BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 038203
(155 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4GR5|A Chain A, Crystal Structure Of Slgn1deltaasub In Complex With Ampcpp
pdb|4GR5|B Chain B, Crystal Structure Of Slgn1deltaasub In Complex With Ampcpp
pdb|4GR5|C Chain C, Crystal Structure Of Slgn1deltaasub In Complex With Ampcpp
pdb|4GR5|D Chain D, Crystal Structure Of Slgn1deltaasub In Complex With Ampcpp
Length = 570
Score = 32.3 bits (72), Expect = 0.11, Method: Composition-based stats.
Identities = 17/47 (36%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
Query: 46 LEPQD-EDRPVKCPMPSASSVINNDSRMEDQERIADSFRKRAEVPPD 91
+EP + E R V P ++V+ DSR+ D++ +A +RA+ PPD
Sbjct: 479 VEPGEVEARLVGHPAVRQAAVLAQDSRLGDKQLVAYVVAERADAPPD 525
>pdb|3HZE|A Chain A, Crystal Structure Of Ycf54 Protein From
Thermosynechococcus Elongatus, Northeast Structural
Genomics Consortium Target Ter59
pdb|3HZE|B Chain B, Crystal Structure Of Ycf54 Protein From
Thermosynechococcus Elongatus, Northeast Structural
Genomics Consortium Target Ter59
pdb|3HZE|C Chain C, Crystal Structure Of Ycf54 Protein From
Thermosynechococcus Elongatus, Northeast Structural
Genomics Consortium Target Ter59
pdb|3HZE|D Chain D, Crystal Structure Of Ycf54 Protein From
Thermosynechococcus Elongatus, Northeast Structural
Genomics Consortium Target Ter59
pdb|3HZE|E Chain E, Crystal Structure Of Ycf54 Protein From
Thermosynechococcus Elongatus, Northeast Structural
Genomics Consortium Target Ter59
pdb|3HZE|F Chain F, Crystal Structure Of Ycf54 Protein From
Thermosynechococcus Elongatus, Northeast Structural
Genomics Consortium Target Ter59
Length = 114
Score = 28.5 bits (62), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 12/41 (29%), Positives = 23/41 (56%), Gaps = 3/41 (7%)
Query: 36 ELEFWPVEHPL---EPQDEDRPVKCPMPSASSVINNDSRME 73
E++FW V P +PQ ++ +CP P+A+ + N ++
Sbjct: 37 EIDFWLVPEPAFLEQPQFAEQKARCPQPAAAIISTNQQFIQ 77
>pdb|3JSR|A Chain A, X-ray Structure Of All0216 Protein From Nostoc Sp. Pcc
7120 At The Resolution 1.8a. Northeast Structural
Genomics Consortium Target Nsr236
Length = 119
Score = 27.7 bits (60), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 3/37 (8%)
Query: 36 ELEFWPVEHP--LE-PQDEDRPVKCPMPSASSVINND 69
E++FW V P LE P+ D KCP P+A+ + N
Sbjct: 39 EIDFWLVPQPAFLEAPEFADIKAKCPQPAAAIISTNS 75
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.133 0.389
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,713,967
Number of Sequences: 62578
Number of extensions: 175627
Number of successful extensions: 366
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 362
Number of HSP's gapped (non-prelim): 8
length of query: 155
length of database: 14,973,337
effective HSP length: 91
effective length of query: 64
effective length of database: 9,278,739
effective search space: 593839296
effective search space used: 593839296
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 47 (22.7 bits)