BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 038203
         (155 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|A9T6G5|TRM5_PHYPA tRNA (guanine(37)-N1)-methyltransferase OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_141055 PE=3 SV=1
          Length = 480

 Score = 34.7 bits (78), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 21/66 (31%), Positives = 37/66 (56%), Gaps = 4/66 (6%)

Query: 27  VNVMEHEL-LELEFWPVEHPLEPQDEDRPVKCPMPSASSVINNDSRMEDQERIADSFRKR 85
           ++V++HE+ L+  +WPVEH L+   E  P  C +PS+   I + + +  +E +    +  
Sbjct: 92  LDVVQHEVVLDYSYWPVEHILK---EILPAGCEVPSSFETIGHIAHLNLREDLLTYKKII 148

Query: 86  AEVPPD 91
           AEV  D
Sbjct: 149 AEVILD 154


>sp|P97929|BRCA2_MOUSE Breast cancer type 2 susceptibility protein homolog OS=Mus musculus
            GN=Brca2 PE=1 SV=2
          Length = 3329

 Score = 31.6 bits (70), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 3/49 (6%)

Query: 86   AEVPPDFSNREGIDVNIEPPIRAVRKRHHHSLTSDDHNAQSL-MRTPPH 133
            ++VPPD  N EG    I P + A ++R+ H  T +++  Q L   T PH
Sbjct: 1743 SDVPPDMKNAEG--NTISPRVSATKERNLHPQTINEYCVQKLETNTSPH 1789


>sp|Q9WTS5|TEN2_MOUSE Teneurin-2 OS=Mus musculus GN=Tenm2 PE=2 SV=1
          Length = 2764

 Score = 29.6 bits (65), Expect = 7.6,   Method: Composition-based stats.
 Identities = 23/93 (24%), Positives = 37/93 (39%), Gaps = 11/93 (11%)

Query: 54  PVKCPMPSASSVINND--SRMEDQERIADSFRKRA---------EVPPDFSNREGIDVNI 102
           PV C MP   S  ++       D+E   +S+  RA           PP+  ++  +   +
Sbjct: 193 PVSCQMPLLDSNTSHQIMDTNPDEEFSPNSYLLRACSGPQQASSSGPPNHHSQSTLRPPL 252

Query: 103 EPPIRAVRKRHHHSLTSDDHNAQSLMRTPPHPP 135
            PP       HH S  S + N+ +  R+  H P
Sbjct: 253 PPPHNHTLSHHHSSANSLNRNSLTNRRSQIHAP 285


>sp|Q9R1K2|TEN2_RAT Teneurin-2 OS=Rattus norvegicus GN=Tenm2 PE=1 SV=2
          Length = 2774

 Score = 29.6 bits (65), Expect = 7.8,   Method: Composition-based stats.
 Identities = 23/93 (24%), Positives = 37/93 (39%), Gaps = 11/93 (11%)

Query: 54  PVKCPMPSASSVINND--SRMEDQERIADSFRKRA---------EVPPDFSNREGIDVNI 102
           PV C MP   S  ++       D+E   +S+  RA           PP+  ++  +   +
Sbjct: 193 PVSCQMPLLDSNTSHQIMDTNPDEEFSPNSYLLRACSGPQQASSSGPPNHHSQSTLRPPL 252

Query: 103 EPPIRAVRKRHHHSLTSDDHNAQSLMRTPPHPP 135
            PP       HH S  S + N+ +  R+  H P
Sbjct: 253 PPPHNHTLSHHHSSANSLNRNSLTNRRSQIHAP 285


>sp|Q9NT68|TEN2_HUMAN Teneurin-2 OS=Homo sapiens GN=TENM2 PE=1 SV=3
          Length = 2774

 Score = 29.6 bits (65), Expect = 8.4,   Method: Composition-based stats.
 Identities = 23/93 (24%), Positives = 37/93 (39%), Gaps = 11/93 (11%)

Query: 54  PVKCPMPSASSVINND--SRMEDQERIADSFRKRA---------EVPPDFSNREGIDVNI 102
           PV C MP   S  ++       D+E   +S+  RA           PP+  ++  +   +
Sbjct: 193 PVSCQMPLLDSNTSHQIMDTNPDEEFSPNSYLLRACSGPQQASSSGPPNHHSQSTLRPPL 252

Query: 103 EPPIRAVRKRHHHSLTSDDHNAQSLMRTPPHPP 135
            PP       HH S  S + N+ +  R+  H P
Sbjct: 253 PPPHNHTLSHHHSSANSLNRNSLTNRRSQIHAP 285


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.315    0.133    0.389 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 60,351,348
Number of Sequences: 539616
Number of extensions: 2469347
Number of successful extensions: 5458
Number of sequences better than 100.0: 34
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 34
Number of HSP's that attempted gapping in prelim test: 5456
Number of HSP's gapped (non-prelim): 36
length of query: 155
length of database: 191,569,459
effective HSP length: 107
effective length of query: 48
effective length of database: 133,830,547
effective search space: 6423866256
effective search space used: 6423866256
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 56 (26.2 bits)