BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 038205
(375 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1Z6T|A Chain A, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|B Chain B, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|C Chain C, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|D Chain D, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
Length = 591
Score = 67.8 bits (164), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 72/250 (28%), Positives = 118/250 (47%), Gaps = 32/250 (12%)
Query: 117 IPRFFSSFETTESACNQIIEALKK--DSTKMVGLHGLGGVGKTTLAKFVGNQLRQNNIFD 174
+P+ F T + N I + L K V +HG+ G GK+ LA +R +++ +
Sbjct: 119 VPQRPVVFVTRKKLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLA---AEAVRDHSLLE 175
Query: 175 KV---GIATVS---QDPS--IINVQSELVK-----SLGWALTEKDEEDRADRLRLMFSES 221
G+ VS QD S ++ +Q+ + S L EE + DRLR++
Sbjct: 176 GCFPGGVHWVSVGKQDKSGLLMKLQNLCTRLDQDESFSQRLPLNIEEAK-DRLRILMLRK 234
Query: 222 KSRKILVILDDVWKELDLETIGIPVGDRDNCCKILLTTRLQQVC-YRMGCDPRIKLDA-L 279
R +L ILDDVW L+ D+ C+ILLTTR + V MG + +++ L
Sbjct: 235 HPRSLL-ILDDVWDSWVLKAF-------DSQCQILLTTRDKSVTDSVMGPKYVVPVESSL 286
Query: 280 DQAEGLDLLRKHAGIDVADKTMTDVSKRVADECKGLPLAIKAVGSALRLRTADEWNVALD 339
+ +GL++L + AD + + + + ECKG PL + +G+ LR + W L
Sbjct: 287 GKEKGLEILSLFVNMKKAD--LPEQAHSIIKECKGSPLVVSLIGALLR-DFPNRWEYYLK 343
Query: 340 KLQNAKLDKI 349
+LQN + +I
Sbjct: 344 QLQNKQFKRI 353
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 73/253 (28%), Positives = 119/253 (47%), Gaps = 32/253 (12%)
Query: 114 EMPIPRFFSSFETTESACNQIIEALKK--DSTKMVGLHGLGGVGKTTLAKFVGNQLRQNN 171
E +P+ F T + N I + L K V +HG+ G GK+ LA +R ++
Sbjct: 122 EGGVPQRPVVFVTRKKLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLA---AEAVRDHS 178
Query: 172 IFDKV---GIATVS---QDPS--IINVQSELVK-----SLGWALTEKDEEDRADRLRLMF 218
+ + G+ VS QD S ++ +Q+ + S L EE + DRLR++
Sbjct: 179 LLEGCFPGGVHWVSVGKQDKSGLLMKLQNLCTRLDQDESFSQRLPLNIEEAK-DRLRILM 237
Query: 219 SESKSRKILVILDDVWKELDLETIGIPVGDRDNCCKILLTTRLQQVC-YRMGCDPRIKLD 277
R +L ILDDVW L+ D+ C+ILLTTR + V MG + ++
Sbjct: 238 LRKHPRSLL-ILDDVWDSWVLKAF-------DSQCQILLTTRDKSVTDSVMGPKYVVPVE 289
Query: 278 A-LDQAEGLDLLRKHAGIDVADKTMTDVSKRVADECKGLPLAIKAVGSALRLRTADEWNV 336
+ L + +GL++L + AD + + + + ECKG PL + +G+ LR + W
Sbjct: 290 SSLGKEKGLEILSLFVNMKKAD--LPEQAHSIIKECKGSPLVVSLIGALLR-DFPNRWEY 346
Query: 337 ALDKLQNAKLDKI 349
L +LQN + +I
Sbjct: 347 YLKQLQNKQFKRI 359
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 61.2 bits (147), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 63/222 (28%), Positives = 105/222 (47%), Gaps = 36/222 (16%)
Query: 146 VGLHGLGGVGKTTLAKFVGNQLRQNNIFDKV---GIATVS---QDPSIINVQSELVKSLG 199
V ++G+ G GK+ LA +R +++ + G+ VS QD S + L+K
Sbjct: 150 VTIYGMAGCGKSVLA---AEAVRDHSLLEGCFSGGVHWVSIGKQDKSGL-----LMKLQN 201
Query: 200 WALTEKDEEDRADRLRLMFSESKSR----------KILVILDDVWKELDLETIGIPVGDR 249
+ EE + RL L E+K R + L+ILDDVW L+
Sbjct: 202 LCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDPWVLKAF------- 254
Query: 250 DNCCKILLTTRLQQVC-YRMGCDPRIKLDA-LDQAEGLDLLRKHAGIDVADKTMTDVSKR 307
DN C+ILLTTR + V MG + +++ L + +GL++L +++ + + +
Sbjct: 255 DNQCQILLTTRDKSVTDSVMGPKHVVPVESGLGREKGLEILS--LFVNMKKEDLPAEAHS 312
Query: 308 VADECKGLPLAIKAVGSALRLRTADEWNVALDKLQNAKLDKI 349
+ ECKG PL + +G+ LR + W L +LQN + +I
Sbjct: 313 IIKECKGSPLVVSLIGALLR-DFPNRWAYYLRQLQNKQFKRI 353
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length
Murine Apaf-1
Length = 1256
Score = 58.9 bits (141), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 62/222 (27%), Positives = 104/222 (46%), Gaps = 36/222 (16%)
Query: 146 VGLHGLGGVGKTTLAKFVGNQLRQNNIFDKV---GIATVS---QDPSIINVQSELVKSLG 199
V ++G+ G GK+ LA +R +++ + G+ VS QD S + L+K
Sbjct: 157 VTIYGMAGCGKSVLA---AEAVRDHSLLEGCFSGGVHWVSIGKQDKSGL-----LMKLQN 208
Query: 200 WALTEKDEEDRADRLRLMFSESKSR----------KILVILDDVWKELDLETIGIPVGDR 249
+ EE + RL L E+K R + L+ILDDVW L+
Sbjct: 209 LCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDPWVLKAF------- 261
Query: 250 DNCCKILLTTRLQQVC-YRMGCDPRIKLDA-LDQAEGLDLLRKHAGIDVADKTMTDVSKR 307
DN C+ILLTT + V MG + +++ L + +GL++L +++ + + +
Sbjct: 262 DNQCQILLTTSDKSVTDSVMGPKHVVPVESGLGREKGLEILS--LFVNMKKEDLPAEAHS 319
Query: 308 VADECKGLPLAIKAVGSALRLRTADEWNVALDKLQNAKLDKI 349
+ ECKG PL + +G+ LR + W L +LQN + +I
Sbjct: 320 IIKECKGSPLVVSLIGALLR-DFPNRWAYYLRQLQNKQFKRI 360
>pdb|3Q88|A Chain A, Glucose-6-Phosphate Isomerase From Francisella Tularensis
Complexed With Ribose 1,5-Bisphosphate.
pdb|3Q7I|A Chain A, Glucose-6-Phosphate Isomerase From Francisella Tularensis
Complexed With 6-Phosphogluconic Acid
Length = 543
Score = 31.2 bits (69), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 41/78 (52%), Gaps = 7/78 (8%)
Query: 26 LFCFNSIVKELEDKETNLKKEKDGINERVEQERQKHCAIVVEKD---VEKWLADVVKEMA 82
LFC +S K L+++ NLK E D ++RVE+ KH I + + ++ + E A
Sbjct: 5 LFCDDS-KKYLKEQNINLKNEFDKDDKRVEKFSLKHQNIYFDYSKNLINDYILKSLLESA 63
Query: 83 DVRTLKAKIDKKKSCFNG 100
+ +LK DK K FNG
Sbjct: 64 EKSSLK---DKIKQMFNG 78
>pdb|3LJK|A Chain A, Glucose-6-Phosphate Isomerase From Francisella Tularensis.
pdb|3M5P|A Chain A, Glucose-6-Phosphate Isomerase From Francisella Tularensis
Complexed With Fructose-6-Phosphate
Length = 543
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 41/78 (52%), Gaps = 7/78 (8%)
Query: 26 LFCFNSIVKELEDKETNLKKEKDGINERVEQERQKHCAIVVEKD---VEKWLADVVKEMA 82
LFC +S K L+++ NLK E D ++RVE+ KH I + + ++ + E A
Sbjct: 5 LFCDDS-KKYLKEQNINLKNEFDKDDKRVEKFSLKHQNIYFDYSKNLINDYILKSLLESA 63
Query: 83 DVRTLKAKIDKKKSCFNG 100
+ +LK DK K FNG
Sbjct: 64 EKSSLK---DKIKQXFNG 78
>pdb|3ADB|A Chain A, Crystal Structure Of O-Phosphoseryl-Trna Kinase Complexed
With Selenocysteine Trna And Amppnp (Crystal Type 1)
pdb|3ADB|B Chain B, Crystal Structure Of O-Phosphoseryl-Trna Kinase Complexed
With Selenocysteine Trna And Amppnp (Crystal Type 1)
pdb|3ADC|A Chain A, Crystal Structure Of O-Phosphoseryl-Trna Kinase Complexed
With Selenocysteine Trna And Amppnp (Crystal Type 2)
pdb|3ADC|B Chain B, Crystal Structure Of O-Phosphoseryl-Trna Kinase Complexed
With Selenocysteine Trna And Amppnp (Crystal Type 2)
pdb|3ADD|A Chain A, Crystal Structure Of O-Phosphoseryl-Trna Kinase Complexed
With Selenocysteine Trna And Amppnp (Crystal Type 3)
pdb|3ADD|B Chain B, Crystal Structure Of O-Phosphoseryl-Trna Kinase Complexed
With Selenocysteine Trna And Amppnp (Crystal Type 3)
Length = 259
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 19/28 (67%)
Query: 145 MVGLHGLGGVGKTTLAKFVGNQLRQNNI 172
++ L GL GVGK+T +K + L +NNI
Sbjct: 13 LIILTGLPGVGKSTFSKNLAKILSKNNI 40
>pdb|3A4L|A Chain A, Crystal Structure Of Archaeal O-Phosphoseryl-Trna(Sec)
Kinase
pdb|3A4L|B Chain B, Crystal Structure Of Archaeal O-Phosphoseryl-Trna(Sec)
Kinase
pdb|3A4M|A Chain A, Crystal Structure Of Archaeal O-Phosphoseryl-Trna(Sec)
Kinase
pdb|3A4M|B Chain B, Crystal Structure Of Archaeal O-Phosphoseryl-Trna(Sec)
Kinase
pdb|3A4N|A Chain A, Crystal Structure Of Archaeal O-Phosphoseryl-Trna(Sec)
Kinase
pdb|3A4N|B Chain B, Crystal Structure Of Archaeal O-Phosphoseryl-Trna(Sec)
Kinase
pdb|3AM1|A Chain A, Crystal Structure Of O-Phosphoseryl-Trna Kinase Complexed
With Anticodon-StemLOOP TRUNCATED TRNA(SEC)
Length = 260
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 19/28 (67%)
Query: 145 MVGLHGLGGVGKTTLAKFVGNQLRQNNI 172
++ L GL GVGK+T +K + L +NNI
Sbjct: 6 LIILTGLPGVGKSTFSKNLAKILSKNNI 33
>pdb|3AC0|A Chain A, Crystal Structure Of Beta-Glucosidase From Kluyveromyces
Marxianus In Complex With Glucose
pdb|3AC0|B Chain B, Crystal Structure Of Beta-Glucosidase From Kluyveromyces
Marxianus In Complex With Glucose
pdb|3AC0|C Chain C, Crystal Structure Of Beta-Glucosidase From Kluyveromyces
Marxianus In Complex With Glucose
pdb|3AC0|D Chain D, Crystal Structure Of Beta-Glucosidase From Kluyveromyces
Marxianus In Complex With Glucose
Length = 845
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 39/87 (44%), Gaps = 8/87 (9%)
Query: 13 ELLVDATIKQARYLFCFNSIVKELEDKETNLKKEKDGINERVEQERQKHCAIVVEKDVEK 72
EL++D Q R FCF + KE K T LKK + N RVE +V E
Sbjct: 492 ELIIDQKHNQERGSFCFGAGTKERTKKLT-LKKGQV-YNVRVEYGSGPTSGLVGEFGAGG 549
Query: 73 WLADVVK------EMADVRTLKAKIDK 93
+ A V+K E+ + L AK DK
Sbjct: 550 FQAGVIKAIDDDEEIRNAAELAAKHDK 576
>pdb|3ABZ|A Chain A, Crystal Structure Of Se-Met Labeled Beta-Glucosidase From
Kluyveromyces Marxianus
pdb|3ABZ|B Chain B, Crystal Structure Of Se-Met Labeled Beta-Glucosidase From
Kluyveromyces Marxianus
pdb|3ABZ|C Chain C, Crystal Structure Of Se-Met Labeled Beta-Glucosidase From
Kluyveromyces Marxianus
pdb|3ABZ|D Chain D, Crystal Structure Of Se-Met Labeled Beta-Glucosidase From
Kluyveromyces Marxianus
Length = 845
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 42/95 (44%), Gaps = 8/95 (8%)
Query: 5 SGIASKLGELLVDATIKQARYLFCFNSIVKELEDKETNLKKEKDGINERVEQERQKHCAI 64
SG+ EL++D Q R FCF + KE K T LKK + N RVE +
Sbjct: 484 SGLFYLNDELIIDQKHNQERGSFCFGAGTKERTKKLT-LKKGQV-YNVRVEYGSGPTSGL 541
Query: 65 VVEKDVEKWLADVVK------EMADVRTLKAKIDK 93
V E + A V+K E+ + L AK DK
Sbjct: 542 VGEFGAGGFQAGVIKAIDDDEEIRNAAELAAKHDK 576
>pdb|2W58|A Chain A, Crystal Structure Of The Dnai
pdb|2W58|B Chain B, Crystal Structure Of The Dnai
Length = 202
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 35/74 (47%), Gaps = 14/74 (18%)
Query: 144 KMVGL--HGLGGVGKTTLAKFVGNQLRQNNIFDKVGIATVSQDPSIINVQSELVKSLGWA 201
KM GL HG GVGKT L + N+L + N+ S+I EL + L +
Sbjct: 53 KMKGLYLHGSFGVGKTYLLAAIANELAKRNV------------SSLIVYVPELFRELKHS 100
Query: 202 LTEKDEEDRADRLR 215
L ++ ++ D ++
Sbjct: 101 LQDQTMNEKLDYIK 114
>pdb|1GPE|A Chain A, Glucose Oxidase From Penicillium Amagasakiense
pdb|1GPE|B Chain B, Glucose Oxidase From Penicillium Amagasakiense
Length = 587
Score = 29.3 bits (64), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 32/70 (45%), Gaps = 3/70 (4%)
Query: 279 LDQAEGLDLLRKHAGIDVADKTMTDVSKRVADECKGLPLAIKAVGSALRLRTADEWNVAL 338
LDQA LL GI++ D+T T VS R + G +AV A T ++
Sbjct: 313 LDQANVTQLLDLPVGINMQDQTTTTVSSRASSAGAG---QGQAVFFANFTETFGDYAPQA 369
Query: 339 DKLQNAKLDK 348
L N KLD+
Sbjct: 370 RDLLNTKLDQ 379
>pdb|1RZ3|A Chain A, Structure Of A Possible Uridine Kinase From Bacillus
Stearothermophilus
Length = 201
Score = 28.9 bits (63), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Query: 131 CNQIIEALKKDSTKMVGLHGLGGVGKTTLAKFVGNQLRQNNI 172
C I+ A+K ++G+ GL GKTTLA + LR+ I
Sbjct: 11 CKTIL-AIKTAGRLVLGIDGLSRSGKTTLANQLSQTLREQGI 51
>pdb|1NPY|A Chain A, Structure Of Shikimate 5-Dehydrogenase-Like Protein Hi0607
pdb|1NPY|B Chain B, Structure Of Shikimate 5-Dehydrogenase-Like Protein Hi0607
pdb|1NPY|C Chain C, Structure Of Shikimate 5-Dehydrogenase-Like Protein Hi0607
pdb|1NPY|D Chain D, Structure Of Shikimate 5-Dehydrogenase-Like Protein Hi0607
Length = 271
Score = 28.9 bits (63), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 24/95 (25%), Positives = 40/95 (42%), Gaps = 11/95 (11%)
Query: 120 FFSSFETTESACNQIIEALKKDSTKMVGLHGLGGVGKTTLAKFVGNQLRQNNIFDKVGIA 179
F ++ T A ++IE + V +HG GG+ K +A F +N+ F+K+ I
Sbjct: 96 FLRAYNTDYIAIVKLIEKYHLNKNAKVIVHGSGGMAKAVVAAF------KNSGFEKLKIY 149
Query: 180 TVSQDPSIINVQSELVKSLGWALTEKDEEDRADRL 214
+ + L G+A E +AD L
Sbjct: 150 ARN-----VKTGQYLAALYGYAYINSLENQQADIL 179
>pdb|3AIA|A Chain A, Crystal Structure Of Duf358 Reveals A Putative Spout-Class
Methltransferase
pdb|3AIA|B Chain B, Crystal Structure Of Duf358 Reveals A Putative Spout-Class
Methltransferase
Length = 211
Score = 28.5 bits (62), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
Query: 316 PLAIKAVGSALRLRTADEWNVALDKLQNAKLDKIEGIDKDSR 357
P+ IK VGS L+ + DE N+A+ L K E +D++ R
Sbjct: 69 PVCIKFVGSELKKVSPDERNIAI--FIKKALKKFEELDEEQR 108
>pdb|2B4L|A Chain A, Crystal Structure Of The Binding Protein Opuac In Complex
With Glycine Betaine
pdb|2B4M|A Chain A, Crystal Structure Of The Binding Protein Opuac In Complex
With Proline Betaine
pdb|2B4M|B Chain B, Crystal Structure Of The Binding Protein Opuac In Complex
With Proline Betaine
pdb|3CHG|D Chain D, The Compatible Solute-Binding Protein Opuac From Bacillus
Subtilis In Complex With Dmsa
pdb|3CHG|A Chain A, The Compatible Solute-Binding Protein Opuac From Bacillus
Subtilis In Complex With Dmsa
pdb|3CHG|B Chain B, The Compatible Solute-Binding Protein Opuac From Bacillus
Subtilis In Complex With Dmsa
pdb|3CHG|C Chain C, The Compatible Solute-Binding Protein Opuac From Bacillus
Subtilis In Complex With Dmsa
Length = 268
Score = 28.5 bits (62), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 19/43 (44%), Gaps = 2/43 (4%)
Query: 69 DVEKWLADVVKEMADVRTLKAKIDKKKSCF-NGWYPNWRF-RY 109
D+ W A TLK D+KK GW P+W F RY
Sbjct: 35 DLNDWTLISASSAAMTATLKKSYDRKKPIIITGWTPHWMFSRY 77
>pdb|3AI9|X Chain X, Crystal Structure Of Duf358 Protein Reveals A Putative
Spout-Class Rrna Methyltransferase
Length = 211
Score = 28.5 bits (62), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
Query: 316 PLAIKAVGSALRLRTADEWNVALDKLQNAKLDKIEGIDKDSR 357
P+ IK VGS L+ + DE N+A+ L K E +D++ R
Sbjct: 69 PVCIKFVGSELKKVSPDERNIAI--FIKKALKKFEELDEEQR 108
>pdb|1F48|A Chain A, Crystal Structure Of The Escherichia Coli
Arsenite-Translocating Atpase
pdb|1IHU|A Chain A, Crystal Structure Of The Escherichia Coli
Arsenite-Translocating Atpase In Complex With
Mg-Adp-Alf3
pdb|1II0|A Chain A, Crystal Structure Of The Escherichia Coli
Arsenite-Translocating Atpase
pdb|1II0|B Chain B, Crystal Structure Of The Escherichia Coli
Arsenite-Translocating Atpase
pdb|1II9|A Chain A, Crystal Structure Of The Escherichia Coli Arsenite-
Translocating Atpase In Complex With Amp-Pnp
pdb|1II9|B Chain B, Crystal Structure Of The Escherichia Coli Arsenite-
Translocating Atpase In Complex With Amp-Pnp
Length = 589
Score = 28.1 bits (61), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 27/109 (24%), Positives = 53/109 (48%), Gaps = 10/109 (9%)
Query: 130 ACNQIIEALKKDSTKMVGLHGLGGVGKTTLAKFVGNQLRQNNIFDKVGIATVSQDPSIIN 189
+ + +++ + ++ ++ L G GGVGKTT+A + +L FD + + DP+ +
Sbjct: 314 SLSALVDDIARNEHGLIMLMGKGGVGKTTMAAAIAVRLADMG-FD---VHLTTSDPA-AH 368
Query: 190 VQSELVKSL-GWALTEKDEEDRADRLRLMFSESKSRKILVILDDVWKEL 237
+ L SL ++ D + +R R E+K ++ LD+ K L
Sbjct: 369 LSMTLNGSLNNLQVSRIDPHEETERYRQHVLETKGKE----LDEAGKRL 413
>pdb|1CII|A Chain A, Colicin Ia
Length = 602
Score = 28.1 bits (61), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 15/63 (23%), Positives = 35/63 (55%), Gaps = 4/63 (6%)
Query: 28 CFNSIVKELEDKETNLKKEKDGINERVEQERQKHCAIVVEKDVEKWLADVVKEMADVRTL 87
N+++KE E N++ + GIN+++ +E++K + KD + + +K +++
Sbjct: 392 ALNALLKEKE----NIRNQLSGINQKIAEEKRKQDELKATKDAINFTTEFLKSVSEKYGA 447
Query: 88 KAK 90
KA+
Sbjct: 448 KAE 450
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.136 0.398
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,573,791
Number of Sequences: 62578
Number of extensions: 427216
Number of successful extensions: 1856
Number of sequences better than 100.0: 31
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 22
Number of HSP's that attempted gapping in prelim test: 1837
Number of HSP's gapped (non-prelim): 31
length of query: 375
length of database: 14,973,337
effective HSP length: 100
effective length of query: 275
effective length of database: 8,715,537
effective search space: 2396772675
effective search space used: 2396772675
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)