Query 038204
Match_columns 254
No_of_seqs 298 out of 1714
Neff 9.3
Searched_HMMs 46136
Date Fri Mar 29 08:39:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038204.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/038204hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03210 Resistant to P. syrin 99.6 1.3E-14 2.9E-19 143.8 10.2 119 7-143 602-720 (1153)
2 PLN03210 Resistant to P. syrin 99.5 1.4E-13 3E-18 136.6 10.0 164 15-202 631-843 (1153)
3 PLN00113 leucine-rich repeat r 99.0 5.8E-10 1.3E-14 109.6 8.6 21 182-202 282-302 (968)
4 PLN00113 leucine-rich repeat r 98.9 4.3E-09 9.2E-14 103.5 9.0 172 8-203 395-590 (968)
5 KOG3207 Beta-tubulin folding c 98.6 7.9E-09 1.7E-13 89.6 0.2 115 73-191 219-333 (505)
6 KOG0617 Ras suppressor protein 98.5 9.9E-09 2.2E-13 78.9 -2.9 43 5-55 44-86 (264)
7 KOG4194 Membrane glycoprotein 98.4 7.3E-08 1.6E-12 86.6 1.2 144 46-202 291-434 (873)
8 PRK15386 type III secretion pr 98.4 1.5E-06 3.3E-11 76.4 9.0 72 15-109 49-120 (426)
9 KOG0444 Cytoskeletal regulator 98.4 1.8E-08 3.8E-13 91.3 -3.3 167 9-202 214-380 (1255)
10 PRK15370 E3 ubiquitin-protein 98.4 1.5E-06 3.2E-11 82.7 8.8 39 158-202 325-363 (754)
11 PRK15387 E3 ubiquitin-protein 98.2 3.3E-06 7.1E-11 80.3 8.1 98 8-137 215-312 (788)
12 KOG3207 Beta-tubulin folding c 98.2 1.3E-07 2.7E-12 82.3 -1.2 114 16-138 119-233 (505)
13 KOG4658 Apoptotic ATPase [Sign 98.2 9.6E-07 2.1E-11 85.3 4.6 178 7-202 560-788 (889)
14 KOG4341 F-box protein containi 98.2 1.1E-08 2.3E-13 88.3 -7.8 115 19-140 139-255 (483)
15 KOG4658 Apoptotic ATPase [Sign 98.2 8.7E-07 1.9E-11 85.6 4.0 101 100-205 746-850 (889)
16 PRK15386 type III secretion pr 98.2 7.4E-06 1.6E-10 72.1 9.1 72 46-136 50-121 (426)
17 KOG1947 Leucine rich repeat pr 98.2 4.5E-08 9.8E-13 88.5 -5.0 120 16-140 186-308 (482)
18 KOG4341 F-box protein containi 98.2 1.9E-08 4.1E-13 86.8 -6.9 171 13-195 159-357 (483)
19 KOG0617 Ras suppressor protein 98.1 6.9E-08 1.5E-12 74.4 -5.0 162 16-204 31-192 (264)
20 KOG2120 SCF ubiquitin ligase, 98.1 1.1E-07 2.4E-12 79.1 -4.4 140 46-194 232-373 (419)
21 PRK15370 E3 ubiquitin-protein 98.1 5.5E-06 1.2E-10 78.9 6.2 26 7-35 212-237 (754)
22 PF13855 LRR_8: Leucine rich r 98.1 7.6E-06 1.7E-10 52.6 5.1 59 76-137 1-59 (61)
23 PRK15387 E3 ubiquitin-protein 98.0 2E-05 4.4E-10 75.0 7.6 32 17-58 241-272 (788)
24 KOG0444 Cytoskeletal regulator 97.9 6.3E-07 1.4E-11 81.5 -3.2 181 4-203 136-334 (1255)
25 PF13855 LRR_8: Leucine rich r 97.9 2.8E-05 6E-10 49.9 5.4 37 74-111 23-59 (61)
26 cd00116 LRR_RI Leucine-rich re 97.9 9.6E-07 2.1E-11 75.7 -2.6 11 184-194 250-260 (319)
27 PF14580 LRR_9: Leucine-rich r 97.9 1.1E-05 2.4E-10 63.2 3.5 14 156-169 111-124 (175)
28 KOG4194 Membrane glycoprotein 97.8 2.9E-05 6.4E-10 70.3 5.6 180 4-193 88-302 (873)
29 cd00116 LRR_RI Leucine-rich re 97.7 3E-06 6.4E-11 72.6 -2.1 89 101-195 137-232 (319)
30 KOG2120 SCF ubiquitin ligase, 97.6 3.6E-06 7.8E-11 70.3 -3.2 138 17-168 233-373 (419)
31 PF14580 LRR_9: Leucine-rich r 97.5 9.7E-05 2.1E-09 58.0 3.5 81 47-137 18-98 (175)
32 KOG3665 ZYG-1-like serine/thre 97.5 1.7E-05 3.6E-10 75.0 -1.5 86 47-138 121-206 (699)
33 KOG1947 Leucine rich repeat pr 97.4 1.2E-05 2.7E-10 72.6 -2.9 139 46-191 186-328 (482)
34 KOG3665 ZYG-1-like serine/thre 97.3 4.2E-05 9.2E-10 72.3 -0.6 136 17-166 121-258 (699)
35 KOG0618 Serine/threonine phosp 97.2 5.4E-05 1.2E-09 71.8 -0.9 184 5-197 252-489 (1081)
36 KOG0618 Serine/threonine phosp 97.0 0.00015 3.2E-09 68.9 -0.5 130 17-170 358-488 (1081)
37 KOG0472 Leucine-rich repeat pr 96.8 3E-05 6.4E-10 67.3 -6.1 104 75-195 205-308 (565)
38 KOG0472 Leucine-rich repeat pr 96.7 0.00041 8.9E-09 60.5 -0.2 118 5-138 422-539 (565)
39 PLN03150 hypothetical protein; 96.5 0.0053 1.2E-07 57.9 5.9 64 72-138 438-501 (623)
40 KOG3864 Uncharacterized conser 96.4 0.00034 7.3E-09 55.5 -2.2 69 71-140 120-189 (221)
41 PF12799 LRR_4: Leucine Rich r 96.4 0.004 8.6E-08 37.0 2.9 33 77-111 2-34 (44)
42 KOG3864 Uncharacterized conser 96.2 0.00039 8.4E-09 55.1 -2.8 68 99-172 123-190 (221)
43 PF12799 LRR_4: Leucine Rich r 96.0 0.0043 9.2E-08 36.9 1.7 34 18-58 1-34 (44)
44 PLN03150 hypothetical protein; 95.9 0.015 3.3E-07 54.9 6.0 113 78-201 420-532 (623)
45 KOG4237 Extracellular matrix p 95.9 0.00068 1.5E-08 58.9 -2.8 56 4-65 77-132 (498)
46 COG4886 Leucine-rich repeat (L 95.6 0.0079 1.7E-07 53.3 2.7 158 16-194 114-287 (394)
47 KOG1259 Nischarin, modulator o 95.6 0.003 6.4E-08 53.3 -0.1 128 17-169 283-410 (490)
48 PF13306 LRR_5: Leucine rich r 95.5 0.11 2.5E-06 37.8 8.0 88 8-109 2-89 (129)
49 KOG1259 Nischarin, modulator o 95.5 0.0021 4.5E-08 54.2 -1.6 130 45-195 281-410 (490)
50 KOG2982 Uncharacterized conser 95.0 0.015 3.3E-07 49.1 2.3 95 102-203 174-268 (418)
51 KOG4237 Extracellular matrix p 94.8 0.021 4.5E-07 50.0 2.4 94 6-110 262-355 (498)
52 PF13504 LRR_7: Leucine rich r 94.5 0.026 5.6E-07 26.2 1.4 17 184-201 1-17 (17)
53 COG4886 Leucine-rich repeat (L 94.3 0.036 7.7E-07 49.1 3.0 89 46-145 114-203 (394)
54 KOG2123 Uncharacterized conser 94.3 0.0028 6E-08 52.9 -3.7 62 74-139 39-100 (388)
55 KOG2739 Leucine-rich acidic nu 92.8 0.044 9.4E-07 45.3 0.9 12 100-111 115-126 (260)
56 KOG1644 U2-associated snRNP A' 92.4 0.25 5.3E-06 39.6 4.5 90 73-168 61-150 (233)
57 KOG0532 Leucine-rich repeat (L 92.3 0.02 4.3E-07 52.3 -1.9 162 4-194 108-270 (722)
58 KOG1909 Ran GTPase-activating 92.0 0.029 6.2E-07 48.3 -1.1 39 16-58 90-130 (382)
59 smart00367 LRR_CC Leucine-rich 91.5 0.12 2.6E-06 26.7 1.3 17 183-199 1-17 (26)
60 KOG2739 Leucine-rich acidic nu 91.4 0.09 2E-06 43.4 1.2 118 72-199 39-158 (260)
61 smart00367 LRR_CC Leucine-rich 91.0 0.12 2.6E-06 26.7 1.0 18 100-117 1-18 (26)
62 KOG0531 Protein phosphatase 1, 90.5 0.1 2.2E-06 46.7 0.8 106 15-138 92-197 (414)
63 PF00560 LRR_1: Leucine Rich R 90.4 0.21 4.6E-06 24.7 1.5 14 78-92 2-15 (22)
64 PF13306 LRR_5: Leucine rich r 90.0 2.1 4.5E-05 31.0 7.4 79 46-134 10-88 (129)
65 KOG1644 U2-associated snRNP A' 90.0 0.66 1.4E-05 37.2 4.8 89 97-194 60-150 (233)
66 KOG1859 Leucine-rich repeat pr 89.6 0.017 3.7E-07 54.3 -5.0 107 15-138 184-290 (1096)
67 KOG2982 Uncharacterized conser 86.3 0.14 3.1E-06 43.4 -1.1 141 46-195 69-210 (418)
68 KOG0532 Leucine-rich repeat (L 85.8 0.19 4E-06 46.3 -0.7 32 19-57 144-175 (722)
69 KOG2123 Uncharacterized conser 85.6 0.093 2E-06 44.1 -2.5 102 17-133 18-123 (388)
70 KOG1859 Leucine-rich repeat pr 82.9 0.025 5.4E-07 53.3 -7.6 35 99-137 185-219 (1096)
71 smart00369 LRR_TYP Leucine-ric 78.0 1.1 2.4E-05 22.8 0.8 19 17-35 1-19 (26)
72 smart00370 LRR Leucine-rich re 78.0 1.1 2.4E-05 22.8 0.8 19 17-35 1-19 (26)
73 KOG1909 Ran GTPase-activating 76.0 0.24 5.1E-06 42.8 -3.3 13 182-194 239-251 (382)
74 KOG0531 Protein phosphatase 1, 61.2 3.6 7.9E-05 36.8 0.8 82 14-111 114-196 (414)
75 PF13516 LRR_6: Leucine Rich r 57.2 7.1 0.00015 19.3 1.2 12 101-112 2-13 (24)
76 KOG4579 Leucine-rich repeat (L 53.8 2.4 5.2E-05 32.1 -1.3 82 15-109 50-131 (177)
77 smart00365 LRR_SD22 Leucine-ri 50.8 12 0.00026 19.3 1.4 17 17-33 1-17 (26)
78 smart00364 LRR_BAC Leucine-ric 44.9 10 0.00022 19.6 0.6 18 18-35 2-19 (26)
79 smart00368 LRR_RI Leucine rich 25.4 38 0.00083 17.5 0.8 13 18-30 2-14 (28)
No 1
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.56 E-value=1.3e-14 Score=143.79 Aligned_cols=119 Identities=24% Similarity=0.380 Sum_probs=86.0
Q ss_pred ceechHHHhhCCCCcEEEEecccceEecCCCCccccccCCCCcccEEeccCCcccccccccCCccccCCCCccEEEEecC
Q 038204 7 ACFPLGLLEKFRNLEILYLSRTSYTEILSNEGHSEKHVGKFSQVKHLQPYKLNDLKQLWKQGSKLDFIFTNLEILRVYCC 86 (254)
Q Consensus 7 ~~~P~~~~~~l~~L~~L~l~~c~l~~l~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~l~~~~~~~~~~~~~L~~L~l~~C 86 (254)
..+|+++ ...+|+.|++.++.++.++. .+..+++|+.|+++++..++.+.. ...+++|++|++.+|
T Consensus 602 ~~lP~~f--~~~~L~~L~L~~s~l~~L~~-------~~~~l~~Lk~L~Ls~~~~l~~ip~-----ls~l~~Le~L~L~~c 667 (1153)
T PLN03210 602 RCMPSNF--RPENLVKLQMQGSKLEKLWD-------GVHSLTGLRNIDLRGSKNLKEIPD-----LSMATNLETLKLSDC 667 (1153)
T ss_pred CCCCCcC--CccCCcEEECcCcccccccc-------ccccCCCCCEEECCCCCCcCcCCc-----cccCCcccEEEecCC
Confidence 3445544 35677777777776666654 234588888888888877766532 445788899999988
Q ss_pred CCcceecCCcccccccccEEEeeccccccccccchhhccccccceeEEecCCCceeE
Q 038204 87 QNLIVLLPSSSVSFRNLTDLQVWGCKELMKLVTSSTAKSLVRLRIMKVCGSRAMTQV 143 (254)
Q Consensus 87 ~~L~~l~p~~~~~~~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~C~~l~~i 143 (254)
..+..+ |..+..+++|+.|++++|.+++.++.. .++++|+.|.+++|..++.+
T Consensus 668 ~~L~~l-p~si~~L~~L~~L~L~~c~~L~~Lp~~---i~l~sL~~L~Lsgc~~L~~~ 720 (1153)
T PLN03210 668 SSLVEL-PSSIQYLNKLEDLDMSRCENLEILPTG---INLKSLYRLNLSGCSRLKSF 720 (1153)
T ss_pred CCcccc-chhhhccCCCCEEeCCCCCCcCccCCc---CCCCCCCEEeCCCCCCcccc
Confidence 888888 555788888888888888888877542 26778888888888766544
No 2
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.47 E-value=1.4e-13 Score=136.59 Aligned_cols=164 Identities=20% Similarity=0.321 Sum_probs=106.8
Q ss_pred hhCCCCcEEEEecc-cceEecCCCCccccccCCCCcccEEeccCCcccccccccCCccccCCCCccEEEEecCCCcceec
Q 038204 15 EKFRNLEILYLSRT-SYTEILSNEGHSEKHVGKFSQVKHLQPYKLNDLKQLWKQGSKLDFIFTNLEILRVYCCQNLIVLL 93 (254)
Q Consensus 15 ~~l~~L~~L~l~~c-~l~~l~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~l~~~~~~~~~~~~~L~~L~l~~C~~L~~l~ 93 (254)
..+++|+.|++++| .++.++. ++.+++|++|.|.+|..+..+.. ....+++|+.|++.+|.+++.+
T Consensus 631 ~~l~~Lk~L~Ls~~~~l~~ip~--------ls~l~~Le~L~L~~c~~L~~lp~----si~~L~~L~~L~L~~c~~L~~L- 697 (1153)
T PLN03210 631 HSLTGLRNIDLRGSKNLKEIPD--------LSMATNLETLKLSDCSSLVELPS----SIQYLNKLEDLDMSRCENLEIL- 697 (1153)
T ss_pred ccCCCCCEEECCCCCCcCcCCc--------cccCCcccEEEecCCCCccccch----hhhccCCCCEEeCCCCCCcCcc-
Confidence 46788888888888 6766654 44577888888888877766533 2456777888888888877777
Q ss_pred CCcccccccccEEEeeccccccccccch-----------------hhcc-------------------------------
Q 038204 94 PSSSVSFRNLTDLQVWGCKELMKLVTSS-----------------TAKS------------------------------- 125 (254)
Q Consensus 94 p~~~~~~~~L~~L~i~~C~~L~~l~~~~-----------------~~~~------------------------------- 125 (254)
|. ..++++|+.|.+++|..++.++... ....
T Consensus 698 p~-~i~l~sL~~L~Lsgc~~L~~~p~~~~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~ 776 (1153)
T PLN03210 698 PT-GINLKSLYRLNLSGCSRLKSFPDISTNISWLDLDETAIEEFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTML 776 (1153)
T ss_pred CC-cCCCCCCCEEeCCCCCCccccccccCCcCeeecCCCccccccccccccccccccccccchhhccccccccchhhhhc
Confidence 44 2367777777777777665443100 0001
Q ss_pred ccccceeEEecCCCceeEeecCCCCccccccccccceeecccccccceecCCCccccCCCcCeEEEeCCCCCcccCC
Q 038204 126 LVRLRIMKVCGSRAMTQVVTSEKDGAEDEIVFSNLKALTLLDLDSLTSFCSGNYTFKFPSLRDLEVIGCPKMKIFTT 202 (254)
Q Consensus 126 l~~L~~L~i~~C~~l~~i~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~~sL~~L~i~~Cp~L~~lp~ 202 (254)
.++|+.|++++|+.+.+++. ....+++|+.|++.+|++++.++.+. .+++|+.|++++|.+++.+|.
T Consensus 777 ~~sL~~L~Ls~n~~l~~lP~-------si~~L~~L~~L~Ls~C~~L~~LP~~~---~L~sL~~L~Ls~c~~L~~~p~ 843 (1153)
T PLN03210 777 SPSLTRLFLSDIPSLVELPS-------SIQNLHKLEHLEIENCINLETLPTGI---NLESLESLDLSGCSRLRTFPD 843 (1153)
T ss_pred cccchheeCCCCCCccccCh-------hhhCCCCCCEEECCCCCCcCeeCCCC---CccccCEEECCCCCccccccc
Confidence 12344444444444333332 33457788888888888888877643 577888888888888877764
No 3
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.04 E-value=5.8e-10 Score=109.57 Aligned_cols=21 Identities=10% Similarity=0.053 Sum_probs=11.7
Q ss_pred cCCCcCeEEEeCCCCCcccCC
Q 038204 182 KFPSLRDLEVIGCPKMKIFTT 202 (254)
Q Consensus 182 ~~~sL~~L~i~~Cp~L~~lp~ 202 (254)
.+++|++|++++|.-...+|.
T Consensus 282 ~l~~L~~L~Ls~n~l~~~~p~ 302 (968)
T PLN00113 282 SLQKLISLDLSDNSLSGEIPE 302 (968)
T ss_pred hccCcCEEECcCCeeccCCCh
Confidence 455666666666643334444
No 4
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=98.91 E-value=4.3e-09 Score=103.52 Aligned_cols=172 Identities=17% Similarity=0.072 Sum_probs=97.9
Q ss_pred eechHHHhhCCCCcEEEEecccceEecCCCCccccccCCCCcccEEec------------------------cCCccccc
Q 038204 8 CFPLGLLEKFRNLEILYLSRTSYTEILSNEGHSEKHVGKFSQVKHLQP------------------------YKLNDLKQ 63 (254)
Q Consensus 8 ~~P~~~~~~l~~L~~L~l~~c~l~~l~~~~~~~~~~~~~~~~L~~L~L------------------------~~~~~L~~ 63 (254)
.+|.++ ..+++|+.|++++|.+....+. ....+++|+.|++ .++.-...
T Consensus 395 ~~p~~~-~~~~~L~~L~L~~n~l~~~~p~------~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~ 467 (968)
T PLN00113 395 EIPKSL-GACRSLRRVRLQDNSFSGELPS------EFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGG 467 (968)
T ss_pred cCCHHH-hCCCCCCEEECcCCEeeeECCh------hHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeee
Confidence 455554 5788888888888865543321 1223444555554 44432211
Q ss_pred ccccCCccccCCCCccEEEEecCCCcceecCCcccccccccEEEeeccccccccccchhhccccccceeEEecCCCceeE
Q 038204 64 LWKQGSKLDFIFTNLEILRVYCCQNLIVLLPSSSVSFRNLTDLQVWGCKELMKLVTSSTAKSLVRLRIMKVCGSRAMTQV 143 (254)
Q Consensus 64 l~~~~~~~~~~~~~L~~L~l~~C~~L~~l~p~~~~~~~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~C~~l~~i 143 (254)
+.. ....++|+.|++++|.-.... |..+..+++|+.|++++|.-...++ ....++++|++|++++|.-...+
T Consensus 468 ~p~-----~~~~~~L~~L~ls~n~l~~~~-~~~~~~l~~L~~L~Ls~N~l~~~~p--~~~~~l~~L~~L~Ls~N~l~~~~ 539 (968)
T PLN00113 468 LPD-----SFGSKRLENLDLSRNQFSGAV-PRKLGSLSELMQLKLSENKLSGEIP--DELSSCKKLVSLDLSHNQLSGQI 539 (968)
T ss_pred cCc-----ccccccceEEECcCCccCCcc-ChhhhhhhccCEEECcCCcceeeCC--hHHcCccCCCEEECCCCcccccC
Confidence 110 112345666666655332222 4445566677777777664332332 23456677777777777532222
Q ss_pred eecCCCCccccccccccceeecccccccceecCCCccccCCCcCeEEEeCCCCCcccCCC
Q 038204 144 VTSEKDGAEDEIVFSNLKALTLLDLDSLTSFCSGNYTFKFPSLRDLEVIGCPKMKIFTTG 203 (254)
Q Consensus 144 ~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~~sL~~L~i~~Cp~L~~lp~~ 203 (254)
+. ....+++|+.|++.++.-...++.. ...+++|+.|++++|+-...+|..
T Consensus 540 p~-------~~~~l~~L~~L~Ls~N~l~~~~p~~--l~~l~~L~~l~ls~N~l~~~~p~~ 590 (968)
T PLN00113 540 PA-------SFSEMPVLSQLDLSQNQLSGEIPKN--LGNVESLVQVNISHNHLHGSLPST 590 (968)
T ss_pred Ch-------hHhCcccCCEEECCCCcccccCChh--HhcCcccCEEeccCCcceeeCCCc
Confidence 22 3345788999999888554455543 246788999999999877677754
No 5
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.61 E-value=7.9e-09 Score=89.57 Aligned_cols=115 Identities=15% Similarity=0.284 Sum_probs=66.3
Q ss_pred cCCCCccEEEEecCCCcceecCCcccccccccEEEeeccccccccccchhhccccccceeEEecCCCceeEeecCCCCcc
Q 038204 73 FIFTNLEILRVYCCQNLIVLLPSSSVSFRNLTDLQVWGCKELMKLVTSSTAKSLVRLRIMKVCGSRAMTQVVTSEKDGAE 152 (254)
Q Consensus 73 ~~~~~L~~L~l~~C~~L~~l~p~~~~~~~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~C~~l~~i~~~~~~~~~ 152 (254)
..||+|+.|.+.+...+..... ....++.|+.|++++-+ +.+.......+.+|.|+.|.++.|. +.++-..+.+...
T Consensus 219 ~~fPsl~~L~L~~N~~~~~~~~-~~~i~~~L~~LdLs~N~-li~~~~~~~~~~l~~L~~Lnls~tg-i~si~~~d~~s~~ 295 (505)
T KOG3207|consen 219 LTFPSLEVLYLEANEIILIKAT-STKILQTLQELDLSNNN-LIDFDQGYKVGTLPGLNQLNLSSTG-IASIAEPDVESLD 295 (505)
T ss_pred HhCCcHHHhhhhcccccceecc-hhhhhhHHhhccccCCc-ccccccccccccccchhhhhccccC-cchhcCCCccchh
Confidence 3455555555554432211111 12346677888887764 3355545567788888888888885 5555433332223
Q ss_pred ccccccccceeecccccccceecCCCccccCCCcCeEEE
Q 038204 153 DEIVFSNLKALTLLDLDSLTSFCSGNYTFKFPSLRDLEV 191 (254)
Q Consensus 153 ~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~~sL~~L~i 191 (254)
....||+|+.|.+..- ++.+|+.-.....+++|++|.+
T Consensus 296 kt~~f~kL~~L~i~~N-~I~~w~sl~~l~~l~nlk~l~~ 333 (505)
T KOG3207|consen 296 KTHTFPKLEYLNISEN-NIRDWRSLNHLRTLENLKHLRI 333 (505)
T ss_pred hhcccccceeeecccC-ccccccccchhhccchhhhhhc
Confidence 4557899999988754 5555554444455666776654
No 6
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=98.45 E-value=9.9e-09 Score=78.95 Aligned_cols=43 Identities=21% Similarity=0.419 Sum_probs=20.5
Q ss_pred CCceechHHHhhCCCCcEEEEecccceEecCCCCccccccCCCCcccEEec
Q 038204 5 DSACFPLGLLEKFRNLEILYLSRTSYTEILSNEGHSEKHVGKFSQVKHLQP 55 (254)
Q Consensus 5 ~~~~~P~~~~~~l~~L~~L~l~~c~l~~l~~~~~~~~~~~~~~~~L~~L~L 55 (254)
.-...|+.++ .+.+|+.|++.++++++++. .++.+|+|+.|++
T Consensus 44 Kl~~vppnia-~l~nlevln~~nnqie~lp~-------~issl~klr~lnv 86 (264)
T KOG0617|consen 44 KLTVVPPNIA-ELKNLEVLNLSNNQIEELPT-------SISSLPKLRILNV 86 (264)
T ss_pred ceeecCCcHH-HhhhhhhhhcccchhhhcCh-------hhhhchhhhheec
Confidence 3344444443 45555555555555555444 2334555555544
No 7
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=98.42 E-value=7.3e-08 Score=86.62 Aligned_cols=144 Identities=13% Similarity=0.091 Sum_probs=92.9
Q ss_pred CCCcccEEeccCCcccccccccCCccccCCCCccEEEEecCCCcceecCCcccccccccEEEeeccccccccccchhhcc
Q 038204 46 KFSQVKHLQPYKLNDLKQLWKQGSKLDFIFTNLEILRVYCCQNLIVLLPSSSVSFRNLTDLQVWGCKELMKLVTSSTAKS 125 (254)
Q Consensus 46 ~~~~L~~L~L~~~~~L~~l~~~~~~~~~~~~~L~~L~l~~C~~L~~l~p~~~~~~~~L~~L~i~~C~~L~~l~~~~~~~~ 125 (254)
++.+|+.|+++.- .++.+. ......+++|+.|++++ ++++.+.+..+..+..|+.|.++.. ++.++.. ....+
T Consensus 291 gLt~L~~L~lS~N-aI~rih---~d~WsftqkL~~LdLs~-N~i~~l~~~sf~~L~~Le~LnLs~N-si~~l~e-~af~~ 363 (873)
T KOG4194|consen 291 GLTSLEQLDLSYN-AIQRIH---IDSWSFTQKLKELDLSS-NRITRLDEGSFRVLSQLEELNLSHN-SIDHLAE-GAFVG 363 (873)
T ss_pred ccchhhhhccchh-hhheee---cchhhhcccceeEeccc-cccccCChhHHHHHHHhhhhccccc-chHHHHh-hHHHH
Confidence 4566666666542 334431 22355677788888776 4566665555666777777777654 3444422 23556
Q ss_pred ccccceeEEecCCCceeEeecCCCCccccccccccceeecccccccceecCCCccccCCCcCeEEEeCCCCCcccCC
Q 038204 126 LVRLRIMKVCGSRAMTQVVTSEKDGAEDEIVFSNLKALTLLDLDSLTSFCSGNYTFKFPSLRDLEVIGCPKMKIFTT 202 (254)
Q Consensus 126 l~~L~~L~i~~C~~l~~i~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~~sL~~L~i~~Cp~L~~lp~ 202 (254)
+.+|++|++++.. +...+.+ .+.....+++|++|.+.+- ++++++..+ ...+++|++|++.+-+-...=|.
T Consensus 364 lssL~~LdLr~N~-ls~~IED---aa~~f~gl~~LrkL~l~gN-qlk~I~krA-fsgl~~LE~LdL~~NaiaSIq~n 434 (873)
T KOG4194|consen 364 LSSLHKLDLRSNE-LSWCIED---AAVAFNGLPSLRKLRLTGN-QLKSIPKRA-FSGLEALEHLDLGDNAIASIQPN 434 (873)
T ss_pred hhhhhhhcCcCCe-EEEEEec---chhhhccchhhhheeecCc-eeeecchhh-hccCcccceecCCCCcceeeccc
Confidence 7888888888764 4444432 2234456899999999985 899998764 35789999999988875443333
No 8
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.40 E-value=1.5e-06 Score=76.41 Aligned_cols=72 Identities=22% Similarity=0.285 Sum_probs=53.2
Q ss_pred hhCCCCcEEEEecccceEecCCCCccccccCCCCcccEEeccCCcccccccccCCccccCCCCccEEEEecCCCcceecC
Q 038204 15 EKFRNLEILYLSRTSYTEILSNEGHSEKHVGKFSQVKHLQPYKLNDLKQLWKQGSKLDFIFTNLEILRVYCCQNLIVLLP 94 (254)
Q Consensus 15 ~~l~~L~~L~l~~c~l~~l~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~l~~~~~~~~~~~~~L~~L~l~~C~~L~~l~p 94 (254)
..+.+++.|+|++|.++.++. + .++|++|.+.+|.+++.+.. ...++|++|.|.+|.++..+ |
T Consensus 49 ~~~~~l~~L~Is~c~L~sLP~--------L--P~sLtsL~Lsnc~nLtsLP~------~LP~nLe~L~Ls~Cs~L~sL-P 111 (426)
T PRK15386 49 EEARASGRLYIKDCDIESLPV--------L--PNELTEITIENCNNLTTLPG------SIPEGLEKLTVCHCPEISGL-P 111 (426)
T ss_pred HHhcCCCEEEeCCCCCcccCC--------C--CCCCcEEEccCCCCcccCCc------hhhhhhhheEccCccccccc-c
Confidence 347899999999998887764 1 34699999999999877632 12468999999999888776 4
Q ss_pred CcccccccccEEEee
Q 038204 95 SSSVSFRNLTDLQVW 109 (254)
Q Consensus 95 ~~~~~~~~L~~L~i~ 109 (254)
. +|+.|++.
T Consensus 112 ~------sLe~L~L~ 120 (426)
T PRK15386 112 E------SVRSLEIK 120 (426)
T ss_pred c------ccceEEeC
Confidence 3 35555554
No 9
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=98.39 E-value=1.8e-08 Score=91.31 Aligned_cols=167 Identities=20% Similarity=0.235 Sum_probs=113.7
Q ss_pred echHHHhhCCCCcEEEEecccceEecCCCCccccccCCCCcccEEeccCCcccccccccCCccccCCCCccEEEEecCCC
Q 038204 9 FPLGLLEKFRNLEILYLSRTSYTEILSNEGHSEKHVGKFSQVKHLQPYKLNDLKQLWKQGSKLDFIFTNLEILRVYCCQN 88 (254)
Q Consensus 9 ~P~~~~~~l~~L~~L~l~~c~l~~l~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~l~~~~~~~~~~~~~L~~L~l~~C~~ 88 (254)
||.++ ..|.||..++++.+++..+|+ .+-.+++|+.|+|++. +++.+- .......+|++|+++. ++
T Consensus 214 ~Ptsl-d~l~NL~dvDlS~N~Lp~vPe-------cly~l~~LrrLNLS~N-~iteL~----~~~~~W~~lEtLNlSr-NQ 279 (1255)
T KOG0444|consen 214 IPTSL-DDLHNLRDVDLSENNLPIVPE-------CLYKLRNLRRLNLSGN-KITELN----MTEGEWENLETLNLSR-NQ 279 (1255)
T ss_pred CCCch-hhhhhhhhccccccCCCcchH-------HHhhhhhhheeccCcC-ceeeee----ccHHHHhhhhhhcccc-ch
Confidence 45553 456666666666666555554 1335778888888763 444431 1245567888888887 46
Q ss_pred cceecCCcccccccccEEEeeccccccccccchhhccccccceeEEecCCCceeEeecCCCCccccccccccceeecccc
Q 038204 89 LIVLLPSSSVSFRNLTDLQVWGCKELMKLVTSSTAKSLVRLRIMKVCGSRAMTQVVTSEKDGAEDEIVFSNLKALTLLDL 168 (254)
Q Consensus 89 L~~l~p~~~~~~~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~C~~l~~i~~~~~~~~~~~~~~~~L~~L~l~~c 168 (254)
|+.+ |..+..+++|+.|.+.+. +|..-..++..+.+.+|+.+...+. .++-++. ....+++|+.|.+. |
T Consensus 280 Lt~L-P~avcKL~kL~kLy~n~N-kL~FeGiPSGIGKL~~Levf~aanN-~LElVPE-------glcRC~kL~kL~L~-~ 348 (1255)
T KOG0444|consen 280 LTVL-PDAVCKLTKLTKLYANNN-KLTFEGIPSGIGKLIQLEVFHAANN-KLELVPE-------GLCRCVKLQKLKLD-H 348 (1255)
T ss_pred hccc-hHHHhhhHHHHHHHhccC-cccccCCccchhhhhhhHHHHhhcc-ccccCch-------hhhhhHHHHHhccc-c
Confidence 7777 666778888888887654 4544444556777888888877665 3555544 55678899999987 5
Q ss_pred cccceecCCCccccCCCcCeEEEeCCCCCcccCC
Q 038204 169 DSLTSFCSGNYTFKFPSLRDLEVIGCPKMKIFTT 202 (254)
Q Consensus 169 ~~L~~~~~~~~~~~~~sL~~L~i~~Cp~L~~lp~ 202 (254)
..|..+|.+. .-+|-|+.|++++.|+|..-|.
T Consensus 349 NrLiTLPeaI--HlL~~l~vLDlreNpnLVMPPK 380 (1255)
T KOG0444|consen 349 NRLITLPEAI--HLLPDLKVLDLRENPNLVMPPK 380 (1255)
T ss_pred cceeechhhh--hhcCCcceeeccCCcCccCCCC
Confidence 6788888754 4568899999999999886554
No 10
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=98.37 E-value=1.5e-06 Score=82.68 Aligned_cols=39 Identities=26% Similarity=0.308 Sum_probs=21.2
Q ss_pred cccceeecccccccceecCCCccccCCCcCeEEEeCCCCCcccCC
Q 038204 158 SNLKALTLLDLDSLTSFCSGNYTFKFPSLRDLEVIGCPKMKIFTT 202 (254)
Q Consensus 158 ~~L~~L~l~~c~~L~~~~~~~~~~~~~sL~~L~i~~Cp~L~~lp~ 202 (254)
++|+.|.+.++ +++.++.. -.++|+.|++++| +++.+|.
T Consensus 325 ~sL~~L~Ls~N-~Lt~LP~~----l~~sL~~L~Ls~N-~L~~LP~ 363 (754)
T PRK15370 325 PGLKTLEAGEN-ALTSLPAS----LPPELQVLDVSKN-QITVLPE 363 (754)
T ss_pred ccceeccccCC-ccccCChh----hcCcccEEECCCC-CCCcCCh
Confidence 45666666655 45554432 1245666666666 3555554
No 11
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=98.25 E-value=3.3e-06 Score=80.31 Aligned_cols=98 Identities=19% Similarity=0.215 Sum_probs=52.9
Q ss_pred eechHHHhhCCCCcEEEEecccceEecCCCCccccccCCCCcccEEeccCCcccccccccCCccccCCCCccEEEEecCC
Q 038204 8 CFPLGLLEKFRNLEILYLSRTSYTEILSNEGHSEKHVGKFSQVKHLQPYKLNDLKQLWKQGSKLDFIFTNLEILRVYCCQ 87 (254)
Q Consensus 8 ~~P~~~~~~l~~L~~L~l~~c~l~~l~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~l~~~~~~~~~~~~~L~~L~l~~C~ 87 (254)
.+|..+. ++|+.|++.+++++.++. ..++|++|+++++ +++.++. .+++|+.|++.++
T Consensus 215 sLP~~l~---~~L~~L~L~~N~Lt~LP~----------lp~~Lk~LdLs~N-~LtsLP~-------lp~sL~~L~Ls~N- 272 (788)
T PRK15387 215 TLPDCLP---AHITTLVIPDNNLTSLPA----------LPPELRTLEVSGN-QLTSLPV-------LPPGLLELSIFSN- 272 (788)
T ss_pred cCCcchh---cCCCEEEccCCcCCCCCC----------CCCCCcEEEecCC-ccCcccC-------cccccceeeccCC-
Confidence 3555443 367777777776665543 1567778877664 5555421 2356666666665
Q ss_pred CcceecCCcccccccccEEEeeccccccccccchhhccccccceeEEecC
Q 038204 88 NLIVLLPSSSVSFRNLTDLQVWGCKELMKLVTSSTAKSLVRLRIMKVCGS 137 (254)
Q Consensus 88 ~L~~l~p~~~~~~~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~C 137 (254)
.+..+ |. .+.+|+.|++.++ +++.++. ..++|+.|+++++
T Consensus 273 ~L~~L-p~---lp~~L~~L~Ls~N-~Lt~LP~-----~p~~L~~LdLS~N 312 (788)
T PRK15387 273 PLTHL-PA---LPSGLCKLWIFGN-QLTSLPV-----LPPGLQELSVSDN 312 (788)
T ss_pred chhhh-hh---chhhcCEEECcCC-ccccccc-----cccccceeECCCC
Confidence 24444 22 2345555555554 3444321 2345566666554
No 12
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.25 E-value=1.3e-07 Score=82.26 Aligned_cols=114 Identities=14% Similarity=0.173 Sum_probs=58.9
Q ss_pred hCCCCcEEEEecccceEecCCCCccccccCCCCcccEEeccCCcccccccccCCccccCCCCccEEEEecCCCcceec-C
Q 038204 16 KFRNLEILYLSRTSYTEILSNEGHSEKHVGKFSQVKHLQPYKLNDLKQLWKQGSKLDFIFTNLEILRVYCCQNLIVLL-P 94 (254)
Q Consensus 16 ~l~~L~~L~l~~c~l~~l~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~l~~~~~~~~~~~~~L~~L~l~~C~~L~~l~-p 94 (254)
++++|+...+++|.+...+.. ..+..||+++.|+++. +|-.-|.......+.+|+|+.|.|+... +.... .
T Consensus 119 n~kkL~~IsLdn~~V~~~~~~-----~~~k~~~~v~~LdLS~--NL~~nw~~v~~i~eqLp~Le~LNls~Nr-l~~~~~s 190 (505)
T KOG3207|consen 119 NLKKLREISLDNYRVEDAGIE-----EYSKILPNVRDLDLSR--NLFHNWFPVLKIAEQLPSLENLNLSSNR-LSNFISS 190 (505)
T ss_pred hHHhhhheeecCccccccchh-----hhhhhCCcceeecchh--hhHHhHHHHHHHHHhcccchhccccccc-ccCCccc
Confidence 466777777777765544431 1233477777777754 2222233333334567777777776532 21110 0
Q ss_pred CcccccccccEEEeeccccccccccchhhccccccceeEEecCC
Q 038204 95 SSSVSFRNLTDLQVWGCKELMKLVTSSTAKSLVRLRIMKVCGSR 138 (254)
Q Consensus 95 ~~~~~~~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~C~ 138 (254)
.....++.|+.|.++.|. +..-.-...+..+|+|+.|.+....
T Consensus 191 ~~~~~l~~lK~L~l~~CG-ls~k~V~~~~~~fPsl~~L~L~~N~ 233 (505)
T KOG3207|consen 191 NTTLLLSHLKQLVLNSCG-LSWKDVQWILLTFPSLEVLYLEANE 233 (505)
T ss_pred cchhhhhhhheEEeccCC-CCHHHHHHHHHhCCcHHHhhhhccc
Confidence 012346667777777774 2221112344556666666666653
No 13
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.24 E-value=9.6e-07 Score=85.27 Aligned_cols=178 Identities=18% Similarity=0.180 Sum_probs=98.3
Q ss_pred ceechHHHhhCCCCcEEEEecc-cceEecCCCCccccccCCCCcccEEeccCCcccccccccCCccccCCCCccEEEEec
Q 038204 7 ACFPLGLLEKFRNLEILYLSRT-SYTEILSNEGHSEKHVGKFSQVKHLQPYKLNDLKQLWKQGSKLDFIFTNLEILRVYC 85 (254)
Q Consensus 7 ~~~P~~~~~~l~~L~~L~l~~c-~l~~l~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~l~~~~~~~~~~~~~L~~L~l~~ 85 (254)
...+..++..|+.|+.|++++| .+.++|. .++.+-+||+|++++. .++.++. +...+..|.+|++..
T Consensus 560 ~~is~~ff~~m~~LrVLDLs~~~~l~~LP~-------~I~~Li~LryL~L~~t-~I~~LP~----~l~~Lk~L~~Lnl~~ 627 (889)
T KOG4658|consen 560 LEISGEFFRSLPLLRVLDLSGNSSLSKLPS-------SIGELVHLRYLDLSDT-GISHLPS----GLGNLKKLIYLNLEV 627 (889)
T ss_pred hhcCHHHHhhCcceEEEECCCCCccCcCCh-------HHhhhhhhhcccccCC-Cccccch----HHHHHHhhheecccc
Confidence 3456667788999999999999 8888876 3556777777776553 2333221 133344444444444
Q ss_pred CCCcceecCCcccccccccEEEe--------------------------ecccc--cc---------------------c
Q 038204 86 CQNLIVLLPSSSVSFRNLTDLQV--------------------------WGCKE--LM---------------------K 116 (254)
Q Consensus 86 C~~L~~l~p~~~~~~~~L~~L~i--------------------------~~C~~--L~---------------------~ 116 (254)
...+... |.....+++|++|.+ ..+.. ++ .
T Consensus 628 ~~~l~~~-~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~~~~e~l~~~~~L~~~~~~l~~~~~~~ 706 (889)
T KOG4658|consen 628 TGRLESI-PGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSVLLLEDLLGMTRLRSLLQSLSIEGCSK 706 (889)
T ss_pred ccccccc-cchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecchhHhHhhhhhhHHHHHHhHhhhhccccc
Confidence 4433333 221111333333333 22211 00 0
Q ss_pred cccchhhccccccceeEEecCCCceeEeecCCCCccccc-cccccceeecccccccceecCCCccccCCCcCeEEEeCCC
Q 038204 117 LVTSSTAKSLVRLRIMKVCGSRAMTQVVTSEKDGAEDEI-VFSNLKALTLLDLDSLTSFCSGNYTFKFPSLRDLEVIGCP 195 (254)
Q Consensus 117 l~~~~~~~~l~~L~~L~i~~C~~l~~i~~~~~~~~~~~~-~~~~L~~L~l~~c~~L~~~~~~~~~~~~~sL~~L~i~~Cp 195 (254)
....+....+.+|+.|.|.+|...+....... ..... .|+++..+.+.+|..++..... .-.|+|+.|.+..|+
T Consensus 707 ~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~--~~~~~~~f~~l~~~~~~~~~~~r~l~~~---~f~~~L~~l~l~~~~ 781 (889)
T KOG4658|consen 707 RTLISSLGSLGNLEELSILDCGISEIVIEWEE--SLIVLLCFPNLSKVSILNCHMLRDLTWL---LFAPHLTSLSLVSCR 781 (889)
T ss_pred ceeecccccccCcceEEEEcCCCchhhccccc--ccchhhhHHHHHHHHhhccccccccchh---hccCcccEEEEeccc
Confidence 00112344567777888888875433221111 01112 2677777777788777765543 245789999999998
Q ss_pred CCcccCC
Q 038204 196 KMKIFTT 202 (254)
Q Consensus 196 ~L~~lp~ 202 (254)
.++...+
T Consensus 782 ~~e~~i~ 788 (889)
T KOG4658|consen 782 LLEDIIP 788 (889)
T ss_pred ccccCCC
Confidence 8877544
No 14
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.24 E-value=1.1e-08 Score=88.31 Aligned_cols=115 Identities=14% Similarity=0.151 Sum_probs=64.3
Q ss_pred CCcEEEEecc-cceEecCCCCccccccCCCCcccEEeccCCcccccccccCCccccCCCCccEEEEecCCCcceecCC-c
Q 038204 19 NLEILYLSRT-SYTEILSNEGHSEKHVGKFSQVKHLQPYKLNDLKQLWKQGSKLDFIFTNLEILRVYCCQNLIVLLPS-S 96 (254)
Q Consensus 19 ~L~~L~l~~c-~l~~l~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~l~~~~~~~~~~~~~L~~L~l~~C~~L~~l~p~-~ 96 (254)
-|+.|.++|| .+..-.- ......+|++++|.+.+|.++++. ........+++|+.|.+..|.++++..-. -
T Consensus 139 ~lk~LSlrG~r~v~~ssl-----rt~~~~CpnIehL~l~gc~~iTd~--s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~l 211 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSSL-----RTFASNCPNIEHLALYGCKKITDS--SLLSLARYCRKLRHLNLHSCSSITDVSLKYL 211 (483)
T ss_pred ccccccccccccCCcchh-----hHHhhhCCchhhhhhhcceeccHH--HHHHHHHhcchhhhhhhcccchhHHHHHHHH
Confidence 5677777777 4432111 011234777777777777766553 11122345677777777777777654311 1
Q ss_pred ccccccccEEEeeccccccccccchhhccccccceeEEecCCCc
Q 038204 97 SVSFRNLTDLQVWGCKELMKLVTSSTAKSLVRLRIMKVCGSRAM 140 (254)
Q Consensus 97 ~~~~~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~C~~l 140 (254)
...+++|++|+++.|+.++.-......+++..++.+..++|.++
T Consensus 212 a~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~ 255 (483)
T KOG4341|consen 212 AEGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLEL 255 (483)
T ss_pred HHhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccc
Confidence 34577777777777776665332334455555555555555443
No 15
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.23 E-value=8.7e-07 Score=85.55 Aligned_cols=101 Identities=23% Similarity=0.310 Sum_probs=69.4
Q ss_pred cccccEEEeeccccccccccchhhccccccceeEEecCCCceeEeecCCCCc---ccccccccccee-ecccccccceec
Q 038204 100 FRNLTDLQVWGCKELMKLVTSSTAKSLVRLRIMKVCGSRAMTQVVTSEKDGA---EDEIVFSNLKAL-TLLDLDSLTSFC 175 (254)
Q Consensus 100 ~~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~C~~l~~i~~~~~~~~---~~~~~~~~L~~L-~l~~c~~L~~~~ 175 (254)
|+++..+.+.+|..+++..+ ..-.|+|+.|.+..|..+++++....... .....|.++..+ .+.+.+.++++.
T Consensus 746 f~~l~~~~~~~~~~~r~l~~---~~f~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~~i~~f~~~~~l~~~~~l~~l~~i~ 822 (889)
T KOG4658|consen 746 FPNLSKVSILNCHMLRDLTW---LLFAPHLTSLSLVSCRLLEDIIPKLKALLELKELILPFNKLEGLRMLCSLGGLPQLY 822 (889)
T ss_pred HHHHHHHHhhccccccccch---hhccCcccEEEEecccccccCCCHHHHhhhcccEEecccccccceeeecCCCCceeE
Confidence 33444444444444443322 23457889999999999988876443211 124567888888 588888888877
Q ss_pred CCCccccCCCcCeEEEeCCCCCcccCCCCC
Q 038204 176 SGNYTFKFPSLRDLEVIGCPKMKIFTTGEL 205 (254)
Q Consensus 176 ~~~~~~~~~sL~~L~i~~Cp~L~~lp~~~~ 205 (254)
... ..++.|+.+.|.+||++..+|....
T Consensus 823 ~~~--l~~~~l~~~~ve~~p~l~~~P~~~~ 850 (889)
T KOG4658|consen 823 WLP--LSFLKLEELIVEECPKLGKLPLLST 850 (889)
T ss_pred ecc--cCccchhheehhcCcccccCccccc
Confidence 744 5678899999999999999998754
No 16
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.22 E-value=7.4e-06 Score=72.12 Aligned_cols=72 Identities=25% Similarity=0.340 Sum_probs=54.8
Q ss_pred CCCcccEEeccCCcccccccccCCccccCCCCccEEEEecCCCcceecCCcccccccccEEEeeccccccccccchhhcc
Q 038204 46 KFSQVKHLQPYKLNDLKQLWKQGSKLDFIFTNLEILRVYCCQNLIVLLPSSSVSFRNLTDLQVWGCKELMKLVTSSTAKS 125 (254)
Q Consensus 46 ~~~~L~~L~L~~~~~L~~l~~~~~~~~~~~~~L~~L~l~~C~~L~~l~p~~~~~~~~L~~L~i~~C~~L~~l~~~~~~~~ 125 (254)
.+.+++.|.+++| .|+.++ ...++|++|.+.+|.+++.+ |..+ .++|+.|.|.+|.++..+|
T Consensus 50 ~~~~l~~L~Is~c-~L~sLP-------~LP~sLtsL~Lsnc~nLtsL-P~~L--P~nLe~L~Ls~Cs~L~sLP------- 111 (426)
T PRK15386 50 EARASGRLYIKDC-DIESLP-------VLPNELTEITIENCNNLTTL-PGSI--PEGLEKLTVCHCPEISGLP------- 111 (426)
T ss_pred HhcCCCEEEeCCC-CCcccC-------CCCCCCcEEEccCCCCcccC-Cchh--hhhhhheEccCcccccccc-------
Confidence 4789999999999 777762 23457999999999999887 5522 4689999999998887653
Q ss_pred ccccceeEEec
Q 038204 126 LVRLRIMKVCG 136 (254)
Q Consensus 126 l~~L~~L~i~~ 136 (254)
+.|+.|++..
T Consensus 112 -~sLe~L~L~~ 121 (426)
T PRK15386 112 -ESVRSLEIKG 121 (426)
T ss_pred -cccceEEeCC
Confidence 2356777653
No 17
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=98.21 E-value=4.5e-08 Score=88.48 Aligned_cols=120 Identities=19% Similarity=0.083 Sum_probs=67.5
Q ss_pred hCCCCcEEEEecc-cceEecCCCCccccccCCCCcccEEeccCC-cccccccccCCccccCCCCccEEEEecCCCcceec
Q 038204 16 KFRNLEILYLSRT-SYTEILSNEGHSEKHVGKFSQVKHLQPYKL-NDLKQLWKQGSKLDFIFTNLEILRVYCCQNLIVLL 93 (254)
Q Consensus 16 ~l~~L~~L~l~~c-~l~~l~~~~~~~~~~~~~~~~L~~L~L~~~-~~L~~l~~~~~~~~~~~~~L~~L~l~~C~~L~~l~ 93 (254)
.+++|+.|.+.+| .+.+... ......++.|+.|.+.++ ................+++|+.|++..|..+.+..
T Consensus 186 ~~~~L~~l~l~~~~~~~~~~~-----~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~ 260 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSKITDDSL-----DALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIG 260 (482)
T ss_pred hCchhhHhhhcccccCChhhH-----HHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchh
Confidence 4677777777777 6654210 011235777777777663 22111110111123455677777777776655442
Q ss_pred CCc-ccccccccEEEeeccccccccccchhhccccccceeEEecCCCc
Q 038204 94 PSS-SVSFRNLTDLQVWGCKELMKLVTSSTAKSLVRLRIMKVCGSRAM 140 (254)
Q Consensus 94 p~~-~~~~~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~C~~l 140 (254)
-.. ...+++|+.|.+.+|..+++......+..+++|++|+++.|..+
T Consensus 261 l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~ 308 (482)
T KOG1947|consen 261 LSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGL 308 (482)
T ss_pred HHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccc
Confidence 111 12266777777777777666655566667777777777777665
No 18
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.21 E-value=1.9e-08 Score=86.80 Aligned_cols=171 Identities=15% Similarity=0.099 Sum_probs=82.1
Q ss_pred HHhhCCCCcEEEEecc-cceEecCCCCccccccCCCCcccEEeccCCcccccccccCCccccCCCCccEEEEecCCCcce
Q 038204 13 LLEKFRNLEILYLSRT-SYTEILSNEGHSEKHVGKFSQVKHLQPYKLNDLKQLWKQGSKLDFIFTNLEILRVYCCQNLIV 91 (254)
Q Consensus 13 ~~~~l~~L~~L~l~~c-~l~~l~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~l~~~~~~~~~~~~~L~~L~l~~C~~L~~ 91 (254)
+...+++++.|.+.+| .+++.-- ......+++|++|.+..|++++..... .....+++|++|.++-|+.+..
T Consensus 159 ~~~~CpnIehL~l~gc~~iTd~s~-----~sla~~C~~l~~l~L~~c~~iT~~~Lk--~la~gC~kL~~lNlSwc~qi~~ 231 (483)
T KOG4341|consen 159 FASNCPNIEHLALYGCKKITDSSL-----LSLARYCRKLRHLNLHSCSSITDVSLK--YLAEGCRKLKYLNLSWCPQISG 231 (483)
T ss_pred HhhhCCchhhhhhhcceeccHHHH-----HHHHHhcchhhhhhhcccchhHHHHHH--HHHHhhhhHHHhhhccCchhhc
Confidence 4456788888888887 6653211 001124556666666666555443111 1133455555555555555433
Q ss_pred ec--CC-------------------------cccccccccEEEeeccccccccccchhhccccccceeEEecCCCceeEe
Q 038204 92 LL--PS-------------------------SSVSFRNLTDLQVWGCKELMKLVTSSTAKSLVRLRIMKVCGSRAMTQVV 144 (254)
Q Consensus 92 l~--p~-------------------------~~~~~~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~C~~l~~i~ 144 (254)
-. +- ....++-+..+++..|..+++.........+++|+.|..++|..+...+
T Consensus 232 ~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~ 311 (483)
T KOG4341|consen 232 NGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEV 311 (483)
T ss_pred CcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHH
Confidence 10 00 0011222333444455555544333334445555555555555432211
Q ss_pred ecCCCCccccccccccceeecccccccceecCCCccccCCCcCeEEEeCCC
Q 038204 145 TSEKDGAEDEIVFSNLKALTLLDLDSLTSFCSGNYTFKFPSLRDLEVIGCP 195 (254)
Q Consensus 145 ~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~~sL~~L~i~~Cp 195 (254)
... -....++|+.|.+..|.++.+.+.......++.|+.+++.+|.
T Consensus 312 l~a-----Lg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~ 357 (483)
T KOG4341|consen 312 LWA-----LGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECG 357 (483)
T ss_pred HHH-----HhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccc
Confidence 100 1112466777777777666665554444555556655555543
No 19
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=98.11 E-value=6.9e-08 Score=74.38 Aligned_cols=162 Identities=20% Similarity=0.214 Sum_probs=96.2
Q ss_pred hCCCCcEEEEecccceEecCCCCccccccCCCCcccEEeccCCcccccccccCCccccCCCCccEEEEecCCCcceecCC
Q 038204 16 KFRNLEILYLSRTSYTEILSNEGHSEKHVGKFSQVKHLQPYKLNDLKQLWKQGSKLDFIFTNLEILRVYCCQNLIVLLPS 95 (254)
Q Consensus 16 ~l~~L~~L~l~~c~l~~l~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~l~~~~~~~~~~~~~L~~L~l~~C~~L~~l~p~ 95 (254)
.+.++..|.++.+++..+++ .+..+.+|+.|++.+- +++.+. .....+|.|+.|.+. .+.|..+ |.
T Consensus 31 ~~s~ITrLtLSHNKl~~vpp-------nia~l~nlevln~~nn-qie~lp----~~issl~klr~lnvg-mnrl~~l-pr 96 (264)
T KOG0617|consen 31 NMSNITRLTLSHNKLTVVPP-------NIAELKNLEVLNLSNN-QIEELP----TSISSLPKLRILNVG-MNRLNIL-PR 96 (264)
T ss_pred chhhhhhhhcccCceeecCC-------cHHHhhhhhhhhcccc-hhhhcC----hhhhhchhhhheecc-hhhhhcC-cc
Confidence 35566667777776666655 2445667777776552 444432 224556666666664 4455555 66
Q ss_pred cccccccccEEEeeccccccccccchhhccccccceeEEecCCCceeEeecCCCCccccccccccceeecccccccceec
Q 038204 96 SSVSFRNLTDLQVWGCKELMKLVTSSTAKSLVRLRIMKVCGSRAMTQVVTSEKDGAEDEIVFSNLKALTLLDLDSLTSFC 175 (254)
Q Consensus 96 ~~~~~~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~C~~l~~i~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~ 175 (254)
+++.||-|+.|++.+.. |..-..+.....+.-|+.|.+++.+ .+-++. ....+.+|+.|.++.- .|-+++
T Consensus 97 gfgs~p~levldltynn-l~e~~lpgnff~m~tlralyl~dnd-fe~lp~-------dvg~lt~lqil~lrdn-dll~lp 166 (264)
T KOG0617|consen 97 GFGSFPALEVLDLTYNN-LNENSLPGNFFYMTTLRALYLGDND-FEILPP-------DVGKLTNLQILSLRDN-DLLSLP 166 (264)
T ss_pred ccCCCchhhhhhccccc-cccccCCcchhHHHHHHHHHhcCCC-cccCCh-------hhhhhcceeEEeeccC-chhhCc
Confidence 67777777777776543 2221111223344555666666654 333333 4456777887777764 555666
Q ss_pred CCCccccCCCcCeEEEeCCCCCcccCCCC
Q 038204 176 SGNYTFKFPSLRDLEVIGCPKMKIFTTGE 204 (254)
Q Consensus 176 ~~~~~~~~~sL~~L~i~~Cp~L~~lp~~~ 204 (254)
.. ...+..|++|+|.+- +++.+|+..
T Consensus 167 ke--ig~lt~lrelhiqgn-rl~vlppel 192 (264)
T KOG0617|consen 167 KE--IGDLTRLRELHIQGN-RLTVLPPEL 192 (264)
T ss_pred HH--HHHHHHHHHHhcccc-eeeecChhh
Confidence 53 356778999999876 688888753
No 20
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.09 E-value=1.1e-07 Score=79.10 Aligned_cols=140 Identities=19% Similarity=0.149 Sum_probs=71.8
Q ss_pred CCCcccEEeccCCcccccccccCCccccCCCCccEEEEecCCCcceecCCc-ccccccccEEEeecccc-ccccccchhh
Q 038204 46 KFSQVKHLQPYKLNDLKQLWKQGSKLDFIFTNLEILRVYCCQNLIVLLPSS-SVSFRNLTDLQVWGCKE-LMKLVTSSTA 123 (254)
Q Consensus 46 ~~~~L~~L~L~~~~~L~~l~~~~~~~~~~~~~L~~L~l~~C~~L~~l~p~~-~~~~~~L~~L~i~~C~~-L~~l~~~~~~ 123 (254)
.-.+|+.|+|+.|..++.. +.......+..|..|+|+-|.--++..... ..--++|+.|++++|.+ +..-.....+
T Consensus 232 kN~~L~~lnlsm~sG~t~n--~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~ 309 (419)
T KOG2120|consen 232 KNSNLVRLNLSMCSGFTEN--ALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLV 309 (419)
T ss_pred ccccceeeccccccccchh--HHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHH
Confidence 3455666666666655543 111223445566666666554332221000 11235666666666653 2111112235
Q ss_pred ccccccceeEEecCCCceeEeecCCCCccccccccccceeecccccccceecCCCccccCCCcCeEEEeCC
Q 038204 124 KSLVRLRIMKVCGSRAMTQVVTSEKDGAEDEIVFSNLKALTLLDLDSLTSFCSGNYTFKFPSLRDLEVIGC 194 (254)
Q Consensus 124 ~~l~~L~~L~i~~C~~l~~i~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~~sL~~L~i~~C 194 (254)
..+|+|..|++++|..++.-. ......|+.|++|.+..|..+.---. ......|+|.+|++.+|
T Consensus 310 ~rcp~l~~LDLSD~v~l~~~~------~~~~~kf~~L~~lSlsRCY~i~p~~~-~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 310 RRCPNLVHLDLSDSVMLKNDC------FQEFFKFNYLQHLSLSRCYDIIPETL-LELNSKPSLVYLDVFGC 373 (419)
T ss_pred HhCCceeeeccccccccCchH------HHHHHhcchheeeehhhhcCCChHHe-eeeccCcceEEEEeccc
Confidence 667777777777776654311 12334577777777777765421100 01235677888887776
No 21
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=98.09 E-value=5.5e-06 Score=78.87 Aligned_cols=26 Identities=27% Similarity=0.424 Sum_probs=17.7
Q ss_pred ceechHHHhhCCCCcEEEEecccceEecC
Q 038204 7 ACFPLGLLEKFRNLEILYLSRTSYTEILS 35 (254)
Q Consensus 7 ~~~P~~~~~~l~~L~~L~l~~c~l~~l~~ 35 (254)
..+|..+. .+|+.|++++|.++.++.
T Consensus 212 tsLP~~l~---~nL~~L~Ls~N~LtsLP~ 237 (754)
T PRK15370 212 KSLPENLQ---GNIKTLYANSNQLTSIPA 237 (754)
T ss_pred CcCChhhc---cCCCEEECCCCccccCCh
Confidence 34666543 588888888887776653
No 22
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.09 E-value=7.6e-06 Score=52.56 Aligned_cols=59 Identities=24% Similarity=0.301 Sum_probs=32.7
Q ss_pred CCccEEEEecCCCcceecCCcccccccccEEEeeccccccccccchhhccccccceeEEecC
Q 038204 76 TNLEILRVYCCQNLIVLLPSSSVSFRNLTDLQVWGCKELMKLVTSSTAKSLVRLRIMKVCGS 137 (254)
Q Consensus 76 ~~L~~L~l~~C~~L~~l~p~~~~~~~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~C 137 (254)
|+|++|++++| +++.+.+..+..+++|++|+++++ +++.+++ ....++++|+.|++++|
T Consensus 1 p~L~~L~l~~n-~l~~i~~~~f~~l~~L~~L~l~~N-~l~~i~~-~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 1 PNLESLDLSNN-KLTEIPPDSFSNLPNLETLDLSNN-NLTSIPP-DAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TTESEEEETSS-TESEECTTTTTTGTTESEEEETSS-SESEEET-TTTTTSTTESEEEETSS
T ss_pred CcCcEEECCCC-CCCccCHHHHcCCCCCCEeEccCC-ccCccCH-HHHcCCCCCCEEeCcCC
Confidence 35566666665 555554444555666666666633 3444432 33455666666666655
No 23
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=97.98 E-value=2e-05 Score=75.04 Aligned_cols=32 Identities=16% Similarity=0.041 Sum_probs=23.0
Q ss_pred CCCCcEEEEecccceEecCCCCccccccCCCCcccEEeccCC
Q 038204 17 FRNLEILYLSRTSYTEILSNEGHSEKHVGKFSQVKHLQPYKL 58 (254)
Q Consensus 17 l~~L~~L~l~~c~l~~l~~~~~~~~~~~~~~~~L~~L~L~~~ 58 (254)
.++|++|++++|.++.++.. .++|++|.+.++
T Consensus 241 p~~Lk~LdLs~N~LtsLP~l----------p~sL~~L~Ls~N 272 (788)
T PRK15387 241 PPELRTLEVSGNQLTSLPVL----------PPGLLELSIFSN 272 (788)
T ss_pred CCCCcEEEecCCccCcccCc----------ccccceeeccCC
Confidence 58999999999988877541 456666666554
No 24
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=97.93 E-value=6.3e-07 Score=81.51 Aligned_cols=181 Identities=18% Similarity=0.207 Sum_probs=97.6
Q ss_pred CCCceechHHHhhCCCCcEEEEecccceEecCCCCccccccCCCCcccEEeccCCcccccccccCCccccCCCCccEEEE
Q 038204 4 DDSACFPLGLLEKFRNLEILYLSRTSYTEILSNEGHSEKHVGKFSQVKHLQPYKLNDLKQLWKQGSKLDFIFTNLEILRV 83 (254)
Q Consensus 4 ~~~~~~P~~~~~~l~~L~~L~l~~c~l~~l~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~l~~~~~~~~~~~~~L~~L~l 83 (254)
+.-..+|..+.-++..|-.|+++++.++.+|+ .+-.+.+|+.|.|++.|-.-. .....+.+++|+.|++
T Consensus 136 N~IetIPn~lfinLtDLLfLDLS~NrLe~LPP-------Q~RRL~~LqtL~Ls~NPL~hf----QLrQLPsmtsL~vLhm 204 (1255)
T KOG0444|consen 136 NNIETIPNSLFINLTDLLFLDLSNNRLEMLPP-------QIRRLSMLQTLKLSNNPLNHF----QLRQLPSMTSLSVLHM 204 (1255)
T ss_pred CccccCCchHHHhhHhHhhhccccchhhhcCH-------HHHHHhhhhhhhcCCChhhHH----HHhcCccchhhhhhhc
Confidence 33344555555555555555555555555544 233567788888877653211 1122345667777777
Q ss_pred ecCCC-cceecCCcccccccccEEEeeccccccccccchhhccccccceeEEecCCCceeEeecCCC-------------
Q 038204 84 YCCQN-LIVLLPSSSVSFRNLTDLQVWGCKELMKLVTSSTAKSLVRLRIMKVCGSRAMTQVVTSEKD------------- 149 (254)
Q Consensus 84 ~~C~~-L~~l~p~~~~~~~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~C~~l~~i~~~~~~------------- 149 (254)
++-.. +..+ |.++..+.||+.++++ |.+|..+| ..+-.+++|+.|++++.. ++++-...+.
T Consensus 205 s~TqRTl~N~-Ptsld~l~NL~dvDlS-~N~Lp~vP--ecly~l~~LrrLNLS~N~-iteL~~~~~~W~~lEtLNlSrNQ 279 (1255)
T KOG0444|consen 205 SNTQRTLDNI-PTSLDDLHNLRDVDLS-ENNLPIVP--ECLYKLRNLRRLNLSGNK-ITELNMTEGEWENLETLNLSRNQ 279 (1255)
T ss_pred ccccchhhcC-CCchhhhhhhhhcccc-ccCCCcch--HHHhhhhhhheeccCcCc-eeeeeccHHHHhhhhhhccccch
Confidence 76443 3344 5557788888888886 66676664 345677888888888764 4443211100
Q ss_pred ---Cccccccccccceeeccccc-ccceecCCCccccCCCcCeEEEeCCCCCcccCCC
Q 038204 150 ---GAEDEIVFSNLKALTLLDLD-SLTSFCSGNYTFKFPSLRDLEVIGCPKMKIFTTG 203 (254)
Q Consensus 150 ---~~~~~~~~~~L~~L~l~~c~-~L~~~~~~~~~~~~~sL~~L~i~~Cp~L~~lp~~ 203 (254)
.+.....+++|+.|...+.. ....+|+|. ..+..|+.+...+ .+|+..|+|
T Consensus 280 Lt~LP~avcKL~kL~kLy~n~NkL~FeGiPSGI--GKL~~Levf~aan-N~LElVPEg 334 (1255)
T KOG0444|consen 280 LTVLPDAVCKLTKLTKLYANNNKLTFEGIPSGI--GKLIQLEVFHAAN-NKLELVPEG 334 (1255)
T ss_pred hccchHHHhhhHHHHHHHhccCcccccCCccch--hhhhhhHHHHhhc-cccccCchh
Confidence 01133455667766665431 344455543 3444555554332 134444444
No 25
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=97.93 E-value=2.8e-05 Score=49.89 Aligned_cols=37 Identities=27% Similarity=0.303 Sum_probs=20.9
Q ss_pred CCCCccEEEEecCCCcceecCCcccccccccEEEeecc
Q 038204 74 IFTNLEILRVYCCQNLIVLLPSSSVSFRNLTDLQVWGC 111 (254)
Q Consensus 74 ~~~~L~~L~l~~C~~L~~l~p~~~~~~~~L~~L~i~~C 111 (254)
.+++|++|++++ .+++.+.+..+..+++|++|++++|
T Consensus 23 ~l~~L~~L~l~~-N~l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 23 NLPNLETLDLSN-NNLTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TGTTESEEEETS-SSESEEETTTTTTSTTESEEEETSS
T ss_pred CCCCCCEeEccC-CccCccCHHHHcCCCCCCEEeCcCC
Confidence 355555555553 3455554544566666666666655
No 26
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=97.89 E-value=9.6e-07 Score=75.69 Aligned_cols=11 Identities=27% Similarity=0.057 Sum_probs=6.1
Q ss_pred CCcCeEEEeCC
Q 038204 184 PSLRDLEVIGC 194 (254)
Q Consensus 184 ~sL~~L~i~~C 194 (254)
+.|++|++.+|
T Consensus 250 ~~L~~L~l~~n 260 (319)
T cd00116 250 ISLLTLSLSCN 260 (319)
T ss_pred CCceEEEccCC
Confidence 45555555555
No 27
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=97.89 E-value=1.1e-05 Score=63.25 Aligned_cols=14 Identities=21% Similarity=0.290 Sum_probs=5.1
Q ss_pred cccccceeeccccc
Q 038204 156 VFSNLKALTLLDLD 169 (254)
Q Consensus 156 ~~~~L~~L~l~~c~ 169 (254)
.+++|+.|++.+.|
T Consensus 111 ~l~~L~~L~L~~NP 124 (175)
T PF14580_consen 111 SLPKLRVLSLEGNP 124 (175)
T ss_dssp G-TT--EEE-TT-G
T ss_pred cCCCcceeeccCCc
Confidence 45666666665554
No 28
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=97.83 E-value=2.9e-05 Score=70.32 Aligned_cols=180 Identities=16% Similarity=0.162 Sum_probs=103.6
Q ss_pred CCCceechHHHhhCCCCcEEEEecccceEecCCCCcc-----------------ccccCCCCcccEEeccCCcccccccc
Q 038204 4 DDSACFPLGLLEKFRNLEILYLSRTSYTEILSNEGHS-----------------EKHVGKFSQVKHLQPYKLNDLKQLWK 66 (254)
Q Consensus 4 ~~~~~~P~~~~~~l~~L~~L~l~~c~l~~l~~~~~~~-----------------~~~~~~~~~L~~L~L~~~~~L~~l~~ 66 (254)
+.-+.+-..++.+++||+++++..+.++.+|...+.. ++.+..+|.|+.|+|+.- .+..+..
T Consensus 88 Nkl~~id~~~f~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN-~is~i~~ 166 (873)
T KOG4194|consen 88 NKLSHIDFEFFYNLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRN-LISEIPK 166 (873)
T ss_pred cccccCcHHHHhcCCcceeeeeccchhhhcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhhc-hhhcccC
Confidence 3334445556678999999999999888888743221 112334666666666442 2333321
Q ss_pred cCCccccCCCCccEEEEecCCCcceecCCcccccccccEEEeeccccccccccchhhccccccceeEEecCCCceeEe--
Q 038204 67 QGSKLDFIFTNLEILRVYCCQNLIVLLPSSSVSFRNLTDLQVWGCKELMKLVTSSTAKSLVRLRIMKVCGSRAMTQVV-- 144 (254)
Q Consensus 67 ~~~~~~~~~~~L~~L~l~~C~~L~~l~p~~~~~~~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~C~~l~~i~-- 144 (254)
. ..+.-.++++|.+.+ +.++++....+.++.+|..|.+++. .++.++. ...+.+++|+.|++.... ++.+-
T Consensus 167 ~---sfp~~~ni~~L~La~-N~It~l~~~~F~~lnsL~tlkLsrN-rittLp~-r~Fk~L~~L~~LdLnrN~-irive~l 239 (873)
T KOG4194|consen 167 P---SFPAKVNIKKLNLAS-NRITTLETGHFDSLNSLLTLKLSRN-RITTLPQ-RSFKRLPKLESLDLNRNR-IRIVEGL 239 (873)
T ss_pred C---CCCCCCCceEEeecc-ccccccccccccccchheeeecccC-cccccCH-HHhhhcchhhhhhccccc-eeeehhh
Confidence 1 122335788888887 3566665444666778888888765 4555654 446678888888887652 32220
Q ss_pred ecCCC----------------CccccccccccceeecccccccceecCCCccccCCCcCeEEEeC
Q 038204 145 TSEKD----------------GAEDEIVFSNLKALTLLDLDSLTSFCSGNYTFKFPSLRDLEVIG 193 (254)
Q Consensus 145 ~~~~~----------------~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~~sL~~L~i~~ 193 (254)
...+. ..+....+.++++|++.. .++..+..+. .+.+.+|++|+++.
T Consensus 240 tFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~-N~l~~vn~g~-lfgLt~L~~L~lS~ 302 (873)
T KOG4194|consen 240 TFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLET-NRLQAVNEGW-LFGLTSLEQLDLSY 302 (873)
T ss_pred hhcCchhhhhhhhhhcCcccccCcceeeecccceeeccc-chhhhhhccc-ccccchhhhhccch
Confidence 00000 001223345556666553 3555555442 35677788887765
No 29
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=97.74 E-value=3e-06 Score=72.65 Aligned_cols=89 Identities=17% Similarity=0.085 Sum_probs=43.7
Q ss_pred ccccEEEeeccccccccc---cchhhccccccceeEEecCCCcee-EeecCCCCccccccccccceeecccccccceecC
Q 038204 101 RNLTDLQVWGCKELMKLV---TSSTAKSLVRLRIMKVCGSRAMTQ-VVTSEKDGAEDEIVFSNLKALTLLDLDSLTSFCS 176 (254)
Q Consensus 101 ~~L~~L~i~~C~~L~~l~---~~~~~~~l~~L~~L~i~~C~~l~~-i~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~ 176 (254)
++|+.|++++|. ++... .......+++|++|++++|. +.. ... ........+++|+.|++.+| .+.....
T Consensus 137 ~~L~~L~L~~n~-l~~~~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~---~l~~~l~~~~~L~~L~L~~n-~i~~~~~ 210 (319)
T cd00116 137 PALEKLVLGRNR-LEGASCEALAKALRANRDLKELNLANNG-IGDAGIR---ALAEGLKANCNLEVLDLNNN-GLTDEGA 210 (319)
T ss_pred CCceEEEcCCCc-CCchHHHHHHHHHHhCCCcCEEECcCCC-CchHHHH---HHHHHHHhCCCCCEEeccCC-ccChHHH
Confidence 566666666664 22100 01123344566666666654 211 000 00001123458888888877 3332211
Q ss_pred C---CccccCCCcCeEEEeCCC
Q 038204 177 G---NYTFKFPSLRDLEVIGCP 195 (254)
Q Consensus 177 ~---~~~~~~~sL~~L~i~~Cp 195 (254)
. .....+++|++|++++|+
T Consensus 211 ~~l~~~~~~~~~L~~L~ls~n~ 232 (319)
T cd00116 211 SALAETLASLKSLEVLNLGDNN 232 (319)
T ss_pred HHHHHHhcccCCCCEEecCCCc
Confidence 1 112356789999998885
No 30
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.61 E-value=3.6e-06 Score=70.27 Aligned_cols=138 Identities=14% Similarity=0.007 Sum_probs=89.7
Q ss_pred CCCCcEEEEecc-cceEecCCCCccccccCCCCcccEEeccCCcccccccccCCccccCCCCccEEEEecCCCcceec--
Q 038204 17 FRNLEILYLSRT-SYTEILSNEGHSEKHVGKFSQVKHLQPYKLNDLKQLWKQGSKLDFIFTNLEILRVYCCQNLIVLL-- 93 (254)
Q Consensus 17 l~~L~~L~l~~c-~l~~l~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~l~~~~~~~~~~~~~L~~L~l~~C~~L~~l~-- 93 (254)
=.+|+.|+|+.| ++++.-. ......+..|..|+|+.|.-.+..-. .....--++|+.|+|+||.+--...
T Consensus 233 N~~L~~lnlsm~sG~t~n~~-----~ll~~scs~L~~LNlsWc~l~~~~Vt--v~V~hise~l~~LNlsG~rrnl~~sh~ 305 (419)
T KOG2120|consen 233 NSNLVRLNLSMCSGFTENAL-----QLLLSSCSRLDELNLSWCFLFTEKVT--VAVAHISETLTQLNLSGYRRNLQKSHL 305 (419)
T ss_pred cccceeeccccccccchhHH-----HHHHHhhhhHhhcCchHhhccchhhh--HHHhhhchhhhhhhhhhhHhhhhhhHH
Confidence 355666666666 5543210 01134588999999988865544311 1223456789999999997532111
Q ss_pred CCcccccccccEEEeeccccccccccchhhccccccceeEEecCCCceeEeecCCCCccccccccccceeecccc
Q 038204 94 PSSSVSFRNLTDLQVWGCKELMKLVTSSTAKSLVRLRIMKVCGSRAMTQVVTSEKDGAEDEIVFSNLKALTLLDL 168 (254)
Q Consensus 94 p~~~~~~~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~C~~l~~i~~~~~~~~~~~~~~~~L~~L~l~~c 168 (254)
......+|+|.+|++++|..+++- .......++.|++|.++.|..+.- . . -......|.|.+|++.+|
T Consensus 306 ~tL~~rcp~l~~LDLSD~v~l~~~-~~~~~~kf~~L~~lSlsRCY~i~p--~--~--~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 306 STLVRRCPNLVHLDLSDSVMLKND-CFQEFFKFNYLQHLSLSRCYDIIP--E--T--LLELNSKPSLVYLDVFGC 373 (419)
T ss_pred HHHHHhCCceeeeccccccccCch-HHHHHHhcchheeeehhhhcCCCh--H--H--eeeeccCcceEEEEeccc
Confidence 001356999999999999999873 334556889999999999986510 0 0 012345789999999988
No 31
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=97.49 E-value=9.7e-05 Score=57.96 Aligned_cols=81 Identities=12% Similarity=0.167 Sum_probs=16.8
Q ss_pred CCcccEEeccCCcccccccccCCccccCCCCccEEEEecCCCcceecCCcccccccccEEEeeccccccccccchhhccc
Q 038204 47 FSQVKHLQPYKLNDLKQLWKQGSKLDFIFTNLEILRVYCCQNLIVLLPSSSVSFRNLTDLQVWGCKELMKLVTSSTAKSL 126 (254)
Q Consensus 47 ~~~L~~L~L~~~~~L~~l~~~~~~~~~~~~~L~~L~l~~C~~L~~l~p~~~~~~~~L~~L~i~~C~~L~~l~~~~~~~~l 126 (254)
..++++|+|.++ .++.+ +.. ...+.+|+.|+++++ .++.+ .. +..+++|+.|++++. +++++.. .....+
T Consensus 18 ~~~~~~L~L~~n-~I~~I--e~L--~~~l~~L~~L~Ls~N-~I~~l-~~-l~~L~~L~~L~L~~N-~I~~i~~-~l~~~l 87 (175)
T PF14580_consen 18 PVKLRELNLRGN-QISTI--ENL--GATLDKLEVLDLSNN-QITKL-EG-LPGLPRLKTLDLSNN-RISSISE-GLDKNL 87 (175)
T ss_dssp ---------------------S----TT-TT--EEE-TTS---S---TT-----TT--EEE--SS----S-CH-HHHHH-
T ss_pred cccccccccccc-ccccc--cch--hhhhcCCCEEECCCC-CCccc-cC-ccChhhhhhcccCCC-CCCcccc-chHHhC
Confidence 345666666554 23332 110 123456666666654 34444 22 445566666666543 3444321 112345
Q ss_pred cccceeEEecC
Q 038204 127 VRLRIMKVCGS 137 (254)
Q Consensus 127 ~~L~~L~i~~C 137 (254)
|+|++|.+++.
T Consensus 88 p~L~~L~L~~N 98 (175)
T PF14580_consen 88 PNLQELYLSNN 98 (175)
T ss_dssp TT--EEE-TTS
T ss_pred CcCCEEECcCC
Confidence 55566655544
No 32
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.46 E-value=1.7e-05 Score=75.01 Aligned_cols=86 Identities=20% Similarity=0.230 Sum_probs=47.0
Q ss_pred CCcccEEeccCCcccccccccCCccccCCCCccEEEEecCCCcceecCCcccccccccEEEeeccccccccccchhhccc
Q 038204 47 FSQVKHLQPYKLNDLKQLWKQGSKLDFIFTNLEILRVYCCQNLIVLLPSSSVSFRNLTDLQVWGCKELMKLVTSSTAKSL 126 (254)
Q Consensus 47 ~~~L~~L~L~~~~~L~~l~~~~~~~~~~~~~L~~L~l~~C~~L~~l~p~~~~~~~~L~~L~i~~C~~L~~l~~~~~~~~l 126 (254)
-.+|++|+|++-..+..-|.. .....+|+|++|.+.+-.-..+-......+||||..|+|++++ ++++ ...++|
T Consensus 121 r~nL~~LdI~G~~~~s~~W~~--kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~Tn-I~nl---~GIS~L 194 (699)
T KOG3665|consen 121 RQNLQHLDISGSELFSNGWPK--KIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTN-ISNL---SGISRL 194 (699)
T ss_pred HHhhhhcCccccchhhccHHH--HHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCC-ccCc---HHHhcc
Confidence 456777777765555444431 2245677777777776321111001113457777777777763 4444 445566
Q ss_pred cccceeEEecCC
Q 038204 127 VRLRIMKVCGSR 138 (254)
Q Consensus 127 ~~L~~L~i~~C~ 138 (254)
.+|+.|.+.+.+
T Consensus 195 knLq~L~mrnLe 206 (699)
T KOG3665|consen 195 KNLQVLSMRNLE 206 (699)
T ss_pred ccHHHHhccCCC
Confidence 666666665543
No 33
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.41 E-value=1.2e-05 Score=72.58 Aligned_cols=139 Identities=19% Similarity=0.169 Sum_probs=86.3
Q ss_pred CCCcccEEeccCCcccccccccCCccccCCCCccEEEEecC-CCcceec---CCcccccccccEEEeeccccccccccch
Q 038204 46 KFSQVKHLQPYKLNDLKQLWKQGSKLDFIFTNLEILRVYCC-QNLIVLL---PSSSVSFRNLTDLQVWGCKELMKLVTSS 121 (254)
Q Consensus 46 ~~~~L~~L~L~~~~~L~~l~~~~~~~~~~~~~L~~L~l~~C-~~L~~l~---p~~~~~~~~L~~L~i~~C~~L~~l~~~~ 121 (254)
.++.|+.|.+.+|..+...+ .......+++|+.|++.+| ....... ......+++|+.|++.+|..+++.....
T Consensus 186 ~~~~L~~l~l~~~~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~ 263 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSKITDDS--LDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSA 263 (482)
T ss_pred hCchhhHhhhcccccCChhh--HHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHH
Confidence 47888888888888776532 1123566888999999884 3322221 1113456888999999998877776666
Q ss_pred hhccccccceeEEecCCCceeEeecCCCCccccccccccceeecccccccceecCCCccccCCCcCeEEE
Q 038204 122 TAKSLVRLRIMKVCGSRAMTQVVTSEKDGAEDEIVFSNLKALTLLDLDSLTSFCSGNYTFKFPSLRDLEV 191 (254)
Q Consensus 122 ~~~~l~~L~~L~i~~C~~l~~i~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~~sL~~L~i 191 (254)
.+..+++|+.|.+.+|..+.. .+ .......++.|++|++.+|..+++-........++.|+.+.+
T Consensus 264 l~~~c~~L~~L~l~~c~~lt~----~g-l~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~ 328 (482)
T KOG1947|consen 264 LASRCPNLETLSLSNCSNLTD----EG-LVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKL 328 (482)
T ss_pred HHhhCCCcceEccCCCCccch----hH-HHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhh
Confidence 666788999999888886321 10 011233567788888888877644222112233454444433
No 34
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.32 E-value=4.2e-05 Score=72.30 Aligned_cols=136 Identities=20% Similarity=0.173 Sum_probs=77.9
Q ss_pred CCCCcEEEEecc-cceEecCCCCccccccC-CCCcccEEeccCCcccccccccCCccccCCCCccEEEEecCCCcceecC
Q 038204 17 FRNLEILYLSRT-SYTEILSNEGHSEKHVG-KFSQVKHLQPYKLNDLKQLWKQGSKLDFIFTNLEILRVYCCQNLIVLLP 94 (254)
Q Consensus 17 l~~L~~L~l~~c-~l~~l~~~~~~~~~~~~-~~~~L~~L~L~~~~~L~~l~~~~~~~~~~~~~L~~L~l~~C~~L~~l~p 94 (254)
-.+|+.|+|+|- .+..-|. ..+| .||+|+.|.+.+-.-... .......+||||..|+|+++ ++..+
T Consensus 121 r~nL~~LdI~G~~~~s~~W~------~kig~~LPsL~sL~i~~~~~~~~---dF~~lc~sFpNL~sLDIS~T-nI~nl-- 188 (699)
T KOG3665|consen 121 RQNLQHLDISGSELFSNGWP------KKIGTMLPSLRSLVISGRQFDND---DFSQLCASFPNLRSLDISGT-NISNL-- 188 (699)
T ss_pred HHhhhhcCccccchhhccHH------HHHhhhCcccceEEecCceecch---hHHHHhhccCccceeecCCC-CccCc--
Confidence 367778888776 4433222 1233 589999999877422111 01122467899999999986 45555
Q ss_pred CcccccccccEEEeeccccccccccchhhccccccceeEEecCCCceeEeecCCCCccccccccccceeecc
Q 038204 95 SSSVSFRNLTDLQVWGCKELMKLVTSSTAKSLVRLRIMKVCGSRAMTQVVTSEKDGAEDEIVFSNLKALTLL 166 (254)
Q Consensus 95 ~~~~~~~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~C~~l~~i~~~~~~~~~~~~~~~~L~~L~l~ 166 (254)
.++..++||+.|.+++..-.. ..-.....+|.+|+.|+|+.=.....-...... -.....+|+|+.|+.+
T Consensus 189 ~GIS~LknLq~L~mrnLe~e~-~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qY-lec~~~LpeLrfLDcS 258 (699)
T KOG3665|consen 189 SGISRLKNLQVLSMRNLEFES-YQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQY-LECGMVLPELRFLDCS 258 (699)
T ss_pred HHHhccccHHHHhccCCCCCc-hhhHHHHhcccCCCeeeccccccccchHHHHHH-HHhcccCccccEEecC
Confidence 247788888888777654222 111234567888899999875543221000000 0112236777777766
No 35
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=97.23 E-value=5.4e-05 Score=71.77 Aligned_cols=184 Identities=17% Similarity=0.187 Sum_probs=98.3
Q ss_pred CCceechHHHhhCCCCcEEEEecccceEecCC----CC------------ccccccCCCCcccEEeccCCcccccccccC
Q 038204 5 DSACFPLGLLEKFRNLEILYLSRTSYTEILSN----EG------------HSEKHVGKFSQVKHLQPYKLNDLKQLWKQG 68 (254)
Q Consensus 5 ~~~~~P~~~~~~l~~L~~L~l~~c~l~~l~~~----~~------------~~~~~~~~~~~L~~L~L~~~~~L~~l~~~~ 68 (254)
.-..+|.| +..+.+|+.+.+..+++..++.- .. -.....+.+.+|++|++... +|..+....
T Consensus 252 ~l~~lp~w-i~~~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~N-~L~~lp~~~ 329 (1081)
T KOG0618|consen 252 NLSNLPEW-IGACANLEALNANHNRLVALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQSN-NLPSLPDNF 329 (1081)
T ss_pred hhhcchHH-HHhcccceEecccchhHHhhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehhc-cccccchHH
Confidence 33457755 46788888888887765554331 00 00011334677777777432 222221110
Q ss_pred C----------------------ccccCCCCccEEEEecCCCcce-ecCCcccccccccEEEeeccccccccccchhhcc
Q 038204 69 S----------------------KLDFIFTNLEILRVYCCQNLIV-LLPSSSVSFRNLTDLQVWGCKELMKLVTSSTAKS 125 (254)
Q Consensus 69 ~----------------------~~~~~~~~L~~L~l~~C~~L~~-l~p~~~~~~~~L~~L~i~~C~~L~~l~~~~~~~~ 125 (254)
+ .....++.|+.|.+.+. .|++ .+|. +.++.+||.|++++. .|..++ .+...+
T Consensus 330 l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN-~Ltd~c~p~-l~~~~hLKVLhLsyN-rL~~fp-as~~~k 405 (1081)
T KOG0618|consen 330 LAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANN-HLTDSCFPV-LVNFKHLKVLHLSYN-RLNSFP-ASKLRK 405 (1081)
T ss_pred HhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcC-cccccchhh-hccccceeeeeeccc-ccccCC-HHHHhc
Confidence 0 01122334444444442 2222 2243 677889999999875 455554 355678
Q ss_pred ccccceeEEecCCCceeEeecC-------------CCCc--cccccccccceeecccccccceecCCCccccCCCcCeEE
Q 038204 126 LVRLRIMKVCGSRAMTQVVTSE-------------KDGA--EDEIVFSNLKALTLLDLDSLTSFCSGNYTFKFPSLRDLE 190 (254)
Q Consensus 126 l~~L~~L~i~~C~~l~~i~~~~-------------~~~~--~~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~~sL~~L~ 190 (254)
+..|+.|.+++.. ++.++..- .... -....++.|+.++++ |.+|+..-... ....|.|++|+
T Consensus 406 le~LeeL~LSGNk-L~~Lp~tva~~~~L~tL~ahsN~l~~fPe~~~l~qL~~lDlS-~N~L~~~~l~~-~~p~p~LkyLd 482 (1081)
T KOG0618|consen 406 LEELEELNLSGNK-LTTLPDTVANLGRLHTLRAHSNQLLSFPELAQLPQLKVLDLS-CNNLSEVTLPE-ALPSPNLKYLD 482 (1081)
T ss_pred hHHhHHHhcccch-hhhhhHHHHhhhhhHHHhhcCCceeechhhhhcCcceEEecc-cchhhhhhhhh-hCCCcccceee
Confidence 8888888888863 54443210 0000 022234567777776 55666544331 23446788888
Q ss_pred EeCCCCC
Q 038204 191 VIGCPKM 197 (254)
Q Consensus 191 i~~Cp~L 197 (254)
+.+-+++
T Consensus 483 lSGN~~l 489 (1081)
T KOG0618|consen 483 LSGNTRL 489 (1081)
T ss_pred ccCCccc
Confidence 8887754
No 36
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=96.98 E-value=0.00015 Score=68.95 Aligned_cols=130 Identities=21% Similarity=0.266 Sum_probs=62.6
Q ss_pred CCCCcEEEEecccceE-ecCCCCccccccCCCCcccEEeccCCcccccccccCCccccCCCCccEEEEecCCCcceecCC
Q 038204 17 FRNLEILYLSRTSYTE-ILSNEGHSEKHVGKFSQVKHLQPYKLNDLKQLWKQGSKLDFIFTNLEILRVYCCQNLIVLLPS 95 (254)
Q Consensus 17 l~~L~~L~l~~c~l~~-l~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~l~~~~~~~~~~~~~L~~L~l~~C~~L~~l~p~ 95 (254)
++.|+.|++.++.+++ .|+ .+..+++||.|+|.+- .|..+... ....++.||.|.++| ++|+.+ |.
T Consensus 358 ~~~Lq~LylanN~Ltd~c~p-------~l~~~~hLKVLhLsyN-rL~~fpas---~~~kle~LeeL~LSG-NkL~~L-p~ 424 (1081)
T KOG0618|consen 358 HAALQELYLANNHLTDSCFP-------VLVNFKHLKVLHLSYN-RLNSFPAS---KLRKLEELEELNLSG-NKLTTL-PD 424 (1081)
T ss_pred hHHHHHHHHhcCcccccchh-------hhccccceeeeeeccc-ccccCCHH---HHhchHHhHHHhccc-chhhhh-hH
Confidence 4555666666664432 222 1344666666666542 33333221 134455566666666 355555 44
Q ss_pred cccccccccEEEeeccccccccccchhhccccccceeEEecCCCceeEeecCCCCccccccccccceeecccccc
Q 038204 96 SSVSFRNLTDLQVWGCKELMKLVTSSTAKSLVRLRIMKVCGSRAMTQVVTSEKDGAEDEIVFSNLKALTLLDLDS 170 (254)
Q Consensus 96 ~~~~~~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~C~~l~~i~~~~~~~~~~~~~~~~L~~L~l~~c~~ 170 (254)
.+..++.|+.|...+. .+..+| -...+++|+.++++. .++.++..... ..-|+|++|++.+-++
T Consensus 425 tva~~~~L~tL~ahsN-~l~~fP---e~~~l~qL~~lDlS~-N~L~~~~l~~~------~p~p~LkyLdlSGN~~ 488 (1081)
T KOG0618|consen 425 TVANLGRLHTLRAHSN-QLLSFP---ELAQLPQLKVLDLSC-NNLSEVTLPEA------LPSPNLKYLDLSGNTR 488 (1081)
T ss_pred HHHhhhhhHHHhhcCC-ceeech---hhhhcCcceEEeccc-chhhhhhhhhh------CCCcccceeeccCCcc
Confidence 4555666666554332 222222 344566666666643 33443322100 0115666666666554
No 37
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=96.80 E-value=3e-05 Score=67.34 Aligned_cols=104 Identities=20% Similarity=0.266 Sum_probs=50.5
Q ss_pred CCCccEEEEecCCCcceecCCcccccccccEEEeeccccccccccchhhccccccceeEEecCCCceeEeecCCCCcccc
Q 038204 75 FTNLEILRVYCCQNLIVLLPSSSVSFRNLTDLQVWGCKELMKLVTSSTAKSLVRLRIMKVCGSRAMTQVVTSEKDGAEDE 154 (254)
Q Consensus 75 ~~~L~~L~l~~C~~L~~l~p~~~~~~~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~C~~l~~i~~~~~~~~~~~ 154 (254)
+.+|+.|++.. +++..+ |+ +.++..|++|++... .++.++ ....+++++|.+|++.+.. +++++. .+
T Consensus 205 l~~L~~LyL~~-Nki~~l-Pe-f~gcs~L~Elh~g~N-~i~~lp-ae~~~~L~~l~vLDLRdNk-lke~Pd-------e~ 271 (565)
T KOG0472|consen 205 LESLELLYLRR-NKIRFL-PE-FPGCSLLKELHVGEN-QIEMLP-AEHLKHLNSLLVLDLRDNK-LKEVPD-------EI 271 (565)
T ss_pred hhhhHHHHhhh-cccccC-CC-CCccHHHHHHHhccc-HHHhhH-HHHhcccccceeeeccccc-cccCch-------HH
Confidence 44444444443 233333 43 445555555555322 233222 2344566777777776653 566554 44
Q ss_pred ccccccceeecccccccceecCCCccccCCCcCeEEEeCCC
Q 038204 155 IVFSNLKALTLLDLDSLTSFCSGNYTFKFPSLRDLEVIGCP 195 (254)
Q Consensus 155 ~~~~~L~~L~l~~c~~L~~~~~~~~~~~~~sL~~L~i~~Cp 195 (254)
..+.+|.+|++++- .+.+++-.- ..+ .|+.|.+.+-|
T Consensus 272 clLrsL~rLDlSNN-~is~Lp~sL--gnl-hL~~L~leGNP 308 (565)
T KOG0472|consen 272 CLLRSLERLDLSNN-DISSLPYSL--GNL-HLKFLALEGNP 308 (565)
T ss_pred HHhhhhhhhcccCC-ccccCCccc--ccc-eeeehhhcCCc
Confidence 45666777776653 444443321 222 45555555544
No 38
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=96.66 E-value=0.00041 Score=60.45 Aligned_cols=118 Identities=19% Similarity=0.248 Sum_probs=79.4
Q ss_pred CCceechHHHhhCCCCcEEEEecccceEecCCCCccccccCCCCcccEEeccCCcccccccccCCccccCCCCccEEEEe
Q 038204 5 DSACFPLGLLEKFRNLEILYLSRTSYTEILSNEGHSEKHVGKFSQVKHLQPYKLNDLKQLWKQGSKLDFIFTNLEILRVY 84 (254)
Q Consensus 5 ~~~~~P~~~~~~l~~L~~L~l~~c~l~~l~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~l~~~~~~~~~~~~~L~~L~l~ 84 (254)
....||+-++..+++|..|+++++-+.++|. ..+.+-.|+.|+|+.- ..+.++. ......-||.+-.+
T Consensus 422 n~isfv~~~l~~l~kLt~L~L~NN~Ln~LP~-------e~~~lv~Lq~LnlS~N-rFr~lP~----~~y~lq~lEtllas 489 (565)
T KOG0472|consen 422 NKISFVPLELSQLQKLTFLDLSNNLLNDLPE-------EMGSLVRLQTLNLSFN-RFRMLPE----CLYELQTLETLLAS 489 (565)
T ss_pred CccccchHHHHhhhcceeeecccchhhhcch-------hhhhhhhhheeccccc-ccccchH----HHhhHHHHHHHHhc
Confidence 3445788888999999999999997777766 2455777999998654 3333311 11222333333333
Q ss_pred cCCCcceecCCcccccccccEEEeeccccccccccchhhccccccceeEEecCC
Q 038204 85 CCQNLIVLLPSSSVSFRNLTDLQVWGCKELMKLVTSSTAKSLVRLRIMKVCGSR 138 (254)
Q Consensus 85 ~C~~L~~l~p~~~~~~~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~C~ 138 (254)
-.++..+.+.++.++.+|..|++.+. .+..+| +..+++++|++|.+++.+
T Consensus 490 -~nqi~~vd~~~l~nm~nL~tLDL~nN-dlq~IP--p~LgnmtnL~hLeL~gNp 539 (565)
T KOG0472|consen 490 -NNQIGSVDPSGLKNMRNLTTLDLQNN-DLQQIP--PILGNMTNLRHLELDGNP 539 (565)
T ss_pred -cccccccChHHhhhhhhcceeccCCC-chhhCC--hhhccccceeEEEecCCc
Confidence 24556665555778888888888765 466664 377888888988888876
No 39
>PLN03150 hypothetical protein; Provisional
Probab=96.47 E-value=0.0053 Score=57.90 Aligned_cols=64 Identities=17% Similarity=0.074 Sum_probs=36.9
Q ss_pred ccCCCCccEEEEecCCCcceecCCcccccccccEEEeeccccccccccchhhccccccceeEEecCC
Q 038204 72 DFIFTNLEILRVYCCQNLIVLLPSSSVSFRNLTDLQVWGCKELMKLVTSSTAKSLVRLRIMKVCGSR 138 (254)
Q Consensus 72 ~~~~~~L~~L~l~~C~~L~~l~p~~~~~~~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~C~ 138 (254)
...+++|+.|+++++.--..+ |..+..+++|+.|+++++.--..++ ....++++|+.|+++++.
T Consensus 438 i~~L~~L~~L~Ls~N~l~g~i-P~~~~~l~~L~~LdLs~N~lsg~iP--~~l~~L~~L~~L~Ls~N~ 501 (623)
T PLN03150 438 ISKLRHLQSINLSGNSIRGNI-PPSLGSITSLEVLDLSYNSFNGSIP--ESLGQLTSLRILNLNGNS 501 (623)
T ss_pred HhCCCCCCEEECCCCcccCcC-ChHHhCCCCCCEEECCCCCCCCCCc--hHHhcCCCCCEEECcCCc
Confidence 345667777777765322233 4446667777777777663222222 345567777777777664
No 40
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.39 E-value=0.00034 Score=55.46 Aligned_cols=69 Identities=14% Similarity=0.082 Sum_probs=41.3
Q ss_pred cccCCCCccEEEEecCCCcceecCCcc-cccccccEEEeeccccccccccchhhccccccceeEEecCCCc
Q 038204 71 LDFIFTNLEILRVYCCQNLIVLLPSSS-VSFRNLTDLQVWGCKELMKLVTSSTAKSLVRLRIMKVCGSRAM 140 (254)
Q Consensus 71 ~~~~~~~L~~L~l~~C~~L~~l~p~~~-~~~~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~C~~l 140 (254)
....++.++.|.+.+|..+.++.-..+ .-+++|+.|+|++|+++++-. ......+++|+.|.|.+.+.+
T Consensus 120 ~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~G-L~~L~~lknLr~L~l~~l~~v 189 (221)
T KOG3864|consen 120 HLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGG-LACLLKLKNLRRLHLYDLPYV 189 (221)
T ss_pred HHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhH-HHHHHHhhhhHHHHhcCchhh
Confidence 344566666777777776665532111 135677777777777776653 244556667777777666543
No 41
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=96.38 E-value=0.004 Score=37.04 Aligned_cols=33 Identities=27% Similarity=0.270 Sum_probs=14.7
Q ss_pred CccEEEEecCCCcceecCCcccccccccEEEeecc
Q 038204 77 NLEILRVYCCQNLIVLLPSSSVSFRNLTDLQVWGC 111 (254)
Q Consensus 77 ~L~~L~l~~C~~L~~l~p~~~~~~~~L~~L~i~~C 111 (254)
+|++|+++++ +++++.+ .+..+++|+.|+++++
T Consensus 2 ~L~~L~l~~N-~i~~l~~-~l~~l~~L~~L~l~~N 34 (44)
T PF12799_consen 2 NLEELDLSNN-QITDLPP-ELSNLPNLETLNLSNN 34 (44)
T ss_dssp T-SEEEETSS-S-SSHGG-HGTTCTTSSEEEETSS
T ss_pred cceEEEccCC-CCcccCc-hHhCCCCCCEEEecCC
Confidence 4455555543 3444422 2445555555555555
No 42
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.19 E-value=0.00039 Score=55.10 Aligned_cols=68 Identities=19% Similarity=0.258 Sum_probs=34.2
Q ss_pred ccccccEEEeeccccccccccchhhccccccceeEEecCCCceeEeecCCCCccccccccccceeecccccccc
Q 038204 99 SFRNLTDLQVWGCKELMKLVTSSTAKSLVRLRIMKVCGSRAMTQVVTSEKDGAEDEIVFSNLKALTLLDLDSLT 172 (254)
Q Consensus 99 ~~~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~C~~l~~i~~~~~~~~~~~~~~~~L~~L~l~~c~~L~ 172 (254)
.++.++.|.+.+|..+.+.....+.+-.++|+.|+|++|+.+.+- + -.....|++|+.|.|.+++...
T Consensus 123 ~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~----G--L~~L~~lknLr~L~l~~l~~v~ 190 (221)
T KOG3864|consen 123 DLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDG----G--LACLLKLKNLRRLHLYDLPYVA 190 (221)
T ss_pred ccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechh----H--HHHHHHhhhhHHHHhcCchhhh
Confidence 345555566666665555433333344556666666666654221 0 0123345566666666555443
No 43
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=96.00 E-value=0.0043 Score=36.91 Aligned_cols=34 Identities=24% Similarity=0.322 Sum_probs=19.5
Q ss_pred CCCcEEEEecccceEecCCCCccccccCCCCcccEEeccCC
Q 038204 18 RNLEILYLSRTSYTEILSNEGHSEKHVGKFSQVKHLQPYKL 58 (254)
Q Consensus 18 ~~L~~L~l~~c~l~~l~~~~~~~~~~~~~~~~L~~L~L~~~ 58 (254)
++|++|++++++++++++ .++.+++|+.|+++++
T Consensus 1 ~~L~~L~l~~N~i~~l~~-------~l~~l~~L~~L~l~~N 34 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPP-------ELSNLPNLETLNLSNN 34 (44)
T ss_dssp TT-SEEEETSSS-SSHGG-------HGTTCTTSSEEEETSS
T ss_pred CcceEEEccCCCCcccCc-------hHhCCCCCCEEEecCC
Confidence 466777777776665543 2445666666666655
No 44
>PLN03150 hypothetical protein; Provisional
Probab=95.95 E-value=0.015 Score=54.88 Aligned_cols=113 Identities=10% Similarity=0.046 Sum_probs=71.6
Q ss_pred ccEEEEecCCCcceecCCcccccccccEEEeeccccccccccchhhccccccceeEEecCCCceeEeecCCCCccccccc
Q 038204 78 LEILRVYCCQNLIVLLPSSSVSFRNLTDLQVWGCKELMKLVTSSTAKSLVRLRIMKVCGSRAMTQVVTSEKDGAEDEIVF 157 (254)
Q Consensus 78 L~~L~l~~C~~L~~l~p~~~~~~~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~C~~l~~i~~~~~~~~~~~~~~ 157 (254)
++.|++.++. +....|..+..+++|+.|+++++.--..++ .....+++|+.|+++++.--..++. ....+
T Consensus 420 v~~L~L~~n~-L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP--~~~~~l~~L~~LdLs~N~lsg~iP~-------~l~~L 489 (623)
T PLN03150 420 IDGLGLDNQG-LRGFIPNDISKLRHLQSINLSGNSIRGNIP--PSLGSITSLEVLDLSYNSFNGSIPE-------SLGQL 489 (623)
T ss_pred EEEEECCCCC-ccccCCHHHhCCCCCCEEECCCCcccCcCC--hHHhCCCCCCEEECCCCCCCCCCch-------HHhcC
Confidence 6777777753 443335557789999999999875333332 3467889999999999853323332 44568
Q ss_pred cccceeecccccccceecCCCccccCCCcCeEEEeCCCCCcccC
Q 038204 158 SNLKALTLLDLDSLTSFCSGNYTFKFPSLRDLEVIGCPKMKIFT 201 (254)
Q Consensus 158 ~~L~~L~l~~c~~L~~~~~~~~~~~~~sL~~L~i~~Cp~L~~lp 201 (254)
++|+.|++.++.--..++... .....++..+++.+++.+-..|
T Consensus 490 ~~L~~L~Ls~N~l~g~iP~~l-~~~~~~~~~l~~~~N~~lc~~p 532 (623)
T PLN03150 490 TSLRILNLNGNSLSGRVPAAL-GGRLLHRASFNFTDNAGLCGIP 532 (623)
T ss_pred CCCCEEECcCCcccccCChHH-hhccccCceEEecCCccccCCC
Confidence 899999998874222344321 1122456677777776655444
No 45
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=95.92 E-value=0.00068 Score=58.93 Aligned_cols=56 Identities=20% Similarity=0.282 Sum_probs=36.6
Q ss_pred CCCceechHHHhhCCCCcEEEEecccceEecCCCCccccccCCCCcccEEeccCCccccccc
Q 038204 4 DDSACFPLGLLEKFRNLEILYLSRTSYTEILSNEGHSEKHVGKFSQVKHLQPYKLNDLKQLW 65 (254)
Q Consensus 4 ~~~~~~P~~~~~~l~~L~~L~l~~c~l~~l~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~l~ 65 (254)
++-..+|+..++.+++|+.|+|+.++++.|-+. ...++++|-.|.+.+-.+++++.
T Consensus 77 N~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~------AF~GL~~l~~Lvlyg~NkI~~l~ 132 (498)
T KOG4237|consen 77 NQISSIPPGAFKTLHRLRRLDLSKNNISFIAPD------AFKGLASLLSLVLYGNNKITDLP 132 (498)
T ss_pred CCcccCChhhccchhhhceecccccchhhcChH------hhhhhHhhhHHHhhcCCchhhhh
Confidence 455678888888999999999999988776441 12234555555554444454443
No 46
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=95.64 E-value=0.0079 Score=53.29 Aligned_cols=158 Identities=23% Similarity=0.257 Sum_probs=77.7
Q ss_pred hCCCCcEEEEecccceEecCCCCccccccCCC-CcccEEeccCCcccccccccCCccccCCCCccEEEEecCCCcceecC
Q 038204 16 KFRNLEILYLSRTSYTEILSNEGHSEKHVGKF-SQVKHLQPYKLNDLKQLWKQGSKLDFIFTNLEILRVYCCQNLIVLLP 94 (254)
Q Consensus 16 ~l~~L~~L~l~~c~l~~l~~~~~~~~~~~~~~-~~L~~L~L~~~~~L~~l~~~~~~~~~~~~~L~~L~l~~C~~L~~l~p 94 (254)
.++.++.|.+.+..+.++... .+.+ ++|+.|++.+- +++.+. .....+++|+.|.+.++ ++.++ |
T Consensus 114 ~~~~l~~L~l~~n~i~~i~~~-------~~~~~~nL~~L~l~~N-~i~~l~----~~~~~l~~L~~L~l~~N-~l~~l-~ 179 (394)
T COG4886 114 ELTNLTSLDLDNNNITDIPPL-------IGLLKSNLKELDLSDN-KIESLP----SPLRNLPNLKNLDLSFN-DLSDL-P 179 (394)
T ss_pred cccceeEEecCCcccccCccc-------cccchhhccccccccc-chhhhh----hhhhccccccccccCCc-hhhhh-h
Confidence 456677777777766666551 2223 26777777552 333321 11455677777777765 34444 2
Q ss_pred CcccccccccEEEeeccccccccccchhhccccccceeEEecCCCceeEeecCC--------CC-------ccccccccc
Q 038204 95 SSSVSFRNLTDLQVWGCKELMKLVTSSTAKSLVRLRIMKVCGSRAMTQVVTSEK--------DG-------AEDEIVFSN 159 (254)
Q Consensus 95 ~~~~~~~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~C~~l~~i~~~~~--------~~-------~~~~~~~~~ 159 (254)
......++|+.|++++. ++..++. .......|++|.+++...++.+..... .. ......+++
T Consensus 180 ~~~~~~~~L~~L~ls~N-~i~~l~~--~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~l~~ 256 (394)
T COG4886 180 KLLSNLSNLNNLDLSGN-KISDLPP--EIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLEDLPESIGNLSN 256 (394)
T ss_pred hhhhhhhhhhheeccCC-ccccCch--hhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCceeeeccchhccccc
Confidence 21235666777766655 3444432 112233355555555532211110000 00 012233455
Q ss_pred cceeecccccccceecCCCccccCCCcCeEEEeCC
Q 038204 160 LKALTLLDLDSLTSFCSGNYTFKFPSLRDLEVIGC 194 (254)
Q Consensus 160 L~~L~l~~c~~L~~~~~~~~~~~~~sL~~L~i~~C 194 (254)
++.|++.+. .+.+++. .....+++.|++.+-
T Consensus 257 l~~L~~s~n-~i~~i~~---~~~~~~l~~L~~s~n 287 (394)
T COG4886 257 LETLDLSNN-QISSISS---LGSLTNLRELDLSGN 287 (394)
T ss_pred cceeccccc-ccccccc---ccccCccCEEeccCc
Confidence 666666654 4444443 234566777776653
No 47
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=95.62 E-value=0.003 Score=53.35 Aligned_cols=128 Identities=16% Similarity=0.129 Sum_probs=79.4
Q ss_pred CCCCcEEEEecccceEecCCCCccccccCCCCcccEEeccCCcccccccccCCccccCCCCccEEEEecCCCcceecCCc
Q 038204 17 FRNLEILYLSRTSYTEILSNEGHSEKHVGKFSQVKHLQPYKLNDLKQLWKQGSKLDFIFTNLEILRVYCCQNLIVLLPSS 96 (254)
Q Consensus 17 l~~L~~L~l~~c~l~~l~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~l~~~~~~~~~~~~~L~~L~l~~C~~L~~l~p~~ 96 (254)
.+.|+.|+++++.++++-+ .+.-.|.++.|+++.. .+..+.. ...+++|+.|++++. .|..+ ..+
T Consensus 283 Wq~LtelDLS~N~I~~iDE-------SvKL~Pkir~L~lS~N-~i~~v~n-----La~L~~L~~LDLS~N-~Ls~~-~Gw 347 (490)
T KOG1259|consen 283 WQELTELDLSGNLITQIDE-------SVKLAPKLRRLILSQN-RIRTVQN-----LAELPQLQLLDLSGN-LLAEC-VGW 347 (490)
T ss_pred Hhhhhhccccccchhhhhh-------hhhhccceeEEecccc-ceeeehh-----hhhcccceEeecccc-hhHhh-hhh
Confidence 3678899999886665432 2445889999988764 3433311 456888899988873 34433 222
Q ss_pred ccccccccEEEeeccccccccccchhhccccccceeEEecCCCceeEeecCCCCccccccccccceeeccccc
Q 038204 97 SVSFRNLTDLQVWGCKELMKLVTSSTAKSLVRLRIMKVCGSRAMTQVVTSEKDGAEDEIVFSNLKALTLLDLD 169 (254)
Q Consensus 97 ~~~~~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~C~~l~~i~~~~~~~~~~~~~~~~L~~L~l~~c~ 169 (254)
-..+-|.+.|.+.+. .++++ +....+=+|..|++++.. ++++- +...++.+|+|+.+.+.+.|
T Consensus 348 h~KLGNIKtL~La~N-~iE~L---SGL~KLYSLvnLDl~~N~-Ie~ld-----eV~~IG~LPCLE~l~L~~NP 410 (490)
T KOG1259|consen 348 HLKLGNIKTLKLAQN-KIETL---SGLRKLYSLVNLDLSSNQ-IEELD-----EVNHIGNLPCLETLRLTGNP 410 (490)
T ss_pred HhhhcCEeeeehhhh-hHhhh---hhhHhhhhheeccccccc-hhhHH-----HhcccccccHHHHHhhcCCC
Confidence 345677788877654 34444 345566667777777653 32221 11245678888888887764
No 48
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=95.46 E-value=0.11 Score=37.85 Aligned_cols=88 Identities=14% Similarity=0.106 Sum_probs=40.5
Q ss_pred eechHHHhhCCCCcEEEEecccceEecCCCCccccccCCCCcccEEeccCCcccccccccCCccccCCCCccEEEEecCC
Q 038204 8 CFPLGLLEKFRNLEILYLSRTSYTEILSNEGHSEKHVGKFSQVKHLQPYKLNDLKQLWKQGSKLDFIFTNLEILRVYCCQ 87 (254)
Q Consensus 8 ~~P~~~~~~l~~L~~L~l~~c~l~~l~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~l~~~~~~~~~~~~~L~~L~l~~C~ 87 (254)
.++.+.+..+.+|+.+.+.+ .++.+.. .....+++|+.+.+.+ .++.+.... ...+++|+++.+.+
T Consensus 2 ~i~~~~F~~~~~l~~i~~~~-~~~~I~~------~~F~~~~~l~~i~~~~--~~~~i~~~~---F~~~~~l~~i~~~~-- 67 (129)
T PF13306_consen 2 SIGNNAFYNCSNLESITFPN-TIKKIGE------NAFSNCTSLKSINFPN--NLTSIGDNA---FSNCKSLESITFPN-- 67 (129)
T ss_dssp EE-TTTTTT-TT--EEEETS-T--EE-T------TTTTT-TT-SEEEESS--TTSCE-TTT---TTT-TT-EEEEETS--
T ss_pred EECHHHHhCCCCCCEEEECC-CeeEeCh------hhcccccccccccccc--cccccceee---eecccccccccccc--
Confidence 35566666777788777765 3444433 1123456777777755 355543222 23455677777754
Q ss_pred CcceecCCcccccccccEEEee
Q 038204 88 NLIVLLPSSSVSFRNLTDLQVW 109 (254)
Q Consensus 88 ~L~~l~p~~~~~~~~L~~L~i~ 109 (254)
.+..+.......+++|+.+.+.
T Consensus 68 ~~~~i~~~~F~~~~~l~~i~~~ 89 (129)
T PF13306_consen 68 NLKSIGDNAFSNCTNLKNIDIP 89 (129)
T ss_dssp TT-EE-TTTTTT-TTECEEEET
T ss_pred cccccccccccccccccccccC
Confidence 4555533334446677777663
No 49
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=95.45 E-value=0.0021 Score=54.24 Aligned_cols=130 Identities=15% Similarity=0.141 Sum_probs=84.4
Q ss_pred CCCCcccEEeccCCcccccccccCCccccCCCCccEEEEecCCCcceecCCcccccccccEEEeeccccccccccchhhc
Q 038204 45 GKFSQVKHLQPYKLNDLKQLWKQGSKLDFIFTNLEILRVYCCQNLIVLLPSSSVSFRNLTDLQVWGCKELMKLVTSSTAK 124 (254)
Q Consensus 45 ~~~~~L~~L~L~~~~~L~~l~~~~~~~~~~~~~L~~L~l~~C~~L~~l~p~~~~~~~~L~~L~i~~C~~L~~l~~~~~~~ 124 (254)
.....|+++++++. .++.+.. .....|.++.|.+++. .+..+ .. ...+++|..|++++.. |..+. .+-.
T Consensus 281 dTWq~LtelDLS~N-~I~~iDE----SvKL~Pkir~L~lS~N-~i~~v-~n-La~L~~L~~LDLS~N~-Ls~~~--Gwh~ 349 (490)
T KOG1259|consen 281 DTWQELTELDLSGN-LITQIDE----SVKLAPKLRRLILSQN-RIRTV-QN-LAELPQLQLLDLSGNL-LAECV--GWHL 349 (490)
T ss_pred chHhhhhhcccccc-chhhhhh----hhhhccceeEEecccc-ceeee-hh-hhhcccceEeecccch-hHhhh--hhHh
Confidence 34678899998763 4455422 2456889999999974 44444 23 6678999999998753 44332 2334
Q ss_pred cccccceeEEecCCCceeEeecCCCCccccccccccceeecccccccceecCCCccccCCCcCeEEEeCCC
Q 038204 125 SLVRLRIMKVCGSRAMTQVVTSEKDGAEDEIVFSNLKALTLLDLDSLTSFCSGNYTFKFPSLRDLEVIGCP 195 (254)
Q Consensus 125 ~l~~L~~L~i~~C~~l~~i~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~~sL~~L~i~~Cp 195 (254)
.+-+.++|.++... ++.+. ....+-+|..|++.+. +++.+..-.....+|.|+++.+.+.|
T Consensus 350 KLGNIKtL~La~N~-iE~LS--------GL~KLYSLvnLDl~~N-~Ie~ldeV~~IG~LPCLE~l~L~~NP 410 (490)
T KOG1259|consen 350 KLGNIKTLKLAQNK-IETLS--------GLRKLYSLVNLDLSSN-QIEELDEVNHIGNLPCLETLRLTGNP 410 (490)
T ss_pred hhcCEeeeehhhhh-Hhhhh--------hhHhhhhheecccccc-chhhHHHhcccccccHHHHHhhcCCC
Confidence 56667888887753 43332 2234567778887764 44444433334678999999998887
No 50
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.03 E-value=0.015 Score=49.07 Aligned_cols=95 Identities=21% Similarity=0.300 Sum_probs=52.8
Q ss_pred cccEEEeeccccccccccchhhccccccceeEEecCCCceeEeecCCCCccccccccccceeecccccccceecCCCccc
Q 038204 102 NLTDLQVWGCKELMKLVTSSTAKSLVRLRIMKVCGSRAMTQVVTSEKDGAEDEIVFSNLKALTLLDLDSLTSFCSGNYTF 181 (254)
Q Consensus 102 ~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~C~~l~~i~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~~ 181 (254)
-++.|+..+|+......-....+-+|++..+-+.+|+ ++..-... ....||.+..|.+.. .++.++..-....
T Consensus 174 ~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~P-lK~~s~ek-----~se~~p~~~~LnL~~-~~idswasvD~Ln 246 (418)
T KOG2982|consen 174 EVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGP-LKTESSEK-----GSEPFPSLSCLNLGA-NNIDSWASVDALN 246 (418)
T ss_pred hhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCc-ccchhhcc-----cCCCCCcchhhhhcc-cccccHHHHHHHc
Confidence 4455555555544333222334556777777777776 33332211 223456665555543 2444444332335
Q ss_pred cCCCcCeEEEeCCCCCcccCCC
Q 038204 182 KFPSLRDLEVIGCPKMKIFTTG 203 (254)
Q Consensus 182 ~~~sL~~L~i~~Cp~L~~lp~~ 203 (254)
.||+|..|.+.+-|-...+..+
T Consensus 247 ~f~~l~dlRv~~~Pl~d~l~~~ 268 (418)
T KOG2982|consen 247 GFPQLVDLRVSENPLSDPLRGG 268 (418)
T ss_pred CCchhheeeccCCcccccccCC
Confidence 6888888888888877766544
No 51
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=94.75 E-value=0.021 Score=49.98 Aligned_cols=94 Identities=19% Similarity=0.249 Sum_probs=68.5
Q ss_pred CceechHHHhhCCCCcEEEEecccceEecCCCCccccccCCCCcccEEeccCCcccccccccCCccccCCCCccEEEEec
Q 038204 6 SACFPLGLLEKFRNLEILYLSRTSYTEILSNEGHSEKHVGKFSQVKHLQPYKLNDLKQLWKQGSKLDFIFTNLEILRVYC 85 (254)
Q Consensus 6 ~~~~P~~~~~~l~~L~~L~l~~c~l~~l~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~l~~~~~~~~~~~~~L~~L~l~~ 85 (254)
..+.|.-.++++++|++|++++++++.+-+. .......+++|.|.+ .+++.+-.+ ....+..|+.|++.+
T Consensus 262 d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~------aFe~~a~l~eL~L~~-N~l~~v~~~---~f~~ls~L~tL~L~~ 331 (498)
T KOG4237|consen 262 DSICPAKCFKKLPNLRKLNLSNNKITRIEDG------AFEGAAELQELYLTR-NKLEFVSSG---MFQGLSGLKTLSLYD 331 (498)
T ss_pred CCcChHHHHhhcccceEeccCCCccchhhhh------hhcchhhhhhhhcCc-chHHHHHHH---hhhccccceeeeecC
Confidence 3456777788999999999999988766431 233577888888865 356655332 245678899999998
Q ss_pred CCCcceecCCcccccccccEEEeec
Q 038204 86 CQNLIVLLPSSSVSFRNLTDLQVWG 110 (254)
Q Consensus 86 C~~L~~l~p~~~~~~~~L~~L~i~~ 110 (254)
++++.+.|..+..+.+|..|.+-+
T Consensus 332 -N~it~~~~~aF~~~~~l~~l~l~~ 355 (498)
T KOG4237|consen 332 -NQITTVAPGAFQTLFSLSTLNLLS 355 (498)
T ss_pred -CeeEEEecccccccceeeeeehcc
Confidence 468888777677778888888754
No 52
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=94.54 E-value=0.026 Score=26.20 Aligned_cols=17 Identities=24% Similarity=0.487 Sum_probs=9.1
Q ss_pred CCcCeEEEeCCCCCcccC
Q 038204 184 PSLRDLEVIGCPKMKIFT 201 (254)
Q Consensus 184 ~sL~~L~i~~Cp~L~~lp 201 (254)
++|+.|++++|. ++.+|
T Consensus 1 ~~L~~L~l~~n~-L~~lP 17 (17)
T PF13504_consen 1 PNLRTLDLSNNR-LTSLP 17 (17)
T ss_dssp TT-SEEEETSS---SSE-
T ss_pred CccCEEECCCCC-CCCCc
Confidence 457777777776 66665
No 53
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=94.30 E-value=0.036 Score=49.13 Aligned_cols=89 Identities=18% Similarity=0.235 Sum_probs=59.4
Q ss_pred CCCcccEEeccCCcccccccccCCccccCC-CCccEEEEecCCCcceecCCcccccccccEEEeeccccccccccchhhc
Q 038204 46 KFSQVKHLQPYKLNDLKQLWKQGSKLDFIF-TNLEILRVYCCQNLIVLLPSSSVSFRNLTDLQVWGCKELMKLVTSSTAK 124 (254)
Q Consensus 46 ~~~~L~~L~L~~~~~L~~l~~~~~~~~~~~-~~L~~L~l~~C~~L~~l~p~~~~~~~~L~~L~i~~C~~L~~l~~~~~~~ 124 (254)
.++.++.|.+.+- .+.++.. ....+ ++|+.|++.+- ++..+ |..+..+++|+.|.+.+++ +.+++. ...
T Consensus 114 ~~~~l~~L~l~~n-~i~~i~~----~~~~~~~nL~~L~l~~N-~i~~l-~~~~~~l~~L~~L~l~~N~-l~~l~~--~~~ 183 (394)
T COG4886 114 ELTNLTSLDLDNN-NITDIPP----LIGLLKSNLKELDLSDN-KIESL-PSPLRNLPNLKNLDLSFND-LSDLPK--LLS 183 (394)
T ss_pred cccceeEEecCCc-ccccCcc----ccccchhhccccccccc-chhhh-hhhhhccccccccccCCch-hhhhhh--hhh
Confidence 4567888888553 3444322 13344 38999999874 56665 3347889999999999985 555533 223
Q ss_pred cccccceeEEecCCCceeEee
Q 038204 125 SLVRLRIMKVCGSRAMTQVVT 145 (254)
Q Consensus 125 ~l~~L~~L~i~~C~~l~~i~~ 145 (254)
.++.|+.|++++.. +..++.
T Consensus 184 ~~~~L~~L~ls~N~-i~~l~~ 203 (394)
T COG4886 184 NLSNLNNLDLSGNK-ISDLPP 203 (394)
T ss_pred hhhhhhheeccCCc-cccCch
Confidence 78889999999874 544443
No 54
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.29 E-value=0.0028 Score=52.94 Aligned_cols=62 Identities=19% Similarity=0.166 Sum_probs=31.6
Q ss_pred CCCCccEEEEecCCCcceecCCcccccccccEEEeeccccccccccchhhccccccceeEEecCCC
Q 038204 74 IFTNLEILRVYCCQNLIVLLPSSSVSFRNLTDLQVWGCKELMKLVTSSTAKSLVRLRIMKVCGSRA 139 (254)
Q Consensus 74 ~~~~L~~L~l~~C~~L~~l~p~~~~~~~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~C~~ 139 (254)
.++.||.|.++- +++..+.| +..|++|++|+++.. .+.++.....+.++|+|+.|.|...+-
T Consensus 39 kMp~lEVLsLSv-NkIssL~p--l~rCtrLkElYLRkN-~I~sldEL~YLknlpsLr~LWL~ENPC 100 (388)
T KOG2123|consen 39 KMPLLEVLSLSV-NKISSLAP--LQRCTRLKELYLRKN-CIESLDELEYLKNLPSLRTLWLDENPC 100 (388)
T ss_pred hcccceeEEeec-cccccchh--HHHHHHHHHHHHHhc-ccccHHHHHHHhcCchhhhHhhccCCc
Confidence 345555555442 23333322 455666666666432 233333334556677777777766543
No 55
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=92.81 E-value=0.044 Score=45.26 Aligned_cols=12 Identities=33% Similarity=0.916 Sum_probs=5.2
Q ss_pred cccccEEEeecc
Q 038204 100 FRNLTDLQVWGC 111 (254)
Q Consensus 100 ~~~L~~L~i~~C 111 (254)
++||..|++.+|
T Consensus 115 l~nL~~Ldl~n~ 126 (260)
T KOG2739|consen 115 LENLKSLDLFNC 126 (260)
T ss_pred hcchhhhhcccC
Confidence 344444444444
No 56
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=92.40 E-value=0.25 Score=39.62 Aligned_cols=90 Identities=13% Similarity=0.117 Sum_probs=53.1
Q ss_pred cCCCCccEEEEecCCCcceecCCcccccccccEEEeeccccccccccchhhccccccceeEEecCCCceeEeecCCCCcc
Q 038204 73 FIFTNLEILRVYCCQNLIVLLPSSSVSFRNLTDLQVWGCKELMKLVTSSTAKSLVRLRIMKVCGSRAMTQVVTSEKDGAE 152 (254)
Q Consensus 73 ~~~~~L~~L~l~~C~~L~~l~p~~~~~~~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~C~~l~~i~~~~~~~~~ 152 (254)
+.++.|.+|.+.+ +.++.+.|.-...+|+|+.|.+.+.. +..+.-..-...+|+|+.|.+-+.+- +.- ...-.-
T Consensus 61 p~l~rL~tLll~n-NrIt~I~p~L~~~~p~l~~L~LtnNs-i~~l~dl~pLa~~p~L~~Ltll~Npv-~~k---~~YR~y 134 (233)
T KOG1644|consen 61 PHLPRLHTLLLNN-NRITRIDPDLDTFLPNLKTLILTNNS-IQELGDLDPLASCPKLEYLTLLGNPV-EHK---KNYRLY 134 (233)
T ss_pred CCccccceEEecC-CcceeeccchhhhccccceEEecCcc-hhhhhhcchhccCCccceeeecCCch-hcc---cCceeE
Confidence 4567778887766 46777766644557888888887642 22222223345677888887776652 110 000001
Q ss_pred ccccccccceeecccc
Q 038204 153 DEIVFSNLKALTLLDL 168 (254)
Q Consensus 153 ~~~~~~~L~~L~l~~c 168 (254)
....+|+|+.|++.+-
T Consensus 135 vl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 135 VLYKLPSLRTLDFQKV 150 (233)
T ss_pred EEEecCcceEeehhhh
Confidence 2345788888888765
No 57
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=92.29 E-value=0.02 Score=52.33 Aligned_cols=162 Identities=21% Similarity=0.158 Sum_probs=81.5
Q ss_pred CCCceechHHHhhCCCCcEEEEecccceEecCCCCccccccCCCCcccEEeccCCcccccccccCCccccCCCCccEEEE
Q 038204 4 DDSACFPLGLLEKFRNLEILYLSRTSYTEILSNEGHSEKHVGKFSQVKHLQPYKLNDLKQLWKQGSKLDFIFTNLEILRV 83 (254)
Q Consensus 4 ~~~~~~P~~~~~~l~~L~~L~l~~c~l~~l~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~l~~~~~~~~~~~~~L~~L~l 83 (254)
|.-.++|..+ ..+..|.+|+|+.+.+..++. .+ .+--|+.|-+.+ .+++.+..+ ....+.|..|+.
T Consensus 108 n~~r~ip~~i-~~L~~lt~l~ls~NqlS~lp~-------~l-C~lpLkvli~sN-Nkl~~lp~~----ig~~~tl~~ld~ 173 (722)
T KOG0532|consen 108 NCIRTIPEAI-CNLEALTFLDLSSNQLSHLPD-------GL-CDLPLKVLIVSN-NKLTSLPEE----IGLLPTLAHLDV 173 (722)
T ss_pred ccceecchhh-hhhhHHHHhhhccchhhcCCh-------hh-hcCcceeEEEec-CccccCCcc----cccchhHHHhhh
Confidence 4444455543 356666666666665444433 11 122355555544 244444221 334556666666
Q ss_pred ecCCCcceecCCcccccccccEEEeeccccccccccchhhccccccceeEEecCCCceeEeecCCCCcccccccccccee
Q 038204 84 YCCQNLIVLLPSSSVSFRNLTDLQVWGCKELMKLVTSSTAKSLVRLRIMKVCGSRAMTQVVTSEKDGAEDEIVFSNLKAL 163 (254)
Q Consensus 84 ~~C~~L~~l~p~~~~~~~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~C~~l~~i~~~~~~~~~~~~~~~~L~~L 163 (254)
+.| ++..+ |..+..+.+|+.|.+++-. +.+++. -...| .|..|+++ |+++..|+. ....+..|+.|
T Consensus 174 s~n-ei~sl-psql~~l~slr~l~vrRn~-l~~lp~--El~~L-pLi~lDfS-cNkis~iPv-------~fr~m~~Lq~l 239 (722)
T KOG0532|consen 174 SKN-EIQSL-PSQLGYLTSLRDLNVRRNH-LEDLPE--ELCSL-PLIRLDFS-CNKISYLPV-------DFRKMRHLQVL 239 (722)
T ss_pred hhh-hhhhc-hHHhhhHHHHHHHHHhhhh-hhhCCH--HHhCC-ceeeeecc-cCceeecch-------hhhhhhhheee
Confidence 654 44555 3336666677777666543 344432 12222 35566654 455666654 44445667777
Q ss_pred ecccccccceecCCCccc-cCCCcCeEEEeCC
Q 038204 164 TLLDLDSLTSFCSGNYTF-KFPSLRDLEVIGC 194 (254)
Q Consensus 164 ~l~~c~~L~~~~~~~~~~-~~~sL~~L~i~~C 194 (254)
.+.+. -|++-+...+.. ...-.++|++..|
T Consensus 240 ~LenN-PLqSPPAqIC~kGkVHIFKyL~~qA~ 270 (722)
T KOG0532|consen 240 QLENN-PLQSPPAQICEKGKVHIFKYLSTQAC 270 (722)
T ss_pred eeccC-CCCCChHHHHhccceeeeeeecchhc
Confidence 77654 344433221111 1223577888888
No 58
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=92.04 E-value=0.029 Score=48.25 Aligned_cols=39 Identities=18% Similarity=0.114 Sum_probs=20.7
Q ss_pred hCCCCcEEEEecc--cceEecCCCCccccccCCCCcccEEeccCC
Q 038204 16 KFRNLEILYLSRT--SYTEILSNEGHSEKHVGKFSQVKHLQPYKL 58 (254)
Q Consensus 16 ~l~~L~~L~l~~c--~l~~l~~~~~~~~~~~~~~~~L~~L~L~~~ 58 (254)
..+.|++|+|+++ +-+.+...+ .-+..+..|++|.|.+|
T Consensus 90 ~~~~L~~ldLSDNA~G~~g~~~l~----~ll~s~~~L~eL~L~N~ 130 (382)
T KOG1909|consen 90 GCPKLQKLDLSDNAFGPKGIRGLE----ELLSSCTDLEELYLNNC 130 (382)
T ss_pred cCCceeEeeccccccCccchHHHH----HHHHhccCHHHHhhhcC
Confidence 4567777777777 222222111 11233666777776665
No 59
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=91.48 E-value=0.12 Score=26.73 Aligned_cols=17 Identities=35% Similarity=0.855 Sum_probs=13.6
Q ss_pred CCCcCeEEEeCCCCCcc
Q 038204 183 FPSLRDLEVIGCPKMKI 199 (254)
Q Consensus 183 ~~sL~~L~i~~Cp~L~~ 199 (254)
+|+|++|++++|++++.
T Consensus 1 c~~L~~L~l~~C~~itD 17 (26)
T smart00367 1 CPNLRELDLSGCTNITD 17 (26)
T ss_pred CCCCCEeCCCCCCCcCH
Confidence 47788889999988764
No 60
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=91.42 E-value=0.09 Score=43.44 Aligned_cols=118 Identities=18% Similarity=0.205 Sum_probs=72.8
Q ss_pred ccCCCCccEEEEecCCCcceecCCcccccccccEEEeeccccccccccchhhccccccceeEEecCCCceeEeecCCCCc
Q 038204 72 DFIFTNLEILRVYCCQNLIVLLPSSSVSFRNLTDLQVWGCKELMKLVTSSTAKSLVRLRIMKVCGSRAMTQVVTSEKDGA 151 (254)
Q Consensus 72 ~~~~~~L~~L~l~~C~~L~~l~p~~~~~~~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~C~~l~~i~~~~~~~~ 151 (254)
...+..|+.|++.+|.- +.+ . ....+|+|+.|.++.-..-........+..+|+|++|.+++.. ++.+-+ .
T Consensus 39 ~d~~~~le~ls~~n~gl-tt~-~-~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nk-i~~lst-----l 109 (260)
T KOG2739|consen 39 TDEFVELELLSVINVGL-TTL-T-NFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNK-IKDLST-----L 109 (260)
T ss_pred cccccchhhhhhhccce-eec-c-cCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCc-cccccc-----c
Confidence 34567888888887743 333 1 2556889999999765211122222345667999999999875 332211 0
Q ss_pred cccccccccceeecccccccc--eecCCCccccCCCcCeEEEeCCCCCcc
Q 038204 152 EDEIVFSNLKALTLLDLDSLT--SFCSGNYTFKFPSLRDLEVIGCPKMKI 199 (254)
Q Consensus 152 ~~~~~~~~L~~L~l~~c~~L~--~~~~~~~~~~~~sL~~L~i~~Cp~L~~ 199 (254)
.....+.+|..|++.+|+-.. +-.. .....+|+|++|+-.++..-+.
T Consensus 110 ~pl~~l~nL~~Ldl~n~~~~~l~dyre-~vf~ll~~L~~LD~~dv~~~Ea 158 (260)
T KOG2739|consen 110 RPLKELENLKSLDLFNCSVTNLDDYRE-KVFLLLPSLKYLDGCDVDGEEA 158 (260)
T ss_pred chhhhhcchhhhhcccCCccccccHHH-HHHHHhhhhccccccccCCccc
Confidence 134457788899999886444 2111 1234578999998888765544
No 61
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=91.00 E-value=0.12 Score=26.72 Aligned_cols=18 Identities=28% Similarity=0.575 Sum_probs=12.3
Q ss_pred cccccEEEeecccccccc
Q 038204 100 FRNLTDLQVWGCKELMKL 117 (254)
Q Consensus 100 ~~~L~~L~i~~C~~L~~l 117 (254)
+++|++|+|++|+++++.
T Consensus 1 c~~L~~L~l~~C~~itD~ 18 (26)
T smart00367 1 CPNLRELDLSGCTNITDE 18 (26)
T ss_pred CCCCCEeCCCCCCCcCHH
Confidence 356777777777776664
No 62
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=90.53 E-value=0.1 Score=46.71 Aligned_cols=106 Identities=16% Similarity=0.136 Sum_probs=61.2
Q ss_pred hhCCCCcEEEEecccceEecCCCCccccccCCCCcccEEeccCCcccccccccCCccccCCCCccEEEEecCCCcceecC
Q 038204 15 EKFRNLEILYLSRTSYTEILSNEGHSEKHVGKFSQVKHLQPYKLNDLKQLWKQGSKLDFIFTNLEILRVYCCQNLIVLLP 94 (254)
Q Consensus 15 ~~l~~L~~L~l~~c~l~~l~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~l~~~~~~~~~~~~~L~~L~l~~C~~L~~l~p 94 (254)
..+++|+.|++.+++++.+.. .+..+++|++|++++- .++++.. ...++.|+.|++.++ .+..+ .
T Consensus 92 ~~~~~l~~l~l~~n~i~~i~~-------~l~~~~~L~~L~ls~N-~I~~i~~-----l~~l~~L~~L~l~~N-~i~~~-~ 156 (414)
T KOG0531|consen 92 SKLKSLEALDLYDNKIEKIEN-------LLSSLVNLQVLDLSFN-KITKLEG-----LSTLTLLKELNLSGN-LISDI-S 156 (414)
T ss_pred ccccceeeeeccccchhhccc-------chhhhhcchheecccc-ccccccc-----hhhccchhhheeccC-cchhc-c
Confidence 346677777777776655433 1345778888887652 4444422 344666788887774 34443 2
Q ss_pred CcccccccccEEEeeccccccccccchhhccccccceeEEecCC
Q 038204 95 SSSVSFRNLTDLQVWGCKELMKLVTSSTAKSLVRLRIMKVCGSR 138 (254)
Q Consensus 95 ~~~~~~~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~C~ 138 (254)
. ...+++|+.+++.++.. ..+.... ...+++|+.+.+.+..
T Consensus 157 ~-~~~l~~L~~l~l~~n~i-~~ie~~~-~~~~~~l~~l~l~~n~ 197 (414)
T KOG0531|consen 157 G-LESLKSLKLLDLSYNRI-VDIENDE-LSELISLEELDLGGNS 197 (414)
T ss_pred C-CccchhhhcccCCcchh-hhhhhhh-hhhccchHHHhccCCc
Confidence 2 44577777777777642 2221101 3566777777776654
No 63
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=90.36 E-value=0.21 Score=24.66 Aligned_cols=14 Identities=36% Similarity=0.375 Sum_probs=6.7
Q ss_pred ccEEEEecCCCccee
Q 038204 78 LEILRVYCCQNLIVL 92 (254)
Q Consensus 78 L~~L~l~~C~~L~~l 92 (254)
|++|++++| +++.+
T Consensus 2 L~~Ldls~n-~l~~i 15 (22)
T PF00560_consen 2 LEYLDLSGN-NLTSI 15 (22)
T ss_dssp ESEEEETSS-EESEE
T ss_pred ccEEECCCC-cCEeC
Confidence 445555554 44444
No 64
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=90.02 E-value=2.1 Score=31.01 Aligned_cols=79 Identities=11% Similarity=0.111 Sum_probs=32.0
Q ss_pred CCCcccEEeccCCcccccccccCCccccCCCCccEEEEecCCCcceecCCcccccccccEEEeeccccccccccchhhcc
Q 038204 46 KFSQVKHLQPYKLNDLKQLWKQGSKLDFIFTNLEILRVYCCQNLIVLLPSSSVSFRNLTDLQVWGCKELMKLVTSSTAKS 125 (254)
Q Consensus 46 ~~~~L~~L~L~~~~~L~~l~~~~~~~~~~~~~L~~L~l~~C~~L~~l~p~~~~~~~~L~~L~i~~C~~L~~l~~~~~~~~ 125 (254)
.+.+|+.+.+.+ .++.+.... ...+++|+.+.+.+ +++.+....+..+++++.+.+.+ .+..+.. .....
T Consensus 10 ~~~~l~~i~~~~--~~~~I~~~~---F~~~~~l~~i~~~~--~~~~i~~~~F~~~~~l~~i~~~~--~~~~i~~-~~F~~ 79 (129)
T PF13306_consen 10 NCSNLESITFPN--TIKKIGENA---FSNCTSLKSINFPN--NLTSIGDNAFSNCKSLESITFPN--NLKSIGD-NAFSN 79 (129)
T ss_dssp T-TT--EEEETS--T--EE-TTT---TTT-TT-SEEEESS--TTSCE-TTTTTT-TT-EEEEETS--TT-EE-T-TTTTT
T ss_pred CCCCCCEEEECC--CeeEeChhh---cccccccccccccc--cccccceeeeecccccccccccc--ccccccc-ccccc
Confidence 355677776653 344443222 23455666666654 35555333344555666666643 3333322 22334
Q ss_pred ccccceeEE
Q 038204 126 LVRLRIMKV 134 (254)
Q Consensus 126 l~~L~~L~i 134 (254)
+++|+.+.+
T Consensus 80 ~~~l~~i~~ 88 (129)
T PF13306_consen 80 CTNLKNIDI 88 (129)
T ss_dssp -TTECEEEE
T ss_pred ccccccccc
Confidence 555555555
No 65
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=89.97 E-value=0.66 Score=37.22 Aligned_cols=89 Identities=17% Similarity=0.198 Sum_probs=45.8
Q ss_pred ccccccccEEEeeccccccccccchhhccccccceeEEecCCCceeEeecCCCCccccccccccceeeccccccc--cee
Q 038204 97 SVSFRNLTDLQVWGCKELMKLVTSSTAKSLVRLRIMKVCGSRAMTQVVTSEKDGAEDEIVFSNLKALTLLDLDSL--TSF 174 (254)
Q Consensus 97 ~~~~~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~C~~l~~i~~~~~~~~~~~~~~~~L~~L~l~~c~~L--~~~ 174 (254)
+..+++|..|.+.+. +++.+.+ .....+|+|+.|.+.+.. +.++-.. .....+|+|++|.+.+-|-- +..
T Consensus 60 lp~l~rL~tLll~nN-rIt~I~p-~L~~~~p~l~~L~LtnNs-i~~l~dl-----~pLa~~p~L~~Ltll~Npv~~k~~Y 131 (233)
T KOG1644|consen 60 LPHLPRLHTLLLNNN-RITRIDP-DLDTFLPNLKTLILTNNS-IQELGDL-----DPLASCPKLEYLTLLGNPVEHKKNY 131 (233)
T ss_pred CCCccccceEEecCC-cceeecc-chhhhccccceEEecCcc-hhhhhhc-----chhccCCccceeeecCCchhcccCc
Confidence 445667777776543 4555433 334456677777776653 3222111 13345677777776654311 110
Q ss_pred cCCCccccCCCcCeEEEeCC
Q 038204 175 CSGNYTFKFPSLRDLEVIGC 194 (254)
Q Consensus 175 ~~~~~~~~~~sL~~L~i~~C 194 (254)
.. .....+|+|+.|+..+-
T Consensus 132 R~-yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 132 RL-YVLYKLPSLRTLDFQKV 150 (233)
T ss_pred ee-EEEEecCcceEeehhhh
Confidence 00 12345677777776654
No 66
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=89.55 E-value=0.017 Score=54.29 Aligned_cols=107 Identities=21% Similarity=0.204 Sum_probs=67.5
Q ss_pred hhCCCCcEEEEecccceEecCCCCccccccCCCCcccEEeccCCcccccccccCCccccCCCCccEEEEecCCCcceecC
Q 038204 15 EKFRNLEILYLSRTSYTEILSNEGHSEKHVGKFSQVKHLQPYKLNDLKQLWKQGSKLDFIFTNLEILRVYCCQNLIVLLP 94 (254)
Q Consensus 15 ~~l~~L~~L~l~~c~l~~l~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~l~~~~~~~~~~~~~L~~L~l~~C~~L~~l~p 94 (254)
+-++.|++|+++.++++.+- .+-.+++|++|+|+. ..|+.+..- ....+. |+.|.|++ +.++++ -
T Consensus 184 qll~ale~LnLshNk~~~v~--------~Lr~l~~LkhLDlsy-N~L~~vp~l---~~~gc~-L~~L~lrn-N~l~tL-~ 248 (1096)
T KOG1859|consen 184 QLLPALESLNLSHNKFTKVD--------NLRRLPKLKHLDLSY-NCLRHVPQL---SMVGCK-LQLLNLRN-NALTTL-R 248 (1096)
T ss_pred HHHHHhhhhccchhhhhhhH--------HHHhccccccccccc-chhcccccc---chhhhh-heeeeecc-cHHHhh-h
Confidence 44688899999988665432 244589999999854 234443211 122233 88888887 345655 2
Q ss_pred CcccccccccEEEeeccccccccccchhhccccccceeEEecCC
Q 038204 95 SSSVSFRNLTDLQVWGCKELMKLVTSSTAKSLVRLRIMKVCGSR 138 (254)
Q Consensus 95 ~~~~~~~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~C~ 138 (254)
++.++.+|+.|++++.- |...........|..|+.|.+.+.+
T Consensus 249 -gie~LksL~~LDlsyNl-l~~hseL~pLwsLs~L~~L~LeGNP 290 (1096)
T KOG1859|consen 249 -GIENLKSLYGLDLSYNL-LSEHSELEPLWSLSSLIVLWLEGNP 290 (1096)
T ss_pred -hHHhhhhhhccchhHhh-hhcchhhhHHHHHHHHHHHhhcCCc
Confidence 37788899999987642 2222223345667778888888865
No 67
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.26 E-value=0.14 Score=43.41 Aligned_cols=141 Identities=17% Similarity=0.179 Sum_probs=70.5
Q ss_pred CCCcccEEeccCCcccccccccCCccccCCCCccEEEEecCCCcceecCCcc-cccccccEEEeeccccccccccchhhc
Q 038204 46 KFSQVKHLQPYKLNDLKQLWKQGSKLDFIFTNLEILRVYCCQNLIVLLPSSS-VSFRNLTDLQVWGCKELMKLVTSSTAK 124 (254)
Q Consensus 46 ~~~~L~~L~L~~~~~L~~l~~~~~~~~~~~~~L~~L~l~~C~~L~~l~p~~~-~~~~~L~~L~i~~C~~L~~l~~~~~~~ 124 (254)
....++.+++.+. .+.. |.+.......+|.|+.|+|+. +.|...... . ....+|+.|.+.+-. |..-..-+...
T Consensus 69 ~~~~v~elDL~~N-~iSd-WseI~~ile~lP~l~~LNls~-N~L~s~I~~-lp~p~~nl~~lVLNgT~-L~w~~~~s~l~ 143 (418)
T KOG2982|consen 69 SVTDVKELDLTGN-LISD-WSEIGAILEQLPALTTLNLSC-NSLSSDIKS-LPLPLKNLRVLVLNGTG-LSWTQSTSSLD 143 (418)
T ss_pred Hhhhhhhhhcccc-hhcc-HHHHHHHHhcCccceEeeccC-CcCCCcccc-CcccccceEEEEEcCCC-CChhhhhhhhh
Confidence 3566677776441 2222 544444567788999999864 444321111 1 134578888776542 22221223456
Q ss_pred cccccceeEEecCCCceeEeecCCCCccccccccccceeecccccccceecCCCccccCCCcCeEEEeCCC
Q 038204 125 SLVRLRIMKVCGSRAMTQVVTSEKDGAEDEIVFSNLKALTLLDLDSLTSFCSGNYTFKFPSLRDLEVIGCP 195 (254)
Q Consensus 125 ~l~~L~~L~i~~C~~l~~i~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~~sL~~L~i~~Cp 195 (254)
.+|.++.|+++... +..+-..+. .....-+.++.|....|+.............||++..+-+.+||
T Consensus 144 ~lP~vtelHmS~N~-~rq~n~Dd~---c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~P 210 (418)
T KOG2982|consen 144 DLPKVTELHMSDNS-LRQLNLDDN---CIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGP 210 (418)
T ss_pred cchhhhhhhhccch-hhhhccccc---cccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCc
Confidence 67778888777653 222111111 11123345555555555433322211122356666666666665
No 68
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=85.81 E-value=0.19 Score=46.27 Aligned_cols=32 Identities=25% Similarity=0.435 Sum_probs=19.8
Q ss_pred CCcEEEEecccceEecCCCCccccccCCCCcccEEeccC
Q 038204 19 NLEILYLSRTSYTEILSNEGHSEKHVGKFSQVKHLQPYK 57 (254)
Q Consensus 19 ~L~~L~l~~c~l~~l~~~~~~~~~~~~~~~~L~~L~L~~ 57 (254)
-|+.|.+++++++.+++. ++..+.|..|+.+.
T Consensus 144 pLkvli~sNNkl~~lp~~-------ig~~~tl~~ld~s~ 175 (722)
T KOG0532|consen 144 PLKVLIVSNNKLTSLPEE-------IGLLPTLAHLDVSK 175 (722)
T ss_pred cceeEEEecCccccCCcc-------cccchhHHHhhhhh
Confidence 477888888877777663 33345555555443
No 69
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=85.63 E-value=0.093 Score=44.11 Aligned_cols=102 Identities=15% Similarity=0.005 Sum_probs=57.0
Q ss_pred CCCCcEEEEecccceEecCCCCccccccCCCCcccEEeccCCcccccccccCCccccCCCCccEEEEecCCCcceec-CC
Q 038204 17 FRNLEILYLSRTSYTEILSNEGHSEKHVGKFSQVKHLQPYKLNDLKQLWKQGSKLDFIFTNLEILRVYCCQNLIVLL-PS 95 (254)
Q Consensus 17 l~~L~~L~l~~c~l~~l~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~l~~~~~~~~~~~~~L~~L~l~~C~~L~~l~-p~ 95 (254)
+.+.++|+..||.+.+|-. ...+|.|+.|.|+- .+++.+ .....|++|+.|++... .+.++. -.
T Consensus 18 l~~vkKLNcwg~~L~DIsi--------c~kMp~lEVLsLSv-NkIssL-----~pl~rCtrLkElYLRkN-~I~sldEL~ 82 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDISI--------CEKMPLLEVLSLSV-NKISSL-----APLQRCTRLKELYLRKN-CIESLDELE 82 (388)
T ss_pred HHHhhhhcccCCCccHHHH--------HHhcccceeEEeec-cccccc-----hhHHHHHHHHHHHHHhc-ccccHHHHH
Confidence 6677888888887765522 33578888887742 233332 11345667777766541 122210 00
Q ss_pred cccccccccEEEeecccccccccc---chhhccccccceeE
Q 038204 96 SSVSFRNLTDLQVWGCKELMKLVT---SSTAKSLVRLRIMK 133 (254)
Q Consensus 96 ~~~~~~~L~~L~i~~C~~L~~l~~---~~~~~~l~~L~~L~ 133 (254)
.+.++|+|+.|-|...|-....+. ...+..||+|+.|+
T Consensus 83 YLknlpsLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 83 YLKNLPSLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred HHhcCchhhhHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 244677777777766554333322 12355677777765
No 70
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=82.88 E-value=0.025 Score=53.28 Aligned_cols=35 Identities=14% Similarity=0.235 Sum_probs=17.6
Q ss_pred ccccccEEEeeccccccccccchhhccccccceeEEecC
Q 038204 99 SFRNLTDLQVWGCKELMKLVTSSTAKSLVRLRIMKVCGS 137 (254)
Q Consensus 99 ~~~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~C 137 (254)
-+|.|+.|+++.. +++++ .....|++|++|+|++.
T Consensus 185 ll~ale~LnLshN-k~~~v---~~Lr~l~~LkhLDlsyN 219 (1096)
T KOG1859|consen 185 LLPALESLNLSHN-KFTKV---DNLRRLPKLKHLDLSYN 219 (1096)
T ss_pred HHHHhhhhccchh-hhhhh---HHHHhcccccccccccc
Confidence 3555566666543 23332 23455566666666543
No 71
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=77.99 E-value=1.1 Score=22.80 Aligned_cols=19 Identities=26% Similarity=0.310 Sum_probs=13.2
Q ss_pred CCCCcEEEEecccceEecC
Q 038204 17 FRNLEILYLSRTSYTEILS 35 (254)
Q Consensus 17 l~~L~~L~l~~c~l~~l~~ 35 (254)
+++|+.|++++|.++.++.
T Consensus 1 L~~L~~L~L~~N~l~~lp~ 19 (26)
T smart00369 1 LPNLRELDLSNNQLSSLPP 19 (26)
T ss_pred CCCCCEEECCCCcCCcCCH
Confidence 4677778887777766654
No 72
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=77.99 E-value=1.1 Score=22.80 Aligned_cols=19 Identities=26% Similarity=0.310 Sum_probs=13.2
Q ss_pred CCCCcEEEEecccceEecC
Q 038204 17 FRNLEILYLSRTSYTEILS 35 (254)
Q Consensus 17 l~~L~~L~l~~c~l~~l~~ 35 (254)
+++|+.|++++|.++.++.
T Consensus 1 L~~L~~L~L~~N~l~~lp~ 19 (26)
T smart00370 1 LPNLRELDLSNNQLSSLPP 19 (26)
T ss_pred CCCCCEEECCCCcCCcCCH
Confidence 4677778887777766654
No 73
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=76.03 E-value=0.24 Score=42.81 Aligned_cols=13 Identities=38% Similarity=0.930 Sum_probs=8.4
Q ss_pred cCCCcCeEEEeCC
Q 038204 182 KFPSLRDLEVIGC 194 (254)
Q Consensus 182 ~~~sL~~L~i~~C 194 (254)
.||+|+.|.+.+|
T Consensus 239 s~~~L~El~l~dc 251 (382)
T KOG1909|consen 239 SWPHLRELNLGDC 251 (382)
T ss_pred ccchheeeccccc
Confidence 4556666666666
No 74
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=61.16 E-value=3.6 Score=36.81 Aligned_cols=82 Identities=17% Similarity=0.195 Sum_probs=53.2
Q ss_pred HhhCCCCcEEEEecccceEecCCCCccccccCCCCcccEEeccCCcccccccccCCccccCCCCccEEEEecCCCcceec
Q 038204 14 LEKFRNLEILYLSRTSYTEILSNEGHSEKHVGKFSQVKHLQPYKLNDLKQLWKQGSKLDFIFTNLEILRVYCCQNLIVLL 93 (254)
Q Consensus 14 ~~~l~~L~~L~l~~c~l~~l~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~l~~~~~~~~~~~~~L~~L~l~~C~~L~~l~ 93 (254)
+..+++|++|+|+++.++.+.. +..++.|+.|++.+. .++.+ . ....+++|+.+++.++. +..+.
T Consensus 114 l~~~~~L~~L~ls~N~I~~i~~--------l~~l~~L~~L~l~~N-~i~~~--~---~~~~l~~L~~l~l~~n~-i~~ie 178 (414)
T KOG0531|consen 114 LSSLVNLQVLDLSFNKITKLEG--------LSTLTLLKELNLSGN-LISDI--S---GLESLKSLKLLDLSYNR-IVDIE 178 (414)
T ss_pred hhhhhcchheeccccccccccc--------hhhccchhhheeccC-cchhc--c---CCccchhhhcccCCcch-hhhhh
Confidence 4578999999999998877654 455777899988764 33333 1 12337788888888764 33332
Q ss_pred C-CcccccccccEEEeecc
Q 038204 94 P-SSSVSFRNLTDLQVWGC 111 (254)
Q Consensus 94 p-~~~~~~~~L~~L~i~~C 111 (254)
+ . ...+.+++.+.+.+.
T Consensus 179 ~~~-~~~~~~l~~l~l~~n 196 (414)
T KOG0531|consen 179 NDE-LSELISLEELDLGGN 196 (414)
T ss_pred hhh-hhhccchHHHhccCC
Confidence 2 1 245666666666554
No 75
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=57.20 E-value=7.1 Score=19.25 Aligned_cols=12 Identities=25% Similarity=0.288 Sum_probs=5.2
Q ss_pred ccccEEEeeccc
Q 038204 101 RNLTDLQVWGCK 112 (254)
Q Consensus 101 ~~L~~L~i~~C~ 112 (254)
++|++|+|++|.
T Consensus 2 ~~L~~L~l~~n~ 13 (24)
T PF13516_consen 2 PNLETLDLSNNQ 13 (24)
T ss_dssp TT-SEEE-TSSB
T ss_pred CCCCEEEccCCc
Confidence 445555555553
No 76
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=53.77 E-value=2.4 Score=32.13 Aligned_cols=82 Identities=16% Similarity=0.105 Sum_probs=47.9
Q ss_pred hhCCCCcEEEEecccceEecCCCCccccccCCCCcccEEeccCCcccccccccCCccccCCCCccEEEEecCCCcceecC
Q 038204 15 EKFRNLEILYLSRTSYTEILSNEGHSEKHVGKFSQVKHLQPYKLNDLKQLWKQGSKLDFIFTNLEILRVYCCQNLIVLLP 94 (254)
Q Consensus 15 ~~l~~L~~L~l~~c~l~~l~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~l~~~~~~~~~~~~~L~~L~l~~C~~L~~l~p 94 (254)
.+...|...+|+++.++.+++. -...||.++.|++.+. .+.+++.+ ...++.|+.|+++..+ +... |
T Consensus 50 ~~~~el~~i~ls~N~fk~fp~k------ft~kf~t~t~lNl~~n-eisdvPeE----~Aam~aLr~lNl~~N~-l~~~-p 116 (177)
T KOG4579|consen 50 SKGYELTKISLSDNGFKKFPKK------FTIKFPTATTLNLANN-EISDVPEE----LAAMPALRSLNLRFNP-LNAE-P 116 (177)
T ss_pred hCCceEEEEecccchhhhCCHH------Hhhccchhhhhhcchh-hhhhchHH----HhhhHHhhhcccccCc-cccc-h
Confidence 3456677788888877766541 1235778888888653 45555333 4567888888888643 2222 3
Q ss_pred CcccccccccEEEee
Q 038204 95 SSSVSFRNLTDLQVW 109 (254)
Q Consensus 95 ~~~~~~~~L~~L~i~ 109 (254)
.-+..+.+|-.|+..
T Consensus 117 ~vi~~L~~l~~Lds~ 131 (177)
T KOG4579|consen 117 RVIAPLIKLDMLDSP 131 (177)
T ss_pred HHHHHHHhHHHhcCC
Confidence 223334455555443
No 77
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=50.82 E-value=12 Score=19.34 Aligned_cols=17 Identities=41% Similarity=0.483 Sum_probs=11.3
Q ss_pred CCCCcEEEEecccceEe
Q 038204 17 FRNLEILYLSRTSYTEI 33 (254)
Q Consensus 17 l~~L~~L~l~~c~l~~l 33 (254)
+.+|+.|+++.+.++.+
T Consensus 1 L~~L~~L~L~~NkI~~I 17 (26)
T smart00365 1 LTNLEELDLSQNKIKKI 17 (26)
T ss_pred CCccCEEECCCCcccee
Confidence 45777788777765543
No 78
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=44.86 E-value=10 Score=19.64 Aligned_cols=18 Identities=22% Similarity=0.252 Sum_probs=13.5
Q ss_pred CCCcEEEEecccceEecC
Q 038204 18 RNLEILYLSRTSYTEILS 35 (254)
Q Consensus 18 ~~L~~L~l~~c~l~~l~~ 35 (254)
++|+.|++++++++.+++
T Consensus 2 ~~L~~L~vs~N~Lt~LPe 19 (26)
T smart00364 2 PSLKELNVSNNQLTSLPE 19 (26)
T ss_pred cccceeecCCCccccCcc
Confidence 467888888887777665
No 79
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=25.35 E-value=38 Score=17.46 Aligned_cols=13 Identities=31% Similarity=0.258 Sum_probs=8.2
Q ss_pred CCCcEEEEecccc
Q 038204 18 RNLEILYLSRTSY 30 (254)
Q Consensus 18 ~~L~~L~l~~c~l 30 (254)
++|++|+|++|.+
T Consensus 2 ~~L~~LdL~~N~i 14 (28)
T smart00368 2 PSLRELDLSNNKL 14 (28)
T ss_pred CccCEEECCCCCC
Confidence 4567777776644
Done!