Query 038203
Match_columns 155
No_of_seqs 27 out of 29
Neff 2.4
Searched_HMMs 29240
Date Mon Mar 25 14:39:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038203.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/038203hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2emg_A Zinc finger protein 484 26.9 28 0.00095 18.7 1.4 10 51-60 37-46 (46)
2 2en9_A Zinc finger protein 28 20.1 40 0.0014 18.1 1.1 9 52-60 38-46 (46)
3 2ytp_A Zinc finger protein 484 20.1 42 0.0014 18.0 1.2 10 51-60 37-46 (46)
4 2emi_A Zinc finger protein 484 18.6 47 0.0016 17.7 1.2 10 51-60 37-46 (46)
5 2eor_A Zinc finger protein 224 17.8 50 0.0017 17.5 1.2 8 52-59 38-45 (46)
6 3btp_B Protein VIRE1; TIM barr 17.7 39 0.0013 23.3 0.8 7 55-61 52-58 (63)
7 2eln_A Zinc finger protein 406 17.5 39 0.0013 19.2 0.7 11 51-61 6-16 (38)
8 2em4_A Zinc finger protein 28 15.7 57 0.002 17.4 1.1 8 52-59 38-45 (46)
9 1bhi_A CRE-BP1, ATF-2; CRE bin 15.4 53 0.0018 16.6 0.9 11 51-61 3-13 (38)
10 2ytf_A Zinc finger protein 268 14.6 65 0.0022 17.0 1.1 9 51-59 37-45 (46)
No 1
>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=26.89 E-value=28 Score=18.68 Aligned_cols=10 Identities=20% Similarity=0.215 Sum_probs=7.2
Q ss_pred CCCCccCCCC
Q 038203 51 EDRPVKCPMP 60 (155)
Q Consensus 51 ~DrPVkCP~P 60 (155)
.++|++|+.|
T Consensus 37 ~~~~~~C~~~ 46 (46)
T 2emg_A 37 GERPSGPSSG 46 (46)
T ss_dssp CCCCSCSCCC
T ss_pred CCCCCCCCCC
Confidence 3578888864
No 2
>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=20.12 E-value=40 Score=18.08 Aligned_cols=9 Identities=11% Similarity=0.194 Sum_probs=6.1
Q ss_pred CCCccCCCC
Q 038203 52 DRPVKCPMP 60 (155)
Q Consensus 52 DrPVkCP~P 60 (155)
++|++|+.+
T Consensus 38 ~k~~~C~~~ 46 (46)
T 2en9_A 38 EKPSGPSSG 46 (46)
T ss_dssp SCCCSCCCC
T ss_pred CCCCCCCCC
Confidence 577888753
No 3
>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=20.09 E-value=42 Score=18.00 Aligned_cols=10 Identities=10% Similarity=0.149 Sum_probs=7.0
Q ss_pred CCCCccCCCC
Q 038203 51 EDRPVKCPMP 60 (155)
Q Consensus 51 ~DrPVkCP~P 60 (155)
.++|++|+.+
T Consensus 37 ~~k~~~C~~~ 46 (46)
T 2ytp_A 37 GEKPSGPSSG 46 (46)
T ss_dssp CCCCCSSCCC
T ss_pred CCCCCCCCCC
Confidence 3578888753
No 4
>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=18.62 E-value=47 Score=17.72 Aligned_cols=10 Identities=10% Similarity=0.149 Sum_probs=6.8
Q ss_pred CCCCccCCCC
Q 038203 51 EDRPVKCPMP 60 (155)
Q Consensus 51 ~DrPVkCP~P 60 (155)
.++|++|+.+
T Consensus 37 ~~k~~~C~~~ 46 (46)
T 2emi_A 37 GEKPSGPSSG 46 (46)
T ss_dssp SCCCCSCCCC
T ss_pred CCCCCCCCCC
Confidence 3578888754
No 5
>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=17.75 E-value=50 Score=17.51 Aligned_cols=8 Identities=13% Similarity=0.285 Sum_probs=5.5
Q ss_pred CCCccCCC
Q 038203 52 DRPVKCPM 59 (155)
Q Consensus 52 DrPVkCP~ 59 (155)
++|++|+.
T Consensus 38 ~kp~~C~~ 45 (46)
T 2eor_A 38 EKPSGPSS 45 (46)
T ss_dssp CCCSSSTT
T ss_pred CCCCCCCC
Confidence 46777765
No 6
>3btp_B Protein VIRE1; TIM barrel, unique topology, novel fold, structural genomics structural proteomics center, ISPC, crown GALL tumor; 2.30A {Agrobacterium tumefaciens str}
Probab=17.69 E-value=39 Score=23.26 Aligned_cols=7 Identities=43% Similarity=1.526 Sum_probs=6.3
Q ss_pred ccCCCCC
Q 038203 55 VKCPMPS 61 (155)
Q Consensus 55 VkCP~Pe 61 (155)
.+||+||
T Consensus 52 l~CPLPE 58 (63)
T 3btp_B 52 LHCPLPE 58 (63)
T ss_dssp HTCCCCC
T ss_pred hcCCCch
Confidence 5899999
No 7
>2eln_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=17.55 E-value=39 Score=19.22 Aligned_cols=11 Identities=27% Similarity=0.570 Sum_probs=8.6
Q ss_pred CCCCccCCCCC
Q 038203 51 EDRPVKCPMPS 61 (155)
Q Consensus 51 ~DrPVkCP~Pe 61 (155)
.++|++|+.+.
T Consensus 6 gekp~~C~~~~ 16 (38)
T 2eln_A 6 SGILLKCPTDG 16 (38)
T ss_dssp CCCCEECSSSS
T ss_pred CCCCCCCCCCC
Confidence 47999998754
No 8
>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=15.68 E-value=57 Score=17.43 Aligned_cols=8 Identities=13% Similarity=0.285 Sum_probs=5.7
Q ss_pred CCCccCCC
Q 038203 52 DRPVKCPM 59 (155)
Q Consensus 52 DrPVkCP~ 59 (155)
++|++|+.
T Consensus 38 ~k~~~C~~ 45 (46)
T 2em4_A 38 EKPSGPSS 45 (46)
T ss_dssp SSCCCCCC
T ss_pred CCCCCCCC
Confidence 57788875
No 9
>1bhi_A CRE-BP1, ATF-2; CRE binding protein, transcriptional activation domain, Zn finger, DNA-binding regulatory protein; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=15.43 E-value=53 Score=16.63 Aligned_cols=11 Identities=36% Similarity=1.047 Sum_probs=8.6
Q ss_pred CCCCccCCCCC
Q 038203 51 EDRPVKCPMPS 61 (155)
Q Consensus 51 ~DrPVkCP~Pe 61 (155)
.++|++|+.|.
T Consensus 3 ~~k~~~C~~~~ 13 (38)
T 1bhi_A 3 DDKPFLCTAPG 13 (38)
T ss_dssp TCCCEECCCTT
T ss_pred CCcceECCCCC
Confidence 46899999765
No 10
>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=14.56 E-value=65 Score=17.03 Aligned_cols=9 Identities=11% Similarity=0.224 Sum_probs=6.2
Q ss_pred CCCCccCCC
Q 038203 51 EDRPVKCPM 59 (155)
Q Consensus 51 ~DrPVkCP~ 59 (155)
.++|++|+.
T Consensus 37 ~~k~~~C~~ 45 (46)
T 2ytf_A 37 GEKPSGPSS 45 (46)
T ss_dssp SSSSSCCCC
T ss_pred CCCCCCCCC
Confidence 357788875
Done!