Query 038203
Match_columns 155
No_of_seqs 27 out of 29
Neff 2.4
Searched_HMMs 13730
Date Mon Mar 25 14:39:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038203.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/038203hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1dqia_ b.1.13.1 (A:) Superoxi 46.8 4 0.00029 28.7 1.7 35 10-48 11-45 (124)
2 d1zfda_ g.37.1.1 (A:) SWI5 zin 44.7 4 0.00029 22.8 1.2 10 52-61 1-10 (32)
3 d1sp2a_ g.37.1.1 (A:) Transcri 35.9 6.2 0.00045 21.6 1.1 9 53-61 1-9 (31)
4 d1ubdc4 g.37.1.1 (C:381-408) Y 26.8 10 0.00076 20.5 0.9 9 53-61 1-9 (28)
5 d1a1ia1 g.37.1.1 (A:103-131) Z 22.7 11 0.00082 20.4 0.5 9 53-61 1-9 (29)
6 d2glia3 g.37.1.1 (A:168-197) F 21.2 17 0.0012 19.7 1.1 9 53-61 1-9 (30)
7 d1ubdc3 g.37.1.1 (C:351-380) Y 17.2 17 0.0013 19.5 0.5 9 53-61 1-9 (30)
8 d1bhia_ g.37.1.1 (A:) Transact 16.3 23 0.0017 20.8 1.0 11 51-61 3-13 (38)
9 d1p7aa_ g.37.1.1 (A:) Kruppel- 16.2 21 0.0016 19.6 0.8 11 51-61 8-18 (37)
10 d1ncsa_ g.37.1.1 (A:) SWI5 zin 14.5 23 0.0017 20.5 0.7 13 49-61 13-25 (47)
No 1
>d1dqia_ b.1.13.1 (A:) Superoxide reductase (SOR) {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Probab=46.83 E-value=4 Score=28.68 Aligned_cols=35 Identities=26% Similarity=0.220 Sum_probs=18.4
Q ss_pred ccccceeEeeeeecccccccccccccccceeeccCCCCC
Q 038203 10 DKKEKQVILIDERQSRGVNVMEHELLELEFWPVEHPLEP 48 (155)
Q Consensus 10 d~~e~~~~Lide~~~~~~~~~~H~v~~~EF~PVEHP~EP 48 (155)
.++|+++|.|.-.. .+..+....-++ ..|+|||++
T Consensus 11 ~~~EKHvPvIe~~~-~g~~~~V~V~VG---~ei~HPM~~ 45 (124)
T d1dqia_ 11 WKGEKHVPVIEYER-EGELVKVKVQVG---KEIPHPNTT 45 (124)
T ss_dssp BTTBCCSCEEEEEE-ETTEEEEEEESC---SSSCCCCSS
T ss_pred cccCCcCCEEEEeC-CCcEEEEEEecC---CcccCCCCC
Confidence 36789999984332 221111111111 248999985
No 2
>d1zfda_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=44.73 E-value=4 Score=22.75 Aligned_cols=10 Identities=50% Similarity=1.115 Sum_probs=9.0
Q ss_pred CCCccCCCCC
Q 038203 52 DRPVKCPMPS 61 (155)
Q Consensus 52 DrPVkCP~Pe 61 (155)
|||++|+.|.
T Consensus 1 ErP~~C~~pg 10 (32)
T d1zfda_ 1 DRPYSCDHPG 10 (32)
T ss_dssp CCSBCCCCTT
T ss_pred CcCeECcCCC
Confidence 6999999987
No 3
>d1sp2a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=35.92 E-value=6.2 Score=21.59 Aligned_cols=9 Identities=33% Similarity=0.744 Sum_probs=8.0
Q ss_pred CCccCCCCC
Q 038203 53 RPVKCPMPS 61 (155)
Q Consensus 53 rPVkCP~Pe 61 (155)
||++||.|.
T Consensus 1 kpf~C~~~~ 9 (31)
T d1sp2a_ 1 RPFMCTWSY 9 (31)
T ss_dssp CCCBCCSTT
T ss_pred CcCCCcCCC
Confidence 699999987
No 4
>d1ubdc4 g.37.1.1 (C:381-408) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}
Probab=26.76 E-value=10 Score=20.51 Aligned_cols=9 Identities=44% Similarity=1.106 Sum_probs=7.7
Q ss_pred CCccCCCCC
Q 038203 53 RPVKCPMPS 61 (155)
Q Consensus 53 rPVkCP~Pe 61 (155)
||++|+.|.
T Consensus 1 rPf~C~~~g 9 (28)
T d1ubdc4 1 RPYVCPFDG 9 (28)
T ss_dssp CCCCCCSTT
T ss_pred CCcCCCCCC
Confidence 789999886
No 5
>d1a1ia1 g.37.1.1 (A:103-131) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=22.74 E-value=11 Score=20.40 Aligned_cols=9 Identities=56% Similarity=1.228 Sum_probs=7.8
Q ss_pred CCccCCCCC
Q 038203 53 RPVKCPMPS 61 (155)
Q Consensus 53 rPVkCP~Pe 61 (155)
||++|+.|.
T Consensus 1 Kp~~C~~~g 9 (29)
T d1a1ia1 1 RPYACPVES 9 (29)
T ss_dssp CCEECCSTT
T ss_pred CCeECCCCC
Confidence 689999887
No 6
>d2glia3 g.37.1.1 (A:168-197) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=21.24 E-value=17 Score=19.75 Aligned_cols=9 Identities=33% Similarity=0.910 Sum_probs=7.8
Q ss_pred CCccCCCCC
Q 038203 53 RPVKCPMPS 61 (155)
Q Consensus 53 rPVkCP~Pe 61 (155)
||++|+.|.
T Consensus 1 kp~~C~~~g 9 (30)
T d2glia3 1 KPHKCTFEG 9 (30)
T ss_dssp CCCCCCSTT
T ss_pred CCeeCCCCC
Confidence 789999887
No 7
>d1ubdc3 g.37.1.1 (C:351-380) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}
Probab=17.21 E-value=17 Score=19.55 Aligned_cols=9 Identities=22% Similarity=0.925 Sum_probs=7.5
Q ss_pred CCccCCCCC
Q 038203 53 RPVKCPMPS 61 (155)
Q Consensus 53 rPVkCP~Pe 61 (155)
||++|+.|.
T Consensus 1 kp~~C~~~g 9 (30)
T d1ubdc3 1 KPFQCTFEG 9 (30)
T ss_dssp CCEECCSTT
T ss_pred CCccCCCCC
Confidence 689998876
No 8
>d1bhia_ g.37.1.1 (A:) Transactivation domain of cre-bp1/atf-2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=16.34 E-value=23 Score=20.83 Aligned_cols=11 Identities=36% Similarity=1.047 Sum_probs=9.8
Q ss_pred CCCCccCCCCC
Q 038203 51 EDRPVKCPMPS 61 (155)
Q Consensus 51 ~DrPVkCP~Pe 61 (155)
.|||+.|..|-
T Consensus 3 ddkPF~C~~pG 13 (38)
T d1bhia_ 3 DDKPFLCTAPG 13 (38)
T ss_dssp TCCCEECCCTT
T ss_pred CCCceecCCCC
Confidence 39999999987
No 9
>d1p7aa_ g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (Mus musculus) [TaxId: 10090]}
Probab=16.17 E-value=21 Score=19.57 Aligned_cols=11 Identities=27% Similarity=0.631 Sum_probs=8.6
Q ss_pred CCCCccCCCCC
Q 038203 51 EDRPVKCPMPS 61 (155)
Q Consensus 51 ~DrPVkCP~Pe 61 (155)
.+||++|+.=.
T Consensus 8 geKPy~C~~C~ 18 (37)
T d1p7aa_ 8 GIKPFQCPDCD 18 (37)
T ss_dssp CSSSBCCTTTC
T ss_pred CccCeEeCCCC
Confidence 47999998754
No 10
>d1ncsa_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=14.51 E-value=23 Score=20.53 Aligned_cols=13 Identities=23% Similarity=0.662 Sum_probs=10.3
Q ss_pred CCCCCCccCCCCC
Q 038203 49 QDEDRPVKCPMPS 61 (155)
Q Consensus 49 ~d~DrPVkCP~Pe 61 (155)
...++|++|+.|.
T Consensus 13 h~gekpy~C~~~~ 25 (47)
T d1ncsa_ 13 EMPDKTFECLFPG 25 (47)
T ss_dssp EETTTEEECCCTT
T ss_pred ccCCCCeECCcCC
Confidence 3567999999876
Done!