCMSLDEFGHIK) located on a low-copy-number, circular, megaplasmid pHCG3. This cluster includes genes encoding subunits of CO dehydrogenase and several accessory components involved in the utilization of CO. This family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=98.78 E-value=3.9e-07 Score=69.60 Aligned_cols=131 Identities=17% Similarity=0.141 Sum_probs=78.9
Q ss_pred EEEEEEcCChHHHHHHHhCCCC-CccccccceEEEEecCCCCCCeEEEEEEecCCCcc--eeEEEEeeecCCCcEEEEEE
Q 038201 53 YAVQTINAPLPAVWSVVRRFDN-PQAYKHFLKSCHVINGDGHVGTLREVHVISGLPAA--NSTERLEILDDEHHVLSFSV 129 (201)
Q Consensus 53 ~v~~~I~ApadkVW~vv~dF~~-pk~~p~~V~s~e~~eGdg~vGsvR~vt~~~G~p~~--~v~ERL~~lDde~~~~sY~v 129 (201)
..+..|++|+++||+++.|+.+ ++|+| .+.+++..+++ .... .+++..|.-.. ..+-++..+|+. +.+.+..
T Consensus 4 ~~~~~i~a~~e~v~~~l~D~~~~~~w~p-~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 78 (144)
T cd05018 4 SGEFRIPAPPEEVWAALNDPEVLARCIP-GCESLEKIGPN-EYEA--TVKLKVGPVKGTFKGKVELSDLDPP-ESYTITG 78 (144)
T ss_pred eeEEEecCCHHHHHHHhcCHHHHHhhcc-chhhccccCCC-eEEE--EEEEEEccEEEEEEEEEEEEecCCC-cEEEEEE
Confidence 3568899999999999999999 88775 56677765432 1111 12222121001 224455555543 5677776
Q ss_pred Eeccc-CCCCeeEEEEEEeecCCCceEEEEEEEeeCCCCCC----HHHHHHHHHHHHHHHHHHHHHH
Q 038201 130 IGGDH-RLNNYRSVTTLHASPCGTGTVVVESYVCDVPPGNT----REETCTFVDTIVRCNLQSLAQI 191 (201)
Q Consensus 130 veg~~-~~~~Y~ati~v~p~~~~~~T~v~Ws~~~d~p~g~~----~e~~~~~v~~i~~~~L~~La~~ 191 (201)
.+.+. ....+..+.++.|. +++|.+.|+..+++. +.. ......++..++...++.|++.
T Consensus 79 ~~~~~~~~~~~~~~~~l~~~--~~gT~v~~~~~~~~~-g~l~~l~~~~~~~~~~~~~~~~~~~l~~~ 142 (144)
T cd05018 79 EGKGGAGFVKGTARVTLEPD--GGGTRLTYTADAQVG-GKLAQLGSRLIDGAARKLINQFFENLASK 142 (144)
T ss_pred EEcCCCceEEEEEEEEEEec--CCcEEEEEEEEEEEc-cChhhhCHHHHHHHHHHHHHHHHHHHHHh
Confidence 65332 35688899999986 467999999999853 432 2223333333444444445443
No 21
>cd07820 SRPBCC_3 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=98.70 E-value=2.1e-06 Score=66.44 Aligned_cols=108 Identities=18% Similarity=0.196 Sum_probs=78.8
Q ss_pred EEEEEEcCChHHHHHHHhCCCC-CccccccceEEEEecC-CC--CCCeEEEEEEecCC-CcceeEEEEeeecCCCcEEEE
Q 038201 53 YAVQTINAPLPAVWSVVRRFDN-PQAYKHFLKSCHVING-DG--HVGTLREVHVISGL-PAANSTERLEILDDEHHVLSF 127 (201)
Q Consensus 53 ~v~~~I~ApadkVW~vv~dF~~-pk~~p~~V~s~e~~eG-dg--~vGsvR~vt~~~G~-p~~~v~ERL~~lDde~~~~sY 127 (201)
..++.|+||+++||+.+.|+.+ +++.| .+.++++.+. +| .+|+.-.+.+..++ +. ..+-+++.++ .++.+++
T Consensus 2 ~~s~~I~ap~e~V~~~~~d~~~~~~~~p-~~~~v~~~~~~~~~~~~G~~~~~~~~~~~~~~-~w~~~it~~~-p~~~f~~ 78 (137)
T cd07820 2 ERSTVIPAPIEEVFDFHSRPDNLERLTP-PWLEFAVLGRTPGLIYGGARVTYRLRHFGIPQ-RWTTEITEVE-PPRRFVD 78 (137)
T ss_pred eEEEEcCCCHHHHHHHHcCcchHHhcCC-CCCCeEEEecCCCcccCCcEEEEEEEecCCce-EEEEEEEEEc-CCCeEEE
Confidence 3578899999999999999999 77665 4557777532 22 56787777776543 22 3455666665 4557999
Q ss_pred EEEecccCCCCeeEEEEEEeecCCCceEEEEEEEeeCCCC
Q 038201 128 SVIGGDHRLNNYRSVTTLHASPCGTGTVVVESYVCDVPPG 167 (201)
Q Consensus 128 ~vveg~~~~~~Y~ati~v~p~~~~~~T~v~Ws~~~d~p~g 167 (201)
..+.|+ +..+..+..+.|.+ ++|.+.+...|++|-+
T Consensus 79 ~~~~G~--~~~w~h~~~f~~~~--~gT~vt~~v~~~~p~g 114 (137)
T cd07820 79 EQVSGP--FRSWRHTHRFEAIG--GGTLMTDRVEYRLPLG 114 (137)
T ss_pred EeccCC--chhCEEEEEEEECC--CceEEEEEEEEeCCch
Confidence 888774 56778888888864 3799999999998643
No 22
>PRK10724 hypothetical protein; Provisional
Probab=98.49 E-value=1.3e-05 Score=64.82 Aligned_cols=137 Identities=9% Similarity=0.014 Sum_probs=93.3
Q ss_pred eEEEEEEEcCChHHHHHHHhCCCC-CccccccceEEEEecCCCCCCeEEEEEEecCCCcceeEEEEeeecCCCcEEEEEE
Q 038201 51 CSYAVQTINAPLPAVWSVVRRFDN-PQAYKHFLKSCHVINGDGHVGTLREVHVISGLPAANSTERLEILDDEHHVLSFSV 129 (201)
Q Consensus 51 ~s~v~~~I~ApadkVW~vv~dF~~-pk~~p~~V~s~e~~eGdg~vGsvR~vt~~~G~p~~~v~ERL~~lDde~~~~sY~v 129 (201)
....++.|++|++++|+++.|.++ |++.| .++++++.+-++. +.+..++++-++-......|.. +++. +.+.+..
T Consensus 16 ~i~~~~~v~~s~~~v~~lv~Dve~yp~flp-~~~~s~vl~~~~~-~~~a~l~v~~~g~~~~f~srv~-~~~~-~~I~~~~ 91 (158)
T PRK10724 16 QISRTALVPYSAEQMYQLVNDVQSYPQFLP-GCTGSRVLESTPG-QMTAAVDVSKAGISKTFTTRNQ-LTSN-QSILMQL 91 (158)
T ss_pred eEEEEEEecCCHHHHHHHHHHHHHHHHhCc-ccCeEEEEEecCC-EEEEEEEEeeCCccEEEEEEEE-ecCC-CEEEEEe
Confidence 445579999999999999999999 98775 5666666543221 3344555543332334555544 4444 4899999
Q ss_pred EecccCCCCeeEEEEEEeecCCCceEEEEEEEeeCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 038201 130 IGGDHRLNNYRSVTTLHASPCGTGTVVVESYVCDVPPGNTREETCTFVDTIVRCNLQSLAQISENMAAR 198 (201)
Q Consensus 130 veg~~~~~~Y~ati~v~p~~~~~~T~v~Ws~~~d~p~g~~~e~~~~~v~~i~~~~L~~La~~~e~~~~~ 198 (201)
++| +++.+.+.=++.|.+ +++|.|.....|+.+.- ....++..++......|-+.+++.|.+
T Consensus 92 ~~G--pF~~l~g~W~f~p~~-~~~t~V~~~l~fef~s~----l~~~~~~~~~~~~~~~mv~AF~~Ra~~ 153 (158)
T PRK10724 92 VDG--PFKKLIGGWKFTPLS-QEACRIEFHLDFEFTNK----LIELAFGRVFKELASNMVQAFTVRAKE 153 (158)
T ss_pred cCC--ChhhccceEEEEECC-CCCEEEEEEEEEEEchH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 998 478889999999986 45799999988886432 233445566666666777777776653
No 23
>cd08893 SRPBCC_CalC_Aha1-like_GntR-HTH Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins; some contain an N-terminal GntR family winged HTH DNA-binding domain. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. Some proteins in this subgroup contain an N-terminal winged helix-turn-helix DNA-binding domain found in the GntR family of proteins which include bacterial transcriptional regulators and their putative homologs from eukaryota and archaea.
Probab=98.38 E-value=2.2e-05 Score=59.48 Aligned_cols=128 Identities=16% Similarity=0.031 Sum_probs=75.9
Q ss_pred EEEEEEcCChHHHHHHHhCCCC-CccccccceEEEEecCCCCCCeEEEEEEecCCCcceeEEEEeeecCCCcEEEEEEEe
Q 038201 53 YAVQTINAPLPAVWSVVRRFDN-PQAYKHFLKSCHVINGDGHVGTLREVHVISGLPAANSTERLEILDDEHHVLSFSVIG 131 (201)
Q Consensus 53 ~v~~~I~ApadkVW~vv~dF~~-pk~~p~~V~s~e~~eGdg~vGsvR~vt~~~G~p~~~v~ERL~~lDde~~~~sY~vve 131 (201)
.+++.|+||+++||+++.++.. ++||.+.. + .++-.+|.--.+...+. ....+.=++.+++ .++.++|+...
T Consensus 3 ~~~~~i~ap~e~Vw~~~td~~~~~~W~~~~~--~---~~~~~~G~~~~~~~~~~-~~~~~~~~v~~~~-~~~~l~~~~~~ 75 (136)
T cd08893 3 VYVTYIRATPEKVWQALTDPEFTRQYWGGTT--V---ESDWKVGSAFEYRRGDD-GTVDVEGEVLESD-PPRRLVHTWRA 75 (136)
T ss_pred EEEEEecCCHHHHHHHHcCchhhhheecccc--c---ccCCcCCCeEEEEeCCC-cccccceEEEEec-CCCeEEEEEec
Confidence 5689999999999999999999 89887622 1 23334444333444331 1123344566675 55567777654
Q ss_pred ccc----CCCCeeEEEEEEeecCCCceEEEEEEEeeCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 038201 132 GDH----RLNNYRSVTTLHASPCGTGTVVVESYVCDVPPGNTREETCTFVDTIVRCNLQSLAQISE 193 (201)
Q Consensus 132 g~~----~~~~Y~ati~v~p~~~~~~T~v~Ws~~~d~p~g~~~e~~~~~v~~i~~~~L~~La~~~e 193 (201)
+.. .......++.+.|.+ ++|.+......- +++. +. ...+..-+...|+.|++.+|
T Consensus 76 ~~~~~~~~~~~~~v~~~l~~~~--~~t~l~~~~~~~-~~~~--~~-~~~~~~gw~~~l~~Lk~~~e 135 (136)
T cd08893 76 VWDPEMAAEPPSRVTFEIEPVG--DVVKLTVTHDGF-PPGS--PT-LEGVSGGWPAILSSLKTLLE 135 (136)
T ss_pred CCCcccCCCCCEEEEEEEEecC--CcEEEEEEecCC-CCch--hH-HHhhhcCHHHHHHHHHHHhc
Confidence 332 133566677888764 468777665432 2221 12 22233345556788888776
No 24
>cd08899 SRPBCC_CalC_Aha1-like_6 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=98.36 E-value=1.4e-05 Score=63.59 Aligned_cols=126 Identities=17% Similarity=0.089 Sum_probs=81.2
Q ss_pred eEEEEEEEcCChHHHHHHHhCCCC-CccccccceEEEEecCCCCCCeEEEEEEecCCCcceeEEEEeeecCCCcEEEEEE
Q 038201 51 CSYAVQTINAPLPAVWSVVRRFDN-PQAYKHFLKSCHVINGDGHVGTLREVHVISGLPAANSTERLEILDDEHHVLSFSV 129 (201)
Q Consensus 51 ~s~v~~~I~ApadkVW~vv~dF~~-pk~~p~~V~s~e~~eGdg~vGsvR~vt~~~G~p~~~v~ERL~~lDde~~~~sY~v 129 (201)
...+++.|+||+++||+++.|+.. ++|+++. .++-.+|...++.+..... .....++.++|+. +.+.|+.
T Consensus 12 ~i~~~~~i~Ap~e~Vw~altdp~~~~~W~~~~-------~~~~~~G~~~~~~~~~~~~-~~~~~~v~e~~p~-~~l~~~~ 82 (157)
T cd08899 12 TLRFERLLPAPIEDVWAALTDPERLARWFAPG-------TGDLRVGGRVEFVMDDEEG-PNATGTILACEPP-RLLAFTW 82 (157)
T ss_pred EEEEEEecCCCHHHHHHHHcCHHHHHhhcCCC-------CCCcccCceEEEEecCCCC-CccceEEEEEcCC-cEEEEEe
Confidence 567889999999999999999998 8888632 1233456655666543211 2456677777654 5888887
Q ss_pred EecccCCCCeeEEEEEEeecCCCceEEEEEEEeeCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038201 130 IGGDHRLNNYRSVTTLHASPCGTGTVVVESYVCDVPPGNTREETCTFVDTIVRCNLQSLAQISENM 195 (201)
Q Consensus 130 veg~~~~~~Y~ati~v~p~~~~~~T~v~Ws~~~d~p~g~~~e~~~~~v~~i~~~~L~~La~~~e~~ 195 (201)
..++ .....++++.+.+ ++|.+.....+-+ +. +. ...+..-....|+.|++.+|+.
T Consensus 83 ~~~~---~~~~~~~~l~~~~--~gT~v~~~~~~~~--~~--~~-~~~~~~GW~~~L~~Lk~~~e~~ 138 (157)
T cd08899 83 GEGG---GESEVRFELAPEG--DGTRLTLTHRLLD--ER--FG-AGAVGAGWHLCLDVLEAALEGG 138 (157)
T ss_pred cCCC---CCceEEEEEEEcC--CCEEEEEEEeccC--ch--hh-hhhhcccHHHHHHHHHHHHcCC
Confidence 7654 3345567787753 5688776655432 21 12 2223333456688888888764
No 25
>cd08898 SRPBCC_CalC_Aha1-like_5 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=98.36 E-value=1.9e-05 Score=60.57 Aligned_cols=132 Identities=19% Similarity=0.162 Sum_probs=73.0
Q ss_pred EEEEEEcCChHHHHHHHhCCCC-CccccccceEEEEecCCCCCCeEEEEEEecCCCcceeEEEEeeecCCCcEEEEEEEe
Q 038201 53 YAVQTINAPLPAVWSVVRRFDN-PQAYKHFLKSCHVINGDGHVGTLREVHVISGLPAANSTERLEILDDEHHVLSFSVIG 131 (201)
Q Consensus 53 ~v~~~I~ApadkVW~vv~dF~~-pk~~p~~V~s~e~~eGdg~vGsvR~vt~~~G~p~~~v~ERL~~lDde~~~~sY~vve 131 (201)
..++.|+||+++||+++.++.. ++|+++.. .....|.+..| .+++.++ ......=++..++ .++.+.|+...
T Consensus 4 ~~~i~i~a~~e~Vw~~~td~~~~~~W~~~~~--~~~~~~~~~~g---~~~~~~~-~~~~~~~~i~~~~-p~~~l~~~~~~ 76 (145)
T cd08898 4 ERTILIDAPRERVWRALTDPEHFGQWFGVKL--GPFVVGEGATG---EITYPGY-EHGVFPVTVVEVD-PPRRFSFRWHP 76 (145)
T ss_pred EEEEEecCCHHHHHHHhcChhhhhhcccccC--CCcccCCccee---EEecCCC-CccceEEEEEEeC-CCcEEEEEecC
Confidence 4578999999999999999998 88887543 12211222223 3344332 1123344666665 45578888654
Q ss_pred cc----c---CCCCeeEEEEEEeecCCCceEEEEEEE-eeCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 038201 132 GD----H---RLNNYRSVTTLHASPCGTGTVVVESYV-CDVPPGNTREETCTFVDTIVRCNLQSLAQISE 193 (201)
Q Consensus 132 g~----~---~~~~Y~ati~v~p~~~~~~T~v~Ws~~-~d~p~g~~~e~~~~~v~~i~~~~L~~La~~~e 193 (201)
.. . .......++++.+.+ ++|.+.++-. ++..+....+........-....|..|++.+|
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~--~gT~vt~~~~~~~~~~~~~~~~~~~~~~~gw~~~l~~L~~~le 144 (145)
T cd08898 77 PAIDPGEDYSAEPSTLVEFTLEPIA--GGTLLTVTESGFDALPAERRAEAYRMNEGGWDEQLENLVAYVE 144 (145)
T ss_pred CCcccccccCCCCceEEEEEEEecC--CcEEEEEEEcCCCCCChHHHHHHHHhhhhhHHHHHHHHHHHhc
Confidence 33 1 123445677888863 5799988744 33211111111222233334555666666654
No 26
>cd07823 SRPBCC_5 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=98.35 E-value=3.1e-05 Score=60.48 Aligned_cols=104 Identities=23% Similarity=0.210 Sum_probs=64.8
Q ss_pred EEEEcCChHHHHHHHhCCCC-CccccccceEEEEecCCCCCCeEEEEEEecCCCccee--EEEEeeecCCCcEEEEEEEe
Q 038201 55 VQTINAPLPAVWSVVRRFDN-PQAYKHFLKSCHVINGDGHVGTLREVHVISGLPAANS--TERLEILDDEHHVLSFSVIG 131 (201)
Q Consensus 55 ~~~I~ApadkVW~vv~dF~~-pk~~p~~V~s~e~~eGdg~vGsvR~vt~~~G~p~~~v--~ERL~~lDde~~~~sY~vve 131 (201)
+.+|+||+++||+++.|+.+ +.++| .+++.+.. |++ ...-.+++.-|.-...+ +=++..++.+.+.+.+..-+
T Consensus 4 ~~~v~a~pe~vw~~l~D~~~~~~~~p-g~~~~~~~-~~~--~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g 79 (146)
T cd07823 4 EFTVPAPPDRVWALLLDIERVAPCLP-GASLTEVE-GDD--EYKGTVKVKLGPISASFKGTARLLEDDEAARRAVLEATG 79 (146)
T ss_pred eEEecCCHHHHHHHhcCHHHHHhcCC-Cceecccc-CCC--eEEEEEEEEEccEEEEEEEEEEEEeccCCCcEEEEEEEE
Confidence 57899999999999999999 77554 67777654 322 12223343322111112 12455565578888887665
Q ss_pred cccC-CC--CeeEEEEEEeecCCCceEEEEEEEeeC
Q 038201 132 GDHR-LN--NYRSVTTLHASPCGTGTVVVESYVCDV 164 (201)
Q Consensus 132 g~~~-~~--~Y~ati~v~p~~~~~~T~v~Ws~~~d~ 164 (201)
.+.. .. ....++++.|. +++|.+.|+..++.
T Consensus 80 ~~~~~~g~~~~~~~~~l~~~--~~gT~v~~~~~~~~ 113 (146)
T cd07823 80 KDARGQGTAEATVTLRLSPA--GGGTRVTVDTDLAL 113 (146)
T ss_pred ecCCCcceEEEEEEEEEEec--CCcEEEEEEEEEEE
Confidence 3221 11 34556777773 46899999988774
No 27
>cd08894 SRPBCC_CalC_Aha1-like_1 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=98.18 E-value=7.6e-05 Score=57.90 Aligned_cols=133 Identities=14% Similarity=0.036 Sum_probs=71.9
Q ss_pred EEEEEEEcCChHHHHHHHhCCCC-Ccccccc-ceEEEEecCCCCCCeEEEEEEe--cCCCcceeEEEEeeecCCCcEEEE
Q 038201 52 SYAVQTINAPLPAVWSVVRRFDN-PQAYKHF-LKSCHVINGDGHVGTLREVHVI--SGLPAANSTERLEILDDEHHVLSF 127 (201)
Q Consensus 52 s~v~~~I~ApadkVW~vv~dF~~-pk~~p~~-V~s~e~~eGdg~vGsvR~vt~~--~G~p~~~v~ERL~~lDde~~~~sY 127 (201)
..++..|+||+++||.++.+.+. .+||.|. .. +...+.|..+|..-.+.+. +|. .....=+++++++ ++.|.|
T Consensus 2 l~~~r~i~ap~e~Vw~a~t~p~~l~~W~~p~~~~-~~~~~~d~~~GG~~~~~~~~~~g~-~~~~~g~v~e~~p-~~~l~~ 78 (139)
T cd08894 2 IVTTRVIDAPRDLVFAAWTDPEHLAQWWGPEGFT-NTTHEFDLRPGGRWRFVMHGPDGT-DYPNRIVFLEIEP-PERIVY 78 (139)
T ss_pred EEEEEEeCCCHHHHHHHhCCHHHHhhccCcCCCc-ceEEEEEecCCCEEEEEEECCCCC-EecceEEEEEEcC-CCEEEE
Confidence 35789999999999999999887 7777432 21 1111223234443333332 232 1122346777764 557777
Q ss_pred EEEecccCCCCeeEEEEEEeecCCCceEEEEEEEeeCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 038201 128 SVIGGDHRLNNYRSVTTLHASPCGTGTVVVESYVCDVPPGNTREETCTFVDTIVRCNLQSLAQISE 193 (201)
Q Consensus 128 ~vveg~~~~~~Y~ati~v~p~~~~~~T~v~Ws~~~d~p~g~~~e~~~~~v~~i~~~~L~~La~~~e 193 (201)
+...++ .....++++.|. +++|.+.-+..+..++. -.+.+...+..-....|+.|++.++
T Consensus 79 t~~~~~---~~~~v~~~~~~~--~~gT~ltl~~~~~~~~~-~~~~~~~~~~~Gw~~~l~~L~~~l~ 138 (139)
T cd08894 79 DHGSGP---PRFRLTVTFEEQ--GGKTRLTWRQVFPTAAE-RCEKIKFGAVEGNEQTLDRLAAYLA 138 (139)
T ss_pred EeccCC---CcEEEEEEEEEC--CCCEEEEEEEEcCCHHH-HHHHHHhCHHHHHHHHHHHHHHHHh
Confidence 765442 234566788775 36788877765432110 0111112223334455666666554
No 28
>COG3427 Carbon monoxide dehydrogenase subunit G, CoxG [Energy production and conversion]
Probab=98.14 E-value=6.9e-05 Score=60.16 Aligned_cols=104 Identities=21% Similarity=0.223 Sum_probs=72.4
Q ss_pred EEEEcCChHHHHHHHhCCCCCccccccceEEEEecCCCCCCeEEEEEEecCC-Ccc-eeEEEEeeecCCCcEEEEEEEec
Q 038201 55 VQTINAPLPAVWSVVRRFDNPQAYKHFLKSCHVINGDGHVGTLREVHVISGL-PAA-NSTERLEILDDEHHVLSFSVIGG 132 (201)
Q Consensus 55 ~~~I~ApadkVW~vv~dF~~pk~~p~~V~s~e~~eGdg~vGsvR~vt~~~G~-p~~-~v~ERL~~lDde~~~~sY~vveg 132 (201)
+..|++|+++||+.+.|+.......|.++|++. +||. -.-.+.+.-|. +.. .-+=++..+|+..++++...-+|
T Consensus 6 ~f~V~~p~e~Vw~~L~dpe~~a~ciPG~qs~e~-~g~e---~~~~v~l~ig~l~~~~~g~~~~~~v~~~~~~~~i~g~G~ 81 (146)
T COG3427 6 TFRVAAPPEAVWEFLNDPEQVAACIPGVQSVET-NGDE---YTAKVKLKIGPLKGTFSGRVRFVNVDEPPRSITINGSGG 81 (146)
T ss_pred eEEecCCHHHHHHHhcCHHHHHhhcCCcceeee-cCCe---EEEEEEEeecceeEEEEEEEEEccccCCCcEEEEEeecc
Confidence 468999999999999999996556678999986 4652 22222332221 111 23456777788999999888884
Q ss_pred cc-CCCCeeEEEEEEeecCCCceEEEEEEEeeC
Q 038201 133 DH-RLNNYRSVTTLHASPCGTGTVVVESYVCDV 164 (201)
Q Consensus 133 ~~-~~~~Y~ati~v~p~~~~~~T~v~Ws~~~d~ 164 (201)
.. ...+...-++++|.+ ++|++.|.+..++
T Consensus 82 ~~~g~~~~~~~v~l~~~g--~gt~v~w~~~~~~ 112 (146)
T COG3427 82 GAAGFADGTVDVQLEPSG--EGTRVNWFADANV 112 (146)
T ss_pred cccceeeeeeEEEEEEcC--CCcEEEEEEEccc
Confidence 43 356667777888874 4599999988765
No 29
>cd07826 SRPBCC_CalC_Aha1-like_9 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=98.09 E-value=0.00024 Score=55.54 Aligned_cols=138 Identities=8% Similarity=-0.089 Sum_probs=73.2
Q ss_pred EEEEEEEcCChHHHHHHHhCCCC-CccccccceEEEEecCCCCCCeEEEEEEe-cCCCcceeEEEEeeecCCCcEEEEEE
Q 038201 52 SYAVQTINAPLPAVWSVVRRFDN-PQAYKHFLKSCHVINGDGHVGTLREVHVI-SGLPAANSTERLEILDDEHHVLSFSV 129 (201)
Q Consensus 52 s~v~~~I~ApadkVW~vv~dF~~-pk~~p~~V~s~e~~eGdg~vGsvR~vt~~-~G~p~~~v~ERL~~lDde~~~~sY~v 129 (201)
..++..++||+++||.++.+-.. .+||.+.--.+...+.|-.+|..-.+.+. .++....+.=++.++|+. +.+.|+-
T Consensus 2 l~i~r~~~ap~e~Vw~a~Tdpe~l~~W~~p~~~~~~~~~~d~r~GG~~~~~~~~~~g~~~~~~g~~~ei~p~-~~l~~t~ 80 (142)
T cd07826 2 IVITREFDAPRELVFRAHTDPELVKRWWGPRGLTMTVCECDIRVGGSYRYVHRAPDGEEMGFHGVYHEVTPP-ERIVQTE 80 (142)
T ss_pred EEEEEEECCCHHHHHHHhCCHHHHhhccCCCCCcceEEEEeccCCCEEEEEEECCCCCEecceEEEEEEcCC-CEEEEEe
Confidence 35789999999999999999888 67776542222222334344544444443 222222344466667654 3555543
Q ss_pred EecccCCCCeeEEEEEEeecCCCceEEEEEEEeeCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 038201 130 IGGDHRLNNYRSVTTLHASPCGTGTVVVESYVCDVPPGNTREETCTFVDTIVRCNLQSLAQISE 193 (201)
Q Consensus 130 veg~~~~~~Y~ati~v~p~~~~~~T~v~Ws~~~d~p~g~~~e~~~~~v~~i~~~~L~~La~~~e 193 (201)
--.+.+......++++.+. +++|.+.-...|..+ +..++....-+..=....|+.|++.++
T Consensus 81 ~~~~~~~~~s~v~~~l~~~--~~gT~l~l~~~~~~~-~~~~~~~~~~~~~Gw~~~l~~L~~~l~ 141 (142)
T cd07826 81 EFEGLPDGVALETVTFTEL--GGRTRLTATSRYPSK-EARDGVLASGMEEGMEESYDRLDELLA 141 (142)
T ss_pred EecCCCCCceEEEEEEEEC--CCCEEEEEEEEeCCH-HHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 3222222334556778775 367887766444321 111111121222334556666666554
No 30
>cd08900 SRPBCC_CalC_Aha1-like_7 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=98.08 E-value=0.00034 Score=54.43 Aligned_cols=135 Identities=15% Similarity=0.055 Sum_probs=71.8
Q ss_pred EEEEEEcCChHHHHHHHhCCCC-Ccccccc-ceEEEEecCCCCCCeEEEEEEe-cCCCcceeEEEEeeecCCCcEEEEEE
Q 038201 53 YAVQTINAPLPAVWSVVRRFDN-PQAYKHF-LKSCHVINGDGHVGTLREVHVI-SGLPAANSTERLEILDDEHHVLSFSV 129 (201)
Q Consensus 53 ~v~~~I~ApadkVW~vv~dF~~-pk~~p~~-V~s~e~~eGdg~vGsvR~vt~~-~G~p~~~v~ERL~~lDde~~~~sY~v 129 (201)
.++..++||+++||+++.+-.. .+||.+. --.+...+.|-.+|..-.+.+. .++......=++.++|+. +.+.|+.
T Consensus 3 ~i~r~~~ap~e~Vw~a~tdp~~l~~W~~~~~~~~~~~~~~d~~~Gg~~~~~~~~~~g~~~~~~g~~~~~~p~-~~l~~t~ 81 (143)
T cd08900 3 TLERTYPAPPERVFAAWSDPAARARWFVPSPDWTVLEDEFDFRVGGREVSRGGPKGGPEITVEARYHDIVPD-ERIVYTY 81 (143)
T ss_pred EEEEEeCCCHHHHHHHhcCHHHHHhcCCCCCCCceeeeEEecCCCCEEEEEEECCCCCEEeeeEEEEEecCC-ceEEEEE
Confidence 5778999999999999999988 6777541 1111112223233443333332 232222344466777654 4666654
Q ss_pred E--ecccCCCCeeEEEEEEeecCCCceEEEEEEEeeCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 038201 130 I--GGDHRLNNYRSVTTLHASPCGTGTVVVESYVCDVPPGNTREETCTFVDTIVRCNLQSLAQISE 193 (201)
Q Consensus 130 v--eg~~~~~~Y~ati~v~p~~~~~~T~v~Ws~~~d~p~g~~~e~~~~~v~~i~~~~L~~La~~~e 193 (201)
. .++.+......++.+.|. +++|.++-....-..++. +....+..+ ....|+.|++.++
T Consensus 82 ~~~~~~~~~~~s~v~~~l~~~--~~gT~l~~~~~~~~~~~~--~~~~~~~~G-W~~~l~~L~~~l~ 142 (143)
T cd08900 82 TMHIGGTLLSASLATVEFAPE--GGGTRLTLTEQGAFLDGD--DDPAGREQG-TAALLDNLAAELE 142 (143)
T ss_pred eeccCCccccceEEEEEEEEC--CCCEEEEEEEEEeccccc--chhhhHHHH-HHHHHHHHHHHHh
Confidence 3 222222234467788775 356877665442111111 122233333 3445777777765
No 31
>PF06240 COXG: Carbon monoxide dehydrogenase subunit G (CoxG); InterPro: IPR010419 The CO dehydrogenase structural genes coxMSL are flanked by nine accessory genes arranged as the cox gene cluster. The cox genes are specifically and coordinately transcribed under chemolithoautotrophic conditions in the presence of CO as carbon and energy source [].; PDB: 2NS9_A 2PCS_A.
Probab=97.99 E-value=7.8e-05 Score=58.45 Aligned_cols=104 Identities=20% Similarity=0.183 Sum_probs=61.4
Q ss_pred EEEEcCChHHHHHHHhCCCCCccccccceEEEEecCCCCCCeEEEEEEecCC-Ccc-eeEEEEeeecCCCcEEEEEEEec
Q 038201 55 VQTINAPLPAVWSVVRRFDNPQAYKHFLKSCHVINGDGHVGTLREVHVISGL-PAA-NSTERLEILDDEHHVLSFSVIGG 132 (201)
Q Consensus 55 ~~~I~ApadkVW~vv~dF~~pk~~p~~V~s~e~~eGdg~vGsvR~vt~~~G~-p~~-~v~ERL~~lDde~~~~sY~vveg 132 (201)
+.+|++|+++||+++.|.......-|.+++.+..+ +.--+ .+++.-|. +.. ..+=++..+|+.++.. ..+-+.
T Consensus 2 s~~v~a~~~~vw~~l~D~~~l~~ciPG~~~~e~~~-~~~~~---~~~v~vG~i~~~~~g~~~~~~~~~~~~~~-~~~~g~ 76 (140)
T PF06240_consen 2 SFEVPAPPEKVWAFLSDPENLARCIPGVESIEKVG-DEYKG---KVKVKVGPIKGTFDGEVRITEIDPPESYT-LEFEGR 76 (140)
T ss_dssp EEEECS-HHHHHHHHT-HHHHHHHSTTEEEEEEEC-TEEEE---EEEEESCCCEEEEEEEEEEEEEETTTEEE-EEEEEE
T ss_pred cEEecCCHHHHHHHhcCHHHHHhhCCCcEEeeecC-cEEEE---EEEEEeccEEEEEEEEEEEEEcCCCcceE-eeeecc
Confidence 46899999999999999988544557788888764 31111 12222221 111 3344667777777653 555544
Q ss_pred ccC-CCCeeEEEEEEeecCCCceEEEEEEEeeC
Q 038201 133 DHR-LNNYRSVTTLHASPCGTGTVVVESYVCDV 164 (201)
Q Consensus 133 ~~~-~~~Y~ati~v~p~~~~~~T~v~Ws~~~d~ 164 (201)
+.. -.+-...+++...++++ |.+.|+..++.
T Consensus 77 g~~~~~~~~~~~~~~~~~~~~-T~v~~~~~~~~ 108 (140)
T PF06240_consen 77 GRGGGSSASANITLSLEDDGG-TRVTWSADVEV 108 (140)
T ss_dssp ECTCCEEEEEEEEEEECCCTC-EEEEEEEEEEE
T ss_pred CCccceEEEEEEEEEcCCCCC-cEEEEEEEEEE
Confidence 432 22334455666554344 99999999885
No 32
>cd08896 SRPBCC_CalC_Aha1-like_3 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=97.99 E-value=0.00047 Score=53.86 Aligned_cols=130 Identities=15% Similarity=0.063 Sum_probs=69.7
Q ss_pred EEEEEEcCChHHHHHHHhCCCC-Ccccccc---ceEEEEecCCCCCCeEEEEEEe-cCCCcceeEEEEeeecCCCcEEEE
Q 038201 53 YAVQTINAPLPAVWSVVRRFDN-PQAYKHF---LKSCHVINGDGHVGTLREVHVI-SGLPAANSTERLEILDDEHHVLSF 127 (201)
Q Consensus 53 ~v~~~I~ApadkVW~vv~dF~~-pk~~p~~---V~s~e~~eGdg~vGsvR~vt~~-~G~p~~~v~ERL~~lDde~~~~sY 127 (201)
.++..|+||+++||.++.+-.. .+||.|. +..+++ |-.+|..-.+.+. .++..-...=++.++|+.+ .+.|
T Consensus 3 ~i~r~i~a~~e~Vw~a~t~pe~~~~W~~p~~~~~~~~~~---d~~~GG~~~~~~~~~~g~~~~~~g~v~~i~p~~-~l~~ 78 (146)
T cd08896 3 VLSRTIDAPRELVWRAWTEPELLKQWFCPKPWTTEVAEL---DLRPGGAFRTVMRGPDGEEFPNPGCFLEVVPGE-RLVF 78 (146)
T ss_pred EEEEEeCCCHHHHHHHcCCHHHHhccCCCCCccceEEEE---EeecCcEEEEEEECCCCCEecceEEEEEEeCCC-EEEE
Confidence 5789999999999999999887 6777642 222322 2223333333332 2222113345677787554 5555
Q ss_pred E--EEecccC-CCC-eeEEEEEEeecCCCceEEEEEEEeeCCCCCCHHHHHHHH----HHHHHHHHHHHHHHHH
Q 038201 128 S--VIGGDHR-LNN-YRSVTTLHASPCGTGTVVVESYVCDVPPGNTREETCTFV----DTIVRCNLQSLAQISE 193 (201)
Q Consensus 128 ~--vveg~~~-~~~-Y~ati~v~p~~~~~~T~v~Ws~~~d~p~g~~~e~~~~~v----~~i~~~~L~~La~~~e 193 (201)
+ +.++..+ -.. -..++++.|. +++|.+.-.-.+.. .+...... ..=....|+.|++.++
T Consensus 79 t~~~~~~~~~~~~~~~~v~~~~~~~--~~gT~Ltl~~~~~~-----~~~~~~~~~~~~~~GW~~~l~~L~~~l~ 145 (146)
T cd08896 79 TDALTPGWRPAEKPFMTAIITFEDE--GGGTRYTARARHWT-----EADRKQHEEMGFHDGWGTAADQLAALAE 145 (146)
T ss_pred EEeecCCcCCCCCCcEEEEEEEEec--CCcEEEEEEEEeCC-----HHHHHHHHHcCHHHHHHHHHHHHHHHHh
Confidence 5 3222111 122 3456778775 46788765533321 12211111 2234556777777665
No 33
>cd08895 SRPBCC_CalC_Aha1-like_2 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=97.98 E-value=0.0011 Score=51.80 Aligned_cols=107 Identities=15% Similarity=-0.007 Sum_probs=61.8
Q ss_pred EEEEEEEcCChHHHHHHHhCCCC-CccccccceEEEEecCCCCCCeEEEEEE--ec------CCCcceeEEEEeeecCCC
Q 038201 52 SYAVQTINAPLPAVWSVVRRFDN-PQAYKHFLKSCHVINGDGHVGTLREVHV--IS------GLPAANSTERLEILDDEH 122 (201)
Q Consensus 52 s~v~~~I~ApadkVW~vv~dF~~-pk~~p~~V~s~e~~eGdg~vGsvR~vt~--~~------G~p~~~v~ERL~~lDde~ 122 (201)
..++..|+||+++||+++.+... .+||.+-=-.+.....|-.+|..-.+.+ .+ .+......=+++++|+.+
T Consensus 2 ~~~~r~i~ap~e~Vw~a~td~~~~~~W~~p~~~~~~~~~~d~~~GG~~~~~~~~~~~~~g~~~g~~~~~~g~v~~v~p~~ 81 (146)
T cd08895 2 DRLHRVIAAPPERVYRAFLDPDALAKWLPPDGMTGTVHEFDAREGGGFRMSLTYFDPSVGKTTGNTDVFGGRFLELVPNE 81 (146)
T ss_pred EEEEEEECCCHHHHHHHHcCHHHHhhcCCCCCeEeEEEEEecccCCeEEEEEEcCCccccccCCcEeeeEEEEEEEcCCC
Confidence 35789999999999999999988 7877643112222223323343333333 22 011113334577776554
Q ss_pred cEEEEEEEeccc-CCCCeeEEEEEEeecCCCceEEEEEEE
Q 038201 123 HVLSFSVIGGDH-RLNNYRSVTTLHASPCGTGTVVVESYV 161 (201)
Q Consensus 123 ~~~sY~vveg~~-~~~~Y~ati~v~p~~~~~~T~v~Ws~~ 161 (201)
.|.|+..-.+. .-.....++.+.+. +++|.+.++..
T Consensus 82 -~i~~~~~~~~~~~~~~~~v~~~~~~~--~~~T~lt~~~~ 118 (146)
T cd08895 82 -RIVYTDVFDDPSLSGEMTMTWTLSPV--SGGTDVTIVQS 118 (146)
T ss_pred -EEEEEEEecCCCCCceEEEEEEEEec--CCCEEEEEEEe
Confidence 66666432221 11334567777775 46799998865
No 34
>cd08876 START_1 Uncharacterized subgroup of the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domain family. Functionally uncharacterized subgroup of the START domain family. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some mammalian members of the START family (STARDs), it is known which lipids bind in this pocket; these include cholesterol (STARD1, -3, -4, and -5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2, -7, and -10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). Mammalian STARDs participate in the control of various cellular processes, including lipid trafficking between intracellular compartments, lipid metabolism, and modulation of signaling events. Mutation or altered expression of STARDs is linked to diseases such as cancer, genetic disorders, a
Probab=97.91 E-value=0.0032 Score=51.34 Aligned_cols=140 Identities=13% Similarity=0.040 Sum_probs=80.4
Q ss_pred eeEEEEEEEcCChHHHHHHHhCCCC-CccccccceEEEEecCCCCCCeEEEEEEecCCCc---ceeEEEEeeecCCCcEE
Q 038201 50 CCSYAVQTINAPLPAVWSVVRRFDN-PQAYKHFLKSCHVINGDGHVGTLREVHVISGLPA---ANSTERLEILDDEHHVL 125 (201)
Q Consensus 50 ~~s~v~~~I~ApadkVW~vv~dF~~-pk~~p~~V~s~e~~eGdg~vGsvR~vt~~~G~p~---~~v~ERL~~lDde~~~~ 125 (201)
..--.+.+|++|+++||+++.|.+. |+|. +.+.++++++-.+.--.+-...+....|. ..+..+-...+.++..+
T Consensus 41 ~~~k~~~~i~~s~e~v~~vi~d~e~~~~w~-~~~~~~~vie~~~~~~~i~~~~~~~p~pvs~Rdfv~~~~~~~~~~~~~~ 119 (195)
T cd08876 41 KEFKAVAEVDASIEAFLALLRDTESYPQWM-PNCKESRVLKRTDDNERSVYTVIDLPWPVKDRDMVLRSTTEQDADDGSV 119 (195)
T ss_pred EEEEEEEEEeCCHHHHHHHHhhhHhHHHHH-hhcceEEEeecCCCCcEEEEEEEecccccCCceEEEEEEEEEcCCCCEE
Confidence 4455667899999999999999999 8765 57888888765432123333334333221 12222212223223444
Q ss_pred EEEEEeccc--C-------CCCeeEEEEEEeecCCCceEEEEEEEeeCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 038201 126 SFSVIGGDH--R-------LNNYRSVTTLHASPCGTGTVVVESYVCDVPPGNTREETCTFVDTIVRCNLQSLAQI 191 (201)
Q Consensus 126 sY~vveg~~--~-------~~~Y~ati~v~p~~~~~~T~v~Ws~~~d~p~g~~~e~~~~~v~~i~~~~L~~La~~ 191 (201)
...+...+. | ...+.+...+.|.+ +++|.+.....+|+.-....-.+..++.......|++|++.
T Consensus 120 ~i~~~s~~~~~P~~~~~vR~~~~~~~~~i~~~~-~~~t~vt~~~~~dp~g~iP~~lv~~~~~~~~~~~l~~l~~~ 193 (195)
T cd08876 120 TITLEAAPEALPEQKGYVRIKTVEGQWTFTPLG-NGKTRVTYQAYADPGGSIPGWLANAFAKDAPYNTLENLRKQ 193 (195)
T ss_pred EEEeecCCccCCCCCCeEEceeceeeEEEEECC-CCeEEEEEEEEeCCCCCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 444443322 2 45666667788875 56799999888886433334344444444444445555443
No 35
>cd08897 SRPBCC_CalC_Aha1-like_4 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=97.69 E-value=0.0019 Score=49.61 Aligned_cols=123 Identities=18% Similarity=0.209 Sum_probs=70.7
Q ss_pred EEEEEEcCChHHHHHHHhCCCC-Ccccccc----ceEEEEecCCCCCCeEEEEEEe--cCCCcceeEEEEeeecCCCcEE
Q 038201 53 YAVQTINAPLPAVWSVVRRFDN-PQAYKHF----LKSCHVINGDGHVGTLREVHVI--SGLPAANSTERLEILDDEHHVL 125 (201)
Q Consensus 53 ~v~~~I~ApadkVW~vv~dF~~-pk~~p~~----V~s~e~~eGdg~vGsvR~vt~~--~G~p~~~v~ERL~~lDde~~~~ 125 (201)
.+++.|+||+++||+++.+-.. .+|+.+. +..++ .|-.+|..-.+.+. +|.....+.=+..+++ .++.+
T Consensus 3 ~~~~~~~ap~e~Vw~a~td~e~~~~W~~~~~~~~~~~~~---~d~~~GG~~~~~~~~~~g~~~~~~~g~~~ei~-p~~~l 78 (133)
T cd08897 3 TVETTVDAPIEKVWEAWTTPEHITKWNFASDDWHCPSAE---NDLRVGGKFSYRMEAKDGSMGFDFEGTYTEVE-PHKLI 78 (133)
T ss_pred EEEEEeCCCHHHHHHHhCCHHHHhhCCCCCCCcccceee---ecCCcCCEEEEEEEcCCCCcccccceEEEEEC-CCCEE
Confidence 5679999999999999999888 6665431 12232 23344544444432 2321112344556665 45688
Q ss_pred EEEEEecccCCCCeeEEEEEEeecCCCceEEEEEEEeeCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 038201 126 SFSVIGGDHRLNNYRSVTTLHASPCGTGTVVVESYVCDVPPGNTREETCTFVDTIVRCNLQSLAQISE 193 (201)
Q Consensus 126 sY~vveg~~~~~~Y~ati~v~p~~~~~~T~v~Ws~~~d~p~g~~~e~~~~~v~~i~~~~L~~La~~~e 193 (201)
.|+..++ ...++++.|. +++|.+.=+ ++..+.. ....+..+ ....|..|++.+|
T Consensus 79 ~~~~~~~------~~v~~~l~~~--~~gT~l~l~--~~~~~~~---~~~~~~~G-W~~~l~~L~~~le 132 (133)
T cd08897 79 EYTMEDG------REVEVEFTEE--GDGTKVVET--FDAENEN---PVEMQRQG-WQAILDNFKKYVE 132 (133)
T ss_pred EEEcCCC------CEEEEEEEEC--CCCEEEEEE--ECCCCCC---cHHHHHHH-HHHHHHHHHHHhh
Confidence 8886432 3567888875 367877644 4332211 12223333 3667788887776
No 36
>COG5637 Predicted integral membrane protein [Function unknown]
Probab=97.68 E-value=0.0013 Score=54.72 Aligned_cols=139 Identities=17% Similarity=0.206 Sum_probs=91.9
Q ss_pred CCCceeEEEEEEEcCChHHHHHHHhCCCC-CccccccceEEEEecCCCCCCeEEEEEEec--CCCcceeEEEEeeecCCC
Q 038201 46 GPNQCCSYAVQTINAPLPAVWSVVRRFDN-PQAYKHFLKSCHVINGDGHVGTLREVHVIS--GLPAANSTERLEILDDEH 122 (201)
Q Consensus 46 ~~~~~~s~v~~~I~ApadkVW~vv~dF~~-pk~~p~~V~s~e~~eGdg~vGsvR~vt~~~--G~p~~~v~ERL~~lDde~ 122 (201)
-.+-....+.++|++|+|.||.+.+|+.+ |.|+ -.++|+++.+... -+|+.+. |+..+| .-+|+ -|..+
T Consensus 66 ~~~~i~v~~~V~I~kPae~vy~~W~dLe~lP~~M-khl~SVkVlddkr-----SrW~~~ap~g~~v~W-ea~it-~d~~~ 137 (217)
T COG5637 66 MAKPIEVEVQVTIDKPAEQVYAYWRDLENLPLWM-KHLDSVKVLDDKR-----SRWKANAPLGLEVEW-EAEIT-KDIPG 137 (217)
T ss_pred ccCceEEEEEEEeCChHHHHHHHHHhhhhhhHHH-HhhceeeccCCCc-----cceeEcCCCCceEEE-eehhh-ccCCC
Confidence 34455677889999999999999999999 8866 4789999864431 3555543 333322 33444 57889
Q ss_pred cEEEEEEEecccCCCCeeEEEEEEeecCCCceEEEEEEEeeCCCCCCHHHHHHHHH----HHHHHHHHHHHHHHHHH
Q 038201 123 HVLSFSVIGGDHRLNNYRSVTTLHASPCGTGTVVVESYVCDVPPGNTREETCTFVD----TIVRCNLQSLAQISENM 195 (201)
Q Consensus 123 ~~~sY~vveg~~~~~~Y~ati~v~p~~~~~~T~v~Ws~~~d~p~g~~~e~~~~~v~----~i~~~~L~~La~~~e~~ 195 (201)
..|.|.=++|.-. . -++.+++.+.. ++.|.|.=...|.+|-+........|+. .-++.-|+..+..+|..
T Consensus 138 e~I~W~Sl~Ga~v-~-NsG~VrF~~~p-g~~t~V~v~lsY~~Pgg~~~a~va~~fgeepeqqI~~DL~RFk~~~e~~ 211 (217)
T COG5637 138 ERIQWESLPGARV-E-NSGAVRFYDAP-GDSTEVKVTLSYRPPGGLLGAVVAKLFGEEPEQQIQDDLERFKEYQENG 211 (217)
T ss_pred cEEeeecCCCCcC-C-CCccEEeeeCC-CCceEEEEEEEecCCccHHHHHHHHHhccchHHHHHHHHHHHHHHHHcc
Confidence 9999999988531 2 24456776665 5678888888888777654443333322 23355666666666653
No 37
>cd08891 SRPBCC_CalC Ligand-binding SRPBCC domain of Micromonospora echinospora CalC and related proteins. This subfamily includes Micromonospora echinospora CalC (MeCalC) and related proteins. These proteins belong to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins which bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. MeCalC confers resistance to the enediyne, calicheamicin gamma 1 (CLM). Enediyne antibiotics are antitumor agents. Enediynes have an in vitro and in vivo role as DNA damaging agents; they consist of a DNA recognition unit (e.g., aryltetrasaccharide of CLM), an activating component (e.g., methyl trisulfide of CLM), which promotes cycloaromatization, and the enediyne warhead which cycloaromatizes to a reactive diradical species, resulting in oxidative strand cleavage of the targeted DNA sequence. MeCalC confers resistance to CLM by a self sacrificing mechanism: the transient enediyne diradical speci
Probab=97.63 E-value=0.0026 Score=49.76 Aligned_cols=101 Identities=14% Similarity=-0.025 Sum_probs=55.0
Q ss_pred EEEEEEcCChHHHHHHHhCCCCCcccccc-------ceEEEEecCCCCCCeEEEEEEecCCCcceeEEEEeeecCCCcEE
Q 038201 53 YAVQTINAPLPAVWSVVRRFDNPQAYKHF-------LKSCHVINGDGHVGTLREVHVISGLPAANSTERLEILDDEHHVL 125 (201)
Q Consensus 53 ~v~~~I~ApadkVW~vv~dF~~pk~~p~~-------V~s~e~~eGdg~vGsvR~vt~~~G~p~~~v~ERL~~lDde~~~~ 125 (201)
..++.|+||+++||+++.+ ..-+||.+- ...|++.--.| |..+ +...+|. ....=++.++|+.+ .+
T Consensus 3 ~~~~~i~Ap~e~Vw~a~t~-~l~~W~~p~~~~~~~~~~~~~~d~~~G--G~~~-~~~~~g~--~~~~g~v~~v~p~~-~l 75 (149)
T cd08891 3 RKSVTVPAPPERAFEVFTE-GFGAWWPPEYHFVFSPGAEVVFEPRAG--GRWY-EIGEDGT--ECEWGTVLAWEPPS-RL 75 (149)
T ss_pred EEEEEecCCHHHHHHHHHh-chhhccCCCcccccCCCccEEEcccCC--cEEE-EecCCCc--EeceEEEEEEcCCC-EE
Confidence 4578999999999999988 335776542 24455421122 4443 2222332 12334667776554 66
Q ss_pred EEEEEec-c-cCCC--CeeEEEEEEeecCCCceEEEEEEE
Q 038201 126 SFSVIGG-D-HRLN--NYRSVTTLHASPCGTGTVVVESYV 161 (201)
Q Consensus 126 sY~vveg-~-~~~~--~Y~ati~v~p~~~~~~T~v~Ws~~ 161 (201)
+|+-.-+ + .+.. .-..++++.|.+ +++|.+.=.-.
T Consensus 76 ~~tw~~~~~~~~~~~~~t~vt~~l~~~~-~~gT~ltl~~~ 114 (149)
T cd08891 76 VFTWQINADWRPDPDKASEVEVRFEAVG-AEGTRVELEHR 114 (149)
T ss_pred EEEeccCCCcCcCCCCceEEEEEEEECC-CCCeEEEEEEe
Confidence 6665421 1 1122 224456677653 16787765433
No 38
>PF08327 AHSA1: Activator of Hsp90 ATPase homolog 1-like protein; InterPro: IPR013538 This family includes eukaryotic, prokaryotic and archaeal proteins that bear similarity to a C-terminal region of human activator of 90 kDa heat shock protein ATPase homologue 1 (AHSA1/p38, O95433 from SWISSPROT). This protein is known to interact with the middle domain of Hsp90, and stimulate its ATPase activity []. It is probably a general up regulator of Hsp90 function, particularly contributing to its efficiency in conditions of increased stress []. p38 is also known to interact with the cytoplasmic domain of the VSV G protein, and may thus be involved in protein transport []. It has also been reported as being under expressed in Down's syndrome. This region is found repeated in two members of this family (Q8XY04 from SWISSPROT and Q6MH87 from SWISSPROT). ; GO: 0006950 response to stress; PDB: 2KEW_A 2KTE_A 2IL5_A 1ZXF_A 2L65_A 2GKD_A 1XN6_A 3OTL_B 2LCG_A 3Q63_D ....
Probab=97.26 E-value=0.0036 Score=46.49 Aligned_cols=122 Identities=16% Similarity=0.127 Sum_probs=62.9
Q ss_pred cCChHHHHHHHhCCCCCccc-cccceEEEEecCCCCCCeEEEEEEecCCCcceeEEEEeeecCCCcEEEEEEEecccC-C
Q 038201 59 NAPLPAVWSVVRRFDNPQAY-KHFLKSCHVINGDGHVGTLREVHVISGLPAANSTERLEILDDEHHVLSFSVIGGDHR-L 136 (201)
Q Consensus 59 ~ApadkVW~vv~dF~~pk~~-p~~V~s~e~~eGdg~vGsvR~vt~~~G~p~~~v~ERL~~lDde~~~~sY~vveg~~~-~ 136 (201)
+||+++||+++.+....+.| .......+.. .| |+++... .+| ......=+++++++.. .|.|+.--++.. -
T Consensus 1 ~ap~e~Vw~a~t~~~~~~~W~~~~~~~~~~~--~G--g~~~~~~-~~g-~~~~~~~~v~~~~p~~-~i~~~~~~~~~~~~ 73 (124)
T PF08327_consen 1 DAPPERVWEALTDPEGLAQWFTTSEAEMDFR--PG--GSFRFMD-PDG-GEFGFDGTVLEVEPPE-RIVFTWRMPDDPDG 73 (124)
T ss_dssp SSSHHHHHHHHHSHHHHHHHSEEEEEEEECS--TT--EEEEEEE-TTS-EEEEEEEEEEEEETTT-EEEEEEEEETSSSC
T ss_pred CcCHHHHHHHHCCHhHHhhccCCCcceeeee--cC--CEEEEEe-cCC-CCceeeEEEEEEeCCE-EEEEEEEccCCCCC
Confidence 69999999999999884444 3222222221 22 4444412 333 2223333477776554 577775544332 2
Q ss_pred CCeeEEEEEEeecCCCceEEEEEEEeeCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 038201 137 NNYRSVTTLHASPCGTGTVVVESYVCDVPPGNTREETCTFVDTIVRCNLQSLAQISE 193 (201)
Q Consensus 137 ~~Y~ati~v~p~~~~~~T~v~Ws~~~d~p~g~~~e~~~~~v~~i~~~~L~~La~~~e 193 (201)
.....++.+.+. +++|.+.=...-- +. .+.....+..-....|+.|++.+|
T Consensus 74 ~~~~v~~~~~~~--~~~T~l~~~~~~~-~~---~~~~~~~~~~gw~~~l~~L~~~lE 124 (124)
T PF08327_consen 74 PESRVTFEFEEE--GGGTRLTLTHSGF-PD---DDEEEEGMEQGWEQMLDRLKAYLE 124 (124)
T ss_dssp EEEEEEEEEEEE--TTEEEEEEEEEEE-HS---HHHHHHCHHHHHHHHHHHHHHHHH
T ss_pred CceEEEEEEEEc--CCcEEEEEEEEcC-Cc---cHHHHHHHHHHHHHHHHHHHHHhC
Confidence 344556677773 4667554432211 11 112111033334556788887765
No 39
>COG3832 Uncharacterized conserved protein [Function unknown]
Probab=97.17 E-value=0.012 Score=46.67 Aligned_cols=101 Identities=13% Similarity=0.049 Sum_probs=57.0
Q ss_pred eEEEEEEEcCChHHHHHHHhCCCC-CccccccceEEEEecCCCCCCeEEEEEEecCCCcceeEEEEeeecCCCc-EEEEE
Q 038201 51 CSYAVQTINAPLPAVWSVVRRFDN-PQAYKHFLKSCHVINGDGHVGTLREVHVISGLPAANSTERLEILDDEHH-VLSFS 128 (201)
Q Consensus 51 ~s~v~~~I~ApadkVW~vv~dF~~-pk~~p~~V~s~e~~eGdg~vGsvR~vt~~~G~p~~~v~ERL~~lDde~~-~~sY~ 128 (201)
...++..|++|+++||+++.+-.. .+||.+-=.+.++.-| .+....+...+| +.....-+..++++..| .|+|.
T Consensus 9 ~~~~er~i~aP~e~Vf~A~Tdpe~l~~W~~~~~~~~d~r~g---g~~~~~~~~~~g-~~~~~~~~~~~v~p~~rIv~tw~ 84 (149)
T COG3832 9 TLEIERLIDAPPEKVFEALTDPELLARWFMPGGAEFDARTG---GGERVRFRGPDG-PVHSFEGEYLEVVPPERIVFTWD 84 (149)
T ss_pred eEEEEEeecCCHHHHHHHhcCHHHHHhhcCCCCCccceecC---CceEEeeecCCC-CeeecceEEEEEcCCcEEEEEec
Confidence 346789999999999999999998 7877521111122112 123334444443 22244556666655442 34455
Q ss_pred EEecccCCCCeeEEEEEEeecCCCceE
Q 038201 129 VIGGDHRLNNYRSVTTLHASPCGTGTV 155 (201)
Q Consensus 129 vveg~~~~~~Y~ati~v~p~~~~~~T~ 155 (201)
.-+++.+...-..++++.+..+++++.
T Consensus 85 ~~~~~~~~~~~~v~~~l~~~~~g~~~~ 111 (149)
T COG3832 85 FDEDGEPFLKSLVTITLTPEDDGGTTT 111 (149)
T ss_pred cCCCCCcccCceEEEEEEEecCCCcEE
Confidence 554444444556677888865433333
No 40
>cd08892 SRPBCC_Aha1 Putative hydrophobic ligand-binding SRPBCC domain of the Hsp90 co-chaperone Aha1 and related proteins. This subfamily includes the C-terminal SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of Aha1, and related domains. Proteins in this group belong to the SRPBCC domain superfamily of proteins which bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Aha1 is one of several co-chaperones, which regulate the dimeric chaperone Hsp90. Hsp90, Aha1, and other accessory proteins interact in a chaperone cycle driven by ATP binding and hydrolysis. Aha1 promotes dimerization of the N-terminal domains of Hsp90, and stimulates its low intrinsic ATPase activity. One Aha1 molecule binds per Hsp90 dimer. The N- and C- terminal domains of Aha1 cooperatively bind across the dimer interface of Hsp90. The C-terminal domain of Aha1 binds the N-terminal Hsp90 ATPase domain. Aha1 may regulate the dwell time of Hsp90 with client proteins. Aha1 m
Probab=97.15 E-value=0.028 Score=42.91 Aligned_cols=121 Identities=13% Similarity=0.071 Sum_probs=67.0
Q ss_pred EEEEEEcCChHHHHHHHhCCCC-CccccccceEEEEecCCCCCCeEEEEEEecCCCcceeEEEEeeecCCCcEEEEEEEe
Q 038201 53 YAVQTINAPLPAVWSVVRRFDN-PQAYKHFLKSCHVINGDGHVGTLREVHVISGLPAANSTERLEILDDEHHVLSFSVIG 131 (201)
Q Consensus 53 ~v~~~I~ApadkVW~vv~dF~~-pk~~p~~V~s~e~~eGdg~vGsvR~vt~~~G~p~~~v~ERL~~lDde~~~~sY~vve 131 (201)
.++..|+||+++||+++.+-.. .+||.+ ..+.+...| |..+ +.+| .+.=++.++++ ++.++|+--.
T Consensus 3 ~~~r~i~ap~e~Vw~A~T~~e~l~~W~~~-~~~~d~~~G----G~~~---~~~g----~~~g~~~~i~p-~~~l~~~w~~ 69 (126)
T cd08892 3 SLTETFQVPAEELYEALTDEERVQAFTRS-PAKVDAKVG----GKFS---LFGG----NITGEFVELVP-GKKIVQKWRF 69 (126)
T ss_pred EEEEEECCCHHHHHHHHCCHHHHHhhcCC-CceecCCCC----CEEE---EeCC----ceEEEEEEEcC-CCEEEEEEEc
Confidence 5679999999999999999888 566543 333433322 3333 3344 12335666664 4455555432
Q ss_pred cccCC-CCeeEEEEEEeecCCCceEEEEEEEeeCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 038201 132 GDHRL-NNYRSVTTLHASPCGTGTVVVESYVCDVPPGNTREETCTFVDTIVRCNLQSLAQISE 193 (201)
Q Consensus 132 g~~~~-~~Y~ati~v~p~~~~~~T~v~Ws~~~d~p~g~~~e~~~~~v~~i~~~~L~~La~~~e 193 (201)
.+.+. ..-..++.+.+. +++|.+.-.-..- +.+ +....-.++-..-|++|++.++
T Consensus 70 ~~~~~~~~s~v~~~l~~~--~~gT~ltl~~~g~-~~~----~~~~~~~GW~~~~~~~l~~~~~ 125 (126)
T cd08892 70 KSWPEGHYSTVTLTFTEK--DDETELKLTQTGV-PAG----EEERTREGWERYYFESIKQTFG 125 (126)
T ss_pred CCCCCCCcEEEEEEEEEC--CCCEEEEEEEECC-CCc----hHHHHHhhHHHHHHHHHHHHhC
Confidence 22221 223455667765 4678766553322 222 2222334444456788887764
No 41
>cd08901 SRPBCC_CalC_Aha1-like_8 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=97.06 E-value=0.019 Score=44.30 Aligned_cols=127 Identities=10% Similarity=-0.050 Sum_probs=69.4
Q ss_pred EEEEEEcCChHHHHHHHhCCCC-CccccccceEEEEecCCCCCCeEEEEEEecCCCcceeEEEEeeecCCCcEEEEEEEe
Q 038201 53 YAVQTINAPLPAVWSVVRRFDN-PQAYKHFLKSCHVINGDGHVGTLREVHVISGLPAANSTERLEILDDEHHVLSFSVIG 131 (201)
Q Consensus 53 ~v~~~I~ApadkVW~vv~dF~~-pk~~p~~V~s~e~~eGdg~vGsvR~vt~~~G~p~~~v~ERL~~lDde~~~~sY~vve 131 (201)
..++.|+||+++||+.+.+-.. .+||.+ -.+.++. +|..-.+.+...++ .+.=++.++| ..+.+.|+...
T Consensus 3 ~~~~~i~ap~e~Vw~a~t~p~~l~~W~~~-~~~~~~~-----~Gg~~~~~~~~~~~--~~~g~~~~~~-p~~~l~~~w~~ 73 (136)
T cd08901 3 KTAMLIRRPVAEVFEAFVDPEITTKFWFT-GSSGRLE-----EGKTVTWDWEMYGA--SVPVNVLEIE-PNKRIVIEWGD 73 (136)
T ss_pred eEEEEecCCHHHHHHHhcCHHHhcccccc-CCCcccc-----CCCEEEEEEEccCC--ceEEEEEEEc-CCCEEEEEecC
Confidence 4578999999999999999988 677765 2234333 34333455543322 2233566675 45677787654
Q ss_pred cccCCCCeeEEEEEEeecCCCceEEEEEEEeeCCCCCCHHHHHHHH--HHHHHHHHHHHHHHHHH
Q 038201 132 GDHRLNNYRSVTTLHASPCGTGTVVVESYVCDVPPGNTREETCTFV--DTIVRCNLQSLAQISEN 194 (201)
Q Consensus 132 g~~~~~~Y~ati~v~p~~~~~~T~v~Ws~~~d~p~g~~~e~~~~~v--~~i~~~~L~~La~~~e~ 194 (201)
++ ..-..++++.+.+ +++|.+.=.- ...+.. .++...... ..=....|+.|++.+|+
T Consensus 74 ~~---~~s~v~~~l~~~~-~ggT~ltl~~-~~~~~~-~~~~~~~~~~~~~GW~~~L~~L~~~le~ 132 (136)
T cd08901 74 PG---EPTTVEWTFEELD-DGRTFVTITE-SGFPGT-DDEGLKQALGSTEGWTLVLAGLKAYLEH 132 (136)
T ss_pred CC---CCEEEEEEEEECC-CCcEEEEEEE-CCCCCC-cHHHHHHHhcCCCCHHHHHHHHHHHHhc
Confidence 31 1233467777753 3567664431 122332 221211111 11234557777777764
No 42
>PF08982 DUF1857: Domain of unknown function (DUF1857); InterPro: IPR015075 This protein has no known function. It is found in various hypothetical bacterial and fungal proteins. ; PDB: 2FFS_B.
Probab=96.97 E-value=0.021 Score=45.93 Aligned_cols=125 Identities=18% Similarity=0.292 Sum_probs=65.5
Q ss_pred ChHHHHHHHh-CCCCCccccccceEEEEecCCCCCCeEEEEEEecCCCcceeEEEEeeecCCCcEEEEEEEecccCCCCe
Q 038201 61 PLPAVWSVVR-RFDNPQAYKHFLKSCHVINGDGHVGTLREVHVISGLPAANSTERLEILDDEHHVLSFSVIGGDHRLNNY 139 (201)
Q Consensus 61 padkVW~vv~-dF~~pk~~p~~V~s~e~~eGdg~vGsvR~vt~~~G~p~~~v~ERL~~lDde~~~~sY~vveg~~~~~~Y 139 (201)
..++||.-+. .-.+|+.+-+.|.+|++++-. ..+-.|.++|+. ..++|+.... ....+.| ... ..=
T Consensus 19 Tr~QlW~GL~~kar~p~~Fvp~i~~c~Vl~e~-~~~~~R~v~fg~----~~v~E~v~~~--~~~~V~f----~~~--~Gs 85 (149)
T PF08982_consen 19 TREQLWRGLVLKARNPQLFVPGIDSCEVLSES-DTVLTREVTFGG----ATVRERVTLY--PPERVDF----AQH--DGS 85 (149)
T ss_dssp -HHHHHHHHHHHHH-GGGT-TT--EEEEEEE--SSEEEEEEEETT----EEEEEEEEEE--TTTEEEE----SSS--BEE
T ss_pred CHHHHHHHHHHHHhChhhCccccCeEEEEecC-CCeEEEEEEECC----cEEEEEEEEe--CCcEEEE----EcC--CCC
Confidence 3568999765 445599888899999998543 347799999933 4899998753 3447777 111 111
Q ss_pred eEEEEEEeecCCCceEEEEEEEeeCC---CCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 038201 140 RSVTTLHASPCGTGTVVVESYVCDVP---PGNTR-EETCTFVDTIVRCNLQSLAQISENMAARS 199 (201)
Q Consensus 140 ~ati~v~p~~~~~~T~v~Ws~~~d~p---~g~~~-e~~~~~v~~i~~~~L~~La~~~e~~~~~~ 199 (201)
+-++.+.. ++++.=.+..+|....| ++..+ .+...++...|+.....--+.+.+++.+.
T Consensus 86 ~lt~~I~e-~~~g~L~ltf~ye~~~p~~~~gs~e~~~~~~~~~~ay~~a~~~Ti~~iRe~~~~G 148 (149)
T PF08982_consen 86 SLTNIISE-PEPGDLFLTFTYEWRLPGVEPGSPEAKAYQEFYKSAYKEADIDTIRVIRELAKEG 148 (149)
T ss_dssp EEEEEEEE-EETTEEEEEEEEEEE----S---------BHHHHHHHHHHHHHHHHHHHHHH---
T ss_pred EEEEEEec-CCCCcEEEEEEEEecccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 22333332 22233345556665544 33232 34455666777666555556666666543
No 43
>cd08863 SRPBCC_DUF1857 DUF1857, an uncharacterized ligand-binding domain of the SRPBCC domain superfamily. Uncharacterized family of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins
Probab=96.92 E-value=0.12 Score=41.34 Aligned_cols=64 Identities=19% Similarity=0.302 Sum_probs=49.1
Q ss_pred ChHHHHHHH-hCCCCCccccccceEEEEecCCCCCCeEEEEEEecCCCcceeEEEEeeecCCCcEEEEEEEe
Q 038201 61 PLPAVWSVV-RRFDNPQAYKHFLKSCHVINGDGHVGTLREVHVISGLPAANSTERLEILDDEHHVLSFSVIG 131 (201)
Q Consensus 61 padkVW~vv-~dF~~pk~~p~~V~s~e~~eGdg~vGsvR~vt~~~G~p~~~v~ERL~~lDde~~~~sY~vve 131 (201)
..+++|.-+ ..-.+|+.+-|.|.+|++++.++ ---.|.++|+.. .++|++.. + ....+.|.+-.
T Consensus 18 Tr~QlW~GL~~kar~p~~Fvp~i~~c~Vl~e~~-~~l~Rel~f~~~----~v~e~vt~-~-~~~~v~f~~~~ 82 (141)
T cd08863 18 TRAQLWRGLVLRAREPQLFVPGLDRCEVLSESG-TVLERELTFGPA----KIRETVTL-E-PPSRVHFLQAD 82 (141)
T ss_pred CHHHHHhHHHhhhCCchhcccccceEEEEecCC-CEEEEEEEECCc----eEEEEEEe-c-CCcEEEEEecC
Confidence 467999965 56666999988999999986653 246799999764 78999874 3 45578888776
No 44
>COG4276 Uncharacterized conserved protein [Function unknown]
Probab=96.58 E-value=0.18 Score=40.24 Aligned_cols=126 Identities=23% Similarity=0.317 Sum_probs=80.7
Q ss_pred EEEEEcCChHHHHHHHhCCCC-CccccccceEEEEecCCCCCCeEEEEEEe---cCCCcc-eeEEEEee--ecCCCcEEE
Q 038201 54 AVQTINAPLPAVWSVVRRFDN-PQAYKHFLKSCHVINGDGHVGTLREVHVI---SGLPAA-NSTERLEI--LDDEHHVLS 126 (201)
Q Consensus 54 v~~~I~ApadkVW~vv~dF~~-pk~~p~~V~s~e~~eGdg~vGsvR~vt~~---~G~p~~-~v~ERL~~--lDde~~~~s 126 (201)
....|+||.+.||+....-++ ..+-|+.+ +..-+|+ .++..-++.+. -|+|+. .-+-|+++ .|+- ..++
T Consensus 6 ~~~~i~aP~E~VWafhsrpd~lq~LTppw~--VV~p~g~-eitqgtri~m~l~pfglp~~~tW~Arhte~~~d~~-~~Ft 81 (153)
T COG4276 6 YRTTITAPHEMVWAFHSRPDALQRLTPPWI--VVLPLGS-EITQGTRIAMGLTPFGLPAGLTWVARHTESGFDNG-SRFT 81 (153)
T ss_pred EeeEecCCHHHHhhhhcCccHHHhcCCCcE--EeccCCC-cccceeeeeecceeecCCCCceEEEEeeecccCCc-ceee
Confidence 356899999999999999998 45556655 3333453 23333444433 345543 44566666 6543 4677
Q ss_pred EEEEecccCCCCeeEEEEEEeecCCCceEEEEEEEeeCCCCCCHH-----HHHHHHHHHHHHHH
Q 038201 127 FSVIGGDHRLNNYRSVTTLHASPCGTGTVVVESYVCDVPPGNTRE-----ETCTFVDTIVRCNL 185 (201)
Q Consensus 127 Y~vveg~~~~~~Y~ati~v~p~~~~~~T~v~Ws~~~d~p~g~~~e-----~~~~~v~~i~~~~L 185 (201)
=..+.|+.+.-+.+=+=++.+. +++|+.+-+..|+.|-+..-+ .+..+++.+|+.--
T Consensus 82 Dv~i~gPfp~~~WrHtH~F~~e--gg~TvliD~Vsye~p~g~~~~~~g~~l~q~~l~~mFr~Rh 143 (153)
T COG4276 82 DVCITGPFPALNWRHTHNFVDE--GGGTVLIDSVSYELPAGTLTGMFGYRLTQLILDLMFRSRH 143 (153)
T ss_pred eeeecCCccceeeEEEeeeecC--CCcEEEEeeEEeeccCcceechhhhhhHHHHHHHHHHHHH
Confidence 7778888876678888888765 578999999889987763322 33344555554433
No 45
>COG2867 Oligoketide cyclase/lipid transport protein [Lipid metabolism]
Probab=96.13 E-value=0.14 Score=41.12 Aligned_cols=136 Identities=10% Similarity=0.085 Sum_probs=91.6
Q ss_pred EEEEEEcCChHHHHHHHhCCCC-CccccccceEEEEecCCCCCCeEEEEEEecCCCcceeEEEEeeecCCCcEEEEEEEe
Q 038201 53 YAVQTINAPLPAVWSVVRRFDN-PQAYKHFLKSCHVINGDGHVGTLREVHVISGLPAANSTERLEILDDEHHVLSFSVIG 131 (201)
Q Consensus 53 ~v~~~I~ApadkVW~vv~dF~~-pk~~p~~V~s~e~~eGdg~vGsvR~vt~~~G~p~~~v~ERL~~lDde~~~~sY~vve 131 (201)
..+..|+.+|++++++|.|-.. |++.|-.. ...+.+.++ ..-+-.++++-++--+++.=|.. +++..++|.-.+++
T Consensus 5 ~~s~lv~y~a~~mF~LV~dV~~YP~FlP~C~-~s~v~~~~~-~~l~A~l~V~~k~i~e~F~Trv~-~~~~~~~I~~~l~~ 81 (146)
T COG2867 5 ERTALVPYSASQMFDLVNDVESYPEFLPWCS-ASRVLERNE-RELIAELDVGFKGIRETFTTRVT-LKPTARSIDMKLID 81 (146)
T ss_pred EeeeeccCCHHHHHHHHHHHHhCchhccccc-cceEeccCc-ceeEEEEEEEhhheeeeeeeeee-ecCchhhhhhhhhc
Confidence 3457889999999999999988 99886544 444555553 23455555543322234555544 55666688888898
Q ss_pred cccCCCCeeEEEEEEeecCCCceEEEEEEEeeCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 038201 132 GDHRLNNYRSVTTLHASPCGTGTVVVESYVCDVPPGNTREETCTFVDTIVRCNLQSLAQISENMAAR 198 (201)
Q Consensus 132 g~~~~~~Y~ati~v~p~~~~~~T~v~Ws~~~d~p~g~~~e~~~~~v~~i~~~~L~~La~~~e~~~~~ 198 (201)
|+ ++-..++=++.|.. +++|.|.--.+|+... -.....+..++...-..+.+.+++.|.+
T Consensus 82 GP--Fk~L~~~W~F~pl~-~~~ckV~f~ldfeF~s----~ll~~~~g~~f~~~a~~mv~aF~kRA~~ 141 (146)
T COG2867 82 GP--FKYLKGGWQFTPLS-EDACKVEFFLDFEFKS----RLLGALIGPVFKRLASKMVEAFEKRAKE 141 (146)
T ss_pred CC--hhhhcCceEEEECC-CCceEEEEEEEeeehh----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 95 56667777888864 5789999887777532 2333445566666777777788887764
No 46
>PTZ00220 Activator of HSP-90 ATPase; Provisional
Probab=95.43 E-value=0.2 Score=38.79 Aligned_cols=89 Identities=9% Similarity=0.030 Sum_probs=46.8
Q ss_pred EcCChHHHHHHHhCCCC-CccccccceEEEEecCCCCCCeEEEEEEecCCCcceeEEEEeeecCCCc-EEEEEEEecccC
Q 038201 58 INAPLPAVWSVVRRFDN-PQAYKHFLKSCHVINGDGHVGTLREVHVISGLPAANSTERLEILDDEHH-VLSFSVIGGDHR 135 (201)
Q Consensus 58 I~ApadkVW~vv~dF~~-pk~~p~~V~s~e~~eGdg~vGsvR~vt~~~G~p~~~v~ERL~~lDde~~-~~sY~vveg~~~ 135 (201)
++||+++||.++-+-+. .+||.+.....++..| |..+.+ .|. +.=+.+++|+.++ .++|+..+.+.
T Consensus 1 f~ap~e~Vw~A~Tdp~~l~~w~~~~~~~~d~~~G----G~f~~~---~~~----~~G~~~ev~pp~rlv~tw~~~~~~~- 68 (132)
T PTZ00220 1 FYVPPEVLYNAFLDAYTLTRLSLGSPAEMDAKVG----GKFSLF---NGS----VEGEFTELEKPKKIVQKWRFRDWEE- 68 (132)
T ss_pred CCCCHHHHHHHHcCHHHHHHHhcCCCccccCCcC----CEEEEe---cCc----eEEEEEEEcCCCEEEEEEecCCCCC-
Confidence 47999999999999887 5676442222322222 333332 231 2335566765542 23444432111
Q ss_pred CCCeeEEEEEEeecCCCceEEEEE
Q 038201 136 LNNYRSVTTLHASPCGTGTVVVES 159 (201)
Q Consensus 136 ~~~Y~ati~v~p~~~~~~T~v~Ws 159 (201)
-..-..++++.|.+ +++|.+.=.
T Consensus 69 ~~~s~vt~~~~~~~-~g~T~lt~~ 91 (132)
T PTZ00220 69 DVYSKVTIEFRAVE-EDHTELKLT 91 (132)
T ss_pred CCceEEEEEEEeCC-CCcEEEEEE
Confidence 11234567777753 356866544
No 47
>cd08905 START_STARD1-like Cholesterol-binding START domain of mammalian STARD1 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD1 (also known as StAR) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD1 has a high affinity for cholesterol. It can reduce macrophage lipid content and inflammatory status. It plays an essential role in steroidogenic tissues: transferring the steroid precursor, cholesterol, from the outer to the inner mitochondrial membrane, across the aqueous space. Mutations in the gene encoding STARD1/StAR can cause lipid congenital adrenal hyperplasia (CAH), an autosomal recessive disorder characterized by a steroid synthesis deficiency and an accumulation of cholesterol in
Probab=94.85 E-value=1.1 Score=37.44 Aligned_cols=143 Identities=12% Similarity=0.021 Sum_probs=77.9
Q ss_pred eEEEEEEEcCChHHHH-HHHhCCCC-CccccccceEEEEecC-CCCCCeEEEEEEec-CCCc---ceeEEEEeeecCCCc
Q 038201 51 CSYAVQTINAPLPAVW-SVVRRFDN-PQAYKHFLKSCHVING-DGHVGTLREVHVIS-GLPA---ANSTERLEILDDEHH 123 (201)
Q Consensus 51 ~s~v~~~I~ApadkVW-~vv~dF~~-pk~~p~~V~s~e~~eG-dg~vGsvR~vt~~~-G~p~---~~v~ERL~~lDde~~ 123 (201)
---.+.+|++|+++++ .++-|... ++ |-+.+.++++++- |...=-++.+...- +++. ..+.-|...-++.+.
T Consensus 50 ~~k~e~~i~~~~~~l~~~l~~d~e~~~~-W~~~~~~~~vl~~id~~~~i~y~~~~p~p~~~vs~RD~V~~~~~~~~~~~~ 128 (209)
T cd08905 50 VFRLEVVVDQPLDNLYSELVDRMEQMGE-WNPNVKEVKILQRIGKDTLITHEVAAETAGNVVGPRDFVSVRCAKRRGSTC 128 (209)
T ss_pred EEEEEEEecCCHHHHHHHHHhchhhhce-ecccchHHHHHhhcCCCceEEEEEeccCCCCccCccceEEEEEEEEcCCcE
Confidence 3346789999999999 77778888 66 4467777777643 21111123222111 1112 123333333334443
Q ss_pred EEEEEEEeccc-C-------CCCeeEEEEEEeecC-CCceEEEEEEEeeCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038201 124 VLSFSVIGGDH-R-------LNNYRSVTTLHASPC-GTGTVVVESYVCDVPPGNTREETCTFVDTIVRCNLQSLAQISEN 194 (201)
Q Consensus 124 ~~sY~vveg~~-~-------~~~Y~ati~v~p~~~-~~~T~v~Ws~~~d~p~g~~~e~~~~~v~~i~~~~L~~La~~~e~ 194 (201)
.+....++-+. | ..+..+...+.|.++ .++|.++|-...|+-.....-.+..++-..-...|..|++.++.
T Consensus 129 ~~~~~s~~~~~~P~~~~~VR~~~~~~~w~l~p~~~~~~~t~v~~~~~~DpkG~iP~~lvN~~~~~~~~~~~~~Lr~~~~~ 208 (209)
T cd08905 129 VLAGMATHFGLMPEQKGFIRAENGPTCIVLRPLAGDPSKTKLTWLLSIDLKGWLPKSIINQVLSQTQVDFANHLRQRMAS 208 (209)
T ss_pred EEEEEeecCCCCCCCCCeEEEEeeccEEEEEECCCCCCceEEEEEEeecCCCCCCHHHHHHHhHHhHHHHHHHHHHHHhc
Confidence 32222222221 1 234445566888753 26799999999995433444455555454555667777777653
No 48
>cd08903 START_STARD5-like Lipid-binding START domain of mammalian STARD5 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD5, and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD5 is ubiquitously expressed, with highest levels in liver and kidney. STARD5 functions in the kidney within the proximal tubule cells where it is associated with the Endoplasmic Reticulum (ER), and may participate in ER-associated cholesterol transport. It binds cholesterol and 25-hydroxycholesterol. Expression of the gene encoding STARD5 is increased by ER stress, and its mRNA and protein levels are elevated in a type I diabetic mouse model of human diabetic nephropathy.
Probab=94.50 E-value=2.5 Score=35.35 Aligned_cols=141 Identities=11% Similarity=0.069 Sum_probs=75.0
Q ss_pred EEEEEEEcCChHHHHHHHhCCCC---CccccccceEEEEecC-CCCCCeEEEEEEec--CCCc---c-eeEEEEeeecCC
Q 038201 52 SYAVQTINAPLPAVWSVVRRFDN---PQAYKHFLKSCHVING-DGHVGTLREVHVIS--GLPA---A-NSTERLEILDDE 121 (201)
Q Consensus 52 s~v~~~I~ApadkVW~vv~dF~~---pk~~p~~V~s~e~~eG-dg~vGsvR~vt~~~--G~p~---~-~v~ERL~~lDde 121 (201)
--.+.+|+++++++++++.|-.+ ++ |-+.+.++++++- |+...-++. .... ++.. . .........++.
T Consensus 48 ~k~e~~i~~s~~~~~~~l~d~~~~~r~~-W~~~~~~~~vle~id~~~~i~~~-~~p~~~~~~vs~RDfV~~~~~~~~~d~ 125 (208)
T cd08903 48 YKGEGIVYATLEQVWDCLKPAAGGLRVK-WDQNVKDFEVVEAISDDVSVCRT-VTPSAAMKIISPRDFVDVVLVKRYEDG 125 (208)
T ss_pred EEEEEEecCCHHHHHHHHHhccchhhhh-hhhccccEEEEEEecCCEEEEEE-ecchhcCCCcCCCceEEEEEEEecCCc
Confidence 44678899999999999986654 45 6578888888765 422222222 1111 1101 1 222222333333
Q ss_pred CcEEEEEEEeccc--CCCCee------EEEEEEeec-CCCceEEEEEEEeeCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 038201 122 HHVLSFSVIGGDH--RLNNYR------SVTTLHASP-CGTGTVVVESYVCDVPPGNTREETCTFVDTIVRCNLQSLAQIS 192 (201)
Q Consensus 122 ~~~~sY~vveg~~--~~~~Y~------ati~v~p~~-~~~~T~v~Ws~~~d~p~g~~~e~~~~~v~~i~~~~L~~La~~~ 192 (201)
...+.+..++-+. +-++|. +...+.|.. ++++|.++|-...|+-.......+..++-..-...|..|++.+
T Consensus 126 ~i~i~~~sv~h~~~P~~~~~VR~~~~~~g~~~~~~~~~~~~t~v~~~~~~DpkG~iP~~lvn~~~~~~~~~~~~~Lr~~~ 205 (208)
T cd08903 126 TISSNATNVEHPLCPPQAGFVRGFNHPCGCFCEPVPGEPDKTQLVSFFQTDLSGYLPQTVVDSFFPASMAEFYNNLTKAV 205 (208)
T ss_pred eEEEeEEeccCCCCCCCCCeEEEeeeccEEEEEECCCCCCceEEEEEEEeccCCCcCHHHHHHHhhHHHHHHHHHHHHHH
Confidence 3333443333321 122221 222334432 2467999999999964334444555555444456677777776
Q ss_pred HH
Q 038201 193 EN 194 (201)
Q Consensus 193 e~ 194 (201)
.+
T Consensus 206 ~~ 207 (208)
T cd08903 206 KA 207 (208)
T ss_pred hh
Confidence 54
No 49
>cd00177 START Lipid-binding START domain of mammalian STARD1-STARD15 and related proteins. This family includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, and related domains, such as the START domain of the Arabidopsis homeobox protein GLABRA 2. The mammalian STARDs are grouped into 8 subfamilies. This family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some members of this family, specific lipids that bind in this pocket are known; these include cholesterol (STARD1/STARD3/ STARD4/STARD5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2/ STARD7/STARD10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). The START domain is found either alone or in association with other domains. Mammalian STARDs participate in the control of various cellular pro
Probab=94.46 E-value=1.9 Score=33.93 Aligned_cols=152 Identities=15% Similarity=0.070 Sum_probs=81.9
Q ss_pred cccccccCCCCCCceeEEEEEEEcCChHHHHHHHhCCCCCccccccceEEEEecCCCCCCeEEEEEEecCCCc---c-ee
Q 038201 36 TLPFYHKHTVGPNQCCSYAVQTINAPLPAVWSVVRRFDNPQAYKHFLKSCHVINGDGHVGTLREVHVISGLPA---A-NS 111 (201)
Q Consensus 36 ~~~~~~~~~~~~~~~~s~v~~~I~ApadkVW~vv~dF~~pk~~p~~V~s~e~~eGdg~vGsvR~vt~~~G~p~---~-~v 111 (201)
.+.-|-....+.+....-.+.+|++|++.||+++.+...-+.|-+.+.++++++-.+..-.+....+....|. . .+
T Consensus 25 ~v~vy~~~~~~~~~~~~k~~~~i~~~~~~v~~~l~d~~~~~~w~~~~~~~~vl~~~~~~~~i~~~~~~~p~p~~~Rdfv~ 104 (193)
T cd00177 25 GVKIYTKPYEDSGLKLLKAEGVIPASPEQVFELLMDIDLRKKWDKNFEEFEVIEEIDEHTDIIYYKTKPPWPVSPRDFVY 104 (193)
T ss_pred cEEEEEecCCCCCceeEEEEEEECCCHHHHHHHHhCCchhhchhhcceEEEEEEEeCCCeEEEEEEeeCCCccCCccEEE
Confidence 3444444555445555666789999999999999998883335568888888765322234445555444332 1 22
Q ss_pred EEEEeeecCCC-cEEEEEEEecc-cC-------CCCeeEEEEEEeecCCCceEEEEEEEeeCCCCCCHHHHHHHHHHHHH
Q 038201 112 TERLEILDDEH-HVLSFSVIGGD-HR-------LNNYRSVTTLHASPCGTGTVVVESYVCDVPPGNTREETCTFVDTIVR 182 (201)
Q Consensus 112 ~ERL~~lDde~-~~~sY~vveg~-~~-------~~~Y~ati~v~p~~~~~~T~v~Ws~~~d~p~g~~~e~~~~~v~~i~~ 182 (201)
..... .++++ ..+...=++.+ .+ ...+.+...+.|. ++++|.+.+....|+ .|.... .+++.+..
T Consensus 105 ~~~~~-~~~~~~~~~~~~Si~~~~~p~~~~~vR~~~~~~~~~i~~~-~~~~~~vt~~~~~D~-~g~iP~---~~~~~~~~ 178 (193)
T cd00177 105 LRRRR-KLDDGTYVIVSKSVDHDSHPKEKGYVRAEIKLSGWIIEPL-DPGKTKVTYVLQVDP-KGSIPK---SLVNSAAK 178 (193)
T ss_pred EEEEE-EcCCCeEEEEEeecCCCCCCCCCCcEEEEEEccEEEEEEC-CCCCEEEEEEEeeCC-CCCccH---HHHHhhhh
Confidence 22222 23322 22222222221 11 1223344566776 357899999988885 454432 23444444
Q ss_pred HHHHHHHHHHH
Q 038201 183 CNLQSLAQISE 193 (201)
Q Consensus 183 ~~L~~La~~~e 193 (201)
..+..+.+.+.
T Consensus 179 ~~~~~~~~~~~ 189 (193)
T cd00177 179 KQLASFLKDLR 189 (193)
T ss_pred hccHHHHHHHH
Confidence 44444444433
No 50
>cd08868 START_STARD1_3_like Cholesterol-binding START domain of mammalian STARD1, -3 and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD1 (also known as StAR) and STARD3 (also known as metastatic lymph node 64/MLN64). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. This STARD1-like subfamily has a high affinity for cholesterol. STARD1/StAR can reduce macrophage lipid content and inflammatory status. It plays an essential role in steroidogenic tissues: transferring the steroid precursor, cholesterol, from the outer to the inner mitochondrial membrane, across the aqueous space. Mutations in the gene encoding STARD1/StAR can cause lipid congenital adrenal hyperplasia (CAH), an autosomal recessive disorder characterized by a steroid synth
Probab=94.32 E-value=2.6 Score=34.89 Aligned_cols=158 Identities=11% Similarity=0.070 Sum_probs=83.5
Q ss_pred cccccccCCCCCCceeEEEEEEEcCChHHHHH-HHhCCCCCccccccceEEEEecC-CCCCCeEEEEEEec-CCCcc---
Q 038201 36 TLPFYHKHTVGPNQCCSYAVQTINAPLPAVWS-VVRRFDNPQAYKHFLKSCHVING-DGHVGTLREVHVIS-GLPAA--- 109 (201)
Q Consensus 36 ~~~~~~~~~~~~~~~~s~v~~~I~ApadkVW~-vv~dF~~pk~~p~~V~s~e~~eG-dg~vGsvR~vt~~~-G~p~~--- 109 (201)
.+.-+-.+.++..+ .--.+..|++|+++|+. ++.|.+..+-|-+.+..+++++- |+..--+..+.... +.+..
T Consensus 35 ~i~i~~r~~~~~~~-~~k~~~~i~~~~~~v~~~l~~d~~~~~~Wd~~~~~~~~i~~~d~~~~i~y~~~~~~~~~~vs~RD 113 (208)
T cd08868 35 GDVVYSRNVPGVGK-VFRLTGVLDCPAEFLYNELVLNVESLPSWNPTVLECKIIQVIDDNTDISYQVAAEAGGGLVSPRD 113 (208)
T ss_pred CCEEEEEEcCCCce-EEEEEEEEcCCHHHHHHHHHcCccccceecCcccceEEEEEecCCcEEEEEEecCcCCCcccccc
Confidence 55666666666553 35557899999999985 66788884445567777777654 32111122222111 12221
Q ss_pred eeEEEEeeecCCCcEEEEEEEecc-c-------CCCCeeEEEEEEeecCC-CceEEEEEEEeeCCCCCCHHHH-HHHHHH
Q 038201 110 NSTERLEILDDEHHVLSFSVIGGD-H-------RLNNYRSVTTLHASPCG-TGTVVVESYVCDVPPGNTREET-CTFVDT 179 (201)
Q Consensus 110 ~v~ERL~~lDde~~~~sY~vveg~-~-------~~~~Y~ati~v~p~~~~-~~T~v~Ws~~~d~p~g~~~e~~-~~~v~~ 179 (201)
.+--|-...++....+...-++-+ . +...+.+...+.|.+++ ++|.++|-...|+ -|.-+.-. ..++..
T Consensus 114 fV~~r~~~~~~~~~~i~~~sv~h~~~P~~~g~VR~~~~~~~~~i~p~~~~~~~t~v~~~~~~Dp-~G~iP~~lvN~~~~~ 192 (208)
T cd08868 114 FVSLRHWGIRENCYLSSGVSVEHPAMPPTKNYVRGENGPGCWILRPLPNNPNKCNFTWLLNTDL-KGWLPQYLVDQALAS 192 (208)
T ss_pred eEEEEEEEecCCeEEEEEEeccCCCCCCCCCeEEEeccccEEEEEECCCCCCceEEEEEEEECC-CCCCcceeeehhhHH
Confidence 222222223333333333323311 1 23445566678886532 6799999988885 45444432 222333
Q ss_pred HHHHHHHHHHHHHHHH
Q 038201 180 IVRCNLQSLAQISENM 195 (201)
Q Consensus 180 i~~~~L~~La~~~e~~ 195 (201)
..-..+..|++.++++
T Consensus 193 ~~~~~~~~Lr~~~~~~ 208 (208)
T cd08868 193 VLLDFMKHLRKRIATL 208 (208)
T ss_pred HHHHHHHHHHHHHhhC
Confidence 3344566777766653
No 51
>cd08877 START_2 Uncharacterized subgroup of the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domain family. Functionally uncharacterized subgroup of the START domain family. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some mammalian members of the START family (STARDs), it is known which lipids bind in this pocket; these include cholesterol (STARD1, -3, -4, and -5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2, -7, and -10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). Mammalian STARDs participate in the control of various cellular processes, including lipid trafficking between intracellular compartments, lipid metabolism, and modulation of signaling events. Mutation or altered expression of STARDs is linked to diseases such as cancer, genetic disorders, a
Probab=94.16 E-value=2.5 Score=35.13 Aligned_cols=155 Identities=12% Similarity=0.051 Sum_probs=87.3
Q ss_pred CcccccccCCCCCCceeEEEEEEEcCChHHHHHHHhCCCC-CccccccceEEEEecCCCCCCeEEEEEEecCCCc-ceeE
Q 038201 35 ETLPFYHKHTVGPNQCCSYAVQTINAPLPAVWSVVRRFDN-PQAYKHFLKSCHVINGDGHVGTLREVHVISGLPA-ANST 112 (201)
Q Consensus 35 ~~~~~~~~~~~~~~~~~s~v~~~I~ApadkVW~vv~dF~~-pk~~p~~V~s~e~~eGdg~vGsvR~vt~~~G~p~-~~v~ 112 (201)
+.+.-+-...++..-..--++..|++|++.+.+++.|-+. ++|.| +..+++.++..+..-.+-.+.+. .|- -.-|
T Consensus 31 ~~i~v~~r~~~~~~~~~~k~e~~i~~~~~~~~~vl~d~~~~~~W~p-~~~~~~~l~~~~~~~~v~y~~~~--~PwPv~~R 107 (215)
T cd08877 31 EGIRVYYKFEPDGSLLSLRMEGEIDGPLFNLLALLNEVELYKTWVP-FCIRSKKVKQLGRADKVCYLRVD--LPWPLSNR 107 (215)
T ss_pred CCeEEEEEeCCCCCEEEEEEEEEecCChhHeEEEEehhhhHhhhcc-cceeeEEEeecCCceEEEEEEEe--CceEecce
Confidence 4555555555665556666789999999999999999988 77665 45555554332211222223322 221 0112
Q ss_pred EEE------eeecCCCcEEEEE--EEecc----------cC--------CCCeeEEEEEEeecCCCceEEEEEEEeeCCC
Q 038201 113 ERL------EILDDEHHVLSFS--VIGGD----------HR--------LNNYRSVTTLHASPCGTGTVVVESYVCDVPP 166 (201)
Q Consensus 113 ERL------~~lDde~~~~sY~--vveg~----------~~--------~~~Y~ati~v~p~~~~~~T~v~Ws~~~d~p~ 166 (201)
|=+ +.+| ++..+... -+..+ .| ...+.+-..+.|.+ +++|.+......||--
T Consensus 108 D~v~~~~~~~~~~-~~~~i~i~~~si~~~~~~~~~~~~~iP~~~~~~vR~~~~~~~~~i~p~~-~~~t~v~~~~~~DP~g 185 (215)
T cd08877 108 EAVFRGFGVDRLE-ENGQIVILLKSIDDDPEFLKLTDLDIPSTSAKGVRRIIKYYGFVITPIS-PTKCYLRFVANVDPKM 185 (215)
T ss_pred EEEEEEEEEeeec-cCCCEEEEEecCCCCcccccccCCcCCCCCCCceEEEEecceEEEEEcC-CCCeEEEEEEEcCCCc
Confidence 222 2232 33333222 12110 12 23344455677875 5679999988888433
Q ss_pred C-CCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038201 167 G-NTREETCTFVDTIVRCNLQSLAQISEN 194 (201)
Q Consensus 167 g-~~~e~~~~~v~~i~~~~L~~La~~~e~ 194 (201)
. .....+..+...+....|..|++.+++
T Consensus 186 ~~IP~~liN~~~k~~~~~~~~~l~k~~~~ 214 (215)
T cd08877 186 SLVPKSLLNFVARKFAGLLFEKIQKAAKN 214 (215)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3 345566666666666777888777664
No 52
>PF10698 DUF2505: Protein of unknown function (DUF2505); InterPro: IPR019639 This entry represents proteins found Actinobacteria and Proteobacteria. The function is not known.
Probab=94.10 E-value=2.2 Score=34.11 Aligned_cols=104 Identities=24% Similarity=0.256 Sum_probs=57.6
Q ss_pred EEEEEcCChHHHHHHHhCCCC----Cccccc---cceEEEEecCCCCCCeEEEEE-Ee-cCCCc--------c---eeEE
Q 038201 54 AVQTINAPLPAVWSVVRRFDN----PQAYKH---FLKSCHVINGDGHVGTLREVH-VI-SGLPA--------A---NSTE 113 (201)
Q Consensus 54 v~~~I~ApadkVW~vv~dF~~----pk~~p~---~V~s~e~~eGdg~vGsvR~vt-~~-~G~p~--------~---~v~E 113 (201)
++..+++|+|+||+++.|-.. -+.... -+.+++. +|+| -.++... +. +.+|. . .-.|
T Consensus 3 ~~~~~~~~~~~v~~~~~d~~y~~~r~~~~g~~~~~~~~~~~-~~~g--~~v~~~~~v~~~~lP~~~~k~v~~~l~v~~~e 79 (159)
T PF10698_consen 3 HSVEYPAPVERVWAAFTDEDYWEARCAALGADNAEVESFEV-DGDG--VRVTVRQTVPADKLPSAARKFVGGDLRVTRTE 79 (159)
T ss_pred EEEEcCCCHHHHHHHHcCHHHHHHHHHHcCCCCceEEEEEE-cCCe--EEEEEEEecChhhCCHHHHHhcCCCeEEEEEE
Confidence 568899999999999986544 122211 3444443 3443 1121111 11 12221 1 1223
Q ss_pred EEeeecCCCcEEEEEEEecccCCCCeeEEEEEEeecCCCceEEEEEEEee
Q 038201 114 RLEILDDEHHVLSFSVIGGDHRLNNYRSVTTLHASPCGTGTVVVESYVCD 163 (201)
Q Consensus 114 RL~~lDde~~~~sY~vveg~~~~~~Y~ati~v~p~~~~~~T~v~Ws~~~d 163 (201)
+-...++..+..+|++--...| -...+++.+.|. +++|.+..+..++
T Consensus 80 ~w~~~~~g~~~g~~~~~~~G~P-~~~~G~~~L~~~--~~gt~~~~~g~v~ 126 (159)
T PF10698_consen 80 TWTPLDDGRRTGTFTVSIPGAP-VSISGTMRLRPD--GGGTRLTVEGEVK 126 (159)
T ss_pred EEecCCCCeEEEEEEEEecCce-EEEEEEEEEecC--CCCEEEEEEEEEE
Confidence 3333466777777776544433 567889999884 4678777766554
No 53
>cd08871 START_STARD10-like Lipid-binding START domain of mammalian STARD10 and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD10 (also known as CGI-52, PTCP-like, and SDCCAG28). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD10 binds phophatidylcholine and phosphatidylethanolamine. This protein is widely expressed and is synthesized constitutively in many organs. It may function in the liver in the export of phospholipids into bile. It is concentrated in the sperm flagellum, and may play a role in energy metabolism. In the mammary gland it may participate in the enrichment of lipids in milk, and be a potential marker of differentiation. Its expression is induced in this gland during gestation and lactation. It is overe
Probab=93.88 E-value=3.3 Score=34.56 Aligned_cols=140 Identities=8% Similarity=0.000 Sum_probs=76.4
Q ss_pred EEEE-cCChHHHHHHHhCCCCCccccccceEEEEecCCCCCCeEEEEEEecCCCcc---eeEEEEeeecCCCcEE-EEEE
Q 038201 55 VQTI-NAPLPAVWSVVRRFDNPQAYKHFLKSCHVINGDGHVGTLREVHVISGLPAA---NSTERLEILDDEHHVL-SFSV 129 (201)
Q Consensus 55 ~~~I-~ApadkVW~vv~dF~~pk~~p~~V~s~e~~eGdg~vGsvR~vt~~~G~p~~---~v~ERL~~lDde~~~~-sY~v 129 (201)
+.++ ++|++.+++++.|...-+.|-+.+..+++++--+.--.|-...+....|.. .+.-|...-++....+ ..++
T Consensus 52 ~~~~~~~s~e~~~~~l~D~~~r~~Wd~~~~e~~~ie~~d~~~~i~y~~~~~P~pvs~RDfV~~r~~~~~~~~~vi~~~sv 131 (222)
T cd08871 52 SAIFPDVPAETLYDVLHDPEYRKTWDSNMIESFDICQLNPNNDIGYYSAKCPKPLKNRDFVNLRSWLEFGGEYIIFNHSV 131 (222)
T ss_pred EEEeCCCCHHHHHHHHHChhhhhhhhhhhceeEEEEEcCCCCEEEEEEeECCCCCCCCeEEEEEEEEeCCCEEEEEeccc
Confidence 3444 799999999999987744454566677666442111233334443222221 2222322223322222 2222
Q ss_pred EecccC-------CCCeeEEEEEEeecCCCceEEEEEEEeeCCCCCCHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Q 038201 130 IGGDHR-------LNNYRSVTTLHASPCGTGTVVVESYVCDVPPGNTRE-ETCTFVDTIVRCNLQSLAQISENMA 196 (201)
Q Consensus 130 veg~~~-------~~~Y~ati~v~p~~~~~~T~v~Ws~~~d~p~g~~~e-~~~~~v~~i~~~~L~~La~~~e~~~ 196 (201)
.-...+ ...+.+-..+.|.+ +++|.+.|....|+ -|.-+. .+..++....-..|..|++.+++-.
T Consensus 132 ~~~~~P~~~g~VR~~~~~~g~~i~p~~-~~~t~vt~~~~~Dp-~G~IP~~lvN~~~~~~~~~~l~~l~k~~~~y~ 204 (222)
T cd08871 132 KHKKYPPRKGFVRAISLLTGYLIRPTG-PKGCTLTYVTQNDP-KGSLPKWVVNKATTKLAPKVMKKLHKAALKYP 204 (222)
T ss_pred cCCCCCCCCCeEEeEEEccEEEEEECC-CCCEEEEEEEecCC-CCCcCHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 211112 23455556777775 56799999988885 454444 4455555555567777777777653
No 54
>cd08869 START_RhoGAP C-terminal lipid-binding START domain of mammalian STARD8, -12, -13 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD8 (also known as deleted in liver cancer 3/DLC3, and Arhgap38), STARD12 (also known as DLC-1, Arhgap7, and p122-RhoGAP), and STARD13 (also known as DLC-2, Arhgap37, and SDCCAG13). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subfamily also have a RhoGAP domain. Some, including STARD12, -and -13, also have an N-terminal SAM (sterile alpha motif) domain; these have a SAM-RhoGAP-START domain organization. This subfamily is involved in cancer development. A large spectrum of cancers have dysregul
Probab=93.86 E-value=3.2 Score=34.29 Aligned_cols=137 Identities=15% Similarity=0.012 Sum_probs=76.5
Q ss_pred EEEEEEEcCChHHHHHHHhCCCCCccccccceEEEEecC-CCCCCeEEEEEEecCCCc---ceeEEEEeeecCCC--cEE
Q 038201 52 SYAVQTINAPLPAVWSVVRRFDNPQAYKHFLKSCHVING-DGHVGTLREVHVISGLPA---ANSTERLEILDDEH--HVL 125 (201)
Q Consensus 52 s~v~~~I~ApadkVW~vv~dF~~pk~~p~~V~s~e~~eG-dg~vGsvR~vt~~~G~p~---~~v~ERL~~lDde~--~~~ 125 (201)
--++.+|+|++++|++++.+.. ++ |-+.+.++++++- |.. =.|-...+..-.|. ..+.-|....|.++ ..+
T Consensus 46 ~K~~~~v~a~~~~v~~~l~d~r-~~-Wd~~~~~~~vie~id~~-~~i~y~~~~~p~pv~~RDfV~~r~~~~~~~~g~~~i 122 (197)
T cd08869 46 WRASTEVEAPPEEVLQRILRER-HL-WDDDLLQWKVVETLDED-TEVYQYVTNSMAPHPTRDYVVLRTWRTDLPKGACVL 122 (197)
T ss_pred EEEEEEeCCCHHHHHHHHHHHH-hc-cchhhheEEEEEEecCC-cEEEEEEeeCCCCCCCceEEEEEEEEecCCCCcEEE
Confidence 3557889999999999887642 55 5567777777654 311 12222222222222 13333333333333 333
Q ss_pred EEEEEec--ccC-----CCCeeEEEEEEeecCCCceEEEEEEEeeCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 038201 126 SFSVIGG--DHR-----LNNYRSVTTLHASPCGTGTVVVESYVCDVPPGNTREETCTFVDTIVRCNLQSLAQISE 193 (201)
Q Consensus 126 sY~vveg--~~~-----~~~Y~ati~v~p~~~~~~T~v~Ws~~~d~p~g~~~e~~~~~v~~i~~~~L~~La~~~e 193 (201)
.+.=++- ..+ ...+.+-..+.|.+ +++|.+++-...| |-|.-+.-.......+.-..|++|++.+.
T Consensus 123 ~~~Sv~~~~~~p~g~VR~~~~~~g~~i~p~~-~~~t~vty~~~~D-p~G~iP~wl~N~~~~~~~~~~~~l~~~~~ 195 (197)
T cd08869 123 VETSVEHTEPVPLGGVRAVVLASRYLIEPCG-SGKSRVTHICRVD-LRGRSPEWYNKVYGHLCARELLRIRDSFR 195 (197)
T ss_pred EEECCcCCCCCCCCCEEEEEEeeeEEEEECC-CCCeEEEEEEEEC-CCCCCCceeecchHhHHHHHHHHHHhhcc
Confidence 3333321 122 23344455677874 4689999998989 45666554455555666677788877653
No 55
>cd08906 START_STARD3-like Cholesterol-binding START domain of mammalian STARD3 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD3 (also known as metastatic lymph node 64/MLN64) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD3 has a high affinity for cholesterol. It may function in trafficking endosomal cholesterol to a cytosolic acceptor or membrane. In addition to having a cytoplasmic START cholesterol-binding domain, STARD3 also contains an N-terminal MENTAL cholesterol-binding and protein-protein interaction domain. The MENTAL domain contains transmembrane helices and anchors MLN64 to endosome membranes. The gene encoding STARD3 is overexpressed in about 25% of breast cancers.
Probab=93.70 E-value=3.7 Score=34.43 Aligned_cols=157 Identities=12% Similarity=0.014 Sum_probs=85.4
Q ss_pred cccccccCCCCCCceeEEEEEEEcCChHHHH-HHHhCCCC-CccccccceEEEEecC-CCCCCeEEEEEEe-cCCCcc--
Q 038201 36 TLPFYHKHTVGPNQCCSYAVQTINAPLPAVW-SVVRRFDN-PQAYKHFLKSCHVING-DGHVGTLREVHVI-SGLPAA-- 109 (201)
Q Consensus 36 ~~~~~~~~~~~~~~~~s~v~~~I~ApadkVW-~vv~dF~~-pk~~p~~V~s~e~~eG-dg~vGsvR~vt~~-~G~p~~-- 109 (201)
-+.-|-.+.++.+++. -++.+|++|+++++ +++.|... ++|- +.+.++++++- +..-=-++.++.. .++|..
T Consensus 36 gi~V~s~~~~~~~~~f-k~~~~v~~~~~~l~~~ll~D~~~~~~W~-~~~~~~~vi~~~~~~~~i~Y~v~~p~~~~pv~~R 113 (209)
T cd08906 36 GDTVYTLEVPFHGKTF-ILKAFMQCPAELVYQEVILQPEKMVLWN-KTVSACQVLQRVDDNTLVSYDVAAGAAGGVVSPR 113 (209)
T ss_pred CCEEEEeccCCCCcEE-EEEEEEcCCHHHHHHHHHhChhhccccC-ccchhhhheeeccCCcEEEEEEccccccCCCCCC
Confidence 3444444555555665 67899999999998 68999999 6754 67888887643 2111111222221 122322
Q ss_pred -eeEEEEeeecCCCcE-EEEEEEecccC-CCCee------EEEEEEee-cCCCceEEEEEEEeeCCCCCCHHHHHHHHHH
Q 038201 110 -NSTERLEILDDEHHV-LSFSVIGGDHR-LNNYR------SVTTLHAS-PCGTGTVVVESYVCDVPPGNTREETCTFVDT 179 (201)
Q Consensus 110 -~v~ERL~~lDde~~~-~sY~vveg~~~-~~~Y~------ati~v~p~-~~~~~T~v~Ws~~~d~p~g~~~e~~~~~v~~ 179 (201)
.+.-|-..-+.++.. +..++.-...| .++|. +-.-+.|. .+.++|.++|-...|+-.....-.+..++-.
T Consensus 114 DfV~~r~~~~~~~~~i~~~~sv~~~~~P~~~~~VR~~~~~~G~~i~~~~~~~~~t~vt~~~~~Dp~G~lP~~lvN~~~~~ 193 (209)
T cd08906 114 DFVNVRRIERRRDRYVSAGISTTHSHKPPLSKYVRGENGPGGFVVLKSASNPSVCTFIWILNTDLKGRLPRYLIHQSLAA 193 (209)
T ss_pred ceEEEEEEEecCCcEEEEEEEEecCCCCCCCCeEEEeeeccEEEEEECCCCCCceEEEEEEecCCCCCCCHHHHHHHHHH
Confidence 333333333444422 33333333222 23332 22345553 3346799999999995443444455555555
Q ss_pred HHHHHHHHHHHHHHH
Q 038201 180 IVRCNLQSLAQISEN 194 (201)
Q Consensus 180 i~~~~L~~La~~~e~ 194 (201)
.--.-|..|++.++.
T Consensus 194 ~~~~~~~~LR~~~~~ 208 (209)
T cd08906 194 TMFEFASHLRQRIRD 208 (209)
T ss_pred HHHHHHHHHHHHHhh
Confidence 555566777776654
No 56
>cd08911 START_STARD7-like Lipid-binding START domain of mammalian STARD7 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD7 (also known as gestational trophoblastic tumor 1/GTT1). It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. The gene encoding STARD7 is overexpressed in choriocarcinoma. STARD7 appears to be involved in the intracellular trafficking of phosphatidycholine (PtdCho) to mitochondria. STARD7 was shown to be surface active and to interact differentially with phospholipid monolayers, it showed a preference for phosphatidylserine, cholesterol, and phosphatidylglycerol.
Probab=93.33 E-value=4.1 Score=33.90 Aligned_cols=134 Identities=16% Similarity=0.097 Sum_probs=75.2
Q ss_pred EEcCChHHHHHHHhCCCC-CccccccceEEEEecCCCCCC-eEEEEEEecCCCc---ceeEEEEeeecCCCcEE---EEE
Q 038201 57 TINAPLPAVWSVVRRFDN-PQAYKHFLKSCHVINGDGHVG-TLREVHVISGLPA---ANSTERLEILDDEHHVL---SFS 128 (201)
Q Consensus 57 ~I~ApadkVW~vv~dF~~-pk~~p~~V~s~e~~eGdg~vG-svR~vt~~~G~p~---~~v~ERL~~lDde~~~~---sY~ 128 (201)
..++|++.+.+++.|-+. ++|. +.+.++++++-+...+ -+-.+.+..--|. ..+--|-...|+++..+ .++
T Consensus 53 ~~d~s~~~~~~~~~D~~~r~~Wd-~~~~~~~~le~~~~~~~~i~y~~~~~P~P~s~RD~V~~r~~~~~~~~~~~~i~~~s 131 (207)
T cd08911 53 FDDVTARDFLNVQLDLEYRKKWD-ATAVELEVVDEDPETGSEIIYWEMQWPKPFANRDYVYVRRYIIDEENKLIVIVSKA 131 (207)
T ss_pred EcCCCHHHHHHHHhCHHHHHHHH-hhheeEEEEEccCCCCCEEEEEEEECCCCCCCccEEEEEEEEEcCCCCEEEEEEec
Confidence 449999999999999988 7755 5667777776432212 2223333322222 24444444566655432 223
Q ss_pred EEe-------cccCCCCeeEEEEEEeec--CCCceEEEEEEEeeCCCCCCHHH-HHHHHHHHHHHHHHHHHHHH
Q 038201 129 VIG-------GDHRLNNYRSVTTLHASP--CGTGTVVVESYVCDVPPGNTREE-TCTFVDTIVRCNLQSLAQIS 192 (201)
Q Consensus 129 vve-------g~~~~~~Y~ati~v~p~~--~~~~T~v~Ws~~~d~p~g~~~e~-~~~~v~~i~~~~L~~La~~~ 192 (201)
+-. |-.++..|.+...+.|.. +++++.+.+.+..| |.|.-+.. +..++....-.-|..|++.+
T Consensus 132 v~hp~~P~~~g~VRv~~~~~~~~i~p~~~~~~~~~~~~~~~~~d-PgG~IP~~lvN~~~~~~~~~~l~~l~~a~ 204 (207)
T cd08911 132 VQHPSYPESPKKVRVEDYWSYMVIRPHKSFDEPGFEFVLTYFDN-PGVNIPSYITSWVAMSGMPDFLERLRNAA 204 (207)
T ss_pred CCCCCCCCCCCCEEEEEeEEEEEEEeCCCCCCCCeEEEEEEEeC-CCCccCHHHHHHHHHhhccHHHHHHHHHH
Confidence 332 112356778888888874 24578888776666 56655543 33333434444455555544
No 57
>cd08873 START_STARD14_15-like Lipid-binding START domain of mammalian STARDT14, -15, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian brown fat-inducible STARD14 (also known as Acyl-Coenzyme A Thioesterase 11 or ACOT11, BFIT, THEA, THEM1, KIAA0707, and MGC25974), STARD15/ACOT12 (also known as cytoplasmic acetyl-CoA hydrolase/CACH, THEAL, and MGC105114), and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD14/ACOT11 and STARD15/ACOT12 are type II acetyl-CoA thioesterases; they catalyze the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Human STARD14 displays acetyl-CoA thioesterase activity towards medium(C12)- and long(C16)-chain fatty acyl-CoA substrates. Rat CACH hydrolyzes acetyl-CoA to acetate an
Probab=92.72 E-value=3 Score=36.01 Aligned_cols=133 Identities=13% Similarity=0.025 Sum_probs=75.5
Q ss_pred EEEEEEEcCChHHHHHHHhCCCC-CccccccceEEEEecC-CCCCCeEEEEEEecCCCc---ceeEEEEee--ecCCC-c
Q 038201 52 SYAVQTINAPLPAVWSVVRRFDN-PQAYKHFLKSCHVING-DGHVGTLREVHVISGLPA---ANSTERLEI--LDDEH-H 123 (201)
Q Consensus 52 s~v~~~I~ApadkVW~vv~dF~~-pk~~p~~V~s~e~~eG-dg~vGsvR~vt~~~G~p~---~~v~ERL~~--lDde~-~ 123 (201)
--++..+++|++++++++.|... ++|. +...++++++- +...+ +-.+.+..--|. ..+.-+-.. .|+.+ .
T Consensus 79 fk~e~~vd~s~~~v~dlL~D~~~R~~WD-~~~~e~evI~~id~d~~-iyy~~~p~PwPvk~RDfV~~~s~~~~~~~~~~~ 156 (235)
T cd08873 79 FCVELKVQTCASDAFDLLSDPFKRPEWD-PHGRSCEEVKRVGEDDG-IYHTTMPSLTSEKPNDFVLLVSRRKPATDGDPY 156 (235)
T ss_pred EEEEEEecCCHHHHHHHHhCcchhhhhh-hcccEEEEEEEeCCCcE-EEEEEcCCCCCCCCceEEEEEEEEeccCCCCeE
Confidence 34567899999999999999999 7755 57888888763 21233 233333321111 122222221 23322 2
Q ss_pred EEEEEEEe-ccc-------CCCCeeEEEEEEeecCCCceEEEEEEEeeCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038201 124 VLSFSVIG-GDH-------RLNNYRSVTTLHASPCGTGTVVVESYVCDVPPGNTREETCTFVDTIVRCNLQSLAQISENM 195 (201)
Q Consensus 124 ~~sY~vve-g~~-------~~~~Y~ati~v~p~~~~~~T~v~Ws~~~d~p~g~~~e~~~~~v~~i~~~~L~~La~~~e~~ 195 (201)
.+...-+. ... +...+.+...+.|.+ +++|.|+.....|| |. -.++.++|.+|-+.++..
T Consensus 157 ~I~~~SV~h~~~Pp~kgyVR~~~~~ggW~I~p~~-~~~t~VtY~~~~dP--g~---------~~~~~~~~~~~~~~~~~~ 224 (235)
T cd08873 157 KVAFRSVTLPRVPQTPGYSRTEVACAGFVIRQDC-GTCTEVSYYNETNP--KL---------LSYVTCNLAGLSALYCRT 224 (235)
T ss_pred EEEEeeeecccCCCCCCeEEEEEEeeeEEEEECC-CCcEEEEEEEEcCC--Cc---------cceeeecchhhhHHHHHH
Confidence 33333333 111 234555666788875 46789988877664 31 235566777777777666
Q ss_pred Hhh
Q 038201 196 AAR 198 (201)
Q Consensus 196 ~~~ 198 (201)
+..
T Consensus 225 ~~~ 227 (235)
T cd08873 225 FHC 227 (235)
T ss_pred HHH
Confidence 543
No 58
>cd08874 START_STARD9-like C-terminal START domain of mammalian STARD9, and related domains; lipid binding. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD9 (also known as KIAA1300), and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C /PITP /Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Some members of this subfamily have N-terminal kinesin motor domains. STARD9 interacts with supervillin, a protein important for efficient cytokinesis, perhaps playing a role in coordinating microtubule motors with actin and myosin II functions at membranes. The human gene encoding STARD9 lies within a target region for LGMD2A, an autosomal recessive form of limb-girdle muscular dystrophy.
Probab=92.06 E-value=6.6 Score=33.04 Aligned_cols=116 Identities=15% Similarity=0.064 Sum_probs=63.2
Q ss_pred EEEEcCChHHHHHHHhCCCC-CccccccceEEEEecCCC-CCCeEEEEEEecCCCc-----ceeEEEEeeecCCCcEEEE
Q 038201 55 VQTINAPLPAVWSVVRRFDN-PQAYKHFLKSCHVINGDG-HVGTLREVHVISGLPA-----ANSTERLEILDDEHHVLSF 127 (201)
Q Consensus 55 ~~~I~ApadkVW~vv~dF~~-pk~~p~~V~s~e~~eGdg-~vGsvR~vt~~~G~p~-----~~v~ERL~~lDde~~~~sY 127 (201)
+.+|++|+++||+++.|... ++|. +.++++++++--+ .. .+-.+.+..-.|. ..+.-+-...+++...+..
T Consensus 50 e~~v~as~~~v~~ll~D~~~r~~Wd-~~~~~~~vl~~~~~d~-~i~y~~~~~Pwp~~~~~RDfV~l~~~~~~~~~~vi~~ 127 (205)
T cd08874 50 AGVIKAPLATVWKAVKDPRTRFLYD-TMIKTARIHKTFTEDI-CLVYLVHETPLCLLKQPRDFCCLQVEAKEGELSVVAC 127 (205)
T ss_pred EEEEcCCHHHHHHHHhCcchhhhhH-HhhhheeeeeecCCCe-EEEEEEecCCCCCCCCCCeEEEEEEEEECCCcEEEEE
Confidence 56889999999999999999 7755 5899999976522 22 2333333211111 1222222222333333322
Q ss_pred EEEec-ccC-C-------CCeeEEEEEEeec-C-CCceEEEEEEEeeCCCCCCHHH
Q 038201 128 SVIGG-DHR-L-------NNYRSVTTLHASP-C-GTGTVVVESYVCDVPPGNTREE 172 (201)
Q Consensus 128 ~vveg-~~~-~-------~~Y~ati~v~p~~-~-~~~T~v~Ws~~~d~p~g~~~e~ 172 (201)
.-+.- ..| . .++.+...+.|.. + +++|.++.....|+-.|.-+..
T Consensus 128 ~SV~~~~~P~~~~~~VR~~~~~~gw~i~P~~~~g~~~t~vty~~q~DPggg~iP~~ 183 (205)
T cd08874 128 QSVYDKSMPEPGRSLVRGEILPSAWILEPVTVEGNQYTRVIYIAQVALCGPDVPAQ 183 (205)
T ss_pred EecccccCCCCCCCeEEeeeEeeeEEEEECccCCCCcEEEEEEEEECCCCCCCCHH
Confidence 22222 222 2 2333445677751 1 3579999998888652444443
No 59
>smart00234 START in StAR and phosphatidylcholine transfer protein. putative lipid-binding domain in StAR and phosphatidylcholine transfer protein
Probab=90.73 E-value=7.8 Score=31.39 Aligned_cols=143 Identities=9% Similarity=-0.047 Sum_probs=76.5
Q ss_pred eeEEEEEEEcCChHH-HHHHHhCCCCCccccccceEEEEecCCCCCCeEEEEEEecCC-Ccc----eeEEEEeeecCCCc
Q 038201 50 CCSYAVQTINAPLPA-VWSVVRRFDNPQAYKHFLKSCHVINGDGHVGTLREVHVISGL-PAA----NSTERLEILDDEHH 123 (201)
Q Consensus 50 ~~s~v~~~I~Apadk-VW~vv~dF~~pk~~p~~V~s~e~~eGdg~vGsvR~vt~~~G~-p~~----~v~ERL~~lDde~~ 123 (201)
...-.+..|.+++++ +=.++.|...-+.|-+.+.++++++-...-..|..+....-. |.. .+.-+....++...
T Consensus 45 ~~~k~~~~v~~~~~~~~~~~~~d~~~r~~Wd~~~~~~~~ie~~~~~~~i~~~~~~~~~~p~~~RDfv~~r~~~~~~~~~~ 124 (206)
T smart00234 45 EASRAVGVVPMVCADLVEELMDDLRYRPEWDKNVAKAETLEVIDNGTVIYHYVSKFVAGPVSPRDFVFVRYWRELVDGSY 124 (206)
T ss_pred EEEEEEEEEecChHHHHHHHHhcccchhhCchhcccEEEEEEECCCCeEEEEEEecccCcCCCCeEEEEEEEEEcCCCcE
Confidence 344456788888887 446778888733365677788876542111355555444332 332 22222222233333
Q ss_pred EEEEEEEeccc--------CCCCeeEEEEEEeecCCCceEEEEEEEeeCCCCCC-HHHHHHHHHHHHHHHHHHHHHHHHH
Q 038201 124 VLSFSVIGGDH--------RLNNYRSVTTLHASPCGTGTVVVESYVCDVPPGNT-REETCTFVDTIVRCNLQSLAQISEN 194 (201)
Q Consensus 124 ~~sY~vveg~~--------~~~~Y~ati~v~p~~~~~~T~v~Ws~~~d~p~g~~-~e~~~~~v~~i~~~~L~~La~~~e~ 194 (201)
.+...-++.+. +...+.+...+.|.+ ++.|.++|-...|+ .|.. .-.+..++....-..+..|.+.+++
T Consensus 125 vi~~~Sv~~~~~p~~~~~VR~~~~~~~~~i~p~~-~~~t~vt~~~~~D~-~G~iP~~lvn~~~~~~~~~~~~~~~~~~~~ 202 (206)
T smart00234 125 AVVDVSVTHPTSPPTSGYVRAENLPSGLLIEPLG-NGPSKVTWVSHADL-KGWLPHWLVRSLIKSGLAEFAKTWVATLQK 202 (206)
T ss_pred EEEEEECCCCCCCCCCCceEEEEeceEEEEEECC-CCCeEEEEEEEEec-CCCccceeehhhhhhhHHHHHHHHHHHHHH
Confidence 44443333221 234566667788875 45699999988885 4433 3344444444444445555555444
No 60
>cd08870 START_STARD2_7-like Lipid-binding START domain of mammalian STARD2, -7, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD2 (also known as phosphatidylcholine transfer protein/PC-TP), and STARD7 (also known as gestational trophoblastic tumor 1/GTT1). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD2 is a cytosolic phosphatidycholine (PtdCho) transfer protein, which traffics PtdCho, the most common class of phospholipids in eukaryotes, between membranes. It represents a minimal START domain structure. STARD2 plays roles in hepatic cholesterol metabolism, in the development of atherosclerosis, and may also have a mitochondrial function. The gene encoding STARD7 is overexpressed in choriocarcinoma. STARD7 appears to be invo
Probab=90.56 E-value=8.9 Score=31.80 Aligned_cols=136 Identities=13% Similarity=0.079 Sum_probs=71.7
Q ss_pred EEEEE-cCChHHHHHHHhCCCC-CccccccceEEEEecCCCCCCeEEEEEEecCCC--c---ceeEEEEeeec-CCCcEE
Q 038201 54 AVQTI-NAPLPAVWSVVRRFDN-PQAYKHFLKSCHVINGDGHVGTLREVHVISGLP--A---ANSTERLEILD-DEHHVL 125 (201)
Q Consensus 54 v~~~I-~ApadkVW~vv~dF~~-pk~~p~~V~s~e~~eGdg~vGsvR~vt~~~G~p--~---~~v~ERL~~lD-de~~~~ 125 (201)
++.++ ++|++.+.+++.|-+. ++|. ..+.++++++-++.-| .+.+.+.-..| . ..+--|-...| +....+
T Consensus 54 ~~~~~~~~s~~~~~~~l~D~~~r~~Wd-~~~~~~~~le~~~~~~-~~i~y~~~~~P~P~s~RD~V~~r~~~~~~~~~~~i 131 (209)
T cd08870 54 VRGVFEDCTPELLRDFYWDDEYRKKWD-ETVIEHETLEEDEKSG-TEIVRWVKKFPFPLSDREYVIARRLWESDDRSYVC 131 (209)
T ss_pred EEEEEcCCCHHHHHHHHcChhhHhhhh-hheeeEEEEEecCCCC-cEEEEEEEECCCcCCCceEEEEEEEEEcCCCEEEE
Confidence 34556 7799999999999888 7755 4556666654442212 22233222222 2 12322322233 333333
Q ss_pred EEEEEec-------ccCCCCeeEEEEEEeec-CCCceEEEEEEEeeCCCCCCHH-HHHHHHHHHHHHHHHHHHHHH
Q 038201 126 SFSVIGG-------DHRLNNYRSVTTLHASP-CGTGTVVVESYVCDVPPGNTRE-ETCTFVDTIVRCNLQSLAQIS 192 (201)
Q Consensus 126 sY~vveg-------~~~~~~Y~ati~v~p~~-~~~~T~v~Ws~~~d~p~g~~~e-~~~~~v~~i~~~~L~~La~~~ 192 (201)
....+.- -.++..|.+...+.|.. ++++|.+...+..|+ .|.-+. .+..++....-.-|+.|++.+
T Consensus 132 ~~~sv~~~~~P~~~~vRv~~~~~~~~i~p~~~~~~~t~~~~~~~~dp-~G~IP~wlvN~~~~~~~~~~l~~l~~a~ 206 (209)
T cd08870 132 VTKGVPYPSVPRSGRKRVDDYESSLVIRAVKGDGQGSACEVTYFHNP-DGGIPRELAKLAVKRGMPGFLKKLENAL 206 (209)
T ss_pred EEeCCcCCCCCCCCcEEEEEEEeEEEEEEecCCCCceEEEEEEEECC-CCCCCHHHHHHHHHhhhHHHHHHHHHHH
Confidence 3333322 22356778888888873 246788999888884 554444 433333333333444444443
No 61
>cd08867 START_STARD4_5_6-like Lipid-binding START domain of mammalian STARD4, -5, -6, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD4, -5, and -6. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD4 plays an important role in steroidogenesis, trafficking cholesterol into mitochondria. It specifically binds cholesterol, and demonstrates limited binding to another sterol, 7a-hydroxycholesterol. STARD4 and STARD5 are ubiquitously expressed, with highest levels in liver and kidney. STRAD5 functions in the kidney within the proximal tubule cells where it is associated with the Endoplasmic Reticulum (ER), and may participate in ER-associated cholesterol transport. It binds cholesterol and 25-hydroxycholesterol. Expression
Probab=87.90 E-value=14 Score=30.43 Aligned_cols=116 Identities=12% Similarity=-0.031 Sum_probs=61.7
Q ss_pred EEEEEEEcCChHHHHHHHhC--CCC-CccccccceEEEEecCCCCCCeEEEEEEecC----CCcc----eeEEEEeeecC
Q 038201 52 SYAVQTINAPLPAVWSVVRR--FDN-PQAYKHFLKSCHVINGDGHVGTLREVHVISG----LPAA----NSTERLEILDD 120 (201)
Q Consensus 52 s~v~~~I~ApadkVW~vv~d--F~~-pk~~p~~V~s~e~~eGdg~vGsvR~vt~~~G----~p~~----~v~ERL~~lDd 120 (201)
--.+..|++++++|.+++.+ ... .+ |-+.+.++++++.-+ .....+.+... +... ...+....+++
T Consensus 48 ~k~~~~i~~~~~~v~~~l~d~~~~~r~~-Wd~~~~~~~~le~id--~~~~i~~~~~p~~~~~~vs~RDfV~~~~~~~~~~ 124 (206)
T cd08867 48 YRAEGIVDALPEKVIDVIIPPCGGLRLK-WDKSLKHYEVLEKIS--EDLCVGRTITPSAAMGLISPRDFVDLVYVKRYED 124 (206)
T ss_pred EEEEEEEcCCHHHHHHHHHhcCcccccc-ccccccceEEEEEeC--CCeEEEEEEccccccCccCCcceEEEEEEEEeCC
Confidence 45678899999999999988 555 55 446788888876632 11222222211 1111 11222222333
Q ss_pred CCcEEEEEEEeccc--CCCCe------eEEEEEEeecC-CCceEEEEEEEeeCCCCCCHH
Q 038201 121 EHHVLSFSVIGGDH--RLNNY------RSVTTLHASPC-GTGTVVVESYVCDVPPGNTRE 171 (201)
Q Consensus 121 e~~~~sY~vveg~~--~~~~Y------~ati~v~p~~~-~~~T~v~Ws~~~d~p~g~~~e 171 (201)
....+...-++-+. +.++| .+-.-+.|..+ .++|.++|-...|+. |.-+.
T Consensus 125 ~~~~i~~~Sv~hp~~p~~~~~VR~~~~~~g~~i~p~~~~~~~t~~~~~~~~Dpk-G~iP~ 183 (206)
T cd08867 125 NQWSSSGKSVDIPERPPTPGFVRGYNHPCGYFCSPLKGSPDKSFLVLYVQTDLR-GMIPQ 183 (206)
T ss_pred CeEEEEEEeccCCCCCCCCCcEEEEeecCEEEEEECCCCCCceEEEEEEEeccC-CCCcH
Confidence 32333333332221 22333 23334666542 367999999999954 54443
No 62
>cd08908 START_STARD12-like C-terminal lipid-binding START domain of mammalian STARD12 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD12 (also known as DLC-1, Arhgap7, and p122-RhoGAP) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subgroup also have an N-terminal SAM (sterile alpha motif) domain and a RhoGAP domain, and have a SAM-RhoGAP-START domain organization. The precise function of the START domain in this subgroup is unclear.
Probab=82.65 E-value=28 Score=29.31 Aligned_cols=135 Identities=9% Similarity=-0.048 Sum_probs=77.3
Q ss_pred EEEEEEEcCChHHHHHHHhCCCCCccccccceEEEEecC-CCCCCeEEEEEEecC----CCc-ceeEEEEeeecCCCcEE
Q 038201 52 SYAVQTINAPLPAVWSVVRRFDNPQAYKHFLKSCHVING-DGHVGTLREVHVISG----LPA-ANSTERLEILDDEHHVL 125 (201)
Q Consensus 52 s~v~~~I~ApadkVW~vv~dF~~pk~~p~~V~s~e~~eG-dg~vGsvR~vt~~~G----~p~-~~v~ERL~~lDde~~~~ 125 (201)
--.+.+|+|++++|..++-|- ..+|. +.+.++++++- |. ....+.+.-. .+. ..+.-|.-..|..+..+
T Consensus 54 ~r~~~~i~a~~~~vl~~lld~-~~~Wd-~~~~e~~vIe~ld~---~~~I~Yy~~~~PwP~~~RD~V~~Rs~~~~~~~g~~ 128 (204)
T cd08908 54 WRTTIEVPAAPEEILKRLLKE-QHLWD-VDLLDSKVIEILDS---QTEIYQYVQNSMAPHPARDYVVLRTWRTNLPKGAC 128 (204)
T ss_pred EEEEEEeCCCHHHHHHHHHhh-HHHHH-HHhhheEeeEecCC---CceEEEEEccCCCCCCCcEEEEEEEEEEeCCCCeE
Confidence 344688999999999998766 45544 45555555543 32 1222333211 121 13333344344444443
Q ss_pred EEEEE---ecccCCCCeeE-----EEEEEeecCCCceEEEEEEEeeCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 038201 126 SFSVI---GGDHRLNNYRS-----VTTLHASPCGTGTVVVESYVCDVPPGNTREETCTFVDTIVRCNLQSLAQISE 193 (201)
Q Consensus 126 sY~vv---eg~~~~~~Y~a-----ti~v~p~~~~~~T~v~Ws~~~d~p~g~~~e~~~~~v~~i~~~~L~~La~~~e 193 (201)
..... -...|....++ ...+.|.+ +++|.++.-...| |-|..+.-.......+....|..|++.+.
T Consensus 129 ~I~~~Sv~h~~~P~~~VR~~~~~~~w~i~P~g-~g~t~vtyi~~~D-PgG~iP~W~~N~~g~~~~~~~~~~r~sf~ 202 (204)
T cd08908 129 ALLATSVDHDRAPVAGVRVNVLLSRYLIEPCG-SGKSKLTYMCRID-LRGHMPEWYTKSFGHLCAAEVVKIRDSFS 202 (204)
T ss_pred EEEEeecCcccCCcCceEEEEEeeEEEEEECC-CCcEEEEEEEEeC-CCCCCcHHHHhhHHHHHHHHHHHHHhhcc
Confidence 32222 22234343333 33567764 4689999988888 56777777666677777888888887764
No 63
>cd08914 START_STARD15-like Lipid-binding START domain of mammalian STARD15 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD15/ACOT12 (also known as cytoplasmic acetyl-CoA hydrolase/CACH, THEAL, and MGC105114) and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD15/ACOT12 is a type II acetyl-CoA thioesterase; it catalyzes the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Rat CACH hydrolyzes acetyl-CoA to acetate and CoA. In addition to having a START domain, most proteins in this subgroup have two tandem copies of the hotdog domain. Human STARD15/ACOT12 may have roles in cholesterol metabolism and in beta-oxidation.
Probab=79.83 E-value=39 Score=29.21 Aligned_cols=112 Identities=16% Similarity=0.122 Sum_probs=60.6
Q ss_pred eeEEEEEEEcCChHHHHHHHhCCCC-CccccccceEEEEecC-CCCCCeEEEEEEec--CCCcc-eeE--EEEeeecCCC
Q 038201 50 CCSYAVQTINAPLPAVWSVVRRFDN-PQAYKHFLKSCHVING-DGHVGTLREVHVIS--GLPAA-NST--ERLEILDDEH 122 (201)
Q Consensus 50 ~~s~v~~~I~ApadkVW~vv~dF~~-pk~~p~~V~s~e~~eG-dg~vGsvR~vt~~~--G~p~~-~v~--ERL~~lDde~ 122 (201)
..--++..+++|++++.+++.|... ++|. +...++++++- |..-- |..+.-.. ....- .+. -+....++.+
T Consensus 78 l~fk~e~~vdvs~~~l~~LL~D~~~r~~Wd-~~~~e~~vI~qld~~~~-vY~~~~pPw~Pvk~RD~V~~~s~~~~~~dg~ 155 (236)
T cd08914 78 LSVWVEKHVKRPAHLAYRLLSDFTKRPLWD-PHFLSCEVIDWVSEDDQ-IYHITCPIVNNDKPKDLVVLVSRRKPLKDGN 155 (236)
T ss_pred EEEEEEEEEcCCHHHHHHHHhChhhhchhH-HhhceEEEEEEeCCCcC-EEEEecCCCCCCCCceEEEEEEEEecCCCCC
Confidence 3455567899999999999999999 7755 56777877654 22122 55554222 11111 111 1111121222
Q ss_pred -cEE-EEEEEecccC-CCCee------EEEEEEeecCCCceEEEEEEEeeC
Q 038201 123 -HVL-SFSVIGGDHR-LNNYR------SVTTLHASPCGTGTVVVESYVCDV 164 (201)
Q Consensus 123 -~~~-sY~vveg~~~-~~~Y~------ati~v~p~~~~~~T~v~Ws~~~d~ 164 (201)
..+ ..++...-+| -++|. +-..+.|.+ +++|.|+.....||
T Consensus 156 ~~~I~~~SVp~~~~Pp~kg~VRv~~~~~G~~I~pl~-~~~~~VtY~~~~dP 205 (236)
T cd08914 156 TYVVAVKSVILPSVPPSPQYIRSEIICAGFLIHAID-SNSCTVSYFNQISA 205 (236)
T ss_pred EEEEEEeecccccCCCCCCcEEeEEEEEEEEEEEcC-CCcEEEEEEEEcCC
Confidence 222 3344432222 23332 222677764 56889988877774
No 64
>cd08904 START_STARD6-like Lipid-binding START domain of mammalian STARD6 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD6 and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD6 is expressed in male germ cells of normal rats, and in the steroidogenic Leydig cells of perinatal hypothyroid testes. It may play a pivotal role in the steroidogenesis as well as in the spermatogenesis of normal rats. STARD6 has also been detected in the rat nervous system, and may participate in neurosteroid synthesis.
Probab=76.08 E-value=46 Score=27.94 Aligned_cols=139 Identities=7% Similarity=-0.067 Sum_probs=72.3
Q ss_pred eeEEEEEEEcCChHHHHHHHhCCCCCccccccceEEEEecC-CCCCCeEEEEEEec-CCC-c---ceeEEEEe-eecCCC
Q 038201 50 CCSYAVQTINAPLPAVWSVVRRFDNPQAYKHFLKSCHVING-DGHVGTLREVHVIS-GLP-A---ANSTERLE-ILDDEH 122 (201)
Q Consensus 50 ~~s~v~~~I~ApadkVW~vv~dF~~pk~~p~~V~s~e~~eG-dg~vGsvR~vt~~~-G~p-~---~~v~ERL~-~lDde~ 122 (201)
.---++.+|+++++++|+.+.+-..-.-|-+.+.++++++- |.. -.|-+....+ +.+ . ..+--|.- .+++..
T Consensus 46 kl~k~egvi~~~~e~v~~~l~~~e~r~~Wd~~~~~~~iie~Id~~-T~I~~~~~~~~~~~~vspRDfV~vr~~~r~~~~~ 124 (204)
T cd08904 46 NLYRVEGIIPESPAKLIQFMYQPEHRIKWDKSLQVYKMLQRIDSD-TFICHTITQSFAMGSISPRDFVDLVHIKRYEGNM 124 (204)
T ss_pred eEEEEEEEecCCHHHHHHHHhccchhhhhcccccceeeEEEeCCC-cEEEEEecccccCCcccCceEEEEEEEEEeCCCE
Confidence 44556789999999999998764443335558888888754 321 1222212221 111 1 12222221 234544
Q ss_pred cEEEEEEEeccc--CCC------CeeEEEEEEeecCC-CceEEEEEEEeeCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 038201 123 HVLSFSVIGGDH--RLN------NYRSVTTLHASPCG-TGTVVVESYVCDVPPGNTREETCTFVDTIVRCNLQSLA 189 (201)
Q Consensus 123 ~~~sY~vveg~~--~~~------~Y~ati~v~p~~~~-~~T~v~Ws~~~d~p~g~~~e~~~~~v~~i~~~~L~~La 189 (201)
..+.+.-++-+- +-+ ++.+-.-+.|..++ ++|.++|-+..|+......-....++.......+..|+
T Consensus 125 ~ii~~~sv~Hp~~Pp~~g~VRa~n~~~G~~i~pl~~~p~~t~l~~~~~~DlkG~lP~~vv~~~~~~~~~~f~~~~~ 200 (204)
T cd08904 125 NIVSSVSVEYPQCPPSSNYIRGYNHPCGYVCSPLPENPAYSKLVMFVQPELRGNLSRSVIEKTMPTNLVNLILDAK 200 (204)
T ss_pred EEEEEEecccCCCCCCCCcEEEeeeccEEEEEECCCCCCceEEEEEEEeCCCCCCCHHHHHHHhHHHHHHHHHHHH
Confidence 444455454332 223 33344567776543 46999999999965333344444444433333333333
No 65
>cd08913 START_STARD14-like Lipid-binding START domain of mammalian STARDT14 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian brown fat-inducible STARD14 (also known as Acyl-Coenzyme A Thioesterase 11 or ACOT11, BFIT, THEA, THEM1, KIAA0707, and MGC25974) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD14/ACOT11 is a type II acetyl-CoA thioesterase; it catalyzes the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Human STARD14 displays acetyl-CoA thioesterase activity towards medium(C12)- and long(C16)-chain fatty acyl-CoA substrates. In addition to having a START domain, most proteins in this subgroup have two tandem copies of the hotdog domain. There are two splice variants of
Probab=74.49 E-value=56 Score=28.19 Aligned_cols=37 Identities=8% Similarity=0.265 Sum_probs=30.8
Q ss_pred EEEEEEcCChHHHHHHHhCCCC-CccccccceEEEEecC
Q 038201 53 YAVQTINAPLPAVWSVVRRFDN-PQAYKHFLKSCHVING 90 (201)
Q Consensus 53 ~v~~~I~ApadkVW~vv~dF~~-pk~~p~~V~s~e~~eG 90 (201)
-++..+++|++++++++.|... ++|. +.+.+|++++-
T Consensus 84 K~e~~vd~s~e~v~~lL~D~~~r~~Wd-~~~~e~~vIe~ 121 (240)
T cd08913 84 KVEMVVHVDAAQAFLLLSDLRRRPEWD-KHYRSCELVQQ 121 (240)
T ss_pred EEEEEEcCCHHHHHHHHhChhhhhhhH-hhccEEEEEEe
Confidence 4567999999999999999999 7755 67888888754
No 66
>KOG2936 consensus Uncharacterized conserved protein [Function unknown]
Probab=70.41 E-value=28 Score=31.27 Aligned_cols=121 Identities=15% Similarity=0.114 Sum_probs=71.5
Q ss_pred CCCceeEEEEEEEcCChHHHHHHHhCCCCCccccccceEEEEecCCCCCCeEEEEEEecCCCcceeEEEEeeecCCCc-E
Q 038201 46 GPNQCCSYAVQTINAPLPAVWSVVRRFDNPQAYKHFLKSCHVINGDGHVGTLREVHVISGLPAANSTERLEILDDEHH-V 124 (201)
Q Consensus 46 ~~~~~~s~v~~~I~ApadkVW~vv~dF~~pk~~p~~V~s~e~~eGdg~vGsvR~vt~~~G~p~~~v~ERL~~lDde~~-~ 124 (201)
.-+.|.-.+...++++++.+.++|.+-...+.|.......+. +.| |.. .+-+| .++.| ++++-+.++ +
T Consensus 169 ~~~t~di~l~~tfn~~~~eLy~~fld~~rv~~wt~S~a~l~~--~~~--g~f---~lf~G---nVtg~-~~~~e~~K~Iv 237 (301)
T KOG2936|consen 169 VIPTADISLSATFNCRVDELYEIFLDPERVKAWTRSPAELEA--DPG--GKF---SLFDG---NVTGE-FLELEKNKKIV 237 (301)
T ss_pred ccccccceehhhcCCCHHHHHHHHhcHHHHHHhcCChhhccc--CCC--Cce---EEecc---cceee-eeeecCCCeEE
Confidence 345688888999999999999999988777767543333322 223 443 44456 34444 444433333 3
Q ss_pred EEEEEEecccCCCCeeEEEEEEeecCCCce--EEEEEEEeeCCCCCCHHHHHHHHHHHHHHH
Q 038201 125 LSFSVIGGDHRLNNYRSVTTLHASPCGTGT--VVVESYVCDVPPGNTREETCTFVDTIVRCN 184 (201)
Q Consensus 125 ~sY~vveg~~~~~~Y~ati~v~p~~~~~~T--~v~Ws~~~d~p~g~~~e~~~~~v~~i~~~~ 184 (201)
+.|++=.= | .+.-|+|++.+...++.| .+.|+.. |.+. +|.++.-.+..|-..
T Consensus 238 ~kWrl~~W--p-~~~~atI~~~f~~~~~~t~l~~~~kgV---P~~e-ee~~~~~wq~yyf~~ 292 (301)
T KOG2936|consen 238 MKWRLKSW--P-DGHDATITLTFYESQGETKLQVKQKGV---PIGE-EENTRQGWQEYYFEP 292 (301)
T ss_pred EEEecccC--C-CCccceEEEEEecCCCceEEEEEecCC---Ccch-hHHHHhhHHHHhhhH
Confidence 45655322 2 456778888877555556 3566644 6553 555555555555333
No 67
>cd08910 START_STARD2-like Lipid-binding START domain of mammalian STARD2 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD2 (also known as phosphatidylcholine transfer protein/PC-TP) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD2 is a cytosolic phosphatidycholine (PtdCho) transfer protein, which traffics PtdCho, the most common class of phospholipids in eukaryotes, between membranes. It represents a minimal START domain structure. STARD2 plays roles in hepatic cholesterol metabolism, in the development of atherosclerosis, and may have a mitochondrial function.
Probab=69.06 E-value=66 Score=26.71 Aligned_cols=151 Identities=14% Similarity=0.075 Sum_probs=77.2
Q ss_pred ccccccCCCCCCceeEEEEEEEc-CChHHHHHHHhCCCC-CccccccceEEEEecCCCCCCeEEEEEEecCCCcc---ee
Q 038201 37 LPFYHKHTVGPNQCCSYAVQTIN-APLPAVWSVVRRFDN-PQAYKHFLKSCHVINGDGHVGTLREVHVISGLPAA---NS 111 (201)
Q Consensus 37 ~~~~~~~~~~~~~~~s~v~~~I~-ApadkVW~vv~dF~~-pk~~p~~V~s~e~~eGdg~vGsvR~vt~~~G~p~~---~v 111 (201)
+.-+-...++.+-..--++.++. ++++.+.+++.|.+. ++|.+.+.+ +.-.+.++ -.+-.+.+..--|.. .+
T Consensus 36 i~Vy~r~~~~s~~~~~k~~~~~~~~s~~~~~~~l~D~~~r~~Wd~~~~~-~~~~~~~~--~~i~y~~~k~PwPvs~RD~V 112 (207)
T cd08910 36 ISIYRLLDEQSGLYEYKVFGVLEDCSPSLLADVYMDLEYRKQWDQYVKE-LYEKECDG--ETVIYWEVKYPFPLSNRDYV 112 (207)
T ss_pred eEEEEeccCCCCcEEEEEEEEEcCCCHHHHHHHHhCHHHHHHHHHHHHh-heeecCCC--CEEEEEEEEcCCCCCCceEE
Confidence 33333334444434444456776 799999999999888 776654444 32222232 123333333222221 22
Q ss_pred -EEEEeeecCCCcEEEE---EEEe--------cccCCCCeeEEEEEEeecCCCceEEEEEEEeeCCCCCCHHH-HHHHHH
Q 038201 112 -TERLEILDDEHHVLSF---SVIG--------GDHRLNNYRSVTTLHASPCGTGTVVVESYVCDVPPGNTREE-TCTFVD 178 (201)
Q Consensus 112 -~ERL~~lDde~~~~sY---~vve--------g~~~~~~Y~ati~v~p~~~~~~T~v~Ws~~~d~p~g~~~e~-~~~~v~ 178 (201)
.-+...+|.++..+.. ..++ |-.+...|.+...+.|.+ +++|.++..+..| |.|.-+.. +..+..
T Consensus 113 ~~r~~~~~~~~~~~~~iv~~~s~~~p~~P~~~~~VRv~~~~~~~~i~p~~-~~~t~i~~~~~~D-PgG~IP~wlvN~~~~ 190 (207)
T cd08910 113 YIRQRRDLDVEGRKIWVILARSTSLPQLPEKPGVIRVKQYKQSLAIESDG-KKGSKVFMYYFDN-PGGMIPSWLINWAAK 190 (207)
T ss_pred EEEEeccccCCCCeEEEEEecCCCCCCCCCCCCCEEEEEEEEEEEEEeCC-CCceEEEEEEEeC-CCCcchHHHHHHHHH
Confidence 2222344544432111 1121 112356777777888764 4679999988888 46655553 333333
Q ss_pred HHHHHHHHHHHHHH
Q 038201 179 TIVRCNLQSLAQIS 192 (201)
Q Consensus 179 ~i~~~~L~~La~~~ 192 (201)
...-.-|+.|++.+
T Consensus 191 ~~~~~~l~~l~ka~ 204 (207)
T cd08910 191 NGVPNFLKDMQKAC 204 (207)
T ss_pred HhhHHHHHHHHHHH
Confidence 33334445554443
No 68
>PF01852 START: START domain; InterPro: IPR002913 START (StAR-related lipid-transfer) is a lipid-binding domain in StAR, HD-ZIP and signalling proteins []. StAR (Steroidogenic Acute Regulatory protein) is a mitochondrial protein that is synthesised in response to luteinising hormone stimulation []. Expression of the protein in the absence of hormone stimulation is sufficient to induce steroid production, suggesting that this protein is required in the acute regulation of steroidogenesis. Representatives of the START domain family have been shown to bind different ligands such as sterols (StAR protein) and phosphatidylcholine (PC-TP). Ligand binding by the START domain can also regulate the activities of other domains that co-occur with the START domain in multidomain proteins such as Rho-gap, the homeodomain, and the thioesterase domain [, ]. The crystal structure of START domain of human MLN64 shows an alpha/beta fold built around an U-shaped incomplete beta-barrel. Most importantly, the interior of the protein encompasses a 26 x 12 x 11 Angstroms hydrophobic tunnel that is apparently large enough to bind a single cholesterol molecule []. The START domain structure revealed an unexpected similarity to that of the birch pollen allergen Bet v 1 and to bacterial polyketide cyclases/aromatases [, ]. ; PDB: 1JSS_B 2R55_B 1LN3_B 1LN1_A 1LN2_B 3FO5_A 2Z9Y_A 2E3R_A 3H3Q_B 2E3P_B ....
Probab=62.33 E-value=79 Score=25.25 Aligned_cols=115 Identities=13% Similarity=-0.035 Sum_probs=66.3
Q ss_pred EEEEEEEcCChHHHHHHHhCCCCCccccccceEEEEecC-CCCCCeEEEEEEecCC--Ccc----eeEEEEeeecCCCcE
Q 038201 52 SYAVQTINAPLPAVWSVVRRFDNPQAYKHFLKSCHVING-DGHVGTLREVHVISGL--PAA----NSTERLEILDDEHHV 124 (201)
Q Consensus 52 s~v~~~I~ApadkVW~vv~dF~~pk~~p~~V~s~e~~eG-dg~vGsvR~vt~~~G~--p~~----~v~ERL~~lDde~~~ 124 (201)
.-.+..|+++.+++...+.+-.. .|-+.+.++++++- +. -..|..+.+.... |.. .+..+....++....
T Consensus 48 ~k~~~~v~~~~~~~~~~~~~~~~--~Wd~~~~~~~~le~~~~-~~~i~~~~~~~~~~~p~~~RDfv~~~~~~~~~~~~~~ 124 (206)
T PF01852_consen 48 FKAEGVVPASPEQVVEDLLDDRE--QWDKMCVEAEVLEQIDE-DTDIVYFVMKSPWPGPVSPRDFVFLRSWRKDEDGTYV 124 (206)
T ss_dssp EEEEEEESSCHHHHHHHHHCGGG--HHSTTEEEEEEEEEEET-TEEEEEEEEE-CTTTTSSEEEEEEEEEEEECTTSEEE
T ss_pred EEEEEEEcCChHHHHHHHHhhHh--hcccchhhheeeeecCC-CCeEEEEEecccCCCCCCCcEEEEEEEEEEeccceEE
Confidence 34567899999977766654433 56677888888765 21 1566666665543 442 122222223444445
Q ss_pred EEEEEEec-ccC--------CCCeeEEEEEEeecCCCceEEEEEEEeeCCCCCCHH
Q 038201 125 LSFSVIGG-DHR--------LNNYRSVTTLHASPCGTGTVVVESYVCDVPPGNTRE 171 (201)
Q Consensus 125 ~sY~vveg-~~~--------~~~Y~ati~v~p~~~~~~T~v~Ws~~~d~p~g~~~e 171 (201)
+...=++. ..+ ...|.+...+.|.+ ++.|.|.+-...|+ .|....
T Consensus 125 i~~~Si~~~~~~~~~~~~VR~~~~~s~~~i~~~~-~~~~~vt~~~~~D~-~G~iP~ 178 (206)
T PF01852_consen 125 IVSRSIDHPQYPPNSKGYVRAEILISGWVIRPLG-DGRTRVTYVSQVDP-KGWIPS 178 (206)
T ss_dssp EEEEEEEBTTSSTT-TTSEEEEEESEEEEEEEET-TCEEEEEEEEEEES-SSSSHH
T ss_pred EEEeeeccccccccccCcceeeeeeEeEEEEEcc-CCCceEEEEEEECC-CCCChH
Confidence 55533332 222 23455566788885 45699999999994 566653
No 69
>cd08902 START_STARD4-like Lipid-binding START domain of mammalian STARD4 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD4 and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD4 plays an important role in steroidogenesis, trafficking cholesterol into mitochondria. It specifically binds cholesterol, and demonstrates limited binding to another sterol, 7alpha-hydroxycholesterol. STARD4 is ubiquitously expressed, with highest levels in liver and kidney.
Probab=57.54 E-value=1.2e+02 Score=25.74 Aligned_cols=119 Identities=9% Similarity=-0.069 Sum_probs=63.6
Q ss_pred EEEEEcCChHHHHHHHhCCCC-CccccccceEEEEecCCCCCCeE-EEEEEecCCCc----ceeE-EEEeeecCCCcEEE
Q 038201 54 AVQTINAPLPAVWSVVRRFDN-PQAYKHFLKSCHVINGDGHVGTL-REVHVISGLPA----ANST-ERLEILDDEHHVLS 126 (201)
Q Consensus 54 v~~~I~ApadkVW~vv~dF~~-pk~~p~~V~s~e~~eGdg~vGsv-R~vt~~~G~p~----~~v~-ERL~~lDde~~~~s 126 (201)
.+..|+.-.+++|..+.+-.. .+ |-+.+++|++++-=+.-=+| |+++....++. ..+- -+.....+.-.+..
T Consensus 51 ~Egvv~~~~~ev~d~v~~~~~r~~-Wd~~v~~~~Iie~Id~dt~I~~yvt~~~~~~iISpRDFVdv~~~~~~~d~~~s~g 129 (202)
T cd08902 51 AQGVVEDVYNRIVDHIRPGPYRLD-WDSLMTSMDIIEEFEENCCVMRYTTAGQLLNIISPREFVDFSYTTQYEDGLLSCG 129 (202)
T ss_pred EEEEecCCHHHHHHHHhcccchhc-ccchhhheeHhhhhcCCcEEEEEEcccCCcCccCccceEEEEEEEEeCCCeEEEE
Confidence 467778899999999987554 45 66789999998741111233 45444322211 1111 11112222222233
Q ss_pred EEEEecccC-----CCCeeEEEEEEeecCC-CceEEEEEEEeeCCCCCCHHHH
Q 038201 127 FSVIGGDHR-----LNNYRSVTTLHASPCG-TGTVVVESYVCDVPPGNTREET 173 (201)
Q Consensus 127 Y~vveg~~~-----~~~Y~ati~v~p~~~~-~~T~v~Ws~~~d~p~g~~~e~~ 173 (201)
-++.....+ ..++-.-.-+.|..++ .+|.++|-+..|...-......
T Consensus 130 vs~~~~~~ppg~VRgen~p~g~i~~Pl~~~p~k~~~t~~lq~DLkG~LPqsiI 182 (202)
T cd08902 130 VSIEYEEARPNFVRGFNHPCGWFCVPLKDNPSHSLLTGYIQTDLRGMLPQSAV 182 (202)
T ss_pred eeecCCCCCCCeEeecccccEEEEEECCCCCCceEEEEEEEecCCCCccHHHH
Confidence 333333222 2233334557777644 6789999999996533333333
No 70
>cd08909 START_STARD13-like C-terminal lipid-binding START domain of mammalian STARD13 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD13 (also known as DLC-2, Arhgap37, and SDCCAG13) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subfamily also have a RhoGAP domain. The precise function of the START domain in this subgroup is unclear.
Probab=55.87 E-value=1.2e+02 Score=25.46 Aligned_cols=135 Identities=14% Similarity=0.016 Sum_probs=75.5
Q ss_pred EEEEcCChHHHHHHHhCCCCCccccccceEEEEecCCCCCCeEEEEEEecCCCc---ceeEEEEeeecCC--CcEEEEEE
Q 038201 55 VQTINAPLPAVWSVVRRFDNPQAYKHFLKSCHVINGDGHVGTLREVHVISGLPA---ANSTERLEILDDE--HHVLSFSV 129 (201)
Q Consensus 55 ~~~I~ApadkVW~vv~dF~~pk~~p~~V~s~e~~eGdg~vGsvR~vt~~~G~p~---~~v~ERL~~lDde--~~~~sY~v 129 (201)
+++|++|++.|=..+-+ ..+.|-..+++.-.+...|+. =-|-...+.+-.|. ..+.-|--..|.+ ...+.+.=
T Consensus 57 ~~ei~~~p~~VL~~vl~-~R~~WD~~~~~~~~ie~ld~~-tdi~~y~~~~~~P~~~RD~v~~R~w~~~~~~G~~vi~~~S 134 (205)
T cd08909 57 SVEVEAPPSVVLNRVLR-ERHLWDEDFLQWKVVETLDKQ-TEVYQYVLNCMAPHPSRDFVVLRSWRTDLPKGACSLVSVS 134 (205)
T ss_pred EEEeCCCHHHHHHHHHh-hHhhHHhhcceeEEEEEeCCC-cEEEEEEeecCCCCCCCEEEEEEEEEEeCCCCcEEEEEec
Confidence 57889999999887655 347766666655555444531 11111122211111 1333343333332 22222222
Q ss_pred Eecc-cCCCCe-eEE-----EEEEeecCCCceEEEEEEEeeCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 038201 130 IGGD-HRLNNY-RSV-----TTLHASPCGTGTVVVESYVCDVPPGNTREETCTFVDTIVRCNLQSLAQISE 193 (201)
Q Consensus 130 veg~-~~~~~Y-~at-----i~v~p~~~~~~T~v~Ws~~~d~p~g~~~e~~~~~v~~i~~~~L~~La~~~e 193 (201)
++.+ .+..+| ++. ..+.|.+ .++|.+.+-...| |-|..++-....+..+....|..|++.+.
T Consensus 135 v~H~~~p~~g~VRa~~~~~gylI~P~~-~g~trvt~i~~vD-pkG~~P~W~~n~~g~~~~~~~~~~r~sf~ 203 (205)
T cd08909 135 VEHEEAPLLGGVRAVVLDSQYLIEPCG-SGKSRLTHICRVD-LKGHSPEWYNKGFGHLCAAEAARIRNSFQ 203 (205)
T ss_pred CCCCcCCCCCcEEEEEEcCcEEEEECC-CCCEEEEEEEEec-CCCCChHHHHHhHHHHHHHHHHHHHhhcc
Confidence 2222 222333 333 3467764 3679999998999 57888877777777777888888887664
No 71
>PF05586 Ant_C: Anthrax receptor C-terminus region; InterPro: IPR008399 Anthrax is an acute disease in humans and animals caused by the bacterium Bacillus anthracis, which can be lethal. There are effective vaccines against anthrax, and some forms of the disease respond well to antibiotic treatment. The anthrax bacillus is one of only a few that can form long-lived spores. The anthrax toxin consists of the proteins protective antigen (PA) lethal factor (LF) and oedema factor (EF). The first step of toxin entry into host cells is the recognition by PA of a receptor on the surface of the target cell. The subsequent cleavage of receptor-bound PA enables EF and LF to bind and form a heptameric PA63 pre-pore, which triggers endocytosis. PA has been shown to bind to two cellular receptors: anthrax toxin receptor/tumour endothelial marker 8 and capillary morphogenesis protein 2 (CMG2), which are closely related host cell receptors. Both bind to PA with high affinity and are capable of mediating toxicity [, ], and both are type 1 membrane proteins that include an approximately 200-aa extracellular von Willebrand factor A (VWA) domain with a metal ion-dependent adhesion site (MIDAS) motif []. This region is found in the putatively cytoplasmic C terminus of the anthrax receptor.; GO: 0004872 receptor activity, 0016021 integral to membrane
Probab=31.90 E-value=40 Score=25.08 Aligned_cols=37 Identities=19% Similarity=0.333 Sum_probs=27.9
Q ss_pred cccccCCCCCCceeEEEEEEEcCChHHHHHHHh-CCCCCccc
Q 038201 38 PFYHKHTVGPNQCCSYAVQTINAPLPAVWSVVR-RFDNPQAY 78 (201)
Q Consensus 38 ~~~~~~~~~~~~~~s~v~~~I~ApadkVW~vv~-dF~~pk~~ 78 (201)
...|+|.+.+.+|++. |..-.|.+|++++ .++...++
T Consensus 40 ~~~~~~~~~~~kWYtP----IKGrlDALwaLlRr~YDrVSlM 77 (95)
T PF05586_consen 40 KPPPTHKPPQRKWYTP----IKGRLDALWALLRRQYDRVSLM 77 (95)
T ss_pred CCCCCCCCCCCcCccC----ccchHHHHHHHHHhccceeeee
Confidence 4468888999999988 6667789999997 44544433
No 72
>KOG3177 consensus Oligoketide cyclase/lipid transport protein [Lipid transport and metabolism]
Probab=29.97 E-value=3.6e+02 Score=23.23 Aligned_cols=142 Identities=13% Similarity=0.137 Sum_probs=78.5
Q ss_pred CCceeEEEEEEEcCChHHHHHHHhCCCC-CccccccceEEEEecCCCCCCeEEEEEEecCCCc--ceeEEEEeeecCCCc
Q 038201 47 PNQCCSYAVQTINAPLPAVWSVVRRFDN-PQAYKHFLKSCHVINGDGHVGTLREVHVISGLPA--ANSTERLEILDDEHH 123 (201)
Q Consensus 47 ~~~~~s~v~~~I~ApadkVW~vv~dF~~-pk~~p~~V~s~e~~eGdg~vGsvR~vt~~~G~p~--~~v~ERL~~lDde~~ 123 (201)
..||.++ ...|+.+++.++++|++-+. -++. |..++.++..-+..-+.+-.+.. |.|. +...-+++ +++..+
T Consensus 66 r~k~Y~e-rrligysp~~my~vVS~V~~Y~~FV-PwC~kS~V~~~~P~~~~kA~LeV--GFk~l~E~y~S~Vt-~~~p~l 140 (227)
T KOG3177|consen 66 REKAYSE-RRLIGYSPSEMYSVVSNVSEYHEFV-PWCKKSDVTSRRPSGPLKADLEV--GFKPLDERYTSNVT-CVKPHL 140 (227)
T ss_pred HHHHHHH-HhhhCCCHHHHHHHHHhHHHhhccc-cceeccceeecCCCCCceeeEEe--cCcccchhheeeeE-Eecccc
Confidence 4466665 56789999999999998887 4433 56677776543311123333333 4332 23333433 333333
Q ss_pred EEEEEEEecccCCCCeeEEEEEEeecC-CCceEEEEEEEeeCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038201 124 VLSFSVIGGDHRLNNYRSVTTLHASPC-GTGTVVVESYVCDVPPGNTREETCTFVDTIVRCNLQSLAQISENM 195 (201)
Q Consensus 124 ~~sY~vveg~~~~~~Y~ati~v~p~~~-~~~T~v~Ws~~~d~p~g~~~e~~~~~v~~i~~~~L~~La~~~e~~ 195 (201)
+ |.+.-..-++......=++.|..+ .+.|.+.-+..|+...-.--..+..|.+.+...-.++..+.+.++
T Consensus 141 ~--kt~~~d~rLF~~L~t~Wsf~pg~~~p~tc~ldf~v~FeF~S~lhs~va~~Ffd~V~~~~v~AF~~ra~~~ 211 (227)
T KOG3177|consen 141 T--KTVCADGRLFNHLITIWSFKPGPNIPRTCTLDFSVSFEFKSLLHSQVATIFFDEVVKQMVNAFEQRARKL 211 (227)
T ss_pred e--EEeeccccHHHhhhheeeeccCCCCCCeEEEEEEEEEEehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3 333322223444444557777652 256778776666543333334555677777666666666666554
No 73
>PF00028 Cadherin: Cadherin domain; InterPro: IPR002126 Cadherins are a family of adhesion molecules that mediate Ca2+-dependent cell-cell adhesion in all solid tissues of the organism which modulate a wide variety of processes including cell polarisation and migration [, ,]. Cadherin-mediated cell-cell junctions are formed as a result of interaction between extracellular domains of identical cadherins, which are located on the membranes of the neighbouring cells. The stability of these adhesive junctions is ensured by binding of the intracellular cadherin domain with the actin cytoskeleton. There are a number of different isoforms distributed in a tissue-specific manner in a wide variety of organisms. Cells containing different cadherins tend to segregate in vitro, while those that contain the same cadherins tend to preferentially aggregate together. This observation is linked to the finding that cadherin expression causes morphological changes involving the positional segregation of cells into layers, suggesting they may play an important role in the sorting of different cell types during morphogenesis, histogenesis and regeneration. They may also be involved in the regulation of tight and gap junctions, and in the control of intercellular spacing. Cadherins are evolutionary related to the desmogleins which are component of intercellular desmosome junctions involved in the interaction of plaque proteins. Structurally, cadherins comprise a number of domains: classically, these include a signal sequence; a propeptide of around 130 residues; a single transmembrane domain and five tandemly repeated extracellular cadherin domains, 4 of which are cadherin repeats, and the fifth contains 4 conserved cysteines and a N-terminal cytoplasmic domain []. However, proteins are designated as members of the broadly defined cadherin family if they have one or more cadherin repeats. A cadherin repeat is an independently folding sequence of approximately 110 amino acids that contains motifs with the conserved sequences DRE, DXNDNAPXF, and DXD. Crystal structures have revealed that multiple cadherin domains form Ca2+-dependent rod-like structures with a conserved Ca2+-binding pocket at the domain-domain interface. Cadherins depend on calcium for their function: calcium ions bind to specific residues in each cadherin repeat to ensure its proper folding, to confer rigidity upon the extracellular domain and is essential for cadherin adhesive function and for protection against protease digestion.; GO: 0005509 calcium ion binding, 0007156 homophilic cell adhesion, 0016020 membrane; PDB: 2A4E_A 2A4C_B 2O72_A 2QVI_A 1NCJ_A 3Q2W_A 3Q2N_A 3LNH_B 3LNI_A 3Q2L_A ....
Probab=23.81 E-value=2.2e+02 Score=19.53 Aligned_cols=24 Identities=17% Similarity=0.541 Sum_probs=15.6
Q ss_pred eeEEEEeeecCC---CcEEEEEEEecc
Q 038201 110 NSTERLEILDDE---HHVLSFSVIGGD 133 (201)
Q Consensus 110 ~v~ERL~~lDde---~~~~sY~vveg~ 133 (201)
...=++.+.|.+ +..+.|++++++
T Consensus 13 ~~v~~v~a~D~D~~~n~~i~y~i~~~~ 39 (93)
T PF00028_consen 13 TVVGQVTATDPDSGPNSQITYSILGGN 39 (93)
T ss_dssp SEEEEEEEEESSTSTTSSEEEEEEETT
T ss_pred CEEEEEEEEeCCCCCCceEEEEEecCc
Confidence 344456666664 677778888776
No 74
>COG0231 Efp Translation elongation factor P (EF-P)/translation initiation factor 5A (eIF-5A) [Translation, ribosomal structure and biogenesis]
Probab=23.02 E-value=1.2e+02 Score=23.72 Aligned_cols=33 Identities=21% Similarity=0.309 Sum_probs=26.0
Q ss_pred CeEEEEEEecCCCcceeEEEEeeecCCCcEEEEEEEeccc
Q 038201 95 GTLREVHVISGLPAANSTERLEILDDEHHVLSFSVIGGDH 134 (201)
Q Consensus 95 GsvR~vt~~~G~p~~~v~ERL~~lDde~~~~sY~vveg~~ 134 (201)
|.++..+|..+ |+++..+-+++.++|.-.+|+.
T Consensus 49 G~~~e~~f~~~-------~kve~a~ie~~~~q~lY~dg~~ 81 (131)
T COG0231 49 GKKVEKTFKAD-------DKVEVAIVERKTAQYLYIDGDF 81 (131)
T ss_pred CCEEEEEEcCC-------CEEEEeEEeeeeEEEEEcCCCe
Confidence 56666666554 6778788889999999999986
Done!