Query 038203
Match_columns 155
No_of_seqs 27 out of 29
Neff 2.4
Searched_HMMs 46136
Date Fri Mar 29 08:38:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038203.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/038203hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG2033 Desulfoferrodoxin [Ene 69.4 3.2 7E-05 33.1 1.8 35 11-50 34-68 (126)
2 PHA03151 hypothetical protein; 66.1 11 0.00023 33.1 4.4 80 49-137 163-248 (259)
3 cd03172 SORL_classII Superoxid 32.5 36 0.00079 25.0 2.0 37 10-49 3-41 (104)
4 PF07514 TraI_2: Putative heli 21.1 64 0.0014 28.1 1.8 23 132-154 297-319 (327)
5 KOG4501 Transcription coactiva 18.3 97 0.0021 30.7 2.5 62 57-124 620-692 (707)
6 KOG4027 Uncharacterized conser 17.7 35 0.00076 28.9 -0.5 44 36-88 100-144 (187)
7 COG5189 SFP1 Putative transcri 14.8 70 0.0015 29.8 0.6 9 53-61 348-356 (423)
8 PRK13867 type IV secretion sys 12.6 91 0.002 22.5 0.6 9 53-61 50-58 (65)
9 cd04338 Rieske_RO_Alpha_Tic55 12.4 1.3E+02 0.0029 22.4 1.4 43 30-73 79-122 (134)
10 PF07629 DUF1590: Protein of u 12.0 1E+02 0.0022 19.6 0.6 7 55-61 5-11 (32)
No 1
>COG2033 Desulfoferrodoxin [Energy production and conversion]
Probab=69.43 E-value=3.2 Score=33.09 Aligned_cols=35 Identities=29% Similarity=0.442 Sum_probs=23.8
Q ss_pred cccceeEeeeeecccccccccccccccceeeccCCCCCCC
Q 038203 11 KKEKQVILIDERQSRGVNVMEHELLELEFWPVEHPLEPQD 50 (155)
Q Consensus 11 ~~e~~~~Lide~~~~~~~~~~H~v~~~EF~PVEHP~EP~d 50 (155)
++|++++.|...+.. +.++| .|+-.-|.|||||.-
T Consensus 34 ~kEKHVPvIE~~~~~----~~~~V-~VsVG~IpHPmt~eH 68 (126)
T COG2033 34 KKEKHVPVIEVEGAG----DLVEV-KVSVGEIPHPMTPEH 68 (126)
T ss_pred cccccCCeEEecCCC----CcEEE-EEEEcccCCCCCCce
Confidence 789999999776622 33555 223337999999863
No 2
>PHA03151 hypothetical protein; Provisional
Probab=66.15 E-value=11 Score=33.10 Aligned_cols=80 Identities=26% Similarity=0.494 Sum_probs=50.9
Q ss_pred CCCCCCccCCCCCCCccccCCCcchhhhhhhhhhhhhcCCCcccccCCCccc----cCCCchhhhhhcccCcccc--CCc
Q 038203 49 QDEDRPVKCPMPSASSVINNDSRMEDQERIADSFRKRAEVPPDFSNREGIDV----NIEPPIRAVRKRHHHSLTS--DDH 122 (155)
Q Consensus 49 ~d~DrPVkCP~Pe~~SIi~~DGriw~~er~a~s~RrR~d~~~~v~~~eg~~~----~~~PP~raVrKRh~htlt~--g~~ 122 (155)
.|+.++--|=..|.++ || +..-+.+-+|.|++.+ +.+.-|+-. ..+||++..||||-|-+.. +--
T Consensus 163 e~i~~~~~~~~qeDS~----ds---e~d~Ve~firqra~ma--~~k~k~krsistSDde~pRksr~kr~s~risSS~dSd 233 (259)
T PHA03151 163 EEITSEEDCCVQEDSS----DS---EEDVVEAFIRQRAQMA--GKKKKGKRSISTSDDEPPRKSRRKRHSHRISSSTDSD 233 (259)
T ss_pred ccccCccccccccccc----cc---cchHHHHHHHHHHHHh--ccccCCccccccCCCcccchhhhhccccccccccccc
Confidence 5666777787777333 33 2344556888899987 555555543 7899999999999887754 222
Q ss_pred cccccccCCCCCCCC
Q 038203 123 NAQSLMRTPPHPPLQ 137 (155)
Q Consensus 123 ~~~~l~R~~~~p~~~ 137 (155)
--.|-..|.--|++-
T Consensus 234 de~Pr~kMtgtPp~t 248 (259)
T PHA03151 234 DEEPRHKMTGTPPMT 248 (259)
T ss_pred cccccccccCCCccc
Confidence 233445554444443
No 3
>cd03172 SORL_classII Superoxide reductase-like (SORL) domain, class II; SORL-domains are present in a family of mononuclear non-heme iron proteins that includes superoxide reductase and desulfoferrodoxin. Superoxide reductase-like proteins scavenge superoxide anion radicals as a defense mechanism against reactive oxygen species and are found in anaerobic bacteria and archeae, and microaerophilic Treponema pallidum. The SORL domain contains an active iron site, Fe[His4Cys(Glu)], which in the reduced state loses the glutamate ligand. Superoxide reductase (class II) forms a homotetramer with four Fe[His4Cys(Glu)] centers.
Probab=32.47 E-value=36 Score=25.04 Aligned_cols=37 Identities=27% Similarity=0.333 Sum_probs=20.6
Q ss_pred ccccceeEeeeeec--ccccccccccccccceeeccCCCCCC
Q 038203 10 DKKEKQVILIDERQ--SRGVNVMEHELLELEFWPVEHPLEPQ 49 (155)
Q Consensus 10 d~~e~~~~Lide~~--~~~~~~~~H~v~~~EF~PVEHP~EP~ 49 (155)
++.|+++|.|.-.. ..|-.....-.++.| |+|||++.
T Consensus 3 ~~~eKHvPvi~~p~~~k~ge~~~V~V~vG~~---v~HPM~~~ 41 (104)
T cd03172 3 DKEEKHVPVIECPEAVKAGEPFEVTVSVGKE---IPHPNTTE 41 (104)
T ss_pred cccCCCCcEEEeCCcccCCCcEEEEEEECCc---ccCCCCCC
Confidence 46788888887532 111111222223333 89999986
No 4
>PF07514 TraI_2: Putative helicase; InterPro: IPR011119 The members of this family are restricted to the proteobacteria. Some members have been annotated as helicase, conjugative relaxase or nickase. The majority contain an HD domain, which is found in a superfamily of enzymes with a predicted or known phosphohydrolase activity. These enzymes appear to be involved in the nucleic acid metabolism, signal transduction and possibly other functions in bacteria.
Probab=21.08 E-value=64 Score=28.09 Aligned_cols=23 Identities=26% Similarity=0.411 Sum_probs=18.4
Q ss_pred CCCCCCCCCchHHHHhhhccccC
Q 038203 132 PHPPLQSQKITVLEMLQDFDKFE 154 (155)
Q Consensus 132 ~~p~~~~qnvti~~~lqq~dkFe 154 (155)
-++-+|++|.|+|.|||+-.=+|
T Consensus 297 g~~giP~~~~~l~d~l~~~g~~~ 319 (327)
T PF07514_consen 297 GIPGIPSDNDTLFDILQEHGLIE 319 (327)
T ss_pred CCCCCCCCcHHHHHHHHHCCcee
Confidence 55678999999999999865443
No 5
>KOG4501 consensus Transcription coactivator complex, P100 component [Transcription]
Probab=18.32 E-value=97 Score=30.67 Aligned_cols=62 Identities=19% Similarity=0.156 Sum_probs=33.7
Q ss_pred CCCCCCCccccCCCcchhhhhhhhhhhhhcCCC----------cccccCC-CccccCCCchhhhhhcccCccccCCccc
Q 038203 57 CPMPSASSVINNDSRMEDQERIADSFRKRAEVP----------PDFSNRE-GIDVNIEPPIRAVRKRHHHSLTSDDHNA 124 (155)
Q Consensus 57 CP~Pe~~SIi~~DGriw~~er~a~s~RrR~d~~----------~~v~~~e-g~~~~~~PP~raVrKRh~htlt~g~~~~ 124 (155)
---|+ ||-...|+++| +++.. |||...- +++.+.. |.+-+..--+.+-||++ |--|+-|||-
T Consensus 620 ~~~p~-Ps~f~enp~v~-R~~~e---~rr~~~~~~k~~~h~~s~sv~gsp~g~gqs~~t~r~Rg~kea-~k~traNHNr 692 (707)
T KOG4501|consen 620 NVNPN-PSDFRENPRVW-RGVRE---RRRGVVNREKPQEHSNSSSVNGSPVGTGQSNGTGRGRGRKEA-GKGTRANHNR 692 (707)
T ss_pred CCCCC-chhcccChHHH-HHHHH---hhcceecccccCCCCCcccccCCCCCcccccccccccccccc-cCccccccch
Confidence 33456 66666699999 77655 3443221 1111100 11112233367788998 8888877764
No 6
>KOG4027 consensus Uncharacterized conserved protein [Function unknown]
Probab=17.75 E-value=35 Score=28.85 Aligned_cols=44 Identities=25% Similarity=0.414 Sum_probs=33.0
Q ss_pred ccceeeccCCCCCCCCCCCccCCCCCCCccccCCCcchhhhhhhhhhhhh-cCC
Q 038203 36 ELEFWPVEHPLEPQDEDRPVKCPMPSASSVINNDSRMEDQERIADSFRKR-AEV 88 (155)
Q Consensus 36 ~~EF~PVEHP~EP~d~DrPVkCP~Pe~~SIi~~DGriw~~er~a~s~RrR-~d~ 88 (155)
-.-|.-|-=|.||.-+-.-|-|=+||.+|-+. + +..|+||| .|+
T Consensus 100 v~GYg~~hiP~~pgrh~~~vp~f~Pe~~s~~q-~--------~tswl~rr~pE~ 144 (187)
T KOG4027|consen 100 VTGYGMLHIPTEPGRHVCRVPCFLPEPSSTVQ-Q--------LTSWLRRRNPEF 144 (187)
T ss_pred eeeeeeEecCcCCCceeEEEeeEecCCHHHHH-H--------HHHHHHhcCccc
Confidence 34566777899999999999999999777777 3 23466665 465
No 7
>COG5189 SFP1 Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
Probab=14.79 E-value=70 Score=29.83 Aligned_cols=9 Identities=44% Similarity=1.220 Sum_probs=8.5
Q ss_pred CCccCCCCC
Q 038203 53 RPVKCPMPS 61 (155)
Q Consensus 53 rPVkCP~Pe 61 (155)
||+|||++-
T Consensus 348 KpykCpV~g 356 (423)
T COG5189 348 KPYKCPVEG 356 (423)
T ss_pred ceecCCCCC
Confidence 999999987
No 8
>PRK13867 type IV secretion system chaperone VirE1; Provisional
Probab=12.60 E-value=91 Score=22.52 Aligned_cols=9 Identities=33% Similarity=1.080 Sum_probs=7.3
Q ss_pred CCccCCCCC
Q 038203 53 RPVKCPMPS 61 (155)
Q Consensus 53 rPVkCP~Pe 61 (155)
=-.+||+||
T Consensus 50 fvl~cplpe 58 (65)
T PRK13867 50 FVLRCPLPE 58 (65)
T ss_pred hhhcCCCCc
Confidence 346999999
No 9
>cd04338 Rieske_RO_Alpha_Tic55 Tic55 is a 55kDa LLS1-related non-heme iron oxygenase associated with protein transport through the plant inner chloroplast membrane. This domain represents the N-terminal Rieske domain of the Tic55 oxygenase alpha subunit. Tic55 is closely related to the oxygenase alpha subunits of a small subfamily of enzymes found in plants as well as oxygenic cyanobacterial photosynthesizers including LLS1 (lethal leaf spot 1, also known as PaO), Ptc52, and ACD1 (accelerated cell death 1). ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth. The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis.
Probab=12.44 E-value=1.3e+02 Score=22.42 Aligned_cols=43 Identities=19% Similarity=0.041 Sum_probs=28.7
Q ss_pred ccccc-cccceeeccCCCCCCCCCCCccCCCCCCCccccCCCcch
Q 038203 30 MEHEL-LELEFWPVEHPLEPQDEDRPVKCPMPSASSVINNDSRME 73 (155)
Q Consensus 30 ~~H~v-~~~EF~PVEHP~EP~d~DrPVkCP~Pe~~SIi~~DGriw 73 (155)
-.||- |+.+=..+.-|..|.+.+.|-+..++.-+..+. +|.||
T Consensus 79 P~Hgw~Fd~~G~~~~~P~~~~~~~~~~~~~l~~y~v~~~-~G~V~ 122 (134)
T cd04338 79 LYHGWQFGGEGKCVKIPQLPADAKIPKNACVKSYEVRDS-QGVVW 122 (134)
T ss_pred cCCCCEECCCCCEEECCCCCccCCCCcccCcceEeEEEE-CCEEE
Confidence 34565 555556777777776666665566777666666 88888
No 10
>PF07629 DUF1590: Protein of unknown function (DUF1590); InterPro: IPR011481 These hypothetical proteins in Rhodopirellula baltica have a conserved C-terminal region.
Probab=11.98 E-value=1e+02 Score=19.62 Aligned_cols=7 Identities=43% Similarity=1.193 Sum_probs=5.7
Q ss_pred ccCCCCC
Q 038203 55 VKCPMPS 61 (155)
Q Consensus 55 VkCP~Pe 61 (155)
..||+||
T Consensus 5 a~~pppe 11 (32)
T PF07629_consen 5 ADCPPPE 11 (32)
T ss_pred CCCCCCc
Confidence 4699999
Done!