Query 038204
Match_columns 254
No_of_seqs 298 out of 1714
Neff 9.3
Searched_HMMs 29240
Date Mon Mar 25 14:40:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038204.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/038204hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4fcg_A Uncharacterized protein 99.6 1.4E-15 5E-20 130.2 12.1 178 8-209 95-302 (328)
2 4fcg_A Uncharacterized protein 99.6 1.6E-14 5.6E-19 123.7 14.9 177 16-209 79-278 (328)
3 3zyi_A Leucine-rich repeat-con 99.5 9.9E-13 3.4E-17 117.1 16.0 198 7-229 88-309 (452)
4 3zyj_A Leucine-rich repeat-con 99.5 1E-12 3.5E-17 116.7 16.0 198 7-229 77-298 (440)
5 2xwt_C Thyrotropin receptor; s 99.5 8.7E-13 3E-17 107.5 14.3 165 18-204 31-199 (239)
6 2xwt_C Thyrotropin receptor; s 99.5 1.3E-12 4.4E-17 106.5 14.1 186 5-213 42-233 (239)
7 1ozn_A Reticulon 4 receptor; N 99.4 3.4E-12 1.2E-16 106.6 15.9 194 10-229 48-244 (285)
8 4ezg_A Putative uncharacterize 99.4 3.2E-12 1.1E-16 101.2 11.6 152 15-195 41-192 (197)
9 2o6q_A Variable lymphocyte rec 99.4 1.8E-11 6E-16 101.7 15.6 183 18-227 37-222 (270)
10 2ast_B S-phase kinase-associat 99.4 1.1E-13 3.9E-18 118.1 2.0 112 16-138 91-206 (336)
11 2z62_A TOLL-like receptor 4, v 99.4 3.3E-11 1.1E-15 100.2 16.6 147 74-237 98-251 (276)
12 3o53_A Protein LRIM1, AGAP0063 99.4 1.7E-11 5.9E-16 104.1 15.2 181 9-213 49-244 (317)
13 3zyj_A Leucine-rich repeat-con 99.4 1.8E-11 6.1E-16 108.6 15.8 161 8-194 57-217 (440)
14 3zyi_A Leucine-rich repeat-con 99.3 2E-11 6.9E-16 108.6 15.8 132 18-168 75-206 (452)
15 2o6q_A Variable lymphocyte rec 99.3 8E-12 2.7E-16 103.7 12.1 167 7-195 50-216 (270)
16 3rfs_A Internalin B, repeat mo 99.3 1.2E-11 4.2E-16 102.8 11.9 163 15-204 38-200 (272)
17 1p9a_G Platelet glycoprotein I 99.3 2.7E-11 9.1E-16 101.8 13.7 189 18-237 31-221 (290)
18 1p9a_G Platelet glycoprotein I 99.3 2.9E-11 9.8E-16 101.6 13.3 163 7-195 44-206 (290)
19 2z80_A TOLL-like receptor 2, v 99.3 4.7E-11 1.6E-15 102.8 14.6 191 8-213 66-308 (353)
20 1ozn_A Reticulon 4 receptor; N 99.3 6.1E-11 2.1E-15 99.0 14.7 175 17-213 31-208 (285)
21 3oja_A Leucine-rich immune mol 99.3 4.9E-11 1.7E-15 107.4 15.0 181 9-213 49-244 (487)
22 2id5_A Lingo-1, leucine rich r 99.3 7.3E-11 2.5E-15 105.5 16.0 176 9-201 47-240 (477)
23 3rfs_A Internalin B, repeat mo 99.3 7E-11 2.4E-15 98.2 14.6 159 14-196 59-217 (272)
24 2id5_A Lingo-1, leucine rich r 99.3 1.1E-10 3.8E-15 104.3 15.4 173 9-203 71-266 (477)
25 2ast_B S-phase kinase-associat 99.3 5.5E-13 1.9E-17 113.8 0.3 120 11-141 61-182 (336)
26 3o6n_A APL1; leucine-rich repe 99.3 2.1E-10 7.1E-15 100.0 16.6 94 7-111 58-151 (390)
27 3o6n_A APL1; leucine-rich repe 99.3 1E-10 3.6E-15 101.9 14.6 93 8-111 83-175 (390)
28 3vq2_A TLR4, TOLL-like recepto 99.2 8.7E-11 3E-15 108.0 14.4 188 14-227 372-562 (606)
29 1xku_A Decorin; proteoglycan, 99.2 2.4E-10 8.3E-15 97.3 16.3 44 9-58 67-110 (330)
30 2z66_A Variable lymphocyte rec 99.2 2.1E-10 7.2E-15 96.6 15.7 204 7-228 41-266 (306)
31 4ay9_X Follicle-stimulating ho 99.2 6.8E-11 2.3E-15 101.9 12.7 92 8-111 23-114 (350)
32 3t6q_A CD180 antigen; protein- 99.2 8E-11 2.7E-15 108.2 13.9 118 9-138 269-387 (606)
33 1h6u_A Internalin H; cell adhe 99.2 6.1E-11 2.1E-15 100.4 11.4 156 14-195 59-228 (308)
34 3oja_B Anopheles plasmodium-re 99.2 2.6E-10 9E-15 105.0 16.5 94 7-111 64-157 (597)
35 3oja_B Anopheles plasmodium-re 99.2 1.7E-10 5.9E-15 106.2 14.8 93 8-111 89-181 (597)
36 1h6u_A Internalin H; cell adhe 99.2 8.3E-11 2.8E-15 99.6 11.7 103 15-138 38-140 (308)
37 2z80_A TOLL-like receptor 2, v 99.2 3.9E-11 1.3E-15 103.3 9.6 174 9-195 91-312 (353)
38 4fmz_A Internalin; leucine ric 99.2 4.7E-11 1.6E-15 102.3 9.9 156 14-202 173-328 (347)
39 3m19_A Variable lymphocyte rec 99.2 1.2E-10 4.1E-15 95.5 11.6 159 19-203 15-173 (251)
40 4fmz_A Internalin; leucine ric 99.2 6E-11 2.1E-15 101.6 10.1 154 16-194 42-209 (347)
41 2z62_A TOLL-like receptor 4, v 99.2 1.9E-10 6.6E-15 95.5 12.7 169 8-193 42-233 (276)
42 2z81_A CD282 antigen, TOLL-lik 99.2 1.7E-10 5.7E-15 104.8 11.9 198 8-237 324-524 (549)
43 1h6t_A Internalin B; cell adhe 99.2 2E-10 7E-15 96.4 11.6 146 16-195 66-211 (291)
44 3vq2_A TLR4, TOLL-like recepto 99.2 1E-10 3.5E-15 107.5 10.6 168 7-196 389-557 (606)
45 3v47_A TOLL-like receptor 5B a 99.2 1.2E-09 3.9E-14 96.9 16.5 125 76-213 275-402 (455)
46 1h6t_A Internalin B; cell adhe 99.2 1.6E-10 5.5E-15 97.1 10.2 153 15-202 43-195 (291)
47 2ft3_A Biglycan; proteoglycan, 99.1 1E-09 3.5E-14 93.6 14.8 89 9-111 69-157 (332)
48 2z7x_B TOLL-like receptor 1, v 99.1 4.5E-10 1.5E-14 101.4 13.1 169 45-238 321-496 (520)
49 2z66_A Variable lymphocyte rec 99.1 2E-10 6.8E-15 96.8 9.7 165 16-195 76-259 (306)
50 1m9s_A Internalin B; cell inva 99.1 1.7E-10 5.7E-15 106.5 9.7 148 14-195 61-208 (605)
51 2z63_A TOLL-like receptor 4, v 99.1 4E-10 1.4E-14 102.6 12.1 197 15-237 344-545 (570)
52 4ay9_X Follicle-stimulating ho 99.1 1.3E-09 4.5E-14 93.8 14.3 182 4-205 40-222 (350)
53 4eco_A Uncharacterized protein 99.1 3.2E-10 1.1E-14 105.2 11.1 117 9-138 198-341 (636)
54 1xeu_A Internalin C; cellular 99.1 4.6E-10 1.6E-14 92.9 10.3 147 14-195 37-183 (263)
55 1ogq_A PGIP-2, polygalacturona 99.1 7.8E-10 2.7E-14 93.7 11.9 92 8-111 67-159 (313)
56 3t6q_A CD180 antigen; protein- 99.1 1.7E-09 5.9E-14 99.3 14.9 39 155-195 473-511 (606)
57 2z63_A TOLL-like receptor 4, v 99.1 1E-09 3.4E-14 99.9 13.1 109 74-194 371-480 (570)
58 1ziw_A TOLL-like receptor 3; i 99.1 1.4E-09 4.9E-14 101.2 13.5 177 9-203 396-602 (680)
59 1xku_A Decorin; proteoglycan, 99.1 2E-09 6.8E-14 91.6 13.3 169 8-204 114-282 (330)
60 4ecn_A Leucine-rich repeat pro 99.1 6.6E-10 2.3E-14 106.3 11.1 168 9-202 440-636 (876)
61 1wwl_A Monocyte differentiatio 99.1 5.1E-10 1.7E-14 94.8 9.1 175 16-205 93-273 (312)
62 3rgz_A Protein brassinosteroid 99.0 8.9E-10 3.1E-14 104.4 11.6 143 45-203 415-557 (768)
63 4ezg_A Putative uncharacterize 99.0 5.7E-10 1.9E-14 88.1 8.6 130 14-168 62-191 (197)
64 3rgz_A Protein brassinosteroid 99.0 1E-09 3.6E-14 103.9 11.7 134 75-213 393-545 (768)
65 1o6v_A Internalin A; bacterial 99.0 2.5E-09 8.6E-14 95.4 13.6 20 14-33 195-214 (466)
66 1m9s_A Internalin B; cell inva 99.0 4.7E-10 1.6E-14 103.5 9.1 152 15-201 40-191 (605)
67 3o53_A Protein LRIM1, AGAP0063 99.0 2E-09 6.9E-14 91.3 12.2 164 14-197 76-250 (317)
68 1o6v_A Internalin A; bacterial 99.0 9.8E-10 3.4E-14 98.1 10.7 153 14-195 217-386 (466)
69 3m19_A Variable lymphocyte rec 99.0 1.2E-09 4E-14 89.6 10.0 164 7-195 27-190 (251)
70 3a79_B TLR6, VLRB.59, TOLL-lik 99.0 3.5E-09 1.2E-13 96.7 14.1 186 18-236 331-523 (562)
71 2z81_A CD282 antigen, TOLL-lik 99.0 6.8E-10 2.3E-14 100.7 9.1 109 18-138 26-134 (549)
72 2ft3_A Biglycan; proteoglycan, 99.0 4.2E-09 1.4E-13 89.7 13.0 168 8-204 92-283 (332)
73 3oja_A Leucine-rich immune mol 99.0 2.9E-09 9.8E-14 95.8 12.0 164 14-197 76-250 (487)
74 3bz5_A Internalin-J, INLJ; leu 99.0 3.4E-09 1.2E-13 94.6 12.3 99 15-137 39-137 (457)
75 3v47_A TOLL-like receptor 5B a 99.0 2.6E-09 8.8E-14 94.7 11.3 135 18-168 30-164 (455)
76 4glp_A Monocyte differentiatio 99.0 1.2E-09 4E-14 92.4 8.6 175 16-204 89-270 (310)
77 1ogq_A PGIP-2, polygalacturona 99.0 1.1E-09 3.8E-14 92.8 8.2 169 8-203 116-287 (313)
78 2ell_A Acidic leucine-rich nuc 99.0 6.8E-10 2.3E-14 85.3 6.3 116 74-202 47-164 (168)
79 3j0a_A TOLL-like receptor 5; m 99.0 5.3E-09 1.8E-13 100.1 13.8 136 17-168 23-158 (844)
80 3e6j_A Variable lymphocyte rec 99.0 3.9E-09 1.3E-13 85.4 10.8 132 47-195 39-170 (229)
81 4eco_A Uncharacterized protein 99.0 2.3E-09 7.9E-14 99.5 10.2 166 9-195 239-413 (636)
82 1wwl_A Monocyte differentiatio 98.9 5.8E-10 2E-14 94.4 5.3 171 8-202 110-291 (312)
83 4g8a_A TOLL-like receptor 4; l 98.9 4.4E-08 1.5E-12 89.8 18.0 172 46-237 418-593 (635)
84 1ziw_A TOLL-like receptor 3; i 98.9 3.1E-08 1.1E-12 92.2 16.9 34 160-195 250-283 (680)
85 2o6s_A Variable lymphocyte rec 98.9 2.2E-09 7.5E-14 85.3 7.8 131 18-168 28-158 (208)
86 2z7x_B TOLL-like receptor 1, v 98.9 3.7E-09 1.3E-13 95.4 10.2 157 16-195 322-479 (520)
87 2p1m_B Transport inhibitor res 98.9 4.4E-10 1.5E-14 102.8 4.2 66 14-87 101-167 (594)
88 4glp_A Monocyte differentiatio 98.9 1.1E-09 3.8E-14 92.6 6.3 177 8-202 106-289 (310)
89 2p1m_B Transport inhibitor res 98.9 1.2E-10 4.1E-15 106.6 -0.2 102 8-112 56-167 (594)
90 2o6s_A Variable lymphocyte rec 98.9 1.5E-08 5E-13 80.5 11.8 134 46-195 26-159 (208)
91 2v9t_B SLIT homolog 2 protein 98.9 1.2E-08 4.3E-13 81.9 11.2 83 48-137 32-114 (220)
92 2v70_A SLIT-2, SLIT homolog 2 98.9 1.6E-08 5.6E-13 81.2 11.7 151 21-195 14-164 (220)
93 3bz5_A Internalin-J, INLJ; leu 98.9 4.3E-09 1.5E-13 93.9 8.9 35 14-57 166-200 (457)
94 2xot_A Amphoterin-induced prot 98.9 9E-09 3.1E-13 88.9 10.5 188 21-236 21-215 (361)
95 4g8a_A TOLL-like receptor 4; l 98.9 1.4E-08 4.8E-13 93.2 12.2 137 18-174 52-188 (635)
96 3ogk_B Coronatine-insensitive 98.9 5E-10 1.7E-14 102.5 2.4 117 75-199 402-527 (592)
97 3j0a_A TOLL-like receptor 5; m 98.9 1.8E-08 6.3E-13 96.3 13.1 168 9-195 39-215 (844)
98 2ell_A Acidic leucine-rich nuc 98.9 6.5E-09 2.2E-13 79.7 8.1 139 17-175 23-163 (168)
99 2je0_A Acidic leucine-rich nuc 98.8 1.3E-09 4.3E-14 82.0 3.6 58 75-137 41-98 (149)
100 3a79_B TLR6, VLRB.59, TOLL-lik 98.8 9.2E-09 3.2E-13 93.8 9.8 158 15-195 350-508 (562)
101 4ecn_A Leucine-rich repeat pro 98.8 4.8E-09 1.6E-13 100.4 8.0 164 9-194 481-654 (876)
102 1a9n_A U2A', U2A'; complex (nu 98.8 5.1E-09 1.8E-13 81.1 6.5 107 16-138 17-124 (176)
103 3g06_A SSPH2 (leucine-rich rep 98.8 7E-08 2.4E-12 89.3 15.0 46 157-209 240-285 (622)
104 1jl5_A Outer protein YOPM; leu 98.8 2.6E-08 9E-13 88.7 11.1 11 48-58 131-141 (454)
105 2xot_A Amphoterin-induced prot 98.8 1.5E-08 5E-13 87.6 9.2 158 18-194 39-199 (361)
106 3ogk_B Coronatine-insensitive 98.8 1.8E-09 6.1E-14 98.8 2.3 45 156-201 376-423 (592)
107 3e4g_A ATP synthase subunit S, 98.8 4.5E-09 1.5E-13 81.4 4.0 40 77-117 62-101 (176)
108 1xeu_A Internalin C; cellular 98.7 3.6E-08 1.2E-12 81.5 9.3 124 14-168 59-182 (263)
109 2v9t_B SLIT homolog 2 protein 98.7 5.4E-08 1.9E-12 78.1 10.1 140 7-169 24-163 (220)
110 3g06_A SSPH2 (leucine-rich rep 98.7 1.6E-07 5.3E-12 86.9 13.9 38 158-202 221-258 (622)
111 2v70_A SLIT-2, SLIT homolog 2 98.7 6.5E-08 2.2E-12 77.7 10.0 139 8-168 25-163 (220)
112 3e6j_A Variable lymphocyte rec 98.7 5.1E-08 1.7E-12 78.8 9.3 139 7-169 32-170 (229)
113 3e4g_A ATP synthase subunit S, 98.7 6.2E-09 2.1E-13 80.6 3.5 87 49-140 62-152 (176)
114 1jl5_A Outer protein YOPM; leu 98.7 9E-08 3.1E-12 85.3 10.8 17 185-202 318-334 (454)
115 2je0_A Acidic leucine-rich nuc 98.7 2.6E-08 8.9E-13 74.7 5.8 108 16-138 15-124 (149)
116 3cvr_A Invasion plasmid antige 98.6 2.5E-07 8.4E-12 84.7 11.1 150 19-209 60-231 (571)
117 1w8a_A SLIT protein; signaling 98.5 4.6E-07 1.6E-11 71.0 8.8 126 21-168 11-136 (192)
118 2o6r_A Variable lymphocyte rec 98.5 5.4E-07 1.8E-11 69.5 8.8 61 74-137 50-110 (177)
119 3cvr_A Invasion plasmid antige 98.5 5.3E-07 1.8E-11 82.5 9.8 108 74-199 138-245 (571)
120 2ca6_A RAN GTPase-activating p 98.5 6.5E-09 2.2E-13 90.4 -2.8 13 16-28 58-70 (386)
121 2o6r_A Variable lymphocyte rec 98.5 7.9E-07 2.7E-11 68.5 9.0 108 76-195 28-135 (177)
122 2ca6_A RAN GTPase-activating p 98.4 2.5E-08 8.5E-13 86.7 0.3 95 14-112 28-133 (386)
123 4b8c_D Glucose-repressible alc 98.4 1.7E-07 5.9E-12 88.2 5.8 113 9-138 215-327 (727)
124 4b8c_D Glucose-repressible alc 98.4 2.1E-07 7E-12 87.7 6.2 107 73-195 221-327 (727)
125 1dce_A Protein (RAB geranylger 98.4 2.9E-07 9.8E-12 84.3 6.8 161 10-190 401-566 (567)
126 2wfh_A SLIT homolog 2 protein 98.4 9E-07 3.1E-11 69.5 8.7 107 47-168 30-136 (193)
127 3goz_A Leucine-rich repeat-con 98.4 3.3E-08 1.1E-12 85.3 0.4 122 11-137 15-148 (362)
128 1w8a_A SLIT protein; signaling 98.4 9.4E-07 3.2E-11 69.3 8.2 117 7-138 21-137 (192)
129 2wfh_A SLIT homolog 2 protein 98.4 1E-06 3.4E-11 69.3 8.3 115 7-138 23-137 (193)
130 1a9n_A U2A', U2A'; complex (nu 98.4 7.4E-07 2.5E-11 68.7 7.4 133 46-195 17-151 (176)
131 1z7x_W Ribonuclease inhibitor; 98.4 2.9E-08 1E-12 87.9 -1.0 16 15-30 53-68 (461)
132 3sb4_A Hypothetical leucine ri 98.4 5.4E-06 1.9E-10 70.3 13.1 170 17-204 48-292 (329)
133 1ds9_A Outer arm dynein; leuci 98.4 1.8E-08 6.1E-13 79.5 -2.4 108 44-169 44-151 (198)
134 1z7x_W Ribonuclease inhibitor; 98.2 4.2E-08 1.4E-12 86.9 -3.6 118 13-137 23-152 (461)
135 2ra8_A Uncharacterized protein 98.2 9.4E-07 3.2E-11 76.4 4.3 169 14-195 135-318 (362)
136 1dce_A Protein (RAB geranylger 98.2 3.3E-06 1.1E-10 77.3 7.9 127 18-165 441-567 (567)
137 3sb4_A Hypothetical leucine ri 98.2 1.3E-05 4.3E-10 68.0 11.0 91 100-204 225-316 (329)
138 1ds9_A Outer arm dynein; leuci 98.1 2.3E-07 7.7E-12 73.1 -0.5 109 72-196 44-152 (198)
139 3goz_A Leucine-rich repeat-con 98.1 4.8E-07 1.6E-11 77.9 0.1 37 158-195 225-264 (362)
140 3g39_A Variable lymphocyte rec 98.1 1.1E-05 3.9E-10 61.8 7.8 103 20-138 11-113 (170)
141 2r9u_A Variable lymphocyte rec 98.1 1.3E-05 4.6E-10 61.6 8.0 102 21-138 15-116 (174)
142 2r9u_A Variable lymphocyte rec 97.9 2.3E-05 7.8E-10 60.3 6.6 92 7-112 25-116 (174)
143 2ifg_A High affinity nerve gro 97.8 5.5E-05 1.9E-09 64.3 8.1 102 52-168 12-113 (347)
144 2ra8_A Uncharacterized protein 97.8 2.7E-05 9.1E-10 67.2 6.0 140 12-168 166-317 (362)
145 3g39_A Variable lymphocyte rec 97.8 4.2E-05 1.4E-09 58.5 6.5 92 7-112 22-113 (170)
146 4fdw_A Leucine rich hypothetic 97.8 0.00044 1.5E-08 60.4 13.4 41 157-202 322-362 (401)
147 2ifg_A High affinity nerve gro 97.7 0.00012 4E-09 62.3 8.1 101 23-138 13-114 (347)
148 3un9_A NLR family member X1; l 97.6 1E-06 3.4E-11 76.5 -6.2 168 17-195 71-250 (372)
149 4fdw_A Leucine rich hypothetic 97.1 0.025 8.5E-07 49.2 16.5 167 8-203 170-340 (401)
150 3un9_A NLR family member X1; l 96.4 0.00022 7.7E-09 61.6 -2.3 145 17-173 100-253 (372)
151 3rw6_A Nuclear RNA export fact 94.9 0.026 8.9E-07 46.3 4.6 39 15-57 167-205 (267)
152 3rw6_A Nuclear RNA export fact 94.8 0.0074 2.5E-07 49.6 1.1 38 99-137 168-206 (267)
153 1io0_A Tropomodulin; LRR prote 94.4 0.0045 1.5E-07 47.7 -1.0 34 100-134 92-128 (185)
154 1io0_A Tropomodulin; LRR prote 93.7 0.012 4.2E-07 45.2 0.2 116 73-195 33-162 (185)
155 4fs7_A Uncharacterized protein 93.0 0.39 1.3E-05 41.1 8.5 81 46-136 295-375 (394)
156 4gt6_A Cell surface protein; l 92.8 0.71 2.4E-05 39.5 10.0 104 46-167 263-366 (394)
157 4fs7_A Uncharacterized protein 92.1 0.71 2.4E-05 39.5 9.1 43 156-203 318-360 (394)
158 4gt6_A Cell surface protein; l 91.1 0.7 2.4E-05 39.5 7.9 110 11-137 258-367 (394)
159 4h09_A Hypothetical leucine ri 90.8 2.7 9.4E-05 35.4 11.3 102 75-191 239-340 (379)
160 4h09_A Hypothetical leucine ri 89.4 2.2 7.6E-05 36.0 9.6 139 13-177 212-350 (379)
161 3rfe_A Platelet glycoprotein I 66.3 3 0.0001 29.7 2.2 36 47-86 30-65 (130)
162 3rfe_A Platelet glycoprotein I 65.2 5.7 0.00019 28.2 3.4 35 76-111 31-65 (130)
163 2lz0_A Uncharacterized protein 27.2 71 0.0024 21.3 3.8 12 97-108 39-50 (100)
No 1
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.64 E-value=1.4e-15 Score=130.22 Aligned_cols=178 Identities=19% Similarity=0.228 Sum_probs=95.8
Q ss_pred eechHHHhhCCCCcEEEEecccceEecCCCCccccccCCCCcccEEeccCCcccccccccCCccccCCCCccEEEEecCC
Q 038204 8 CFPLGLLEKFRNLEILYLSRTSYTEILSNEGHSEKHVGKFSQVKHLQPYKLNDLKQLWKQGSKLDFIFTNLEILRVYCCQ 87 (254)
Q Consensus 8 ~~P~~~~~~l~~L~~L~l~~c~l~~l~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~l~~~~~~~~~~~~~L~~L~l~~C~ 87 (254)
.+|..+ .++++|++|++++|.+..++. .++.+++|++|+++++ .++.+.. ....+++|++|++++|.
T Consensus 95 ~lp~~l-~~l~~L~~L~L~~n~l~~lp~-------~~~~l~~L~~L~Ls~n-~l~~lp~----~l~~l~~L~~L~L~~n~ 161 (328)
T 4fcg_A 95 QFPDQA-FRLSHLQHMTIDAAGLMELPD-------TMQQFAGLETLTLARN-PLRALPA----SIASLNRLRELSIRACP 161 (328)
T ss_dssp SCCSCG-GGGTTCSEEEEESSCCCCCCS-------CGGGGTTCSEEEEESC-CCCCCCG----GGGGCTTCCEEEEEEET
T ss_pred hcChhh-hhCCCCCEEECCCCCccchhH-------HHhccCCCCEEECCCC-ccccCcH----HHhcCcCCCEEECCCCC
Confidence 466654 357888888888876665543 2445666666666554 2333311 13445566666666655
Q ss_pred CcceecCCccc---------ccccccEEEeecccccccccc---------------------chhhccccccceeEEecC
Q 038204 88 NLIVLLPSSSV---------SFRNLTDLQVWGCKELMKLVT---------------------SSTAKSLVRLRIMKVCGS 137 (254)
Q Consensus 88 ~L~~l~p~~~~---------~~~~L~~L~i~~C~~L~~l~~---------------------~~~~~~l~~L~~L~i~~C 137 (254)
.+..+ |..+. .+++|++|++++| +++.++. ......+++|++|++++|
T Consensus 162 ~~~~~-p~~~~~~~~~~~~~~l~~L~~L~L~~n-~l~~lp~~l~~l~~L~~L~L~~N~l~~l~~~l~~l~~L~~L~Ls~n 239 (328)
T 4fcg_A 162 ELTEL-PEPLASTDASGEHQGLVNLQSLRLEWT-GIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGC 239 (328)
T ss_dssp TCCCC-CSCSEEEC-CCCEEESTTCCEEEEEEE-CCCCCCGGGGGCTTCCEEEEESSCCCCCCGGGGGCTTCCEEECTTC
T ss_pred Ccccc-ChhHhhccchhhhccCCCCCEEECcCC-CcCcchHhhcCCCCCCEEEccCCCCCcCchhhccCCCCCEEECcCC
Confidence 55444 22222 2555555555554 2333321 012334444444444444
Q ss_pred CCceeEeecCCCCccccccccccceeecccccccceecCCCccccCCCcCeEEEeCCCCCcccCCCCCCCCC
Q 038204 138 RAMTQVVTSEKDGAEDEIVFSNLKALTLLDLDSLTSFCSGNYTFKFPSLRDLEVIGCPKMKIFTTGELCTPP 209 (254)
Q Consensus 138 ~~l~~i~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~~sL~~L~i~~Cp~L~~lp~~~~~~~~ 209 (254)
.....++. ....+++|+.|++.+|..+..++.. ...+++|++|++++|+.+..+|......+.
T Consensus 240 ~~~~~~p~-------~~~~l~~L~~L~L~~n~~~~~~p~~--~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~ 302 (328)
T 4fcg_A 240 TALRNYPP-------IFGGRAPLKRLILKDCSNLLTLPLD--IHRLTQLEKLDLRGCVNLSRLPSLIAQLPA 302 (328)
T ss_dssp TTCCBCCC-------CTTCCCCCCEEECTTCTTCCBCCTT--GGGCTTCCEEECTTCTTCCCCCGGGGGSCT
T ss_pred cchhhhHH-------HhcCCCCCCEEECCCCCchhhcchh--hhcCCCCCEEeCCCCCchhhccHHHhhccC
Confidence 43332222 2334667777777777666666543 246677777777777777777766554444
No 2
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.60 E-value=1.6e-14 Score=123.66 Aligned_cols=177 Identities=18% Similarity=0.174 Sum_probs=117.6
Q ss_pred hCCCCcEEEEecccceEecCCCCccccccCCCCcccEEeccCCcccccccccCCccccCCCCccEEEEecCCCcceecCC
Q 038204 16 KFRNLEILYLSRTSYTEILSNEGHSEKHVGKFSQVKHLQPYKLNDLKQLWKQGSKLDFIFTNLEILRVYCCQNLIVLLPS 95 (254)
Q Consensus 16 ~l~~L~~L~l~~c~l~~l~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~l~~~~~~~~~~~~~L~~L~l~~C~~L~~l~p~ 95 (254)
...+++.|+++++.++.++. .++.+++|++|++.++. ++.+.. ....+++|++|+++++ .++.+ |.
T Consensus 79 ~~~~l~~L~L~~n~l~~lp~-------~l~~l~~L~~L~L~~n~-l~~lp~----~~~~l~~L~~L~Ls~n-~l~~l-p~ 144 (328)
T 4fcg_A 79 TQPGRVALELRSVPLPQFPD-------QAFRLSHLQHMTIDAAG-LMELPD----TMQQFAGLETLTLARN-PLRAL-PA 144 (328)
T ss_dssp TSTTCCEEEEESSCCSSCCS-------CGGGGTTCSEEEEESSC-CCCCCS----CGGGGTTCSEEEEESC-CCCCC-CG
T ss_pred cccceeEEEccCCCchhcCh-------hhhhCCCCCEEECCCCC-ccchhH----HHhccCCCCEEECCCC-ccccC-cH
Confidence 35899999999998877665 35669999999998763 444422 2567899999999997 56666 66
Q ss_pred cccccccccEEEeeccccccccccchh-------hccccccceeEEecCCCceeEeecCC----------------CCcc
Q 038204 96 SSVSFRNLTDLQVWGCKELMKLVTSST-------AKSLVRLRIMKVCGSRAMTQVVTSEK----------------DGAE 152 (254)
Q Consensus 96 ~~~~~~~L~~L~i~~C~~L~~l~~~~~-------~~~l~~L~~L~i~~C~~l~~i~~~~~----------------~~~~ 152 (254)
.+..+++|++|++++|..+..++.... ...+++|++|++++|. +..++..-. ....
T Consensus 145 ~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~-l~~lp~~l~~l~~L~~L~L~~N~l~~l~~ 223 (328)
T 4fcg_A 145 SIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTG-IRSLPASIANLQNLKSLKIRNSPLSALGP 223 (328)
T ss_dssp GGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEEC-CCCCCGGGGGCTTCCEEEEESSCCCCCCG
T ss_pred HHhcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCC-cCcchHhhcCCCCCCEEEccCCCCCcCch
Confidence 688999999999999988877653211 2348888888888874 433332100 0001
Q ss_pred ccccccccceeecccccccceecCCCccccCCCcCeEEEeCCCCCcccCCCCCCCCC
Q 038204 153 DEIVFSNLKALTLLDLDSLTSFCSGNYTFKFPSLRDLEVIGCPKMKIFTTGELCTPP 209 (254)
Q Consensus 153 ~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~~sL~~L~i~~Cp~L~~lp~~~~~~~~ 209 (254)
....+++|+.|++.+|.....++.. ...+++|++|++++|..+..+|......+.
T Consensus 224 ~l~~l~~L~~L~Ls~n~~~~~~p~~--~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~ 278 (328)
T 4fcg_A 224 AIHHLPKLEELDLRGCTALRNYPPI--FGGRAPLKRLILKDCSNLLTLPLDIHRLTQ 278 (328)
T ss_dssp GGGGCTTCCEEECTTCTTCCBCCCC--TTCCCCCCEEECTTCTTCCBCCTTGGGCTT
T ss_pred hhccCCCCCEEECcCCcchhhhHHH--hcCCCCCCEEECCCCCchhhcchhhhcCCC
Confidence 2334556666666666555554432 245666777777777666666655443333
No 3
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.47 E-value=9.9e-13 Score=117.14 Aligned_cols=198 Identities=13% Similarity=0.102 Sum_probs=113.7
Q ss_pred ceechHHHhhCCCCcEEEEecccceEecCCCCccccccCCCCcccEEeccCCcccccccccCCccccCCCCccEEEEecC
Q 038204 7 ACFPLGLLEKFRNLEILYLSRTSYTEILSNEGHSEKHVGKFSQVKHLQPYKLNDLKQLWKQGSKLDFIFTNLEILRVYCC 86 (254)
Q Consensus 7 ~~~P~~~~~~l~~L~~L~l~~c~l~~l~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~l~~~~~~~~~~~~~L~~L~l~~C 86 (254)
..+++..+.++++|++|++++|.+..+... .++.+++|++|+|.++ .++.+... ....+++|++|+++++
T Consensus 88 ~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~------~~~~l~~L~~L~L~~n-~l~~~~~~---~~~~l~~L~~L~L~~N 157 (452)
T 3zyi_A 88 QMIQADTFRHLHHLEVLQLGRNSIRQIEVG------AFNGLASLNTLELFDN-WLTVIPSG---AFEYLSKLRELWLRNN 157 (452)
T ss_dssp CEECTTTTTTCTTCCEEECCSSCCCEECTT------TTTTCTTCCEEECCSS-CCSBCCTT---TSSSCTTCCEEECCSC
T ss_pred ceECHHHcCCCCCCCEEECCCCccCCcChh------hccCcccCCEEECCCC-cCCccChh---hhcccCCCCEEECCCC
Confidence 345555567889999999998877776541 2345667777777654 24443221 1233555666666554
Q ss_pred CCcceecCCcccccccccEEEeeccccccccccchhhccccccceeEEecCC---------------------CceeEee
Q 038204 87 QNLIVLLPSSSVSFRNLTDLQVWGCKELMKLVTSSTAKSLVRLRIMKVCGSR---------------------AMTQVVT 145 (254)
Q Consensus 87 ~~L~~l~p~~~~~~~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~C~---------------------~l~~i~~ 145 (254)
.++.+.+..+..+++|+.|++++|..++.++. .....+++|+.|++++|. .+..+..
T Consensus 158 -~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~ 235 (452)
T 3zyi_A 158 -PIESIPSYAFNRVPSLMRLDLGELKKLEYISE-GAFEGLFNLKYLNLGMCNIKDMPNLTPLVGLEELEMSGNHFPEIRP 235 (452)
T ss_dssp -CCCEECTTTTTTCTTCCEEECCCCTTCCEECT-TTTTTCTTCCEEECTTSCCSSCCCCTTCTTCCEEECTTSCCSEECG
T ss_pred -CcceeCHhHHhcCCcccEEeCCCCCCccccCh-hhccCCCCCCEEECCCCcccccccccccccccEEECcCCcCcccCc
Confidence 24444333344555555555555555554432 223344555555554442 1222211
Q ss_pred cCCCCccccccccccceeecccccccceecCCCccccCCCcCeEEEeCCCCCcccCCCCCC-CCC--eEEEeeCCCCCcc
Q 038204 146 SEKDGAEDEIVFSNLKALTLLDLDSLTSFCSGNYTFKFPSLRDLEVIGCPKMKIFTTGELC-TPP--RVNVWYGEGDGEC 222 (254)
Q Consensus 146 ~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~~sL~~L~i~~Cp~L~~lp~~~~~-~~~--~~~i~~~~~~~~~ 222 (254)
.....+++|+.|++.++ +++.+.... ...+++|+.|+++++ +++.+|..... .+. .+.+ .+..|
T Consensus 236 ------~~~~~l~~L~~L~L~~n-~l~~~~~~~-~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L----~~Np~ 302 (452)
T 3zyi_A 236 ------GSFHGLSSLKKLWVMNS-QVSLIERNA-FDGLASLVELNLAHN-NLSSLPHDLFTPLRYLVELHL----HHNPW 302 (452)
T ss_dssp ------GGGTTCTTCCEEECTTS-CCCEECTTT-TTTCTTCCEEECCSS-CCSCCCTTSSTTCTTCCEEEC----CSSCE
T ss_pred ------ccccCccCCCEEEeCCC-cCceECHHH-hcCCCCCCEEECCCC-cCCccChHHhccccCCCEEEc----cCCCc
Confidence 13345678888888876 566655432 346789999999998 68888876543 333 5555 45578
Q ss_pred cccccHH
Q 038204 223 RWANDLN 229 (254)
Q Consensus 223 ~~~~d~~ 229 (254)
.+++++.
T Consensus 303 ~CdC~~~ 309 (452)
T 3zyi_A 303 NCDCDIL 309 (452)
T ss_dssp ECSTTTH
T ss_pred CCCCCch
Confidence 8887753
No 4
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.47 E-value=1e-12 Score=116.69 Aligned_cols=198 Identities=14% Similarity=0.177 Sum_probs=107.8
Q ss_pred ceechHHHhhCCCCcEEEEecccceEecCCCCccccccCCCCcccEEeccCCcccccccccCC-----------------
Q 038204 7 ACFPLGLLEKFRNLEILYLSRTSYTEILSNEGHSEKHVGKFSQVKHLQPYKLNDLKQLWKQGS----------------- 69 (254)
Q Consensus 7 ~~~P~~~~~~l~~L~~L~l~~c~l~~l~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~l~~~~~----------------- 69 (254)
..++...+.++++|++|+|++|.+..+.. ..+..+++|++|+|.++ .++.+....+
T Consensus 77 ~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~------~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~N~i~ 149 (440)
T 3zyj_A 77 QIIKVNSFKHLRHLEILQLSRNHIRTIEI------GAFNGLANLNTLELFDN-RLTTIPNGAFVYLSKLKELWLRNNPIE 149 (440)
T ss_dssp CEECTTTTSSCSSCCEEECCSSCCCEECG------GGGTTCSSCCEEECCSS-CCSSCCTTTSCSCSSCCEEECCSCCCC
T ss_pred CeeCHHHhhCCCCCCEEECCCCcCCccCh------hhccCCccCCEEECCCC-cCCeeCHhHhhccccCceeeCCCCccc
Confidence 34454455678888888888887666543 12334566666666554 3333321110
Q ss_pred ----ccccCCCCccEEEEecCCCcceecCCcccccccccEEEeeccccccccccchhhccccccceeEEecCCCceeEee
Q 038204 70 ----KLDFIFTNLEILRVYCCQNLIVLLPSSSVSFRNLTDLQVWGCKELMKLVTSSTAKSLVRLRIMKVCGSRAMTQVVT 145 (254)
Q Consensus 70 ----~~~~~~~~L~~L~l~~C~~L~~l~p~~~~~~~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~C~~l~~i~~ 145 (254)
.....+++|++|++.+|..+..+.+..+..+++|++|++++| +++.++ ....+++|+.|+++++. +..+..
T Consensus 150 ~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n-~l~~~~---~~~~l~~L~~L~Ls~N~-l~~~~~ 224 (440)
T 3zyj_A 150 SIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMC-NLREIP---NLTPLIKLDELDLSGNH-LSAIRP 224 (440)
T ss_dssp EECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTS-CCSSCC---CCTTCSSCCEEECTTSC-CCEECT
T ss_pred ccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCC-cCcccc---ccCCCcccCEEECCCCc-cCccCh
Confidence 012234444444444444444443323344455555555444 233332 23344555555555552 333321
Q ss_pred cCCCCccccccccccceeecccccccceecCCCccccCCCcCeEEEeCCCCCcccCCCCCC-CCC--eEEEeeCCCCCcc
Q 038204 146 SEKDGAEDEIVFSNLKALTLLDLDSLTSFCSGNYTFKFPSLRDLEVIGCPKMKIFTTGELC-TPP--RVNVWYGEGDGEC 222 (254)
Q Consensus 146 ~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~~sL~~L~i~~Cp~L~~lp~~~~~-~~~--~~~i~~~~~~~~~ 222 (254)
.....+++|+.|++.++ +++.+.... ...+++|+.|+++++ +++.+|..... .+. .+.+ .+..|
T Consensus 225 ------~~~~~l~~L~~L~L~~n-~l~~~~~~~-~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L----~~Np~ 291 (440)
T 3zyj_A 225 ------GSFQGLMHLQKLWMIQS-QIQVIERNA-FDNLQSLVEINLAHN-NLTLLPHDLFTPLHHLERIHL----HHNPW 291 (440)
T ss_dssp ------TTTTTCTTCCEEECTTC-CCCEECTTS-STTCTTCCEEECTTS-CCCCCCTTTTSSCTTCCEEEC----CSSCE
T ss_pred ------hhhccCccCCEEECCCC-ceeEEChhh-hcCCCCCCEEECCCC-CCCccChhHhccccCCCEEEc----CCCCc
Confidence 13345678888888876 666665532 346789999999998 67788765432 333 5555 46678
Q ss_pred cccccHH
Q 038204 223 RWANDLN 229 (254)
Q Consensus 223 ~~~~d~~ 229 (254)
.+++++.
T Consensus 292 ~CdC~l~ 298 (440)
T 3zyj_A 292 NCNCDIL 298 (440)
T ss_dssp ECSSTTH
T ss_pred cCCCCch
Confidence 8888753
No 5
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.47 E-value=8.7e-13 Score=107.54 Aligned_cols=165 Identities=15% Similarity=0.128 Sum_probs=108.5
Q ss_pred CCCcEEEEecccceEecCCCCccccccCCCCcccEEeccCCcccccccccCCccccCCCCccEEEEecCCCcceecCCcc
Q 038204 18 RNLEILYLSRTSYTEILSNEGHSEKHVGKFSQVKHLQPYKLNDLKQLWKQGSKLDFIFTNLEILRVYCCQNLIVLLPSSS 97 (254)
Q Consensus 18 ~~L~~L~l~~c~l~~l~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~l~~~~~~~~~~~~~L~~L~l~~C~~L~~l~p~~~ 97 (254)
++|++|++++++++.++.. ..+.+++|++|++.++..++.+... ....+++|++|++++|.+++.+.+..+
T Consensus 31 ~~l~~L~l~~n~l~~i~~~------~~~~l~~L~~L~l~~n~~l~~i~~~---~f~~l~~L~~L~l~~~n~l~~i~~~~f 101 (239)
T 2xwt_C 31 PSTQTLKLIETHLRTIPSH------AFSNLPNISRIYVSIDVTLQQLESH---SFYNLSKVTHIEIRNTRNLTYIDPDAL 101 (239)
T ss_dssp TTCCEEEEESCCCSEECTT------TTTTCTTCCEEEEECCSSCCEECTT---TEESCTTCCEEEEEEETTCCEECTTSE
T ss_pred CcccEEEEeCCcceEECHH------HccCCCCCcEEeCCCCCCcceeCHh---HcCCCcCCcEEECCCCCCeeEcCHHHh
Confidence 3788888888877777651 2445788888888877656665322 134578888888888788888755556
Q ss_pred cccccccEEEeeccccccccccchhhccccccc---eeEEecCCCceeEeecCCCCccccccccccc-eeecccccccce
Q 038204 98 VSFRNLTDLQVWGCKELMKLVTSSTAKSLVRLR---IMKVCGSRAMTQVVTSEKDGAEDEIVFSNLK-ALTLLDLDSLTS 173 (254)
Q Consensus 98 ~~~~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~---~L~i~~C~~l~~i~~~~~~~~~~~~~~~~L~-~L~l~~c~~L~~ 173 (254)
..+++|++|+++++. ++.++. ...+++|+ .|+++++..+..++.. ....+++|+ .|++.+. +++.
T Consensus 102 ~~l~~L~~L~l~~n~-l~~lp~---~~~l~~L~~L~~L~l~~N~~l~~i~~~------~~~~l~~L~~~L~l~~n-~l~~ 170 (239)
T 2xwt_C 102 KELPLLKFLGIFNTG-LKMFPD---LTKVYSTDIFFILEITDNPYMTSIPVN------AFQGLCNETLTLKLYNN-GFTS 170 (239)
T ss_dssp ECCTTCCEEEEEEEC-CCSCCC---CTTCCBCCSEEEEEEESCTTCCEECTT------TTTTTBSSEEEEECCSC-CCCE
T ss_pred CCCCCCCEEeCCCCC-Cccccc---cccccccccccEEECCCCcchhhcCcc------cccchhcceeEEEcCCC-CCcc
Confidence 678888888888774 555533 44556666 8888887566665431 223466677 7777654 5566
Q ss_pred ecCCCccccCCCcCeEEEeCCCCCcccCCCC
Q 038204 174 FCSGNYTFKFPSLRDLEVIGCPKMKIFTTGE 204 (254)
Q Consensus 174 ~~~~~~~~~~~sL~~L~i~~Cp~L~~lp~~~ 204 (254)
++... ...++|++|++++++.++.+|...
T Consensus 171 i~~~~--~~~~~L~~L~L~~n~~l~~i~~~~ 199 (239)
T 2xwt_C 171 VQGYA--FNGTKLDAVYLNKNKYLTVIDKDA 199 (239)
T ss_dssp ECTTT--TTTCEEEEEECTTCTTCCEECTTT
T ss_pred cCHhh--cCCCCCCEEEcCCCCCcccCCHHH
Confidence 65533 233567777777776676666543
No 6
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.45 E-value=1.3e-12 Score=106.51 Aligned_cols=186 Identities=14% Similarity=0.112 Sum_probs=137.9
Q ss_pred CCceechHHHhhCCCCcEEEEecc-cceEecCCCCccccccCCCCcccEEeccCCcccccccccCCccccCCCCccEEEE
Q 038204 5 DSACFPLGLLEKFRNLEILYLSRT-SYTEILSNEGHSEKHVGKFSQVKHLQPYKLNDLKQLWKQGSKLDFIFTNLEILRV 83 (254)
Q Consensus 5 ~~~~~P~~~~~~l~~L~~L~l~~c-~l~~l~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~l~~~~~~~~~~~~~L~~L~l 83 (254)
.-..+|...+..+++|++|++++| .++.+... ..+.+++|++|++.+|..++.+... ....+++|++|++
T Consensus 42 ~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~------~f~~l~~L~~L~l~~~n~l~~i~~~---~f~~l~~L~~L~l 112 (239)
T 2xwt_C 42 HLRTIPSHAFSNLPNISRIYVSIDVTLQQLESH------SFYNLSKVTHIEIRNTRNLTYIDPD---ALKELPLLKFLGI 112 (239)
T ss_dssp CCSEECTTTTTTCTTCCEEEEECCSSCCEECTT------TEESCTTCCEEEEEEETTCCEECTT---SEECCTTCCEEEE
T ss_pred cceEECHHHccCCCCCcEEeCCCCCCcceeCHh------HcCCCcCCcEEECCCCCCeeEcCHH---HhCCCCCCCEEeC
Confidence 334567666678999999999999 49888651 2456899999999987788876432 2356899999999
Q ss_pred ecCCCcceecCCccccccccc---EEEeeccccccccccchhhccccccc-eeEEecCCCceeEeecCCCCccccccccc
Q 038204 84 YCCQNLIVLLPSSSVSFRNLT---DLQVWGCKELMKLVTSSTAKSLVRLR-IMKVCGSRAMTQVVTSEKDGAEDEIVFSN 159 (254)
Q Consensus 84 ~~C~~L~~l~p~~~~~~~~L~---~L~i~~C~~L~~l~~~~~~~~l~~L~-~L~i~~C~~l~~i~~~~~~~~~~~~~~~~ 159 (254)
.++. ++.+ |. +..+++|+ .|+++++++++.++. .....+++|+ .|+++++. ++.++. .....++
T Consensus 113 ~~n~-l~~l-p~-~~~l~~L~~L~~L~l~~N~~l~~i~~-~~~~~l~~L~~~L~l~~n~-l~~i~~-------~~~~~~~ 180 (239)
T 2xwt_C 113 FNTG-LKMF-PD-LTKVYSTDIFFILEITDNPYMTSIPV-NAFQGLCNETLTLKLYNNG-FTSVQG-------YAFNGTK 180 (239)
T ss_dssp EEEC-CCSC-CC-CTTCCBCCSEEEEEEESCTTCCEECT-TTTTTTBSSEEEEECCSCC-CCEECT-------TTTTTCE
T ss_pred CCCC-Cccc-cc-cccccccccccEEECCCCcchhhcCc-ccccchhcceeEEEcCCCC-CcccCH-------hhcCCCC
Confidence 9974 6666 55 67788888 999999978887754 3457899999 99999875 555543 1112378
Q ss_pred cceeecccccccceecCCCccccC-CCcCeEEEeCCCCCcccCCCCCCCCCeEEE
Q 038204 160 LKALTLLDLDSLTSFCSGNYTFKF-PSLRDLEVIGCPKMKIFTTGELCTPPRVNV 213 (254)
Q Consensus 160 L~~L~l~~c~~L~~~~~~~~~~~~-~sL~~L~i~~Cp~L~~lp~~~~~~~~~~~i 213 (254)
|+.|++.++++++.++... ...+ ++|+.|+++++ +++.+|......-..+.+
T Consensus 181 L~~L~L~~n~~l~~i~~~~-~~~l~~~L~~L~l~~N-~l~~l~~~~~~~L~~L~l 233 (239)
T 2xwt_C 181 LDAVYLNKNKYLTVIDKDA-FGGVYSGPSLLDVSQT-SVTALPSKGLEHLKELIA 233 (239)
T ss_dssp EEEEECTTCTTCCEECTTT-TTTCSBCCSEEECTTC-CCCCCCCTTCTTCSEEEC
T ss_pred CCEEEcCCCCCcccCCHHH-hhccccCCcEEECCCC-ccccCChhHhccCceeec
Confidence 9999999998899887653 2456 89999999986 578888763322224444
No 7
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.44 E-value=3.4e-12 Score=106.63 Aligned_cols=194 Identities=17% Similarity=0.131 Sum_probs=105.0
Q ss_pred chHHHhhCCCCcEEEEecccceEecCCCCccccccCCCCcccEEeccCCcccccccccCCccccCCCCccEEEEecCCCc
Q 038204 10 PLGLLEKFRNLEILYLSRTSYTEILSNEGHSEKHVGKFSQVKHLQPYKLNDLKQLWKQGSKLDFIFTNLEILRVYCCQNL 89 (254)
Q Consensus 10 P~~~~~~l~~L~~L~l~~c~l~~l~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~l~~~~~~~~~~~~~L~~L~l~~C~~L 89 (254)
|...+..+++|++|++++|.++.+.+ ..++.+++|++|++.++..++.+.. .....+++|++|+++++. +
T Consensus 48 ~~~~~~~~~~L~~L~l~~n~l~~~~~------~~~~~l~~L~~L~l~~n~~l~~~~~---~~~~~l~~L~~L~l~~n~-l 117 (285)
T 1ozn_A 48 PAASFRACRNLTILWLHSNVLARIDA------AAFTGLALLEQLDLSDNAQLRSVDP---ATFHGLGRLHTLHLDRCG-L 117 (285)
T ss_dssp CTTTTTTCTTCCEEECCSSCCCEECT------TTTTTCTTCCEEECCSCTTCCCCCT---TTTTTCTTCCEEECTTSC-C
T ss_pred CHHHcccCCCCCEEECCCCccceeCH------hhcCCccCCCEEeCCCCCCccccCH---HHhcCCcCCCEEECCCCc-C
Confidence 33333455555555555554444422 1233456666666666544444311 113345666666666653 3
Q ss_pred ceecCCcccccccccEEEeeccccccccccchhhccccccceeEEecCCCceeEeecCCCCccccccccccceeeccccc
Q 038204 90 IVLLPSSSVSFRNLTDLQVWGCKELMKLVTSSTAKSLVRLRIMKVCGSRAMTQVVTSEKDGAEDEIVFSNLKALTLLDLD 169 (254)
Q Consensus 90 ~~l~p~~~~~~~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~C~~l~~i~~~~~~~~~~~~~~~~L~~L~l~~c~ 169 (254)
+.+.|..+..+++|++|+++++. ++.++. .....+++|++|+++++. +..++. .....+++|+.|++.++
T Consensus 118 ~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~-~~~~~l~~L~~L~l~~n~-l~~~~~------~~~~~l~~L~~L~l~~n- 187 (285)
T 1ozn_A 118 QELGPGLFRGLAALQYLYLQDNA-LQALPD-DTFRDLGNLTHLFLHGNR-ISSVPE------RAFRGLHSLDRLLLHQN- 187 (285)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSC-CCCCCT-TTTTTCTTCCEEECCSSC-CCEECT------TTTTTCTTCCEEECCSS-
T ss_pred CEECHhHhhCCcCCCEEECCCCc-ccccCH-hHhccCCCccEEECCCCc-ccccCH------HHhcCccccCEEECCCC-
Confidence 44434445556667777776653 333322 234556677777777663 444332 12334678888888876
Q ss_pred ccceecCCCccccCCCcCeEEEeCCCCCcccCCC-CCCCCC--eEEEeeCCCCCcccccccHH
Q 038204 170 SLTSFCSGNYTFKFPSLRDLEVIGCPKMKIFTTG-ELCTPP--RVNVWYGEGDGECRWANDLN 229 (254)
Q Consensus 170 ~L~~~~~~~~~~~~~sL~~L~i~~Cp~L~~lp~~-~~~~~~--~~~i~~~~~~~~~~~~~d~~ 229 (254)
+++.+.... ...+++|+.|+++++ +++.+|.. ....+. .+.+ .+..|.+++++.
T Consensus 188 ~l~~~~~~~-~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l----~~N~~~c~~~~~ 244 (285)
T 1ozn_A 188 RVAHVHPHA-FRDLGRLMTLYLFAN-NLSALPTEALAPLRALQYLRL----NDNPWVCDCRAR 244 (285)
T ss_dssp CCCEECTTT-TTTCTTCCEEECCSS-CCSCCCHHHHTTCTTCCEEEC----CSSCEECSGGGH
T ss_pred cccccCHhH-ccCcccccEeeCCCC-cCCcCCHHHcccCcccCEEec----cCCCccCCCCcH
Confidence 455553322 246788999999888 46666543 222333 5555 344566666544
No 8
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.38 E-value=3.2e-12 Score=101.20 Aligned_cols=152 Identities=15% Similarity=0.163 Sum_probs=113.2
Q ss_pred hhCCCCcEEEEecccceEecCCCCccccccCCCCcccEEeccCCcccccccccCCccccCCCCccEEEEecCCCcceecC
Q 038204 15 EKFRNLEILYLSRTSYTEILSNEGHSEKHVGKFSQVKHLQPYKLNDLKQLWKQGSKLDFIFTNLEILRVYCCQNLIVLLP 94 (254)
Q Consensus 15 ~~l~~L~~L~l~~c~l~~l~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~l~~~~~~~~~~~~~L~~L~l~~C~~L~~l~p 94 (254)
..+++|++|++++|.+..++. +..+++|++|++.++ .++.+ .....+++|++|+++++ +++...+
T Consensus 41 ~~l~~L~~L~l~~n~i~~l~~--------l~~l~~L~~L~l~~n-~~~~~-----~~l~~l~~L~~L~l~~n-~l~~~~~ 105 (197)
T 4ezg_A 41 AQMNSLTYITLANINVTDLTG--------IEYAHNIKDLTINNI-HATNY-----NPISGLSNLERLRIMGK-DVTSDKI 105 (197)
T ss_dssp HHHHTCCEEEEESSCCSCCTT--------GGGCTTCSEEEEESC-CCSCC-----GGGTTCTTCCEEEEECT-TCBGGGS
T ss_pred hhcCCccEEeccCCCccChHH--------HhcCCCCCEEEccCC-CCCcc-----hhhhcCCCCCEEEeECC-ccCcccC
Confidence 467899999999997776543 566899999999988 55543 23566899999999996 4554335
Q ss_pred CcccccccccEEEeeccccccccccchhhccccccceeEEecCCCceeEeecCCCCccccccccccceeeccccccccee
Q 038204 95 SSSVSFRNLTDLQVWGCKELMKLVTSSTAKSLVRLRIMKVCGSRAMTQVVTSEKDGAEDEIVFSNLKALTLLDLDSLTSF 174 (254)
Q Consensus 95 ~~~~~~~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~C~~l~~i~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~ 174 (254)
..+..+++|++|++++|. ++... ......+++|+.|++++|..+..+. ....+++|+.|++.++ .++++
T Consensus 106 ~~l~~l~~L~~L~Ls~n~-i~~~~-~~~l~~l~~L~~L~L~~n~~i~~~~--------~l~~l~~L~~L~l~~n-~i~~~ 174 (197)
T 4ezg_A 106 PNLSGLTSLTLLDISHSA-HDDSI-LTKINTLPKVNSIDLSYNGAITDIM--------PLKTLPELKSLNIQFD-GVHDY 174 (197)
T ss_dssp CCCTTCTTCCEEECCSSB-CBGGG-HHHHTTCSSCCEEECCSCTBCCCCG--------GGGGCSSCCEEECTTB-CCCCC
T ss_pred hhhcCCCCCCEEEecCCc-cCcHh-HHHHhhCCCCCEEEccCCCCccccH--------hhcCCCCCCEEECCCC-CCcCh
Confidence 557889999999999985 44322 2456789999999999997555442 3446889999999987 56665
Q ss_pred cCCCccccCCCcCeEEEeCCC
Q 038204 175 CSGNYTFKFPSLRDLEVIGCP 195 (254)
Q Consensus 175 ~~~~~~~~~~sL~~L~i~~Cp 195 (254)
+ ....+++|++|++++.+
T Consensus 175 ~---~l~~l~~L~~L~l~~N~ 192 (197)
T 4ezg_A 175 R---GIEDFPKLNQLYAFSQT 192 (197)
T ss_dssp T---TGGGCSSCCEEEECBC-
T ss_pred H---HhccCCCCCEEEeeCcc
Confidence 4 23578999999998764
No 9
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.37 E-value=1.8e-11 Score=101.67 Aligned_cols=183 Identities=18% Similarity=0.152 Sum_probs=129.8
Q ss_pred CCCcEEEEecccceEecCCCCccccccCCCCcccEEeccCCcccccccccCCccccCCCCccEEEEecCCCcceecCCcc
Q 038204 18 RNLEILYLSRTSYTEILSNEGHSEKHVGKFSQVKHLQPYKLNDLKQLWKQGSKLDFIFTNLEILRVYCCQNLIVLLPSSS 97 (254)
Q Consensus 18 ~~L~~L~l~~c~l~~l~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~l~~~~~~~~~~~~~L~~L~l~~C~~L~~l~p~~~ 97 (254)
++|++|+++++.+..++. ..++.+++|++|++.++ .++.+... ....+++|++|+++++ .++.+.+..+
T Consensus 37 ~~l~~L~l~~n~l~~~~~------~~~~~l~~L~~L~l~~n-~l~~i~~~---~~~~l~~L~~L~l~~n-~l~~~~~~~~ 105 (270)
T 2o6q_A 37 ADTKKLDLQSNKLSSLPS------KAFHRLTKLRLLYLNDN-KLQTLPAG---IFKELKNLETLWVTDN-KLQALPIGVF 105 (270)
T ss_dssp TTCSEEECCSSCCSCCCT------TSSSSCTTCCEEECCSS-CCSCCCTT---TTSSCTTCCEEECCSS-CCCCCCTTTT
T ss_pred CCCCEEECcCCCCCeeCH------HHhcCCCCCCEEECCCC-ccCeeChh---hhcCCCCCCEEECCCC-cCCcCCHhHc
Confidence 579999999997776654 13557899999999875 45554322 1356899999999987 4666655546
Q ss_pred cccccccEEEeeccccccccccchhhccccccceeEEecCCCceeEeecCCCCccccccccccceeecccccccceecCC
Q 038204 98 VSFRNLTDLQVWGCKELMKLVTSSTAKSLVRLRIMKVCGSRAMTQVVTSEKDGAEDEIVFSNLKALTLLDLDSLTSFCSG 177 (254)
Q Consensus 98 ~~~~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~C~~l~~i~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~ 177 (254)
..+++|++|+++++. ++.+++ .....+++|++|+++++. +..++. .....+++|+.|++.++ +++.++..
T Consensus 106 ~~l~~L~~L~l~~n~-l~~~~~-~~~~~l~~L~~L~Ls~n~-l~~~~~------~~~~~l~~L~~L~L~~n-~l~~~~~~ 175 (270)
T 2o6q_A 106 DQLVNLAELRLDRNQ-LKSLPP-RVFDSLTKLTYLSLGYNE-LQSLPK------GVFDKLTSLKELRLYNN-QLKRVPEG 175 (270)
T ss_dssp TTCSSCCEEECCSSC-CCCCCT-TTTTTCTTCCEEECCSSC-CCCCCT------TTTTTCTTCCEEECCSS-CCSCCCTT
T ss_pred ccccCCCEEECCCCc-cCeeCH-HHhCcCcCCCEEECCCCc-CCccCH------hHccCCcccceeEecCC-cCcEeChh
Confidence 789999999999874 555543 345789999999999985 544432 12345799999999987 67776654
Q ss_pred CccccCCCcCeEEEeCCCCCcccCCCCCC-CCC--eEEEeeCCCCCccccccc
Q 038204 178 NYTFKFPSLRDLEVIGCPKMKIFTTGELC-TPP--RVNVWYGEGDGECRWAND 227 (254)
Q Consensus 178 ~~~~~~~sL~~L~i~~Cp~L~~lp~~~~~-~~~--~~~i~~~~~~~~~~~~~d 227 (254)
. ...+++|++|+++++ +++.+|.+... .+. .+.+ .+..|.++++
T Consensus 176 ~-~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l----~~N~~~c~c~ 222 (270)
T 2o6q_A 176 A-FDKLTELKTLKLDNN-QLKRVPEGAFDSLEKLKMLQL----QENPWDCTCN 222 (270)
T ss_dssp T-TTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEEC----CSSCBCCSSS
T ss_pred H-hccCCCcCEEECCCC-cCCcCCHHHhccccCCCEEEe----cCCCeeCCCc
Confidence 2 246789999999998 67888876433 333 5555 3446666654
No 10
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.36 E-value=1.1e-13 Score=118.07 Aligned_cols=112 Identities=15% Similarity=0.155 Sum_probs=51.7
Q ss_pred hCCCCcEEEEecccceE--ecCCCCccccccCCCCcccEEeccCCcccccccccCCccccCCCCccEEEEecCCCccee-
Q 038204 16 KFRNLEILYLSRTSYTE--ILSNEGHSEKHVGKFSQVKHLQPYKLNDLKQLWKQGSKLDFIFTNLEILRVYCCQNLIVL- 92 (254)
Q Consensus 16 ~l~~L~~L~l~~c~l~~--l~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~l~~~~~~~~~~~~~L~~L~l~~C~~L~~l- 92 (254)
.+++|++|++++|.+.. ++. .++.+++|++|++.++. +.... ......+++|++|++++|..+++.
T Consensus 91 ~~~~L~~L~L~~~~l~~~~~~~-------~~~~~~~L~~L~L~~~~-l~~~~---~~~l~~~~~L~~L~L~~~~~l~~~~ 159 (336)
T 2ast_B 91 SPFRVQHMDLSNSVIEVSTLHG-------ILSQCSKLQNLSLEGLR-LSDPI---VNTLAKNSNLVRLNLSGCSGFSEFA 159 (336)
T ss_dssp CCBCCCEEECTTCEECHHHHHH-------HHTTBCCCSEEECTTCB-CCHHH---HHHHTTCTTCSEEECTTCBSCCHHH
T ss_pred cCCCCCEEEccCCCcCHHHHHH-------HHhhCCCCCEEeCcCcc-cCHHH---HHHHhcCCCCCEEECCCCCCCCHHH
Confidence 45666666666664321 111 13345566666665552 22110 111223555666666655544421
Q ss_pred cCCcccccccccEEEeeccccccccccchhhcccc-ccceeEEecCC
Q 038204 93 LPSSSVSFRNLTDLQVWGCKELMKLVTSSTAKSLV-RLRIMKVCGSR 138 (254)
Q Consensus 93 ~p~~~~~~~~L~~L~i~~C~~L~~l~~~~~~~~l~-~L~~L~i~~C~ 138 (254)
.+..+..+++|++|++++|..++..........++ +|++|++++|.
T Consensus 160 l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~ 206 (336)
T 2ast_B 160 LQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYR 206 (336)
T ss_dssp HHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCG
T ss_pred HHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCc
Confidence 02223445555555555554444321123344555 55555555553
No 11
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.36 E-value=3.3e-11 Score=100.18 Aligned_cols=147 Identities=14% Similarity=0.118 Sum_probs=74.7
Q ss_pred CCCCccEEEEecCCCcceecCCcccccccccEEEeeccccccccccchhhccccccceeEEecCCCceeEeecCCCCccc
Q 038204 74 IFTNLEILRVYCCQNLIVLLPSSSVSFRNLTDLQVWGCKELMKLVTSSTAKSLVRLRIMKVCGSRAMTQVVTSEKDGAED 153 (254)
Q Consensus 74 ~~~~L~~L~l~~C~~L~~l~p~~~~~~~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~C~~l~~i~~~~~~~~~~ 153 (254)
.+++|++|++.++ ++..+.+..+..+++|++|+++++. ++.+........+++|++|+++++. +..+.. ..
T Consensus 98 ~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~l~~~~~~l~~L~~L~Ls~N~-l~~~~~------~~ 168 (276)
T 2z62_A 98 GLSSLQKLVAVET-NLASLENFPIGHLKTLKELNVAHNL-IQSFKLPEYFSNLTNLEHLDLSSNK-IQSIYC------TD 168 (276)
T ss_dssp TCTTCCEEECTTS-CCCCSTTCCCTTCTTCCEEECCSSC-CCCCCCCGGGGGCTTCCEEECCSSC-CCEECG------GG
T ss_pred CCccccEEECCCC-CccccCchhcccCCCCCEEECcCCc-cceecCchhhccCCCCCEEECCCCC-CCcCCH------HH
Confidence 3455555555554 2333323234455666666665553 3332112334556666666666653 333321 12
Q ss_pred cccccccc----eeecccccccceecCCCccccCCCcCeEEEeCCCCCcccCCCCC-CCCC--eEEEeeCCCCCcccccc
Q 038204 154 EIVFSNLK----ALTLLDLDSLTSFCSGNYTFKFPSLRDLEVIGCPKMKIFTTGEL-CTPP--RVNVWYGEGDGECRWAN 226 (254)
Q Consensus 154 ~~~~~~L~----~L~l~~c~~L~~~~~~~~~~~~~sL~~L~i~~Cp~L~~lp~~~~-~~~~--~~~i~~~~~~~~~~~~~ 226 (254)
...+++|+ +|++.+. .++.++... ....+|++|+++++. ++.+|.... ..+. .+.+ .+..|.+++
T Consensus 169 ~~~l~~L~~l~l~L~ls~n-~l~~~~~~~--~~~~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l----~~N~~~c~c 240 (276)
T 2z62_A 169 LRVLHQMPLLNLSLDLSLN-PMNFIQPGA--FKEIRLKELALDTNQ-LKSVPDGIFDRLTSLQKIWL----HTNPWDCSC 240 (276)
T ss_dssp GHHHHTCTTCCEEEECCSS-CCCEECTTS--SCSCCEEEEECCSSC-CSCCCTTTTTTCCSCCEEEC----CSSCBCCCT
T ss_pred hhhhhhccccceeeecCCC-cccccCccc--cCCCcccEEECCCCc-eeecCHhHhcccccccEEEc----cCCcccccC
Confidence 22334444 5556554 455555433 344589999999885 888887643 2333 5555 344565555
Q ss_pred cHHHHHHHHHH
Q 038204 227 DLNVTIQELHA 237 (254)
Q Consensus 227 d~~~~i~~~~~ 237 (254)
+.-..+..|..
T Consensus 241 ~~l~~l~~~~~ 251 (276)
T 2z62_A 241 PRIDYLSRWLN 251 (276)
T ss_dssp TTTHHHHHHHH
T ss_pred CchHHHHHHHH
Confidence 42234444443
No 12
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.36 E-value=1.7e-11 Score=104.14 Aligned_cols=181 Identities=15% Similarity=0.084 Sum_probs=115.2
Q ss_pred echHHHhhCCCCcEEEEecccceEecCCCCccccccCCCCcccEEeccCCccccccccc---------C----CccccCC
Q 038204 9 FPLGLLEKFRNLEILYLSRTSYTEILSNEGHSEKHVGKFSQVKHLQPYKLNDLKQLWKQ---------G----SKLDFIF 75 (254)
Q Consensus 9 ~P~~~~~~l~~L~~L~l~~c~l~~l~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~l~~~---------~----~~~~~~~ 75 (254)
+++..+..+++|++|++++|.+..+++ ++.+++|++|+++++. ++.+... . ......+
T Consensus 49 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~--------~~~l~~L~~L~Ls~n~-l~~l~~~~~L~~L~l~~n~l~~~~~~~~ 119 (317)
T 3o53_A 49 ISAADLAPFTKLELLNLSSNVLYETLD--------LESLSTLRTLDLNNNY-VQELLVGPSIETLHAANNNISRVSCSRG 119 (317)
T ss_dssp CCHHHHTTCTTCCEEECTTSCCEEEEE--------ETTCTTCCEEECCSSE-EEEEEECTTCCEEECCSSCCSEEEECCC
T ss_pred CCHHHhhCCCcCCEEECCCCcCCcchh--------hhhcCCCCEEECcCCc-cccccCCCCcCEEECCCCccCCcCcccc
Confidence 444455678888888888886665443 3456777777776552 2222100 0 0001235
Q ss_pred CCccEEEEecCCCcceecCCcccccccccEEEeeccccccccccchhhccccccceeEEecCCCceeEeecCCCCccccc
Q 038204 76 TNLEILRVYCCQNLIVLLPSSSVSFRNLTDLQVWGCKELMKLVTSSTAKSLVRLRIMKVCGSRAMTQVVTSEKDGAEDEI 155 (254)
Q Consensus 76 ~~L~~L~l~~C~~L~~l~p~~~~~~~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~C~~l~~i~~~~~~~~~~~~ 155 (254)
++|++|+++++ +++.+.+..+..+++|+.|+++++ .++.+.+......+++|++|++++|. +..+.. ..
T Consensus 120 ~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~--------~~ 188 (317)
T 3o53_A 120 QGKKNIYLANN-KITMLRDLDEGCRSRVQYLDLKLN-EIDTVNFAELAASSDTLEHLNLQYNF-IYDVKG--------QV 188 (317)
T ss_dssp SSCEEEECCSS-CCCSGGGBCTGGGSSEEEEECTTS-CCCEEEGGGGGGGTTTCCEEECTTSC-CCEEEC--------CC
T ss_pred CCCCEEECCCC-CCCCccchhhhccCCCCEEECCCC-CCCcccHHHHhhccCcCCEEECCCCc-Cccccc--------cc
Confidence 66677777665 344443444566788888888877 45555444444577888888888885 555532 22
Q ss_pred cccccceeecccccccceecCCCccccCCCcCeEEEeCCCCCcccCCCCCCCCC--eEEE
Q 038204 156 VFSNLKALTLLDLDSLTSFCSGNYTFKFPSLRDLEVIGCPKMKIFTTGELCTPP--RVNV 213 (254)
Q Consensus 156 ~~~~L~~L~l~~c~~L~~~~~~~~~~~~~sL~~L~i~~Cp~L~~lp~~~~~~~~--~~~i 213 (254)
.+++|+.|++.++ +++.++.. ...+++|++|+++++ +++.+|......+. .+.+
T Consensus 189 ~l~~L~~L~Ls~N-~l~~l~~~--~~~l~~L~~L~L~~N-~l~~l~~~~~~l~~L~~L~l 244 (317)
T 3o53_A 189 VFAKLKTLDLSSN-KLAFMGPE--FQSAAGVTWISLRNN-KLVLIEKALRFSQNLEHFDL 244 (317)
T ss_dssp CCTTCCEEECCSS-CCCEECGG--GGGGTTCSEEECTTS-CCCEECTTCCCCTTCCEEEC
T ss_pred ccccCCEEECCCC-cCCcchhh--hcccCcccEEECcCC-cccchhhHhhcCCCCCEEEc
Confidence 4789999999987 77777654 357799999999998 67788876544444 5555
No 13
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.36 E-value=1.8e-11 Score=108.63 Aligned_cols=161 Identities=16% Similarity=0.165 Sum_probs=102.8
Q ss_pred eechHHHhhCCCCcEEEEecccceEecCCCCccccccCCCCcccEEeccCCcccccccccCCccccCCCCccEEEEecCC
Q 038204 8 CFPLGLLEKFRNLEILYLSRTSYTEILSNEGHSEKHVGKFSQVKHLQPYKLNDLKQLWKQGSKLDFIFTNLEILRVYCCQ 87 (254)
Q Consensus 8 ~~P~~~~~~l~~L~~L~l~~c~l~~l~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~l~~~~~~~~~~~~~L~~L~l~~C~ 87 (254)
.+|..+. ++++.|+|++++++.+.. ..++.+++|++|+|+++ .++.+.. .....+++|++|+++++
T Consensus 57 ~iP~~~~---~~l~~L~L~~n~i~~~~~------~~~~~l~~L~~L~Ls~n-~i~~i~~---~~~~~l~~L~~L~L~~n- 122 (440)
T 3zyj_A 57 EVPDGIS---TNTRLLNLHENQIQIIKV------NSFKHLRHLEILQLSRN-HIRTIEI---GAFNGLANLNTLELFDN- 122 (440)
T ss_dssp SCCSCCC---TTCSEEECCSCCCCEECT------TTTSSCSSCCEEECCSS-CCCEECG---GGGTTCSSCCEEECCSS-
T ss_pred cCCCCCC---CCCcEEEccCCcCCeeCH------HHhhCCCCCCEEECCCC-cCCccCh---hhccCCccCCEEECCCC-
Confidence 4565442 789999999998887764 23567999999999886 4555422 22456889999999886
Q ss_pred CcceecCCcccccccccEEEeeccccccccccchhhccccccceeEEecCCCceeEeecCCCCccccccccccceeeccc
Q 038204 88 NLIVLLPSSSVSFRNLTDLQVWGCKELMKLVTSSTAKSLVRLRIMKVCGSRAMTQVVTSEKDGAEDEIVFSNLKALTLLD 167 (254)
Q Consensus 88 ~L~~l~p~~~~~~~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~C~~l~~i~~~~~~~~~~~~~~~~L~~L~l~~ 167 (254)
+++.+.+..+..+++|++|+++++. ++.++. .....+++|+.|++++|..+..+... ....+++|+.|++.+
T Consensus 123 ~l~~~~~~~~~~l~~L~~L~L~~N~-i~~~~~-~~~~~l~~L~~L~l~~~~~l~~i~~~------~~~~l~~L~~L~L~~ 194 (440)
T 3zyj_A 123 RLTTIPNGAFVYLSKLKELWLRNNP-IESIPS-YAFNRIPSLRRLDLGELKRLSYISEG------AFEGLSNLRYLNLAM 194 (440)
T ss_dssp CCSSCCTTTSCSCSSCCEEECCSCC-CCEECT-TTTTTCTTCCEEECCCCTTCCEECTT------TTTTCSSCCEEECTT
T ss_pred cCCeeCHhHhhccccCceeeCCCCc-ccccCH-HHhhhCcccCEeCCCCCCCcceeCcc------hhhcccccCeecCCC
Confidence 6777755456778888888888774 555433 34567788888888887776655431 122345555555554
Q ss_pred ccccceecCCCccccCCCcCeEEEeCC
Q 038204 168 LDSLTSFCSGNYTFKFPSLRDLEVIGC 194 (254)
Q Consensus 168 c~~L~~~~~~~~~~~~~sL~~L~i~~C 194 (254)
+ +++.++. ...+++|++|+++++
T Consensus 195 n-~l~~~~~---~~~l~~L~~L~Ls~N 217 (440)
T 3zyj_A 195 C-NLREIPN---LTPLIKLDELDLSGN 217 (440)
T ss_dssp S-CCSSCCC---CTTCSSCCEEECTTS
T ss_pred C-cCccccc---cCCCcccCEEECCCC
Confidence 4 3333332 123344444444444
No 14
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.35 E-value=2e-11 Score=108.64 Aligned_cols=132 Identities=14% Similarity=0.078 Sum_probs=97.8
Q ss_pred CCCcEEEEecccceEecCCCCccccccCCCCcccEEeccCCcccccccccCCccccCCCCccEEEEecCCCcceecCCcc
Q 038204 18 RNLEILYLSRTSYTEILSNEGHSEKHVGKFSQVKHLQPYKLNDLKQLWKQGSKLDFIFTNLEILRVYCCQNLIVLLPSSS 97 (254)
Q Consensus 18 ~~L~~L~l~~c~l~~l~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~l~~~~~~~~~~~~~L~~L~l~~C~~L~~l~p~~~ 97 (254)
++|+.|+|++++++.+.. ..++.+++|++|+|+++ .++.+... ....+++|++|+++++ +++.+.+..+
T Consensus 75 ~~l~~L~L~~n~i~~~~~------~~~~~l~~L~~L~Ls~n-~i~~~~~~---~~~~l~~L~~L~L~~n-~l~~~~~~~~ 143 (452)
T 3zyi_A 75 SNTRYLNLMENNIQMIQA------DTFRHLHHLEVLQLGRN-SIRQIEVG---AFNGLASLNTLELFDN-WLTVIPSGAF 143 (452)
T ss_dssp TTCSEEECCSSCCCEECT------TTTTTCTTCCEEECCSS-CCCEECTT---TTTTCTTCCEEECCSS-CCSBCCTTTS
T ss_pred CCccEEECcCCcCceECH------HHcCCCCCCCEEECCCC-ccCCcChh---hccCcccCCEEECCCC-cCCccChhhh
Confidence 689999999998887754 13567999999999886 55555322 2456899999999997 4777755557
Q ss_pred cccccccEEEeeccccccccccchhhccccccceeEEecCCCceeEeecCCCCccccccccccceeecccc
Q 038204 98 VSFRNLTDLQVWGCKELMKLVTSSTAKSLVRLRIMKVCGSRAMTQVVTSEKDGAEDEIVFSNLKALTLLDL 168 (254)
Q Consensus 98 ~~~~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~C~~l~~i~~~~~~~~~~~~~~~~L~~L~l~~c 168 (254)
..+++|++|+++++. ++.++. .....+++|+.|++++|..+..+... ....+++|+.|++.++
T Consensus 144 ~~l~~L~~L~L~~N~-l~~~~~-~~~~~l~~L~~L~l~~~~~l~~i~~~------~~~~l~~L~~L~L~~n 206 (452)
T 3zyi_A 144 EYLSKLRELWLRNNP-IESIPS-YAFNRVPSLMRLDLGELKKLEYISEG------AFEGLFNLKYLNLGMC 206 (452)
T ss_dssp SSCTTCCEEECCSCC-CCEECT-TTTTTCTTCCEEECCCCTTCCEECTT------TTTTCTTCCEEECTTS
T ss_pred cccCCCCEEECCCCC-cceeCH-hHHhcCCcccEEeCCCCCCccccChh------hccCCCCCCEEECCCC
Confidence 789999999999885 666543 35678999999999999888776531 1223455555555544
No 15
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.34 E-value=8e-12 Score=103.73 Aligned_cols=167 Identities=20% Similarity=0.209 Sum_probs=123.0
Q ss_pred ceechHHHhhCCCCcEEEEecccceEecCCCCccccccCCCCcccEEeccCCcccccccccCCccccCCCCccEEEEecC
Q 038204 7 ACFPLGLLEKFRNLEILYLSRTSYTEILSNEGHSEKHVGKFSQVKHLQPYKLNDLKQLWKQGSKLDFIFTNLEILRVYCC 86 (254)
Q Consensus 7 ~~~P~~~~~~l~~L~~L~l~~c~l~~l~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~l~~~~~~~~~~~~~L~~L~l~~C 86 (254)
..+|...+.++++|++|++++|.++.++.. ..+.+++|++|++.++ .++.+... ....+++|++|+++++
T Consensus 50 ~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~------~~~~l~~L~~L~l~~n-~l~~~~~~---~~~~l~~L~~L~l~~n 119 (270)
T 2o6q_A 50 SSLPSKAFHRLTKLRLLYLNDNKLQTLPAG------IFKELKNLETLWVTDN-KLQALPIG---VFDQLVNLAELRLDRN 119 (270)
T ss_dssp SCCCTTSSSSCTTCCEEECCSSCCSCCCTT------TTSSCTTCCEEECCSS-CCCCCCTT---TTTTCSSCCEEECCSS
T ss_pred CeeCHHHhcCCCCCCEEECCCCccCeeChh------hhcCCCCCCEEECCCC-cCCcCCHh---HcccccCCCEEECCCC
Confidence 345555567899999999999988766541 2356899999999876 35554221 2356899999999986
Q ss_pred CCcceecCCcccccccccEEEeeccccccccccchhhccccccceeEEecCCCceeEeecCCCCccccccccccceeecc
Q 038204 87 QNLIVLLPSSSVSFRNLTDLQVWGCKELMKLVTSSTAKSLVRLRIMKVCGSRAMTQVVTSEKDGAEDEIVFSNLKALTLL 166 (254)
Q Consensus 87 ~~L~~l~p~~~~~~~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~C~~l~~i~~~~~~~~~~~~~~~~L~~L~l~ 166 (254)
.++.+.+..+..+++|++|+++++ .++.++. .....+++|+.|+++++. +..+.. .....+++|+.|++.
T Consensus 120 -~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~-~~~~~l~~L~~L~L~~n~-l~~~~~------~~~~~l~~L~~L~L~ 189 (270)
T 2o6q_A 120 -QLKSLPPRVFDSLTKLTYLSLGYN-ELQSLPK-GVFDKLTSLKELRLYNNQ-LKRVPE------GAFDKLTELKTLKLD 189 (270)
T ss_dssp -CCCCCCTTTTTTCTTCCEEECCSS-CCCCCCT-TTTTTCTTCCEEECCSSC-CSCCCT------TTTTTCTTCCEEECC
T ss_pred -ccCeeCHHHhCcCcCCCEEECCCC-cCCccCH-hHccCCcccceeEecCCc-CcEeCh------hHhccCCCcCEEECC
Confidence 466665555678999999999998 4666643 345789999999999985 444332 123457899999999
Q ss_pred cccccceecCCCccccCCCcCeEEEeCCC
Q 038204 167 DLDSLTSFCSGNYTFKFPSLRDLEVIGCP 195 (254)
Q Consensus 167 ~c~~L~~~~~~~~~~~~~sL~~L~i~~Cp 195 (254)
++ +++.++... ...+++|+.|+++++|
T Consensus 190 ~N-~l~~~~~~~-~~~l~~L~~L~l~~N~ 216 (270)
T 2o6q_A 190 NN-QLKRVPEGA-FDSLEKLKMLQLQENP 216 (270)
T ss_dssp SS-CCSCCCTTT-TTTCTTCCEEECCSSC
T ss_pred CC-cCCcCCHHH-hccccCCCEEEecCCC
Confidence 87 777776643 2467899999998876
No 16
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.32 E-value=1.2e-11 Score=102.76 Aligned_cols=163 Identities=18% Similarity=0.172 Sum_probs=116.0
Q ss_pred hhCCCCcEEEEecccceEecCCCCccccccCCCCcccEEeccCCcccccccccCCccccCCCCccEEEEecCCCcceecC
Q 038204 15 EKFRNLEILYLSRTSYTEILSNEGHSEKHVGKFSQVKHLQPYKLNDLKQLWKQGSKLDFIFTNLEILRVYCCQNLIVLLP 94 (254)
Q Consensus 15 ~~l~~L~~L~l~~c~l~~l~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~l~~~~~~~~~~~~~L~~L~l~~C~~L~~l~p 94 (254)
..+++|+.|++.+|.++.+.. ++.+++|++|++.++. ++.+ .....+++|++|++++| .++.+.+
T Consensus 38 ~~l~~L~~L~l~~~~i~~~~~--------l~~l~~L~~L~l~~n~-l~~~-----~~l~~l~~L~~L~L~~n-~l~~~~~ 102 (272)
T 3rfs_A 38 NELNSIDQIIANNSDIKSVQG--------IQYLPNVRYLALGGNK-LHDI-----SALKELTNLTYLILTGN-QLQSLPN 102 (272)
T ss_dssp HHHTTCCEEECTTSCCCCCTT--------GGGCTTCCEEECTTSC-CCCC-----GGGTTCTTCCEEECTTS-CCCCCCT
T ss_pred ccccceeeeeeCCCCcccccc--------cccCCCCcEEECCCCC-CCCc-----hhhcCCCCCCEEECCCC-ccCccCh
Confidence 467899999999987665433 5568999999998763 4443 12566889999999987 5666655
Q ss_pred CcccccccccEEEeeccccccccccchhhccccccceeEEecCCCceeEeecCCCCccccccccccceeeccccccccee
Q 038204 95 SSSVSFRNLTDLQVWGCKELMKLVTSSTAKSLVRLRIMKVCGSRAMTQVVTSEKDGAEDEIVFSNLKALTLLDLDSLTSF 174 (254)
Q Consensus 95 ~~~~~~~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~C~~l~~i~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~ 174 (254)
..+..+++|++|++++|. ++.+++ .....+++|++|++++|. +..++. .....+++|+.|++.++ +++.+
T Consensus 103 ~~~~~l~~L~~L~L~~n~-l~~~~~-~~~~~l~~L~~L~L~~n~-l~~~~~------~~~~~l~~L~~L~l~~n-~l~~~ 172 (272)
T 3rfs_A 103 GVFDKLTNLKELVLVENQ-LQSLPD-GVFDKLTNLTYLNLAHNQ-LQSLPK------GVFDKLTNLTELDLSYN-QLQSL 172 (272)
T ss_dssp TTTTTCTTCCEEECTTSC-CCCCCT-TTTTTCTTCCEEECCSSC-CCCCCT------TTTTTCTTCCEEECCSS-CCCCC
T ss_pred hHhcCCcCCCEEECCCCc-CCccCH-HHhccCCCCCEEECCCCc-cCccCH------HHhccCccCCEEECCCC-CcCcc
Confidence 545778999999998884 555543 345678899999999884 544332 12345788999999987 67666
Q ss_pred cCCCccccCCCcCeEEEeCCCCCcccCCCC
Q 038204 175 CSGNYTFKFPSLRDLEVIGCPKMKIFTTGE 204 (254)
Q Consensus 175 ~~~~~~~~~~sL~~L~i~~Cp~L~~lp~~~ 204 (254)
+... ...+++|++|++++|. ++.++...
T Consensus 173 ~~~~-~~~l~~L~~L~L~~N~-l~~~~~~~ 200 (272)
T 3rfs_A 173 PEGV-FDKLTQLKDLRLYQNQ-LKSVPDGV 200 (272)
T ss_dssp CTTT-TTTCTTCCEEECCSSC-CSCCCTTT
T ss_pred CHHH-hcCCccCCEEECCCCc-CCccCHHH
Confidence 5532 2467889999998884 66666543
No 17
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.31 E-value=2.7e-11 Score=101.84 Aligned_cols=189 Identities=16% Similarity=0.116 Sum_probs=129.9
Q ss_pred CCCcEEEEecccceEecCCCCccccccCCCCcccEEeccCCcccccccccCCccccCCCCccEEEEecCCCcceecCCcc
Q 038204 18 RNLEILYLSRTSYTEILSNEGHSEKHVGKFSQVKHLQPYKLNDLKQLWKQGSKLDFIFTNLEILRVYCCQNLIVLLPSSS 97 (254)
Q Consensus 18 ~~L~~L~l~~c~l~~l~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~l~~~~~~~~~~~~~L~~L~l~~C~~L~~l~p~~~ 97 (254)
++++.|+++++.+..+.. ..+..+++|++|.+.+. .++.+.. ...+++|++|+++++ +++.+ |..+
T Consensus 31 ~~l~~L~L~~N~l~~~~~------~~~~~l~~L~~L~L~~n-~l~~~~~-----~~~l~~L~~L~Ls~N-~l~~l-~~~~ 96 (290)
T 1p9a_G 31 KDTTILHLSENLLYTFSL------ATLMPYTRLTQLNLDRA-ELTKLQV-----DGTLPVLGTLDLSHN-QLQSL-PLLG 96 (290)
T ss_dssp TTCCEEECTTSCCSEEEG------GGGTTCTTCCEEECTTS-CCCEEEC-----CSCCTTCCEEECCSS-CCSSC-CCCT
T ss_pred CCCCEEEcCCCcCCccCH------HHhhcCCCCCEEECCCC-ccCcccC-----CCCCCcCCEEECCCC-cCCcC-chhh
Confidence 566777777776555432 13556888999999775 4555422 256889999999986 56666 5557
Q ss_pred cccccccEEEeeccccccccccchhhccccccceeEEecCCCceeEeecCCCCccccccccccceeecccccccceecCC
Q 038204 98 VSFRNLTDLQVWGCKELMKLVTSSTAKSLVRLRIMKVCGSRAMTQVVTSEKDGAEDEIVFSNLKALTLLDLDSLTSFCSG 177 (254)
Q Consensus 98 ~~~~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~C~~l~~i~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~ 177 (254)
..+++|++|+++++ +++.+++ .....+++|+.|+++++. +..++. .....+++|+.|++.++ +++.++.+
T Consensus 97 ~~l~~L~~L~l~~N-~l~~l~~-~~~~~l~~L~~L~L~~N~-l~~~~~------~~~~~l~~L~~L~L~~N-~l~~l~~~ 166 (290)
T 1p9a_G 97 QTLPALTVLDVSFN-RLTSLPL-GALRGLGELQELYLKGNE-LKTLPP------GLLTPTPKLEKLSLANN-NLTELPAG 166 (290)
T ss_dssp TTCTTCCEEECCSS-CCCCCCS-STTTTCTTCCEEECTTSC-CCCCCT------TTTTTCTTCCEEECTTS-CCSCCCTT
T ss_pred ccCCCCCEEECCCC-cCcccCH-HHHcCCCCCCEEECCCCC-CCccCh------hhcccccCCCEEECCCC-cCCccCHH
Confidence 78899999999887 4666543 346788999999999984 544432 12345789999999986 78877764
Q ss_pred CccccCCCcCeEEEeCCCCCcccCCCCCCCCC--eEEEeeCCCCCcccccccHHHHHHHHHH
Q 038204 178 NYTFKFPSLRDLEVIGCPKMKIFTTGELCTPP--RVNVWYGEGDGECRWANDLNVTIQELHA 237 (254)
Q Consensus 178 ~~~~~~~sL~~L~i~~Cp~L~~lp~~~~~~~~--~~~i~~~~~~~~~~~~~d~~~~i~~~~~ 237 (254)
. ...+++|++|+++++ +++.+|.+....+. .+.+ .+..|.+++++. .++.|..
T Consensus 167 ~-~~~l~~L~~L~L~~N-~l~~ip~~~~~~~~L~~l~L----~~Np~~C~c~~~-~l~~wl~ 221 (290)
T 1p9a_G 167 L-LNGLENLDTLLLQEN-SLYTIPKGFFGSHLLPFAFL----HGNPWLCNCEIL-YFRRWLQ 221 (290)
T ss_dssp T-TTTCTTCCEEECCSS-CCCCCCTTTTTTCCCSEEEC----CSCCBCCSGGGH-HHHHHHH
T ss_pred H-hcCcCCCCEEECCCC-cCCccChhhcccccCCeEEe----CCCCccCcCccH-HHHHHHH
Confidence 3 245889999999988 58889887665554 4555 455677777643 2334443
No 18
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.30 E-value=2.9e-11 Score=101.65 Aligned_cols=163 Identities=23% Similarity=0.215 Sum_probs=124.1
Q ss_pred ceechHHHhhCCCCcEEEEecccceEecCCCCccccccCCCCcccEEeccCCcccccccccCCccccCCCCccEEEEecC
Q 038204 7 ACFPLGLLEKFRNLEILYLSRTSYTEILSNEGHSEKHVGKFSQVKHLQPYKLNDLKQLWKQGSKLDFIFTNLEILRVYCC 86 (254)
Q Consensus 7 ~~~P~~~~~~l~~L~~L~l~~c~l~~l~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~l~~~~~~~~~~~~~L~~L~l~~C 86 (254)
..+++..+..+++|++|+++++.++.+.. .+.+++|++|++++. .++.+.. ....+++|++|+++++
T Consensus 44 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--------~~~l~~L~~L~Ls~N-~l~~l~~----~~~~l~~L~~L~l~~N 110 (290)
T 1p9a_G 44 YTFSLATLMPYTRLTQLNLDRAELTKLQV--------DGTLPVLGTLDLSHN-QLQSLPL----LGQTLPALTVLDVSFN 110 (290)
T ss_dssp SEEEGGGGTTCTTCCEEECTTSCCCEEEC--------CSCCTTCCEEECCSS-CCSSCCC----CTTTCTTCCEEECCSS
T ss_pred CccCHHHhhcCCCCCEEECCCCccCcccC--------CCCCCcCCEEECCCC-cCCcCch----hhccCCCCCEEECCCC
Confidence 34555556789999999999998888765 246899999999876 4555422 2466899999999986
Q ss_pred CCcceecCCcccccccccEEEeeccccccccccchhhccccccceeEEecCCCceeEeecCCCCccccccccccceeecc
Q 038204 87 QNLIVLLPSSSVSFRNLTDLQVWGCKELMKLVTSSTAKSLVRLRIMKVCGSRAMTQVVTSEKDGAEDEIVFSNLKALTLL 166 (254)
Q Consensus 87 ~~L~~l~p~~~~~~~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~C~~l~~i~~~~~~~~~~~~~~~~L~~L~l~ 166 (254)
+++.+.+..+..+++|+.|+++++ +++.+++ .....+++|+.|+++++. +..++. .....+++|+.|++.
T Consensus 111 -~l~~l~~~~~~~l~~L~~L~L~~N-~l~~~~~-~~~~~l~~L~~L~L~~N~-l~~l~~------~~~~~l~~L~~L~L~ 180 (290)
T 1p9a_G 111 -RLTSLPLGALRGLGELQELYLKGN-ELKTLPP-GLLTPTPKLEKLSLANNN-LTELPA------GLLNGLENLDTLLLQ 180 (290)
T ss_dssp -CCCCCCSSTTTTCTTCCEEECTTS-CCCCCCT-TTTTTCTTCCEEECTTSC-CSCCCT------TTTTTCTTCCEEECC
T ss_pred -cCcccCHHHHcCCCCCCEEECCCC-CCCccCh-hhcccccCCCEEECCCCc-CCccCH------HHhcCcCCCCEEECC
Confidence 577775566788999999999988 4666643 445788999999999985 555443 123457899999999
Q ss_pred cccccceecCCCccccCCCcCeEEEeCCC
Q 038204 167 DLDSLTSFCSGNYTFKFPSLRDLEVIGCP 195 (254)
Q Consensus 167 ~c~~L~~~~~~~~~~~~~sL~~L~i~~Cp 195 (254)
+. +++.++.+. ...++|+.+++.+.|
T Consensus 181 ~N-~l~~ip~~~--~~~~~L~~l~L~~Np 206 (290)
T 1p9a_G 181 EN-SLYTIPKGF--FGSHLLPFAFLHGNP 206 (290)
T ss_dssp SS-CCCCCCTTT--TTTCCCSEEECCSCC
T ss_pred CC-cCCccChhh--cccccCCeEEeCCCC
Confidence 86 788887754 567889999998655
No 19
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.30 E-value=4.7e-11 Score=102.78 Aligned_cols=191 Identities=18% Similarity=0.127 Sum_probs=90.1
Q ss_pred eechHHHhhCCCCcEEEEecccceEecCCCCccccccCCCCcccEEeccCCcccccccccCCccccCCCCccEEEEecCC
Q 038204 8 CFPLGLLEKFRNLEILYLSRTSYTEILSNEGHSEKHVGKFSQVKHLQPYKLNDLKQLWKQGSKLDFIFTNLEILRVYCCQ 87 (254)
Q Consensus 8 ~~P~~~~~~l~~L~~L~l~~c~l~~l~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~l~~~~~~~~~~~~~L~~L~l~~C~ 87 (254)
.+|...+.++++|++|++++|.++.+.+. .++.+++|++|+++++ .++.+... ....+++|++|+++++
T Consensus 66 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~------~~~~l~~L~~L~Ls~n-~l~~~~~~---~~~~l~~L~~L~L~~n- 134 (353)
T 2z80_A 66 YISNSDLQRCVNLQALVLTSNGINTIEED------SFSSLGSLEHLDLSYN-YLSNLSSS---WFKPLSSLTFLNLLGN- 134 (353)
T ss_dssp EECTTTTTTCTTCCEEECTTSCCCEECTT------TTTTCTTCCEEECCSS-CCSSCCHH---HHTTCTTCSEEECTTC-
T ss_pred ccCHHHhccCCCCCEEECCCCccCccCHh------hcCCCCCCCEEECCCC-cCCcCCHh---HhCCCccCCEEECCCC-
Confidence 34444445667777777776666555431 1334555666665543 22222110 0223455555555544
Q ss_pred CcceecC-CcccccccccEEEeeccccccccccchhhccccccceeEEecCCCceeEeecC-CC--------------C-
Q 038204 88 NLIVLLP-SSSVSFRNLTDLQVWGCKELMKLVTSSTAKSLVRLRIMKVCGSRAMTQVVTSE-KD--------------G- 150 (254)
Q Consensus 88 ~L~~l~p-~~~~~~~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~C~~l~~i~~~~-~~--------------~- 150 (254)
.++.+.+ ..+..+++|++|++++|..++.+++ .....+++|++|+++++. +..+.... .. .
T Consensus 135 ~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~-~~~~~l~~L~~L~l~~n~-l~~~~~~~l~~l~~L~~L~l~~n~l~~ 212 (353)
T 2z80_A 135 PYKTLGETSLFSHLTKLQILRVGNMDTFTKIQR-KDFAGLTFLEELEIDASD-LQSYEPKSLKSIQNVSHLILHMKQHIL 212 (353)
T ss_dssp CCSSSCSSCSCTTCTTCCEEEEEESSSCCEECT-TTTTTCCEEEEEEEEETT-CCEECTTTTTTCSEEEEEEEECSCSTT
T ss_pred CCcccCchhhhccCCCCcEEECCCCccccccCH-HHccCCCCCCEEECCCCC-cCccCHHHHhccccCCeecCCCCcccc
Confidence 2333322 1234455555555555544444322 223344555555555543 22211000 00 0
Q ss_pred --ccccccccccceeecccccccceecCCC------------------------------ccccCCCcCeEEEeCCCCCc
Q 038204 151 --AEDEIVFSNLKALTLLDLDSLTSFCSGN------------------------------YTFKFPSLRDLEVIGCPKMK 198 (254)
Q Consensus 151 --~~~~~~~~~L~~L~l~~c~~L~~~~~~~------------------------------~~~~~~sL~~L~i~~Cp~L~ 198 (254)
......+++|+.|++.++ +++.+.... ....+++|++|+++++ +++
T Consensus 213 ~~~~~~~~~~~L~~L~L~~n-~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N-~l~ 290 (353)
T 2z80_A 213 LLEIFVDVTSSVECLELRDT-DLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRN-QLK 290 (353)
T ss_dssp HHHHHHHHTTTEEEEEEESC-BCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSS-CCC
T ss_pred chhhhhhhcccccEEECCCC-ccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCC-CCC
Confidence 001113566777776654 233221100 1135789999999998 688
Q ss_pred ccCCCC-CCCCC--eEEE
Q 038204 199 IFTTGE-LCTPP--RVNV 213 (254)
Q Consensus 199 ~lp~~~-~~~~~--~~~i 213 (254)
.+|.+. ...+. .+.+
T Consensus 291 ~i~~~~~~~l~~L~~L~L 308 (353)
T 2z80_A 291 SVPDGIFDRLTSLQKIWL 308 (353)
T ss_dssp CCCTTTTTTCTTCCEEEC
T ss_pred ccCHHHHhcCCCCCEEEe
Confidence 888764 33344 5565
No 20
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.29 E-value=6.1e-11 Score=99.00 Aligned_cols=175 Identities=13% Similarity=0.035 Sum_probs=128.5
Q ss_pred CCCCcEEEEecccceEecCCCCccccccCCCCcccEEeccCCcccccccccCCccccCCCCccEEEEecCCCcceecCCc
Q 038204 17 FRNLEILYLSRTSYTEILSNEGHSEKHVGKFSQVKHLQPYKLNDLKQLWKQGSKLDFIFTNLEILRVYCCQNLIVLLPSS 96 (254)
Q Consensus 17 l~~L~~L~l~~c~l~~l~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~l~~~~~~~~~~~~~L~~L~l~~C~~L~~l~p~~ 96 (254)
.++|++|+++++.++.++. ..++.+++|++|++.++ .++.+.. .....+++|++|+++++..+..+.|..
T Consensus 31 ~~~l~~L~l~~n~i~~~~~------~~~~~~~~L~~L~l~~n-~l~~~~~---~~~~~l~~L~~L~l~~n~~l~~~~~~~ 100 (285)
T 1ozn_A 31 PAASQRIFLHGNRISHVPA------ASFRACRNLTILWLHSN-VLARIDA---AAFTGLALLEQLDLSDNAQLRSVDPAT 100 (285)
T ss_dssp CTTCSEEECTTSCCCEECT------TTTTTCTTCCEEECCSS-CCCEECT---TTTTTCTTCCEEECCSCTTCCCCCTTT
T ss_pred CCCceEEEeeCCcCCccCH------HHcccCCCCCEEECCCC-ccceeCH---hhcCCccCCCEEeCCCCCCccccCHHH
Confidence 4799999999998888764 12556899999999886 4555422 224568999999999998788886666
Q ss_pred ccccccccEEEeeccccccccccchhhccccccceeEEecCCCceeEeecCCCCccccccccccceeecccccccceecC
Q 038204 97 SVSFRNLTDLQVWGCKELMKLVTSSTAKSLVRLRIMKVCGSRAMTQVVTSEKDGAEDEIVFSNLKALTLLDLDSLTSFCS 176 (254)
Q Consensus 97 ~~~~~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~C~~l~~i~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~ 176 (254)
+..+++|++|+++++. ++.+++ .....+++|++|+++++. +..++. .....+++|+.|++.++ +++.++.
T Consensus 101 ~~~l~~L~~L~l~~n~-l~~~~~-~~~~~l~~L~~L~l~~n~-l~~~~~------~~~~~l~~L~~L~l~~n-~l~~~~~ 170 (285)
T 1ozn_A 101 FHGLGRLHTLHLDRCG-LQELGP-GLFRGLAALQYLYLQDNA-LQALPD------DTFRDLGNLTHLFLHGN-RISSVPE 170 (285)
T ss_dssp TTTCTTCCEEECTTSC-CCCCCT-TTTTTCTTCCEEECCSSC-CCCCCT------TTTTTCTTCCEEECCSS-CCCEECT
T ss_pred hcCCcCCCEEECCCCc-CCEECH-hHhhCCcCCCEEECCCCc-ccccCH------hHhccCCCccEEECCCC-cccccCH
Confidence 7889999999999985 444433 346789999999999985 433322 12345889999999987 7887776
Q ss_pred CCccccCCCcCeEEEeCCCCCccc-CCCCCCCCC--eEEE
Q 038204 177 GNYTFKFPSLRDLEVIGCPKMKIF-TTGELCTPP--RVNV 213 (254)
Q Consensus 177 ~~~~~~~~sL~~L~i~~Cp~L~~l-p~~~~~~~~--~~~i 213 (254)
.. ...+++|++|+++++. ++.+ |......+. .+.+
T Consensus 171 ~~-~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l 208 (285)
T 1ozn_A 171 RA-FRGLHSLDRLLLHQNR-VAHVHPHAFRDLGRLMTLYL 208 (285)
T ss_dssp TT-TTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEEC
T ss_pred HH-hcCccccCEEECCCCc-ccccCHhHccCcccccEeeC
Confidence 42 3468999999999986 5554 444333344 5555
No 21
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.29 E-value=4.9e-11 Score=107.38 Aligned_cols=181 Identities=15% Similarity=0.081 Sum_probs=109.7
Q ss_pred echHHHhhCCCCcEEEEecccceEecCCCCccccccCCCCcccEEeccCCccccccccc---------C----CccccCC
Q 038204 9 FPLGLLEKFRNLEILYLSRTSYTEILSNEGHSEKHVGKFSQVKHLQPYKLNDLKQLWKQ---------G----SKLDFIF 75 (254)
Q Consensus 9 ~P~~~~~~l~~L~~L~l~~c~l~~l~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~l~~~---------~----~~~~~~~ 75 (254)
+|+..+..+++|++|+|++|.+..+++ ++.+++|++|+++++ .+..+... . ......+
T Consensus 49 ~~~~~~~~l~~L~~L~Ls~N~l~~~~~--------l~~l~~L~~L~Ls~N-~l~~l~~~~~L~~L~L~~N~l~~~~~~~l 119 (487)
T 3oja_A 49 ISAADLAPFTKLELLNLSSNVLYETLD--------LESLSTLRTLDLNNN-YVQELLVGPSIETLHAANNNISRVSCSRG 119 (487)
T ss_dssp CCGGGGTTCTTCCEEECTTSCCEEEEE--------CTTCTTCCEEECCSS-EEEEEEECTTCCEEECCSSCCCCEEECCC
T ss_pred CCHHHHhCCCCCCEEEeeCCCCCCCcc--------cccCCCCCEEEecCC-cCCCCCCCCCcCEEECcCCcCCCCCcccc
Confidence 444444567777777777776655443 344666666666654 23222110 0 0001235
Q ss_pred CCccEEEEecCCCcceecCCcccccccccEEEeeccccccccccchhhccccccceeEEecCCCceeEeecCCCCccccc
Q 038204 76 TNLEILRVYCCQNLIVLLPSSSVSFRNLTDLQVWGCKELMKLVTSSTAKSLVRLRIMKVCGSRAMTQVVTSEKDGAEDEI 155 (254)
Q Consensus 76 ~~L~~L~l~~C~~L~~l~p~~~~~~~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~C~~l~~i~~~~~~~~~~~~ 155 (254)
++|++|++++| .+..+.|..+..+++|+.|+++++ .++...+......+++|+.|++++|. +..++. ..
T Consensus 120 ~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~l~~~l~~L~~L~Ls~N~-l~~~~~--------~~ 188 (487)
T 3oja_A 120 QGKKNIYLANN-KITMLRDLDEGCRSRVQYLDLKLN-EIDTVNFAELAASSDTLEHLNLQYNF-IYDVKG--------QV 188 (487)
T ss_dssp SSCEEEECCSS-CCCSGGGBCGGGGSSEEEEECTTS-CCCEEEGGGGGGGTTTCCEEECTTSC-CCEEEC--------CC
T ss_pred CCCCEEECCCC-CCCCCCchhhcCCCCCCEEECCCC-CCCCcChHHHhhhCCcccEEecCCCc-cccccc--------cc
Confidence 56666666665 344443444566778888888776 34444443444567888888888875 544432 22
Q ss_pred cccccceeecccccccceecCCCccccCCCcCeEEEeCCCCCcccCCCCCCCCC--eEEE
Q 038204 156 VFSNLKALTLLDLDSLTSFCSGNYTFKFPSLRDLEVIGCPKMKIFTTGELCTPP--RVNV 213 (254)
Q Consensus 156 ~~~~L~~L~l~~c~~L~~~~~~~~~~~~~sL~~L~i~~Cp~L~~lp~~~~~~~~--~~~i 213 (254)
.+++|+.|++.++ +++.++.. ...+++|+.|+++++ +++.+|......+. .+.+
T Consensus 189 ~l~~L~~L~Ls~N-~l~~~~~~--~~~l~~L~~L~Ls~N-~l~~lp~~l~~l~~L~~L~l 244 (487)
T 3oja_A 189 VFAKLKTLDLSSN-KLAFMGPE--FQSAAGVTWISLRNN-KLVLIEKALRFSQNLEHFDL 244 (487)
T ss_dssp CCTTCCEEECCSS-CCCEECGG--GGGGTTCSEEECTTS-CCCEECTTCCCCTTCCEEEC
T ss_pred cCCCCCEEECCCC-CCCCCCHh--HcCCCCccEEEecCC-cCcccchhhccCCCCCEEEc
Confidence 4788999999886 67777654 357789999999987 47778876544444 4555
No 22
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.29 E-value=7.3e-11 Score=105.52 Aligned_cols=176 Identities=16% Similarity=0.145 Sum_probs=77.3
Q ss_pred echHHHhhCCCCcEEEEecccceEecCCCCccccccCCCCcccEEeccCCcccccccccCCccccCCCCccEEEEecCCC
Q 038204 9 FPLGLLEKFRNLEILYLSRTSYTEILSNEGHSEKHVGKFSQVKHLQPYKLNDLKQLWKQGSKLDFIFTNLEILRVYCCQN 88 (254)
Q Consensus 9 ~P~~~~~~l~~L~~L~l~~c~l~~l~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~l~~~~~~~~~~~~~L~~L~l~~C~~ 88 (254)
++...+.++++|++|+|++|.+..+.+ ..++.+++|++|+|.++ .++.+... ....+++|++|+++++.
T Consensus 47 ~~~~~~~~l~~L~~L~L~~n~i~~~~~------~~~~~l~~L~~L~L~~n-~l~~~~~~---~~~~l~~L~~L~Ls~n~- 115 (477)
T 2id5_A 47 LNQDEFASFPHLEELELNENIVSAVEP------GAFNNLFNLRTLGLRSN-RLKLIPLG---VFTGLSNLTKLDISENK- 115 (477)
T ss_dssp ECTTTTTTCTTCCEEECTTSCCCEECT------TTTTTCTTCCEEECCSS-CCCSCCTT---SSTTCTTCCEEECTTSC-
T ss_pred ECHhHccCCCCCCEEECCCCccCEeCh------hhhhCCccCCEEECCCC-cCCccCcc---cccCCCCCCEEECCCCc-
Confidence 333334566666666666665555532 12334566666666553 23333211 12234555555555542
Q ss_pred cceecCCcccccccccEEEeeccccccccccchhhccccccceeEEecCCCceeEeec--------------C----CCC
Q 038204 89 LIVLLPSSSVSFRNLTDLQVWGCKELMKLVTSSTAKSLVRLRIMKVCGSRAMTQVVTS--------------E----KDG 150 (254)
Q Consensus 89 L~~l~p~~~~~~~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~C~~l~~i~~~--------------~----~~~ 150 (254)
+..+.+..+..+++|++|+++++. ++.+.+ .....+++|+.|++++|. +..++.. . ...
T Consensus 116 i~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~-~~~~~l~~L~~L~l~~n~-l~~~~~~~l~~l~~L~~L~l~~n~i~~~~ 192 (477)
T 2id5_A 116 IVILLDYMFQDLYNLKSLEVGDND-LVYISH-RAFSGLNSLEQLTLEKCN-LTSIPTEALSHLHGLIVLRLRHLNINAIR 192 (477)
T ss_dssp CCEECTTTTTTCTTCCEEEECCTT-CCEECT-TSSTTCTTCCEEEEESCC-CSSCCHHHHTTCTTCCEEEEESCCCCEEC
T ss_pred cccCChhHccccccCCEEECCCCc-cceeCh-hhccCCCCCCEEECCCCc-CcccChhHhcccCCCcEEeCCCCcCcEeC
Confidence 333323333444455555554432 222211 122334444444444442 1111100 0 000
Q ss_pred ccccccccccceeecccccccceecCCCccccCCCcCeEEEeCCCCCcccC
Q 038204 151 AEDEIVFSNLKALTLLDLDSLTSFCSGNYTFKFPSLRDLEVIGCPKMKIFT 201 (254)
Q Consensus 151 ~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~~sL~~L~i~~Cp~L~~lp 201 (254)
......+++|+.|++.+++.+..++... ...++|++|++++| +++.+|
T Consensus 193 ~~~~~~l~~L~~L~l~~~~~~~~~~~~~--~~~~~L~~L~l~~n-~l~~~~ 240 (477)
T 2id5_A 193 DYSFKRLYRLKVLEISHWPYLDTMTPNC--LYGLNLTSLSITHC-NLTAVP 240 (477)
T ss_dssp TTCSCSCTTCCEEEEECCTTCCEECTTT--TTTCCCSEEEEESS-CCCSCC
T ss_pred hhhcccCcccceeeCCCCccccccCccc--ccCccccEEECcCC-cccccC
Confidence 0122335566666666665555555432 33346666666666 355554
No 23
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.29 E-value=7e-11 Score=98.16 Aligned_cols=159 Identities=19% Similarity=0.131 Sum_probs=119.3
Q ss_pred HhhCCCCcEEEEecccceEecCCCCccccccCCCCcccEEeccCCcccccccccCCccccCCCCccEEEEecCCCcceec
Q 038204 14 LEKFRNLEILYLSRTSYTEILSNEGHSEKHVGKFSQVKHLQPYKLNDLKQLWKQGSKLDFIFTNLEILRVYCCQNLIVLL 93 (254)
Q Consensus 14 ~~~l~~L~~L~l~~c~l~~l~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~l~~~~~~~~~~~~~L~~L~l~~C~~L~~l~ 93 (254)
+..+++|++|++++|.++.+. .++.+++|++|++.++ .++.+... ....+++|++|++++| +++.+.
T Consensus 59 l~~l~~L~~L~l~~n~l~~~~--------~l~~l~~L~~L~L~~n-~l~~~~~~---~~~~l~~L~~L~L~~n-~l~~~~ 125 (272)
T 3rfs_A 59 IQYLPNVRYLALGGNKLHDIS--------ALKELTNLTYLILTGN-QLQSLPNG---VFDKLTNLKELVLVEN-QLQSLP 125 (272)
T ss_dssp GGGCTTCCEEECTTSCCCCCG--------GGTTCTTCCEEECTTS-CCCCCCTT---TTTTCTTCCEEECTTS-CCCCCC
T ss_pred cccCCCCcEEECCCCCCCCch--------hhcCCCCCCEEECCCC-ccCccChh---HhcCCcCCCEEECCCC-cCCccC
Confidence 467999999999999776543 2567999999999887 45554221 2356899999999997 466665
Q ss_pred CCcccccccccEEEeeccccccccccchhhccccccceeEEecCCCceeEeecCCCCccccccccccceeecccccccce
Q 038204 94 PSSSVSFRNLTDLQVWGCKELMKLVTSSTAKSLVRLRIMKVCGSRAMTQVVTSEKDGAEDEIVFSNLKALTLLDLDSLTS 173 (254)
Q Consensus 94 p~~~~~~~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~C~~l~~i~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~ 173 (254)
+..+..+++|++|++++| +++.+++ .....+++|+.|++++|. +..++. .....+++|+.|++.++ +++.
T Consensus 126 ~~~~~~l~~L~~L~L~~n-~l~~~~~-~~~~~l~~L~~L~l~~n~-l~~~~~------~~~~~l~~L~~L~L~~N-~l~~ 195 (272)
T 3rfs_A 126 DGVFDKLTNLTYLNLAHN-QLQSLPK-GVFDKLTNLTELDLSYNQ-LQSLPE------GVFDKLTQLKDLRLYQN-QLKS 195 (272)
T ss_dssp TTTTTTCTTCCEEECCSS-CCCCCCT-TTTTTCTTCCEEECCSSC-CCCCCT------TTTTTCTTCCEEECCSS-CCSC
T ss_pred HHHhccCCCCCEEECCCC-ccCccCH-HHhccCccCCEEECCCCC-cCccCH------HHhcCCccCCEEECCCC-cCCc
Confidence 554678999999999998 5666643 345789999999999995 544332 12345799999999987 6776
Q ss_pred ecCCCccccCCCcCeEEEeCCCC
Q 038204 174 FCSGNYTFKFPSLRDLEVIGCPK 196 (254)
Q Consensus 174 ~~~~~~~~~~~sL~~L~i~~Cp~ 196 (254)
++... ...+++|+.|++.+++-
T Consensus 196 ~~~~~-~~~l~~L~~L~l~~N~~ 217 (272)
T 3rfs_A 196 VPDGV-FDRLTSLQYIWLHDNPW 217 (272)
T ss_dssp CCTTT-TTTCTTCCEEECCSSCB
T ss_pred cCHHH-HhCCcCCCEEEccCCCc
Confidence 66532 34689999999998753
No 24
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.26 E-value=1.1e-10 Score=104.32 Aligned_cols=173 Identities=18% Similarity=0.166 Sum_probs=101.3
Q ss_pred echHHHhhCCCCcEEEEecccceEecCCCCccccccCCCCcccEEeccCCcccccccccCCccccCCCCccEEEEecCCC
Q 038204 9 FPLGLLEKFRNLEILYLSRTSYTEILSNEGHSEKHVGKFSQVKHLQPYKLNDLKQLWKQGSKLDFIFTNLEILRVYCCQN 88 (254)
Q Consensus 9 ~P~~~~~~l~~L~~L~l~~c~l~~l~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~l~~~~~~~~~~~~~L~~L~l~~C~~ 88 (254)
+++..+.++++|++|+|++|.++.++.. ..+.+++|++|+|+++. +..+.. .....+++|++|++.++ .
T Consensus 71 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~------~~~~l~~L~~L~Ls~n~-i~~~~~---~~~~~l~~L~~L~l~~n-~ 139 (477)
T 2id5_A 71 VEPGAFNNLFNLRTLGLRSNRLKLIPLG------VFTGLSNLTKLDISENK-IVILLD---YMFQDLYNLKSLEVGDN-D 139 (477)
T ss_dssp ECTTTTTTCTTCCEEECCSSCCCSCCTT------SSTTCTTCCEEECTTSC-CCEECT---TTTTTCTTCCEEEECCT-T
T ss_pred eChhhhhCCccCCEEECCCCcCCccCcc------cccCCCCCCEEECCCCc-cccCCh---hHccccccCCEEECCCC-c
Confidence 4344456889999999998877766541 23457778888876653 333211 11344666666666664 3
Q ss_pred cceecCCcccccccccEEEeecccccccccc-----------------------chhhccccccceeEEecCCCceeEee
Q 038204 89 LIVLLPSSSVSFRNLTDLQVWGCKELMKLVT-----------------------SSTAKSLVRLRIMKVCGSRAMTQVVT 145 (254)
Q Consensus 89 L~~l~p~~~~~~~~L~~L~i~~C~~L~~l~~-----------------------~~~~~~l~~L~~L~i~~C~~l~~i~~ 145 (254)
+..+.+..+..+++|+.|++++| +++.++. ......+++|+.|++++|..+..++.
T Consensus 140 l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~ 218 (477)
T 2id5_A 140 LVYISHRAFSGLNSLEQLTLEKC-NLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTP 218 (477)
T ss_dssp CCEECTTSSTTCTTCCEEEEESC-CCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECT
T ss_pred cceeChhhccCCCCCCEEECCCC-cCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCc
Confidence 44443444555666666666655 2333321 11233445555555555554444332
Q ss_pred cCCCCccccccccccceeecccccccceecCCCccccCCCcCeEEEeCCCCCcccCCC
Q 038204 146 SEKDGAEDEIVFSNLKALTLLDLDSLTSFCSGNYTFKFPSLRDLEVIGCPKMKIFTTG 203 (254)
Q Consensus 146 ~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~~sL~~L~i~~Cp~L~~lp~~ 203 (254)
......+|+.|++.++ +++.++.. ....+++|+.|++++++ ++.++..
T Consensus 219 -------~~~~~~~L~~L~l~~n-~l~~~~~~-~~~~l~~L~~L~Ls~n~-l~~~~~~ 266 (477)
T 2id5_A 219 -------NCLYGLNLTSLSITHC-NLTAVPYL-AVRHLVYLRFLNLSYNP-ISTIEGS 266 (477)
T ss_dssp -------TTTTTCCCSEEEEESS-CCCSCCHH-HHTTCTTCCEEECCSSC-CCEECTT
T ss_pred -------ccccCccccEEECcCC-cccccCHH-HhcCccccCeeECCCCc-CCccChh
Confidence 2223458999999987 67766532 13467999999999885 5555543
No 25
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.26 E-value=5.5e-13 Score=113.82 Aligned_cols=120 Identities=13% Similarity=0.078 Sum_probs=86.4
Q ss_pred hHHHhhC--CCCcEEEEecccceEecCCCCccccccCCCCcccEEeccCCcccccccccCCccccCCCCccEEEEecCCC
Q 038204 11 LGLLEKF--RNLEILYLSRTSYTEILSNEGHSEKHVGKFSQVKHLQPYKLNDLKQLWKQGSKLDFIFTNLEILRVYCCQN 88 (254)
Q Consensus 11 ~~~~~~l--~~L~~L~l~~c~l~~l~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~l~~~~~~~~~~~~~L~~L~l~~C~~ 88 (254)
+..+..+ ++++.|+++++.+...+. ....+++|++|+++++. +.... .......+++|++|++++|.
T Consensus 61 ~~~~~~~~~~~l~~L~l~~n~l~~~~~-------~~~~~~~L~~L~L~~~~-l~~~~--~~~~~~~~~~L~~L~L~~~~- 129 (336)
T 2ast_B 61 PDVTGRLLSQGVIAFRCPRSFMDQPLA-------EHFSPFRVQHMDLSNSV-IEVST--LHGILSQCSKLQNLSLEGLR- 129 (336)
T ss_dssp HHHHHHHHHTTCSEEECTTCEECSCCC-------SCCCCBCCCEEECTTCE-ECHHH--HHHHHTTBCCCSEEECTTCB-
T ss_pred HHHHHhhhhccceEEEcCCccccccch-------hhccCCCCCEEEccCCC-cCHHH--HHHHHhhCCCCCEEeCcCcc-
Confidence 3445556 899999999886655443 14468999999999885 43210 11124668999999999995
Q ss_pred cceecCCcccccccccEEEeeccccccccccchhhccccccceeEEecCCCce
Q 038204 89 LIVLLPSSSVSFRNLTDLQVWGCKELMKLVTSSTAKSLVRLRIMKVCGSRAMT 141 (254)
Q Consensus 89 L~~l~p~~~~~~~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~C~~l~ 141 (254)
+.+..+..+..+++|++|++++|..++..........+++|++|++++|..+.
T Consensus 130 l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~ 182 (336)
T 2ast_B 130 LSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFT 182 (336)
T ss_dssp CCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCC
T ss_pred cCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcC
Confidence 54333444667999999999999878753334557789999999999995553
No 26
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.26 E-value=2.1e-10 Score=100.00 Aligned_cols=94 Identities=20% Similarity=0.131 Sum_probs=51.0
Q ss_pred ceechHHHhhCCCCcEEEEecccceEecCCCCccccccCCCCcccEEeccCCcccccccccCCccccCCCCccEEEEecC
Q 038204 7 ACFPLGLLEKFRNLEILYLSRTSYTEILSNEGHSEKHVGKFSQVKHLQPYKLNDLKQLWKQGSKLDFIFTNLEILRVYCC 86 (254)
Q Consensus 7 ~~~P~~~~~~l~~L~~L~l~~c~l~~l~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~l~~~~~~~~~~~~~L~~L~l~~C 86 (254)
..+|..++..+++|++|++++|.++.++.. .++.+++|++|++.++. ++.+... ....+++|++|+++++
T Consensus 58 ~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~------~~~~l~~L~~L~L~~n~-l~~~~~~---~~~~l~~L~~L~L~~n 127 (390)
T 3o6n_A 58 RKLPAALLDSFRQVELLNLNDLQIEEIDTY------AFAYAHTIQKLYMGFNA-IRYLPPH---VFQNVPLLTVLVLERN 127 (390)
T ss_dssp SEECTHHHHHCCCCSEEECTTSCCCEECTT------TTTTCTTCCEEECCSSC-CCCCCTT---TTTTCTTCCEEECCSS
T ss_pred hhCChhHhcccccCcEEECCCCcccccChh------hccCCCCcCEEECCCCC-CCcCCHH---HhcCCCCCCEEECCCC
Confidence 347887788899999999998877776541 23446666666665542 3332111 1233455555555554
Q ss_pred CCcceecCCcccccccccEEEeecc
Q 038204 87 QNLIVLLPSSSVSFRNLTDLQVWGC 111 (254)
Q Consensus 87 ~~L~~l~p~~~~~~~~L~~L~i~~C 111 (254)
+++.+.+..+..+++|++|+++++
T Consensus 128 -~l~~l~~~~~~~l~~L~~L~L~~n 151 (390)
T 3o6n_A 128 -DLSSLPRGIFHNTPKLTTLSMSNN 151 (390)
T ss_dssp -CCCCCCTTTTTTCTTCCEEECCSS
T ss_pred -ccCcCCHHHhcCCCCCcEEECCCC
Confidence 333332221234445555555444
No 27
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.25 E-value=1e-10 Score=101.88 Aligned_cols=93 Identities=14% Similarity=0.054 Sum_probs=46.1
Q ss_pred eechHHHhhCCCCcEEEEecccceEecCCCCccccccCCCCcccEEeccCCcccccccccCCccccCCCCccEEEEecCC
Q 038204 8 CFPLGLLEKFRNLEILYLSRTSYTEILSNEGHSEKHVGKFSQVKHLQPYKLNDLKQLWKQGSKLDFIFTNLEILRVYCCQ 87 (254)
Q Consensus 8 ~~P~~~~~~l~~L~~L~l~~c~l~~l~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~l~~~~~~~~~~~~~L~~L~l~~C~ 87 (254)
.+|...+..+++|++|++++|.+..+++. .++.+++|++|++.++ .++.+... ....+++|++|+++++
T Consensus 83 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~------~~~~l~~L~~L~L~~n-~l~~l~~~---~~~~l~~L~~L~L~~n- 151 (390)
T 3o6n_A 83 EIDTYAFAYAHTIQKLYMGFNAIRYLPPH------VFQNVPLLTVLVLERN-DLSSLPRG---IFHNTPKLTTLSMSNN- 151 (390)
T ss_dssp EECTTTTTTCTTCCEEECCSSCCCCCCTT------TTTTCTTCCEEECCSS-CCCCCCTT---TTTTCTTCCEEECCSS-
T ss_pred ccChhhccCCCCcCEEECCCCCCCcCCHH------HhcCCCCCCEEECCCC-ccCcCCHH---HhcCCCCCcEEECCCC-
Confidence 44554456778888888887766655431 1344566666666554 23333211 0133455555555554
Q ss_pred CcceecCCcccccccccEEEeecc
Q 038204 88 NLIVLLPSSSVSFRNLTDLQVWGC 111 (254)
Q Consensus 88 ~L~~l~p~~~~~~~~L~~L~i~~C 111 (254)
.++.+.+..+..+++|+.|+++++
T Consensus 152 ~l~~~~~~~~~~l~~L~~L~l~~n 175 (390)
T 3o6n_A 152 NLERIEDDTFQATTSLQNLQLSSN 175 (390)
T ss_dssp CCCBCCTTTTSSCTTCCEEECCSS
T ss_pred ccCccChhhccCCCCCCEEECCCC
Confidence 233332332334444444444443
No 28
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.25 E-value=8.7e-11 Score=107.99 Aligned_cols=188 Identities=13% Similarity=0.039 Sum_probs=124.1
Q ss_pred HhhCCCCcEEEEecccceEecCCCCccccccCCCCcccEEeccCCcccccccccCCccccCCCCccEEEEecCCCcceec
Q 038204 14 LEKFRNLEILYLSRTSYTEILSNEGHSEKHVGKFSQVKHLQPYKLNDLKQLWKQGSKLDFIFTNLEILRVYCCQNLIVLL 93 (254)
Q Consensus 14 ~~~l~~L~~L~l~~c~l~~l~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~l~~~~~~~~~~~~~L~~L~l~~C~~L~~l~ 93 (254)
+..+++|++|++++|.+..++. .++.+++|++|++.++. +..+.. ......+++|++|++++|. +....
T Consensus 372 ~~~~~~L~~L~L~~n~l~~~~~-------~~~~l~~L~~L~l~~n~-l~~~~~--~~~~~~l~~L~~L~l~~n~-l~~~~ 440 (606)
T 3vq2_A 372 DLGTNSLRHLDLSFNGAIIMSA-------NFMGLEELQHLDFQHST-LKRVTE--FSAFLSLEKLLYLDISYTN-TKIDF 440 (606)
T ss_dssp HHCCSCCCEEECCSCSEEEECC-------CCTTCTTCCEEECTTSE-EESTTT--TTTTTTCTTCCEEECTTSC-CEECC
T ss_pred hccCCcccEeECCCCccccchh-------hccCCCCCCeeECCCCc-cCCccC--hhhhhccccCCEEECcCCC-CCccc
Confidence 4567777777777776665543 24567888888887764 332211 1224568899999999886 44444
Q ss_pred CCcccccccccEEEeeccccccccccchhhccccccceeEEecCCCceeEeecCCCCccccccccccceeecccccccce
Q 038204 94 PSSSVSFRNLTDLQVWGCKELMKLVTSSTAKSLVRLRIMKVCGSRAMTQVVTSEKDGAEDEIVFSNLKALTLLDLDSLTS 173 (254)
Q Consensus 94 p~~~~~~~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~C~~l~~i~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~ 173 (254)
|..+..+++|++|++++|.--.... ......+++|+.|++++|. +..++. .....+++|+.|++.++ +++.
T Consensus 441 ~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~~l~~L~~L~Ls~n~-l~~~~~------~~~~~l~~L~~L~Ls~N-~l~~ 511 (606)
T 3vq2_A 441 DGIFLGLTSLNTLKMAGNSFKDNTL-SNVFANTTNLTFLDLSKCQ-LEQISW------GVFDTLHRLQLLNMSHN-NLLF 511 (606)
T ss_dssp TTTTTTCTTCCEEECTTCEEGGGEE-CSCCTTCTTCCEEECTTSC-CCEECT------TTTTTCTTCCEEECCSS-CCSC
T ss_pred hhhhcCCCCCCEEECCCCcCCCcch-HHhhccCCCCCEEECCCCc-CCccCh------hhhcccccCCEEECCCC-cCCC
Confidence 6667788999999999885332222 2346788999999999985 544432 13446889999999988 5665
Q ss_pred ecCCCccccCCCcCeEEEeCCCCCcccCCCCCCCCC---eEEEeeCCCCCccccccc
Q 038204 174 FCSGNYTFKFPSLRDLEVIGCPKMKIFTTGELCTPP---RVNVWYGEGDGECRWAND 227 (254)
Q Consensus 174 ~~~~~~~~~~~sL~~L~i~~Cp~L~~lp~~~~~~~~---~~~i~~~~~~~~~~~~~d 227 (254)
+... ....+++|++|++++|. ++.+|......+. .+.+ .+..|.++++
T Consensus 512 ~~~~-~~~~l~~L~~L~l~~N~-l~~~p~~~~~l~~~L~~l~l----~~N~~~c~c~ 562 (606)
T 3vq2_A 512 LDSS-HYNQLYSLSTLDCSFNR-IETSKGILQHFPKSLAFFNL----TNNSVACICE 562 (606)
T ss_dssp EEGG-GTTTCTTCCEEECTTSC-CCCEESCGGGSCTTCCEEEC----CSCCCCCSST
T ss_pred cCHH-HccCCCcCCEEECCCCc-CcccCHhHhhhcccCcEEEc----cCCCcccCCc
Confidence 5332 23467899999999995 8888887544442 5555 3345555554
No 29
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.25 E-value=2.4e-10 Score=97.31 Aligned_cols=44 Identities=18% Similarity=0.218 Sum_probs=25.5
Q ss_pred echHHHhhCCCCcEEEEecccceEecCCCCccccccCCCCcccEEeccCC
Q 038204 9 FPLGLLEKFRNLEILYLSRTSYTEILSNEGHSEKHVGKFSQVKHLQPYKL 58 (254)
Q Consensus 9 ~P~~~~~~l~~L~~L~l~~c~l~~l~~~~~~~~~~~~~~~~L~~L~L~~~ 58 (254)
+|...+..+++|++|++++|.++.+.+ ..++.+++|++|+++++
T Consensus 67 ~~~~~~~~l~~L~~L~L~~n~l~~~~~------~~~~~l~~L~~L~Ls~n 110 (330)
T 1xku_A 67 IKDGDFKNLKNLHTLILINNKISKISP------GAFAPLVKLERLYLSKN 110 (330)
T ss_dssp BCTTTTTTCTTCCEEECCSSCCCCBCT------TTTTTCTTCCEEECCSS
T ss_pred eChhhhccCCCCCEEECCCCcCCeeCH------HHhcCCCCCCEEECCCC
Confidence 444444567777777777776555422 12345667777777654
No 30
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.25 E-value=2.1e-10 Score=96.62 Aligned_cols=204 Identities=16% Similarity=0.113 Sum_probs=115.5
Q ss_pred ceechHHHhhCCCCcEEEEecccceEec---CC------------CCc----cccccCCCCcccEEeccCCccccccccc
Q 038204 7 ACFPLGLLEKFRNLEILYLSRTSYTEIL---SN------------EGH----SEKHVGKFSQVKHLQPYKLNDLKQLWKQ 67 (254)
Q Consensus 7 ~~~P~~~~~~l~~L~~L~l~~c~l~~l~---~~------------~~~----~~~~~~~~~~L~~L~L~~~~~L~~l~~~ 67 (254)
..+|..++.++++|++|++++|.+..+. .. .+. ....+..+++|++|++.++ .++.+..
T Consensus 41 ~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~l~~n-~l~~~~~- 118 (306)
T 2z66_A 41 QSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHS-NLKQMSE- 118 (306)
T ss_dssp CCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTS-EEESSTT-
T ss_pred CccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccccChhhcCCCCCCCEEECCCC-ccccccc-
Confidence 3566666667788888888777554331 00 000 0001234555566655543 2222211
Q ss_pred CCccccCCCCccEEEEecCCCcceecCCcccccccccEEEeeccccccccccchhhccccccceeEEecCCCceeEeecC
Q 038204 68 GSKLDFIFTNLEILRVYCCQNLIVLLPSSSVSFRNLTDLQVWGCKELMKLVTSSTAKSLVRLRIMKVCGSRAMTQVVTSE 147 (254)
Q Consensus 68 ~~~~~~~~~~L~~L~l~~C~~L~~l~p~~~~~~~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~C~~l~~i~~~~ 147 (254)
......+++|++|+++++. +....+..+..+++|++|+++++.--.... ......+++|+.|++++|. +..+..
T Consensus 119 -~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~~l~~L~~L~Ls~n~-l~~~~~-- 192 (306)
T 2z66_A 119 -FSVFLSLRNLIYLDISHTH-TRVAFNGIFNGLSSLEVLKMAGNSFQENFL-PDIFTELRNLTFLDLSQCQ-LEQLSP-- 192 (306)
T ss_dssp -TTTTTTCTTCCEEECTTSC-CEECSTTTTTTCTTCCEEECTTCEEGGGEE-CSCCTTCTTCCEEECTTSC-CCEECT--
T ss_pred -chhhhhccCCCEEECCCCc-CCccchhhcccCcCCCEEECCCCccccccc-hhHHhhCcCCCEEECCCCC-cCCcCH--
Confidence 1123456777777777763 444434445667888888887774322111 2345677888888888874 444422
Q ss_pred CCCccccccccccceeecccccccceecCCCccccCCCcCeEEEeCCCCCcccCCCCCCCC-C--eEEEeeCCCCCcccc
Q 038204 148 KDGAEDEIVFSNLKALTLLDLDSLTSFCSGNYTFKFPSLRDLEVIGCPKMKIFTTGELCTP-P--RVNVWYGEGDGECRW 224 (254)
Q Consensus 148 ~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~~sL~~L~i~~Cp~L~~lp~~~~~~~-~--~~~i~~~~~~~~~~~ 224 (254)
.....+++|+.|++.++ +++.++... ...+++|++|+++++.--...|......| . .+.+ .+..+.+
T Consensus 193 ----~~~~~l~~L~~L~L~~N-~l~~~~~~~-~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L----~~N~~~~ 262 (306)
T 2z66_A 193 ----TAFNSLSSLQVLNMSHN-NFFSLDTFP-YKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNL----TQNDFAC 262 (306)
T ss_dssp ----TTTTTCTTCCEEECTTS-CCSBCCSGG-GTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEEC----TTCCEEC
T ss_pred ----HHhcCCCCCCEEECCCC-ccCccChhh-ccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEc----cCCCeec
Confidence 13345789999999887 566654422 24678999999999954443444333333 3 5555 3445555
Q ss_pred cccH
Q 038204 225 ANDL 228 (254)
Q Consensus 225 ~~d~ 228 (254)
++++
T Consensus 263 ~c~~ 266 (306)
T 2z66_A 263 TCEH 266 (306)
T ss_dssp SGGG
T ss_pred ccCh
Confidence 5554
No 31
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.24 E-value=6.8e-11 Score=101.85 Aligned_cols=92 Identities=18% Similarity=0.153 Sum_probs=54.9
Q ss_pred eechHHHhhCCCCcEEEEecccceEecCCCCccccccCCCCcccEEeccCCcccccccccCCccccCCCCccEEEEecCC
Q 038204 8 CFPLGLLEKFRNLEILYLSRTSYTEILSNEGHSEKHVGKFSQVKHLQPYKLNDLKQLWKQGSKLDFIFTNLEILRVYCCQ 87 (254)
Q Consensus 8 ~~P~~~~~~l~~L~~L~l~~c~l~~l~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~l~~~~~~~~~~~~~L~~L~l~~C~ 87 (254)
.+|..+ .+++++|+|++++++.++.. ..+.+++|++|+|+++.-++.+..+. ...+++|+++.+.++.
T Consensus 23 ~iP~~l---~~~l~~L~Ls~N~i~~i~~~------~f~~l~~L~~L~Ls~N~i~~~i~~~~---f~~L~~l~~~l~~~~N 90 (350)
T 4ay9_X 23 EIPSDL---PRNAIELRFVLTKLRVIQKG------AFSGFGDLEKIEISQNDVLEVIEADV---FSNLPKLHEIRIEKAN 90 (350)
T ss_dssp SCCTTC---CTTCSEEEEESCCCSEECTT------SSTTCTTCCEEEEECCTTCCEECTTS---BCSCTTCCEEEEEEET
T ss_pred ccCcCc---CCCCCEEEccCCcCCCcCHH------HHcCCCCCCEEECcCCCCCCccChhH---hhcchhhhhhhcccCC
Confidence 355543 25677888888777777641 23457777777777765444432211 2345566666666666
Q ss_pred CcceecCCcccccccccEEEeecc
Q 038204 88 NLIVLLPSSSVSFRNLTDLQVWGC 111 (254)
Q Consensus 88 ~L~~l~p~~~~~~~~L~~L~i~~C 111 (254)
+++.+.|..+..+++|++|+++++
T Consensus 91 ~l~~l~~~~f~~l~~L~~L~l~~n 114 (350)
T 4ay9_X 91 NLLYINPEAFQNLPNLQYLLISNT 114 (350)
T ss_dssp TCCEECTTSBCCCTTCCEEEEEEE
T ss_pred cccccCchhhhhcccccccccccc
Confidence 666665554556666666666654
No 32
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.24 E-value=8e-11 Score=108.23 Aligned_cols=118 Identities=17% Similarity=0.144 Sum_probs=70.4
Q ss_pred echHHHhhCCCCcEEEEecccceEecCCCCccccccCCCCcccEEeccCCcccccccccCCccccCCCCccEEEEecCCC
Q 038204 9 FPLGLLEKFRNLEILYLSRTSYTEILSNEGHSEKHVGKFSQVKHLQPYKLNDLKQLWKQGSKLDFIFTNLEILRVYCCQN 88 (254)
Q Consensus 9 ~P~~~~~~l~~L~~L~l~~c~l~~l~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~l~~~~~~~~~~~~~L~~L~l~~C~~ 88 (254)
+|...+..+++|++|++++|.+++++. .++.+++|++|++.++. ++.+.. .....+++|++|++.+|..
T Consensus 269 ~~~~~~~~l~~L~~L~l~~n~l~~lp~-------~l~~l~~L~~L~l~~n~-l~~~~~---~~~~~l~~L~~L~l~~n~~ 337 (606)
T 3t6q_A 269 ISSNTFHCFSGLQELDLTATHLSELPS-------GLVGLSTLKKLVLSANK-FENLCQ---ISASNFPSLTHLSIKGNTK 337 (606)
T ss_dssp CCTTTTTTCTTCSEEECTTSCCSCCCS-------SCCSCTTCCEEECTTCC-CSBGGG---GCGGGCTTCSEEECCSCSS
T ss_pred cCHHHhccccCCCEEeccCCccCCCCh-------hhcccccCCEEECccCC-cCcCch---hhhhccCcCCEEECCCCCc
Confidence 455555678888888888887766654 24557788888887653 333211 1234567777777777654
Q ss_pred cceecCCcccccccccEEEeeccccccccc-cchhhccccccceeEEecCC
Q 038204 89 LIVLLPSSSVSFRNLTDLQVWGCKELMKLV-TSSTAKSLVRLRIMKVCGSR 138 (254)
Q Consensus 89 L~~l~p~~~~~~~~L~~L~i~~C~~L~~l~-~~~~~~~l~~L~~L~i~~C~ 138 (254)
...+.+..+..+++|++|+++++. ++... .......+++|++|++++|.
T Consensus 338 ~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~~l~~L~~L~l~~n~ 387 (606)
T 3t6q_A 338 RLELGTGCLENLENLRELDLSHDD-IETSDCCNLQLRNLSHLQSLNLSYNE 387 (606)
T ss_dssp CCBCCSSTTTTCTTCCEEECCSSC-CCEEEESTTTTTTCTTCCEEECCSCS
T ss_pred ccccchhhhhccCcCCEEECCCCc-cccccCcchhcccCCCCCEEECCCCc
Confidence 444433335566777777776664 22221 01234566667777776664
No 33
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.23 E-value=6.1e-11 Score=100.44 Aligned_cols=156 Identities=12% Similarity=0.132 Sum_probs=82.4
Q ss_pred HhhCCCCcEEEEecccceEecCCCCccccccCCCCcccEEeccCCcccccccccCCccccCCCCccEEEEecCCCcceec
Q 038204 14 LEKFRNLEILYLSRTSYTEILSNEGHSEKHVGKFSQVKHLQPYKLNDLKQLWKQGSKLDFIFTNLEILRVYCCQNLIVLL 93 (254)
Q Consensus 14 ~~~l~~L~~L~l~~c~l~~l~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~l~~~~~~~~~~~~~L~~L~l~~C~~L~~l~ 93 (254)
+..+++|++|++++|.+..+.. ++.+++|++|+++++. ++.+. ....+++|++|++++|. ++.+
T Consensus 59 ~~~l~~L~~L~L~~n~i~~~~~--------~~~l~~L~~L~L~~n~-l~~~~-----~~~~l~~L~~L~l~~n~-l~~~- 122 (308)
T 1h6u_A 59 VQYLNNLIGLELKDNQITDLAP--------LKNLTKITELELSGNP-LKNVS-----AIAGLQSIKTLDLTSTQ-ITDV- 122 (308)
T ss_dssp GGGCTTCCEEECCSSCCCCCGG--------GTTCCSCCEEECCSCC-CSCCG-----GGTTCTTCCEEECTTSC-CCCC-
T ss_pred hhccCCCCEEEccCCcCCCChh--------HccCCCCCEEEccCCc-CCCch-----hhcCCCCCCEEECCCCC-CCCc-
Confidence 4578888888888887665543 4457777777776653 44331 13446666666666653 4444
Q ss_pred CCcccccccccEEEeeccccccccccchhhccccccceeEEecCCCceeEeecCC------------C--Cccccccccc
Q 038204 94 PSSSVSFRNLTDLQVWGCKELMKLVTSSTAKSLVRLRIMKVCGSRAMTQVVTSEK------------D--GAEDEIVFSN 159 (254)
Q Consensus 94 p~~~~~~~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~C~~l~~i~~~~~------------~--~~~~~~~~~~ 159 (254)
+. +..+++|++|++++| .++.++. ...+++|+.|++++|. +..+..... . .......+++
T Consensus 123 ~~-l~~l~~L~~L~l~~n-~l~~~~~---l~~l~~L~~L~l~~n~-l~~~~~l~~l~~L~~L~l~~n~l~~~~~l~~l~~ 196 (308)
T 1h6u_A 123 TP-LAGLSNLQVLYLDLN-QITNISP---LAGLTNLQYLSIGNAQ-VSDLTPLANLSKLTTLKADDNKISDISPLASLPN 196 (308)
T ss_dssp GG-GTTCTTCCEEECCSS-CCCCCGG---GGGCTTCCEEECCSSC-CCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTT
T ss_pred hh-hcCCCCCCEEECCCC-ccCcCcc---ccCCCCccEEEccCCc-CCCChhhcCCCCCCEEECCCCccCcChhhcCCCC
Confidence 22 455566666666555 2333321 3455555555555552 222110000 0 0001234556
Q ss_pred cceeecccccccceecCCCccccCCCcCeEEEeCCC
Q 038204 160 LKALTLLDLDSLTSFCSGNYTFKFPSLRDLEVIGCP 195 (254)
Q Consensus 160 L~~L~l~~c~~L~~~~~~~~~~~~~sL~~L~i~~Cp 195 (254)
|+.|++.++ .++.++. ...+++|+.|++++++
T Consensus 197 L~~L~L~~N-~l~~~~~---l~~l~~L~~L~l~~N~ 228 (308)
T 1h6u_A 197 LIEVHLKNN-QISDVSP---LANTSNLFIVTLTNQT 228 (308)
T ss_dssp CCEEECTTS-CCCBCGG---GTTCTTCCEEEEEEEE
T ss_pred CCEEEccCC-ccCcccc---ccCCCCCCEEEccCCe
Confidence 666666655 4444432 2456667777776664
No 34
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.23 E-value=2.6e-10 Score=105.00 Aligned_cols=94 Identities=20% Similarity=0.131 Sum_probs=54.0
Q ss_pred ceechHHHhhCCCCcEEEEecccceEecCCCCccccccCCCCcccEEeccCCcccccccccCCccccCCCCccEEEEecC
Q 038204 7 ACFPLGLLEKFRNLEILYLSRTSYTEILSNEGHSEKHVGKFSQVKHLQPYKLNDLKQLWKQGSKLDFIFTNLEILRVYCC 86 (254)
Q Consensus 7 ~~~P~~~~~~l~~L~~L~l~~c~l~~l~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~l~~~~~~~~~~~~~L~~L~l~~C 86 (254)
..+|..++..+++|++|++++|.+..+++. .++.+++|++|+|.++. +..+... ....+++|++|++++|
T Consensus 64 ~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~------~~~~l~~L~~L~L~~n~-l~~~~~~---~~~~l~~L~~L~L~~n 133 (597)
T 3oja_B 64 RKLPAALLDSFRQVELLNLNDLQIEEIDTY------AFAYAHTIQKLYMGFNA-IRYLPPH---VFQNVPLLTVLVLERN 133 (597)
T ss_dssp SEECTHHHHHCCCCSEEECTTSCCCEECTT------TTTTCTTCCEEECCSSC-CCCCCTT---TTTTCTTCCEEECCSS
T ss_pred CCcCHHHHccCCCCcEEECCCCCCCCCChH------HhcCCCCCCEEECCCCc-CCCCCHH---HHcCCCCCCEEEeeCC
Confidence 357888888899999999999988777541 23456666666665542 3333211 1234555555555554
Q ss_pred CCcceecCCcccccccccEEEeecc
Q 038204 87 QNLIVLLPSSSVSFRNLTDLQVWGC 111 (254)
Q Consensus 87 ~~L~~l~p~~~~~~~~L~~L~i~~C 111 (254)
.++.+.+..+..+++|++|++++|
T Consensus 134 -~l~~l~~~~~~~l~~L~~L~Ls~N 157 (597)
T 3oja_B 134 -DLSSLPRGIFHNTPKLTTLSMSNN 157 (597)
T ss_dssp -CCCCCCTTTTTTCTTCCEEECCSS
T ss_pred -CCCCCCHHHhccCCCCCEEEeeCC
Confidence 344442222244555555555554
No 35
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.22 E-value=1.7e-10 Score=106.25 Aligned_cols=93 Identities=14% Similarity=0.054 Sum_probs=49.5
Q ss_pred eechHHHhhCCCCcEEEEecccceEecCCCCccccccCCCCcccEEeccCCcccccccccCCccccCCCCccEEEEecCC
Q 038204 8 CFPLGLLEKFRNLEILYLSRTSYTEILSNEGHSEKHVGKFSQVKHLQPYKLNDLKQLWKQGSKLDFIFTNLEILRVYCCQ 87 (254)
Q Consensus 8 ~~P~~~~~~l~~L~~L~l~~c~l~~l~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~l~~~~~~~~~~~~~L~~L~l~~C~ 87 (254)
.+|+..+..+++|++|++++|.+..+++. .++.+++|++|+|.++ .+..+... ....+++|++|++++|
T Consensus 89 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~------~~~~l~~L~~L~L~~n-~l~~l~~~---~~~~l~~L~~L~Ls~N- 157 (597)
T 3oja_B 89 EIDTYAFAYAHTIQKLYMGFNAIRYLPPH------VFQNVPLLTVLVLERN-DLSSLPRG---IFHNTPKLTTLSMSNN- 157 (597)
T ss_dssp EECTTTTTTCTTCCEEECCSSCCCCCCTT------TTTTCTTCCEEECCSS-CCCCCCTT---TTTTCTTCCEEECCSS-
T ss_pred CCChHHhcCCCCCCEEECCCCcCCCCCHH------HHcCCCCCCEEEeeCC-CCCCCCHH---HhccCCCCCEEEeeCC-
Confidence 44544456778888888888766655441 2345666666666654 33333221 1234556666666555
Q ss_pred CcceecCCcccccccccEEEeecc
Q 038204 88 NLIVLLPSSSVSFRNLTDLQVWGC 111 (254)
Q Consensus 88 ~L~~l~p~~~~~~~~L~~L~i~~C 111 (254)
.+..+.|..+..+++|+.|+++++
T Consensus 158 ~l~~~~~~~~~~l~~L~~L~L~~N 181 (597)
T 3oja_B 158 NLERIEDDTFQATTSLQNLQLSSN 181 (597)
T ss_dssp CCCBCCTTTTTTCTTCCEEECTTS
T ss_pred cCCCCChhhhhcCCcCcEEECcCC
Confidence 333343333444555555555444
No 36
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.22 E-value=8.3e-11 Score=99.59 Aligned_cols=103 Identities=13% Similarity=0.115 Sum_probs=82.1
Q ss_pred hhCCCCcEEEEecccceEecCCCCccccccCCCCcccEEeccCCcccccccccCCccccCCCCccEEEEecCCCcceecC
Q 038204 15 EKFRNLEILYLSRTSYTEILSNEGHSEKHVGKFSQVKHLQPYKLNDLKQLWKQGSKLDFIFTNLEILRVYCCQNLIVLLP 94 (254)
Q Consensus 15 ~~l~~L~~L~l~~c~l~~l~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~l~~~~~~~~~~~~~L~~L~l~~C~~L~~l~p 94 (254)
..+++|++|++++|.++.+.. +..+++|++|+++++ .++.+.. ...+++|++|+++++. ++.+ +
T Consensus 38 ~~l~~L~~L~l~~~~i~~l~~--------~~~l~~L~~L~L~~n-~i~~~~~-----~~~l~~L~~L~L~~n~-l~~~-~ 101 (308)
T 1h6u_A 38 ADLDGITTLSAFGTGVTTIEG--------VQYLNNLIGLELKDN-QITDLAP-----LKNLTKITELELSGNP-LKNV-S 101 (308)
T ss_dssp HHHHTCCEEECTTSCCCCCTT--------GGGCTTCCEEECCSS-CCCCCGG-----GTTCCSCCEEECCSCC-CSCC-G
T ss_pred HHcCCcCEEEeeCCCccCchh--------hhccCCCCEEEccCC-cCCCChh-----HccCCCCCEEEccCCc-CCCc-h
Confidence 357899999999997776543 566999999999887 4555422 5678999999999985 7666 4
Q ss_pred CcccccccccEEEeeccccccccccchhhccccccceeEEecCC
Q 038204 95 SSSVSFRNLTDLQVWGCKELMKLVTSSTAKSLVRLRIMKVCGSR 138 (254)
Q Consensus 95 ~~~~~~~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~C~ 138 (254)
. +..+++|++|++++|. ++.++ ....+++|+.|++++|.
T Consensus 102 ~-~~~l~~L~~L~l~~n~-l~~~~---~l~~l~~L~~L~l~~n~ 140 (308)
T 1h6u_A 102 A-IAGLQSIKTLDLTSTQ-ITDVT---PLAGLSNLQVLYLDLNQ 140 (308)
T ss_dssp G-GTTCTTCCEEECTTSC-CCCCG---GGTTCTTCCEEECCSSC
T ss_pred h-hcCCCCCCEEECCCCC-CCCch---hhcCCCCCCEEECCCCc
Confidence 4 7889999999999985 66653 36789999999999885
No 37
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.21 E-value=3.9e-11 Score=103.30 Aligned_cols=174 Identities=18% Similarity=0.114 Sum_probs=91.2
Q ss_pred echHHHhhCCCCcEEEEecccceEecCCCCccccccCCCCcccEEeccCCcccccccccCCccccCCCCccEEEEecCCC
Q 038204 9 FPLGLLEKFRNLEILYLSRTSYTEILSNEGHSEKHVGKFSQVKHLQPYKLNDLKQLWKQGSKLDFIFTNLEILRVYCCQN 88 (254)
Q Consensus 9 ~P~~~~~~l~~L~~L~l~~c~l~~l~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~l~~~~~~~~~~~~~L~~L~l~~C~~ 88 (254)
++...+.++++|++|++++|.++.++. ..++.+++|++|++.++ .++.+.. ......+++|++|+++++..
T Consensus 91 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~------~~~~~l~~L~~L~L~~n-~l~~l~~--~~~~~~l~~L~~L~l~~n~~ 161 (353)
T 2z80_A 91 IEEDSFSSLGSLEHLDLSYNYLSNLSS------SWFKPLSSLTFLNLLGN-PYKTLGE--TSLFSHLTKLQILRVGNMDT 161 (353)
T ss_dssp ECTTTTTTCTTCCEEECCSSCCSSCCH------HHHTTCTTCSEEECTTC-CCSSSCS--SCSCTTCTTCCEEEEEESSS
T ss_pred cCHhhcCCCCCCCEEECCCCcCCcCCH------hHhCCCccCCEEECCCC-CCcccCc--hhhhccCCCCcEEECCCCcc
Confidence 344444567777777777776554432 11334666666666554 2333211 01133455666666666655
Q ss_pred cceecCCcccccccccEEEeecccccccccc-----------------------chhhccccccceeEEecCCCceeEee
Q 038204 89 LIVLLPSSSVSFRNLTDLQVWGCKELMKLVT-----------------------SSTAKSLVRLRIMKVCGSRAMTQVVT 145 (254)
Q Consensus 89 L~~l~p~~~~~~~~L~~L~i~~C~~L~~l~~-----------------------~~~~~~l~~L~~L~i~~C~~l~~i~~ 145 (254)
+..+.+..+..+++|++|+++++. ++...+ ......+++|+.|+++++. +..+..
T Consensus 162 ~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~-l~~~~~ 239 (353)
T 2z80_A 162 FTKIQRKDFAGLTFLEELEIDASD-LQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTD-LDTFHF 239 (353)
T ss_dssp CCEECTTTTTTCCEEEEEEEEETT-CCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCB-CTTCCC
T ss_pred ccccCHHHccCCCCCCEEECCCCC-cCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCc-cccccc
Confidence 555543334445555555555543 222211 1122335556666665553 211100
Q ss_pred cCC-----------------CC--------ccccccccccceeecccccccceecCCCccccCCCcCeEEEeCCC
Q 038204 146 SEK-----------------DG--------AEDEIVFSNLKALTLLDLDSLTSFCSGNYTFKFPSLRDLEVIGCP 195 (254)
Q Consensus 146 ~~~-----------------~~--------~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~~sL~~L~i~~Cp 195 (254)
..- .. ......+++|+.|++.++ +++.++.+. ...+++|++|+++++|
T Consensus 240 ~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N-~l~~i~~~~-~~~l~~L~~L~L~~N~ 312 (353)
T 2z80_A 240 SELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRN-QLKSVPDGI-FDRLTSLQKIWLHTNP 312 (353)
T ss_dssp C------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSS-CCCCCCTTT-TTTCTTCCEEECCSSC
T ss_pred cccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCC-CCCccCHHH-HhcCCCCCEEEeeCCC
Confidence 000 00 001235689999999987 777777642 2468999999999886
No 38
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.21 E-value=4.7e-11 Score=102.29 Aligned_cols=156 Identities=15% Similarity=0.167 Sum_probs=108.6
Q ss_pred HhhCCCCcEEEEecccceEecCCCCccccccCCCCcccEEeccCCcccccccccCCccccCCCCccEEEEecCCCcceec
Q 038204 14 LEKFRNLEILYLSRTSYTEILSNEGHSEKHVGKFSQVKHLQPYKLNDLKQLWKQGSKLDFIFTNLEILRVYCCQNLIVLL 93 (254)
Q Consensus 14 ~~~l~~L~~L~l~~c~l~~l~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~l~~~~~~~~~~~~~L~~L~l~~C~~L~~l~ 93 (254)
+..+++|++|++++|.+..+.. ...+++|+.|.+.++ .+..+.. ...+++|++|++++| +++.+
T Consensus 173 ~~~l~~L~~L~l~~n~l~~~~~--------~~~l~~L~~L~l~~n-~l~~~~~-----~~~~~~L~~L~l~~n-~l~~~- 236 (347)
T 4fmz_A 173 IANLTDLYSLSLNYNQIEDISP--------LASLTSLHYFTAYVN-QITDITP-----VANMTRLNSLKIGNN-KITDL- 236 (347)
T ss_dssp GGGCTTCSEEECTTSCCCCCGG--------GGGCTTCCEEECCSS-CCCCCGG-----GGGCTTCCEEECCSS-CCCCC-
T ss_pred hccCCCCCEEEccCCccccccc--------ccCCCccceeecccC-CCCCCch-----hhcCCcCCEEEccCC-ccCCC-
Confidence 5689999999999997765543 456888999998775 3333211 456788999999887 45555
Q ss_pred CCcccccccccEEEeeccccccccccchhhccccccceeEEecCCCceeEeecCCCCccccccccccceeecccccccce
Q 038204 94 PSSSVSFRNLTDLQVWGCKELMKLVTSSTAKSLVRLRIMKVCGSRAMTQVVTSEKDGAEDEIVFSNLKALTLLDLDSLTS 173 (254)
Q Consensus 94 p~~~~~~~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~C~~l~~i~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~ 173 (254)
+. +..+++|++|++++| .++.+ .....+++|+.|++++|. +..+. ....+++|+.|++.++ .++.
T Consensus 237 ~~-~~~l~~L~~L~l~~n-~l~~~---~~~~~l~~L~~L~l~~n~-l~~~~--------~~~~l~~L~~L~L~~n-~l~~ 301 (347)
T 4fmz_A 237 SP-LANLSQLTWLEIGTN-QISDI---NAVKDLTKLKMLNVGSNQ-ISDIS--------VLNNLSQLNSLFLNNN-QLGN 301 (347)
T ss_dssp GG-GTTCTTCCEEECCSS-CCCCC---GGGTTCTTCCEEECCSSC-CCCCG--------GGGGCTTCSEEECCSS-CCCG
T ss_pred cc-hhcCCCCCEEECCCC-ccCCC---hhHhcCCCcCEEEccCCc-cCCCh--------hhcCCCCCCEEECcCC-cCCC
Confidence 33 677889999999887 45554 346678888999998884 44331 3445788888888887 4443
Q ss_pred ecCCCccccCCCcCeEEEeCCCCCcccCC
Q 038204 174 FCSGNYTFKFPSLRDLEVIGCPKMKIFTT 202 (254)
Q Consensus 174 ~~~~~~~~~~~sL~~L~i~~Cp~L~~lp~ 202 (254)
.... ....+++|++|++++|+ ++.+++
T Consensus 302 ~~~~-~l~~l~~L~~L~L~~n~-l~~~~~ 328 (347)
T 4fmz_A 302 EDME-VIGGLTNLTTLFLSQNH-ITDIRP 328 (347)
T ss_dssp GGHH-HHHTCTTCSEEECCSSS-CCCCGG
T ss_pred cChh-HhhccccCCEEEccCCc-cccccC
Confidence 3321 12467889999998886 554443
No 39
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.20 E-value=1.2e-10 Score=95.55 Aligned_cols=159 Identities=18% Similarity=0.130 Sum_probs=87.8
Q ss_pred CCcEEEEecccceEecCCCCccccccCCCCcccEEeccCCcccccccccCCccccCCCCccEEEEecCCCcceecCCccc
Q 038204 19 NLEILYLSRTSYTEILSNEGHSEKHVGKFSQVKHLQPYKLNDLKQLWKQGSKLDFIFTNLEILRVYCCQNLIVLLPSSSV 98 (254)
Q Consensus 19 ~L~~L~l~~c~l~~l~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~l~~~~~~~~~~~~~L~~L~l~~C~~L~~l~p~~~~ 98 (254)
+.+.++++++.++.++. +..++|++|++.++ .+..+.. .....+++|++|+++++ +++.+.+..+.
T Consensus 15 ~~~~l~~~~~~l~~~p~---------~~~~~l~~L~L~~n-~l~~~~~---~~~~~l~~L~~L~L~~n-~l~~~~~~~~~ 80 (251)
T 3m19_A 15 GKKEVDCQGKSLDSVPS---------GIPADTEKLDLQST-GLATLSD---ATFRGLTKLTWLNLDYN-QLQTLSAGVFD 80 (251)
T ss_dssp GGTEEECTTCCCSSCCS---------CCCTTCCEEECTTS-CCCCCCT---TTTTTCTTCCEEECTTS-CCCCCCTTTTT
T ss_pred CCeEEecCCCCccccCC---------CCCCCCCEEEccCC-CcCccCH---hHhcCcccCCEEECCCC-cCCccCHhHhc
Confidence 45566666665555543 11356777777664 2333321 11345667777777764 45555444455
Q ss_pred ccccccEEEeeccccccccccchhhccccccceeEEecCCCceeEeecCCCCccccccccccceeecccccccceecCCC
Q 038204 99 SFRNLTDLQVWGCKELMKLVTSSTAKSLVRLRIMKVCGSRAMTQVVTSEKDGAEDEIVFSNLKALTLLDLDSLTSFCSGN 178 (254)
Q Consensus 99 ~~~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~C~~l~~i~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~ 178 (254)
.+++|+.|+++++. ++.+++ .....+++|++|+++++. +..++. .....+++|+.|++.++ +++.++.+.
T Consensus 81 ~l~~L~~L~L~~n~-l~~~~~-~~~~~l~~L~~L~L~~N~-l~~~~~------~~~~~l~~L~~L~Ls~N-~l~~~~~~~ 150 (251)
T 3m19_A 81 DLTELGTLGLANNQ-LASLPL-GVFDHLTQLDKLYLGGNQ-LKSLPS------GVFDRLTKLKELRLNTN-QLQSIPAGA 150 (251)
T ss_dssp TCTTCCEEECTTSC-CCCCCT-TTTTTCTTCCEEECCSSC-CCCCCT------TTTTTCTTCCEEECCSS-CCCCCCTTT
T ss_pred cCCcCCEEECCCCc-ccccCh-hHhcccCCCCEEEcCCCc-CCCcCh------hHhccCCcccEEECcCC-cCCccCHHH
Confidence 66777777776653 444432 334566777777777663 433322 11234667777777765 566555432
Q ss_pred ccccCCCcCeEEEeCCCCCcccCCC
Q 038204 179 YTFKFPSLRDLEVIGCPKMKIFTTG 203 (254)
Q Consensus 179 ~~~~~~sL~~L~i~~Cp~L~~lp~~ 203 (254)
...+++|++|+++++ +++.+|..
T Consensus 151 -~~~l~~L~~L~L~~N-~l~~~~~~ 173 (251)
T 3m19_A 151 -FDKLTNLQTLSLSTN-QLQSVPHG 173 (251)
T ss_dssp -TTTCTTCCEEECCSS-CCSCCCTT
T ss_pred -cCcCcCCCEEECCCC-cCCccCHH
Confidence 234567777777766 45555543
No 40
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.20 E-value=6e-11 Score=101.61 Aligned_cols=154 Identities=9% Similarity=0.108 Sum_probs=71.1
Q ss_pred hCCCCcEEEEecccceEecCCCCccccccCCCCcccEEeccCCcccccccccCCccccCCCCccEEEEecCCCcceecCC
Q 038204 16 KFRNLEILYLSRTSYTEILSNEGHSEKHVGKFSQVKHLQPYKLNDLKQLWKQGSKLDFIFTNLEILRVYCCQNLIVLLPS 95 (254)
Q Consensus 16 ~l~~L~~L~l~~c~l~~l~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~l~~~~~~~~~~~~~L~~L~l~~C~~L~~l~p~ 95 (254)
.+++|++|++++|.+..+.. ++.+++|++|++.++ .++.+.. ...+++|++|++++| .++.+ +.
T Consensus 42 ~l~~L~~L~l~~~~i~~~~~--------~~~~~~L~~L~l~~n-~i~~~~~-----~~~l~~L~~L~L~~n-~i~~~-~~ 105 (347)
T 4fmz_A 42 ELESITKLVVAGEKVASIQG--------IEYLTNLEYLNLNGN-QITDISP-----LSNLVKLTNLYIGTN-KITDI-SA 105 (347)
T ss_dssp HHTTCSEEECCSSCCCCCTT--------GGGCTTCCEEECCSS-CCCCCGG-----GTTCTTCCEEECCSS-CCCCC-GG
T ss_pred hcccccEEEEeCCccccchh--------hhhcCCccEEEccCC-ccccchh-----hhcCCcCCEEEccCC-cccCc-hH
Confidence 45566666666664444322 333555555555554 3333211 234455555555554 33333 22
Q ss_pred cccccccccEEEeeccccccccccchhhccccccceeEEecCCCceeEeecCC--------------CCccccccccccc
Q 038204 96 SSVSFRNLTDLQVWGCKELMKLVTSSTAKSLVRLRIMKVCGSRAMTQVVTSEK--------------DGAEDEIVFSNLK 161 (254)
Q Consensus 96 ~~~~~~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~C~~l~~i~~~~~--------------~~~~~~~~~~~L~ 161 (254)
+..+++|++|++++|. ++.++. ...+++|+.|++++|..+..+..... ........+++|+
T Consensus 106 -~~~l~~L~~L~l~~n~-i~~~~~---~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~ 180 (347)
T 4fmz_A 106 -LQNLTNLRELYLNEDN-ISDISP---LANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTPIANLTDLY 180 (347)
T ss_dssp -GTTCTTCSEEECTTSC-CCCCGG---GTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCS
T ss_pred -HcCCCcCCEEECcCCc-ccCchh---hccCCceeEEECCCCCCcccccchhhCCCCcEEEecCCCcCCchhhccCCCCC
Confidence 4444555555554442 222211 33444444444444433221110000 0001134566777
Q ss_pred eeecccccccceecCCCccccCCCcCeEEEeCC
Q 038204 162 ALTLLDLDSLTSFCSGNYTFKFPSLRDLEVIGC 194 (254)
Q Consensus 162 ~L~l~~c~~L~~~~~~~~~~~~~sL~~L~i~~C 194 (254)
.|++.++ .++.++. ...+++|+.+++.++
T Consensus 181 ~L~l~~n-~l~~~~~---~~~l~~L~~L~l~~n 209 (347)
T 4fmz_A 181 SLSLNYN-QIEDISP---LASLTSLHYFTAYVN 209 (347)
T ss_dssp EEECTTS-CCCCCGG---GGGCTTCCEEECCSS
T ss_pred EEEccCC-ccccccc---ccCCCccceeecccC
Confidence 7777766 4444433 245677788777766
No 41
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.19 E-value=1.9e-10 Score=95.48 Aligned_cols=169 Identities=18% Similarity=0.126 Sum_probs=104.9
Q ss_pred eechHHHhhCCCCcEEEEecccceEecCCC--Cc----------------cccccCCCCcccEEeccCCcccccccccCC
Q 038204 8 CFPLGLLEKFRNLEILYLSRTSYTEILSNE--GH----------------SEKHVGKFSQVKHLQPYKLNDLKQLWKQGS 69 (254)
Q Consensus 8 ~~P~~~~~~l~~L~~L~l~~c~l~~l~~~~--~~----------------~~~~~~~~~~L~~L~L~~~~~L~~l~~~~~ 69 (254)
.+|...+.++++|++|++++|.++.+.... +. ....++.+++|++|.+.++ .+..+..
T Consensus 42 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~--- 117 (276)
T 2z62_A 42 HLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVET-NLASLEN--- 117 (276)
T ss_dssp EECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTS-CCCCSTT---
T ss_pred ccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECCCC-CccccCc---
Confidence 344434456777777777777665554310 00 0011334556666666554 2222211
Q ss_pred ccccCCCCccEEEEecCCCcceec-CCcccccccccEEEeeccccccccccchhhccccccc----eeEEecCCCceeEe
Q 038204 70 KLDFIFTNLEILRVYCCQNLIVLL-PSSSVSFRNLTDLQVWGCKELMKLVTSSTAKSLVRLR----IMKVCGSRAMTQVV 144 (254)
Q Consensus 70 ~~~~~~~~L~~L~l~~C~~L~~l~-p~~~~~~~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~----~L~i~~C~~l~~i~ 144 (254)
.....+++|++|+++++. ++.+. |..+..+++|++|+++++. ++.++. .....+++|+ .|+++++. +..+.
T Consensus 118 ~~~~~l~~L~~L~l~~n~-l~~~~l~~~~~~l~~L~~L~Ls~N~-l~~~~~-~~~~~l~~L~~l~l~L~ls~n~-l~~~~ 193 (276)
T 2z62_A 118 FPIGHLKTLKELNVAHNL-IQSFKLPEYFSNLTNLEHLDLSSNK-IQSIYC-TDLRVLHQMPLLNLSLDLSLNP-MNFIQ 193 (276)
T ss_dssp CCCTTCTTCCEEECCSSC-CCCCCCCGGGGGCTTCCEEECCSSC-CCEECG-GGGHHHHTCTTCCEEEECCSSC-CCEEC
T ss_pred hhcccCCCCCEEECcCCc-cceecCchhhccCCCCCEEECCCCC-CCcCCH-HHhhhhhhccccceeeecCCCc-ccccC
Confidence 124568999999999874 44432 5567889999999999984 555543 3345566666 78888875 55544
Q ss_pred ecCCCCccccccccccceeecccccccceecCCCccccCCCcCeEEEeC
Q 038204 145 TSEKDGAEDEIVFSNLKALTLLDLDSLTSFCSGNYTFKFPSLRDLEVIG 193 (254)
Q Consensus 145 ~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~~sL~~L~i~~ 193 (254)
. ......+|+.|++.++ +++.++... ...+++|++|++++
T Consensus 194 ~-------~~~~~~~L~~L~L~~n-~l~~~~~~~-~~~l~~L~~L~l~~ 233 (276)
T 2z62_A 194 P-------GAFKEIRLKELALDTN-QLKSVPDGI-FDRLTSLQKIWLHT 233 (276)
T ss_dssp T-------TSSCSCCEEEEECCSS-CCSCCCTTT-TTTCCSCCEEECCS
T ss_pred c-------cccCCCcccEEECCCC-ceeecCHhH-hcccccccEEEccC
Confidence 3 2223458999999987 588776542 24689999999994
No 42
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.17 E-value=1.7e-10 Score=104.81 Aligned_cols=198 Identities=14% Similarity=0.165 Sum_probs=123.8
Q ss_pred eechHHHhhCCCCcEEEEecccceEecCCCCccccccCCCCcccEEeccCCcccccccccCCccccCCCCccEEEEecCC
Q 038204 8 CFPLGLLEKFRNLEILYLSRTSYTEILSNEGHSEKHVGKFSQVKHLQPYKLNDLKQLWKQGSKLDFIFTNLEILRVYCCQ 87 (254)
Q Consensus 8 ~~P~~~~~~l~~L~~L~l~~c~l~~l~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~l~~~~~~~~~~~~~L~~L~l~~C~ 87 (254)
.+|.++.+.+++|++|++++|.+...... .....+.+++|++|+++++ .++.+... ......+++|++|++++|
T Consensus 324 ~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~---~~~~~~~l~~L~~L~Ls~N-~l~~~~~~-~~~~~~l~~L~~L~Ls~N- 397 (549)
T 2z81_A 324 LVPCSFSQHLKSLEFLDLSENLMVEEYLK---NSACKGAWPSLQTLVLSQN-HLRSMQKT-GEILLTLKNLTSLDISRN- 397 (549)
T ss_dssp CCCHHHHHHCTTCCEEECCSSCCCHHHHH---HHTCTTSSTTCCEEECTTS-CCCCHHHH-HHHGGGCTTCCEEECTTC-
T ss_pred cCCHHHHhcCccccEEEccCCcccccccc---chhhhhccccCcEEEccCC-cccccccc-hhhhhcCCCCCEEECCCC-
Confidence 36777666778888888888755432110 0001345788888888776 34433210 011345788888888887
Q ss_pred CcceecCCcccccccccEEEeeccccccccccchhhccccccceeEEecCCCceeEeecCCCCccccccccccceeeccc
Q 038204 88 NLIVLLPSSSVSFRNLTDLQVWGCKELMKLVTSSTAKSLVRLRIMKVCGSRAMTQVVTSEKDGAEDEIVFSNLKALTLLD 167 (254)
Q Consensus 88 ~L~~l~p~~~~~~~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~C~~l~~i~~~~~~~~~~~~~~~~L~~L~l~~ 167 (254)
+++.+ |..+..+++|++|++++|. ++.++. ...++|++|++++|. +..++ ..+++|+.|++.+
T Consensus 398 ~l~~l-p~~~~~~~~L~~L~Ls~N~-l~~l~~----~~~~~L~~L~Ls~N~-l~~~~----------~~l~~L~~L~Ls~ 460 (549)
T 2z81_A 398 TFHPM-PDSCQWPEKMRFLNLSSTG-IRVVKT----CIPQTLEVLDVSNNN-LDSFS----------LFLPRLQELYISR 460 (549)
T ss_dssp CCCCC-CSCCCCCTTCCEEECTTSC-CSCCCT----TSCTTCSEEECCSSC-CSCCC----------CCCTTCCEEECCS
T ss_pred CCccC-ChhhcccccccEEECCCCC-cccccc----hhcCCceEEECCCCC-hhhhc----------ccCChhcEEECCC
Confidence 56666 5556677888888888875 544432 112577888888874 43322 2588999999998
Q ss_pred ccccceecCCCccccCCCcCeEEEeCCCCCcccCCCCC-CCCC--eEEEeeCCCCCcccccccHHHHHHHHHH
Q 038204 168 LDSLTSFCSGNYTFKFPSLRDLEVIGCPKMKIFTTGEL-CTPP--RVNVWYGEGDGECRWANDLNVTIQELHA 237 (254)
Q Consensus 168 c~~L~~~~~~~~~~~~~sL~~L~i~~Cp~L~~lp~~~~-~~~~--~~~i~~~~~~~~~~~~~d~~~~i~~~~~ 237 (254)
+ +++.++.. ..+++|+.|+++++ +++.++.+.. ..+. .+.+ .+..|.++......++.|..
T Consensus 461 N-~l~~ip~~---~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~l----~~N~~~~~~~~~~~l~~~l~ 524 (549)
T 2z81_A 461 N-KLKTLPDA---SLFPVLLVMKISRN-QLKSVPDGIFDRLTSLQKIWL----HTNPWDCSCPRIDYLSRWLN 524 (549)
T ss_dssp S-CCSSCCCG---GGCTTCCEEECCSS-CCCCCCTTGGGGCTTCCEEEC----CSSCBCCCHHHHHHHHHHHH
T ss_pred C-ccCcCCCc---ccCccCCEEecCCC-ccCCcCHHHHhcCcccCEEEe----cCCCccCCCccHHHHHHHHH
Confidence 8 77777753 46899999999998 5777776532 3333 5566 23345554443344554543
No 43
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.17 E-value=2e-10 Score=96.42 Aligned_cols=146 Identities=16% Similarity=0.193 Sum_probs=76.5
Q ss_pred hCCCCcEEEEecccceEecCCCCccccccCCCCcccEEeccCCcccccccccCCccccCCCCccEEEEecCCCcceecCC
Q 038204 16 KFRNLEILYLSRTSYTEILSNEGHSEKHVGKFSQVKHLQPYKLNDLKQLWKQGSKLDFIFTNLEILRVYCCQNLIVLLPS 95 (254)
Q Consensus 16 ~l~~L~~L~l~~c~l~~l~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~l~~~~~~~~~~~~~L~~L~l~~C~~L~~l~p~ 95 (254)
.+++|++|++++|.++.+.. ++.+++|++|.+.++ .++.+ .....+++|++|++++| ++..+ +.
T Consensus 66 ~l~~L~~L~L~~n~l~~~~~--------l~~l~~L~~L~l~~n-~l~~~-----~~l~~l~~L~~L~L~~n-~i~~~-~~ 129 (291)
T 1h6t_A 66 YLPNVTKLFLNGNKLTDIKP--------LANLKNLGWLFLDEN-KVKDL-----SSLKDLKKLKSLSLEHN-GISDI-NG 129 (291)
T ss_dssp GCTTCCEEECCSSCCCCCGG--------GTTCTTCCEEECCSS-CCCCG-----GGGTTCTTCCEEECTTS-CCCCC-GG
T ss_pred cCCCCCEEEccCCccCCCcc--------cccCCCCCEEECCCC-cCCCC-----hhhccCCCCCEEECCCC-cCCCC-hh
Confidence 44555555555554433321 334555555555543 23322 11344566666666655 34443 22
Q ss_pred cccccccccEEEeeccccccccccchhhccccccceeEEecCCCceeEeecCCCCccccccccccceeecccccccceec
Q 038204 96 SSVSFRNLTDLQVWGCKELMKLVTSSTAKSLVRLRIMKVCGSRAMTQVVTSEKDGAEDEIVFSNLKALTLLDLDSLTSFC 175 (254)
Q Consensus 96 ~~~~~~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~C~~l~~i~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~ 175 (254)
+..+++|+.|++++|. ++.+ .....+++|+.|++++|. +..+. ....+++|+.|++.++ .+++++
T Consensus 130 -l~~l~~L~~L~l~~n~-l~~~---~~l~~l~~L~~L~L~~N~-l~~~~--------~l~~l~~L~~L~L~~N-~i~~l~ 194 (291)
T 1h6t_A 130 -LVHLPQLESLYLGNNK-ITDI---TVLSRLTKLDTLSLEDNQ-ISDIV--------PLAGLTKLQNLYLSKN-HISDLR 194 (291)
T ss_dssp -GGGCTTCCEEECCSSC-CCCC---GGGGGCTTCSEEECCSSC-CCCCG--------GGTTCTTCCEEECCSS-CCCBCG
T ss_pred -hcCCCCCCEEEccCCc-CCcc---hhhccCCCCCEEEccCCc-cccch--------hhcCCCccCEEECCCC-cCCCCh
Confidence 4556666666666552 3333 234556666666666663 32221 1334677777777766 555554
Q ss_pred CCCccccCCCcCeEEEeCCC
Q 038204 176 SGNYTFKFPSLRDLEVIGCP 195 (254)
Q Consensus 176 ~~~~~~~~~sL~~L~i~~Cp 195 (254)
. ...+++|+.|++++++
T Consensus 195 ~---l~~l~~L~~L~l~~n~ 211 (291)
T 1h6t_A 195 A---LAGLKNLDVLELFSQE 211 (291)
T ss_dssp G---GTTCTTCSEEEEEEEE
T ss_pred h---hccCCCCCEEECcCCc
Confidence 3 2456778888777764
No 44
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.17 E-value=1e-10 Score=107.49 Aligned_cols=168 Identities=14% Similarity=0.093 Sum_probs=122.8
Q ss_pred ceechHHHhhCCCCcEEEEecccceEecCCCCccccccCCCCcccEEeccCCcccccccccCCccccCCCCccEEEEecC
Q 038204 7 ACFPLGLLEKFRNLEILYLSRTSYTEILSNEGHSEKHVGKFSQVKHLQPYKLNDLKQLWKQGSKLDFIFTNLEILRVYCC 86 (254)
Q Consensus 7 ~~~P~~~~~~l~~L~~L~l~~c~l~~l~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~l~~~~~~~~~~~~~L~~L~l~~C 86 (254)
..+|.. +..+++|+.|++++|.+..+++. ..++.+++|++|+++++. +.... ......+++|++|++++|
T Consensus 389 ~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~-----~~~~~l~~L~~L~l~~n~-l~~~~---~~~~~~l~~L~~L~l~~n 458 (606)
T 3vq2_A 389 IIMSAN-FMGLEELQHLDFQHSTLKRVTEF-----SAFLSLEKLLYLDISYTN-TKIDF---DGIFLGLTSLNTLKMAGN 458 (606)
T ss_dssp EEECCC-CTTCTTCCEEECTTSEEESTTTT-----TTTTTCTTCCEEECTTSC-CEECC---TTTTTTCTTCCEEECTTC
T ss_pred ccchhh-ccCCCCCCeeECCCCccCCccCh-----hhhhccccCCEEECcCCC-CCccc---hhhhcCCCCCCEEECCCC
Confidence 345533 46799999999999977655431 124568999999999875 33321 222466899999999998
Q ss_pred CCcceecCCcccccccccEEEeeccccccccccchhhccccccceeEEecCCCceeEeecCCCCccccccccccceeecc
Q 038204 87 QNLIVLLPSSSVSFRNLTDLQVWGCKELMKLVTSSTAKSLVRLRIMKVCGSRAMTQVVTSEKDGAEDEIVFSNLKALTLL 166 (254)
Q Consensus 87 ~~L~~l~p~~~~~~~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~C~~l~~i~~~~~~~~~~~~~~~~L~~L~l~ 166 (254)
.--....|..+..+++|+.|++++| +++..++ .....+++|++|++++|. +..+.. .....+++|+.|++.
T Consensus 459 ~l~~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~-~~~~~l~~L~~L~Ls~N~-l~~~~~------~~~~~l~~L~~L~l~ 529 (606)
T 3vq2_A 459 SFKDNTLSNVFANTTNLTFLDLSKC-QLEQISW-GVFDTLHRLQLLNMSHNN-LLFLDS------SHYNQLYSLSTLDCS 529 (606)
T ss_dssp EEGGGEECSCCTTCTTCCEEECTTS-CCCEECT-TTTTTCTTCCEEECCSSC-CSCEEG------GGTTTCTTCCEEECT
T ss_pred cCCCcchHHhhccCCCCCEEECCCC-cCCccCh-hhhcccccCCEEECCCCc-CCCcCH------HHccCCCcCCEEECC
Confidence 5443233666788999999999999 4555543 346789999999999995 544432 134468899999999
Q ss_pred cccccceecCCCccccCC-CcCeEEEeCCCC
Q 038204 167 DLDSLTSFCSGNYTFKFP-SLRDLEVIGCPK 196 (254)
Q Consensus 167 ~c~~L~~~~~~~~~~~~~-sL~~L~i~~Cp~ 196 (254)
++ +++.++.. ...++ +|++|+++++|-
T Consensus 530 ~N-~l~~~p~~--~~~l~~~L~~l~l~~N~~ 557 (606)
T 3vq2_A 530 FN-RIETSKGI--LQHFPKSLAFFNLTNNSV 557 (606)
T ss_dssp TS-CCCCEESC--GGGSCTTCCEEECCSCCC
T ss_pred CC-cCcccCHh--HhhhcccCcEEEccCCCc
Confidence 98 58888875 35676 599999998763
No 45
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.15 E-value=1.2e-09 Score=96.93 Aligned_cols=125 Identities=14% Similarity=0.177 Sum_probs=83.2
Q ss_pred CCccEEEEecCCCcceecCCcccccccccEEEeeccccccccccchhhccccccceeEEecCCCceeEeecCCCCccccc
Q 038204 76 TNLEILRVYCCQNLIVLLPSSSVSFRNLTDLQVWGCKELMKLVTSSTAKSLVRLRIMKVCGSRAMTQVVTSEKDGAEDEI 155 (254)
Q Consensus 76 ~~L~~L~l~~C~~L~~l~p~~~~~~~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~C~~l~~i~~~~~~~~~~~~ 155 (254)
++|++|+++++. +....|..+..+++|++|++++|. ++.+++ .....+++|++|++++|. +..+.. ....
T Consensus 275 ~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~-~~~~~l~~L~~L~Ls~N~-l~~~~~------~~~~ 344 (455)
T 3v47_A 275 SGVKTCDLSKSK-IFALLKSVFSHFTDLEQLTLAQNE-INKIDD-NAFWGLTHLLKLNLSQNF-LGSIDS------RMFE 344 (455)
T ss_dssp SCCCEEECCSSC-CCEECTTTTTTCTTCCEEECTTSC-CCEECT-TTTTTCTTCCEEECCSSC-CCEECG------GGGT
T ss_pred cCceEEEecCcc-ccccchhhcccCCCCCEEECCCCc-ccccCh-hHhcCcccCCEEECCCCc-cCCcCh------hHhc
Confidence 456666666653 334435556778888888888874 444432 345678888999998884 444432 1344
Q ss_pred cccccceeecccccccceecCCCccccCCCcCeEEEeCCCCCcccCCCCC-CCCC--eEEE
Q 038204 156 VFSNLKALTLLDLDSLTSFCSGNYTFKFPSLRDLEVIGCPKMKIFTTGEL-CTPP--RVNV 213 (254)
Q Consensus 156 ~~~~L~~L~l~~c~~L~~~~~~~~~~~~~sL~~L~i~~Cp~L~~lp~~~~-~~~~--~~~i 213 (254)
.+++|+.|++.++ +++.+.... ...+++|++|+++++ +++.+|.... ..+. .+.+
T Consensus 345 ~l~~L~~L~Ls~N-~l~~~~~~~-~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l 402 (455)
T 3v47_A 345 NLDKLEVLDLSYN-HIRALGDQS-FLGLPNLKELALDTN-QLKSVPDGIFDRLTSLQKIWL 402 (455)
T ss_dssp TCTTCCEEECCSS-CCCEECTTT-TTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEEC
T ss_pred CcccCCEEECCCC-cccccChhh-ccccccccEEECCCC-ccccCCHhHhccCCcccEEEc
Confidence 5889999999987 667664432 356899999999997 5778887543 2333 5555
No 46
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.15 E-value=1.6e-10 Score=97.08 Aligned_cols=153 Identities=13% Similarity=0.145 Sum_probs=117.3
Q ss_pred hhCCCCcEEEEecccceEecCCCCccccccCCCCcccEEeccCCcccccccccCCccccCCCCccEEEEecCCCcceecC
Q 038204 15 EKFRNLEILYLSRTSYTEILSNEGHSEKHVGKFSQVKHLQPYKLNDLKQLWKQGSKLDFIFTNLEILRVYCCQNLIVLLP 94 (254)
Q Consensus 15 ~~l~~L~~L~l~~c~l~~l~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~l~~~~~~~~~~~~~L~~L~l~~C~~L~~l~p 94 (254)
..+++|+.|++++|.++.+.. ++.+++|++|+++++ .++.+.. ...+++|++|+++++. ++.+ +
T Consensus 43 ~~l~~L~~L~l~~~~i~~~~~--------~~~l~~L~~L~L~~n-~l~~~~~-----l~~l~~L~~L~l~~n~-l~~~-~ 106 (291)
T 1h6t_A 43 NELNSIDQIIANNSDIKSVQG--------IQYLPNVTKLFLNGN-KLTDIKP-----LANLKNLGWLFLDENK-VKDL-S 106 (291)
T ss_dssp HHHHTCCEEECTTSCCCCCTT--------GGGCTTCCEEECCSS-CCCCCGG-----GTTCTTCCEEECCSSC-CCCG-G
T ss_pred hhcCcccEEEccCCCcccChh--------HhcCCCCCEEEccCC-ccCCCcc-----cccCCCCCEEECCCCc-CCCC-h
Confidence 467899999999997776633 566999999999886 4554421 5678999999999974 6665 4
Q ss_pred CcccccccccEEEeeccccccccccchhhccccccceeEEecCCCceeEeecCCCCccccccccccceeeccccccccee
Q 038204 95 SSSVSFRNLTDLQVWGCKELMKLVTSSTAKSLVRLRIMKVCGSRAMTQVVTSEKDGAEDEIVFSNLKALTLLDLDSLTSF 174 (254)
Q Consensus 95 ~~~~~~~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~C~~l~~i~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~ 174 (254)
. +..+++|++|++++|. ++.+ .....+++|+.|++++|. +..+ . ....+++|+.|++.++ +++.+
T Consensus 107 ~-l~~l~~L~~L~L~~n~-i~~~---~~l~~l~~L~~L~l~~n~-l~~~-~-------~l~~l~~L~~L~L~~N-~l~~~ 171 (291)
T 1h6t_A 107 S-LKDLKKLKSLSLEHNG-ISDI---NGLVHLPQLESLYLGNNK-ITDI-T-------VLSRLTKLDTLSLEDN-QISDI 171 (291)
T ss_dssp G-GTTCTTCCEEECTTSC-CCCC---GGGGGCTTCCEEECCSSC-CCCC-G-------GGGGCTTCSEEECCSS-CCCCC
T ss_pred h-hccCCCCCEEECCCCc-CCCC---hhhcCCCCCCEEEccCCc-CCcc-h-------hhccCCCCCEEEccCC-ccccc
Confidence 4 7889999999999984 5555 346789999999999985 4433 1 4456899999999987 66666
Q ss_pred cCCCccccCCCcCeEEEeCCCCCcccCC
Q 038204 175 CSGNYTFKFPSLRDLEVIGCPKMKIFTT 202 (254)
Q Consensus 175 ~~~~~~~~~~sL~~L~i~~Cp~L~~lp~ 202 (254)
.. ...+++|++|+++++ +++.+|.
T Consensus 172 ~~---l~~l~~L~~L~L~~N-~i~~l~~ 195 (291)
T 1h6t_A 172 VP---LAGLTKLQNLYLSKN-HISDLRA 195 (291)
T ss_dssp GG---GTTCTTCCEEECCSS-CCCBCGG
T ss_pred hh---hcCCCccCEEECCCC-cCCCChh
Confidence 54 357899999999998 4666653
No 47
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.14 E-value=1e-09 Score=93.58 Aligned_cols=89 Identities=16% Similarity=0.138 Sum_probs=43.9
Q ss_pred echHHHhhCCCCcEEEEecccceEecCCCCccccccCCCCcccEEeccCCcccccccccCCccccCCCCccEEEEecCCC
Q 038204 9 FPLGLLEKFRNLEILYLSRTSYTEILSNEGHSEKHVGKFSQVKHLQPYKLNDLKQLWKQGSKLDFIFTNLEILRVYCCQN 88 (254)
Q Consensus 9 ~P~~~~~~l~~L~~L~l~~c~l~~l~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~l~~~~~~~~~~~~~L~~L~l~~C~~ 88 (254)
+|+..+.++++|++|++++|.++.+.+ ..++.+++|++|+++++ .++.+.. ..+++|++|+++++ .
T Consensus 69 ~~~~~~~~l~~L~~L~L~~n~l~~~~~------~~~~~l~~L~~L~L~~n-~l~~l~~------~~~~~L~~L~l~~n-~ 134 (332)
T 2ft3_A 69 LRKDDFKGLQHLYALVLVNNKISKIHE------KAFSPLRKLQKLYISKN-HLVEIPP------NLPSSLVELRIHDN-R 134 (332)
T ss_dssp ECTTTTTTCTTCCEEECCSSCCCEECG------GGSTTCTTCCEEECCSS-CCCSCCS------SCCTTCCEEECCSS-C
T ss_pred cCHhHhhCCCCCcEEECCCCccCccCH------hHhhCcCCCCEEECCCC-cCCccCc------cccccCCEEECCCC-c
Confidence 333334456666666666665554422 12344666666666554 2333211 11255666666554 2
Q ss_pred cceecCCcccccccccEEEeecc
Q 038204 89 LIVLLPSSSVSFRNLTDLQVWGC 111 (254)
Q Consensus 89 L~~l~p~~~~~~~~L~~L~i~~C 111 (254)
+..+.+..+..+++|+.|+++++
T Consensus 135 i~~~~~~~~~~l~~L~~L~l~~n 157 (332)
T 2ft3_A 135 IRKVPKGVFSGLRNMNCIEMGGN 157 (332)
T ss_dssp CCCCCSGGGSSCSSCCEEECCSC
T ss_pred cCccCHhHhCCCccCCEEECCCC
Confidence 33442323445666666666555
No 48
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.14 E-value=4.5e-10 Score=101.41 Aligned_cols=169 Identities=15% Similarity=0.072 Sum_probs=108.5
Q ss_pred CCCCcccEEeccCCcccccccccCCccccCCCCccEEEEecCCCcceec--CCcccccccccEEEeeccccccc-cccch
Q 038204 45 GKFSQVKHLQPYKLNDLKQLWKQGSKLDFIFTNLEILRVYCCQNLIVLL--PSSSVSFRNLTDLQVWGCKELMK-LVTSS 121 (254)
Q Consensus 45 ~~~~~L~~L~L~~~~~L~~l~~~~~~~~~~~~~L~~L~l~~C~~L~~l~--p~~~~~~~~L~~L~i~~C~~L~~-l~~~~ 121 (254)
+.+++|++|+++++. +... .+.....+++|++|++++|. ++.+. |..+..+++|++|+++++. ++. ++. .
T Consensus 321 ~~l~~L~~L~Ls~n~-l~~~---~~~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~~~l~~L~~L~Ls~N~-l~~~l~~-~ 393 (520)
T 2z7x_B 321 SKISPFLHLDFSNNL-LTDT---VFENCGHLTELETLILQMNQ-LKELSKIAEMTTQMKSLQQLDISQNS-VSYDEKK-G 393 (520)
T ss_dssp SSCCCCCEEECCSSC-CCTT---TTTTCCCCSSCCEEECCSSC-CCBHHHHHHHHTTCTTCCEEECCSSC-CBCCGGG-C
T ss_pred hhCCcccEEEeECCc-cChh---hhhhhccCCCCCEEEccCCc-cCccccchHHHhhCCCCCEEECCCCc-CCccccc-c
Confidence 357888888887763 3331 12224567888888888874 44321 2335678888888888875 333 432 2
Q ss_pred hhccccccceeEEecCCCceeEeecCCCCccccccc-cccceeecccccccceecCCCccccCCCcCeEEEeCCCCCccc
Q 038204 122 TAKSLVRLRIMKVCGSRAMTQVVTSEKDGAEDEIVF-SNLKALTLLDLDSLTSFCSGNYTFKFPSLRDLEVIGCPKMKIF 200 (254)
Q Consensus 122 ~~~~l~~L~~L~i~~C~~l~~i~~~~~~~~~~~~~~-~~L~~L~l~~c~~L~~~~~~~~~~~~~sL~~L~i~~Cp~L~~l 200 (254)
....+++|+.|++++|.--..++ ..+ ++|+.|++.++ +++.++... ..+++|++|++++| +++.+
T Consensus 394 ~~~~l~~L~~L~Ls~N~l~~~~~----------~~l~~~L~~L~Ls~N-~l~~ip~~~--~~l~~L~~L~L~~N-~l~~l 459 (520)
T 2z7x_B 394 DCSWTKSLLSLNMSSNILTDTIF----------RCLPPRIKVLDLHSN-KIKSIPKQV--VKLEALQELNVASN-QLKSV 459 (520)
T ss_dssp SCCCCTTCCEEECCSSCCCGGGG----------GSCCTTCCEEECCSS-CCCCCCGGG--GGCTTCCEEECCSS-CCCCC
T ss_pred hhccCccCCEEECcCCCCCcchh----------hhhcccCCEEECCCC-cccccchhh--hcCCCCCEEECCCC-cCCcc
Confidence 35667888888888885221111 123 69999999988 777777643 58899999999999 68889
Q ss_pred CCC-CCCCCC--eEEEeeCCCCCcccccccHHHHHHHHHHh
Q 038204 201 TTG-ELCTPP--RVNVWYGEGDGECRWANDLNVTIQELHAE 238 (254)
Q Consensus 201 p~~-~~~~~~--~~~i~~~~~~~~~~~~~d~~~~i~~~~~~ 238 (254)
|.. ....+. .+.+ .+..|.+++++..-++.|...
T Consensus 460 ~~~~~~~l~~L~~L~l----~~N~~~c~c~~~~~~~~~~~~ 496 (520)
T 2z7x_B 460 PDGIFDRLTSLQKIWL----HTNPWDCSCPRIDYLSRWLNK 496 (520)
T ss_dssp CTTTTTTCTTCCEEEC----CSSCBCCCHHHHHHHHHHHHH
T ss_pred CHHHhccCCcccEEEC----cCCCCcccCCchHHHHHHHHh
Confidence 876 333343 5555 344566666644443555443
No 49
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.13 E-value=2e-10 Score=96.75 Aligned_cols=165 Identities=21% Similarity=0.177 Sum_probs=109.5
Q ss_pred hCCCCcEEEEecccceEecCC----C-------------Cccc-cccCCCCcccEEeccCCcccccccccCCccccCCCC
Q 038204 16 KFRNLEILYLSRTSYTEILSN----E-------------GHSE-KHVGKFSQVKHLQPYKLNDLKQLWKQGSKLDFIFTN 77 (254)
Q Consensus 16 ~l~~L~~L~l~~c~l~~l~~~----~-------------~~~~-~~~~~~~~L~~L~L~~~~~L~~l~~~~~~~~~~~~~ 77 (254)
.+++|++|++++|.+..++.. . +... ..+..+++|++|++.++. +..+. ......+++
T Consensus 76 ~~~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~---~~~~~~l~~ 151 (306)
T 2z66_A 76 GTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTH-TRVAF---NGIFNGLSS 151 (306)
T ss_dssp SCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSC-CEECS---TTTTTTCTT
T ss_pred cccccCEEECCCCccccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCc-CCccc---hhhcccCcC
Confidence 567777777777654444320 0 0000 124568999999998874 33332 122456899
Q ss_pred ccEEEEecCCCcceecCCcccccccccEEEeeccccccccccchhhccccccceeEEecCCCceeEeecCCCCccccccc
Q 038204 78 LEILRVYCCQNLIVLLPSSSVSFRNLTDLQVWGCKELMKLVTSSTAKSLVRLRIMKVCGSRAMTQVVTSEKDGAEDEIVF 157 (254)
Q Consensus 78 L~~L~l~~C~~L~~l~p~~~~~~~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~C~~l~~i~~~~~~~~~~~~~~ 157 (254)
|++|+++++.--....|..+..+++|++|++++|. ++.+++ .....+++|+.|+++++. +..+.. .....+
T Consensus 152 L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~-~~~~~l~~L~~L~L~~N~-l~~~~~------~~~~~l 222 (306)
T 2z66_A 152 LEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ-LEQLSP-TAFNSLSSLQVLNMSHNN-FFSLDT------FPYKCL 222 (306)
T ss_dssp CCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSC-CCEECT-TTTTTCTTCCEEECTTSC-CSBCCS------GGGTTC
T ss_pred CCEEECCCCccccccchhHHhhCcCCCEEECCCCC-cCCcCH-HHhcCCCCCCEEECCCCc-cCccCh------hhccCc
Confidence 99999999853332336668889999999999984 555543 346788999999999986 433321 133457
Q ss_pred cccceeecccccccceecCCCccccCC-CcCeEEEeCCC
Q 038204 158 SNLKALTLLDLDSLTSFCSGNYTFKFP-SLRDLEVIGCP 195 (254)
Q Consensus 158 ~~L~~L~l~~c~~L~~~~~~~~~~~~~-sL~~L~i~~Cp 195 (254)
++|+.|++.++ +++...... ...+| +|++|++++++
T Consensus 223 ~~L~~L~L~~N-~l~~~~~~~-~~~~~~~L~~L~L~~N~ 259 (306)
T 2z66_A 223 NSLQVLDYSLN-HIMTSKKQE-LQHFPSSLAFLNLTQND 259 (306)
T ss_dssp TTCCEEECTTS-CCCBCSSSS-CCCCCTTCCEEECTTCC
T ss_pred ccCCEeECCCC-CCcccCHHH-HHhhhccCCEEEccCCC
Confidence 89999999988 555544332 23454 89999998875
No 50
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.12 E-value=1.7e-10 Score=106.51 Aligned_cols=148 Identities=16% Similarity=0.196 Sum_probs=95.0
Q ss_pred HhhCCCCcEEEEecccceEecCCCCccccccCCCCcccEEeccCCcccccccccCCccccCCCCccEEEEecCCCcceec
Q 038204 14 LEKFRNLEILYLSRTSYTEILSNEGHSEKHVGKFSQVKHLQPYKLNDLKQLWKQGSKLDFIFTNLEILRVYCCQNLIVLL 93 (254)
Q Consensus 14 ~~~l~~L~~L~l~~c~l~~l~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~l~~~~~~~~~~~~~L~~L~l~~C~~L~~l~ 93 (254)
+..+++|+.|+|++|.+..+++ ++.+++|+.|.|+++ .+..+ .....+++|+.|++++|. +..+
T Consensus 61 l~~l~~L~~L~Ls~N~l~~~~~--------l~~l~~L~~L~Ls~N-~l~~l-----~~l~~l~~L~~L~Ls~N~-l~~l- 124 (605)
T 1m9s_A 61 IQYLPNVTKLFLNGNKLTDIKP--------LTNLKNLGWLFLDEN-KIKDL-----SSLKDLKKLKSLSLEHNG-ISDI- 124 (605)
T ss_dssp GGGCTTCCEEECTTSCCCCCGG--------GGGCTTCCEEECCSS-CCCCC-----TTSTTCTTCCEEECTTSC-CCCC-
T ss_pred HccCCCCCEEEeeCCCCCCChh--------hccCCCCCEEECcCC-CCCCC-----hhhccCCCCCEEEecCCC-CCCC-
Confidence 3466777777777776554433 445777777777665 34433 124557777777777763 4444
Q ss_pred CCcccccccccEEEeeccccccccccchhhccccccceeEEecCCCceeEeecCCCCccccccccccceeecccccccce
Q 038204 94 PSSSVSFRNLTDLQVWGCKELMKLVTSSTAKSLVRLRIMKVCGSRAMTQVVTSEKDGAEDEIVFSNLKALTLLDLDSLTS 173 (254)
Q Consensus 94 p~~~~~~~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~C~~l~~i~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~ 173 (254)
+. +..+++|+.|++++|. ++.+ .....+++|+.|++++|. +..++ ....+++|+.|++.++ ++.+
T Consensus 125 ~~-l~~l~~L~~L~Ls~N~-l~~l---~~l~~l~~L~~L~Ls~N~-l~~~~--------~l~~l~~L~~L~Ls~N-~i~~ 189 (605)
T 1m9s_A 125 NG-LVHLPQLESLYLGNNK-ITDI---TVLSRLTKLDTLSLEDNQ-ISDIV--------PLAGLTKLQNLYLSKN-HISD 189 (605)
T ss_dssp GG-GGGCTTCSEEECCSSC-CCCC---GGGGSCTTCSEEECCSSC-CCCCG--------GGTTCTTCCEEECCSS-CCCB
T ss_pred cc-ccCCCccCEEECCCCc-cCCc---hhhcccCCCCEEECcCCc-CCCch--------hhccCCCCCEEECcCC-CCCC
Confidence 33 6677788888887773 4444 345677788888887774 33322 1345788888888876 6666
Q ss_pred ecCCCccccCCCcCeEEEeCCC
Q 038204 174 FCSGNYTFKFPSLRDLEVIGCP 195 (254)
Q Consensus 174 ~~~~~~~~~~~sL~~L~i~~Cp 195 (254)
++. ...+++|+.|++++|+
T Consensus 190 l~~---l~~l~~L~~L~L~~N~ 208 (605)
T 1m9s_A 190 LRA---LAGLKNLDVLELFSQE 208 (605)
T ss_dssp CGG---GTTCTTCSEEECCSEE
T ss_pred ChH---HccCCCCCEEEccCCc
Confidence 532 3567888888888774
No 51
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.12 E-value=4e-10 Score=102.59 Aligned_cols=197 Identities=16% Similarity=0.086 Sum_probs=128.5
Q ss_pred hhCCCCcEEEEecccceEecCCCCccccccCCCCcccEEeccCCcccccccccCCccccCCCCccEEEEecCCCcceecC
Q 038204 15 EKFRNLEILYLSRTSYTEILSNEGHSEKHVGKFSQVKHLQPYKLNDLKQLWKQGSKLDFIFTNLEILRVYCCQNLIVLLP 94 (254)
Q Consensus 15 ~~l~~L~~L~l~~c~l~~l~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~l~~~~~~~~~~~~~L~~L~l~~C~~L~~l~p 94 (254)
..+++|++|++++|.+..+.. .......+++|++|++.++. +..+... ...+++|++|++.+|. +....+
T Consensus 344 ~~~~~L~~L~l~~n~l~~~~~----~~~~~~~~~~L~~L~l~~n~-l~~~~~~----~~~l~~L~~L~l~~n~-l~~~~~ 413 (570)
T 2z63_A 344 VDLPSLEFLDLSRNGLSFKGC----CSQSDFGTTSLKYLDLSFNG-VITMSSN----FLGLEQLEHLDFQHSN-LKQMSE 413 (570)
T ss_dssp CBCTTCCEEECCSSCCBEEEE----EEHHHHTCSCCCEEECCSCS-EEEEEEE----EETCTTCCEEECTTSE-EESCTT
T ss_pred ccCCCCCEEeCcCCccCcccc----ccccccccCccCEEECCCCc-ccccccc----ccccCCCCEEEccCCc-cccccc
Confidence 578999999999997665421 01124468999999998874 4443221 4568999999999874 443323
Q ss_pred -CcccccccccEEEeeccccccccccchhhccccccceeEEecCCCce-eEeecCCCCccccccccccceeecccccccc
Q 038204 95 -SSSVSFRNLTDLQVWGCKELMKLVTSSTAKSLVRLRIMKVCGSRAMT-QVVTSEKDGAEDEIVFSNLKALTLLDLDSLT 172 (254)
Q Consensus 95 -~~~~~~~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~C~~l~-~i~~~~~~~~~~~~~~~~L~~L~l~~c~~L~ 172 (254)
..+..+++|++|++++|.- ....+ .....+++|++|++++|.-.. .++. ....+++|+.|++.++ +++
T Consensus 414 ~~~~~~l~~L~~L~l~~n~l-~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~p~-------~~~~l~~L~~L~l~~n-~l~ 483 (570)
T 2z63_A 414 FSVFLSLRNLIYLDISHTHT-RVAFN-GIFNGLSSLEVLKMAGNSFQENFLPD-------IFTELRNLTFLDLSQC-QLE 483 (570)
T ss_dssp SCTTTTCTTCCEEECTTSCC-EECCT-TTTTTCTTCCEEECTTCEEGGGEECS-------CCTTCTTCCEEECTTS-CCC
T ss_pred hhhhhcCCCCCEEeCcCCcc-cccch-hhhhcCCcCcEEECcCCcCccccchh-------hhhcccCCCEEECCCC-ccc
Confidence 3467889999999999853 33322 356788999999999996321 2332 4456889999999988 566
Q ss_pred eecCCCccccCCCcCeEEEeCCCCCcccCCCCC-CCCC--eEEEeeCCCCCcccccccHHHHHHHHHH
Q 038204 173 SFCSGNYTFKFPSLRDLEVIGCPKMKIFTTGEL-CTPP--RVNVWYGEGDGECRWANDLNVTIQELHA 237 (254)
Q Consensus 173 ~~~~~~~~~~~~sL~~L~i~~Cp~L~~lp~~~~-~~~~--~~~i~~~~~~~~~~~~~d~~~~i~~~~~ 237 (254)
.+.... ...+++|++|++++| +++.+|.... ..+. .+.+ .+..|.++.....-++.|+.
T Consensus 484 ~~~~~~-~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l----~~N~~~~~~~~~~~~~~wl~ 545 (570)
T 2z63_A 484 QLSPTA-FNSLSSLQVLNMASN-QLKSVPDGIFDRLTSLQKIWL----HTNPWDCSCPRIDYLSRWLN 545 (570)
T ss_dssp EECTTT-TTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEEC----CSSCBCCCTTTTHHHHHHHH
T ss_pred cCChhh-hhcccCCCEEeCCCC-cCCCCCHHHhhcccCCcEEEe----cCCcccCCCcchHHHHHHHH
Confidence 664322 246789999999998 5777765433 3343 5555 23344444432233434443
No 52
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.11 E-value=1.3e-09 Score=93.75 Aligned_cols=182 Identities=13% Similarity=0.094 Sum_probs=131.7
Q ss_pred CCCceechHHHhhCCCCcEEEEecccc-eEecCCCCccccccCCCCcccEEeccCCcccccccccCCccccCCCCccEEE
Q 038204 4 DDSACFPLGLLEKFRNLEILYLSRTSY-TEILSNEGHSEKHVGKFSQVKHLQPYKLNDLKQLWKQGSKLDFIFTNLEILR 82 (254)
Q Consensus 4 ~~~~~~P~~~~~~l~~L~~L~l~~c~l-~~l~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~l~~~~~~~~~~~~~L~~L~ 82 (254)
+.-..+|...+.++++|++|+|++|.+ +.++. .....+++++++.+.++.+++.+..+. ...+++|++|+
T Consensus 40 N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~------~~f~~L~~l~~~l~~~~N~l~~l~~~~---f~~l~~L~~L~ 110 (350)
T 4ay9_X 40 TKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEA------DVFSNLPKLHEIRIEKANNLLYINPEA---FQNLPNLQYLL 110 (350)
T ss_dssp CCCSEECTTSSTTCTTCCEEEEECCTTCCEECT------TSBCSCTTCCEEEEEEETTCCEECTTS---BCCCTTCCEEE
T ss_pred CcCCCcCHHHHcCCCCCCEEECcCCCCCCccCh------hHhhcchhhhhhhcccCCcccccCchh---hhhcccccccc
Confidence 444567877778999999999999955 44443 123457788887777777888764332 45689999999
Q ss_pred EecCCCcceecCCcccccccccEEEeeccccccccccchhhccccccceeEEecCCCceeEeecCCCCccccccccccce
Q 038204 83 VYCCQNLIVLLPSSSVSFRNLTDLQVWGCKELMKLVTSSTAKSLVRLRIMKVCGSRAMTQVVTSEKDGAEDEIVFSNLKA 162 (254)
Q Consensus 83 l~~C~~L~~l~p~~~~~~~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~C~~l~~i~~~~~~~~~~~~~~~~L~~ 162 (254)
+.++ +++.+.+.......++..|++.++.++..++..........++.|+++++. ++++.. .....++|+.
T Consensus 111 l~~n-~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~-i~~i~~-------~~f~~~~L~~ 181 (350)
T 4ay9_X 111 ISNT-GIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNG-IQEIHN-------SAFNGTQLDE 181 (350)
T ss_dssp EEEE-CCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSC-CCEECT-------TSSTTEEEEE
T ss_pred cccc-ccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccccc-ccCCCh-------hhccccchhH
Confidence 9986 455553333445667888999999888888654444444568889998874 666654 2223568999
Q ss_pred eecccccccceecCCCccccCCCcCeEEEeCCCCCcccCCCCC
Q 038204 163 LTLLDLDSLTSFCSGNYTFKFPSLRDLEVIGCPKMKIFTTGEL 205 (254)
Q Consensus 163 L~l~~c~~L~~~~~~~~~~~~~sL~~L~i~~Cp~L~~lp~~~~ 205 (254)
|.+.++..++.++.+. ...+++|+.|+++++ +++.+|.+..
T Consensus 182 l~l~~~n~l~~i~~~~-f~~l~~L~~LdLs~N-~l~~lp~~~~ 222 (350)
T 4ay9_X 182 LNLSDNNNLEELPNDV-FHGASGPVILDISRT-RIHSLPSYGL 222 (350)
T ss_dssp EECTTCTTCCCCCTTT-TTTEECCSEEECTTS-CCCCCCSSSC
T ss_pred HhhccCCcccCCCHHH-hccCcccchhhcCCC-CcCccChhhh
Confidence 9999999999998753 346789999999998 6899987644
No 53
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.11 E-value=3.2e-10 Score=105.23 Aligned_cols=117 Identities=9% Similarity=0.220 Sum_probs=81.4
Q ss_pred echHHHhhCCCCcEEEEecccceE------------------ecCCCCccccccC--CCCcccEEeccCCcccccccccC
Q 038204 9 FPLGLLEKFRNLEILYLSRTSYTE------------------ILSNEGHSEKHVG--KFSQVKHLQPYKLNDLKQLWKQG 68 (254)
Q Consensus 9 ~P~~~~~~l~~L~~L~l~~c~l~~------------------l~~~~~~~~~~~~--~~~~L~~L~L~~~~~L~~l~~~~ 68 (254)
+|.+ ++++++|++|++++|.++. ++. .++ .+++|++|++.++.-...++
T Consensus 198 ip~~-l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~-------~l~~~~l~~L~~L~L~~n~l~~~~p--- 266 (636)
T 4eco_A 198 VSKA-VMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTE-------DLKWDNLKDLTDVEVYNCPNLTKLP--- 266 (636)
T ss_dssp ECGG-GGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTS-------CCCGGGCTTCCEEEEECCTTCSSCC---
T ss_pred CCHH-HhcccCCCEEECcCCccccccccccccccccchhcccCch-------hhhhcccCCCCEEEecCCcCCccCh---
Confidence 7876 5689999999999997766 443 355 78999999998875444432
Q ss_pred CccccCCCCccEEEEecCCCcce-ecCCccccc------ccccEEEeeccccccccccchhhccccccceeEEecCC
Q 038204 69 SKLDFIFTNLEILRVYCCQNLIV-LLPSSSVSF------RNLTDLQVWGCKELMKLVTSSTAKSLVRLRIMKVCGSR 138 (254)
Q Consensus 69 ~~~~~~~~~L~~L~l~~C~~L~~-l~p~~~~~~------~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~C~ 138 (254)
.....+++|++|++++|..++. ..|..+..+ ++|++|++++|. ++.++.......+++|+.|+++++.
T Consensus 267 -~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~-l~~ip~~~~l~~l~~L~~L~L~~N~ 341 (636)
T 4eco_A 267 -TFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNN-LKTFPVETSLQKMKKLGMLECLYNQ 341 (636)
T ss_dssp -TTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSC-CSSCCCHHHHTTCTTCCEEECCSCC
T ss_pred -HHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCc-CCccCchhhhccCCCCCEEeCcCCc
Confidence 2255688889999888875654 224434444 888888888774 4444321246677888888888775
No 54
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.09 E-value=4.6e-10 Score=92.89 Aligned_cols=147 Identities=18% Similarity=0.146 Sum_probs=110.9
Q ss_pred HhhCCCCcEEEEecccceEecCCCCccccccCCCCcccEEeccCCcccccccccCCccccCCCCccEEEEecCCCcceec
Q 038204 14 LEKFRNLEILYLSRTSYTEILSNEGHSEKHVGKFSQVKHLQPYKLNDLKQLWKQGSKLDFIFTNLEILRVYCCQNLIVLL 93 (254)
Q Consensus 14 ~~~l~~L~~L~l~~c~l~~l~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~l~~~~~~~~~~~~~L~~L~l~~C~~L~~l~ 93 (254)
+..+++|++|++++|.++.+.. ++.+++|++|+++++ .++.+.. ...+++|++|+++++ +++.+
T Consensus 37 ~~~l~~L~~L~l~~n~i~~l~~--------l~~l~~L~~L~L~~N-~i~~~~~-----l~~l~~L~~L~L~~N-~l~~l- 100 (263)
T 1xeu_A 37 QKELSGVQNFNGDNSNIQSLAG--------MQFFTNLKELHLSHN-QISDLSP-----LKDLTKLEELSVNRN-RLKNL- 100 (263)
T ss_dssp HHHHTTCSEEECTTSCCCCCTT--------GGGCTTCCEEECCSS-CCCCCGG-----GTTCSSCCEEECCSS-CCSCC-
T ss_pred hhhcCcCcEEECcCCCcccchH--------HhhCCCCCEEECCCC-ccCCChh-----hccCCCCCEEECCCC-ccCCc-
Confidence 4578999999999998776543 566899999999886 4555422 567899999999987 56666
Q ss_pred CCcccccccccEEEeeccccccccccchhhccccccceeEEecCCCceeEeecCCCCccccccccccceeecccccccce
Q 038204 94 PSSSVSFRNLTDLQVWGCKELMKLVTSSTAKSLVRLRIMKVCGSRAMTQVVTSEKDGAEDEIVFSNLKALTLLDLDSLTS 173 (254)
Q Consensus 94 p~~~~~~~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~C~~l~~i~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~ 173 (254)
|. ... ++|+.|++++| +++.+ .....+++|+.|+++++. +..+. ....+++|+.|++.++ ++++
T Consensus 101 ~~-~~~-~~L~~L~L~~N-~l~~~---~~l~~l~~L~~L~Ls~N~-i~~~~--------~l~~l~~L~~L~L~~N-~i~~ 164 (263)
T 1xeu_A 101 NG-IPS-ACLSRLFLDNN-ELRDT---DSLIHLKNLEILSIRNNK-LKSIV--------MLGFLSKLEVLDLHGN-EITN 164 (263)
T ss_dssp TT-CCC-SSCCEEECCSS-CCSBS---GGGTTCTTCCEEECTTSC-CCBCG--------GGGGCTTCCEEECTTS-CCCB
T ss_pred Cc-ccc-CcccEEEccCC-ccCCC---hhhcCcccccEEECCCCc-CCCCh--------HHccCCCCCEEECCCC-cCcc
Confidence 43 333 89999999998 46665 346789999999999985 54431 3446889999999986 6666
Q ss_pred ecCCCccccCCCcCeEEEeCCC
Q 038204 174 FCSGNYTFKFPSLRDLEVIGCP 195 (254)
Q Consensus 174 ~~~~~~~~~~~sL~~L~i~~Cp 195 (254)
+. ....+++|+.|++++++
T Consensus 165 ~~---~l~~l~~L~~L~l~~N~ 183 (263)
T 1xeu_A 165 TG---GLTRLKKVNWIDLTGQK 183 (263)
T ss_dssp CT---TSTTCCCCCEEEEEEEE
T ss_pred hH---HhccCCCCCEEeCCCCc
Confidence 62 23578899999998875
No 55
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.09 E-value=7.8e-10 Score=93.75 Aligned_cols=92 Identities=21% Similarity=0.207 Sum_probs=46.1
Q ss_pred eechHHHhhCCCCcEEEEec-ccceEecCCCCccccccCCCCcccEEeccCCcccccccccCCccccCCCCccEEEEecC
Q 038204 8 CFPLGLLEKFRNLEILYLSR-TSYTEILSNEGHSEKHVGKFSQVKHLQPYKLNDLKQLWKQGSKLDFIFTNLEILRVYCC 86 (254)
Q Consensus 8 ~~P~~~~~~l~~L~~L~l~~-c~l~~l~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~l~~~~~~~~~~~~~L~~L~l~~C 86 (254)
.+|.. +.++++|++|++++ +.+....+ ..++.+++|++|+++++. +... .+.....+++|++|+++++
T Consensus 67 ~~~~~-l~~l~~L~~L~L~~~n~l~~~~p------~~l~~l~~L~~L~Ls~n~-l~~~---~p~~~~~l~~L~~L~Ls~N 135 (313)
T 1ogq_A 67 PIPSS-LANLPYLNFLYIGGINNLVGPIP------PAIAKLTQLHYLYITHTN-VSGA---IPDFLSQIKTLVTLDFSYN 135 (313)
T ss_dssp ECCGG-GGGCTTCSEEEEEEETTEESCCC------GGGGGCTTCSEEEEEEEC-CEEE---CCGGGGGCTTCCEEECCSS
T ss_pred ccChh-HhCCCCCCeeeCCCCCcccccCC------hhHhcCCCCCEEECcCCe-eCCc---CCHHHhCCCCCCEEeCCCC
Confidence 45554 35677777777775 35543222 124456666666665542 2211 1111334556666666554
Q ss_pred CCcceecCCcccccccccEEEeecc
Q 038204 87 QNLIVLLPSSSVSFRNLTDLQVWGC 111 (254)
Q Consensus 87 ~~L~~l~p~~~~~~~~L~~L~i~~C 111 (254)
. +....|..+..+++|++|+++++
T Consensus 136 ~-l~~~~p~~~~~l~~L~~L~L~~N 159 (313)
T 1ogq_A 136 A-LSGTLPPSISSLPNLVGITFDGN 159 (313)
T ss_dssp E-EESCCCGGGGGCTTCCEEECCSS
T ss_pred c-cCCcCChHHhcCCCCCeEECcCC
Confidence 2 22122433455556666666555
No 56
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.09 E-value=1.7e-09 Score=99.30 Aligned_cols=39 Identities=13% Similarity=0.081 Sum_probs=23.1
Q ss_pred ccccccceeecccccccceecCCCccccCCCcCeEEEeCCC
Q 038204 155 IVFSNLKALTLLDLDSLTSFCSGNYTFKFPSLRDLEVIGCP 195 (254)
Q Consensus 155 ~~~~~L~~L~l~~c~~L~~~~~~~~~~~~~sL~~L~i~~Cp 195 (254)
..+++|+.|++.++ +++.+.... ...+++|++|+++++.
T Consensus 473 ~~l~~L~~L~Ls~n-~l~~~~~~~-~~~l~~L~~L~Ls~N~ 511 (606)
T 3t6q_A 473 QTLGRLEILVLSFC-DLSSIDQHA-FTSLKMMNHVDLSHNR 511 (606)
T ss_dssp GGCTTCCEEECTTS-CCCEECTTT-TTTCTTCCEEECCSSC
T ss_pred ccCCCccEEECCCC-ccCccChhh-hccccCCCEEECCCCc
Confidence 34566777777666 455543321 2456777777777774
No 57
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.08 E-value=1e-09 Score=99.94 Aligned_cols=109 Identities=16% Similarity=0.112 Sum_probs=47.0
Q ss_pred CCCCccEEEEecCCCcceecCCcccccccccEEEeeccccccccccchhhccccccceeEEecCCCceeEeecCCCCccc
Q 038204 74 IFTNLEILRVYCCQNLIVLLPSSSVSFRNLTDLQVWGCKELMKLVTSSTAKSLVRLRIMKVCGSRAMTQVVTSEKDGAED 153 (254)
Q Consensus 74 ~~~~L~~L~l~~C~~L~~l~p~~~~~~~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~C~~l~~i~~~~~~~~~~ 153 (254)
.+++|++|++++|. +..+.+. +..+++|+.|++++|. +....+......+++|++|++++|. +..++. ..
T Consensus 371 ~~~~L~~L~l~~n~-l~~~~~~-~~~l~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~------~~ 440 (570)
T 2z63_A 371 GTTSLKYLDLSFNG-VITMSSN-FLGLEQLEHLDFQHSN-LKQMSEFSVFLSLRNLIYLDISHTH-TRVAFN------GI 440 (570)
T ss_dssp TCSCCCEEECCSCS-EEEEEEE-EETCTTCCEEECTTSE-EESCTTSCTTTTCTTCCEEECTTSC-CEECCT------TT
T ss_pred ccCccCEEECCCCc-ccccccc-ccccCCCCEEEccCCc-cccccchhhhhcCCCCCEEeCcCCc-ccccch------hh
Confidence 34555555555542 3333222 4445555555555543 2222222233455555555555553 211110 12
Q ss_pred cccccccceeeccccccc-ceecCCCccccCCCcCeEEEeCC
Q 038204 154 EIVFSNLKALTLLDLDSL-TSFCSGNYTFKFPSLRDLEVIGC 194 (254)
Q Consensus 154 ~~~~~~L~~L~l~~c~~L-~~~~~~~~~~~~~sL~~L~i~~C 194 (254)
...+++|+.|++.++.-- ..++. ....+++|+.|++++|
T Consensus 441 ~~~l~~L~~L~l~~n~l~~~~~p~--~~~~l~~L~~L~l~~n 480 (570)
T 2z63_A 441 FNGLSSLEVLKMAGNSFQENFLPD--IFTELRNLTFLDLSQC 480 (570)
T ss_dssp TTTCTTCCEEECTTCEEGGGEECS--CCTTCTTCCEEECTTS
T ss_pred hhcCCcCcEEECcCCcCccccchh--hhhcccCCCEEECCCC
Confidence 223455555555555211 12222 1234455555555555
No 58
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.06 E-value=1.4e-09 Score=101.23 Aligned_cols=177 Identities=16% Similarity=0.080 Sum_probs=95.5
Q ss_pred echHHHhhCCCCcEEEEecccceEecCCCCccccccCCCCcccEEeccCCccccccccc---------------------
Q 038204 9 FPLGLLEKFRNLEILYLSRTSYTEILSNEGHSEKHVGKFSQVKHLQPYKLNDLKQLWKQ--------------------- 67 (254)
Q Consensus 9 ~P~~~~~~l~~L~~L~l~~c~l~~l~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~l~~~--------------------- 67 (254)
+++..+..+++|+.|++++|.+....+. ...+.+++|++|++.++. +..+...
T Consensus 396 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~-----~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~~~~L~~L~l~~n~l~~~ 469 (680)
T 1ziw_A 396 IESDAFSWLGHLEVLDLGLNEIGQELTG-----QEWRGLENIFEIYLSYNK-YLQLTRNSFALVPSLQRLMLRRVALKNV 469 (680)
T ss_dssp ECTTTTTTCTTCCEEECCSSCCEEECCS-----GGGTTCTTCCEEECCSCS-EEECCTTTTTTCTTCCEEECTTSCCBCT
T ss_pred EChhhhhCCCCCCEEeCCCCcCccccCc-----ccccCcccccEEecCCCC-cceeChhhhhcCcccccchhcccccccc
Confidence 3344456788888888888866543220 113345566666665543 1111110
Q ss_pred --CCccccCCCCccEEEEecCCCcceecCCcccccccccEEEeecccccccccc-------chhhccccccceeEEecCC
Q 038204 68 --GSKLDFIFTNLEILRVYCCQNLIVLLPSSSVSFRNLTDLQVWGCKELMKLVT-------SSTAKSLVRLRIMKVCGSR 138 (254)
Q Consensus 68 --~~~~~~~~~~L~~L~l~~C~~L~~l~p~~~~~~~~L~~L~i~~C~~L~~l~~-------~~~~~~l~~L~~L~i~~C~ 138 (254)
.+.....+++|++|+++++ +++.+.+..+..+++|++|+++++. ++.++. .....++++|+.|+++++.
T Consensus 470 ~~~p~~~~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~ 547 (680)
T 1ziw_A 470 DSSPSPFQPLRNLTILDLSNN-NIANINDDMLEGLEKLEILDLQHNN-LARLWKHANPGGPIYFLKGLSHLHILNLESNG 547 (680)
T ss_dssp TCSSCTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC-CGGGGSTTSTTSCCCTTTTCTTCCEEECCSSC
T ss_pred ccCCcccccCCCCCEEECCCC-CCCcCChhhhccccccCEEeCCCCC-ccccchhhccCCcchhhcCCCCCCEEECCCCC
Confidence 0111334556666666664 3444434435556667777766653 333211 0124556667777776663
Q ss_pred CceeEeecCCCCccccccccccceeecccccccceecCCCccccCCCcCeEEEeCCCCCcccCCC
Q 038204 139 AMTQVVTSEKDGAEDEIVFSNLKALTLLDLDSLTSFCSGNYTFKFPSLRDLEVIGCPKMKIFTTG 203 (254)
Q Consensus 139 ~l~~i~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~~sL~~L~i~~Cp~L~~lp~~ 203 (254)
+..++. .....+++|+.|++.+. +++.++.+. ...+++|+.|+++++ +++.++..
T Consensus 548 -l~~i~~------~~~~~l~~L~~L~Ls~N-~l~~l~~~~-~~~l~~L~~L~L~~N-~l~~~~~~ 602 (680)
T 1ziw_A 548 -FDEIPV------EVFKDLFELKIIDLGLN-NLNTLPASV-FNNQVSLKSLNLQKN-LITSVEKK 602 (680)
T ss_dssp -CCCCCT------TTTTTCTTCCEEECCSS-CCCCCCTTT-TTTCTTCCEEECTTS-CCCBCCHH
T ss_pred -CCCCCH------HHcccccCcceeECCCC-CCCcCCHhH-hCCCCCCCEEECCCC-cCCccChh
Confidence 333322 12335677888888654 676666542 235678888888887 56666543
No 59
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.06 E-value=2e-09 Score=91.61 Aligned_cols=169 Identities=15% Similarity=0.124 Sum_probs=116.4
Q ss_pred eechHHHhhCCCCcEEEEecccceEecCCCCccccccCCCCcccEEeccCCcccccccccCCccccCCCCccEEEEecCC
Q 038204 8 CFPLGLLEKFRNLEILYLSRTSYTEILSNEGHSEKHVGKFSQVKHLQPYKLNDLKQLWKQGSKLDFIFTNLEILRVYCCQ 87 (254)
Q Consensus 8 ~~P~~~~~~l~~L~~L~l~~c~l~~l~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~l~~~~~~~~~~~~~L~~L~l~~C~ 87 (254)
.+|..+ .++|++|++++|.+..+.. ..++.+++|++|++.++. ++... ........+++|++|+++++.
T Consensus 114 ~l~~~~---~~~L~~L~l~~n~l~~~~~------~~~~~l~~L~~L~l~~n~-l~~~~-~~~~~~~~l~~L~~L~l~~n~ 182 (330)
T 1xku_A 114 ELPEKM---PKTLQELRVHENEITKVRK------SVFNGLNQMIVVELGTNP-LKSSG-IENGAFQGMKKLSYIRIADTN 182 (330)
T ss_dssp BCCSSC---CTTCCEEECCSSCCCBBCH------HHHTTCTTCCEEECCSSC-CCGGG-BCTTGGGGCTTCCEEECCSSC
T ss_pred ccChhh---cccccEEECCCCcccccCH------hHhcCCccccEEECCCCc-CCccC-cChhhccCCCCcCEEECCCCc
Confidence 345543 2789999999997765543 224568999999998764 32210 112224568899999999874
Q ss_pred CcceecCCcccccccccEEEeeccccccccccchhhccccccceeEEecCCCceeEeecCCCCccccccccccceeeccc
Q 038204 88 NLIVLLPSSSVSFRNLTDLQVWGCKELMKLVTSSTAKSLVRLRIMKVCGSRAMTQVVTSEKDGAEDEIVFSNLKALTLLD 167 (254)
Q Consensus 88 ~L~~l~p~~~~~~~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~C~~l~~i~~~~~~~~~~~~~~~~L~~L~l~~ 167 (254)
++.+ |.. .+++|++|+++++. ++.+.+ .....+++|+.|+++++. +..+.. .....+++|+.|++.+
T Consensus 183 -l~~l-~~~--~~~~L~~L~l~~n~-l~~~~~-~~~~~l~~L~~L~Ls~n~-l~~~~~------~~~~~l~~L~~L~L~~ 249 (330)
T 1xku_A 183 -ITTI-PQG--LPPSLTELHLDGNK-ITKVDA-ASLKGLNNLAKLGLSFNS-ISAVDN------GSLANTPHLRELHLNN 249 (330)
T ss_dssp -CCSC-CSS--CCTTCSEEECTTSC-CCEECT-GGGTTCTTCCEEECCSSC-CCEECT------TTGGGSTTCCEEECCS
T ss_pred -cccC-Ccc--ccccCCEEECCCCc-CCccCH-HHhcCCCCCCEEECCCCc-CceeCh------hhccCCCCCCEEECCC
Confidence 6666 432 34899999999885 555533 346788999999999885 444432 1344678999999998
Q ss_pred ccccceecCCCccccCCCcCeEEEeCCCCCcccCCCC
Q 038204 168 LDSLTSFCSGNYTFKFPSLRDLEVIGCPKMKIFTTGE 204 (254)
Q Consensus 168 c~~L~~~~~~~~~~~~~sL~~L~i~~Cp~L~~lp~~~ 204 (254)
+ +++.++.. ...+++|++|++++++ ++.++...
T Consensus 250 N-~l~~lp~~--l~~l~~L~~L~l~~N~-i~~~~~~~ 282 (330)
T 1xku_A 250 N-KLVKVPGG--LADHKYIQVVYLHNNN-ISAIGSND 282 (330)
T ss_dssp S-CCSSCCTT--TTTCSSCCEEECCSSC-CCCCCTTS
T ss_pred C-cCccCChh--hccCCCcCEEECCCCc-CCccChhh
Confidence 7 67777654 3567899999999884 77776553
No 60
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.06 E-value=6.6e-10 Score=106.35 Aligned_cols=168 Identities=13% Similarity=0.206 Sum_probs=100.1
Q ss_pred echHHHhhCCCCcEEEEecccceE------------------ecCCCCccccccC--CCCcccEEeccCCcccccccccC
Q 038204 9 FPLGLLEKFRNLEILYLSRTSYTE------------------ILSNEGHSEKHVG--KFSQVKHLQPYKLNDLKQLWKQG 68 (254)
Q Consensus 9 ~P~~~~~~l~~L~~L~l~~c~l~~------------------l~~~~~~~~~~~~--~~~~L~~L~L~~~~~L~~l~~~~ 68 (254)
+|.. +.++++|+.|+|++|.+.. ++. .++ .+++|++|+|.++.-...++
T Consensus 440 IP~~-l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~-------~l~f~~L~~L~~L~Ls~N~l~~~iP--- 508 (876)
T 4ecn_A 440 ISKA-IQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENE-------ELSWSNLKDLTDVELYNCPNMTQLP--- 508 (876)
T ss_dssp ECGG-GGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTS-------CCCGGGCTTCCEEEEESCTTCCSCC---
T ss_pred hhHH-HhcCCCCCEEECcCCcCCCCcccccccccccccccccCCh-------hhhhccCCCCCEEECcCCCCCccCh---
Confidence 7876 5689999999999997765 333 345 68889999998875444432
Q ss_pred CccccCCCCccEEEEecCCCcce-ecCCcccc-------cccccEEEeeccccccccccchhhccccccceeEEecCCCc
Q 038204 69 SKLDFIFTNLEILRVYCCQNLIV-LLPSSSVS-------FRNLTDLQVWGCKELMKLVTSSTAKSLVRLRIMKVCGSRAM 140 (254)
Q Consensus 69 ~~~~~~~~~L~~L~l~~C~~L~~-l~p~~~~~-------~~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~C~~l 140 (254)
.....+++|+.|+++++..+.. ..|..+.. +++|+.|++++|. ++.++.......+++|+.|+++++. +
T Consensus 509 -~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~-L~~ip~~~~l~~L~~L~~L~Ls~N~-l 585 (876)
T 4ecn_A 509 -DFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNN-LEEFPASASLQKMVKLGLLDCVHNK-V 585 (876)
T ss_dssp -GGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSC-CCBCCCHHHHTTCTTCCEEECTTSC-C
T ss_pred -HHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCc-CCccCChhhhhcCCCCCEEECCCCC-c
Confidence 2245678888888888764553 11332333 3478888887774 4444321245677778888877775 3
Q ss_pred eeEeecCCCCccccccccccceeecccccccceecCCCccccCCC-cCeEEEeCCCCCcccCC
Q 038204 141 TQVVTSEKDGAEDEIVFSNLKALTLLDLDSLTSFCSGNYTFKFPS-LRDLEVIGCPKMKIFTT 202 (254)
Q Consensus 141 ~~i~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~~s-L~~L~i~~Cp~L~~lp~ 202 (254)
..++ ....+++|+.|++.++ +++.++.. ...+++ |+.|++++|. ++.+|.
T Consensus 586 ~~lp--------~~~~L~~L~~L~Ls~N-~l~~lp~~--l~~l~~~L~~L~Ls~N~-L~~lp~ 636 (876)
T 4ecn_A 586 RHLE--------AFGTNVKLTDLKLDYN-QIEEIPED--FCAFTDQVEGLGFSHNK-LKYIPN 636 (876)
T ss_dssp CBCC--------CCCTTSEESEEECCSS-CCSCCCTT--SCEECTTCCEEECCSSC-CCSCCS
T ss_pred ccch--------hhcCCCcceEEECcCC-ccccchHH--HhhccccCCEEECcCCC-CCcCch
Confidence 3332 1223455555555554 23344332 133444 5555555553 444443
No 61
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.05 E-value=5.1e-10 Score=94.77 Aligned_cols=175 Identities=14% Similarity=0.029 Sum_probs=107.6
Q ss_pred hCCCCcEEEEecccceEecCCCCcccccc--CCCCcccEEeccCCcccccccccCCccc--cCCCCccEEEEecCCCcce
Q 038204 16 KFRNLEILYLSRTSYTEILSNEGHSEKHV--GKFSQVKHLQPYKLNDLKQLWKQGSKLD--FIFTNLEILRVYCCQNLIV 91 (254)
Q Consensus 16 ~l~~L~~L~l~~c~l~~l~~~~~~~~~~~--~~~~~L~~L~L~~~~~L~~l~~~~~~~~--~~~~~L~~L~l~~C~~L~~ 91 (254)
.+++|++|++++|.+....+. .+ +.+++|++|++++. .++.+. ...... ..+++|++|+++++. +..
T Consensus 93 ~l~~L~~L~L~~n~l~~~~~~------~~~~~~l~~L~~L~Ls~N-~l~~~~-~~~~~l~~~~~~~L~~L~L~~N~-l~~ 163 (312)
T 1wwl_A 93 GISGLQELTLENLEVTGTAPP------PLLEATGPDLNILNLRNV-SWATRD-AWLAELQQWLKPGLKVLSIAQAH-SLN 163 (312)
T ss_dssp TTSCCCEEEEEEEBCBSCCCC------CSSSCCSCCCSEEEEESC-BCSSSS-SHHHHHHTTCCTTCCEEEEESCS-CCC
T ss_pred CcCCccEEEccCCcccchhHH------HHHHhcCCCccEEEccCC-CCcchh-HHHHHHHHhhcCCCcEEEeeCCC-Ccc
Confidence 589999999999977643221 12 56899999999875 344431 111111 113899999999874 666
Q ss_pred ecCCcccccccccEEEeeccccccccccchh--hccccccceeEEecCCCceeEeecCCCCccccccccccceeeccccc
Q 038204 92 LLPSSSVSFRNLTDLQVWGCKELMKLVTSST--AKSLVRLRIMKVCGSRAMTQVVTSEKDGAEDEIVFSNLKALTLLDLD 169 (254)
Q Consensus 92 l~p~~~~~~~~L~~L~i~~C~~L~~l~~~~~--~~~l~~L~~L~i~~C~~l~~i~~~~~~~~~~~~~~~~L~~L~l~~c~ 169 (254)
+.|..+..+++|++|+++++.-....+.... ...+++|++|++++|. +..+.... ......+++|+.|++.++
T Consensus 164 ~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~---~~~~~~l~~L~~L~Ls~N- 238 (312)
T 1wwl_A 164 FSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAG-METPSGVC---SALAAARVQLQGLDLSHN- 238 (312)
T ss_dssp CCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSC-CCCHHHHH---HHHHHTTCCCSEEECTTS-
T ss_pred chHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCc-CcchHHHH---HHHHhcCCCCCEEECCCC-
Confidence 6556677899999999998864333211112 2678889999998885 43211100 001123578888888776
Q ss_pred ccceecCCCccccCCCcCeEEEeCCCCCcccCCCCC
Q 038204 170 SLTSFCSGNYTFKFPSLRDLEVIGCPKMKIFTTGEL 205 (254)
Q Consensus 170 ~L~~~~~~~~~~~~~sL~~L~i~~Cp~L~~lp~~~~ 205 (254)
+++..........+++|++|+++++ +++.+|....
T Consensus 239 ~l~~~~~~~~~~~l~~L~~L~Ls~N-~l~~ip~~~~ 273 (312)
T 1wwl_A 239 SLRDAAGAPSCDWPSQLNSLNLSFT-GLKQVPKGLP 273 (312)
T ss_dssp CCCSSCCCSCCCCCTTCCEEECTTS-CCSSCCSSCC
T ss_pred cCCcccchhhhhhcCCCCEEECCCC-ccChhhhhcc
Confidence 4554332111234577888888777 3666766443
No 62
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.05 E-value=8.9e-10 Score=104.36 Aligned_cols=143 Identities=13% Similarity=-0.048 Sum_probs=83.4
Q ss_pred CCCCcccEEeccCCcccccccccCCccccCCCCccEEEEecCCCcceecCCcccccccccEEEeeccccccccccchhhc
Q 038204 45 GKFSQVKHLQPYKLNDLKQLWKQGSKLDFIFTNLEILRVYCCQNLIVLLPSSSVSFRNLTDLQVWGCKELMKLVTSSTAK 124 (254)
Q Consensus 45 ~~~~~L~~L~L~~~~~L~~l~~~~~~~~~~~~~L~~L~l~~C~~L~~l~p~~~~~~~~L~~L~i~~C~~L~~l~~~~~~~ 124 (254)
+.+++|++|++.++. +... .+.....+++|++|++++|.--..+ |..+..+++|+.|++++|.-...++ ....
T Consensus 415 ~~l~~L~~L~Ls~N~-l~~~---~p~~l~~l~~L~~L~L~~n~l~~~~-p~~~~~l~~L~~L~L~~N~l~~~~p--~~l~ 487 (768)
T 3rgz_A 415 SNCSELVSLHLSFNY-LSGT---IPSSLGSLSKLRDLKLWLNMLEGEI-PQELMYVKTLETLILDFNDLTGEIP--SGLS 487 (768)
T ss_dssp GGCTTCCEEECCSSE-EESC---CCGGGGGCTTCCEEECCSSCCCSCC-CGGGGGCTTCCEEECCSSCCCSCCC--GGGG
T ss_pred hcCCCCCEEECcCCc-ccCc---ccHHHhcCCCCCEEECCCCcccCcC-CHHHcCCCCceEEEecCCcccCcCC--HHHh
Confidence 345566666665542 2211 1112345666777777766433233 4446667777777777764332222 3456
Q ss_pred cccccceeEEecCCCceeEeecCCCCccccccccccceeecccccccceecCCCccccCCCcCeEEEeCCCCCcccCCC
Q 038204 125 SLVRLRIMKVCGSRAMTQVVTSEKDGAEDEIVFSNLKALTLLDLDSLTSFCSGNYTFKFPSLRDLEVIGCPKMKIFTTG 203 (254)
Q Consensus 125 ~l~~L~~L~i~~C~~l~~i~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~~sL~~L~i~~Cp~L~~lp~~ 203 (254)
.+++|+.|++++|.-...++. ....+++|+.|++.++.--..++.. ...+++|+.|++++|+-...+|..
T Consensus 488 ~l~~L~~L~L~~N~l~~~~p~-------~~~~l~~L~~L~L~~N~l~~~~p~~--l~~l~~L~~L~Ls~N~l~g~ip~~ 557 (768)
T 3rgz_A 488 NCTNLNWISLSNNRLTGEIPK-------WIGRLENLAILKLSNNSFSGNIPAE--LGDCRSLIWLDLNTNLFNGTIPAA 557 (768)
T ss_dssp GCTTCCEEECCSSCCCSCCCG-------GGGGCTTCCEEECCSSCCEEECCGG--GGGCTTCCEEECCSSEEESBCCGG
T ss_pred cCCCCCEEEccCCccCCcCCh-------HHhcCCCCCEEECCCCcccCcCCHH--HcCCCCCCEEECCCCccCCcCChH
Confidence 677777777777753222222 4456788888888887433344442 356788999999888755566654
No 63
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.04 E-value=5.7e-10 Score=88.14 Aligned_cols=130 Identities=12% Similarity=0.084 Sum_probs=97.4
Q ss_pred HhhCCCCcEEEEecccceEecCCCCccccccCCCCcccEEeccCCcccccccccCCccccCCCCccEEEEecCCCcceec
Q 038204 14 LEKFRNLEILYLSRTSYTEILSNEGHSEKHVGKFSQVKHLQPYKLNDLKQLWKQGSKLDFIFTNLEILRVYCCQNLIVLL 93 (254)
Q Consensus 14 ~~~l~~L~~L~l~~c~l~~l~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~l~~~~~~~~~~~~~L~~L~l~~C~~L~~l~ 93 (254)
+..+++|++|++++|.++.+.. ++.+++|++|++.++ .++.. .......+++|++|++++|. ++...
T Consensus 62 l~~l~~L~~L~l~~n~~~~~~~--------l~~l~~L~~L~l~~n-~l~~~---~~~~l~~l~~L~~L~Ls~n~-i~~~~ 128 (197)
T 4ezg_A 62 IEYAHNIKDLTINNIHATNYNP--------ISGLSNLERLRIMGK-DVTSD---KIPNLSGLTSLTLLDISHSA-HDDSI 128 (197)
T ss_dssp GGGCTTCSEEEEESCCCSCCGG--------GTTCTTCCEEEEECT-TCBGG---GSCCCTTCTTCCEEECCSSB-CBGGG
T ss_pred HhcCCCCCEEEccCCCCCcchh--------hhcCCCCCEEEeECC-ccCcc---cChhhcCCCCCCEEEecCCc-cCcHh
Confidence 5689999999999996654432 567999999999885 44432 12235678999999999974 44322
Q ss_pred CCcccccccccEEEeeccccccccccchhhccccccceeEEecCCCceeEeecCCCCccccccccccceeecccc
Q 038204 94 PSSSVSFRNLTDLQVWGCKELMKLVTSSTAKSLVRLRIMKVCGSRAMTQVVTSEKDGAEDEIVFSNLKALTLLDL 168 (254)
Q Consensus 94 p~~~~~~~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~C~~l~~i~~~~~~~~~~~~~~~~L~~L~l~~c 168 (254)
+..+..+++|++|++++|..++.++ ....+++|+.|++++|. +..+. ....+++|+.|++.+.
T Consensus 129 ~~~l~~l~~L~~L~L~~n~~i~~~~---~l~~l~~L~~L~l~~n~-i~~~~--------~l~~l~~L~~L~l~~N 191 (197)
T 4ezg_A 129 LTKINTLPKVNSIDLSYNGAITDIM---PLKTLPELKSLNIQFDG-VHDYR--------GIEDFPKLNQLYAFSQ 191 (197)
T ss_dssp HHHHTTCSSCCEEECCSCTBCCCCG---GGGGCSSCCEEECTTBC-CCCCT--------TGGGCSSCCEEEECBC
T ss_pred HHHHhhCCCCCEEEccCCCCccccH---hhcCCCCCCEEECCCCC-CcChH--------HhccCCCCCEEEeeCc
Confidence 4446789999999999998777773 46789999999999985 43321 3446888999998865
No 64
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.04 E-value=1e-09 Score=103.90 Aligned_cols=134 Identities=13% Similarity=-0.001 Sum_probs=65.0
Q ss_pred CCCccEEEEecCCCcceecCCcccccccccEEEeeccccccccccchhhccccccceeEEecCCCceeEeecC-------
Q 038204 75 FTNLEILRVYCCQNLIVLLPSSSVSFRNLTDLQVWGCKELMKLVTSSTAKSLVRLRIMKVCGSRAMTQVVTSE------- 147 (254)
Q Consensus 75 ~~~L~~L~l~~C~~L~~l~p~~~~~~~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~C~~l~~i~~~~------- 147 (254)
+++|++|++.+|. ++...|..+..+++|+.|++++|. ++...+ .....+++|+.|++++|.-...++..-
T Consensus 393 ~~~L~~L~L~~n~-l~~~~p~~l~~l~~L~~L~Ls~N~-l~~~~p-~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~ 469 (768)
T 3rgz_A 393 KNTLQELYLQNNG-FTGKIPPTLSNCSELVSLHLSFNY-LSGTIP-SSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLE 469 (768)
T ss_dssp TCCCCEEECCSSE-EEEECCGGGGGCTTCCEEECCSSE-EESCCC-GGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCC
T ss_pred cCCccEEECCCCc-cccccCHHHhcCCCCCEEECcCCc-ccCccc-HHHhcCCCCCEEECCCCcccCcCCHHHcCCCCce
Confidence 4456666665553 222224445556666666666553 221111 233445555555555553211111100
Q ss_pred ----------CCCccccccccccceeecccccccceecCCCccccCCCcCeEEEeCCCCCcccCCCCCCCCC--eEEE
Q 038204 148 ----------KDGAEDEIVFSNLKALTLLDLDSLTSFCSGNYTFKFPSLRDLEVIGCPKMKIFTTGELCTPP--RVNV 213 (254)
Q Consensus 148 ----------~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~~sL~~L~i~~Cp~L~~lp~~~~~~~~--~~~i 213 (254)
+..+.....+++|+.|++.++.--..++.. ...+++|++|++++|.-...+|......+. .+.+
T Consensus 470 ~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~--~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L 545 (768)
T 3rgz_A 470 TLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKW--IGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDL 545 (768)
T ss_dssp EEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGG--GGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEEC
T ss_pred EEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChH--HhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEEC
Confidence 000113345667777777776422233332 245778888888888655566655444443 4444
No 65
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.04 E-value=2.5e-09 Score=95.43 Aligned_cols=20 Identities=35% Similarity=0.512 Sum_probs=11.6
Q ss_pred HhhCCCCcEEEEecccceEe
Q 038204 14 LEKFRNLEILYLSRTSYTEI 33 (254)
Q Consensus 14 ~~~l~~L~~L~l~~c~l~~l 33 (254)
+..+++|++|++++|.+..+
T Consensus 195 l~~l~~L~~L~l~~n~l~~~ 214 (466)
T 1o6v_A 195 LAKLTNLESLIATNNQISDI 214 (466)
T ss_dssp GGGCTTCSEEECCSSCCCCC
T ss_pred hccCCCCCEEEecCCccccc
Confidence 34566666666666644433
No 66
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.04 E-value=4.7e-10 Score=103.47 Aligned_cols=152 Identities=13% Similarity=0.145 Sum_probs=116.4
Q ss_pred hhCCCCcEEEEecccceEecCCCCccccccCCCCcccEEeccCCcccccccccCCccccCCCCccEEEEecCCCcceecC
Q 038204 15 EKFRNLEILYLSRTSYTEILSNEGHSEKHVGKFSQVKHLQPYKLNDLKQLWKQGSKLDFIFTNLEILRVYCCQNLIVLLP 94 (254)
Q Consensus 15 ~~l~~L~~L~l~~c~l~~l~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~l~~~~~~~~~~~~~L~~L~l~~C~~L~~l~p 94 (254)
..+++|+.|++++|.+..+.. ++.+++|+.|+|+++ .+..+.. ...+++|+.|.+++| .+..+ |
T Consensus 40 ~~L~~L~~L~l~~n~i~~l~~--------l~~l~~L~~L~Ls~N-~l~~~~~-----l~~l~~L~~L~Ls~N-~l~~l-~ 103 (605)
T 1m9s_A 40 NELNSIDQIIANNSDIKSVQG--------IQYLPNVTKLFLNGN-KLTDIKP-----LTNLKNLGWLFLDEN-KIKDL-S 103 (605)
T ss_dssp HHHTTCCCCBCTTCCCCCCTT--------GGGCTTCCEEECTTS-CCCCCGG-----GGGCTTCCEEECCSS-CCCCC-T
T ss_pred hcCCCCCEEECcCCCCCCChH--------HccCCCCCEEEeeCC-CCCCChh-----hccCCCCCEEECcCC-CCCCC-h
Confidence 467899999999997776543 567999999999886 4554422 567899999999998 56665 4
Q ss_pred CcccccccccEEEeeccccccccccchhhccccccceeEEecCCCceeEeecCCCCccccccccccceeeccccccccee
Q 038204 95 SSSVSFRNLTDLQVWGCKELMKLVTSSTAKSLVRLRIMKVCGSRAMTQVVTSEKDGAEDEIVFSNLKALTLLDLDSLTSF 174 (254)
Q Consensus 95 ~~~~~~~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~C~~l~~i~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~ 174 (254)
. +..+++|+.|++++|. +..+ .....+++|+.|++++|. +..+ . ....+++|+.|++.++ .+..+
T Consensus 104 ~-l~~l~~L~~L~Ls~N~-l~~l---~~l~~l~~L~~L~Ls~N~-l~~l-~-------~l~~l~~L~~L~Ls~N-~l~~~ 168 (605)
T 1m9s_A 104 S-LKDLKKLKSLSLEHNG-ISDI---NGLVHLPQLESLYLGNNK-ITDI-T-------VLSRLTKLDTLSLEDN-QISDI 168 (605)
T ss_dssp T-STTCTTCCEEECTTSC-CCCC---GGGGGCTTCSEEECCSSC-CCCC-G-------GGGSCTTCSEEECCSS-CCCCC
T ss_pred h-hccCCCCCEEEecCCC-CCCC---ccccCCCccCEEECCCCc-cCCc-h-------hhcccCCCCEEECcCC-cCCCc
Confidence 4 7889999999999985 5554 346789999999999985 4433 1 4456899999999987 56665
Q ss_pred cCCCccccCCCcCeEEEeCCCCCcccC
Q 038204 175 CSGNYTFKFPSLRDLEVIGCPKMKIFT 201 (254)
Q Consensus 175 ~~~~~~~~~~sL~~L~i~~Cp~L~~lp 201 (254)
.. ...+++|+.|++++| +++.+|
T Consensus 169 ~~---l~~l~~L~~L~Ls~N-~i~~l~ 191 (605)
T 1m9s_A 169 VP---LAGLTKLQNLYLSKN-HISDLR 191 (605)
T ss_dssp GG---GTTCTTCCEEECCSS-CCCBCG
T ss_pred hh---hccCCCCCEEECcCC-CCCCCh
Confidence 44 357899999999988 355443
No 67
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.04 E-value=2e-09 Score=91.27 Aligned_cols=164 Identities=11% Similarity=0.051 Sum_probs=113.5
Q ss_pred HhhCCCCcEEEEecccceEecCCCCcc----------ccccCCCCcccEEeccCCcccccccccCCccccCCCCccEEEE
Q 038204 14 LEKFRNLEILYLSRTSYTEILSNEGHS----------EKHVGKFSQVKHLQPYKLNDLKQLWKQGSKLDFIFTNLEILRV 83 (254)
Q Consensus 14 ~~~l~~L~~L~l~~c~l~~l~~~~~~~----------~~~~~~~~~L~~L~L~~~~~L~~l~~~~~~~~~~~~~L~~L~l 83 (254)
+..+++|++|++++|.++.++...... ......+++|++|++.++ .++.+... ....+++|++|++
T Consensus 76 ~~~l~~L~~L~Ls~n~l~~l~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~N-~l~~~~~~---~~~~l~~L~~L~L 151 (317)
T 3o53_A 76 LESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNISRVSCSRGQGKKNIYLANN-KITMLRDL---DEGCRSRVQYLDL 151 (317)
T ss_dssp ETTCTTCCEEECCSSEEEEEEECTTCCEEECCSSCCSEEEECCCSSCEEEECCSS-CCCSGGGB---CTGGGSSEEEEEC
T ss_pred hhhcCCCCEEECcCCccccccCCCCcCEEECCCCccCCcCccccCCCCEEECCCC-CCCCccch---hhhccCCCCEEEC
Confidence 568899999999999777765321110 011234777888888765 34443221 2345789999999
Q ss_pred ecCCCcceecCCcc-cccccccEEEeeccccccccccchhhccccccceeEEecCCCceeEeecCCCCccccccccccce
Q 038204 84 YCCQNLIVLLPSSS-VSFRNLTDLQVWGCKELMKLVTSSTAKSLVRLRIMKVCGSRAMTQVVTSEKDGAEDEIVFSNLKA 162 (254)
Q Consensus 84 ~~C~~L~~l~p~~~-~~~~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~C~~l~~i~~~~~~~~~~~~~~~~L~~ 162 (254)
+++ .+..+.+..+ ..+++|++|++++|. ++.++. ...+++|++|+++++. +..++. ....+++|+.
T Consensus 152 s~N-~l~~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~---~~~l~~L~~L~Ls~N~-l~~l~~-------~~~~l~~L~~ 218 (317)
T 3o53_A 152 KLN-EIDTVNFAELAASSDTLEHLNLQYNF-IYDVKG---QVVFAKLKTLDLSSNK-LAFMGP-------EFQSAAGVTW 218 (317)
T ss_dssp TTS-CCCEEEGGGGGGGTTTCCEEECTTSC-CCEEEC---CCCCTTCCEEECCSSC-CCEECG-------GGGGGTTCSE
T ss_pred CCC-CCCcccHHHHhhccCcCCEEECCCCc-Cccccc---ccccccCCEEECCCCc-CCcchh-------hhcccCcccE
Confidence 987 4555544433 368999999999885 555532 2358899999999985 655543 3456789999
Q ss_pred eecccccccceecCCCccccCCCcCeEEEeCCCCC
Q 038204 163 LTLLDLDSLTSFCSGNYTFKFPSLRDLEVIGCPKM 197 (254)
Q Consensus 163 L~l~~c~~L~~~~~~~~~~~~~sL~~L~i~~Cp~L 197 (254)
|++.++ +++.++.. ...+++|+.|++++++-.
T Consensus 219 L~L~~N-~l~~l~~~--~~~l~~L~~L~l~~N~~~ 250 (317)
T 3o53_A 219 ISLRNN-KLVLIEKA--LRFSQNLEHFDLRGNGFH 250 (317)
T ss_dssp EECTTS-CCCEECTT--CCCCTTCCEEECTTCCCB
T ss_pred EECcCC-cccchhhH--hhcCCCCCEEEccCCCcc
Confidence 999987 78887764 356789999999988644
No 68
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.03 E-value=9.8e-10 Score=98.07 Aligned_cols=153 Identities=15% Similarity=0.168 Sum_probs=75.2
Q ss_pred HhhCCCCcEEEEecccceEecCCCCccccccCCCCcccEEeccCCcccccccc-----------------cCCccccCCC
Q 038204 14 LEKFRNLEILYLSRTSYTEILSNEGHSEKHVGKFSQVKHLQPYKLNDLKQLWK-----------------QGSKLDFIFT 76 (254)
Q Consensus 14 ~~~l~~L~~L~l~~c~l~~l~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~l~~-----------------~~~~~~~~~~ 76 (254)
+..+++|+.|++++|.++.+.. ++.+++|++|++.++. +..+.. ........++
T Consensus 217 ~~~l~~L~~L~l~~n~l~~~~~--------l~~l~~L~~L~l~~n~-l~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~ 287 (466)
T 1o6v_A 217 LGILTNLDELSLNGNQLKDIGT--------LASLTNLTDLDLANNQ-ISNLAPLSGLTKLTELKLGANQISNISPLAGLT 287 (466)
T ss_dssp GGGCTTCCEEECCSSCCCCCGG--------GGGCTTCSEEECCSSC-CCCCGGGTTCTTCSEEECCSSCCCCCGGGTTCT
T ss_pred ccccCCCCEEECCCCCcccchh--------hhcCCCCCEEECCCCc-cccchhhhcCCCCCEEECCCCccCccccccCCC
Confidence 3567788888888776554421 3345666666665542 222110 0000022344
Q ss_pred CccEEEEecCCCcceecCCcccccccccEEEeeccccccccccchhhccccccceeEEecCCCceeEeecCCCCcccccc
Q 038204 77 NLEILRVYCCQNLIVLLPSSSVSFRNLTDLQVWGCKELMKLVTSSTAKSLVRLRIMKVCGSRAMTQVVTSEKDGAEDEIV 156 (254)
Q Consensus 77 ~L~~L~l~~C~~L~~l~p~~~~~~~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~C~~l~~i~~~~~~~~~~~~~ 156 (254)
+|++|++++| +++.+ +. +..+++|+.|++++|. ++...+ ...+++|+.|++++|. +..+ .....
T Consensus 288 ~L~~L~L~~n-~l~~~-~~-~~~l~~L~~L~L~~n~-l~~~~~---~~~l~~L~~L~l~~n~-l~~~--------~~l~~ 351 (466)
T 1o6v_A 288 ALTNLELNEN-QLEDI-SP-ISNLKNLTYLTLYFNN-ISDISP---VSSLTKLQRLFFYNNK-VSDV--------SSLAN 351 (466)
T ss_dssp TCSEEECCSS-CCSCC-GG-GGGCTTCSEEECCSSC-CSCCGG---GGGCTTCCEEECCSSC-CCCC--------GGGTT
T ss_pred ccCeEEcCCC-cccCc-hh-hcCCCCCCEEECcCCc-CCCchh---hccCccCCEeECCCCc-cCCc--------hhhcc
Confidence 4555555444 23333 11 3445555555555552 333321 3455555555555553 3222 12334
Q ss_pred ccccceeecccccccceecCCCccccCCCcCeEEEeCCC
Q 038204 157 FSNLKALTLLDLDSLTSFCSGNYTFKFPSLRDLEVIGCP 195 (254)
Q Consensus 157 ~~~L~~L~l~~c~~L~~~~~~~~~~~~~sL~~L~i~~Cp 195 (254)
+++|+.|++.++ ++.++.. ...+++|+.|++++|+
T Consensus 352 l~~L~~L~l~~n-~l~~~~~---~~~l~~L~~L~l~~n~ 386 (466)
T 1o6v_A 352 LTNINWLSAGHN-QISDLTP---LANLTRITQLGLNDQA 386 (466)
T ss_dssp CTTCCEEECCSS-CCCBCGG---GTTCTTCCEEECCCEE
T ss_pred CCCCCEEeCCCC-ccCccch---hhcCCCCCEEeccCCc
Confidence 566777777666 3444332 2456777777777764
No 69
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.02 E-value=1.2e-09 Score=89.56 Aligned_cols=164 Identities=18% Similarity=0.183 Sum_probs=120.5
Q ss_pred ceechHHHhhCCCCcEEEEecccceEecCCCCccccccCCCCcccEEeccCCcccccccccCCccccCCCCccEEEEecC
Q 038204 7 ACFPLGLLEKFRNLEILYLSRTSYTEILSNEGHSEKHVGKFSQVKHLQPYKLNDLKQLWKQGSKLDFIFTNLEILRVYCC 86 (254)
Q Consensus 7 ~~~P~~~~~~l~~L~~L~l~~c~l~~l~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~l~~~~~~~~~~~~~L~~L~l~~C 86 (254)
..+|..+. ++|+.|+++++++..+.. ..++.+++|++|+++++ .++.+.. .....+++|++|+++++
T Consensus 27 ~~~p~~~~---~~l~~L~L~~n~l~~~~~------~~~~~l~~L~~L~L~~n-~l~~~~~---~~~~~l~~L~~L~L~~n 93 (251)
T 3m19_A 27 DSVPSGIP---ADTEKLDLQSTGLATLSD------ATFRGLTKLTWLNLDYN-QLQTLSA---GVFDDLTELGTLGLANN 93 (251)
T ss_dssp SSCCSCCC---TTCCEEECTTSCCCCCCT------TTTTTCTTCCEEECTTS-CCCCCCT---TTTTTCTTCCEEECTTS
T ss_pred cccCCCCC---CCCCEEEccCCCcCccCH------hHhcCcccCCEEECCCC-cCCccCH---hHhccCCcCCEEECCCC
Confidence 34555432 689999999998776654 23557899999999885 5555422 22456899999999986
Q ss_pred CCcceecCCcccccccccEEEeeccccccccccchhhccccccceeEEecCCCceeEeecCCCCccccccccccceeecc
Q 038204 87 QNLIVLLPSSSVSFRNLTDLQVWGCKELMKLVTSSTAKSLVRLRIMKVCGSRAMTQVVTSEKDGAEDEIVFSNLKALTLL 166 (254)
Q Consensus 87 ~~L~~l~p~~~~~~~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~C~~l~~i~~~~~~~~~~~~~~~~L~~L~l~ 166 (254)
+++.+.+..+..+++|++|+++++ +++.++. .....+++|+.|+++++. +..++. .....+++|+.|++.
T Consensus 94 -~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~-~~~~~l~~L~~L~Ls~N~-l~~~~~------~~~~~l~~L~~L~L~ 163 (251)
T 3m19_A 94 -QLASLPLGVFDHLTQLDKLYLGGN-QLKSLPS-GVFDRLTKLKELRLNTNQ-LQSIPA------GAFDKLTNLQTLSLS 163 (251)
T ss_dssp -CCCCCCTTTTTTCTTCCEEECCSS-CCCCCCT-TTTTTCTTCCEEECCSSC-CCCCCT------TTTTTCTTCCEEECC
T ss_pred -cccccChhHhcccCCCCEEEcCCC-cCCCcCh-hHhccCCcccEEECcCCc-CCccCH------HHcCcCcCCCEEECC
Confidence 566775555678999999999988 5666643 345789999999999984 554432 133457899999999
Q ss_pred cccccceecCCCccccCCCcCeEEEeCCC
Q 038204 167 DLDSLTSFCSGNYTFKFPSLRDLEVIGCP 195 (254)
Q Consensus 167 ~c~~L~~~~~~~~~~~~~sL~~L~i~~Cp 195 (254)
++ +++.++... ...+++|+.|++.+++
T Consensus 164 ~N-~l~~~~~~~-~~~l~~L~~L~l~~N~ 190 (251)
T 3m19_A 164 TN-QLQSVPHGA-FDRLGKLQTITLFGNQ 190 (251)
T ss_dssp SS-CCSCCCTTT-TTTCTTCCEEECCSCC
T ss_pred CC-cCCccCHHH-HhCCCCCCEEEeeCCc
Confidence 87 677776542 3467899999999876
No 70
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.02 E-value=3.5e-09 Score=96.68 Aligned_cols=186 Identities=13% Similarity=0.056 Sum_probs=123.8
Q ss_pred CCCcEEEEecccceEecCCCCccccccCCCCcccEEeccCCcccccccccCCccccCCCCccEEEEecCCCcceec--CC
Q 038204 18 RNLEILYLSRTSYTEILSNEGHSEKHVGKFSQVKHLQPYKLNDLKQLWKQGSKLDFIFTNLEILRVYCCQNLIVLL--PS 95 (254)
Q Consensus 18 ~~L~~L~l~~c~l~~l~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~l~~~~~~~~~~~~~L~~L~l~~C~~L~~l~--p~ 95 (254)
.+|++|++++|.+..+.. .+.+++|++|++.++. +... .+.....+++|++|+++++ +++.+. |.
T Consensus 331 ~~L~~L~l~~n~~~~~~~--------~~~l~~L~~L~l~~n~-l~~~---~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~ 397 (562)
T 3a79_B 331 MNIKMLSISDTPFIHMVC--------PPSPSSFTFLNFTQNV-FTDS---VFQGCSTLKRLQTLILQRN-GLKNFFKVAL 397 (562)
T ss_dssp CCCSEEEEESSCCCCCCC--------CSSCCCCCEEECCSSC-CCTT---TTTTCCSCSSCCEEECCSS-CCCBTTHHHH
T ss_pred CcceEEEccCCCcccccC--------ccCCCCceEEECCCCc-cccc---hhhhhcccCCCCEEECCCC-CcCCcccchh
Confidence 567777777775443221 1458899999998863 3332 1222466889999999986 555542 23
Q ss_pred cccccccccEEEeeccccccc-cccchhhccccccceeEEecCCCceeEeecCCCCccccccc-cccceeecccccccce
Q 038204 96 SSVSFRNLTDLQVWGCKELMK-LVTSSTAKSLVRLRIMKVCGSRAMTQVVTSEKDGAEDEIVF-SNLKALTLLDLDSLTS 173 (254)
Q Consensus 96 ~~~~~~~L~~L~i~~C~~L~~-l~~~~~~~~l~~L~~L~i~~C~~l~~i~~~~~~~~~~~~~~-~~L~~L~l~~c~~L~~ 173 (254)
.+..+++|+.|+++++. ++. ++. .....+++|+.|++++|.--.. ....+ ++|+.|++.++ +++.
T Consensus 398 ~~~~l~~L~~L~l~~N~-l~~~~~~-~~~~~l~~L~~L~l~~n~l~~~----------~~~~l~~~L~~L~L~~N-~l~~ 464 (562)
T 3a79_B 398 MTKNMSSLETLDVSLNS-LNSHAYD-RTCAWAESILVLNLSSNMLTGS----------VFRCLPPKVKVLDLHNN-RIMS 464 (562)
T ss_dssp TTTTCTTCCEEECTTSC-CBSCCSS-CCCCCCTTCCEEECCSSCCCGG----------GGSSCCTTCSEEECCSS-CCCC
T ss_pred hhcCCCCCCEEECCCCc-CCCccCh-hhhcCcccCCEEECCCCCCCcc----------hhhhhcCcCCEEECCCC-cCcc
Confidence 35678999999999885 444 432 3456789999999999862111 11123 69999999988 8888
Q ss_pred ecCCCccccCCCcCeEEEeCCCCCcccCCC-CCCCCC--eEEEeeCCCCCcccccccHHHHHHHHH
Q 038204 174 FCSGNYTFKFPSLRDLEVIGCPKMKIFTTG-ELCTPP--RVNVWYGEGDGECRWANDLNVTIQELH 236 (254)
Q Consensus 174 ~~~~~~~~~~~sL~~L~i~~Cp~L~~lp~~-~~~~~~--~~~i~~~~~~~~~~~~~d~~~~i~~~~ 236 (254)
++.+. ..+++|++|+++++ +++.+|.. ....+. .+.+ .+..|.+++++...++.|.
T Consensus 465 ip~~~--~~l~~L~~L~L~~N-~l~~l~~~~~~~l~~L~~L~l----~~N~~~c~c~~~~~~~~~~ 523 (562)
T 3a79_B 465 IPKDV--THLQALQELNVASN-QLKSVPDGVFDRLTSLQYIWL----HDNPWDCTCPGIRYLSEWI 523 (562)
T ss_dssp CCTTT--TSSCCCSEEECCSS-CCCCCCTTSTTTCTTCCCEEC----CSCCBCCCHHHHHHHHHHH
T ss_pred cChhh--cCCCCCCEEECCCC-CCCCCCHHHHhcCCCCCEEEe----cCCCcCCCcchHHHHHHHH
Confidence 87754 48899999999998 58889886 333343 5565 3446666665444444443
No 71
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.02 E-value=6.8e-10 Score=100.74 Aligned_cols=109 Identities=17% Similarity=0.113 Sum_probs=44.9
Q ss_pred CCCcEEEEecccceEecCCCCccccccCCCCcccEEeccCCcccccccccCCccccCCCCccEEEEecCCCcceecCCcc
Q 038204 18 RNLEILYLSRTSYTEILSNEGHSEKHVGKFSQVKHLQPYKLNDLKQLWKQGSKLDFIFTNLEILRVYCCQNLIVLLPSSS 97 (254)
Q Consensus 18 ~~L~~L~l~~c~l~~l~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~l~~~~~~~~~~~~~L~~L~l~~C~~L~~l~p~~~ 97 (254)
++|++|++++|.++.+.+. .++.+++|++|+++++ .++.+... ....+++|++|+++++ .+..+.|..+
T Consensus 26 ~~L~~L~Ls~n~l~~~~~~------~~~~l~~L~~L~Ls~n-~i~~~~~~---~~~~l~~L~~L~Ls~n-~l~~~~~~~~ 94 (549)
T 2z81_A 26 AAMKSLDLSFNKITYIGHG------DLRACANLQVLILKSS-RINTIEGD---AFYSLGSLEHLDLSDN-HLSSLSSSWF 94 (549)
T ss_dssp TTCCEEECCSSCCCEECSS------TTSSCTTCCEEECTTS-CCCEECTT---TTTTCTTCCEEECTTS-CCCSCCHHHH
T ss_pred CCccEEECcCCccCccChh------hhhcCCcccEEECCCC-CcCccChh---hccccccCCEEECCCC-ccCccCHHHh
Confidence 4556666666655544321 1334555555555443 23332111 1233445555555444 2333322223
Q ss_pred cccccccEEEeeccccccccccchhhccccccceeEEecCC
Q 038204 98 VSFRNLTDLQVWGCKELMKLVTSSTAKSLVRLRIMKVCGSR 138 (254)
Q Consensus 98 ~~~~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~C~ 138 (254)
..+++|++|+++++. ++.+........+++|++|++++|.
T Consensus 95 ~~l~~L~~L~Ls~n~-l~~~~~~~~~~~l~~L~~L~L~~n~ 134 (549)
T 2z81_A 95 GPLSSLKYLNLMGNP-YQTLGVTSLFPNLTNLQTLRIGNVE 134 (549)
T ss_dssp TTCTTCCEEECTTCC-CSSSCSSCSCTTCTTCCEEEEEESS
T ss_pred ccCCCCcEEECCCCc-ccccchhhhhhccCCccEEECCCCc
Confidence 344444444444442 2221111223344444444444443
No 72
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.00 E-value=4.2e-09 Score=89.71 Aligned_cols=168 Identities=14% Similarity=0.120 Sum_probs=104.6
Q ss_pred eechHHHhhCCCCcEEEEecccceEecCCCCccccccCCCCcccEEeccCCcccccccccCCccccCCCCccEEEEecCC
Q 038204 8 CFPLGLLEKFRNLEILYLSRTSYTEILSNEGHSEKHVGKFSQVKHLQPYKLNDLKQLWKQGSKLDFIFTNLEILRVYCCQ 87 (254)
Q Consensus 8 ~~P~~~~~~l~~L~~L~l~~c~l~~l~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~l~~~~~~~~~~~~~L~~L~l~~C~ 87 (254)
.+++..+..+++|++|++++|.+++++.. + +++|++|++.++ .++.+.. .....+++|++|++.++.
T Consensus 92 ~~~~~~~~~l~~L~~L~L~~n~l~~l~~~-------~--~~~L~~L~l~~n-~i~~~~~---~~~~~l~~L~~L~l~~n~ 158 (332)
T 2ft3_A 92 KIHEKAFSPLRKLQKLYISKNHLVEIPPN-------L--PSSLVELRIHDN-RIRKVPK---GVFSGLRNMNCIEMGGNP 158 (332)
T ss_dssp EECGGGSTTCTTCCEEECCSSCCCSCCSS-------C--CTTCCEEECCSS-CCCCCCS---GGGSSCSSCCEEECCSCC
T ss_pred ccCHhHhhCcCCCCEEECCCCcCCccCcc-------c--cccCCEEECCCC-ccCccCH---hHhCCCccCCEEECCCCc
Confidence 34444457899999999999977766541 1 356666666554 2333211 112345556666555542
Q ss_pred C------------------------cceecCCcccccccccEEEeeccccccccccchhhccccccceeEEecCCCceeE
Q 038204 88 N------------------------LIVLLPSSSVSFRNLTDLQVWGCKELMKLVTSSTAKSLVRLRIMKVCGSRAMTQV 143 (254)
Q Consensus 88 ~------------------------L~~l~p~~~~~~~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~C~~l~~i 143 (254)
- ++.+ |. ..+++|++|+++++ .++.+++ .....+++|+.|+++++. +..+
T Consensus 159 l~~~~~~~~~~~~l~L~~L~l~~n~l~~l-~~--~~~~~L~~L~l~~n-~i~~~~~-~~l~~l~~L~~L~L~~N~-l~~~ 232 (332)
T 2ft3_A 159 LENSGFEPGAFDGLKLNYLRISEAKLTGI-PK--DLPETLNELHLDHN-KIQAIEL-EDLLRYSKLYRLGLGHNQ-IRMI 232 (332)
T ss_dssp CBGGGSCTTSSCSCCCSCCBCCSSBCSSC-CS--SSCSSCSCCBCCSS-CCCCCCT-TSSTTCTTCSCCBCCSSC-CCCC
T ss_pred cccCCCCcccccCCccCEEECcCCCCCcc-Cc--cccCCCCEEECCCC-cCCccCH-HHhcCCCCCCEEECCCCc-CCcC
Confidence 1 2222 21 12357777777766 3444432 345678899999999885 4333
Q ss_pred eecCCCCccccccccccceeecccccccceecCCCccccCCCcCeEEEeCCCCCcccCCCC
Q 038204 144 VTSEKDGAEDEIVFSNLKALTLLDLDSLTSFCSGNYTFKFPSLRDLEVIGCPKMKIFTTGE 204 (254)
Q Consensus 144 ~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~~sL~~L~i~~Cp~L~~lp~~~ 204 (254)
.. .....+++|+.|++.++ +++.++.. ...+++|++|+++++ +++.++...
T Consensus 233 ~~------~~~~~l~~L~~L~L~~N-~l~~lp~~--l~~l~~L~~L~l~~N-~l~~~~~~~ 283 (332)
T 2ft3_A 233 EN------GSLSFLPTLRELHLDNN-KLSRVPAG--LPDLKLLQVVYLHTN-NITKVGVND 283 (332)
T ss_dssp CT------TGGGGCTTCCEEECCSS-CCCBCCTT--GGGCTTCCEEECCSS-CCCBCCTTS
T ss_pred Ch------hHhhCCCCCCEEECCCC-cCeecChh--hhcCccCCEEECCCC-CCCccChhH
Confidence 21 13456889999999987 77777764 367899999999987 477776543
No 73
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=98.99 E-value=2.9e-09 Score=95.79 Aligned_cols=164 Identities=11% Similarity=0.051 Sum_probs=116.1
Q ss_pred HhhCCCCcEEEEecccceEecCCCCcc----------ccccCCCCcccEEeccCCcccccccccCCccccCCCCccEEEE
Q 038204 14 LEKFRNLEILYLSRTSYTEILSNEGHS----------EKHVGKFSQVKHLQPYKLNDLKQLWKQGSKLDFIFTNLEILRV 83 (254)
Q Consensus 14 ~~~l~~L~~L~l~~c~l~~l~~~~~~~----------~~~~~~~~~L~~L~L~~~~~L~~l~~~~~~~~~~~~~L~~L~l 83 (254)
+..+++|++|++++|.+..++...... ......+++|+.|++.++ .+..+... ....+++|++|++
T Consensus 76 l~~l~~L~~L~Ls~N~l~~l~~~~~L~~L~L~~N~l~~~~~~~l~~L~~L~L~~N-~l~~~~~~---~~~~l~~L~~L~L 151 (487)
T 3oja_A 76 LESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNISRVSCSRGQGKKNIYLANN-KITMLRDL---DEGCRSRVQYLDL 151 (487)
T ss_dssp CTTCTTCCEEECCSSEEEEEEECTTCCEEECCSSCCCCEEECCCSSCEEEECCSS-CCCSGGGB---CGGGGSSEEEEEC
T ss_pred cccCCCCCEEEecCCcCCCCCCCCCcCEEECcCCcCCCCCccccCCCCEEECCCC-CCCCCCch---hhcCCCCCCEEEC
Confidence 568999999999999877765421110 001224778888888775 34443221 2355899999999
Q ss_pred ecCCCcceecCCccc-ccccccEEEeeccccccccccchhhccccccceeEEecCCCceeEeecCCCCccccccccccce
Q 038204 84 YCCQNLIVLLPSSSV-SFRNLTDLQVWGCKELMKLVTSSTAKSLVRLRIMKVCGSRAMTQVVTSEKDGAEDEIVFSNLKA 162 (254)
Q Consensus 84 ~~C~~L~~l~p~~~~-~~~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~C~~l~~i~~~~~~~~~~~~~~~~L~~ 162 (254)
+++ .+....|..+. .+++|+.|++++|. ++.++. ...+++|+.|+++++. +..++. ....+++|+.
T Consensus 152 s~N-~l~~~~~~~l~~~l~~L~~L~Ls~N~-l~~~~~---~~~l~~L~~L~Ls~N~-l~~~~~-------~~~~l~~L~~ 218 (487)
T 3oja_A 152 KLN-EIDTVNFAELAASSDTLEHLNLQYNF-IYDVKG---QVVFAKLKTLDLSSNK-LAFMGP-------EFQSAAGVTW 218 (487)
T ss_dssp TTS-CCCEEEGGGGGGGTTTCCEEECTTSC-CCEEEC---CCCCTTCCEEECCSSC-CCEECG-------GGGGGTTCSE
T ss_pred CCC-CCCCcChHHHhhhCCcccEEecCCCc-cccccc---cccCCCCCEEECCCCC-CCCCCH-------hHcCCCCccE
Confidence 987 55555455444 68999999999985 555532 3368999999999985 666554 3456899999
Q ss_pred eecccccccceecCCCccccCCCcCeEEEeCCCCC
Q 038204 163 LTLLDLDSLTSFCSGNYTFKFPSLRDLEVIGCPKM 197 (254)
Q Consensus 163 L~l~~c~~L~~~~~~~~~~~~~sL~~L~i~~Cp~L 197 (254)
|++.++ +++.++.. ...+++|+.|++++++-.
T Consensus 219 L~Ls~N-~l~~lp~~--l~~l~~L~~L~l~~N~l~ 250 (487)
T 3oja_A 219 ISLRNN-KLVLIEKA--LRFSQNLEHFDLRGNGFH 250 (487)
T ss_dssp EECTTS-CCCEECTT--CCCCTTCCEEECTTCCBC
T ss_pred EEecCC-cCcccchh--hccCCCCCEEEcCCCCCc
Confidence 999986 78887764 356789999999998754
No 74
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=98.99 E-value=3.4e-09 Score=94.59 Aligned_cols=99 Identities=21% Similarity=0.142 Sum_probs=57.6
Q ss_pred hhCCCCcEEEEecccceEecCCCCccccccCCCCcccEEeccCCcccccccccCCccccCCCCccEEEEecCCCcceecC
Q 038204 15 EKFRNLEILYLSRTSYTEILSNEGHSEKHVGKFSQVKHLQPYKLNDLKQLWKQGSKLDFIFTNLEILRVYCCQNLIVLLP 94 (254)
Q Consensus 15 ~~l~~L~~L~l~~c~l~~l~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~l~~~~~~~~~~~~~L~~L~l~~C~~L~~l~p 94 (254)
.++++|++|++++|.++.++. ++.+++|++|+++++ .++.+. ...+++|++|+++++. ++.+ +
T Consensus 39 ~~l~~L~~L~Ls~n~l~~~~~--------l~~l~~L~~L~Ls~n-~l~~~~------~~~l~~L~~L~Ls~N~-l~~~-~ 101 (457)
T 3bz5_A 39 EQLATLTSLDCHNSSITDMTG--------IEKLTGLTKLICTSN-NITTLD------LSQNTNLTYLACDSNK-LTNL-D 101 (457)
T ss_dssp HHHTTCCEEECCSSCCCCCTT--------GGGCTTCSEEECCSS-CCSCCC------CTTCTTCSEEECCSSC-CSCC-C
T ss_pred hHcCCCCEEEccCCCcccChh--------hcccCCCCEEEccCC-cCCeEc------cccCCCCCEEECcCCC-Ccee-e
Confidence 457788888888876665432 445677777777665 344431 3446666777766653 4444 2
Q ss_pred CcccccccccEEEeeccccccccccchhhccccccceeEEecC
Q 038204 95 SSSVSFRNLTDLQVWGCKELMKLVTSSTAKSLVRLRIMKVCGS 137 (254)
Q Consensus 95 ~~~~~~~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~C 137 (254)
+..+++|++|+++++ +++.++ ...+++|+.|+++++
T Consensus 102 --~~~l~~L~~L~L~~N-~l~~l~----~~~l~~L~~L~l~~N 137 (457)
T 3bz5_A 102 --VTPLTKLTYLNCDTN-KLTKLD----VSQNPLLTYLNCARN 137 (457)
T ss_dssp --CTTCTTCCEEECCSS-CCSCCC----CTTCTTCCEEECTTS
T ss_pred --cCCCCcCCEEECCCC-cCCeec----CCCCCcCCEEECCCC
Confidence 455666666666665 344331 345555666665555
No 75
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=98.98 E-value=2.6e-09 Score=94.67 Aligned_cols=135 Identities=15% Similarity=0.130 Sum_probs=88.0
Q ss_pred CCCcEEEEecccceEecCCCCccccccCCCCcccEEeccCCcccccccccCCccccCCCCccEEEEecCCCcceecCCcc
Q 038204 18 RNLEILYLSRTSYTEILSNEGHSEKHVGKFSQVKHLQPYKLNDLKQLWKQGSKLDFIFTNLEILRVYCCQNLIVLLPSSS 97 (254)
Q Consensus 18 ~~L~~L~l~~c~l~~l~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~l~~~~~~~~~~~~~L~~L~l~~C~~L~~l~p~~~ 97 (254)
++|++|++++|.++.+.+ ..++.+++|++|++.++.-...+.. .....+++|++|+++++. +..+.|..+
T Consensus 30 ~~l~~L~Ls~n~i~~~~~------~~~~~l~~L~~L~L~~n~~~~~i~~---~~~~~l~~L~~L~Ls~n~-l~~~~~~~~ 99 (455)
T 3v47_A 30 AHVNYVDLSLNSIAELNE------TSFSRLQDLQFLKVEQQTPGLVIRN---NTFRGLSSLIILKLDYNQ-FLQLETGAF 99 (455)
T ss_dssp TTCCEEECCSSCCCEECT------TTTSSCTTCCEEECCCCSTTCEECT---TTTTTCTTCCEEECTTCT-TCEECTTTT
T ss_pred CccCEEEecCCccCcCCh------hHhccCccccEEECcCCcccceECc---ccccccccCCEEeCCCCc-cCccChhhc
Confidence 688999999987777644 1356688899999887754323311 124557888899988874 555556667
Q ss_pred cccccccEEEeeccccccccccchhhccccccceeEEecCCCceeEeecCCCCccccccccccceeecccc
Q 038204 98 VSFRNLTDLQVWGCKELMKLVTSSTAKSLVRLRIMKVCGSRAMTQVVTSEKDGAEDEIVFSNLKALTLLDL 168 (254)
Q Consensus 98 ~~~~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~C~~l~~i~~~~~~~~~~~~~~~~L~~L~l~~c 168 (254)
..+++|++|++++|.--...+.......+++|++|+++++. +..+.. ......+++|+.|++.++
T Consensus 100 ~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~-----~~~~~~l~~L~~L~L~~n 164 (455)
T 3v47_A 100 NGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNN-IKKIQP-----ASFFLNMRRFHVLDLTFN 164 (455)
T ss_dssp TTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSB-CCSCCC-----CGGGGGCTTCCEEECTTC
T ss_pred cCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCc-cCccCc-----ccccCCCCcccEEeCCCC
Confidence 78888888888888532222222235678888888888875 332211 001345677888877765
No 76
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=98.98 E-value=1.2e-09 Score=92.43 Aligned_cols=175 Identities=13% Similarity=0.059 Sum_probs=96.1
Q ss_pred hCCCCcEEEEecccceEecCCCCcccccc--CCCCcccEEeccCCccccccccc-CCccccCCCCccEEEEecCCCccee
Q 038204 16 KFRNLEILYLSRTSYTEILSNEGHSEKHV--GKFSQVKHLQPYKLNDLKQLWKQ-GSKLDFIFTNLEILRVYCCQNLIVL 92 (254)
Q Consensus 16 ~l~~L~~L~l~~c~l~~l~~~~~~~~~~~--~~~~~L~~L~L~~~~~L~~l~~~-~~~~~~~~~~L~~L~l~~C~~L~~l 92 (254)
.+++|++|++++|.+....+. .+ +.+++|++|+++++. +...... .......+++|++|++++|. +..+
T Consensus 89 ~~~~L~~L~l~~n~l~~~~~~------~~~~~~~~~L~~L~Ls~n~-i~~~~~~~~~~~~~~~~~L~~L~Ls~n~-l~~~ 160 (310)
T 4glp_A 89 AYSRLKELTLEDLKITGTMPP------LPLEATGLALSSLRLRNVS-WATGRSWLAELQQWLKPGLKVLSIAQAH-SPAF 160 (310)
T ss_dssp HHSCCCEEEEESCCCBSCCCC------CSSSCCCBCCSSCEEESCC-CSSTTSSHHHHHTTBCSCCCEEEEECCS-SCCC
T ss_pred ccCceeEEEeeCCEeccchhh------hhhhccCCCCCEEEeeccc-ccchhhhhHHHHhhhccCCCEEEeeCCC-cchh
Confidence 356799999999976644331 12 457888888887753 2221000 00112357788888888764 4555
Q ss_pred cCCcccccccccEEEeeccccccc--cccchhhccccccceeEEecCCCceeEeecCCCCccccccccccceeecccccc
Q 038204 93 LPSSSVSFRNLTDLQVWGCKELMK--LVTSSTAKSLVRLRIMKVCGSRAMTQVVTSEKDGAEDEIVFSNLKALTLLDLDS 170 (254)
Q Consensus 93 ~p~~~~~~~~L~~L~i~~C~~L~~--l~~~~~~~~l~~L~~L~i~~C~~l~~i~~~~~~~~~~~~~~~~L~~L~l~~c~~ 170 (254)
.+..+..+++|++|+++++.-... ++.......+++|++|++++|. +..+.... ......+++|++|+++++ +
T Consensus 161 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~---~~l~~~l~~L~~L~Ls~N-~ 235 (310)
T 4glp_A 161 SCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTG-METPTGVC---AALAAAGVQPHSLDLSHN-S 235 (310)
T ss_dssp CTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSC-CCCHHHHH---HHHHHHTCCCSSEECTTS-C
T ss_pred hHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCC-CCchHHHH---HHHHhcCCCCCEEECCCC-C
Confidence 455566788888888888753322 2111223567778888887774 32221100 000123467777777765 3
Q ss_pred ccee-cCCCcc-ccCCCcCeEEEeCCCCCcccCCCC
Q 038204 171 LTSF-CSGNYT-FKFPSLRDLEVIGCPKMKIFTTGE 204 (254)
Q Consensus 171 L~~~-~~~~~~-~~~~sL~~L~i~~Cp~L~~lp~~~ 204 (254)
++.. +..... ..+++|++|+++++ +++.+|...
T Consensus 236 l~~~~p~~~~~~~~~~~L~~L~Ls~N-~l~~lp~~~ 270 (310)
T 4glp_A 236 LRATVNPSAPRCMWSSALNSLNLSFA-GLEQVPKGL 270 (310)
T ss_dssp CCCCCCSCCSSCCCCTTCCCEECCSS-CCCSCCSCC
T ss_pred CCccchhhHHhccCcCcCCEEECCCC-CCCchhhhh
Confidence 4443 221100 11256777777666 455666544
No 77
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=98.98 E-value=1.1e-09 Score=92.81 Aligned_cols=169 Identities=12% Similarity=0.040 Sum_probs=113.5
Q ss_pred eechHHHhhCCCCcEEEEecccceEecCCCCccccccCCCCcccEEeccCCcccc-cccccCCccccCCC-CccEEEEec
Q 038204 8 CFPLGLLEKFRNLEILYLSRTSYTEILSNEGHSEKHVGKFSQVKHLQPYKLNDLK-QLWKQGSKLDFIFT-NLEILRVYC 85 (254)
Q Consensus 8 ~~P~~~~~~l~~L~~L~l~~c~l~~l~~~~~~~~~~~~~~~~L~~L~L~~~~~L~-~l~~~~~~~~~~~~-~L~~L~l~~ 85 (254)
.+|.. +.++++|++|++++|.+....+ ..++.+++|++|++.++. +. .+. .....++ +|++|++++
T Consensus 116 ~~p~~-~~~l~~L~~L~Ls~N~l~~~~p------~~~~~l~~L~~L~L~~N~-l~~~~p----~~l~~l~~~L~~L~L~~ 183 (313)
T 1ogq_A 116 AIPDF-LSQIKTLVTLDFSYNALSGTLP------PSISSLPNLVGITFDGNR-ISGAIP----DSYGSFSKLFTSMTISR 183 (313)
T ss_dssp ECCGG-GGGCTTCCEEECCSSEEESCCC------GGGGGCTTCCEEECCSSC-CEEECC----GGGGCCCTTCCEEECCS
T ss_pred cCCHH-HhCCCCCCEEeCCCCccCCcCC------hHHhcCCCCCeEECcCCc-ccCcCC----HHHhhhhhcCcEEECcC
Confidence 45654 4689999999999997763322 235679999999998864 33 221 1234465 899999998
Q ss_pred CCCcceecCCcccccccccEEEeeccccccccccchhhccccccceeEEecCCCceeEeecCCCCccccccccccceeec
Q 038204 86 CQNLIVLLPSSSVSFRNLTDLQVWGCKELMKLVTSSTAKSLVRLRIMKVCGSRAMTQVVTSEKDGAEDEIVFSNLKALTL 165 (254)
Q Consensus 86 C~~L~~l~p~~~~~~~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~C~~l~~i~~~~~~~~~~~~~~~~L~~L~l 165 (254)
+. +....|..+..++ |+.|+++++. ++...+ .....+++|+.|+++++. +...+. ....+++|+.|++
T Consensus 184 N~-l~~~~~~~~~~l~-L~~L~Ls~N~-l~~~~~-~~~~~l~~L~~L~L~~N~-l~~~~~-------~~~~l~~L~~L~L 251 (313)
T 1ogq_A 184 NR-LTGKIPPTFANLN-LAFVDLSRNM-LEGDAS-VLFGSDKNTQKIHLAKNS-LAFDLG-------KVGLSKNLNGLDL 251 (313)
T ss_dssp SE-EEEECCGGGGGCC-CSEEECCSSE-EEECCG-GGCCTTSCCSEEECCSSE-ECCBGG-------GCCCCTTCCEEEC
T ss_pred Ce-eeccCChHHhCCc-ccEEECcCCc-ccCcCC-HHHhcCCCCCEEECCCCc-eeeecC-------cccccCCCCEEEC
Confidence 74 4433365566666 9999999884 443322 456788999999999885 322211 2335688999999
Q ss_pred ccccccc-eecCCCccccCCCcCeEEEeCCCCCcccCCC
Q 038204 166 LDLDSLT-SFCSGNYTFKFPSLRDLEVIGCPKMKIFTTG 203 (254)
Q Consensus 166 ~~c~~L~-~~~~~~~~~~~~sL~~L~i~~Cp~L~~lp~~ 203 (254)
.++ +++ .++. ....+++|++|++++++--..+|..
T Consensus 252 s~N-~l~~~~p~--~l~~l~~L~~L~Ls~N~l~~~ip~~ 287 (313)
T 1ogq_A 252 RNN-RIYGTLPQ--GLTQLKFLHSLNVSFNNLCGEIPQG 287 (313)
T ss_dssp CSS-CCEECCCG--GGGGCTTCCEEECCSSEEEEECCCS
T ss_pred cCC-cccCcCCh--HHhcCcCCCEEECcCCcccccCCCC
Confidence 887 454 3333 2356788999999888644456654
No 78
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=98.98 E-value=6.8e-10 Score=85.28 Aligned_cols=116 Identities=20% Similarity=0.240 Sum_probs=54.9
Q ss_pred CCCCccEEEEecCCCcceecCCcccccccccEEEeeccccccccccchhhccccccceeEEecCCCceeEeecCCCCccc
Q 038204 74 IFTNLEILRVYCCQNLIVLLPSSSVSFRNLTDLQVWGCKELMKLVTSSTAKSLVRLRIMKVCGSRAMTQVVTSEKDGAED 153 (254)
Q Consensus 74 ~~~~L~~L~l~~C~~L~~l~p~~~~~~~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~C~~l~~i~~~~~~~~~~ 153 (254)
.+++|++|++++|. ++.+ +. +..+++|++|++++|. ++... ......+++|+.|++++|. +..+.. ...
T Consensus 47 ~l~~L~~L~l~~n~-l~~~-~~-~~~l~~L~~L~Ls~N~-l~~~~-~~~~~~l~~L~~L~Ls~N~-l~~~~~-----~~~ 115 (168)
T 2ell_A 47 EFVNLEFLSLINVG-LISV-SN-LPKLPKLKKLELSENR-IFGGL-DMLAEKLPNLTHLNLSGNK-LKDIST-----LEP 115 (168)
T ss_dssp GGGGCCEEEEESSC-CCCC-SS-CCCCSSCCEEEEESCC-CCSCC-CHHHHHCTTCCEEECBSSS-CCSSGG-----GGG
T ss_pred hCCCCCEEeCcCCC-CCCh-hh-hccCCCCCEEECcCCc-CchHH-HHHHhhCCCCCEEeccCCc-cCcchh-----HHH
Confidence 34555555555543 4433 22 4455556666665553 22211 1233345566666666553 322210 012
Q ss_pred cccccccceeecccccccceecC--CCccccCCCcCeEEEeCCCCCcccCC
Q 038204 154 EIVFSNLKALTLLDLDSLTSFCS--GNYTFKFPSLRDLEVIGCPKMKIFTT 202 (254)
Q Consensus 154 ~~~~~~L~~L~l~~c~~L~~~~~--~~~~~~~~sL~~L~i~~Cp~L~~lp~ 202 (254)
...+++|+.|++.++ .++.++. ......+++|++|++.+|+ ++.+|.
T Consensus 116 l~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~l~~L~~L~l~~n~-~~~~~~ 164 (168)
T 2ell_A 116 LKKLECLKSLDLFNC-EVTNLNDYRESVFKLLPQLTYLDGYDRE-DQEAPD 164 (168)
T ss_dssp GSSCSCCCEEECCSS-GGGTSTTHHHHHHTTCSSCCEETTEETT-SCBCCS
T ss_pred HhcCCCCCEEEeeCC-cCcchHHHHHHHHHhCccCcEecCCCCC-hhhccc
Confidence 234556666666655 3333332 0012356777777777774 344443
No 79
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=98.98 E-value=5.3e-09 Score=100.05 Aligned_cols=136 Identities=15% Similarity=0.127 Sum_probs=82.2
Q ss_pred CCCCcEEEEecccceEecCCCCccccccCCCCcccEEeccCCcccccccccCCccccCCCCccEEEEecCCCcceecCCc
Q 038204 17 FRNLEILYLSRTSYTEILSNEGHSEKHVGKFSQVKHLQPYKLNDLKQLWKQGSKLDFIFTNLEILRVYCCQNLIVLLPSS 96 (254)
Q Consensus 17 l~~L~~L~l~~c~l~~l~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~l~~~~~~~~~~~~~L~~L~l~~C~~L~~l~p~~ 96 (254)
.++|++|++++|.++.+.+ ..++.+++|++|+++++.....+.. .....+++|++|+++++. +..+.|..
T Consensus 23 p~~l~~LdLs~N~i~~i~~------~~~~~l~~L~~LdLs~n~~~~~i~~---~~f~~L~~L~~L~Ls~N~-l~~~~p~~ 92 (844)
T 3j0a_A 23 LNTTERLLLSFNYIRTVTA------SSFPFLEQLQLLELGSQYTPLTIDK---EAFRNLPNLRILDLGSSK-IYFLHPDA 92 (844)
T ss_dssp CTTCCEEEEESCCCCEECS------SSCSSCCSCSEEEECTTCCCCEECT---TTTSSCTTCCEEECTTCC-CCEECTTS
T ss_pred CCCcCEEECCCCcCCccCh------hHCcccccCeEEeCCCCCCccccCH---HHhcCCCCCCEEECCCCc-CcccCHhH
Confidence 4678888888887776644 1245678888888877755444422 124567778888887763 55555666
Q ss_pred ccccccccEEEeeccccccccccchhhccccccceeEEecCCCceeEeecCCCCccccccccccceeecccc
Q 038204 97 SVSFRNLTDLQVWGCKELMKLVTSSTAKSLVRLRIMKVCGSRAMTQVVTSEKDGAEDEIVFSNLKALTLLDL 168 (254)
Q Consensus 97 ~~~~~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~C~~l~~i~~~~~~~~~~~~~~~~L~~L~l~~c 168 (254)
+..+++|++|++++|.--...+.......+++|++|+++++. +..+.. ......+++|+.|++.++
T Consensus 93 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~-l~~~~~-----~~~~~~L~~L~~L~Ls~N 158 (844)
T 3j0a_A 93 FQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQ-IRSLYL-----HPSFGKLNSLKSIDFSSN 158 (844)
T ss_dssp SCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCC-CCCCCC-----CGGGGTCSSCCEEEEESS
T ss_pred ccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCc-cccccc-----chhHhhCCCCCEEECCCC
Confidence 777778888888777422222222235667777777777764 222111 012334566666666554
No 80
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=98.97 E-value=3.9e-09 Score=85.43 Aligned_cols=132 Identities=22% Similarity=0.170 Sum_probs=62.5
Q ss_pred CCcccEEeccCCcccccccccCCccccCCCCccEEEEecCCCcceecCCcccccccccEEEeeccccccccccchhhccc
Q 038204 47 FSQVKHLQPYKLNDLKQLWKQGSKLDFIFTNLEILRVYCCQNLIVLLPSSSVSFRNLTDLQVWGCKELMKLVTSSTAKSL 126 (254)
Q Consensus 47 ~~~L~~L~L~~~~~L~~l~~~~~~~~~~~~~L~~L~l~~C~~L~~l~p~~~~~~~~L~~L~i~~C~~L~~l~~~~~~~~l 126 (254)
.++|++|+|+++ .++.+.. .....+++|++|+++++. +..+.+..+..+++|+.|+++++ +++.++. .....+
T Consensus 39 ~~~L~~L~Ls~n-~i~~~~~---~~~~~l~~L~~L~L~~N~-l~~i~~~~~~~l~~L~~L~Ls~N-~l~~l~~-~~~~~l 111 (229)
T 3e6j_A 39 PTNAQILYLHDN-QITKLEP---GVFDSLINLKELYLGSNQ-LGALPVGVFDSLTQLTVLDLGTN-QLTVLPS-AVFDRL 111 (229)
T ss_dssp CTTCSEEECCSS-CCCCCCT---TTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS-CCCCCCT-TTTTTC
T ss_pred CCCCCEEEcCCC-ccCccCH---HHhhCccCCcEEECCCCC-CCCcChhhcccCCCcCEEECCCC-cCCccCh-hHhCcc
Confidence 355666666553 2333211 112345556666666542 44443332345566666666555 3444422 223455
Q ss_pred cccceeEEecCCCceeEeecCCCCccccccccccceeecccccccceecCCCccccCCCcCeEEEeCCC
Q 038204 127 VRLRIMKVCGSRAMTQVVTSEKDGAEDEIVFSNLKALTLLDLDSLTSFCSGNYTFKFPSLRDLEVIGCP 195 (254)
Q Consensus 127 ~~L~~L~i~~C~~l~~i~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~~sL~~L~i~~Cp 195 (254)
++|+.|+++++. +..++. ....+++|+.|++.+. +++.++... ...+++|+.|++.+.|
T Consensus 112 ~~L~~L~Ls~N~-l~~lp~-------~~~~l~~L~~L~L~~N-~l~~~~~~~-~~~l~~L~~L~l~~N~ 170 (229)
T 3e6j_A 112 VHLKELFMCCNK-LTELPR-------GIERLTHLTHLALDQN-QLKSIPHGA-FDRLSSLTHAYLFGNP 170 (229)
T ss_dssp TTCCEEECCSSC-CCSCCT-------TGGGCTTCSEEECCSS-CCCCCCTTT-TTTCTTCCEEECTTSC
T ss_pred hhhCeEeccCCc-ccccCc-------ccccCCCCCEEECCCC-cCCccCHHH-HhCCCCCCEEEeeCCC
Confidence 566666665553 333322 2234555666666554 454444321 2345556666555543
No 81
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=98.95 E-value=2.3e-09 Score=99.46 Aligned_cols=166 Identities=10% Similarity=0.054 Sum_probs=100.6
Q ss_pred echHHH-hhCCCCcEEEEecccce-EecCCCCccccccCCCCcccEEeccCCccccc--ccccC--CccccCCCCccEEE
Q 038204 9 FPLGLL-EKFRNLEILYLSRTSYT-EILSNEGHSEKHVGKFSQVKHLQPYKLNDLKQ--LWKQG--SKLDFIFTNLEILR 82 (254)
Q Consensus 9 ~P~~~~-~~l~~L~~L~l~~c~l~-~l~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~--l~~~~--~~~~~~~~~L~~L~ 82 (254)
+|..+. .++++|++|++++|.+. .++. .++.+++|++|++.++..++. +.... ......+++|++|+
T Consensus 239 ip~~l~~~~l~~L~~L~L~~n~l~~~~p~-------~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~ 311 (636)
T 4eco_A 239 KTEDLKWDNLKDLTDVEVYNCPNLTKLPT-------FLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIY 311 (636)
T ss_dssp TTSCCCGGGCTTCCEEEEECCTTCSSCCT-------TTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEE
T ss_pred CchhhhhcccCCCCEEEecCCcCCccChH-------HHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEE
Confidence 566542 38999999999999544 3433 366789999999988764543 22110 00012347888888
Q ss_pred EecCCCcceecCC--cccccccccEEEeeccccccccccchhhccccccceeEEecCCCceeEeecCCCCccccccccc-
Q 038204 83 VYCCQNLIVLLPS--SSVSFRNLTDLQVWGCKELMKLVTSSTAKSLVRLRIMKVCGSRAMTQVVTSEKDGAEDEIVFSN- 159 (254)
Q Consensus 83 l~~C~~L~~l~p~--~~~~~~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~C~~l~~i~~~~~~~~~~~~~~~~- 159 (254)
+++|. ++.+ |. .+..+++|+.|+++++.--..++ ....+++|+.|+++++. +..++. ....+++
T Consensus 312 L~~n~-l~~i-p~~~~l~~l~~L~~L~L~~N~l~g~ip---~~~~l~~L~~L~L~~N~-l~~lp~-------~l~~l~~~ 378 (636)
T 4eco_A 312 IGYNN-LKTF-PVETSLQKMKKLGMLECLYNQLEGKLP---AFGSEIKLASLNLAYNQ-ITEIPA-------NFCGFTEQ 378 (636)
T ss_dssp CCSSC-CSSC-CCHHHHTTCTTCCEEECCSCCCEEECC---CCEEEEEESEEECCSSE-EEECCT-------TSEEECTT
T ss_pred CCCCc-CCcc-CchhhhccCCCCCEEeCcCCcCccchh---hhCCCCCCCEEECCCCc-cccccH-------hhhhhccc
Confidence 88874 5555 55 57778888888888775322443 45677788888888774 433332 2344566
Q ss_pred cceeecccccccceecCCCccccCCCcCeEEEeCCC
Q 038204 160 LKALTLLDLDSLTSFCSGNYTFKFPSLRDLEVIGCP 195 (254)
Q Consensus 160 L~~L~l~~c~~L~~~~~~~~~~~~~sL~~L~i~~Cp 195 (254)
|+.|++.++ +++.++.......+++|+.|++++|.
T Consensus 379 L~~L~Ls~N-~l~~lp~~~~~~~l~~L~~L~Ls~N~ 413 (636)
T 4eco_A 379 VENLSFAHN-KLKYIPNIFDAKSVSVMSAIDFSYNE 413 (636)
T ss_dssp CCEEECCSS-CCSSCCSCCCTTCSSCEEEEECCSSC
T ss_pred CcEEEccCC-cCcccchhhhhcccCccCEEECcCCc
Confidence 777777665 34444432211223355566655554
No 82
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=98.95 E-value=5.8e-10 Score=94.43 Aligned_cols=171 Identities=18% Similarity=0.095 Sum_probs=116.5
Q ss_pred eechHHH-hhCCCCcEEEEecccceEecCCCCccccccCCC-----CcccEEeccCCcccccccccCCccccCCCCccEE
Q 038204 8 CFPLGLL-EKFRNLEILYLSRTSYTEILSNEGHSEKHVGKF-----SQVKHLQPYKLNDLKQLWKQGSKLDFIFTNLEIL 81 (254)
Q Consensus 8 ~~P~~~~-~~l~~L~~L~l~~c~l~~l~~~~~~~~~~~~~~-----~~L~~L~L~~~~~L~~l~~~~~~~~~~~~~L~~L 81 (254)
.+|..++ ..+++|++|++++|.+..++. .++.+ ++|++|+++++. +..+.. .....+++|++|
T Consensus 110 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-------~~~~l~~~~~~~L~~L~L~~N~-l~~~~~---~~~~~l~~L~~L 178 (312)
T 1wwl_A 110 TAPPPLLEATGPDLNILNLRNVSWATRDA-------WLAELQQWLKPGLKVLSIAQAH-SLNFSC---EQVRVFPALSTL 178 (312)
T ss_dssp CCCCCSSSCCSCCCSEEEEESCBCSSSSS-------HHHHHHTTCCTTCCEEEEESCS-CCCCCT---TTCCCCSSCCEE
T ss_pred hhHHHHHHhcCCCccEEEccCCCCcchhH-------HHHHHHHhhcCCCcEEEeeCCC-CccchH---HHhccCCCCCEE
Confidence 4566543 789999999999997776532 12223 899999998864 444421 234578999999
Q ss_pred EEecCCCcceec-CCcc--cccccccEEEeecccccccccc--chhhccccccceeEEecCCCceeEeecCCCCcccccc
Q 038204 82 RVYCCQNLIVLL-PSSS--VSFRNLTDLQVWGCKELMKLVT--SSTAKSLVRLRIMKVCGSRAMTQVVTSEKDGAEDEIV 156 (254)
Q Consensus 82 ~l~~C~~L~~l~-p~~~--~~~~~L~~L~i~~C~~L~~l~~--~~~~~~l~~L~~L~i~~C~~l~~i~~~~~~~~~~~~~ 156 (254)
+++++.-..... +..+ ..+++|++|++++|. ++.++. ......+++|+.|+++++. +...+.. .....
T Consensus 179 ~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~-----~~~~~ 251 (312)
T 1wwl_A 179 DLSDNPELGERGLISALCPLKFPTLQVLALRNAG-METPSGVCSALAAARVQLQGLDLSHNS-LRDAAGA-----PSCDW 251 (312)
T ss_dssp ECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSC-CCCHHHHHHHHHHTTCCCSEEECTTSC-CCSSCCC-----SCCCC
T ss_pred ECCCCCcCcchHHHHHHHhccCCCCCEEECCCCc-CcchHHHHHHHHhcCCCCCEEECCCCc-CCcccch-----hhhhh
Confidence 999987443210 1112 678999999999984 553321 1234577999999999985 4332210 12234
Q ss_pred ccccceeecccccccceecCCCccccCCCcCeEEEeCCCCCcccCC
Q 038204 157 FSNLKALTLLDLDSLTSFCSGNYTFKFPSLRDLEVIGCPKMKIFTT 202 (254)
Q Consensus 157 ~~~L~~L~l~~c~~L~~~~~~~~~~~~~sL~~L~i~~Cp~L~~lp~ 202 (254)
+++|+.|++.++ +++.++... .++|++|+++++ +++.+|.
T Consensus 252 l~~L~~L~Ls~N-~l~~ip~~~----~~~L~~L~Ls~N-~l~~~p~ 291 (312)
T 1wwl_A 252 PSQLNSLNLSFT-GLKQVPKGL----PAKLSVLDLSYN-RLDRNPS 291 (312)
T ss_dssp CTTCCEEECTTS-CCSSCCSSC----CSEEEEEECCSS-CCCSCCC
T ss_pred cCCCCEEECCCC-ccChhhhhc----cCCceEEECCCC-CCCCChh
Confidence 689999999987 677776532 178999999988 5777765
No 83
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=98.94 E-value=4.4e-08 Score=89.82 Aligned_cols=172 Identities=15% Similarity=0.081 Sum_probs=115.2
Q ss_pred CCCcccEEeccCCcccccccccCCccccCCCCccEEEEecCCCcceecCCcccccccccEEEeeccccccccccchhhcc
Q 038204 46 KFSQVKHLQPYKLNDLKQLWKQGSKLDFIFTNLEILRVYCCQNLIVLLPSSSVSFRNLTDLQVWGCKELMKLVTSSTAKS 125 (254)
Q Consensus 46 ~~~~L~~L~L~~~~~L~~l~~~~~~~~~~~~~L~~L~l~~C~~L~~l~p~~~~~~~~L~~L~i~~C~~L~~l~~~~~~~~ 125 (254)
.+++|+.+.+..+...... .......+++++.++++++ .+....+.....+++|+.|+++++.....+.+ .....
T Consensus 418 ~l~~L~~l~l~~~~~~~~~---~~~~~~~l~~l~~l~ls~n-~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~-~~~~~ 492 (635)
T 4g8a_A 418 GLEQLEHLDFQHSNLKQMS---EFSVFLSLRNLIYLDISHT-HTRVAFNGIFNGLSSLEVLKMAGNSFQENFLP-DIFTE 492 (635)
T ss_dssp TCTTCCEEECTTSEEESTT---SSCTTTTCTTCCEEECTTS-CCEECCTTTTTTCTTCCEEECTTCEEGGGEEC-SCCTT
T ss_pred ccccccchhhhhccccccc---ccccccccccccccccccc-ccccccccccccchhhhhhhhhhcccccccCc-hhhhh
Confidence 4566666666655433322 1122345677888888775 34444455567789999999999976665543 45678
Q ss_pred ccccceeEEecCCCceeEeecCCCCccccccccccceeecccccccceecCCCccccCCCcCeEEEeCCCCCcccCCCCC
Q 038204 126 LVRLRIMKVCGSRAMTQVVTSEKDGAEDEIVFSNLKALTLLDLDSLTSFCSGNYTFKFPSLRDLEVIGCPKMKIFTTGEL 205 (254)
Q Consensus 126 l~~L~~L~i~~C~~l~~i~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~~sL~~L~i~~Cp~L~~lp~~~~ 205 (254)
+++|++|++++|. ++.++. .....+++|+.|++.++ +++.++... ...+++|+.|+++++ +++.+++...
T Consensus 493 l~~L~~L~Ls~N~-L~~l~~------~~f~~l~~L~~L~Ls~N-~l~~l~~~~-~~~l~~L~~L~Ls~N-~l~~~~~~~l 562 (635)
T 4g8a_A 493 LRNLTFLDLSQCQ-LEQLSP------TAFNSLSSLQVLNMSHN-NFFSLDTFP-YKCLNSLQVLDYSLN-HIMTSKKQEL 562 (635)
T ss_dssp CTTCCEEECTTSC-CCEECT------TTTTTCTTCCEEECTTS-CCCBCCCGG-GTTCTTCCEEECTTS-CCCBCCSSCT
T ss_pred ccccCEEECCCCc-cCCcCh------HHHcCCCCCCEEECCCC-cCCCCChhH-HhCCCCCCEEECCCC-cCCCCCHHHH
Confidence 8999999999994 666643 13446899999999987 777776542 346899999999998 4666655443
Q ss_pred -CCCC---eEEEeeCCCCCcccccccHHHHHHHHHH
Q 038204 206 -CTPP---RVNVWYGEGDGECRWANDLNVTIQELHA 237 (254)
Q Consensus 206 -~~~~---~~~i~~~~~~~~~~~~~d~~~~i~~~~~ 237 (254)
..+. .+.+ .+..|.|++++.. ...|..
T Consensus 563 ~~l~~~L~~L~L----~~Np~~C~C~~~~-~~~wl~ 593 (635)
T 4g8a_A 563 QHFPSSLAFLNL----TQNDFACTCEHQS-FLQWIK 593 (635)
T ss_dssp TCCCTTCCEEEC----TTCCBCCSGGGHH-HHHHHH
T ss_pred HhhhCcCCEEEe----eCCCCcccCCcHH-HHHHHH
Confidence 3322 5565 5678899888633 344443
No 84
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=98.93 E-value=3.1e-08 Score=92.20 Aligned_cols=34 Identities=18% Similarity=0.020 Sum_probs=18.2
Q ss_pred cceeecccccccceecCCCccccCCCcCeEEEeCCC
Q 038204 160 LKALTLLDLDSLTSFCSGNYTFKFPSLRDLEVIGCP 195 (254)
Q Consensus 160 L~~L~l~~c~~L~~~~~~~~~~~~~sL~~L~i~~Cp 195 (254)
|+.|++.++ +++.+.... ...+++|++|+++++.
T Consensus 250 L~~L~Ls~n-~l~~~~~~~-~~~l~~L~~L~L~~n~ 283 (680)
T 1ziw_A 250 LTMLDLSYN-NLNVVGNDS-FAWLPQLEYFFLEYNN 283 (680)
T ss_dssp CCEEECTTS-CCCEECTTT-TTTCTTCCEEECCSCC
T ss_pred CCEEECCCC-CcCccCccc-ccCcccccEeeCCCCc
Confidence 666666554 344443221 2345667777776663
No 85
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=98.93 E-value=2.2e-09 Score=85.33 Aligned_cols=131 Identities=16% Similarity=0.107 Sum_probs=68.7
Q ss_pred CCCcEEEEecccceEecCCCCccccccCCCCcccEEeccCCcccccccccCCccccCCCCccEEEEecCCCcceecCCcc
Q 038204 18 RNLEILYLSRTSYTEILSNEGHSEKHVGKFSQVKHLQPYKLNDLKQLWKQGSKLDFIFTNLEILRVYCCQNLIVLLPSSS 97 (254)
Q Consensus 18 ~~L~~L~l~~c~l~~l~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~l~~~~~~~~~~~~~L~~L~l~~C~~L~~l~p~~~ 97 (254)
++|++|++++++++.++. ..++.+++|++|++.+. +++.+... ....+++|++|+++++ +++.+.+..+
T Consensus 28 ~~l~~L~l~~n~l~~~~~------~~~~~l~~L~~L~l~~n-~l~~~~~~---~~~~l~~L~~L~Ls~n-~l~~~~~~~~ 96 (208)
T 2o6s_A 28 AQTTYLDLETNSLKSLPN------GVFDELTSLTQLYLGGN-KLQSLPNG---VFNKLTSLTYLNLSTN-QLQSLPNGVF 96 (208)
T ss_dssp TTCSEEECCSSCCCCCCT------TTTTTCTTCSEEECCSS-CCCCCCTT---TTTTCTTCCEEECCSS-CCCCCCTTTT
T ss_pred CCCcEEEcCCCccCcCCh------hhhcccccCcEEECCCC-ccCccChh---hcCCCCCcCEEECCCC-cCCccCHhHh
Confidence 466777777765554433 11334666777777654 34443211 1234566777777665 3445433334
Q ss_pred cccccccEEEeeccccccccccchhhccccccceeEEecCCCceeEeecCCCCccccccccccceeecccc
Q 038204 98 VSFRNLTDLQVWGCKELMKLVTSSTAKSLVRLRIMKVCGSRAMTQVVTSEKDGAEDEIVFSNLKALTLLDL 168 (254)
Q Consensus 98 ~~~~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~C~~l~~i~~~~~~~~~~~~~~~~L~~L~l~~c 168 (254)
..+++|++|+++++ +++.++. .....+++|+.|+++++. +..++. .....+++|+.|++.+.
T Consensus 97 ~~l~~L~~L~L~~N-~l~~~~~-~~~~~l~~L~~L~l~~N~-l~~~~~------~~~~~l~~L~~L~l~~N 158 (208)
T 2o6s_A 97 DKLTQLKELALNTN-QLQSLPD-GVFDKLTQLKDLRLYQNQ-LKSVPD------GVFDRLTSLQYIWLHDN 158 (208)
T ss_dssp TTCTTCCEEECCSS-CCCCCCT-TTTTTCTTCCEEECCSSC-CSCCCT------TTTTTCTTCCEEECCSC
T ss_pred cCccCCCEEEcCCC-cCcccCH-hHhccCCcCCEEECCCCc-cceeCH------HHhccCCCccEEEecCC
Confidence 55666777776665 3444432 234556666666666653 332221 11233556666666654
No 86
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=98.93 E-value=3.7e-09 Score=95.37 Aligned_cols=157 Identities=15% Similarity=0.165 Sum_probs=106.8
Q ss_pred hCCCCcEEEEecccceEecCCCCccccccCCCCcccEEeccCCcccccccccCCccccCCCCccEEEEecCCCcceecCC
Q 038204 16 KFRNLEILYLSRTSYTEILSNEGHSEKHVGKFSQVKHLQPYKLNDLKQLWKQGSKLDFIFTNLEILRVYCCQNLIVLLPS 95 (254)
Q Consensus 16 ~l~~L~~L~l~~c~l~~l~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~l~~~~~~~~~~~~~L~~L~l~~C~~L~~l~p~ 95 (254)
.+++|++|++++|.+.+..+ ..++.+++|++|+++++. ++.+.. .+.....+++|++|+++++.--..+.+.
T Consensus 322 ~l~~L~~L~Ls~n~l~~~~~------~~~~~l~~L~~L~L~~N~-l~~l~~-~~~~~~~l~~L~~L~Ls~N~l~~~l~~~ 393 (520)
T 2z7x_B 322 KISPFLHLDFSNNLLTDTVF------ENCGHLTELETLILQMNQ-LKELSK-IAEMTTQMKSLQQLDISQNSVSYDEKKG 393 (520)
T ss_dssp SCCCCCEEECCSSCCCTTTT------TTCCCCSSCCEEECCSSC-CCBHHH-HHHHHTTCTTCCEEECCSSCCBCCGGGC
T ss_pred hCCcccEEEeECCccChhhh------hhhccCCCCCEEEccCCc-cCcccc-chHHHhhCCCCCEEECCCCcCCcccccc
Confidence 45666666666664443211 235679999999998863 443210 0112456899999999997533325333
Q ss_pred cccccccccEEEeeccccccccccchhhccc-cccceeEEecCCCceeEeecCCCCccccccccccceeeccccccccee
Q 038204 96 SSVSFRNLTDLQVWGCKELMKLVTSSTAKSL-VRLRIMKVCGSRAMTQVVTSEKDGAEDEIVFSNLKALTLLDLDSLTSF 174 (254)
Q Consensus 96 ~~~~~~~L~~L~i~~C~~L~~l~~~~~~~~l-~~L~~L~i~~C~~l~~i~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~ 174 (254)
.+..+++|+.|++++|.--... ...+ ++|+.|++++|. +..++. ....+++|+.|++.++ +++.+
T Consensus 394 ~~~~l~~L~~L~Ls~N~l~~~~-----~~~l~~~L~~L~Ls~N~-l~~ip~-------~~~~l~~L~~L~L~~N-~l~~l 459 (520)
T 2z7x_B 394 DCSWTKSLLSLNMSSNILTDTI-----FRCLPPRIKVLDLHSNK-IKSIPK-------QVVKLEALQELNVASN-QLKSV 459 (520)
T ss_dssp SCCCCTTCCEEECCSSCCCGGG-----GGSCCTTCCEEECCSSC-CCCCCG-------GGGGCTTCCEEECCSS-CCCCC
T ss_pred hhccCccCCEEECcCCCCCcch-----hhhhcccCCEEECCCCc-ccccch-------hhhcCCCCCEEECCCC-cCCcc
Confidence 3567899999999998632222 1223 689999999994 655543 3447899999999997 78887
Q ss_pred cCCCccccCCCcCeEEEeCCC
Q 038204 175 CSGNYTFKFPSLRDLEVIGCP 195 (254)
Q Consensus 175 ~~~~~~~~~~sL~~L~i~~Cp 195 (254)
+.. ....+++|++|+++++|
T Consensus 460 ~~~-~~~~l~~L~~L~l~~N~ 479 (520)
T 2z7x_B 460 PDG-IFDRLTSLQKIWLHTNP 479 (520)
T ss_dssp CTT-TTTTCTTCCEEECCSSC
T ss_pred CHH-HhccCCcccEEECcCCC
Confidence 765 23568899999999886
No 87
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=98.93 E-value=4.4e-10 Score=102.81 Aligned_cols=66 Identities=17% Similarity=0.096 Sum_probs=31.1
Q ss_pred HhhCCCCcEEEEecccceEecCCCCccccccC-CCCcccEEeccCCcccccccccCCccccCCCCccEEEEecCC
Q 038204 14 LEKFRNLEILYLSRTSYTEILSNEGHSEKHVG-KFSQVKHLQPYKLNDLKQLWKQGSKLDFIFTNLEILRVYCCQ 87 (254)
Q Consensus 14 ~~~l~~L~~L~l~~c~l~~l~~~~~~~~~~~~-~~~~L~~L~L~~~~~L~~l~~~~~~~~~~~~~L~~L~l~~C~ 87 (254)
...+++|++|++++|.+..... ..+. .+++|++|++.+|..+..... ......+++|++|++++|.
T Consensus 101 ~~~~~~L~~L~L~~~~~~~~~~------~~l~~~~~~L~~L~L~~~~~~~~~~l--~~~~~~~~~L~~L~L~~~~ 167 (594)
T 2p1m_B 101 SSSYTWLEEIRLKRMVVTDDCL------ELIAKSFKNFKVLVLSSCEGFSTDGL--AAIAATCRNLKELDLRESD 167 (594)
T ss_dssp HHHCTTCCEEEEESCBCCHHHH------HHHHHHCTTCCEEEEESCEEEEHHHH--HHHHHHCTTCCEEECTTCE
T ss_pred HHhCCCCCeEEeeCcEEcHHHH------HHHHHhCCCCcEEeCCCcCCCCHHHH--HHHHHhCCCCCEEeCcCCc
Confidence 3467777777777764332100 0111 356666666666544433100 0011234555555555554
No 88
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=98.92 E-value=1.1e-09 Score=92.56 Aligned_cols=177 Identities=16% Similarity=0.051 Sum_probs=115.7
Q ss_pred eechHHH-hhCCCCcEEEEecccceEecCCCCccccccCCCCcccEEeccCCcccccccccCCccccCCCCccEEEEecC
Q 038204 8 CFPLGLL-EKFRNLEILYLSRTSYTEILSNEGHSEKHVGKFSQVKHLQPYKLNDLKQLWKQGSKLDFIFTNLEILRVYCC 86 (254)
Q Consensus 8 ~~P~~~~-~~l~~L~~L~l~~c~l~~l~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~l~~~~~~~~~~~~~L~~L~l~~C 86 (254)
..|..++ ..+++|++|++++|.+...... ........+++|++|++.++. +..+.. .....+++|++|+++++
T Consensus 106 ~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~--~~~~~~~~~~~L~~L~Ls~n~-l~~~~~---~~~~~l~~L~~L~Ls~N 179 (310)
T 4glp_A 106 TMPPLPLEATGLALSSLRLRNVSWATGRSW--LAELQQWLKPGLKVLSIAQAH-SPAFSC---EQVRAFPALTSLDLSDN 179 (310)
T ss_dssp CCCCCSSSCCCBCCSSCEEESCCCSSTTSS--HHHHHTTBCSCCCEEEEECCS-SCCCCT---TSCCCCTTCCEEECCSC
T ss_pred chhhhhhhccCCCCCEEEeecccccchhhh--hHHHHhhhccCCCEEEeeCCC-cchhhH---HHhccCCCCCEEECCCC
Confidence 4455443 6799999999999976542210 001123458999999998864 444322 22456899999999998
Q ss_pred CCcce--ecC-CcccccccccEEEeeccccccccccc--hhhccccccceeEEecCCCceeE-eecCCCCcccccccccc
Q 038204 87 QNLIV--LLP-SSSVSFRNLTDLQVWGCKELMKLVTS--STAKSLVRLRIMKVCGSRAMTQV-VTSEKDGAEDEIVFSNL 160 (254)
Q Consensus 87 ~~L~~--l~p-~~~~~~~~L~~L~i~~C~~L~~l~~~--~~~~~l~~L~~L~i~~C~~l~~i-~~~~~~~~~~~~~~~~L 160 (254)
.-... +.+ .....+++|++|++++|. ++.++.. .....+++|++|+++++. +..+ +... .....+++|
T Consensus 180 ~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~~~l~~~l~~L~~L~Ls~N~-l~~~~p~~~----~~~~~~~~L 253 (310)
T 4glp_A 180 PGLGERGLMAALCPHKFPAIQNLALRNTG-METPTGVCAALAAAGVQPHSLDLSHNS-LRATVNPSA----PRCMWSSAL 253 (310)
T ss_dssp TTCHHHHHHTTSCTTSSCCCCSCBCCSSC-CCCHHHHHHHHHHHTCCCSSEECTTSC-CCCCCCSCC----SSCCCCTTC
T ss_pred CCccchhhhHHHhhhcCCCCCEEECCCCC-CCchHHHHHHHHhcCCCCCEEECCCCC-CCccchhhH----HhccCcCcC
Confidence 64332 211 223578999999999984 5544321 124678999999999986 4333 2100 011123799
Q ss_pred ceeecccccccceecCCCccccCCCcCeEEEeCCCCCcccCC
Q 038204 161 KALTLLDLDSLTSFCSGNYTFKFPSLRDLEVIGCPKMKIFTT 202 (254)
Q Consensus 161 ~~L~l~~c~~L~~~~~~~~~~~~~sL~~L~i~~Cp~L~~lp~ 202 (254)
++|++.++ +++.++... +++|++|+++++ +++.+|.
T Consensus 254 ~~L~Ls~N-~l~~lp~~~----~~~L~~L~Ls~N-~l~~~~~ 289 (310)
T 4glp_A 254 NSLNLSFA-GLEQVPKGL----PAKLRVLDLSSN-RLNRAPQ 289 (310)
T ss_dssp CCEECCSS-CCCSCCSCC----CSCCSCEECCSC-CCCSCCC
T ss_pred CEEECCCC-CCCchhhhh----cCCCCEEECCCC-cCCCCch
Confidence 99999886 777776532 379999999988 4666654
No 89
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=98.91 E-value=1.2e-10 Score=106.56 Aligned_cols=102 Identities=13% Similarity=0.248 Sum_probs=52.2
Q ss_pred eechHHHhhCCCCcEEEEecc-cceEecCCC----Ccc----ccccCCCCcccEEeccCCcccccccccCCccccCCCCc
Q 038204 8 CFPLGLLEKFRNLEILYLSRT-SYTEILSNE----GHS----EKHVGKFSQVKHLQPYKLNDLKQLWKQGSKLDFIFTNL 78 (254)
Q Consensus 8 ~~P~~~~~~l~~L~~L~l~~c-~l~~l~~~~----~~~----~~~~~~~~~L~~L~L~~~~~L~~l~~~~~~~~~~~~~L 78 (254)
..|..++.++++|++|++++| .+.++.... +.. ......+++|++|+++++. +...... .....+++|
T Consensus 56 ~~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~-~~~~~~~--~l~~~~~~L 132 (594)
T 2p1m_B 56 VSPATVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMV-VTDDCLE--LIAKSFKNF 132 (594)
T ss_dssp SCHHHHHHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCB-CCHHHHH--HHHHHCTTC
T ss_pred cCHHHHHhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcE-EcHHHHH--HHHHhCCCC
Confidence 345666677777888888777 554332100 000 0011246777777777763 3221100 001246777
Q ss_pred cEEEEecCCCcceec-CCcccccccccEEEeeccc
Q 038204 79 EILRVYCCQNLIVLL-PSSSVSFRNLTDLQVWGCK 112 (254)
Q Consensus 79 ~~L~l~~C~~L~~l~-p~~~~~~~~L~~L~i~~C~ 112 (254)
++|++.+|..+.... +.....+++|++|++++|.
T Consensus 133 ~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~ 167 (594)
T 2p1m_B 133 KVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESD 167 (594)
T ss_dssp CEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCE
T ss_pred cEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCc
Confidence 788777776554311 1112245666666666554
No 90
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=98.91 E-value=1.5e-08 Score=80.48 Aligned_cols=134 Identities=20% Similarity=0.098 Sum_probs=93.4
Q ss_pred CCCcccEEeccCCcccccccccCCccccCCCCccEEEEecCCCcceecCCcccccccccEEEeeccccccccccchhhcc
Q 038204 46 KFSQVKHLQPYKLNDLKQLWKQGSKLDFIFTNLEILRVYCCQNLIVLLPSSSVSFRNLTDLQVWGCKELMKLVTSSTAKS 125 (254)
Q Consensus 46 ~~~~L~~L~L~~~~~L~~l~~~~~~~~~~~~~L~~L~l~~C~~L~~l~p~~~~~~~~L~~L~i~~C~~L~~l~~~~~~~~ 125 (254)
..++|++|++.+. .++.+... ....+++|++|+++++ +++.+.+..+..+++|++|+++++ +++.++. .....
T Consensus 26 ~~~~l~~L~l~~n-~l~~~~~~---~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~-~~~~~ 98 (208)
T 2o6s_A 26 IPAQTTYLDLETN-SLKSLPNG---VFDELTSLTQLYLGGN-KLQSLPNGVFNKLTSLTYLNLSTN-QLQSLPN-GVFDK 98 (208)
T ss_dssp CCTTCSEEECCSS-CCCCCCTT---TTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCCCCCT-TTTTT
T ss_pred CCCCCcEEEcCCC-ccCcCChh---hhcccccCcEEECCCC-ccCccChhhcCCCCCcCEEECCCC-cCCccCH-hHhcC
Confidence 3678999999886 45554221 2356889999999986 677775544567899999999887 4555543 34567
Q ss_pred ccccceeEEecCCCceeEeecCCCCccccccccccceeecccccccceecCCCccccCCCcCeEEEeCCC
Q 038204 126 LVRLRIMKVCGSRAMTQVVTSEKDGAEDEIVFSNLKALTLLDLDSLTSFCSGNYTFKFPSLRDLEVIGCP 195 (254)
Q Consensus 126 l~~L~~L~i~~C~~l~~i~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~~sL~~L~i~~Cp 195 (254)
+++|++|+++++. +..++. .....+++|+.|++.++ +++.++... ...+++|++|++.+++
T Consensus 99 l~~L~~L~L~~N~-l~~~~~------~~~~~l~~L~~L~l~~N-~l~~~~~~~-~~~l~~L~~L~l~~N~ 159 (208)
T 2o6s_A 99 LTQLKELALNTNQ-LQSLPD------GVFDKLTQLKDLRLYQN-QLKSVPDGV-FDRLTSLQYIWLHDNP 159 (208)
T ss_dssp CTTCCEEECCSSC-CCCCCT------TTTTTCTTCCEEECCSS-CCSCCCTTT-TTTCTTCCEEECCSCC
T ss_pred ccCCCEEEcCCCc-CcccCH------hHhccCCcCCEEECCCC-ccceeCHHH-hccCCCccEEEecCCC
Confidence 8899999998874 443332 12345788999999886 666665532 2457889999998864
No 91
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=98.90 E-value=1.2e-08 Score=81.93 Aligned_cols=83 Identities=14% Similarity=0.215 Sum_probs=37.9
Q ss_pred CcccEEeccCCcccccccccCCccccCCCCccEEEEecCCCcceecCCcccccccccEEEeeccccccccccchhhcccc
Q 038204 48 SQVKHLQPYKLNDLKQLWKQGSKLDFIFTNLEILRVYCCQNLIVLLPSSSVSFRNLTDLQVWGCKELMKLVTSSTAKSLV 127 (254)
Q Consensus 48 ~~L~~L~L~~~~~L~~l~~~~~~~~~~~~~L~~L~l~~C~~L~~l~p~~~~~~~~L~~L~i~~C~~L~~l~~~~~~~~l~ 127 (254)
++|+.|.+.+. .++.+... ....+++|++|+++++ ++..+.|..+..+++|++|+++++ +++.++. .....++
T Consensus 32 ~~l~~L~l~~n-~i~~i~~~---~~~~l~~L~~L~Ls~N-~i~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~-~~f~~l~ 104 (220)
T 2v9t_B 32 ETITEIRLEQN-TIKVIPPG---AFSPYKKLRRIDLSNN-QISELAPDAFQGLRSLNSLVLYGN-KITELPK-SLFEGLF 104 (220)
T ss_dssp TTCCEEECCSS-CCCEECTT---SSTTCTTCCEEECCSS-CCCEECTTTTTTCSSCCEEECCSS-CCCCCCT-TTTTTCT
T ss_pred cCCCEEECCCC-cCCCcCHh---HhhCCCCCCEEECCCC-cCCCcCHHHhhCCcCCCEEECCCC-cCCccCH-hHccCCC
Confidence 45555555443 23333211 1233455555555554 344443444455555555555554 2333322 2234455
Q ss_pred ccceeEEecC
Q 038204 128 RLRIMKVCGS 137 (254)
Q Consensus 128 ~L~~L~i~~C 137 (254)
+|+.|+++++
T Consensus 105 ~L~~L~L~~N 114 (220)
T 2v9t_B 105 SLQLLLLNAN 114 (220)
T ss_dssp TCCEEECCSS
T ss_pred CCCEEECCCC
Confidence 5555555554
No 92
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=98.89 E-value=1.6e-08 Score=81.24 Aligned_cols=151 Identities=15% Similarity=0.142 Sum_probs=80.0
Q ss_pred cEEEEecccceEecCCCCccccccCCCCcccEEeccCCcccccccccCCccccCCCCccEEEEecCCCcceecCCccccc
Q 038204 21 EILYLSRTSYTEILSNEGHSEKHVGKFSQVKHLQPYKLNDLKQLWKQGSKLDFIFTNLEILRVYCCQNLIVLLPSSSVSF 100 (254)
Q Consensus 21 ~~L~l~~c~l~~l~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~l~~~~~~~~~~~~~L~~L~l~~C~~L~~l~p~~~~~~ 100 (254)
+.++++++.+++++. ...+.+++|.+++. .++.+... .....+++|++|+++++ +++.+.+..+..+
T Consensus 14 ~~l~~s~n~l~~iP~---------~~~~~~~~L~L~~N-~l~~~~~~--~~~~~l~~L~~L~L~~N-~i~~i~~~~~~~l 80 (220)
T 2v70_A 14 TTVDCSNQKLNKIPE---------HIPQYTAELRLNNN-EFTVLEAT--GIFKKLPQLRKINFSNN-KITDIEEGAFEGA 80 (220)
T ss_dssp TEEECCSSCCSSCCS---------CCCTTCSEEECCSS-CCCEECCC--CCGGGCTTCCEEECCSS-CCCEECTTTTTTC
T ss_pred CEeEeCCCCcccCcc---------CCCCCCCEEEcCCC-cCCccCch--hhhccCCCCCEEECCCC-cCCEECHHHhCCC
Confidence 356666665555543 11345667777664 34443111 11345667777777665 3556544446667
Q ss_pred ccccEEEeeccccccccccchhhccccccceeEEecCCCceeEeecCCCCccccccccccceeecccccccceecCCCcc
Q 038204 101 RNLTDLQVWGCKELMKLVTSSTAKSLVRLRIMKVCGSRAMTQVVTSEKDGAEDEIVFSNLKALTLLDLDSLTSFCSGNYT 180 (254)
Q Consensus 101 ~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~C~~l~~i~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~ 180 (254)
++|++|+++++. ++.+++ .....+++|++|+++++. +..+.. .....+++|+.|++.++ +++.+.... .
T Consensus 81 ~~L~~L~Ls~N~-l~~~~~-~~~~~l~~L~~L~Ls~N~-l~~~~~------~~~~~l~~L~~L~L~~N-~l~~~~~~~-~ 149 (220)
T 2v70_A 81 SGVNEILLTSNR-LENVQH-KMFKGLESLKTLMLRSNR-ITCVGN------DSFIGLSSVRLLSLYDN-QITTVAPGA-F 149 (220)
T ss_dssp TTCCEEECCSSC-CCCCCG-GGGTTCSSCCEEECTTSC-CCCBCT------TSSTTCTTCSEEECTTS-CCCCBCTTT-T
T ss_pred CCCCEEECCCCc-cCccCH-hHhcCCcCCCEEECCCCc-CCeECH------hHcCCCccCCEEECCCC-cCCEECHHH-h
Confidence 777777777663 444432 234566777777776664 332221 12234566666666654 455543321 2
Q ss_pred ccCCCcCeEEEeCCC
Q 038204 181 FKFPSLRDLEVIGCP 195 (254)
Q Consensus 181 ~~~~sL~~L~i~~Cp 195 (254)
..+++|+.|++.+.|
T Consensus 150 ~~l~~L~~L~L~~N~ 164 (220)
T 2v70_A 150 DTLHSLSTLNLLANP 164 (220)
T ss_dssp TTCTTCCEEECCSCC
T ss_pred cCCCCCCEEEecCcC
Confidence 345566666665543
No 93
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=98.89 E-value=4.3e-09 Score=93.91 Aligned_cols=35 Identities=20% Similarity=0.084 Sum_probs=21.6
Q ss_pred HhhCCCCcEEEEecccceEecCCCCccccccCCCCcccEEeccC
Q 038204 14 LEKFRNLEILYLSRTSYTEILSNEGHSEKHVGKFSQVKHLQPYK 57 (254)
Q Consensus 14 ~~~l~~L~~L~l~~c~l~~l~~~~~~~~~~~~~~~~L~~L~L~~ 57 (254)
+..+++|+.|++++|.++.++ ++.+++|++|.+.+
T Consensus 166 ~~~l~~L~~L~ls~n~l~~l~---------l~~l~~L~~L~l~~ 200 (457)
T 3bz5_A 166 VTPQTQLTTLDCSFNKITELD---------VSQNKLLNRLNCDT 200 (457)
T ss_dssp CTTCTTCCEEECCSSCCCCCC---------CTTCTTCCEEECCS
T ss_pred cccCCcCCEEECCCCccceec---------cccCCCCCEEECcC
Confidence 346788888888888666543 22355555555544
No 94
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=98.88 E-value=9e-09 Score=88.88 Aligned_cols=188 Identities=18% Similarity=0.136 Sum_probs=125.4
Q ss_pred cEEEEecccceEecCCCCccccccCCCCcccEEeccCCcccccccccCCccccCCCCccEEEEecCCCcceecCCccccc
Q 038204 21 EILYLSRTSYTEILSNEGHSEKHVGKFSQVKHLQPYKLNDLKQLWKQGSKLDFIFTNLEILRVYCCQNLIVLLPSSSVSF 100 (254)
Q Consensus 21 ~~L~l~~c~l~~l~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~l~~~~~~~~~~~~~L~~L~l~~C~~L~~l~p~~~~~~ 100 (254)
+.++.++++++.++. +..+.++.|+|++. +++.+....+ ...+++|++|+++++ ++..+.+..+..+
T Consensus 21 ~~l~c~~~~l~~iP~---------~~~~~l~~L~Ls~N-~l~~l~~~~~--~~~l~~L~~L~L~~N-~i~~i~~~~~~~l 87 (361)
T 2xot_A 21 NILSCSKQQLPNVPQ---------SLPSYTALLDLSHN-NLSRLRAEWT--PTRLTNLHSLLLSHN-HLNFISSEAFVPV 87 (361)
T ss_dssp TEEECCSSCCSSCCS---------SCCTTCSEEECCSS-CCCEECTTSS--SSCCTTCCEEECCSS-CCCEECTTTTTTC
T ss_pred CEEEeCCCCcCccCc---------cCCCCCCEEECCCC-CCCccChhhh--hhcccccCEEECCCC-cCCccChhhccCC
Confidence 466666666666654 12566899999875 5666533211 126889999999986 6777766667889
Q ss_pred ccccEEEeeccccccccccchhhccccccceeEEecCCCceeEeecCCCCccccccccccceeecccccccceecCCCcc
Q 038204 101 RNLTDLQVWGCKELMKLVTSSTAKSLVRLRIMKVCGSRAMTQVVTSEKDGAEDEIVFSNLKALTLLDLDSLTSFCSGNYT 180 (254)
Q Consensus 101 ~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~C~~l~~i~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~ 180 (254)
++|++|+++++. ++.++. .....+++|+.|+++++. +..+.. .....+++|+.|++.++ +++.++.....
T Consensus 88 ~~L~~L~Ls~N~-l~~~~~-~~~~~l~~L~~L~L~~N~-i~~~~~------~~~~~l~~L~~L~L~~N-~l~~l~~~~~~ 157 (361)
T 2xot_A 88 PNLRYLDLSSNH-LHTLDE-FLFSDLQALEVLLLYNNH-IVVVDR------NAFEDMAQLQKLYLSQN-QISRFPVELIK 157 (361)
T ss_dssp TTCCEEECCSSC-CCEECT-TTTTTCTTCCEEECCSSC-CCEECT------TTTTTCTTCCEEECCSS-CCCSCCGGGTC
T ss_pred CCCCEEECCCCc-CCcCCH-HHhCCCcCCCEEECCCCc-ccEECH------HHhCCcccCCEEECCCC-cCCeeCHHHhc
Confidence 999999999874 666643 346788999999999986 544432 13446789999999986 77777653211
Q ss_pred --ccCCCcCeEEEeCCCCCcccCCCCC-CCC----CeEEEeeCCCCCcccccccHHHHHHHHH
Q 038204 181 --FKFPSLRDLEVIGCPKMKIFTTGEL-CTP----PRVNVWYGEGDGECRWANDLNVTIQELH 236 (254)
Q Consensus 181 --~~~~sL~~L~i~~Cp~L~~lp~~~~-~~~----~~~~i~~~~~~~~~~~~~d~~~~i~~~~ 236 (254)
..+++|+.|+++++ +++.+|.... ..+ ..+.+ .+..|.+++++...++.|.
T Consensus 158 ~~~~l~~L~~L~L~~N-~l~~l~~~~~~~l~~~~l~~l~l----~~N~~~C~C~l~~~~~~~~ 215 (361)
T 2xot_A 158 DGNKLPKLMLLDLSSN-KLKKLPLTDLQKLPAWVKNGLYL----HNNPLECDCKLYQLFSHWQ 215 (361)
T ss_dssp ----CTTCCEEECCSS-CCCCCCHHHHHHSCHHHHTTEEC----CSSCEECCHHHHHHHHHHH
T ss_pred CcccCCcCCEEECCCC-CCCccCHHHhhhccHhhcceEEe----cCCCccCCcCcHHHHHHHH
Confidence 35789999999987 5777764322 122 13555 4567777777654445444
No 95
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=98.88 E-value=1.4e-08 Score=93.17 Aligned_cols=137 Identities=16% Similarity=0.103 Sum_probs=78.5
Q ss_pred CCCcEEEEecccceEecCCCCccccccCCCCcccEEeccCCcccccccccCCccccCCCCccEEEEecCCCcceecCCcc
Q 038204 18 RNLEILYLSRTSYTEILSNEGHSEKHVGKFSQVKHLQPYKLNDLKQLWKQGSKLDFIFTNLEILRVYCCQNLIVLLPSSS 97 (254)
Q Consensus 18 ~~L~~L~l~~c~l~~l~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~l~~~~~~~~~~~~~L~~L~l~~C~~L~~l~p~~~ 97 (254)
+++++|+|+++.++.+++. ..+.+++|++|+|+++ +++.+..+. ...+++|++|+++++ +++.+.+..+
T Consensus 52 ~~~~~LdLs~N~i~~l~~~------~f~~l~~L~~L~Ls~N-~i~~i~~~~---f~~L~~L~~L~Ls~N-~l~~l~~~~f 120 (635)
T 4g8a_A 52 FSTKNLDLSFNPLRHLGSY------SFFSFPELQVLDLSRC-EIQTIEDGA---YQSLSHLSTLILTGN-PIQSLALGAF 120 (635)
T ss_dssp TTCCEEECTTSCCCEECTT------TTTTCTTCCEEECTTC-CCCEECTTT---TTTCTTCCEEECTTC-CCCEECGGGG
T ss_pred cCCCEEEeeCCCCCCCCHH------HHhCCCCCCEEECCCC-cCCCcChhH---hcCCCCCCEEEccCC-cCCCCCHHHh
Confidence 3677777777777766541 2445777777777665 455543221 344677777777776 4666644445
Q ss_pred cccccccEEEeeccccccccccchhhccccccceeEEecCCCceeEeecCCCCccccccccccceeeccccccccee
Q 038204 98 VSFRNLTDLQVWGCKELMKLVTSSTAKSLVRLRIMKVCGSRAMTQVVTSEKDGAEDEIVFSNLKALTLLDLDSLTSF 174 (254)
Q Consensus 98 ~~~~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~C~~l~~i~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~ 174 (254)
..+++|++|+++++ +++.++. ...+++++|++|+++++. +..+.. ......+++|+.|++.++ +++.+
T Consensus 121 ~~L~~L~~L~Ls~N-~l~~l~~-~~~~~L~~L~~L~Ls~N~-l~~~~~-----~~~~~~l~~L~~L~L~~N-~l~~~ 188 (635)
T 4g8a_A 121 SGLSSLQKLVAVET-NLASLEN-FPIGHLKTLKELNVAHNL-IQSFKL-----PEYFSNLTNLEHLDLSSN-KIQSI 188 (635)
T ss_dssp TTCTTCCEEECTTS-CCCCSTT-CCCTTCTTCCEEECCSSC-CCCCCC-----CGGGGGCTTCCEEECCSS-CCCEE
T ss_pred cCCCCCCEEECCCC-cCCCCCh-hhhhcCcccCeeccccCc-cccCCC-----chhhccchhhhhhcccCc-ccccc
Confidence 66777777777776 3554432 234567777777777664 222110 012234566666666654 34333
No 96
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=98.87 E-value=5e-10 Score=102.47 Aligned_cols=117 Identities=20% Similarity=0.104 Sum_probs=64.7
Q ss_pred CCCccEEEEec---CCCcceec-----CCcccccccccEEEeecccc-ccccccchhhccccccceeEEecCCCceeEee
Q 038204 75 FTNLEILRVYC---CQNLIVLL-----PSSSVSFRNLTDLQVWGCKE-LMKLVTSSTAKSLVRLRIMKVCGSRAMTQVVT 145 (254)
Q Consensus 75 ~~~L~~L~l~~---C~~L~~l~-----p~~~~~~~~L~~L~i~~C~~-L~~l~~~~~~~~l~~L~~L~i~~C~~l~~i~~ 145 (254)
+++|++|++.+ |+++++.+ +..+..+++|++|++++|.+ +.+.........+++|+.|++++|. +...
T Consensus 402 ~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~-l~~~-- 478 (592)
T 3ogk_B 402 LKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVG-ESDE-- 478 (592)
T ss_dssp CCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCC-SSHH--
T ss_pred CCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCC-CCHH--
Confidence 55666666653 44444320 11123466666666666553 3333222334456667777776664 2110
Q ss_pred cCCCCccccccccccceeecccccccceecCCCccccCCCcCeEEEeCCCCCcc
Q 038204 146 SEKDGAEDEIVFSNLKALTLLDLDSLTSFCSGNYTFKFPSLRDLEVIGCPKMKI 199 (254)
Q Consensus 146 ~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~~sL~~L~i~~Cp~L~~ 199 (254)
+.......+++|++|++++|+ ++.-........+++|++|++++|. ++.
T Consensus 479 ---~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~ls~n~-it~ 527 (592)
T 3ogk_B 479 ---GLMEFSRGCPNLQKLEMRGCC-FSERAIAAAVTKLPSLRYLWVQGYR-ASM 527 (592)
T ss_dssp ---HHHHHHTCCTTCCEEEEESCC-CBHHHHHHHHHHCSSCCEEEEESCB-CCT
T ss_pred ---HHHHHHhcCcccCeeeccCCC-CcHHHHHHHHHhcCccCeeECcCCc-CCH
Confidence 000112357899999999997 5432221122468999999999997 544
No 97
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=98.87 E-value=1.8e-08 Score=96.30 Aligned_cols=168 Identities=15% Similarity=0.124 Sum_probs=109.9
Q ss_pred echHHHhhCCCCcEEEEecc-cceEecCCCCccccccCCCCcccEEeccCCcccccccccCCccccCCCCccEEEEecCC
Q 038204 9 FPLGLLEKFRNLEILYLSRT-SYTEILSNEGHSEKHVGKFSQVKHLQPYKLNDLKQLWKQGSKLDFIFTNLEILRVYCCQ 87 (254)
Q Consensus 9 ~P~~~~~~l~~L~~L~l~~c-~l~~l~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~l~~~~~~~~~~~~~L~~L~l~~C~ 87 (254)
+++..+.++++|++|++++| ....+.+ ..++.+++|++|+|+++. +..+.. .....+++|++|++++|.
T Consensus 39 i~~~~~~~l~~L~~LdLs~n~~~~~i~~------~~f~~L~~L~~L~Ls~N~-l~~~~p---~~~~~l~~L~~L~Ls~n~ 108 (844)
T 3j0a_A 39 VTASSFPFLEQLQLLELGSQYTPLTIDK------EAFRNLPNLRILDLGSSK-IYFLHP---DAFQGLFHLFELRLYFCG 108 (844)
T ss_dssp ECSSSCSSCCSCSEEEECTTCCCCEECT------TTTSSCTTCCEEECTTCC-CCEECT---TSSCSCSSCCCEECTTCC
T ss_pred cChhHCcccccCeEEeCCCCCCccccCH------HHhcCCCCCCEEECCCCc-CcccCH---hHccCCcccCEeeCcCCC
Confidence 33333568999999999999 6666643 235679999999998863 454422 235678999999999984
Q ss_pred CcceecCC--cccccccccEEEeeccccccccccchhhccccccceeEEecCCCceeEeecCCCCccccccc--ccccee
Q 038204 88 NLIVLLPS--SSVSFRNLTDLQVWGCKELMKLVTSSTAKSLVRLRIMKVCGSRAMTQVVTSEKDGAEDEIVF--SNLKAL 163 (254)
Q Consensus 88 ~L~~l~p~--~~~~~~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~C~~l~~i~~~~~~~~~~~~~~--~~L~~L 163 (254)
+....|. .+..+++|++|+++++. ++.+.+....+++++|++|+++++. +..+.. .....+ ++|+.|
T Consensus 109 -l~~~~~~~~~~~~L~~L~~L~Ls~N~-l~~~~~~~~~~~L~~L~~L~Ls~N~-i~~~~~------~~l~~l~~~~L~~L 179 (844)
T 3j0a_A 109 -LSDAVLKDGYFRNLKALTRLDLSKNQ-IRSLYLHPSFGKLNSLKSIDFSSNQ-IFLVCE------HELEPLQGKTLSFF 179 (844)
T ss_dssp -CSSCCSTTCCCSSCSSCCEEEEESCC-CCCCCCCGGGGTCSSCCEEEEESSC-CCCCCS------GGGHHHHHCSSCCC
T ss_pred -CCcccccCccccccCCCCEEECCCCc-ccccccchhHhhCCCCCEEECCCCc-CCeeCH------HHcccccCCccceE
Confidence 4432233 26789999999999985 4455444567899999999999975 322211 122233 788888
Q ss_pred ecccccccceecCCC--c--cccCCCcCeEEEeCCC
Q 038204 164 TLLDLDSLTSFCSGN--Y--TFKFPSLRDLEVIGCP 195 (254)
Q Consensus 164 ~l~~c~~L~~~~~~~--~--~~~~~sL~~L~i~~Cp 195 (254)
++.++.--...+... . .....+|+.|++++|.
T Consensus 180 ~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~ 215 (844)
T 3j0a_A 180 SLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNG 215 (844)
T ss_dssp EECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCC
T ss_pred ECCCCccccccccchhhcCCccccCceeEEecCCCc
Confidence 888763322222210 0 0111248888888873
No 98
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=98.86 E-value=6.5e-09 Score=79.70 Aligned_cols=139 Identities=17% Similarity=0.102 Sum_probs=97.3
Q ss_pred CCCCcEEEEecccce--EecCCCCccccccCCCCcccEEeccCCcccccccccCCccccCCCCccEEEEecCCCcceecC
Q 038204 17 FRNLEILYLSRTSYT--EILSNEGHSEKHVGKFSQVKHLQPYKLNDLKQLWKQGSKLDFIFTNLEILRVYCCQNLIVLLP 94 (254)
Q Consensus 17 l~~L~~L~l~~c~l~--~l~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~l~~~~~~~~~~~~~L~~L~l~~C~~L~~l~p 94 (254)
.++|+.|++++|.+. .++. .++.+++|++|++.++. ++.+ .....+++|++|++++|. +....|
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~-------~~~~l~~L~~L~l~~n~-l~~~-----~~~~~l~~L~~L~Ls~N~-l~~~~~ 88 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEG-------LTAEFVNLEFLSLINVG-LISV-----SNLPKLPKLKKLELSENR-IFGGLD 88 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSS-------CCGGGGGCCEEEEESSC-CCCC-----SSCCCCSSCCEEEEESCC-CCSCCC
T ss_pred cccCCEEECCCCCCChhhHHH-------HHHhCCCCCEEeCcCCC-CCCh-----hhhccCCCCCEEECcCCc-CchHHH
Confidence 578999999999776 5544 24568999999998874 6554 225668999999999875 554335
Q ss_pred CcccccccccEEEeeccccccccccchhhccccccceeEEecCCCceeEeecCCCCccccccccccceeeccccccccee
Q 038204 95 SSSVSFRNLTDLQVWGCKELMKLVTSSTAKSLVRLRIMKVCGSRAMTQVVTSEKDGAEDEIVFSNLKALTLLDLDSLTSF 174 (254)
Q Consensus 95 ~~~~~~~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~C~~l~~i~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~ 174 (254)
..+..+++|+.|++++| .++.++.......+++|+.|++++|. +..++.. .......+++|+.|++.++ .++.+
T Consensus 89 ~~~~~l~~L~~L~Ls~N-~l~~~~~~~~l~~l~~L~~L~l~~N~-l~~~~~~---~~~~~~~l~~L~~L~l~~n-~~~~~ 162 (168)
T 2ell_A 89 MLAEKLPNLTHLNLSGN-KLKDISTLEPLKKLECLKSLDLFNCE-VTNLNDY---RESVFKLLPQLTYLDGYDR-EDQEA 162 (168)
T ss_dssp HHHHHCTTCCEEECBSS-SCCSSGGGGGGSSCSCCCEEECCSSG-GGTSTTH---HHHHHTTCSSCCEETTEET-TSCBC
T ss_pred HHHhhCCCCCEEeccCC-ccCcchhHHHHhcCCCCCEEEeeCCc-CcchHHH---HHHHHHhCccCcEecCCCC-Chhhc
Confidence 54556999999999988 57776544567788999999999985 3222110 0012345789999999887 34444
Q ss_pred c
Q 038204 175 C 175 (254)
Q Consensus 175 ~ 175 (254)
+
T Consensus 163 ~ 163 (168)
T 2ell_A 163 P 163 (168)
T ss_dssp C
T ss_pred c
Confidence 4
No 99
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=98.85 E-value=1.3e-09 Score=82.05 Aligned_cols=58 Identities=17% Similarity=0.252 Sum_probs=24.2
Q ss_pred CCCccEEEEecCCCcceecCCcccccccccEEEeeccccccccccchhhccccccceeEEecC
Q 038204 75 FTNLEILRVYCCQNLIVLLPSSSVSFRNLTDLQVWGCKELMKLVTSSTAKSLVRLRIMKVCGS 137 (254)
Q Consensus 75 ~~~L~~L~l~~C~~L~~l~p~~~~~~~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~C 137 (254)
+++|++|++++| +++.+ +. +..+++|+.|++++|. ++... ......+++|++|+++++
T Consensus 41 l~~L~~L~l~~n-~l~~~-~~-~~~l~~L~~L~Ls~n~-i~~~~-~~~~~~l~~L~~L~ls~N 98 (149)
T 2je0_A 41 FEELEFLSTINV-GLTSI-AN-LPKLNKLKKLELSDNR-VSGGL-EVLAEKCPNLTHLNLSGN 98 (149)
T ss_dssp CTTCCEEECTTS-CCCCC-TT-CCCCTTCCEEECCSSC-CCSCT-HHHHHHCTTCCEEECTTS
T ss_pred cCCCcEEECcCC-CCCCc-hh-hhcCCCCCEEECCCCc-ccchH-HHHhhhCCCCCEEECCCC
Confidence 444444444443 23333 21 3444555555555443 22211 122333555555555554
No 100
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=98.84 E-value=9.2e-09 Score=93.84 Aligned_cols=158 Identities=14% Similarity=0.157 Sum_probs=114.1
Q ss_pred hhCCCCcEEEEecccceEecCCCCccccccCCCCcccEEeccCCcccccccccCCccccCCCCccEEEEecCCCcceecC
Q 038204 15 EKFRNLEILYLSRTSYTEILSNEGHSEKHVGKFSQVKHLQPYKLNDLKQLWKQGSKLDFIFTNLEILRVYCCQNLIVLLP 94 (254)
Q Consensus 15 ~~l~~L~~L~l~~c~l~~l~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~l~~~~~~~~~~~~~L~~L~l~~C~~L~~l~p 94 (254)
..+++|++|++++|.+....+ ..++.+++|++|++.++ .++.+.. .+.....+++|++|+++++.--..+.+
T Consensus 350 ~~l~~L~~L~l~~n~l~~~~~------~~~~~l~~L~~L~L~~N-~l~~~~~-~~~~~~~l~~L~~L~l~~N~l~~~~~~ 421 (562)
T 3a79_B 350 PSPSSFTFLNFTQNVFTDSVF------QGCSTLKRLQTLILQRN-GLKNFFK-VALMTKNMSSLETLDVSLNSLNSHAYD 421 (562)
T ss_dssp SSCCCCCEEECCSSCCCTTTT------TTCCSCSSCCEEECCSS-CCCBTTH-HHHTTTTCTTCCEEECTTSCCBSCCSS
T ss_pred cCCCCceEEECCCCccccchh------hhhcccCCCCEEECCCC-CcCCccc-chhhhcCCCCCCEEECCCCcCCCccCh
Confidence 578999999999997765322 13567999999999886 4554311 011245689999999999853332533
Q ss_pred CcccccccccEEEeeccccccccccchhhccc-cccceeEEecCCCceeEeecCCCCccccccccccceeecccccccce
Q 038204 95 SSSVSFRNLTDLQVWGCKELMKLVTSSTAKSL-VRLRIMKVCGSRAMTQVVTSEKDGAEDEIVFSNLKALTLLDLDSLTS 173 (254)
Q Consensus 95 ~~~~~~~~L~~L~i~~C~~L~~l~~~~~~~~l-~~L~~L~i~~C~~l~~i~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~ 173 (254)
..+..+++|+.|++++|. ++.. ....+ ++|+.|+++++ ++..++. ....+++|+.|++.++ +++.
T Consensus 422 ~~~~~l~~L~~L~l~~n~-l~~~----~~~~l~~~L~~L~L~~N-~l~~ip~-------~~~~l~~L~~L~L~~N-~l~~ 487 (562)
T 3a79_B 422 RTCAWAESILVLNLSSNM-LTGS----VFRCLPPKVKVLDLHNN-RIMSIPK-------DVTHLQALQELNVASN-QLKS 487 (562)
T ss_dssp CCCCCCTTCCEEECCSSC-CCGG----GGSSCCTTCSEEECCSS-CCCCCCT-------TTTSSCCCSEEECCSS-CCCC
T ss_pred hhhcCcccCCEEECCCCC-CCcc----hhhhhcCcCCEEECCCC-cCcccCh-------hhcCCCCCCEEECCCC-CCCC
Confidence 346678999999999986 4322 22334 68999999999 4665543 3336899999999986 7888
Q ss_pred ecCCCccccCCCcCeEEEeCCC
Q 038204 174 FCSGNYTFKFPSLRDLEVIGCP 195 (254)
Q Consensus 174 ~~~~~~~~~~~sL~~L~i~~Cp 195 (254)
++.. ....+++|+.|+++++|
T Consensus 488 l~~~-~~~~l~~L~~L~l~~N~ 508 (562)
T 3a79_B 488 VPDG-VFDRLTSLQYIWLHDNP 508 (562)
T ss_dssp CCTT-STTTCTTCCCEECCSCC
T ss_pred CCHH-HHhcCCCCCEEEecCCC
Confidence 8765 23578999999999886
No 101
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=98.84 E-value=4.8e-09 Score=100.45 Aligned_cols=164 Identities=13% Similarity=0.054 Sum_probs=101.1
Q ss_pred echHH-HhhCCCCcEEEEecccc-eEecCCCCccccccCCCCcccEEeccCCccccc--cccc--CC-ccccCCCCccEE
Q 038204 9 FPLGL-LEKFRNLEILYLSRTSY-TEILSNEGHSEKHVGKFSQVKHLQPYKLNDLKQ--LWKQ--GS-KLDFIFTNLEIL 81 (254)
Q Consensus 9 ~P~~~-~~~l~~L~~L~l~~c~l-~~l~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~--l~~~--~~-~~~~~~~~L~~L 81 (254)
+|..+ +.++++|++|++++|.+ ..++. .++.+++|+.|+|+++..++. ++.. .. .....+++|+.|
T Consensus 481 iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~-------~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L 553 (876)
T 4ecn_A 481 ENEELSWSNLKDLTDVELYNCPNMTQLPD-------FLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIF 553 (876)
T ss_dssp TTSCCCGGGCTTCCEEEEESCTTCCSCCG-------GGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEE
T ss_pred CChhhhhccCCCCCEEECcCCCCCccChH-------HHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEE
Confidence 66665 34899999999999954 33332 366789999999988764443 2111 00 012456688888
Q ss_pred EEecCCCcceecCC--cccccccccEEEeeccccccccccchhhccccccceeEEecCCCceeEeecCCCCccccccccc
Q 038204 82 RVYCCQNLIVLLPS--SSVSFRNLTDLQVWGCKELMKLVTSSTAKSLVRLRIMKVCGSRAMTQVVTSEKDGAEDEIVFSN 159 (254)
Q Consensus 82 ~l~~C~~L~~l~p~--~~~~~~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~C~~l~~i~~~~~~~~~~~~~~~~ 159 (254)
+++++. +..+ |. .+..+++|+.|+++++. ++.++ ....+++|+.|+++++. +..++. ....+++
T Consensus 554 ~Ls~N~-L~~i-p~~~~l~~L~~L~~L~Ls~N~-l~~lp---~~~~L~~L~~L~Ls~N~-l~~lp~-------~l~~l~~ 619 (876)
T 4ecn_A 554 YMGYNN-LEEF-PASASLQKMVKLGLLDCVHNK-VRHLE---AFGTNVKLTDLKLDYNQ-IEEIPE-------DFCAFTD 619 (876)
T ss_dssp ECCSSC-CCBC-CCHHHHTTCTTCCEEECTTSC-CCBCC---CCCTTSEESEEECCSSC-CSCCCT-------TSCEECT
T ss_pred EeeCCc-CCcc-CChhhhhcCCCCCEEECCCCC-cccch---hhcCCCcceEEECcCCc-cccchH-------HHhhccc
Confidence 888874 4465 55 57788888888888775 44443 45677888888888775 333332 2334566
Q ss_pred -cceeecccccccceecCCCccccCCCcCeEEEeCC
Q 038204 160 -LKALTLLDLDSLTSFCSGNYTFKFPSLRDLEVIGC 194 (254)
Q Consensus 160 -L~~L~l~~c~~L~~~~~~~~~~~~~sL~~L~i~~C 194 (254)
|+.|++.++ +++.++........++|+.|++++|
T Consensus 620 ~L~~L~Ls~N-~L~~lp~~~~~~~~~~L~~L~Ls~N 654 (876)
T 4ecn_A 620 QVEGLGFSHN-KLKYIPNIFNAKSVYVMGSVDFSYN 654 (876)
T ss_dssp TCCEEECCSS-CCCSCCSCCCTTCSSCEEEEECCSS
T ss_pred cCCEEECcCC-CCCcCchhhhccccCCCCEEECcCC
Confidence 777777665 3444443211112233555555555
No 102
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.83 E-value=5.1e-09 Score=81.07 Aligned_cols=107 Identities=16% Similarity=0.103 Sum_probs=60.6
Q ss_pred hCCCCcEEEEecccceEecCCCCccccccCC-CCcccEEeccCCcccccccccCCccccCCCCccEEEEecCCCcceecC
Q 038204 16 KFRNLEILYLSRTSYTEILSNEGHSEKHVGK-FSQVKHLQPYKLNDLKQLWKQGSKLDFIFTNLEILRVYCCQNLIVLLP 94 (254)
Q Consensus 16 ~l~~L~~L~l~~c~l~~l~~~~~~~~~~~~~-~~~L~~L~L~~~~~L~~l~~~~~~~~~~~~~L~~L~l~~C~~L~~l~p 94 (254)
.+.+|+.|++++|.++.+.. +.. .++|+.|+++++ .++.+ .....+++|++|+++++ .++.+.+
T Consensus 17 ~~~~L~~L~l~~n~l~~i~~--------~~~~~~~L~~L~Ls~N-~l~~~-----~~l~~l~~L~~L~Ls~N-~l~~~~~ 81 (176)
T 1a9n_A 17 NAVRDRELDLRGYKIPVIEN--------LGATLDQFDAIDFSDN-EIRKL-----DGFPLLRRLKTLLVNNN-RICRIGE 81 (176)
T ss_dssp CTTSCEEEECTTSCCCSCCC--------GGGGTTCCSEEECCSS-CCCEE-----CCCCCCSSCCEEECCSS-CCCEECS
T ss_pred CcCCceEEEeeCCCCchhHH--------hhhcCCCCCEEECCCC-CCCcc-----cccccCCCCCEEECCCC-cccccCc
Confidence 35677777777776654422 222 347777777665 34443 11345667777777765 3555533
Q ss_pred CcccccccccEEEeeccccccccccchhhccccccceeEEecCC
Q 038204 95 SSSVSFRNLTDLQVWGCKELMKLVTSSTAKSLVRLRIMKVCGSR 138 (254)
Q Consensus 95 ~~~~~~~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~C~ 138 (254)
..+..+++|+.|+++++. ++.++.......+++|+.|++++++
T Consensus 82 ~~~~~l~~L~~L~L~~N~-i~~~~~~~~l~~l~~L~~L~l~~N~ 124 (176)
T 1a9n_A 82 GLDQALPDLTELILTNNS-LVELGDLDPLASLKSLTYLCILRNP 124 (176)
T ss_dssp CHHHHCTTCCEEECCSCC-CCCGGGGGGGGGCTTCCEEECCSSG
T ss_pred chhhcCCCCCEEECCCCc-CCcchhhHhhhcCCCCCEEEecCCC
Confidence 322566777777776663 4444332244556666666666654
No 103
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=98.82 E-value=7e-08 Score=89.26 Aligned_cols=46 Identities=22% Similarity=0.122 Sum_probs=24.4
Q ss_pred ccccceeecccccccceecCCCccccCCCcCeEEEeCCCCCcccCCCCCCCCC
Q 038204 157 FSNLKALTLLDLDSLTSFCSGNYTFKFPSLRDLEVIGCPKMKIFTTGELCTPP 209 (254)
Q Consensus 157 ~~~L~~L~l~~c~~L~~~~~~~~~~~~~sL~~L~i~~Cp~L~~lp~~~~~~~~ 209 (254)
+++|+.|++.++ +++.++. .+++|+.|++++| +++.+|......+.
T Consensus 240 l~~L~~L~Ls~N-~L~~lp~-----~~~~L~~L~Ls~N-~L~~lp~~l~~l~~ 285 (622)
T 3g06_A 240 PSELKELMVSGN-RLTSLPM-----LPSGLLSLSVYRN-QLTRLPESLIHLSS 285 (622)
T ss_dssp CTTCCEEECCSS-CCSCCCC-----CCTTCCEEECCSS-CCCSCCGGGGGSCT
T ss_pred CCcCcEEECCCC-CCCcCCc-----ccccCcEEeCCCC-CCCcCCHHHhhccc
Confidence 345555555554 4444433 3456777777666 45566654333333
No 104
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=98.80 E-value=2.6e-08 Score=88.73 Aligned_cols=11 Identities=9% Similarity=-0.097 Sum_probs=5.5
Q ss_pred CcccEEeccCC
Q 038204 48 SQVKHLQPYKL 58 (254)
Q Consensus 48 ~~L~~L~L~~~ 58 (254)
++|++|++.++
T Consensus 131 ~~L~~L~L~~n 141 (454)
T 1jl5_A 131 PLLEYLGVSNN 141 (454)
T ss_dssp TTCCEEECCSS
T ss_pred CCCCEEECcCC
Confidence 35555555443
No 105
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=98.80 E-value=1.5e-08 Score=87.55 Aligned_cols=158 Identities=13% Similarity=0.127 Sum_probs=99.8
Q ss_pred CCCcEEEEecccceEecCCCCccccccC-CCCcccEEeccCCcccccccccCCccccCCCCccEEEEecCCCcceecCCc
Q 038204 18 RNLEILYLSRTSYTEILSNEGHSEKHVG-KFSQVKHLQPYKLNDLKQLWKQGSKLDFIFTNLEILRVYCCQNLIVLLPSS 96 (254)
Q Consensus 18 ~~L~~L~l~~c~l~~l~~~~~~~~~~~~-~~~~L~~L~L~~~~~L~~l~~~~~~~~~~~~~L~~L~l~~C~~L~~l~p~~ 96 (254)
+.++.|+++++.++.++.. ... .+++|++|+|.+. +++.+... ....+++|++|+++++ +++.+.+..
T Consensus 39 ~~l~~L~Ls~N~l~~l~~~------~~~~~l~~L~~L~L~~N-~i~~i~~~---~~~~l~~L~~L~Ls~N-~l~~~~~~~ 107 (361)
T 2xot_A 39 SYTALLDLSHNNLSRLRAE------WTPTRLTNLHSLLLSHN-HLNFISSE---AFVPVPNLRYLDLSSN-HLHTLDEFL 107 (361)
T ss_dssp TTCSEEECCSSCCCEECTT------SSSSCCTTCCEEECCSS-CCCEECTT---TTTTCTTCCEEECCSS-CCCEECTTT
T ss_pred CCCCEEECCCCCCCccChh------hhhhcccccCEEECCCC-cCCccChh---hccCCCCCCEEECCCC-cCCcCCHHH
Confidence 4688899999888877652 122 5788999998775 45554322 2456788999999886 477775555
Q ss_pred ccccccccEEEeeccccccccccchhhccccccceeEEecCCCceeEeecCCCCccccccccccceeecccccccceecC
Q 038204 97 SVSFRNLTDLQVWGCKELMKLVTSSTAKSLVRLRIMKVCGSRAMTQVVTSEKDGAEDEIVFSNLKALTLLDLDSLTSFCS 176 (254)
Q Consensus 97 ~~~~~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~C~~l~~i~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~ 176 (254)
+..+++|+.|+++++. ++.+.+ .....+++|+.|+++++. +..++...- .....+++|+.|++.+. +++.++.
T Consensus 108 ~~~l~~L~~L~L~~N~-i~~~~~-~~~~~l~~L~~L~L~~N~-l~~l~~~~~---~~~~~l~~L~~L~L~~N-~l~~l~~ 180 (361)
T 2xot_A 108 FSDLQALEVLLLYNNH-IVVVDR-NAFEDMAQLQKLYLSQNQ-ISRFPVELI---KDGNKLPKLMLLDLSSN-KLKKLPL 180 (361)
T ss_dssp TTTCTTCCEEECCSSC-CCEECT-TTTTTCTTCCEEECCSSC-CCSCCGGGT---C----CTTCCEEECCSS-CCCCCCH
T ss_pred hCCCcCCCEEECCCCc-ccEECH-HHhCCcccCCEEECCCCc-CCeeCHHHh---cCcccCCcCCEEECCCC-CCCccCH
Confidence 6778889999998874 444433 345678888999888874 444332100 00134788888888875 5655543
Q ss_pred CCccccCCC--cCeEEEeCC
Q 038204 177 GNYTFKFPS--LRDLEVIGC 194 (254)
Q Consensus 177 ~~~~~~~~s--L~~L~i~~C 194 (254)
.. ...++. |+.|++.+.
T Consensus 181 ~~-~~~l~~~~l~~l~l~~N 199 (361)
T 2xot_A 181 TD-LQKLPAWVKNGLYLHNN 199 (361)
T ss_dssp HH-HHHSCHHHHTTEECCSS
T ss_pred HH-hhhccHhhcceEEecCC
Confidence 21 123343 356666553
No 106
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=98.77 E-value=1.8e-09 Score=98.82 Aligned_cols=45 Identities=9% Similarity=0.086 Sum_probs=28.4
Q ss_pred cccccceeecccccccceecCCCccccCCCcCeEEEeC---CCCCcccC
Q 038204 156 VFSNLKALTLLDLDSLTSFCSGNYTFKFPSLRDLEVIG---CPKMKIFT 201 (254)
Q Consensus 156 ~~~~L~~L~l~~c~~L~~~~~~~~~~~~~sL~~L~i~~---Cp~L~~lp 201 (254)
.+++|++|.+ +|.+++.-........+++|++|++.+ |.+++..|
T Consensus 376 ~~~~L~~L~l-~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p 423 (592)
T 3ogk_B 376 GCQELEYMAV-YVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLP 423 (592)
T ss_dssp HCTTCSEEEE-EESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCC
T ss_pred hCccCeEEEe-ecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCch
Confidence 3678888887 555665432221122478899999984 66777654
No 107
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.76 E-value=4.5e-09 Score=81.41 Aligned_cols=40 Identities=3% Similarity=0.091 Sum_probs=16.8
Q ss_pred CccEEEEecCCCcceecCCcccccccccEEEeecccccccc
Q 038204 77 NLEILRVYCCQNLIVLLPSSSVSFRNLTDLQVWGCKELMKL 117 (254)
Q Consensus 77 ~L~~L~l~~C~~L~~l~p~~~~~~~~L~~L~i~~C~~L~~l 117 (254)
+|+.|++++|. +++..-..+..+++|++|++++|..+++.
T Consensus 62 ~L~~LDLs~~~-Itd~GL~~L~~~~~L~~L~L~~C~~ItD~ 101 (176)
T 3e4g_A 62 KIQAIDATDSC-IMSIGFDHMEGLQYVEKIRLCKCHYIEDG 101 (176)
T ss_dssp CEEEEEEESCC-CCGGGGGGGTTCSCCCEEEEESCTTCCHH
T ss_pred eEeEEeCcCCC-ccHHHHHHhcCCCCCCEEEeCCCCccCHH
Confidence 34444444443 33222111334444455555555444443
No 108
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=98.74 E-value=3.6e-08 Score=81.45 Aligned_cols=124 Identities=20% Similarity=0.225 Sum_probs=96.0
Q ss_pred HhhCCCCcEEEEecccceEecCCCCccccccCCCCcccEEeccCCcccccccccCCccccCCCCccEEEEecCCCcceec
Q 038204 14 LEKFRNLEILYLSRTSYTEILSNEGHSEKHVGKFSQVKHLQPYKLNDLKQLWKQGSKLDFIFTNLEILRVYCCQNLIVLL 93 (254)
Q Consensus 14 ~~~l~~L~~L~l~~c~l~~l~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~l~~~~~~~~~~~~~L~~L~l~~C~~L~~l~ 93 (254)
+..+++|++|++++|.+..++. ++.+++|++|+++++ .++.+.. ... ++|++|++++| +++.+
T Consensus 59 l~~l~~L~~L~L~~N~i~~~~~--------l~~l~~L~~L~L~~N-~l~~l~~-----~~~-~~L~~L~L~~N-~l~~~- 121 (263)
T 1xeu_A 59 MQFFTNLKELHLSHNQISDLSP--------LKDLTKLEELSVNRN-RLKNLNG-----IPS-ACLSRLFLDNN-ELRDT- 121 (263)
T ss_dssp GGGCTTCCEEECCSSCCCCCGG--------GTTCSSCCEEECCSS-CCSCCTT-----CCC-SSCCEEECCSS-CCSBS-
T ss_pred HhhCCCCCEEECCCCccCCChh--------hccCCCCCEEECCCC-ccCCcCc-----ccc-CcccEEEccCC-ccCCC-
Confidence 5689999999999998876654 566999999999886 4555421 222 89999999998 56666
Q ss_pred CCcccccccccEEEeeccccccccccchhhccccccceeEEecCCCceeEeecCCCCccccccccccceeecccc
Q 038204 94 PSSSVSFRNLTDLQVWGCKELMKLVTSSTAKSLVRLRIMKVCGSRAMTQVVTSEKDGAEDEIVFSNLKALTLLDL 168 (254)
Q Consensus 94 p~~~~~~~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~C~~l~~i~~~~~~~~~~~~~~~~L~~L~l~~c 168 (254)
+. +..+++|+.|+++++. ++.++ ....+++|+.|+++++. +..+ .....+++|+.|++.+.
T Consensus 122 ~~-l~~l~~L~~L~Ls~N~-i~~~~---~l~~l~~L~~L~L~~N~-i~~~--------~~l~~l~~L~~L~l~~N 182 (263)
T 1xeu_A 122 DS-LIHLKNLEILSIRNNK-LKSIV---MLGFLSKLEVLDLHGNE-ITNT--------GGLTRLKKVNWIDLTGQ 182 (263)
T ss_dssp GG-GTTCTTCCEEECTTSC-CCBCG---GGGGCTTCCEEECTTSC-CCBC--------TTSTTCCCCCEEEEEEE
T ss_pred hh-hcCcccccEEECCCCc-CCCCh---HHccCCCCCEEECCCCc-Ccch--------HHhccCCCCCEEeCCCC
Confidence 44 7889999999999884 66663 46789999999999985 4433 13456889999999886
No 109
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=98.74 E-value=5.4e-08 Score=78.14 Aligned_cols=140 Identities=11% Similarity=0.128 Sum_probs=101.2
Q ss_pred ceechHHHhhCCCCcEEEEecccceEecCCCCccccccCCCCcccEEeccCCcccccccccCCccccCCCCccEEEEecC
Q 038204 7 ACFPLGLLEKFRNLEILYLSRTSYTEILSNEGHSEKHVGKFSQVKHLQPYKLNDLKQLWKQGSKLDFIFTNLEILRVYCC 86 (254)
Q Consensus 7 ~~~P~~~~~~l~~L~~L~l~~c~l~~l~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~l~~~~~~~~~~~~~L~~L~l~~C 86 (254)
..+|..+ .++|+.|+++++.++.++.. .+..+++|++|+|++. .++.+.. .....+++|++|+++++
T Consensus 24 ~~iP~~l---~~~l~~L~l~~n~i~~i~~~------~~~~l~~L~~L~Ls~N-~i~~~~~---~~~~~l~~L~~L~Ls~N 90 (220)
T 2v9t_B 24 TEIPTNL---PETITEIRLEQNTIKVIPPG------AFSPYKKLRRIDLSNN-QISELAP---DAFQGLRSLNSLVLYGN 90 (220)
T ss_dssp SSCCSSC---CTTCCEEECCSSCCCEECTT------SSTTCTTCCEEECCSS-CCCEECT---TTTTTCSSCCEEECCSS
T ss_pred CcCCCcc---CcCCCEEECCCCcCCCcCHh------HhhCCCCCCEEECCCC-cCCCcCH---HHhhCCcCCCEEECCCC
Confidence 3455543 26899999999988887651 2456899999999886 4555422 22456899999999986
Q ss_pred CCcceecCCcccccccccEEEeeccccccccccchhhccccccceeEEecCCCceeEeecCCCCccccccccccceeecc
Q 038204 87 QNLIVLLPSSSVSFRNLTDLQVWGCKELMKLVTSSTAKSLVRLRIMKVCGSRAMTQVVTSEKDGAEDEIVFSNLKALTLL 166 (254)
Q Consensus 87 ~~L~~l~p~~~~~~~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~C~~l~~i~~~~~~~~~~~~~~~~L~~L~l~ 166 (254)
+++.+.+..+..+++|+.|+++++ +++.+++ .....+++|+.|+++++. +..+.. .....+++|+.|++.
T Consensus 91 -~l~~l~~~~f~~l~~L~~L~L~~N-~l~~~~~-~~~~~l~~L~~L~L~~N~-l~~~~~------~~~~~l~~L~~L~L~ 160 (220)
T 2v9t_B 91 -KITELPKSLFEGLFSLQLLLLNAN-KINCLRV-DAFQDLHNLNLLSLYDNK-LQTIAK------GTFSPLRAIQTMHLA 160 (220)
T ss_dssp -CCCCCCTTTTTTCTTCCEEECCSS-CCCCCCT-TTTTTCTTCCEEECCSSC-CSCCCT------TTTTTCTTCCEEECC
T ss_pred -cCCccCHhHccCCCCCCEEECCCC-CCCEeCH-HHcCCCCCCCEEECCCCc-CCEECH------HHHhCCCCCCEEEeC
Confidence 577775544577999999999987 4666543 356788999999999985 444432 123457899999998
Q ss_pred ccc
Q 038204 167 DLD 169 (254)
Q Consensus 167 ~c~ 169 (254)
+.+
T Consensus 161 ~N~ 163 (220)
T 2v9t_B 161 QNP 163 (220)
T ss_dssp SSC
T ss_pred CCC
Confidence 763
No 110
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=98.72 E-value=1.6e-07 Score=86.92 Aligned_cols=38 Identities=29% Similarity=0.311 Sum_probs=24.9
Q ss_pred cccceeecccccccceecCCCccccCCCcCeEEEeCCCCCcccCC
Q 038204 158 SNLKALTLLDLDSLTSFCSGNYTFKFPSLRDLEVIGCPKMKIFTT 202 (254)
Q Consensus 158 ~~L~~L~l~~c~~L~~~~~~~~~~~~~sL~~L~i~~Cp~L~~lp~ 202 (254)
++|+.|++.++ +++.++ ..+++|+.|+++++ +++.+|.
T Consensus 221 ~~L~~L~Ls~N-~L~~lp-----~~l~~L~~L~Ls~N-~L~~lp~ 258 (622)
T 3g06_A 221 SGLKELIVSGN-RLTSLP-----VLPSELKELMVSGN-RLTSLPM 258 (622)
T ss_dssp TTCCEEECCSS-CCSCCC-----CCCTTCCEEECCSS-CCSCCCC
T ss_pred CCCCEEEccCC-ccCcCC-----CCCCcCcEEECCCC-CCCcCCc
Confidence 56666666655 555544 24577888888877 5777776
No 111
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=98.72 E-value=6.5e-08 Score=77.67 Aligned_cols=139 Identities=12% Similarity=0.100 Sum_probs=97.9
Q ss_pred eechHHHhhCCCCcEEEEecccceEecCCCCccccccCCCCcccEEeccCCcccccccccCCccccCCCCccEEEEecCC
Q 038204 8 CFPLGLLEKFRNLEILYLSRTSYTEILSNEGHSEKHVGKFSQVKHLQPYKLNDLKQLWKQGSKLDFIFTNLEILRVYCCQ 87 (254)
Q Consensus 8 ~~P~~~~~~l~~L~~L~l~~c~l~~l~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~l~~~~~~~~~~~~~L~~L~l~~C~ 87 (254)
.+|..+ .+.+++|+++++.++.+... ..++.+++|++|++.+. .++.+... ....+++|++|+++++
T Consensus 25 ~iP~~~---~~~~~~L~L~~N~l~~~~~~-----~~~~~l~~L~~L~L~~N-~i~~i~~~---~~~~l~~L~~L~Ls~N- 91 (220)
T 2v70_A 25 KIPEHI---PQYTAELRLNNNEFTVLEAT-----GIFKKLPQLRKINFSNN-KITDIEEG---AFEGASGVNEILLTSN- 91 (220)
T ss_dssp SCCSCC---CTTCSEEECCSSCCCEECCC-----CCGGGCTTCCEEECCSS-CCCEECTT---TTTTCTTCCEEECCSS-
T ss_pred cCccCC---CCCCCEEEcCCCcCCccCch-----hhhccCCCCCEEECCCC-cCCEECHH---HhCCCCCCCEEECCCC-
Confidence 356543 35678999999988877541 12456899999999875 46655322 2456889999999986
Q ss_pred CcceecCCcccccccccEEEeeccccccccccchhhccccccceeEEecCCCceeEeecCCCCccccccccccceeeccc
Q 038204 88 NLIVLLPSSSVSFRNLTDLQVWGCKELMKLVTSSTAKSLVRLRIMKVCGSRAMTQVVTSEKDGAEDEIVFSNLKALTLLD 167 (254)
Q Consensus 88 ~L~~l~p~~~~~~~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~C~~l~~i~~~~~~~~~~~~~~~~L~~L~l~~ 167 (254)
.++.+.+..+..+++|++|+++++. ++.+.+ .....+++|+.|+++++. +..+.. .....+++|+.|++.+
T Consensus 92 ~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~-~~~~~l~~L~~L~L~~N~-l~~~~~------~~~~~l~~L~~L~L~~ 162 (220)
T 2v70_A 92 RLENVQHKMFKGLESLKTLMLRSNR-ITCVGN-DSFIGLSSVRLLSLYDNQ-ITTVAP------GAFDTLHSLSTLNLLA 162 (220)
T ss_dssp CCCCCCGGGGTTCSSCCEEECTTSC-CCCBCT-TSSTTCTTCSEEECTTSC-CCCBCT------TTTTTCTTCCEEECCS
T ss_pred ccCccCHhHhcCCcCCCEEECCCCc-CCeECH-hHcCCCccCCEEECCCCc-CCEECH------HHhcCCCCCCEEEecC
Confidence 4666655556789999999999874 555543 345678999999999874 544422 1344578899999987
Q ss_pred c
Q 038204 168 L 168 (254)
Q Consensus 168 c 168 (254)
.
T Consensus 163 N 163 (220)
T 2v70_A 163 N 163 (220)
T ss_dssp C
T ss_pred c
Confidence 5
No 112
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=98.72 E-value=5.1e-08 Score=78.77 Aligned_cols=139 Identities=20% Similarity=0.164 Sum_probs=101.7
Q ss_pred ceechHHHhhCCCCcEEEEecccceEecCCCCccccccCCCCcccEEeccCCcccccccccCCccccCCCCccEEEEecC
Q 038204 7 ACFPLGLLEKFRNLEILYLSRTSYTEILSNEGHSEKHVGKFSQVKHLQPYKLNDLKQLWKQGSKLDFIFTNLEILRVYCC 86 (254)
Q Consensus 7 ~~~P~~~~~~l~~L~~L~l~~c~l~~l~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~l~~~~~~~~~~~~~L~~L~l~~C 86 (254)
..+|..+ .++|++|++++|.+..+.+ ..++.+++|++|+|.+. .++.+... ....+++|++|+++++
T Consensus 32 ~~ip~~~---~~~L~~L~Ls~n~i~~~~~------~~~~~l~~L~~L~L~~N-~l~~i~~~---~~~~l~~L~~L~Ls~N 98 (229)
T 3e6j_A 32 ASVPAGI---PTNAQILYLHDNQITKLEP------GVFDSLINLKELYLGSN-QLGALPVG---VFDSLTQLTVLDLGTN 98 (229)
T ss_dssp SSCCSCC---CTTCSEEECCSSCCCCCCT------TTTTTCTTCCEEECCSS-CCCCCCTT---TTTTCTTCCEEECCSS
T ss_pred CccCCCC---CCCCCEEEcCCCccCccCH------HHhhCccCCcEEECCCC-CCCCcChh---hcccCCCcCEEECCCC
Confidence 3455543 3889999999998876644 13556899999999886 35554322 2356899999999997
Q ss_pred CCcceecCCcccccccccEEEeeccccccccccchhhccccccceeEEecCCCceeEeecCCCCccccccccccceeecc
Q 038204 87 QNLIVLLPSSSVSFRNLTDLQVWGCKELMKLVTSSTAKSLVRLRIMKVCGSRAMTQVVTSEKDGAEDEIVFSNLKALTLL 166 (254)
Q Consensus 87 ~~L~~l~p~~~~~~~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~C~~l~~i~~~~~~~~~~~~~~~~L~~L~l~ 166 (254)
+++.+.+..+..+++|+.|+++++ +++.++ .....+++|+.|+++++. +..++. .....+++|+.|++.
T Consensus 99 -~l~~l~~~~~~~l~~L~~L~Ls~N-~l~~lp--~~~~~l~~L~~L~L~~N~-l~~~~~------~~~~~l~~L~~L~l~ 167 (229)
T 3e6j_A 99 -QLTVLPSAVFDRLVHLKELFMCCN-KLTELP--RGIERLTHLTHLALDQNQ-LKSIPH------GAFDRLSSLTHAYLF 167 (229)
T ss_dssp -CCCCCCTTTTTTCTTCCEEECCSS-CCCSCC--TTGGGCTTCSEEECCSSC-CCCCCT------TTTTTCTTCCEEECT
T ss_pred -cCCccChhHhCcchhhCeEeccCC-cccccC--cccccCCCCCEEECCCCc-CCccCH------HHHhCCCCCCEEEee
Confidence 677775554578999999999987 466664 345789999999999974 554432 134457899999998
Q ss_pred ccc
Q 038204 167 DLD 169 (254)
Q Consensus 167 ~c~ 169 (254)
+.+
T Consensus 168 ~N~ 170 (229)
T 3e6j_A 168 GNP 170 (229)
T ss_dssp TSC
T ss_pred CCC
Confidence 764
No 113
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.71 E-value=6.2e-09 Score=80.61 Aligned_cols=87 Identities=7% Similarity=0.119 Sum_probs=39.3
Q ss_pred cccEEeccCCcccccccccCCccccCCCCccEEEEecCCCcceecCCcccc----cccccEEEeeccccccccccchhhc
Q 038204 49 QVKHLQPYKLNDLKQLWKQGSKLDFIFTNLEILRVYCCQNLIVLLPSSSVS----FRNLTDLQVWGCKELMKLVTSSTAK 124 (254)
Q Consensus 49 ~L~~L~L~~~~~L~~l~~~~~~~~~~~~~L~~L~l~~C~~L~~l~p~~~~~----~~~L~~L~i~~C~~L~~l~~~~~~~ 124 (254)
+|++|++++|. ++.. +......+++|++|++++|..+++..-..+.. .++|++|+|++|+++++..... ..
T Consensus 62 ~L~~LDLs~~~-Itd~---GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~-L~ 136 (176)
T 3e4g_A 62 KIQAIDATDSC-IMSI---GFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIA-LH 136 (176)
T ss_dssp CEEEEEEESCC-CCGG---GGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHH-GG
T ss_pred eEeEEeCcCCC-ccHH---HHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHH-Hh
Confidence 35555555554 3332 22223445555555555555554432111111 2345555555555555543222 23
Q ss_pred cccccceeEEecCCCc
Q 038204 125 SLVRLRIMKVCGSRAM 140 (254)
Q Consensus 125 ~l~~L~~L~i~~C~~l 140 (254)
.+++|++|+|++|+.+
T Consensus 137 ~~~~L~~L~L~~c~~I 152 (176)
T 3e4g_A 137 HFRNLKYLFLSDLPGV 152 (176)
T ss_dssp GCTTCCEEEEESCTTC
T ss_pred cCCCCCEEECCCCCCC
Confidence 4455555555555544
No 114
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=98.69 E-value=9e-08 Score=85.27 Aligned_cols=17 Identities=29% Similarity=0.360 Sum_probs=9.3
Q ss_pred CcCeEEEeCCCCCcccCC
Q 038204 185 SLRDLEVIGCPKMKIFTT 202 (254)
Q Consensus 185 sL~~L~i~~Cp~L~~lp~ 202 (254)
+|++|+++++ +++.+|.
T Consensus 318 ~L~~L~Ls~N-~l~~lp~ 334 (454)
T 1jl5_A 318 SLEELNVSNN-KLIELPA 334 (454)
T ss_dssp TCCEEECCSS-CCSCCCC
T ss_pred cCCEEECCCC-ccccccc
Confidence 5666666654 3444544
No 115
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=98.67 E-value=2.6e-08 Score=74.73 Aligned_cols=108 Identities=18% Similarity=0.184 Sum_probs=79.0
Q ss_pred hCCCCcEEEEecccce--EecCCCCccccccCCCCcccEEeccCCcccccccccCCccccCCCCccEEEEecCCCcceec
Q 038204 16 KFRNLEILYLSRTSYT--EILSNEGHSEKHVGKFSQVKHLQPYKLNDLKQLWKQGSKLDFIFTNLEILRVYCCQNLIVLL 93 (254)
Q Consensus 16 ~l~~L~~L~l~~c~l~--~l~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~l~~~~~~~~~~~~~L~~L~l~~C~~L~~l~ 93 (254)
..++|+.|++++|.+. .++. .++.+++|++|++.++ .++.+ .....+++|++|+++++. +....
T Consensus 15 ~~~~l~~L~l~~n~l~~~~~~~-------~~~~l~~L~~L~l~~n-~l~~~-----~~~~~l~~L~~L~Ls~n~-i~~~~ 80 (149)
T 2je0_A 15 TPSDVKELVLDNSRSNEGKLEG-------LTDEFEELEFLSTINV-GLTSI-----ANLPKLNKLKKLELSDNR-VSGGL 80 (149)
T ss_dssp CGGGCSEEECTTCBCBTTBCCS-------CCTTCTTCCEEECTTS-CCCCC-----TTCCCCTTCCEEECCSSC-CCSCT
T ss_pred CCccCeEEEccCCcCChhHHHH-------HHhhcCCCcEEECcCC-CCCCc-----hhhhcCCCCCEEECCCCc-ccchH
Confidence 3578999999999776 4443 2456899999999887 55554 225668999999999875 44422
Q ss_pred CCcccccccccEEEeeccccccccccchhhccccccceeEEecCC
Q 038204 94 PSSSVSFRNLTDLQVWGCKELMKLVTSSTAKSLVRLRIMKVCGSR 138 (254)
Q Consensus 94 p~~~~~~~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~C~ 138 (254)
|..+..+++|+.|+++++. ++.++.......+++|++|++++|.
T Consensus 81 ~~~~~~l~~L~~L~ls~N~-i~~~~~~~~~~~l~~L~~L~l~~N~ 124 (149)
T 2je0_A 81 EVLAEKCPNLTHLNLSGNK-IKDLSTIEPLKKLENLKSLDLFNCE 124 (149)
T ss_dssp HHHHHHCTTCCEEECTTSC-CCSHHHHGGGGGCTTCCEEECTTCG
T ss_pred HHHhhhCCCCCEEECCCCc-CCChHHHHHHhhCCCCCEEeCcCCc
Confidence 5435568999999999885 6655433456788888999888884
No 116
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=98.60 E-value=2.5e-07 Score=84.72 Aligned_cols=150 Identities=19% Similarity=0.132 Sum_probs=71.5
Q ss_pred CCcEEEEecccceEecCCCCccccccCCCCcccEEeccCCcccccccccCCccccCCCCccEEEEecCCCcceecCCccc
Q 038204 19 NLEILYLSRTSYTEILSNEGHSEKHVGKFSQVKHLQPYKLNDLKQLWKQGSKLDFIFTNLEILRVYCCQNLIVLLPSSSV 98 (254)
Q Consensus 19 ~L~~L~l~~c~l~~l~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~l~~~~~~~~~~~~~L~~L~l~~C~~L~~l~p~~~~ 98 (254)
+|+.|++++|+++.++.. + +++|++|+++++ +++.+. ..+++|++|+++++ +++.+ |. +.
T Consensus 60 ~L~~L~Ls~n~L~~lp~~-------l--~~~L~~L~Ls~N-~l~~ip-------~~l~~L~~L~Ls~N-~l~~i-p~-l~ 119 (571)
T 3cvr_A 60 QFSELQLNRLNLSSLPDN-------L--PPQITVLEITQN-ALISLP-------ELPASLEYLDACDN-RLSTL-PE-LP 119 (571)
T ss_dssp TCSEEECCSSCCSCCCSC-------C--CTTCSEEECCSS-CCSCCC-------CCCTTCCEEECCSS-CCSCC-CC-CC
T ss_pred CccEEEeCCCCCCccCHh-------H--cCCCCEEECcCC-CCcccc-------cccCCCCEEEccCC-CCCCc-ch-hh
Confidence 788888887766655431 1 456666666554 333331 22455555555554 34433 22 21
Q ss_pred ccccccEEEeeccccccccccc---------------hhhccccccceeEEecCCCceeEeecCCCCcccccccccccee
Q 038204 99 SFRNLTDLQVWGCKELMKLVTS---------------STAKSLVRLRIMKVCGSRAMTQVVTSEKDGAEDEIVFSNLKAL 163 (254)
Q Consensus 99 ~~~~L~~L~i~~C~~L~~l~~~---------------~~~~~l~~L~~L~i~~C~~l~~i~~~~~~~~~~~~~~~~L~~L 163 (254)
. +|+.|+++++ +++.++.. .....+++|+.|++++|. +..++. ..++|+.|
T Consensus 120 ~--~L~~L~Ls~N-~l~~lp~~l~~L~~L~Ls~N~l~~lp~~l~~L~~L~Ls~N~-L~~lp~----------l~~~L~~L 185 (571)
T 3cvr_A 120 A--SLKHLDVDNN-QLTMLPELPALLEYINADNNQLTMLPELPTSLEVLSVRNNQ-LTFLPE----------LPESLEAL 185 (571)
T ss_dssp T--TCCEEECCSS-CCSCCCCCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSC-CSCCCC----------CCTTCCEE
T ss_pred c--CCCEEECCCC-cCCCCCCcCccccEEeCCCCccCcCCCcCCCcCEEECCCCC-CCCcch----------hhCCCCEE
Confidence 1 4555555544 23332210 000023444445544442 222111 11567777
Q ss_pred ecccccccceecCCCccccCCCc-------CeEEEeCCCCCcccCCCCCCCCC
Q 038204 164 TLLDLDSLTSFCSGNYTFKFPSL-------RDLEVIGCPKMKIFTTGELCTPP 209 (254)
Q Consensus 164 ~l~~c~~L~~~~~~~~~~~~~sL-------~~L~i~~Cp~L~~lp~~~~~~~~ 209 (254)
++.++ +++.++. . . .+| +.|+++++ +++.+|......+.
T Consensus 186 ~Ls~N-~L~~lp~-~--~--~~L~~~~~~L~~L~Ls~N-~l~~lp~~l~~l~~ 231 (571)
T 3cvr_A 186 DVSTN-LLESLPA-V--P--VRNHHSEETEIFFRCREN-RITHIPENILSLDP 231 (571)
T ss_dssp ECCSS-CCSSCCC-C--C----------CCEEEECCSS-CCCCCCGGGGGSCT
T ss_pred ECcCC-CCCchhh-H--H--HhhhcccccceEEecCCC-cceecCHHHhcCCC
Confidence 77665 5555544 1 1 145 77777776 56677765444443
No 117
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=98.50 E-value=4.6e-07 Score=71.03 Aligned_cols=126 Identities=13% Similarity=0.114 Sum_probs=63.0
Q ss_pred cEEEEecccceEecCCCCccccccCCCCcccEEeccCCcccccccccCCccccCCCCccEEEEecCCCcceecCCccccc
Q 038204 21 EILYLSRTSYTEILSNEGHSEKHVGKFSQVKHLQPYKLNDLKQLWKQGSKLDFIFTNLEILRVYCCQNLIVLLPSSSVSF 100 (254)
Q Consensus 21 ~~L~l~~c~l~~l~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~l~~~~~~~~~~~~~L~~L~l~~C~~L~~l~p~~~~~~ 100 (254)
+.++++++++++++. .+ .++|++|.+.+. .++.+... .....+++|++|+++++ +++.+.|..+..+
T Consensus 11 ~~l~~s~~~l~~ip~-------~~--~~~l~~L~l~~n-~i~~~~~~--~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l 77 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPR-------DI--PLHTTELLLNDN-ELGRISSD--GLFGRLPHLVKLELKRN-QLTGIEPNAFEGA 77 (192)
T ss_dssp TEEECTTSCCSSCCS-------CC--CTTCSEEECCSC-CCCSBCCS--CSGGGCTTCCEEECCSS-CCCCBCTTTTTTC
T ss_pred CEEEcCCCCcCcCcc-------CC--CCCCCEEECCCC-cCCccCCc--cccccCCCCCEEECCCC-CCCCcCHhHcCCc
Confidence 455555555554443 11 336666666554 34333211 01234566666666664 3444444445566
Q ss_pred ccccEEEeeccccccccccchhhccccccceeEEecCCCceeEeecCCCCccccccccccceeecccc
Q 038204 101 RNLTDLQVWGCKELMKLVTSSTAKSLVRLRIMKVCGSRAMTQVVTSEKDGAEDEIVFSNLKALTLLDL 168 (254)
Q Consensus 101 ~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~C~~l~~i~~~~~~~~~~~~~~~~L~~L~l~~c 168 (254)
++|++|+++++ +++.+++ .....+++|++|+++++. +..++. .....+++|+.|++.+.
T Consensus 78 ~~L~~L~Ls~N-~l~~~~~-~~~~~l~~L~~L~L~~N~-l~~~~~------~~~~~l~~L~~L~L~~N 136 (192)
T 1w8a_A 78 SHIQELQLGEN-KIKEISN-KMFLGLHQLKTLNLYDNQ-ISCVMP------GSFEHLNSLTSLNLASN 136 (192)
T ss_dssp TTCCEEECCSC-CCCEECS-SSSTTCTTCCEEECCSSC-CCEECT------TSSTTCTTCCEEECTTC
T ss_pred ccCCEEECCCC-cCCccCH-HHhcCCCCCCEEECCCCc-CCeeCH------HHhhcCCCCCEEEeCCC
Confidence 66666666665 3444432 223456666666666653 333321 12234556666666553
No 118
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.48 E-value=5.4e-07 Score=69.47 Aligned_cols=61 Identities=18% Similarity=0.121 Sum_probs=28.9
Q ss_pred CCCCccEEEEecCCCcceecCCcccccccccEEEeeccccccccccchhhccccccceeEEecC
Q 038204 74 IFTNLEILRVYCCQNLIVLLPSSSVSFRNLTDLQVWGCKELMKLVTSSTAKSLVRLRIMKVCGS 137 (254)
Q Consensus 74 ~~~~L~~L~l~~C~~L~~l~p~~~~~~~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~C 137 (254)
.+++|++|+++++ +++.+.+..+..+++|+.|+++++ +++.++. .....+++|++|+++++
T Consensus 50 ~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~-~~~~~l~~L~~L~l~~N 110 (177)
T 2o6r_A 50 KLTQLTKLSLSQN-QIQSLPDGVFDKLTKLTILYLHEN-KLQSLPN-GVFDKLTQLKELALDTN 110 (177)
T ss_dssp TCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCCCCCT-TTTTTCTTCCEEECCSS
T ss_pred CcccccEEECCCC-cceEeChhHccCCCccCEEECCCC-CccccCH-HHhhCCcccCEEECcCC
Confidence 3455555555554 344443332344555555555554 2333322 22344555555555555
No 119
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=98.47 E-value=5.3e-07 Score=82.51 Aligned_cols=108 Identities=13% Similarity=0.038 Sum_probs=71.5
Q ss_pred CCCCccEEEEecCCCcceecCCcccccccccEEEeeccccccccccchhhccccccceeEEecCCCceeEeecCCCCccc
Q 038204 74 IFTNLEILRVYCCQNLIVLLPSSSVSFRNLTDLQVWGCKELMKLVTSSTAKSLVRLRIMKVCGSRAMTQVVTSEKDGAED 153 (254)
Q Consensus 74 ~~~~L~~L~l~~C~~L~~l~p~~~~~~~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~C~~l~~i~~~~~~~~~~ 153 (254)
.+++|+.|+++++ +++.+ |. .+++|+.|+++++. ++.++. .. ++|+.|+++++. +..++. -.. .-
T Consensus 138 ~l~~L~~L~Ls~N-~l~~l-p~---~l~~L~~L~Ls~N~-L~~lp~---l~--~~L~~L~Ls~N~-L~~lp~-~~~--~L 202 (571)
T 3cvr_A 138 LPALLEYINADNN-QLTML-PE---LPTSLEVLSVRNNQ-LTFLPE---LP--ESLEALDVSTNL-LESLPA-VPV--RN 202 (571)
T ss_dssp CCTTCCEEECCSS-CCSCC-CC---CCTTCCEEECCSSC-CSCCCC---CC--TTCCEEECCSSC-CSSCCC-CC-----
T ss_pred cCccccEEeCCCC-ccCcC-CC---cCCCcCEEECCCCC-CCCcch---hh--CCCCEEECcCCC-CCchhh-HHH--hh
Confidence 4677888888776 35555 43 57889999998884 666543 22 889999999984 554432 000 00
Q ss_pred cccccccceeecccccccceecCCCccccCCCcCeEEEeCCCCCcc
Q 038204 154 EIVFSNLKALTLLDLDSLTSFCSGNYTFKFPSLRDLEVIGCPKMKI 199 (254)
Q Consensus 154 ~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~~sL~~L~i~~Cp~L~~ 199 (254)
....+.|+.|++.++ +++.++... ..+++|+.|++++++--..
T Consensus 203 ~~~~~~L~~L~Ls~N-~l~~lp~~l--~~l~~L~~L~L~~N~l~~~ 245 (571)
T 3cvr_A 203 HHSEETEIFFRCREN-RITHIPENI--LSLDPTCTIILEDNPLSSR 245 (571)
T ss_dssp -----CCEEEECCSS-CCCCCCGGG--GGSCTTEEEECCSSSCCHH
T ss_pred hcccccceEEecCCC-cceecCHHH--hcCCCCCEEEeeCCcCCCc
Confidence 001122399999986 788877643 5689999999999974443
No 120
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=98.47 E-value=6.5e-09 Score=90.38 Aligned_cols=13 Identities=31% Similarity=0.327 Sum_probs=6.4
Q ss_pred hCCCCcEEEEecc
Q 038204 16 KFRNLEILYLSRT 28 (254)
Q Consensus 16 ~l~~L~~L~l~~c 28 (254)
.+++|++|++++|
T Consensus 58 ~~~~L~~L~Ls~~ 70 (386)
T 2ca6_A 58 SKKDLEIAEFSDI 70 (386)
T ss_dssp TCTTCCEEECCSC
T ss_pred hCCCccEEeCccc
Confidence 3445555555444
No 121
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.45 E-value=7.9e-07 Score=68.53 Aligned_cols=108 Identities=19% Similarity=0.157 Sum_probs=48.2
Q ss_pred CCccEEEEecCCCcceecCCcccccccccEEEeeccccccccccchhhccccccceeEEecCCCceeEeecCCCCccccc
Q 038204 76 TNLEILRVYCCQNLIVLLPSSSVSFRNLTDLQVWGCKELMKLVTSSTAKSLVRLRIMKVCGSRAMTQVVTSEKDGAEDEI 155 (254)
Q Consensus 76 ~~L~~L~l~~C~~L~~l~p~~~~~~~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~C~~l~~i~~~~~~~~~~~~ 155 (254)
++|++|+++++. ++.+.+..+..+++|++|+++++ +++.++. .....+++|+.|+++++. +..++. ....
T Consensus 28 ~~l~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~-~~~~~l~~L~~L~l~~N~-l~~~~~------~~~~ 97 (177)
T 2o6r_A 28 SSATRLELESNK-LQSLPHGVFDKLTQLTKLSLSQN-QIQSLPD-GVFDKLTKLTILYLHENK-LQSLPN------GVFD 97 (177)
T ss_dssp TTCSEEECCSSC-CCCCCTTTTTTCTTCSEEECCSS-CCCCCCT-TTTTTCTTCCEEECCSSC-CCCCCT------TTTT
T ss_pred CCCcEEEeCCCc-ccEeCHHHhcCcccccEEECCCC-cceEeCh-hHccCCCccCEEECCCCC-ccccCH------HHhh
Confidence 345555555432 33332322344555555555554 3333322 223455555555555543 322221 0122
Q ss_pred cccccceeecccccccceecCCCccccCCCcCeEEEeCCC
Q 038204 156 VFSNLKALTLLDLDSLTSFCSGNYTFKFPSLRDLEVIGCP 195 (254)
Q Consensus 156 ~~~~L~~L~l~~c~~L~~~~~~~~~~~~~sL~~L~i~~Cp 195 (254)
.+++|+.|++.+. +++.++... ...+++|++|++++++
T Consensus 98 ~l~~L~~L~l~~N-~l~~~~~~~-~~~l~~L~~L~l~~N~ 135 (177)
T 2o6r_A 98 KLTQLKELALDTN-QLKSVPDGI-FDRLTSLQKIWLHTNP 135 (177)
T ss_dssp TCTTCCEEECCSS-CCSCCCTTT-TTTCTTCCEEECCSSC
T ss_pred CCcccCEEECcCC-cceEeCHHH-hcCCcccCEEEecCCC
Confidence 3455555555554 444444321 1234555555555543
No 122
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=98.44 E-value=2.5e-08 Score=86.66 Aligned_cols=95 Identities=9% Similarity=0.002 Sum_probs=53.4
Q ss_pred HhhCCCCcEEEEecccceEecCCCCccccccCCCCcccEEeccCC--cccccccccCC----ccccCCCCccEEEEecCC
Q 038204 14 LEKFRNLEILYLSRTSYTEILSNEGHSEKHVGKFSQVKHLQPYKL--NDLKQLWKQGS----KLDFIFTNLEILRVYCCQ 87 (254)
Q Consensus 14 ~~~l~~L~~L~l~~c~l~~l~~~~~~~~~~~~~~~~L~~L~L~~~--~~L~~l~~~~~----~~~~~~~~L~~L~l~~C~ 87 (254)
+..+++|++|++++|.+..... ......+..+++|++|+|+++ ..+........ .....+++|++|+++++.
T Consensus 28 l~~~~~L~~L~L~~n~i~~~~~--~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~ 105 (386)
T 2ca6_A 28 LLEDDSVKEIVLSGNTIGTEAA--RWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNA 105 (386)
T ss_dssp HHHCSCCCEEECTTSEECHHHH--HHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCC
T ss_pred HhcCCCccEEECCCCCCCHHHH--HHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCc
Confidence 4678999999999996553211 000011345888999988876 22221100000 011456778888887764
Q ss_pred Ccce-----ecCCcccccccccEEEeeccc
Q 038204 88 NLIV-----LLPSSSVSFRNLTDLQVWGCK 112 (254)
Q Consensus 88 ~L~~-----l~p~~~~~~~~L~~L~i~~C~ 112 (254)
+.. + |..+..+++|++|++++|.
T Consensus 106 -l~~~~~~~l-~~~l~~~~~L~~L~L~~n~ 133 (386)
T 2ca6_A 106 -FGPTAQEPL-IDFLSKHTPLEHLYLHNNG 133 (386)
T ss_dssp -CCTTTHHHH-HHHHHHCTTCCEEECCSSC
T ss_pred -CCHHHHHHH-HHHHHhCCCCCEEECcCCC
Confidence 322 2 2224556777777777664
No 123
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=98.44 E-value=1.7e-07 Score=88.20 Aligned_cols=113 Identities=19% Similarity=0.120 Sum_probs=63.0
Q ss_pred echHHHhhCCCCcEEEEecccceEecCCCCccccccCCCCcccEEeccCCcccccccccCCccccCCCCccEEEEecCCC
Q 038204 9 FPLGLLEKFRNLEILYLSRTSYTEILSNEGHSEKHVGKFSQVKHLQPYKLNDLKQLWKQGSKLDFIFTNLEILRVYCCQN 88 (254)
Q Consensus 9 ~P~~~~~~l~~L~~L~l~~c~l~~l~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~l~~~~~~~~~~~~~L~~L~l~~C~~ 88 (254)
+|...+..+++|+.|+|++|.+..++. .+..+++|++|+|+++ .++.+.. ....+++|++|+|+++.
T Consensus 215 ~~~~~~~~l~~L~~L~Ls~n~l~~l~~-------~~~~l~~L~~L~Ls~N-~l~~lp~----~~~~l~~L~~L~Ls~N~- 281 (727)
T 4b8c_D 215 MPKDSKYDDQLWHALDLSNLQIFNISA-------NIFKYDFLTRLYLNGN-SLTELPA----EIKNLSNLRVLDLSHNR- 281 (727)
T ss_dssp -------CCCCCCEEECTTSCCSCCCG-------GGGGCCSCSCCBCTTS-CCSCCCG----GGGGGTTCCEEECTTSC-
T ss_pred cChhhhccCCCCcEEECCCCCCCCCCh-------hhcCCCCCCEEEeeCC-cCcccCh----hhhCCCCCCEEeCcCCc-
Confidence 344445566777777777765554433 2334667777777654 3443321 23456677777777653
Q ss_pred cceecCCcccccccccEEEeeccccccccccchhhccccccceeEEecCC
Q 038204 89 LIVLLPSSSVSFRNLTDLQVWGCKELMKLVTSSTAKSLVRLRIMKVCGSR 138 (254)
Q Consensus 89 L~~l~p~~~~~~~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~C~ 138 (254)
++.+ |..+..+++|++|+++++ .++.++. ....+++|+.|+++++.
T Consensus 282 l~~l-p~~~~~l~~L~~L~L~~N-~l~~lp~--~~~~l~~L~~L~L~~N~ 327 (727)
T 4b8c_D 282 LTSL-PAELGSCFQLKYFYFFDN-MVTTLPW--EFGNLCNLQFLGVEGNP 327 (727)
T ss_dssp CSSC-CSSGGGGTTCSEEECCSS-CCCCCCS--STTSCTTCCCEECTTSC
T ss_pred CCcc-ChhhcCCCCCCEEECCCC-CCCccCh--hhhcCCCccEEeCCCCc
Confidence 5555 555666777777777666 4555532 25666777777776664
No 124
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=98.43 E-value=2.1e-07 Score=87.70 Aligned_cols=107 Identities=21% Similarity=0.214 Sum_probs=60.7
Q ss_pred cCCCCccEEEEecCCCcceecCCcccccccccEEEeeccccccccccchhhccccccceeEEecCCCceeEeecCCCCcc
Q 038204 73 FIFTNLEILRVYCCQNLIVLLPSSSVSFRNLTDLQVWGCKELMKLVTSSTAKSLVRLRIMKVCGSRAMTQVVTSEKDGAE 152 (254)
Q Consensus 73 ~~~~~L~~L~l~~C~~L~~l~p~~~~~~~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~C~~l~~i~~~~~~~~~ 152 (254)
..+++|+.|+++++. +..+ |..+..+++|++|+++++ +++.++ .....+++|+.|+++++. +..++.
T Consensus 221 ~~l~~L~~L~Ls~n~-l~~l-~~~~~~l~~L~~L~Ls~N-~l~~lp--~~~~~l~~L~~L~Ls~N~-l~~lp~------- 287 (727)
T 4b8c_D 221 YDDQLWHALDLSNLQ-IFNI-SANIFKYDFLTRLYLNGN-SLTELP--AEIKNLSNLRVLDLSHNR-LTSLPA------- 287 (727)
T ss_dssp -CCCCCCEEECTTSC-CSCC-CGGGGGCCSCSCCBCTTS-CCSCCC--GGGGGGTTCCEEECTTSC-CSSCCS-------
T ss_pred ccCCCCcEEECCCCC-CCCC-ChhhcCCCCCCEEEeeCC-cCcccC--hhhhCCCCCCEEeCcCCc-CCccCh-------
Confidence 345666666666654 4444 333556666777777665 344443 234566666777776664 433332
Q ss_pred ccccccccceeecccccccceecCCCccccCCCcCeEEEeCCC
Q 038204 153 DEIVFSNLKALTLLDLDSLTSFCSGNYTFKFPSLRDLEVIGCP 195 (254)
Q Consensus 153 ~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~~sL~~L~i~~Cp 195 (254)
....+++|+.|++.++ +++.++.. ...+++|+.|++++++
T Consensus 288 ~~~~l~~L~~L~L~~N-~l~~lp~~--~~~l~~L~~L~L~~N~ 327 (727)
T 4b8c_D 288 ELGSCFQLKYFYFFDN-MVTTLPWE--FGNLCNLQFLGVEGNP 327 (727)
T ss_dssp SGGGGTTCSEEECCSS-CCCCCCSS--TTSCTTCCCEECTTSC
T ss_pred hhcCCCCCCEEECCCC-CCCccChh--hhcCCCccEEeCCCCc
Confidence 3345666677776665 55555543 2456667777766664
No 125
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.43 E-value=2.9e-07 Score=84.31 Aligned_cols=161 Identities=20% Similarity=0.182 Sum_probs=99.8
Q ss_pred chHHHhhCCCCcEEE-EecccceEecCCCCccccccC--CCCcccEEeccCCcccccccccCCccccCCCCccEEEEecC
Q 038204 10 PLGLLEKFRNLEILY-LSRTSYTEILSNEGHSEKHVG--KFSQVKHLQPYKLNDLKQLWKQGSKLDFIFTNLEILRVYCC 86 (254)
Q Consensus 10 P~~~~~~l~~L~~L~-l~~c~l~~l~~~~~~~~~~~~--~~~~L~~L~L~~~~~L~~l~~~~~~~~~~~~~L~~L~l~~C 86 (254)
++..++.+++|+.|+ ++.+.+..+.... .....+. ....|+.|+++++ .++.+. ....+++|+.|+++++
T Consensus 401 ~~~~l~~l~~L~~L~~l~~n~~~~L~~l~-l~~n~i~~l~~~~L~~L~Ls~n-~l~~lp-----~~~~l~~L~~L~Ls~N 473 (567)
T 1dce_A 401 EKETLQYFSTLKAVDPMRAAYLDDLRSKF-LLENSVLKMEYADVRVLHLAHK-DLTVLC-----HLEQLLLVTHLDLSHN 473 (567)
T ss_dssp HHHHHHHHHHHHHHCGGGHHHHHHHHHHH-HHHHHHHHHHHTTCSEEECTTS-CCSSCC-----CGGGGTTCCEEECCSS
T ss_pred CHHHHHHHHhcccCcchhhcccchhhhhh-hhcccccccCccCceEEEecCC-CCCCCc-----CccccccCcEeecCcc
Confidence 334456777777777 3333332221100 0000011 1235888888775 555542 1566888999999886
Q ss_pred CCcceecCCcccccccccEEEeeccccccccccchhhccccccceeEEecCCCceeEeecCCCCccccccccccceeecc
Q 038204 87 QNLIVLLPSSSVSFRNLTDLQVWGCKELMKLVTSSTAKSLVRLRIMKVCGSRAMTQVVTSEKDGAEDEIVFSNLKALTLL 166 (254)
Q Consensus 87 ~~L~~l~p~~~~~~~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~C~~l~~i~~~~~~~~~~~~~~~~L~~L~l~ 166 (254)
+++.+ |..+..+++|+.|+++++ .++.++ ....+++|+.|+++++. +..+.. +.....+++|+.|++.
T Consensus 474 -~l~~l-p~~~~~l~~L~~L~Ls~N-~l~~lp---~l~~l~~L~~L~Ls~N~-l~~~~~-----p~~l~~l~~L~~L~L~ 541 (567)
T 1dce_A 474 -RLRAL-PPALAALRCLEVLQASDN-ALENVD---GVANLPRLQELLLCNNR-LQQSAA-----IQPLVSCPRLVLLNLQ 541 (567)
T ss_dssp -CCCCC-CGGGGGCTTCCEEECCSS-CCCCCG---GGTTCSSCCEEECCSSC-CCSSST-----TGGGGGCTTCCEEECT
T ss_pred -ccccc-chhhhcCCCCCEEECCCC-CCCCCc---ccCCCCCCcEEECCCCC-CCCCCC-----cHHHhcCCCCCEEEec
Confidence 56666 666888999999999887 455553 56788899999998874 443310 1245568899999998
Q ss_pred cccccceecCCC--ccccCCCcCeEE
Q 038204 167 DLDSLTSFCSGN--YTFKFPSLRDLE 190 (254)
Q Consensus 167 ~c~~L~~~~~~~--~~~~~~sL~~L~ 190 (254)
++ .++.++... ....+|+|+.|+
T Consensus 542 ~N-~l~~~~~~~~~l~~~lp~L~~L~ 566 (567)
T 1dce_A 542 GN-SLCQEEGIQERLAEMLPSVSSIL 566 (567)
T ss_dssp TS-GGGGSSSCTTHHHHHCTTCSEEE
T ss_pred CC-cCCCCccHHHHHHHHCcccCccC
Confidence 86 566554421 122478888875
No 126
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=98.42 E-value=9e-07 Score=69.50 Aligned_cols=107 Identities=17% Similarity=0.079 Sum_probs=56.1
Q ss_pred CCcccEEeccCCcccccccccCCccccCCCCccEEEEecCCCcceecCCcccccccccEEEeeccccccccccchhhccc
Q 038204 47 FSQVKHLQPYKLNDLKQLWKQGSKLDFIFTNLEILRVYCCQNLIVLLPSSSVSFRNLTDLQVWGCKELMKLVTSSTAKSL 126 (254)
Q Consensus 47 ~~~L~~L~L~~~~~L~~l~~~~~~~~~~~~~L~~L~l~~C~~L~~l~p~~~~~~~~L~~L~i~~C~~L~~l~~~~~~~~l 126 (254)
.++|++|.+.+. .++.+. .....+++|++|+++++ .++.+.+..+..+++|++|+++++. ++.+++ .....+
T Consensus 30 ~~~l~~L~L~~n-~i~~ip----~~~~~l~~L~~L~Ls~N-~i~~i~~~~f~~l~~L~~L~Ls~N~-l~~i~~-~~f~~l 101 (193)
T 2wfh_A 30 PRDVTELYLDGN-QFTLVP----KELSNYKHLTLIDLSNN-RISTLSNQSFSNMTQLLTLILSYNR-LRCIPP-RTFDGL 101 (193)
T ss_dssp CTTCCEEECCSS-CCCSCC----GGGGGCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC-CCBCCT-TTTTTC
T ss_pred CCCCCEEECCCC-cCchhH----HHhhcccCCCEEECCCC-cCCEeCHhHccCCCCCCEEECCCCc-cCEeCH-HHhCCC
Confidence 456667766554 333332 12345666666766664 3555544445566667777766653 444432 234556
Q ss_pred cccceeEEecCCCceeEeecCCCCccccccccccceeecccc
Q 038204 127 VRLRIMKVCGSRAMTQVVTSEKDGAEDEIVFSNLKALTLLDL 168 (254)
Q Consensus 127 ~~L~~L~i~~C~~l~~i~~~~~~~~~~~~~~~~L~~L~l~~c 168 (254)
++|+.|+++++. +..++. .....+++|+.|++.+.
T Consensus 102 ~~L~~L~L~~N~-l~~~~~------~~~~~l~~L~~L~L~~N 136 (193)
T 2wfh_A 102 KSLRLLSLHGND-ISVVPE------GAFNDLSALSHLAIGAN 136 (193)
T ss_dssp TTCCEEECCSSC-CCBCCT------TTTTTCTTCCEEECCSS
T ss_pred CCCCEEECCCCC-CCeeCh------hhhhcCccccEEEeCCC
Confidence 666666666653 333221 11223556666666543
No 127
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=98.42 E-value=3.3e-08 Score=85.26 Aligned_cols=122 Identities=12% Similarity=-0.024 Sum_probs=55.4
Q ss_pred hHHHhhCCCCcEEEEecccceEecCCCCccccccCCCC-cccEEeccCCcccccccccCCc-ccc-CCCCccEEEEecCC
Q 038204 11 LGLLEKFRNLEILYLSRTSYTEILSNEGHSEKHVGKFS-QVKHLQPYKLNDLKQLWKQGSK-LDF-IFTNLEILRVYCCQ 87 (254)
Q Consensus 11 ~~~~~~l~~L~~L~l~~c~l~~l~~~~~~~~~~~~~~~-~L~~L~L~~~~~L~~l~~~~~~-~~~-~~~~L~~L~l~~C~ 87 (254)
+.+....++|++|++++|.+...... .....+..++ +|++|+++++ .+......... ... .+++|++|++++|.
T Consensus 15 ~~~~~~~~~L~~L~Ls~n~l~~~~~~--~l~~~l~~~~~~L~~L~Ls~N-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~ 91 (362)
T 3goz_A 15 EEFTSIPHGVTSLDLSLNNLYSISTV--ELIQAFANTPASVTSLNLSGN-SLGFKNSDELVQILAAIPANVTSLNLSGNF 91 (362)
T ss_dssp HHHHTSCTTCCEEECTTSCGGGSCHH--HHHHHHHTCCTTCCEEECCSS-CGGGSCHHHHHHHHHTSCTTCCEEECCSSC
T ss_pred HHHHhCCCCceEEEccCCCCChHHHH--HHHHHHHhCCCceeEEECcCC-CCCHHHHHHHHHHHhccCCCccEEECcCCc
Confidence 33444556688888888865533210 0001223455 6777777665 33332100000 001 12667777776664
Q ss_pred CcceecCCc----cccc-ccccEEEeeccccccccccchhhc---c-ccccceeEEecC
Q 038204 88 NLIVLLPSS----SVSF-RNLTDLQVWGCKELMKLVTSSTAK---S-LVRLRIMKVCGS 137 (254)
Q Consensus 88 ~L~~l~p~~----~~~~-~~L~~L~i~~C~~L~~l~~~~~~~---~-l~~L~~L~i~~C 137 (254)
+....+.. +..+ ++|++|++++|. ++......... . .++|++|++++|
T Consensus 92 -l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N 148 (362)
T 3goz_A 92 -LSYKSSDELVKTLAAIPFTITVLDLGWND-FSSKSSSEFKQAFSNLPASITSLNLRGN 148 (362)
T ss_dssp -GGGSCHHHHHHHHHTSCTTCCEEECCSSC-GGGSCHHHHHHHHTTSCTTCCEEECTTS
T ss_pred -CChHHHHHHHHHHHhCCCCccEEECcCCc-CCcHHHHHHHHHHHhCCCceeEEEccCC
Confidence 33321111 1122 566666666654 33332222111 1 235566666555
No 128
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=98.39 E-value=9.4e-07 Score=69.25 Aligned_cols=117 Identities=11% Similarity=0.123 Sum_probs=86.1
Q ss_pred ceechHHHhhCCCCcEEEEecccceEecCCCCccccccCCCCcccEEeccCCcccccccccCCccccCCCCccEEEEecC
Q 038204 7 ACFPLGLLEKFRNLEILYLSRTSYTEILSNEGHSEKHVGKFSQVKHLQPYKLNDLKQLWKQGSKLDFIFTNLEILRVYCC 86 (254)
Q Consensus 7 ~~~P~~~~~~l~~L~~L~l~~c~l~~l~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~l~~~~~~~~~~~~~L~~L~l~~C 86 (254)
..+|..+. .+|+.|+++++.+..++.. ..++.+++|++|++++. .++.+.. .....+++|++|+++++
T Consensus 21 ~~ip~~~~---~~l~~L~l~~n~i~~~~~~-----~~~~~l~~L~~L~Ls~N-~l~~~~~---~~~~~l~~L~~L~Ls~N 88 (192)
T 1w8a_A 21 KEIPRDIP---LHTTELLLNDNELGRISSD-----GLFGRLPHLVKLELKRN-QLTGIEP---NAFEGASHIQELQLGEN 88 (192)
T ss_dssp SSCCSCCC---TTCSEEECCSCCCCSBCCS-----CSGGGCTTCCEEECCSS-CCCCBCT---TTTTTCTTCCEEECCSC
T ss_pred CcCccCCC---CCCCEEECCCCcCCccCCc-----cccccCCCCCEEECCCC-CCCCcCH---hHcCCcccCCEEECCCC
Confidence 34565432 4899999999988766541 12456999999999886 4555422 22456899999999996
Q ss_pred CCcceecCCcccccccccEEEeeccccccccccchhhccccccceeEEecCC
Q 038204 87 QNLIVLLPSSSVSFRNLTDLQVWGCKELMKLVTSSTAKSLVRLRIMKVCGSR 138 (254)
Q Consensus 87 ~~L~~l~p~~~~~~~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~C~ 138 (254)
+++.+.+..+..+++|++|+++++. ++.+.+ .....+++|+.|++++++
T Consensus 89 -~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~-~~~~~l~~L~~L~L~~N~ 137 (192)
T 1w8a_A 89 -KIKEISNKMFLGLHQLKTLNLYDNQ-ISCVMP-GSFEHLNSLTSLNLASNP 137 (192)
T ss_dssp -CCCEECSSSSTTCTTCCEEECCSSC-CCEECT-TSSTTCTTCCEEECTTCC
T ss_pred -cCCccCHHHhcCCCCCCEEECCCCc-CCeeCH-HHhhcCCCCCEEEeCCCC
Confidence 5777766657789999999999874 555533 346788999999999875
No 129
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=98.39 E-value=1e-06 Score=69.25 Aligned_cols=115 Identities=17% Similarity=0.229 Sum_probs=86.0
Q ss_pred ceechHHHhhCCCCcEEEEecccceEecCCCCccccccCCCCcccEEeccCCcccccccccCCccccCCCCccEEEEecC
Q 038204 7 ACFPLGLLEKFRNLEILYLSRTSYTEILSNEGHSEKHVGKFSQVKHLQPYKLNDLKQLWKQGSKLDFIFTNLEILRVYCC 86 (254)
Q Consensus 7 ~~~P~~~~~~l~~L~~L~l~~c~l~~l~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~l~~~~~~~~~~~~~L~~L~l~~C 86 (254)
..+|..+ .++|++|+++++.++.++. .++.+++|++|++++. .++.+... ....+++|++|+++++
T Consensus 23 ~~ip~~~---~~~l~~L~L~~n~i~~ip~-------~~~~l~~L~~L~Ls~N-~i~~i~~~---~f~~l~~L~~L~Ls~N 88 (193)
T 2wfh_A 23 KVLPKGI---PRDVTELYLDGNQFTLVPK-------ELSNYKHLTLIDLSNN-RISTLSNQ---SFSNMTQLLTLILSYN 88 (193)
T ss_dssp SSCCSCC---CTTCCEEECCSSCCCSCCG-------GGGGCTTCCEEECCSS-CCCCCCTT---TTTTCTTCCEEECCSS
T ss_pred CcCCCCC---CCCCCEEECCCCcCchhHH-------HhhcccCCCEEECCCC-cCCEeCHh---HccCCCCCCEEECCCC
Confidence 3456543 3689999999998776543 3567899999999875 45554322 2456899999999996
Q ss_pred CCcceecCCcccccccccEEEeeccccccccccchhhccccccceeEEecCC
Q 038204 87 QNLIVLLPSSSVSFRNLTDLQVWGCKELMKLVTSSTAKSLVRLRIMKVCGSR 138 (254)
Q Consensus 87 ~~L~~l~p~~~~~~~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~C~ 138 (254)
.++.+.+..+..+++|+.|+++++ .++.++. .....+++|+.|++++.+
T Consensus 89 -~l~~i~~~~f~~l~~L~~L~L~~N-~l~~~~~-~~~~~l~~L~~L~L~~N~ 137 (193)
T 2wfh_A 89 -RLRCIPPRTFDGLKSLRLLSLHGN-DISVVPE-GAFNDLSALSHLAIGANP 137 (193)
T ss_dssp -CCCBCCTTTTTTCTTCCEEECCSS-CCCBCCT-TTTTTCTTCCEEECCSSC
T ss_pred -ccCEeCHHHhCCCCCCCEEECCCC-CCCeeCh-hhhhcCccccEEEeCCCC
Confidence 577776666788999999999987 4666543 346678999999998875
No 130
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.39 E-value=7.4e-07 Score=68.72 Aligned_cols=133 Identities=13% Similarity=0.131 Sum_probs=89.5
Q ss_pred CCCcccEEeccCCcccccccccCCccccCCCCccEEEEecCCCcceecCCcccccccccEEEeeccccccccccchhhcc
Q 038204 46 KFSQVKHLQPYKLNDLKQLWKQGSKLDFIFTNLEILRVYCCQNLIVLLPSSSVSFRNLTDLQVWGCKELMKLVTSSTAKS 125 (254)
Q Consensus 46 ~~~~L~~L~L~~~~~L~~l~~~~~~~~~~~~~L~~L~l~~C~~L~~l~p~~~~~~~~L~~L~i~~C~~L~~l~~~~~~~~ 125 (254)
.+++|++|.+.++ .++.+. . .....++|++|+++++ .++.+ +. +..+++|+.|+++++. ++.+++ .....
T Consensus 17 ~~~~L~~L~l~~n-~l~~i~--~--~~~~~~~L~~L~Ls~N-~l~~~-~~-l~~l~~L~~L~Ls~N~-l~~~~~-~~~~~ 86 (176)
T 1a9n_A 17 NAVRDRELDLRGY-KIPVIE--N--LGATLDQFDAIDFSDN-EIRKL-DG-FPLLRRLKTLLVNNNR-ICRIGE-GLDQA 86 (176)
T ss_dssp CTTSCEEEECTTS-CCCSCC--C--GGGGTTCCSEEECCSS-CCCEE-CC-CCCCSSCCEEECCSSC-CCEECS-CHHHH
T ss_pred CcCCceEEEeeCC-CCchhH--H--hhhcCCCCCEEECCCC-CCCcc-cc-cccCCCCCEEECCCCc-ccccCc-chhhc
Confidence 4788999999886 455541 1 1233458999999987 57766 44 7788999999998874 666543 33478
Q ss_pred ccccceeEEecCCCceeEeecCCCCccccccccccceeecccccccceecCC--CccccCCCcCeEEEeCCC
Q 038204 126 LVRLRIMKVCGSRAMTQVVTSEKDGAEDEIVFSNLKALTLLDLDSLTSFCSG--NYTFKFPSLRDLEVIGCP 195 (254)
Q Consensus 126 l~~L~~L~i~~C~~l~~i~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~--~~~~~~~sL~~L~i~~Cp 195 (254)
+++|+.|+++++. +..++. ......+++|+.|++.++ .+..++.. .....+|+|+.|++++++
T Consensus 87 l~~L~~L~L~~N~-i~~~~~-----~~~l~~l~~L~~L~l~~N-~i~~~~~~~~~~~~~l~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 87 LPDLTELILTNNS-LVELGD-----LDPLASLKSLTYLCILRN-PVTNKKHYRLYVIYKVPQVRVLDFQKVK 151 (176)
T ss_dssp CTTCCEEECCSCC-CCCGGG-----GGGGGGCTTCCEEECCSS-GGGGSTTHHHHHHHHCTTCSEETTEECC
T ss_pred CCCCCEEECCCCc-CCcchh-----hHhhhcCCCCCEEEecCC-CCCCcHhHHHHHHHHCCccceeCCCcCC
Confidence 8999999999885 433321 013346788899998887 34444331 013467888888887775
No 131
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=98.38 E-value=2.9e-08 Score=87.93 Aligned_cols=16 Identities=19% Similarity=0.057 Sum_probs=9.9
Q ss_pred hhCCCCcEEEEecccc
Q 038204 15 EKFRNLEILYLSRTSY 30 (254)
Q Consensus 15 ~~l~~L~~L~l~~c~l 30 (254)
..+++|++|++++|.+
T Consensus 53 ~~~~~L~~L~Ls~n~l 68 (461)
T 1z7x_W 53 RVNPALAELNLRSNEL 68 (461)
T ss_dssp HTCTTCCEEECTTCCC
T ss_pred HhCCCcCEEeCCCCcC
Confidence 4566666666666644
No 132
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.37 E-value=5.4e-06 Score=70.32 Aligned_cols=170 Identities=12% Similarity=0.055 Sum_probs=90.6
Q ss_pred CCCCcEEEEecccce--EecCCC--C----------ccccccCC--------CCcccEEeccCCcccccccccCCccccC
Q 038204 17 FRNLEILYLSRTSYT--EILSNE--G----------HSEKHVGK--------FSQVKHLQPYKLNDLKQLWKQGSKLDFI 74 (254)
Q Consensus 17 l~~L~~L~l~~c~l~--~l~~~~--~----------~~~~~~~~--------~~~L~~L~L~~~~~L~~l~~~~~~~~~~ 74 (254)
+++|+.|+|+++.+. ...... . ........ +++|++|.|.+ +++.+.... ...
T Consensus 48 l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I~~~aF~~~~~~~~~g~~~L~~l~L~~--~i~~I~~~a---F~~ 122 (329)
T 3sb4_A 48 FPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPAYAFSNVVNGVTKGKQTLEKVILSE--KIKNIEDAA---FKG 122 (329)
T ss_dssp CTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTTEECTTTTEEEETTEEEECTTCCC-CBCT--TCCEECTTT---TTT
T ss_pred hccCeEEecCcceeEEecCccccccccccccccccccCHHHhcccccccccccCCCcEEECCc--cccchhHHH---hhc
Confidence 899999999999665 221100 0 00011224 78888888877 677764433 345
Q ss_pred CCCccEEEEecCCCcceecCCcccccccccEEE-----------------eecccccccccc------------------
Q 038204 75 FTNLEILRVYCCQNLIVLLPSSSVSFRNLTDLQ-----------------VWGCKELMKLVT------------------ 119 (254)
Q Consensus 75 ~~~L~~L~l~~C~~L~~l~p~~~~~~~~L~~L~-----------------i~~C~~L~~l~~------------------ 119 (254)
+++|+++.+.+.. +..+.+..+..+.++..+. ..+|..++....
T Consensus 123 ~~~L~~l~l~~n~-i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~~ 201 (329)
T 3sb4_A 123 CDNLKICQIRKKT-APNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMGKLEDEIMKAGLQP 201 (329)
T ss_dssp CTTCCEEEBCCSS-CCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTCCHHHHHHHTTCCG
T ss_pred CcccceEEcCCCC-ccccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCCCcHHHHHhhcccCc
Confidence 8889999987642 3333333222233333222 222333320000
Q ss_pred -----------------chhhccccccceeEEecCCCceeEeecCCCCccccccccccceeecccccccceecCCCcccc
Q 038204 120 -----------------SSTAKSLVRLRIMKVCGSRAMTQVVTSEKDGAEDEIVFSNLKALTLLDLDSLTSFCSGNYTFK 182 (254)
Q Consensus 120 -----------------~~~~~~l~~L~~L~i~~C~~l~~i~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~ 182 (254)
......+++|+.+++.++. ++.|.. .....+++|+.+.+.+ +++.++.++ ...
T Consensus 202 ~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~-i~~I~~------~aF~~~~~L~~l~l~~--ni~~I~~~a-F~~ 271 (329)
T 3sb4_A 202 RDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTN-ATTIPD------FTFAQKKYLLKIKLPH--NLKTIGQRV-FSN 271 (329)
T ss_dssp GGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBC-CCEECT------TTTTTCTTCCEEECCT--TCCEECTTT-TTT
T ss_pred cccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCC-cceecH------hhhhCCCCCCEEECCc--ccceehHHH-hhC
Confidence 0000125666777766543 444432 1333466777777765 477776653 346
Q ss_pred CCCcC-eEEEeCCCCCcccCCCC
Q 038204 183 FPSLR-DLEVIGCPKMKIFTTGE 204 (254)
Q Consensus 183 ~~sL~-~L~i~~Cp~L~~lp~~~ 204 (254)
+++|+ .+++.+ +++.++.+.
T Consensus 272 ~~~L~~~l~l~~--~l~~I~~~a 292 (329)
T 3sb4_A 272 CGRLAGTLELPA--SVTAIEFGA 292 (329)
T ss_dssp CTTCCEEEEECT--TCCEECTTT
T ss_pred ChhccEEEEEcc--cceEEchhh
Confidence 67787 777766 677766543
No 133
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.37 E-value=1.8e-08 Score=79.52 Aligned_cols=108 Identities=17% Similarity=0.161 Sum_probs=73.0
Q ss_pred cCCCCcccEEeccCCcccccccccCCccccCCCCccEEEEecCCCcceecCCcccccccccEEEeeccccccccccchhh
Q 038204 44 VGKFSQVKHLQPYKLNDLKQLWKQGSKLDFIFTNLEILRVYCCQNLIVLLPSSSVSFRNLTDLQVWGCKELMKLVTSSTA 123 (254)
Q Consensus 44 ~~~~~~L~~L~L~~~~~L~~l~~~~~~~~~~~~~L~~L~l~~C~~L~~l~p~~~~~~~~L~~L~i~~C~~L~~l~~~~~~ 123 (254)
++.+++|++|+++++ .++.+. ....+++|++|++++| .++.+ |.....+++|+.|++++| +++.++ ..
T Consensus 44 ~~~l~~L~~L~ls~n-~l~~l~-----~~~~l~~L~~L~l~~n-~l~~l-~~~~~~~~~L~~L~L~~N-~l~~l~---~~ 111 (198)
T 1ds9_A 44 LSTLKACKHLALSTN-NIEKIS-----SLSGMENLRILSLGRN-LIKKI-ENLDAVADTLEELWISYN-QIASLS---GI 111 (198)
T ss_dssp HHHTTTCSEEECSEE-EESCCC-----CHHHHTTCCEEEEEEE-EECSC-SSHHHHHHHCSEEEEEEE-ECCCHH---HH
T ss_pred HhcCCCCCEEECCCC-CCcccc-----ccccCCCCCEEECCCC-Ccccc-cchhhcCCcCCEEECcCC-cCCcCC---cc
Confidence 456888888888775 344432 2456788899988887 45555 554556788999999887 455553 46
Q ss_pred ccccccceeEEecCCCceeEeecCCCCccccccccccceeeccccc
Q 038204 124 KSLVRLRIMKVCGSRAMTQVVTSEKDGAEDEIVFSNLKALTLLDLD 169 (254)
Q Consensus 124 ~~l~~L~~L~i~~C~~l~~i~~~~~~~~~~~~~~~~L~~L~l~~c~ 169 (254)
..+++|+.|+++++. +..+... .....+++|+.|++.+++
T Consensus 112 ~~l~~L~~L~l~~N~-i~~~~~~-----~~l~~l~~L~~L~l~~N~ 151 (198)
T 1ds9_A 112 EKLVNLRVLYMSNNK-ITNWGEI-----DKLAALDKLEDLLLAGNP 151 (198)
T ss_dssp HHHHHSSEEEESEEE-CCCHHHH-----HHHTTTTTCSEEEECSCH
T ss_pred ccCCCCCEEECCCCc-CCchhHH-----HHHhcCCCCCEEEecCCc
Confidence 678888999998874 3322110 123457888999988773
No 134
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=98.22 E-value=4.2e-08 Score=86.90 Aligned_cols=118 Identities=14% Similarity=0.088 Sum_probs=62.7
Q ss_pred HHhhCCCCcEEEEecccceEecCCCCccccccCCCCcccEEeccCCcccccccccCCccccCCC----CccEEEEecCCC
Q 038204 13 LLEKFRNLEILYLSRTSYTEILSNEGHSEKHVGKFSQVKHLQPYKLNDLKQLWKQGSKLDFIFT----NLEILRVYCCQN 88 (254)
Q Consensus 13 ~~~~l~~L~~L~l~~c~l~~l~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~l~~~~~~~~~~~~----~L~~L~l~~C~~ 88 (254)
++..+++|++|++++|++..... ......+..+++|++|+++++. +...... .....++ +|++|++++|.
T Consensus 23 ~~~~~~~L~~L~L~~~~l~~~~~--~~l~~~l~~~~~L~~L~Ls~n~-l~~~~~~--~l~~~l~~~~~~L~~L~L~~n~- 96 (461)
T 1z7x_W 23 LLPLLQQCQVVRLDDCGLTEARC--KDISSALRVNPALAELNLRSNE-LGDVGVH--CVLQGLQTPSCKIQKLSLQNCC- 96 (461)
T ss_dssp HHHHHTTCSEEEEESSCCCHHHH--HHHHHHHHTCTTCCEEECTTCC-CHHHHHH--HHHHTTCSTTCCCCEEECTTSC-
T ss_pred HHhhcCCccEEEccCCCCCHHHH--HHHHHHHHhCCCcCEEeCCCCc-CChHHHH--HHHHHHhhCCCceeEEEccCCC-
Confidence 45789999999999997652200 0000123346888888887753 3321000 0011223 68888888774
Q ss_pred ccee----cCCcccccccccEEEeeccccccccccchhhc----cccccceeEEecC
Q 038204 89 LIVL----LPSSSVSFRNLTDLQVWGCKELMKLVTSSTAK----SLVRLRIMKVCGS 137 (254)
Q Consensus 89 L~~l----~p~~~~~~~~L~~L~i~~C~~L~~l~~~~~~~----~l~~L~~L~i~~C 137 (254)
+.+. .+..+..+++|++|++++|. ++......... ..++|++|++++|
T Consensus 97 i~~~~~~~l~~~l~~~~~L~~L~Ls~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n 152 (461)
T 1z7x_W 97 LTGAGCGVLSSTLRTLPTLQELHLSDNL-LGDAGLQLLCEGLLDPQCRLEKLQLEYC 152 (461)
T ss_dssp CBGGGHHHHHHHTTSCTTCCEEECCSSB-CHHHHHHHHHHHHTSTTCCCCEEECTTS
T ss_pred CCHHHHHHHHHHHccCCceeEEECCCCc-CchHHHHHHHHHHhcCCCcceEEECCCC
Confidence 4321 12334566777777777765 43322111111 2345666666666
No 135
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.19 E-value=9.4e-07 Score=76.39 Aligned_cols=169 Identities=15% Similarity=0.122 Sum_probs=90.8
Q ss_pred HhhCCCCcEEEEecccceE--e-cCCCCccccccCCCCcccEEeccCCcccccccccCCccccCCCCccEEEEecCCCcc
Q 038204 14 LEKFRNLEILYLSRTSYTE--I-LSNEGHSEKHVGKFSQVKHLQPYKLNDLKQLWKQGSKLDFIFTNLEILRVYCCQNLI 90 (254)
Q Consensus 14 ~~~l~~L~~L~l~~c~l~~--l-~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~l~~~~~~~~~~~~~L~~L~l~~C~~L~ 90 (254)
+.++++|+.|.|.+...++ + +...+.....+..+|+|+.|.|.++..++ + . ....++|++|.|..|. +.
T Consensus 135 ~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~-l--~----~~~~~~L~~L~L~~~~-l~ 206 (362)
T 2ra8_A 135 KEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLS-I--G----KKPRPNLKSLEIISGG-LP 206 (362)
T ss_dssp HHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCB-C--C----SCBCTTCSEEEEECSB-CC
T ss_pred hhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCce-e--c----cccCCCCcEEEEecCC-CC
Confidence 3467899999886542110 0 00001111123457899999987763322 1 1 1136889999998764 32
Q ss_pred eecCCc--ccccccccEEEeecccc-------ccccccchhhccccccceeEEecCCCceeEeecCCCCccccccccccc
Q 038204 91 VLLPSS--SVSFRNLTDLQVWGCKE-------LMKLVTSSTAKSLVRLRIMKVCGSRAMTQVVTSEKDGAEDEIVFSNLK 161 (254)
Q Consensus 91 ~l~p~~--~~~~~~L~~L~i~~C~~-------L~~l~~~~~~~~l~~L~~L~i~~C~~l~~i~~~~~~~~~~~~~~~~L~ 161 (254)
.-.... ...+|+|++|+++.+.+ +..+........+|+|+.|.+.+|.-...... .-.....+|+|+
T Consensus 207 ~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~----~la~a~~~~~L~ 282 (362)
T 2ra8_A 207 DSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVE----MFLESDILPQLE 282 (362)
T ss_dssp HHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHH----HHHHCSSGGGCS
T ss_pred hHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHH----HHHhCccCCCCC
Confidence 110000 12588999998864321 22221111123578999999988863211100 000112578999
Q ss_pred eeecccccccceecCCC---ccccCCCcCeEEEeCCC
Q 038204 162 ALTLLDLDSLTSFCSGN---YTFKFPSLRDLEVIGCP 195 (254)
Q Consensus 162 ~L~l~~c~~L~~~~~~~---~~~~~~sL~~L~i~~Cp 195 (254)
+|+++.+ .+.+..... ....+++|+.|++++|.
T Consensus 283 ~LdLs~n-~L~d~G~~~L~~~L~~l~~L~~L~L~~n~ 318 (362)
T 2ra8_A 283 TMDISAG-VLTDEGARLLLDHVDKIKHLKFINMKYNY 318 (362)
T ss_dssp EEECCSS-CCBHHHHHHHHTTHHHHTTCSEEECCSBB
T ss_pred EEECCCC-CCChHHHHHHHhhcccCCcceEEECCCCc
Confidence 9999653 565522110 11356889999998884
No 136
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.18 E-value=3.3e-06 Score=77.28 Aligned_cols=127 Identities=16% Similarity=0.162 Sum_probs=93.1
Q ss_pred CCCcEEEEecccceEecCCCCccccccCCCCcccEEeccCCcccccccccCCccccCCCCccEEEEecCCCcceecCCcc
Q 038204 18 RNLEILYLSRTSYTEILSNEGHSEKHVGKFSQVKHLQPYKLNDLKQLWKQGSKLDFIFTNLEILRVYCCQNLIVLLPSSS 97 (254)
Q Consensus 18 ~~L~~L~l~~c~l~~l~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~l~~~~~~~~~~~~~L~~L~l~~C~~L~~l~p~~~ 97 (254)
..|+.|++++|.++.++. ++.+++|+.|+++++ .++.++. ....+++|+.|+++++ +++.+ | .+
T Consensus 441 ~~L~~L~Ls~n~l~~lp~--------~~~l~~L~~L~Ls~N-~l~~lp~----~~~~l~~L~~L~Ls~N-~l~~l-p-~l 504 (567)
T 1dce_A 441 ADVRVLHLAHKDLTVLCH--------LEQLLLVTHLDLSHN-RLRALPP----ALAALRCLEVLQASDN-ALENV-D-GV 504 (567)
T ss_dssp TTCSEEECTTSCCSSCCC--------GGGGTTCCEEECCSS-CCCCCCG----GGGGCTTCCEEECCSS-CCCCC-G-GG
T ss_pred cCceEEEecCCCCCCCcC--------ccccccCcEeecCcc-cccccch----hhhcCCCCCEEECCCC-CCCCC-c-cc
Confidence 469999999998877653 567999999999886 4555532 3567999999999986 57776 6 48
Q ss_pred cccccccEEEeeccccccccccchhhccccccceeEEecCCCceeEeecCCCCccccccccccceeec
Q 038204 98 VSFRNLTDLQVWGCKELMKLVTSSTAKSLVRLRIMKVCGSRAMTQVVTSEKDGAEDEIVFSNLKALTL 165 (254)
Q Consensus 98 ~~~~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~C~~l~~i~~~~~~~~~~~~~~~~L~~L~l 165 (254)
..+++|+.|+++++ +++.+..+.....+++|+.|++++++ +..++... ......+|+|+.|++
T Consensus 505 ~~l~~L~~L~Ls~N-~l~~~~~p~~l~~l~~L~~L~L~~N~-l~~~~~~~---~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 505 ANLPRLQELLLCNN-RLQQSAAIQPLVSCPRLVLLNLQGNS-LCQEEGIQ---ERLAEMLPSVSSILT 567 (567)
T ss_dssp TTCSSCCEEECCSS-CCCSSSTTGGGGGCTTCCEEECTTSG-GGGSSSCT---THHHHHCTTCSEEEC
T ss_pred CCCCCCcEEECCCC-CCCCCCCcHHHhcCCCCCEEEecCCc-CCCCccHH---HHHHHHCcccCccCC
Confidence 89999999999987 56666312457789999999999986 43332210 112234788988853
No 137
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.18 E-value=1.3e-05 Score=68.02 Aligned_cols=91 Identities=18% Similarity=0.098 Sum_probs=61.1
Q ss_pred cccccEEEeeccccccccccchhhccccccceeEEecCCCceeEeecCCCCccccccccccc-eeecccccccceecCCC
Q 038204 100 FRNLTDLQVWGCKELMKLVTSSTAKSLVRLRIMKVCGSRAMTQVVTSEKDGAEDEIVFSNLK-ALTLLDLDSLTSFCSGN 178 (254)
Q Consensus 100 ~~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~C~~l~~i~~~~~~~~~~~~~~~~L~-~L~l~~c~~L~~~~~~~ 178 (254)
+++|+.+++.++. ++.++. ....++++|+.+++.+. ++.|.. .....+++|+ .+.+.+ +++.+..++
T Consensus 225 ~~~L~~l~L~~n~-i~~I~~-~aF~~~~~L~~l~l~~n--i~~I~~------~aF~~~~~L~~~l~l~~--~l~~I~~~a 292 (329)
T 3sb4_A 225 MPNLVSLDISKTN-ATTIPD-FTFAQKKYLLKIKLPHN--LKTIGQ------RVFSNCGRLAGTLELPA--SVTAIEFGA 292 (329)
T ss_dssp CTTCCEEECTTBC-CCEECT-TTTTTCTTCCEEECCTT--CCEECT------TTTTTCTTCCEEEEECT--TCCEECTTT
T ss_pred cCCCeEEECCCCC-cceecH-hhhhCCCCCCEEECCcc--cceehH------HHhhCChhccEEEEEcc--cceEEchhh
Confidence 6788888887653 556543 34667888898888774 655532 1334467787 888876 788887654
Q ss_pred ccccCCCcCeEEEeCCCCCcccCCCC
Q 038204 179 YTFKFPSLRDLEVIGCPKMKIFTTGE 204 (254)
Q Consensus 179 ~~~~~~sL~~L~i~~Cp~L~~lp~~~ 204 (254)
...+++|+.+++.+. +++.++.+.
T Consensus 293 -F~~c~~L~~l~l~~n-~i~~I~~~a 316 (329)
T 3sb4_A 293 -FMGCDNLRYVLATGD-KITTLGDEL 316 (329)
T ss_dssp -TTTCTTEEEEEECSS-CCCEECTTT
T ss_pred -hhCCccCCEEEeCCC-ccCccchhh
Confidence 356788888887543 577776653
No 138
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.14 E-value=2.3e-07 Score=73.07 Aligned_cols=109 Identities=16% Similarity=0.112 Sum_probs=81.1
Q ss_pred ccCCCCccEEEEecCCCcceecCCcccccccccEEEeeccccccccccchhhccccccceeEEecCCCceeEeecCCCCc
Q 038204 72 DFIFTNLEILRVYCCQNLIVLLPSSSVSFRNLTDLQVWGCKELMKLVTSSTAKSLVRLRIMKVCGSRAMTQVVTSEKDGA 151 (254)
Q Consensus 72 ~~~~~~L~~L~l~~C~~L~~l~p~~~~~~~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~C~~l~~i~~~~~~~~ 151 (254)
...+++|++|+++++ .++.+ | .+..+++|+.|++++|. ++.++ .....+++|+.|++++|. +..++
T Consensus 44 ~~~l~~L~~L~ls~n-~l~~l-~-~~~~l~~L~~L~l~~n~-l~~l~--~~~~~~~~L~~L~L~~N~-l~~l~------- 109 (198)
T 1ds9_A 44 LSTLKACKHLALSTN-NIEKI-S-SLSGMENLRILSLGRNL-IKKIE--NLDAVADTLEELWISYNQ-IASLS------- 109 (198)
T ss_dssp HHHTTTCSEEECSEE-EESCC-C-CHHHHTTCCEEEEEEEE-ECSCS--SHHHHHHHCSEEEEEEEE-CCCHH-------
T ss_pred HhcCCCCCEEECCCC-CCccc-c-ccccCCCCCEEECCCCC-ccccc--chhhcCCcCCEEECcCCc-CCcCC-------
Confidence 456889999999987 56666 5 48889999999999884 66664 355677999999999984 54432
Q ss_pred cccccccccceeecccccccceecCCCccccCCCcCeEEEeCCCC
Q 038204 152 EDEIVFSNLKALTLLDLDSLTSFCSGNYTFKFPSLRDLEVIGCPK 196 (254)
Q Consensus 152 ~~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~~sL~~L~i~~Cp~ 196 (254)
....+++|+.|++.++ +++.++.......+++|++|++.+++-
T Consensus 110 -~~~~l~~L~~L~l~~N-~i~~~~~~~~l~~l~~L~~L~l~~N~l 152 (198)
T 1ds9_A 110 -GIEKLVNLRVLYMSNN-KITNWGEIDKLAALDKLEDLLLAGNPL 152 (198)
T ss_dssp -HHHHHHHSSEEEESEE-ECCCHHHHHHHTTTTTCSEEEECSCHH
T ss_pred -ccccCCCCCEEECCCC-cCCchhHHHHHhcCCCCCEEEecCCcc
Confidence 2446789999999986 555544311235689999999999863
No 139
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=98.08 E-value=4.8e-07 Score=77.94 Aligned_cols=37 Identities=11% Similarity=-0.109 Sum_probs=21.1
Q ss_pred cccceeecccccccceecCC---CccccCCCcCeEEEeCCC
Q 038204 158 SNLKALTLLDLDSLTSFCSG---NYTFKFPSLRDLEVIGCP 195 (254)
Q Consensus 158 ~~L~~L~l~~c~~L~~~~~~---~~~~~~~sL~~L~i~~Cp 195 (254)
++|+.|++.++ .++..+.. .....+++|+.|++++|.
T Consensus 225 ~~L~~L~Ls~N-~l~~~~~~~l~~~~~~l~~L~~L~L~~n~ 264 (362)
T 3goz_A 225 NHVVSLNLCLN-CLHGPSLENLKLLKDSLKHLQTVYLDYDI 264 (362)
T ss_dssp TTCCEEECCSS-CCCCCCHHHHHHTTTTTTTCSEEEEEHHH
T ss_pred CCceEEECcCC-CCCcHHHHHHHHHHhcCCCccEEEeccCC
Confidence 46777777765 44433221 011345678888887775
No 140
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.07 E-value=1.1e-05 Score=61.76 Aligned_cols=103 Identities=17% Similarity=0.093 Sum_probs=60.1
Q ss_pred CcEEEEecccceEecCCCCccccccCCCCcccEEeccCCcccccccccCCccccCCCCccEEEEecCCCcceecCCcccc
Q 038204 20 LEILYLSRTSYTEILSNEGHSEKHVGKFSQVKHLQPYKLNDLKQLWKQGSKLDFIFTNLEILRVYCCQNLIVLLPSSSVS 99 (254)
Q Consensus 20 L~~L~l~~c~l~~l~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~l~~~~~~~~~~~~~L~~L~l~~C~~L~~l~p~~~~~ 99 (254)
.+.++++++++++++. +..++|++|++++. .++.+... ....+++|++|+++++ +++.+.+..+..
T Consensus 11 ~~~l~~s~n~l~~ip~---------~~~~~l~~L~L~~N-~i~~~~~~---~~~~l~~L~~L~Ls~N-~l~~l~~~~f~~ 76 (170)
T 3g39_A 11 GTTVDCSGKSLASVPT---------GIPTTTQVLYLYDN-QITKLEPG---VFDRLTQLTRLDLDNN-QLTVLPAGVFDK 76 (170)
T ss_dssp TTEEECTTSCCSSCCS---------CCCTTCSEEECCSS-CCCCCCTT---TTTTCTTCSEEECCSS-CCCCCCTTTTTT
T ss_pred CCEEEeCCCCcCccCc---------cCCCCCcEEEcCCC-cCCccChh---hhcCcccCCEEECCCC-CcCccChhhccC
Confidence 3566666666665543 11467777777654 44443221 1345677777777765 466664443456
Q ss_pred cccccEEEeeccccccccccchhhccccccceeEEecCC
Q 038204 100 FRNLTDLQVWGCKELMKLVTSSTAKSLVRLRIMKVCGSR 138 (254)
Q Consensus 100 ~~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~C~ 138 (254)
+++|++|+++++ +++.+++ .....+++|+.|++++.+
T Consensus 77 l~~L~~L~L~~N-~l~~~~~-~~~~~l~~L~~L~L~~N~ 113 (170)
T 3g39_A 77 LTQLTQLSLNDN-QLKSIPR-GAFDNLKSLTHIWLLNNP 113 (170)
T ss_dssp CTTCCEEECCSS-CCCCCCT-TTTTTCTTCCEEECCSSC
T ss_pred CCCCCEEECCCC-ccCEeCH-HHhcCCCCCCEEEeCCCC
Confidence 777777777765 4555433 234566777777776654
No 141
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.06 E-value=1.3e-05 Score=61.64 Aligned_cols=102 Identities=12% Similarity=0.076 Sum_probs=58.6
Q ss_pred cEEEEecccceEecCCCCccccccCCCCcccEEeccCCcccccccccCCccccCCCCccEEEEecCCCcceecCCccccc
Q 038204 21 EILYLSRTSYTEILSNEGHSEKHVGKFSQVKHLQPYKLNDLKQLWKQGSKLDFIFTNLEILRVYCCQNLIVLLPSSSVSF 100 (254)
Q Consensus 21 ~~L~l~~c~l~~l~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~l~~~~~~~~~~~~~L~~L~l~~C~~L~~l~p~~~~~~ 100 (254)
+.++++++++++++. .+ .++|++|++++. .++.+... ....+++|++|+++++ +++.+.+..+..+
T Consensus 15 ~~l~~~~n~l~~iP~-------~~--~~~L~~L~Ls~N-~l~~~~~~---~~~~l~~L~~L~Ls~N-~l~~i~~~~~~~l 80 (174)
T 2r9u_A 15 TLVNCQNIRLASVPA-------GI--PTDKQRLWLNNN-QITKLEPG---VFDHLVNLQQLYFNSN-KLTAIPTGVFDKL 80 (174)
T ss_dssp SEEECCSSCCSSCCS-------CC--CTTCSEEECCSS-CCCCCCTT---TTTTCTTCCEEECCSS-CCCCCCTTTTTTC
T ss_pred cEEEeCCCCCCccCC-------Cc--CCCCcEEEeCCC-CccccCHH---HhcCCcCCCEEECCCC-CCCccChhHhCCc
Confidence 556666665655544 12 467777777664 34443221 2345667777777765 5666633333567
Q ss_pred ccccEEEeeccccccccccchhhccccccceeEEecCC
Q 038204 101 RNLTDLQVWGCKELMKLVTSSTAKSLVRLRIMKVCGSR 138 (254)
Q Consensus 101 ~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~C~ 138 (254)
++|+.|+++++ +++.++. .....+++|+.|++++++
T Consensus 81 ~~L~~L~L~~N-~l~~l~~-~~~~~l~~L~~L~L~~N~ 116 (174)
T 2r9u_A 81 TQLTQLDLNDN-HLKSIPR-GAFDNLKSLTHIYLYNNP 116 (174)
T ss_dssp TTCCEEECCSS-CCCCCCT-TTTTTCTTCSEEECCSSC
T ss_pred chhhEEECCCC-ccceeCH-HHhccccCCCEEEeCCCC
Confidence 77777777665 4555433 234566777777776654
No 142
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=97.89 E-value=2.3e-05 Score=60.33 Aligned_cols=92 Identities=15% Similarity=0.160 Sum_probs=69.6
Q ss_pred ceechHHHhhCCCCcEEEEecccceEecCCCCccccccCCCCcccEEeccCCcccccccccCCccccCCCCccEEEEecC
Q 038204 7 ACFPLGLLEKFRNLEILYLSRTSYTEILSNEGHSEKHVGKFSQVKHLQPYKLNDLKQLWKQGSKLDFIFTNLEILRVYCC 86 (254)
Q Consensus 7 ~~~P~~~~~~l~~L~~L~l~~c~l~~l~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~l~~~~~~~~~~~~~L~~L~l~~C 86 (254)
..+|..+ .++|+.|+++++.++.+++ ..++.+++|++|+|++. +++.+... ....+++|++|+++++
T Consensus 25 ~~iP~~~---~~~L~~L~Ls~N~l~~~~~------~~~~~l~~L~~L~Ls~N-~l~~i~~~---~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 25 ASVPAGI---PTDKQRLWLNNNQITKLEP------GVFDHLVNLQQLYFNSN-KLTAIPTG---VFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SSCCSCC---CTTCSEEECCSSCCCCCCT------TTTTTCTTCCEEECCSS-CCCCCCTT---TTTTCTTCCEEECCSS
T ss_pred CccCCCc---CCCCcEEEeCCCCccccCH------HHhcCCcCCCEEECCCC-CCCccChh---HhCCcchhhEEECCCC
Confidence 4466654 3899999999998887754 13567999999999886 66665332 1356899999999985
Q ss_pred CCcceecCCcccccccccEEEeeccc
Q 038204 87 QNLIVLLPSSSVSFRNLTDLQVWGCK 112 (254)
Q Consensus 87 ~~L~~l~p~~~~~~~~L~~L~i~~C~ 112 (254)
+++.+.+..+..+++|+.|++++.+
T Consensus 92 -~l~~l~~~~~~~l~~L~~L~L~~N~ 116 (174)
T 2r9u_A 92 -HLKSIPRGAFDNLKSLTHIYLYNNP 116 (174)
T ss_dssp -CCCCCCTTTTTTCTTCSEEECCSSC
T ss_pred -ccceeCHHHhccccCCCEEEeCCCC
Confidence 6777755447789999999998875
No 143
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=97.80 E-value=5.5e-05 Score=64.34 Aligned_cols=102 Identities=17% Similarity=0.037 Sum_probs=72.4
Q ss_pred EEeccCCcccccccccCCccccCCCCccEEEEecCCCcceecCCcccccccccEEEeeccccccccccchhhccccccce
Q 038204 52 HLQPYKLNDLKQLWKQGSKLDFIFTNLEILRVYCCQNLIVLLPSSSVSFRNLTDLQVWGCKELMKLVTSSTAKSLVRLRI 131 (254)
Q Consensus 52 ~L~L~~~~~L~~l~~~~~~~~~~~~~L~~L~l~~C~~L~~l~p~~~~~~~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~ 131 (254)
.++..+...|+.++. ...+++|++|+|++++++..+.+..+..+++|+.|+++++ +++.+++ ....++++|+.
T Consensus 12 ~v~~~~~n~l~~ip~-----l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~-~~~~~l~~L~~ 84 (347)
T 2ifg_A 12 GLRCTRDGALDSLHH-----LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKS-GLRFVAP-DAFHFTPRLSR 84 (347)
T ss_dssp CEECCSSCCCTTTTT-----SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSS-CCCEECT-TGGGSCSCCCE
T ss_pred EEEcCCCCCCCccCC-----CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCC-ccceeCH-HHhcCCcCCCE
Confidence 345544335665522 4567889999999888999996666788999999999987 5777654 34578999999
Q ss_pred eEEecCCCceeEeecCCCCccccccccccceeecccc
Q 038204 132 MKVCGSRAMTQVVTSEKDGAEDEIVFSNLKALTLLDL 168 (254)
Q Consensus 132 L~i~~C~~l~~i~~~~~~~~~~~~~~~~L~~L~l~~c 168 (254)
|+++++. +..++. .......|+.|.+.+.
T Consensus 85 L~l~~N~-l~~~~~-------~~~~~~~L~~l~l~~N 113 (347)
T 2ifg_A 85 LNLSFNA-LESLSW-------KTVQGLSLQELVLSGN 113 (347)
T ss_dssp EECCSSC-CSCCCS-------TTTCSCCCCEEECCSS
T ss_pred EeCCCCc-cceeCH-------HHcccCCceEEEeeCC
Confidence 9999974 555543 1111223899988765
No 144
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.79 E-value=2.7e-05 Score=67.23 Aligned_cols=140 Identities=21% Similarity=0.158 Sum_probs=84.1
Q ss_pred HHHhhCCCCcEEEEecc-cceEecCCCCccccccCCCCcccEEeccCCcccccccccCCccccCCCCccEEEEecCCC--
Q 038204 12 GLLEKFRNLEILYLSRT-SYTEILSNEGHSEKHVGKFSQVKHLQPYKLNDLKQLWKQGSKLDFIFTNLEILRVYCCQN-- 88 (254)
Q Consensus 12 ~~~~~l~~L~~L~l~~c-~l~~l~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~l~~~~~~~~~~~~~L~~L~l~~C~~-- 88 (254)
.++..+++|+.|.|++| .+. +.. + ..++|++|+|..+. +..-... .-....+|+|+.|+|+.+.+
T Consensus 166 ~ll~~~P~L~~L~L~g~~~l~-l~~--------~-~~~~L~~L~L~~~~-l~~~~l~-~l~~~~lp~L~~L~L~~~~~~~ 233 (362)
T 2ra8_A 166 PVLDAMPLLNNLKIKGTNNLS-IGK--------K-PRPNLKSLEIISGG-LPDSVVE-DILGSDLPNLEKLVLYVGVEDY 233 (362)
T ss_dssp HHHHTCTTCCEEEEECCBTCB-CCS--------C-BCTTCSEEEEECSB-CCHHHHH-HHHHSBCTTCCEEEEECBCGGG
T ss_pred HHHhcCCCCcEEEEeCCCCce-ecc--------c-cCCCCcEEEEecCC-CChHHHH-HHHHccCCCCcEEEEecccccc
Confidence 45678999999999998 543 211 2 27899999997653 3221000 00123689999999974322
Q ss_pred -----cceecCC-cccccccccEEEeecccccccccc-chhhccccccceeEEecCCCceeEeecCCCC--ccccccccc
Q 038204 89 -----LIVLLPS-SSVSFRNLTDLQVWGCKELMKLVT-SSTAKSLVRLRIMKVCGSRAMTQVVTSEKDG--AEDEIVFSN 159 (254)
Q Consensus 89 -----L~~l~p~-~~~~~~~L~~L~i~~C~~L~~l~~-~~~~~~l~~L~~L~i~~C~~l~~i~~~~~~~--~~~~~~~~~ 159 (254)
+..+.+. ....||+|+.|.+.+|.--..... ...++.+++|++|+++.+. +... +.. ......+++
T Consensus 234 ~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~-L~d~----G~~~L~~~L~~l~~ 308 (362)
T 2ra8_A 234 GFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGV-LTDE----GARLLLDHVDKIKH 308 (362)
T ss_dssp TCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSC-CBHH----HHHHHHTTHHHHTT
T ss_pred ccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCC-CChH----HHHHHHhhcccCCc
Confidence 2222221 023589999999999864321110 1112468999999997653 4221 000 012245789
Q ss_pred cceeecccc
Q 038204 160 LKALTLLDL 168 (254)
Q Consensus 160 L~~L~l~~c 168 (254)
|+.|++.+|
T Consensus 309 L~~L~L~~n 317 (362)
T 2ra8_A 309 LKFINMKYN 317 (362)
T ss_dssp CSEEECCSB
T ss_pred ceEEECCCC
Confidence 999999877
No 145
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=97.79 E-value=4.2e-05 Score=58.50 Aligned_cols=92 Identities=18% Similarity=0.183 Sum_probs=69.4
Q ss_pred ceechHHHhhCCCCcEEEEecccceEecCCCCccccccCCCCcccEEeccCCcccccccccCCccccCCCCccEEEEecC
Q 038204 7 ACFPLGLLEKFRNLEILYLSRTSYTEILSNEGHSEKHVGKFSQVKHLQPYKLNDLKQLWKQGSKLDFIFTNLEILRVYCC 86 (254)
Q Consensus 7 ~~~P~~~~~~l~~L~~L~l~~c~l~~l~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~l~~~~~~~~~~~~~L~~L~l~~C 86 (254)
..+|..+ .++|+.|+++++.++.+.+ ..++.+++|++|+|++. +++.+... ....+++|++|++++.
T Consensus 22 ~~ip~~~---~~~l~~L~L~~N~i~~~~~------~~~~~l~~L~~L~Ls~N-~l~~l~~~---~f~~l~~L~~L~L~~N 88 (170)
T 3g39_A 22 ASVPTGI---PTTTQVLYLYDNQITKLEP------GVFDRLTQLTRLDLDNN-QLTVLPAG---VFDKLTQLTQLSLNDN 88 (170)
T ss_dssp SSCCSCC---CTTCSEEECCSSCCCCCCT------TTTTTCTTCSEEECCSS-CCCCCCTT---TTTTCTTCCEEECCSS
T ss_pred CccCccC---CCCCcEEEcCCCcCCccCh------hhhcCcccCCEEECCCC-CcCccChh---hccCCCCCCEEECCCC
Confidence 3456544 3889999999998887754 13556999999999876 56665332 1356899999999986
Q ss_pred CCcceecCCcccccccccEEEeeccc
Q 038204 87 QNLIVLLPSSSVSFRNLTDLQVWGCK 112 (254)
Q Consensus 87 ~~L~~l~p~~~~~~~~L~~L~i~~C~ 112 (254)
+++.+.+..+..+++|+.|++++.+
T Consensus 89 -~l~~~~~~~~~~l~~L~~L~L~~N~ 113 (170)
T 3g39_A 89 -QLKSIPRGAFDNLKSLTHIWLLNNP 113 (170)
T ss_dssp -CCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred -ccCEeCHHHhcCCCCCCEEEeCCCC
Confidence 6777755557789999999998764
No 146
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=97.77 E-value=0.00044 Score=60.37 Aligned_cols=41 Identities=12% Similarity=0.104 Sum_probs=21.6
Q ss_pred ccccceeecccccccceecCCCccccCCCcCeEEEeCCCCCcccCC
Q 038204 157 FSNLKALTLLDLDSLTSFCSGNYTFKFPSLRDLEVIGCPKMKIFTT 202 (254)
Q Consensus 157 ~~~L~~L~l~~c~~L~~~~~~~~~~~~~sL~~L~i~~Cp~L~~lp~ 202 (254)
+++|+.+.+.+ +++.+..++ ...+ +|+.+++.+. .+..++.
T Consensus 322 c~~L~~l~lp~--~l~~I~~~a-F~~~-~L~~l~l~~n-~~~~l~~ 362 (401)
T 4fdw_A 322 NRKVTQLTIPA--NVTQINFSA-FNNT-GIKEVKVEGT-TPPQVFE 362 (401)
T ss_dssp CCSCCEEEECT--TCCEECTTS-SSSS-CCCEEEECCS-SCCBCCC
T ss_pred CCCccEEEECc--cccEEcHHh-CCCC-CCCEEEEcCC-CCccccc
Confidence 45566666632 455555543 2334 7777777654 3334443
No 147
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=97.67 E-value=0.00012 Score=62.33 Aligned_cols=101 Identities=17% Similarity=0.092 Sum_probs=74.1
Q ss_pred EEEecc-cceEecCCCCccccccCCCCcccEEeccCCcccccccccCCccccCCCCccEEEEecCCCcceecCCcccccc
Q 038204 23 LYLSRT-SYTEILSNEGHSEKHVGKFSQVKHLQPYKLNDLKQLWKQGSKLDFIFTNLEILRVYCCQNLIVLLPSSSVSFR 101 (254)
Q Consensus 23 L~l~~c-~l~~l~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~l~~~~~~~~~~~~~L~~L~l~~C~~L~~l~p~~~~~~~ 101 (254)
++.++. +++.++. ++.+++|++|+|++...++.+... ....+++|+.|+|+++ +|..+.|..+..++
T Consensus 13 v~~~~~n~l~~ip~--------l~~~~~L~~L~l~~~n~l~~~~~~---~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~ 80 (347)
T 2ifg_A 13 LRCTRDGALDSLHH--------LPGAENLTELYIENQQHLQHLELR---DLRGLGELRNLTIVKS-GLRFVAPDAFHFTP 80 (347)
T ss_dssp EECCSSCCCTTTTT--------SCSCSCCSEEECCSCSSCCEECGG---GSCSCCCCSEEECCSS-CCCEECTTGGGSCS
T ss_pred EEcCCCCCCCccCC--------CCCCCCeeEEEccCCCCCCCcChh---HhccccCCCEEECCCC-ccceeCHHHhcCCc
Confidence 444554 5555443 556789999999876778776432 2456899999999997 68888776678899
Q ss_pred cccEEEeeccccccccccchhhccccccceeEEecCC
Q 038204 102 NLTDLQVWGCKELMKLVTSSTAKSLVRLRIMKVCGSR 138 (254)
Q Consensus 102 ~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~C~ 138 (254)
+|+.|++++. +|+.+++ .....++ |+.|++.+++
T Consensus 81 ~L~~L~l~~N-~l~~~~~-~~~~~~~-L~~l~l~~N~ 114 (347)
T 2ifg_A 81 RLSRLNLSFN-ALESLSW-KTVQGLS-LQELVLSGNP 114 (347)
T ss_dssp CCCEEECCSS-CCSCCCS-TTTCSCC-CCEEECCSSC
T ss_pred CCCEEeCCCC-ccceeCH-HHcccCC-ceEEEeeCCC
Confidence 9999999986 5776654 2334444 9999998865
No 148
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=97.58 E-value=1e-06 Score=76.50 Aligned_cols=168 Identities=12% Similarity=-0.033 Sum_probs=98.4
Q ss_pred CCCCcEEEEecccceEecCCCCccccccC-CCCcccEEeccCCcccccccccCCccccCCCCccEEEEecCCCcceecCC
Q 038204 17 FRNLEILYLSRTSYTEILSNEGHSEKHVG-KFSQVKHLQPYKLNDLKQLWKQGSKLDFIFTNLEILRVYCCQNLIVLLPS 95 (254)
Q Consensus 17 l~~L~~L~l~~c~l~~l~~~~~~~~~~~~-~~~~L~~L~L~~~~~L~~l~~~~~~~~~~~~~L~~L~l~~C~~L~~l~p~ 95 (254)
+++|+.|++++|.+..... ......+. ..++|++|+|+++. +.... .......+++|++|++++| ++.+....
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~--~~l~~~L~~~~~~L~~L~Ls~n~-l~~~~--~~~l~~~L~~L~~L~Ls~n-~l~~~~~~ 144 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKC--TVVAAVLGSGRHALDEVNLASCQ-LDPAG--LRTLLPVFLRARKLGLQLN-SLGPEACK 144 (372)
T ss_dssp HTTCCEEECTTSCCCHHHH--HHHHHHHSSCSSCEEEEECTTCC-CCHHH--HHHTHHHHHTEEEEECCSS-CCCHHHHH
T ss_pred HhhCCEEEecCCCCCHHHH--HHHHHHHhhCCCCceEEEecCCC-CCHHH--HHHHHHHHHhccHhhcCCC-CCCHHHHH
Confidence 5789999999996643211 00000111 24699999998874 43211 0111234678999999998 44432111
Q ss_pred cc-----cccccccEEEeeccccccccccc---hhhccccccceeEEecCCCceeEeecCCCCccccccccccceeeccc
Q 038204 96 SS-----VSFRNLTDLQVWGCKELMKLVTS---STAKSLVRLRIMKVCGSRAMTQVVTSEKDGAEDEIVFSNLKALTLLD 167 (254)
Q Consensus 96 ~~-----~~~~~L~~L~i~~C~~L~~l~~~---~~~~~l~~L~~L~i~~C~~l~~i~~~~~~~~~~~~~~~~L~~L~l~~ 167 (254)
.+ ...++|++|++++|. +++.... ......++|++|++++|. +...-. ..........++|+.|++.+
T Consensus 145 ~L~~~L~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~L~~~~~L~~L~Ls~N~-l~~~g~--~~L~~~L~~~~~L~~L~Ls~ 220 (372)
T 3un9_A 145 DLRDLLLHDQCQITTLRLSNNP-LTAAGVAVLMEGLAGNTSVTHLSLLHTG-LGDEGL--ELLAAQLDRNRQLQELNVAY 220 (372)
T ss_dssp HHHHHHHSTTCCCCEEECCSSC-CHHHHHHHHHHHHHTCSSCCEEECTTSS-CHHHHH--HHHHHHGGGCSCCCEEECCS
T ss_pred HHHHHHHhcCCccceeeCCCCC-CChHHHHHHHHHHhcCCCcCEEeCCCCC-CCcHHH--HHHHHHHhcCCCcCeEECCC
Confidence 11 235789999999994 5443221 123567889999999986 321100 00001223457899999998
Q ss_pred ccccceecCCCc---cccCCCcCeEEEeCCC
Q 038204 168 LDSLTSFCSGNY---TFKFPSLRDLEVIGCP 195 (254)
Q Consensus 168 c~~L~~~~~~~~---~~~~~sL~~L~i~~Cp 195 (254)
| ++++...... ....++|++|++++|+
T Consensus 221 N-~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~ 250 (372)
T 3un9_A 221 N-GAGDTAALALARAAREHPSLELLHLYFNE 250 (372)
T ss_dssp S-CCCHHHHHHHHHHHHHCSSCCEEECTTSS
T ss_pred C-CCCHHHHHHHHHHHHhCCCCCEEeccCCC
Confidence 7 5554322111 1246889999999985
No 149
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=97.14 E-value=0.025 Score=49.18 Aligned_cols=167 Identities=11% Similarity=0.055 Sum_probs=112.3
Q ss_pred eechHHHhhCCCCcEEEEecccceEecCCCCccccccCCCCcccEEeccCCcccccccccCCccccCCCCccEEEEecCC
Q 038204 8 CFPLGLLEKFRNLEILYLSRTSYTEILSNEGHSEKHVGKFSQVKHLQPYKLNDLKQLWKQGSKLDFIFTNLEILRVYCCQ 87 (254)
Q Consensus 8 ~~P~~~~~~l~~L~~L~l~~c~l~~l~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~l~~~~~~~~~~~~~L~~L~l~~C~ 87 (254)
.++...+..+++|+.+++.+++++.+... .-...+|+.+.|.+ +++.+.... ...+++|+.+.+.+
T Consensus 170 ~I~~~aF~~c~~L~~l~l~~n~l~~I~~~-------aF~~~~L~~l~lp~--~l~~I~~~a---F~~~~~L~~l~l~~-- 235 (401)
T 4fdw_A 170 QLKEDIFYYCYNLKKADLSKTKITKLPAS-------TFVYAGIEEVLLPV--TLKEIGSQA---FLKTSQLKTIEIPE-- 235 (401)
T ss_dssp EECSSTTTTCTTCCEEECTTSCCSEECTT-------TTTTCCCSEEECCT--TCCEECTTT---TTTCTTCCCEECCT--
T ss_pred EehHHHhhCcccCCeeecCCCcceEechh-------hEeecccCEEEeCC--chheehhhH---hhCCCCCCEEecCC--
Confidence 34555567899999999998888887652 22357899999963 466664333 35588999999985
Q ss_pred CcceecCCcccccccccEEEeeccccccccccchhhccccccceeEEecCCC----ceeEeecCCCCcccccccccccee
Q 038204 88 NLIVLLPSSSVSFRNLTDLQVWGCKELMKLVTSSTAKSLVRLRIMKVCGSRA----MTQVVTSEKDGAEDEIVFSNLKAL 163 (254)
Q Consensus 88 ~L~~l~p~~~~~~~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~C~~----l~~i~~~~~~~~~~~~~~~~L~~L 163 (254)
+++.+....+.. .+|+.+.+.+ +++.+.. ....++++|+.+.+.+... +..+.. .....+++|+.+
T Consensus 236 ~l~~I~~~aF~~-~~L~~i~lp~--~i~~I~~-~aF~~c~~L~~l~l~~~~~~~~~~~~I~~------~aF~~c~~L~~l 305 (401)
T 4fdw_A 236 NVSTIGQEAFRE-SGITTVKLPN--GVTNIAS-RAFYYCPELAEVTTYGSTFNDDPEAMIHP------YCLEGCPKLARF 305 (401)
T ss_dssp TCCEECTTTTTT-CCCSEEEEET--TCCEECT-TTTTTCTTCCEEEEESSCCCCCTTCEECT------TTTTTCTTCCEE
T ss_pred CccCcccccccc-CCccEEEeCC--CccEECh-hHhhCCCCCCEEEeCCccccCCcccEECH------HHhhCCccCCeE
Confidence 677775543444 7899999943 4555543 3456788999999876531 111211 233456788888
Q ss_pred ecccccccceecCCCccccCCCcCeEEEeCCCCCcccCCC
Q 038204 164 TLLDLDSLTSFCSGNYTFKFPSLRDLEVIGCPKMKIFTTG 203 (254)
Q Consensus 164 ~l~~c~~L~~~~~~~~~~~~~sL~~L~i~~Cp~L~~lp~~ 203 (254)
.+. .+++.+..++ ...+++|+.+.+.+ +++.++.+
T Consensus 306 ~l~--~~i~~I~~~a-F~~c~~L~~l~lp~--~l~~I~~~ 340 (401)
T 4fdw_A 306 EIP--ESIRILGQGL-LGGNRKVTQLTIPA--NVTQINFS 340 (401)
T ss_dssp CCC--TTCCEECTTT-TTTCCSCCEEEECT--TCCEECTT
T ss_pred EeC--CceEEEhhhh-hcCCCCccEEEECc--cccEEcHH
Confidence 887 4688887764 34678899998843 36665544
No 150
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=96.40 E-value=0.00022 Score=61.61 Aligned_cols=145 Identities=14% Similarity=-0.004 Sum_probs=86.7
Q ss_pred CCCCcEEEEecccceEecCCCCccccccCCCCcccEEeccCCcccccccccCCc-c-ccCCCCccEEEEecCCCcceec-
Q 038204 17 FRNLEILYLSRTSYTEILSNEGHSEKHVGKFSQVKHLQPYKLNDLKQLWKQGSK-L-DFIFTNLEILRVYCCQNLIVLL- 93 (254)
Q Consensus 17 l~~L~~L~l~~c~l~~l~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~l~~~~~~-~-~~~~~~L~~L~l~~C~~L~~l~- 93 (254)
.++|++|++++|.+..... ......+++|++|+|+++ .+......... . ....++|++|++++|. +++..
T Consensus 100 ~~~L~~L~Ls~n~l~~~~~-----~~l~~~L~~L~~L~Ls~n-~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~-l~~~~~ 172 (372)
T 3un9_A 100 RHALDEVNLASCQLDPAGL-----RTLLPVFLRARKLGLQLN-SLGPEACKDLRDLLLHDQCQITTLRLSNNP-LTAAGV 172 (372)
T ss_dssp SSCEEEEECTTCCCCHHHH-----HHTHHHHHTEEEEECCSS-CCCHHHHHHHHHHHHSTTCCCCEEECCSSC-CHHHHH
T ss_pred CCCceEEEecCCCCCHHHH-----HHHHHHHHhccHhhcCCC-CCCHHHHHHHHHHHHhcCCccceeeCCCCC-CChHHH
Confidence 3799999999996642100 001124678999999987 44332110000 0 1346889999999984 54321
Q ss_pred ---CCcccccccccEEEeecccccccccc---chhhccccccceeEEecCCCceeEeecCCCCccccccccccceeeccc
Q 038204 94 ---PSSSVSFRNLTDLQVWGCKELMKLVT---SSTAKSLVRLRIMKVCGSRAMTQVVTSEKDGAEDEIVFSNLKALTLLD 167 (254)
Q Consensus 94 ---p~~~~~~~~L~~L~i~~C~~L~~l~~---~~~~~~l~~L~~L~i~~C~~l~~i~~~~~~~~~~~~~~~~L~~L~l~~ 167 (254)
+..+...++|++|++++|. +.+... .......++|++|++++|. +..... ..........++|++|++.+
T Consensus 173 ~~l~~~L~~~~~L~~L~Ls~N~-l~~~g~~~L~~~L~~~~~L~~L~Ls~N~-i~~~g~--~~l~~~L~~~~~L~~L~Ls~ 248 (372)
T 3un9_A 173 AVLMEGLAGNTSVTHLSLLHTG-LGDEGLELLAAQLDRNRQLQELNVAYNG-AGDTAA--LALARAAREHPSLELLHLYF 248 (372)
T ss_dssp HHHHHHHHTCSSCCEEECTTSS-CHHHHHHHHHHHGGGCSCCCEEECCSSC-CCHHHH--HHHHHHHHHCSSCCEEECTT
T ss_pred HHHHHHHhcCCCcCEEeCCCCC-CCcHHHHHHHHHHhcCCCcCeEECCCCC-CCHHHH--HHHHHHHHhCCCCCEEeccC
Confidence 1113567899999999985 554321 1234566789999999985 321100 00001122458999999998
Q ss_pred ccccce
Q 038204 168 LDSLTS 173 (254)
Q Consensus 168 c~~L~~ 173 (254)
+ .+..
T Consensus 249 N-~i~~ 253 (372)
T 3un9_A 249 N-ELSS 253 (372)
T ss_dssp S-SCCH
T ss_pred C-CCCH
Confidence 7 3543
No 151
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=94.90 E-value=0.026 Score=46.29 Aligned_cols=39 Identities=23% Similarity=0.126 Sum_probs=21.1
Q ss_pred hhCCCCcEEEEecccceEecCCCCccccccCCCCcccEEeccC
Q 038204 15 EKFRNLEILYLSRTSYTEILSNEGHSEKHVGKFSQVKHLQPYK 57 (254)
Q Consensus 15 ~~l~~L~~L~l~~c~l~~l~~~~~~~~~~~~~~~~L~~L~L~~ 57 (254)
..+++|++|+|+++.+..+.... ..++.+++|+.|+|++
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~----~~~~~l~~L~~L~Ls~ 205 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMS----SIVQKAPNLKILNLSG 205 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGT----THHHHSTTCCEEECTT
T ss_pred hhCCCCCEEECCCCCCCCCccch----hHHhhCCCCCEEECCC
Confidence 35677777777777555432210 0122466666666654
No 152
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=94.85 E-value=0.0074 Score=49.59 Aligned_cols=38 Identities=21% Similarity=0.333 Sum_probs=18.5
Q ss_pred ccccccEEEeeccccccccccc-hhhccccccceeEEecC
Q 038204 99 SFRNLTDLQVWGCKELMKLVTS-STAKSLVRLRIMKVCGS 137 (254)
Q Consensus 99 ~~~~L~~L~i~~C~~L~~l~~~-~~~~~l~~L~~L~i~~C 137 (254)
.+++|+.|++++. ++..+... .....+++|+.|++++.
T Consensus 168 ~l~~L~~L~Ls~N-~l~~l~~l~~~~~~l~~L~~L~Ls~N 206 (267)
T 3rw6_A 168 NIPELLSLNLSNN-RLYRLDDMSSIVQKAPNLKILNLSGN 206 (267)
T ss_dssp HCTTCCEEECTTS-CCCCCGGGTTHHHHSTTCCEEECTTS
T ss_pred hCCCCCEEECCCC-CCCCCccchhHHhhCCCCCEEECCCC
Confidence 3556666666554 23333211 22345566666666554
No 153
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=94.44 E-value=0.0045 Score=47.75 Aligned_cols=34 Identities=15% Similarity=0.014 Sum_probs=15.9
Q ss_pred cccccEEEeeccccccccccc---hhhccccccceeEE
Q 038204 100 FRNLTDLQVWGCKELMKLVTS---STAKSLVRLRIMKV 134 (254)
Q Consensus 100 ~~~L~~L~i~~C~~L~~l~~~---~~~~~l~~L~~L~i 134 (254)
.++|++|++++|. +.+.... ......+.|++|++
T Consensus 92 n~~L~~L~L~~N~-i~~~g~~~l~~~L~~n~~L~~L~L 128 (185)
T 1io0_A 92 NNTLKSLNVESNF-ISGSGILALVEALQSNTSLIELRI 128 (185)
T ss_dssp CSSCCEEECCSSC-CCHHHHHHHHHGGGGCSSCCEEEC
T ss_pred CCCcCEEECcCCc-CCHHHHHHHHHHHHhCCCceEEEe
Confidence 3556666666553 3322111 12233445666666
No 154
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=93.72 E-value=0.012 Score=45.23 Aligned_cols=116 Identities=14% Similarity=-0.012 Sum_probs=60.2
Q ss_pred cCCCCccEEEEecCCCcceec----CCcccccccccEEEeeccccccccccch---hhccccccceeEEecCCCceeEee
Q 038204 73 FIFTNLEILRVYCCQNLIVLL----PSSSVSFRNLTDLQVWGCKELMKLVTSS---TAKSLVRLRIMKVCGSRAMTQVVT 145 (254)
Q Consensus 73 ~~~~~L~~L~l~~C~~L~~l~----p~~~~~~~~L~~L~i~~C~~L~~l~~~~---~~~~l~~L~~L~i~~C~~l~~i~~ 145 (254)
...++|++|++++|..+.+-. ...+...++|++|++++|. +.+..... .....+.|++|++++|. +..
T Consensus 33 ~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~-i~~~g~~~l~~~L~~n~~L~~L~L~~N~-i~~--- 107 (185)
T 1io0_A 33 NNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTR-SNDPVAFALAEMLKVNNTLKSLNVESNF-ISG--- 107 (185)
T ss_dssp TTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSC-CCHHHHHHHHHHHHHCSSCCEEECCSSC-CCH---
T ss_pred hcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCC-CChHHHHHHHHHHHhCCCcCEEECcCCc-CCH---
Confidence 345667777777664443211 1113345788888888874 44322111 23345678999998885 211
Q ss_pred cCCCC--ccccccccccceeec--ccccccceecCC---CccccCCCcCeEEEeCCC
Q 038204 146 SEKDG--AEDEIVFSNLKALTL--LDLDSLTSFCSG---NYTFKFPSLRDLEVIGCP 195 (254)
Q Consensus 146 ~~~~~--~~~~~~~~~L~~L~l--~~c~~L~~~~~~---~~~~~~~sL~~L~i~~Cp 195 (254)
.+.. .......+.|++|++ .++ .+..-... ......++|++|++++|.
T Consensus 108 -~g~~~l~~~L~~n~~L~~L~L~~~~N-~i~~~g~~~l~~~L~~n~~L~~L~L~~n~ 162 (185)
T 1io0_A 108 -SGILALVEALQSNTSLIELRIDNQSQ-PLGNNVEMEIANMLEKNTTLLKFGYHFTQ 162 (185)
T ss_dssp -HHHHHHHHGGGGCSSCCEEECCCCSS-CCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred -HHHHHHHHHHHhCCCceEEEecCCCC-CCCHHHHHHHHHHHHhCCCcCEEeccCCC
Confidence 1000 012234467888888 433 34332110 011234678888877663
No 155
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=92.96 E-value=0.39 Score=41.14 Aligned_cols=81 Identities=11% Similarity=0.035 Sum_probs=47.7
Q ss_pred CCCcccEEeccCCcccccccccCCccccCCCCccEEEEecCCCcceecCCcccccccccEEEeeccccccccccchhhcc
Q 038204 46 KFSQVKHLQPYKLNDLKQLWKQGSKLDFIFTNLEILRVYCCQNLIVLLPSSSVSFRNLTDLQVWGCKELMKLVTSSTAKS 125 (254)
Q Consensus 46 ~~~~L~~L~L~~~~~L~~l~~~~~~~~~~~~~L~~L~l~~C~~L~~l~p~~~~~~~~L~~L~i~~C~~L~~l~~~~~~~~ 125 (254)
.+.+|+.+.+.+ +++.+.... -..+.+|+.+.|.+ +++.+....+.++.+|+.+.+.. +++.+.. ....+
T Consensus 295 ~~~~L~~i~l~~--~i~~I~~~a---F~~c~~L~~i~lp~--~v~~I~~~aF~~c~~L~~i~lp~--~l~~I~~-~aF~~ 364 (394)
T 4fs7_A 295 GCSSLTEVKLLD--SVKFIGEEA---FESCTSLVSIDLPY--LVEEIGKRSFRGCTSLSNINFPL--SLRKIGA-NAFQG 364 (394)
T ss_dssp TCTTCCEEEECT--TCCEECTTT---TTTCTTCCEECCCT--TCCEECTTTTTTCTTCCEECCCT--TCCEECT-TTBTT
T ss_pred cccccccccccc--ccceechhh---hcCCCCCCEEEeCC--cccEEhHHhccCCCCCCEEEECc--cccEehH-HHhhC
Confidence 467777777743 455553322 33467777777753 46666555556677788777753 2555433 23456
Q ss_pred ccccceeEEec
Q 038204 126 LVRLRIMKVCG 136 (254)
Q Consensus 126 l~~L~~L~i~~ 136 (254)
+++|+.+++..
T Consensus 365 C~~L~~i~lp~ 375 (394)
T 4fs7_A 365 CINLKKVELPK 375 (394)
T ss_dssp CTTCCEEEEEG
T ss_pred CCCCCEEEECC
Confidence 67777776653
No 156
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=92.84 E-value=0.71 Score=39.48 Aligned_cols=104 Identities=7% Similarity=0.043 Sum_probs=58.5
Q ss_pred CCCcccEEeccCCcccccccccCCccccCCCCccEEEEecCCCcceecCCcccccccccEEEeeccccccccccchhhcc
Q 038204 46 KFSQVKHLQPYKLNDLKQLWKQGSKLDFIFTNLEILRVYCCQNLIVLLPSSSVSFRNLTDLQVWGCKELMKLVTSSTAKS 125 (254)
Q Consensus 46 ~~~~L~~L~L~~~~~L~~l~~~~~~~~~~~~~L~~L~l~~C~~L~~l~p~~~~~~~~L~~L~i~~C~~L~~l~~~~~~~~ 125 (254)
.+.+|+.+.+.+ .+..+.... ...+++|+.+.+. .+++.+....+..+.+|+.+.|.. +++.+.. ....+
T Consensus 263 ~c~~L~~i~lp~--~~~~I~~~a---F~~c~~L~~i~l~--~~i~~I~~~aF~~c~~L~~i~lp~--~v~~I~~-~aF~~ 332 (394)
T 4gt6_A 263 SCAYLASVKMPD--SVVSIGTGA---FMNCPALQDIEFS--SRITELPESVFAGCISLKSIDIPE--GITQILD-DAFAG 332 (394)
T ss_dssp TCSSCCEEECCT--TCCEECTTT---TTTCTTCCEEECC--TTCCEECTTTTTTCTTCCEEECCT--TCCEECT-TTTTT
T ss_pred ecccccEEeccc--ccceecCcc---cccccccccccCC--CcccccCceeecCCCCcCEEEeCC--cccEehH-hHhhC
Confidence 466777777743 233332222 3456777777775 356666444456677888887753 3555433 23456
Q ss_pred ccccceeEEecCCCceeEeecCCCCccccccccccceeeccc
Q 038204 126 LVRLRIMKVCGSRAMTQVVTSEKDGAEDEIVFSNLKALTLLD 167 (254)
Q Consensus 126 l~~L~~L~i~~C~~l~~i~~~~~~~~~~~~~~~~L~~L~l~~ 167 (254)
|.+|+.+.|-+ +++.|-. .....+.+|+.+.+.+
T Consensus 333 C~~L~~i~ip~--sv~~I~~------~aF~~C~~L~~i~~~~ 366 (394)
T 4gt6_A 333 CEQLERIAIPS--SVTKIPE------SAFSNCTALNNIEYSG 366 (394)
T ss_dssp CTTCCEEEECT--TCCBCCG------GGGTTCTTCCEEEESS
T ss_pred CCCCCEEEECc--ccCEEhH------hHhhCCCCCCEEEECC
Confidence 67777777743 2333211 1333456778777765
No 157
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=92.13 E-value=0.71 Score=39.48 Aligned_cols=43 Identities=9% Similarity=0.054 Sum_probs=26.4
Q ss_pred cccccceeecccccccceecCCCccccCCCcCeEEEeCCCCCcccCCC
Q 038204 156 VFSNLKALTLLDLDSLTSFCSGNYTFKFPSLRDLEVIGCPKMKIFTTG 203 (254)
Q Consensus 156 ~~~~L~~L~l~~c~~L~~~~~~~~~~~~~sL~~L~i~~Cp~L~~lp~~ 203 (254)
.+.+|+.+.+. .+++.+..++ ...|.+|+.+.+.+ .++.++.+
T Consensus 318 ~c~~L~~i~lp--~~v~~I~~~a-F~~c~~L~~i~lp~--~l~~I~~~ 360 (394)
T 4fs7_A 318 SCTSLVSIDLP--YLVEEIGKRS-FRGCTSLSNINFPL--SLRKIGAN 360 (394)
T ss_dssp TCTTCCEECCC--TTCCEECTTT-TTTCTTCCEECCCT--TCCEECTT
T ss_pred CCCCCCEEEeC--CcccEEhHHh-ccCCCCCCEEEECc--cccEehHH
Confidence 45677777774 3466666543 34567788887743 36666554
No 158
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=91.12 E-value=0.7 Score=39.52 Aligned_cols=110 Identities=10% Similarity=0.075 Sum_probs=72.3
Q ss_pred hHHHhhCCCCcEEEEecccceEecCCCCccccccCCCCcccEEeccCCcccccccccCCccccCCCCccEEEEecCCCcc
Q 038204 11 LGLLEKFRNLEILYLSRTSYTEILSNEGHSEKHVGKFSQVKHLQPYKLNDLKQLWKQGSKLDFIFTNLEILRVYCCQNLI 90 (254)
Q Consensus 11 ~~~~~~l~~L~~L~l~~c~l~~l~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~l~~~~~~~~~~~~~L~~L~l~~C~~L~ 90 (254)
...+..+.+|+.+.+.+. +..+.. .....+++|+.+.+.. .++.+.... -..+.+|+++.|.+ +++
T Consensus 258 ~~aF~~c~~L~~i~lp~~-~~~I~~------~aF~~c~~L~~i~l~~--~i~~I~~~a---F~~c~~L~~i~lp~--~v~ 323 (394)
T 4gt6_A 258 THAFDSCAYLASVKMPDS-VVSIGT------GAFMNCPALQDIEFSS--RITELPESV---FAGCISLKSIDIPE--GIT 323 (394)
T ss_dssp TTTTTTCSSCCEEECCTT-CCEECT------TTTTTCTTCCEEECCT--TCCEECTTT---TTTCTTCCEEECCT--TCC
T ss_pred cceeeecccccEEecccc-cceecC------cccccccccccccCCC--cccccCcee---ecCCCCcCEEEeCC--ccc
Confidence 344556788888887654 223322 1233578899998853 456654333 34578899999874 577
Q ss_pred eecCCcccccccccEEEeeccccccccccchhhccccccceeEEecC
Q 038204 91 VLLPSSSVSFRNLTDLQVWGCKELMKLVTSSTAKSLVRLRIMKVCGS 137 (254)
Q Consensus 91 ~l~p~~~~~~~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~C 137 (254)
.+....+..+.+|+.+.|.. +++.+.. ....+|.+|+.+++.+.
T Consensus 324 ~I~~~aF~~C~~L~~i~ip~--sv~~I~~-~aF~~C~~L~~i~~~~~ 367 (394)
T 4gt6_A 324 QILDDAFAGCEQLERIAIPS--SVTKIPE-SAFSNCTALNNIEYSGS 367 (394)
T ss_dssp EECTTTTTTCTTCCEEEECT--TCCBCCG-GGGTTCTTCCEEEESSC
T ss_pred EehHhHhhCCCCCCEEEECc--ccCEEhH-hHhhCCCCCCEEEECCc
Confidence 77655577789999999953 4555543 34567888888888764
No 159
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=90.77 E-value=2.7 Score=35.38 Aligned_cols=102 Identities=11% Similarity=0.054 Sum_probs=48.2
Q ss_pred CCCccEEEEecCCCcceecCCcccccccccEEEeeccccccccccchhhccccccceeEEecCCCceeEeecCCCCcccc
Q 038204 75 FTNLEILRVYCCQNLIVLLPSSSVSFRNLTDLQVWGCKELMKLVTSSTAKSLVRLRIMKVCGSRAMTQVVTSEKDGAEDE 154 (254)
Q Consensus 75 ~~~L~~L~l~~C~~L~~l~p~~~~~~~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~C~~l~~i~~~~~~~~~~~ 154 (254)
+.+|+.+.+.. +++.+.......+.+|+.+.+.. +++.+.. ....++.+|+.+.+.+.. ++.|.. ...
T Consensus 239 ~~~L~~i~lp~--~v~~I~~~aF~~~~~l~~i~l~~--~i~~i~~-~aF~~c~~L~~i~l~~~~-i~~I~~------~aF 306 (379)
T 4h09_A 239 MKALDEIAIPK--NVTSIGSFLLQNCTALKTLNFYA--KVKTVPY-LLCSGCSNLTKVVMDNSA-IETLEP------RVF 306 (379)
T ss_dssp CSSCCEEEECT--TCCEECTTTTTTCTTCCEEEECC--CCSEECT-TTTTTCTTCCEEEECCTT-CCEECT------TTT
T ss_pred CccceEEEcCC--CccEeCccccceeehhccccccc--cceeccc-cccccccccccccccccc-cceehh------hhh
Confidence 44555555543 34444333344555666666532 3333322 233455666666664321 333211 122
Q ss_pred ccccccceeecccccccceecCCCccccCCCcCeEEE
Q 038204 155 IVFSNLKALTLLDLDSLTSFCSGNYTFKFPSLRDLEV 191 (254)
Q Consensus 155 ~~~~~L~~L~l~~c~~L~~~~~~~~~~~~~sL~~L~i 191 (254)
..+.+|+.+.+- .+++.+...+ ...|.+|+.+.+
T Consensus 307 ~~c~~L~~i~lp--~~l~~I~~~a-F~~C~~L~~i~i 340 (379)
T 4h09_A 307 MDCVKLSSVTLP--TALKTIQVYA-FKNCKALSTISY 340 (379)
T ss_dssp TTCTTCCEEECC--TTCCEECTTT-TTTCTTCCCCCC
T ss_pred cCCCCCCEEEcC--ccccEEHHHH-hhCCCCCCEEEE
Confidence 334566766664 2466665543 234555666554
No 160
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=89.38 E-value=2.2 Score=35.96 Aligned_cols=139 Identities=15% Similarity=0.085 Sum_probs=82.5
Q ss_pred HHhhCCCCcEEEEecccceEecCCCCccccccCCCCcccEEeccCCcccccccccCCccccCCCCccEEEEecCCCccee
Q 038204 13 LLEKFRNLEILYLSRTSYTEILSNEGHSEKHVGKFSQVKHLQPYKLNDLKQLWKQGSKLDFIFTNLEILRVYCCQNLIVL 92 (254)
Q Consensus 13 ~~~~l~~L~~L~l~~c~l~~l~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~l~~~~~~~~~~~~~L~~L~l~~C~~L~~l 92 (254)
......+|+.+.+... ++.+.. .....+..|+.+.+-+ +++.+... ....+.+|+.+.+.. +++.+
T Consensus 212 ~f~~~~~l~~i~~~~~-~~~i~~------~~f~~~~~L~~i~lp~--~v~~I~~~---aF~~~~~l~~i~l~~--~i~~i 277 (379)
T 4h09_A 212 GFSYGKNLKKITITSG-VTTLGD------GAFYGMKALDEIAIPK--NVTSIGSF---LLQNCTALKTLNFYA--KVKTV 277 (379)
T ss_dssp TTTTCSSCSEEECCTT-CCEECT------TTTTTCSSCCEEEECT--TCCEECTT---TTTTCTTCCEEEECC--CCSEE
T ss_pred ccccccccceeeeccc-eeEEcc------ccccCCccceEEEcCC--CccEeCcc---ccceeehhccccccc--cceec
Confidence 3345677777777553 333322 1123477888888843 35555322 234577888888853 56666
Q ss_pred cCCcccccccccEEEeeccccccccccchhhccccccceeEEecCCCceeEeecCCCCccccccccccceeecccccccc
Q 038204 93 LPSSSVSFRNLTDLQVWGCKELMKLVTSSTAKSLVRLRIMKVCGSRAMTQVVTSEKDGAEDEIVFSNLKALTLLDLDSLT 172 (254)
Q Consensus 93 ~p~~~~~~~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~C~~l~~i~~~~~~~~~~~~~~~~L~~L~l~~c~~L~ 172 (254)
....+..+++|+.+.+.+. .++.+.. ....++.+|+.+.|.+ +++.|-. .....+.+|+.+.+- .+++
T Consensus 278 ~~~aF~~c~~L~~i~l~~~-~i~~I~~-~aF~~c~~L~~i~lp~--~l~~I~~------~aF~~C~~L~~i~ip--~~v~ 345 (379)
T 4h09_A 278 PYLLCSGCSNLTKVVMDNS-AIETLEP-RVFMDCVKLSSVTLPT--ALKTIQV------YAFKNCKALSTISYP--KSIT 345 (379)
T ss_dssp CTTTTTTCTTCCEEEECCT-TCCEECT-TTTTTCTTCCEEECCT--TCCEECT------TTTTTCTTCCCCCCC--TTCC
T ss_pred ccccccccccccccccccc-ccceehh-hhhcCCCCCCEEEcCc--cccEEHH------HHhhCCCCCCEEEEC--CccC
Confidence 5444667889999988653 3444433 3456778888888753 3444422 123345678877774 3577
Q ss_pred eecCC
Q 038204 173 SFCSG 177 (254)
Q Consensus 173 ~~~~~ 177 (254)
.+..+
T Consensus 346 ~I~~~ 350 (379)
T 4h09_A 346 LIESG 350 (379)
T ss_dssp EECTT
T ss_pred EEchh
Confidence 77654
No 161
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=66.33 E-value=3 Score=29.67 Aligned_cols=36 Identities=11% Similarity=-0.163 Sum_probs=20.1
Q ss_pred CCcccEEeccCCcccccccccCCccccCCCCccEEEEecC
Q 038204 47 FSQVKHLQPYKLNDLKQLWKQGSKLDFIFTNLEILRVYCC 86 (254)
Q Consensus 47 ~~~L~~L~L~~~~~L~~l~~~~~~~~~~~~~L~~L~l~~C 86 (254)
.++|++|+|++. +++.+..+. ...+++|++|.|.+.
T Consensus 30 p~~l~~L~Ls~N-~l~~l~~~~---f~~l~~L~~L~L~~N 65 (130)
T 3rfe_A 30 PVDTTELVLTGN-NLTALPPGL---LDALPALRTAHLGAN 65 (130)
T ss_dssp CTTCSEEECTTS-CCSSCCTTT---GGGCTTCCEEECCSS
T ss_pred CcCCCEEECCCC-cCCccChhh---hhhccccCEEEecCC
Confidence 346777777553 455543222 234667777777653
No 162
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=65.21 E-value=5.7 Score=28.19 Aligned_cols=35 Identities=17% Similarity=0.081 Sum_probs=18.6
Q ss_pred CCccEEEEecCCCcceecCCcccccccccEEEeecc
Q 038204 76 TNLEILRVYCCQNLIVLLPSSSVSFRNLTDLQVWGC 111 (254)
Q Consensus 76 ~~L~~L~l~~C~~L~~l~p~~~~~~~~L~~L~i~~C 111 (254)
++|++|+|++. +|+.+.+..+..+++|+.|++.+.
T Consensus 31 ~~l~~L~Ls~N-~l~~l~~~~f~~l~~L~~L~L~~N 65 (130)
T 3rfe_A 31 VDTTELVLTGN-NLTALPPGLLDALPALRTAHLGAN 65 (130)
T ss_dssp TTCSEEECTTS-CCSSCCTTTGGGCTTCCEEECCSS
T ss_pred cCCCEEECCCC-cCCccChhhhhhccccCEEEecCC
Confidence 35666666553 455553333445556666665543
No 163
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=27.23 E-value=71 Score=21.26 Aligned_cols=12 Identities=17% Similarity=0.102 Sum_probs=5.4
Q ss_pred ccccccccEEEe
Q 038204 97 SVSFRNLTDLQV 108 (254)
Q Consensus 97 ~~~~~~L~~L~i 108 (254)
+..+.+|+.+.+
T Consensus 39 F~~C~~L~~i~~ 50 (100)
T 2lz0_A 39 FSGCTALEKLIL 50 (100)
T ss_dssp STTCTTCCCEEE
T ss_pred HhccCCccEEEE
Confidence 334444444444
Done!